BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780223|ref|YP_003064636.1| ABC transporter permease
[Candidatus Liberibacter asiaticus str. psy62]
         (360 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done


Results from round 1


>gi|254780223|ref|YP_003064636.1| ABC transporter permease [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254039900|gb|ACT56696.1| ABC transporter permease [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 360

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/360 (100%), Positives = 360/360 (100%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST
Sbjct: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS
Sbjct: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD
Sbjct: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS
Sbjct: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL
Sbjct: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF
Sbjct: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360


>gi|315122337|ref|YP_004062826.1| ABC transporter permease [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495739|gb|ADR52338.1| ABC transporter permease [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 361

 Score =  512 bits (1318), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 261/356 (73%), Positives = 296/356 (83%), Gaps = 2/356 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           MRE +LNPQ IMRW I+FI+L  +YFLKGFFAPVL+ALIIGF SWPIYS FISK+E+S T
Sbjct: 1   MREIILNPQRIMRWTIIFIVLACIYFLKGFFAPVLTALIIGFASWPIYSLFISKEEKSFT 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-MWA 119
             A IAT++V+ LFI+PLLF  YY  LE+K L S V L N+ GIP P WLS IPGG +WA
Sbjct: 61  LEATIATLTVILLFIIPLLFFSYYTTLEIKNLASYVALVNEKGIPKPSWLSHIPGGGVWA 120

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
             LWTK+LS PQSL  L+E  L TNG  F  +F S F     DY LSIIFM+IALFFFYR
Sbjct: 121 G-LWTKYLSPPQSLMTLTENILTTNGTQFTLKFVSYFSNCIFDYLLSIIFMLIALFFFYR 179

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG S+S QLDSLG +L P YW+KISRI+P+VIRSTF+GMT+IAIGEGLVLGSAYW+AGVP
Sbjct: 180 DGLSMSLQLDSLGGYLLPVYWEKISRIIPRVIRSTFVGMTVIAIGEGLVLGSAYWIAGVP 239

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           S+ ALGVITAIMAMIPGGAP+SFT VSIYL+IKG+I NA  LF WGAIELFIVDKTLRPF
Sbjct: 240 SYTALGVITAIMAMIPGGAPVSFTVVSIYLVIKGSITNAILLFSWGAIELFIVDKTLRPF 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           LVGGPI+LPFLPTFFGLVGGVRTMGLLGLFIGPV+MAL+ VIWKESI+AI+EN  K
Sbjct: 300 LVGGPIRLPFLPTFFGLVGGVRTMGLLGLFIGPVIMALMTVIWKESILAIRENNLK 355


>gi|227820705|ref|YP_002824675.1| predicted transmembrane protein [Sinorhizobium fredii NGR234]
 gi|227339704|gb|ACP23922.1| predicted transmembrane protein [Sinorhizobium fredii NGR234]
          Length = 391

 Score =  354 bits (909), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 182/358 (50%), Positives = 236/358 (65%), Gaps = 2/358 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++ P    RWM++ I+L  +YF  GF  PVL+A++IGF SWPIY   +     + T 
Sbjct: 25  RSALVLPISAARWMLVLILLAGVYFFHGFVVPVLAAVVIGFASWPIYRRLLQALNGNRTL 84

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWAS 120
            A IA +SV+   +VP+     Y + E+++ +   V  N +G PVP WL+ IP  G W  
Sbjct: 85  AATIAIISVIAFIVVPISIAAAYAIDEVRDWLVWAVETNVNGAPVPAWLTTIPVAGAWLG 144

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           + W K++ HP +L  L +    +N I  I R     G       L+++FM+I LFF YRD
Sbjct: 145 QQWVKYVGHPGALGELVQLVSGSN-IGNIYRGVLVIGASAFQSFLTLLFMLITLFFVYRD 203

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G S S+QLD LGE +FP  W+++SR+VP  I ST  GM IIAIGEG+VLG AYWLAGVPS
Sbjct: 204 GHSFSKQLDRLGEQIFPMRWERLSRVVPLTISSTVTGMGIIAIGEGIVLGVAYWLAGVPS 263

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            V LG+IT +MA+IPGGAP+ FT VSIYL+  G+ F+   LF WG  ELFIVDKTLRP L
Sbjct: 264 PVTLGIITGLMALIPGGAPLCFTLVSIYLVASGSPFHGVALFAWGTTELFIVDKTLRPRL 323

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           VGGPIKLPFLPTFFGLVGGV+TMG LGLF+GPVLMAL+  IW+E +  +    E  ++
Sbjct: 324 VGGPIKLPFLPTFFGLVGGVKTMGFLGLFVGPVLMALLVAIWREWMHEVANQPEPTAN 381


>gi|307306991|ref|ZP_07586730.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
 gi|307318057|ref|ZP_07597494.1| protein of unknown function UPF0118 [Sinorhizobium meliloti AK83]
 gi|306896459|gb|EFN27208.1| protein of unknown function UPF0118 [Sinorhizobium meliloti AK83]
 gi|306901931|gb|EFN32530.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
          Length = 391

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 178/354 (50%), Positives = 232/354 (65%), Gaps = 2/354 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++ P    RW+++ I+L  +YF  GF  PVL+A++IGF SWPIY   +     + T 
Sbjct: 25  RSALVVPISAARWLLVLILLCGVYFFHGFLVPVLAAVVIGFASWPIYWRLLQGLNGNRTL 84

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWAS 120
            A IA +SV+   +VP+     Y + E+++ +   V  N +G P P WL+ IP  G W  
Sbjct: 85  AATIAIISVVAFIVVPISLAAIYAVEEVRDWLVWAVATNANGAPAPAWLATIPAVGAWLG 144

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E W K++ HP +L  L +    +N I  I R     G       L+++FM+I LFF YRD
Sbjct: 145 EQWVKYVGHPGALGELVQLVSGSN-IGNIYRGVLVVGASAFQSFLTLLFMLITLFFVYRD 203

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G S S+QLD LGE +FP  W+++SR+VP  I ST  GM IIAIGEG+VLG AYWLAGVPS
Sbjct: 204 GQSFSKQLDHLGERIFPMRWERLSRVVPLTISSTVTGMGIIAIGEGIVLGVAYWLAGVPS 263

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            V LG++T IMA+IPGGAP+ FT VS+YL+  G+  +   LF WG  ELFIVDKTLRP L
Sbjct: 264 PVTLGILTGIMALIPGGAPLCFTLVSVYLVASGSPVHGIALFTWGTTELFIVDKTLRPRL 323

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           VGGPIKLPFLPTFFGL+GGV+TMG LGLF+GPVLMAL+  IW+E +  +    E
Sbjct: 324 VGGPIKLPFLPTFFGLIGGVKTMGFLGLFVGPVLMALLVAIWREWLREVTSQPE 377


>gi|195970204|ref|NP_384592.2| ABC transporter permease [Sinorhizobium meliloti 1021]
 gi|187904139|emb|CAC41923.2| Probable permease [Sinorhizobium meliloti 1021]
          Length = 436

 Score =  346 bits (888), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 178/354 (50%), Positives = 232/354 (65%), Gaps = 2/354 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++ P    RW+++ I+L  +YF  GF  PVL+A++IGF SWPIY   +     + T 
Sbjct: 70  RSALVVPISAARWLLVLILLCGVYFFHGFLVPVLAAVVIGFASWPIYWRLLQGLNGNRTL 129

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWAS 120
            A IA +SV+   +VP+     Y + E+++ +   V  N +G P P WL+ IP  G W  
Sbjct: 130 AATIAIISVVAFIVVPISLAAIYAVEEVRDWLVWAVATNANGAPAPAWLATIPAVGAWLG 189

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E W K++ HP +L  L +    +N I  I R     G       L+++FM+I LFF YRD
Sbjct: 190 EQWVKYVGHPGALGELVQLVSGSN-IGNIYRGVLVVGASAFQSFLTLLFMLITLFFVYRD 248

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G S S+QLD LGE +FP  W+++SR+VP  I ST  GM IIAIGEG+VLG AYWLAGVPS
Sbjct: 249 GQSFSKQLDHLGERIFPMRWERLSRVVPLTISSTVTGMGIIAIGEGIVLGVAYWLAGVPS 308

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            V LG++T IMA+IPGGAP+ FT VS+YL+  G+  +   LF WG  ELFIVDKTLRP L
Sbjct: 309 PVTLGILTGIMALIPGGAPLCFTLVSVYLVASGSPVHGIALFTWGTTELFIVDKTLRPRL 368

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           VGGPIKLPFLPTFFGL+GGV+TMG LGLF+GPVLMAL+  IW+E +  +    E
Sbjct: 369 VGGPIKLPFLPTFFGLIGGVKTMGFLGLFVGPVLMALLVAIWREWLREVTSQPE 422


>gi|260466876|ref|ZP_05813060.1| protein of unknown function UPF0118 [Mesorhizobium opportunistum
           WSM2075]
 gi|259029378|gb|EEW30670.1| protein of unknown function UPF0118 [Mesorhizobium opportunistum
           WSM2075]
          Length = 413

 Score =  340 bits (873), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 173/360 (48%), Positives = 231/360 (64%), Gaps = 2/360 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R  ++ P    RW+++ I+   +YF  GF  PVL+AL+I F SWP+Y   ++    + T
Sbjct: 31  LRSAVIPPLSAARWLLVLIVAAGVYFFHGFLFPVLAALVIAFASWPLYRRLLASVGGNRT 90

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWA 119
             A  A + ++   ++P+     Y + E++E V   +  N+HG   P W++ +P  G W 
Sbjct: 91  IAATFAILFILAFLVIPIALAGTYAINEVREWVGWAIETNRHGATTPHWIATLPVIGEWL 150

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           +E WT +  HP  +  L +     N I  I R     G       L+++FM+IALFF YR
Sbjct: 151 NEQWTDNFGHPGGIGELIQLISGAN-IGSIYRGVLAAGGSAFGLLLTLLFMMIALFFAYR 209

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG   + Q+D LGE + P  W++ISR+VP  I ST  GMT+IAIGEGLVLG AYWLAGVP
Sbjct: 210 DGEHFAGQVDRLGERILPTRWERISRVVPATISSTVTGMTVIAIGEGLVLGIAYWLAGVP 269

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           S V LG +T +MA+IPGGAP+SFT VSIYL   G+      LFLWGA+ELFIVDKTLRP 
Sbjct: 270 SPVTLGALTGVMALIPGGAPLSFTLVSIYLAASGSPMAGLALFLWGAVELFIVDKTLRPK 329

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           LVGGPIKLPFLPTFFGL+GGV+TMG LGLFIGPVLMAL+  IW+E +  ++   E  + +
Sbjct: 330 LVGGPIKLPFLPTFFGLIGGVKTMGFLGLFIGPVLMALLVAIWREWLREVELADETAADS 389


>gi|13476905|ref|NP_108474.1| hypothetical protein mlr8361 [Mesorhizobium loti MAFF303099]
 gi|14027666|dbj|BAB53935.1| mlr8361 [Mesorhizobium loti MAFF303099]
          Length = 411

 Score =  340 bits (871), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 174/355 (49%), Positives = 231/355 (65%), Gaps = 2/355 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R  ++ P    RW+++ I+   +YF  GF  PVL+AL+I F SWP+Y   ++    + T
Sbjct: 29  LRSAVIPPLSAARWLLVLIVAAGVYFFHGFLFPVLAALVIAFASWPLYQRLLAGVGGNRT 88

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWA 119
             A +A + ++   ++P+     Y + E++E V   +  N+HG   P W++ +P  G W 
Sbjct: 89  IAATLAILFILAFLVIPIALAGTYAINEVREWVGWAIETNRHGAVTPHWIATMPVVGDWL 148

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           +E WT +  HP  +  L +     N I  I R A   G       L+++FM+IALFF YR
Sbjct: 149 NEQWTTNFGHPGGIGELIQLISGAN-IGSIYRGALAAGGSAFGLLLTLLFMMIALFFAYR 207

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG   + Q+D LGE + P  W++ISR+VP  I ST  GMT+IAIGEGLVLG AYWLAGVP
Sbjct: 208 DGEHFAGQVDRLGERILPTRWERISRVVPATISSTVTGMTVIAIGEGLVLGIAYWLAGVP 267

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           S V LG +T +MA+IPGGAP+SFT VSIYL   G+      LFLWGA+ELFIVDKTLRP 
Sbjct: 268 SPVTLGALTGVMALIPGGAPLSFTLVSIYLAASGSPMAGLALFLWGAVELFIVDKTLRPK 327

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           LVGGPIKLPFLPTFFGL+GGV+TMG LGLFIGPVLMAL+  IW+E +  ++   E
Sbjct: 328 LVGGPIKLPFLPTFFGLIGGVKTMGFLGLFIGPVLMALLVAIWREWLREVELVDE 382


>gi|150395339|ref|YP_001325806.1| hypothetical protein Smed_0111 [Sinorhizobium medicae WSM419]
 gi|150026854|gb|ABR58971.1| protein of unknown function UPF0118 [Sinorhizobium medicae WSM419]
          Length = 391

 Score =  338 bits (867), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 176/359 (49%), Positives = 230/359 (64%), Gaps = 2/359 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++ P    RW+++ ++L  +YF  GF  PVL+A++IGF SWPIY   +     + T 
Sbjct: 25  RSALVVPISAARWLLVLVLLAGVYFFHGFLVPVLAAVVIGFASWPIYWRMLQALNGNRTL 84

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWAS 120
            A IA + V+   +VP+     Y + E++  +   V  N +G P P WL+ IP  G W  
Sbjct: 85  AATIALICVVAFIVVPISLAAIYAVDEVRSGLVWAVETNANGAPAPAWLATIPAVGAWLG 144

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E W K++ HP +L  L +    +N I  I R     G       L+++FM+I LFF YRD
Sbjct: 145 EQWVKNVGHPGALGELVQLVSGSN-IGNIYRGVLVVGASAFQSFLTLLFMLITLFFVYRD 203

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G S S+QLD LGE +FP  W+++SR+VP  I ST  GM IIAIGEG+VLG AYWLAGVPS
Sbjct: 204 GHSFSKQLDHLGERIFPMRWERLSRVVPLTISSTVTGMGIIAIGEGIVLGVAYWLAGVPS 263

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            V LG+IT +MA++PGGAP+ FT VS+YL+  G+  +   LF WG  ELFIVDKTLRP L
Sbjct: 264 PVTLGIITGLMALVPGGAPLCFTLVSVYLVASGSPIHGIALFTWGTTELFIVDKTLRPRL 323

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           VGGPIKLPFLPTFFGLVGGV+TMG LGLF+GPVLMAL+  IW+E +  +    E     
Sbjct: 324 VGGPIKLPFLPTFFGLVGGVKTMGFLGLFVGPVLMALLVAIWREWLREVTSQPEPADDK 382


>gi|319784191|ref|YP_004143667.1| hypothetical protein Mesci_4507 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170079|gb|ADV13617.1| protein of unknown function UPF0118 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 401

 Score =  336 bits (862), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 172/360 (47%), Positives = 231/360 (64%), Gaps = 2/360 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R  ++ P    RW+++ I+   +YF  GF  PVL+AL+I F SWP+Y   +     + T
Sbjct: 22  LRAAVIPPLSAARWLLVLIVAAGVYFFHGFLFPVLAALVIAFASWPLYRRLLVAVGGNRT 81

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWA 119
             A  A + ++   ++P+     Y + E++E V+  +  N+HG   P W++ +P  G W 
Sbjct: 82  IAATFAILFILAFLVIPIALAGTYAINEVREWVAWAIETNRHGAVTPHWIATMPVVGEWL 141

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           +E WT +  HP  +  L +     N I  I R     G       L+++FM+IALFF YR
Sbjct: 142 NEQWTTNFGHPGGIGELIQLVSGAN-IGSIYRGVLAAGGSAFGLLLTLLFMMIALFFAYR 200

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG   + Q+D LGE + P  W++ISR+VP  I ST  GMT+IAIGEGLVLG AYWLAGVP
Sbjct: 201 DGEHFAGQVDRLGERILPTRWERISRVVPATISSTVTGMTVIAIGEGLVLGIAYWLAGVP 260

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           S V LG +T +MA+IPGGAP+SFT VSIYL   G+      LFLWGA+ELFIVDKTLRP 
Sbjct: 261 SPVTLGALTGVMALIPGGAPLSFTLVSIYLAASGSPMAGLALFLWGAVELFIVDKTLRPK 320

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           LVGGPIKLPFLPTFFGL+GGV+TMG LGLFIGPVLMAL+  IW+E +  ++  ++ +   
Sbjct: 321 LVGGPIKLPFLPTFFGLIGGVKTMGFLGLFIGPVLMALLVAIWREWLREVEMAEDVVPDG 380


>gi|222149993|ref|YP_002550950.1| permease [Agrobacterium vitis S4]
 gi|221736975|gb|ACM37938.1| permease [Agrobacterium vitis S4]
          Length = 349

 Score =  336 bits (862), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 173/350 (49%), Positives = 232/350 (66%), Gaps = 2/350 (0%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M+ P    RW+++ +++ S YF  GF  P+L+A++IGF SWPIY   +S    + T  A 
Sbjct: 1   MVAPTSAARWLLLAVLMASAYFFYGFIVPLLAAMVIGFASWPIYRRILSLARGNRTIGAT 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELW 123
           IA + V+   +VP+     Y + E+K      + AN+ G PVP+WL  +P  G W SE W
Sbjct: 61  IAIILVVSFIVVPISLAGIYAVDEVKSWGVWALRANEVGAPVPQWLIQVPLAGAWLSEHW 120

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +++ HP +L  L +     N I  I R     G       L+++FM+IALFF YRDG  
Sbjct: 121 DQYVGHPGALGELVQLISGAN-IGTIYRGLLVVGSSAFHSFLTLLFMLIALFFVYRDGER 179

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           I  Q+D +GE + P  W+++SR+VP  I ST  GMTIIA+GEG+VLG AYW+AGVPS V 
Sbjct: 180 IVAQVDIVGERILPGRWERVSRLVPLTISSTVTGMTIIAVGEGIVLGLAYWIAGVPSPVT 239

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           LG+IT  MA+IPGGAP+SFT VSIYL+  G+      L  WG +ELFIVDKTLRP LVGG
Sbjct: 240 LGIITGFMALIPGGAPLSFTLVSIYLVASGSTIAGVGLLAWGTVELFIVDKTLRPRLVGG 299

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           PIKLPFLPTFFGL+GGV+TMG+LGLF+GPVLMA++  IW+E ++  K+ +
Sbjct: 300 PIKLPFLPTFFGLIGGVKTMGMLGLFVGPVLMAILVAIWREWLLEAKQPE 349


>gi|325293121|ref|YP_004278985.1| permease [Agrobacterium sp. H13-3]
 gi|325060974|gb|ADY64665.1| permease [Agrobacterium sp. H13-3]
          Length = 412

 Score =  334 bits (856), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 170/350 (48%), Positives = 233/350 (66%), Gaps = 2/350 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++ P    RW+++ + L  +YF  GF  PVL+AL+IGF SWP+Y+  + +   ++T 
Sbjct: 23  RIALIPPISAARWLLVLVALAGIYFFHGFLVPVLAALVIGFASWPVYTRLLRQVGGNTTL 82

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWAS 120
            A IA + ++   +VP+     Y   E++E     V  N+ G PVP W++ +PG G W  
Sbjct: 83  GASIAIILILTFLVVPIFIAASYTASEIREWFGWAVHVNKVGAPVPDWIAALPGVGSWLG 142

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E W K++  P ++  + +     N I  I R     G       L+++FM+IALFF YR+
Sbjct: 143 EQWVKYIGTPGAIGEVIQLVSGAN-IGNIYRAILAAGNGAFHLVLTLLFMLIALFFVYRN 201

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G   S Q+D +GE + P  W++ISR+VP  I ST  GMT+IAIGEG++LG AYW+AGVPS
Sbjct: 202 GAGFSHQVDLVGERILPTRWERISRVVPATISSTVTGMTLIAIGEGIILGIAYWIAGVPS 261

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            V LGV+T +MA+IPGGAP+SFT VSIYL+  G+      LF+WG++ELFIVDKT+RP L
Sbjct: 262 PVTLGVLTGVMALIPGGAPLSFTLVSIYLVASGSPAYGLGLFIWGSVELFIVDKTIRPKL 321

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           VGGPIKLPFLPTFFGLVGGV+TMG LGLFIGPVLMAL+  IW+E +  ++
Sbjct: 322 VGGPIKLPFLPTFFGLVGGVKTMGFLGLFIGPVLMALLVAIWREWVREVE 371


>gi|86357805|ref|YP_469697.1| putative permease protein [Rhizobium etli CFN 42]
 gi|86281907|gb|ABC90970.1| putative permease protein [Rhizobium etli CFN 42]
          Length = 398

 Score =  332 bits (852), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 176/347 (50%), Positives = 236/347 (68%), Gaps = 4/347 (1%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           RW+++ ++   +YF  GF  PVL+AL+IGF SWP+Y   +S+   ++T  A IA V ++ 
Sbjct: 32  RWLLVLVVAAGVYFFYGFLVPVLAALVIGFASWPLYRKLLSRVGGNTTIAATIAIVMIVT 91

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQ 131
             ++P+     Y   E++  V+  + AN+ G   P W+  +P  G +  ++WTK++  P 
Sbjct: 92  FLVIPIGLAVTYTTGEVRNWVTWAIHANRTGAATPDWIVALPWAGAYLDDVWTKYIGSPG 151

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +L  L +     N I  I R     G       L+++FM+IALFF YRDGFS S+Q+D L
Sbjct: 152 ALGELIQAVSGAN-IGNIYRALLAAGGGAFHLLLTLLFMLIALFFVYRDGFSFSKQIDML 210

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
           GE + P  W++ISR+VP  I ST +GMT+IAIGEG+VLG AYW+AGVPS V LGV+T +M
Sbjct: 211 GERILPNRWERISRVVPATISSTVMGMTLIAIGEGIVLGVAYWIAGVPSPVTLGVLTGVM 270

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           A+IPGGAP+SFT VS+YLL  G+      LF+WG +ELFIVDKTLRP LVGGPIKLPFLP
Sbjct: 271 ALIPGGAPLSFTLVSVYLLASGSHAAGIALFVWGTVELFIVDKTLRPKLVGGPIKLPFLP 330

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK--ENKEKI 356
           TFFGL+GGV+TMG LGLFIGPVLMALI  IW+E I   +  E+ EK+
Sbjct: 331 TFFGLIGGVKTMGFLGLFIGPVLMALIVAIWREWIHEARNAESGEKL 377


>gi|159184894|ref|NP_354723.2| permease [Agrobacterium tumefaciens str. C58]
 gi|159140174|gb|AAK87508.2| permease [Agrobacterium tumefaciens str. C58]
          Length = 412

 Score =  331 bits (849), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 169/350 (48%), Positives = 236/350 (67%), Gaps = 2/350 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++ P    RW+++ ++L  +YF  GF  PVL+AL+IGF SWP+Y+  + +   ++T 
Sbjct: 23  RIALIPPISAARWLLLLVVLAGIYFFNGFLVPVLAALVIGFASWPVYTRLLRQVGGNTTL 82

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWAS 120
            A IA + ++   +VP+     Y   E++E     V  N+ G PVP W++ +PG G W  
Sbjct: 83  GATIAIILIIAFLVVPIFIAASYTATEIREWFGWAVHVNKAGAPVPDWIAALPGIGPWLG 142

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E W K++  P ++  + +     N I  I R     G       L+++FM+IALFF YR+
Sbjct: 143 EQWVKYIGTPGAIGEVIQLVSGAN-IGNIYRAILAAGNGAFHLVLTLLFMLIALFFVYRN 201

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G   ++Q+D +GE + P  W++ISR+VP  I ST  GMT+IAIGEG++LG AYW+AGVPS
Sbjct: 202 GAGFTRQIDLVGERILPTRWERISRVVPATISSTVTGMTLIAIGEGIILGIAYWIAGVPS 261

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            V LGV+T +MA+IPGGAP+SFT VSIYL+  G+  +   LF+WG++ELFIVDKT+RP L
Sbjct: 262 PVTLGVLTGVMALIPGGAPLSFTLVSIYLVASGSPAHGLALFVWGSVELFIVDKTIRPKL 321

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           VGGPIKLPFLPTFFGLVGGV+TMG LGLFIGPVLMAL+  IW+E +  ++
Sbjct: 322 VGGPIKLPFLPTFFGLVGGVKTMGFLGLFIGPVLMALLVAIWREWVREVE 371


>gi|209549432|ref|YP_002281349.1| hypothetical protein Rleg2_1838 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535188|gb|ACI55123.1| protein of unknown function UPF0118 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 398

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 177/344 (51%), Positives = 235/344 (68%), Gaps = 3/344 (0%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           RW+++ ++   +YF  GF  PVL+AL+IGF SWP+Y   +++   ++T  A IA + ++ 
Sbjct: 34  RWLLVLVVAAGVYFFYGFLVPVLAALVIGFASWPLYRKLLARVGGNTTIAATIAIIMIIT 93

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQ 131
             ++P+     Y   E++  V+  + AN+ G P P W+  +P  G +  E+WTK++  P 
Sbjct: 94  FLVIPIGLAITYTTGEVRTWVAWAIHANRAGAPTPAWIVALPWAGAYLDEVWTKYIGSPG 153

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +L  + +     N I  I R     G       L+++FM+IALFF YRDGFS S+Q+D L
Sbjct: 154 ALGEVIQAVSGAN-IGNIYRAVLAAGGGAFHLLLTLLFMLIALFFVYRDGFSFSKQIDML 212

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
           GE + P  W++ISR+VP  I ST +GMT+IAIGEG+VLG AYW+AGVPS V LGV+T +M
Sbjct: 213 GERILPNRWERISRVVPATISSTVMGMTLIAIGEGIVLGLAYWIAGVPSPVTLGVLTGVM 272

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           A+IPGGAP+SFT VSIYLL  G+      LF+WG +ELFIVDKTLRP LVGGPIKLPFLP
Sbjct: 273 ALIPGGAPLSFTLVSIYLLASGSHVAGIGLFVWGTVELFIVDKTLRPKLVGGPIKLPFLP 332

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           TFFGLVGGV+TMG LGLFIGPVLMALI  IW+E I   + N EK
Sbjct: 333 TFFGLVGGVKTMGFLGLFIGPVLMALIVAIWREWIHEAR-NAEK 375


>gi|116252266|ref|YP_768104.1| transmembrane protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256914|emb|CAK08008.1| putative transmembrane protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 405

 Score =  323 bits (827), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 176/348 (50%), Positives = 236/348 (67%), Gaps = 3/348 (0%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           RW+++ ++   +YF  GF  PVL+AL+IGF SWP+Y   +++   ++T  A IA + ++ 
Sbjct: 34  RWLLVLVVAAGVYFFYGFLVPVLAALVIGFASWPLYRKLLARVGGNTTIAATIAIILIIT 93

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQ 131
             ++P+     Y   E++  V+  + AN+ G P P W+  +P  G +  E+WTK++  P 
Sbjct: 94  FLVIPIGLAVTYTTGEVRTWVAWAIHANRAGAPTPDWIVALPWAGAYLDEVWTKYIGSPG 153

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +L  + +     N I  I R     G       L+++FM+IALFF YRDGFS S+Q+D L
Sbjct: 154 ALGEVIQAVSGAN-IGNIYRAVLAAGGGAFHLLLTLLFMLIALFFVYRDGFSFSKQIDML 212

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
           GE + P  W++ISR+VP  I ST +GMT+IAIGEG+VLG AYW+AGVPS V LGV+T +M
Sbjct: 213 GERILPNRWERISRVVPATISSTVMGMTLIAIGEGIVLGLAYWIAGVPSPVTLGVLTGVM 272

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           A+IPGGAP+SFT VSIYLL  G+      LF+WG +ELFIVDKTLRP LVGGPIKLPFLP
Sbjct: 273 ALIPGGAPLSFTLVSIYLLASGSHVAGISLFVWGTVELFIVDKTLRPKLVGGPIKLPFLP 332

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           TFFGLVGGV+TMG LGLFIGPVLMALI  IW+E I   + N +K  + 
Sbjct: 333 TFFGLVGGVKTMGFLGLFIGPVLMALIVAIWREWIHEAR-NADKSETG 379


>gi|190891868|ref|YP_001978410.1| putative permease protein [Rhizobium etli CIAT 652]
 gi|190697147|gb|ACE91232.1| putative permease protein [Rhizobium etli CIAT 652]
          Length = 398

 Score =  322 bits (826), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 178/346 (51%), Positives = 236/346 (68%), Gaps = 4/346 (1%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           RW+++ I+   +YF  GF  PVL+AL+IGF SWP+Y   +++   ++T  A IA + ++ 
Sbjct: 32  RWLLVLIVAAGVYFFYGFLVPVLAALVIGFASWPLYRKLLARVGGNTTIAATIAIIMIVT 91

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQ 131
             ++P+ F   Y   E++  ++  + AN+ G   P W++ +P  G +  ELWTK++  P 
Sbjct: 92  FLVIPIGFAATYTTGEVRTWLAWAIHANRSGASTPGWIAALPFAGPYLDELWTKYIGSPG 151

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +L  L +     + I  I R     G       L+++FM+IALFF YRDGFS S+QLD L
Sbjct: 152 ALGELIQAVSGAH-IGNIYRAVLAAGGGAFHLLLTLLFMLIALFFVYRDGFSFSKQLDML 210

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
           GE + P  W++ISR+VP  I ST +GMT+IAIGEG+VLG AYW+AGVPS V LGV+T +M
Sbjct: 211 GERILPNRWERISRVVPATISSTVMGMTLIAIGEGIVLGLAYWIAGVPSPVTLGVLTGVM 270

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           A+IPGGAP+SFT VSIYLL  G+      LF+WG +ELFIVDKTLRP LVGGPIKLPFLP
Sbjct: 271 ALIPGGAPLSFTLVSIYLLASGSHVAGVGLFVWGTVELFIVDKTLRPKLVGGPIKLPFLP 330

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK--ENKEK 355
           TFFGLVGGV+TMG LGLFIGPVLMALI  IW+E I   +  E  E+
Sbjct: 331 TFFGLVGGVKTMGFLGLFIGPVLMALIVAIWREWIHEARNAETGER 376


>gi|119896356|ref|YP_931569.1| permease [Azoarcus sp. BH72]
 gi|119668769|emb|CAL92682.1| probable permease [Azoarcus sp. BH72]
          Length = 367

 Score =  321 bits (823), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 172/349 (49%), Positives = 231/349 (66%), Gaps = 12/349 (3%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           + RW++  ++L  +YFL GF  PVL+ALIIGF SWP+Y   + +    S   A +A ++V
Sbjct: 10  VARWLLFLLLLAGVYFLSGFIVPVLAALIIGFASWPLYERLLRRCGGRSAVAASLALMTV 69

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP--GGMWASELWTKHLS 128
           + + +VPL     Y M E   L+  ++ AN++G+  PRW+  +P  GG  A+ LW ++L 
Sbjct: 70  ILVLVVPLSLAGSYAMREADTLIEWLLAANRNGMAPPRWVEALPLVGGRLAA-LWQEYLG 128

Query: 129 HPQSL----KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
            PQ+L    +ILS   L       I R         L   L+++FM+I LFF Y+DG  I
Sbjct: 129 APQALGEWVQILSGQHLGN-----IYRILLAATGDLLHAVLTLLFMLITLFFIYKDGDRI 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           + QLD +GE + PA W++ SR+VP  + +T  GM +IAIGEG+VLG AYW+AGVPS V L
Sbjct: 184 AAQLDRVGEQVLPARWQRFSRVVPATVSATVTGMGLIAIGEGVVLGLAYWIAGVPSPVLL 243

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           GV TA MA+IPGGAP++FT VS+YL+  G+      LF WG  ELFIVDKTLRP LVGGP
Sbjct: 244 GVATAFMALIPGGAPLAFTLVSLYLVGSGDPMAGLALFTWGTCELFIVDKTLRPRLVGGP 303

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +KLPFLPTFFGLVGGV+TMGL+GLF+GPVLMAL+  IW+E +   +E  
Sbjct: 304 VKLPFLPTFFGLVGGVKTMGLVGLFVGPVLMALLVAIWREWLHHTEEEA 352


>gi|241204758|ref|YP_002975854.1| hypothetical protein Rleg_2037 [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858648|gb|ACS56315.1| protein of unknown function UPF0118 [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 405

 Score =  321 bits (822), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 175/348 (50%), Positives = 237/348 (68%), Gaps = 3/348 (0%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           RW+++ ++   +YF  GF  PVL+AL+IGF SWP+Y   +++   ++T  A IA + ++ 
Sbjct: 34  RWLLVLVVAAGVYFFYGFLVPVLAALVIGFASWPLYRKLLARVGGNTTIAATIAIIMIIT 93

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQ 131
             ++P+     Y   E++  V+  + AN+ G P P W+  +P  G + +E+WT+++  P 
Sbjct: 94  FLVIPIGLAVTYTTGEVRTWVTWAIHANRVGAPTPDWIVALPWAGAYLNEVWTRYIGSPG 153

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +L  + +     N I  I R     G       L+++FM+IALFF YRDGFS S+Q+D L
Sbjct: 154 ALGEVIQAVSGAN-IGNIYRAVLAAGGGAFHLLLTLLFMLIALFFVYRDGFSFSKQIDML 212

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
           GE + P  W++ISR+VP  I ST +GMT+IAIGEG+VLG AYW+AGVPS V LGV+T +M
Sbjct: 213 GERILPNRWERISRVVPATISSTVMGMTLIAIGEGIVLGLAYWIAGVPSPVTLGVLTGVM 272

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           A+IPGGAP+SFT VSIYLL  G+      LF+WG +ELFIVDKTLRP LVGGPIKLPFLP
Sbjct: 273 ALIPGGAPLSFTLVSIYLLASGSHVAGIGLFVWGTVELFIVDKTLRPKLVGGPIKLPFLP 332

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           TFFGLVGGV+TMG LGLFIGPVLMALI  IW+E I   + N +K  + 
Sbjct: 333 TFFGLVGGVKTMGFLGLFIGPVLMALIVAIWREWIHEAR-NADKSETG 379


>gi|163858826|ref|YP_001633124.1| hypothetical protein Bpet4506 [Bordetella petrii DSM 12804]
 gi|163262554|emb|CAP44857.1| conserved hypothetical protein [Bordetella petrii]
          Length = 389

 Score =  321 bits (822), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 164/360 (45%), Positives = 229/360 (63%), Gaps = 2/360 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M + +L    I RW+++ ++L   YFL GF  P L+ALIIG  +WP++   + K    +T
Sbjct: 21  MHQPVLPAYLIARWLLLLVLLAGAYFLSGFLVPALAALIIGLATWPLFQRIVQKCGGRAT 80

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWA 119
             A +A + V+ + IVPL     Y + E     +  + AN+HG+ VP W+S +P  G   
Sbjct: 81  LAATLALIGVILVIIVPLALALSYAVQEASNFFAWALAANRHGMAVPDWISSLPAVGPRL 140

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           +  W  +L  P +L  L E     +  +      S  G  F    L+++FM+I LFF Y+
Sbjct: 141 AVYWQTYLGEPHALGALVELVSGEHLGNIYRMVLSATGNAF-QLLLNVVFMLITLFFVYK 199

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  +  QLD LGE + P  W++ SR+VP  + ST  GM++IA+GEG+VLG AYWLAGVP
Sbjct: 200 DGDRMIAQLDVLGERILPTRWQRFSRVVPATVGSTVTGMSLIAVGEGVVLGVAYWLAGVP 259

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           S V LGV+T  MA+IPGGAP+SFT VS+YL+  G++     L  WG IELFIVDKTLRP 
Sbjct: 260 SPVLLGVVTGFMALIPGGAPLSFTLVSLYLIGSGHLVAGLALLAWGTIELFIVDKTLRPR 319

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           LVGGP+KLPFLPTFFGL+GGV+TMG++GLF+GPVLMAL+  +W+E +  ++  ++    N
Sbjct: 320 LVGGPVKLPFLPTFFGLIGGVKTMGIVGLFVGPVLMALLVAVWREWVRNVERERDTARLN 379


>gi|218672333|ref|ZP_03522002.1| putative permease protein [Rhizobium etli GR56]
          Length = 413

 Score =  320 bits (821), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 175/340 (51%), Positives = 233/340 (68%), Gaps = 2/340 (0%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           RW+++ I+   +YF  GF  PVL+AL+IGF SWP+Y   +++   ++T  A IA + ++ 
Sbjct: 32  RWLLVLIVAAGVYFFYGFLVPVLAALVIGFASWPLYRKLLARVGGNTTIAATIAIIMIVT 91

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQ 131
             ++P+ F   Y   E++  ++  + AN+ G   P W++ +P  G +  ELWTK++  P 
Sbjct: 92  FLVIPIGFAATYTTGEVRTWLAWAIHANRSGASTPGWIAALPFAGPYLDELWTKYIGSPG 151

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +L  L +     + I  I R     G       L+++FM+IALFF YRDGFS S+Q+D L
Sbjct: 152 ALGELIQAVSGAH-IGNIYRAVLAAGGGAFHLLLTLLFMLIALFFVYRDGFSFSKQIDML 210

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
           GE + P  W++ISR+VP  I ST +GMT+IAIGEG+VLG AYW+AGVPS V LGV+T +M
Sbjct: 211 GERILPNRWERISRVVPATISSTVMGMTLIAIGEGIVLGLAYWIAGVPSPVTLGVLTGVM 270

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           A+IPGGAP+SFT VSIYLL  G+      LF+WG +ELFIVDKTLRP LVGGPIKLPFLP
Sbjct: 271 ALIPGGAPLSFTLVSIYLLASGSHVAGVGLFVWGTVELFIVDKTLRPKLVGGPIKLPFLP 330

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           TFFGLVGGV+TMG LGLFIGPVLMALI  IW+E I   + 
Sbjct: 331 TFFGLVGGVKTMGFLGLFIGPVLMALIVAIWREWIHEARN 370


>gi|222086043|ref|YP_002544575.1| permease protein [Agrobacterium radiobacter K84]
 gi|221723491|gb|ACM26647.1| permease protein [Agrobacterium radiobacter K84]
          Length = 392

 Score =  320 bits (819), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 164/348 (47%), Positives = 230/348 (66%), Gaps = 2/348 (0%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           RW+++ I    +YF  GF  PVL+A +IGF +WP+YS  + +   ++T  A IA   ++ 
Sbjct: 33  RWLLILIAAAGIYFFYGFLIPVLAAAVIGFATWPLYSDLLRRTGGNTTLAAAIAIAFIVT 92

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQ 131
             ++P++    Y   E++E     V  N+ G P P+W+  +P  G W  + WT+++  P 
Sbjct: 93  FLVLPIVLSAIYMAGEVREWFGWAVHVNRDGAPPPQWILALPMVGAWLGDQWTQYIGSPG 152

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           S+  L++  +    I  I R     G       L+++FM+IALFF YRDG    +Q+D L
Sbjct: 153 SIGELAQ-LISGAHIGNIYRAVLAAGGGAFHVILTLLFMLIALFFIYRDGSMFVRQVDLL 211

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
           GE + P  W++ISR+VP  I ST +GMT+IAIGEG+VLG AYW+AG PS + LGV+T +M
Sbjct: 212 GERILPNRWERISRVVPATISSTVMGMTLIAIGEGIVLGVAYWIAGAPSAITLGVLTGVM 271

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           A++PGGAP+S + VSIYL+  G+++    LF+WG +ELFIVDKTLRP LVGGPIKLPFLP
Sbjct: 272 ALVPGGAPLSMSLVSIYLIASGSLWAGIALFVWGTVELFIVDKTLRPKLVGGPIKLPFLP 331

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           TFFGLVGGV+TMG LGLFIGPVLMA+I  IW+E I   +  +E+ +  
Sbjct: 332 TFFGLVGGVKTMGFLGLFIGPVLMAIIVAIWREWIREAELTEEQHAQE 379


>gi|293602078|ref|ZP_06684532.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292819533|gb|EFF78560.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 374

 Score =  319 bits (818), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 161/350 (46%), Positives = 228/350 (65%), Gaps = 2/350 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I RW+++ ++L  +YFL GF  P L+ALIIG  SWP+Y   + +    +   A +A + V
Sbjct: 10  IARWLLLLVLLAGVYFLSGFLVPALAALIIGLASWPLYQRLVVRCGGRTAVAASLALLMV 69

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSH 129
           + + IVP+     Y + E     +  + AN+HG+ VP W++ +P  G    + W  ++  
Sbjct: 70  IVVLIVPMSLALSYAIKEASTFFAWAIAANRHGVAVPNWITSMPVVGERLGQYWESYIGE 129

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
           P +L  L E     +  +      +  G +F    L+++FM+I LFF Y+DG  +  QLD
Sbjct: 130 PHALGALVEAVSGEHLGNIYRMVLAATGNVF-QLLLTVLFMLITLFFVYKDGIRMVAQLD 188

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            LGE + PA W++ SR+VP  I ST  GM +IA+GEGLVLG AYW+AGVPS V LGV+T 
Sbjct: 189 VLGERILPARWQRFSRVVPATINSTVTGMGLIALGEGLVLGVAYWVAGVPSPVLLGVVTG 248

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            MA+IPGGAP+SFT VS+YL+  G++     L +WG++ELFIVDKTLRP LVGGP+KLPF
Sbjct: 249 FMALIPGGAPLSFTLVSLYLVGSGHVVAGIALMVWGSVELFIVDKTLRPRLVGGPVKLPF 308

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           LPTFFGLVGGV+TMGL+GLF+GPVLMAL+  +W+E +    + ++   S+
Sbjct: 309 LPTFFGLVGGVKTMGLVGLFVGPVLMALLVAVWREWVHHEVQERDAERSH 358


>gi|217974961|ref|YP_002359712.1| hypothetical protein Sbal223_3812 [Shewanella baltica OS223]
 gi|217500096|gb|ACK48289.1| protein of unknown function UPF0118 [Shewanella baltica OS223]
          Length = 356

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 170/351 (48%), Positives = 236/351 (67%), Gaps = 7/351 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I R +++ ++   ++F   F  P L+ALI+ F+SWP+Y   ++K    S   A IA   +
Sbjct: 10  IGRSLLILLLCAGVFFFIDFLVPALAALIVCFSSWPLYQKLLAKCGGRSALAATIALCCI 69

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSH 129
           +   I+PL+F+F Y + E++  V  +V  NQHG PVP W+ D+P  G W +  W + +  
Sbjct: 70  VLGLIIPLVFVFSYALQEIRTWVDWLVFTNQHGSPVPLWIKDLPWMGEWLTLQWQQFIGE 129

Query: 130 PQSL-KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           P  L KI+S   +    +  I R+  + G   L   L+++FM+I LFF Y+DG  +++QL
Sbjct: 130 PHELGKIISA--ISGQNLSGISRWVLQLGWNTLGLLLTLLFMLITLFFLYKDGQQVAKQL 187

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D +GE + PA W   SR+VP  + ST +GMT+IAIGEG+VLG AYW+AGVPS VA GV+T
Sbjct: 188 DIVGERVLPARWHSFSRVVPATVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSAVAFGVLT 247

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           A MA++PGGAP  FT +S+YL+  G++     LFLWG+IELFIVDKTLRP LVGGPIKLP
Sbjct: 248 AFMALVPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLVGGPIKLP 307

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           FLPTFFGL+GGV+TMG +GLF+GPVLMAL+  IW+E    ++E  E I S+
Sbjct: 308 FLPTFFGLIGGVKTMGFVGLFVGPVLMALLVAIWRE---WLREEPEIIQSD 355


>gi|117918932|ref|YP_868124.1| hypothetical protein Shewana3_0477 [Shewanella sp. ANA-3]
 gi|117611264|gb|ABK46718.1| protein of unknown function UPF0118 [Shewanella sp. ANA-3]
          Length = 368

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 168/342 (49%), Positives = 235/342 (68%), Gaps = 4/342 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +++   + R +++ ++   ++F   F  P L+ALI+ F+SWP+Y   ++K    S   A 
Sbjct: 4   IISNAAVGRTLLILLLCAGVFFFIDFLVPALAALIVCFSSWPLYQKLMAKCGGRSALSAT 63

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELW 123
           IA V ++   I PL+F+F Y + E++  V  +V ANQHG PVP W+ D+P  G W +  W
Sbjct: 64  IALVLIIVGLITPLIFVFSYALQEIRAWVEWLVYANQHGAPVPLWIKDLPWIGEWLTLQW 123

Query: 124 TKHLSHPQSL-KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            + +  P  L KI+S   +    +  I R+  + G   L   L+++FM+I LFF Y+DG 
Sbjct: 124 QQFIGEPHELGKIVSA--ISGQNLSGISRWVLQLGWNTLGLLLTLLFMLITLFFLYKDGE 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           S+++QLD +GE + PA W + SR+VP  + ST +GMT+IAIGEG+VLG AYW+AGVPS V
Sbjct: 182 SVAKQLDIVGERILPARWHRFSRVVPATVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSAV 241

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           A GV+TA MA++PGGAP  FT +S+YL+  G++     LFLWG+IELFIVDKTLRP LVG
Sbjct: 242 AFGVLTAFMALVPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLVG 301

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           GPIKLPFLPTFFGL+GGV+TMG +GLF+GPVLMAL+  IW+E
Sbjct: 302 GPIKLPFLPTFFGLIGGVKTMGFVGLFVGPVLMALLIAIWRE 343


>gi|160877112|ref|YP_001556428.1| hypothetical protein Sbal195_4008 [Shewanella baltica OS195]
 gi|160862634|gb|ABX51168.1| protein of unknown function UPF0118 [Shewanella baltica OS195]
 gi|315269316|gb|ADT96169.1| protein of unknown function UPF0118 [Shewanella baltica OS678]
          Length = 360

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 170/351 (48%), Positives = 236/351 (67%), Gaps = 7/351 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I R +++ ++   ++F   F  P L+ALI+ F+SWP+Y   ++K    S   A IA   +
Sbjct: 10  IGRSLLILLLCAGVFFFIDFLVPALAALIVCFSSWPLYQKLLAKCGGRSALAATIALCCI 69

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSH 129
           +   I+PL+F+F Y + E++  V  +V  NQHG PVP W+ D+P  G W +  W + +  
Sbjct: 70  VLGLIIPLVFVFSYALQEIRTWVDWLVFTNQHGSPVPLWIKDLPWMGEWLTLQWQQFIGE 129

Query: 130 PQSL-KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           P  L KI+S   +    +  I R+  + G   L   L+++FM+I LFF Y+DG  +++QL
Sbjct: 130 PHELGKIISA--ISGQNLSGISRWVLQLGWNTLGLLLTLLFMLITLFFLYKDGQQVAKQL 187

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D +GE + PA W   SR+VP  + ST +GMT+IAIGEG+VLG AYW+AGVPS VA GV+T
Sbjct: 188 DIVGERVLPARWHSFSRVVPATVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSAVAFGVLT 247

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           A MA++PGGAP  FT +S+YL+  G++     LFLWG+IELFIVDKTLRP LVGGPIKLP
Sbjct: 248 AFMALVPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLVGGPIKLP 307

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           FLPTFFGL+GGV+TMG +GLF+GPVLMAL+  IW+E    ++E  E I S+
Sbjct: 308 FLPTFFGLIGGVKTMGFVGLFVGPVLMALLVAIWRE---WLREEPEIIQSD 355


>gi|114049038|ref|YP_739588.1| hypothetical protein Shewmr7_3551 [Shewanella sp. MR-7]
 gi|113890480|gb|ABI44531.1| protein of unknown function UPF0118 [Shewanella sp. MR-7]
          Length = 364

 Score =  317 bits (811), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 168/342 (49%), Positives = 235/342 (68%), Gaps = 4/342 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +++   + R +++ ++   ++F   F  P L+ALI+ F+SWP+Y   ++K    S   A 
Sbjct: 4   IISNAAVGRTLLILLLCAGVFFFIDFLVPALAALIVCFSSWPLYQKLMAKCGGRSALSAT 63

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELW 123
           IA V ++   I PL+F+F Y + E++  V  +V ANQHG PVP W+ D+P  G W +  W
Sbjct: 64  IALVLIIVGLITPLIFVFSYALQEIRAWVEWLVYANQHGAPVPLWIKDLPWIGEWLTLQW 123

Query: 124 TKHLSHPQSL-KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            + +  P  L KI+S   +    +  I R+  + G   L   L+++FM+I LFF Y+DG 
Sbjct: 124 QQFIGEPHELGKIVSA--ISGQNLSGISRWVLQLGWNTLGLLLTLLFMLITLFFLYKDGE 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           S+++QLD +GE + PA W + SR+VP  + ST +GMT+IAIGEG+VLG AYW+AGVPS V
Sbjct: 182 SVAKQLDIVGERILPARWHRFSRVVPTTVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSAV 241

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           A GV+TA MA++PGGAP  FT +S+YL+  G++     LFLWG+IELFIVDKTLRP LVG
Sbjct: 242 AFGVLTAFMALVPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLVG 301

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           GPIKLPFLPTFFGL+GGV+TMG +GLF+GPVLMAL+  IW+E
Sbjct: 302 GPIKLPFLPTFFGLIGGVKTMGFVGLFVGPVLMALLIAIWRE 343


>gi|126172699|ref|YP_001048848.1| hypothetical protein Sbal_0447 [Shewanella baltica OS155]
 gi|125995904|gb|ABN59979.1| protein of unknown function UPF0118 [Shewanella baltica OS155]
          Length = 360

 Score =  317 bits (811), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 170/351 (48%), Positives = 236/351 (67%), Gaps = 7/351 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I R +++ ++   ++F   F  P L+ALI+ F+SWP+Y   ++K    S   A IA   +
Sbjct: 10  IGRSLLILLLCAGVFFFIDFLVPALAALIVCFSSWPLYQKLLAKCGGRSALAATIALCCI 69

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSH 129
           +   I+PL+F+F Y + E++  V  +V  NQHG PVP W+ D+P  G W +  W + +  
Sbjct: 70  VLGLIIPLVFVFSYALQEIRTWVDWLVFTNQHGSPVPLWIKDLPWMGEWLTLQWQQFIGE 129

Query: 130 PQSL-KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           P  L KI+S   +    +  I R+  + G   L   L+++FM+I LFF Y+DG  +++QL
Sbjct: 130 PHELGKIISA--ISGQNLSGISRWVLQLGWNTLGLLLTLLFMLITLFFLYKDGEQVAKQL 187

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D +GE + PA W   SR+VP  + ST +GMT+IAIGEG+VLG AYW+AGVPS VA GV+T
Sbjct: 188 DIVGERVLPARWHSFSRVVPATVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSAVAFGVLT 247

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           A MA++PGGAP  FT +S+YL+  G++     LFLWG+IELFIVDKTLRP LVGGPIKLP
Sbjct: 248 AFMALVPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLVGGPIKLP 307

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           FLPTFFGL+GGV+TMG +GLF+GPVLMAL+  IW+E    ++E  E I S+
Sbjct: 308 FLPTFFGLIGGVKTMGFVGLFVGPVLMALLVAIWRE---WLREEPEIIQSD 355


>gi|304410810|ref|ZP_07392427.1| protein of unknown function UPF0118 [Shewanella baltica OS183]
 gi|307305019|ref|ZP_07584769.1| protein of unknown function UPF0118 [Shewanella baltica BA175]
 gi|304350707|gb|EFM15108.1| protein of unknown function UPF0118 [Shewanella baltica OS183]
 gi|306912421|gb|EFN42845.1| protein of unknown function UPF0118 [Shewanella baltica BA175]
          Length = 360

 Score =  317 bits (811), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 170/351 (48%), Positives = 236/351 (67%), Gaps = 7/351 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I R +++ ++   ++F   F  P L+ALI+ F+SWP+Y   ++K    S   A IA   +
Sbjct: 10  IGRSLLILLLCAGVFFFIDFLVPALAALIVCFSSWPLYQKLLAKCGGRSALAATIALCCI 69

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSH 129
           +   I+PL+F+F Y + E++  V  +V  NQHG PVP W+ D+P  G W +  W + +  
Sbjct: 70  VLGLIIPLVFVFSYALQEIRTWVDWLVFTNQHGSPVPLWIKDLPWIGEWLTLQWQQFIGE 129

Query: 130 PQSL-KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           P  L KI+S   +    +  I R+  + G   L   L+++FM+I LFF Y+DG  +++QL
Sbjct: 130 PHELGKIISA--ISGQNLSGISRWVLQLGWNTLGLLLTLLFMLITLFFLYKDGEQVAKQL 187

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D +GE + PA W   SR+VP  + ST +GMT+IAIGEG+VLG AYW+AGVPS VA GV+T
Sbjct: 188 DIVGERVLPARWHSFSRVVPATVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSAVAFGVLT 247

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           A MA++PGGAP  FT +S+YL+  G++     LFLWG+IELFIVDKTLRP LVGGPIKLP
Sbjct: 248 AFMALVPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLVGGPIKLP 307

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           FLPTFFGL+GGV+TMG +GLF+GPVLMAL+  IW+E    ++E  E I S+
Sbjct: 308 FLPTFFGLIGGVKTMGFVGLFVGPVLMALLVAIWRE---WLREEPEIIQSD 355


>gi|153002392|ref|YP_001368073.1| hypothetical protein Shew185_3886 [Shewanella baltica OS185]
 gi|151367010|gb|ABS10010.1| protein of unknown function UPF0118 [Shewanella baltica OS185]
          Length = 359

 Score =  316 bits (809), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 170/352 (48%), Positives = 236/352 (67%), Gaps = 11/352 (3%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I R +++ ++   ++F   F  P L+ALI+ F+SWP+Y   ++K    S   A IA   +
Sbjct: 10  IGRSLLILLLCAGVFFFIDFLVPALAALIVCFSSWPLYQKLLAKCGGRSALAATIALCCI 69

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSH 129
           +   I+PL+F+F Y + E++  V  +V  NQHG PVP W+ D+P  G W +  W + +  
Sbjct: 70  VLGLIIPLVFVFSYALQEIRTWVDWLVFTNQHGSPVPLWIKDLPWMGEWLTLQWQQFIGE 129

Query: 130 PQSL-KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           P  L KI+S   +    +  I R+  + G   L   L+++FM+I LFF Y+DG  +++QL
Sbjct: 130 PHELGKIISA--ISGQNLSGISRWVLQLGWNTLGLLLTLLFMLITLFFLYKDGEQVAKQL 187

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D +GE + PA W   SR+VP  + ST +GMT+IAIGEG+VLG AYW+AGVPS VA GV+T
Sbjct: 188 DIVGERVLPARWHSFSRVVPATVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSAVAFGVLT 247

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           A MA++PGGAP  FT +S+YL+  G++     LFLWG+IELFIVDKTLRP LVGGPIKLP
Sbjct: 248 AFMALVPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLVGGPIKLP 307

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK-------ESIMAIKENK 353
           FLPTFFGL+GGV+TMG +GLF+GPVLMAL+  IW+       E+IM  +E+K
Sbjct: 308 FLPTFFGLIGGVKTMGFVGLFVGPVLMALLVAIWREWLREEPETIMGKQEDK 359


>gi|113968823|ref|YP_732616.1| hypothetical protein Shewmr4_0479 [Shewanella sp. MR-4]
 gi|113883507|gb|ABI37559.1| protein of unknown function UPF0118 [Shewanella sp. MR-4]
          Length = 372

 Score =  315 bits (807), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 168/342 (49%), Positives = 234/342 (68%), Gaps = 4/342 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +++   + R +++ ++   ++F   F  P L+ALI+ F+SWP+Y   + K    S   A 
Sbjct: 4   IISNAAVGRTLLILLLCAGVFFFIDFLVPALAALIVCFSSWPLYQKLMVKCGGRSALSAT 63

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELW 123
           IA V ++   I PL+F+F Y + E++  V  +V ANQHG PVP W+ D+P  G W +  W
Sbjct: 64  IALVLIILGLITPLIFVFSYALQEIRAWVEWLVYANQHGAPVPLWIKDLPWIGEWLTLQW 123

Query: 124 TKHLSHPQSL-KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            + +  P  L KI+S   +    +  I R+  + G   L   L+++FM+I LFF Y+DG 
Sbjct: 124 QQFIGEPHELGKIVSA--ISGQNLSGISRWVLQLGWNTLGLLLTLLFMLITLFFLYKDGE 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           S+++QLD +GE + PA W + SR+VP  + ST +GMT+IAIGEG+VLG AYW+AGVPS V
Sbjct: 182 SVAKQLDIVGERILPARWHRFSRVVPATVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSAV 241

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           A GV+TA MA++PGGAP  FT +S+YL+  G++     LFLWG+IELFIVDKTLRP LVG
Sbjct: 242 AFGVLTAFMALVPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLVG 301

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           GPIKLPFLPTFFGL+GGV+TMG +GLF+GPVLMAL+  IW+E
Sbjct: 302 GPIKLPFLPTFFGLIGGVKTMGFVGLFVGPVLMALLIAIWRE 343


>gi|187476842|ref|YP_784866.1| membrane protein [Bordetella avium 197N]
 gi|115421428|emb|CAJ47933.1| putative membrane protein [Bordetella avium 197N]
          Length = 369

 Score =  313 bits (803), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 168/346 (48%), Positives = 230/346 (66%), Gaps = 4/346 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I RW+++ ++   LYFL GF  P L+ALIIG  +WP+Y   +   +  +   A +A   V
Sbjct: 11  IARWLLLLVVAAGLYFLSGFLVPALAALIIGLATWPLYERVVRFCKGRNILAATLALCIV 70

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSH 129
           + + +VPL     Y   E     +  + AN+HG+ VP W+S +PG G   S+ WT +L  
Sbjct: 71  VLVVVVPLSMALTYAFKEASNFFAWALAANKHGVEVPFWISSLPGVGERLSQYWTTYLGE 130

Query: 130 PQSLKILSETFLKTNGIDFIPRFA-SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           P +L  + E  +    +  I R A S  G +F  + L+++FM+I LFF Y+DG S+  QL
Sbjct: 131 PHALGAMVE-LVSGEHLGNIYRMALSATGNVF-QWLLTLLFMLITLFFVYKDGKSMVAQL 188

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D LGE + PA WK+ SR+VP  + ST  GM +IA+GEG+VLG AYW+AGVPS V LGVIT
Sbjct: 189 DILGERVLPARWKRFSRVVPATVSSTVTGMCLIALGEGVVLGLAYWIAGVPSPVLLGVIT 248

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
             MA+IPGGAP+SFT VS+YL+   ++     LF+WG +ELFIVDKTLRP LVGGP+KLP
Sbjct: 249 GFMALIPGGAPLSFTLVSLYLVGSNHLVAGVGLFVWGTVELFIVDKTLRPRLVGGPVKLP 308

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           FLPTFFGLVGGV+TMG++GLF+GPVLMAL+  IW+E +   + + +
Sbjct: 309 FLPTFFGLVGGVKTMGIVGLFVGPVLMALLVAIWREWVRNTERDCD 354


>gi|119386380|ref|YP_917435.1| hypothetical protein Pden_3672 [Paracoccus denitrificans PD1222]
 gi|119376975|gb|ABL71739.1| protein of unknown function UPF0118 [Paracoccus denitrificans
           PD1222]
          Length = 396

 Score =  312 bits (800), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 157/360 (43%), Positives = 222/360 (61%), Gaps = 2/360 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  +L      RW+++ I+  S+YF  GF  PVL+A++I   SWP+      +     T+
Sbjct: 34  RPPLLTNISAARWLLLAIVAASIYFFHGFLVPVLAAMVIALASWPLRERAAHQLNLGRTW 93

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWAS 120
            A    + ++C  ++P+     Y   E+++ ++  +L N  G   P W+ D+P  G W  
Sbjct: 94  AAAALVLVLVCFLLIPIAMALIYAFRELRDWINWAILVNSSGAATPGWMVDLPQIGDWLD 153

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E W  ++  P  +  + +    +N I  I R A   G +     L+++FM+I LF  YRD
Sbjct: 154 ENWQTYIGRPGGISEIVQLVSGSN-IGAIYRGAVTAGTLAFHLALTLLFMLITLFVLYRD 212

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  I  Q+D +G  + P  W ++SR+VP  I ST  GMT+IAIGEG++LG AYWLAGVPS
Sbjct: 213 GDKIVAQIDQVGRRILPDRWSRLSRVVPATISSTVTGMTLIAIGEGVILGIAYWLAGVPS 272

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            V  GVIT  MA+IPGGAP+SFT VSIYL+  G+      LF+WG  ELF+VDKT+RP L
Sbjct: 273 PVTFGVITGFMALIPGGAPLSFTLVSIYLVASGSPVAGAALFVWGTCELFVVDKTIRPVL 332

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           VGGP+KLPFLPTFFGL+GGV+TMG++GLF+GPVLMAL+  IW+E    + E +++  S  
Sbjct: 333 VGGPVKLPFLPTFFGLIGGVKTMGIVGLFVGPVLMALLVSIWREWQRELSEEEQRQDSKL 392


>gi|24372067|ref|NP_716109.1| hypothetical protein SO_0472 [Shewanella oneidensis MR-1]
 gi|24345945|gb|AAN53554.1|AE015495_8 membrane protein, putative [Shewanella oneidensis MR-1]
          Length = 373

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 166/341 (48%), Positives = 230/341 (67%), Gaps = 2/341 (0%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +++   + R +++ ++   ++F   F  P L+ALII F+SWP+Y   + K    S   A 
Sbjct: 4   IISNAAVGRTLLILLLCAGVFFFIDFLVPALAALIICFSSWPLYKKLLVKCGGRSAVAAS 63

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELW 123
           IA V ++   I PL+F+F Y + E++     +V ANQHG PVP W+ D+P  G W +  W
Sbjct: 64  IALVLIVLGLITPLIFVFSYALQEIRIWAEWLVYANQHGAPVPLWIKDLPWVGEWLTLQW 123

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            + +  P  L  +       N +  I R+  + G   L   L+++FM+I LFF Y+DG S
Sbjct: 124 QQFIGEPHELGQIVSAISGQN-LTGISRWVLQLGWNTLGLLLTLLFMLITLFFLYKDGES 182

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +++Q+D +GE + PA W + SR+VP  + ST +GMT+IAIGEG+VLG AYW+AGVPS VA
Sbjct: 183 VAKQVDVVGERILPARWYRFSRVVPATVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSAVA 242

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            GV+TA MA+IPGGAP  FT +S+YL+  G++     LFLWG+IELFIVDKTLRP LVGG
Sbjct: 243 FGVLTAFMALIPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLVGG 302

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           PIKLPFLPTFFGL+GGV+TMG +GLF+GPVLMAL+  IW+E
Sbjct: 303 PIKLPFLPTFFGLIGGVKTMGFVGLFVGPVLMALLVAIWRE 343


>gi|120597402|ref|YP_961976.1| hypothetical protein Sputw3181_0571 [Shewanella sp. W3-18-1]
 gi|146294457|ref|YP_001184881.1| hypothetical protein Sputcn32_3370 [Shewanella putrefaciens CN-32]
 gi|120557495|gb|ABM23422.1| protein of unknown function UPF0118 [Shewanella sp. W3-18-1]
 gi|145566147|gb|ABP77082.1| protein of unknown function UPF0118 [Shewanella putrefaciens CN-32]
          Length = 360

 Score =  307 bits (787), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 168/351 (47%), Positives = 234/351 (66%), Gaps = 7/351 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I R +++ ++   ++F   F  P L+ALI+ F+SWP+Y   ++K    S   A IA V +
Sbjct: 10  IGRTLLILLLCAGVFFFIDFLVPALAALIVCFSSWPLYQKLLAKCRGRSALAATIALVLI 69

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSH 129
           +   ++PL F+F Y + E++  V  +V  NQHG  VP W+ ++P  G W +  W + +  
Sbjct: 70  VLGLVIPLAFVFSYALHEIRGWVEWLVHTNQHGAAVPVWIKELPLIGEWLTLQWHEFIGE 129

Query: 130 PQSL-KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           P  L KI+S   +    +  I R+  + G   L   L+++FM+I LFF Y+DG  +++QL
Sbjct: 130 PHELGKIISA--ISGQNLSGISRWVLQLGWNTLGLLLTLLFMLITLFFLYKDGEHVAKQL 187

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D +GE + PA W   SR+VP  + ST +GMT+IAIGEG+VLG AYW+AGVPS VA GV+T
Sbjct: 188 DIVGERVLPARWHSFSRVVPATVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSAVAFGVLT 247

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           A MA+IPGGAP  FT +S+YL+  G++     LFLWG+IELFIVDKTLRP LVGGPIKLP
Sbjct: 248 AFMALIPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLVGGPIKLP 307

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           FLPTFFGL+GGV+TMG +GLF+GPVLMAL+  IW+E    ++E  E I  +
Sbjct: 308 FLPTFFGLIGGVKTMGFVGLFVGPVLMALLVAIWREW---LREEPETIPMD 355


>gi|33594470|ref|NP_882114.1| hypothetical protein BP3604 [Bordetella pertussis Tohama I]
 gi|33595146|ref|NP_882789.1| hypothetical protein BPP0437 [Bordetella parapertussis 12822]
 gi|33599428|ref|NP_886988.1| hypothetical protein BB0439 [Bordetella bronchiseptica RB50]
 gi|33564545|emb|CAE43862.1| putative membrane protein [Bordetella pertussis Tohama I]
 gi|33565223|emb|CAE36021.1| putative membrane protein [Bordetella parapertussis]
 gi|33567024|emb|CAE30937.1| putative membrane protein [Bordetella bronchiseptica RB50]
          Length = 367

 Score =  307 bits (787), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 162/346 (46%), Positives = 228/346 (65%), Gaps = 2/346 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I RW+++ ++L  +YFL GF  P L+ALIIG  +WP++   +      +T  A +A V+V
Sbjct: 11  IARWLLLLVLLAGIYFLSGFLVPALAALIIGLATWPLFQRLVRAFGGRTTLAATLALVAV 70

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSH 129
           + + +VPL     Y + E     +  + AN+HG+ VP W+  +P  G   +E W  +L  
Sbjct: 71  IVILVVPLSLALSYAIKEAGNFFAWALAANKHGVDVPAWIMSLPMVGERLAEYWRTYLGE 130

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
           P +L  L E     +  +      S  G  F    L+++FM+I LFF Y+DG  +  QLD
Sbjct: 131 PHALGALVEIVSGEHLGNIYRMVLSATGNAF-QLLLTVLFMLITLFFVYKDGTRMVGQLD 189

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            LGE + PA W++ SR+VP  + ST  GM +IA+GEG+VLG AYW+AGVPS V LGVIT 
Sbjct: 190 ILGERVLPARWQRFSRVVPATVSSTVTGMCLIALGEGVVLGLAYWVAGVPSPVLLGVITG 249

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            MA++PGGAP+SFT VS+YL+  G++     LF+WG +ELFIVDKTLRP LVGGP+KLPF
Sbjct: 250 FMALVPGGAPLSFTLVSLYLVGSGHLVAGIGLFVWGTVELFIVDKTLRPRLVGGPVKLPF 309

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           LPTFFGLVGGV+TMG++GLF+GPVLMAL+  IW+E +  ++  +++
Sbjct: 310 LPTFFGLVGGVKTMGIVGLFVGPVLMALLVAIWREWVRNVERERDQ 355


>gi|311109042|ref|YP_003981895.1| hypothetical protein AXYL_05884 [Achromobacter xylosoxidans A8]
 gi|310763731|gb|ADP19180.1| hypothetical protein AXYL_05884 [Achromobacter xylosoxidans A8]
          Length = 366

 Score =  307 bits (787), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 160/350 (45%), Positives = 228/350 (65%), Gaps = 2/350 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I RW+++ ++L  +YFL GF  P L+ALIIG  SWP+Y   +++    +   A +A + V
Sbjct: 10  IARWLLLLVLLAGVYFLSGFLVPALAALIIGLASWPLYQRLVARCGGRTALAASLALLVV 69

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSH 129
           + + IVP+     Y + E     +  + AN+HG+ VP W++ +P  G    + W  ++  
Sbjct: 70  IVVLIVPMSLALSYAIKEASTFFAWAIAANRHGVDVPNWITSMPVVGERLGQYWEAYIGQ 129

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
           P +L  L E     +  +      +  G +F    L+++FM+I LFF Y+DG  +  QLD
Sbjct: 130 PHALGALVEAVSGEHLGNIYRMVLAATGNVF-QLLLTVLFMLITLFFVYKDGIRMVAQLD 188

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            LGE + PA W++ SR+VP  I ST  GM +IA+GEGLVLG AYW+AGVPS V LGV+T 
Sbjct: 189 VLGERILPARWQRFSRVVPATINSTVTGMGLIALGEGLVLGIAYWVAGVPSPVLLGVVTG 248

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            MA+IPGGAP+SFT VS+YL+  G++     L +WG++ELFIVDKTLRP LVGGP+KLPF
Sbjct: 249 FMALIPGGAPLSFTLVSLYLVGSGHLVAGIALMVWGSVELFIVDKTLRPRLVGGPVKLPF 308

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           LPTFFGLVGGV+TMG++GLF+GPVLMAL+  +W+E +    + ++    N
Sbjct: 309 LPTFFGLVGGVKTMGIVGLFVGPVLMALLVAVWREWVHHEVQERDAARIN 358


>gi|319427812|gb|ADV55886.1| protein of unknown function UPF0118 [Shewanella putrefaciens 200]
          Length = 360

 Score =  307 bits (786), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 168/351 (47%), Positives = 234/351 (66%), Gaps = 7/351 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I R +++ ++   ++F   F  P L+ALI+ F+SWP+Y   ++K    S   A IA V +
Sbjct: 10  IGRTLLILLLCAGVFFFIDFLVPALAALIVCFSSWPLYQKLLAKCRGRSALAATIALVLI 69

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSH 129
           +   ++PL F+F Y + E++  V  +V  NQHG  VP W+ ++P  G W +  W + +  
Sbjct: 70  VLGLVIPLAFVFSYALHEIRGWVEWLVHTNQHGAAVPVWIKELPLIGEWLTLQWHEFIGE 129

Query: 130 PQSL-KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           P  L KI+S   +    +  I R+  + G   L   L+++FM+I LFF Y+DG  +++QL
Sbjct: 130 PHELGKIISA--ISGQNLSGISRWVLQLGWNTLGLLLTLLFMLITLFFLYKDGEHVAKQL 187

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D +GE + PA W   SR+VP  + ST +GMT+IAIGEG+VLG AYW+AGVPS VA GV+T
Sbjct: 188 DIVGERVLPARWHSFSRVVPATVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSAVAFGVLT 247

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           A MA+IPGGAP  FT +S+YL+  G++     LFLWG+IELFIVDKTLRP LVGGPIKLP
Sbjct: 248 AFMALIPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLVGGPIKLP 307

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           FLPTFFGL+GGV+TMG +GLF+GPVLMAL+  IW+E    ++E  E I  +
Sbjct: 308 FLPTFFGLIGGVKTMGFVGLFVGPVLMALLVAIWREW---LREEPEVIQID 355


>gi|330428410|gb|AEC19744.1| membrane protein [Pusillimonas sp. T7-7]
          Length = 361

 Score =  306 bits (783), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 172/349 (49%), Positives = 228/349 (65%), Gaps = 5/349 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I RW+++ +ILV LYFL GF  PVL+ALII   SWP+Y   + +    +   A +A + V
Sbjct: 10  IARWLLVLLILVGLYFLSGFLVPVLAALIISLASWPLYQRLLRRCHGRNALAASLALIIV 69

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSH 129
           + + IVPL     Y + E    ++  + AN+HG+PVP W+  +P  G   +E WT +L  
Sbjct: 70  IIVLIVPLSLALSYAVQEASNFIAWALAANRHGMPVPAWILALPLVGARLAEYWTTYLGE 129

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
           P +L  + E     +  +      S  G +F    L +IFM+I LFF Y+DG  I  QLD
Sbjct: 130 PHALGEMVEIVSGEHLGNIYRMLLSATGDVF-RLLLGVIFMLITLFFVYKDGAHILGQLD 188

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +G+ + P  W++ SR+VP  I ST  GM +IA+GEG+VLG AYW+AGVPS V LGVIT 
Sbjct: 189 IVGDRILPGRWRRFSRVVPATINSTVTGMGLIALGEGVVLGLAYWIAGVPSPVLLGVITG 248

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            MA+IPGGAP+SF+ VS+YL+  G       LFLWG +ELFIVDKTLRP LVGGP+KLPF
Sbjct: 249 FMALIPGGAPLSFSVVSLYLVGSGEPMAGLGLFLWGTVELFIVDKTLRPRLVGGPVKLPF 308

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           LPTFFGL+GGV+TMGL+GLF+GPVLMAL+  IW+E    I E+  KI+ 
Sbjct: 309 LPTFFGLIGGVQTMGLVGLFVGPVLMALLVAIWREW---IHEDDNKIAK 354


>gi|317405134|gb|EFV85477.1| hypothetical protein HMPREF0005_04798 [Achromobacter xylosoxidans
           C54]
          Length = 373

 Score =  305 bits (781), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 163/351 (46%), Positives = 230/351 (65%), Gaps = 4/351 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I RW+++ ++L  +YFL GF  P L+ALIIG  SWP+Y   +++    +   A +A + V
Sbjct: 10  IARWLLLLVLLAGVYFLSGFLVPALAALIIGLASWPLYQRLVARCGGRTALAASLALLVV 69

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSH 129
           + + IVPL     Y + E     +  + AN+HG+ VP W++ +P  G   SE W  ++  
Sbjct: 70  IVVLIVPLSLALSYAIKEASTFFAWAIAANRHGVDVPNWITSMPVVGDRLSEYWQAYIGQ 129

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
           P +L  L E     +  +      +  G +F    L+++FM+I LFF Y+DG  +  QLD
Sbjct: 130 PHALGALVEAVSGEHLGNIYRMVLAATGNVF-QLLLTVLFMLITLFFVYKDGMRMVAQLD 188

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            LGE + PA W++ SR+VP  I ST  GM +IA+GEG+VLG AYW+AGVPS V LGV+T 
Sbjct: 189 VLGERILPARWQRFSRVVPATINSTVTGMGLIALGEGVVLGIAYWVAGVPSPVLLGVVTG 248

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            MA+IPGGAP+SFT VS+YL+  G++     L +WG++ELFIVDKTLRP LVGGP+KLPF
Sbjct: 249 FMALIPGGAPLSFTLVSLYLVGSGHVVAGIALMVWGSVELFIVDKTLRPRLVGGPVKLPF 308

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           LPTFFGLVGGV+TMG++GLF+GPVLMAL+  +W+E +    E  E+ ++  
Sbjct: 309 LPTFFGLVGGVKTMGIVGLFVGPVLMALLVAVWREWVH--HEEAERDTARL 357


>gi|77462103|ref|YP_351607.1| putative transmembrane transport protein [Rhodobacter sphaeroides
           2.4.1]
 gi|126460992|ref|YP_001042106.1| hypothetical protein Rsph17029_0215 [Rhodobacter sphaeroides ATCC
           17029]
 gi|77386521|gb|ABA77706.1| Putative transmembrane transport protein [Rhodobacter sphaeroides
           2.4.1]
 gi|126102656|gb|ABN75334.1| protein of unknown function UPF0118 [Rhodobacter sphaeroides ATCC
           17029]
          Length = 406

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 154/357 (43%), Positives = 216/357 (60%), Gaps = 4/357 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R  ++      RW+++ I+  S+YF  GF  PVL+ALII F SWP+          S  
Sbjct: 27  VRRPLITDISAARWLLLLILAASVYFFHGFLVPVLAALIIAFASWPLMLKLERSLPISRG 86

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWA 119
               +  + ++   ++P++    Y   E++  +   +  N  G P P WL  +P  G W 
Sbjct: 87  IAGALLVMMIVGFLVIPVMMALLYAFRELQAWIGWAINTNSTGAPPPVWLEALPHVGPWV 146

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            E W  ++  P ++  + +     N I  I R     G +     L+++FM+IALF FYR
Sbjct: 147 GEKWRTYIGEPGAISEMVQLVSGAN-IGTISRGILTAGTLAFHLALTLLFMLIALFIFYR 205

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  I+ Q+D +G  + P  W +ISR+VP  I ST  GMT+IA+GEG+VLG+AYW+AG+P
Sbjct: 206 DGERIAAQVDRVGTRILPDRWDRISRVVPATISSTVTGMTLIAMGEGVVLGTAYWIAGMP 265

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           S V LGVIT  MA+IPGGAP      S YL   G+ +    LFLWG +ELF+VDKT+RP 
Sbjct: 266 SPVTLGVITGFMALIPGGAPFCVIVASSYLAASGSPWAGLGLFLWGTVELFVVDKTIRPV 325

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE--SIMAIKENKE 354
           LVGGP+KLPFLPTFFGLVGG+ TMG++GLF+GPVLMAL+  +W+E    + I E +E
Sbjct: 326 LVGGPVKLPFLPTFFGLVGGIETMGIVGLFVGPVLMALLVAMWREWQREIDIAETEE 382


>gi|221641060|ref|YP_002527322.1| hypothetical protein RSKD131_2961 [Rhodobacter sphaeroides KD131]
 gi|221161841|gb|ACM02821.1| Hypothetical Protein RSKD131_2961 [Rhodobacter sphaeroides KD131]
          Length = 424

 Score =  300 bits (768), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 154/357 (43%), Positives = 216/357 (60%), Gaps = 4/357 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R  ++      RW+++ I+  S+YF  GF  PVL+ALII F SWP+          S  
Sbjct: 35  VRRPLITDISAARWLLLLILAASVYFFHGFLVPVLAALIIAFASWPLMLKLERSLPISRG 94

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWA 119
               +  + ++   ++P++    Y   E++  +   +  N  G P P WL  +P  G W 
Sbjct: 95  IAGALLVMMIVGFLVIPVMMALLYAFRELQAWIGWAINTNSTGAPPPVWLEALPHVGPWV 154

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            E W  ++  P ++  + +     N I  I R     G +     L+++FM+IALF FYR
Sbjct: 155 GEKWRTYIGEPGAISEMVQLVSGAN-IGTISRGILTAGTLAFHLALTLLFMLIALFIFYR 213

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  I+ Q+D +G  + P  W +ISR+VP  I ST  GMT+IA+GEG+VLG+AYW+AG+P
Sbjct: 214 DGERIAAQVDRVGTRILPDRWDRISRVVPATISSTVTGMTLIAMGEGVVLGTAYWIAGMP 273

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           S V LGVIT  MA+IPGGAP      S YL   G+ +    LFLWG +ELF+VDKT+RP 
Sbjct: 274 SPVTLGVITGFMALIPGGAPFCVIVASSYLAASGSPWAGLGLFLWGTVELFVVDKTIRPV 333

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE--SIMAIKENKE 354
           LVGGP+KLPFLPTFFGLVGG+ TMG++GLF+GPVLMAL+  +W+E    + I E +E
Sbjct: 334 LVGGPVKLPFLPTFFGLVGGIETMGIVGLFVGPVLMALLVAMWREWQREIDIAETEE 390


>gi|146279074|ref|YP_001169233.1| hypothetical protein Rsph17025_3044 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557315|gb|ABP71928.1| protein of unknown function UPF0118 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 398

 Score =  299 bits (766), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 154/356 (43%), Positives = 216/356 (60%), Gaps = 4/356 (1%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R+ ++      RW+++ I+  S+YF  GF  PVL+A+II F SWP+              
Sbjct: 20  RKPLITDISAARWLLLLILAASVYFFHGFLVPVLAAVIIAFASWPLLQRLERSLPIGRAG 79

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWAS 120
              +  + ++   ++P++    Y   E++  +   +  N  G P P WL  +P  G W  
Sbjct: 80  AGALLLMMIVGFLVIPVMMALLYAFRELQSWIGWAINTNSLGAPPPVWLETLPHVGPWIG 139

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E W  ++  P ++  + +     N I  I R     G +     L+++FM+IALF FYRD
Sbjct: 140 EKWRAYIGEPGAISEMVQLVSGAN-IGTISRGILTAGTLAFHLALTLLFMLIALFIFYRD 198

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  I+ Q+D +G  + P  W +ISR+VP  I ST  GMT+IA+GEG+VLG+AYW+AG+PS
Sbjct: 199 GERIAAQVDRVGSRILPDRWDRISRVVPATISSTVTGMTLIAMGEGVVLGTAYWIAGMPS 258

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            V LGVIT  MA++PGGAP    A S YL   G+ +    LFLWG IELFIVDKT+RP L
Sbjct: 259 PVTLGVITGFMALVPGGAPFCVVAASSYLAASGSPWAGLGLFLWGTIELFIVDKTIRPVL 318

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE--SIMAIKENKE 354
           VGGP+KLPFLPTFFGLVGG+ TMG++GLF+GPVLMAL+  +W+E    + I E +E
Sbjct: 319 VGGPVKLPFLPTFFGLVGGIETMGIVGLFVGPVLMALLVSMWREWQREIDIAEAEE 374


>gi|310815151|ref|YP_003963115.1| hypothetical protein EIO_0655 [Ketogulonicigenium vulgare Y25]
 gi|308753886|gb|ADO41815.1| putative membrane protein [Ketogulonicigenium vulgare Y25]
          Length = 390

 Score =  271 bits (694), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 142/358 (39%), Positives = 223/358 (62%), Gaps = 4/358 (1%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R+ ++  Q  +RW+++ ++  S+YF  GF  PVL+A++I F SWPI    +      +T+
Sbjct: 32  RKPVITDQAAVRWLLLVLLAASVYFFYGFIVPVLAAMVIAFASWPIRQRLVPHM--GTTW 89

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWAS 120
            A++  ++++   ++P+L    Y + E++     ++  N  G P P W+ ++P  G    
Sbjct: 90  AAIVMVLALVVCIVLPILMGVLYAIHEVRGWSMWLMEVNTTGAPTPEWMQELPFFGAQID 149

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E W + L  P  +  L +    +N ++ I R     G       L+++F+++ALF FY D
Sbjct: 150 ERWAEFLGRPGGVSALIQLVTGSNIMN-IYRGVLSAGYYSFHLFLNLVFVLVALFVFYHD 208

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  I  Q+  +G  L P  W ++S + P  + ST  GMT+IAIGEG++LG AYW+AGVP+
Sbjct: 209 GDKIVAQIGRVGRRLLPERWDRLSSVAPMTVSSTVTGMTLIAIGEGIILGLAYWVAGVPA 268

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
               G+IT  +A+IPGGAP++FT +S+YL+  G+      LF+WG +ELFIVDKT+RP+L
Sbjct: 269 PATFGLITGFLALIPGGAPLAFTTISLYLVASGSPIAGVGLFVWGTVELFIVDKTIRPWL 328

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           VGGP++LPFL TFFGL+GG++TMG++GLF+GPVLMAL+  IW+E    I+   E+   
Sbjct: 329 VGGPVRLPFLLTFFGLIGGIKTMGIVGLFVGPVLMALLMTIWREWQREIRAPYERAED 386


>gi|258542772|ref|YP_003188205.1| transporter [Acetobacter pasteurianus IFO 3283-01]
 gi|256633850|dbj|BAH99825.1| transporter [Acetobacter pasteurianus IFO 3283-01]
 gi|256636909|dbj|BAI02878.1| transporter [Acetobacter pasteurianus IFO 3283-03]
 gi|256639962|dbj|BAI05924.1| transporter [Acetobacter pasteurianus IFO 3283-07]
 gi|256643018|dbj|BAI08973.1| transporter [Acetobacter pasteurianus IFO 3283-22]
 gi|256646073|dbj|BAI12021.1| transporter [Acetobacter pasteurianus IFO 3283-26]
 gi|256649126|dbj|BAI15067.1| transporter [Acetobacter pasteurianus IFO 3283-32]
 gi|256652113|dbj|BAI18047.1| transporter [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655170|dbj|BAI21097.1| transporter [Acetobacter pasteurianus IFO 3283-12]
          Length = 390

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/331 (32%), Positives = 174/331 (52%), Gaps = 8/331 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK--KEESSTFLAVIATVSVMC 72
           + +FI+ V++Y ++GF   +    +    +WP+Y+   +K     S T L ++ T ++  
Sbjct: 53  LALFIVGVAVYTIQGFLPALAWGSVFAIATWPLYTRACNKWPHAASGTLLPLLFTAAMAL 112

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA-SELWTKHLSHPQ 131
           LF++PL  +    + E +  +  V  A ++G+PVP  +  +P G  A S+ W  HLS P+
Sbjct: 113 LFVIPLTLVTLEAVGEAQSALEWVSHAREYGVPVPDAIHRLPFGSSAISKWWEAHLSDPR 172

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            L  +    L + G+       S+       +C    F I+ LFF Y+DG S+ +Q   +
Sbjct: 173 DLSGMLGN-LDSKGVAVTRAVGSQVAHRATLFC----FSILTLFFLYKDGLSVIRQCRVV 227

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               F    + + R +   I  +  G+ ++ IGEGL+LG  Y  A  P     GVITA+ 
Sbjct: 228 SCRAFGKRGESVGRQIVASIHGSVQGLVLVGIGEGLLLGVVYVFAHAPHPALFGVITAVA 287

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           AMIP  A I+   VS+ +L++G+   A   F  GA+ +F  D  +RP L+GG  KLPFL 
Sbjct: 288 AMIPFCAMIAVGLVSLLILVQGSSVAAITTFCIGAVIIFTADHFIRPALIGGSTKLPFLW 347

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              G++GG  T GL+GLFIGP  MA + ++W
Sbjct: 348 VLLGILGGAETWGLIGLFIGPAAMAALNLLW 378


>gi|329114629|ref|ZP_08243388.1| UPF0118 membrane protein [Acetobacter pomorum DM001]
 gi|326696109|gb|EGE47791.1| UPF0118 membrane protein [Acetobacter pomorum DM001]
          Length = 398

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 108/331 (32%), Positives = 174/331 (52%), Gaps = 8/331 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK--KEESSTFLAVIATVSVMC 72
           + +FI+ V++Y ++GF   +    +    +WP+Y+   +K     S T L ++ T ++  
Sbjct: 61  LALFIVGVAVYTIQGFLPALAWGSVFAIATWPLYTRACNKWPHAASGTLLPLLFTAAMAL 120

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA-SELWTKHLSHPQ 131
           LF++PL  +    + E +  +  +  A ++G+PVP  +  +P G  A S+ W  HLS P+
Sbjct: 121 LFVIPLTLVTLEAVGEAQSALEWLSHAREYGVPVPDTIHRLPFGSAAISKWWEAHLSDPR 180

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            L  +    L + G+       S+       +C    F I+ LFF Y+DG S+ +Q   +
Sbjct: 181 DLSGMLGN-LDSKGVAVTRAVGSQVAHRATLFC----FSILTLFFLYKDGLSVIRQCRVV 235

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               F    + I R +   I  +  G+ ++ IGEGL+LG  Y  A  P     GVITA+ 
Sbjct: 236 SCRAFGKRGESIGRQIVASIHGSVQGLVLVGIGEGLLLGIIYVFAHAPHPALFGVITAVA 295

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           AMIP  A I+   VS+ +L++G+   A   F  GA+ +F  D  +RP L+GG  KLPFL 
Sbjct: 296 AMIPFCAMIAVGLVSLLILVQGSSVAAITTFCIGAVIIFTADHFIRPALIGGSTKLPFLW 355

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              G++GG  T GL+GLF+GP  MA + ++W
Sbjct: 356 VLLGILGGAETWGLIGLFVGPAAMAALNLLW 386


>gi|53804374|ref|YP_113737.1| hypothetical protein MCA1275 [Methylococcus capsulatus str. Bath]
 gi|53758135|gb|AAU92426.1| putative membrane protein [Methylococcus capsulatus str. Bath]
          Length = 354

 Score =  169 bits (428), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 104/323 (32%), Positives = 168/323 (52%), Gaps = 7/323 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKE--ESSTFLAVIATVSVMCLFIVPLLFLF 82
           + L GF  P+  A+++ FT WP Y     +        +L +  T+ +M L +VP  F  
Sbjct: 26  WVLHGFIMPIAWAVVLAFTVWPWYEHVYQRAPCWMRGGWLPLAMTLLMMVLLMVPATFGV 85

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQSLKILSETFL 141
                E++ L   ++     GI  P WL  +P  G W  E W++   +P+++K      L
Sbjct: 86  LVLGHEVQMLHRLLIKVQSSGIGAPDWLIQLPWVGGWIKETWSETFGNPETIK----NAL 141

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
              G+  +  +        L   +S    ++ALFF +RDG  + +Q+      LF +   
Sbjct: 142 NALGMGTVFSYTRDLAAQVLHRFMSGFVTLLALFFIFRDGHGLGRQILDRSVRLFGSAGA 201

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           + +R     +R T  GM ++ IG+G+VLG  YW  G+   V LG +TA++A++P  A + 
Sbjct: 202 RYARHAVTAVRGTVNGMLLVGIGKGVVLGLGYWAVGLSQPVLLGTLTAVVALVPFAAKLV 261

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F A SIYL+++G+      L ++G I   I D  +RP L+GG   +PFLPT  G+ GGV 
Sbjct: 262 FGAASIYLIVQGHAMAGIVLVVYGFIITLIADNYVRPTLIGGAANIPFLPTLLGIFGGVE 321

Query: 322 TMGLLGLFIGPVLMALIAVIWKE 344
            MG +GLFIGP +MA++  +W++
Sbjct: 322 AMGFVGLFIGPTVMAILISLWRD 344


>gi|254253952|ref|ZP_04947269.1| hypothetical protein BDAG_03238 [Burkholderia dolosa AUO158]
 gi|124898597|gb|EAY70440.1| hypothetical protein BDAG_03238 [Burkholderia dolosa AUO158]
          Length = 356

 Score =  166 bits (419), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 106/349 (30%), Positives = 174/349 (49%), Gaps = 10/349 (2%)

Query: 2   RETMLNP--QGIMRWMI-MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK--E 56
           R+T   P  Q I R M+    +L++L+ ++ F   +  A +I    WP+   F S     
Sbjct: 9   RDTAARPRAQQIARAMLYTAFLLLALWVIRDFIPAIAWACVISIAMWPLLERFESHPLFR 68

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-G 115
           +  T +A + T  +  L I+P+   F   + +  ++   +     +GIP+P  +  +P G
Sbjct: 69  DRPTLIATVITTGISLLVILPVAAGFTEAVAQAHDVRMWLHTIQDNGIPLPDVVGRLPYG 128

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
               +E W  +L HP      +      NG  FI  F  +FG       L   FM++ LF
Sbjct: 129 AAQITEWWQANLGHPLHA---ATAMHGVNGEKFIA-FGRQFGTKLAHALLEFGFMLVTLF 184

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
              R G  +S  L       F A   ++   +   +  T  G+ ++ +GEG +LG AY  
Sbjct: 185 VILRAGHKLSGALLHGARRAFGASGAELIDRMVDAVYGTVTGLVVVGLGEGALLGVAYAF 244

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
           AGVP    LG++TA+ AM+P  API F   +++L + G   +A  +  +G + +F+ +  
Sbjct: 245 AGVPHAALLGLVTAVAAMLPFCAPIVFCGAALWLFVHGATVSAVGVAAFGFVVVFVAEHF 304

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           +RP L+GG  +LPFL   FG++GG  T GL+GLF+GP LM ++ ++W E
Sbjct: 305 VRPVLIGGSTRLPFLLVLFGILGGAETFGLIGLFVGPALMTVLTMLWAE 353


>gi|296116563|ref|ZP_06835173.1| hypothetical protein GXY_12188 [Gluconacetobacter hansenii ATCC
           23769]
 gi|295976775|gb|EFG83543.1| hypothetical protein GXY_12188 [Gluconacetobacter hansenii ATCC
           23769]
          Length = 379

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 178/347 (51%), Gaps = 9/347 (2%)

Query: 2   RETMLNPQGIMRWMI-MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           RET    Q + R ++ +F ++++LY ++GF   ++   I    SWP+Y    ++   ++ 
Sbjct: 32  RETQ-RAQRVARGLLALFFVVMALYTVRGFLPSLIWGGIFAIASWPLYVRARTRWHAATH 90

Query: 61  FLAVIA--TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGM 117
            L + A  T+ +  +F+VP+         + + ++  +  A Q G+PVP+W+  +P G  
Sbjct: 91  QLLLPAAFTLGIALIFLVPVTLFGLEAARDAEGVLHLLNNARQSGMPVPQWIDHLPIGAQ 150

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                W  HL  P     L  +      +    +   + G       +  IF I+ LFF 
Sbjct: 151 GLRAWWESHLQDPDDFSALLGSLRIGQSV----KMTQQVGTQLAHRGILFIFSILTLFFL 206

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            +DG ++ +Q   +    F    ++I+  +   I  T  G+ ++ +GEG+V+G AY +AG
Sbjct: 207 LKDGDAVIRQCLVVSRRAFGKRGERIALQIIASIHGTVAGLVLVGMGEGVVMGLAYLIAG 266

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
            P     GV+TA+ AMIP  A I+   VS  LLIKG+   A  + L G   +F+ D  +R
Sbjct: 267 APHAFLFGVVTAVAAMIPFCAMIAIGIVSTLLLIKGSAVIAIVIMLVGLAVIFLADHLVR 326

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           P L+GG  +LPFL    G++GG  +  LLGLF+GP +MA++ ++W+ 
Sbjct: 327 PALIGGSTQLPFLWVLTGILGGAESWNLLGLFVGPAIMAVLHMLWRN 373


>gi|162148843|ref|YP_001603304.1| putative permease [Gluconacetobacter diazotrophicus PAl 5]
 gi|209545409|ref|YP_002277638.1| hypothetical protein Gdia_3296 [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161787420|emb|CAP57015.1| putative permease [Gluconacetobacter diazotrophicus PAl 5]
 gi|209533086|gb|ACI53023.1| protein of unknown function UPF0118 [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 381

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/351 (30%), Positives = 185/351 (52%), Gaps = 15/351 (4%)

Query: 1   MRETMLNPQGIMRWMI-MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE-- 57
           MRE     Q + R+++ MF  L++LY ++GF   ++   I    +WP+Y++   + +   
Sbjct: 21  MRERH-RVQRVARFLLAMFFTLLALYTIRGFLPSLIWGGIFAIVAWPLYAATRERWKSLP 79

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GG 116
             T L ++ T  +  +F+VP+         E + +V+    A   G+PVP W+  +P G 
Sbjct: 80  GGTILPLLFTTGIALIFLVPMGLFALEAAREAQSVVTWANEARHSGMPVPGWIQRLPLGS 139

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIA 173
              +  W  HL++P  +  L  +F   +G+    R  ++    G++F       IF I+ 
Sbjct: 140 ATLAGWWQDHLANPDDVSDLLHSFNIGHGMQVTQRVGTQIFHRGVLF-------IFAILT 192

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           LFF  +DG S+++Q   +    F    + I++ +   I  T  G+ ++ +GEG ++G AY
Sbjct: 193 LFFLLKDGESVTRQCLVVSRRAFGKRGETIAQQIIASIHGTVAGLVLVGLGEGALMGVAY 252

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
            +AG       GV TA+ AMIP  A I+  AV++ LL+KG    A  +   G   +FI D
Sbjct: 253 LIAGAQHPFLFGVFTAVAAMIPFCAVIAVAAVTLMLLVKGATIAAIAILALGLAVIFIAD 312

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             +RP L+GG  ++PFL    G++GGV +  LLGLF+GP +M+++ ++W+ 
Sbjct: 313 HFVRPALIGGSTQMPFLWVLTGILGGVESWNLLGLFVGPAIMSVLHLLWRN 363


>gi|189218730|ref|YP_001939371.1| Predicted permease, member of the PurR regulon [Methylacidiphilum
           infernorum V4]
 gi|189185588|gb|ACD82773.1| Predicted permease, member of the PurR regulon [Methylacidiphilum
           infernorum V4]
          Length = 350

 Score =  162 bits (409), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 105/329 (31%), Positives = 176/329 (53%), Gaps = 9/329 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA---TVSVMCLFIV 76
           +L++++ L+GF   +  A +I   +WP YS ++  K   +T L V +   T+ V  L   
Sbjct: 22  VLLAIWILRGFIVAMAWAFLIAIATWPFYS-WVRMKLPRNTPLWVSSLFFTLLVGALLFG 80

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQSLKI 135
           PL++  +    E   L   +  A + G P P W   IP  G W +  W  +L+ P++   
Sbjct: 81  PLVYGVFKAGQEAIILGQYIAHAQKEGAPAPDWFQRIPFIGNWLTVRWNLNLATPEAA-- 138

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S+T    +   F+ R+    G+  +     + F ++ LFF YRDG  + ++  +    +
Sbjct: 139 -SKTLAHIDS-AFLFRWGKTIGVQVIHRIEVLAFTLLTLFFLYRDGRVLGKKFLAFIRKI 196

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                +K ++ +  VIR T  G+ ++++GEG++LG AY + G+P  V LG +T I+AMIP
Sbjct: 197 LGTPGEKYAQHLVLVIRGTVNGLVLVSLGEGILLGIAYAIVGLPDPVTLGGVTGILAMIP 256

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
             AP  F   +++LL +G I  A  + ++G   LF+ D  +RP L+GG + LPF     G
Sbjct: 257 FAAPPVFCTAALFLLAQGMIIQAIAIVIFGFSVLFVADHFIRPALIGGAVNLPFYWVLLG 316

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +GG+ + GLLGLF GP ++A + V WK+
Sbjct: 317 TLGGLSSFGLLGLFAGPTIIAALLVAWKD 345


>gi|254248509|ref|ZP_04941829.1| hypothetical protein BCPG_03340 [Burkholderia cenocepacia PC184]
 gi|124875010|gb|EAY65000.1| hypothetical protein BCPG_03340 [Burkholderia cenocepacia PC184]
          Length = 356

 Score =  162 bits (409), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 99/325 (30%), Positives = 160/325 (49%), Gaps = 7/325 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKK--EESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+   F S +      T +A + T S+  L ++P+    
Sbjct: 35  WVIRDFIPAIAWACVIAIAMWPLLKRFESHRLFRNRPTLIATVITTSISLLVVLPVAVAT 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFL 141
                +  +L   +     +GIP+P  +S +P G    +E W  +L HP      +    
Sbjct: 95  TQAFAQAHDLREWLHTIQDNGIPLPDVVSRLPYGAAQITEWWQANLGHPLHA---ATAMH 151

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             NG  FI  F  +FG       L   FM++ LF   R G  +S  L       F     
Sbjct: 152 GVNGEKFIA-FGRQFGTKLAHVLLEFGFMLVTLFVILRAGHKLSGALLQGARRAFGRNGA 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           ++   +   +  T  G+ ++ +GEG +LG AY LAGVP    LG++TA+ AM+P  AP+ 
Sbjct: 211 ELIERMVAAVYGTVTGLVVVGLGEGALLGVAYALAGVPHAALLGLVTAVAAMLPFCAPVV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G    A  +   G I +F+ +  +RP L+GG  +LPFL   FG++GG  
Sbjct: 271 FCGAALWLFVQGATMWAVVVAALGFIVVFVAEHFVRPVLIGGSTRLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKESI 346
           T GL+GLF+GP LM ++ ++W E I
Sbjct: 331 TFGLIGLFVGPALMTVLTMLWAEWI 355


>gi|330994022|ref|ZP_08317952.1| UPF0118 inner membrane protein ydiK [Gluconacetobacter sp. SXCC-1]
 gi|329758968|gb|EGG75482.1| UPF0118 inner membrane protein ydiK [Gluconacetobacter sp. SXCC-1]
          Length = 399

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/322 (31%), Positives = 165/322 (51%), Gaps = 8/322 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISK--KEESSTFLAVIATVSVMCLFIVPLLFLF 82
           Y ++GF   ++   I    SWP+Y+    +         L V  T+++  +F+ PL    
Sbjct: 74  YTVRGFLPSLIWGCIFAIASWPLYARARQRWPSRAHQAMLPVAFTLAIALIFLGPLALFG 133

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW-TKHLSHPQSLKILSETFL 141
                E + ++  +  A   GIPVP W+S +P G    E W   HL  P  +  L  +  
Sbjct: 134 LEAGREAEGVLRLLNDARHSGIPVPPWISRLPYGQQTIETWWNDHLKDPADISALLGSMN 193

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
              G+    +   + G   L   L  IF I+ LFF  +DG ++ +Q  ++    F    +
Sbjct: 194 IGQGM----KVTQQLGSQVLHRGLLFIFAILTLFFLLKDGDAVIRQSLNVSRRAFGKRGE 249

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +I+  +   +  +  G+ ++ IGEG+++G AY +AG P     GVITAI AMIP  A I+
Sbjct: 250 RIALQMIASVHGSVSGLVLVGIGEGMLMGLAYLVAGAPHPFLFGVITAIAAMIPFCALIA 309

Query: 262 FTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
             AV++ LL+  G +  A  + L+G   +F+ D  +RP L+GG  +LPFL    G++GG 
Sbjct: 310 IGAVALLLLVNTGAVLTAVAIVLFGLAVIFLADHLVRPALIGGTTQLPFLWVLMGILGGA 369

Query: 321 RTMGLLGLFIGPVLMALIAVIW 342
            +  LLGLF+GP +MA++ ++W
Sbjct: 370 ESWSLLGLFVGPAIMAVLHMLW 391


>gi|116692369|ref|YP_837902.1| hypothetical protein Bcen2424_4274 [Burkholderia cenocepacia
           HI2424]
 gi|116650369|gb|ABK11009.1| protein of unknown function UPF0118 [Burkholderia cenocepacia
           HI2424]
          Length = 356

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/325 (30%), Positives = 160/325 (49%), Gaps = 7/325 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKK--EESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+   F S +      T +A + T ++  L ++P+    
Sbjct: 35  WVIRDFIPAIAWACVIAIAMWPLLKRFESHRLFRSRPTLIATVITAAISLLVVLPVAVAT 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFL 141
                +  +L   +     +GIP+P  +S +P G    +E W  +L HP      +    
Sbjct: 95  TQAFAQAHDLREWLHTVQDNGIPLPDVVSRLPYGAAQITEWWQANLGHPLHA---ATAMH 151

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             NG  FI  F  +FG       L   FM++ LF   R G  +S  L       F     
Sbjct: 152 GVNGEKFIA-FGRQFGTKLAHVLLEFGFMLVTLFVILRAGHKLSGALLQGARRAFGRNGA 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           ++   +   +  T  G+ ++ +GEG +LG AY LAGVP    LG++TA+ AM+P  AP+ 
Sbjct: 211 ELIERMVAAVYGTVTGLVVVGLGEGALLGVAYALAGVPHAALLGLVTAVAAMLPFCAPVV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G    A  +   G I +F+ +  +RP L+GG  +LPFL   FG++GG  
Sbjct: 271 FCGAALWLFVQGATMWAVVVAALGFIVVFVAEHFVRPVLIGGSTRLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKESI 346
           T GL+GLF+GP LM ++ ++W E I
Sbjct: 331 TFGLIGLFVGPALMTVLTMLWAEWI 355


>gi|206563261|ref|YP_002234024.1| hypothetical protein BCAM1409 [Burkholderia cenocepacia J2315]
 gi|198039301|emb|CAR55266.1| putative membrane protein [Burkholderia cenocepacia J2315]
          Length = 356

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 162/325 (49%), Gaps = 7/325 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKK--EESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+   F S +   +  T +A + T ++  L ++P+    
Sbjct: 35  WVIRDFIPAIAWACVIAIAMWPLLKRFESHRLFRDRPTLIATVITAAISLLVVLPVAVAT 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFL 141
              + +  +L   +     +GIP+P  +S +P G    +E W  +L HP           
Sbjct: 95  TQAIAQAHDLREWLHTVQDNGIPLPDVVSRLPYGAAQITEWWQANLGHPLHAATAMHGVN 154

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
               I F  +F ++   + L++     FM++ LF   R G  +S  L       F     
Sbjct: 155 SEKFIAFGRQFGTKLAHVLLEFG----FMLVTLFVILRAGHKLSGALLQGARRAFGRNGA 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           ++   +   +  T  G+ ++ +GEG +LG AY LAGVP    LG++TA+ AM+P  AP+ 
Sbjct: 211 ELIERMVAAVYGTVTGLVVVGLGEGALLGVAYALAGVPHAALLGLVTAVAAMLPFCAPVV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G    A  +   G I +F+ +  +RP L+GG  +LPFL   FG++GG  
Sbjct: 271 FCGAALWLFVQGATMWAVVVAALGFIVVFVAEHFVRPVLIGGSTRLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKESI 346
           T GL+GLF+GP LM ++ ++W E I
Sbjct: 331 TFGLIGLFVGPALMTVLTMLWAEWI 355


>gi|289164173|ref|YP_003454311.1| predicted permease [Legionella longbeachae NSW150]
 gi|288857346|emb|CBJ11174.1| putative predicted permease [Legionella longbeachae NSW150]
          Length = 359

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 106/343 (30%), Positives = 182/343 (53%), Gaps = 17/343 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSS---FISKKEESSTFLAVIATVSVMCLFI 75
           II +SL+ +  F   ++ A II   ++P+Y     F   K++ S  L       ++ L +
Sbjct: 17  IIALSLFIIHRFIPSMIWASIIVIATYPLYERWRRFFGSKDDLSALLFTTLIGLLLLLPL 76

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW-ASEL---WTKHLSHPQ 131
             L+ L    + E++  ++ +   N+ G   P +L + P   W  S+L   W  ++  P 
Sbjct: 77  SWLVGLL---IKELQIFINFLQSLNEKGGMAPEFLKNFP---WIGSDLVVYWDNNIGKPG 130

Query: 132 SLK-ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +K +LS   L      +   +  + G       + + F +++LFFFYRDG  +  Q+  
Sbjct: 131 MIKGLLSNIHLSLTPTSY---YVKQIGSNLAHRSVQVGFTLLSLFFFYRDGDRLITQIYL 187

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +GE+     W + +  +PK +R+T  G  ++ +G G ++G  Y L G P+   +G ITA+
Sbjct: 188 VGENCLGKRWFRYADRLPKALRATVNGTIVVGLGVGFLMGVCYGLVGFPAPTLVGFITAL 247

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            AMIP   PI F  V++ L   G++F A  + +WG + +F+ D  ++P L+GG I+LPFL
Sbjct: 248 AAMIPFVVPIVFITVAMILFAFGSMFGAIAVLVWGTLVMFVADHFIKPALIGGAIELPFL 307

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              FG++GGV T+GLLGLF+GP++M L   +W+E  +    N+
Sbjct: 308 AVLFGILGGVETLGLLGLFVGPLVMVLFVTLWQEPQIRTDCNQ 350


>gi|170735629|ref|YP_001776889.1| hypothetical protein Bcenmc03_3243 [Burkholderia cenocepacia MC0-3]
 gi|169817817|gb|ACA92399.1| protein of unknown function UPF0118 [Burkholderia cenocepacia
           MC0-3]
          Length = 356

 Score =  159 bits (401), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 161/325 (49%), Gaps = 7/325 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKK--EESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+   F S +      T +A + T ++  L ++P+    
Sbjct: 35  WVIRDFIPAIAWACVIAIAMWPLLKRFESHRLFRSRPTLIATVITAAISLLVVLPVAVAT 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFL 141
              + +  +L   +     +GIP+P  +S +P G    +E W  +L HP           
Sbjct: 95  TQAIAQAHDLREWLHSIQDNGIPLPDVISRLPYGAAQITEWWQANLGHPLHAATAMHGVN 154

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
               I F  +F ++   + L++     FM++ LF   R G  +S  L       F     
Sbjct: 155 SEKFIAFGRQFGTKLAHVLLEFG----FMLVTLFVILRAGHKLSGALLQGARRAFGRNGA 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           ++   +   +  T  G+ ++ +GEG +LG AY LAGVP    LG++TA+ AM+P  AP+ 
Sbjct: 211 ELIERMVAAVYGTVTGLVVVGLGEGALLGVAYALAGVPHAALLGLVTAVAAMLPFCAPVV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G    A  +   G I +F+ +  +RP L+GG  +LPFL   FG++GG  
Sbjct: 271 FCGAALWLFVQGATMWAVVVAALGFIVVFVAEHFVRPVLIGGSTRLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKESI 346
           T GL+GLF+GP LM ++ ++W E I
Sbjct: 331 TFGLIGLFVGPALMTVLTMLWAEWI 355


>gi|27383175|ref|NP_774704.1| hypothetical protein blr8064 [Bradyrhizobium japonicum USDA 110]
 gi|27356349|dbj|BAC53329.1| blr8064 [Bradyrhizobium japonicum USDA 110]
          Length = 387

 Score =  155 bits (392), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 100/328 (30%), Positives = 168/328 (51%), Gaps = 6/328 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA-TVSVMCLFIVP 77
           I+ +SL+   GF + ++ A I+    WP+Y +F ++     +  +  A T  V  +   P
Sbjct: 52  IVALSLWTAAGFLSALIWATILAIALWPLYVAFANRVMSGPSGWSAFAFTCFVAVILFTP 111

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKIL 136
           +    Y    +  E+ + +  A + GI VP W++ +P     A + W  +LS PQ+    
Sbjct: 112 MALAIYQVAQQSGEIAAWLKKARESGIEVPDWIARLPIAAEIAQQWWRANLSDPQA---- 167

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           +  +LK    D      +  G   L     ++F ++ALF    +G S++ +     E + 
Sbjct: 168 ATGWLKAISADNASDLFNSLGGQLLHRMFMLLFSLVALFVLLSNGRSVASRFLETSERIL 227

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               + +   +   IR T  G  ++A+GEGL++G  Y +AGVP+ V   + T   AM+P 
Sbjct: 228 GHPGEGVVEKIVDSIRGTVNGTVVVAVGEGLLIGVGYLVAGVPNAVMFTIFTTAFAMLPF 287

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           GA  +F+A ++ L+  GN   A  +F WGA+ +   D  + P LVGG  +LPFL  F G+
Sbjct: 288 GAWAAFSAAALTLISNGNEAAAAGVFCWGAVIMLAGDHFVWPVLVGGSARLPFLFAFVGI 347

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            GG+   GL+GLF+GPV+MA +  +W+E
Sbjct: 348 FGGLAAFGLIGLFLGPVVMAALLTVWRE 375


>gi|188584250|ref|YP_001927695.1| hypothetical protein Mpop_5064 [Methylobacterium populi BJ001]
 gi|179347748|gb|ACB83160.1| protein of unknown function UPF0118 [Methylobacterium populi BJ001]
          Length = 359

 Score =  155 bits (392), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 103/323 (31%), Positives = 170/323 (52%), Gaps = 7/323 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISK--KEESSTFLAVIATVSVMCLFIVPLLFLF 82
           Y L GF   ++ AL++    WP+++    +      +     + T  V  L ++P+  L 
Sbjct: 32  YILHGFLRALVWALVLAIALWPLFNRARRRFPPGRHNILWPAVFTGLVAGLLLLPIAGLA 91

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA-SELWTKHLSHPQSLKILSETFL 141
                E  +L++    A ++GIPVP +++ +P G  A +E W  HL+H      ++E   
Sbjct: 92  VEAGREAHDLLAYAREAERNGIPVPDFVAHLPYGAAAVTEWWNAHLAHAGLAHEVTERLN 151

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            T+  D         G   +   +   F ++ALFF +R+G ++  Q     + LF    +
Sbjct: 152 TTSNRDLT----RTLGAGLVHRVVLFGFCLLALFFLFREGDAVVAQSLRASQRLFGPRGE 207

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +++R +   +  T  G+ ++ IGEG +LG  Y LAGVP  V  G +TA+ AMIP GAP++
Sbjct: 208 RVARQMVASVHGTVDGLVLVGIGEGFLLGIVYALAGVPHPVLFGALTAVAAMIPFGAPLA 267

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   ++ LL  G +  A  +   G +  F+ D  +RP L+GG  +LPFL    G++GGV 
Sbjct: 268 FGLAAVLLLAGGAVVPAAIVVAAGFVITFVADHFVRPALIGGTTRLPFLWVLLGILGGVE 327

Query: 322 TMGLLGLFIGPVLMALIAVIWKE 344
           T GLLGLF+GP +MA + ++W+E
Sbjct: 328 TFGLLGLFVGPAVMAALILLWRE 350


>gi|209516308|ref|ZP_03265165.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
 gi|209503244|gb|EEA03243.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
          Length = 364

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 169/327 (51%), Gaps = 7/327 (2%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK--EESSTFLAVIATVSVMCLFIV 76
           ++L++L+ ++ F   V  A ++    WP+       +     +T LA + T+ +  L ++
Sbjct: 37  LVLLALWVVRDFIVVVAWAGVVSIALWPLLHKVAGSRWFRGRTTVLATVFTLVIAVLVLL 96

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM-WASELWTKHLSHPQSLKI 135
           P+       + E  EL        ++GI VP +++ +P G+   +  W  +L+ P    +
Sbjct: 97  PVALGLAQALREAHELSEWFRGVQENGIAVPDFVNRLPFGVPQITAWWQANLAQP----L 152

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                +K    + +     +FG   L   +   FM++ LF  ++ G  +S  L       
Sbjct: 153 RDSAAMKGLHSETVMTLGRQFGARALHAAMVFAFMLVTLFVIFQAGPRLSGSLLKAARRG 212

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F      +   +   +R T  G+ ++  GEG++LG AY + GVP    LG +TAI AM+P
Sbjct: 213 FGDSGADLVEQMATAVRGTVSGLIVVGAGEGVLLGFAYLVTGVPHAALLGFVTAIAAMLP 272

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
             API+F   +++LL++G++  A  L ++GAI +FI +  +RP L+G   +LPFL   FG
Sbjct: 273 FCAPITFGLAALWLLVQGSVVPAAGLAVFGAIVVFIAEHFVRPVLIGNSTRLPFLLVLFG 332

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIW 342
           ++GG  T GLLG+FIGP LM ++ V+W
Sbjct: 333 ILGGAETFGLLGIFIGPALMTVLMVLW 359


>gi|221196526|ref|ZP_03569573.1| putative membrane protein [Burkholderia multivorans CGD2M]
 gi|221203195|ref|ZP_03576214.1| putative membrane protein [Burkholderia multivorans CGD2]
 gi|221177129|gb|EEE09557.1| putative membrane protein [Burkholderia multivorans CGD2]
 gi|221183080|gb|EEE15480.1| putative membrane protein [Burkholderia multivorans CGD2M]
          Length = 356

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 160/323 (49%), Gaps = 7/323 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKK--EESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+     +        T +A I T +V  L ++P+    
Sbjct: 35  WVIRAFIPAIAWACVIAIAMWPLLQRIEANALLRNRPTLVATIVTAAVSLLVVLPVAIAL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFL 141
              +++  +L         +GIP+P  ++ +P G    ++ W  +L HP    + + T +
Sbjct: 95  TQAIVQAHDLREWFQSIRDNGIPLPDVVNRLPYGAAQITQWWQTNLGHP----LHAATAM 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                + +  F  +FG           FM++ LF   R G  ++ +L    +  F     
Sbjct: 151 HGASGEKVLAFGRQFGTRVAHAVFEFGFMLVTLFVIVRAGHRLAGELLQGAQRAFGHDGA 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            +   +   ++ T  G+ ++ +GEG +LG AY LAGVP    LGV+TA+ AM+P  AP+ 
Sbjct: 211 HLIERMVAAVQGTVTGLVVVGLGEGALLGVAYALAGVPHAALLGVVTAVAAMLPFCAPLV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G    A  + + G + +F+ +  +RP L+G   +LPFL   FG++GG  
Sbjct: 271 FCGAALWLFVQGATAWAVVIAVLGFVVVFVAEHFVRPVLIGNSARLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKE 344
           T GL+GLF+GP LM ++ V+W E
Sbjct: 331 TFGLIGLFVGPALMTVLTVLWAE 353


>gi|189352951|ref|YP_001948578.1| putative permease [Burkholderia multivorans ATCC 17616]
 gi|189336973|dbj|BAG46042.1| putative permease [Burkholderia multivorans ATCC 17616]
          Length = 356

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 160/323 (49%), Gaps = 7/323 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKK--EESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+     +        T +A I T +V  L ++P+    
Sbjct: 35  WVIRAFIPAIAWACVIAIAMWPLLQRIEANALLRNRPTLVATIVTAAVSLLVVLPVAMAL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFL 141
              +++  +L         +GIP+P  ++ +P G    ++ W  +L HP    + + T +
Sbjct: 95  TQAIVQAHDLREWFQSIRDNGIPLPDVVNRLPYGAAQITQWWQTNLGHP----LHAATAM 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                + +  F  +FG           FM++ LF   R G  ++ +L    +  F     
Sbjct: 151 HGASGEKVLAFGRQFGTRVAHAVFEFGFMLVTLFVIVRAGHRLAGELLQGAQRAFGHDGA 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            +   +   ++ T  G+ ++ +GEG +LG AY LAGVP    LGV+TA+ AM+P  AP+ 
Sbjct: 211 HLIERMVAAVQGTVTGLVVVGLGEGALLGVAYALAGVPHAALLGVVTAVAAMLPFCAPLV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G    A  + + G + +F+ +  +RP L+G   +LPFL   FG++GG  
Sbjct: 271 FCGAALWLFVQGATVWAIVIAVLGFVVVFVAEHFVRPVLIGNSARLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKE 344
           T GL+GLF+GP LM ++ V+W E
Sbjct: 331 TFGLIGLFVGPALMTVLTVLWAE 353


>gi|161520866|ref|YP_001584293.1| hypothetical protein Bmul_4321 [Burkholderia multivorans ATCC
           17616]
 gi|160344916|gb|ABX18001.1| protein of unknown function UPF0118 [Burkholderia multivorans ATCC
           17616]
          Length = 380

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 160/323 (49%), Gaps = 7/323 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKK--EESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+     +        T +A I T +V  L ++P+    
Sbjct: 59  WVIRAFIPAIAWACVIAIAMWPLLQRIEANALLRNRPTLVATIVTAAVSLLVVLPVAMAL 118

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFL 141
              +++  +L         +GIP+P  ++ +P G    ++ W  +L HP    + + T +
Sbjct: 119 TQAIVQAHDLREWFQSIRDNGIPLPDVVNRLPYGAAQITQWWQTNLGHP----LHAATAM 174

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                + +  F  +FG           FM++ LF   R G  ++ +L    +  F     
Sbjct: 175 HGASGEKVLAFGRQFGTRVAHAVFEFGFMLVTLFVIVRAGHRLAGELLQGAQRAFGHDGA 234

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            +   +   ++ T  G+ ++ +GEG +LG AY LAGVP    LGV+TA+ AM+P  AP+ 
Sbjct: 235 HLIERMVAAVQGTVTGLVVVGLGEGALLGVAYALAGVPHAALLGVVTAVAAMLPFCAPLV 294

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G    A  + + G + +F+ +  +RP L+G   +LPFL   FG++GG  
Sbjct: 295 FCGAALWLFVQGATVWAIVIAVLGFVVVFVAEHFVRPVLIGNSARLPFLLVLFGILGGAE 354

Query: 322 TMGLLGLFIGPVLMALIAVIWKE 344
           T GL+GLF+GP LM ++ V+W E
Sbjct: 355 TFGLIGLFVGPALMTVLTVLWAE 377


>gi|163853947|ref|YP_001641990.1| hypothetical protein Mext_4551 [Methylobacterium extorquens PA1]
 gi|163665552|gb|ABY32919.1| protein of unknown function UPF0118 [Methylobacterium extorquens
           PA1]
          Length = 359

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 170/332 (51%), Gaps = 7/332 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISK--KEESSTFLAVIATVSVMCLFIVPLLF 80
            LY L GF   ++ A+++    WP++     +      +     + T  V  + ++P+  
Sbjct: 30  GLYILSGFLRALVWAVVLAIALWPLFVRAHRRFPPGRHNILWPAVFTGLVALVLLLPIAV 89

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA-SELWTKHLSHPQSLKILSET 139
           L      E  +L++    A ++GIPVP +++ +P G  A +E W  HL+H      LSE 
Sbjct: 90  LAVEAGREAHDLLAYAREAERNGIPVPDFVARLPYGAAAVTEWWNAHLAHAGLAHELSER 149

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
              T+  D         G   +   +   F ++ALFF +R+G ++  Q       LF   
Sbjct: 150 LNTTSNRDLT----RSLGAGLVHRAVLFGFCLLALFFLFREGDTVIAQSLRASHRLFGPR 205

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            ++++R +   +  T  G+ ++ IGEG +LG  Y  AGVP  V  G +TA+ AMIP GAP
Sbjct: 206 GERVARQMVASVHGTVDGLVLVGIGEGFLLGIVYAFAGVPHPVLFGALTAVAAMIPFGAP 265

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           ++F   ++ LL  G +  A  +   G +  F+ D  +RP L+GG  +LPFL    G++GG
Sbjct: 266 LAFGLAAVLLLAGGAVVPAAIVVAAGFVVTFVADHFVRPALIGGTTRLPFLWVLLGILGG 325

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           V T GLLGLF+GP +MA + ++W+E     +E
Sbjct: 326 VETFGLLGLFVGPAVMAALILLWREFTEGSEE 357


>gi|221210158|ref|ZP_03583139.1| putative membrane protein [Burkholderia multivorans CGD1]
 gi|221170846|gb|EEE03312.1| putative membrane protein [Burkholderia multivorans CGD1]
          Length = 356

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 160/323 (49%), Gaps = 7/323 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKK--EESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+     +        T +A I T +V  L ++P+    
Sbjct: 35  WVIRAFIPAIAWACVIAIAMWPLLQRIEANALLRNRPTLVATIVTAAVSLLVVLPVAIAL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFL 141
              +++  +L         +GIP+P  ++ +P G    ++ W  +L HP    + + T +
Sbjct: 95  TQAIVQAHDLREWFQSIRDNGIPLPDVVNRLPYGAAQITQWWQTNLGHP----LHAATAM 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                + +  F  +FG           FM++ LF   R G  ++ +L    +  F     
Sbjct: 151 HGASGEKVLAFGRQFGTRVAHAVFEFGFMLVTLFVIVRAGHRLAGELLQGAQRAFGHDGA 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            +   +   ++ T  G+ ++ +GEG +LG AY LAGVP    LGV+TA+ AM+P  AP+ 
Sbjct: 211 HLIERMVAAVQGTVTGLVVVGLGEGALLGVAYALAGVPHAALLGVVTAVAAMLPFCAPLV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G    A  + + G + +F+ +  +RP L+G   +LPFL   FG++GG  
Sbjct: 271 FCGAALWLFVQGATAWAIVIAVLGFVVVFVAEHFVRPVLIGNSARLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKE 344
           T GL+GLF+GP LM ++ V+W E
Sbjct: 331 TFGLIGLFVGPALMTVLTVLWAE 353


>gi|218532888|ref|YP_002423704.1| hypothetical protein Mchl_5011 [Methylobacterium chloromethanicum
           CM4]
 gi|218525191|gb|ACK85776.1| protein of unknown function UPF0118 [Methylobacterium
           chloromethanicum CM4]
          Length = 359

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 170/332 (51%), Gaps = 7/332 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISK--KEESSTFLAVIATVSVMCLFIVPLLF 80
            LY L GF   ++ A+++    WP++     +      +     + T  V  + ++P+  
Sbjct: 30  GLYILSGFLRALVWAVVLAIALWPLFVRAHRRFPPGRHNILWPAVFTGLVALVLLLPIAV 89

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA-SELWTKHLSHPQSLKILSET 139
           L      E  +L++    A ++GIPVP +++ +P G  A +E W  HL+H      LSE 
Sbjct: 90  LAVEAGREAHDLLAYAREAERNGIPVPDFVAHLPYGAAAITEWWNAHLAHAGLAHELSER 149

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
              T+  D         G   +   +   F ++ALFF +R+G ++  Q       LF   
Sbjct: 150 LNTTSNRDLT----RSLGAGLVHRVVLFGFCLLALFFLFREGDTVIAQSLRASHRLFGPR 205

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            ++++R +   +  T  G+ ++ IGEG +LG  Y  AGVP  V  G +TA+ AMIP GAP
Sbjct: 206 GERVARQMVASVHGTVDGLVLVGIGEGFLLGIVYAFAGVPHPVLFGALTAVAAMIPFGAP 265

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           ++F   ++ LL  G +  A  +   G +  F+ D  +RP L+GG  +LPFL    G++GG
Sbjct: 266 LAFGLAAVLLLAGGAVVPAAIVVAAGFVVTFVADHFVRPALIGGTTRLPFLWVLLGILGG 325

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           V T GLLGLF+GP +MA + ++W+E     +E
Sbjct: 326 VETFGLLGLFVGPAVMAALILLWREFTEGSEE 357


>gi|54293714|ref|YP_126129.1| hypothetical protein lpl0767 [Legionella pneumophila str. Lens]
 gi|53753546|emb|CAH15001.1| hypothetical protein lpl0767 [Legionella pneumophila str. Lens]
          Length = 350

 Score =  153 bits (386), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 107/332 (32%), Positives = 175/332 (52%), Gaps = 13/332 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYS---SFISKKEESSTFLAVIATVSVMCLFI 75
           I++ SLY +  F   ++ A II   ++P+Y+        K  +S FL    T  +  LF+
Sbjct: 17  IVIFSLYIVHKFIPSMIWAAIIVIATYPLYTRWRKLFGNKHNTSAFLF---TTLMGLLFL 73

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLK 134
           +PL +L    + E +  ++ +   N+ G   P +  +IP  G    + W  ++  P S+K
Sbjct: 74  IPLSWLIGILIKESQLFINFLQHINKEGGAAPEFFKNIPLVGDDLIQYWDVNIGKPGSIK 133

Query: 135 ILSETFLKTNGIDFIPR--FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                FL    +   P   +  + G+        + F ++ LFFFYRDG  +  Q+  +G
Sbjct: 134 ----EFLSNLHVTLTPTSYYIKQIGVNLAHRSFQVGFTLLTLFFFYRDGDKLLLQIQHIG 189

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           E+     W + S  +P  +R T  G  ++ IG G+++G  Y L G P+    G ITA+ A
Sbjct: 190 EYCLGDRWFRYSDKLPSALRGTVNGTIVVGIGVGILMGICYALVGFPAPTLTGFITALAA 249

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           MIP   PI F  V++ LL  G++     + +WG + +F+ D  ++P L+GG I+LPFL  
Sbjct: 250 MIPFVVPIVFIIVALILLSVGSLIGGIIVLVWGTLVMFVADHFVKPVLIGGAIQLPFLAV 309

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            FG++GGV T+GLLGLF+GP++M L   +W+E
Sbjct: 310 LFGILGGVETLGLLGLFLGPMVMVLFVTLWQE 341


>gi|148360616|ref|YP_001251823.1| transmembrane permease [Legionella pneumophila str. Corby]
 gi|148282389|gb|ABQ56477.1| transmembrane permease [Legionella pneumophila str. Corby]
 gi|307609525|emb|CBW99023.1| hypothetical protein LPW_08081 [Legionella pneumophila 130b]
          Length = 350

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 107/332 (32%), Positives = 175/332 (52%), Gaps = 13/332 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYS---SFISKKEESSTFLAVIATVSVMCLFI 75
           I++ SLY +  F   ++ A II   ++P+Y+        K  +S FL    T  +  LF+
Sbjct: 17  IVIFSLYIVHKFIPSMIWAAIIVIATYPLYTRWRKLFGNKHNTSAFLF---TTLMGLLFL 73

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLK 134
           +PL +L    + E +  ++ +   N+ G   P +  +IP  G    + W  ++  P S+K
Sbjct: 74  IPLSWLIGILIKESQLFINFLQHINKEGGAAPEFFKNIPLVGDDLIQYWDVNIGKPGSIK 133

Query: 135 ILSETFLKTNGIDFIPR--FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                FL    +   P   +  + G+        + F ++ LFFFYRDG  +  Q+  +G
Sbjct: 134 ----EFLSNLHVTLTPTSYYIKQIGVNLAHRSFQVGFTLLTLFFFYRDGDKLLLQIQHIG 189

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           E+     W + S  +P  +R T  G  ++ IG G+++G  Y L G P+    G ITA+ A
Sbjct: 190 EYCLGDRWFRYSDRLPSALRGTVNGTIVVGIGVGILMGICYALVGFPAPTLTGFITALAA 249

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           MIP   PI F  V++ LL  G++     + +WG + +F+ D  ++P L+GG I+LPFL  
Sbjct: 250 MIPFVVPIVFIIVALILLSVGSLIGGIIVLVWGTLVMFVADHFVKPVLIGGAIQLPFLAV 309

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            FG++GGV T+GLLGLF+GP++M L   +W+E
Sbjct: 310 LFGILGGVETLGLLGLFLGPMVMVLFVTLWQE 341


>gi|170696533|ref|ZP_02887657.1| protein of unknown function UPF0118 [Burkholderia graminis C4D1M]
 gi|170138580|gb|EDT06784.1| protein of unknown function UPF0118 [Burkholderia graminis C4D1M]
          Length = 372

 Score =  152 bits (385), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 184/355 (51%), Gaps = 21/355 (5%)

Query: 3   ETMLNPQGIMRW------MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK- 55
           +++L P+ + +       + + ++L++L+ ++ F   V  A ++    WP+       + 
Sbjct: 23  QSLLTPERVKKQRAASLALYIGLVLLALWVVRDFLPVVGWAAVLAIALWPLLRKVEGSRW 82

Query: 56  -EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
               +T +A + T+++  L ++P+       + E  +L      A ++GI +P ++  +P
Sbjct: 83  LTGRTTLIAAVLTLAIALLVVLPVGVGIAQALREAHDLTDWFKAAQENGIAMPDFIHRLP 142

Query: 115 GGMWASELW-----TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
            G   +E W     T  L    ++K L  T + T G          FG   +       F
Sbjct: 143 FGAHQAEAWWQAYLTPPLRDSAAMKGLHSTTVVTLG--------RHFGARAVHAVTVFAF 194

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
           M++ LF  ++ G  +S  L    +  F     ++ + +   +R T  G+ ++ +GEG +L
Sbjct: 195 MLVTLFVIFQAGPRLSGALARGLQRGFGEDGAQLVQRMATAVRGTVSGLVVVGLGEGALL 254

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
           G AY++ G+P    L +ITAI AM+P  API+F+  +++L  +G++ +A  L ++G+I +
Sbjct: 255 GVAYFVTGLPHVALLALITAIAAMLPFCAPITFSLAALWLFSQGSVASAIGLLVFGSIVV 314

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           F+ +  +RP L+G   +LPFL   FG++GG  T GLLGLFIGP LM ++ V+W +
Sbjct: 315 FVAEHFVRPVLIGSSTRLPFLLVLFGILGGAETFGLLGLFIGPALMTVLMVLWTD 369


>gi|240141401|ref|YP_002965881.1| hypothetical protein MexAM1_META1p5000 [Methylobacterium extorquens
           AM1]
 gi|240011378|gb|ACS42604.1| Conserved hypothetical protein, putative inner membrane protein,
           putative permease [Methylobacterium extorquens AM1]
          Length = 359

 Score =  152 bits (385), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 102/325 (31%), Positives = 168/325 (51%), Gaps = 7/325 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISK--KEESSTFLAVIATVSVMCLFIVPLLF 80
            LY L GF   ++ A+++    WP++     +      +     + T  V  + ++P+  
Sbjct: 30  GLYILSGFLRALVWAVVLAIALWPLFVRAHRRFPPGRHNILWPAVFTGLVALVLLLPIAV 89

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA-SELWTKHLSHPQSLKILSET 139
           L      E  +L++    A ++GIPVP +++ +P G  A ++ W  HL+H      LSE 
Sbjct: 90  LAVEAGREAHDLLAYAREAERNGIPVPDFVARLPYGAAAVTDWWNAHLAHAGLAHELSER 149

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
              T+  D         G   +   +   F ++ALFF +R+G ++  Q       LF   
Sbjct: 150 LNTTSNRDLT----RSLGAGLVHRAVLFGFCLLALFFLFREGDTVIAQSLRASHRLFGPR 205

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            ++++R +   +  T  G+ ++ IGEG +LG  Y  AGVP  V  G +TA+ AMIP GAP
Sbjct: 206 GERVARQMVASVHGTVDGLVLVGIGEGFLLGIVYAFAGVPHPVLFGALTAVAAMIPFGAP 265

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           ++F   ++ LL  G +  A  +   G +  F+ D  +RP L+GG  +LPFL    G++GG
Sbjct: 266 LAFGLAAVLLLAGGAVVPAAIVVAAGFVVTFVADHFVRPALIGGTTRLPFLWVLLGILGG 325

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKE 344
           V T GLLGLF+GP +MA + ++W+E
Sbjct: 326 VETFGLLGLFVGPAVMAALILLWRE 350


>gi|262377359|ref|ZP_06070583.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
 gi|262307812|gb|EEY88951.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
          Length = 376

 Score =  152 bits (384), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 187/353 (52%), Gaps = 20/353 (5%)

Query: 1   MRETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M++     Q ++ + + FI I +S + LK F  PV+ A II + +WP+Y S +       
Sbjct: 1   MQQYAPTLQKVLLFGLFFILIFLSFHILKYFIIPVVWAAIIAYMTWPLYQSVLRLCGNRP 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL---VSKVVLANQHGIPVPRWLSDIP-G 115
           T  A +  ++V+ +F +P +F  +    E + L   + + V +    + VP ++  +P  
Sbjct: 61  TLSATVMILAVILVFGLPFIFAIFMLQHEGRNLYFELQRQVFSGH--LNVPDFIRGLPIV 118

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC----LSIIFMI 171
           G   +    +  + PQS+ +   T+++ +           +G + L+        + F +
Sbjct: 119 GKEITRTLNEINTDPQSIALSVSTWIQGH---------LNYGKVVLNEVSKNIFKLCFAV 169

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
           ++LFFFYRDG +I  Q+    E +           +    R+   G+ + AI + L+ G 
Sbjct: 170 LSLFFFYRDGQTILNQVRKAFEMVVGPRVHHYFSTISATTRAVVYGVGLTAIAQSLLAGL 229

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
           +Y++AGVP+ + L ++T I A+IP G P++++AV+++L  +G    A  + +WG   +  
Sbjct: 230 SYFVAGVPNPMVLTIVTFIFALIPFGPPLAYSAVALWLFSQGQTIEAIGVMVWGVCIVST 289

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            D  +RP ++ G  ++PFL   FG++GG+ + GL+G+FIGPV++A++  IW+E
Sbjct: 290 ADNVIRPLVISGATQIPFLLIMFGVLGGIASFGLVGVFIGPVILAVLLAIWRE 342


>gi|217968723|ref|YP_002353957.1| hypothetical protein Tmz1t_0268 [Thauera sp. MZ1T]
 gi|217506050|gb|ACK53061.1| protein of unknown function UPF0118 [Thauera sp. MZ1T]
          Length = 363

 Score =  152 bits (384), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 103/350 (29%), Positives = 176/350 (50%), Gaps = 33/350 (9%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           S   L  F  PV  A+II F +WP+Y    ++     T  A++ T+ +   FI+P L++ 
Sbjct: 26  SYAVLHVFIVPVAWAIIIAFATWPLYRKLRARLRRYPTVSALLMTLLLSAAFILPALWMG 85

Query: 83  YYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPG-GMWASELWTKHLSHPQSLKILSETF 140
                E+   ++ V    + G + +P ++  +P  G W   L       P + +     +
Sbjct: 86  ALLRTEVGVAIATVTAQIKAGSLALPDFIRSMPWVGDWLQSLLDSLTGDPDAFRAQLTEW 145

Query: 141 LKTNG------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS---- 190
           ++         I  + R A++ G           F +I +FF YRDG  +  Q+      
Sbjct: 146 VRQGSDQAVALIGDVGRNAAKLG-----------FALITVFFLYRDGDRVLAQVQVVLHR 194

Query: 191 -LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            LGE +  AY   +  +   V+     G+   A+G+GLV G  YW AG+P+ V LG +TA
Sbjct: 195 FLGERV-DAYLAAVGGMTKAVV----WGLIATALGQGLVAGLGYWWAGLPAPVLLGAVTA 249

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++AMIP G P ++ ++ ++LL+ G+      L LWG + +  VD  +RP ++    ++PF
Sbjct: 250 LIAMIPFGTPFAWGSLGVWLLVSGDTAAGIGLLLWGTLVVSWVDNLIRPLVISNATQIPF 309

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           L   FG++GG+   GL+GLF+GPV++A++  +W+E I    E  + +S N
Sbjct: 310 LLVMFGVLGGLAAFGLVGLFLGPVVLAVLMAVWREWI----EESDLVSLN 355


>gi|78062585|ref|YP_372493.1| hypothetical protein Bcep18194_B1735 [Burkholderia sp. 383]
 gi|77970470|gb|ABB11849.1| protein of unknown function UPF0118 [Burkholderia sp. 383]
          Length = 356

 Score =  152 bits (383), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 168/332 (50%), Gaps = 9/332 (2%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK--EESSTFLAVIATVSVMCLFIV 76
           +++++L+ ++ F   +  A +I    WP+   F S +      T +AV+ T ++  L ++
Sbjct: 29  LLVIALWVIRDFIPAIAWACVIAIAMWPMLKRFESHRLFRNRPTLIAVVITAAISLLVVL 88

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKI 135
           P+       + +  +L   +     +GIPVP  +  +P G    +E W  +L HP     
Sbjct: 89  PVAVAATQAIGQAHDLREWLRTVQDNGIPVPDVIGRLPYGAAQITEWWQANLGHPLHA-- 146

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +      N   F+  F  +FG       L   FM++ LF   R G  +S  L       
Sbjct: 147 -ASAMHGVNSEKFLA-FGRQFGTKLAHALLEFGFMLVTLFVILRAGHKLSGALLQGARRA 204

Query: 196 FPAYWKK-ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           F     + I R+V  V   T  G+ ++ +GEG +LG AY LAGVP    LG++TAI AM+
Sbjct: 205 FGRSGAELIERMVAAVF-GTVTGLVVVGLGEGALLGIAYALAGVPHAALLGLVTAIAAML 263

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P  AP+ F   +++L ++G    A  + + G + +F+ +  +RP L+G   +LPFL   F
Sbjct: 264 PFCAPVVFCGAALWLFVQGATMWAIVVAVLGFVVVFVAEHFVRPVLIGSSARLPFLLVLF 323

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           G++GG  T GL+GLF+GP LM ++ ++W E I
Sbjct: 324 GILGGAETFGLIGLFVGPALMTVLTMLWAEWI 355


>gi|170751399|ref|YP_001757659.1| hypothetical protein Mrad2831_5018 [Methylobacterium radiotolerans
           JCM 2831]
 gi|170657921|gb|ACB26976.1| protein of unknown function UPF0118 [Methylobacterium radiotolerans
           JCM 2831]
          Length = 372

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 109/348 (31%), Positives = 174/348 (50%), Gaps = 24/348 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLS-ALIIGFTSWPIYSSFISK--KEESSTFLAVI 65
           QG  R +++  +     ++   F P L+ A+++    WPIY     +    + +  L  +
Sbjct: 28  QGAARVLLVLALTALGLWILHEFLPALAWAVVLAIALWPIYQRLEHRFPPGKHNILLPTL 87

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWT 124
            T +V  +F+ PL  L      E  ++   V  A  +GIP P +L  +P G   A+  W 
Sbjct: 88  MTAAVALVFLAPLAILGIQAAREAHDVAEFVRNAEANGIPAPEFLQHLPYGAAQATAWWN 147

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRF-------ASR-FGMIFLDYCLSIIFMIIALFF 176
            +L H Q+            G D + RF       ASR  G   +   +   F ++ALFF
Sbjct: 148 DNLGHAQA------------GSDLLRRFENHSVLGASRNVGREVVHRIVLFGFSLVALFF 195

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
            +RD  ++  Q  +    LF    ++++R +   +  T  G+ ++ +GEG VLG  Y  A
Sbjct: 196 LFRDWRTVRDQSLTACHRLFGPRGERVARQMVASVHGTVDGLVLVGLGEGFVLGIVYHFA 255

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           GVP  V LG  TA+ AMIP GA ++    ++ L+  G++  A  +   G +  F+ D  +
Sbjct: 256 GVPHPVLLGAFTAVAAMIPFGAAVAIAVAALLLVAAGSVTAALVVAAAGLVVTFVADHFI 315

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           RP L+GG  KLPFL    G++GGV T GLLGLF+GP +MA + ++W+E
Sbjct: 316 RPALIGGTTKLPFLWVLLGILGGVETFGLLGLFVGPAVMAALVLLWRE 363


>gi|114327071|ref|YP_744228.1| hypothetical protein GbCGDNIH1_0407 [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315245|gb|ABI61305.1| hypothetical membrane spanning protein [Granulibacter bethesdensis
           CGDNIH1]
          Length = 391

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 104/349 (29%), Positives = 172/349 (49%), Gaps = 6/349 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLS-ALIIGFTSWPIYSSFISK-KEESSTFLAVIA 66
           Q I   ++  II     +  G F P L+ A +    +WP+Y    +         L ++ 
Sbjct: 39  QKIAFCVLALIITAGALWTLGSFMPALAWAAVFAIATWPLYRRARNAWPGGGRVLLPLLF 98

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           TV+V  LF+ PL         + + ++  V     +G+PVP  LS +P G    E W  +
Sbjct: 99  TVAVTLLFLGPLTLAGIEVANDARGVIDGVEHVLHNGLPVPSALSSLPFGSPVVEWWQDN 158

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           L   +    L+    ++     +   +     +     +   FM++ LFF YRDG +++ 
Sbjct: 159 LGSGEGAARLARHIDRSQ----LVAISRHLSAVLAHRVVLFSFMLVTLFFLYRDGDTLTA 214

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           QL       F  +  ++ R V   I  T  G+ ++ + EG+++G  Y +AGVP     G 
Sbjct: 215 QLSRASARAFGPHGARVGRQVIASIHGTVDGLVLVGLAEGILIGIGYAIAGVPHPTLFGA 274

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +TAI AMIP GAP +F   ++ L   G + +A  +  +G + +FI D  +RPFL+GG  +
Sbjct: 275 VTAIAAMIPFGAPAAFLLAALLLAANGALLSAAIIAGYGCLIVFIADHFVRPFLIGGATR 334

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           LPF+    G++GGV   GL GLF+GP LMA +  +W+E   A  +N+++
Sbjct: 335 LPFILVLLGILGGVECWGLFGLFLGPALMAAVTHLWREFSAAGPDNRDR 383


>gi|172063209|ref|YP_001810860.1| hypothetical protein BamMC406_4180 [Burkholderia ambifaria MC40-6]
 gi|171995726|gb|ACB66644.1| protein of unknown function UPF0118 [Burkholderia ambifaria MC40-6]
          Length = 356

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 101/324 (31%), Positives = 162/324 (50%), Gaps = 9/324 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKK--EESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+   F S++      T +A + TV V  L I+P+    
Sbjct: 35  WVIRDFLPAIAWACVIAIALWPLLKRFESERWFRNRPTLIATVITVGVSLLVILPVALAL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFL 141
              + +  +L   +     +GIP+P  ++ +P G    +E W  +L HP           
Sbjct: 95  GQAISQEHDLRMWLQSVQDNGIPLPDVIARLPYGAAQVTEWWQANLGHPLHA---GAAMH 151

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF-PAYW 200
             +G  FI  F  +FG           FM++ LF   R G  +S  L       F P   
Sbjct: 152 GASGEKFIA-FGRQFGTKVAHALFEFGFMLVTLFVILRAGHKLSGALLHGARRAFGPGGG 210

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           + I R+V  V   T  G+ ++ +GEG +LG AY LAGVP    LG++TA+ AM+P  API
Sbjct: 211 ELIERMVAAVY-GTVTGLVVVGLGEGAILGVAYALAGVPHAALLGLVTAVAAMLPFCAPI 269

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            F   +++L ++G    A  + + G + +F+ +  +RP L+G   +LPFL   FG++GG 
Sbjct: 270 VFCGAALWLFVQGATVWAVVVLVVGFVVVFVAEHFVRPVLIGSSTRLPFLLVLFGILGGA 329

Query: 321 RTMGLLGLFIGPVLMALIAVIWKE 344
            T GL+GLF+GP LM ++ ++W E
Sbjct: 330 ETFGLIGLFVGPALMTVLTMLWAE 353


>gi|296159881|ref|ZP_06842702.1| protein of unknown function UPF0118 [Burkholderia sp. Ch1-1]
 gi|295889864|gb|EFG69661.1| protein of unknown function UPF0118 [Burkholderia sp. Ch1-1]
          Length = 360

 Score =  149 bits (375), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 171/329 (51%), Gaps = 7/329 (2%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK--EESSTFLAVIATVSVMCLFIV 76
           ++L++L+ ++ F A V  A +I    WP+       +     +T +A + T+ +  L ++
Sbjct: 33  LVLLALWVVRDFIAVVAWAGVIAIALWPLLRKVEGNRWFTGRTTLIAAVLTLLIALLVVL 92

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA-SELWTKHLSHPQSLKI 135
           P+       + E  +L      A ++GIP+P ++  +P G+   S  W  +L+ P    +
Sbjct: 93  PVGIGIAQALREAHDLNEWFKTAQENGIPLPDFIQRLPFGVQQISAWWQANLTQP----L 148

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                +K      +      FG   +       FM++ LF  ++ G  +S  L       
Sbjct: 149 RESAAMKGLHSPAVVTLGRHFGARAVHAVTVFAFMLVTLFVIFQAGPRLSGALLKGMRRG 208

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F     ++ + +   +R T  G+ ++ +GEG +LG AY++ G+P    L  +TAI AM+P
Sbjct: 209 FGDDGAQLLQRMAAAVRGTVSGLVVVGLGEGALLGVAYFVTGLPHVALLAFVTAIAAMLP 268

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
             AP++F   +++LL++G++  A  L ++G++ +FI +  +RP L+G   +LPFL   FG
Sbjct: 269 FCAPLTFGIAALWLLLQGSVAAAIGLAVFGSVVVFIAEHFVRPVLIGNSTRLPFLLVLFG 328

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           ++GG  T GLLG+FIGP LM ++ V+W +
Sbjct: 329 ILGGAETFGLLGIFIGPALMTVLMVLWTD 357


>gi|115358452|ref|YP_775590.1| hypothetical protein Bamb_3702 [Burkholderia ambifaria AMMD]
 gi|115283740|gb|ABI89256.1| protein of unknown function UPF0118 [Burkholderia ambifaria AMMD]
          Length = 356

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/324 (30%), Positives = 161/324 (49%), Gaps = 9/324 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKK--EESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+     S++      T +A + TV V  L I+P+    
Sbjct: 35  WVIRDFLPAIAWACVIAIALWPLLKRLESERWFRNRPTLIATVITVGVSLLVILPVALAL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFL 141
              + +  +L   +     +GIP+P  ++ +P G    +E W  +L HP           
Sbjct: 95  GQAIAQEHDLRMWLQSVQDNGIPLPDVIARLPYGAAQVTEWWQANLGHPLHA---GAAMH 151

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF-PAYW 200
             +G  FI  F  +FG           FM++ LF   R G  +S  L       F P   
Sbjct: 152 GASGEKFIA-FGRQFGTKLAHALFEFGFMLVTLFVILRAGHKLSGALLHGARRAFGPGGG 210

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           + I R+V  V   T  G+ ++ +GEG +LG AY LAGVP    LG++TA+ AM+P  API
Sbjct: 211 ELIERMVAAVY-GTVTGLVVVGLGEGAILGVAYALAGVPHAALLGLVTAVAAMLPFCAPI 269

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            F   +++L ++G    A  + + G + +F+ +  +RP L+G   +LPFL   FG++GG 
Sbjct: 270 VFCGAALWLFVQGATVWAVVVLVVGFVVVFVAEHFVRPVLIGSSTRLPFLLVLFGILGGA 329

Query: 321 RTMGLLGLFIGPVLMALIAVIWKE 344
            T GL+GLF+GP LM ++ ++W E
Sbjct: 330 ETFGLIGLFVGPALMTVLTMLWAE 353


>gi|170702831|ref|ZP_02893681.1| protein of unknown function UPF0118 [Burkholderia ambifaria
           IOP40-10]
 gi|170132267|gb|EDT00745.1| protein of unknown function UPF0118 [Burkholderia ambifaria
           IOP40-10]
          Length = 356

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/324 (30%), Positives = 161/324 (49%), Gaps = 9/324 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKK--EESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+   F S++      T +A + T  V  L I+P+    
Sbjct: 35  WVIRDFIPAIAWACVIAIALWPLLKRFESERWFRNRPTLIATVITAGVSLLVILPVALAL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFL 141
              + +  +L   +     +GIP+P  ++ +P G    +E W  +L HP           
Sbjct: 95  GQAISQEHDLRMWLQSIQDNGIPLPDVIARLPYGATQVTEWWQANLGHPLHA---GAAMH 151

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF-PAYW 200
             +G  FI  F  +FG           FM++ LF   R G  +S  L       F P   
Sbjct: 152 GASGEKFIA-FGRQFGTKLAHALFEFGFMLVTLFVILRAGHKLSGALLHGARRAFGPGGG 210

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           + I R+V  V   T  G+ ++ +GEG +LG AY LAGVP    LG++TA+ AM+P  API
Sbjct: 211 ELIERMVAAVY-GTVTGLVVVGLGEGAILGVAYALAGVPHAALLGLVTAVAAMLPFCAPI 269

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            F   +++L ++G    A  + + G + +F+ +  +RP L+G   +LPFL   FG++GG 
Sbjct: 270 VFCGAALWLFVQGATVWAVVVLVVGFVVVFVAEHFVRPVLIGSSTRLPFLLVLFGILGGA 329

Query: 321 RTMGLLGLFIGPVLMALIAVIWKE 344
            T GL+GLF+GP LM ++ ++W E
Sbjct: 330 ETFGLIGLFVGPALMTVLTMLWAE 353


>gi|262370626|ref|ZP_06063951.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262314426|gb|EEY95468.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 373

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 178/339 (52%), Gaps = 8/339 (2%)

Query: 9   QGIMRWMIMFIIL-VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           Q ++ + ++FI+  +S   LK F  PVL A II + +WP+Y S         T  A I  
Sbjct: 9   QKVLLFGLIFILFYLSFQVLKYFIVPVLWAAIIAYITWPLYHSVQKLCGPRPTLSATIMI 68

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIP-GGMWASELWTK 125
             V+ +  +PL F  +    E + L  ++      G + VP+++ D+P  G   +    +
Sbjct: 69  SMVVLVVGIPLTFAIFMLQHEGRNLFYELQRQVFSGHLDVPQFIRDLPIIGKEVTRTLKE 128

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             + P S+      + +++ +++     S         C    F +++LFFFYRDG +I 
Sbjct: 129 INTDPNSIVQNVSGWFQSH-LNYGRLVLSEISKNIFKLC----FAVMSLFFFYRDGQTIL 183

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            Q+    E +           + +  R+   G+ + AI + L+ G +Y++AGVP+ + L 
Sbjct: 184 NQVSKALEMVIGPRIHHYLDTISETTRAVVYGVGLTAIAQALLAGLSYFVAGVPNPMVLT 243

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++T I A+IP G P++++AVS++L  +G    A  + +WG   +   D  +RP ++ G  
Sbjct: 244 IVTFIFALIPFGPPVAYSAVSLWLFSQGQTIEAIGVMVWGVCVVSTADNVIRPLVISGAT 303

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           ++PFL   FG++GG+ + G++GLF+GPV++A++  IW+E
Sbjct: 304 QIPFLLIMFGVLGGLASFGMVGLFVGPVILAVLLAIWRE 342


>gi|323529942|ref|YP_004232094.1| hypothetical protein BC1001_5660 [Burkholderia sp. CCGE1001]
 gi|323386944|gb|ADX59034.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1001]
          Length = 372

 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 182/355 (51%), Gaps = 21/355 (5%)

Query: 3   ETMLNPQGIMRW------MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK- 55
           +++L P+ + +       + + ++L++L+ ++ F   V  A ++    WP+       + 
Sbjct: 23  QSLLTPERVKKQKAASLALYIGLVLLALWVVRDFLPVVGWAGVLAIALWPLLRRVEGSRW 82

Query: 56  -EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
               +T +AV+ T+++  L ++P+       + E  +L      A + GI +P ++  +P
Sbjct: 83  LSGRTTLIAVVLTLAIALLVVLPVGIGIAQALREAHDLSDWFKAAQETGIAMPDFIHRLP 142

Query: 115 -GGMWASELWTKHLSHP----QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
            G   A   W  +L+ P     ++K L  T + T G          FG   +       F
Sbjct: 143 FGAREAEAWWQAYLAAPLRDSAAMKGLHSTTVVTLG--------RHFGARAVHAVTVFAF 194

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
           M++ LF  ++ G  +S  L    +  F     ++   +   +R T  G+ ++ +GEG +L
Sbjct: 195 MLVTLFVIFQAGPRLSGALARGLQRGFGEDGAQLVERMAIAVRGTVSGLVVVGLGEGALL 254

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
           G AY++ G+P    L +ITAI AM+P  API+F   +++L  +G++  A  L ++G++ +
Sbjct: 255 GVAYFVTGLPHVALLALITAIAAMLPFCAPITFGLAALWLFSQGSVAGAIGLLVFGSVVV 314

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           F+ +  +RP L+G   +LPFL   FG++GG  T GLLGLFIGP LM ++ V+W +
Sbjct: 315 FVAEHFVRPVLIGSSTRLPFLLVLFGILGGAETFGLLGLFIGPALMTVLMVLWTD 369


>gi|187919648|ref|YP_001888679.1| hypothetical protein Bphyt_4945 [Burkholderia phytofirmans PsJN]
 gi|187718086|gb|ACD19309.1| protein of unknown function UPF0118 [Burkholderia phytofirmans
           PsJN]
          Length = 360

 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 178/334 (53%), Gaps = 17/334 (5%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK--EESSTFLAVIATVSVMCLFIV 76
           ++L++L+ ++ F A V  A ++    WP+       +     +T +A + T+++  L ++
Sbjct: 33  LVLLALWVVRDFIAVVAWAAVLAIALWPLLRKVEGNRWFTGRTTLIAAVLTLAIALLVVL 92

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHP----Q 131
           P+       + E  ++      A ++GIP+P ++  +P G   AS  W  +L+ P     
Sbjct: 93  PVGVGIAQALREAHDMSDWFKDAQENGIPLPDFIQHLPFGAQQASAWWQANLAQPLRGSA 152

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII-FMIIALFFFYRDGFSISQQLDS 190
           ++K L  T + T G  F  R A         + +++  FM+I LF  ++ G  +S  L  
Sbjct: 153 AMKGLHSTTVMTLGRHFGARAA---------HAVAVFGFMLITLFVIFQAGPRLSSSLLK 203

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                F     ++   +   +R T  G+ ++ +GEG +LG AY++ G+P    L ++TAI
Sbjct: 204 GVRRGFGEDGAQLLLRMATAVRGTVSGLVVVGLGEGALLGVAYFVTGLPHVALLALVTAI 263

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            AM+P  AP++F   +++L+ +G++     L ++G++ +FI +  +RP L+G   +LPFL
Sbjct: 264 AAMLPFCAPLTFGLAALWLVSQGSVAAGVGLAVFGSVVVFIAEHFVRPVLIGNSTRLPFL 323

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              FG++GG  T GLLG+FIGP LM ++ V+W +
Sbjct: 324 LVLFGILGGAETFGLLGIFIGPALMTVLMVLWTD 357


>gi|134293526|ref|YP_001117262.1| hypothetical protein Bcep1808_4840 [Burkholderia vietnamiensis G4]
 gi|134136683|gb|ABO57797.1| protein of unknown function UPF0118 [Burkholderia vietnamiensis G4]
          Length = 379

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 156/323 (48%), Gaps = 7/323 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKK--EESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+   F S +   +  T +A + T  V  L ++P+    
Sbjct: 58  WVIRDFLPAIAWACVIAIALWPLLKRFESNRWFRDRPTLIATVVTAGVSLLVVLPVAIAL 117

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFL 141
              + +  +L   +     +GI +P  +S +P G    ++ W  +L HP    + + T +
Sbjct: 118 GQAIAQAHDLRIWLHSIQDNGIALPDVVSRLPYGSTQIADWWQANLGHP----LHAGTAM 173

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                + +  F  +FG           FM++ LF   R G  +S  L       F     
Sbjct: 174 HGANGEKVIAFGRQFGTKLAHALFEFGFMLVTLFVIMRAGHQLSGALLLGARRAFGRGGA 233

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            +   +   +  T  G+ ++ +GEG +LG AY LAG+P    LG +TA+ AM+P  API 
Sbjct: 234 ALIERMVAAVYGTVTGLVVVGLGEGAILGVAYALAGLPHAALLGFVTAVAAMLPFCAPIV 293

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G    A  +   G + +F+ +  +RP L+G   +LPFL   FG++GG  
Sbjct: 294 FCGAALWLFVQGATAWAIVVLALGIVVVFVAEHFVRPVLIGNSTRLPFLLVLFGILGGAE 353

Query: 322 TMGLLGLFIGPVLMALIAVIWKE 344
           T GL+GLF+GP LM ++ ++W E
Sbjct: 354 TFGLIGLFVGPALMTVLTMLWSE 376


>gi|74318619|ref|YP_316359.1| hypothetical protein Tbd_2601 [Thiobacillus denitrificans ATCC
           25259]
 gi|74058114|gb|AAZ98554.1| membrane protein, putative [Thiobacillus denitrificans ATCC 25259]
          Length = 352

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 178/338 (52%), Gaps = 6/338 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           ++FI  ++ + L  F A +  A I+ + +WP+Y     +     T  A++ T++V+ + +
Sbjct: 19  LVFIFGLTFWVLSPFLAALAWAGILAYATWPLYQRLSRRLAGRDTLCALLMTIAVVTMLL 78

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +P++++      ++    +++ L    G+P +P  +   PGG W +  + +  + P  ++
Sbjct: 79  LPMIWVTSMLAGDVSAASAQLRLVATEGLPPLPPGVRSWPGGDWLAAQYARIQADPAWVR 138

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
              +    T+    +   A   G     + L++     ALFF +R G S+  Q+  +   
Sbjct: 139 AQIDALGLTDA-QRLKAVAGGVGRNVAKFALAVF----ALFFLFRHGASLLSQVRRVATR 193

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 +     V   +R+   G+ + A+ +G +    YW+AGV + V  GVITA++A+I
Sbjct: 194 WLGGAARGYIHAVGVTVRAVVFGIVLTALAQGALAALGYWVAGVAAPVLWGVITALVALI 253

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P   P+ +  +S+ LL +G    A  LFLWGA+ +  VD  +RP ++ GP ++PFL  F 
Sbjct: 254 PFVGPVVWIGLSLSLLAQGESQAALGLFLWGALVVSWVDNLIRPLVISGPTRIPFLLVFL 313

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           G++GG++  GL+GLF+GP L+A+   IW+E ++ ++ +
Sbjct: 314 GVLGGLQAFGLIGLFLGPALLAISVAIWREWLVRVESS 351


>gi|171317803|ref|ZP_02906983.1| protein of unknown function UPF0118 [Burkholderia ambifaria MEX-5]
 gi|171097027|gb|EDT41884.1| protein of unknown function UPF0118 [Burkholderia ambifaria MEX-5]
          Length = 356

 Score =  146 bits (369), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 98/324 (30%), Positives = 161/324 (49%), Gaps = 9/324 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKK--EESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+   F S +      T +A + TV V  L ++P+    
Sbjct: 35  WVIRDFLPAIAWACVIAIALWPLLKRFESDRWFRNRPTLIATVITVGVSLLVVLPVALAL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFL 141
              + +  +L   +     +GIP+P +++ +P G    ++ W  +L HP           
Sbjct: 95  GQAISQEHDLRMWLHSIQDNGIPLPDFIARLPYGAAQITDWWQANLGHPLHA---GTAMH 151

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF-PAYW 200
              G  FI  F  +FG           FM++ LF   R G  +S  +       F P   
Sbjct: 152 GATGEKFIA-FGRQFGTKLAHALFEFGFMLVTLFVILRAGHKLSGAMLHGARRAFGPGGG 210

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           + I R+V  V   T  G+ ++ +GEG +LG AY LAGVP    LG++TA+ AM+P  API
Sbjct: 211 ELIERMVAAVY-GTVTGLVVVGLGEGAILGIAYALAGVPHAALLGLVTAVAAMLPFCAPI 269

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            F   +++L ++G    A  + + G + +F+ +  +RP L+G   +LPFL   FG++GG 
Sbjct: 270 VFCGAALWLFVQGATVWAVVVLVVGFVVVFVAEHFVRPVLIGSSTRLPFLLVLFGILGGA 329

Query: 321 RTMGLLGLFIGPVLMALIAVIWKE 344
            T GL+GLF+GP LM ++ ++W E
Sbjct: 330 ETFGLIGLFVGPALMTVLTMLWAE 353


>gi|149926550|ref|ZP_01914811.1| hypothetical protein LMED105_14163 [Limnobacter sp. MED105]
 gi|149824913|gb|EDM84127.1| hypothetical protein LMED105_14163 [Limnobacter sp. MED105]
          Length = 359

 Score =  145 bits (366), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 110/359 (30%), Positives = 180/359 (50%), Gaps = 7/359 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILV-SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M E +  P+ ++  +   +ILV +   L  F   +L A II    WP++     +     
Sbjct: 1   MAEHLRQPKSLISTLFTVLILVGAAIVLSPFLLAILWAGIIATAFWPLHCRIRGRFPGKP 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP--GGM 117
              A + T+ V  L + P++ L  + + ++ E+ + +  A+  G+ VP WL  IP  G M
Sbjct: 61  NGAAFLTTLVVAFLLVGPMIGLIVFMVQDILEITTFLRQADDSGVAVPDWLPQIPVLGEM 120

Query: 118 WASELWTKHLSHPQSLK-ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
             +  W ++LS P+ +  +L ET   T  +  +   AS   +  L    ++ F +  LFF
Sbjct: 121 LVAS-WQEYLSVPKQISGLLRETL--TQRLGDVQGTASAILLELLGRVATLFFALWVLFF 177

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
           FYRDG SIS +++ +G       WK     +P  +R+   G+ I++  E ++L   +   
Sbjct: 178 FYRDGSSISIRMNRIGTDWLGQRWKPYVSHMPPALRAAVNGLVIVSFAEAVILSVLFAAC 237

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           GV + V LG ITA++A IP  AP     + + L + G+   A  L   G + + I D  +
Sbjct: 238 GVYAPVLLGTITALIAFIPMAAPGLLAILGMILFLSGHGAEAIVLITVGMLVVLIADYLV 297

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           RP L+ G   LPFL   FG+ GGV TMG++GL IGPVL+ L+ V + E+  A   +  +
Sbjct: 298 RPLLIQGGTHLPFLAVLFGVFGGVITMGIVGLIIGPVLLVLLVVFFDEASHAHHHDTPE 356


>gi|167578405|ref|ZP_02371279.1| hypothetical protein BthaT_09713 [Burkholderia thailandensis TXDOH]
 gi|167616545|ref|ZP_02385176.1| hypothetical protein BthaB_09603 [Burkholderia thailandensis Bt4]
          Length = 356

 Score =  145 bits (366), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 91/276 (32%), Positives = 144/276 (52%), Gaps = 15/276 (5%)

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLS---HP 130
           +VP+       + + +EL+  +    Q GIPVP  LS +P G   AS  W  HL+   HP
Sbjct: 87  VVPVAAGLVEAIEQSRELLGWLHRVEQTGIPVPDALSHLPFGSQQASAWWQAHLAQPLHP 146

Query: 131 QSLKILSETFLKTNGID--FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
            S            G+D   +  F   FG   +   +   FM++ LF  +R G  +S  L
Sbjct: 147 AS---------AVKGVDGGSVVTFGRHFGSRLVHAAVLFGFMLVTLFVIFRAGPRLSGAL 197

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +     F      + + +   +  T  G+ ++  GEG++LG AY  AG+P    LG++T
Sbjct: 198 LTGVRRAFGDSGAALLQRMAAAVHGTVTGLVVVGFGEGVLLGLAYAFAGLPHAALLGLVT 257

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           A+ AM+P  AP+ F   +++L ++G +  A  L  +GA+ +F+ +  +RP L+G   +LP
Sbjct: 258 AVAAMLPFCAPLVFCGAALWLFVQGALGWAIGLAAFGAVVVFVAEHFVRPVLIGSSARLP 317

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           FL   FG++GG  T GLLGLF+GP LM ++ V+W E
Sbjct: 318 FLLVLFGILGGAETFGLLGLFVGPALMTVLTVLWAE 353


>gi|255319865|ref|ZP_05361070.1| putative membrane protein [Acinetobacter radioresistens SK82]
 gi|262380394|ref|ZP_06073548.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|255303184|gb|EET82396.1| putative membrane protein [Acinetobacter radioresistens SK82]
 gi|262297840|gb|EEY85755.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 372

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 181/345 (52%), Gaps = 17/345 (4%)

Query: 17  MFIILVSLYF--LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +F ILV L F  LK F  PVL A II + +WP+Y S      + S+  A +  V ++ + 
Sbjct: 16  LFFILVFLGFHVLKYFIVPVLWAAIIAYMTWPLYLSIQRMCGQRSSISASVMIVLIILVI 75

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
            +PL F  +    E + L  ++      G + VP ++ ++P  G   +    +  + PQS
Sbjct: 76  GIPLTFAIFILQHEGRNLYYELQRQIFSGHVSVPDFIRELPIIGKEVTRTLKELNTDPQS 135

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLD----YCLSIIFMIIALFFFYRDGFSISQQL 188
           +      +++ +           +G   L+      + + F I++LFFFYRDG +I +Q+
Sbjct: 136 ITQNVAAWIQGH---------LGYGRFVLNEISKNIIKLCFAIMSLFFFYRDGQTILRQV 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +  E +           + +  R+   G+ + AI + ++ G +Y +AGVP+ + L + T
Sbjct: 187 STAMEKVIGPRIHHYMDTISETTRAVVYGVGLTAIAQAILAGLSYVVAGVPNPMVLTIAT 246

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++A+IP G P+++ +V+++L  +G    A  +F WG   +   D  +RP ++ G  ++P
Sbjct: 247 FLLALIPFGTPVAYGSVALWLFSQGQTVEAIGVFAWGVCIVSTSDNVIRPLVISGATQIP 306

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           FL   FG++GGV + GL+GLFIGPV++A+I  IW+E +    E +
Sbjct: 307 FLLIMFGVLGGVASFGLVGLFIGPVILAVILAIWREWLHETTEPE 351


>gi|217969998|ref|YP_002355232.1| hypothetical protein Tmz1t_1578 [Thauera sp. MZ1T]
 gi|217507325|gb|ACK54336.1| protein of unknown function UPF0118 [Thauera sp. MZ1T]
          Length = 373

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 168/331 (50%), Gaps = 35/331 (10%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F  PV  A+II + +W  Y    S+     T  A++ T+ +   F++P L++      E+
Sbjct: 33  FIVPVAWAVIIAYATWTPYRQLRSRLPRYPTISALLMTLLLSAAFVLPALWIGMLLRTEV 92

Query: 90  KELVSKVVLANQHGIPV-PRWLSDIPGGMWASE----LWTKHLSHPQSLKILSETFLKTN 144
              ++ V    + G  V P ++  +P   W  +    +  +    P++L+     +++  
Sbjct: 93  GVAIAAVTAQIREGAFVLPEFVRTLP---WIGDDLQAMVGELTREPEALRAQLTEWVRQG 149

Query: 145 G------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS-----LGE 193
                  I  + R A++ G           F +I +FF YRDG  + +Q+ +     LGE
Sbjct: 150 SDLALTLIGDVGRNAAKLG-----------FALITVFFLYRDGERVLEQVVAVLRRFLGE 198

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            L P Y   +  +   V+     G+   AIG+G V G  YW AGVP+ V +G ITA++AM
Sbjct: 199 RLDP-YLSAVGGMTKAVV----WGLIATAIGQGFVAGLGYWWAGVPAPVLMGAITAVIAM 253

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP G P ++ ++  +LL+ GN      L LWGA+ +  VD  +RP ++    ++PFL   
Sbjct: 254 IPFGTPFAWGSIGAWLLLTGNTVEGIGLLLWGALVVSWVDNLVRPLVISNATRIPFLLVM 313

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           FG++GG+   GL+GLF+GPV++A++  +W E
Sbjct: 314 FGVLGGLSAFGLVGLFLGPVVLAVLMAVWGE 344


>gi|134278850|ref|ZP_01765563.1| putative membrane protein [Burkholderia pseudomallei 305]
 gi|167905924|ref|ZP_02493129.1| hypothetical protein BpseN_27051 [Burkholderia pseudomallei NCTC
           13177]
 gi|134249269|gb|EBA49350.1| putative membrane protein [Burkholderia pseudomallei 305]
          Length = 356

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 160/323 (49%), Gaps = 7/323 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSF--ISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A ++    WP       +      +T +A + T +V  L +VP+    
Sbjct: 35  WVIRDFMPAIAWACVVAIALWPALRRIDALPALRGRATLVAALLTSAVALLVVVPIAAGL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFL 141
              + +  EL+  +    Q GIP P  LS +P G   AS  W  +L+ P    +   T +
Sbjct: 95  VEAVDQSHELLGWLHRVEQTGIPEPDVLSHLPFGSQQASAWWQANLAKP----LHPATAV 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
           K      +  F   FG       +   FM++ LF  ++ G  +S  L +     F     
Sbjct: 151 KGVDGASVVTFGRHFGSRLAHAAVLFGFMLVTLFVIFQAGPRLSGSLLTGVRRAFGDSGA 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            + + +   +  T  G+ ++  GEG++LG AY LAG+P    LG++TAI AM+P  AP+ 
Sbjct: 211 ALLQRMAAAVYGTVTGLVVVGFGEGVLLGLAYALAGLPHAALLGLVTAIAAMLPFCAPLV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G +  A  L  +G++ +F  +  +RP L+G   +LPFL   FG++GG  
Sbjct: 271 FGGAALWLFVQGALGWAIGLAAFGSVVVFAAEHFVRPVLIGNSARLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKE 344
           T GLLGLF+GP LM ++ V+W E
Sbjct: 331 TFGLLGLFVGPALMTVLTVLWAE 353


>gi|126443267|ref|YP_001062066.1| hypothetical protein BURPS668_A1067 [Burkholderia pseudomallei 668]
 gi|126222758|gb|ABN86263.1| putative membrane protein [Burkholderia pseudomallei 668]
          Length = 356

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 160/323 (49%), Gaps = 7/323 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSF--ISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A ++    WP       +      +T +A + T +V  L +VP+    
Sbjct: 35  WVIRDFMPAIAWACVVAIALWPALRRIDALPALRGRATLVAALLTSAVALLVVVPIAAGL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFL 141
              + +  EL+  +    Q GIP P  LS +P G   AS  W  +L+ P    +   T +
Sbjct: 95  VEAVDQSHELLGWLHRVEQTGIPEPDVLSHLPFGSQQASTWWQANLAKP----LHPATAV 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
           K      +  F   FG       +   FM++ LF  ++ G  +S  L +     F     
Sbjct: 151 KGVDGASVVTFGRHFGSRLAHAAVLFGFMLVTLFVIFQAGPRLSGSLLTGVRRAFGDSGA 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            + + +   +  T  G+ ++  GEG++LG AY  AG+P    LG++TAI AM+P  AP+ 
Sbjct: 211 ALLQRMAAAVYGTVTGLVVVGFGEGVLLGLAYAFAGLPHAALLGLVTAIAAMLPFCAPLV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G +  A  L  +G++ +F+ +  +RP L+G   +LPFL   FG++GG  
Sbjct: 271 FGGAALWLFVQGALGWAIGLAAFGSVVVFVAEHFVRPVLIGNSARLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKE 344
           T GLLGLF+GP LM ++ V+W E
Sbjct: 331 TFGLLGLFVGPALMTVLTVLWAE 353


>gi|237808109|ref|YP_002892549.1| hypothetical protein Tola_1348 [Tolumonas auensis DSM 9187]
 gi|237500370|gb|ACQ92963.1| protein of unknown function UPF0118 [Tolumonas auensis DSM 9187]
          Length = 365

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 168/333 (50%), Gaps = 33/333 (9%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           ++ F  PV  A+II + SWP+Y       +   T  A++ T+ V   FI+P L++     
Sbjct: 30  VQPFIIPVAWAMIIAYASWPLYCLLRQSIKLRPTLSALLMTLLVTTAFILPTLWV----- 84

Query: 87  LEMKELVSKVVLANQH-------GIP-VPRWLSDIPG-GMWASELWTKHLSHPQSLKILS 137
             +  L  +V +A  H       G P +P ++  +P  G W   L T+ +  P + +   
Sbjct: 85  --ISLLRDEVGIAYTHFNSRIAEGPPKLPEYIRTLPWLGSWLDGLITQSIGDPAAFQDKI 142

Query: 138 ETFLKTNGIDFIP------RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            T+L+      +       R A++ G           F +I LFF +RDG  I  Q+  +
Sbjct: 143 STWLQEGSNQLVSVLGDVGRNAAKVG-----------FALITLFFMFRDGEHILTQVHKV 191

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                 A        V ++  +   G+ + A+ +G V G  YW   + + + LG ITA++
Sbjct: 192 LFRFLGARIDNYLAAVGEMTIAVVWGLILTALAQGFVAGLGYWWLDLSAPMLLGAITALV 251

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           +MIP GAP ++ +++++LLI G   N   L LWGA+ +  VD  +RP ++    ++PFL 
Sbjct: 252 SMIPFGAPFAWGSITVFLLIDGQYLNGIILLLWGALAVSSVDNLVRPMVISSATQIPFLL 311

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             FG++GG+   GL+GLF+GPV++A++  IW+E
Sbjct: 312 VMFGVLGGLAAFGLVGLFMGPVILAVLMAIWQE 344


>gi|167819115|ref|ZP_02450795.1| hypothetical protein Bpse9_28538 [Burkholderia pseudomallei 91]
 gi|167827496|ref|ZP_02458967.1| hypothetical protein Bpseu9_27695 [Burkholderia pseudomallei 9]
 gi|226195214|ref|ZP_03790805.1| putative membrane protein [Burkholderia pseudomallei Pakistan 9]
 gi|254189761|ref|ZP_04896270.1| putative membrane protein [Burkholderia pseudomallei Pasteur 52237]
 gi|254300035|ref|ZP_04967481.1| putative membrane protein [Burkholderia pseudomallei 406e]
 gi|157809903|gb|EDO87073.1| putative membrane protein [Burkholderia pseudomallei 406e]
 gi|157937438|gb|EDO93108.1| putative membrane protein [Burkholderia pseudomallei Pasteur 52237]
 gi|225933019|gb|EEH29015.1| putative membrane protein [Burkholderia pseudomallei Pakistan 9]
          Length = 356

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 160/323 (49%), Gaps = 7/323 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSF--ISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A ++    WP       +      +T +A + T +V  L +VP+    
Sbjct: 35  WVIRDFMPAIAWACVVAIALWPALRRIDALPALRGRATLVAALLTSAVALLVVVPIAAGL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFL 141
              + +  EL+  +    Q GIP P  LS +P G   AS  W  +L+ P    +   T +
Sbjct: 95  VEAVDQSHELLGWLHRVEQTGIPEPDVLSHLPFGSQQASAWWQANLAKP----LHPATAV 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
           K      +  F   FG       +   FM++ LF  ++ G  +S  L +     F     
Sbjct: 151 KGVDGASVVTFGRHFGSRLAHAAVLFGFMLVTLFVIFQAGPRLSGSLLTGVRRAFGDSGA 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            + + +   +  T  G+ ++  GEG++LG AY  AG+P    LG++TAI AM+P  AP+ 
Sbjct: 211 ALLQRMAAAVYGTVTGLVVVGFGEGVLLGLAYAFAGLPHAALLGLVTAIAAMLPFCAPLV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G +  A  L  +G++ +F+ +  +RP L+G   +LPFL   FG++GG  
Sbjct: 271 FGGAALWLFVQGALGWAIGLAAFGSVVVFVAEHFVRPVLIGNSARLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKE 344
           T GLLGLF+GP LM ++ V+W E
Sbjct: 331 TFGLLGLFVGPALMTVLTVLWAE 353


>gi|257143048|ref|ZP_05591310.1| hypothetical protein BthaA_28058 [Burkholderia thailandensis E264]
          Length = 356

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/276 (32%), Positives = 144/276 (52%), Gaps = 15/276 (5%)

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLS---HP 130
           +VP+       + + +EL+  +    Q GIP+P  LS +P G   AS  W  HL+   HP
Sbjct: 87  VVPVAAGLVEAIEQSRELLGWLHRVEQTGIPMPDALSHLPFGSQQASAWWQAHLAQPLHP 146

Query: 131 QSLKILSETFLKTNGID--FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
            S            G+D   +  F   FG   +   +   FM++ LF  +R G  +S  L
Sbjct: 147 AS---------AVKGVDGGSVVTFGRHFGSRLVHAAVLFGFMLVTLFVIFRAGPRLSGAL 197

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +     F      + + +   +  T  G+ ++  GEG++LG AY  AG+P    LG++T
Sbjct: 198 LTGVRRAFGDSGAALLQRMAAAVHGTVTGLVVVGFGEGVLLGLAYAFAGLPHAALLGLVT 257

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           A+ AM+P  AP+ F   +++L ++G +  A  L  +GA+ +F+ +  +RP L+G   +LP
Sbjct: 258 AVAAMLPFCAPLVFCGAALWLFVQGALGWAIGLAAFGAVVVFVAEHFVRPVLIGSSARLP 317

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           FL   FG++GG  T GLLGLF+GP LM ++ V+W E
Sbjct: 318 FLLVLFGILGGAETFGLLGLFVGPALMTVLTVLWAE 353


>gi|167839250|ref|ZP_02465977.1| hypothetical protein Bpse38_21639 [Burkholderia thailandensis
           MSMB43]
          Length = 356

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 161/323 (49%), Gaps = 7/323 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSF--ISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A ++    WP       +      +T +A   T +V  L +VP+    
Sbjct: 35  WVIRDFVPAIAWACVVAIALWPALRRIDALPAFHGRATLVAAALTSAVALLVVVPIAAGL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFL 141
              + +  EL+  +  A Q GIP P  LS +P G   AS  W  +L+ P    +   + +
Sbjct: 95  VEAVEQSHELLGWLHRAEQTGIPAPDALSHLPFGSQQASAWWQANLAKP----LHPASAV 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
           K+     +  F   FG       +   FM++ LF  ++ G  +S  L +     F     
Sbjct: 151 KSVDGGSVVTFGRHFGSRLAHAAVLFGFMLVTLFVIFQAGPRLSGALLTGVRRAFGESGA 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            + R +   +  T  G+ ++  GEG++LG AY  AG+P    LG++TA+ AM+P  AP+ 
Sbjct: 211 ALLRRMAAAVYGTVTGLVVVGFGEGVLLGLAYAFAGLPHAALLGLVTAVAAMLPFCAPLV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G +  A  L  +GA+ +F+ +  +RP L+G   +LPFL   FG++GG  
Sbjct: 271 FGGAALWLFVQGALGWAIGLAAFGAVVVFVAEHFVRPVLIGSSARLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKE 344
           T GLLGLF+GP LM ++ V+W E
Sbjct: 331 TFGLLGLFVGPALMTVLTVLWAE 353


>gi|241761186|ref|ZP_04759275.1| protein of unknown function UPF0118 [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241374805|gb|EER64266.1| protein of unknown function UPF0118 [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 352

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 168/333 (50%), Gaps = 14/333 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIY----SSFISKKEESSTFLAVIATVSVMCLF 74
           II + L+ ++ F+  ++ +++I    WP++     S  SK E+       +AT+++    
Sbjct: 17  IIGLGLWTIRHFWPALIWSIVIAIAFWPLWLKLKESMGSKHEK--ILAPALATLAIGVTL 74

Query: 75  IVPLLFLFYYGMLEMKELVSKVV-LANQHGIPVPRWLSDIP--GGMWASELWTKHLSHPQ 131
           I+PLLF  +  M + +  +     L NQ   P P WL  IP  GG   ++          
Sbjct: 75  ILPLLFFAFEIMNDFQAAIHFFQDLKNQDTAP-PDWLGRIPFFGGNLVNKWHQFFAPSSD 133

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
             +I     L  N I+     +  FGM       +  F +++LFF +R G  + +   ++
Sbjct: 134 GSQISLHQLLNGNVINH----SRAFGMNVARRITTFFFTLMSLFFLFRSGSELQKMFLNV 189

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L     ++ +  V   +R T  G+ ++ +GEG++LG  Y   G P  V  G +TAI 
Sbjct: 190 SRRLMGPDMERFAHQVVLSVRGTLDGLVLVGLGEGVLLGIIYVFTGTPHAVMFGGMTAIA 249

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           A+IP  AP+ F  V+  L  +G+I  A  +   G + L I D  +RP L+GG  +LPFL 
Sbjct: 250 AIIPFCAPVMFCIVAAILASQGHIGAAITVVALGMLILMIADHVVRPILIGGATRLPFLW 309

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              G++GG+ T GLLGLF+GP LMA++ +IW++
Sbjct: 310 VLIGILGGIETFGLLGLFLGPALMAVLIMIWRD 342


>gi|260752852|ref|YP_003225745.1| hypothetical protein Za10_0613 [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|283856300|ref|YP_162388.2| hypothetical protein ZMO0653 [Zymomonas mobilis subsp. mobilis ZM4]
 gi|258552215|gb|ACV75161.1| protein of unknown function UPF0118 [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|283775296|gb|AAV89277.2| protein of unknown function UPF0118 [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 352

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 168/333 (50%), Gaps = 14/333 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIY----SSFISKKEESSTFLAVIATVSVMCLF 74
           II + L+ ++ F+  ++ +++I    WP++     S  SK E+       +AT+++    
Sbjct: 17  IIGLGLWTIRHFWPALIWSIVIAIAFWPLWLKLKESMGSKHEK--MLAPALATLAIGVTL 74

Query: 75  IVPLLFLFYYGMLEMKELVSKVV-LANQHGIPVPRWLSDIP--GGMWASELWTKHLSHPQ 131
           I+PLLF  +  M + +  +     L NQ   P P WL  IP  GG   ++          
Sbjct: 75  ILPLLFFAFEIMNDFQAAIHFFQDLKNQDTAP-PDWLGRIPFFGGNLVNKWHQFFAPSSD 133

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
             +I     L  N I+     +  FGM       +  F +++LFF +R G  + +   ++
Sbjct: 134 GSQISLHQLLNGNVINH----SRAFGMNVARRITTFFFTLMSLFFLFRSGSELQKMFLNV 189

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L     ++ +  V   +R T  G+ ++ +GEG++LG  Y   G P  V  G +TAI 
Sbjct: 190 SRRLMGPDMERFAHQVVLSVRGTLDGLVLVGLGEGVLLGIIYVFTGTPHAVMFGGMTAIA 249

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           A+IP  AP+ F  V+  L  +G+I  A  +   G + L I D  +RP L+GG  +LPFL 
Sbjct: 250 AIIPFCAPVMFCIVAAILASQGHIGAAITVVALGMLILMIADHVVRPILIGGATRLPFLW 309

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              G++GG+ T GLLGLF+GP LMA++ +IW++
Sbjct: 310 VLIGILGGIETFGLLGLFLGPALMAVLIMIWRD 342


>gi|83716829|ref|YP_439890.1| hypothetical protein BTH_II1696 [Burkholderia thailandensis E264]
 gi|83650654|gb|ABC34718.1| membrane protein, putative [Burkholderia thailandensis E264]
          Length = 391

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 90/276 (32%), Positives = 144/276 (52%), Gaps = 15/276 (5%)

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLS---HP 130
           +VP+       + + +EL+  +    Q GIP+P  LS +P G   AS  W  HL+   HP
Sbjct: 122 VVPVAAGLVEAIEQSRELLGWLHRVEQTGIPMPDALSHLPFGSQQASAWWQAHLAQPLHP 181

Query: 131 QSLKILSETFLKTNGID--FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
            S            G+D   +  F   FG   +   +   FM++ LF  +R G  +S  L
Sbjct: 182 AS---------AVKGVDGGSVVTFGRHFGSRLVHAAVLFGFMLVTLFVIFRAGPRLSGAL 232

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +     F      + + +   +  T  G+ ++  GEG++LG AY  AG+P    LG++T
Sbjct: 233 LTGVRRAFGDSGAALLQRMAAAVHGTVTGLVVVGFGEGVLLGLAYAFAGLPHAALLGLVT 292

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           A+ AM+P  AP+ F   +++L ++G +  A  L  +GA+ +F+ +  +RP L+G   +LP
Sbjct: 293 AVAAMLPFCAPLVFCGAALWLFVQGALGWAIGLAAFGAVVVFVAEHFVRPVLIGSSARLP 352

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           FL   FG++GG  T GLLGLF+GP LM ++ V+W E
Sbjct: 353 FLLVLFGILGGAETFGLLGLFVGPALMTVLTVLWAE 388


>gi|167722951|ref|ZP_02406187.1| hypothetical protein BpseD_28289 [Burkholderia pseudomallei DM98]
          Length = 356

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 159/323 (49%), Gaps = 7/323 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSF--ISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A ++    WP       +      +T +A + T +V  L +VP+    
Sbjct: 35  WVIRDFMPAIAWACVVAIALWPALRRIDALPALRGRATLVAALLTSAVALLVVVPIAAGL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFL 141
              + +  EL+  +    Q GIP P  LS +P G   AS  W  +L+ P    +   T +
Sbjct: 95  VEAVDQSHELLGWLHRVEQTGIPEPDVLSHLPFGSQQASAWWQANLAKP----LHPATAV 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
           K      +  F   FG       +   FM++ LF  ++ G  +S  L +     F     
Sbjct: 151 KGVDGASVVTFGRHFGSRLAHAAVLFGFMLVTLFVIFQAGPRLSGSLLTGVRRAFGDSGA 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            + + +   +  T  G+ ++  GEG++LG AY  AG+P    LG++TAI AM+P  AP+ 
Sbjct: 211 ALLQRMAAAVYGTVTGLVVVGFGEGVLLGLAYTFAGLPHAALLGLVTAIAAMLPFCAPLV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G +  A  L  +G++ +F  +  +RP L+G   +LPFL   FG++GG  
Sbjct: 271 FGGAALWLFVQGALGWAIGLAAFGSVVVFAAEHFVRPVLIGNSARLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKE 344
           T GLLGLF+GP LM ++ V+W E
Sbjct: 331 TFGLLGLFVGPALMTVLTVLWAE 353


>gi|53721751|ref|YP_110736.1| hypothetical protein BPSS0723 [Burkholderia pseudomallei K96243]
 gi|76817947|ref|YP_337450.1| hypothetical protein BURPS1710b_A2299 [Burkholderia pseudomallei
           1710b]
 gi|126455713|ref|YP_001075020.1| hypothetical protein BURPS1106A_A0984 [Burkholderia pseudomallei
           1106a]
 gi|167741935|ref|ZP_02414709.1| hypothetical protein Bpse14_27958 [Burkholderia pseudomallei 14]
 gi|167848970|ref|ZP_02474478.1| hypothetical protein BpseB_27141 [Burkholderia pseudomallei B7210]
 gi|167914234|ref|ZP_02501325.1| hypothetical protein Bpse112_27347 [Burkholderia pseudomallei 112]
 gi|217418668|ref|ZP_03450175.1| putative membrane protein [Burkholderia pseudomallei 576]
 gi|237509212|ref|ZP_04521927.1| putative membrane protein [Burkholderia pseudomallei MSHR346]
 gi|242312985|ref|ZP_04812002.1| putative membrane protein [Burkholderia pseudomallei 1106b]
 gi|254183096|ref|ZP_04889688.1| putative membrane protein [Burkholderia pseudomallei 1655]
 gi|254192859|ref|ZP_04899294.1| putative membrane protein [Burkholderia pseudomallei S13]
 gi|254262513|ref|ZP_04953378.1| putative membrane protein [Burkholderia pseudomallei 1710a]
 gi|52212165|emb|CAH38183.1| putative membrane protein [Burkholderia pseudomallei K96243]
 gi|76582420|gb|ABA51894.1| putative membrane protein [Burkholderia pseudomallei 1710b]
 gi|126229481|gb|ABN92894.1| putative membrane protein [Burkholderia pseudomallei 1106a]
 gi|169649613|gb|EDS82306.1| putative membrane protein [Burkholderia pseudomallei S13]
 gi|184213629|gb|EDU10672.1| putative membrane protein [Burkholderia pseudomallei 1655]
 gi|217397972|gb|EEC37987.1| putative membrane protein [Burkholderia pseudomallei 576]
 gi|235001417|gb|EEP50841.1| putative membrane protein [Burkholderia pseudomallei MSHR346]
 gi|242136224|gb|EES22627.1| putative membrane protein [Burkholderia pseudomallei 1106b]
 gi|254213515|gb|EET02900.1| putative membrane protein [Burkholderia pseudomallei 1710a]
          Length = 356

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 159/323 (49%), Gaps = 7/323 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSF--ISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A ++    WP       +      +T +A + T +V  L +VP+    
Sbjct: 35  WVIRDFMPAIAWACVVAIALWPALRRIDALPALRGRATLVAALLTSAVALLVVVPIAAGL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFL 141
              + +  EL+  +    Q GIP P  LS +P G   AS  W  +L+ P    +   T +
Sbjct: 95  VEAVDQSHELLGWLHRVEQTGIPEPDVLSHLPFGSQQASAWWQANLAKP----LHPATAV 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
           K      +  F   FG       +   FM++ LF  ++ G  +S  L +     F     
Sbjct: 151 KGVDGASVVTFGRHFGSRLAHAAVLFGFMLVTLFVIFQAGPRLSGSLLTGVRRAFGDSGA 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            + + +   +  T  G+ ++  GEG++LG AY  AG+P    LG++TAI AM+P  AP+ 
Sbjct: 211 ALLQRMAAAVYGTVTGLVVVGFGEGVLLGLAYAFAGLPHAALLGLVTAIAAMLPFCAPLV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G +  A  L  +G++ +F  +  +RP L+G   +LPFL   FG++GG  
Sbjct: 271 FGGAALWLFVQGALGWAIGLAAFGSVVVFAAEHFVRPVLIGNSARLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKE 344
           T GLLGLF+GP LM ++ V+W E
Sbjct: 331 TFGLLGLFVGPALMTVLTVLWAE 353


>gi|167897573|ref|ZP_02484975.1| hypothetical protein Bpse7_27792 [Burkholderia pseudomallei 7894]
 gi|167922146|ref|ZP_02509237.1| hypothetical protein BpseBC_26558 [Burkholderia pseudomallei
           BCC215]
          Length = 356

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 159/323 (49%), Gaps = 7/323 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSF--ISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A ++    WP       +      +T +A + T +V  L +VP+    
Sbjct: 35  WVIRDFMPAIAWACVVAIALWPALRRIDALPALRGRATLVAALLTSAVALLVVVPIAAGL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFL 141
              + +  EL+  +    Q GIP P  LS +P G   AS  W  +L+ P    +   T +
Sbjct: 95  VEAVDQSHELLGWLHRVEQTGIPEPDVLSHLPFGSQQASTWWQANLAKP----LHPATAV 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
           K      +  F   FG       +   FM++ LF  ++ G  +S  L +     F     
Sbjct: 151 KGVDGASVVTFGRHFGSRLAHAAVLFGFMLVTLFVIFQAGPRLSGSLLTGVRRAFGDSGA 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            + + +   +  T  G+ ++  GEG++LG AY  AG+P    LG++TAI AM+P  AP+ 
Sbjct: 211 ALLQRMAAAVYGTVTGLVVVGFGEGVLLGLAYAFAGLPHAALLGLVTAIAAMLPFCAPLV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G +  A  L  +G++ +F  +  +RP L+G   +LPFL   FG++GG  
Sbjct: 271 FGGAALWLFVQGALGWAIGLAAFGSVVVFAAEHFVRPVLIGNSARLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKE 344
           T GLLGLF+GP LM ++ V+W E
Sbjct: 331 TFGLLGLFVGPALMTVLTVLWAE 353


>gi|53716952|ref|YP_106010.1| hypothetical protein BMAA1401 [Burkholderia mallei ATCC 23344]
 gi|67643334|ref|ZP_00442081.1| putative membrane protein [Burkholderia mallei GB8 horse 4]
 gi|121597068|ref|YP_990127.1| hypothetical protein BMASAVP1_0518 [Burkholderia mallei SAVP1]
 gi|124383193|ref|YP_001023956.1| hypothetical protein BMA10229_0130 [Burkholderia mallei NCTC 10229]
 gi|126446549|ref|YP_001078668.1| hypothetical protein BMA10247_A1484 [Burkholderia mallei NCTC
           10247]
 gi|167001472|ref|ZP_02267269.1| putative membrane protein [Burkholderia mallei PRL-20]
 gi|254174598|ref|ZP_04881260.1| putative membrane protein [Burkholderia mallei ATCC 10399]
 gi|254200862|ref|ZP_04907227.1| putative membrane protein [Burkholderia mallei FMH]
 gi|254204829|ref|ZP_04911182.1| putative membrane protein [Burkholderia mallei JHU]
 gi|254356602|ref|ZP_04972877.1| putative membrane protein [Burkholderia mallei 2002721280]
 gi|52422922|gb|AAU46492.1| putative membrane protein [Burkholderia mallei ATCC 23344]
 gi|121224866|gb|ABM48397.1| putative membrane protein [Burkholderia mallei SAVP1]
 gi|124291213|gb|ABN00483.1| putative membrane protein [Burkholderia mallei NCTC 10229]
 gi|126239403|gb|ABO02515.1| putative membrane protein [Burkholderia mallei NCTC 10247]
 gi|147748474|gb|EDK55549.1| putative membrane protein [Burkholderia mallei FMH]
 gi|147754415|gb|EDK61479.1| putative membrane protein [Burkholderia mallei JHU]
 gi|148025629|gb|EDK83752.1| putative membrane protein [Burkholderia mallei 2002721280]
 gi|160695644|gb|EDP85614.1| putative membrane protein [Burkholderia mallei ATCC 10399]
 gi|238524656|gb|EEP88088.1| putative membrane protein [Burkholderia mallei GB8 horse 4]
 gi|243062780|gb|EES44966.1| putative membrane protein [Burkholderia mallei PRL-20]
          Length = 356

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 159/323 (49%), Gaps = 7/323 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSF--ISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A ++    WP       +      +T +A + T +V  L +VP+    
Sbjct: 35  WVIRDFMPAIAWACVVAIALWPALRRIDALPALRGRATLVAAVLTSAVALLVVVPIAAGL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFL 141
              + +  EL+  +    Q GIP P  LS +P G   AS  W  +L+ P    +   T +
Sbjct: 95  VEAVDQSHELLGWLHRVEQTGIPEPDVLSHLPFGSQQASAWWLANLAKP----LHPATAV 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
           K      +  F   FG       +   FM++ LF  ++ G  +S  L +     F     
Sbjct: 151 KGVDGASVVTFGRHFGSRLAHAAVLFGFMLVTLFVIFQAGPRLSGSLLTGVRRAFGDSGA 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            + + +   +  T  G+ ++  GEG++LG AY  AG+P    LG++TAI AM+P  AP+ 
Sbjct: 211 ALLQRMAAAVYGTVTGLVVVGFGEGVLLGLAYAFAGLPHAALLGLVTAIAAMLPFCAPLV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G +  A  L  +G++ +F  +  +RP L+G   +LPFL   FG++GG  
Sbjct: 271 FGGAALWLFVQGALGWAIGLAAFGSVVVFAAEHFVRPVLIGNSARLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKE 344
           T GLLGLF+GP LM ++ V+W E
Sbjct: 331 TFGLLGLFVGPALMTVLTVLWAE 353


>gi|226953805|ref|ZP_03824269.1| protein of hypothetical function UPF0118 [Acinetobacter sp. ATCC
           27244]
 gi|294651707|ref|ZP_06729009.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
 gi|226835444|gb|EEH67827.1| protein of hypothetical function UPF0118 [Acinetobacter sp. ATCC
           27244]
 gi|292822426|gb|EFF81327.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
          Length = 366

 Score =  142 bits (358), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 104/348 (29%), Positives = 185/348 (53%), Gaps = 20/348 (5%)

Query: 17  MFIILVSLYF--LKGFFAPVLSALIIGFTSWPIYSSFISKK---EESSTFLAVIATVSVM 71
           +F +L+ L F  LK F  PVL A II + +WP+Y  ++ ++   E   T  A I    V+
Sbjct: 17  LFFVLMFLGFNILKYFIVPVLWAAIIAYMTWPVY-LWVQRRFFGENRPTLNATIMISLVI 75

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKV--VLANQHGIPVPRWLSDIPG-GMWASELWTKHLS 128
            +  VP +F  +   LE + L   +   L + H I VP ++ ++P  G   S    +   
Sbjct: 76  LVIGVPFIFAIFLLQLEGRNLYMNLQKQLFSGH-IQVPDFIRNLPVIGEDISHTINELSG 134

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL-SIIFMIIALFFFYRDGFSISQQ 187
            P S+      +++++ + +      RF +  +   L  + F ++ LFFFYRDG +I  Q
Sbjct: 135 DPNSITRSIAEWIQSH-LSY-----GRFVLSEISRNLVKLTFALMTLFFFYRDGQTILAQ 188

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +    E +         + + +  R+   G+ + A+ + L+ G +Y++AGVP+ + L ++
Sbjct: 189 VSRALEMVIGPRVHHYLQTISETTRAVVYGIGLTAVAQALLAGLSYFVAGVPNPMLLTIV 248

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           T I+A+IP G P+S+  V ++L  +G    A  +  WG + +   D  +RP ++ G  ++
Sbjct: 249 TFILALIPFGTPVSYLGVGLWLFAQGQTVEAIGVVTWGVLIVSSADNVIRPLVISGATQI 308

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           PFL   FG++GG+ + GL+GLFIGPV++A++  IW+E    + EN E+
Sbjct: 309 PFLLIMFGVLGGIASFGLVGLFIGPVILAVLLAIWRE---WLHENVEQ 353


>gi|52840967|ref|YP_094766.1| transmembrane permease [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|54296757|ref|YP_123126.1| hypothetical protein lpp0796 [Legionella pneumophila str. Paris]
 gi|52628078|gb|AAU26819.1| transmembrane permease [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|53750542|emb|CAH11944.1| hypothetical protein lpp0796 [Legionella pneumophila str. Paris]
          Length = 350

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 105/332 (31%), Positives = 175/332 (52%), Gaps = 13/332 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYS---SFISKKEESSTFLAVIATVSVMCLFI 75
           I++ SLY +  F   ++ A II   ++P+Y+        K  +S FL    T  +  LF+
Sbjct: 17  IVIFSLYIVHKFIPSMIWAAIIVIATYPLYTRWRKLFGNKHNTSAFLF---TTLMGLLFL 73

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLK 134
           +PL +L    + E +  ++ +   N+ G   P +  +IP  G    + W  ++  P ++K
Sbjct: 74  IPLSWLIGILIKESQLFINFLQHINKEGGAAPEFFKNIPLVGDDLIQYWDVNIGKPGNIK 133

Query: 135 ILSETFLKTNGIDFIPR--FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                FL    +   P   +  + G+        + F ++ LFFFYRDG  +  Q+  +G
Sbjct: 134 ----EFLSNLHVTLTPTSYYIKQIGVNLAHRSFQVGFTLLTLFFFYRDGDKLLLQIQHIG 189

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           E+     W + S  +P  +R T  G  ++ IG G+++G  Y L G P+    G ITA+ A
Sbjct: 190 EYCLGDRWFRYSDRLPSALRGTVNGTIVVGIGVGILMGVCYALVGFPAPTLTGFITALAA 249

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           MIP   P+ F  V++ LL  G++     + +WG + +F+ D  ++P L+GG I+LPFL  
Sbjct: 250 MIPFVVPVVFIIVALILLSVGSLIGGIIVLVWGTLVMFVADHFVKPVLIGGAIQLPFLAV 309

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            FG++GGV T+GLLGLF+GP++M L   +W+E
Sbjct: 310 LFGILGGVETLGLLGLFLGPMVMVLFVTLWQE 341


>gi|238025108|ref|YP_002909340.1| hypothetical protein bglu_2g17670 [Burkholderia glumae BGR1]
 gi|237879773|gb|ACR32105.1| Hypothetical protein bglu_2g17670 [Burkholderia glumae BGR1]
          Length = 356

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 177/336 (52%), Gaps = 12/336 (3%)

Query: 16  IMFIILVSL--YFLKGFFAPVLSALIIGFTSWPIYSSFISKK--EESSTFLAVIATVSVM 71
           +++ +LV+L  + ++ F   +  A +I    WP      + +      T +A++ T +V 
Sbjct: 23  VLYTVLVALALWIIRAFLPAIAWAGVIAIALWPALRRIDAIRWLSGRRTLVAILLTSAVG 82

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHP 130
            L + P+         ++ ++ + V  A  +GIP+P  +  +P G    +  W  +L+ P
Sbjct: 83  LLLVAPVAIAVAQAAGQIHDVFAWVHDARANGIPLPDAVYHLPFGSRQVAAWWQANLAQP 142

Query: 131 QSLKILSETFLKT-NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
               + +   +K  NG  F+  +   FG   L   +   FM++ LF  +R G  +S+ L 
Sbjct: 143 ----LHAPAGVKGMNGEAFV-SYGKAFGSHVLHAAVLFGFMLVTLFVIFRAGPRMSESLM 197

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
              +  F A    +++ +   +  T  G+ ++ +GEG +LG AY +AGV     LG++TA
Sbjct: 198 RGVQRAFGANGASLTQRMVSAVYGTVTGLVVVGLGEGALLGVAYAVAGVSHAALLGLVTA 257

Query: 250 IMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           + AM+P  AP+ F   +++L L+KG    A  L ++GA+ +F+ +  +RP L+GG  +LP
Sbjct: 258 VAAMLPFCAPVVFCGAALWLFLVKGAAAWAIGLAVFGAVVVFVAEHFVRPVLIGGSARLP 317

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           FL   FG++GG  T GLLGLFIGP LM ++ V+W E
Sbjct: 318 FLLVLFGILGGAETFGLLGLFIGPALMTVLTVLWSE 353


>gi|50086276|ref|YP_047786.1| hypothetical protein ACIAD3289 [Acinetobacter sp. ADP1]
 gi|49532252|emb|CAG69964.1| conserved hypothetical protein; putative membrane protein
           [Acinetobacter sp. ADP1]
          Length = 370

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 172/320 (53%), Gaps = 8/320 (2%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI-VPLLFLFYYGM 86
           K F  PV+ A II + +WPIY        E+   L+    +S++ L I +PL F  +   
Sbjct: 29  KYFIVPVVWAAIIAYMTWPIYIGIQRFCGENRPNLSATLMISLIILVIGIPLTFAVFMLQ 88

Query: 87  LEMKELVSKVVLANQHG-IPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLKTN 144
            E + L  ++      G +  P ++ ++P  G   + +  +  ++P +L      +++++
Sbjct: 89  HEGRNLFIELQQQIFSGHLSAPDFIRELPLVGNEITRILNEINTNPSNLTQNLSLWIQSH 148

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            + +     S      +  C    F +++LFFFYRDG +I  Q+    E +         
Sbjct: 149 -MGYGRFVLSEISKNLVKLC----FALLSLFFFYRDGHTILNQVSKALEMVIGPRIHHYM 203

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
             + +  R+   G+ + A+ + ++ G +Y++AGVP+ + L ++T ++A+IP G P+++T+
Sbjct: 204 DTISETTRAVVYGVGLTAVAQAILAGLSYFVAGVPNPMVLTIVTFLLALIPFGTPLAYTS 263

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           V+++L  +G +  A  + LWG   +   D  +RP ++ G  ++PFL   FG++GG+ + G
Sbjct: 264 VALWLFSQGQMMGAIGVMLWGVCIVSTSDNVIRPLVISGATQIPFLLIMFGVLGGLASFG 323

Query: 325 LLGLFIGPVLMALIAVIWKE 344
           L+GLFIGPV++A++  IW+E
Sbjct: 324 LVGLFIGPVILAILLAIWRE 343


>gi|296106318|ref|YP_003618018.1| transmembrane permease [Legionella pneumophila 2300/99 Alcoy]
 gi|295648219|gb|ADG24066.1| transmembrane permease [Legionella pneumophila 2300/99 Alcoy]
          Length = 283

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 92/275 (33%), Positives = 149/275 (54%), Gaps = 7/275 (2%)

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQ 131
           LF++PL +L    + E +  ++ +   N+ G   P +  +IP  G    + W  ++  P 
Sbjct: 4   LFLIPLSWLIGILIKESQLFINFLQHINKEGGAAPEFFKNIPLVGDDLIQYWDVNIGKPG 63

Query: 132 SLKILSETFLKTNGIDFIPR--FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
           S+K     FL    +   P   +  + G+        + F ++ LFFFYRDG  +  Q+ 
Sbjct: 64  SIK----EFLSNLHVTLTPTSYYIKQIGVNLAHRSFQVGFTLLTLFFFYRDGDKLLLQIQ 119

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +GE+     W + S  +P  +R T  G  ++ IG G+++G  Y L G P+    G ITA
Sbjct: 120 HIGEYCLGDRWFRYSDRLPSALRGTVNGTIVVGIGVGILMGICYALVGFPAPTLTGFITA 179

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           + AMIP   PI F  V++ LL  G++     + +WG + +F+ D  ++P L+GG I+LPF
Sbjct: 180 LAAMIPFVVPIVFIIVALILLSVGSLIGGIIVLVWGTLVMFVADHFVKPVLIGGAIQLPF 239

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L   FG++GGV T+GLLGLF+GP++M L   +W+E
Sbjct: 240 LAVLFGILGGVETLGLLGLFLGPMVMVLFVTLWQE 274


>gi|193078525|gb|ABO13539.2| putative membrane protein [Acinetobacter baumannii ATCC 17978]
          Length = 372

 Score =  139 bits (350), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 174/339 (51%), Gaps = 22/339 (6%)

Query: 17  MFIILVSLYF--LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +F IL+ L F  LK F  PVL A II + +WPIY        E+   L     +S++ L 
Sbjct: 16  LFFILIFLGFNILKYFIVPVLWAAIIAYMTWPIYLRIQHFFGENRNNLNATVMISLVILI 75

Query: 75  I-VPLLFLFYYGMLEMKEL---VSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSH 129
           + VP     +    E + L   + + V +    + VP ++ ++P  G   S    +  + 
Sbjct: 76  VGVPFTCAIFILQHEGRNLYFDLQRQVFSGH--LSVPDFIRNLPFIGKEISRTLNEINTD 133

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLD----YCLSIIFMIIALFFFYRDGFSIS 185
           P S       +L+++           +G + L+      + + F I++LFFFYRDG +I 
Sbjct: 134 PNSTIQNIAAWLQSH---------LSYGRVLLNEISKNIVKLCFAILSLFFFYRDGHTIL 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            Q+    E +           + +  R+   G+ + AI + ++ G +Y++AGVP+ + L 
Sbjct: 185 TQVSKALEMVIGPRIHHYLDTISETTRAVVYGVGLTAIAQAVLAGLSYFVAGVPNPMVLT 244

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           + T ++A+IP G P+S+  V ++L  +G    A  + LWG + +   D  +RP ++ G  
Sbjct: 245 IATFLLALIPFGTPVSYLGVGLWLFSQGQTMEAIGVILWGVLIVSSSDNVIRPLVISGAT 304

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           ++PFL   FG++GG+ + GL+GLFIGPV++A++  IW+E
Sbjct: 305 QIPFLLIMFGVLGGIASFGLVGLFIGPVILAVLLAIWRE 343


>gi|295699388|ref|YP_003607281.1| hypothetical protein BC1002_3752 [Burkholderia sp. CCGE1002]
 gi|295438601|gb|ADG17770.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1002]
          Length = 364

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 103/333 (30%), Positives = 177/333 (53%), Gaps = 15/333 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK--EESSTFLAVIATVSVMCLFIV 76
           ++L++L+ ++ F   V  A ++    WP+     S       +T LA + T+ +  L ++
Sbjct: 37  LVLLALWVVRDFIVVVAWAAVVAIALWPLLHKVASSPWFRGRTTLLATVFTLVIAVLVLL 96

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA-SELWTKHLSHP----Q 131
           P+       + E  +L      A ++GIP+P +++ +P G+   S  W  +L+ P     
Sbjct: 97  PVGLGLAQALREAHDLNDWFRSAQENGIPLPDFINRLPFGVQQISSWWQANLAQPLRGSA 156

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           ++K L    + T G  F  R A+   M+F        FM++ LF  ++ G  +S  L   
Sbjct: 157 AMKGLHSETVMTLGRHFGAR-AAHAAMVF-------AFMLVTLFVIFQAGPRLSGSLLKA 208

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               F      +   +   +R T  G+ ++ +GEGL+LG AY++ GVP    LG +TAI 
Sbjct: 209 ARRGFGDSGADLVAHMGTAVRGTVSGLIVVGVGEGLLLGVAYFVTGVPHAALLGFVTAIA 268

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           AM+P  API F   +++LL++G++  A  L ++GA+ +F+ +  +RP L+G   +LPFL 
Sbjct: 269 AMLPFCAPIVFGLAALWLLVQGSMVAAAGLLVFGAVVVFVAEHFVRPVLIGNSTRLPFLL 328

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             FG++GG  T GLLG+FIGP LM ++ V+W +
Sbjct: 329 VLFGILGGAETFGLLGIFIGPALMTVLMVLWTD 361


>gi|186472140|ref|YP_001859482.1| hypothetical protein Bphy_3280 [Burkholderia phymatum STM815]
 gi|184194472|gb|ACC72436.1| protein of unknown function UPF0118 [Burkholderia phymatum STM815]
          Length = 361

 Score =  139 bits (349), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 166/332 (50%), Gaps = 8/332 (2%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK--EESSTFLAVIATVSVMCLFIV 76
           +++++L+ ++ F   +  A +I    WP +      K  +  ST +A + T+++  LF++
Sbjct: 32  MVVLALWVIRDFVPAIAWACVIAIALWPAFHRIEEHKFFKGRSTLIATVLTIAIGLLFLL 91

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKI 135
           P+         E  +++       ++GIPVP ++  +P G       W  +LS P    +
Sbjct: 92  PVGIGIAQAASEAHDVIEWARGVQENGIPVPDFVQHLPFGAAQIGSWWQDNLSQP----L 147

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                +K      +  F   FG       +   FM++ LF  ++ G  +S +L       
Sbjct: 148 RDSPAMKGLHGGAVVTFGRHFGARAAHALMLFAFMLVTLFVIFQAGPKLSCELMKGVRRA 207

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F      +   +   +R T  G+ ++ IGEG +L  AY L GVP    LG +TAI AM+P
Sbjct: 208 FGYDGMHLFERMAAAVRGTVSGLVVVGIGEGALLLVAYMLTGVPHAALLGFVTAIAAMLP 267

Query: 256 GGAPISFTAVSIYLLI-KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             AP+ F   ++++ + +G +  A  L ++G + +F+ +  +RP L+G   +LPFL   F
Sbjct: 268 FCAPVVFCGAALWIFVEQGALIPAIGLAVFGFVVVFVAEHFVRPVLIGSSARLPFLLVLF 327

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           G++GG  T GLLGLF+GP LM ++ V+W E I
Sbjct: 328 GILGGAETFGLLGLFVGPALMTVLMVLWTEWI 359


>gi|169632288|ref|YP_001706024.1| hypothetical protein ABSDF0345 [Acinetobacter baumannii SDF]
 gi|169794531|ref|YP_001712324.1| hypothetical protein ABAYE0342 [Acinetobacter baumannii AYE]
 gi|184159661|ref|YP_001848000.1| permease [Acinetobacter baumannii ACICU]
 gi|213158897|ref|YP_002320895.1| hypothetical protein AB57_3597 [Acinetobacter baumannii AB0057]
 gi|215482119|ref|YP_002324301.1| hypothetical protein ABBFA_000368 [Acinetobacter baumannii
           AB307-0294]
 gi|239501916|ref|ZP_04661226.1| hypothetical protein AbauAB_06345 [Acinetobacter baumannii AB900]
 gi|260556965|ref|ZP_05829182.1| permease [Acinetobacter baumannii ATCC 19606]
 gi|294837967|ref|ZP_06782650.1| hypothetical protein A60131_08510 [Acinetobacter sp. 6013113]
 gi|294843277|ref|ZP_06787960.1| hypothetical protein A6014_15504 [Acinetobacter sp. 6014059]
 gi|294858709|ref|ZP_06796478.1| hypothetical protein A6013_08961 [Acinetobacter sp. 6013150]
 gi|301344848|ref|ZP_07225589.1| hypothetical protein AbauAB0_01365 [Acinetobacter baumannii AB056]
 gi|301513299|ref|ZP_07238536.1| hypothetical protein AbauAB05_17001 [Acinetobacter baumannii AB058]
 gi|301597602|ref|ZP_07242610.1| hypothetical protein AbauAB059_17343 [Acinetobacter baumannii
           AB059]
 gi|169147458|emb|CAM85319.1| conserved hypothetical protein; putative membrane protein
           [Acinetobacter baumannii AYE]
 gi|169151080|emb|CAO99739.1| conserved hypothetical protein; putative membrane protein
           [Acinetobacter baumannii]
 gi|183211255|gb|ACC58653.1| predicted permease [Acinetobacter baumannii ACICU]
 gi|213058057|gb|ACJ42959.1| hypothetical protein AB57_3597 [Acinetobacter baumannii AB0057]
 gi|213986092|gb|ACJ56391.1| conserved hypothetical protein [Acinetobacter baumannii AB307-0294]
 gi|260409571|gb|EEX02872.1| permease [Acinetobacter baumannii ATCC 19606]
 gi|322509572|gb|ADX05026.1| permease [Acinetobacter baumannii 1656-2]
 gi|323519592|gb|ADX93973.1| permease [Acinetobacter baumannii TCDC-AB0715]
          Length = 372

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 174/339 (51%), Gaps = 22/339 (6%)

Query: 17  MFIILVSLYF--LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +F IL+ L F  LK F  PVL A II + +WPIY        E+   L     +S++ L 
Sbjct: 16  LFFILIFLGFNILKYFIVPVLWAAIIAYMTWPIYLRIQHFFGENRNNLNATVMISLVILI 75

Query: 75  I-VPLLFLFYYGMLEMKEL---VSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSH 129
           + VP     +    E + L   + + V +    + VP ++ ++P  G   S    +  + 
Sbjct: 76  VGVPFTCAIFILQHEGRNLYFDLQRQVFSGH--LSVPDFIRNLPFIGKEISRTLNEINTD 133

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLD----YCLSIIFMIIALFFFYRDGFSIS 185
           P S       +++++           +G + L+      + + F I++LFFFYRDG +I 
Sbjct: 134 PNSTIQNIAAWVQSH---------LSYGRVLLNEISKNIVKLCFAILSLFFFYRDGHTIL 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            Q+    E +           + +  R+   G+ + AI + ++ G +Y++AGVP+ + L 
Sbjct: 185 TQVSKALEMVIGPRIHHYLDTISETTRAVVYGVGLTAIAQAVLAGLSYFVAGVPNPMVLT 244

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           + T ++A+IP G P+S+  V ++L  +G    A  + LWG + +   D  +RP ++ G  
Sbjct: 245 IATFLLALIPFGTPVSYLGVGLWLFSQGQTMEAIGVILWGVLIVSSSDNVIRPLVISGAT 304

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           ++PFL   FG++GG+ + GL+GLFIGPV++A++  IW+E
Sbjct: 305 QIPFLLIMFGVLGGIASFGLVGLFIGPVILAVLLAIWRE 343


>gi|307727746|ref|YP_003910959.1| hypothetical protein BC1003_5755 [Burkholderia sp. CCGE1003]
 gi|307588271|gb|ADN61668.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1003]
          Length = 369

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 177/338 (52%), Gaps = 25/338 (7%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA-------VIATVSVM 71
           ++L++L+ ++ F   V  A ++    WP+      +K E S +L+          T+++ 
Sbjct: 42  LVLLALWVVRDFLPVVGWAGVLAIALWPLL-----RKVEGSRWLSGRTTLIAAALTLAIA 96

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW-TKHLSHP 130
            L ++P+       + E  +L      A ++GI +P ++  +P G+  +E W   +L+ P
Sbjct: 97  LLVVLPVGVGIAQALREAHDLSEWFKAAQENGIAMPDFIHRLPFGVQQAEAWWQAYLAPP 156

Query: 131 ----QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                ++K L  T + T G          FG   +       FM++ LF  ++ G  +S 
Sbjct: 157 LRDSAAMKGLHSTTVVTLG--------RHFGARAVHAVTVFAFMLVTLFVIFQAGPRLSG 208

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L    +  F     ++ + +   +R T  G+ ++ +GEG +LG AY++ G+P    L +
Sbjct: 209 ALARGLQRGFGEDGAQLVQRMATAVRGTVSGLVVVGLGEGALLGVAYFVTGLPHVALLAL 268

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           IT+I AM+P  API+F+  +++L  +G++  A  L ++G+I +F+ +  +RP L+G   +
Sbjct: 269 ITSIAAMLPFCAPITFSLAALWLFSQGSVAGAIGLLVFGSIVVFVAEHFVRPVLIGNSTR 328

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           LPFL   FG++GG  T GLLGLFIGP LM ++ V+W +
Sbjct: 329 LPFLLVLFGILGGAETFGLLGLFIGPALMTVLMVLWTD 366


>gi|325123669|gb|ADY83192.1| hypothetical protein BDGL_002606 [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 372

 Score =  136 bits (343), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 172/339 (50%), Gaps = 22/339 (6%)

Query: 17  MFIILVSLYF--LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +F IL+ L F  LK F  PVL A II + +WPIY        ES   L     +S++ L 
Sbjct: 16  LFFILIFLGFNILKYFIVPVLWAAIIAYMTWPIYLRIQRFFGESRNTLNATLMISLVILV 75

Query: 75  I-VPLLFLFYYGMLEMKEL---VSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSH 129
           + +P     +    E + L   + + V +    + VP ++ D+P  G   S    +  + 
Sbjct: 76  VGIPFTCAVFILQHEGRNLYFDLQRQVFSGH--LSVPDFIRDLPFVGKEISRTLNELNND 133

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFL----DYCLSIIFMIIALFFFYRDGFSIS 185
           P S       +++++           +G + L       + + F + +LFFFYRDG  I 
Sbjct: 134 PNSTIQNIAAWVQSH---------LSYGRVLLGEISKNIVKLGFAVFSLFFFYRDGQMIL 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            Q+    E +           + +  R+   G+ + AI + ++ G +Y++AGVP+ + L 
Sbjct: 185 SQVSKALEMVIGPRIHHYLDTISETTRAVVYGVGLTAIAQAVLAGLSYFVAGVPNPMVLT 244

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++T ++A+IP G PIS+  V ++L  +G    A  + +WG + +   D  +RP ++ G  
Sbjct: 245 IVTFLLALIPFGTPISYLGVGLWLFSQGQTMEAIGVVVWGVLIVSSSDNVIRPLVISGAT 304

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           K+PFL   FG++GG+ + GL+GLFIGPV++A++  IW+E
Sbjct: 305 KIPFLLIMFGVLGGIASFGLVGLFIGPVILAILLAIWRE 343


>gi|293610761|ref|ZP_06693061.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827105|gb|EFF85470.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 372

 Score =  136 bits (343), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 172/339 (50%), Gaps = 22/339 (6%)

Query: 17  MFIILVSLYF--LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +F IL+ L F  LK F  PVL A II + +WPIY        ES   L     +S++ L 
Sbjct: 16  LFFILIFLGFNILKYFIVPVLWAAIIAYMTWPIYLRIQRFFGESRNTLNATLMISLVILV 75

Query: 75  I-VPLLFLFYYGMLEMKEL---VSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSH 129
           + +P     +    E + L   + + V +    + VP ++ D+P  G   S    +  + 
Sbjct: 76  VGIPFTCAVFILQHEGRNLYFDLQRQVFSGH--LSVPDFIRDLPFVGKEISRTLNELNND 133

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFL----DYCLSIIFMIIALFFFYRDGFSIS 185
           P S       +++++           +G + L       + + F + +LFFFYRDG  I 
Sbjct: 134 PNSTIQNIAAWVQSH---------LSYGRVLLGEISKNIVKLGFAVFSLFFFYRDGQMIL 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            Q+    E +           + +  R+   G+ + AI + ++ G +Y++AGVP+ + L 
Sbjct: 185 SQVSKALEMVIGPRIHHYLDTISETTRAVVYGVGLTAIAQAVLAGLSYFVAGVPNPMVLT 244

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++T ++A+IP G PIS+  V ++L  +G    A  + +WG + +   D  +RP ++ G  
Sbjct: 245 IVTFLLALIPFGTPISYLGVGLWLFSQGQTMEAIGVVVWGVLIVSSSDNVIRPLVISGAT 304

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           K+PFL   FG++GG+ + GL+GLFIGPV++A++  IW+E
Sbjct: 305 KIPFLLIMFGVLGGIASFGLVGLFIGPVILAILLAIWRE 343


>gi|53803180|ref|YP_115110.1| hypothetical protein MCA2709 [Methylococcus capsulatus str. Bath]
 gi|53756941|gb|AAU91232.1| conserved hypothetical integral membrane protein [Methylococcus
           capsulatus str. Bath]
          Length = 362

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 166/334 (49%), Gaps = 22/334 (6%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           ++ F   +  A+ + + +WP+++    + E   T  A++ T  +  + + PL++L     
Sbjct: 25  VRPFLVSIGWAVFVSYVAWPLHAWSQRRFEGRKTLSALVTTALLGSVVLAPLIWLAVLLQ 84

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E+ EL+  +    +    +P ++S IP                  L+ + + F   +G+
Sbjct: 85  GEVSELIRSLPDWLEQKPRLPDFVSHIP-------------YFGNELQAVVDQFEDLHGL 131

Query: 147 --DFIPRFASRFG------MIFLDYCLSIIFMII-ALFFFYRDGFSISQQLDSLGEHLFP 197
                P +  R G      M  L    +++FM +  LFF +RDG  ++  +  +   +  
Sbjct: 132 LKRHAPEWVRRLGSPVLGIMTTLVQNAAVLFMTLFTLFFLFRDGLQLATDVRRVFTRVLG 191

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
              K     +   +++   G+ + A+ +G + G  YW+ GV + + LG+ T ++AMIP G
Sbjct: 192 ERLKGYFATIEATVKAVLYGIVLTALAQGFLAGLGYWIVGVKAPIVLGIATTLIAMIPFG 251

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P ++ +VSI+LL++G  +    L LWG + +  +D  +RP ++     +PF+   FG++
Sbjct: 252 TPFAWGSVSIWLLLQGETWAGVSLALWGTLVISWIDNIIRPLVISSATHIPFVLVMFGVL 311

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           GG+ + G +GL +GPV++A+   +W+E +  ++E
Sbjct: 312 GGLASFGFIGLVLGPVILAMALAVWREWLQQVRE 345


>gi|91778406|ref|YP_553614.1| hypothetical protein Bxe_B1702 [Burkholderia xenovorans LB400]
 gi|91691066|gb|ABE34264.1| putative membrane protein [Burkholderia xenovorans LB400]
          Length = 360

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 169/329 (51%), Gaps = 7/329 (2%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK--EESSTFLAVIATVSVMCLFIV 76
           ++L++L+ ++ F A V  A +I    WP+       +     +T +A + T+ +  L ++
Sbjct: 33  LVLLALWVVRDFIAVVAWAGVIAIALWPLLRKVEGNRWFTGRTTLIAAVLTLLIALLVVL 92

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA-SELWTKHLSHPQSLKI 135
           P+       + E  +L        ++GIP+P ++  +P G+   S  W  +L+ P    +
Sbjct: 93  PVGIGIAQALREAHDLNEWFKTVQENGIPLPDFVQHLPFGVQQISTWWQANLTQP----L 148

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                +K      +      FG   +       FM++ LF  ++ G  +S  L       
Sbjct: 149 RESAAMKGLHSPAVVTLGRHFGARAVHAVTVFAFMLVTLFVIFQAGPRLSGALLKGMRRG 208

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F     ++ + +   +R T  G+ ++ +GEG +LG AY++ G+P    L  +TAI AM+P
Sbjct: 209 FGDDGAQLLQRMAAAVRGTVSGLVVVGLGEGALLGVAYFVTGLPHVALLAFVTAIAAMLP 268

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
             AP++F   +++LL +G++  A  L ++GA+ +F+ +  +RP L+G   +LPFL   FG
Sbjct: 269 FCAPLTFGIAALWLLSQGSVAAAIGLAVFGAVVVFVAEHFVRPVLIGNSTRLPFLLVLFG 328

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           ++GG  T GLLG+FIGP LM ++ V+W +
Sbjct: 329 ILGGAETFGLLGIFIGPALMTVLMVLWTD 357


>gi|167565423|ref|ZP_02358339.1| hypothetical protein BoklE_22909 [Burkholderia oklahomensis EO147]
          Length = 356

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/258 (32%), Positives = 135/258 (52%), Gaps = 5/258 (1%)

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
           +  EL+  +  A Q GIP P  L+ +P G   AS  W  +L+ P    +  E  +K    
Sbjct: 100 QSHELLGWLHRAEQTGIPAPDALAHLPFGSQQASAWWHAYLAKP----LHPEAAVKGVDG 155

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +  F   FG       +   FM++ LF  ++ G  +S  L +     F      + + 
Sbjct: 156 GAVVTFGRHFGSRIAHAAVLFGFMLVTLFVIFQAGPRLSGALLTGVRRAFGDNGAALLQR 215

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           +   +  T  G+ ++  GEG++LG AY  AG+P    LG++TAI AM+P  AP+ F   +
Sbjct: 216 MAAAVYGTVTGLVVVGFGEGVLLGVAYAFAGLPHAALLGLVTAIAAMLPFCAPLVFCGAA 275

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           ++L ++G +  A  L  +G + +F+ +  +RP L+G   +LPFL   FG++GG  T GLL
Sbjct: 276 LWLFVQGAVGWAIGLAAFGFVVVFVAEHFVRPVLIGNSARLPFLLVLFGILGGAETFGLL 335

Query: 327 GLFIGPVLMALIAVIWKE 344
           GLFIGP LM ++ V+W E
Sbjct: 336 GLFIGPALMTVLTVLWVE 353


>gi|93005128|ref|YP_579565.1| hypothetical protein Pcryo_0297 [Psychrobacter cryohalolentis K5]
 gi|92392806|gb|ABE74081.1| protein of unknown function UPF0118 [Psychrobacter cryohalolentis
           K5]
          Length = 379

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 169/332 (50%), Gaps = 21/332 (6%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F  P L A I+ + ++PIY+ F  +   SS F A I TVS+  +  VPL+   +    E 
Sbjct: 34  FIVPALWAAILAYVTFPIYNFFHQRVRFSSNFSAAIMTVSITLMIGVPLVAGIFILQQEA 93

Query: 90  KELVSKVVLANQHG-IPVPRWLSDIP--GGMWASELWTKHLSHPQ----SLKILSETFLK 142
             L+S +V   + G + VP  + D+P  G      LW  +  +P+    + ++  ++ L 
Sbjct: 94  LSLISNLVYRIKVGYLDVPDSVKDLPIIGQQVKDVLWRIN-KNPEGTLEAFRLWVQSHLY 152

Query: 143 TNGIDFIPRFAS--RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
              I F   F+S  + GM            ++ LFFFYRDG S+ +Q+     ++     
Sbjct: 153 YGKIAFDVVFSSLAKLGM-----------ALMTLFFFYRDGTSLVRQIRQALRNIIGNRI 201

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
                 V    R+   G+ + A+ + L+ G  Y+ A  PS + + ++T I+A+IP G P 
Sbjct: 202 DGYIDSVGTTTRAVVYGIGLTALAQALLAGIGYYFASAPSPILMTIVTFIIALIPFGTPF 261

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +  VS++LL +G+      L LWG + +  VD  +RP ++ G  K+PF+  F G++GG+
Sbjct: 262 VWGGVSLWLLSQGHTVEGIGLALWGILVISWVDNLIRPIVISGATKIPFIIIFIGVLGGL 321

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              G +GLFIGPV++A+   +W+E I   K +
Sbjct: 322 TAFGFVGLFIGPVVLAIGLAVWREWISQHKND 353


>gi|254563916|ref|YP_003071011.1| hypothetical protein METDI5602 [Methylobacterium extorquens DM4]
 gi|254271194|emb|CAX27206.1| Conserved hypothetical protein, putative inner membrane protein,
           putative permease [Methylobacterium extorquens DM4]
          Length = 359

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/330 (31%), Positives = 167/330 (50%), Gaps = 7/330 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISK--KEESSTFLAVIATVSVMCLFIVPLLFLF 82
           Y L GF   ++ A+++    WP+ +    +      +     + T  V  + ++P+  L 
Sbjct: 32  YILSGFLRALVWAVVLAIALWPLLNRAHRRFPPGRHNILWPAVFTGLVALVLLLPIGVLA 91

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA-SELWTKHLSHPQSLKILSETFL 141
                E  +L++    A ++GIPVP +++ +P G  A +E W  HL+H      LSE   
Sbjct: 92  VEAGREAHDLLAYAREAERNGIPVPDFVARLPYGAAAVTEWWNAHLAHAGLAHELSERLN 151

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            T+  D         G   +   +   F ++ALFF +R+G ++  Q       LF    +
Sbjct: 152 TTSNRDLT----RSLGAGLVHRVVLFGFCLLALFFLFREGDTVIAQSLRASHRLFGPRGE 207

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +++R +   +  T  G+ ++ IGEG +LG  Y  AGVP  V  G +TA+ AMIP GAP++
Sbjct: 208 RVARQMVASVHGTVDGLVLVGIGEGFLLGIVYAFAGVPHPVLFGALTAVAAMIPFGAPLA 267

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +  LL  G    A  +   G +  F+ D  +RP L+GG  +LPFL    G++GGV 
Sbjct: 268 FGLAAALLLAGGAAVPAAIVVAAGFVVTFVADHFVRPALIGGTTRLPFLWVLLGILGGVE 327

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           T GLLGLF+GP +MA + ++W+E     +E
Sbjct: 328 TFGLLGLFVGPAVMAALILLWREFTEGSQE 357


>gi|260549903|ref|ZP_05824119.1| permease [Acinetobacter sp. RUH2624]
 gi|260407153|gb|EEX00630.1| permease [Acinetobacter sp. RUH2624]
          Length = 372

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 166/339 (48%), Gaps = 44/339 (12%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI-VPLLFLFYYG 85
           LK F  PV+ A II + +WPIY        E+   L     +S + L + VPL+   +  
Sbjct: 28  LKYFIVPVVWAAIIAYMTWPIYLRIQRFFGENRNNLNATVMISFVILVVGVPLICAIFIL 87

Query: 86  MLEMKEL---VSKVVLANQHGIP------------VPRWLSDI---PGGMWAS-ELWTK- 125
             E + L   + + V +    +P            + R L+DI   P     S   W + 
Sbjct: 88  QHEGRNLYLDLQRQVFSGHLSVPDFIKNLPFIGKEITRTLNDINTDPNSTIQSIAAWIQS 147

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           HLS+ + L            I+ I +   + G           F I++LFFFYRDG +I 
Sbjct: 148 HLSYGRVL------------INEISKNLVKLG-----------FAILSLFFFYRDGHTIL 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            Q+    E +           + +  R+   G+ + AI + ++ G +Y++AGVP+ + L 
Sbjct: 185 TQVSKALEMVIGLRIHHYLDTISETTRAVVYGVGLTAIAQAVLAGLSYFVAGVPNPMVLT 244

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           + T ++A+IP G P+S+  V ++L  +G    A  + LWG + +   D  +RP ++ G  
Sbjct: 245 IATFLLALIPFGTPVSYLGVGLWLFSQGQTMEAIGVVLWGVLIVSSSDNVIRPLVISGAT 304

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           ++PFL   FG++GG+ + GL+GLFIGPV++A++  IW+E
Sbjct: 305 QIPFLLIMFGVLGGIASFGLVGLFIGPVILAVLLAIWRE 343


>gi|58038598|ref|YP_190562.1| putative permease [Gluconobacter oxydans 621H]
 gi|58001012|gb|AAW59906.1| Putative permease [Gluconobacter oxydans 621H]
          Length = 374

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 167/329 (50%), Gaps = 6/329 (1%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + +F + + LY LKGF   +L   +   + WP+Y      +   S +L ++ T++V  +F
Sbjct: 32  LALFFVAIGLYTLKGFLPALLWGCVFAISIWPLYRR-TELRFGRSDWLPMVFTLAVALIF 90

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQSL 133
           +VP+  +      E +  +  +     +GIP+P W+  +P     A+  W  H++ PQ L
Sbjct: 91  LVPVSLVGVKVADEARSALEWIDDVRNNGIPMPEWVPHLPFLSAQATNWWQNHMTSPQRL 150

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
             L  +    +G+    +  S+             F ++ LFF  +DG S+ ++     +
Sbjct: 151 SHLLHSVDVGHGMQMTKQVGSQLA----RRGTLFAFSLLTLFFLLKDGDSVIRKCLLGSQ 206

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            LF    + +++ +   +  T  G+ ++ +GEG ++G  Y   G P  +   ++TA+ AM
Sbjct: 207 RLFGEQGESLAKQMISSVHGTLAGLVLVGLGEGAIMGIVYMATGAPQPLLFAMVTAVAAM 266

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP  A  +   V++ LL K ++  A  +   G++ +FI D  +RP L+GG  K+PFL   
Sbjct: 267 IPFLAWPTVGLVALLLLAKSSMIGAIVVSAVGSVVIFIADHFIRPALIGGSTKMPFLWVL 326

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            G++GG  T GLLGLF+GP +MA + ++W
Sbjct: 327 LGILGGAETWGLLGLFLGPAIMAALHLLW 355


>gi|330821380|ref|YP_004350242.1| hypothetical protein bgla_2g22990 [Burkholderia gladioli BSR3]
 gi|327373375|gb|AEA64730.1| hypothetical protein bgla_2g22990 [Burkholderia gladioli BSR3]
          Length = 356

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/250 (36%), Positives = 137/250 (54%), Gaps = 6/250 (2%)

Query: 99  ANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFG 157
           A  +GIPVP  +S +P G    S  W  +L+ P    + + T +K    +    +   FG
Sbjct: 110 ARLNGIPVPDAVSHLPFGAQQVSTWWQANLAQP----LHAPTGVKAMNSEAFVSYGKAFG 165

Query: 158 MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG 217
              +   +   FM++ LF  +R G +IS  L    +  F A    + + +   I  T  G
Sbjct: 166 SRVVHAAVLFGFMLVTLFVIFRAGPNISASLMRGVQRAFGANGASLIQRMASAIYGTVTG 225

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIF 276
           + ++ +GEG +LG AY  AGVP    LG++TA+ AM+P  API F   +I+L L++G   
Sbjct: 226 LVVVGLGEGALLGIAYAFAGVPHAALLGLVTAVAAMLPFCAPIVFCGAAIWLFLVQGATG 285

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            A  L ++G + +F+ +  +RP L+GG  +LPFL   FG++GG  T GLLGLFIGP LM 
Sbjct: 286 WAIGLAVFGFVVVFVAEHFVRPVLIGGSARLPFLLVLFGILGGAETFGLLGLFIGPALMT 345

Query: 337 LIAVIWKESI 346
           ++ V+W E I
Sbjct: 346 VLTVLWTEWI 355


>gi|296112637|ref|YP_003626575.1| hypothetical protein MCR_0410 [Moraxella catarrhalis RH4]
 gi|295920331|gb|ADG60682.1| conserved hypothetical protein [Moraxella catarrhalis RH4]
 gi|326560897|gb|EGE11262.1| hypothetical protein E9G_03549 [Moraxella catarrhalis 7169]
 gi|326563867|gb|EGE14118.1| hypothetical protein E9M_02983 [Moraxella catarrhalis 46P47B1]
 gi|326566876|gb|EGE17015.1| hypothetical protein E9K_01168 [Moraxella catarrhalis 103P14B1]
 gi|326569796|gb|EGE19846.1| hypothetical protein E9U_05771 [Moraxella catarrhalis BC8]
 gi|326571292|gb|EGE21314.1| hypothetical protein E9Q_00168 [Moraxella catarrhalis BC1]
 gi|326571600|gb|EGE21615.1| hypothetical protein E9S_03234 [Moraxella catarrhalis BC7]
 gi|326575122|gb|EGE25050.1| hypothetical protein E9W_03963 [Moraxella catarrhalis CO72]
 gi|326576792|gb|EGE26699.1| hypothetical protein E9Y_02270 [Moraxella catarrhalis 101P30B1]
 gi|326577531|gb|EGE27408.1| hypothetical protein EA1_02057 [Moraxella catarrhalis O35E]
          Length = 390

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 168/338 (49%), Gaps = 22/338 (6%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F  P L A I+ + ++PIY+ F +K   S +F A + T  +  +  VPL+   +Y   E+
Sbjct: 34  FIVPALWAGILAYVTFPIYTFFHTKVRLSPSFSAFLMTFCISLMIGVPLIVGVFYLQHEV 93

Query: 90  KELVSKVVLANQHG-IPVPRWLSDIP--GGMWASELWTKHLSHPQSLK-----ILSETFL 141
              V  V+   Q G + +P  + D+P  G      LW  + +   +++     + S  + 
Sbjct: 94  LSFVGMVIRRLQAGYLDLPSQIKDLPVIGQTIKDTLWEINKNPETTMEAVRAWVQSHLYY 153

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                D + +  ++ GM            ++ LFFFYRDG S+ +Q+     ++      
Sbjct: 154 GKMAFDAVLKNLAKLGM-----------ALMTLFFFYRDGKSLVRQIRQAMRNIIGDRID 202

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
                V    ++   G+ + A+ + ++ G  Y     P+ + L +IT ++A+IP G P +
Sbjct: 203 DYIDSVGATTQAVVYGIGLTALAQAILAGMGYAFTNAPNPILLTLITFVVALIPFGTPFA 262

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +  V+++LL +G+      L LWG + +  VD  +RP ++ G  K+PF+  F G++GG+ 
Sbjct: 263 WGGVAVWLLSQGHTTEGIGLGLWGILVISWVDNLIRPIVISGATKIPFIIIFIGVLGGLT 322

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             G +GLFIGPV++A+   +W+E    I ++K +I  N
Sbjct: 323 AFGFVGLFIGPVVLAIGLAVWRE---WISQHKNEIFIN 357


>gi|262280291|ref|ZP_06058075.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258069|gb|EEY76803.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 372

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 170/339 (50%), Gaps = 22/339 (6%)

Query: 17  MFIILVSLYF--LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +F IL+ L F  LK F  PVL A II + +WPIY        E+   L     +S++ L 
Sbjct: 16  LFFILIFLGFNILKYFIVPVLWAAIIAYMTWPIYLRIQRFFGETRNTLNATLMISLVILV 75

Query: 75  I-VPLLFLFYYGMLEMKEL---VSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSH 129
           + +P     +    E + L   + + V +    + VP ++ D+P  G   S    +  + 
Sbjct: 76  VGIPFTCAIFILQHEGRNLYFDLQRQVFSGH--LSVPDFIRDLPFVGKEISRTLNELNND 133

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFL----DYCLSIIFMIIALFFFYRDGFSIS 185
           P S       +++++           +G + L       + + F + +LFFFYRDG  I 
Sbjct: 134 PNSTIQNIAAWVQSH---------LSYGRVLLGEISKNIVKLGFAVFSLFFFYRDGQLIL 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            Q+    E +           + +  R+   G+ + AI +  + G +Y++AGVP+ + L 
Sbjct: 185 TQVSKALEMVIGPRIHHYLDTISETTRAVVYGVGLTAIAQAFLAGLSYFVAGVPNPMVLT 244

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           + T I+A+IP G PIS+  V ++L  +G    A  + +WG + +   D  +RP ++ G  
Sbjct: 245 IATFILALIPFGTPISYLGVGLWLFSQGQTMEAIGVIVWGILIVSSSDNVIRPLVISGAT 304

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           K+PFL   FG++GG+ + GL+GLFIGPV++A++  IW+E
Sbjct: 305 KIPFLLIMFGVLGGIASFGLVGLFIGPVILAILLAIWRE 343


>gi|71064848|ref|YP_263575.1| hypothetical protein Psyc_0271 [Psychrobacter arcticus 273-4]
 gi|71037833|gb|AAZ18141.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
          Length = 379

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 104/356 (29%), Positives = 180/356 (50%), Gaps = 26/356 (7%)

Query: 11  IMRWMIMFIILVSLYFL-----KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           I++ ++   +LV L+ L     + F  P L   I+ + ++PIY+ F  +   SS F A I
Sbjct: 10  IIQRLLAITLLVVLFVLCFQVVRFFIVPALWGAILAYVTFPIYNFFHQRVRFSSNFSATI 69

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIP--GGMWASEL 122
            TVS+  +  VPL+   +    E   L+S +V   + G + VP  + D+P  G      L
Sbjct: 70  MTVSITLMIGVPLVAGIFILQQEALSLISNLVYRIKAGYLDVPDSVKDLPVIGQQVKDVL 129

Query: 123 WTKHLSHP----QSLKILSETFLKTNGIDFIPRFAS--RFGMIFLDYCLSIIFMIIALFF 176
           W  +  +P    ++ ++  ++ L    I F   F+S  + GM            ++ LFF
Sbjct: 130 WRVN-KNPAGTLETFRLWVQSHLYYGKIAFDVVFSSLAKLGM-----------ALMTLFF 177

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
           FYRDG S+ +Q+     ++           V    R+   G+ + A+ + L+ G  Y+ A
Sbjct: 178 FYRDGTSLVRQIRQALRNIIGNRIDGYIDSVGTTTRAVVYGIGLTALAQALLAGIGYYFA 237

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
             PS + + ++T I+A+IP G P  + ++S++LL +G+      L LWG + +  VD  +
Sbjct: 238 SAPSPILMTILTFIIALIPFGTPFVWGSISLFLLSQGHTVEGIGLALWGILVISWVDNLI 297

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           RP ++ G  K+PF+  F G++GG+   G +GLFIGPV++A+   +W+E I   K  
Sbjct: 298 RPIVISGATKIPFIIIFIGVLGGLTAFGFVGLFIGPVVLAIGLAVWREWISQHKNE 353


>gi|307821972|ref|ZP_07652204.1| protein of unknown function UPF0118 [Methylobacter tundripaludum
           SV96]
 gi|307736538|gb|EFO07383.1| protein of unknown function UPF0118 [Methylobacter tundripaludum
           SV96]
          Length = 381

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 174/332 (52%), Gaps = 7/332 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKE--ESSTFLAVIATVSVMCLFIVPLLFLF 82
           + L  F A ++ A+++  T+WPIY   ++  E     T+ A++ T+ +  L +VPL +  
Sbjct: 19  WVLHSFLALLVWAVVLAITTWPIYQRLLASNEIHGKVTWGALLLTLLIGALILVPLGYGL 78

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQSLKILSETFL 141
              + E + L   +  A   GIP P WL  IP  G WA + W   L +P    +++   L
Sbjct: 79  SRLLNEAQSLGQILTEAQNVGIPPPVWLETIPMIGNWAKDTWMNALGNP----VVANESL 134

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
              G      +   F    L      +  ++ LFF Y+ G  +SQ + +    LF     
Sbjct: 135 HWLGTGSAITYTKDFASQLLHRFFGFLLTLLVLFFVYQHGTGLSQYVLATNRKLFGETGV 194

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           + +      +R+T  G+ ++ +GEGL+LG  Y LAG+     LG +T + AMIP  A + 
Sbjct: 195 RYAIHATAAVRATVNGLVLVGLGEGLLLGVGYALAGLSHPAMLGALTGVFAMIPFAAKLI 254

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F A S+ L+ +G++   + LF++G + + + D  +RP L+GG +KLPF+ T  G+ GG+ 
Sbjct: 255 FGACSLVLIAEGHMAAGSSLFVFGVVVILLADNYVRPRLIGGAVKLPFIWTLLGIFGGLE 314

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             GLLGLF+GP LMA++  IW++ +  + + K
Sbjct: 315 NFGLLGLFLGPTLMAVLISIWRDWVADMDKPK 346


>gi|307822136|ref|ZP_07652368.1| calcium-translocating P-type ATPase, PMCA-type [Methylobacter
           tundripaludum SV96]
 gi|307736702|gb|EFO07547.1| calcium-translocating P-type ATPase, PMCA-type [Methylobacter
           tundripaludum SV96]
          Length = 1256

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 91/342 (26%), Positives = 169/342 (49%), Gaps = 30/342 (8%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L+ F   +  ALII +  WP Y     + +  +T  A     +VM   I  +LFL  Y +
Sbjct: 30  LREFLLTLAWALIIAYVVWPPYRYLRQQLKGDATLSA-----AVMTTIIAAVLFLTVYWL 84

Query: 87  LEM---------KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           + M         + LVS      Q+   +P ++S IP     ++ W + L+  ++  I  
Sbjct: 85  VAMLQDELKTAYQTLVSDF---GQNTYRLPDFISRIPWLGSTAQEWLERLTDDRAAVI-- 139

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLD----YCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                    D+  +++  F   FL     Y + +  +++ +FF +RDG    +QL     
Sbjct: 140 -----AQFADWAQQWSGEFAK-FLGGIGRYIMKLGVILVTVFFCFRDGDEAVRQLHQGLV 193

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                Y            R+   G+ + A+G+G++ G  Y +AGV + V LG +TA++A+
Sbjct: 194 RFLGKYQDVYLEAAGHTTRAVVYGLVLAALGQGMLAGLGYAVAGVQAPVLLGAVTALLAL 253

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +P GA + +  V I L++    +    L LWG + +  VD  +RP ++ G  ++PFL   
Sbjct: 254 VPMGATLVWMPVGIVLVLTEQTWQGIGLLLWGFLVVSTVDNVIRPLVISGAGRIPFLVVL 313

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           FG++GG+   G +GLF+GPV++A++  +W ++ + +++++E+
Sbjct: 314 FGVLGGLSAFGAIGLFLGPVILAVLLSVW-QAWLKLQQHEEQ 354


>gi|148654006|ref|YP_001281099.1| hypothetical protein PsycPRwf_2209 [Psychrobacter sp. PRwf-1]
 gi|148573090|gb|ABQ95149.1| protein of unknown function UPF0118 [Psychrobacter sp. PRwf-1]
          Length = 409

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 166/324 (51%), Gaps = 17/324 (5%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F  P L A I+ + ++PIY+ F  K + S    A I TVS+  +  VP++   +    E 
Sbjct: 34  FIVPALWAAILAYVTFPIYNFFHKKVKLSPNISAGIMTVSISLMLGVPIVLGLFVLQQEA 93

Query: 90  KELVSKVVLANQHG-IPVPRWLSDIP--GGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
             L S ++   + G + VP+ + ++P  G      LW  +     SL      +L+++  
Sbjct: 94  VNLYSNLLYRIKVGYVDVPQEIKNLPVIGQQIKDILWEINKDPEASLSAF-RAWLQSH-- 150

Query: 147 DFIPRFASRFGMIFLDYCLSII----FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                    +G + LD   S +      ++ +FFFYRDG S+ +Q+     ++       
Sbjct: 151 -------LYYGKVALDVAFSTMAKLGMALMTIFFFYRDGISLIKQIRQALRNIIGNRIDD 203

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
               V    ++   G+ + A+ + L+ G  Y+ AG PS + L ++T ++A++P G P ++
Sbjct: 204 YLDSVGSTTQAVVYGIGLTALAQALLAGVGYYFAGAPSPILLTLMTFVVALVPFGTPFAW 263

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             VSI+LL +G+   A  L LWG + +  VD  +RP ++ G  K+PF+  F G++GG+  
Sbjct: 264 MGVSIWLLTQGHTPEAIGLALWGMLVISWVDNLIRPIVISGATKIPFIIIFIGVLGGLTA 323

Query: 323 MGLLGLFIGPVLMALIAVIWKESI 346
            G +GLFIGPV++A+   +W+E I
Sbjct: 324 FGFVGLFIGPVVLAIALAVWREWI 347


>gi|262373577|ref|ZP_06066855.1| permease [Acinetobacter junii SH205]
 gi|262311330|gb|EEY92416.1| permease [Acinetobacter junii SH205]
          Length = 372

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 171/328 (52%), Gaps = 21/328 (6%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKK---EESSTFLAVIATVSVMCLFIVPLLFLFY 83
           LK F  PVL A II + +WP+Y  ++ ++   E   T  A I    V+ +  +P +F  +
Sbjct: 35  LKYFIVPVLWAAIIAYMTWPVYL-WVQRRFFGENRPTLNATIMITLVILVIGIPFIFAIF 93

Query: 84  YGMLEMKEL---VSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQSLKILSET 139
              LE + L   + K + +    I VP ++ ++P  G   S    +  + P S+      
Sbjct: 94  MLQLEGRNLYFNLQKQLFSGH--IQVPDFIRNLPIIGKDISRTVNELSADPNSIT----- 146

Query: 140 FLKTNGIDFIPRFAS--RFGMIFLDYCL-SIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               N  ++I    S  RF +  +   L  + F I+ LFFFYRDG  I  Q+    E + 
Sbjct: 147 ---KNVAEWIQGHLSYGRFVLSEISRNLVKLTFAIMTLFFFYRDGQLILSQVSRALEMVI 203

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                     + +  R+   G+ + A+ + ++ G +Y++A VP+ + L ++T I+A+IP 
Sbjct: 204 GPRVHHYLETISETTRAVVYGVGLTAVAQAILAGLSYFVADVPNPMLLTMVTFILALIPF 263

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           G PIS+ +V ++L  +G    A  + +WG + +   D  +RP ++ G  K+PF+   FG+
Sbjct: 264 GTPISYLSVGLWLFAQGQTVEAIGVVVWGLLVVSSSDNVIRPLVISGATKIPFILIMFGV 323

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           +GG+ + GL+GLFIGPV++A++  IW+E
Sbjct: 324 LGGIASFGLVGLFIGPVILAILLAIWRE 351


>gi|296157947|ref|ZP_06840780.1| protein of unknown function UPF0118 [Burkholderia sp. Ch1-1]
 gi|295891715|gb|EFG71500.1| protein of unknown function UPF0118 [Burkholderia sp. Ch1-1]
          Length = 368

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 103/359 (28%), Positives = 179/359 (49%), Gaps = 8/359 (2%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYF-LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           TM + + +++ +++  ILV  Y  L  F  PV  ALII + +WP+Y    +     +   
Sbjct: 6   TMPDRKRVIQAVLLAAILVLGYVVLWPFVIPVAWALIIAYVTWPLYCRLHALIRGRAWIS 65

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPG-GMWAS 120
           A++ T+ V  +  +P+  L      E   L   V      G + +P +++ IP  G    
Sbjct: 66  ALLMTLLVGMIAFIPIASLISPVFREFLALYRNVAEYAASGPLRIPDFIARIPWLGHALQ 125

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +L ++    PQ L      ++  +G  +I   AS  G +  +  + + F  + LFF YRD
Sbjct: 126 QLVSEFADDPQRL----HAYITQSGDRWIGELASMVGSVGRN-AIKLGFATLTLFFAYRD 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G ++ +Q+  +   +           +  V RS   G+ + AI +G + G  YW AGV +
Sbjct: 181 GHTLLRQVQRVMRPVLGDRLDGYLSAIGGVTRSVVYGLALTAIVQGALAGLGYWAAGVEA 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + L +IT + A+IP G P  +  V I L+  GN F    L LWGA+ +  VD  +RP +
Sbjct: 241 PLLLTIITTLAALIPFGTPFVWIPVGIGLIANGNTFAGVGLLLWGALVVSWVDNLIRPVV 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +   +++PFL   FG++GG+   G +GLF+GPV++A++  +W+E   +  E     S++
Sbjct: 301 ISNAVRVPFLLVLFGVLGGIGAFGFIGLFVGPVVVAILLALWREWCTSEPETGSVDSAD 359


>gi|170742961|ref|YP_001771616.1| hypothetical protein M446_4853 [Methylobacterium sp. 4-46]
 gi|168197235|gb|ACA19182.1| protein of unknown function UPF0118 [Methylobacterium sp. 4-46]
          Length = 361

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 168/332 (50%), Gaps = 6/332 (1%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL-AVIATVSVMCL 73
           +++ +  V L+ L  F   ++ A+I+    WP+Y+    +     T L   + T+    +
Sbjct: 24  LVLGLAAVGLWTLHEFLPALVWAVILAIALWPLYARIAGRHRAGRTILWPALFTLGAALV 83

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
            +VPL  L      E ++++       + G PVP +++ +P G    +  W   LSHP  
Sbjct: 84  VLVPLAVLAVQAAREARDVLHFWRQIEEQGWPVPDFVARLPFGASQVASWWQDTLSHPAG 143

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
              L     +++ +         FG   +   +   F ++ LFF +RDG +++ Q  +  
Sbjct: 144 SSELLHRLDRSSLLGV----GRSFGGQIVHRAMLFGFTLLTLFFLFRDGPALAGQALAAC 199

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             LF    ++++  +   +  T  G+ ++ +GEG++LG  Y  AGVP  V LG  TA+ A
Sbjct: 200 RRLFGPRGERVAHQMAASVHGTVDGLVLVGLGEGVLLGIVYAFAGVPHPVLLGAFTALAA 259

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           MIP  AP+ F   +     +G++  A  + + G +  F+ D  +RP L+GG  +LPFL  
Sbjct: 260 MIPFAAPVVFALAAALAAAQGSLVAAAVVVVAGFVVTFVADHFVRPALIGGATRLPFLWV 319

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             G++GGV T GLLGLF+GP +MA + ++W+E
Sbjct: 320 LLGILGGVETFGLLGLFLGPAIMAALVLLWRE 351


>gi|299768601|ref|YP_003730627.1| hypothetical protein AOLE_01755 [Acinetobacter sp. DR1]
 gi|298698689|gb|ADI89254.1| hypothetical protein AOLE_01755 [Acinetobacter sp. DR1]
          Length = 372

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 171/339 (50%), Gaps = 22/339 (6%)

Query: 17  MFIILVSLYF--LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +F IL+ L F  LK F  PVL A II + +WPIY        E+   L     +S++ L 
Sbjct: 16  LFFILIFLGFNILKYFIVPVLWAAIIAYMTWPIYLRIQRFFGETRNTLNATLMISLVILV 75

Query: 75  I-VPLLFLFYYGMLEMKEL---VSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSH 129
           + VP     +    E + L   + + V +    + VP ++ D+P  G   S    +  + 
Sbjct: 76  VGVPFTCAIFILQHEGRNLYFDLQRQVFSGH--LSVPDFIRDLPFVGKEISRTLNELNND 133

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFL----DYCLSIIFMIIALFFFYRDGFSIS 185
           P S       +++++           +G + L       + + F + +LFFFYRDG  I 
Sbjct: 134 PNSTIQNVAAWVQSH---------LSYGRVLLGEISKNIVKLGFAVFSLFFFYRDGQMIL 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            Q+    E +           + +  R+   G+ + AI + ++ G +Y++AGVP+ + L 
Sbjct: 185 SQVSKALEMVIGPRIHHYLDTISETTRAVVYGVGLTAIAQAVLAGLSYFVAGVPNPMVLT 244

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           + T ++A+IP G PIS+  V ++L  +G    A  + +WG + +   D  +RP ++ G  
Sbjct: 245 IATFLLALIPFGTPISYLGVGLWLFSQGQTMEAIGVVVWGVVIVSSSDNVIRPLVISGAT 304

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           K+PFL   FG++GG+ + GL+GLFIGPV++A++  IW+E
Sbjct: 305 KIPFLLIMFGVLGGIASFGLVGLFIGPVILAILLAIWRE 343


>gi|270157435|ref|ZP_06186092.1| putative membrane protein [Legionella longbeachae D-4968]
 gi|269989460|gb|EEZ95714.1| putative membrane protein [Legionella longbeachae D-4968]
          Length = 307

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 159/309 (51%), Gaps = 17/309 (5%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSS---FISKKEESSTFLAVIATVSVMCLFI 75
           II +SL+ +  F   ++ A II   ++P+Y     F   K++ S  L       ++ L +
Sbjct: 7   IIALSLFIIHRFIPSMIWASIIVIATYPLYERWRRFFGSKDDLSALLFTTLIGLLLLLPL 66

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW-ASEL---WTKHLSHPQ 131
             L+ L    + E++  ++ +   N+ G   P +L + P   W  S+L   W  ++  P 
Sbjct: 67  SWLVGLL---IKELQIFINFLQSLNEKGGMAPEFLKNFP---WIGSDLVVYWDNNIGKPG 120

Query: 132 SLK-ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +K +LS   L      +   +  + G       + + F +++LFFFYRDG  +  Q+  
Sbjct: 121 MIKGLLSNIHLSLTPTSY---YVKQIGSNLAHRSVQVGFTLLSLFFFYRDGDRLITQIYL 177

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +GE+     W + +  +PK +R+T  G  ++ +G G ++G  Y L G P+   +G ITA+
Sbjct: 178 VGENCLGKRWFRYADRLPKALRATVNGTIVVGLGVGFLMGVCYGLVGFPAPTLVGFITAL 237

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            AMIP   PI F  V++ L   G++F A  + +WG + +F+ D  ++P L+GG I+LPFL
Sbjct: 238 AAMIPFVVPIVFITVAMILFAFGSMFGAIAVLVWGTLVMFVADHFIKPALIGGAIELPFL 297

Query: 311 PTFFGLVGG 319
              FG++GG
Sbjct: 298 AVLFGILGG 306


>gi|198282946|ref|YP_002219267.1| hypothetical protein Lferr_0810 [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218666280|ref|YP_002425149.1| hypothetical protein AFE_0661 [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198247467|gb|ACH83060.1| protein of unknown function UPF0118 [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218518493|gb|ACK79079.1| membrane protein, putative [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 351

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 158/316 (50%), Gaps = 12/316 (3%)

Query: 31  FAPVLS-ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F P L  A I+ + +WP+      ++       A  AT+ +  +FI+P++FL      E+
Sbjct: 35  FLPALGWAAILVYATWPLAGPM--RRHWPPVPAAAGATLMLALIFILPVIFLSISLGTEL 92

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI-LSETFLKTNGIDF 148
             +++ +   + H   +   L+ IP   W  EL  +    P + K  L    L  +   +
Sbjct: 93  HHVLTDLGSVDAH-TTLEASLNRIP---WLHELLAQI---PAAWKTKLMPGALTPDLSAW 145

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
             R  S  G I   +   +I ++I  FFFYR G  +  QL      +         R V 
Sbjct: 146 AGRLGSVAGGIG-RFGTLLILVLITAFFFYRHGEVLVDQLRRFVGQVLGQRGDAYLRTVA 204

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
             IR+   G+   A+ +G + G  YW+AG+P+ V L ++T + + IP G P+ + A SI+
Sbjct: 205 STIRAVIYGILATAVAQGALAGLGYWVAGLPAPVLLAIVTLLFSFIPFGTPLVWGAASIW 264

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           LL +G I+    L LWG + +  +D  +RP ++   +++PFL   FG++GG+   G LGL
Sbjct: 265 LLSQGEIWAGVGLALWGTLVVSWIDNLIRPLVISNAVRIPFLLVLFGVLGGILAFGFLGL 324

Query: 329 FIGPVLMALIAVIWKE 344
           F+GPVL+A++  IW E
Sbjct: 325 FLGPVLLAVLLAIWSE 340


>gi|91778031|ref|YP_553239.1| hypothetical protein Bxe_B2098 [Burkholderia xenovorans LB400]
 gi|91690691|gb|ABE33889.1| Putative membrane protein [Burkholderia xenovorans LB400]
          Length = 368

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 174/343 (50%), Gaps = 8/343 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYF-LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           ML+ + +++ M++  ILV  Y  L  F  PV  ALII + +WP+Y    +     +   A
Sbjct: 7   MLDRKRVIQAMLLAAILVLGYVVLWPFVIPVAWALIIAYVTWPLYCRLHALIRGRAWISA 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPG-GMWASE 121
           ++ T+ V  +  +P+  L      E   L   V      G + VP +++ IP  G    +
Sbjct: 67  LLMTLLVGVVAFIPIASLISPVFREFLALYRNVAEYAASGPLRVPDFIARIPWLGHSLQQ 126

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L ++    PQ L      ++  +G  ++   AS  G +  +  + + F  + LFF YRDG
Sbjct: 127 LVSEFADDPQRL----HAYITQSGDRWVGELASMVGSVGRN-AVKLGFATLTLFFAYRDG 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            ++  Q+  +   +           +  V RS   G+ + A+ +G + G  YW AGV + 
Sbjct: 182 RALLLQVQGVMRPVLGDRLDGYLSAIGGVTRSVVYGLALTAVVQGALAGLGYWAAGVKAP 241

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           + L +IT + A+IP G P  +  V + L+  GN+F    L LWGA+ +  VD  +RP ++
Sbjct: 242 LLLTIITTLAALIPFGTPFVWIPVGVGLIANGNMFAGVGLLLWGALVVSWVDNLIRPMVI 301

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              +++PFL   FG++GG+   G +GLF+GPV++A++  +W+E
Sbjct: 302 SNAVRVPFLLILFGVLGGIGAFGFIGLFVGPVVVAILLALWRE 344


>gi|126643157|ref|YP_001086141.1| hypothetical protein A1S_3142 [Acinetobacter baumannii ATCC 17978]
          Length = 329

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 109/180 (60%)

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
           + + F I++LFFFYRDG +I  Q+    E +           + +  R+   G+ + AI 
Sbjct: 121 VKLCFAILSLFFFYRDGHTILTQVSKALEMVIGPRIHHYLDTISETTRAVVYGVGLTAIA 180

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLW 284
           + ++ G +Y++AGVP+ + L + T ++A+IP G P+S+  V ++L  +G    A  + LW
Sbjct: 181 QAVLAGLSYFVAGVPNPMVLTIATFLLALIPFGTPVSYLGVGLWLFSQGQTMEAIGVILW 240

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           G + +   D  +RP ++ G  ++PFL   FG++GG+ + GL+GLFIGPV++A++  IW+E
Sbjct: 241 GVLIVSSSDNVIRPLVISGATQIPFLLIMFGVLGGIASFGLVGLFIGPVILAVLLAIWRE 300


>gi|257091790|ref|YP_003165431.1| hypothetical protein CAP2UW1_0142 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044314|gb|ACV33502.1| protein of unknown function UPF0118 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 375

 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 175/354 (49%), Gaps = 20/354 (5%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK------KEESSTFLAVIATVSVM 71
            I+++S + L  F   +L+A +    SWP+Y+ F ++      +  SS    +I T+++ 
Sbjct: 29  LIVILSAWILNSFLQAMLAACVTAIASWPLYTRFAARLPRCIGRNSSS----LIFTLALT 84

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHP 130
              + PL+F F   + E   L+S + +A++ GI VP+ L + P  G W +  W   L+ P
Sbjct: 85  IFVLAPLMFAFGALLSEAHALLSAIAVADKKGIAVPQGLENAPLIGPWLAARWQSQLASP 144

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L   ++   +T+    +P +A   G   + +   I F ++ LFF Y++G S++     
Sbjct: 145 GALLTWTQ---RTDAAALVP-WAQSLGQFTVRHAFIIFFTVLLLFFLYQEGESLAAGFRR 200

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +       +    + +  + +R++   M ++A+ +GL  G AY + GVP       +T +
Sbjct: 201 VLRRCLGEHADGFADLATRAVRASVNSMLVVALFDGLASGVAYAIVGVPHAAVWAAVTGL 260

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +A++P    ++  A+++ L +             G   LF  DK +RP +    ++L F+
Sbjct: 261 LALVPFLGYVAVGALALQLAMTVTTTPPLLALGLGCFVLFCGDKVVRPVVACNGVRLRFV 320

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE-----SIMAIKENKEKISSN 359
               G +GG   +GL+GL IGPV++ L   +W++     +++ + ++  ++S +
Sbjct: 321 WVLMGCLGGFEVLGLIGLVIGPVVLTLARELWEQRVRDLAVVDVTDSNPQVSQS 374


>gi|331000798|ref|ZP_08324444.1| hypothetical protein HMPREF9439_02096 [Parasutterella
           excrementihominis YIT 11859]
 gi|329570326|gb|EGG52059.1| hypothetical protein HMPREF9439_02096 [Parasutterella
           excrementihominis YIT 11859]
          Length = 402

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 163/334 (48%), Gaps = 11/334 (3%)

Query: 31  FAPVLS-ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV-PLLFLFYYGMLE 88
           FA  +S A +I   SWP++   + K+      +A +  VS++ + IV P+  L      E
Sbjct: 33  FATAMSVAAVIAIVSWPLFKR-VRKEVGGRNLVATLIMVSLLAILIVLPIAGLSLVSAQE 91

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           +  L+  V      G  VP  L +IP  G WA       L + + L  +++        D
Sbjct: 92  IPTLIRYVREWIASGFTVPEELKEIPFVGEWAYTQAAHLLGNKEELAAIAQKLF-----D 146

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            + R A    ++  D  L +  M+  +FFFYRDG  +SQ+  +L   +  +   ++  I+
Sbjct: 147 PVSRAALAGAVMLGDGLLQLFLMLFVIFFFYRDGEVLSQKSLALLTRMSGSIGAEVRDII 206

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
               RS   G+   A G+G+V    +W+AGVP  + LGV   +++ +P G P+ +   + 
Sbjct: 207 VNTTRSVVFGIVGSAAGQGVVALIGFWIAGVPGAITLGVAVFVLSAVPIGPPLVWGPAAF 266

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +L  KG +  A  L LWG++ +  VD  L+P L+     LP    + G+ GGV   G +G
Sbjct: 267 WLYYKGEVGMAIFLVLWGSLAVSSVDNFLKPILISKGASLPLSLIYLGVFGGVLAFGFMG 326

Query: 328 LFIGPVLMALIAVIWKE--SIMAIKENKEKISSN 359
           + +GPV++A+   + K   S+ A   +K++ ++ 
Sbjct: 327 IILGPVVIAVGIAMSKTWLSVSATVNDKDQPTTK 360


>gi|303257155|ref|ZP_07343169.1| putative membrane protein [Burkholderiales bacterium 1_1_47]
 gi|302860646|gb|EFL83723.1| putative membrane protein [Burkholderiales bacterium 1_1_47]
          Length = 402

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 161/330 (48%), Gaps = 11/330 (3%)

Query: 31  FAPVLS-ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV-PLLFLFYYGMLE 88
           FA  +S A +I   SWP++   + K+      +A +  VS++ + IV P+  L      E
Sbjct: 33  FATAMSVAAVIAIVSWPLFKR-VRKEVGGRNLVATLIMVSLLAILIVLPIAGLSLVSAQE 91

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           +  L+  V      G  VP  L +IP  G WA       L + + L  +++        D
Sbjct: 92  IPTLIRYVREWIASGFTVPEELKEIPFVGEWAYTQAAHLLGNKEELAAIAQKLF-----D 146

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            + R A    ++  D  L +  M+  +FFFYRDG  +SQ+  +L   +  +   ++  I+
Sbjct: 147 PVSRAALAGAVMLGDGLLQLFLMLFVIFFFYRDGEVLSQKSLALLTRMSGSIGAEVRDII 206

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
               RS   G+   A G+G+V    +W+AGVP  + LGV   +++ +P G P+ +   + 
Sbjct: 207 VNTTRSVVFGIVGSAAGQGVVALIGFWIAGVPGAITLGVAVFVLSAVPIGPPLVWGPAAF 266

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +L  KG +  A  L LWG++ +  VD  L+P L+     LP    + G+ GGV   G +G
Sbjct: 267 WLYYKGEVGMAIFLVLWGSLAVSSVDNFLKPILISKGASLPLSLIYLGVFGGVLAFGFMG 326

Query: 328 LFIGPVLMALIAVIWKE--SIMAIKENKEK 355
           + +GPV++A+   + K   S+ A   +K++
Sbjct: 327 IILGPVVIAVGIAMSKTWLSVSATVNDKDQ 356


>gi|296115814|ref|ZP_06834440.1| hypothetical protein GXY_08485 [Gluconacetobacter hansenii ATCC
           23769]
 gi|295977791|gb|EFG84543.1| hypothetical protein GXY_08485 [Gluconacetobacter hansenii ATCC
           23769]
          Length = 352

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 171/343 (49%), Gaps = 16/343 (4%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           +  +I+ SLY  + F    +  +I+  T++P+Y   + ++   +   +++ +V +  L  
Sbjct: 16  VCLVIMASLYIEQSFLGAFVWGIILSITAFPLYQ-VLRRRGCGNMVASLVISVGIFALLA 74

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA-SELWTKHLSHPQSLK 134
           VPL+ +    + ++  L      A+Q GIPVP+ ++D+PGG    + LW K+LS P  L+
Sbjct: 75  VPLVAMVAKAVADLPSLYDWAKSASQTGIPVPKQVADLPGGSSKIAPLWQKYLSDPNELR 134

Query: 135 I----LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                +S TF   +G +   R         ++   + +  +++++FF     S+   + +
Sbjct: 135 TWLGSVSHTFATADGKNLTHRL--------MEVAETFMIAVLSVYFFLVSAESLIGDIRA 186

Query: 191 LGEH-LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +G+  L       I  IV  V R T  G+ ++ +GEG ++G  Y++AG P      ++TA
Sbjct: 187 VGKKFLGRRATDAIDNIVGSV-RGTVAGLVLVGMGEGGIIGIGYFMAGTPHPALFMLVTA 245

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I++++P   P+     +           A  + L G +  F  D  +RP L+ G  K+PF
Sbjct: 246 IVSIVPFCGPVILALAAATTFAASGGGAALIVGLIGCVAYFFGDHFVRPKLISGNTKIPF 305

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L     ++GG+   GLLGLFIGP ++A+   +W+ ++   + +
Sbjct: 306 LAVLTAILGGLHACGLLGLFIGPAVIAVAFSLWRSAVADSRAD 348


>gi|167572529|ref|ZP_02365403.1| hypothetical protein BoklC_22016 [Burkholderia oklahomensis C6786]
          Length = 231

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 120/230 (52%), Gaps = 4/230 (1%)

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
           G   AS  W  +L+ P    +  E  +K      +  F   FG       +   FM++ L
Sbjct: 3   GSQQASGWWHAYLAKP----LHPEAAVKGVDDGAVVTFGRHFGSRIAHAAVLFGFMLVTL 58

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           F  ++ G  +S  L +     F      + + +   +  T  G+ ++  GEG++LG AY 
Sbjct: 59  FVIFQAGPRLSGALLTGVRRAFGDNGAALLQRMAAAVYGTVTGLVVVGFGEGVLLGVAYA 118

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
            AG+P    LG++TA+ AM+P  AP+ F   +++L ++G +  A  L  +G + +F+ + 
Sbjct: 119 FAGLPHAALLGLVTAVAAMLPFCAPLVFCGAALWLFVQGAVGWAIGLAAFGFVVVFVAEH 178

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +RP L+G   +LPFL   FG++GG  T GLLGLFIGP LM ++ V+W E
Sbjct: 179 FVRPVLIGNSARLPFLLVLFGILGGAETFGLLGLFIGPALMTVLTVLWVE 228


>gi|296535339|ref|ZP_06897542.1| protein of hypothetical function UPF0118 [Roseomonas cervicalis
           ATCC 49957]
 gi|296264338|gb|EFH10760.1| protein of hypothetical function UPF0118 [Roseomonas cervicalis
           ATCC 49957]
          Length = 357

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 151/313 (48%), Gaps = 7/313 (2%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L+ F + +L A I+ F +WP Y +   +   S    A++     M L  +PLLF      
Sbjct: 33  LRPFLSALLWAAILAFCTWPAYRTLRDRLRLSPGLAALLMVTLEMLLVGLPLLFATPIRA 92

Query: 87  LEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHLSHPQ-SLKILSETFLKTN 144
            +++ L S V      G+P +  WL  IP   W  E   +     Q     L++      
Sbjct: 93  EDIEGLRSSVENLIASGLPGLSDWLGRIP---WVGEFLRERWDALQLDFTPLTDMLRPYA 149

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
           G+  I + A    +  L     +I  I+  FFFYRDG  ++  L+ L   +  A  +++ 
Sbjct: 150 GV--IAQQALGVLLAVLSGLAELILAILLSFFFYRDGPRMAAGLEGLVVRIAGAQARRLV 207

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
           ++   V      G+   A+ +GL+ G   W++GVP    L VI  I++++P GAP+ +  
Sbjct: 208 QLTANVTTGVVYGLLGTAVAQGLMTGFGLWISGVPQPALLAVIAGIISVLPVGAPLVWLP 267

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            +++L  +G+      L ++GA  +  VD  +RP+L+     LP L T  G +GGV   G
Sbjct: 268 AALWLFSQGSTGWGLFLLVYGAGGISSVDNVIRPWLISRGADLPLLLTILGALGGVFAFG 327

Query: 325 LLGLFIGPVLMAL 337
            LGLF+GPVL+A+
Sbjct: 328 FLGLFLGPVLLAV 340


>gi|319941451|ref|ZP_08015779.1| hypothetical protein HMPREF9464_00998 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805071|gb|EFW01901.1| hypothetical protein HMPREF9464_00998 [Sutterella wadsworthensis
           3_1_45B]
          Length = 383

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 155/314 (49%), Gaps = 12/314 (3%)

Query: 11  IMRWMIMFIILVSLYF-LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           I+R + M ++ V  Y  L+ F   +L A ++   +WP+++   S   +SST  A +  +S
Sbjct: 24  IIRIVFMVVVAVGCYLVLEPFLTAILIAAVLAVVTWPVFNKLRSGMRQSSTAAASVMVLS 83

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLS 128
           ++ L ++PL FL      ++   V       +  +P+ + +  IP  G W   L+ + +S
Sbjct: 84  IVVLVLIPLSFLLVALAQQVPRGVQAAAAWLKDPLPILQAVQSIPYAGDW---LYGELVS 140

Query: 129 --HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
              PQ+     +  L+     ++   A   G       + + F+   +FFFYRDG   + 
Sbjct: 141 AIDPQTFAHTMQRILEPLS-TWVLNAAVNVG----SGVMQLAFVTFIVFFFYRDGSWFAD 195

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           ++ ++ E +     ++I++I+    RS   G+   AIG+GLV G  +W+AGVP  + L  
Sbjct: 196 RISAVVERVSGGIAEEITKILVNTTRSVVFGIVGTAIGQGLVAGIGFWIAGVPGVLILSF 255

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
              ++++IP G P+ +   +++L  KG +  A  L LWG + +  VD  ++P L+     
Sbjct: 256 AVCVLSVIPIGPPLIWLPAAVWLWSKGELGMAAFLVLWGTLAVSSVDNFIKPLLIARGTS 315

Query: 307 LPFLPTFFGLVGGV 320
           +P    F G+ GGV
Sbjct: 316 MPIALIFLGVFGGV 329


>gi|326386386|ref|ZP_08208009.1| hypothetical protein Y88_2280 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326209047|gb|EGD59841.1| hypothetical protein Y88_2280 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 375

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 177/340 (52%), Gaps = 14/340 (4%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF-LAVIATVSVMCLF 74
           +  ++L  ++ L  F   +    I   + WPI+    +         L ++ T+ V+ +F
Sbjct: 33  VAVLVLAGIWTLHPFLPALGWGGIFAISLWPIHERCAAHWPSGRGLALPILFTLLVLLIF 92

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +VP++ +    + +       +  AN  G+PVP +++ +P G   +  W  +L  P+S+ 
Sbjct: 93  VVPMVMVASAVIHDSMAATQWLATANTQGVPVPDFVAHLPYGDHLAAWWQSYLGTPESIS 152

Query: 135 ILS----ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            LS    +  L+T G   +   A R         + + FM++ LFF  RDG S++Q L  
Sbjct: 153 RLSHRATDMHLQT-GEKILGGLAHRL--------ILLFFMLLTLFFLLRDGTSVAQALRI 203

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                F    ++++    + IR T  G+ I+  GEG++LG AY L+GV     LG++T +
Sbjct: 204 GSRRAFGEAGERVAHQAAQAIRGTVNGLVIVGFGEGVLLGFAYELSGVTHAALLGLLTGL 263

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           ++ IP GA ++  A +  L+  G+I  A  + + G + +F+ D  +RP  +GG  +LPFL
Sbjct: 264 LSAIPFGAMVAVAAAAGLLVADGSILAAGIVLVIGIVVIFVADHFVRPAFIGGATRLPFL 323

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
               G++GG+ T GL+GL +GP ++A++ ++W+E +  +K
Sbjct: 324 WVLLGILGGIETWGLIGLVMGPAIIAVLMLLWREWVGMVK 363


>gi|297539825|ref|YP_003675594.1| hypothetical protein M301_2662 [Methylotenera sp. 301]
 gi|297259172|gb|ADI31017.1| protein of unknown function UPF0118 [Methylotenera sp. 301]
          Length = 354

 Score =  112 bits (280), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 96/325 (29%), Positives = 165/325 (50%), Gaps = 10/325 (3%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F AP+  A ++ + SWP+            T  A +AT  +     +PL++L +   LE+
Sbjct: 32  FLAPIAWAGVLAYASWPVAERIRRWCNNKDTLAAFLATALLALTLFLPLIWLVWLAQLEL 91

Query: 90  KELVS--KVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQSLKILSETFLKTNGI 146
             L    +  LAN    PVP  L  +P  G W  +      ++P    ++ + +L  +  
Sbjct: 92  GHLFPALQAFLANPP--PVPETLRSLPWLGEWLMQQQAHFTANPNGASLVFKNWLAAHTA 149

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
           D +   A   G         +IF+++ LFFF+RDG  I ++L  + E    A+       
Sbjct: 150 D-LSMLAGGLG----KSLAKMIFVVVILFFFFRDGTRIVRELRHVLERFIGAHVHDYLHA 204

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
                R+   G+ + A+ +G+V G  YW+AG+ S V  GV+T I+A+IP G P+++ A  
Sbjct: 205 AGTTTRAVVYGILLTALVQGVVAGLGYWVAGLSSPVMFGVLTMILALIPFGTPLAWGAAG 264

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           + LL++G    A  +++WGA  +  +D  LRP  +     +PFL   FG++GG+   GL+
Sbjct: 265 LLLLLQGETGAAIGVWIWGAAIVSQLDNVLRPLFISSISPIPFLLVLFGVLGGLLAFGLV 324

Query: 327 GLFIGPVLMALIAVIWKESIMAIKE 351
           GLFIGP++++++  +W+E    + E
Sbjct: 325 GLFIGPIVLSVVWAVWREWTAHLDE 349


>gi|330811059|ref|YP_004355521.1| hypothetical protein PSEBR_a4112 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379167|gb|AEA70517.1| Conserved hypothetical protein; putative membrane protein
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 345

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 151/317 (47%), Gaps = 7/317 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           SL+ +  F++ +    ++ F SWP+            +  A + TV  M L  VPL++L 
Sbjct: 20  SLWVMAPFWSALFWGAVLAFASWPLMRLLTRWVNGRESLAAALLTVGWMLLVAVPLVWLG 79

Query: 83  YYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETF 140
           +     +++  + +  A   G+P  P WL+ +P  G     +W        +L + +  +
Sbjct: 80  FNLADHVRDATAFIKDAQVDGLPEAPTWLAGVPLVGERLVGIWNSIDQQGAALMVSARPY 139

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           L   G   + R A   G I L+  LSI+F+    FFFYRDG  ++  +  L E L     
Sbjct: 140 LGQVGNWLLARSAQIGGGI-LELTLSIVFV----FFFYRDGPRLAVFVHGLLERLIGDRA 194

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
                +V   ++    G+   A  + ++    + +AGVP  + LG++T ++++IP G P+
Sbjct: 195 GYYIELVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGVPGALVLGIVTFLLSLIPMGPPL 254

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +   + +L  KG    A  L +WG   +  VD  L+P+L+     LP +    G+ GG+
Sbjct: 255 VWIPATAWLAWKGEYGMAVFLGIWGTFIISGVDNVLKPYLISRGGNLPLVIVLLGVFGGL 314

Query: 321 RTMGLLGLFIGPVLMAL 337
              G +GLFIGP L+A+
Sbjct: 315 IAFGFIGLFIGPTLLAV 331


>gi|330994841|ref|ZP_08318763.1| UPF0118 inner membrane protein ydiK [Gluconacetobacter sp. SXCC-1]
 gi|329758102|gb|EGG74624.1| UPF0118 inner membrane protein ydiK [Gluconacetobacter sp. SXCC-1]
          Length = 331

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 154/322 (47%), Gaps = 17/322 (5%)

Query: 39  IIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVL 98
           I+  T++P+Y   + ++   +   A +   ++  L  VP++ +     +E+  L++    
Sbjct: 22  ILSITTYPLYRRLV-QRGMGNGLAAGLIAAAIFALLAVPMIAMAVRAGMELPSLMAWGRG 80

Query: 99  ANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQSLK----ILSETFLKTNGIDFIPRFA 153
           A   GIP+   ++ IP  G   + LW  +LS P+ L+    + S  F   +G +   R  
Sbjct: 81  ALHDGIPLSPQVAAIPHIGPRLAGLWRHYLSDPEELRHWTAVASRMFATGDGRELPHRV- 139

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
                  +D   + +   ++++F+     ++   + ++G     A  + + R     +R 
Sbjct: 140 -------MDMTETFVIATLSVYFYLAASRTLQADIRAVGSRFLGARARDVIRNTVGAVRG 192

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
           T  G+ ++ +G+G+++G  Y++AG P    L ++TA++++IP   P+   A  +      
Sbjct: 193 TVAGLVLVGLGQGVLVGIGYFIAGTPHPALLTLLTAVVSIIPFCGPVLLCATMLMTFAAN 252

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
            +  A  + + GAI     D  +RP L+ G   +PFL     ++GG+   GLLGLFIGP 
Sbjct: 253 GVTQAVIVGVIGAIAYGAGDHFVRPRLISGSTSIPFLAVLTAILGGLHMFGLLGLFIGPT 312

Query: 334 LMALIAVIWKESIMAIKENKEK 355
           ++A+   +W+    A  E + +
Sbjct: 313 VIAVALSLWRT---AAAEEQAR 331


>gi|297539685|ref|YP_003675454.1| hypothetical protein M301_2517 [Methylotenera sp. 301]
 gi|297259032|gb|ADI30877.1| protein of unknown function UPF0118 [Methylotenera sp. 301]
          Length = 352

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 166/337 (49%), Gaps = 10/337 (2%)

Query: 5   MLNPQGIMRWMIMFIILV-SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           M+N   + R  I+ ++++  +Y L+ F A  L A I    +WP+Y     +  +  T+ A
Sbjct: 1   MINTNQVTRIAIITLLVIGCIYVLQPFMAAALFAAIFCLFTWPLYHRLWLRLGKRDTWAA 60

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASE 121
           +I T+ ++   I+P+ +L         +L +++    Q   P VP W+ ++P  G   S 
Sbjct: 61  MIMTLLLLIALILPMAYLAMNLADSSDQLFNELGTRLQSLQPKVPDWVRNLPIVGEQISH 120

Query: 122 LWTKHLSHPQSL-KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            W +  +  + L K+L + +      + +  FA R   +     L ++ ++   FFFYRD
Sbjct: 121 SWERATASQEELMKLLRQYY------EPMRTFALRAVQLVAGGFLQLLLVVFVAFFFYRD 174

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  I+Q L ++   L     +++  +    ++   LG+   A+ + +V    + LAG P+
Sbjct: 175 GTRIAQGLVTIVRRLGGELGEEMLILSCNTVKGVMLGIFGTALAQSVVAMIGFLLAGAPA 234

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + L   T  +++IP G P+ +   S +L  +G    A  L L+G + +  VD  ++P L
Sbjct: 235 PLLLACATFFLSVIPVGPPLIWGGASFWLYSQGEHGWAIFLALYGLLAISTVDNVVKPIL 294

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           +     LP L   FG++GG  T G +G+F+GP L+A+
Sbjct: 295 ISHSSHLPLLLIVFGVLGGALTFGFIGIFLGPTLLAV 331


>gi|70729140|ref|YP_258876.1| hypothetical protein PFL_1750 [Pseudomonas fluorescens Pf-5]
 gi|68343439|gb|AAY91045.1| membrane protein, putative [Pseudomonas fluorescens Pf-5]
          Length = 350

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 155/336 (46%), Gaps = 10/336 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           S + +  F++ +    ++ F SWP+            +  A + T+  M L   PL++L 
Sbjct: 20  SFWVMAPFWSALFWGAVLAFASWPLMRLLTRWLNGRESLAAALLTLGWMVLVAAPLVWLG 79

Query: 83  YYGMLEMKELVSKVVLANQHGIPV-PRWLSDIP-GGMWASELWTKHLSHPQSLKILSETF 140
                 +++  + +      G+P  P WL ++P  G     LW        +L +  + +
Sbjct: 80  LNLADHVRDATAFIKDVQVDGLPAAPEWLGNLPLVGERLVGLWNSIDQQGAALMLAVKPY 139

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           L   G   + R A   G I L+  LSI+F+    FFFYRDG  ++  +  L E L     
Sbjct: 140 LGQVGNWLLARSAQIGGGI-LELTLSIVFV----FFFYRDGPRLALFVHKLLERLIGERA 194

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
                +V   ++    G+   A  +GL+    + +AGVP  + LG++T ++++IP G P+
Sbjct: 195 GYYIDLVAGTVQRVVNGVIGTAAAQGLLALIGFLIAGVPGALVLGIVTFLLSLIPMGPPL 254

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +   + +L  KG    A  L +WG   +  VD  L+P+L+     LP +    G+ GG+
Sbjct: 255 VWIPATAWLAWKGEYGMAVFLGIWGTFIISGVDNVLKPYLISRGGNLPLVIVLLGVFGGL 314

Query: 321 RTMGLLGLFIGPVLMAL---IAVIWKESIMAIKENK 353
              G +GLFIGP L+A+   + + W  S    +E +
Sbjct: 315 IAFGFIGLFIGPTLLAVAYSLLLDWSASQARAQEPR 350


>gi|330816979|ref|YP_004360684.1| hypothetical protein bgla_1g20910 [Burkholderia gladioli BSR3]
 gi|327369372|gb|AEA60728.1| hypothetical protein bgla_1g20910 [Burkholderia gladioli BSR3]
          Length = 347

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 148/320 (46%), Gaps = 7/320 (2%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L+ F   +  ALII + SWP++    S      +  A++ T  V  + +VP+L L     
Sbjct: 26  LRPFLVSMTWALIIAYVSWPVHQRMQSLTNHRRSISALLTTSLVTVVLVVPILLLALPLS 85

Query: 87  LEMKELVSKVV--LANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            E  E   ++    +++H   +PR  S +P   W   +W +  +            L   
Sbjct: 86  RESVEFAHRMAAWFSDRHHT-LPRLASSVP---WLG-VWLQAAADDIGRDARESRALLAQ 140

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
             +     A++         L   F ++ LFF YRDG ++  QL  + E L    +    
Sbjct: 141 WGNHAMGAAAQLAANAGRNALKFGFAVLTLFFVYRDGRTVLDQLRLVFEPLLGKRFDVYL 200

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
             + +V  +   G  + A  +G   G  YW AGV + + L V+TA+ A+ P G P  +  
Sbjct: 201 ASIGEVCCAVAYGGVLTATAQGTAAGIGYWAAGVEAPLLLSVLTALAALFPFGTPFVWVP 260

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           V + LL+ G ++    L  WG + +  +D  +RP L+ G  ++PFL   F ++GG+   G
Sbjct: 261 VGLALLLDGRLWAGVSLLAWGTLAISGIDNLVRPLLISGGTRMPFLLAVFSILGGIAAFG 320

Query: 325 LLGLFIGPVLMALIAVIWKE 344
            +G F+GP+++A +  +W+E
Sbjct: 321 FVGFFLGPIVVATLLAVWRE 340


>gi|325527793|gb|EGD05065.1| hypothetical protein B1M_08312 [Burkholderia sp. TJI49]
          Length = 314

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 133/282 (47%), Gaps = 7/282 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKK--EESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+   F S +      T +A + TV++  L ++P+    
Sbjct: 36  WVIRAFIPAIAWACVIAIAMWPLLKRFESHRLVRNRPTIVATVITVAISLLVVLPVALAL 95

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFL 141
              + +  ++   +     +GIP+P  +S +P G    ++ W  +L HP      +    
Sbjct: 96  TQAIAQAHDMRVWLRTIQDNGIPLPDVVSRLPYGSTQIADWWQANLGHPLHA---ASAMH 152

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             NG  FI  F   FG       L   FM++ LF   R G  +S  L       F A   
Sbjct: 153 GVNGEKFIA-FGRLFGTKLAHALLEFGFMLVTLFVILRAGHKLSGALLQGARRAFGADGA 211

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           ++   +   +  T  G+ ++ +GEG +LG AY LAGVP    LG++TA+ AM+P  AP+ 
Sbjct: 212 QLIERMVGAVNGTVTGLVVVGLGEGALLGIAYALAGVPHAALLGLVTAVAAMLPFCAPVV 271

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           F   +++L ++G    A  + + G + +F+ +  +RP L+GG
Sbjct: 272 FCGAALWLFVQGATTWAVVVAVTGFVVVFVAEHFVRPVLIGG 313


>gi|312959876|ref|ZP_07774391.1| hypothetical protein PFWH6_1780 [Pseudomonas fluorescens WH6]
 gi|311285823|gb|EFQ64389.1| hypothetical protein PFWH6_1780 [Pseudomonas fluorescens WH6]
          Length = 353

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 150/317 (47%), Gaps = 7/317 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           S + +  F++ +    ++ F SWP+            +  A I T+  M L  VPL++L 
Sbjct: 20  SFWVMAPFWSALFWGAVLAFASWPLMVLLTRWLGGRESLAAGILTLGWMLLVAVPLVWLG 79

Query: 83  YYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETF 140
           +     +++ V+ +      G+P  P WL  IP  G     +W        +L +  + +
Sbjct: 80  FNLADHVRDAVALIKDIQVDGLPEAPTWLGSIPFVGERLVGMWNSIDQQGAALMVSIKPY 139

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           L   G   + R A   G I L+  LS++F+    FFFYRDG  ++  +  L E L     
Sbjct: 140 LGQVGNWLLARSAQIGGGI-LELTLSLVFV----FFFYRDGPRLAMFVHRLLERLIGDRA 194

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
                +V   ++    G+   A  + ++    + +AGVP  + LG++T ++++IP G P+
Sbjct: 195 GYYIELVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGVPGALVLGIVTFLLSLIPMGPPL 254

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +   + +L  KG+   A  L +WG   +  VD  L+P+L+     LP +    G+ GG+
Sbjct: 255 VWIPATAWLAWKGDYTYAVFLGVWGTFIISGVDNVLKPYLISRGGNLPLVIVLLGVFGGL 314

Query: 321 RTMGLLGLFIGPVLMAL 337
              G +GLFIGP L+A+
Sbjct: 315 IAFGFIGLFIGPTLLAV 331


>gi|220921861|ref|YP_002497162.1| hypothetical protein Mnod_1869 [Methylobacterium nodulans ORS 2060]
 gi|219946467|gb|ACL56859.1| protein of unknown function UPF0118 [Methylobacterium nodulans ORS
           2060]
          Length = 363

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 172/346 (49%), Gaps = 7/346 (2%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK--KEESS 59
           RET  +       M++ +  + L+ L GF   ++ A+I+    WP+Y+    +      +
Sbjct: 12  RETERSHAVARAAMVLGLASIGLWTLHGFLPALVWAVILTIALWPLYARLTRRFPGGRHN 71

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMW 118
                + T+++  + +VPL F+      E  +++       + G PVP  ++ +P G   
Sbjct: 72  LLWPSLFTLALALVILVPLAFVAVQAAREAHDVLQFWRQIEEQGWPVPEAVAHLPFGAAQ 131

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            S  W ++L HP     L     +++ I         FG       +   F ++ LFF +
Sbjct: 132 VSAWWQENLGHPAGTSDLLHRIERSSLIGL----GGSFGKQIAHRVVLFGFTLLTLFFLF 187

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           RDG ++++Q       LF +  ++++R +   +  T  G+ ++ +GEG +LG  Y  AGV
Sbjct: 188 RDGPAVAEQGLVACRRLFGSRGERVARQMAASVHGTVDGLVLVGLGEGFLLGLVYHFAGV 247

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  V LG  TA+ AMIP    + F   ++   + G++  A  + + G +  F+ D  +RP
Sbjct: 248 PHPVLLGAATALAAMIPFAVVVVFGLAAVLAAVNGSVAAAAVVVIAGMVVTFVADHFVRP 307

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            L+GG  +LPFL    G++GGV   GLLGLF+GP +MA + ++W++
Sbjct: 308 ALIGGATRLPFLWVLLGILGGVENFGLLGLFLGPAVMAALVLLWRD 353


>gi|77460421|ref|YP_349928.1| hypothetical protein Pfl01_4200 [Pseudomonas fluorescens Pf0-1]
 gi|77384424|gb|ABA75937.1| putative membrane protein [Pseudomonas fluorescens Pf0-1]
          Length = 346

 Score =  105 bits (263), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 150/317 (47%), Gaps = 7/317 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           S + +  F++ +    ++ F SWP+            +  A++ T+  M L   PL++L 
Sbjct: 20  SFWVMAPFWSALFWGAVLAFASWPLMRLLTRWLNGRESLAALLLTMGWMLLVAGPLVWLG 79

Query: 83  YYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETF 140
           +     +++  + +      G+P  P WL  +P  G     +W        +L +  + +
Sbjct: 80  FNLADHVRDATAFIKDVQVDGLPEAPSWLGGVPLVGERLVGIWNSIDQQGAALMVTVKPY 139

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           L   G   + R +++ G   L+  LSI+F+    FFFYRDG  ++  + SL E L     
Sbjct: 140 LGQVGNWLLAR-SAQIGSGILELTLSIVFV----FFFYRDGPRLAAFVHSLLERLIGDRA 194

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
                +V   ++    G+   A  + ++    + +AGVP  + LG++T ++++IP G P+
Sbjct: 195 GYYIDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGVPGALVLGIVTFLLSLIPMGPPL 254

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +   + +L  KG    A  L +WG   +  VD  L+P+L+     LP +    G+ GG+
Sbjct: 255 VWIPATAWLAWKGEYGMAVFLGIWGTFIISGVDNVLKPYLISRGGNLPLVIVLLGVFGGL 314

Query: 321 RTMGLLGLFIGPVLMAL 337
              G +GLFIGP L+A+
Sbjct: 315 IAFGFIGLFIGPTLLAV 331


>gi|134096432|ref|YP_001101507.1| hypothetical protein HEAR3279 [Herminiimonas arsenicoxydans]
 gi|133740335|emb|CAL63386.1| Conserved hypothetical protein, putative permease [Herminiimonas
           arsenicoxydans]
          Length = 369

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 103/361 (28%), Positives = 173/361 (47%), Gaps = 17/361 (4%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
            +M  P+   +  +  +I+ SL F   L  F+  V  A ++     P Y   + K  + S
Sbjct: 9   HSMNYPEIQQKTFLGLLIIFSLAFIGILLPFYGAVFWAAVLAILFSPFYRKLLIKMNQHS 68

Query: 60  TFLAVIATVSVMCLFIV--PLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGG 116
             LA +AT+  MCL +V  PL+ +    + E   L + +       G+   + +S +P  
Sbjct: 69  N-LAALATLG-MCLVVVIIPLVLISISLVHEASALYANIRSGQIDFGVFFQKVISALPS- 125

Query: 117 MWA-SELWTKHLSHPQSLKI-LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
            W  S+L    L+   SL+  LS   ++  G +FI + A   G    ++ +S   M+  L
Sbjct: 126 -WVVSQLERFGLTDMTSLQAKLSNAAVQ--GSEFITKQAISIGQNTFNFLVSFTIMLYIL 182

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           FF  RDG  I+ ++      L   + + +   +   IR+T  G  I+A  +G + G A+W
Sbjct: 183 FFLLRDGDRIATRIKQ-AAPLNAEHKRLLFNNLTTAIRATVKGNIIVAAVQGALGGIAFW 241

Query: 235 LAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
             GV   +  GV+ A ++++P  GA + +  V+IY L+ G ++    L  +G + + +VD
Sbjct: 242 FLGVQGALLWGVLMAFLSLLPAVGAALIWVPVAIYFLLTGAVWQGVTLIAFGVLVIGLVD 301

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             LRP LVG   +LP        VGG+  +GL G  IGPV+ AL   +W E   + K+ +
Sbjct: 302 NILRPMLVGKDTQLPDFVVLISTVGGMAWLGLNGFVIGPVIAALFISLW-EIFSSGKQKQ 360

Query: 354 E 354
           E
Sbjct: 361 E 361


>gi|167034729|ref|YP_001669960.1| hypothetical protein PputGB1_3734 [Pseudomonas putida GB-1]
 gi|166861217|gb|ABY99624.1| protein of unknown function UPF0118 [Pseudomonas putida GB-1]
          Length = 350

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 150/312 (48%), Gaps = 11/312 (3%)

Query: 32  APVLSAL----IIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           AP +SAL    I+ F SWP+            T  A + T + + +  +PL++L +    
Sbjct: 25  APFISALLWGAILAFASWPLMRLLTRLLGGRETLAASLLTTAWILIVALPLVWLGFNLAD 84

Query: 88  EMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            +++  + V      G+P  P WL  IP  G      W        +L   ++ +    G
Sbjct: 85  HIRDATAFVRDVQVDGLPEAPAWLGGIPFVGERLVNWWQSLDQQGAALLASAKPYFGQVG 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              + R +++ G   L+  LS++F+    FFFYRDG  ++  +  L   L     +   +
Sbjct: 145 NWLLAR-SAQIGSGVLELTLSLVFV----FFFYRDGPRLAAFVLRLLHRLMGERAEYYLQ 199

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
           +V   ++    G+   A  +GL+    + +AGVP  + LG++T ++++IP G P+++   
Sbjct: 200 LVAGTVQRVVNGVIGTAAAQGLLALIGFLIAGVPGAIVLGLVTFMLSLIPMGPPLAWIPA 259

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           + +L+ KG    A  L +WG   +  VD  L+P+L+     LP +    G+ GG+   G 
Sbjct: 260 TGWLVWKGEYGMAVFLGIWGTFVISGVDNVLKPYLISRGGNLPLVIVLLGVFGGLLAFGF 319

Query: 326 LGLFIGPVLMAL 337
           +GLFIGP L+A+
Sbjct: 320 IGLFIGPTLLAV 331


>gi|206890655|ref|YP_002249261.1| hypothetical protein THEYE_A1463 [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206742593|gb|ACI21650.1| membrane protein, putative [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 357

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 158/331 (47%), Gaps = 46/331 (13%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           LK FFA    A++I     P++  ++ K  +     AV+  + V+ LF+ P +++ Y  +
Sbjct: 35  LKSFFASAGWAIVIALVFHPVFD-YLKKFLKYRGLTAVVTIILVIVLFLFPFVYVSYQII 93

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG- 145
           LE  EL+         G+ +P  +++I             +SHP   KIL +    T G 
Sbjct: 94  LEAGELIK--------GVNLPELINEI-------------MSHPLLSKILEKLSFITGGD 132

Query: 146 ---IDFIP-------------RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              ++ I              R A  FG I L   L++I      FFF +DG    ++++
Sbjct: 133 IASLEIIIKNELSGLLKEGALRIAHGFGDI-LSLFLNLILTFFIAFFFLKDGHHFVKKIE 191

Query: 190 SLGEHLFPAYWKK--ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              E L  A   K  I   +  +I +TF G  +IA+ +G +LG  ++   +PS    G  
Sbjct: 192 ---EFLPFAEVDKTSIRNQIRNIIYTTFYGGILIAMLQGTILGITFYFLDMPSSTLWGFA 248

Query: 248 TAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           TA+ + IP  GA   +   SIYLL KG I     L + GA  + ++D  L+P ++ G +K
Sbjct: 249 TAVASFIPVLGAFAVWGPASIYLLAKGLIIKGLILAMVGAFIISLIDNVLKPLIIKGKVK 308

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           LP +  F  ++GG++  GL+G  IGP++ +L
Sbjct: 309 LPLIFIFLSVLGGIKIFGLIGFIIGPLVFSL 339


>gi|212704261|ref|ZP_03312389.1| hypothetical protein DESPIG_02316 [Desulfovibrio piger ATCC 29098]
 gi|212672341|gb|EEB32824.1| hypothetical protein DESPIG_02316 [Desulfovibrio piger ATCC 29098]
          Length = 368

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 156/329 (47%), Gaps = 22/329 (6%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           L+ L+ FF  +   ++I   S P+Y + + ++       A+   +  + L IVP  ++FY
Sbjct: 25  LWMLRPFFDVIFWGIVIALLSTPVYDA-LQRRRMGRNLAALTCVILSLVLIIVPCAYIFY 83

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL-KILSETFLK 142
             + E+  L +++             L ++  G+   +  T++   P+ + + LSE  +K
Sbjct: 84  TFINEVANLYARLTSGGHDIRETLERLREVAPGV--QDWLTRYGYGPEVITQKLSELAVK 141

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL-------GEHL 195
            +G+  + R     G   +++ + +  M+   FF  RDG    +QL  L       G+H 
Sbjct: 142 ISGL--VARNTVALGGSTVNFLVDLCIMLYLAFFLVRDG----KQLRVLLIRALPFGDHR 195

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
               + K +    +V+R+T  G  ++A+ +G + G  +W+ G+ + V  GV+  ++++IP
Sbjct: 196 EDLLFAKFA----EVLRATVKGSLLVAMAQGALGGLIFWILGIKAPVLWGVVMTLLSLIP 251

Query: 256 G-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             GA + +  V+ YLL+ G+  +   L  +G   + + D  LRP LVG   KLP      
Sbjct: 252 VVGAGVVWAPVAGYLLLTGDHVSGVVLLAYGVFVIGLADNILRPVLVGRDTKLPDFMVLL 311

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             +GG    G+ G   GP+L  L   +WK
Sbjct: 312 STLGGFSLFGMDGFVTGPMLAVLFVTVWK 340


>gi|115522818|ref|YP_779729.1| hypothetical protein RPE_0793 [Rhodopseudomonas palustris BisA53]
 gi|115516765|gb|ABJ04749.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           BisA53]
          Length = 355

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 163/347 (46%), Gaps = 30/347 (8%)

Query: 13  RWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           ++ ++ I  V+L F   L  F++ +L  L+I     P++    +   +  +  AV     
Sbjct: 7   KFFLLLIAAVTLAFGWVLMPFYSGLLWGLVIAILFMPLHRRLSAAMRDRDSLAAVSTVAI 66

Query: 70  VMCLFIVPLLFL---------FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           V+   ++PL  +           Y  L+ +E      L  Q    +P W++D     W +
Sbjct: 67  VIMSVLLPLSLIGAALAREAAITYSRLQSREF-DLARLWQQVTGALPSWIND-----WIN 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +    L   Q+   LS+  LK  G  F+   A   G    ++ +++  M+  LFF +RD
Sbjct: 121 RVELADLGELQN--KLSDGLLK--GSQFLAGQALTIGQNTFEFAINLGVMLYLLFFLFRD 176

Query: 181 GFSISQQL-DSL--GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
           G ++SQ++ D+L   EHLF     K   IV  VIR+T  G  +IA+ +G + G   W  G
Sbjct: 177 GEALSQRIRDALPMREHLFDELLTKF--IV--VIRATIKGNMVIAMLQGALGGLMLWFLG 232

Query: 238 VPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           +   +   V+ A ++++P  GA + +  V+IYLL  G ++    L  +G   + +VD  L
Sbjct: 233 IGGALLWAVVMAFLSLLPAIGAGLVWLPVAIYLLATGAVWKGVLLIAYGTFVIGMVDNLL 292

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           RP LVG   K+P        +GG+   GL G  +GPV+ A+   +W 
Sbjct: 293 RPILVGKDTKMPDYVVLISTLGGLEVFGLNGFILGPVIAAMFIAVWD 339


>gi|107026443|ref|YP_623954.1| permease-like [Burkholderia cenocepacia AU 1054]
 gi|105895817|gb|ABF78981.1| permease-like protein [Burkholderia cenocepacia AU 1054]
          Length = 385

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 115/253 (45%), Gaps = 7/253 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKK--EESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+   F S +      T +A + T ++  L ++P+    
Sbjct: 35  WVIRDFIPAIAWACVIAIAMWPLLKRFESHRLFRSRPTLIATVITAAISLLVVLPVAVAT 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFL 141
                +  +L   +     +GIP+P  +S +P G    +E W  +L HP      +    
Sbjct: 95  TQAFAQAHDLREWLHTVQDNGIPLPDVVSRLPYGAAQITEWWQANLGHPLHA---ATAMH 151

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             NG  FI  F  +FG       L   FM++ LF   R G  +S  L       F     
Sbjct: 152 GVNGEKFIA-FGRQFGTKLAHVLLEFGFMLVTLFVILRAGHKLSGALLQGARRAFGRNGA 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           ++   +   +  T  G+ ++ +GEG +LG AY LAGVP    LG++TA+ AM+P  AP+ 
Sbjct: 211 ELIERMVAAVYGTVTGLVVVGLGEGALLGVAYALAGVPHAALLGLVTAVAAMLPFCAPVV 270

Query: 262 FTAVSIYLLIKGN 274
           F   +++L ++G 
Sbjct: 271 FCGAALWLFVQGG 283


>gi|209965732|ref|YP_002298647.1| hypothetical protein RC1_2451 [Rhodospirillum centenum SW]
 gi|209959198|gb|ACI99834.1| conserved hypothetical protein [Rhodospirillum centenum SW]
          Length = 362

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 153/321 (47%), Gaps = 9/321 (2%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV-PLLFLFYYG 85
           +K F + +L A+I+ + +WP Y  ++ +       LA     ++  L IV P   +    
Sbjct: 27  VKPFLSALLLAVILVYATWPAYL-WVERTCGGRKNLAAFLMTALSSLVIVAPFAIVGATL 85

Query: 86  MLEMKELVSKVVLANQHGIPVPR-WLSDIP-GGMWASELWTKHLSHPQSLKILSETFLKT 143
              +  + S +    ++G P P  WL D+P  G WA   W    +  Q L     T L+ 
Sbjct: 86  ADSVGGISSGIRQIIENGPPPPPVWLGDVPLVGPWAVGYWADLTAGGQDLL----TLLR- 140

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           +GI      A   G +     L ++  +   FF YR G  I++Q+    E         +
Sbjct: 141 SGIRPATDLALAAGSVIGAGVLELMAAVFIAFFLYRGGRDIARQVAYAIERFTGPRVHHL 200

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
             +    ++    G+   A+ +G++ G  + +AG+P    LG +T ++++IP G P+ + 
Sbjct: 201 LEVAGGTVQGVIYGILGTALAQGILAGLGFVVAGIPWGPFLGFMTFVVSVIPMGPPLIWV 260

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
            VS++L  +G I  A  +  WG   +  VD  LRP+L+     LP +  F G++GGV   
Sbjct: 261 PVSVWLATEGEIGWAVAMAAWGFFVVSSVDNVLRPYLISRGSALPLVLVFMGVLGGVLAF 320

Query: 324 GLLGLFIGPVLMALIAVIWKE 344
           G++G+FIGPVL+AL   + +E
Sbjct: 321 GVIGIFIGPVLLALGYALMRE 341


>gi|297183286|gb|ADI19424.1| predicted permease [uncultured Pseudomonadales bacterium
           HF0500_12O04]
          Length = 349

 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 163/346 (47%), Gaps = 30/346 (8%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           SL+ +  F++ +    ++ F SWP+            +  A I T+  M L   PL++L 
Sbjct: 20  SLWVMAPFWSALFWGAVLAFASWPLMRLLTRVLGGRESLAASILTLGWMLLVAGPLVWLG 79

Query: 83  YYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETF 140
                 +++  + V      G+P  P WL+ +P  G     +W        ++ +  + +
Sbjct: 80  LNLADHVRDATTFVKDVQLEGLPEAPAWLAGLPLVGERLVGIWNTIDEQGAAMLVAIKPY 139

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF---P 197
           L   G   + R +++ G   L+  LSI+F+    FFFYRDG  ++  +  L E L     
Sbjct: 140 LGQVGNWLLAR-SAQIGSGILELTLSIVFV----FFFYRDGPRLATFVHGLLERLIGERA 194

Query: 198 AYWKK-----ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            Y+++     + R+V  VI +      +  IG        + +AGVP  + LG+ T +++
Sbjct: 195 DYYQELVAGTVQRVVNGVIGTAAAQALLALIG--------FLIAGVPGALVLGLATFLLS 246

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +IP G P+ +   + +L  KG+   A  L +WG + +  VD  L+P+L+     LP +  
Sbjct: 247 LIPMGPPLIWVPATAWLAWKGDYGMAIFLGIWGTLIISGVDNVLKPYLISRGGNLPLVIV 306

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMAL---IAVIWKESIMAIKENKEK 355
             G+ GG+   G +GLFIGP L+A+   + V W  S    ++N+ K
Sbjct: 307 LLGVFGGLIAFGFIGLFIGPTLLAIAYSLLVDWSAS----QQNRGK 348


>gi|229589365|ref|YP_002871484.1| hypothetical protein PFLU1848 [Pseudomonas fluorescens SBW25]
 gi|229361231|emb|CAY48095.1| putative membrane protein [Pseudomonas fluorescens SBW25]
          Length = 353

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 149/317 (47%), Gaps = 7/317 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           S + +  F++ +    ++ F SWP+            +  A I T+  M L  +PL++L 
Sbjct: 20  SFWVMAPFWSALFWGAVLAFASWPLMVLLTRWLGGRESLAAGILTLCWMLLVALPLVWLG 79

Query: 83  YYGMLEMKELVSKVVLANQHGIPV-PRWLSDIP-GGMWASELWTKHLSHPQSLKILSETF 140
           +     +++  + +      G+P  P WL  IP  G     +W        +L +  + +
Sbjct: 80  FNLADHVRDATALIKDIQVDGLPAAPTWLGSIPFVGERLVAMWDSIDQQGAALMVSIKPY 139

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           L   G   + R A   G I L+  LS++F+    FFFYRDG  ++  +  L E L     
Sbjct: 140 LGQVGNWLLARSAQIGGGI-LELTLSLVFV----FFFYRDGPRLAMFVHRLLERLIGDRA 194

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
                +V   ++    G+   A  + ++    + +AGVP  + LG++T ++++IP G P+
Sbjct: 195 GYYIELVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGVPGALVLGIVTFLLSLIPMGPPL 254

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +   + +L  KG+   A  L +WG   +  VD  L+P+L+     LP +    G+ GG+
Sbjct: 255 VWIPATAWLAWKGDYTYAVFLGVWGTFIISGVDNVLKPYLISRGGNLPLVIVLLGVFGGL 314

Query: 321 RTMGLLGLFIGPVLMAL 337
              G +GLFIGP L+A+
Sbjct: 315 IAFGFIGLFIGPTLLAV 331


>gi|330959036|gb|EGH59296.1| putative lipoprotein [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 349

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 148/312 (47%), Gaps = 11/312 (3%)

Query: 32  APVLSALIIG----FTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           AP  SAL+ G    F SWP+        +   +  A++ ++  M L   PL++L +    
Sbjct: 25  APFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAALVMSLCWMLLVAAPLVWLGFNLAD 84

Query: 88  EMKELVSKVVLANQHGIPVP-RWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            +++    +      G+P P +WL+ IP  G     LWT       +     + +L   G
Sbjct: 85  HVRDATGLIKNIQVDGLPDPPQWLAGIPLVGERLVALWTTIDQQGAAFMTTVKPYLGEVG 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              + R A   G I L+  LSI+F     FFFYRDG  ++  + SL E L     +    
Sbjct: 145 NWLLARSAQIGGGI-LELTLSIVFA----FFFYRDGPRLAAFVLSLLERLIGDRAQYYLD 199

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
           +V   ++    G+   A  + ++    + +AG+P  + LG++T + ++IP G P+ +   
Sbjct: 200 LVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALVLGILTFLFSLIPMGPPLVWLPA 259

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           + +L+ +G    A  + +WG   +  VD  L+P+L+     LP +    G+ GG+   G 
Sbjct: 260 TAWLVWQGEYGMAVFMGIWGMFVISGVDNVLKPYLISRGGNLPLVIVLLGVFGGLLAFGF 319

Query: 326 LGLFIGPVLMAL 337
           +GLFIGP L+A+
Sbjct: 320 IGLFIGPTLLAV 331


>gi|78222370|ref|YP_384117.1| hypothetical protein Gmet_1154 [Geobacter metallireducens GS-15]
 gi|78193625|gb|ABB31392.1| protein of unknown function UPF0118 [Geobacter metallireducens
           GS-15]
          Length = 358

 Score =  102 bits (255), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 156/329 (47%), Gaps = 27/329 (8%)

Query: 25  YFLKGFFAPVLSAL----IIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           Y +    +P L++L    +IG  ++PIY    +      T  A + T + +   +VP + 
Sbjct: 20  YVVYAIVSPFLNSLGWAAVIGILTFPIYRRLRAGLGARDTLAAGLMTPATVLTLVVPFVG 79

Query: 81  LFY---------YGMLE--MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           L +         YG LE    +    +V++ Q+   V  W++ I       E +T  L  
Sbjct: 80  LTFFLVQEAAVAYGFLEKIAADGGESLVMSIQNHPVVKPWIARI-------EAYTGPLGF 132

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
               + L E  +K      +         +F+ + + ++ M+I LFF YRDG  + +   
Sbjct: 133 EIDTRFLPE--MKEVAARVLNYSKEIVKNVFI-FSIKLLLMVITLFFIYRDGERVQRHAL 189

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           ++   L  A  + ++  V +V+++   G+ +  + +G + G  +W AG+PS +  G I A
Sbjct: 190 AV-IPLTEANKQILTDTVRRVLKAVMYGVFLTCLVQGALGGIGFWAAGLPSPLLFGAIMA 248

Query: 250 IMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           + A+IP  G  + +   +IYLL  G +     L +WG + +  +D  +RPF + G  KLP
Sbjct: 249 VCALIPVVGTGLIWLPAAIYLLANGEVVKGIGLIIWGFVAVSSIDNVIRPFFISGRAKLP 308

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
            L    G +GG+ + GLLG   GP+++AL
Sbjct: 309 VLVIAIGGLGGLASFGLLGAVAGPIVLAL 337


>gi|118579221|ref|YP_900471.1| hypothetical protein Ppro_0783 [Pelobacter propionicus DSM 2379]
 gi|118501931|gb|ABK98413.1| protein of unknown function UPF0118 [Pelobacter propionicus DSM
           2379]
          Length = 353

 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 160/367 (43%), Gaps = 61/367 (16%)

Query: 21  LVSLYFLKGFFAPVLSALI----IGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           L+  Y L    AP L+ ++    IG  S+P+Y   +++        AV  T  V+   I+
Sbjct: 16  LLMCYLLFTILAPFLTTMVWAGTIGAISYPLYDKLLARFRCRENLAAVAMTTLVVLALII 75

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ----- 131
           PL+ L +        L  +  LA Q+       +  +  G   S      L HPQ     
Sbjct: 76  PLVGLIF-------TLARETALAYQY-------IEGVTSGQSGS-FMESILRHPQVSPLL 120

Query: 132 -SLKILSETF-----------LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
             ++ L+ +F           LK  G+  +  +++     FL + + ++ M+I LFF YR
Sbjct: 121 DRIRPLTGSFNLELDSMLLPALK-RGLASLLNYSTGIVKNFLGFLIKLMLMLITLFFIYR 179

Query: 180 DGFSISQQLDSLGEHLFPAYW----------KKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
           DG            H    +W            I+  + +V+ +   G  +  + +G + 
Sbjct: 180 DG-----------RHFLRRFWPVVGIDEKMRATIATTITRVLDAVLYGFLLTCLVQGTLG 228

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
           G  +W+AG+PS    G++  + A IP  G  + +   +IYLL +G I     L +W A+ 
Sbjct: 229 GLGFWVAGLPSPFLFGILMTVCAPIPLIGTAMIWMPGAIYLLTQGRILAGVLLMVWSAVA 288

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           +  +D  +RP  + G  KLP     FG++GG+   GL G+  GPV++AL  V ++     
Sbjct: 289 VSGIDNIIRPLFISGRAKLPIPVVIFGVLGGLLAFGLTGVVAGPVIVALFLVFFES--YG 346

Query: 349 IKENKEK 355
            KE  E+
Sbjct: 347 EKEMAEE 353


>gi|104782634|ref|YP_609132.1| hypothetical protein PSEEN3611 [Pseudomonas entomophila L48]
 gi|95111621|emb|CAK16342.1| conserved hypothetical protein; putative membrane protein
           [Pseudomonas entomophila L48]
          Length = 350

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 151/321 (47%), Gaps = 29/321 (9%)

Query: 32  APVLSAL----IIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           AP +SAL    I+ F SWP+            T  A + T   + L  +PL++L +    
Sbjct: 25  APFISALLWGAILAFASWPLMRLLTRLLGGRETLAASLLTTVWILLVALPLVWLGFNLAD 84

Query: 88  EMKELVSKVVLANQHGIP-VPRWLSDIP--GGMWASELWTKHLSHPQSLKILSETFLKTN 144
            +++  + V      G+P  P W+  IP  GG   S  W        +L   ++ +L   
Sbjct: 85  HIRDATAFVRDVQVDGLPDAPAWVGSIPFVGGRLVS-WWESLDQQGAALLASAKPYLGQV 143

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL--------GEHLF 196
           G   + R +++ G   L+  LS++F+    FFFYRDG  ++  +  L         E+  
Sbjct: 144 GNWLLAR-SAQIGSGVLELTLSLVFV----FFFYRDGPRLAAFVHRLLHRLVGERAEYYV 198

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                 + R+V  VI +      +  IG        + +AGVP  + LG++T ++++IP 
Sbjct: 199 DLVAGTVQRVVNGVIGTAAAQALLALIG--------FLIAGVPGAIVLGLVTFMLSLIPM 250

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           G P+++   + +L+ KG+   A  L +WG   +  VD  L+P+L+     LP +    G+
Sbjct: 251 GPPLAWIPATAWLVSKGDYGMAVFLGIWGTFVISGVDNVLKPYLISRGGNLPLVIVLLGV 310

Query: 317 VGGVRTMGLLGLFIGPVLMAL 337
            GG+   G +GLFIGP L+A+
Sbjct: 311 FGGLIAFGFIGLFIGPTLLAV 331


>gi|110835489|ref|YP_694348.1| hypothetical protein ABO_2628 [Alcanivorax borkumensis SK2]
 gi|110648600|emb|CAL18076.1| membrane protein, putative [Alcanivorax borkumensis SK2]
          Length = 373

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 167/371 (45%), Gaps = 36/371 (9%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           MR++ +  +   R  +  ++ VS  F   ++ FFAP+  A  I    +P++   +++   
Sbjct: 1   MRDSGILEKLEQRAFLFSLVAVSAVFALLIQPFFAPIFWACAISVIFYPLHKRLLARWPT 60

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDI--- 113
               +A+   +  + L ++P+L +    + E   L  KV    Q G I +  ++  +   
Sbjct: 61  RRNLVALFTLMLCVVLVVIPVLAVATSFVTEGVGLFQKV----QSGEIDLASYVDKVKHA 116

Query: 114 -PGGMWASELWTKHLSH--PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
            PG    +E +   L     Q++K        T    F+ + A   G     + L++  M
Sbjct: 117 FPGVQSLAERFDVDLEKIKEQAVKAF------TGAGQFLAKRALAVGQNTFQFFLNLGLM 170

Query: 171 IIALFFFYRDGFSISQQL-------DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
           +   FF  RDG S+   L       D   E LF  +         +V R+T  G  ++AI
Sbjct: 171 LYLAFFLIRDGDSMVAMLIRALPLGDEREELLFAKF--------AEVTRATIKGNLLVAI 222

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLF 282
            +G + G  +W  G+P  +  GV+ A++++IP  GA + +  V++YL   G++  AT L 
Sbjct: 223 TQGALGGLIFWWLGIPGALLWGVVMAVLSLIPAVGAGLIWFPVALYLYAVGDMKEATVLI 282

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L+G   + +VD  LRP LVG   KLP     F  +GG+   G+ G  +GP+L AL    W
Sbjct: 283 LFGVFVIGLVDNILRPILVGRDTKLPDYVVLFSTLGGLAMFGITGFAVGPLLAALFVAFW 342

Query: 343 KESIMAIKENK 353
              I    E  
Sbjct: 343 GIFIREFNEED 353


>gi|152980908|ref|YP_001355199.1| hypothetical protein mma_3509 [Janthinobacterium sp. Marseille]
 gi|151280985|gb|ABR89395.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 359

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 108/215 (50%), Gaps = 3/215 (1%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
            G +FI + A   G    ++ +S   M+  LFF  RDG  I+ ++      L P + + +
Sbjct: 142 QGSEFITKQAISIGQNTFNFLISFTIMLYMLFFLLRDGDKIAARIRQ-AAPLNPDHKRTL 200

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISF 262
              +   IR+T  G  I+A  +G + G A+W  GV   +  GV+ A ++++P  GA + +
Sbjct: 201 FNNLTTAIRATVKGNIIVAAVQGALGGVAFWFLGVQGALLWGVLMAFLSLLPAVGAALIW 260

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             V+IY L+ G I+    L  +G + + +VD  LRP LVG    LP        VGG+  
Sbjct: 261 VPVAIYFLLTGAIWQGVTLIAFGVLVIGLVDNILRPILVGKDTALPDFVVLISTVGGMAL 320

Query: 323 MGLLGLFIGPVLMALIAVIWKE-SIMAIKENKEKI 356
           +GL G  IGPV+ AL   +W   S    K+  EK+
Sbjct: 321 LGLNGFVIGPVIAALFMTLWDIFSSGKQKQEAEKL 355


>gi|58038558|ref|YP_190522.1| hypothetical protein GOX0069 [Gluconobacter oxydans 621H]
 gi|58000972|gb|AAW59866.1| Hypothetical membrane-spanning protein [Gluconobacter oxydans 621H]
          Length = 359

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 161/334 (48%), Gaps = 18/334 (5%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F + +L A I+ FT+WPIY     ++       A+          +VPL  L   G+ ++
Sbjct: 26  FLSAILWAAILAFTTWPIYRRM--RRHVRPALAALAMMALSALFIVVPLAVLTSAGISDI 83

Query: 90  KELVSKV---VLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLKTNG 145
              +S++   +L      P P WL+ IP  G      W  H SH   +   +   L+   
Sbjct: 84  PGTISEIDTLILHVTSANPPPAWLNRIPMAGPHLVNAW-HHFSH--DVGAFATEVLR--- 137

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALF---FFYRDGFSISQQLDSLGEHLF-PAYWK 201
             +  + A     + L     +  +++ALF   F + +G ++   + +L + +  P    
Sbjct: 138 -PYAGQIAHLTLTVLLRLAGGLAELVMALFVAFFLWLNGDTLGNTITALIDRIAGPHTTP 196

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           ++  I+ + +R T  G+   A+ +G++ G    LAGVPS V L  ITA +A+ P GAP+ 
Sbjct: 197 RLINIIGRTVRGTVYGILGTALIQGVLTGIGLMLAGVPSPVLLAGITAFVAVFPIGAPLV 256

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +   +I+L +  +  +   L ++G + +   D  +RP  +    +LP+L T  G++GG+ 
Sbjct: 257 WVPAAIWLGMTHHFGHGLFLAIYGILIISGADHVIRPAFIARGAQLPYLLTVLGVLGGIV 316

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           T G +G+F+GPVL+A+   +  E   A   ++E+
Sbjct: 317 TFGGVGIFLGPVLLAVGYTLTSE-FAAGPHHRER 349


>gi|89900931|ref|YP_523402.1| hypothetical protein Rfer_2147 [Rhodoferax ferrireducens T118]
 gi|89345668|gb|ABD69871.1| protein of unknown function UPF0118 [Rhodoferax ferrireducens T118]
          Length = 357

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/186 (34%), Positives = 107/186 (57%), Gaps = 10/186 (5%)

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDS-----LGEHLFPAYWKKISRIVPKVIRSTFLGM 218
            L + F ++  FF + DG  + +QL       LG  +  AY+K +        R+   G+
Sbjct: 163 ALRLFFALLTSFFLFLDGDQMLEQLRGVLYGLLGNRVH-AYFKAVG----DTTRAVVYGL 217

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA 278
            + A+ +GL+ G  YW  GV +    G  TA++A+IP GAP  + ++  +LL+KG I   
Sbjct: 218 LLAALAQGLLAGLGYWAVGVRAPAFWGAATAVVALIPFGAPAIWGSIGAWLLLKGQISAG 277

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             L LWGA+ +  +D  +RP ++ G  K+PFL   FG++GG+   GL+GLF+GPV++A++
Sbjct: 278 VGLLLWGALAVSWIDNLVRPLVISGVAKIPFLLVLFGVLGGLVAFGLIGLFVGPVILAIL 337

Query: 339 AVIWKE 344
             +W+E
Sbjct: 338 LALWRE 343


>gi|330980752|gb|EGH78855.1| hypothetical protein PSYAP_19606 [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 348

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 151/317 (47%), Gaps = 7/317 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            L+ +  F++ ++   ++ F SWP+        +   +  A++  +  M L   PL++L 
Sbjct: 20  CLWVMAPFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAALVMCLCWMLLVAAPLVWLG 79

Query: 83  YYGMLEMKELVSKVVLANQHGIPVP-RWLSDIP-GGMWASELWTKHLSHPQSLKILSETF 140
           +     +++    +      G+P P +WL+ IP  G     LWT       +     +  
Sbjct: 80  FNLADHVRDATGLIKDIQVDGLPDPPQWLAGIPLVGERLVALWTTIDQQGAAFMATLKPH 139

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           L   G ++I   +++ G   L+  LSI+F     FFFYRDG  ++  + SL E L     
Sbjct: 140 LGQVG-NWILARSAQIGSGILELTLSIVFA----FFFYRDGPRLAAFVLSLLERLIGERA 194

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           +    +V   ++    G+   A  + ++    + +AG+P  + LG++T + ++IP G P+
Sbjct: 195 QYYLDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALVLGILTFLFSLIPMGPPL 254

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +   + +L+ +G    A  L +WG   +  VD  L+P+L+     LP +    G+ GG+
Sbjct: 255 VWLPATAWLVWQGEYGMAIFLGIWGMFIISGVDNVLKPYLISRGGNLPLVIVLLGVFGGL 314

Query: 321 RTMGLLGLFIGPVLMAL 337
              G +GLFIGP L+A+
Sbjct: 315 LAFGFIGLFIGPTLLAV 331


>gi|66045269|ref|YP_235110.1| hypothetical protein Psyr_2029 [Pseudomonas syringae pv. syringae
           B728a]
 gi|302187399|ref|ZP_07264072.1| hypothetical protein Psyrps6_13658 [Pseudomonas syringae pv.
           syringae 642]
 gi|63255976|gb|AAY37072.1| Protein of unknown function UPF0118 [Pseudomonas syringae pv.
           syringae B728a]
 gi|330973446|gb|EGH73512.1| hypothetical protein PSYAR_23439 [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 348

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 151/317 (47%), Gaps = 7/317 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            L+ +  F++ ++   ++ F SWP+        +   +  A++  +  M L   PL++L 
Sbjct: 20  CLWVMAPFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAALVMCLCWMLLVAAPLVWLG 79

Query: 83  YYGMLEMKELVSKVVLANQHGIPVP-RWLSDIP-GGMWASELWTKHLSHPQSLKILSETF 140
           +     +++    +      G+P P +WL+ IP  G     LWT       +     +  
Sbjct: 80  FNLADHVRDATGLIKDIQVDGLPDPPQWLAGIPLVGERLVALWTTIDQQGAAFMATLKPH 139

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           L   G ++I   +++ G   L+  LSI+F     FFFYRDG  ++  + SL E L     
Sbjct: 140 LGQVG-NWILARSAQIGSGILELTLSIVFA----FFFYRDGPRLAAFVLSLLERLIGERA 194

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           +    +V   ++    G+   A  + ++    + +AG+P  + LG++T + ++IP G P+
Sbjct: 195 QYYLDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALVLGILTFLFSLIPMGPPL 254

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +   + +L+ +G    A  L +WG   +  VD  L+P+L+     LP +    G+ GG+
Sbjct: 255 VWLPATAWLVWQGEYGMAIFLGIWGMFIISGVDNVLKPYLISRGGNLPLVIVLLGVFGGL 314

Query: 321 RTMGLLGLFIGPVLMAL 337
              G +GLFIGP L+A+
Sbjct: 315 LAFGFIGLFIGPTLLAV 331


>gi|330987461|gb|EGH85564.1| putative lipoprotein [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 349

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 147/312 (47%), Gaps = 11/312 (3%)

Query: 32  APVLSALIIG----FTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           AP  SALI G    F SWP+        +   +  A++  +  M L   PL++L +    
Sbjct: 25  APFWSALIWGAVLAFASWPLMRLLTRWFKGRESLAALVMCLCWMLLVAAPLVWLGFNLAD 84

Query: 88  EMKELVSKVVLANQHGIPVP-RWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            +++    +      G+P P +WL+ IP  G     LWT       +     +  L   G
Sbjct: 85  HVRDATGLIKDIQVDGLPDPPQWLAGIPLVGERLVALWTTIDQQGAAFMATLKPHLGQVG 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              + R +++ G   L+  LSI+F     FFFYRDG  ++  + SL E L     +    
Sbjct: 145 NWVLAR-SAQIGSGILELTLSIVFA----FFFYRDGPRLAAFVLSLLERLIGERAQYYLD 199

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
           +V   ++    G+   A  + ++    + +AG+P  + LG++T + ++IP G P+ +   
Sbjct: 200 LVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALVLGILTFLFSLIPMGPPLVWLPA 259

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           + +L+ +G    A  L +WG   +  VD  L+P+L+     LP +    G+ GG+   G 
Sbjct: 260 TAWLVWQGEYGMAIFLGIWGMFIISGVDNVLKPYLISRGGNLPLVIVLLGVFGGLLAFGF 319

Query: 326 LGLFIGPVLMAL 337
           +GLFIGP L+A+
Sbjct: 320 IGLFIGPTLLAV 331


>gi|289679981|ref|ZP_06500871.1| hypothetical protein PsyrpsF_42172 [Pseudomonas syringae pv.
           syringae FF5]
          Length = 348

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 151/317 (47%), Gaps = 7/317 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            L+ +  F++ ++   ++ F SWP+        +   +  A++  +  M L   PL++L 
Sbjct: 20  CLWVMAPFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAALVMCLCWMLLVAAPLVWLG 79

Query: 83  YYGMLEMKELVSKVVLANQHGIPVP-RWLSDIP-GGMWASELWTKHLSHPQSLKILSETF 140
           +     +++    +      G+P P +WL+ IP  G     LWT       +     +  
Sbjct: 80  FNLADHVRDATGLIKDIQVDGLPDPPQWLAGIPLVGERLVALWTTIDQQGAAFMATLKPH 139

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           L   G ++I   +++ G   L+  LSI+F     FFFYRDG  ++  + SL E L     
Sbjct: 140 LGQVG-NWILARSAQIGSGILELTLSIVFA----FFFYRDGPRLAAFVLSLLERLIGERA 194

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           +    +V   ++    G+   A  + ++    + +AG+P  + LG++T + ++IP G P+
Sbjct: 195 QYYLDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALVLGILTFLFSLIPMGPPL 254

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +   + +L+ +G    A  L +WG   +  VD  L+P+L+     LP +    G+ GG+
Sbjct: 255 VWLPATAWLVWQGEYGMAIFLGIWGMFIISGVDNVLKPYLISRGGNLPLVIVLLGVFGGL 314

Query: 321 RTMGLLGLFIGPVLMAL 337
              G +GLFIGP L+A+
Sbjct: 315 LAFGFIGLFIGPTLLAV 331


>gi|330875659|gb|EGH09808.1| hypothetical protein PSYMP_10962 [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 348

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 150/317 (47%), Gaps = 7/317 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            L+ +  F++ ++   ++ F SWP+        +   +  A++  +  M L   PL++L 
Sbjct: 20  CLWVMAPFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAALVMCLCWMLLVAAPLVWLG 79

Query: 83  YYGMLEMKELVSKVVLANQHGIPVP-RWLSDIP-GGMWASELWTKHLSHPQSLKILSETF 140
           +     +++    +      G+P P +WL+ IP  G     LWT       +     +  
Sbjct: 80  FNLADHVRDATGLIKDIQVDGLPDPPQWLAGIPLVGERLVALWTTIDQQGAAFMATLKPH 139

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           L   G   + R +++ G   L+  LSI+F     FFFYRDG  ++  + SL E L     
Sbjct: 140 LGQVGNWVLAR-SAQIGSGILELTLSIVFA----FFFYRDGPRLAAFVLSLLERLIGDRA 194

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           +    +V   ++    G+   A  + ++    + +AG+P  + LG++T + ++IP G P+
Sbjct: 195 QYYLDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALVLGILTFLFSLIPMGPPL 254

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +   + +L+ +G    A  L +WG   +  VD  L+P+L+     LP +    G+ GG+
Sbjct: 255 VWLPATAWLVWQGEYGMAIFLGIWGMFVISGVDNVLKPYLISRGGNLPLVIVLLGVFGGL 314

Query: 321 RTMGLLGLFIGPVLMAL 337
              G +GLFIGP L+A+
Sbjct: 315 LAFGFIGLFIGPTLLAV 331


>gi|257486360|ref|ZP_05640401.1| putative lipoprotein [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289628087|ref|ZP_06461041.1| putative lipoprotein [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289646709|ref|ZP_06478052.1| putative lipoprotein [Pseudomonas syringae pv. aesculi str. 2250]
 gi|320324915|gb|EFW80987.1| putative lipoprotein [Pseudomonas syringae pv. glycinea str. B076]
 gi|320329281|gb|EFW85278.1| putative lipoprotein [Pseudomonas syringae pv. glycinea str. race
           4]
 gi|330867463|gb|EGH02172.1| putative lipoprotein [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|331010639|gb|EGH90695.1| putative lipoprotein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 349

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 147/312 (47%), Gaps = 11/312 (3%)

Query: 32  APVLSALIIG----FTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           AP  SALI G    F SWP+        +   +  A++  +  M L   PL++L +    
Sbjct: 25  APFWSALIWGAVLAFASWPLMRLLTRWFKGRESLAALVMCLCWMLLVAAPLVWLGFNLAD 84

Query: 88  EMKELVSKVVLANQHGIPVP-RWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            +++    +      G+P P +WL+ IP  G     LWT       +     +  L   G
Sbjct: 85  HVRDATGLIKDIQVDGLPDPPQWLAGIPLVGERLVALWTTIDQQGAAFMATLKPHLGQVG 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              + R +++ G   L+  LSI+F     FFFYRDG  ++  + SL E L     +    
Sbjct: 145 NWVLAR-SAQIGSGILELTLSIVFA----FFFYRDGPRLAAFVLSLLERLIGDRAQYYLD 199

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
           +V   ++    G+   A  + ++    + +AG+P  + LG++T + ++IP G P+ +   
Sbjct: 200 LVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALVLGILTFLFSLIPMGPPLVWLPA 259

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           + +L+ +G    A  L +WG   +  VD  L+P+L+     LP +    G+ GG+   G 
Sbjct: 260 TAWLVWQGEYGMAIFLGIWGMFIISGVDNVLKPYLISRGGNLPLVIVLLGVFGGLLAFGF 319

Query: 326 LGLFIGPVLMAL 337
           +GLFIGP L+A+
Sbjct: 320 IGLFIGPTLLAV 331


>gi|330888175|gb|EGH20836.1| putative lipoprotein [Pseudomonas syringae pv. mori str. 301020]
          Length = 349

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 147/312 (47%), Gaps = 11/312 (3%)

Query: 32  APVLSALIIG----FTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           AP  SALI G    F SWP+        +   +  A++  +  M L   PL++L +    
Sbjct: 25  APFWSALIWGAVLAFASWPLMRLLTRWFKGRESLAALVMCLCWMLLVAAPLVWLGFNLAD 84

Query: 88  EMKELVSKVVLANQHGIPVP-RWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            +++    +      G+P P +WL+ IP  G     LWT       +     +  L   G
Sbjct: 85  HVRDATGLIKDIQVDGLPDPPQWLAGIPLVGERLVALWTTIDQQGAAFMATLKPHLGQVG 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              + R +++ G   L+  LSI+F     FFFYRDG  ++  + SL E L     +    
Sbjct: 145 NWVLAR-SAQIGSGILELTLSIVFA----FFFYRDGPRLAAFVLSLLERLIGDRAQYYLD 199

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
           +V   ++    G+   A  + ++    + +AG+P  + LG++T + ++IP G P+ +   
Sbjct: 200 LVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALVLGILTFLFSLIPMGPPLVWLPA 259

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           + +L+ +G    A  L +WG   +  VD  L+P+L+     LP +    G+ GG+   G 
Sbjct: 260 TAWLVWQGEYGMAIFLGIWGIFIISGVDNVLKPYLISRGGNLPLVIVLLGVFGGLLAFGF 319

Query: 326 LGLFIGPVLMAL 337
           +GLFIGP L+A+
Sbjct: 320 IGLFIGPTLLAV 331


>gi|296116208|ref|ZP_06834826.1| hypothetical protein GXY_10439 [Gluconacetobacter hansenii ATCC
           23769]
 gi|295977314|gb|EFG84074.1| hypothetical protein GXY_10439 [Gluconacetobacter hansenii ATCC
           23769]
          Length = 357

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 158/318 (49%), Gaps = 23/318 (7%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F + +L A I+ F++WPIY     ++  +    A+  TV    + +VPL  +   G++E+
Sbjct: 25  FMSALLWAAILTFSTWPIYVRL--RRHTNPLIAALGMTVMSAVVMVVPLTLVVSSGIVEL 82

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH--PQSLKILSETFLKTNGID 147
            + +   + +    I +P           +  +W +H+ H  PQ  +   +  +    ID
Sbjct: 83  PQTLPDAIDSITTVIHLP-----------SLPVWLQHIPHLGPQMNETWEKWRVDVGNID 131

Query: 148 FIPR-FASRF------GMIFLDYCLSIIFMIIAL-FFFYRDGFSISQQLDSLGEHLFPAY 199
            + R ++ R       G++ L   L+ + M + + FFF+  G ++     S+   +   Y
Sbjct: 132 QMIRPYSGRLVQWALGGIMQLASGLAHLGMALFMAFFFWLGGEALGATFVSVVRRIAGGY 191

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             +I  I+ + IR T  G+   A+ +G++ G  + +AG+ + V  G ITA ++++P GAP
Sbjct: 192 ADRILGIIGRTIRGTVYGIIGTALLQGVLTGIGFAIAGIANPVLWGGITAFISVLPIGAP 251

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +   + +L +  +      L L+G I +   D  +RP  +    +LP+L T  G++GG
Sbjct: 252 LIWIPAAFFLFVAHHPGWGVFLLLYGTIIVSGADHIMRPMFIARGAQLPYLLTVLGVLGG 311

Query: 320 VRTMGLLGLFIGPVLMAL 337
           + T G LG+F+GPVL+ +
Sbjct: 312 IWTFGGLGIFLGPVLIGV 329


>gi|71734505|ref|YP_274223.1| putative lipoprotein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71555058|gb|AAZ34269.1| lipoprotein, putative [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 349

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 147/312 (47%), Gaps = 11/312 (3%)

Query: 32  APVLSALIIG----FTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           AP  SALI G    F SWP+        +   +  A++  +  M L   PL++L +    
Sbjct: 25  APFWSALIWGAVLAFASWPLMRLLNRWFKGRESLAALVMCLCWMLLVAAPLVWLGFNLAD 84

Query: 88  EMKELVSKVVLANQHGIPVP-RWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            +++    +      G+P P +WL+ IP  G     LWT       +     +  L   G
Sbjct: 85  HVRDATGLIKDIQVDGLPDPPQWLAGIPLVGERLVALWTTIDQQGAAFMATLKPHLGQVG 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              + R +++ G   L+  LSI+F     FFFYRDG  ++  + SL E L     +    
Sbjct: 145 NWVLAR-SAQIGSGILELTLSIVFA----FFFYRDGPRLAAFVLSLLERLIGDRAQYYLD 199

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
           +V   ++    G+   A  + ++    + +AG+P  + LG++T + ++IP G P+ +   
Sbjct: 200 LVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALVLGILTFLFSLIPMGPPLVWLPA 259

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           + +L+ +G    A  L +WG   +  VD  L+P+L+     LP +    G+ GG+   G 
Sbjct: 260 TAWLVWQGEYGMAIFLGIWGMFIISGVDNVLKPYLISRGGNLPLVIVLLGVFGGLLAFGF 319

Query: 326 LGLFIGPVLMAL 337
           +GLFIGP L+A+
Sbjct: 320 IGLFIGPTLLAV 331


>gi|90423586|ref|YP_531956.1| hypothetical protein RPC_2083 [Rhodopseudomonas palustris BisB18]
 gi|90105600|gb|ABD87637.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           BisB18]
          Length = 356

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 157/336 (46%), Gaps = 14/336 (4%)

Query: 16  IMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           ++ ++++SL F   L  F+  +L  ++I     P+     +   +  T  A+I  + ++ 
Sbjct: 11  LLLVVVISLAFGWILWPFYGAILWGVVIAVVFAPLSRRLAALMPQRPTLAALITLLIIVF 70

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM--WASELWTKH--LS 128
           + I+PL  +      E   +  K+       + + R   ++   +  WA+ L  ++   S
Sbjct: 71  IVILPLTLVVASLAQEAASVYEKI---QSKDLDLVRSFQEVLNVLPSWATSLLERYGLAS 127

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                  LS   LK  G  FI   A   G    D+ L +  MI  LFF  RD  ++S+++
Sbjct: 128 LGAVQDKLSAGLLK--GSQFIATQALNVGQSTFDFVLELFIMIYLLFFLLRDEAALSRRI 185

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +    L P   K +      V+R+   G  ++A+ +G + G  +W  G+ + +   V+ 
Sbjct: 186 RT-AIPLRPEQQKALLNKFTVVVRAMIKGNMLVALLQGALGGLMFWFLGISASLLWAVLM 244

Query: 249 AIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A ++++P  GA + +  V+IYLL  G+I+    L  +GA+ + +VD  LRP LVG   K+
Sbjct: 245 AFLSLLPAVGAGLIWGPVAIYLLAIGSIWKGVLLIAYGALVIGLVDNILRPILVGKDTKM 304

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           P        +GG+   G+ G  IGPV+ AL   +W 
Sbjct: 305 PDYIVLISTLGGIEVFGINGFVIGPVIAALFIAVWD 340


>gi|326316808|ref|YP_004234480.1| hypothetical protein Acav_1999 [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323373644|gb|ADX45913.1| protein of unknown function UPF0118 [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 350

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 165/360 (45%), Gaps = 36/360 (10%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           M+ T+L      R  I  +I VSL FL     F   V   +I+     P++   +     
Sbjct: 1   MKTTLLQN----RTFIALLIAVSLAFLAILWPFHGAVFWGIILAILFAPMHRRLLRYMPR 56

Query: 58  SSTFLAVIATVSVMCLFIVPL-LFLFYYGMLEMKELVSKVVLANQ-------HGI--PVP 107
            +  LA + T+S +CL +V L + L    +++   LV + + + Q       H +   +P
Sbjct: 57  RAN-LAALCTLS-LCLLVVILPMTLITVSLVQEASLVYERIRSGQLDFTAYFHQVMQAMP 114

Query: 108 RWLSDIPGGM---WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
            W   I   +    ASEL  +      S+ + +  F+ +  IDF        G   L + 
Sbjct: 115 SWAMQILDRLNLTTASELQARL----SSVTVQATQFVGSKAIDF--------GQNTLQFV 162

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
           +S   M+  LFF  RDG +++ ++      L   + ++++     VIR+T  G   +A  
Sbjct: 163 VSFGIMLYLLFFLLRDGPALAARIRE-ATPLDEGHKRQLATKFTTVIRATVKGNIAVAAA 221

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFL 283
           +G + G A+W  G+ + V  GV+ A ++++P  GA + +  V+IYLL  G ++    L  
Sbjct: 222 QGALGGLAFWFLGIQAPVLWGVLMAFLSLLPAVGAGLIWAPVAIYLLATGAVWQGAGLAA 281

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +G   + +VD  LRP LVG   K+P        +GG+   GL G  IGPV+ AL    W 
Sbjct: 282 FGIGVIGLVDNVLRPVLVGKDTKMPDYIVLISTLGGMSLFGLTGFVIGPVIAALFIATWD 341


>gi|330951703|gb|EGH51963.1| hypothetical protein PSYCIT7_10049 [Pseudomonas syringae Cit 7]
          Length = 348

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 150/317 (47%), Gaps = 7/317 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            L+ +  F++ ++   ++ F SWP+        +   +  A++  +  M L   PL++L 
Sbjct: 20  CLWVMAPFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAALVMCLCWMLLVAAPLVWLG 79

Query: 83  YYGMLEMKELVSKVVLANQHGIPVP-RWLSDIP-GGMWASELWTKHLSHPQSLKILSETF 140
           +     +++    +      G+P P +WL+ IP  G     LWT       +     +  
Sbjct: 80  FNLADHVRDATGLIKDIQVDGLPDPPQWLAGIPLVGERLVALWTTIDQQGAAFMATLKPH 139

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           L   G   + R +++ G   L+  LSI+F     FFFYRDG  ++  + SL E L     
Sbjct: 140 LGQVGNWVLAR-SAQIGSGILELTLSIVFA----FFFYRDGPRLAAFVLSLLERLIGEGA 194

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           +    +V   ++    G+   A  + ++    + +AG+P  + LG++T + ++IP G P+
Sbjct: 195 QYYLDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALVLGILTFLFSLIPMGPPL 254

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +   + +L+ +G    A  L +WG   +  VD  L+P+L+     LP +    G+ GG+
Sbjct: 255 VWLPATAWLVWQGEYGMAIFLGIWGMFIISGVDNVLKPYLISRGGNLPLVIVLLGVFGGL 314

Query: 321 RTMGLLGLFIGPVLMAL 337
              G +GLFIGP L+A+
Sbjct: 315 LAFGFIGLFIGPTLLAV 331


>gi|66046439|ref|YP_236280.1| hypothetical protein Psyr_3210 [Pseudomonas syringae pv. syringae
           B728a]
 gi|63257146|gb|AAY38242.1| Protein of unknown function UPF0118 [Pseudomonas syringae pv.
           syringae B728a]
          Length = 354

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 107/203 (52%), Gaps = 8/203 (3%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS---LGEHLFPAYW 200
            G  ++   A  FG    D+ +S+  M+  L+FF RDG  + +++ +   LGE       
Sbjct: 142 QGSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRDGQELVRKIRTAFPLGEQ----QK 197

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +++     +V+R+T  G  ++A+ +G + G  +W+  +PS +   VI A ++++P  GA 
Sbjct: 198 RRLQLKFTRVVRATVKGNVVVAVTQGALGGFIFWMLDIPSALLWAVIMAFLSLLPAVGAG 257

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           I +  V+IY L+ G I+    L L+G + + +VD  LRP LVG   K+P        +GG
Sbjct: 258 IVWAPVAIYFLLSGMIWQGVVLGLFGVLVIGLVDNVLRPILVGKDTKMPDYLILISTLGG 317

Query: 320 VRTMGLLGLFIGPVLMALIAVIW 342
           +   GL G  IGP++ AL    W
Sbjct: 318 MSVFGLNGFVIGPLVAALFMSSW 340


>gi|28869423|ref|NP_792042.1| lipoprotein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28852664|gb|AAO55737.1| lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
 gi|331016291|gb|EGH96347.1| lipoprotein, putative [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 349

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 149/320 (46%), Gaps = 27/320 (8%)

Query: 32  APVLSALIIG----FTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           AP  SAL+ G    F SWP+        +   +  A++  +  M L   PL++L +    
Sbjct: 25  APFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAALVMCLCWMLLVAAPLVWLGFNLAD 84

Query: 88  EMKELVSKVVLANQHGIPVP-RWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            +++  + +      G+P P +WL+ IP  G     LWT       +     + +L   G
Sbjct: 85  HVRDATALIKDIQVDGLPDPPQWLAGIPLVGERLVGLWTTIDQQGAAFMTTVKPYLGEVG 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF---PAYW-- 200
              + R A   G I L+  LSI+F     FFFYRDG  ++  + SL E L      Y+  
Sbjct: 145 NWLLARSAQIGGGI-LELTLSIVFA----FFFYRDGPRLAAFVLSLLERLIGDRAQYYLD 199

Query: 201 ---KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                + R+V  VI +      +  IG        + +AG+P  + LG++T + ++IP G
Sbjct: 200 LVAGTVQRVVNGVIGTAAAQALLALIG--------FLIAGIPGALVLGILTFLFSLIPMG 251

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P+ +   + +L+ +G    A  L +WG   +  VD  L+P+L+     LP +    G+ 
Sbjct: 252 PPLVWLPATAWLVWQGEYGMAIFLGIWGMFVISGVDNVLKPYLISRGGNLPLVIVLLGVF 311

Query: 318 GGVRTMGLLGLFIGPVLMAL 337
           GG+   G +GLFIGP L+A+
Sbjct: 312 GGLLAFGFIGLFIGPTLLAV 331


>gi|121603896|ref|YP_981225.1| hypothetical protein Pnap_0987 [Polaromonas naphthalenivorans CJ2]
 gi|120592865|gb|ABM36304.1| protein of unknown function UPF0118 [Polaromonas naphthalenivorans
           CJ2]
          Length = 394

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 141/307 (45%), Gaps = 19/307 (6%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-I 104
           PI+  F+SK  +  T  A+     ++ L I+P+  +      E   +  +V    Q G +
Sbjct: 82  PIFLRFMSKLSQRRTLSALFTVSIILVLVILPVGLISALLTQEAAGVYQRV----QSGDL 137

Query: 105 PVPRWLSDIPGGM--WASELWTKHLSHPQSLKILSETFLK--TNGIDFIPRFASRFGMIF 160
              R+   I   +  W + L  +  S   +L ++ E      T G  FI   A   G   
Sbjct: 138 SFGRYFQQIYDALPAWITSLLNR--SGLNNLGLIQERVSDSLTKGSQFIATQALNIGQNA 195

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDS---LGEHLFPAYWKKISRIVPKVIRSTFLG 217
            D+ +S   M+  +FFF RDG ++S+++     L E +    + K +     VIR+T  G
Sbjct: 196 FDFFVSFFIMLYLMFFFLRDGAALSRRIKQAIPLEEDIKRNLFSKFT----TVIRATVRG 251

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIF 276
              +A+ +G + G  +W   + + V  G + A ++++P  GA + +  V+IY L  G I+
Sbjct: 252 NIAVAVMQGALGGLIFWFLNIHAPVLWGTLMAFLSLLPAVGAALVWIPVAIYFLATGAIW 311

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
               L  +G + + +VD  LRP LVG   K+P        +GG+   GL G  IGPV+ A
Sbjct: 312 QGVVLIAFGVLVIGLVDNVLRPVLVGKDTKMPDYVVLVSTIGGMSLFGLNGFVIGPVIAA 371

Query: 337 LIAVIWK 343
           +    W 
Sbjct: 372 MFMAAWD 378


>gi|330972921|gb|EGH72987.1| hypothetical protein PSYAR_20762 [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 354

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 106/203 (52%), Gaps = 8/203 (3%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS---LGEHLFPAYW 200
            G  ++   A  FG    D+ +S+  M+  L+FF RDG  + +++ +   LGE       
Sbjct: 142 QGSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRDGQELVRKIRTAFPLGEQQKRRLQ 201

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
            K +R+V    R+T  G  ++A+ +G + G  +W+  +PS +   VI A ++++P  GA 
Sbjct: 202 LKFTRVV----RATVKGNVVVAVTQGALGGFIFWVLDIPSALLWAVIMAFLSLLPAVGAG 257

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           I +  V+IY L+ G I+    L L+G + + +VD  LRP LVG   K+P        +GG
Sbjct: 258 IVWAPVAIYFLLSGMIWQGVVLGLFGVLVIGLVDNVLRPILVGKDTKMPDYLILISTLGG 317

Query: 320 VRTMGLLGLFIGPVLMALIAVIW 342
           +   GL G  IGP++ AL    W
Sbjct: 318 MSVFGLNGFVIGPLVAALFMSSW 340


>gi|307320954|ref|ZP_07600362.1| protein of unknown function UPF0118 [Sinorhizobium meliloti AK83]
 gi|306893438|gb|EFN24216.1| protein of unknown function UPF0118 [Sinorhizobium meliloti AK83]
          Length = 371

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 163/333 (48%), Gaps = 8/333 (2%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F + +L A +I F++WP Y  F           A   TV V+ + + PL  L       +
Sbjct: 31  FLSAILWAAVICFSTWPAYRLFERAVGGYRALAAAAMTVLVVVVIVAPLALLATTLADNI 90

Query: 90  KELVSKVVLANQHGIPVP-RWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
             LV+ V    + G P P  W+ ++P  G   +  W + L+H      +    +     D
Sbjct: 91  SSLVAGVTHVLEQGPPAPPDWVRELPIAGEGLATYW-EGLAHNAPAFTIELKKVIGPFAD 149

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
                 + FG   L+  LSI       FF +  G  ++     + E +  A  +++  +V
Sbjct: 150 VALIGGTLFGAGLLELALSIFIG----FFLFLHGRRMTALTRQIAERVAGARARRLLSVV 205

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
              +     G+   A+ +GL+ G  +W+AGVP  + LG +T +++ +P G P  +  V++
Sbjct: 206 GVTVTGVVYGLIGTALAQGLLAGVGFWIAGVPQALLLGCLTFVLSFVPAGPPFVWGPVAL 265

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +L ++ +++    + +WG + +  +D  LRP+L+G    LP L   FGL+GGV   GL+G
Sbjct: 266 WLFMQESVWWGIFVAIWGLLLVSSIDNFLRPYLLGRNTNLPVLLGLFGLIGGVLAFGLIG 325

Query: 328 LFIGPVLMALIAVIWKESIMA-IKENKEKISSN 359
           LF+GP L+A+   +++E I A ++E ++  SS+
Sbjct: 326 LFLGPTLLAVAHSLFREWIAAELEERRQPPSSS 358


>gi|330428771|gb|AEC20105.1| hypothetical protein PT7_1565 [Pusillimonas sp. T7-7]
          Length = 353

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 107/216 (49%), Gaps = 8/216 (3%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP---AYW 200
            G  ++   A   G     + +S+  M+  LFF  RDG S+++      +HL P    + 
Sbjct: 142 EGSKYLASQAVNVGQNTFQFLISMGIMLYLLFFLLRDGGSLARH----SKHLIPLSEEHK 197

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           + + R    V+R+T  G  ++A  +G + G  +W  G+   +  GV+ A ++++P  GA 
Sbjct: 198 QHLFRKFATVVRATVKGNIVVAATQGTLGGLMFWFLGIQGALLWGVLMAFLSLLPAVGAA 257

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           I +  V++Y L+ G ++    L L+G + + +VD  LRP LVG   K+P        +GG
Sbjct: 258 IIWVPVAVYFLVTGAVWQGVTLTLFGVLVIGLVDNILRPLLVGKDTKIPDYVILVSTLGG 317

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +   GL G  IGP+  AL    W     AI+ N E+
Sbjct: 318 LAVFGLNGFVIGPLFAALFIACWDLFPSAIRMNHEE 353


>gi|189426238|ref|YP_001953415.1| hypothetical protein Glov_3189 [Geobacter lovleyi SZ]
 gi|189422497|gb|ACD96895.1| protein of unknown function UPF0118 [Geobacter lovleyi SZ]
          Length = 361

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 174/347 (50%), Gaps = 17/347 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M  T+L    +   +++ + L+   FL  F AP+  ALIIG  ++P Y   +   ++   
Sbjct: 1   MDRTLLKTLLVFTLILLGVYLLGKIFLP-FLAPIAWALIIGIITYPAYLRLLDLLKQREA 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           + A + T++VM +F++P++ L      E+ +   + V ++       + L       WA 
Sbjct: 60  WSAALMTLAVMLVFVLPVVSLVSVLAQEVAQ-AYQFVSSSVSSGGAEKLLQQ-----WAG 113

Query: 121 E-LWTKHLSHPQSLK-----ILSETFLKTN--GIDFIPRFASRFGMIFLDYCLSIIFMII 172
           +  W  ++   ++L       L+++ +  +  G+  +  F +        + + ++FM+ 
Sbjct: 114 QPQWAPYVDKFKTLVGGSSFSLTDSVMANSKEGLAKLLGFLTSLLANSFSFLMDMVFMLF 173

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
            LFF Y DG  +   L+ +   L  +  +K+S++V  V+     G  +  + +G++ G+A
Sbjct: 174 ILFFVYLDGERVLLWLNRM-LPLEESLQEKLSQVVRDVLSGFIFGTLLTCLVQGILAGAA 232

Query: 233 YWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
           Y L GVPS + L V+TAI  +IP  G  + +   ++YL ++G+   A  + LWG + + +
Sbjct: 233 YLLFGVPSPLLLAVLTAIGGLIPVVGTALIWLPAALYLYLQGSAVKAVIMILWGFLAVGM 292

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
            D  ++P  +   + LP LP   G +GG+   G+LG   GP+L+A++
Sbjct: 293 SDNVVKPIFMSSRVTLPILPIMIGALGGLAAFGVLGAIFGPLLLAIL 339


>gi|330965376|gb|EGH65636.1| lipoprotein [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 349

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 149/320 (46%), Gaps = 27/320 (8%)

Query: 32  APVLSALIIG----FTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           AP  SAL+ G    F SWP+        +   +  A++  +  M L   PL++L +    
Sbjct: 25  APFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAALVMCLCWMLLVAAPLVWLGFNLAD 84

Query: 88  EMKELVSKVVLANQHGIPVP-RWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            +++  + +      G+P P +WL+ IP  G     +WT       +     + +L   G
Sbjct: 85  HVRDATALIKDIQVDGLPDPPQWLAGIPLVGERLVGVWTTIDQQGAAFMTTVKPYLGEVG 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF---PAYW-- 200
              + R A   G I L+  LSI+F     FFFYRDG  ++  + SL E L      Y+  
Sbjct: 145 NWLLARSAQIGGGI-LELTLSIVFA----FFFYRDGPRLAAFVLSLLERLIGDRAQYYLD 199

Query: 201 ---KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                + R+V  VI +      +  IG        + +AG+P  + LG++T + ++IP G
Sbjct: 200 LVAGTVQRVVNGVIGTAAAQALLALIG--------FLIAGIPGALVLGILTFLFSLIPMG 251

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P+ +   + +L+ +G    A  L +WG   +  VD  L+P+L+     LP +    G+ 
Sbjct: 252 PPLVWLPATAWLVWQGEYGMAIFLGIWGMFVISGVDNVLKPYLISRGGNLPLVIVLLGVF 311

Query: 318 GGVRTMGLLGLFIGPVLMAL 337
           GG+   G +GLFIGP L+A+
Sbjct: 312 GGLLAFGFIGLFIGPTLLAV 331


>gi|77459939|ref|YP_349446.1| hypothetical protein Pfl01_3717 [Pseudomonas fluorescens Pf0-1]
 gi|77383942|gb|ABA75455.1| putative membrane protein [Pseudomonas fluorescens Pf0-1]
          Length = 353

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 117/232 (50%), Gaps = 14/232 (6%)

Query: 132 SLKILSETFLKT--NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            L  L E  +K    G   +   A  FG    ++ +S   M+  LFFF RDG  +++++ 
Sbjct: 128 ELNALREKIVKAAMQGSQVLASQAFSFGQGTFEFVVSFFIMLYLLFFFLRDGAELARKVR 187

Query: 190 S---LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           +   L EH    + +++     +V+R+T  G  ++AI +G + G+ +W   +PS +   V
Sbjct: 188 TAIPLEEH----HKRRLQLKFNRVVRATVKGNLLVAITQGALGGAIFWFLDIPSALLWAV 243

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           + A ++++P  GA I +  V++Y L+ G I+    L L+G   + +VD  LRP LVG   
Sbjct: 244 LMAFLSLLPAVGAGIVWVPVAVYFLLSGMIWQGVVLGLFGVFVIGLVDNLLRPILVGKDT 303

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           ++P        +GG+   GL G  IGP++ AL    W   I    E+K K+ 
Sbjct: 304 RMPDYMILISTLGGLAVFGLNGFVIGPLIAALFMSSWALFI----ESKPKVQ 351


>gi|37522328|ref|NP_925705.1| hypothetical protein glr2759 [Gloeobacter violaceus PCC 7421]
 gi|35213328|dbj|BAC90700.1| glr2759 [Gloeobacter violaceus PCC 7421]
          Length = 368

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 143/312 (45%), Gaps = 20/312 (6%)

Query: 44  SWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF---------YYGMLEMKELVS 94
           SWP+Y       ++ S + A+  T+ V    I+P++ +           Y  ++    +S
Sbjct: 41  SWPLYQKVYEILDKRSIYAALAMTLLVSLSVILPVVLIAASLASDAVELYRTVQADGSMS 100

Query: 95  KVVLANQHGIPVPRWLSDIP--GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
              L   +   + R ++ +P  GG   +  W + +   Q  + L       +G   I  +
Sbjct: 101 LAALKESYA-ALGRTVARVPVVGGQLQN--WLREVDLVQVQQWLR------SGAGRILTW 151

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
            + FG       +++   I  LFF Y  G  + +Q     E L       +   +   +R
Sbjct: 152 LAGFGQAISGALVTLGLTIFTLFFLYLSGLDLVRQTREALEKLGGEPLVSLLDPLGATVR 211

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
           +  LG+ +    +GL+ G   W+AG+   + LGV+ A+++++    P+ +    I+L   
Sbjct: 212 AVVLGLVLTGAAQGLLAGLGLWVAGIEIALILGVLAALLSILQIPTPVVWFPCVIWLAAN 271

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
           G  + A  LFLWGA+ +  +D  L+P  +     +P L  FFG++GG+   G +G+ +GP
Sbjct: 272 GQTWQAVALFLWGALVVGTIDNFLKPLFISQGTGIPILLVFFGVLGGLLAFGTIGIVVGP 331

Query: 333 VLMALIAVIWKE 344
           V +AL+ V+W+ 
Sbjct: 332 VSLALLLVLWRR 343


>gi|307315631|ref|ZP_07595168.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
 gi|306898698|gb|EFN29361.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
          Length = 371

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 161/333 (48%), Gaps = 8/333 (2%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F +  L A +I F++WP Y  F           A   TV V+ + + PL  L       +
Sbjct: 31  FLSATLGAAVICFSTWPAYRLFERAVGGYRALAAAAMTVLVVVVIVAPLALLATTLADNI 90

Query: 90  KELVSKVVLANQHGIPVP-RWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
             LV+ V    + G P P  W+  +P  G   +  W + L+H      +    +     D
Sbjct: 91  SSLVAGVTNVLEQGPPAPPDWVRGLPIAGEGLATYW-EGLAHNAPAFTIELKKVIGPFAD 149

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
                 + FG   L+  LSI       FF +  G  ++     + E +  A  +++  +V
Sbjct: 150 VALIGGTLFGAGLLELALSIFIG----FFLFLHGRRMTALTRQIAERVAGARARRLLSVV 205

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
              +     G+   A+ +GL+ G  +W+AGVP  + LG +T +++ +P G P  +  V++
Sbjct: 206 GVTVTGVVYGLIGTALAQGLLAGVGFWIAGVPQALLLGCLTFVLSFVPAGPPFVWGPVAL 265

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +L ++ +++    + +WG + +  +D  LRP+L+G    LP L   FGL+GGV   GL+G
Sbjct: 266 WLFMQESVWWGIFVAIWGLLLVSSIDNFLRPYLLGRNTNLPVLLGLFGLIGGVLAFGLIG 325

Query: 328 LFIGPVLMALIAVIWKESIMA-IKENKEKISSN 359
           LF+GP L+A+   +++E I A ++E ++  SS+
Sbjct: 326 LFLGPTLLAVAHSLFREWIAAELEERRQPPSSS 358


>gi|330981355|gb|EGH79458.1| hypothetical protein PSYAP_22717 [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 354

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 105/203 (51%), Gaps = 8/203 (3%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS---LGEHLFPAYW 200
            G  ++   A  FG    D+ +S+  M+  L+FF RDG  + +++ +   LGE       
Sbjct: 142 QGSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRDGQELVRKIRTAFPLGEQQKRRLQ 201

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
            K +R+V    R+T  G  ++A+ +G + G  +W+  +PS +   VI A ++++P  GA 
Sbjct: 202 LKFTRVV----RATVKGNVVVAVTQGALGGFIFWVLDIPSALLWAVIMAFLSLLPAVGAG 257

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           I +  V++Y L+ G I+    L L+G   + +VD  LRP LVG   K+P        +GG
Sbjct: 258 IVWAPVAVYFLLSGMIWQGVVLGLFGVFVIGLVDNVLRPILVGKDTKMPDYLILISTLGG 317

Query: 320 VRTMGLLGLFIGPVLMALIAVIW 342
           +   GL G  IGP++ AL    W
Sbjct: 318 MSVFGLNGFVIGPLVAALFMSSW 340


>gi|213968162|ref|ZP_03396307.1| lipoprotein [Pseudomonas syringae pv. tomato T1]
 gi|301383833|ref|ZP_07232251.1| lipoprotein, putative [Pseudomonas syringae pv. tomato Max13]
 gi|302133398|ref|ZP_07259388.1| lipoprotein, putative [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213927142|gb|EEB60692.1| lipoprotein [Pseudomonas syringae pv. tomato T1]
          Length = 349

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 148/320 (46%), Gaps = 27/320 (8%)

Query: 32  APVLSALIIG----FTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           AP  SAL+ G    F SWP+        +   +  A++  +  M L   PL++L +    
Sbjct: 25  APFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAALVMCLCWMLLVAAPLVWLGFNLAD 84

Query: 88  EMKELVSKVVLANQHGIPVP-RWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            +++  + +      G+P P +WL+ IP  G      WT       +     + +L   G
Sbjct: 85  HVRDATALIKDIQVDGLPDPPQWLAGIPLVGERLVGFWTTIDQQGAAFMTTVKPYLGEVG 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF---PAYW-- 200
              + R A   G I L+  LSI+F     FFFYRDG  ++  + SL E L      Y+  
Sbjct: 145 NWLLARSAQIGGGI-LELTLSIVFA----FFFYRDGPRLAAFVLSLLERLIGDRAQYYLD 199

Query: 201 ---KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                + R+V  VI +      +  IG        + +AG+P  + LG++T + ++IP G
Sbjct: 200 LVAGTVQRVVNGVIGTAAAQALLALIG--------FLIAGIPGALVLGILTFLFSLIPMG 251

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P+ +   + +L+ +G    A  L +WG   +  VD  L+P+L+     LP +    G+ 
Sbjct: 252 PPLVWLPATAWLVWQGEYGMAIFLGIWGMFVISGVDNVLKPYLISRGGNLPLVIVLLGVF 311

Query: 318 GGVRTMGLLGLFIGPVLMAL 337
           GG+   G +GLFIGP L+A+
Sbjct: 312 GGLLAFGFIGLFIGPTLLAV 331


>gi|148546943|ref|YP_001267045.1| hypothetical protein Pput_1705 [Pseudomonas putida F1]
 gi|148511001|gb|ABQ77861.1| protein of unknown function UPF0118 [Pseudomonas putida F1]
          Length = 349

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 148/320 (46%), Gaps = 27/320 (8%)

Query: 32  APVLSAL----IIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           AP +SAL    I+ F SWP+            T  A + T++ + +  +PL++L +    
Sbjct: 25  APFISALLWGAILAFASWPLMRFLTRLLGGRETLAAGLLTMAWILIVALPLVWLGFNLAD 84

Query: 88  EMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            +++  + V      G+P  P WL  IP  G      W        +L    + +    G
Sbjct: 85  HIRDATAFVRDVQVDGLPDAPAWLGGIPFVGERLVNGWQSLDQQGAALLTSIKPYFGQVG 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS--------QQLDSLGEHLFP 197
              + R +++ G   L+  LS++F+    FFFYRDG  ++        + +    E+   
Sbjct: 145 NWLLAR-SAQIGSGVLELTLSLVFV----FFFYRDGPRLAAFVLRLLHRLVGERAEYYLD 199

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                + R+V  VI +      +  IG        + +AGVP  + LG++T ++++IP G
Sbjct: 200 LVAATVQRVVNGVIGTAAAQALLALIG--------FLIAGVPGAIVLGLVTFMLSLIPMG 251

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P+++   + +L+ KG    A  L +WG   +  VD  L+P+L+     LP +    G+ 
Sbjct: 252 PPLAWIPATAWLVWKGEYGMAVFLGVWGTFVISGVDNVLKPYLISRGGNLPLVIVLLGVF 311

Query: 318 GGVRTMGLLGLFIGPVLMAL 337
           GG+   G +GLFIGP L+A+
Sbjct: 312 GGLLAFGFIGLFIGPTLLAV 331


>gi|237797235|ref|ZP_04585696.1| hypothetical protein POR16_00180 [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331020085|gb|EGI00142.1| hypothetical protein POR16_00180 [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 354

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 105/203 (51%), Gaps = 8/203 (3%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS---LGEHLFPAYW 200
            G  ++   A  FG    D+ +S+  M+  L+FF RDG  + +++ +   LGE       
Sbjct: 142 QGSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRDGQELVRKIRTAFPLGEQQKRRLQ 201

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
            K +R+V    R+T  G  ++A+ +G++ G  +W   +PS +   VI A ++++P  GA 
Sbjct: 202 LKFTRVV----RATVKGNVVVAVTQGMLGGFIFWALDIPSALLWAVIMAFLSLLPAVGAG 257

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           I +  V++Y L+ G I+    L L+G   + +VD  LRP LVG   K+P        +GG
Sbjct: 258 IVWAPVAVYFLLSGMIWQGVILGLFGVFVIGLVDNVLRPVLVGKDTKMPDYLILISTLGG 317

Query: 320 VRTMGLLGLFIGPVLMALIAVIW 342
           +   GL G  IGP++ AL    W
Sbjct: 318 MSVFGLNGFVIGPLIAALFISSW 340


>gi|16262687|ref|NP_435480.1| hypothetical protein SMa0447 [Sinorhizobium meliloti 1021]
 gi|14523310|gb|AAK64892.1| conserved hypothetical protein [Sinorhizobium meliloti 1021]
          Length = 373

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 162/333 (48%), Gaps = 8/333 (2%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F + +L A +I F++WP Y  F           A   TV V+ + + PL  L       +
Sbjct: 33  FLSAILWAAVICFSTWPAYRLFERAVGGYRALAAAAMTVLVVVVIVAPLALLATTLADNI 92

Query: 90  KELVSKVVLANQHGIPVP-RWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
             LV+ V    + G P P  W+  +P  G   +  W + L+H      +    +     D
Sbjct: 93  SSLVAGVTHVLEQGPPAPPDWVRGLPIAGEGLATYW-EGLAHNAPAFTIELKKVIGPFAD 151

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
                 + FG   L+  LSI       FF +  G  ++     + E +  A  +++  +V
Sbjct: 152 VALIGGTLFGAGLLELALSIFIG----FFLFLHGRRMTALTRQIAERVAGARARRLLSVV 207

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
              +     G+   A+ +GL+ G  +W+AGVP  + LG +T +++ +P G P  +  V++
Sbjct: 208 GVTVTGVVYGLIGTALAQGLLAGVGFWIAGVPQALLLGCLTFVLSFVPAGPPFVWGPVAL 267

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +L ++ +++    + +WG + +  +D  LRP+L+G    LP L   FGL+GGV   GL+G
Sbjct: 268 WLFMQESVWWGIFVAIWGLLLVSSIDNFLRPYLLGRNTNLPVLLGLFGLIGGVLAFGLIG 327

Query: 328 LFIGPVLMALIAVIWKESIMA-IKENKEKISSN 359
           LF+GP L+A+   +++E I A ++E ++  SS+
Sbjct: 328 LFLGPTLLAVAHSLFREWIAAELEERRQPPSSS 360


>gi|330944584|gb|EGH46538.1| hypothetical protein PSYPI_31203 [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 354

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 106/203 (52%), Gaps = 8/203 (3%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS---LGEHLFPAYW 200
            G  ++   A  FG    D+ +S+  M+  L+FF RDG  + +++ +   LGE       
Sbjct: 142 QGSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRDGQELVRKIRTAFPLGEQ----QK 197

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +++     +V+R+T  G  ++A+ +G + G  +W+  +PS +   VI A ++++P  GA 
Sbjct: 198 RRLQLKFTRVVRATVKGNVVVAVTQGALGGFIFWVLDIPSALLWAVIMAFLSLLPAVGAG 257

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           I +  V++Y L+ G I+    L L+G   + +VD  LRP LVG   K+P        +GG
Sbjct: 258 IVWAPVAVYFLLSGMIWQGVVLGLFGVFVIGLVDNVLRPILVGKDTKMPDYLILISTLGG 317

Query: 320 VRTMGLLGLFIGPVLMALIAVIW 342
           +   GL G  IGP++ AL    W
Sbjct: 318 MSVFGLNGFVIGPLVAALFMSSW 340


>gi|71737762|ref|YP_275294.1| hypothetical protein PSPPH_3124 [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257485456|ref|ZP_05639497.1| hypothetical protein PsyrptA_19480 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|71558315|gb|AAZ37526.1| membrane protein, putative [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|320323803|gb|EFW79887.1| hypothetical protein PsgB076_15967 [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327942|gb|EFW83947.1| hypothetical protein PsgRace4_21198 [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330881164|gb|EGH15313.1| hypothetical protein Pgy4_19969 [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330889643|gb|EGH22304.1| hypothetical protein PSYMO_12697 [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330989763|gb|EGH87866.1| hypothetical protein PLA107_32388 [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331010711|gb|EGH90767.1| hypothetical protein PSYTB_13666 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 354

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 159/351 (45%), Gaps = 20/351 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           M ET L      + +IM ++LV++ F   L  F+  V  A+I+G    P+      K   
Sbjct: 1   MNETTLQ----YKTLIMLLVLVTIAFIWILLPFYGAVFWAVILGIIFAPVQRRLQIKFNW 56

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
           S    ++      + + I+P++ +    + E   L   V       + +  +L++    +
Sbjct: 57  SRNLTSLCTLTICLVIAILPVIVISALLVQEGTTLYKNV---ETGQLDIAGYLAEFKDLL 113

Query: 118 WASELWTKHLSHPQSLKILSETFLK--TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
             S            L+ L +   K    G  ++   A  FG    D+ +S+  M+  L+
Sbjct: 114 PHSIQALLDRLGMGDLEGLRDKITKGAMQGSQYLATQAFSFGQGTFDFVVSVFIMLYLLY 173

Query: 176 FFYRDGFSISQQLDS---LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
           FF RDG  + +++ +   LGE        K +R+V    R+T  G  ++A+ +G + G  
Sbjct: 174 FFLRDGQELVRKIRTAFPLGEQQKRRLQLKFTRVV----RATVKGNVVVAVTQGALGGFI 229

Query: 233 YWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
           +W   +PS +   VI A ++++P  GA I +  V++Y L+ G I+    L L+G   + +
Sbjct: 230 FWALDIPSALLWAVIMAFLSLLPAVGAGIVWAPVAVYFLLSGMIWQGVVLGLFGVFVIGL 289

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           VD  LRP LVG   K+P        +GG+   GL G  IGP++ AL    W
Sbjct: 290 VDNVLRPILVGKDTKMPDYLILISTLGGMSVFGLNGFVIGPLVAALFISSW 340


>gi|298487561|ref|ZP_07005603.1| membrane protein, putative [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298157945|gb|EFH99023.1| membrane protein, putative [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 354

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 159/351 (45%), Gaps = 20/351 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           M ET L      + +IM ++LV++ F   L  F+  V  A+I+G    P+      K   
Sbjct: 1   MNETTLQ----YKTLIMLLVLVTIAFIWILLPFYGAVFWAVILGIIFAPVQRRLQIKFNW 56

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
           S    ++      + + I+P++ +    + E   L   V       + +  +L++    +
Sbjct: 57  SRNLTSLCTLTICLVIAILPVIVISALLVQEGTTLYKNV---ESGQLDIAGYLAEFKDLL 113

Query: 118 WASELWTKHLSHPQSLKILSETFLK--TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
             S            L+ L +   K    G  ++   A  FG    D+ +S+  M+  L+
Sbjct: 114 PHSIQALLDRLGMGDLEGLRDKITKGAMQGSQYLATQAFSFGQGTFDFVVSVFIMLYLLY 173

Query: 176 FFYRDGFSISQQLDS---LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
           FF RDG  + +++ +   LGE        K +R+V    R+T  G  ++A+ +G + G  
Sbjct: 174 FFLRDGQELVRKIRTAFPLGEQQKRRLQLKFTRVV----RATVKGNVVVAVTQGALGGFI 229

Query: 233 YWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
           +W   +PS +   VI A ++++P  GA I +  V++Y L+ G I+    L L+G   + +
Sbjct: 230 FWALDIPSALLWAVIMAFLSLLPAVGAGIVWAPVAVYFLLSGMIWQGVVLGLFGVFVIGL 289

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           VD  LRP LVG   K+P        +GG+   GL G  IGP++ AL    W
Sbjct: 290 VDNVLRPILVGKDTKMPDYLILISTLGGMSVFGLNGFVIGPLVAALFISSW 340


>gi|302185038|ref|ZP_07261711.1| hypothetical protein Psyrps6_01802 [Pseudomonas syringae pv.
           syringae 642]
          Length = 354

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 105/203 (51%), Gaps = 8/203 (3%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS---LGEHLFPAYW 200
            G  ++   A  FG    D+ +S+  M+  L+FF RDG  + +++ +   LGE       
Sbjct: 142 QGSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRDGQELVRKIRTAFPLGEQQKRRLQ 201

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
            K +R+V    R+T  G  ++A+ +G + G  +W+  +PS +   VI A ++++P  GA 
Sbjct: 202 LKFTRVV----RATVKGNVVVAVTQGALGGFIFWVLDIPSALLWAVIMAFLSLLPAVGAG 257

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           I +  V++Y L+ G I+    L L+G   + +VD  LRP LVG   K+P        +GG
Sbjct: 258 IVWAPVAVYFLLSGMIWQGVVLGLFGVFVIGLVDNVLRPILVGKDTKMPDYLILISTLGG 317

Query: 320 VRTMGLLGLFIGPVLMALIAVIW 342
           +   GL G  IGP++ AL    W
Sbjct: 318 MSVFGLNGFVIGPLVAALFMSSW 340


>gi|330954547|gb|EGH54807.1| hypothetical protein PSYCIT7_24977 [Pseudomonas syringae Cit 7]
          Length = 356

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 105/203 (51%), Gaps = 8/203 (3%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS---LGEHLFPAYW 200
            G  ++   A  FG    D+ +S+  M+  L+FF RDG  + +++ +   LGE       
Sbjct: 142 QGSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRDGQELVRKIRTAFPLGEQQKRRLQ 201

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
            K +R+V    R+T  G  ++A+ +G + G  +W+  +PS +   VI A ++++P  GA 
Sbjct: 202 LKFTRVV----RATVKGNVVVAVTQGALGGFIFWVLDIPSALLWAVIMAFLSLLPAVGAG 257

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           I +  V++Y L+ G I+    L L+G   + +VD  LRP LVG   K+P        +GG
Sbjct: 258 IVWAPVAVYFLLSGMIWQGVVLGLFGVFVIGLVDNVLRPILVGKDTKMPDYLILISTLGG 317

Query: 320 VRTMGLLGLFIGPVLMALIAVIW 342
           +   GL G  IGP++ AL    W
Sbjct: 318 MSVFGLNGFVIGPLVAALFISSW 340


>gi|313497990|gb|ADR59356.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1]
          Length = 350

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 148/320 (46%), Gaps = 27/320 (8%)

Query: 32  APVLSAL----IIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           AP +SAL    I+ F SWP+            T  A + T++ + +  +PL++L +    
Sbjct: 25  APFISALLWGAILAFASWPLMRFLTRLLGGRETLAAGLLTMAWILIVALPLVWLGFNLAD 84

Query: 88  EMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            +++  + V      G+P  P WL  IP  G      W        +L    + +    G
Sbjct: 85  HIRDATAFVRDVQVDGLPDAPAWLGGIPFVGERLVNGWQSLDQQGAALLASIKPYFGQVG 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS--------QQLDSLGEHLFP 197
              + R +++ G   L+  LS++F+    FFFYRDG  ++        + +    E+   
Sbjct: 145 NWLLAR-SAQIGSGVLELTLSLVFV----FFFYRDGPRLAAFVLRLLHRLVGERAEYYLD 199

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                + R+V  VI +      +  IG        + +AGVP  + LG++T ++++IP G
Sbjct: 200 LVAATVQRVVNGVIGTAAAQALLALIG--------FLIAGVPGAIVLGLVTFMLSLIPMG 251

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P+++   + +L+ KG    A  L +WG   +  VD  L+P+L+     LP +    G+ 
Sbjct: 252 PPLAWIPATAWLVWKGEYGMAVFLGVWGTFVISGVDNVLKPYLISRGGNLPLVIVLLGVF 311

Query: 318 GGVRTMGLLGLFIGPVLMAL 337
           GG+   G +GLFIGP L+A+
Sbjct: 312 GGLLAFGFIGLFIGPTLLAV 331


>gi|289625440|ref|ZP_06458394.1| hypothetical protein PsyrpaN_09999 [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649278|ref|ZP_06480621.1| hypothetical protein Psyrpa2_16276 [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330866824|gb|EGH01533.1| hypothetical protein PSYAE_06090 [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 354

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 159/351 (45%), Gaps = 20/351 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           M ET L      + +IM ++LV++ F   L  F+  V  A+I+G    P+      K   
Sbjct: 1   MNETTLQ----YKTLIMLLVLVTIAFIWILLPFYGAVFWAVILGIIFAPVQRRLQIKFNW 56

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
           S    ++      + + I+P++ +    + E   L   V       + +  +L++    +
Sbjct: 57  SRNLTSLCTLTICLVIAILPVIVISALLVQEGTTLYKNV---ETGQLDIAGYLAEFKDLL 113

Query: 118 WASELWTKHLSHPQSLKILSETFLK--TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
             S            L+ L +   K    G  ++   A  FG    D+ +S+  M+  L+
Sbjct: 114 PHSIQALLDRLGMGDLEGLRDKITKGAMQGSQYLATQAFSFGQGTFDFVVSVFIMLYLLY 173

Query: 176 FFYRDGFSISQQLDS---LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
           FF RDG  + +++ +   LGE        K +R+V    R+T  G  ++A+ +G + G  
Sbjct: 174 FFLRDGQELVRKIRTAFPLGEQQKRRLQLKFTRVV----RATVKGNVVVAVTQGALGGFI 229

Query: 233 YWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
           +W   +PS +   VI A ++++P  GA I +  V++Y L+ G I+    L L+G   + +
Sbjct: 230 FWALDIPSALLWAVIMAFLSLLPAVGAGIVWAPVAVYFLLSGMIWQGVVLGLFGVFVIGL 289

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           VD  LRP LVG   K+P        +GG+   GL G  IGP++ AL    W
Sbjct: 290 VDNVLRPILVGKDTKMPDYLILISTLGGMSVFGLNGFVIGPLVAALFISSW 340


>gi|26990854|ref|NP_746279.1| hypothetical protein PP_4162 [Pseudomonas putida KT2440]
 gi|24985865|gb|AAN69743.1|AE016611_1 membrane protein, putative [Pseudomonas putida KT2440]
          Length = 350

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 148/320 (46%), Gaps = 27/320 (8%)

Query: 32  APVLSAL----IIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           AP +SAL    I+ F SWP+            T  A + T++ + +  +PL++L +    
Sbjct: 25  APFISALLWGAILAFASWPLMRFLTRLLGGRETLAAGLLTMAWILIVALPLVWLGFNLAD 84

Query: 88  EMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            +++  + V      G+P  P WL  IP  G      W        +L    + +    G
Sbjct: 85  HIRDATAFVRDVQVDGLPDAPAWLGGIPFVGERLVNGWQSLDQKGAALLTSIKPYFGQVG 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS--------QQLDSLGEHLFP 197
              + R +++ G   L+  LS++F+    FFFYRDG  ++        + +    E+   
Sbjct: 145 NWLLAR-SAQIGSGVLELTLSLVFV----FFFYRDGPRLAAFVLRLLHRLVGERAEYYLD 199

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                + R+V  VI +      +  IG        + +AGVP  + LG++T ++++IP G
Sbjct: 200 LVAATVQRVVNGVIGTAAAQALLALIG--------FLIAGVPGAIVLGLVTFMLSLIPMG 251

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P+++   + +L+ KG    A  L +WG   +  VD  L+P+L+     LP +    G+ 
Sbjct: 252 PPLAWIPATAWLVWKGEYGMAVFLGVWGTFVISGVDNVLKPYLISRGGNLPLVIVLLGVF 311

Query: 318 GGVRTMGLLGLFIGPVLMAL 337
           GG+   G +GLFIGP L+A+
Sbjct: 312 GGLLAFGFIGLFIGPTLLAV 331


>gi|330810817|ref|YP_004355279.1| hypothetical protein PSEBR_a3885 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378925|gb|AEA70275.1| Conserved hypothetical protein; putative membrane protein
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 353

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 112/217 (51%), Gaps = 10/217 (4%)

Query: 132 SLKILSETFLKT--NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
           +L  L +  +K+   G +F    A  FG     + +S   MI  LFFF RDG  + +++ 
Sbjct: 128 NLNGLRDKIVKSAMQGSEFFATQAFSFGQGTFQFLVSFFVMIYLLFFFLRDGAELVRKVR 187

Query: 190 S---LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           +   L EH      +++     +V+R+T  G  ++AI +G + G  +W+ G+P+ +   V
Sbjct: 188 TAVPLAEH----QKRRLQLKFNRVVRATVKGNLLVAISQGALGGLIFWILGIPTVLPWAV 243

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           + A ++++P  GA + +  V++Y L+ G I+    L L+G   + +VD  LRP LVG   
Sbjct: 244 LMAFLSLLPAVGAGLVWAPVAVYFLLSGAIWQGVVLTLFGVFVIGLVDNFLRPILVGKDT 303

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           K+P        +GG+   GL G  IGP++ AL    W
Sbjct: 304 KMPDYMVLVSTLGGLAVFGLNGFVIGPLIAALFMSSW 340


>gi|171056705|ref|YP_001789054.1| hypothetical protein Lcho_0013 [Leptothrix cholodnii SP-6]
 gi|170774150|gb|ACB32289.1| protein of unknown function UPF0118 [Leptothrix cholodnii SP-6]
          Length = 363

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 116/211 (54%), Gaps = 3/211 (1%)

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL---FFFYRDGFSISQQLDSLGE 193
               LK    +   ++A R   I  D  ++ +   +AL   FF +RDG  + +QL  + +
Sbjct: 141 DRAALKLQLTELAEQWAGRTLRILGDVGVNALLFGVALVTSFFLFRDGDRLLEQLRRILQ 200

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            L           V    R+   G+ + A  +GL+ G  YW+AGV + V  G  TA++A+
Sbjct: 201 GLLGERVDGYFNAVGDTTRAVVYGLLLAATAQGLMAGLGYWVAGVKAPVFWGAATAVIAL 260

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP GAP+ + ++ ++LL++G +     L LWG + +  +D  +RP ++ G   +PFL   
Sbjct: 261 IPFGAPLVWGSIGLWLLLQGQLGAGIGLLLWGGLAVSWIDNLVRPMVISGVADIPFLLVL 320

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           FG++GG+   GL+GLF+GPV++A++  +W+E
Sbjct: 321 FGVMGGLAAFGLIGLFVGPVVLAVLLALWRE 351


>gi|28870542|ref|NP_793161.1| hypothetical protein PSPTO_3378 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28853790|gb|AAO56856.1| membrane protein, putative [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 354

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 104/203 (51%), Gaps = 8/203 (3%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS---LGEHLFPAYW 200
            G  ++   A  FG    D+ +S+  M+  L+FF RDG  + +++ +   LGE       
Sbjct: 142 QGSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRDGQELVRKIRTAFPLGEQQKRRLQ 201

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
            K +R+V    R+T  G  ++A+ +G + G  +W   +PS +   VI A ++++P  GA 
Sbjct: 202 LKFTRVV----RATVKGNVVVAVTQGALGGFIFWALDIPSALLWAVIMAFLSLLPAVGAG 257

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           I +  V++Y L+ G I+    L L+G   + +VD  LRP LVG   K+P        +GG
Sbjct: 258 IVWAPVALYFLLSGMIWQGVVLGLFGVFVIGLVDNVLRPILVGKDTKMPDYLILISTLGG 317

Query: 320 VRTMGLLGLFIGPVLMALIAVIW 342
           +   GL G  IGP++ AL    W
Sbjct: 318 MSVFGLNGFLIGPLIAALFISSW 340


>gi|170722651|ref|YP_001750339.1| hypothetical protein PputW619_3487 [Pseudomonas putida W619]
 gi|169760654|gb|ACA73970.1| protein of unknown function UPF0118 [Pseudomonas putida W619]
          Length = 354

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 149/325 (45%), Gaps = 23/325 (7%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           +L+ +  F + +L   I+ F SWP+            T  A + T + + +  +PL++L 
Sbjct: 24  ALWVMAPFISALLWGAILAFASWPLMRLLTRALGGRETLAAGLLTSAWILIVALPLVWLG 83

Query: 83  YYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETF 140
           +     +++  + V      G+P  P WL  IP  G      W        +L    +  
Sbjct: 84  FNLADHVRDATAFVRDVQVDGLPDAPAWLGGIPLVGERLVSGWQSLDQQGAALIASVKPH 143

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS--------QQLDSLG 192
           L   G   + R +++ G   L+  LS++F+    FFFYRDG  ++        + +    
Sbjct: 144 LGQVGNWLLAR-SAQIGSGVLELTLSLVFV----FFFYRDGPRLAAFVLRLLNRLVGERA 198

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           E+        + R+V  VI +      +  IG        + +AGVP  + LG++T +++
Sbjct: 199 EYYLELVAGTVQRVVNGVIGTAAAQALLALIG--------FLIAGVPGAIVLGLVTFMLS 250

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +IP G P+++   + +L+ +G    A  L +WG   +  VD  L+P+L+     LP +  
Sbjct: 251 LIPMGPPLAWIPATAWLVWQGEYGMAVFLGIWGTFVISGVDNVLKPYLISRGGNLPLVIV 310

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMAL 337
             G+ GG+   G +GLFIGP L+A+
Sbjct: 311 LLGVFGGLIAFGFIGLFIGPTLLAV 335


>gi|330958144|gb|EGH58404.1| hypothetical protein PMA4326_06145 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 354

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 104/203 (51%), Gaps = 8/203 (3%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS---LGEHLFPAYW 200
            G  ++   A  FG    D+ +S+  M+  L+FF RDG  + +++ +   LGE       
Sbjct: 142 QGSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRDGQELVRKIRTAFPLGEQQKRRLQ 201

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
            K +R+V    R+T  G  ++A+ +G + G  +W   +PS +   VI A ++++P  GA 
Sbjct: 202 LKFTRVV----RATVKGNVVVAVTQGALGGFIFWALDIPSALLWAVIMAFLSLLPAVGAG 257

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           I +  V++Y L+ G I+    L L+G   + +VD  LRP LVG   K+P        +GG
Sbjct: 258 IVWAPVAVYFLLSGMIWQGVVLGLFGVFVIGLVDNVLRPILVGKDTKMPDYLILISTLGG 317

Query: 320 VRTMGLLGLFIGPVLMALIAVIW 342
           +   GL G  IGP++ AL    W
Sbjct: 318 MSVFGLNGFVIGPLVAALFISSW 340


>gi|21674815|ref|NP_662880.1| hypothetical protein CT2004 [Chlorobium tepidum TLS]
 gi|21648033|gb|AAM73222.1| membrane protein, putative [Chlorobium tepidum TLS]
          Length = 366

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 161/350 (46%), Gaps = 23/350 (6%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           M  PQ     +++  +L+S  FL   + F   +L A I    ++P++S FI+      + 
Sbjct: 1   MNTPQFNKIAVLVATLLISALFLTMIRQFLVTILLAGIFTGLAYPLFSRFITLTRGHRSL 60

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP----RWLSDIPGGM 117
            A +  V    +  +PLL +F   +L+   L S  +   +  +  P    R LS +P   
Sbjct: 61  SASMTLVIFFMMVFLPLLAVFTVVILQAVSLSSTAIPLIREQLRDPEGFLRMLSSLP--- 117

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                +    S+   +   +   L   G   +  F++       D  L IIF    +FF 
Sbjct: 118 ----FYKDIESYSDLILEKAAEILGNLGSSVLSSFSAITWTAIYDLVLFIIFWY-TMFFL 172

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPK---VIRSTFLGMTIIAIGEGLVLGSAYW 234
            RDG  + +++    ++  P       R+  +   V R++  G  IIA+ +G + G A++
Sbjct: 173 LRDGHELLERI----KYYLPLNESDQRRLFDRFVSVTRASLKGSLIIAVIQGTLAGLAFY 228

Query: 235 LAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
           +AG+   V  G I A+++++P  G+PI +    I L + GN   A  LFL+ +I +  +D
Sbjct: 229 VAGINQAVFWGAIMAMLSLLPLIGSPIIWVPAVIILALSGNYAQAIGLFLFCSIIVGQID 288

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             LRP LVG    +  L  FFG +GG+   GL G  IGPV+ AL   +W 
Sbjct: 289 NVLRPILVGRDTSMHELFIFFGTLGGIGMFGLPGFIIGPVVAALFVTVWD 338


>gi|319779612|ref|YP_004130525.1| hypothetical protein TEQUI_1468 [Taylorella equigenitalis MCE9]
 gi|317109636|gb|ADU92382.1| membrane protein, putative [Taylorella equigenitalis MCE9]
          Length = 387

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 106/209 (50%), Gaps = 21/209 (10%)

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSL----GEHLFPAYWKKISRIVPKVIRSTFLGM 218
           + + +  M+  ++FF RDG +I + +       G H    + K ++     V+R+T  G 
Sbjct: 162 FIMDLGIMLYLMYFFIRDGETIKEYIKRFTPLSGNHKIKLFSKFLT-----VVRATVKGN 216

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFN 277
            ++AI +G + G  + + G+PS +  GVI A ++++P  GA + +  V+IYLL+ G++  
Sbjct: 217 MLVAIAQGALGGFIFAVLGIPSPILWGVIMAFLSLLPAIGAALVWLPVAIYLLVSGSLVE 276

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
              L +WG + + + D  LRP LVG   +LP        +GG+   GL G  IGP+L AL
Sbjct: 277 GIILMVWGVVVIGMSDNLLRPILVGKDTRLPDYLILITTIGGMAVFGLNGFVIGPLLAAL 336

Query: 338 IAVIWKE-----------SIMAIKENKEK 355
               W E            + AI+ N E+
Sbjct: 337 FITFWGELPNAVGLLEEDDVAAIESNHEE 365


>gi|213970022|ref|ZP_03398154.1| membrane protein [Pseudomonas syringae pv. tomato T1]
 gi|301381377|ref|ZP_07229795.1| hypothetical protein PsyrptM_02033 [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062148|ref|ZP_07253689.1| hypothetical protein PsyrptK_19351 [Pseudomonas syringae pv. tomato
           K40]
 gi|302130458|ref|ZP_07256448.1| hypothetical protein PsyrptN_03622 [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213925126|gb|EEB58689.1| membrane protein [Pseudomonas syringae pv. tomato T1]
 gi|330875760|gb|EGH09909.1| hypothetical protein PSYMP_11317 [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330965579|gb|EGH65839.1| hypothetical protein PSYAC_13156 [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|331017284|gb|EGH97340.1| hypothetical protein PLA106_14651 [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 354

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 104/203 (51%), Gaps = 8/203 (3%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS---LGEHLFPAYW 200
            G  ++   A  FG    D+ +S+  M+  L+FF RDG  + +++ +   LGE       
Sbjct: 142 QGSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRDGQELVRKIRTAFPLGEQQKRRLQ 201

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
            K +R+V    R+T  G  ++A+ +G + G  +W   +PS +   VI A ++++P  GA 
Sbjct: 202 LKFTRVV----RATVKGNVVVAVTQGALGGFIFWALDIPSALLWAVIMAFLSLLPAVGAG 257

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           I +  V++Y L+ G I+    L L+G   + +VD  LRP LVG   K+P        +GG
Sbjct: 258 IVWAPVALYFLLSGMIWQGVVLGLFGVFVIGLVDNVLRPILVGKDTKMPDYLILISTLGG 317

Query: 320 VRTMGLLGLFIGPVLMALIAVIW 342
           +   GL G  IGP++ AL    W
Sbjct: 318 MSVFGLNGFVIGPLIAALFISSW 340


>gi|167589269|ref|ZP_02381657.1| hypothetical protein BuboB_28291 [Burkholderia ubonensis Bu]
          Length = 119

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/116 (44%), Positives = 74/116 (63%)

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
           LG AY LAGVP    LG++TAI AM+P  API F   +++L ++G    A  +   G + 
Sbjct: 1   LGIAYVLAGVPHAALLGLVTAIAAMLPFCAPIVFCGAALWLFVQGATAWAVAVAATGFVV 60

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           +F+ +  +RP L+G   +LPFL   FG++GG  T GLLGLFIGP LM ++ ++W E
Sbjct: 61  VFVAEHFVRPVLIGSSARLPFLLVLFGILGGAETFGLLGLFIGPALMTVLTMLWAE 116


>gi|121610898|ref|YP_998705.1| hypothetical protein Veis_3980 [Verminephrobacter eiseniae EF01-2]
 gi|121555538|gb|ABM59687.1| protein of unknown function UPF0118 [Verminephrobacter eiseniae
           EF01-2]
          Length = 352

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 157/348 (45%), Gaps = 38/348 (10%)

Query: 16  IMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           ++ +ILV++ F   L  F   V   +I+     P +   + +     T  A+      + 
Sbjct: 12  VLLLILVTIAFGAILWQFHGAVFWGVILAILFAPWHRRLLDRMPGRPTLAALCTLALCLI 71

Query: 73  LFIVPLLFL--------------FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
           + I+PL  +               Y G ++    + +V+ A      +P W  ++  G+ 
Sbjct: 72  VVILPLAAITVSLAQEATVIYERVYTGQIDFGLYLQQVIAA------LPAWAVNLLDGLH 125

Query: 119 ASEL--WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
            + +  W + LS   ++ + +  FL T  ++         G   L++ +S   M+  LFF
Sbjct: 126 LTSVGQWQQRLS---AVAVQASQFLATQALNI--------GQNTLEFIVSFGVMLYLLFF 174

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
             RDG  ++ ++      L P + + + R    VIR+T  G  ++A  +G + G  +W+ 
Sbjct: 175 LLRDGPRLALRIGQ-ATPLEPNHKQPLIRNFTTVIRATVKGNIVVAAAQGALGGLIFWVL 233

Query: 237 GVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
           G+   V  GV+ A ++++P  GA + +  V+IY L  G I+    L  +G   + +VD  
Sbjct: 234 GIQGPVLWGVLMAFLSLLPAVGAGLIWVPVAIYFLATGAIWQGVVLTAFGVGVIGLVDNI 293

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           LRP LVG   K+P        +GG+   GL+G  IGPV+ AL    W+
Sbjct: 294 LRPILVGKDTKMPDYIVLISTLGGMALFGLMGFVIGPVIAALFIASWE 341


>gi|83644526|ref|YP_432961.1| permease [Hahella chejuensis KCTC 2396]
 gi|83632569|gb|ABC28536.1| predicted permease [Hahella chejuensis KCTC 2396]
          Length = 361

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 114/234 (48%), Gaps = 18/234 (7%)

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL----- 188
           ++LS+  L   G  F    A  FG  +L + +S + M+   FFF RDG S+ Q L     
Sbjct: 131 QMLSQAAL--TGSKFFATQAFNFGQEYLQFTVSFVLMLYLTFFFLRDGGSLIQLLIRALP 188

Query: 189 --DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
             D+   HLF  +         +V R+T  G  ++AI +G + G  +W  G+   +  GV
Sbjct: 189 LGDTREMHLFQKF--------AEVSRATVKGNLVVAIVQGTLGGLIFWALGIKGALLWGV 240

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +  +++++P  G+ + +   + YL   G++F    L L+G   + +VD  LRP LVG   
Sbjct: 241 VMVVLSLLPAVGSALVWAPAAAYLFFSGDVFKGVVLVLFGFFVIGLVDNVLRPVLVGRDT 300

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           K+P        +GG+   GL G  +GPVL AL    W+  +     N+EK  S+
Sbjct: 301 KMPDYLVLLSTLGGLSLFGLNGFVLGPVLTALFLAFWQIFMEEFNNNEEKSISD 354


>gi|39995960|ref|NP_951911.1| membrane protein [Geobacter sulfurreducens PCA]
 gi|39982725|gb|AAR34184.1| membrane protein [Geobacter sulfurreducens PCA]
 gi|298504973|gb|ADI83696.1| membrane protein [Geobacter sulfurreducens KN400]
          Length = 363

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 153/317 (48%), Gaps = 27/317 (8%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F AP+  A +IG  ++P+Y    +         A I T +V+   +VP++ L ++     
Sbjct: 29  FLAPLGWAAVIGVLTFPLYRKLRAGVGGRELLAAGIMTPAVVITLVVPVVGLTFF----- 83

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID-- 147
             ++ +  LA Q    + R  +D  G    +++   HL HP   +I + T   +  ID  
Sbjct: 84  --IIQEATLAYQF---LERVAAD-GGEAVLAKIRAHHLIHPWITRIEAYTGPLSLEIDTT 137

Query: 148 FIPRFASRFGMI-----------FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           F+P        I           FL + L II M+IALFF Y DG  + +++ ++   L 
Sbjct: 138 FLPEVKEVAAKILGYSKEAVKNAFL-FILKIILMVIALFFIYLDGERVQRRVLAI-IPLT 195

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
             +  ++S  V +V+ +   G+ +  + +G + G    +AG+PS V  G I A+ A+IP 
Sbjct: 196 EQHKIELSDTVRRVLTAVMFGVFLTCLVQGALGGIGLLVAGIPSPVLFGAIMAVCALIPV 255

Query: 257 -GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G  + +   +IYLL+ G I     L +WG   +  +D  +RPF + G  KLP L    G
Sbjct: 256 VGTALIWLPAAIYLLLNGQIVQGVGLMIWGFAVVSSIDNVIRPFFISGKAKLPVLVIAIG 315

Query: 316 LVGGVRTMGLLGLFIGP 332
            +GG+ + GLLG  IGP
Sbjct: 316 GLGGLASFGLLGAVIGP 332


>gi|302058489|ref|ZP_07250030.1| lipoprotein, putative [Pseudomonas syringae pv. tomato K40]
          Length = 349

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 147/320 (45%), Gaps = 27/320 (8%)

Query: 32  APVLSALIIG----FTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           AP  SAL+ G    F SWP+        +   +  A++  +  M L   PL++L +    
Sbjct: 25  APFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAALVMCLCWMLLVAAPLVWLGFNLAD 84

Query: 88  EMKELVSKVVLANQHGIPVP-RWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            +++  + +      G+P P +WL+ I   G      WT       +     + +L   G
Sbjct: 85  HVRDATALIKDIQVDGLPDPPQWLAGIQLVGERLVGFWTTIDQQGAAFMTTVKPYLGEVG 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF---PAYW-- 200
              + R A   G I L+  LSI+F     FFFYRDG  ++  + SL E L      Y+  
Sbjct: 145 NWLLARSAQIGGGI-LELTLSIVFA----FFFYRDGPRLAAFVLSLLERLIGDRAQYYLD 199

Query: 201 ---KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                + R+V  VI +      +  IG        + +AG+P  + LG++T + ++IP G
Sbjct: 200 LVAGTVQRVVNGVIGTAAAQALLALIG--------FLIAGIPGALVLGILTFLFSLIPMG 251

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P+ +   + +L+ +G    A  L +WG   +  VD  L+P+L+     LP +    G+ 
Sbjct: 252 PPLVWLPATAWLVWQGEYGMAIFLGIWGMFVISGVDNVLKPYLISRGGNLPLVIVLLGVF 311

Query: 318 GGVRTMGLLGLFIGPVLMAL 337
           GG+   G +GLFIGP L+A+
Sbjct: 312 GGLLAFGFIGLFIGPTLLAV 331


>gi|23008271|ref|ZP_00049786.1| COG0628: Predicted permease [Magnetospirillum magnetotacticum MS-1]
          Length = 125

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/126 (42%), Positives = 77/126 (61%), Gaps = 1/126 (0%)

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           Y LAGVP  V  G ITA+ AMIP GAP++F   ++ LL  G +  A  +   G +  F+ 
Sbjct: 1   YALAGVPHPVLFGAITAVAAMIPFGAPLAFGLAAVLLLAGGAVVPAAIVVAAGFVVTFVA 60

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           D  +RP L+GG  +LPFL    G++GGV T GLLGLF+GP +MA + ++W++      E 
Sbjct: 61  DHFVRPVLIGGTTRLPFLWVLLGILGGVETFGLLGLFVGPAVMAALILLWRD-FTGSPEE 119

Query: 353 KEKISS 358
           +  +S+
Sbjct: 120 RPALSA 125


>gi|254428305|ref|ZP_05042012.1| conserved domain protein, putative [Alcanivorax sp. DG881]
 gi|196194474|gb|EDX89433.1| conserved domain protein, putative [Alcanivorax sp. DG881]
          Length = 371

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 172/381 (45%), Gaps = 48/381 (12%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           MR+T ++ +   R  +  ++ VS  F   ++ FFAP+  A  I    +P +   +++  +
Sbjct: 1   MRDTGISEKLEQRAFLFSLVAVSAVFALLIQPFFAPIFWACAISVIFYPFHKRLLARWPQ 60

Query: 58  SSTFLAVIATVSVMCL-----------FIVPLLFLFYY---GMLEMKELVSKVVLANQHG 103
               +A+   +  + L           F+   + LF     G +++   V K+    +H 
Sbjct: 61  RRNLVALFTLLLCVVLVVIPVLAVATSFVSEGVGLFQKVQSGEIDLASYVDKI----KHA 116

Query: 104 IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK--TNGIDFIPRFASRFGMIFL 161
            P  + L++                    L+ + E  +K  T    F+ + A   G    
Sbjct: 117 FPGVQSLAE---------------RFDVDLEKIKEQAVKAFTGAGQFLAKRALAVGQNTF 161

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDS---LGEHLFPAYWKKISRIVPKVIRSTFLGM 218
            + L++  M+   FF  RDG S+   L     LG+      + K +    +V R+T  G 
Sbjct: 162 QFFLNLGLMLYLAFFLIRDGDSMVAMLIRALPLGDEREKLLFAKFA----EVTRATIKGN 217

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFN 277
            ++AI +G + G  +W  G+P  +  GV+ A++++IP  GA + +  V++YL   G++  
Sbjct: 218 LLVAITQGALGGLIFWWLGIPGALLWGVVMAVLSLIPAVGAGLIWFPVALYLYAVGDMKE 277

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           AT L L+G   + +VD  LRP LVG   KLP     F  +GG+   G+ G  +GP+L AL
Sbjct: 278 ATILILFGVFVIGLVDNLLRPILVGRDTKLPDYVVLFSTLGGLAMFGITGFAVGPLLAAL 337

Query: 338 IAVIWKESIMAIKENKEKISS 358
               W   I   + N+E +++
Sbjct: 338 FVAFW--GIFIREFNEEGVAA 356


>gi|289679219|ref|ZP_06500109.1| hypothetical protein PsyrpsF_38341 [Pseudomonas syringae pv.
           syringae FF5]
          Length = 330

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 100/193 (51%), Gaps = 8/193 (4%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS---LGEHLFPAYW 200
            G  ++   A  FG    D+ +S+  M+  L+FF RDG  + +++ +   LGE       
Sbjct: 142 QGSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRDGQELVRKIRTAFPLGEQQKRRLQ 201

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
            K +R+V    R+T  G  ++A+ +G + G  +W+  +PS +   VI A ++++P  GA 
Sbjct: 202 LKFTRVV----RATVKGNVVVAVTQGALGGFIFWVLDIPSALLWAVIMAFLSLLPAVGAG 257

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           I +  V++Y L+ G I+    L L+G   + +VD  LRP LVG   K+P        +GG
Sbjct: 258 IVWAPVAVYFLLSGMIWQGVVLGLFGVFVIGLVDNVLRPILVGKDTKMPDYLILISTLGG 317

Query: 320 VRTMGLLGLFIGP 332
           +   GL G  IGP
Sbjct: 318 MSVFGLNGFVIGP 330


>gi|83858202|ref|ZP_00951724.1| hypothetical protein OA2633_01846 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853025|gb|EAP90877.1| hypothetical protein OA2633_01846 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 380

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 99/182 (54%), Gaps = 8/182 (4%)

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK---VIRSTFLGMTII 221
           L ++ M+ ALFFF   G S+++     G  L P   +    +V +    IR+T  G  +I
Sbjct: 182 LDLVVMLFALFFFLTRGPSLAEH----GLKLMPMPREDRDLLVERAMSTIRATVKGTFVI 237

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATC 280
           AI +G++ G A  LAGVP  +    +T ++++IPG G P+ +    I+L+  G+      
Sbjct: 238 AIIQGVLTGIALALAGVPGALFWATVTTVLSVIPGIGPPLVWGPAGIWLIASGHYVAGGL 297

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           L  WGA+ + ++D  LRP LVG   KLP L      +GG+   G +G+ +GP++ AL + 
Sbjct: 298 LIAWGALVVGLIDNLLRPRLVGQDAKLPDLMILISTLGGLTLFGAVGIIVGPMIAALFSS 357

Query: 341 IW 342
           IW
Sbjct: 358 IW 359


>gi|258592868|emb|CBE69177.1| conserved membrane protein of unknown function [NC10 bacterium
           'Dutch sediment']
          Length = 378

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 147/318 (46%), Gaps = 23/318 (7%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F +P+  A+I+     P+Y   + +    S   A++ T++V+   ++P +     G +  
Sbjct: 43  FASPIFWAVILVVVFQPVYRRLLHRLGGKSGLAALLLTIAVIAAVMIPAIL---SGWVLT 99

Query: 90  KELVSKVVLA----NQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS---LKILSETFLK 142
           +E VS    A     Q G+     ++  P  M    LW + +S P +     + +     
Sbjct: 100 QEAVSFYQAAERVYQQEGLA---GIASHPAVMAGRVLWDR-VSLPFTRLGFDLNALLLGG 155

Query: 143 TNGID-FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS---QQLDSLGEHLFPA 198
              +  FI        +  L + +++   +   FF  RDG +I    Q++  L      A
Sbjct: 156 LGAVSSFIVDNLKGIAINLLSFTVNLFLAVFTFFFLLRDGEAIVYSLQRILPLERKHAEA 215

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GG 257
            + ++   V  V+R T     + A+ +G++ G  YW  GVP  V LG+ TA+ +++P GG
Sbjct: 216 LFSRLYEAVSAVVRGTI----VTALAQGILGGVGYWAVGVPYPVFLGLATALFSLLPVGG 271

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
           + + +   + YL ++G       L  W  + +   D  L+P L+ G   LP L  FFG++
Sbjct: 272 SAVIWIPAAFYLFLEGGWIRGLLLLAWSTVVVSTADNVLKPALISGGTNLPTLFLFFGML 331

Query: 318 GGVRTMGLLGLFIGPVLM 335
           GG++  G+LG  +GPVL+
Sbjct: 332 GGLQVFGILGFILGPVLL 349


>gi|94971052|ref|YP_593100.1| hypothetical protein Acid345_4026 [Candidatus Koribacter versatilis
           Ellin345]
 gi|94553102|gb|ABF43026.1| protein of unknown function UPF0118 [Candidatus Koribacter
           versatilis Ellin345]
          Length = 360

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 151/332 (45%), Gaps = 15/332 (4%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFI--SKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           F  PV  A++I     P+Y   +  +K+  +++FL +I  ++++ +    L+       +
Sbjct: 29  FIKPVAFAIVIAVVFNPLYQRLLKRTKRPGTASFLTIIVFITLLAIPASFLVVTATRQAM 88

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           ++   VS+   A+    P    +S  P       L       P  LK   E  L      
Sbjct: 89  DVGHRVSETTTAHGGVAPTIERVSAKPLATLGRYLRIP----PSELKQRIEDKLNVWAGR 144

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI- 206
            + +  +    +F     S I  +I +FF +RDG  + + +D     + P   +++ RI 
Sbjct: 145 MMSQSGALLANLFSLLANSFI-ALITVFFLFRDGERVIEGMD----RVLPITKEQLQRIL 199

Query: 207 --VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
             +   I +   GM  +   +G +         V S + LG++ A+ ++IP  G  + + 
Sbjct: 200 NGISNSIVANVYGMAAVGAAQGFLTALGLAFCSVSSSILLGLVAAMCSLIPIVGTGLVWV 259

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             + YL+I G++     L  WGA  +  +D  +RP ++ G ++   L   F L+GGV+  
Sbjct: 260 PAAGYLMITGHVGKGIFLLAWGAFVVSSIDNVIRPMVIQGRVQAHPLLILFALLGGVQAF 319

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           GL+GLF GP+L+++I V+ +  +  I+E   K
Sbjct: 320 GLIGLFAGPILLSVITVLLQIMLEEIREKDAK 351


>gi|290508508|ref|ZP_06547879.1| hypothetical protein HMPREF0485_00279 [Klebsiella sp. 1_1_55]
 gi|289777902|gb|EFD85899.1| hypothetical protein HMPREF0485_00279 [Klebsiella sp. 1_1_55]
          Length = 369

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 171/363 (47%), Gaps = 33/363 (9%)

Query: 15  MIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           +I+FI+ ++ +  L  +++ +L A I+     P+ +   ++  E +  LA + T+ ++CL
Sbjct: 13  LIVFIVTLAFFDVLSPYYSAILWAAILAVIFNPVKNKIRTRLGERNG-LAALLTIVIICL 71

Query: 74  FI-VPLLFLFYYGMLEMKELVSKVVLANQHGIP--VPRWLSDIPGGMWASELWTKH--LS 128
            +  PL  +      E+  + SK+   N    P  V    + +PG  WA     +H   S
Sbjct: 72  IVFTPLAIILSSLAYELNVVYSKLQ-HNDTQFPTVVASLFAHLPG--WARSFLAEHNLDS 128

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG-FSISQQ 187
             Q  + LS+  LK+    ++   A   G     + +S   M+  LFF  +DG + +   
Sbjct: 129 AQQIQQQLSDVALKSG--QYLAGSAFLIGKGTFGFTVSFGIMLYLLFFLLKDGPYLVLLT 186

Query: 188 LDSL------GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
           L+SL       +HLF  +          V R+T  G   +A+ +G + G A+W+AG+   
Sbjct: 187 LESLPLSSYVKQHLFAKF--------AAVARATVKGTVAVALAQGALGGFAFWVAGLDGS 238

Query: 242 VALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +  G + A +++IP  G+ I +   +IYL   G ++    +  +  I + +VD  LRP L
Sbjct: 239 ILWGALMAFLSLIPAVGSAIIWVPAAIYLFATGQLWQGAFIVGFFVIVIGLVDNILRPLL 298

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE---NKEKIS 357
           VG   K+P        +GG+   G+ G  IGP++ AL    W  ++++ +E   N +++ 
Sbjct: 299 VGKDTKMPDYLILIATLGGMEIYGINGFVIGPLIAALFIACW--NLLSGREHAGNTDELD 356

Query: 358 SNF 360
             F
Sbjct: 357 EEF 359


>gi|70731365|ref|YP_261106.1| hypothetical protein PFL_4009 [Pseudomonas fluorescens Pf-5]
 gi|68345664|gb|AAY93270.1| membrane protein, putative [Pseudomonas fluorescens Pf-5]
          Length = 353

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 110/217 (50%), Gaps = 10/217 (4%)

Query: 132 SLKILSETFLKT--NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            LK L E  +K+   G  ++   A  FG    ++ +S   M+  LFFF RDG  + +++ 
Sbjct: 128 ELKGLQEKVVKSAMQGSQYLATQAFSFGQGTFEFVVSFFIMLYLLFFFLRDGPELVRKIR 187

Query: 190 S---LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           +   L E+      +++     +V+R+T  G  ++A+ +G + G  +W   +PS +   V
Sbjct: 188 TAVPLAEY----QKRRLQLKFNRVVRATVKGNVLVAVTQGALGGLIFWFLDIPSALLWAV 243

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           + A ++++P  GA I +  V+ Y LI G I+    L L+G   + +VD  LRP LVG   
Sbjct: 244 LMAFLSLLPAVGAGIVWGPVAAYFLISGAIWQGVVLGLFGVFVIGLVDNLLRPILVGKDT 303

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           K+P        +GG+   GL G  IGP++ AL    W
Sbjct: 304 KMPDYLILISTLGGLAIFGLNGFVIGPLIAALFMSSW 340


>gi|237749388|ref|ZP_04579868.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229380750|gb|EEO30841.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 367

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 156/341 (45%), Gaps = 25/341 (7%)

Query: 16  IMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           + F+++V+L F   L  F+  +    ++     P+   F+ K        A++     + 
Sbjct: 12  LFFLLIVTLAFFSILLPFYGGIFWGFVLAILFMPLNDFFLRKMPAKKNLAALLTLAICLL 71

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQH---GIPVPRWLSDIPGGMWASELWTKH-LS 128
           + I+PL+ +    + E   L  K++  NQ          ++S +P   WA ++     +S
Sbjct: 72  IVIIPLIVVAGSLVEESSVLYQKIL--NQKIDSDASFHHFISQLPD--WAVDVLNHFGIS 127

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASR---FGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
               L+  +   +   G        SR    G   LD+ +    M+  LFF  RDG  ++
Sbjct: 128 TFAELQKEATRLILVTG----QYLGSRVFIIGQNVLDFTVGFFVMLYLLFFLLRDGHDLA 183

Query: 186 QQLDSLGEHLFPAYWKKISRIVPK---VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            ++ S      P    + +R++ K   VIR+T  G  ++A+ +G + G  +W  G+ + +
Sbjct: 184 DKIRSK----IPLADNQKTRLLTKFMGVIRATVKGNLVVALVQGGLGGLIFWFLGIEAAL 239

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
             G I ++++++P G+ + +  V+IY L+ G+I     L  +G + + ++D  LRP LVG
Sbjct: 240 LWGAIMSVLSLLPAGSGVVWAPVAIYFLLTGSILKGVILLAFGILVIGLIDNFLRPLLVG 299

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              ++P        +GG+   GL G  IGP++ AL    W 
Sbjct: 300 KDTQMPDYLVLISTIGGMALFGLNGFIIGPMIAALFLTAWD 340


>gi|229589626|ref|YP_002871745.1| hypothetical protein PFLU2129 [Pseudomonas fluorescens SBW25]
 gi|229361492|emb|CAY48368.1| putative membrane protein [Pseudomonas fluorescens SBW25]
          Length = 355

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 108/214 (50%), Gaps = 4/214 (1%)

Query: 132 SLKILSETFLKT--NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
           +L+ L E  +K+   G  F    A  FG    D+ +S   M+  LFF  RDG  + +++ 
Sbjct: 128 NLEGLREKIVKSAMQGSQFFATQAFSFGQGTFDFLVSFFIMLYLLFFLLRDGPELVRKVR 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +      P   +++     +V+R+T  G  ++A+ +G + G  +W   +PS +   V+ A
Sbjct: 188 TAVPLAEPQK-RRLQLKFNRVVRATVKGNVLVAVTQGALGGLIFWFLDIPSALLWAVLMA 246

Query: 250 IMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++++P  GA I +  V+ Y L+ G+I+    L L+G   + +VD  LRP LVG   K+P
Sbjct: 247 FLSLLPAVGAGIVWGPVAAYFLLSGSIWQGVVLALFGVFVIGLVDNVLRPILVGKDTKMP 306

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                   +GG+   GL G  IGP++ AL    W
Sbjct: 307 DYLILISTLGGLSVFGLNGFVIGPLVAALFMSSW 340


>gi|77164019|ref|YP_342544.1| hypothetical protein Noc_0491 [Nitrosococcus oceani ATCC 19707]
 gi|254436267|ref|ZP_05049774.1| conserved domain protein, putative [Nitrosococcus oceani AFC27]
 gi|76882333|gb|ABA57014.1| Protein of unknown function UPF0118 [Nitrosococcus oceani ATCC
           19707]
 gi|207089378|gb|EDZ66650.1| conserved domain protein, putative [Nitrosococcus oceani AFC27]
          Length = 359

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 163/337 (48%), Gaps = 37/337 (10%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +F++++  Y +    A + +AL+     +P+Y+ +I KK      L+ + T+ +  L I 
Sbjct: 26  VFLVMIHEYLIAILLAIIFTALL-----YPVYA-WILKKFNGRQVLSSMTTILLAILMIG 79

Query: 77  PLLFLFYYGMLEMKELVSKVV-------LANQHGIPV---PRWLSDIPGGMWASELWTKH 126
             L      +      +S  +       + +Q+  P+   P+WL       +A +L    
Sbjct: 80  LPLLGLLGAVAAEAIQISNSIAPWIEKKIPDQNASPLHEFPQWLP------FADQL---- 129

Query: 127 LSHPQSLKILSET-FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
              P   +IL++      N   FI    S+     + + ++   M+ A+FFF+  G    
Sbjct: 130 --EPYRTRILAKVGEFAGNAGAFIASGISKATQGTIGFIVNFFIMLYAMFFFFIWG---P 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPK---VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             L +L  +L P   K  S I+ K   V ++T   + II + +G+++G A+W+AG+   +
Sbjct: 185 DSLINLIRYL-PLTEKDRSHILEKGLSVTKATLKSILIIGVLQGILVGLAFWVAGIKGAI 243

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             G IT +++ +PG GAP+ +    IYL+    I  A  + LWG I + +VD  LRP +V
Sbjct: 244 FWGTITVVLSAVPGLGAPVVWIPAVIYLIATDQIGWAIGMTLWGIIIVGLVDNILRPRIV 303

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           G   K+P L      +GG+   G++G+ +GP++ AL+
Sbjct: 304 GSEAKMPDLLILLATLGGILMFGMVGVIVGPIIAALL 340


>gi|239816920|ref|YP_002945830.1| hypothetical protein Vapar_3950 [Variovorax paradoxus S110]
 gi|239803497|gb|ACS20564.1| protein of unknown function UPF0118 [Variovorax paradoxus S110]
          Length = 360

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 163/361 (45%), Gaps = 42/361 (11%)

Query: 5   MLNPQ---GIMRWMIMFIILVSLYFLKGFFAPVL--SALIIGFTSWPIYSSFISKKEESS 59
           M +PQ   G+   ++  + +  L+ L  FF  VL   AL I FT  P+Y   + K     
Sbjct: 1   MNSPQLQRGVFLALLAAVTVAFLWVLMPFFGAVLWGVALAILFT--PLYKRLL-KAMPGK 57

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV--SKVVLANQHGIP---------VPR 108
              A ++T+++ CLFIV +L L   G+  ++E+V  ++ + + Q             VP+
Sbjct: 58  PNAAALSTLAI-CLFIV-ILPLAMVGVSLVQEIVQVTQSIRSGQINFAAYFQQILNAVPQ 115

Query: 109 WLSDI-----PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY 163
           WL ++      G M   E W   +S   +            G   I   A   G    D+
Sbjct: 116 WLLNLFDRFNLGDM---EAWQARISAGAA-----------QGSQLIAGQALTIGQNTFDF 161

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
            +S   M+  L+F  RDG ++S+ +        P     +++    VIR+T  G   +AI
Sbjct: 162 VISFFVMLYLLYFLVRDGSALSKSMREAVPLARPHTHYLLNKFT-TVIRATVKGNVAVAI 220

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLF 282
            +G + G A+WL GV   +   V+ A ++++P  GA + +  V+IY L  G+ +    L 
Sbjct: 221 AQGAIGGLAFWLLGVQGALLWAVLMAFLSLLPAVGAALIWGPVAIYFLATGHFWQGGILV 280

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
             G   + +VD  LRP LVG   ++P        +GG+   G+ G  IGPV+ AL    W
Sbjct: 281 FVGVFVIGLVDNILRPVLVGKDTQMPDYIVLMSTIGGMAIFGINGFVIGPVIAALFMAAW 340

Query: 343 K 343
            
Sbjct: 341 S 341


>gi|312960058|ref|ZP_07774571.1| hypothetical protein PFWH6_1962 [Pseudomonas fluorescens WH6]
 gi|311285715|gb|EFQ64283.1| hypothetical protein PFWH6_1962 [Pseudomonas fluorescens WH6]
          Length = 355

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 108/214 (50%), Gaps = 4/214 (1%)

Query: 132 SLKILSETFLKT--NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
           +L+ L E  +K+   G  F    A  FG    D+ +S   M+  LFF  RDG  + +++ 
Sbjct: 128 NLEGLREKIVKSAMQGSQFFATQAFSFGQGTFDFLVSFFIMLYLLFFLLRDGPELVRKVR 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +      P   +++     +V+R+T  G  ++A+ +G + G  +W   +P+ +   V+ A
Sbjct: 188 TAVPLAEPQK-RRLQLKFNRVVRATVKGNVLVAVTQGALGGLIFWFLDIPNALLWAVLMA 246

Query: 250 IMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++++P  GA I +  V+ Y L+ G+I+    L L+G   + +VD  LRP LVG   K+P
Sbjct: 247 FLSLLPAVGAGIVWAPVAAYFLLSGSIWQGVVLGLFGVFVIGLVDNVLRPILVGKDTKMP 306

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                   +GG+   GL G  IGP++ AL    W
Sbjct: 307 DYLILISTLGGLSVFGLNGFVIGPLVAALFMSSW 340


>gi|288934305|ref|YP_003438364.1| hypothetical protein Kvar_1426 [Klebsiella variicola At-22]
 gi|288889034|gb|ADC57352.1| protein of unknown function UPF0118 [Klebsiella variicola At-22]
          Length = 369

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 160/342 (46%), Gaps = 26/342 (7%)

Query: 15  MIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           +I+FI+ ++ +  L  +++ +L A I+     P+ +   ++  E +  LA + T+ ++CL
Sbjct: 13  LIVFIVTLAFFDVLSPYYSAILWAAILAVIFNPVKNKIRTRLGERNG-LAALLTIVIICL 71

Query: 74  FI-VPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHL--SH 129
            +  PL  +      E+  + SK+   + Q    V    + +PG  WA     +H   S 
Sbjct: 72  IVFTPLAIILSSLAYELNVVYSKLQHNDTQFPTVVASLFAHLPG--WARGFLAEHNLDSA 129

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG-FSISQQL 188
            Q  + LS+  LK+    ++   A   G     + +S   M+  LFF  +DG + +   L
Sbjct: 130 QQIQQQLSDVALKSG--QYLAGSAFLIGKGTFGFTVSFGIMLYLLFFLLKDGPYLVLLTL 187

Query: 189 DSL------GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           +SL       +HLF  +          V R+T  G   +A+ +G + G A+W+AG+   +
Sbjct: 188 ESLPLSSYVKQHLFAKF--------AAVARATVKGTVAVALAQGALGGFAFWVAGLDGSI 239

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             G + A +++IP  G+ I +   +IYL   G ++    +  +  I + +VD  LRP LV
Sbjct: 240 LWGALMAFLSLIPAVGSAIIWVPAAIYLFATGQLWQGAFIVGFFVIVIGLVDNILRPLLV 299

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           G   K+P        +GG+   G+ G  IGP++ AL    W 
Sbjct: 300 GKDTKMPDYLILIATLGGMEIYGINGFVIGPLIAALFIACWN 341


>gi|300115131|ref|YP_003761706.1| hypothetical protein Nwat_2608 [Nitrosococcus watsonii C-113]
 gi|299541068|gb|ADJ29385.1| protein of unknown function UPF0118 [Nitrosococcus watsonii C-113]
          Length = 360

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 166/357 (46%), Gaps = 39/357 (10%)

Query: 4   TMLNPQGIMRWMIMFIIL-------VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           T L+ +   R+  +FI+L       V L  +  +   VL A+I     +P+Y+ +I KK 
Sbjct: 2   TQLDDEAQNRYRKIFIMLLLISILAVFLVMIHEYIIAVLLAIIFTAMLYPVYA-WILKKF 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV-------LANQHGIPV--- 106
                L+ + T+ +  L I   L      +      VS  +       + +Q+   +   
Sbjct: 61  HGKQVLSSMTTLLLAILMIGLPLLGLLGAVAAEAIQVSDTIGPWIEKKIPDQNVSSLHEF 120

Query: 107 PRWLSDIPGGMWASELWTKHLSHPQSLKILSET-FLKTNGIDFIPRFASRFGMIFLDYCL 165
           P+WL       +A +L       P   +IL++      N   FI    S+     + + +
Sbjct: 121 PQWLP------FADQL------EPYRTRILAKVGEFAGNAGAFIASGISKATQGTIGFIV 168

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK---VIRSTFLGMTIIA 222
               M+ A+FFF+  G      L +L  +L P   K  S I+ K   V ++T  G+ II 
Sbjct: 169 KFFIMLYAMFFFFIWG---PDSLINLIRYL-PLTEKDRSHILEKGLSVTKATLKGILIIG 224

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCL 281
           + +G ++G A+W+AG+   +  G IT +++ IPG GAP+ +    IYLL    I  A  +
Sbjct: 225 VLQGTLVGLAFWIAGIKGAIFWGTITVVLSAIPGLGAPVVWIPAVIYLLATNQIGWAIGM 284

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
            LWG I +  VD  LRP +VG   K+P L      +GG+   G++G+ +GP++ AL+
Sbjct: 285 TLWGIIIVGSVDNILRPRIVGSETKMPDLLILLATLGGILMFGMVGVIVGPIIAALL 341


>gi|302038875|ref|YP_003799197.1| hypothetical protein NIDE3589 [Candidatus Nitrospira defluvii]
 gi|300606939|emb|CBK43272.1| conserved membrane protein of unknown function DUF20 [Candidatus
           Nitrospira defluvii]
          Length = 360

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 125/241 (51%), Gaps = 19/241 (7%)

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           +P  LS +PGG    E W +  +  +S     E F+ ++   F     SRF +  L   +
Sbjct: 107 LPDRLSGLPGGHLVRE-WLERFTGRESDL---EQFVLSSAKTF-----SRFIVGELSDLV 157

Query: 166 SIIFMIIA--------LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG 217
             +FM++A        LFFF++DG      L +L   L  ++  KI   + + IR+   G
Sbjct: 158 RDVFMLVADFLVMMFTLFFFFKDGRHWLASLYAL-IPLEASHKDKILARLDQTIRAVVKG 216

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIF 276
           + + AI +GL+ G AY + GVP  + L  +T ++A +P GG  + +  V++YLL  G + 
Sbjct: 217 IVLTAIAQGLLAGVAYAVLGVPFPMVLMALTILLAPLPFGGTALIWGPVALYLLWAGAVG 276

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
               +  WG   +  +D+ L+P  +G   ++P L   F ++GG+   G+LGLF+GP+L+ 
Sbjct: 277 KGLVMLAWGIGVVSTIDQILKPLFIGQGAEIPVLLLTFSVLGGLAVYGILGLFLGPILVG 336

Query: 337 L 337
           L
Sbjct: 337 L 337


>gi|294010794|ref|YP_003544254.1| putative permease [Sphingobium japonicum UT26S]
 gi|292674124|dbj|BAI95642.1| putative permease [Sphingobium japonicum UT26S]
          Length = 369

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 151/339 (44%), Gaps = 24/339 (7%)

Query: 18  FIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           F+++VS+ F   ++ FFA +L  +I      P+    +          A +  + ++ L 
Sbjct: 19  FVLIVSVAFALVIEPFFAAILWGVIAAILFAPVNQGLVGMMPRHRNSAAALTLLLIVALV 78

Query: 75  IVPLLFL---------FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           IVP + L          +Y  ++  E+    + A Q    +PRW +      +   L   
Sbjct: 79  IVPAIILAMALVQEATLFYAKVQTGEINFARMFA-QFQASLPRWAAA-----FLERLGIT 132

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           + +  +  ++LSE    T+    +   A + G     + +++  M+   FF  RDG  ++
Sbjct: 133 NFAAVR--EMLSEGI--TSSFRTVATQALQIGQSAFSFLMALGVMLYLTFFLLRDGPKLA 188

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +D     +  AY + + +    VIR+T  G  ++AI +G++ G  +W  G+P  +  G
Sbjct: 189 AMVDR-AAPMRTAYRQALMQQFVIVIRATIKGSIVVAIVQGVIGGVVFWALGLPGALLWG 247

Query: 246 VITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           V+    ++IP  G  + +  V+IYL + G +     L   G   + +VD  LRP LVG  
Sbjct: 248 VLMGAFSLIPAVGTGLVWVPVAIYLFVTGAVVEGLILAFCGMFVIGMVDNILRPILVGRD 307

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            ++P        +GG+   G  G+ IGPV+ AL    W 
Sbjct: 308 TRIPDYVVLITTLGGIDLFGFNGIVIGPVIAALFIATWN 346


>gi|192288979|ref|YP_001989584.1| hypothetical protein Rpal_0549 [Rhodopseudomonas palustris TIE-1]
 gi|192282728|gb|ACE99108.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           TIE-1]
          Length = 384

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 125/252 (49%), Gaps = 17/252 (6%)

Query: 107 PRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLS 166
           P WL D+      S     +L+  Q  + LS   L+  G  ++   A   G    D+ ++
Sbjct: 112 PDWLGDL-----LSRFGVGNLADIQ--QRLSAALLR--GSQYLAGQALDIGQSTFDFTVN 162

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK---VIRSTFLGMTIIAI 223
           +  M+  LFF  RDG  ++ ++        P      +R++ K   VIR+T  G  +IA+
Sbjct: 163 LFVMVYLLFFLLRDGDLLAARI----RRATPLGVDHQTRLLDKFTVVIRATVKGNMLIAL 218

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLF 282
            +G + G A+++ G+   +   V+ A ++++P  GA I +  +++YL+  G++++   L 
Sbjct: 219 IQGALGGLAFYVLGISGALMWAVVMAFLSLLPAVGAGIVWLPMALYLIASGSVWHGVGLI 278

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +WG + + +VD  LRP LVG   ++P        +GG+   GL G  IGPV+ A+    W
Sbjct: 279 VWGMLVIGMVDNFLRPILVGKDTRMPDYVVLISTLGGLEVFGLNGFVIGPVIAAMFIATW 338

Query: 343 KESIMAIKENKE 354
               +A ++  +
Sbjct: 339 DIYSIAREDAGD 350


>gi|39933625|ref|NP_945901.1| hypothetical protein RPA0548 [Rhodopseudomonas palustris CGA009]
 gi|39647471|emb|CAE25992.1| Protein of unknown function UPF0118 [Rhodopseudomonas palustris
           CGA009]
          Length = 386

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 125/252 (49%), Gaps = 17/252 (6%)

Query: 107 PRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLS 166
           P WL D+      S     +L+  Q  + LS   L+  G  ++   A   G    D+ ++
Sbjct: 112 PDWLGDL-----LSRFGVGNLADIQ--QRLSAALLR--GSQYLAGQALDIGQSTFDFTVN 162

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK---VIRSTFLGMTIIAI 223
           +  M+  LFF  RDG  ++ ++        P      +R++ K   VIR+T  G  +IA+
Sbjct: 163 LFVMVYLLFFLLRDGDLLAARI----RRATPLGVDHQTRLLDKFTVVIRATVKGNMLIAL 218

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLF 282
            +G + G A+++ G+   +   V+ A ++++P  GA I +  +++YL+  G++++   L 
Sbjct: 219 IQGALGGLAFYVLGISGALMWAVVMAFLSLLPAVGAGIVWLPMALYLIASGSVWHGVGLI 278

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +WG + + +VD  LRP LVG   ++P        +GG+   GL G  IGPV+ A+    W
Sbjct: 279 VWGMLVIGMVDNFLRPILVGKDTRMPDYVVLISTLGGLEVFGLNGFVIGPVIAAMFIATW 338

Query: 343 KESIMAIKENKE 354
               +A ++  +
Sbjct: 339 DIYSIAREDAGD 350


>gi|94309527|ref|YP_582737.1| hypothetical protein Rmet_0582 [Cupriavidus metallidurans CH34]
 gi|93353379|gb|ABF07468.1| conserved hypothetical protein; putative membrane protein
           [Cupriavidus metallidurans CH34]
          Length = 367

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 149/352 (42%), Gaps = 40/352 (11%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           SL  L  F   +L   I+ ++SW  Y+             A+I  +    + + P ++  
Sbjct: 23  SLLVLAPFATALLWGAILAYSSWHPYTVLTRWLGNRRGLAALICVLIATVIVLGPFVYAG 82

Query: 83  YYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETF 140
                 + EL + V    +HGIP +P WLS +P  G      W K ++        SET 
Sbjct: 83  ASFSAHIDELTALVNRYTEHGIPQLPDWLSSLPFVGPQIESAWNKVITAD------SET- 135

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSI-------IFMIIALFFFYRDG--------FSIS 185
                +  + +  +  G   L   LSI          I+  FFFY  G          + 
Sbjct: 136 -----VASLRKLIAPVGHALLGAGLSIGAGLGQLALSIVLAFFFYTGGELAVDWVRGGMR 190

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +      +HL       +  +V  V+ + F+   +  IG        +W+AGVP    LG
Sbjct: 191 RVSGDRADHLLSLAGSTVKGVVYGVLGTAFVQAVLAGIG--------FWIAGVPGAAILG 242

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            IT  ++++P G P+++   +++L   G    A  + +WGA  + + D  ++P L+    
Sbjct: 243 FITFFLSVVPMGPPLAWIPAALWLYHTGETGWAIFMVVWGAAVVGMADNVIKPLLISKGT 302

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
            LP +    G++GG    G LG+FIGP ++A+   + ++  +    N+E+ S
Sbjct: 303 GLPLIWIMMGVLGGALAFGFLGVFIGPTVLAVAYALLRDWTIG---NQERAS 351


>gi|160898931|ref|YP_001564513.1| hypothetical protein Daci_3492 [Delftia acidovorans SPH-1]
 gi|160364515|gb|ABX36128.1| protein of unknown function UPF0118 [Delftia acidovorans SPH-1]
          Length = 387

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 142/315 (45%), Gaps = 10/315 (3%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGI 104
           P++   +++    +   A+   +  + + I+PL  +    + E   +  +V   N   G 
Sbjct: 45  PLHRRLLARMPRRTNLAALSTLLLCLVVAILPLALIGASLVREASLIYERVNSGNLDAGT 104

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF--LKTNGIDFIPRFASRFGMIFLD 162
            + + +  +P   W +  W + L H  SL  L +    +           A   G     
Sbjct: 105 YLQQIMDALPS--WVTP-WLERL-HLGSLAELQDKLSSIAMQASKLAATKALGIGQNTFG 160

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
           + +    M+  LFF  RDG  ++Q++  +   L   +  ++S     VIR+T  G   +A
Sbjct: 161 FLVGFCVMLYLLFFLLRDGRDLTQRI-RMAIPLQADHKAELSSKFTTVIRATVKGNLAVA 219

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCL 281
             +G + G  +W+ G+   V  GV+ A ++++P  GA + +  V+IY L  G +     L
Sbjct: 220 AAQGALGGLIFWILGIQGPVLWGVVMAFLSLLPAVGAGLIWAPVAIYFLATGAMGKGLIL 279

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             +G + + +VD  LRP LVG   K+P        +GG+   GL G  IGPV+ AL   I
Sbjct: 280 IAYGVLVIGLVDNVLRPLLVGKDTKMPDYIVLISTLGGMALFGLTGFVIGPVIAALFMAI 339

Query: 342 WKE-SIMAIKENKEK 355
           W   S M +++ +++
Sbjct: 340 WDMFSRMQVQDEEKR 354


>gi|152971165|ref|YP_001336274.1| putative transport protein [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238895753|ref|YP_002920489.1| putative transport protein [Klebsiella pneumoniae NTUH-K2044]
 gi|150956014|gb|ABR78044.1| putative transport protein [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238548071|dbj|BAH64422.1| putative transport protein [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 369

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 159/343 (46%), Gaps = 28/343 (8%)

Query: 15  MIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           +I+FI+ ++ +  L  +++ +L A I+     P+ +   ++  E +  LA + T+ ++CL
Sbjct: 13  LIVFIVTLAFFDVLSPYYSAILWAAILAVIFNPVKNKIRTRLGERNG-LAALMTIVIICL 71

Query: 74  FI-VPLLFLFYYGMLEMKELVSKVVLANQHGIP--VPRWLSDIPGGMWASELWTKHL--S 128
            +  PL  +      E+  + SK+   N    P  V    + +PG  WA      H   S
Sbjct: 72  IVFTPLAIILSSLAYELNLVYSKLQ-HNDTQFPTVVASLFAHLPG--WARSFLADHNLDS 128

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG-FSISQQ 187
             Q  + LS+  LK  G  ++   A   G     + +S   M+  LFF  +DG + +   
Sbjct: 129 AQQIQQQLSDAALK--GGQYLAGSAFLIGKGTFGFTVSFGIMLYLLFFLLKDGPYLVLLI 186

Query: 188 LDSL------GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
           L+SL       +HLF  +          V R+T  G   +A+ +G + G A+W+AG+   
Sbjct: 187 LESLPLSSYVKQHLFAKF--------AAVARATVKGTVAVALAQGALGGFAFWIAGLDGS 238

Query: 242 VALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +  G + A +++IP  G+ I +   +IYL   G ++    +  +  I + +VD  LRP L
Sbjct: 239 ILWGALMAFLSLIPAVGSAIIWVPAAIYLFATGQLWQGAFIVGFFVIVIGLVDNILRPLL 298

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           VG   ++P        +GG+   G+ G  IGP++ AL    W 
Sbjct: 299 VGKDTRMPDYLILIATLGGMEIYGINGFVIGPLIAALFIACWN 341


>gi|56461267|ref|YP_156548.1| PerM family permease [Idiomarina loihiensis L2TR]
 gi|56180277|gb|AAV82999.1| Predicted permease PerM family [Idiomarina loihiensis L2TR]
          Length = 348

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 100/204 (49%), Gaps = 8/204 (3%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS---LGEHLFPAYW 200
           +G  F+   A   G     + +S+  MI   FF  RDG  +   L     LG+      +
Sbjct: 139 SGSKFLAEEALSIGQNTFSFIISLSLMIYLTFFLLRDGHLLIDLLVKALPLGDERERKLF 198

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
            K +    +V R+T  G  ++AI +G + G  + L G+P  +  GV+ A +++IP  GA 
Sbjct: 199 TKFA----EVTRATVKGNIVVAIVQGTLGGIIFALLGIPGALLWGVVMAFLSLIPAVGAS 254

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +  VSIYL   GN    T L  +GAI + + D  LRP LVG   KLP     F  +GG
Sbjct: 255 LVWLPVSIYLYATGNWIAGTILVAYGAIVIGLADNVLRPVLVGRDTKLPDYLVLFSTLGG 314

Query: 320 VRTMGLLGLFIGPVLMALIAVIWK 343
           +   G+ G  +GP++ AL  V W 
Sbjct: 315 LSLFGITGFVLGPLVAALFLVFWD 338


>gi|319763353|ref|YP_004127290.1| hypothetical protein Alide_2671 [Alicycliphilus denitrificans BC]
 gi|330825587|ref|YP_004388890.1| hypothetical protein Alide2_3027 [Alicycliphilus denitrificans
           K601]
 gi|317117914|gb|ADV00403.1| protein of unknown function UPF0118 [Alicycliphilus denitrificans
           BC]
 gi|329310959|gb|AEB85374.1| protein of unknown function UPF0118 [Alicycliphilus denitrificans
           K601]
          Length = 352

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 116/245 (47%), Gaps = 6/245 (2%)

Query: 101 QHGIPVPRWLSDIPGGMWASELWTK-HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI 159
            +G  + + L+ +P   W  EL  + HL+    L+    T +      F+   A   G  
Sbjct: 101 NYGAYLQQVLAALPA--WVLELLDRFHLTSMAELQA-RLTAVGAQASQFLATKALDVGQN 157

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
            L + +S   M+  LFF  RDG  ++ ++      L   +  +++R    VIR+T  G  
Sbjct: 158 TLQFIVSFGVMLYLLFFLLRDGPRLAARIRQ-AIPLDTEHKNQLARKFTTVIRATVKGNI 216

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNA 278
           ++A  +G + G  +W+ G+   V  GV+ A ++++P  GA + +  V+IY L  G+   A
Sbjct: 217 VVAAAQGALGGLIFWILGIQGPVMWGVLMAFLSLLPAVGASLIWGPVAIYFLATGSTGQA 276

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             L  +G   + +VD  LRP LVG   K+P        +GG+   GL G  IGPV+ AL 
Sbjct: 277 AILTAYGVGVIGLVDNLLRPLLVGKDTKMPDYVVLISTLGGMALFGLTGFVIGPVIAALF 336

Query: 339 AVIWK 343
              W 
Sbjct: 337 MATWD 341


>gi|316932016|ref|YP_004106998.1| hypothetical protein Rpdx1_0627 [Rhodopseudomonas palustris DX-1]
 gi|315599730|gb|ADU42265.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           DX-1]
          Length = 381

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 121/241 (50%), Gaps = 17/241 (7%)

Query: 107 PRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLS 166
           P W+ D+ G          +L+  Q  + LS   L+  G  ++   A   G    D+ ++
Sbjct: 112 PDWIGDLLG-----RFGVGNLADLQ--QRLSAVLLR--GSQYLAGQALGIGQSTFDFTVN 162

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK---VIRSTFLGMTIIAI 223
           +  M+  LFF  RDG  ++ ++        P      +R++ K   VIR+T  G  +IA+
Sbjct: 163 LFVMVYLLFFLLRDGDLVAGRI----RRATPLGVDHQTRLLDKFTVVIRATVKGNMLIAL 218

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLF 282
            +G + G A+++ G+   +   V+ A ++++P  GA + +  +++YL+  G+I++   L 
Sbjct: 219 IQGSLGGLAFYVLGISGALMWAVVMAFLSLLPAVGAGLVWLPMALYLIFTGSIWHGIGLI 278

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +WGA+ + +VD  LRP LVG   ++P        +GG+   GL G  +GPV+ A+    W
Sbjct: 279 VWGALVIGMVDNVLRPILVGKDTRMPDYVVLISTLGGLEVFGLNGFVVGPVIAAMFIAAW 338

Query: 343 K 343
            
Sbjct: 339 D 339


>gi|330994579|ref|ZP_08318502.1| UPF0118 inner membrane protein ydiK [Gluconacetobacter sp. SXCC-1]
 gi|329758220|gb|EGG74741.1| UPF0118 inner membrane protein ydiK [Gluconacetobacter sp. SXCC-1]
          Length = 390

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 162/342 (47%), Gaps = 26/342 (7%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F   +L A I+ F++WP++     ++  S    A++ T+    + +VPL+ +    + ++
Sbjct: 57  FMTALLWAAILTFSTWPVFMRL--RRGMSLLPAAMVMTLLCALVLVVPLVIVVSNSIADV 114

Query: 90  KELVSKVVLA--NQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQSLKILSETFLKTNGI 146
              +  +V A    H  P+P  ++ IP  G   ++ W K           SE       I
Sbjct: 115 PATLQYIVDAVGTLHLPPLPARVAHIPHFGPEIADKWQK----------WSE---DVGSI 161

Query: 147 DFIPR-FASRFGMIFLDYCLSI----IFMIIAL---FFFYRDGFSISQQLDSLGEHLFPA 198
           D + R +A R G   L   + +      + +AL   FFF+  G  +     ++   +   
Sbjct: 162 DQVVRPYAGRIGQSVLSAMMQLASGMAHLAMALFISFFFWLGGDGLGTTFVAVVRRIAGV 221

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           Y  +I  IV + IR T  G+   AI +G++ G  + +AG+ S V LG ITA +A++P GA
Sbjct: 222 YADRILGIVGRTIRGTVYGILGTAIIQGILTGIGFAIAGISSPVLLGAITAFVAVLPIGA 281

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P+ +   +++LL+  +      L L+G I +   D  +RP  +    +LP+L T  G++G
Sbjct: 282 PLIWIPAAVFLLLTHHPGWGIFLLLYGTIIVSGADHIIRPMFIARGAQLPYLLTVLGVLG 341

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           GV T G LG+F+GPVL+ +   +  E       +   I  + 
Sbjct: 342 GVLTFGGLGIFLGPVLIGVGYTLTAEFAAGDPRSNNPIPDDL 383


>gi|33597100|ref|NP_884743.1| hypothetical protein BPP2512 [Bordetella parapertussis 12822]
 gi|33566551|emb|CAE37807.1| putative exported protein [Bordetella parapertussis]
          Length = 358

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 99/201 (49%), Gaps = 8/201 (3%)

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS---LGEHLFPAYWKKI 203
            FI   A   G     + +    M+  LFF  RDG  +S++L     L EH    + + +
Sbjct: 146 QFIATQAFNIGQDTFQFLIGFGVMLYLLFFLLRDGSQLSRRLRRAVPLDEH----HKQHL 201

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISF 262
            R    VIR+T  G  ++A  +G + G  + + G+   +  GVI A ++++P  GA + +
Sbjct: 202 FRKFTTVIRATVKGNIVVAAAQGALGGVMFSVLGIQGALLWGVIMAFLSLLPAIGAGLIW 261

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             V++Y L+ G I+    L L+G + + +VD  LRP LVG   KLP        +GG+  
Sbjct: 262 APVAVYFLLTGAIWQGVVLILFGVLVIGMVDNVLRPLLVGKDTKLPDYVVLISTLGGMAL 321

Query: 323 MGLLGLFIGPVLMALIAVIWK 343
            GL G  IGP++ AL    W 
Sbjct: 322 FGLNGFVIGPLIAALFVACWD 342


>gi|206578196|ref|YP_002237378.1| hypothetical protein KPK_1525 [Klebsiella pneumoniae 342]
 gi|206567254|gb|ACI09030.1| putative membrane protein [Klebsiella pneumoniae 342]
          Length = 369

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 160/342 (46%), Gaps = 26/342 (7%)

Query: 15  MIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           +I+FI+ ++ +  L  +++ +L A I+     P+ +   ++  E +  LA + T+ ++CL
Sbjct: 13  LIVFIVTLAFFDVLSPYYSAILWAAILAVIFNPVKNKIRTRLGERNG-LAALLTIVIICL 71

Query: 74  FI-VPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHL--SH 129
            +  PL  +      E+  + SK+   + Q    V   ++ +P   WA     +H   S 
Sbjct: 72  IVFTPLAIILSSLAYELNVVYSKLQHNDTQFPTVVASLIAHLPD--WARGFLAEHNLDSA 129

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG-FSISQQL 188
            Q  + LS+  LK+    ++   A   G     + +S   M+  LFF  +DG + +   L
Sbjct: 130 QQIQQQLSDVALKSG--QYLAGSAFLIGKGTFGFTVSFGIMLYLLFFLLKDGPYLVLLTL 187

Query: 189 DSL------GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           +SL       +HLF  +          V R+T  G   +A+ +G + G A+W+AG+   +
Sbjct: 188 ESLPLSSYVKQHLFAKF--------AAVARATVKGTVAVALAQGALGGFAFWVAGLDGSI 239

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             G + A +++IP  G+ I +   +IYL   G ++    +  +  I + +VD  LRP LV
Sbjct: 240 LWGALMAFLSLIPAVGSAIIWVPAAIYLFATGQLWQGAFIVGFFVIVIGLVDNILRPLLV 299

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           G   K+P        +GG+   G+ G  IGP++ AL    W 
Sbjct: 300 GKDTKMPDYLILIATLGGMEIYGINGFVIGPLIAALFIACWN 341


>gi|26988931|ref|NP_744356.1| hypothetical protein PP_2207 [Pseudomonas putida KT2440]
 gi|24983744|gb|AAN67820.1|AE016413_2 membrane protein, putative [Pseudomonas putida KT2440]
          Length = 354

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 103/204 (50%), Gaps = 8/204 (3%)

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD---SLGEHLFPAY 199
           T G   +   A  FG    ++ +S   M+  LFFF RDG  +++++     L EH     
Sbjct: 141 TQGSQVLASQAFSFGQGTFEFLISFGIMMYLLFFFLRDGPEVARRVRMAVPLPEH----Q 196

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GA 258
            +++     +V+R+T  G  ++AI +G + G  +W+  +PS +   V+ A ++++P  GA
Sbjct: 197 KRRLQLKFNRVVRATVKGNVLVAITQGALGGFIFWVLDIPSALVWAVLMAFLSLLPAVGA 256

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            I +  V+ Y L+ G I     L  +G + + +VD  LRP LVG   ++P        +G
Sbjct: 257 GIIWAPVAAYFLLTGAILQGVVLTAFGVLVIGLVDNVLRPILVGKDTRMPDYLILVSTLG 316

Query: 319 GVRTMGLLGLFIGPVLMALIAVIW 342
           G+   GL G  IGP++ AL    W
Sbjct: 317 GLAVFGLNGFVIGPLIAALFVSSW 340


>gi|325983330|ref|YP_004295732.1| hypothetical protein NAL212_2783 [Nitrosomonas sp. AL212]
 gi|325532849|gb|ADZ27570.1| protein of unknown function UPF0118 [Nitrosomonas sp. AL212]
          Length = 362

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 149/335 (44%), Gaps = 19/335 (5%)

Query: 13  RWMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           R +++ I+L+  Y  L  F   ++ A+++  ++WPIY         ++T  +++  V ++
Sbjct: 12  RLVVIAILLIGCYQILHPFIPAIVFAMVVCISTWPIYLQLRRALGGNTTLASLLMIVGMI 71

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPG-GMWASELWTKHLSH 129
            L I+P   L +     +  ++  V V   Q  I  P WL D P  G      W   +S 
Sbjct: 72  LLVIIPSALLAFSLADNVTAIIDAVKVFMQQGSIEPPSWLKDTPFFGEQFIRYWQGLMSG 131

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            + + +L    L+      I  F    G +     L ++F     FFFYRDG ++ Q L 
Sbjct: 132 GKEVGMLLTGLLEP-----IKNFLLNLGNVIGKSLLQMVFAAFIGFFFYRDGETLIQMLH 186

Query: 190 S-----LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA- 243
           +     L   L      +I   V  V+   F      A+ + +     + +AGV    A 
Sbjct: 187 NGVAKLLDGSLGTDPLVQIHNTVTGVVYGIFGS----ALAQAIAAMIGFLIAGVSGSGAF 242

Query: 244 -LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            LG  T  +++IP G  + +  VS++ L +G+   A    LWG   +  +D  +RP+L+ 
Sbjct: 243 LLGSATFFLSVIPMGPSLVWGGVSVWFLYEGSYGWAIFTILWGIFVISSIDNFVRPYLIS 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
               L FL    G  GG+   G +G+FIGP ++A+
Sbjct: 303 RGSNLSFLLVVLGASGGIIAYGFIGIFIGPPILAI 337


>gi|104782535|ref|YP_609033.1| hypothetical protein PSEEN3498 [Pseudomonas entomophila L48]
 gi|95111522|emb|CAK16242.1| conserved hypothetical protein; putative membrane protein
           [Pseudomonas entomophila L48]
          Length = 354

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 103/201 (51%), Gaps = 2/201 (0%)

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           T G  F+   A  FG    ++ +S   M+  LFFF R+G  +++++      L     ++
Sbjct: 141 TEGSQFLAGQAFSFGQGTFEFLVSFGIMLYLLFFFLREGAEVARKVRQ-AVPLPEQQKRR 199

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPIS 261
           +     +V+R+T  G  ++AI +G + G  +W+  +PS +   V+ A ++++P  GA I 
Sbjct: 200 LQLKFKRVVRATVKGNLLVAITQGALGGLIFWVLDIPSALVWAVLMAFLSLLPAVGAGIV 259

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +  V++Y L+ G  +    L  +G + + +VD  LRP LVG   ++P        +GG+ 
Sbjct: 260 WGPVAVYFLLTGATWQGVVLIAFGVLVIGLVDNLLRPILVGKDTRMPDYLVLVSTLGGLA 319

Query: 322 TMGLLGLFIGPVLMALIAVIW 342
             GL G  IGP++ AL    W
Sbjct: 320 VFGLNGFVIGPLIAALFVSSW 340


>gi|146310488|ref|YP_001175562.1| hypothetical protein Ent638_0826 [Enterobacter sp. 638]
 gi|145317364|gb|ABP59511.1| protein of unknown function UPF0118 [Enterobacter sp. 638]
          Length = 369

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 171/363 (47%), Gaps = 33/363 (9%)

Query: 16  IMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           I+ + +VSL F   L  +F+ VL A I+     P+ +   S   E +  LA + T+ ++C
Sbjct: 12  ILILAIVSLAFFDILAPYFSAVLWASILAVIFHPVKNKLRSMMGERNG-LASLLTLVIIC 70

Query: 73  LFI-VPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKH--LS 128
           L +  PL+ +     +E+  + +K+   N Q    V    + +P   WA      H   +
Sbjct: 71  LIVFTPLIVILSSLAIELNVVYTKLQHTNSQFPEVVASLFAHLP--EWARNFLVDHNLDN 128

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG-FSISQQ 187
             Q  + LS+  LK  G  ++   A   G     + +S   MI  LFF  +DG + + Q 
Sbjct: 129 AAQIQQKLSDAALK--GGQYLAGSAFLIGKGTFGFAISFGIMIYLLFFLLKDGPYLVRQI 186

Query: 188 LDSL------GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
           LDSL       +HLF  +          V R+T  G  ++A+ +G++ G A+++AG+   
Sbjct: 187 LDSLPLSDFVKQHLFAKF--------AAVSRATVKGTVVVALVQGILGGIAFYIAGIDGS 238

Query: 242 VALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +  G + A +++IP  G+ I +   +++L     ++    +  +  I + +VD  LRP L
Sbjct: 239 ILWGALMAFLSLIPAVGSAIIWVPAAVFLFATQQLWQGFFIVGFFVIIVGLVDNILRPLL 298

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE---NKEKIS 357
           VG   K+P        +GG+   G+ G  IGP++ AL    W  +I++ ++   N ++I 
Sbjct: 299 VGKDTKMPDYLILISTLGGMEIYGINGFVIGPLIAALFIACW--NILSGRDHAGNSDEID 356

Query: 358 SNF 360
             F
Sbjct: 357 EAF 359


>gi|261319296|ref|ZP_05958493.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261298519|gb|EEY02016.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
          Length = 354

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 158/334 (47%), Gaps = 20/334 (5%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF----YYG 85
           ++  VL A+I+    +P+    +          A ++ +  +CL I+P+L +F      G
Sbjct: 28  YYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAFLSVLMCICLVIIPMLAIFGSLVDEG 87

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL---SHPQSLKILSETFLK 142
               + L S+    N +   + R ++ +P  +   E W K     +       +S   ++
Sbjct: 88  TSLYQRLSSREFDINGY---IARIMAALPESL---EEWLKRFELGTFADWRARISSVVMQ 141

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            + + F  R  S FG   L + +    M+  LFF +RDG  + +++      L   Y ++
Sbjct: 142 GSQL-FAARLVS-FGQNTLQFFIGFGIMLYLLFFLFRDGADVGKKIRR-AIPLSDDYTRQ 198

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPIS 261
                  VIR+T  G  IIAI +G+  G  +WL G+ + +  GVI    +M+P  GA + 
Sbjct: 199 FLEKFTAVIRATVKGNIIIAIIQGMNGGVTFWLLGIEAALLWGVIMTFCSMLPAVGAALV 258

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +T  +++  + G+ ++   L + G + + +VD  LRP LVG   ++P        VGG+ 
Sbjct: 259 WTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLVGKGTRMPDYVVLISTVGGIS 318

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            +G+ G  IGP++ A+    W  S++A +E K++
Sbjct: 319 LIGINGFVIGPLIAAMFIAAW--SLLA-EEQKDQ 349


>gi|149377701|ref|ZP_01895436.1| hypothetical protein MDG893_12430 [Marinobacter algicola DG893]
 gi|149357986|gb|EDM46473.1| hypothetical protein MDG893_12430 [Marinobacter algicola DG893]
          Length = 371

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 155/355 (43%), Gaps = 16/355 (4%)

Query: 13  RWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           R  +  ++ VSL F   +K FF P+  A+ I     P+      +  +    +A++  + 
Sbjct: 8   RTFLAMLVGVSLAFILLMKPFFGPIFWAVAIALIFHPVREYLARRLGDRPNTIALLTLLI 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLS 128
            M + ++P+L L    + E   L  ++     + G  + R +   P     S      L 
Sbjct: 68  CMVIVVIPVLGLVTSLVAEGLSLYQRIQEGQLRPGDYIDRVIQSFPA--IESFFAQFGLD 125

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             +    +   F+   G  F+ + A  FG     + L +  MI   FF  RDG  +   L
Sbjct: 126 FAEVRDRVVSGFV--GGSQFLAKQALGFGQNTFQFFLGLALMIYLAFFLLRDGSKLVDLL 183

Query: 189 DS---LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                LG+      + K +    +V R+T  G  +IA+ +G + G  +W+ G+   +  G
Sbjct: 184 IRALPLGDERERLLFAKFA----EVTRATVKGNLLIAVIQGALGGGIFWILGIQGALLWG 239

Query: 246 VITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           V+ AI++++P  GA + +   ++YL   G + +A  L  +G I + + D  LRP  VG  
Sbjct: 240 VVMAIVSLLPAVGAALVWVPAALYLAATGEMVSAIVLTAFGVIVIGLADNLLRPVFVGRD 299

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            KLP        +GG+   G+ G  +GP++ AL    W   I    E+++  S N
Sbjct: 300 TKLPDYIVLLSTLGGIVMFGINGFVMGPLVAALFMAFWGIFIREFGESEQAPSVN 354


>gi|254711673|ref|ZP_05173484.1| hypothetical protein BpinB_15754 [Brucella pinnipedialis B2/94]
          Length = 352

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 158/334 (47%), Gaps = 20/334 (5%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF----YYG 85
           ++  VL A+I+    +P+    +          A ++ +  +CL I+P+L +F      G
Sbjct: 26  YYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAFLSVLMCICLVIIPMLAIFGSLVDEG 85

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL---SHPQSLKILSETFLK 142
               + L S+    N +   + R ++ +P  +   E W K     +       +S   ++
Sbjct: 86  TSLYQRLSSREFDINGY---IARIMAALPESL---EEWLKRFELGTFADWRARISSVVMQ 139

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            + + F  R  S FG   L + +    M+  LFF +RDG  + +++      L   Y ++
Sbjct: 140 GSQL-FAARLVS-FGQNTLQFFIGFGIMLYLLFFLFRDGADVGKKIRR-AIPLSDDYTRQ 196

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPIS 261
                  VIR+T  G  IIAI +G+  G  +WL G+ + +  GVI    +M+P  GA + 
Sbjct: 197 FLEKFTAVIRATVKGNIIIAIIQGMNGGVTFWLLGIEAALLWGVIMTFCSMLPAVGAALV 256

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +T  +++  + G+ ++   L + G + + +VD  LRP LVG   ++P        VGG+ 
Sbjct: 257 WTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLVGKGTRMPDYVVLISTVGGIS 316

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            +G+ G  IGP++ A+    W  S++A +E K++
Sbjct: 317 LIGINGFVIGPLIAAMFIAAW--SLLA-EEQKDQ 347


>gi|85711221|ref|ZP_01042281.1| Predicted permease PerM family protein [Idiomarina baltica OS145]
 gi|85695134|gb|EAQ33072.1| Predicted permease PerM family protein [Idiomarina baltica OS145]
          Length = 348

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 96/185 (51%), Gaps = 8/185 (4%)

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDS---LGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
           + +++  M+   FF  RDG  + + +     LG+      +KK +    +V R+T  G  
Sbjct: 158 FVMNLGLMLYLTFFLLRDGNKLIRLMVRALPLGDEREHQLFKKFA----EVTRATVKGNI 213

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNA 278
           ++A+ +G + G  + L G+P+ V  GV+ A +++IP  GA I +  VS+YLL  G  F  
Sbjct: 214 VVAMVQGALGGVIFALLGIPAPVLWGVVMAFLSLIPAVGAGIVWLPVSVYLLATGATFEG 273

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             L L+G I + + D  LRP LVG   KLP     F  +GG+   G+ G  IGP++ AL 
Sbjct: 274 IVLVLYGLIIIGLADNALRPLLVGRDTKLPDYVVLFSTLGGLSLFGITGFVIGPLIAALF 333

Query: 339 AVIWK 343
              W 
Sbjct: 334 LAFWD 338


>gi|296445779|ref|ZP_06887732.1| protein of unknown function UPF0118 [Methylosinus trichosporium
           OB3b]
 gi|296256759|gb|EFH03833.1| protein of unknown function UPF0118 [Methylosinus trichosporium
           OB3b]
          Length = 349

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 155/320 (48%), Gaps = 12/320 (3%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F  P+  A I+ + ++P+Y   +       +  A  AT+ ++ + +VP+ FL      ++
Sbjct: 26  FLTPLAWAAILAYATYPVYRRILRASGNRPSLAATFATLLLVVVLVVPVAFLLVRLQSDL 85

Query: 90  KELVSKVVLANQ---HGIPVPRWLSDIPG-GMWASELWTKHLSHPQSLKILSETFLKTNG 145
            E   +  L++Q     I +P  ++  P  G    ++     + P+  +   + +++   
Sbjct: 86  AEAYRE--LSSQFADEPIVLPDAVARFPVVGPALDDMLNTIWNDPERRREQVKEWIEP-- 141

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
             ++   A   GMI       I    IALFFFYRDG  + ++L +    +  A      R
Sbjct: 142 --WMSGLARTLGMIGRSLA-QIALTAIALFFFYRDGALVVEELRAGLRKVVGASADNYVR 198

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTA 264
            +    ++   G+ + A+ +GL+ G  Y + GV + + LG +TA+ A++P  G    +  
Sbjct: 199 AIGATTQAVVSGVIVSALFQGLIAGVGYAVVGVGTPILLGALTAVAALVPFIGTWAVWAP 258

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           V +YLL+ G       L  WG + +  VD  ++P L+     +P +   FG++GG+   G
Sbjct: 259 VGVYLLVVGQTGAGVALLAWGGLVVSWVDNIIKPLLISSAADIPLVIVLFGVLGGLLAFG 318

Query: 325 LLGLFIGPVLMALIAVIWKE 344
            +GLF+GP+++A++  IW+E
Sbjct: 319 FVGLFLGPLILAVLLSIWRE 338


>gi|325274729|ref|ZP_08140770.1| hypothetical protein G1E_15893 [Pseudomonas sp. TJI-51]
 gi|324100130|gb|EGB97935.1| hypothetical protein G1E_15893 [Pseudomonas sp. TJI-51]
          Length = 354

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 104/204 (50%), Gaps = 8/204 (3%)

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD---SLGEHLFPAY 199
           T G   +   A  FG    ++ +    M+  LFFF R+G  +++++     L EH     
Sbjct: 141 TQGSQVLASQAFSFGQGTFEFLIGFGIMMYLLFFFLREGADVARRVRLAVPLPEHQKRRL 200

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GA 258
             K +R+V    R+T  G  ++A+ +G + G  +W+  +PS +  GV+ A+++++P  GA
Sbjct: 201 QLKFNRVV----RATVKGNVLVAVTQGALGGFIFWVLDIPSALVWGVLMALLSLLPAVGA 256

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            I +  V++Y L+ G I     L  +G + + +VD  LRP LVG   ++P        +G
Sbjct: 257 GIVWAPVAVYFLLTGAILPGIILTAFGVLVIGLVDNLLRPILVGKDTRMPDYLILVSTLG 316

Query: 319 GVRTMGLLGLFIGPVLMALIAVIW 342
           G+   GL G  IGP++ AL    W
Sbjct: 317 GLTVFGLNGFVIGPLIAALFMSSW 340


>gi|146282661|ref|YP_001172814.1| hypothetical protein PST_2313 [Pseudomonas stutzeri A1501]
 gi|145570866|gb|ABP79972.1| membrane protein, putative [Pseudomonas stutzeri A1501]
          Length = 337

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 102/200 (51%), Gaps = 2/200 (1%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
            G  F+   A  FG     + +S   M+  LFFF RDG  +  ++      L  A  +++
Sbjct: 126 EGSQFLATKAFSFGQGTFQFLISFFVMLYLLFFFIRDGRELVARIRK-AIPLSDAQKRRL 184

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISF 262
                +V+R+T  G  ++A+ +G + G  + + G+   +  GV+ A ++++P  GA + +
Sbjct: 185 FNKFTRVVRATVKGNIVVAVTQGALGGIIFAVLGISGALLWGVLMAFLSLLPAVGAGLIW 244

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
           T V+IY L+ G I+    L L+G + + +VD  LRP LVG   K+P        +GG+  
Sbjct: 245 TPVAIYFLMTGAIWQGVILTLYGVLVIGLVDNILRPILVGKDTKMPDYVVLISTLGGLAL 304

Query: 323 MGLLGLFIGPVLMALIAVIW 342
            GL G  IGP++ AL    W
Sbjct: 305 FGLNGFVIGPLVAALFISTW 324


>gi|148555776|ref|YP_001263358.1| hypothetical protein Swit_2868 [Sphingomonas wittichii RW1]
 gi|148500966|gb|ABQ69220.1| protein of unknown function UPF0118 [Sphingomonas wittichii RW1]
          Length = 358

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 146/320 (45%), Gaps = 13/320 (4%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           FF  +L  L++     P++   + +    S   A+I  + ++ + I+P  FL   G   +
Sbjct: 35  FFGAILWGLVLALMFSPVHRRILDRMPGRSNVAALITLLIIILIVILPAAFL---GSAMI 91

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGM--WASE-LWTKHLSH-PQSLKILSETFLKTNG 145
           +E +    +     I + R    + G +  WAS  L  + L+    + + +SET   +  
Sbjct: 92  QEFLHVYAMVQSGQIDIARMFEQMTGALPDWASHWLAARGLTDFAAARQQISETL--SGS 149

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ-LDSLGEHLFPAYWKKIS 204
              I   A + G   L+  L +  M+   FF  RDG  ++++ ++S+   L P   + + 
Sbjct: 150 FSAIAAHALQVGQGALNLVLMLGVMLYLTFFLIRDGEELARRVIESI--PLDPDRRRAVI 207

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFT 263
           R    V R+T  G  I+AI +G   G  + L G+   +  G + AI ++IP  G  I + 
Sbjct: 208 RNFTVVTRATIKGSLIVAIVQGFTGGVTFALLGIEGALLWGTMMAIFSLIPAIGCGIVWV 267

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
            V++YL   G +     L + GA+ +  +D  LRP LVG   ++P        +GG++  
Sbjct: 268 PVALYLFATGAVVKGIILVVAGALVIGSIDNVLRPLLVGRDTRMPDYVVLISTLGGLQLF 327

Query: 324 GLLGLFIGPVLMALIAVIWK 343
           G  G  +GPV+ AL    W 
Sbjct: 328 GFHGFIVGPVVAALFIGTWN 347


>gi|313499673|gb|ADR61039.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1]
          Length = 354

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 102/204 (50%), Gaps = 8/204 (3%)

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD---SLGEHLFPAY 199
           T G   +   A  FG    ++ +S   M+  LFFF RDG  +++++     L EH     
Sbjct: 141 TQGSQALASQAFSFGQGTFEFLISFGIMMYLLFFFLRDGPEVARRVRMAVPLPEH----Q 196

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GA 258
            +++     +V+R+T  G  ++AI +G + G  +W   +PS +   V+ A ++++P  GA
Sbjct: 197 KRRLQLKFNRVVRATVKGNVLVAITQGALGGFIFWALDIPSALVWAVLMAFLSLLPAVGA 256

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            I +  V+ Y L+ G I     L  +G + + +VD  LRP LVG   ++P        +G
Sbjct: 257 GIIWAPVAAYFLLTGAILQGVVLTAFGVLVIGLVDNVLRPILVGKDTRMPDYLILVSTLG 316

Query: 319 GVRTMGLLGLFIGPVLMALIAVIW 342
           G+   GL G  IGP++ AL    W
Sbjct: 317 GLAVFGLNGFVIGPLIAALFVSSW 340


>gi|148548739|ref|YP_001268841.1| hypothetical protein Pput_3531 [Pseudomonas putida F1]
 gi|148512797|gb|ABQ79657.1| protein of unknown function UPF0118 [Pseudomonas putida F1]
          Length = 354

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 103/204 (50%), Gaps = 8/204 (3%)

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD---SLGEHLFPAY 199
           T G   +   A  FG    ++ +S   M+  LFFF RDG  +++++     L EH     
Sbjct: 141 TQGSQVLASQAFSFGQGTFEFLISFGIMMYLLFFFLRDGPEVARRVRMAVPLPEH----Q 196

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GA 258
            +++     +V+R+T  G  ++AI +G + G  +W+  +PS +   V+ A ++++P  GA
Sbjct: 197 KRRLQLKFNRVVRATVKGNVLVAITQGALGGFIFWVLDIPSALVWAVLMAFLSLLPAVGA 256

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            I +  V+ Y L+ G I     L  +G + + +VD  LRP LVG   ++P        +G
Sbjct: 257 GIIWAPVAAYFLLTGAILPGVVLTAFGVLVIGLVDNVLRPILVGKDTRMPDYLILVSTLG 316

Query: 319 GVRTMGLLGLFIGPVLMALIAVIW 342
           G+   GL G  IGP++ AL    W
Sbjct: 317 GLAVFGLNGFVIGPLIAALFVSSW 340


>gi|319795203|ref|YP_004156843.1| hypothetical protein Varpa_4567 [Variovorax paradoxus EPS]
 gi|315597666|gb|ADU38732.1| protein of unknown function UPF0118 [Variovorax paradoxus EPS]
          Length = 377

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 163/362 (45%), Gaps = 44/362 (12%)

Query: 5   MLNPQ---GIMRWMIMFIILVSLYFLKGFFAPVL--SALIIGFTSWPIYSSFISKKEESS 59
           M +PQ   G+   ++  + +  ++ L  FF  VL   AL I FT  P+Y  ++ KK    
Sbjct: 1   MNSPQLQRGVFIALLAAVTVAFVWVLLPFFGAVLWGVALAILFT--PLYK-WLLKKMRGK 57

Query: 60  TFLAVIATVSVMCLFIVPL-LFLFYYGMLEMKELVSKVVLANQHGIPV---------PRW 109
              A +AT+++ CLFIV L L +    +++   LV++ + + Q              P+W
Sbjct: 58  PNAAALATLAI-CLFIVILPLAMVGVSLVQEIALVTQNIRSGQINFAAYFQQILDASPQW 116

Query: 110 LSDIP-----GGMWASELWTKHLSHP--QSLKILSETFLKTNGIDFIPRFASRFGMIFLD 162
           L  +      G M A   W   +S    Q+ +I++   L               G    D
Sbjct: 117 LLSLVERFNLGDMAA---WQARISTAAGQASQIIASQALA-------------IGQNTFD 160

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
           + +S   M+  L+F  RDG ++S+ +        P     +++    VIR+T  G   +A
Sbjct: 161 FIVSFFVMLYLLYFLVRDGSTLSKTMRDAVPLAKPHTHYLLNKFT-TVIRATVKGNVAVA 219

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCL 281
           I +G + G A+W  GV   +   V+ A ++++P  GA + +  V+IY L  G+ +    L
Sbjct: 220 IAQGTIGGLAFWFLGVQGALLWAVLMAFLSLLPAVGAALIWGPVAIYFLATGHFWQGGVL 279

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
              G   + +VD  LRP LVG   ++P        +GG+   G+ G  IGPV+ AL    
Sbjct: 280 IFVGVFVIGLVDNILRPVLVGKDTQMPDYIVLMSTIGGMAIFGINGFVIGPVIAALFMAA 339

Query: 342 WK 343
           W 
Sbjct: 340 WS 341


>gi|33593825|ref|NP_881469.1| hypothetical protein BP2885 [Bordetella pertussis Tohama I]
 gi|33600943|ref|NP_888503.1| hypothetical protein BB1958 [Bordetella bronchiseptica RB50]
 gi|33563898|emb|CAE43157.1| putative exported protein [Bordetella pertussis Tohama I]
 gi|33575378|emb|CAE32455.1| putative exported protein [Bordetella bronchiseptica RB50]
          Length = 358

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 8/201 (3%)

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS---LGEHLFPAYWKKI 203
            FI   A   G     + +    M+  LFF  RDG  +S++L     L EH    + + +
Sbjct: 146 QFIATQAFNIGQDTFQFLIGFGVMLYLLFFLLRDGSQLSRRLRRAVPLDEH----HKQHL 201

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISF 262
            R    VIR+T  G   +A  +G + G  + + G+   +  GVI A ++++P  GA + +
Sbjct: 202 FRKFTTVIRATVKGNIAVAAAQGALGGVMFSVLGIQGALLWGVIMAFLSLLPAIGAGLIW 261

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             V++Y L+ G I+    L L+G + + +VD  LRP LVG   KLP        +GG+  
Sbjct: 262 APVAVYFLLTGAIWQGVVLILFGVLVIGMVDNVLRPLLVGKDTKLPDYVVLISTLGGMAL 321

Query: 323 MGLLGLFIGPVLMALIAVIWK 343
            GL G  IGP++ AL    W 
Sbjct: 322 FGLNGFVIGPLIAALFVACWD 342


>gi|120611907|ref|YP_971585.1| hypothetical protein Aave_3249 [Acidovorax citrulli AAC00-1]
 gi|120590371|gb|ABM33811.1| protein of unknown function UPF0118 [Acidovorax citrulli AAC00-1]
          Length = 350

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 109/226 (48%), Gaps = 14/226 (6%)

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
           ASEL  +      S+ + +  F+    IDF        G   L + +S   M+  LFF  
Sbjct: 129 ASELQARL----SSVTVQATQFVGGKAIDF--------GQNTLQFVVSFGIMLYLLFFLL 176

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           RDG +++ ++      L   + ++++     VIR+T  G   +A  +G + G A+W   +
Sbjct: 177 RDGPALAARIRE-ATPLDEGHKRQLATKFTTVIRATVKGNIAVAAAQGALGGLAFWFLAI 235

Query: 239 PSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
            + V  GV+ A ++++P  GA + +  V++YLL  G ++    L  +G   + +VD  LR
Sbjct: 236 QAPVLWGVLMAFLSLLPAVGAGLIWAPVALYLLATGAVWQGVGLAAFGIGVIGLVDNVLR 295

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           P LVG   K+P        +GG+   GL G  IGPV+ AL    W 
Sbjct: 296 PVLVGKDTKMPDYVVLISTLGGMSLFGLTGFVIGPVIAALFIATWD 341


>gi|330882685|gb|EGH16834.1| putative lipoprotein [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 321

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 138/302 (45%), Gaps = 11/302 (3%)

Query: 32  APVLSALIIG----FTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           AP  SALI G    F SWP+        +   +  A++  +  M L   PL++L +    
Sbjct: 25  APFWSALIWGAVLAFASWPLMRLLTRWFKGRESLAALVMCLCWMLLVAAPLVWLGFNLAD 84

Query: 88  EMKELVSKVVLANQHGIPVP-RWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            +++    +      G+P P +WL+ IP  G     LWT       +     +  L   G
Sbjct: 85  HVRDATGLIKDIQVDGLPDPPQWLAGIPLVGERLVALWTTIDQQGAAFMATLKPHLGQVG 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              + R +++ G   L+  LSI+F     FFFYRDG  ++  + SL E L     +    
Sbjct: 145 NWVLAR-SAQIGSGILELTLSIVFA----FFFYRDGPRLAAFVLSLLERLIGDRAQYYLD 199

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
           +V   ++    G+   A  + ++    + +AG+P  + LG++T + ++IP G P+ +   
Sbjct: 200 LVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALVLGILTFLFSLIPMGPPLVWLPA 259

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           + +L+ +G    A  L +WG   +  VD  L+P+L+     LP +    G+ GG+   G 
Sbjct: 260 TAWLVWQGEYGMAIFLGIWGMFIISGVDNVLKPYLISRGGNLPLVIVLLGVFGGLLAFGF 319

Query: 326 LG 327
           +G
Sbjct: 320 IG 321


>gi|89898842|ref|YP_521313.1| hypothetical protein Rfer_0020 [Rhodoferax ferrireducens T118]
 gi|89343579|gb|ABD67782.1| protein of unknown function UPF0118 [Rhodoferax ferrireducens T118]
          Length = 358

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 99/202 (49%), Gaps = 2/202 (0%)

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
             G  F+   A   G I  ++  S+   +   FF  RDG S+++ L      L P + K+
Sbjct: 147 AQGSQFLATQAMGIGQITFEFVTSLFITLYLAFFLIRDGDSVARALRH-AVPLAPEHKKE 205

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPIS 261
           +      VIR+T  G  ++A+ +G + G A+W  GV   +   V+ A ++++P  GA + 
Sbjct: 206 LIGKFTTVIRATVKGNLLVAVIQGALGGIAFWFLGVGGALLWAVLMAFLSLLPAVGAGLV 265

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +  V+IY  + G  +    L  WG + + ++D  LRP LVG   ++P        +GG+ 
Sbjct: 266 WLPVAIYFFLTGATWQGIALCAWGVLVIGLIDNLLRPILVGKDTRMPDYVVMITTLGGMV 325

Query: 322 TMGLLGLFIGPVLMALIAVIWK 343
             G+ G  IGP + A+   +W+
Sbjct: 326 VFGINGFVIGPAIAAMFMAVWE 347


>gi|170721039|ref|YP_001748727.1| hypothetical protein PputW619_1855 [Pseudomonas putida W619]
 gi|169759042|gb|ACA72358.1| protein of unknown function UPF0118 [Pseudomonas putida W619]
          Length = 354

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 8/204 (3%)

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD---SLGEHLFPAY 199
           T G   +   A  FG    ++ +S   M+  LFFF R+G  +++++     L EH     
Sbjct: 141 TQGSQILATQAFSFGQGTFEFLISFGIMLYLLFFFLREGADVARRVRLAVPLPEH----Q 196

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GA 258
            +++     +V+R+T  G  ++AI +G + G  +W+  +PS +   V+ A ++++P  GA
Sbjct: 197 KRRLQLKFNRVVRATVKGNVLVAITQGALGGFIFWVLDIPSALVWAVMMAFLSLLPAVGA 256

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            I +  V+ Y L+ G I     L  +G + + +VD  LRP LVG   ++P        +G
Sbjct: 257 GIIWAPVAAYFLLTGAILQGVILTAFGVLVIGLVDNLLRPILVGKDTRMPDYLILVSTLG 316

Query: 319 GVRTMGLLGLFIGPVLMALIAVIW 342
           G+   GL G  IGP++ AL    W
Sbjct: 317 GLAVFGLNGFVIGPLIAALFMSSW 340


>gi|126665221|ref|ZP_01736204.1| Predicted permease PerM family protein [Marinobacter sp. ELB17]
 gi|126630591|gb|EBA01206.1| Predicted permease PerM family protein [Marinobacter sp. ELB17]
          Length = 378

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 148/338 (43%), Gaps = 16/338 (4%)

Query: 13  RWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           R  +  ++ VS+ F   +K FF P+  A+ I     P+      +  +     A+I    
Sbjct: 8   RAFLAMLVGVSVAFILLMKPFFGPIFWAVAIALIFHPVQLKLARRFGDRPNTNALITLFL 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP-RWLSDIPGGMWASELWTKHLS 128
            M + ++P+L L    + E   L  K+    Q G   P  ++  +     A + +     
Sbjct: 68  CMVIVVIPVLLLVASLVAEGIGLYQKI----QTGDVRPGEYIDQVNQSFPAIQSFLAQFD 123

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S        L  +G  F+ + A   G     + L +  M+   FF  RDG S+ + L
Sbjct: 124 ISFSELRDRTVNLVVSGSQFLGKQALGLGQNTFQFFLGLALMVYLAFFLLRDGVSLVELL 183

Query: 189 DS---LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                LG+      + K +    +V R+T  G  +IAI +G + G  +W+ G+   +  G
Sbjct: 184 IRALPLGDERERLLFAKFA----EVTRATVKGNLLIAIIQGAMGGLIFWILGIEGALLWG 239

Query: 246 VITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           V+ AI++++P  GA + +   +IYL   G++  A  L  +G + + + D  LRP LVG  
Sbjct: 240 VVMAIVSLLPAVGAALVWVPAAIYLAAVGDVVQALILTAFGVVVIGLADNVLRPILVGRD 299

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            KLP        +GG+   G+ G  +GP++ AL    W
Sbjct: 300 TKLPDYIVLLSTLGGLAMFGINGFVMGPLVAALFNAFW 337


>gi|327480919|gb|AEA84229.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 353

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 101/200 (50%), Gaps = 2/200 (1%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
            G  F+   A  FG     + +S   M+  LFFF RDG  +  ++      L  A   ++
Sbjct: 142 EGSQFLATKAFSFGQGTFQFLISFFVMLYLLFFFIRDGRELVARIRK-AIPLSDAQKTRL 200

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISF 262
                +V+R+T  G  ++A+ +G + G  + + G+   +  GV+ A ++++P  GA + +
Sbjct: 201 FNKFTRVVRATVKGNIVVAVTQGALGGIIFAVLGISGALLWGVLMAFLSLLPAVGAGLIW 260

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
           T V+IY L+ G I+    L L+G + + +VD  LRP LVG   K+P        +GG+  
Sbjct: 261 TPVAIYFLMTGAIWQGVILTLYGVLVIGLVDNILRPILVGKDTKMPDYVVLISTLGGLAL 320

Query: 323 MGLLGLFIGPVLMALIAVIW 342
            GL G  IGP++ AL    W
Sbjct: 321 FGLNGFVIGPLVAALFISTW 340


>gi|190410040|ref|YP_001965564.1| hypothetical protein [Sinorhizobium meliloti]
 gi|125631070|gb|ABN47071.1| hypothetical protein [Sinorhizobium meliloti SM11]
          Length = 347

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 146/307 (47%), Gaps = 7/307 (2%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L+ F + +L A +I F++WP+Y         + +  A + T+ V  + + P   +     
Sbjct: 28  LQPFLSAILWAAVICFSTWPVYQRCERAVGGNKSLAAAVMTLLVALVLVAPFAVMVPTLT 87

Query: 87  LEMKELVSKVVLANQHGIPVP-RWLSDIPG-GMWASELWTKHLSHPQSLKILSETFLKTN 144
             +  L++ V    + G P P RW++ +P  G   +  W + L+H  +    S    K  
Sbjct: 88  DNVSNLLTAVNQILEQGPPAPPRWVAGLPVIGENLAAYW-ESLAH--NAPAFSTELKKL- 143

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            I      A   G +     L +   +   FFF+  G  ++  + ++GE       +K+ 
Sbjct: 144 -IGPATNLAVASGAVLGAGLLELGLSVFIAFFFFLHGRRMAAYVRAVGERFAGPRSRKLL 202

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            +V   ++    G+   A+ + ++ G  +W+AGVP  + LG +T +++ +P G P+ + +
Sbjct: 203 TVVGATVKGVIYGLIGTALAQAVLAGIGFWIAGVPQALLLGFLTFVLSFVPIGPPLVWGS 262

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           V+++  ++G ++    +  WG I +  +D  +RP+++G    LP L   FG +GGV   G
Sbjct: 263 VALWFFVQGAVWWGLFVAAWGLILVSSIDNVIRPYVLGKTNNLPVLLGLFGFLGGVVAFG 322

Query: 325 LLGLFIG 331
            +G+F G
Sbjct: 323 FIGIFWG 329


>gi|329894051|ref|ZP_08270036.1| putative permease PerM family [gamma proteobacterium IMCC3088]
 gi|328923223|gb|EGG30543.1| putative permease PerM family [gamma proteobacterium IMCC3088]
          Length = 378

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 156/366 (42%), Gaps = 48/366 (13%)

Query: 2   RETMLNPQGIMRWMIMFIILVSL---YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES 58
           RE  +     +R  I  +I VS+   Y +  FF+ +L A II     P+++  + +    
Sbjct: 6   REPDMQKVIEIRSFIAALIAVSIAFTYLMLPFFSVILWACIIALLFHPLHAKLLDRYPRH 65

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
               A++  ++ + + + P LFL            S  +   + G  + + L     G  
Sbjct: 66  ENIAALVTLLACVLIAVTPALFL-----------ASSFI---KQGTAIYQQLE---SGQL 108

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDF-----------------IPRFASRFGMIFL 161
              LW   +   Q+  ++ E  L+T G D                  +   A   G   L
Sbjct: 109 KPALWIDQIR--QAFPVIDE-LLRTLGFDVAEVKQQLGSLSVEAGKVMASNALLIGQNTL 165

Query: 162 DYCLSIIFMIIALFFFYRDG---FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
            + +S+  M+   FF  RDG     I  +   LG+       +K +    +V R+T  G 
Sbjct: 166 GWLVSLGLMLYLTFFMLRDGARLIPILIRALPLGDERERLLMQKFA----EVTRATIKGS 221

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFN 277
            ++A+ +G + G  +WL  +P  V  GV+  ++++IP  GA + +  V +YLL  GN  +
Sbjct: 222 LVVAMAQGSLGGLIFWLLDLPGPVLWGVVMTVLSLIPVVGASLIWLPVGLYLLATGNTSD 281

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
              L  +GAI + +VD  LRP LVG   KLP        +GG    G+ G  +GP++  L
Sbjct: 282 GIILIAFGAIVIGLVDNILRPILVGRDTKLPDYLVLLSTLGGFTMFGMTGFVLGPLIAVL 341

Query: 338 IAVIWK 343
               W+
Sbjct: 342 FITFWE 347


>gi|296101461|ref|YP_003611607.1| hypothetical protein ECL_01097 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055920|gb|ADF60658.1| hypothetical protein ECL_01097 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 369

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 172/370 (46%), Gaps = 32/370 (8%)

Query: 9   QGIMRWMIMFII-LVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
            G+ +   +FI+ LV+  F   L  +F+ +L A I+     P+ +   +   + +  LA 
Sbjct: 4   NGLTKGFFIFILALVTWAFFDVLSPYFSAILWAAILTVIFNPVKNKLRAALGDRNG-LAS 62

Query: 65  IATVSVMCLFI-VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM--WASE 121
           + T+ ++CL + +PL+ +F    +E+  + +K+    ++    P  ++ I   +  WAS 
Sbjct: 63  LLTIGIICLIVFIPLMVIFSSLAIELNVVYTKL---QENNTQFPEVVASIFNHLPDWASG 119

Query: 122 LWTKH--LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
               H   +  Q  K LS+  L+  G  ++   A   G     + +S   M+  LFF  +
Sbjct: 120 FLADHNLTNAAQIQKKLSDVALQ--GGQYLAGSAFLIGKGTFGFAISFGIMLYLLFFLLK 177

Query: 180 DG-FSISQQLDSL------GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
           DG F + Q LDSL       +HLF  +          V R+T  G  ++A+ +G + G A
Sbjct: 178 DGPFLVRQILDSLPLSDFAKQHLFAKF--------VGVSRATVKGTAVVAVVQGTLGGIA 229

Query: 233 YWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
           + +AG+   +  G + A ++++P  G+ I +   +I+L     I+    +  +  I + +
Sbjct: 230 FAIAGIDGSILWGALMAFLSLVPAVGSAIVWVPAAIFLFATHQIWQGLFIVGFFVIIVGL 289

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE-SIMAIK 350
           VD  LRP LVG   K+P        +GG+   G+ G  IGP++ AL    W   S     
Sbjct: 290 VDNILRPLLVGKDTKMPDYLILISTLGGMELYGINGFVIGPLIAALFIACWNLFSGRDHA 349

Query: 351 ENKEKISSNF 360
            N E++ + F
Sbjct: 350 GNAEELDAAF 359


>gi|312796207|ref|YP_004029129.1| hypothetical protein RBRH_03616 [Burkholderia rhizoxinica HKI 454]
 gi|312167982|emb|CBW74985.1| Hypothetical membrane spanning protein [Burkholderia rhizoxinica
           HKI 454]
          Length = 414

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 167/370 (45%), Gaps = 34/370 (9%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M     N +G  + ++  + L  ++ L  FF  +    I+     P+  +  ++    + 
Sbjct: 28  MDRNTRNQRG-FQVLLYAVSLALVWILLPFFGAIFWGAILAILFQPLQRTLTARLGNRAN 86

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGML---------EMKELVSKVVLANQHGIPV----- 106
            LA +AT+S +C+ +V L      G L         ++K     V L  Q  +       
Sbjct: 87  -LAALATLS-LCVLVVILPVSLMIGTLVQEVSFAYEQIKTGQWNVTLYFQKAVGALPAFA 144

Query: 107 PRWLSDIPGGMWASELWTKHLSHPQSLKI-LSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
             WL+D+             L+  QSL+  L+E   + +   F+   A   G   L + +
Sbjct: 145 QHWLNDV------------GLADMQSLQAKLTEGAARIS--QFVAAQAVEIGQNTLQFAV 190

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
               M+  +FF  RDG +IS+++      L  ++ +K+      V+R+T  G   +A  +
Sbjct: 191 GFGIMLYMVFFLLRDGSAISRRIRE-AVPLADSHKQKLLGKFTTVVRATVKGNIAVAAVQ 249

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLW 284
           GL+ G  +++ G+   +  G + A+++++P  G+ + +   +IY L+ G ++ A  L L+
Sbjct: 250 GLLGGLIFFILGISGSLLWGTLMALLSLLPAIGSALVWGPAAIYFLLAGPLWKAVVLGLF 309

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            ++ +  VD  LRP LVG   KLP        VGG+ T G+ G  IGP++ AL    W  
Sbjct: 310 CSLVIGGVDNILRPILVGKDTKLPDWVVLISTVGGMATFGINGFVIGPLIAALFIACWDI 369

Query: 345 SIMAIKENKE 354
           S++  ++   
Sbjct: 370 SVLIARDETH 379


>gi|162147751|ref|YP_001602212.1| putative inner membrane protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209542376|ref|YP_002274605.1| hypothetical protein Gdia_0192 [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786328|emb|CAP55910.1| putative inner membrane protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209530053|gb|ACI49990.1| protein of unknown function UPF0118 [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 358

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 164/342 (47%), Gaps = 22/342 (6%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA-TVSVMCLFIVPLLFLFYYGMLE 88
           F + +L A I+ F +WP+   FI  +  +    A I  TV    +  +PL  +    + +
Sbjct: 25  FMSALLWAAILTFATWPL---FIRLRRRTGPVTAAIGMTVLSALVVALPLAVVVSTSIAD 81

Query: 89  MK---ELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTK---HLSHPQSLKILSETFL 141
           +    E +++ +    H    P WL+ IP  G   +++WT+    L H + + +     +
Sbjct: 82  LPGTFEGLAETLARLIHLPAPPPWLARIPHFGPDLAKIWTQWATDLGHAERMLLPYTGSI 141

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             + +  + + AS  G++ L   L I F      FF+  G S+     ++   +  +Y  
Sbjct: 142 AQSMLAGLMQVAS--GLVHLGMALFIAF------FFWLGGDSLGGTFSAVIRRIAGSYAD 193

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +I  I+ + IR T  G+   AI +G++ G  + L G+P  V  G+ITA +A++P GAP+ 
Sbjct: 194 RILSIIGRTIRGTVYGILGTAIVQGVLTGLGFALTGLPEPVLFGLITACVAVLPIGAPLI 253

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +   ++ L++  +      L ++G + +   D  +RP  +    +LP+L T  G++GGV 
Sbjct: 254 WIPGALALILTHHPGWGIFLVVYGVLIISGADHIIRPMFISRGAQLPYLLTVLGVLGGVW 313

Query: 322 TMGLLGLFIGPVLMALIAVIWKE---SIMAIKENKEKISSNF 360
           T G LG+F+GPVL+ +   +  E   +      N   I  NF
Sbjct: 314 TFGGLGIFLGPVLLGVGYTLTAEFAANGSGHTGNATPIQENF 355


>gi|262043269|ref|ZP_06016400.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039368|gb|EEW40508.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 341

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 148/326 (45%), Gaps = 27/326 (8%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI-VPLLFLFYYGMLEM 89
           ++ +L A I+     P+ +   ++  E +  LA + T+ ++CL +  PL  +      E+
Sbjct: 2   YSAILWAAILAVIFNPVKNKIRTRLGERNG-LAALMTIVIICLIVFTPLAIILSSLAYEL 60

Query: 90  KELVSKVVLANQHGIP--VPRWLSDIPGGMWASELWTKHL--SHPQSLKILSETFLKTNG 145
             + SK+   N    P  V    + +PG  WA      H   S  Q  + LS+  LK  G
Sbjct: 61  NLVYSKLQ-HNDTQFPTVVASLFAHLPG--WARSFLADHNLDSAQQIQQQLSDAALK--G 115

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG-FSISQQLDSL------GEHLFPA 198
             ++   A   G     + +S   M+  LFF  +DG + +   L+SL       +HLF  
Sbjct: 116 GQYLAGSAFLIGKGTFGFTVSFGIMLYLLFFLLKDGPYLVLLILESLPLSSYVKQHLFAK 175

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-G 257
           +          V R+T  G   +A+ +G + G A+W+AG+   +  G + A +++IP  G
Sbjct: 176 F--------AAVARATVKGTVAVALAQGALGGFAFWIAGLDGSILWGALMAFLSLIPAVG 227

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
           + I +   +IYL   G ++    +  +  I + +VD  LRP LVG   ++P        +
Sbjct: 228 SAIIWVPAAIYLFATGQLWQGAFIVGFFVIVIGLVDNILRPLLVGKDTRMPDYLILIATL 287

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWK 343
           GG+   G+ G  IGP++ AL    W 
Sbjct: 288 GGMEIYGINGFVIGPLIAALFIACWN 313


>gi|148258479|ref|YP_001243064.1| hypothetical protein BBta_7289 [Bradyrhizobium sp. BTAi1]
 gi|146410652|gb|ABQ39158.1| putative membrane protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 353

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 156/340 (45%), Gaps = 25/340 (7%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F+  +L +++      P+Y       ++  +  A    + ++ L I+PL  L      E 
Sbjct: 27  FYGAILWSVVAAVVFAPLYRRLSQAMQQRHSLAAAATVMIIVTLVILPLTLLSVTLAREA 86

Query: 90  KELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL-------SETFL 141
             +  +V    Q G + + R    I  G+     W   +     L IL       S   L
Sbjct: 87  SNVYGRV----QSGELDLVRSFQQILDGL---PDWMARVLDHFGLAILGGVQEKLSSVLL 139

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
           K  G  F+       G     + +++  M+  LFF +RD  ++S+++    +   P   +
Sbjct: 140 K--GSQFLAAQTLDIGQRTFGFLVNLFVMLCLLFFLFRDENTLSKRV----KDAIPLRPE 193

Query: 202 KISRIVPK---VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-G 257
           ++  ++ K   VIR+T  G  ++A+  G + G  + L G+ + +   V+ A ++++P  G
Sbjct: 194 RLDALLLKFTIVIRATVKGNLLVALLLGALGGLMFSLLGINASLLWAVLIAFLSLLPAIG 253

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
           + + +  V++YLL  G I+    L ++GA+ + +VD  LRP LVG   K+P    FF  +
Sbjct: 254 SGLVWVPVAVYLLATGAIWQGVVLIVYGALVIGLVDNLLRPMLVGKDTKMPDYVVFFSTL 313

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           GG+   G+ G  IGPV+ A+    W+   +  + N + I+
Sbjct: 314 GGIEAFGINGFVIGPVIAAMFIAAWETFSVLRQRNDDAIA 353


>gi|193211909|ref|YP_001997862.1| hypothetical protein Cpar_0235 [Chlorobaculum parvum NCIB 8327]
 gi|193085386|gb|ACF10662.1| protein of unknown function UPF0118 [Chlorobaculum parvum NCIB
           8327]
          Length = 368

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 151/333 (45%), Gaps = 19/333 (5%)

Query: 20  ILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +L+S  FL   + F   +L A I    ++P++S F+S   E  +  A++       +  +
Sbjct: 19  LLISALFLAMIRHFLVTILLAGIFAGLAYPLFSRFLSLSGERRSLSAILTLTIFFLIVFM 78

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
           PL+ +F   + +   L   V+   +  +  P  L  +  G     L   H     S  IL
Sbjct: 79  PLVAVFSIVVGQAISLSKTVIPLVRDQLQDPEALPSLISG-----LPFYHDIEKYSDLIL 133

Query: 137 SE--TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                 L   G   I  F++       D  L IIF    +FF  RDG ++  ++    ++
Sbjct: 134 GRIAEVLGNLGTTVISSFSAFTWSALYDIALFIIFWY-TMFFLLRDGHTLMAKI----QN 188

Query: 195 LFPAYWKKISRIVPK---VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
             P       R++ +   V R++  G  IIA+ +G + G A+ +AG+ + V  G I A++
Sbjct: 189 YLPLAENDQKRLLDRFVSVTRASLKGSLIIAVVQGSLAGLAFHVAGIENAVFWGAIMAML 248

Query: 252 AMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +++P  G+P+ +    I     GN   A  L L+ +I +  +D  +RP LVG    +  L
Sbjct: 249 SILPLIGSPLIWVPAVIIQAFSGNYVEAIGLLLFCSIVVGQIDNVMRPILVGRDTSMHEL 308

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             FFG +GG+   GL G  IGPV+ AL   +W 
Sbjct: 309 FIFFGTLGGIGMFGLPGFIIGPVVAALFVTVWD 341


>gi|241763379|ref|ZP_04761434.1| protein of unknown function UPF0118 [Acidovorax delafieldii 2AN]
 gi|241367421|gb|EER61732.1| protein of unknown function UPF0118 [Acidovorax delafieldii 2AN]
          Length = 357

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 155/341 (45%), Gaps = 18/341 (5%)

Query: 13  RWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           R  ++ + LV+L F   L  F   V   +++     P +   + ++   S  LA +AT+ 
Sbjct: 9   RVFLILLTLVTLAFGAILWQFHGAVFWGVVLAILFTPFHRKLL-RRMPGSPNLAALATLG 67

Query: 70  VMCLFIVPL-LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +CL IV L + L    +++    +   + + Q  +   ++L  I   M A   W   L 
Sbjct: 68  -LCLVIVILPMTLISLSLVQEATGIYDRLKSGQ--LNFGQYLQQILDAMPA---WAAGLL 121

Query: 129 HPQSLKILSETFLKTNGI-----DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              +L  L E   K + +      F    A   G   L++ +    M+  LFF  RDG +
Sbjct: 122 DRFNLTTLGELQEKLSSVAVQASQFFATKALSIGQNTLEFVVGFGVMLYLLFFLLRDGSA 181

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           ++ +++     L   + ++++     VIR+T  G  ++A  +G + G  +W+ G+   V 
Sbjct: 182 LAARINR-ATPLDTEHKRQLASKFTTVIRATVKGNIVVAASQGALGGLIFWILGIQGPVL 240

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            GV  A ++++P  GA + +  V++Y L  G ++    L L+G   + +VD  LRP LVG
Sbjct: 241 WGVAMAFLSLLPAVGAGLVWGPVALYFLATGAVWQGVVLALYGVGVIGLVDNILRPLLVG 300

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              K+P        +GG+   GL G  IGP + AL    W 
Sbjct: 301 KDTKMPDYVVLISTLGGMALFGLTGFVIGPAIAALFIASWD 341


>gi|310767844|gb|ADP12794.1| hypothetical protein EJP617_31130 [Erwinia sp. Ejp617]
          Length = 372

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 166/377 (44%), Gaps = 46/377 (12%)

Query: 9   QGIMRWMIMFIILVS----LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           QG+ +   +FI+ ++    L+ L  +F+ +L A I+     P+ S  I K       LA 
Sbjct: 4   QGMSKGFFIFILAITTLGFLHILGPYFSAILWAAILAIIFHPLKSK-IGKYCGDRNGLAS 62

Query: 65  IATVSVMCLFI-VPLLFLFYYGMLEMKELVSKVVLANQHGIPV--PRWLSDIPGGMWASE 121
           + T+ ++CL + +PL  +     +E   L +++  ANQ  +       ++ +P       
Sbjct: 63  MLTLLIICLIVFIPLAVVASSLAVEFNALYNRIQ-ANQTELTTVATSVVNHLPE------ 115

Query: 122 LWTKHLSHPQSLKILSETFLKTNGI-----DFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
            W +H     +L   +    K +G+      F        G     + +    M+  LFF
Sbjct: 116 -WLRHFLAENNLTDANAIQQKLSGVAMKGGQFFAGSLMMIGKSTFSFTIGFGIMLYLLFF 174

Query: 177 FYRDG-FSISQQLDSL------GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
             +DG + +   LD++        HLF  +          V R+T  G   +A+ +G + 
Sbjct: 175 LLKDGAYLVGMALDAIPLSRFVKHHLFVKF--------AAVSRATVKGTVAVAVVQGTLG 226

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
           G A+W AG+   +  G + A +++IP  G+ I +  V I+LL  G +     L  +  + 
Sbjct: 227 GIAFWCAGIQGSILWGSLMAFLSLIPAVGSAIIWLPVVIWLLFSGAMVKGLALTFFFVVV 286

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW-----K 343
           + +VD  LRP LVG   K+P        +GG+   G+ G  IGP++ AL    W     +
Sbjct: 287 IGLVDNILRPLLVGKDTKMPDYLILISTLGGMEIYGINGFVIGPLIAALFISCWNLLSGR 346

Query: 344 ESIMAIKENKEKISSNF 360
           ES    + N ++I S+F
Sbjct: 347 ES----RGNTDEIDSDF 359


>gi|85710071|ref|ZP_01041136.1| membrane protein, putative [Erythrobacter sp. NAP1]
 gi|85688781|gb|EAQ28785.1| membrane protein, putative [Erythrobacter sp. NAP1]
          Length = 400

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 147/339 (43%), Gaps = 23/339 (6%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F  PV+ A +      P+Y   ++K         + A++S++ +F+  LL   + G L +
Sbjct: 46  FVGPVMWAALAAIMFQPLYKWSLTKTRGRRN---IAASLSLLIIFVAVLLPALWIGSLVL 102

Query: 90  KELVSKVVLANQHGIPVPRWLSDI----PGGMWASEL---WTKHLSHPQSLKILSETFLK 142
            E V  +     + I + + ++ I    P  +    L   WT        L    E+ L 
Sbjct: 103 DEAVGVINALQANPIDIAQTVNSIFSILPDSLQRMALENGWTNVSVMQDRL----ESLLG 158

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            +    I + A   G   L + LS    +  LFF  RDG  I + +     H  P   + 
Sbjct: 159 ESA-GLIAQSAVSIGSGALGFFLSFGIGLYVLFFLLRDGSRIGETI----LHSAPIEREI 213

Query: 203 ISRIVPK---VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GA 258
             R+  +   ++R+   G  ++ + +G + G    LAGVPS + LGV+ AI+A+IP  G 
Sbjct: 214 ADRLADRFLGIVRAVIKGSGVVGLVQGTLGGIMLALAGVPSALLLGVLMAILALIPAVGT 273

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            + +    I+L+I G ++    +   G I +  VD  LRP LVG    +P        +G
Sbjct: 274 ALVWAPAGIWLIIAGEVWTGAFVLAAGTIVIASVDNVLRPILVGRDTGIPDWIVLVTTLG 333

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           G+   G  G+ +GP++  L    W        E++E I+
Sbjct: 334 GISLAGFSGIVLGPLVAGLFLASWSILQEQRAEDEEAIA 372


>gi|294101585|ref|YP_003553443.1| protein of unknown function UPF0118 [Aminobacterium colombiense DSM
           12261]
 gi|293616565|gb|ADE56719.1| protein of unknown function UPF0118 [Aminobacterium colombiense DSM
           12261]
          Length = 402

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 96/178 (53%), Gaps = 12/178 (6%)

Query: 166 SIIFMIIALFFFYRDGFSISQQLDS-----LGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
            +I +++A FF  RDG  I   ++      L E    A++ +  +I+  VI     G+T+
Sbjct: 197 QLIVIVVASFFMIRDGHIILDYVNDIVPLPLKEK--EAFFNRAKQILQAVI----YGITL 250

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
            A  +G +    +W  G+PS    G + A++AMIP  G P+ +   +IYL   G I  A 
Sbjct: 251 TAGVQGFLGALGWWYVGLPSPAVFGAVMALLAMIPFIGTPLVWGPGAIYLFYSGQIKEAL 310

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
            L +WG I + +VD  +RP  + G  K   L  F G+VGG+ + G LGLF+GP++++L
Sbjct: 311 ILAIWGLIVVSMVDNFIRPIFISGGGKAHVLIIFIGVVGGLASWGFLGLFLGPLVISL 368


>gi|194334809|ref|YP_002016669.1| hypothetical protein Paes_2012 [Prosthecochloris aestuarii DSM 271]
 gi|194312627|gb|ACF47022.1| protein of unknown function UPF0118 [Prosthecochloris aestuarii DSM
           271]
          Length = 363

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 91/174 (52%), Gaps = 8/174 (4%)

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK---VIRSTFLGMTIIAIGEGLVLG 230
           +FFF RDG  + QQ      +  P      SR++ K   V R+T  G  +I I +G + G
Sbjct: 169 MFFFLRDGRDMLQQ----ALYYMPLNQSDQSRMLDKFTSVTRATIRGTFVIGIIQGTLAG 224

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
            A+ +AG+ S V  G I  ++++IP  G+ + +    +YL   G    AT L ++  I +
Sbjct: 225 LAFQVAGIESAVFWGAIMTVLSVIPVVGSGLVWVPAVLYLYATGENVAATGLLIFCGILV 284

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             +D  LRP LVG   ++  L  FFG +GG+   G+ G  +GP++ AL   +W+
Sbjct: 285 SSIDNILRPVLVGRDTRMHELLIFFGTIGGIGLFGIAGFIVGPIIAALFITVWE 338


>gi|283784810|ref|YP_003364675.1| putative outer membrane protein [Citrobacter rodentium ICC168]
 gi|282948264|emb|CBG87835.1| putative outer membrane protein [Citrobacter rodentium ICC168]
          Length = 370

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 173/372 (46%), Gaps = 36/372 (9%)

Query: 9   QGIMRWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
            G+ +   +F+++V  +     L  +F+ +L A I+    +P+ +   +   + +  LA 
Sbjct: 4   NGLTKGFFLFLLVVVTWAFFDVLSPYFSAILWAAILTVIFYPVKNKLRTALGDRNG-LAS 62

Query: 65  IATVSVMCLFI-VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM--WASE 121
           + T+ ++CL + +PL  +      E+   V  V L N +    P  ++ +   M  WA E
Sbjct: 63  LLTLGIICLIVFIPLALILSSLAFELN--VVYVKLQNNNA-QFPEVIASLFAHMPDWARE 119

Query: 122 LWTKH--LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
               H   S  +  + LSE  LK  G  ++   A   G     + +S   M+  LFF  +
Sbjct: 120 FLADHNLDSAAEIQQKLSEVALK--GGQYLAGSAFLIGKGTFGFAISFGVMLYLLFFLLK 177

Query: 180 DG-FSISQQLDSL------GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
           DG F + Q LDSL       +HLF  +          V R+T  G  ++AI +G + G A
Sbjct: 178 DGPFLVRQILDSLPLSNFVKQHLFAKF--------AGVSRATVKGTVVVAIVQGTLGGIA 229

Query: 233 YWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
           +++AG+   +  G + A +++IP  G+ I +   +I+L     ++    +  +  + + +
Sbjct: 230 FYIAGIEGSILWGALMAFLSLIPAVGSAIVWGPAAIFLFSTQQLWQGFFIVGFFVVVVGL 289

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           VD  LRP LVG   K+P        +GG+   G+ G  IGP++ AL    W  +I++ ++
Sbjct: 290 VDNILRPILVGKDTKMPDYLILITTLGGMEIYGINGFVIGPLVAALFIACW--NILSGRD 347

Query: 352 ---NKEKISSNF 360
              N E++   F
Sbjct: 348 HEGNAEELDKEF 359


>gi|113866712|ref|YP_725201.1| membrane spanning protein/permease [Ralstonia eutropha H16]
 gi|113525488|emb|CAJ91833.1| hypothetical membrane spanning protein/Predictedpermease [Ralstonia
           eutropha H16]
          Length = 385

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 151/354 (42%), Gaps = 36/354 (10%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           SL  L  F   +L   I+ F+SW  Y+          +  A+I  +    + + P ++  
Sbjct: 23  SLLVLAPFTTALLWGAILAFSSWYPYTVLSRWLGNRRSLAALICVLLATVVVLGPFVYAG 82

Query: 83  YYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
                 + EL + V    +HGIP +P WLS +P           +L +  +  I +++ +
Sbjct: 83  ASFSAHLDELSALVDRYREHGIPQLPAWLSSLP-------YVGSYLQNSWNSVINADSEM 135

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSI-------IFMIIALFFFYRDG--------FSISQ 186
             N    + +  +  G + L   LSI          II  FFFY  G          + +
Sbjct: 136 VAN----LRKLIAPVGHMLLGAGLSIGAGLGQLALSIILAFFFYTGGELAIAWLRAGMHR 191

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
                 +HL       +  +V  V+ + F+   +  IG         W+AGVP    LG 
Sbjct: 192 IAGERADHLLELAGSTVKGVVYGVLGTAFIQAVLAGIG--------LWIAGVPGAAILGF 243

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +T  +++IP G P+ +   +++L   G    A  L +WG   + + D  ++P L+     
Sbjct: 244 VTFFLSVIPVGPPLVWLPAALWLYHTGATGWAIFLVVWGVGVVSMADNIVKPLLISKGTG 303

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE-SIMAIKENKEKISSN 359
           +P +    G++GG    G LG+FIGP L+A+   + ++ +I +  E K+ +  +
Sbjct: 304 MPLIWIMLGVLGGALAFGFLGVFIGPTLLAVAYALLRDWTIGSQAEVKQDLKQS 357


>gi|330899208|gb|EGH30627.1| hypothetical protein PSYJA_17246 [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 319

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 140/304 (46%), Gaps = 7/304 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            L+ +  F++ ++   ++ F SWP+        +   +  A++  +  M L   PL++L 
Sbjct: 20  CLWVMAPFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAALVMCLCWMLLVAAPLVWLG 79

Query: 83  YYGMLEMKELVSKVVLANQHGIPVP-RWLSDIP-GGMWASELWTKHLSHPQSLKILSETF 140
           +     +++    +      G+P P +WL+ IP  G     LWT       +     +  
Sbjct: 80  FNLADHVRDATGLIKDIQVDGLPDPPQWLAGIPLVGERLVALWTTIDQQGAAFMATLKPH 139

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           L   G ++I   +++ G   L+  LSI+F     FFFYRDG  ++  + SL E L     
Sbjct: 140 LGQVG-NWILARSAQIGSGILELTLSIVFA----FFFYRDGPRLAAFVLSLLERLIGERA 194

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           +    +V   ++    G+   A  + ++    + +AG+P  + LG++T + ++IP G P+
Sbjct: 195 QYYLDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALVLGILTFLFSLIPMGPPL 254

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +   + +L+ +G    A  L +WG   +  VD  L+P+L+     LP +    G+ GG+
Sbjct: 255 VWLPATAWLVWQGEYGMAIFLGIWGMFIISGVDNVLKPYLISRGGNLPLVIVLLGVFGGL 314

Query: 321 RTMG 324
              G
Sbjct: 315 LAFG 318


>gi|167032838|ref|YP_001668069.1| hypothetical protein PputGB1_1830 [Pseudomonas putida GB-1]
 gi|166859326|gb|ABY97733.1| protein of unknown function UPF0118 [Pseudomonas putida GB-1]
          Length = 354

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 8/204 (3%)

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD---SLGEHLFPAY 199
           T G   +   A  FG    ++ +S   M+  LFFF R+G  +++++     L EH     
Sbjct: 141 TQGSQALASQAFSFGQGTFEFVISFGIMMYLLFFFLREGPEVARRVRLAVPLPEH----Q 196

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GA 258
            +++     +V+R+T  G  ++AI +G + G  +W+  +PS +   V+ A ++++P  GA
Sbjct: 197 KRRLQLKFNRVVRATVKGNVLVAITQGALGGLIFWVLDIPSALVWAVLMAFLSLLPAVGA 256

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            I +  V+ Y L+ G I     L  +G + + +VD  LRP LVG   ++P        +G
Sbjct: 257 GIVWAPVAAYFLLTGAILPGVILTAFGVLVIGLVDNLLRPILVGKDTRMPDYLILVSTLG 316

Query: 319 GVRTMGLLGLFIGPVLMALIAVIW 342
           G+   GL G  IGP++ AL    W
Sbjct: 317 GLAVFGLNGFVIGPLIAALFMSSW 340


>gi|330015775|ref|ZP_08308269.1| hypothetical protein HMPREF9538_05993 [Klebsiella sp. MS 92-3]
 gi|328530551|gb|EGF57419.1| hypothetical protein HMPREF9538_05993 [Klebsiella sp. MS 92-3]
          Length = 369

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 157/342 (45%), Gaps = 26/342 (7%)

Query: 15  MIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           +I+FI+ ++ +  L  +++ +L A I+     P  +    +  E +  LA + T+ ++CL
Sbjct: 13  LIVFIVTLAFFDVLSPYYSAILWAAILAVIFNPDKNKPRPRLGERNG-LAALMTIVIICL 71

Query: 74  FI-VPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHL--SH 129
            +  PL  +      E+  + SK+   + Q    V    + +PG  WA      H   S 
Sbjct: 72  IVFTPLAIILSSLAYELNLVYSKLQHNDTQFPTVVASLFAHLPG--WARSFLADHNLDSA 129

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG-FSISQQL 188
            Q  + LS+  LK  G  ++   A   G     + +S   M+  LFF  +DG + +   L
Sbjct: 130 QQIQQQLSDAALK--GGQYLAGSAFLIGKGTFGFTVSFGIMLYLLFFLLKDGPYLVLLIL 187

Query: 189 DSL------GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           +SL       +HLF  +          V R+T  G   +A+ +G + G A+W+AG+   +
Sbjct: 188 ESLPLSSYVKQHLFAKF--------AAVARATVKGTVAVALAQGALGGFAFWIAGLDGSI 239

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             G + A +++IP  G+ I +   +IYL   G ++    +  +  I + +VD  LRP LV
Sbjct: 240 LWGALMAFLSLIPAVGSAIIWVPAAIYLFATGQLWQGAFIVGFFVIVIGLVDNILRPLLV 299

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           G   ++P        +GG+   G+ G  IGP++ AL    W 
Sbjct: 300 GKDTRMPDYLILIATLGGMEIYGINGFVIGPLIAALFIACWN 341


>gi|260596705|ref|YP_003209276.1| hypothetical protein CTU_09130 [Cronobacter turicensis z3032]
 gi|260215882|emb|CBA28407.1| hypothetical protein CTU_09130 [Cronobacter turicensis z3032]
          Length = 367

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 168/384 (43%), Gaps = 51/384 (13%)

Query: 6   LNPQGIMR-WMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +N + + R + I+ + +VS+ F   +K + + VL A+I+    +P+           +  
Sbjct: 1   MNSKEMSRAFFILILFIVSILFFNLVKPYLSAVLWAVILAVIFYPVKRRLCHMMNGRNNI 60

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD----IPGGM 117
            +++  V +  L  VPL  +    + E   L + +     +    P  L+D    +P   
Sbjct: 61  ASLLTVVLICVLVFVPLAVVASSLVREFNTLYTDL---QANDTTFPTLLADGVRILPD-- 115

Query: 118 WASE-LWTKHLSHPQSL-KILSETFLKTNGIDFIPRFASRFGMIFL--DYCLSIIF---- 169
           WA + L   HL    ++ K +S   LK  G  ++       G IFL      S++     
Sbjct: 116 WAQQMLAENHLDSAAAIQKKISGVALK--GSQYVA------GSIFLISRNTFSVVIGFGI 167

Query: 170 MIIALFFFYRDGFSISQQL-------DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
           M+  LFF  +DG  +   +       D + + LF        R    V R+T  G  ++A
Sbjct: 168 MLYLLFFLLKDGSRLVAVVLNAVPLSDKVKQRLF--------RRFAAVSRATVKGTVVVA 219

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCL 281
           I +GL+ G A++ AG+ + +  G + A ++++P  GA + +    IYL   G I  A  L
Sbjct: 220 IVQGLLGGVAFYFAGIGASILWGSLMAFLSLVPAVGAALIWVPAVIYLFTTGAIIKAVLL 279

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             +  + + + D  LRP LVG  I++P        +GG+   G+ G  +GP++ AL    
Sbjct: 280 TAFFVVVVGLADNLLRPLLVGKDIRMPDWLILLATLGGLEVYGINGFVVGPLIAALFVTC 339

Query: 342 WKE------SIMAIKENKEKISSN 359
           W           A+ ENKE  +S 
Sbjct: 340 WNTFSAGPGRTHALPENKENGASE 363


>gi|187923378|ref|YP_001895020.1| hypothetical protein Bphyt_1381 [Burkholderia phytofirmans PsJN]
 gi|187714572|gb|ACD15796.1| protein of unknown function UPF0118 [Burkholderia phytofirmans
           PsJN]
          Length = 371

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 154/340 (45%), Gaps = 13/340 (3%)

Query: 5   MLNPQGIMRWMIMF--IILV--SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M + Q I R   +F  IILV  SL  L  F   +L   I+ ++SW +Y    +       
Sbjct: 1   MKSDQLIERLAAVFALIILVGGSLLVLAPFTTALLWGAILSYSSWGLYRRLTAALGGRRK 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMW 118
             A +  + ++ + + P ++  +     + E+V+ V    + G+P +P W++ IP  G  
Sbjct: 61  GAATLIVLIILIVVLGPFVYAGFAFGAHVHEIVALVQRLFEAGLPDLPPWVARIPLVGSN 120

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL-FFF 177
               W +  S    L     T     G   +         I + + L ++ + I L FFF
Sbjct: 121 IEAFWERLTSSNSELIAQLRTLAAPAGKWILAA------AIAVTHGLGLLALSIVLAFFF 174

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
           Y  G   +  L++    +       +  +    ++    G+   A+ +G++ G   W+AG
Sbjct: 175 YTGGEGAAAWLNAGMRRIAGERADYLLALAGSTVKGVVYGILGTALVQGILAGFGCWIAG 234

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           VP+   LG+ T  +++IPGG  + +   +I+L   G    A  L +WG + + + D  ++
Sbjct: 235 VPAPALLGLATFFLSVIPGGPVVVWLPAAIWLYHGGATGWAIFLVVWGVLAVGMSDNVIK 294

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           P L+G    +P +    G++GG    G LG+FIGP L+A+
Sbjct: 295 PILIGKNSDMPLILVMLGILGGAFAFGFLGVFIGPTLLAV 334


>gi|306845823|ref|ZP_07478391.1| transmembrane protein [Brucella sp. BO1]
 gi|306273715|gb|EFM55553.1| transmembrane protein [Brucella sp. BO1]
          Length = 352

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 159/334 (47%), Gaps = 20/334 (5%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF----YYG 85
           ++  VL A+I+    +P+    +          A ++ +  +CL I+P+L +F      G
Sbjct: 26  YYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAFLSVLMCICLVIIPMLAIFGSLVDEG 85

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL---SHPQSLKILSETFLK 142
               + L S+    N +   + R ++ +P  +   E W K     +       +S   ++
Sbjct: 86  TSLYQRLSSREFDINSY---IARIMAALPESL---EEWLKRFELGTFADWRARISSVVMQ 139

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            + + F  R  S FG   L + +    M+  LFF +RDG  + +++      L   Y ++
Sbjct: 140 GSQL-FAARLVS-FGQNTLQFFIGFGIMLYLLFFLFRDGADVGKKIRR-AIPLSDDYTRQ 196

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPIS 261
                  VIR+T  G  IIAI +G++ G  +WL G+ + +  GVI    +M+P  GA + 
Sbjct: 197 FLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAALLWGVIMTFCSMLPAVGAALV 256

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +T  +++  + G+ ++   L L G + + +VD  LRP LVG   ++P        VGG+ 
Sbjct: 257 WTPAAVWFFVSGDWWSGAILVLVGVLVIGLVDNLLRPPLVGKGTRMPDYVVLISTVGGIS 316

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            +G+ G  IGP++ A+    W  S++A +E K++
Sbjct: 317 LIGINGFVIGPLIAAMFIAAW--SLLA-EEQKDQ 347


>gi|163857030|ref|YP_001631328.1| hypothetical protein Bpet2718 [Bordetella petrii DSM 12804]
 gi|163260758|emb|CAP43060.1| putative membrane protein [Bordetella petrii]
          Length = 360

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 97/208 (46%), Gaps = 16/208 (7%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL-------DSLGEHLF 196
            G  ++   A   G     + +S   M+  LFF  RDG  +S +L       DS   HL 
Sbjct: 142 RGSQYLATQAFNIGQDTFQFLISFGIMLYLLFFLLRDGSLLSARLRAAIPLSDSRKIHLL 201

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                   R    VIR+T  G   +A  +G + G  +++ G+   V  GV+ A ++++P 
Sbjct: 202 --------RKFTTVIRATVKGNIAVAAAQGALGGVIFYVLGIQGPVLWGVVMAFLSLLPA 253

Query: 257 -GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            GA + +  V++Y L+ G  +    L L+G + + +VD  LRP LVG   KLP       
Sbjct: 254 IGAGLIWVPVAVYFLVTGATWQGVALILYGVLVIGMVDNVLRPLLVGKDTKLPDYVVLIS 313

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            +GG+   GL G  IGP++ AL    W 
Sbjct: 314 TLGGMALFGLNGFVIGPLIAALFITCWD 341


>gi|94312981|ref|YP_586190.1| hypothetical protein Rmet_4053 [Cupriavidus metallidurans CH34]
 gi|93356833|gb|ABF10921.1| conserved hypothetical protein; putative inner membrane protein
           (permease) [Cupriavidus metallidurans CH34]
          Length = 361

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 111/225 (49%), Gaps = 5/225 (2%)

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           LS + L+ +   F+   A   G     + +S   M+  LFF  RDG  +S+++ +    L
Sbjct: 137 LSASALQAS--QFVATRALSIGQNTAQFVISFGIMLYLLFFLLRDGPRLSRKIRT-AVPL 193

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
              Y + + +    V+R+T  G   +A+ +G + G  + + G+   +  GVI A ++++P
Sbjct: 194 SDLYKQHLIQKFTTVVRATVKGNVAVALVQGTLGGGIFAVLGIQGALLWGVIMAFLSLLP 253

Query: 256 G-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             GA + +  V++Y L+ G+      L  +G + + +VD  LRP LVG   ++P      
Sbjct: 254 AVGAGLIWAPVAVYFLLTGSTVTGLVLIGFGVLVIGMVDNVLRPILVGKDTQMPDYVVLI 313

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             +GG+   GL G  IGP++ AL    W  +   I EN + I SN
Sbjct: 314 STLGGMALFGLNGFVIGPLIAALFIACWDLNAHGIDENGD-IGSN 357


>gi|322419533|ref|YP_004198756.1| hypothetical protein GM18_2017 [Geobacter sp. M18]
 gi|320125920|gb|ADW13480.1| protein of unknown function UPF0118 [Geobacter sp. M18]
          Length = 354

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 141/337 (41%), Gaps = 35/337 (10%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P+   LIIG  + P Y+  + +        A    ++V   F++P+  L     +   E 
Sbjct: 32  PLAWGLIIGIATMPHYNRLLHRSPAHPGRCAGAMVLAVAVCFVLPVTALVITAAVNAPEW 91

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF---- 148
             +   A Q    + R  +   G             + Q+L  L + F    GID     
Sbjct: 92  YKQ---AEQLVTTLTRSGTAAMG----------QFPYAQNLTSLVDRF----GIDLAGIG 134

Query: 149 ----------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI-SQQLDSLGEHLFP 197
                     I   A+      +++  +++  +  LFF YRDG  + S  +  L     P
Sbjct: 135 GKIAASSSGIILGLAADLARNMMNFIGTLLIALFILFFIYRDGDRVVSLCIGRLAPD--P 192

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG- 256
              ++ +  +  +  +  +G  +    +G + G  YW+A VP+ +  G +TAI A+IP  
Sbjct: 193 RKAQRFATEIRSITTAVVVGTVLTCAAQGAIAGVGYWVADVPAPIFFGTLTAIAALIPVV 252

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           G  I +  ++ ++ + G+   A  L  W  I +   D  +RP  +G    +  L    G 
Sbjct: 253 GTAIIWVPLAGFMALSGSYLTAALLAGWCLIFVGFADNAIRPLAIGASSDISTLAVVLGA 312

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           + G  +MGLLGL +GPV+ A++  +W +++  ++   
Sbjct: 313 ICGAMSMGLLGLIVGPVIFAILFSMWDDAVAEVEATD 349


>gi|306840623|ref|ZP_07473375.1| transmembrane protein [Brucella sp. BO2]
 gi|306289361|gb|EFM60597.1| transmembrane protein [Brucella sp. BO2]
          Length = 351

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 159/334 (47%), Gaps = 20/334 (5%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF----YYG 85
           ++  VL A+I+    +P+    +          A ++ +  +CL I+P+L +F      G
Sbjct: 26  YYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAFLSVLMCICLVIIPMLAIFGSLVDEG 85

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL---SHPQSLKILSETFLK 142
               + L S+    N +   + R ++ +P  +   E W K     +       +S   ++
Sbjct: 86  TSLYQRLSSREFDINGY---IARIMAALPESL---EEWLKRFELGTFADWRARISSVVMQ 139

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            + + F  R  S FG   L + +    M+  LFF +RDG  + +++      L   Y ++
Sbjct: 140 GSQL-FAARLVS-FGQNTLQFFIGFGIMLYLLFFLFRDGADVGKKIRR-AIPLSDDYTRQ 196

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPIS 261
                  VIR+T  G  IIAI +G++ G  +WL G+ + +  GVI    +M+P  GA + 
Sbjct: 197 FLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAALLWGVIMTFCSMLPAVGAALV 256

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +T  +++  + G+ ++   L L G + + +VD  LRP LVG   ++P        VGG+ 
Sbjct: 257 WTPAAVWFFVSGDWWSGAILVLVGVLVIGLVDNLLRPPLVGKGTRMPDYVVLISTVGGIS 316

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            +G+ G  IGP++ A+    W  S++A +E K++
Sbjct: 317 LIGINGFVIGPLIAAMFIAAW--SLLA-EEQKDQ 347


>gi|86747614|ref|YP_484110.1| hypothetical protein RPB_0488 [Rhodopseudomonas palustris HaA2]
 gi|86570642|gb|ABD05199.1| Protein of unknown function UPF0118 [Rhodopseudomonas palustris
           HaA2]
          Length = 371

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 107/204 (52%), Gaps = 8/204 (3%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
            G  ++   A   G   +D+ +++  M+  LFF  RDG  I+ +L        P    + 
Sbjct: 140 RGSQYLAGQALTIGQSTVDFTVNLFVMLYLLFFLLRDGDLIAGRL----RRGLPLSVDQQ 195

Query: 204 SRIVPK---VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           + ++ K   VIR+T  G  +IA+ +G + G A+++ G+   +   V+ A ++++P  GA 
Sbjct: 196 NLLLNKFTVVIRATVKGNMLIALIQGALGGLAFYVLGIGGALLWAVVMAFVSLLPAVGAG 255

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +  V++YL+  G+++    L  +GA+ + +VD  LRP LVG   ++P        +GG
Sbjct: 256 LVWAPVAVYLIATGSMWQGILLIAYGALVIGMVDNVLRPVLVGKDTRMPDYVVLISTLGG 315

Query: 320 VRTMGLLGLFIGPVLMALIAVIWK 343
           ++  GL G  IGPV+ A+   +W 
Sbjct: 316 LQVFGLNGFVIGPVIAAMFIAVWD 339


>gi|222111100|ref|YP_002553364.1| hypothetical protein Dtpsy_1907 [Acidovorax ebreus TPSY]
 gi|221730544|gb|ACM33364.1| protein of unknown function UPF0118 [Acidovorax ebreus TPSY]
          Length = 352

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 139/299 (46%), Gaps = 12/299 (4%)

Query: 62  LAVIATVSVMCLFIVPL-LFLFYYGMLEMKELVSKVVLANQ--HGIPVPRWLSDIPGGMW 118
           LA +AT+ V CL IV L + L    +++   +  +   + Q   G  + + L+ +P   W
Sbjct: 60  LAALATLGV-CLVIVILPVTLIGASLVQEASVAYERARSGQLNFGAYLQQVLAALPP--W 116

Query: 119 ASELWTK-HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
             EL  + HL+    L+    T +      F+   A   G   L + +S   M+  LFF 
Sbjct: 117 MLELLDRFHLTTRAELQA-RLTTIGAQASQFLATKALDVGQNTLQFVVSFGVMLYLLFFL 175

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            RDG  ++ ++      L   + ++++     VIR+T  G  ++A  +G + G  +WL  
Sbjct: 176 LRDGARLAARIRE-AIPLDARHKEQLAIKFTTVIRATVKGNIVVAAAQGALGGLIFWLLN 234

Query: 238 VPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           +   V  GV+ A ++++P  GA + +  V+IY L  G    A  L  +G   + +VD  L
Sbjct: 235 IQGPVMWGVLMAFLSLLPAVGASLIWGPVAIYFLATGAPGQAVILTAYGVFVIGLVDNVL 294

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           RP LVG   KLP        +GG+   GL G  IGP++ AL    W   + A  +  E+
Sbjct: 295 RPVLVGKDTKLPDYVVLISTLGGMALFGLTGFVIGPMIAALFIATW--DLFAPHDGSER 351


>gi|121594188|ref|YP_986084.1| hypothetical protein Ajs_1821 [Acidovorax sp. JS42]
 gi|120606268|gb|ABM42008.1| protein of unknown function UPF0118 [Acidovorax sp. JS42]
          Length = 381

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 139/299 (46%), Gaps = 12/299 (4%)

Query: 62  LAVIATVSVMCLFIVPL-LFLFYYGMLEMKELVSKVVLANQ--HGIPVPRWLSDIPGGMW 118
           LA +AT+ V CL IV L + L    +++   +  +   + Q   G  + + L+ +P   W
Sbjct: 89  LAALATLGV-CLVIVILPVTLIGASLVQEASVAYERARSGQLNFGAYLQQVLAALP--PW 145

Query: 119 ASELWTK-HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
             EL  + HL+    L+    T +      F+   A   G   L + +S   M+  LFF 
Sbjct: 146 MLELLDRFHLTTRAELQA-RLTTIGAQASQFLATKALDVGQNTLQFVVSFGVMLYLLFFL 204

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            RDG  ++ ++      L   + ++++     VIR+T  G  ++A  +G + G  +WL  
Sbjct: 205 LRDGARLAARIRE-AIPLDARHKEQLAIKFTTVIRATVKGNIVVAAAQGALGGLIFWLLN 263

Query: 238 VPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           +   V  GV+ A ++++P  GA + +  V+IY L  G    A  L  +G   + +VD  L
Sbjct: 264 IQGPVMWGVLMAFLSLLPAVGASLIWGPVAIYFLATGAPGQAVILTAYGVFVIGLVDNVL 323

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           RP LVG   KLP        +GG+   GL G  IGP++ AL    W   + A  +  E+
Sbjct: 324 RPVLVGKDTKLPDYVVLISTLGGMALFGLTGFVIGPMIAALFIATW--DLFAPHDGAER 380


>gi|261340952|ref|ZP_05968810.1| putative membrane protein [Enterobacter cancerogenus ATCC 35316]
 gi|288316812|gb|EFC55750.1| putative membrane protein [Enterobacter cancerogenus ATCC 35316]
          Length = 369

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 158/348 (45%), Gaps = 28/348 (8%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI-VPLLFLFYYG 85
           L  +F+ +L A I+     P+ +   +   E +  LA   T+ ++CL + +PL  +    
Sbjct: 26  LSPYFSAILWAAILTIIFNPVKNKLRTALGERNG-LASFLTLCIICLIVFIPLTVILSSL 84

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGM--WASELWTKH--LSHPQSLKILSETFL 141
            +E+  + +K+    Q+    P  ++ +   +  WAS     H   +  +  K LS+  L
Sbjct: 85  AIELNVVYTKL---QQNNTQFPEVVAGVFNRLPDWASGFLADHDLTNAAEIQKKLSDAAL 141

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG-FSISQQLDSL------GEH 194
           K  G  ++   A   G     + +S   M+  LFF  +DG + + Q LDSL       +H
Sbjct: 142 K--GGQYLAGSAFLIGKGTFGFAISFGIMLYLLFFLLKDGPYLVRQILDSLPLSDFAKQH 199

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           LF  +          V R+T  G  ++A+ +G + G A+ + G+   +  G + A ++++
Sbjct: 200 LFAKF--------VGVSRATVKGTAVVAVVQGTLGGIAFAIVGIDGSILWGALMAFLSLV 251

Query: 255 PG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P  G+ I +   +IYL     I+    +  +  I + +VD  LRP LVG   K+P     
Sbjct: 252 PAVGSAIVWVPAAIYLFATHQIWQGLFIVGFFVIIVGLVDNILRPLLVGKDTKMPDYLIL 311

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKE-SIMAIKENKEKISSNF 360
              +GG+   G+ G  IGP++ AL    W   S    + N E++ + F
Sbjct: 312 ISTLGGMELYGINGFVIGPLIAALFIACWNLFSGRDHEGNAEELDAEF 359


>gi|27904620|ref|NP_777746.1| putative inner membrane protein [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|46397200|sp|Q89AW1|Y117_BUCBP RecName: Full=UPF0118 membrane protein bbp_117
 gi|27904017|gb|AAO26851.1| putative membrane protein [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 368

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 157/337 (46%), Gaps = 10/337 (2%)

Query: 2   RETMLNPQGIMRWMIMFIILVS-LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           RE M  PQ I   + +FI+++S L+ ++ FF     A ++   +WPI+         +  
Sbjct: 5   REGMDLPQVIFSLVFIFIMIISSLWIMRPFFLGFAWASMVVVATWPIFLKLQILLWGNRA 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWA 119
              V+ T S++ +FI+P++ L    +++    V   + +++   P   WL DIP  G+  
Sbjct: 65  CAVVMMTFSLLLVFIIPIVCL-VNSLIDNSTSVISWLSSDKFRFPSLEWLQDIPIIGIKL 123

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              + K L+   +  I           +F    A  FG     + L +IFM+I     Y 
Sbjct: 124 FSSYQKLLNEGGAELITKVQPYMGKTTEFFVIQAGHFG----RFILHLIFMLIFSALLYW 179

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           +G  +   +      L       +  +  + IR+  LG+ + A+ +G++ G    ++G+P
Sbjct: 180 NGEKVQSVIRHFAIRLGSKSGDSVVLLAGQAIRAVALGVVVTALVQGILSGIGLAISGIP 239

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
               L ++  I  ++  G  P+   A+ I+L   G     T L +W  + + I+D  LRP
Sbjct: 240 YSSLLMMLIIIFCLVQLGPLPVLIPAI-IWLYWNGKTTWGTVLLIWSCV-VCILDHILRP 297

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
            L+   + LP +    G++GG+   G++GLFIGPV++
Sbjct: 298 ILIRIGVDLPTVLILSGVIGGLIAFGMIGLFIGPVVL 334


>gi|329908669|ref|ZP_08274912.1| hypothetical protein IMCC9480_3662 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546658|gb|EGF31619.1| hypothetical protein IMCC9480_3662 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 352

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 94/184 (51%), Gaps = 12/184 (6%)

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPK---VIRSTFLGMTIIAIGEGLVLGSAYWL 235
           RDG ++S ++     H  P   ++  ++V K   VIR+T  G  ++A  +G + G  +W 
Sbjct: 177 RDGAALSARI----RHAIPLEREQKKQLVAKFATVIRATVKGNIVVAASQGTLGGLMFWF 232

Query: 236 AGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
            G+   +  GV+ A+++++P  GA + +  V+IY L+ G I+    L  +G + + +VD 
Sbjct: 233 LGIQGALLWGVLMAVLSLLPAIGAALIWGPVAIYFLLTGAIWQGVTLIAFGVLVIGLVDN 292

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            LRP LVG   ++P        +GG+   GL G  +GP + A+    W      +   K+
Sbjct: 293 ILRPVLVGKDTQMPDYVVLISTIGGISVFGLSGFVVGPSIAAMFMAAWT----LLDREKD 348

Query: 355 KISS 358
           ++ S
Sbjct: 349 QVRS 352


>gi|146339666|ref|YP_001204714.1| hypothetical protein BRADO2660 [Bradyrhizobium sp. ORS278]
 gi|146192472|emb|CAL76477.1| conserved hypothetical protein; putative membrane protein
           [Bradyrhizobium sp. ORS278]
          Length = 359

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 80/145 (55%), Gaps = 1/145 (0%)

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIY 268
           VIR+T  G   +A+ +G + G  +W  G+ + +   V+ A M+++P  GA I +  V++Y
Sbjct: 205 VIRATMKGNLAVALAQGALGGLIFWFLGITAPLLWAVVMAFMSLLPAVGAGIVWFPVALY 264

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           LL  G+I++   L  +GA+ + +VD  LRP LVG   K+P        +GG+   GL G 
Sbjct: 265 LLATGSIWHGVILIAYGALVIGLVDNLLRPILVGQDTKMPDYVVLLSTLGGIEVFGLNGF 324

Query: 329 FIGPVLMALIAVIWKESIMAIKENK 353
            IGPV+ A+   +W    +   EN+
Sbjct: 325 IIGPVIAAMFIAVWDMFTVVRSENR 349


>gi|226943150|ref|YP_002798223.1| hypothetical protein Avin_10160 [Azotobacter vinelandii DJ]
 gi|226718077|gb|ACO77248.1| conserved hypothetical protein [Azotobacter vinelandii DJ]
          Length = 364

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 150/312 (48%), Gaps = 25/312 (8%)

Query: 37  ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE-MKELVSK 95
           A ++ F SWP+     ++     +  A + T   + L  VPLL LF + +++ ++EL   
Sbjct: 34  AAVLAFASWPLMRLLTARLNGRESVAAGLLTAGWVILVAVPLL-LFGFNLVDYIRELTGL 92

Query: 96  VVLANQHGIPVP-RWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
           +      G+P P  WL+ +P  G    +LW        +L    + +L   G   + R A
Sbjct: 93  INTLRLEGLPPPPEWLAGMPLFGDELVDLWRTVDQQGLALFATLKPYLGQVGNWLLARSA 152

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL--------GEHLFPAYWKKISR 205
              G + L+  LS++ +    FFFYRDG  + + + SL         EH        + R
Sbjct: 153 KLAGGM-LELALSLVLV----FFFYRDGPRLERFVQSLLTRLIGERAEHYLELVAATVQR 207

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
           +V  VI +      +  IG        +W+AGVP  + LG++T  +++IP G P+++   
Sbjct: 208 VVNGVIGTAAAQSALALIG--------FWIAGVPGALLLGLLTFALSLIPMGPPLAWIPA 259

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           + +L+ +G+   A  L +WG   +  VD  L+P+L+     LP +    G+ GG+   G 
Sbjct: 260 TAWLVWQGDYGYAIFLGIWGMFVISGVDNVLKPYLISRGGNLPLVVVLLGVFGGIYAFGF 319

Query: 326 LGLFIGPVLMAL 337
           +GLF+GP L+A+
Sbjct: 320 MGLFLGPTLLAV 331


>gi|264678266|ref|YP_003278173.1| hypothetical membrane protein [Comamonas testosteroni CNB-2]
 gi|262208779|gb|ACY32877.1| hypothetical membrane protein [Comamonas testosteroni CNB-2]
          Length = 368

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 139/320 (43%), Gaps = 20/320 (6%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN----- 100
           P++   + +     T  A+   +  + + I+PL  +    + E   +  ++   N     
Sbjct: 22  PLHRKLLMRMPNKPTLAALATLLISLVMVILPLSLIGLSLIKETAAIYDRISSGNLSAGS 81

Query: 101 ---QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFG 157
              Q    +P WL+      W  +L    L   Q+   LS   L+ +        A   G
Sbjct: 82  YVEQVFNALPSWLTP-----WMEKLHLGTLEEIQT--KLSNIALQAS--KLAATKAVGLG 132

Query: 158 MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG 217
              L + +    M+  +FF  RDG  +  ++ +    L P + ++++     VIR+T  G
Sbjct: 133 QNTLGFVVGFGVMLYLIFFLLRDGKELVARIWA-ATPLAPEHKRELAIKFITVIRATVKG 191

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIF 276
              +A  +G + G  +WL G+   V   V+ A ++++P  GA + +  V+IY L  G + 
Sbjct: 192 NLAVAAAQGALGGLIFWLLGIQGAVLWAVVMAFLSLLPAVGAGLVWGPVAIYFLATGAVT 251

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
               L  +G + + +VD  LRP LVG   K+P        +GG+   GL G  +GP + A
Sbjct: 252 KGLILAAYGVLVIGLVDNVLRPLLVGKDTKMPDYVVLISTLGGMALFGLSGFVLGPAIAA 311

Query: 337 LIAVIWKESIMAIKENKEKI 356
           L    W E    ++E +EK+
Sbjct: 312 LFMAAW-ELFATMQEQEEKL 330


>gi|288817681|ref|YP_003432028.1| putative permease [Hydrogenobacter thermophilus TK-6]
 gi|288787080|dbj|BAI68827.1| putative permease [Hydrogenobacter thermophilus TK-6]
 gi|308751279|gb|ADO44762.1| protein of unknown function UPF0118 [Hydrogenobacter thermophilus
           TK-6]
          Length = 356

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 165/350 (47%), Gaps = 31/350 (8%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +F   + L  L  F  P+L A+I    ++P++ S +S+   ++T  A++ T+ V+   ++
Sbjct: 16  VFFTFLVLVILTPFLKPILWAVIFSLVAYPLHLS-LSRLLRNNTLSALMVTLLVLTFIVI 74

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA----SELWTKHLSHPQS 132
           P L +      +  E+   ++   Q+       L+D+   +++    ++L T+ +     
Sbjct: 75  PFLIIGLVAAKQSVEITKAIIQYLQN-----HTLTDVLHSLYSLPVVNKLITEEILQRVY 129

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCL---SIIF----MIIALFFFYRDGFSIS 185
             + SE F K     ++ +   + G IF        S+IF     +I+ FF  RDG    
Sbjct: 130 EYMQSEEF-KNTITSYLSKLTQKAGEIFTSMLFATGSVIFKSFVFLISFFFILRDG---- 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS----AYWLAGVPSH 241
           ++         P + + +  ++  + + T L +   +IG  LV       AY + G+   
Sbjct: 185 RRFVEFFARFLPMHKEDLYEVLLTIYK-TILAVVYGSIGVALVQAVLSFIAYTVVGINYS 243

Query: 242 VALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +   +IT I + +P  G    +  ++IY  +   +F    + LWG++ +  VD  LRP +
Sbjct: 244 LLWALITFIASFVPPFGTGFVWVPIAIYTFLNKGLFYGIFMLLWGSLVISTVDNILRPLI 303

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL---IAVIWKESIM 347
           +   IK+P++  FF  VGG+ T G LGLF+GP++      +A+I++  I+
Sbjct: 304 MKKGIKMPYIVLFFSTVGGLLTFGFLGLFLGPIVFTTLFSLAIIYERRIL 353


>gi|270261462|ref|ZP_06189735.1| putative transport protein [Serratia odorifera 4Rx13]
 gi|270044946|gb|EFA18037.1| putative transport protein [Serratia odorifera 4Rx13]
          Length = 370

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 169/356 (47%), Gaps = 26/356 (7%)

Query: 15  MIMFIILVS-LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           +I+FI+  + L  L  +++ VL A+I+     P+ +       + +  ++++ T+ V+CL
Sbjct: 13  LILFIVTAAFLDVLGPYYSSVLWAIILAVIFHPLKNKLKQYLGDRNGLVSLL-TLLVICL 71

Query: 74  FI-VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI----PGGMWASELWTKH-- 126
            +  PL  +     LE   L  K+     +   +P  L+++    PG  WA     +H  
Sbjct: 72  IVFTPLAIIASSLALEFNVLYEKL---QNNNTQLPAMLAEVMQHLPG--WARHFLAEHNL 126

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG-FSIS 185
            S  +  K LS+  LK  G  F+       G    ++ +    M+  LFF  +DG + ++
Sbjct: 127 DSAAEIQKQLSDVALK--GGQFLAGSVFLIGKGTFNFAVGFGIMLYLLFFLLKDGPYLVT 184

Query: 186 QQLDSL--GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
             L++L   EH+    + K +     V R+T  G  ++AI +G + G A+++ G+   + 
Sbjct: 185 LALEALPLSEHVKHHLFVKFA----AVSRATVKGTVVVAIVQGALGGLAFYITGIDGSLL 240

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G + A +++IP  G+ I +   +IY    G ++    L  +  + + +VD  LRP LVG
Sbjct: 241 WGALMAFLSIIPAVGSAIIWVPAAIYFFATGMLWQGAFLVGFFVVIIGLVDNILRPLLVG 300

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
              K+P        +GG+   G+ G  IGP++ AL    W  +I++ ++++E    
Sbjct: 301 KDTKMPDYLILISTLGGMEIYGINGFVIGPLIAALFIACW--NILSGRDSEETTDE 354


>gi|259908241|ref|YP_002648597.1| hypothetical protein EpC_15860 [Erwinia pyrifoliae Ep1/96]
 gi|224963863|emb|CAX55365.1| Putative membrane protein [Erwinia pyrifoliae Ep1/96]
 gi|283478172|emb|CAY74088.1| putative AI-2E family transporter [Erwinia pyrifoliae DSM 12163]
          Length = 372

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 165/373 (44%), Gaps = 38/373 (10%)

Query: 9   QGIMRWMIMFIILVS----LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           QG+ +   +FI+ ++    L+ L  +F+ +L A I+     P+ S  I K       LA 
Sbjct: 4   QGMSKGFFIFILAITTLGFLHILGPYFSAILWAAILAIIFHPLKSK-IGKHCGDRNGLAS 62

Query: 65  IATVSVMCLFI-VPLLFLFYYGMLEMKELVSKVVLANQHGIPV--PRWLSDIPGGMWASE 121
           + T+ ++CL + +PL  +     +E   L +++  ANQ  +       ++ +P       
Sbjct: 63  MLTLLIICLIVFIPLAVVASSLAVEFNALYNRIQ-ANQTELTTVASSVVNHLPE------ 115

Query: 122 LWTKHLSHPQSLKILSETFLKTNGI-----DFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
            W +H     +L   +    K +G+      F        G     + +    M+  LFF
Sbjct: 116 -WLRHFLAENNLTDANAIQQKLSGVAMKGGQFFAGSLMMIGKSTFSFTIGFGIMLYLLFF 174

Query: 177 FYRDG-FSISQQLDSL------GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
             +DG + +   LD++        HLF  +          V R+T  G  ++A+ +G + 
Sbjct: 175 LLKDGAYLVGMALDAIPLSRFVKHHLFVKF--------AAVSRATVKGTVVVAVVQGTLG 226

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
           G A+W AG+   +  G + A +++IP  G+ I +  V I+LL  G +     L  +  + 
Sbjct: 227 GIAFWCAGIQGSILWGSLMAFLSLIPAVGSAIIWLPVVIWLLFSGAMVKGLALTFFFVVV 286

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK-ESIM 347
           + +VD  LRP LVG   K+P        +GG+   G+ G  IGP++ AL    W   S  
Sbjct: 287 IGLVDNILRPLLVGKDTKMPDYLILISTLGGMEIYGINGFVIGPLIAALFISCWNLLSGR 346

Query: 348 AIKENKEKISSNF 360
             + N ++I S+F
Sbjct: 347 DHRGNTDEIDSDF 359


>gi|292488505|ref|YP_003531389.1| putative AI-2E family transporter [Erwinia amylovora CFBP1430]
 gi|292899691|ref|YP_003539060.1| membrane protein [Erwinia amylovora ATCC 49946]
 gi|291199539|emb|CBJ46656.1| putative membrane protein [Erwinia amylovora ATCC 49946]
 gi|291553936|emb|CBA20981.1| putative AI-2E family transporter [Erwinia amylovora CFBP1430]
 gi|312172649|emb|CBX80905.1| putative AI-2E family transporter [Erwinia amylovora ATCC BAA-2158]
          Length = 372

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 165/373 (44%), Gaps = 38/373 (10%)

Query: 9   QGIMRWMIMFIILVS----LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           QG+ +   +FI+ V+    L+ L  +F+ +L A I+     P+ S  I K       LA 
Sbjct: 4   QGMSKGFFIFILAVTTLGFLHILGPYFSAILWAAILAIIFHPLKSK-IRKYCGDRNGLAS 62

Query: 65  IATVSVMCLFI-VPLLFLFYYGMLEMKELVSKVVLANQHGIPV--PRWLSDIPGGMWASE 121
           + T+ ++CL + +PL  +     +E   L +++  ANQ  +       ++ +P       
Sbjct: 63  MLTLLIICLIVFIPLAVVVSSLAVEFNALYNRIQ-ANQTELTTVATSVVNHLPE------ 115

Query: 122 LWTKHLSHPQSLKILSETFLKTNGI-----DFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
            W +H     +L   +    K +G+      F        G     + +    M+  LFF
Sbjct: 116 -WLRHFLAENNLNDANAIQQKLSGVAMKGGQFFAGSLMMIGKSTFSFTIGFGVMLYLLFF 174

Query: 177 FYRDG-FSISQQLDSL------GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
             +DG + +   LD++        HLF  +          V R+T  G  ++A+ +G + 
Sbjct: 175 LLKDGAYLVGMALDAIPLSRFVKHHLFVKF--------AAVSRATVKGTVVVAVVQGTLG 226

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
           G A+W AG+   +  G + A +++IP  G+ I +  V I+LL  G +     L  +  + 
Sbjct: 227 GIAFWCAGIQGSMLWGSLMAFLSLIPAVGSAIIWLPVVIWLLFSGAMVKGLALTFFFVVV 286

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK-ESIM 347
           + +VD  LRP LVG   K+P        +GG+   G+ G  IGP++ AL    W   S  
Sbjct: 287 IGLVDNILRPLLVGKDTKMPDYLILISTLGGMEIYGINGFVIGPLIAALFISCWNLLSGR 346

Query: 348 AIKENKEKISSNF 360
             + N ++I S+F
Sbjct: 347 DHRGNTDEIDSDF 359


>gi|237747231|ref|ZP_04577711.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
 gi|229378582|gb|EEO28673.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
          Length = 365

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 98/189 (51%), Gaps = 7/189 (3%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK---VIRS 213
           G   LD+ +S   M+  LFF  RDG  ++ ++      L P   ++ + ++ K   VIR+
Sbjct: 155 GQNILDFAISFGLMLYLLFFLLRDGNELAARI----RKLIPLANEQKTLLLNKFTGVIRA 210

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
           T  G  ++AI +G + G  +W  G+ + +  G I ++++++P G+ + +  V+IY L  G
Sbjct: 211 TVKGNLVVAIVQGALGGLIFWFLGIEAALLWGAIMSVLSLLPAGSGVIWVPVAIYFLATG 270

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
            +     L  +G + + ++D  LRP LVG   ++P        +GG+   GL G  IGPV
Sbjct: 271 AVLKGVILLAFGVLVIGLIDNFLRPLLVGKDTQMPDYLVLVSTIGGMALFGLNGFVIGPV 330

Query: 334 LMALIAVIW 342
           + AL    W
Sbjct: 331 IAALFITAW 339


>gi|49086714|gb|AAT51373.1| PA2651 [synthetic construct]
          Length = 353

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 92/195 (47%), Gaps = 16/195 (8%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL-------GEHLFPAYWKKISRIVPK 209
           G   LD+ +S   M+  LFF  RDG  + +++            HLF  +          
Sbjct: 155 GQNTLDFVISFGIMLYLLFFLLRDGRVLGRRIKQAVPLSQEHKHHLFAKF--------TT 206

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIY 268
           VIR+T  G   +A  +G + G  +WL G+   +  G + A ++++P  GA + +  V+ Y
Sbjct: 207 VIRATVKGNIAVAATQGALGGLIFWLPGIEGALLWGTLMAFLSLLPAIGAALIWAPVAAY 266

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
            L+ G I+    L L+  + + +VD  LRP LVG   K+P        +GG+   GL G 
Sbjct: 267 FLLTGAIWQGVVLILFCVVVIGLVDNILRPILVGKDTKMPDYVVLISTLGGMALFGLNGF 326

Query: 329 FIGPVLMALIAVIWK 343
            IGP++ AL    W 
Sbjct: 327 VIGPLIAALFMASWD 341


>gi|15597847|ref|NP_251341.1| hypothetical protein PA2651 [Pseudomonas aeruginosa PAO1]
 gi|107102172|ref|ZP_01366090.1| hypothetical protein PaerPA_01003222 [Pseudomonas aeruginosa PACS2]
 gi|218891187|ref|YP_002440053.1| hypothetical protein PLES_24531 [Pseudomonas aeruginosa LESB58]
 gi|254235633|ref|ZP_04928956.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|254241080|ref|ZP_04934402.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|9948721|gb|AAG06039.1|AE004694_2 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|126167564|gb|EAZ53075.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126194458|gb|EAZ58521.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218771412|emb|CAW27179.1| putative exported protein [Pseudomonas aeruginosa LESB58]
          Length = 352

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 92/195 (47%), Gaps = 16/195 (8%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL-------GEHLFPAYWKKISRIVPK 209
           G   LD+ +S   M+  LFF  RDG  + +++            HLF  +          
Sbjct: 155 GQNTLDFVISFGIMLYLLFFLLRDGRVLGRRIKQAVPLSQEHKHHLFAKF--------TT 206

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIY 268
           VIR+T  G   +A  +G + G  +WL G+   +  G + A ++++P  GA + +  V+ Y
Sbjct: 207 VIRATVKGNIAVAATQGALGGLIFWLLGIEGALLWGTLMAFLSLLPAIGAALIWAPVAAY 266

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
            L+ G I+    L L+  + + +VD  LRP LVG   K+P        +GG+   GL G 
Sbjct: 267 FLLTGAIWQGVVLILFCVVVIGLVDNILRPILVGKDTKMPDYVVLISTLGGMALFGLNGF 326

Query: 329 FIGPVLMALIAVIWK 343
            IGP++ AL    W 
Sbjct: 327 VIGPLIAALFMASWD 341


>gi|258405391|ref|YP_003198133.1| hypothetical protein Dret_1267 [Desulfohalobium retbaense DSM 5692]
 gi|257797618|gb|ACV68555.1| protein of unknown function UPF0118 [Desulfohalobium retbaense DSM
           5692]
          Length = 371

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 153/348 (43%), Gaps = 19/348 (5%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           L+ +KGF+ PV   +++     P+Y   +          +VI   S++   ++PL  L  
Sbjct: 27  LWLVKGFWQPVFWGILLAIVFQPLYRQVLRLCHGRQRLGSVITVSSIVLGVVLPLFVLAL 86

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             M E   L  +V L+ +  I  P  L +         L    +   +  +ILS+T L+ 
Sbjct: 87  AVMQESLSLYQQV-LSGKIDIQQPVRLVEQSLPQLVDGLERIGIDFDRLREILSQTALRA 145

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS---LGEHLFPAYW 200
           +   F+     R G   +   +  + M+  L+FF++DG  I   L     LG+      +
Sbjct: 146 S--QFLANHLFRIGQSTVQVLIQTLIMLYLLYFFFKDGQGIVNVLVRTIPLGDRRERLLF 203

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
            + +    +V R+T  G  +I I +G + G  +W+ G+   +  GV+  +++++P  G+ 
Sbjct: 204 NRFA----EVARATIKGTLVIGIVQGGIGGGLFWILGLQGALLWGVLMVLLSILPVVGSA 259

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +    I L+  G       L   G++ + + D  LRP LVG   +LP        +GG
Sbjct: 260 LVWGPAGIILIATGAYLKGGILLATGSVVIGLADNILRPALVGRETRLPDYLILLATLGG 319

Query: 320 VRTMGLLGLFIGPVLMALIAVIW--------KESIMAIKENKEKISSN 359
           +   GL G  IGPV+ AL   +W        K  + A +E ++ +S  
Sbjct: 320 LAVYGLAGFVIGPVVAALFLTVWEMFGLEFGKGDVAAEEEGEKGLSDQ 367


>gi|187478630|ref|YP_786654.1| membrane protein [Bordetella avium 197N]
 gi|115423216|emb|CAJ49747.1| putative membrane protein [Bordetella avium 197N]
          Length = 374

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 93/183 (50%), Gaps = 2/183 (1%)

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
            + +S   M+  LFF  RDG  +S +L      L   Y + + R    V+R+T  G   +
Sbjct: 160 QFLVSFGVMLYLLFFLLRDGPILSSRLLLA-LPLEEEYKRHLFRKFTTVVRATVKGNIAV 218

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATC 280
           A  +G + G  +W+ G+   +  GV+ A ++++P  GA + +  V+IY L+ G I+    
Sbjct: 219 AAIQGALGGVIFWVLGIQGALLWGVVMAFLSLLPAVGAGLIWLPVAIYFLVTGAIWQGVV 278

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           L L+G + + +VD  LRP LVG   KLP        +GG+   GL G  IGP++ AL   
Sbjct: 279 LILFGMLVIGMVDNVLRPVLVGKDTKLPDYVILISTLGGMALFGLNGFVIGPLIAALFVA 338

Query: 341 IWK 343
            W 
Sbjct: 339 CWD 341


>gi|188533650|ref|YP_001907447.1| Conserved hypothetical protein (UPF0118) [Erwinia tasmaniensis
           Et1/99]
 gi|188028692|emb|CAO96554.1| Conserved hypothetical protein (UPF0118) [Erwinia tasmaniensis
           Et1/99]
          Length = 379

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 158/372 (42%), Gaps = 36/372 (9%)

Query: 9   QGIMRWMIMFIILVS----LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           QGI +   +FI+  +     + L  +F+ +L A I+     P+ S  I K       LA 
Sbjct: 4   QGISKGFFIFILAATTLGFFHILGPYFSAILWAAILAIIFHPLKSK-IRKYCRDKNGLAS 62

Query: 65  IATVSVMCLFI-VPLLFLFYYGMLEMKELVSKVVLANQHGIPVP-RWLSDIPGGMWASEL 122
           + T+ ++CL + +PL  +     +E   L S++         V    ++ +P        
Sbjct: 63  LITLFIICLIVFIPLAVVASSLAIEFNALYSRIQGDQTELTTVAASVVNHLPD------- 115

Query: 123 WTKHLSHPQSLKILSETFLKTNGI-----DFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
           W +H     +L   S    K +G+      F        G     + +    M+  LFF 
Sbjct: 116 WLRHFLAENNLNDASAIQQKLSGVAMKGGQFFAGSLMMIGKSTFSFTIGFGIMLYLLFFL 175

Query: 178 YRDG-FSISQQLDSL------GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
            +DG + +   LD++        HLF  +          V R+T  G  ++A+ +G + G
Sbjct: 176 LKDGAYLVGMALDAIPLSRFVKHHLFVKF--------AAVSRATVKGTVVVAVVQGTLGG 227

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
            A+W AG+   +  G + A +++IP  G+ I +  V +Y    G +     L  +  + +
Sbjct: 228 IAFWFAGIQGSILWGSLMAFLSLIPAVGSAIIWLPVVLYFFFSGAMIKGLLLTFFFVVVI 287

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK-ESIMA 348
            +VD  LRP LVG   K+P        +GG+   G+ G  IGP++ AL    W   S   
Sbjct: 288 GLVDNILRPLLVGKDTKMPDYLILISTLGGMEIYGINGFVIGPLIAALFISCWNLLSGRD 347

Query: 349 IKENKEKISSNF 360
            K N +KI S+F
Sbjct: 348 HKGNTDKIDSDF 359


>gi|299533519|ref|ZP_07046896.1| hypothetical membrane protein [Comamonas testosteroni S44]
 gi|298718477|gb|EFI59457.1| hypothetical membrane protein [Comamonas testosteroni S44]
          Length = 359

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 139/320 (43%), Gaps = 20/320 (6%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN----- 100
           P++   + +     T  A+   +  + + I+PL  +    + E   +  ++   N     
Sbjct: 22  PLHRKLLMRMPNKPTLAALATLLISLVMVILPLSLIGLSLIKETAAIYDRISSGNLSAGS 81

Query: 101 ---QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFG 157
              Q    +P WL+      W  +L    L   Q+   LS   L+ +        A   G
Sbjct: 82  YVEQVFNALPSWLTP-----WMEKLHLGTLEEIQTK--LSNIALQAS--KLAATKAVGLG 132

Query: 158 MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG 217
              L + +    M+  +FF  RDG  +  ++ +    L P + ++++     VIR+T  G
Sbjct: 133 QNTLGFVVGFGVMLYLIFFLLRDGKELVARIWA-ATPLAPEHKRELAIKFITVIRATVKG 191

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIF 276
              +A  +G + G  +W+ G+   V   V+ A ++++P  GA + +  V+IY L  G + 
Sbjct: 192 NLAVAAAQGALGGLIFWILGIQGAVLWAVVMAFLSLLPAVGAGLVWGPVAIYFLATGAVT 251

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
               L  +G + + +VD  LRP LVG   K+P        +GG+   GL G  +GP + A
Sbjct: 252 KGLILAAYGVLVIGLVDNVLRPLLVGKDTKMPDYVVLISTLGGMALFGLSGFVLGPAIAA 311

Query: 337 LIAVIWKESIMAIKENKEKI 356
           L    W E    ++E +EK+
Sbjct: 312 LFMAAW-ELFATMQEQEEKL 330


>gi|82701870|ref|YP_411436.1| hypothetical protein Nmul_A0737 [Nitrosospira multiformis ATCC
           25196]
 gi|82409935|gb|ABB74044.1| Protein of unknown function UPF0118 [Nitrosospira multiformis ATCC
           25196]
          Length = 356

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 96/201 (47%), Gaps = 2/201 (0%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
            G  F+   A   G    ++ +S   M+  LFF  RDG +++ ++      L   + + +
Sbjct: 142 RGSQFVATHALSLGQNAFEFLVSFGIMLYLLFFLLRDGDNLAAKIKQ-AMPLTMEHKRHL 200

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISF 262
           S     VIR+T  G   +A  +G + G  ++  G+   +  G + A +++IP  GA + +
Sbjct: 201 SSKFTTVIRATVKGNVAVAAIQGALGGVVFYFLGIQGALLWGFMMAFLSLIPAVGAGLIW 260

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             V+IY L  G ++  T L  +G   + +VD  LRP LVG   K+P        +GG+  
Sbjct: 261 IPVAIYFLFTGAVWQGTVLIAFGVFVIGLVDNLLRPVLVGRDTKMPDYVVLISTLGGLVL 320

Query: 323 MGLLGLFIGPVLMALIAVIWK 343
            GL G  IGPV+ AL    W 
Sbjct: 321 FGLNGFVIGPVIAALFMSAWD 341


>gi|296120548|ref|YP_003628326.1| hypothetical protein Plim_0276 [Planctomyces limnophilus DSM 3776]
 gi|296012888|gb|ADG66127.1| protein of unknown function UPF0118 [Planctomyces limnophilus DSM
           3776]
          Length = 423

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 107/194 (55%), Gaps = 4/194 (2%)

Query: 153 ASRFGMI--FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
           +S +G+I   +++ + +   ++ L+FF  DG  I     +L   + P Y +++     KV
Sbjct: 167 SSTWGIIGTLINFFIQLTVCLLGLYFFLADGPRILHGAQNL-IPIQPEYQQQVFDQFTKV 225

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYL 269
            RS  +G  + A+G+G+ +  A  + G+     +G++T + AM+P  GA   +  +SIYL
Sbjct: 226 TRSVVMGTLVAAVGQGIAMSLAVGVLGIGHIFVIGMVTTVAAMVPMIGAAGVYVPMSIYL 285

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +G+ F A  LFL+G + +  +D  +R + +   +++  L  F  ++GG+   GL G+F
Sbjct: 286 ATQGHYFTAAGLFLFGFLVISSIDNVVRAYTLSSNVQMHPLLGFVSILGGLEAFGLWGIF 345

Query: 330 IGPVLMALIAVIWK 343
           +GP++ +++  + K
Sbjct: 346 LGPMIASVLYALAK 359


>gi|71909670|ref|YP_287257.1| hypothetical protein Daro_4061 [Dechloromonas aromatica RCB]
 gi|71849291|gb|AAZ48787.1| Protein of unknown function UPF0118 [Dechloromonas aromatica RCB]
          Length = 351

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 144/327 (44%), Gaps = 9/327 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSS-FISKKEESSTFLAVIATVSVMCL 73
           +++ +I+  +  L  F   VL A ++   +W  Y+   + +     T  A + T++++ +
Sbjct: 15  LVVLLIIGCITVLLPFIGAVLFAFVVWMCTWRFYAEKLLPRLGGRDTLGASLMTLALVLV 74

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV--PRWLSDIPG-GMWASELWTKHLSHP 130
            ++P++FL          L+  +    + G+P   P WLS +P  G      W +  S+ 
Sbjct: 75  TLLPMIFLAGSLANGTDNLIDFIKPYVEQGLPANPPAWLSALPFFGTEIDSTWHRLASNR 134

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           + L       +         +F    G I  +  L +  ++   FF YRDG +IS  L  
Sbjct: 135 EELNATVRQLVAPA-----RQFVLALGGIAANGLLQLALVLFVTFFLYRDGAAISHALYV 189

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
               L     + +       +    LG+   A  +G V    + +AGVP  + LG  T  
Sbjct: 190 GARKLGGDLGENMLDKARGTVVGVMLGIVGTAAAQGTVAMIGFLIAGVPQAMLLGFATFF 249

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           ++MIP G P+ +   + +L   G    A  + ++G   +  +D  ++P L+     L  L
Sbjct: 250 LSMIPVGPPLIWGGAAAWLYSDGQTGWAIFMVIYGLFGISSIDNFVKPILIAYGAGLSIL 309

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMAL 337
               G++GGV   G +G+F+GPVL+AL
Sbjct: 310 LIALGVLGGVLVFGFIGIFLGPVLLAL 336


>gi|148264677|ref|YP_001231383.1| hypothetical protein Gura_2633 [Geobacter uraniireducens Rf4]
 gi|146398177|gb|ABQ26810.1| protein of unknown function UPF0118 [Geobacter uraniireducens Rf4]
          Length = 365

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 147/324 (45%), Gaps = 21/324 (6%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA-TVSVMCLFIVPLLFL 81
           S + L+ FF  ++ A +I  T+WP+    + K+      LAV A TV+++ +FIVP    
Sbjct: 27  SFWILRPFFTALVWATMIVVTTWPLMLG-VQKRLRGKRALAVTAMTVALLLVFIVP---- 81

Query: 82  FYYGMLEMKELVSKVV-----LANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKI 135
           F   ++ + E   ++V     LA     P P W+  +P  G   +  W  H         
Sbjct: 82  FTLAIISIIERSDEIVGWSKSLATFTMPPPPEWVEQLPLAGPKLAARW--HYLTTVGQAE 139

Query: 136 LSETFL--KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           LSE         + ++   A   GM+ + + L++I   +     + +G   +  +     
Sbjct: 140 LSERLAPHAKEIVSWLVTRAGNVGMMIVQFLLTVIISAV----LFANGEKAASGICLFAR 195

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            L     +    +  K IR   LG+ + A+ + L+ G    +AG+P+   L V+  I+ +
Sbjct: 196 RLGDRNGEDAVILAAKAIRGVALGVVVTAVIQSLLAGIGLVVAGIPAPGLLTVVIFILCV 255

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
              G  +    V ++L         T + +WG I +  +D  +RP L+     LP L  F
Sbjct: 256 AQVGPGLVLIPVIVWLYWVDQALWGTAMIVWGII-VGTIDNFIRPVLIKKGADLPLLLIF 314

Query: 314 FGLVGGVRTMGLLGLFIGPVLMAL 337
            G++GG+   G++GLFIGPV++A+
Sbjct: 315 AGVIGGLIAFGVIGLFIGPVMLAV 338


>gi|154243797|ref|YP_001409370.1| hypothetical protein Xaut_4931 [Xanthobacter autotrophicus Py2]
 gi|154162919|gb|ABS70134.1| protein of unknown function UPF0118 [Xanthobacter autotrophicus
           Py2]
          Length = 351

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 146/336 (43%), Gaps = 33/336 (9%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF- 82
           L+ L  ++  +L A+I+     P+               A ++ ++ +C+ ++P   +  
Sbjct: 23  LWLLSPYYGAILWAVILAILFDPLQRGLERWLGGRRNLAAALSVLACICVVVIPGTLILA 82

Query: 83  --------YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
                    Y  +  +E     +LA   G+        +P  +W + L    L     L+
Sbjct: 83  ALANEAASLYTRIGTREFDPGTMLAQLQGV--------LPSFVWRA-LAALDLGDMAQLQ 133

Query: 135 ILSETFLKTNGIDFIPRFASR---FGMIFLDYCLSIIFMIIALFFFYRDGFSIS---QQL 188
               +FL    ++F    A+R    G     + +S+  M+  LFF +RDG +++   ++ 
Sbjct: 134 TRLTSFL----LEFSQTLANRAIIIGQNTAQFVISLGVMLYLLFFLFRDGVALAASIRKA 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             LG H      +K +     V+++T  G   IA  +G + G  + + G+ + +  GV+ 
Sbjct: 190 SPLGAHETDQLLEKFT----SVVKATVKGNVTIAAIQGAIGGVTFGMLGIQAALLWGVLM 245

Query: 249 AIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A+++++P  GA + +   + YLL+ G       L   G + +  VD  LRP LVG    L
Sbjct: 246 AVLSLLPAVGAGLVWVPAAAYLLLTGAYLKGAILLAIGTLVISTVDNVLRPALVGKGTML 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           P        VGG+  +G+ G  +GP+++AL    W 
Sbjct: 306 PDYAVLISTVGGLSLIGMNGFVLGPLIVALFVAAWS 341


>gi|311693484|gb|ADP96357.1| protein belonging to uncharacterized protein family UPF0118 [marine
           bacterium HP15]
          Length = 371

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 105/220 (47%), Gaps = 8/220 (3%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS---LGEHLFPAYW 200
            G  F+ R A   G     + L +  M+   FF  RDG ++ + +     LG+      +
Sbjct: 139 GGSQFLGRQALGVGQNTFQFFLGLALMVYLAFFLLRDGRALVELMIRALPLGDERERLLF 198

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
            K +    +V R+T  G  +IAI +G + G  +W+ G+   +  GV+ AI++++P  GA 
Sbjct: 199 AKFA----EVTRATVKGNLLIAIIQGALGGLIFWILGISGALLWGVVMAIVSLLPAVGAA 254

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +   +IYL   G++  A  L  +G + + + D  LRP LVG   KLP        +GG
Sbjct: 255 LVWVPAAIYLAAVGDVVEAVVLTAFGVVVIGLADNLLRPVLVGRDTKLPDYIVLLSTLGG 314

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +   G+ G  +GP++ AL    W   I    E   + +++
Sbjct: 315 IVMFGINGFVMGPLVAALFMAFWGIFIREFSEEAHRPAAS 354


>gi|218506533|ref|ZP_03504411.1| putative permease protein [Rhizobium etli Brasil 5]
          Length = 81

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/52 (78%), Positives = 44/52 (84%)

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           LVGGPIKLPFLPTFFGLVGGV+TMG LGLFIGPVLMALI  IW+E I   + 
Sbjct: 2   LVGGPIKLPFLPTFFGLVGGVKTMGFLGLFIGPVLMALIVAIWREWIHEARN 53


>gi|91974818|ref|YP_567477.1| hypothetical protein RPD_0338 [Rhodopseudomonas palustris BisB5]
 gi|91681274|gb|ABE37576.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           BisB5]
          Length = 365

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 170/367 (46%), Gaps = 46/367 (12%)

Query: 13  RWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSF-----ISKKEESSTFLAV 64
           R+ I+ +++ S+ F   L   ++ VL  ++I     P+Y          +   + T +A+
Sbjct: 7   RFFILLLLVASIGFGWILLPLYSAVLWGVVIAILFAPLYRQLNRAFGFRRNLAALTTVAI 66

Query: 65  IATVSVMCLFIV---------PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
           I T+ ++ + ++          +      G L+M + + K VLA       P W+S +  
Sbjct: 67  IVTMVILPISLIGAALAQEARAMFLRIESGNLDMLQYL-KQVLAEP-----PAWISGV-- 118

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
                     +LS  Q  + LS   ++  G  ++   A   G   ++  +++  M+  LF
Sbjct: 119 ---LERFSIGNLSDLQ--ERLSAVLMR--GSQYLAGQAIGIGQGTVEIVINLGVMVYLLF 171

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK---VIRSTFLGMTIIAIGEGLVLGSA 232
           F  RDG  ++ ++        P   ++ S+++ K   VIR+T  G  +IA+ +G + G  
Sbjct: 172 FLLRDGDLLAARI----RRAVPLSVEQESQLLRKFTVVIRATVKGNMLIALIQGALGGVM 227

Query: 233 YWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
           +++ GV   +  GV+ A ++++P  GA + +  V++YLL  G+I+    L  +G + +  
Sbjct: 228 FYILGVNGALLWGVVMAFLSLLPAVGAGLVWLPVALYLLGTGSIWQGVALIAFGTMVIGT 287

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW------KES 345
           VD  LRP LVG   ++P        +GG++  GL G  IGPV+ A+    W      +E+
Sbjct: 288 VDNVLRPVLVGKDTRMPDYVVLISTLGGIQVFGLNGFVIGPVIAAIFIAAWDIYSASREA 347

Query: 346 IMAIKEN 352
              I E 
Sbjct: 348 AAGIGET 354


>gi|225873136|ref|YP_002754595.1| hypothetical protein ACP_1510 [Acidobacterium capsulatum ATCC
           51196]
 gi|225791352|gb|ACO31442.1| putative membrane protein [Acidobacterium capsulatum ATCC 51196]
          Length = 353

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 137/288 (47%), Gaps = 25/288 (8%)

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           LF+   G++    L+++++   Q+ + +   LS+   G   + +      HPQ   +L  
Sbjct: 68  LFIVAIGIILPGALLARIL--GQYAVAIGAALSN---GAVEAAIRQALNHHPQLAALLQH 122

Query: 139 --TFLK-TNGIDFIPRFASRFGMIFLDYCLS----IIFMIIALFFFYRDGFSISQQLDSL 191
              FL   N  +    F S   +  L   ++    I+ M+  LFF YRD  +  + L S+
Sbjct: 123 GSRFLTWNNAAERAGTFLSAHAINLLSNSIAALTQIVVMLFLLFFLYRDSRAAVRALYSV 182

Query: 192 GEHLFPAYWKKISRIVPKV---IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                P   K+   +V  +   IR+TFLG   +A  +G+V G  + +  V     LG++T
Sbjct: 183 ----LPMQQKEALMLVTSMEGTIRATFLGHLAVAAIQGIVAGIVFAILRVTGAAPLGMLT 238

Query: 249 AIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A+ AM+P  GA + +  V++YL + G +  A  L + GA+ +  +D  L P LVG  ++ 
Sbjct: 239 AVAAMVPSFGAYVVWLPVAVYLGLAGRLIPAILLIVIGALIISTLDNLLYPLLVGAQLRQ 298

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVL----MALIAVIWKESIMAIKE 351
                   L+GG+   G+ GL +GPVL    MAL+  IW E   A  E
Sbjct: 299 HPAIILLALLGGIWMFGIAGLVLGPVLFSVAMALLR-IWHERSQAGVE 345


>gi|116050638|ref|YP_790543.1| hypothetical protein PA14_29820 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296388888|ref|ZP_06878363.1| hypothetical protein PaerPAb_12095 [Pseudomonas aeruginosa PAb1]
 gi|313107690|ref|ZP_07793872.1| putative exported protein [Pseudomonas aeruginosa 39016]
 gi|115585859|gb|ABJ11874.1| putative exported protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310880374|gb|EFQ38968.1| putative exported protein [Pseudomonas aeruginosa 39016]
          Length = 352

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 92/195 (47%), Gaps = 16/195 (8%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL-------GEHLFPAYWKKISRIVPK 209
           G   LD+ +S   M+  LFF  RDG  + +++            HLF  +          
Sbjct: 155 GQNTLDFVISFGIMLYLLFFLLRDGRVLGRRIKQAVPLSQEHKHHLFAKF--------TT 206

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIY 268
           VIR+T  G   +A  +G + G  +W+ G+   +  G + A ++++P  GA + +  V+ Y
Sbjct: 207 VIRATVKGNIAVAATQGALGGLIFWVLGIEGALLWGTLMAFLSLLPAIGAALIWAPVAAY 266

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
            L+ G I+    L L+  + + +VD  LRP LVG   K+P        +GG+   GL G 
Sbjct: 267 FLLTGAIWQGVVLILFCVVVIGLVDNILRPILVGKDTKMPDYVVLISTLGGMALFGLNGF 326

Query: 329 FIGPVLMALIAVIWK 343
            IGP++ AL    W 
Sbjct: 327 VIGPLIAALFMASWD 341


>gi|326386812|ref|ZP_08208432.1| hypothetical protein Y88_2706 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208731|gb|EGD59528.1| hypothetical protein Y88_2706 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 386

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 112/252 (44%), Gaps = 16/252 (6%)

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
           RWLSD+        L    L+ P++L+      L   G+  I       G   L   L++
Sbjct: 146 RWLSDL-------GLGDLGLADPETLRQRITRGL-AGGLQAIAPQILNVGQGALGLFLTL 197

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK---VIRSTFLGMTIIAIG 224
             M+   FF  RDG  I++++    E   P    +  R++ +   V+R+T  G   IA+ 
Sbjct: 198 GVMLYLTFFLLRDGRGIAERI----ERALPLPALQRRRLLSEFVSVVRATVKGSMTIAVV 253

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFL 283
           +G + G  +W+ G+P  +  G+   + ++ P  G    +   SIYLL  G ++    LFL
Sbjct: 254 QGGIGGFTFWMLGLPGALLWGLAMGVFSLFPAVGTGFIWVPASIYLLATGAVWKGVILFL 313

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            G   +  +D  +RP LVG   ++P        +GG    G  G  +GPV+ AL   +W 
Sbjct: 314 CGFFVISTIDNVIRPILVGRDTQMPDYIVLISTLGGFNLFGFNGFVLGPVIAALFLSVWD 373

Query: 344 ESIMAIKENKEK 355
                +++  E 
Sbjct: 374 IFGRGVQDEAEN 385


>gi|146307480|ref|YP_001187945.1| hypothetical protein Pmen_2457 [Pseudomonas mendocina ymp]
 gi|145575681|gb|ABP85213.1| protein of unknown function UPF0118 [Pseudomonas mendocina ymp]
          Length = 362

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 145/315 (46%), Gaps = 7/315 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + L  F++ +  A ++ F SWP+        +   +  A I T   + L   PL++L + 
Sbjct: 22  WVLAPFWSALFWAAVLAFASWPLMRLLTQLLKGRLSLAAGILTCGWVILVAGPLIWLGFN 81

Query: 85  GMLEMKELVSKVVLANQHGIPVP-RWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLK 142
               +K+  + +      G+P P  WL+ +P  G   + LW        +       +L 
Sbjct: 82  LADHIKDANALIKDLQVEGLPPPPAWLTGLPLVGERLAALWMTIDQQGAAFFASLRPYLG 141

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
             G   + R A   G +       ++     +FFFYRDG  ++  +  L E L       
Sbjct: 142 QVGNWLLARSAQLGGGMLELGLSLVL-----VFFFYRDGPRLAVFVHGLLERLIGERADH 196

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
              +V   ++    G+   A  +GL+    +W+AGVP  + LG++T +++++P G P+ +
Sbjct: 197 YLELVAGTVQRVVNGVIGTAAAQGLLALIGFWIAGVPGAIVLGILTFVLSLVPMGPPLVW 256

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              + +L+ +G+   A  L +WG   +  VD  L+P+L+     LP +    G+ GG+  
Sbjct: 257 IPATAWLVWQGDYGFALFLGVWGMFVISGVDNILKPYLISRGGNLPLVVVLLGVFGGLLA 316

Query: 323 MGLLGLFIGPVLMAL 337
            G +GLF+GP L+A+
Sbjct: 317 FGFMGLFLGPTLLAV 331


>gi|218516479|ref|ZP_03513319.1| putative permease protein [Rhizobium etli 8C-3]
          Length = 161

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 74/125 (59%), Gaps = 1/125 (0%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           RW+++ I+   +YF  GF  PVL+AL+IGF SWP+Y   +++   ++T  A IA + ++ 
Sbjct: 34  RWLLVLIVAAGVYFFYGFLVPVLAALVIGFASWPLYRKLLARVGGNTTIAATIAIIMIVT 93

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQ 131
             ++P+ F   Y   E++  ++  + AN+ G   P W++ +P  G +  ELWTK++  P 
Sbjct: 94  FLVIPIGFAATYTTGEVRTWLAWAIHANRSGASTPGWIAALPFAGPYLDELWTKYIGSPG 153

Query: 132 SLKIL 136
           +L  L
Sbjct: 154 ALGEL 158


>gi|152988070|ref|YP_001347913.1| hypothetical protein PSPA7_2549 [Pseudomonas aeruginosa PA7]
 gi|150963228|gb|ABR85253.1| membrane protein, putative [Pseudomonas aeruginosa PA7]
          Length = 352

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 16/190 (8%)

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSL-------GEHLFPAYWKKISRIVPKVIRST 214
           D+ +S   M+  LFF  RDG  + +++            HLF  +          VIR+T
Sbjct: 160 DFVISFGIMLYLLFFLLRDGRVLGRRIKQAVPLSQEHKHHLFAKF--------TTVIRAT 211

Query: 215 FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKG 273
             G   +A  +G + G  +WL G+   +  G + A ++++P  GA + +  V+ Y L+ G
Sbjct: 212 VKGNIAVAATQGALGGLIFWLLGIEGALLWGTLMAFLSLLPAIGAALIWAPVAAYFLLTG 271

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
            I+    L L+  + + +VD  LRP LVG   K+P        +GG+   GL G  IGP+
Sbjct: 272 AIWQGVVLILFCVVVIGLVDNILRPILVGKDTKMPDYVVLISTLGGMALFGLNGFVIGPL 331

Query: 334 LMALIAVIWK 343
           + AL    W 
Sbjct: 332 IAALFMASWD 341


>gi|158424265|ref|YP_001525557.1| hypothetical protein AZC_2641 [Azorhizobium caulinodans ORS 571]
 gi|158331154|dbj|BAF88639.1| putative membrane protein [Azorhizobium caulinodans ORS 571]
          Length = 388

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 8/183 (4%)

Query: 165 LSIIFMIIALFFFYRDGFSIS---QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
           +S+  M+  LFF +RDG S++   ++   L  H   + + K S     V+++T  G  II
Sbjct: 200 VSLGVMVYVLFFLFRDGASLALAIRRTSPLSPHHTESLFAKFS----DVLKATVKGNVII 255

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATC 280
           A+ +GL+ G A+W  G+ + +  GV  A+++++P  GA + +   + YL++ G       
Sbjct: 256 ALVQGLIGGLAFWGLGIGAPLLWGVSMAVLSLVPAVGAALVWGPTAAYLMLSGQYLKGAI 315

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           L   G   + ++D  LRP LVG   +LP        +GG+   G+ G  IGP++ A+   
Sbjct: 316 LLGIGIFVISMIDNLLRPPLVGKGTRLPDYMVLVSTLGGISLFGVNGFVIGPLIAAMFVA 375

Query: 341 IWK 343
           IW 
Sbjct: 376 IWS 378


>gi|283833290|ref|ZP_06353031.1| putative membrane protein [Citrobacter youngae ATCC 29220]
 gi|291070927|gb|EFE09036.1| putative membrane protein [Citrobacter youngae ATCC 29220]
          Length = 369

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 163/352 (46%), Gaps = 31/352 (8%)

Query: 9   QGIMRWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
            G+ +   +FI+ V  +     L  +F+ +L A I+     P+ +   S   E +  LA 
Sbjct: 4   NGLTKGFFIFILAVVTWAFFDVLSPYFSAILWAAILTTIFNPVKNRLRSALGERNG-LAS 62

Query: 65  IATVSVMCLFI-VPLLFLFYYGMLEMKELVSKVVLANQHGIP--VPRWLSDIPGGMWASE 121
           + T++++CL + +PL+ +     +E+  + +K+   N    P  V   LS +PG  WA  
Sbjct: 63  LITIAIICLIVFIPLMVILSSLAIELNVVYTKLQ-QNDTQFPEVVTSILSYLPG--WARG 119

Query: 122 LWTKH-LSHPQSL-KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              +H L +   + K LS   L+  G  ++   A   G     + +S   M+  LFF  +
Sbjct: 120 FLAEHNLDNAAEIQKKLSNIALQ--GGQYLAGSAFLIGKGTFGFAISFGIMLYLLFFLLK 177

Query: 180 DG-FSISQQLDSL------GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
           DG + + Q LDSL       +HLF  +          V R+T  G  ++A+ +G++ G A
Sbjct: 178 DGPYLVRQILDSLPLSDFAKQHLFAKF--------VGVTRATVKGTAVVALVQGILGGIA 229

Query: 233 YWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
           + +  +   V  G + A ++++P  G+ I +   +I+L     ++    +  +  I + +
Sbjct: 230 FAIVDIDGSVLWGALMAFLSLVPAVGSAIVWVPAAIFLFATHQLWQGLFIVGFFVIIVGL 289

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           VD  LRP LVG   K+P        +GG+   G+ G  IGP++ AL    W 
Sbjct: 290 VDNILRPLLVGKDTKMPDYLILITTLGGMEIYGINGFVIGPLIAALFITCWN 341


>gi|157370292|ref|YP_001478281.1| hypothetical protein Spro_2050 [Serratia proteamaculans 568]
 gi|157322056|gb|ABV41153.1| protein of unknown function UPF0118 [Serratia proteamaculans 568]
          Length = 373

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 166/356 (46%), Gaps = 19/356 (5%)

Query: 15  MIMFIILVS-LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           +I+FI+  + L  L  +++ VL A+I+     P+         E +  ++++ TV+V+CL
Sbjct: 13  LILFIVTAAFLDVLGPYYSSVLWAIILAVIFHPVKQKLKQYLGERNGLVSLL-TVAVICL 71

Query: 74  FI-VPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKH-LSHP 130
            +  PL  +     +E+  + +K+   N Q  + +   L  +PG  WA    T+H L + 
Sbjct: 72  IVFTPLAIIASSLAIELNVVYTKLQGNNAQFPVVLADTLRVLPG--WARHFLTEHNLDNA 129

Query: 131 QSL-KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG---FSISQ 186
             + K LS+  L+  G  ++       G    ++ +    M+  LFF  +DG    +++ 
Sbjct: 130 AEIQKKLSQVALQ--GGQYLAGSVFLIGKGTFNFAVGFGVMLYLLFFLLKDGPYLVNLTL 187

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           Q   L EH+    + K +     V R+T  G  ++A  +G + G A+++ G+   +    
Sbjct: 188 QALPLSEHVKHHLFVKFA----AVSRATVKGTVVVAAVQGALGGLAFYITGIEGSLLWAA 243

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           + A +++IP  G+ I +   +IY    G ++    L  +  + + +VD  LRP LVG   
Sbjct: 244 LMAFLSIIPAVGSAIIWVPAAIYFFATGMLWKGLFLVGFFVVIIGLVDNILRPLLVGKDT 303

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK-ESIMAIKENKEKISSNF 360
           K+P        +GG+   G+ G  IGP++ AL    W   S     E  ++I  +F
Sbjct: 304 KMPDYLILISTLGGMEIYGINGFVIGPLIAALFIACWNILSGRDSAETTDEIDEDF 359


>gi|310815720|ref|YP_003963684.1| hypothetical protein EIO_1241 [Ketogulonicigenium vulgare Y25]
 gi|308754455|gb|ADO42384.1| putative membrane protein [Ketogulonicigenium vulgare Y25]
          Length = 374

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 148/336 (44%), Gaps = 15/336 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           M++ + +  ++ +  F+  VL A+I+     P++   +       +  A  +T++ +C+ 
Sbjct: 14  MLIIVTIAFVWLMLPFYGAVLWAIILAILFNPLHRRLVRGLGGRRSLAAAFSTLACICIV 73

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM---WASELWTKHLSHPQ 131
           ++P   +      E   L ++V   +   I +   L  +  GM       L   +LS   
Sbjct: 74  VIPGSMVLAALAREAGSLYARVSAPDFDAISI---LERVHAGMPSYLVEALSAFNLSEFD 130

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS---QQL 188
            ++     FL  +    +   A   G       + +  M+  LFF +RDG  ++   ++ 
Sbjct: 131 QIQTRLTGFLG-DAAQTVATGALNIGQSTAQLVIGLGVMLYVLFFMFRDGSQLAIIIRRA 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L ++      +K + +V   +R    G  IIA+ +G + G  + L G+ +    GV+ 
Sbjct: 190 SPLTDYQTEHVLRKFTTVVKYTVR----GNVIIAVIQGAIGGITFLLLGIEAAFLWGVLM 245

Query: 249 AIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A+++++P  GA + ++  + YL + G +     L   G + +  +D  LRP LVG   KL
Sbjct: 246 AVLSLLPAVGAFLVWSPAAAYLFLSGQVIQGFILVAVGVVIISTIDNILRPPLVGQGTKL 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           P        +GG+   G+ G  IGP++ AL   +W 
Sbjct: 306 PDYMVLVSTLGGLALFGVNGFVIGPLIAALFVALWS 341


>gi|50119081|ref|YP_048248.1| hypothetical protein ECA0120 [Pectobacterium atrosepticum SCRI1043]
 gi|49609607|emb|CAG73040.1| putative membrane protein [Pectobacterium atrosepticum SCRI1043]
          Length = 438

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 83/365 (22%), Positives = 174/365 (47%), Gaps = 19/365 (5%)

Query: 3   ETMLNPQGIMR-WMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEES 58
           E ++N +G+ + + I+ + +V+L F   L  +++ +L A ++     P+ S    K  + 
Sbjct: 37  EIVVNIKGLTKGFFILILFVVTLAFFDILAPYYSAILWAAVLAIIFHPLKSKIRQKLNDR 96

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGM 117
           +   +++  + +  +  +PL  +    ++E+  + +++  +N Q  + +      +P   
Sbjct: 97  NGLASLLTVLIIFLIVFIPLGIIVSSLVVEINGVYTRLQDSNTQFPVVLAELFQHLP--K 154

Query: 118 WASELWTKHLSHPQSLKILSE-TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
           WA    T+H +   + KI  E + +   G  ++       G     + +    M+  LFF
Sbjct: 155 WARHFLTEH-NLDNAAKIQQELSQVALKGGQYLAGSVLLIGKGTFTFFIGFGVMLYLLFF 213

Query: 177 FYRDG-FSISQQLDSL--GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
             +DG + ++  L+SL    H+      K +     V R+T  G  ++AI +G + G A+
Sbjct: 214 LLKDGSYLVNLILESLPLSTHVKHHLLVKFA----AVSRATVKGTVVVAIVQGTLGGIAF 269

Query: 234 WLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            +AG+   +  G + A +++IP  G+ I +   +I+L     ++ A  +  +  + + +V
Sbjct: 270 SIAGIEGSLLWGSLMAFLSLIPAVGSAIIWVPAAIFLFATDMLWQAIFIVAFFVLVIGVV 329

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           D  LRP LVG   K+P        +GG+   G+ G  IGP++ AL    W  +I++ ++N
Sbjct: 330 DNILRPLLVGKDTKMPDYLILIATLGGMEIYGINGFVIGPLIAALFIACW--NILSGRDN 387

Query: 353 KEKIS 357
           +E I 
Sbjct: 388 QENIE 392


>gi|90580617|ref|ZP_01236422.1| putative permease [Vibrio angustum S14]
 gi|90438275|gb|EAS63461.1| putative permease [Photobacterium angustum S14]
          Length = 361

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 168/374 (44%), Gaps = 50/374 (13%)

Query: 13  RWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
            W+++  + V+ +     ++ +  P++ A II     P++   ++     +   A+++  
Sbjct: 11  HWLLIIALFVAAFASYKLIEPYLGPIVLAFIISLLFAPLHKRLLALMPTRANTAAMLSCF 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  + ++PLL +F   ++     VSK            +W++   GG    EL+    +
Sbjct: 71  VLTVIIVIPLLVVFS-SIVHQGTTVSKESY---------QWITS--GG--PKELF----A 112

Query: 129 HPQSLKILSETFLKTNGIDFIPRF--------ASRFGMIFLDYCLSII-----------F 169
           HP + K+L      +   DF P+         AS+ G   ++    I+            
Sbjct: 113 HPYAQKVLFYIDKYSPFHDFDPQVIIQKIATTASQVGSQAINISARILGDATSILVNFMM 172

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFP---AYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
           M+  LFF  RD    + ++ +   H+ P   +    I   V +V +S  LG  + A+ +G
Sbjct: 173 MLFVLFFLLRD----NDKMIAAIRHVIPLSRSQEDAIMEEVEQVAKSAVLGSFLTAVAQG 228

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           L  G A WL G P  +  G + A  ++IP  G  + +   S+YLL+ G    A  L  WG
Sbjct: 229 LAGGFAMWLCGFPG-LFWGSMMAFASLIPVVGTALIWLPASLYLLLVGQWEWALFLAGWG 287

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            + +  +D  +RP L+ G   +  L  FF ++GG++  GL+G+  GP++  +  V++K  
Sbjct: 288 VLVVGSIDNVVRPLLMQGSSSMNTLLIFFSIIGGIQLFGLIGMIYGPIIFGVTLVLFKMY 347

Query: 346 IMAIKENKEKISSN 359
            +  K+  E+  SN
Sbjct: 348 EVEFKDFLEQQDSN 361


>gi|73542361|ref|YP_296881.1| hypothetical protein Reut_A2676 [Ralstonia eutropha JMP134]
 gi|72119774|gb|AAZ62037.1| Protein of unknown function UPF0118 [Ralstonia eutropha JMP134]
          Length = 388

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 144/343 (41%), Gaps = 45/343 (13%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL- 81
           SL  L  F   +L   I+ F+SW  Y+          +  A+I  V    + + P ++  
Sbjct: 23  SLLVLAPFTTALLWGAILAFSSWYPYTVLARWLGNRRSLAALICVVLAAVIVLGPFVYAG 82

Query: 82  --FYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP--GGMWASELWTKHLSHPQSLKIL 136
             F   + ++  LV + +     GIP +P WLS +P  GG         +L       I 
Sbjct: 83  ASFSAHIDQLSALVDRYI---DQGIPQLPDWLSSLPYVGG---------YLQTSWERLIH 130

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSI-------IFMIIALFFFYRDG-------- 181
           +++ +  N    + +  +  G   L   LS+          II  FFFY  G        
Sbjct: 131 ADSEMVAN----VRKLIAPVGHALLGAGLSVGAGLGQLALSIILAFFFYTGGEYAIDWLR 186

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +      +HL       +  +V  V+ + F+   +  IG         W+AGVP+ 
Sbjct: 187 AGMRRIAGERADHLLALAGSTVKGVVYGVLGTAFIQAVLQGIG--------LWIAGVPAA 238

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             LG +T  +++IP G P+ +   +++L   G    A  L +WG   + + D  ++P L+
Sbjct: 239 AILGFVTFFLSVIPVGPPLVWLPAALWLYHGGETGWAIFLVVWGVAVVGMADNVVKPLLI 298

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                +P +    G++GG    G LG+FIGP L+A+   + ++
Sbjct: 299 SKGTGMPLIWIMMGVLGGALAFGFLGVFIGPTLLAVAYALLRD 341


>gi|221067315|ref|ZP_03543420.1| protein of unknown function UPF0118 [Comamonas testosteroni KF-1]
 gi|220712338|gb|EED67706.1| protein of unknown function UPF0118 [Comamonas testosteroni KF-1]
          Length = 391

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 132/307 (42%), Gaps = 19/307 (6%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN----- 100
           P++   + +     T  A+   +  + + I+PL  +    + E   +  +V   N     
Sbjct: 45  PLHRKLLMRMPNRPTLAALATLLISLVMVILPLSLIGLSLIKETSAIYDQVSSGNLSAGS 104

Query: 101 ---QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFG 157
              Q    +P WL+      W  +L    L   Q+   LS   L+ +        A   G
Sbjct: 105 YVEQIFNALPSWLTP-----WMEKLHLGTLEEIQA--KLSNIALQAS--KLAATKAVGLG 155

Query: 158 MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG 217
              L + +    M+  +FF  RDG  +  ++ +    L P + ++++     VIR+T  G
Sbjct: 156 QNTLGFVVGFGVMLYLIFFLLRDGKELVARIWA-ATPLAPEHKRELATKFITVIRATVKG 214

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIF 276
              +A  +G + G  +W+ G+   V   V+ A ++++P  GA + +  V+IY L  G I 
Sbjct: 215 NLAVAAAQGALGGLIFWILGIQGAVLWAVVMAFLSLLPAVGAGLVWGPVAIYFLATGAIT 274

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
               L  +G + + +VD  LRP LVG   K+P        +GG+   GL G  +GP + A
Sbjct: 275 KGLILAAYGVLVIGLVDNVLRPLLVGKDTKMPDYVVLISTLGGMALFGLSGFVLGPAIAA 334

Query: 337 LIAVIWK 343
           L    W+
Sbjct: 335 LFMAAWE 341


>gi|332188283|ref|ZP_08390010.1| hypothetical protein SUS17_3412 [Sphingomonas sp. S17]
 gi|332011679|gb|EGI53757.1| hypothetical protein SUS17_3412 [Sphingomonas sp. S17]
          Length = 359

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 97/196 (49%), Gaps = 26/196 (13%)

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKI-------SRIVP---KVIRSTFLGMTIIAIG 224
           FF  RDG           E L PA+ + +       +R+V     V+R+T  G  I+ + 
Sbjct: 175 FFLIRDG-----------ERLGPAFVRALPLEQGVAARLVETFVAVVRATIKGSVIVGLV 223

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFL 283
           +G +    +W+ G+P+ +  GV+ AI A++P  G  I +  V++YLL  G I+    + +
Sbjct: 224 QGALGAITFWIVGLPAALLWGVLMAIAALLPAIGPAIIWGPVAVYLLATGAIWQGAVVIV 283

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            G + + + D  LRP LVG    LP        +GG+  +GL G+ +GPV+ AL    W+
Sbjct: 284 SGVLVIGLADNILRPILVGRDTGLPDWIVLLTTLGGIEVLGLSGIVVGPVVAALFLAGWR 343

Query: 344 ----ESIMAIKENKEK 355
               E  +A+ E + +
Sbjct: 344 ILSEERGVALPEAETE 359


>gi|225848452|ref|YP_002728615.1| membrane protein [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644073|gb|ACN99123.1| membrane protein [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 354

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 166/350 (47%), Gaps = 48/350 (13%)

Query: 16  IMFIILVSLYFLKGF--FAPVLSALIIGFTSWPIYSSF---ISKKEESSTFLAVIATVSV 70
           I FII   L+   G+  F+P +  +++      I+  F   I  K +S    ++I+T+++
Sbjct: 11  IFFIISFLLFLFLGYVIFSPFVGLILVSLLFVVIFYPFHLKIKSKVKSDILSSLISTLTI 70

Query: 71  MCLFIVPL-LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +   ++PL L +F+      KE++    L +Q+ I  P +        +  +L +    +
Sbjct: 71  LTFILIPLSLIVFFLA----KEIIDLYPLVSQY-ISNPNY--------FVEKLKSVPYLY 117

Query: 130 PQSLKILSETFLKTNG------IDFIPRFASRFGMI---FLD----YCLSIIFMIIALFF 176
              LK+ +E F   N       I+++  FAS F  I   FL     + + I  +I+ +FF
Sbjct: 118 NLYLKVQNEIFNNVNSNLHETFINYLKGFASTFFDIAKGFLTNLILFSIGIFILILNIFF 177

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY--- 233
            ++DG    ++L  L   + P   ++   +     ++++L +  + +G   V  +     
Sbjct: 178 LFKDG----EKLYKLVHSVIPLDKEEKDYL----FKNSYLAVQAVILGSVFVAVAQAVAT 229

Query: 234 ----WLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
                +AGV   + +  IT + A IP GGA + +  V+IYL    +       FL+G   
Sbjct: 230 LIGLLVAGVDYAIIIAFITFLAAFIPFGGASLVWVPVAIYLFATKSFIAGLLFFLYGTFV 289

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           +  VD  +RP +VG  I +  +  FF ++GG++  G LG+FI PV++A+I
Sbjct: 290 ISTVDNIVRPIVVGSKIDIHPMILFFAILGGLKAFGFLGIFIAPVIVAVI 339


>gi|330984387|gb|EGH82490.1| hypothetical protein PLA107_05089 [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 351

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 161/348 (46%), Gaps = 28/348 (8%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M   +  P GI   +I+ ++  +LY L  F   +    +I F +WP     +   E ++ 
Sbjct: 1   MISQLEKPIGIA--LIVGVLFAALYVLSPFAITLAWGALIAFATWPA----VKWIERTTG 54

Query: 61  FLAVIATVSVMCLFIV---PLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPG- 115
            L V A+     +F V   PL+ L      +       VV  ++  +P  P W++ +P  
Sbjct: 55  RLWVGASAVCFMMFAVVLGPLVALSVSFAGDATVFTHWVVEMSKSTLPESPGWVTGLPWV 114

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
           G +    W+       +  +  + +L +  I  I   +   G + ++  +S++F     F
Sbjct: 115 GSYLDHQWSLWHEKGPNWFLDVKPYLSSL-IHVIIGKSGVLGSVLVEIAISLLFA----F 169

Query: 176 FFYRDGFSIS----QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
           +F+ +G  I+    + L +L       YW+     +  VI     G+   +I + ++   
Sbjct: 170 WFHLEGEKITNLAQKALHALIGQASSRYWEIARNTISGVIN----GVIGTSIAQAVLALI 225

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
            +W+AGVP  + LGV T  +++IP G P+ +     +L  +G    A  L +W  + +  
Sbjct: 226 GFWIAGVPGALLLGVGTFFLSLIPMGPPLLWVPAIGWLFYQGETGYAIFLAIWCVVVVSG 285

Query: 292 VDKTLRPFLV--GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           VD  L+P L+  GG + LP +    G++GG+ T+G LGLFIGPV +AL
Sbjct: 286 VDHILKPILISRGGVLPLPIV--LIGIMGGMLTLGFLGLFIGPVCLAL 331


>gi|194288785|ref|YP_002004692.1| hypothetical protein RALTA_A0641 [Cupriavidus taiwanensis LMG
           19424]
 gi|193222620|emb|CAQ68623.1| conserved hypothetical protein, DUF20; putative membrane protein
           [Cupriavidus taiwanensis LMG 19424]
          Length = 394

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 147/349 (42%), Gaps = 35/349 (10%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           SL  L  F   +L   I+ F+SW  Y+             A+I  +    + + P ++  
Sbjct: 23  SLLVLAPFTTALLWGAILAFSSWHPYTVLSRWLGNRRGLAALICVLLATVIVLGPFVYAG 82

Query: 83  YYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
                 + +L + V    + G+P +P WLS +P           +L +     I +++ +
Sbjct: 83  ASFSAHLDDLAALVDRYMEQGLPQLPLWLSSLP-------YVGSYLQNSWDSVINADSEM 135

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSI-------IFMIIALFFFYRDG-FSIS-------Q 186
             N    + +  +  G + L   LSI          II  FFFY  G F+I+       +
Sbjct: 136 VAN----LRKLIAPVGHVLLGAGLSIGAGLGQLALSIILAFFFYTGGEFAIAWLRAGMRR 191

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
                 +HL       +  +V  V+ + F+   +  IG         W+AGVP    LG 
Sbjct: 192 IAGERADHLLELAGSTVKGVVYGVLGTAFIQAVLAGIG--------LWIAGVPGAAILGF 243

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +T  ++++P G P+ +   +++L   G    A  L +WG   + + D  ++P L+     
Sbjct: 244 VTFFLSVVPVGPPLVWLPAALWLYHTGATGWAIFLVVWGVGVVSMADNIVKPLLISKGTG 303

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +P +    G++GG    G LG+FIGP L+A+   + ++  +  +   ++
Sbjct: 304 MPLIWIMLGVLGGALAFGFLGVFIGPTLLAVAYALLRDWTIGSQGELQR 352


>gi|298291255|ref|YP_003693194.1| hypothetical protein Snov_1260 [Starkeya novella DSM 506]
 gi|296927766|gb|ADH88575.1| protein of unknown function UPF0118 [Starkeya novella DSM 506]
          Length = 370

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 147/327 (44%), Gaps = 15/327 (4%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           L+ L  ++  +L A+I+     P+     ++        A ++ ++ +C+ ++P   +  
Sbjct: 43  LWLLLPYYGAILWAVILAILFDPLRRRLEARLGGCRNLAAALSVLACICIVVIPGAAILA 102

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM---WASELWTKHLSHPQSLKILSETF 140
               E   L +++   N     +   L +I G +         T +L     ++    +F
Sbjct: 103 SLAQEAASLYNRI---NTREFDLATLLGEIQGALPPFVEKAFATLNLGDFVEIRTRLTSF 159

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           L     +   R A   G     + +S+  M+  LFF +RDG    + L +L     P   
Sbjct: 160 LMYASQEVATR-ALSIGQNTAQFFVSLGVMLYLLFFLFRDG----RLLANLIRKASPLSG 214

Query: 201 KKISRIVPK---VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG- 256
           +    I+ K   V+ +T  G  IIA  +G + G A+W+ G+ + +  GV+ A ++++P  
Sbjct: 215 RHTDHILEKFSSVVAATVKGNIIIAAIQGGIGGIAFWMLGIQAALLWGVLMAFLSLLPAI 274

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           GA + +  V++Y L+  + F    LF  G + +  VD  LRP LVG   +LP        
Sbjct: 275 GAALVWVPVAVYFLLAADYFRGVVLFAVGVLVISTVDNLLRPPLVGRGTRLPDYVVLIST 334

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWK 343
           VGG+  +G+ G  IGP++ AL   +W 
Sbjct: 335 VGGLSVIGMNGFVIGPLIAALFIAVWS 361


>gi|260564563|ref|ZP_05835048.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|265989779|ref|ZP_06102336.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260152206|gb|EEW87299.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|263000448|gb|EEZ13138.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 354

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 161/332 (48%), Gaps = 16/332 (4%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           ++  VL A+I+    +P+    +          A ++ +  +CL I+P+L +F   + E 
Sbjct: 28  YYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAFLSVLMCICLVIIPMLAIFGSLVDEG 87

Query: 90  KELVSKVVLANQHGIP--VPRWLSDIPGGMWASELWTKHL---SHPQSLKILSETFLKTN 144
             L  ++  + + GI   + R ++ +P  +   E W K     +       +S   ++ +
Sbjct: 88  TSLYQRLS-SREFGINGYIARIMAALPESL---EEWLKRFELGTFADWRARISSVVMQGS 143

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            + F  R  S FG   L + +    M+  LFF +RDG  + +++      L   Y ++  
Sbjct: 144 QL-FAARLVS-FGQNTLQFFIGFGIMLYLLFFLFRDGADVGKKIRR-AIPLSDDYTRQFL 200

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFT 263
                VIR+T  G  IIAI +G++ G  +WL G+ + +  GVI    +M+P  GA + +T
Sbjct: 201 EKFTAVIRATVKGNIIIAIIQGMIGGITFWLLGIEAALLWGVIMTFCSMLPAVGAALVWT 260

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             +++  + G+ ++   L + G + + +VD  LRP LVG   ++P        VGG+  +
Sbjct: 261 PAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLVGKGTRMPDYVVLISTVGGISLI 320

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G+ G  IGP++ A+    W  S++A +E K++
Sbjct: 321 GINGFVIGPLIAAMFIAAW--SLLA-EEQKDQ 349


>gi|237809884|ref|YP_002894324.1| hypothetical protein Tola_3150 [Tolumonas auensis DSM 9187]
 gi|237502145|gb|ACQ94738.1| protein of unknown function UPF0118 [Tolumonas auensis DSM 9187]
          Length = 356

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 162/337 (48%), Gaps = 24/337 (7%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI-VPLLFLFYYGMLE 88
           F    L A+I+   +W  ++ ++S +      +A +  V+++ LFI VPL+F      +E
Sbjct: 32  FLVATLWAIILVSATWDQFA-WLSARFGGRDGVAAMLVVTILMLFIMVPLVF----ASVE 86

Query: 89  MKELVSKVVLANQHGI------PVPRWLSDIP-GGMWASELWTKHLSHPQ-SLKILSE-T 139
             + ++ +    QH I       +P+WL D+P  G W    W   L   Q  +++L++  
Sbjct: 87  FAQQLTVLARDLQHQIESGVWPALPQWLLDVPYAGEWLQAEW---LGLQQLDMQVLNQLK 143

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            L T     +   A  FG   L   +S++   +     Y  G +I + + +    + P  
Sbjct: 144 GLVTPLAKIMLSMAGSFGAGMLMLLISLLIAGV----LYAHGETIHRWVLAFSHKVAPKE 199

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             ++  +    IR    G    AI +G      Y LAG+P  ++LG+ T+++++IPGG P
Sbjct: 200 GIRLLHVAHTTIRGVVNGFIGAAIAQGAFAWFGYALAGIPHALSLGLATSLISVIPGG-P 258

Query: 260 ISFTAVSI-YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           +  +  +I +L  +G++  A  + +W    +  +D  ++  ++G    LP +   FG+ G
Sbjct: 259 MLLSIPAIGWLYQQGSVGWAIFVAVWILFAVGSIDNVVKSLVIGRSSPLPIVLILFGVAG 318

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G  + GLLG+F+GP+L+AL+  + K  + A +   + 
Sbjct: 319 GAISFGLLGVFLGPILLALVYALLKNWVNADEAADQT 355


>gi|17989151|ref|NP_541784.1| putative transmembrane protein [Brucella melitensis bv. 1 str. 16M]
 gi|256043359|ref|ZP_05446292.1| hypothetical protein Bmelb1R_02664 [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|17985002|gb|AAL54048.1| putative transmembrane protein [Brucella melitensis bv. 1 str. 16M]
          Length = 352

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 161/332 (48%), Gaps = 16/332 (4%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           ++  VL A+I+    +P+    +          A ++ +  +CL I+P+L +F   + E 
Sbjct: 26  YYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAFLSVLMCICLVIIPMLAIFGSLVDEG 85

Query: 90  KELVSKVVLANQHGIP--VPRWLSDIPGGMWASELWTKHL---SHPQSLKILSETFLKTN 144
             L  ++  + + GI   + R ++ +P  +   E W K     +       +S   ++ +
Sbjct: 86  TSLYQRLS-SREFGINGYIARIMAALPESL---EEWLKRFELGTFADWRARISSVVMQGS 141

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            + F  R  S FG   L + +    M+  LFF +RDG  + +++      L   Y ++  
Sbjct: 142 QL-FAARLVS-FGQNTLQFFIGFGIMLYLLFFLFRDGADVGKKIRR-AIPLSDDYTRQFL 198

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFT 263
                VIR+T  G  IIAI +G++ G  +WL G+ + +  GVI    +M+P  GA + +T
Sbjct: 199 EKFTAVIRATVKGNIIIAIIQGMIGGITFWLLGIEAALLWGVIMTFCSMLPAVGAALVWT 258

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             +++  + G+ ++   L + G + + +VD  LRP LVG   ++P        VGG+  +
Sbjct: 259 PAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLVGKGTRMPDYVVLISTVGGISLI 318

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G+ G  IGP++ A+    W  S++A +E K++
Sbjct: 319 GINGFVIGPLIAAMFIAAW--SLLA-EEQKDQ 347


>gi|237731362|ref|ZP_04561843.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226906901|gb|EEH92819.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 369

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 162/352 (46%), Gaps = 31/352 (8%)

Query: 9   QGIMRWMIMFII-LVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
            G+ +   +FI+ LV+  F   L  +F+ +L A I+     P+ +   S   E +  LA 
Sbjct: 4   NGLTKGFFIFILALVTWAFFDVLSPYFSAILWAAILTTIFNPVKNRLRSALGERNG-LAS 62

Query: 65  IATVSVMCLFI-VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM--WASE 121
           + T+ ++CL + +PL+ +     +E+  + +K+    Q+    P  ++ I   +  WA  
Sbjct: 63  LITIVIICLIVFIPLMVILSSLAIELNVVYTKL---QQNDTQFPEVVTSILSFLPDWARG 119

Query: 122 LWTKHLSHP--QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              +H      Q  K LS+  L+  G  ++   A   G     + +S   M+  LFF  +
Sbjct: 120 FLAEHNLDDIAQIQKKLSDVVLQ--GGQYLAGSAFLIGKGTFGFAISFGIMLYLLFFLLK 177

Query: 180 DG-FSISQQLDSL------GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
           DG + + Q LDSL       +HLF  +          V R+T  G  ++A+ +G++ G A
Sbjct: 178 DGPYLVRQILDSLPLSDFAKQHLFAKF--------VGVTRATVKGTAVVALVQGILGGIA 229

Query: 233 YWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
           + +  +   V  G + A ++++P  G+ I +   +I+L     ++    +  +  I + +
Sbjct: 230 FAIVDIDGSVLWGALMAFLSLVPAVGSAIVWVPAAIFLFATHQLWQGLFIVGFFVIIVGL 289

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           VD  LRP LVG   K+P        +GG+   G+ G  IGP++ AL    W 
Sbjct: 290 VDNILRPLLVGKDTKMPDYLILITTLGGMEIYGINGFVIGPLIAALFITCWN 341


>gi|317484069|ref|ZP_07943001.1| hypothetical protein HMPREF0179_00352 [Bilophila wadsworthia 3_1_6]
 gi|316924675|gb|EFV45829.1| hypothetical protein HMPREF0179_00352 [Bilophila wadsworthia 3_1_6]
          Length = 391

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 8/200 (4%)

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS---LGEHLFPAYWKKIS 204
           F+ R     G   L +  ++  ++   FF   DG  I + L      G+H     ++K +
Sbjct: 146 FLARNTVTLGENTLGFLTNLALVLYIAFFLLMDGTKIQELLIKALPFGDHREKLLFRKFA 205

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFT 263
               +V R+T  G  ++A  +G + G  +WL  + + +  GV+   +A+IP  GA + + 
Sbjct: 206 ----EVTRATVKGSLLVAAAQGALGGVIFWLLDIHAALLWGVVMTALALIPVVGAALVWG 261

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
            V++YLL+ G+ ++   L  +G+  + + D  LRP LVG   KLP        +GG    
Sbjct: 262 PVAVYLLLTGDYWDGGILLAYGSTVIGLADNILRPLLVGRDTKLPDFLVLLSTLGGFVFF 321

Query: 324 GLLGLFIGPVLMALIAVIWK 343
           G+ G   GP L  L   +W+
Sbjct: 322 GMDGFVTGPTLAVLFVTVWQ 341


>gi|189022920|ref|YP_001932661.1| hypothetical protein BAbS19_II07200 [Brucella abortus S19]
 gi|189021494|gb|ACD74215.1| hypothetical protein BAbS19_II07200 [Brucella abortus S19]
          Length = 361

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 161/332 (48%), Gaps = 16/332 (4%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           ++  VL A+I+    +P+    +          A ++ +  +CL I+P+L +F   + E 
Sbjct: 35  YYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAFLSVLMCICLVIIPMLAIFGSLVDEG 94

Query: 90  KELVSKVVLANQHGIP--VPRWLSDIPGGMWASELWTKHL---SHPQSLKILSETFLKTN 144
             L  ++  + + GI   + R ++ +P  +   E W K     +       +S   ++ +
Sbjct: 95  TSLYQRLS-SREFGINGYIARIMAALPESL---EEWLKRFELGTFADWRARISSVVMQGS 150

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            + F  R  S FG   L + +    M+  LFF +RDG  + +++      L   Y ++  
Sbjct: 151 QL-FAARLVS-FGQNTLQFFIGFGIMLYLLFFLFRDGADVGKKIRR-AIPLSDDYTRQFL 207

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFT 263
                VIR+T  G  IIAI +G++ G  +WL G+ + +  GVI    +M+P  GA + +T
Sbjct: 208 EKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAALLWGVIMTFCSMLPAVGAALVWT 267

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             +++  + G+ ++   L + G + + +VD  LRP LVG   ++P        VGG+  +
Sbjct: 268 PAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLVGKGTRMPDYVVLISTVGGISLI 327

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G+ G  IGP++ A+    W  S++A +E K++
Sbjct: 328 GINGFVIGPLIAAMFIAAW--SLLA-EEQKDQ 356


>gi|85860942|ref|YP_463144.1| permease [Syntrophus aciditrophicus SB]
 gi|85724033|gb|ABC78976.1| predicted permease [Syntrophus aciditrophicus SB]
          Length = 350

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 90/326 (27%), Positives = 156/326 (47%), Gaps = 17/326 (5%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           LY +K FF P+  A+II     P+Y+  I  +  S   L+ +  V V+ + I+P +F+  
Sbjct: 23  LYLMKPFFYPLFWAIIISSIVHPLYARLI-LRWPSPNLLSAVLLVLVLLILILPTIFI-- 79

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS--LKILSETFL 141
            G L + + +S     +     + R L ++ G + +S  + + L   Q+  ++ LSE   
Sbjct: 80  -GSLLVSQSMSMYNTLSSDSSHIARNLQELLGWI-SSHPYIQKLDIDQNFWMEKLSEMLR 137

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                ++I    S      L        M+ ALFFF RDG  + Q        L P   +
Sbjct: 138 SIA--NYIFTRLSSLTQNTLAAVAQFAIMLYALFFFIRDGEKLLQS----AMRLLPLGNQ 191

Query: 202 KISRIVPKVIRS--TFLGMTIIAIGEGLVLGS-AYWLAGVPSHVALGVITAIMAMIPG-G 257
           +   +  + I +  + L +T+I  G    LG+ A+W+AG+   V  GVI  + A+IPG G
Sbjct: 192 RERLLFDRFINTAKSTLKVTLIIGGLQGTLGALAFWIAGIEGSVLWGVIMIVTAIIPGIG 251

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
             I +    I LLI G+++    + L+G + + +VD  LRP L+   +++  L  F   +
Sbjct: 252 CSIVWAPAGIILLISGHLWEGIMILLFGGLVISLVDNLLRPILLERDVQMHPLLIFLSTL 311

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWK 343
           GG+   G  G  +GP++ +L+  I +
Sbjct: 312 GGIVLFGFSGFVLGPIIASLMQSICQ 337


>gi|260544905|ref|ZP_05820726.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260756769|ref|ZP_05869117.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260760200|ref|ZP_05872548.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260763438|ref|ZP_05875770.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260882585|ref|ZP_05894199.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|265993113|ref|ZP_06105670.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|265999137|ref|ZP_05465132.2| conserved hypothetical protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|297249715|ref|ZP_06933416.1| hypothetical protein BAYG_02478 [Brucella abortus bv. 5 str. B3196]
 gi|260098176|gb|EEW82050.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260670518|gb|EEX57458.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260673859|gb|EEX60680.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260676877|gb|EEX63698.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260872113|gb|EEX79182.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|262763983|gb|EEZ10015.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263092386|gb|EEZ16639.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|297173584|gb|EFH32948.1| hypothetical protein BAYG_02478 [Brucella abortus bv. 5 str. B3196]
 gi|326553915|gb|ADZ88554.1| conserved hypothetical protein [Brucella melitensis M5-90]
          Length = 354

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 161/332 (48%), Gaps = 16/332 (4%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           ++  VL A+I+    +P+    +          A ++ +  +CL I+P+L +F   + E 
Sbjct: 28  YYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAFLSVLMCICLVIIPMLAIFGSLVDEG 87

Query: 90  KELVSKVVLANQHGIP--VPRWLSDIPGGMWASELWTKHL---SHPQSLKILSETFLKTN 144
             L  ++  + + GI   + R ++ +P  +   E W K     +       +S   ++ +
Sbjct: 88  TSLYQRLS-SREFGINGYIARIMAALPESL---EEWLKRFELGTFADWRARISSVVMQGS 143

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            + F  R  S FG   L + +    M+  LFF +RDG  + +++      L   Y ++  
Sbjct: 144 QL-FAARLVS-FGQNTLQFFIGFGIMLYLLFFLFRDGADVGKKIRR-AIPLSDDYTRQFL 200

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFT 263
                VIR+T  G  IIAI +G++ G  +WL G+ + +  GVI    +M+P  GA + +T
Sbjct: 201 EKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAALLWGVIMTFCSMLPAVGAALVWT 260

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             +++  + G+ ++   L + G + + +VD  LRP LVG   ++P        VGG+  +
Sbjct: 261 PAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLVGKGTRMPDYVVLISTVGGISLI 320

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G+ G  IGP++ A+    W  S++A +E K++
Sbjct: 321 GINGFVIGPLIAAMFIAAW--SLLA-EEQKDQ 349


>gi|258623083|ref|ZP_05718096.1| putative lipoprotein [Vibrio mimicus VM573]
 gi|258584696|gb|EEW09432.1| putative lipoprotein [Vibrio mimicus VM573]
          Length = 361

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 150/345 (43%), Gaps = 17/345 (4%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           L   + ++ +   ++ A II    +PI+  F  K      F A ++ V +  + ++PLLF
Sbjct: 23  LACYWLVEPYINSIVMAFIISLLMFPIHEWFEKKLPSHDNFAAFLSCVVLTVIIVIPLLF 82

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSD---IPGGMWASELWTKHLSHPQSLKILS 137
           +F   + +  +    +     HG  +    S    + G   A+         PQ +    
Sbjct: 83  IFGAIVQQGSKFSQNLYAWVTHG-GIQELFSHPWIVKGLSLANHYLPFEEISPQQIAQRI 141

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
             F  T G + +   A   G     + ++   M+  LFF  RD      ++ S   H+ P
Sbjct: 142 GQFATTFGSNLVSISAKILGDA-TSFVMNFFLMLFVLFFLLRD----HDKIISAIRHILP 196

Query: 198 AYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
               +  R+   +  V +S  +G  + AI +GL  G   WLAG P  +  G +    + I
Sbjct: 197 LSRSQEDRLLNEIENVSKSAVMGSFLTAIAQGLAGGIGMWLAGFPG-LFWGTMMGFASFI 255

Query: 255 PG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P  G  + +   ++YL + G+   A  L +W    +  +D  LRPFL+ G   +  L  F
Sbjct: 256 PVVGTALIWIPATLYLFLTGDTTWAIFLAIWSIAVVGSIDNLLRPFLMQGSAGMNTLMIF 315

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAV---IWKESIMAIKENKEK 355
           F L+GG++  GL+GL  GP++ A+  V   I++E      + ++K
Sbjct: 316 FSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRGFLDQQDK 360


>gi|237817216|ref|ZP_04596208.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
 gi|237788029|gb|EEP62245.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
          Length = 372

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 161/332 (48%), Gaps = 16/332 (4%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           ++  VL A+I+    +P+    +          A ++ +  +CL I+P+L +F   + E 
Sbjct: 46  YYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAFLSVLMCICLVIIPMLAIFGSLVDEG 105

Query: 90  KELVSKVVLANQHGIP--VPRWLSDIPGGMWASELWTKHL---SHPQSLKILSETFLKTN 144
             L  ++  + + GI   + R ++ +P  +   E W K     +       +S   ++ +
Sbjct: 106 TSLYQRLS-SREFGINGYIARIMAALPESL---EEWLKRFELGTFADWRARISSVVMQGS 161

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            + F  R  S FG   L + +    M+  LFF +RDG  + +++      L   Y ++  
Sbjct: 162 QL-FAARLVS-FGQNTLQFFIGFGIMLYLLFFLFRDGADVGKKIRR-AIPLSDDYTRQFL 218

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFT 263
                VIR+T  G  IIAI +G++ G  +WL G+ + +  GVI    +M+P  GA + +T
Sbjct: 219 EKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAALLWGVIMTFCSMLPAVGAALVWT 278

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             +++  + G+ ++   L + G + + +VD  LRP LVG   ++P        VGG+  +
Sbjct: 279 PAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLVGKGTRMPDYVVLISTVGGISLI 338

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G+ G  IGP++ A+    W  S++A +E K++
Sbjct: 339 GINGFVIGPLIAAMFIAAW--SLLA-EEQKDQ 367


>gi|62317671|ref|YP_223524.1| hypothetical protein BruAb2_0762 [Brucella abortus bv. 1 str.
           9-941]
 gi|83269654|ref|YP_418945.1| hypothetical protein BAB2_0776 [Brucella melitensis biovar Abortus
           2308]
 gi|225686264|ref|YP_002734236.1| hypothetical protein BMEA_B0439 [Brucella melitensis ATCC 23457]
 gi|254691168|ref|ZP_05154422.1| hypothetical protein Babob68_13648 [Brucella abortus bv. 6 str.
           870]
 gi|254695528|ref|ZP_05157356.1| hypothetical protein Babob3T_12990 [Brucella abortus bv. 3 str.
           Tulya]
 gi|254698951|ref|ZP_05160779.1| hypothetical protein Babob28_14959 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254732398|ref|ZP_05190976.1| hypothetical protein Babob42_14739 [Brucella abortus bv. 4 str.
           292]
 gi|256111637|ref|ZP_05452627.1| hypothetical protein Bmelb3E_03218 [Brucella melitensis bv. 3 str.
           Ether]
 gi|256256354|ref|ZP_05461890.1| hypothetical protein Babob9C_03093 [Brucella abortus bv. 9 str.
           C68]
 gi|261215918|ref|ZP_05930199.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
 gi|62197864|gb|AAX76163.1| hypothetical membrane protein [Brucella abortus bv. 1 str. 9-941]
 gi|82939928|emb|CAJ12942.1| Protein of unknown function UPF0118 [Brucella melitensis biovar
           Abortus 2308]
 gi|225642369|gb|ACO02282.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
 gi|260917525|gb|EEX84386.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
 gi|326410623|gb|ADZ67687.1| conserved hypothetical protein [Brucella melitensis M28]
          Length = 352

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 161/332 (48%), Gaps = 16/332 (4%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           ++  VL A+I+    +P+    +          A ++ +  +CL I+P+L +F   + E 
Sbjct: 26  YYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAFLSVLMCICLVIIPMLAIFGSLVDEG 85

Query: 90  KELVSKVVLANQHGIP--VPRWLSDIPGGMWASELWTKHL---SHPQSLKILSETFLKTN 144
             L  ++  + + GI   + R ++ +P  +   E W K     +       +S   ++ +
Sbjct: 86  TSLYQRLS-SREFGINGYIARIMAALPESL---EEWLKRFELGTFADWRARISSVVMQGS 141

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            + F  R  S FG   L + +    M+  LFF +RDG  + +++      L   Y ++  
Sbjct: 142 QL-FAARLVS-FGQNTLQFFIGFGIMLYLLFFLFRDGADVGKKIRR-AIPLSDDYTRQFL 198

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFT 263
                VIR+T  G  IIAI +G++ G  +WL G+ + +  GVI    +M+P  GA + +T
Sbjct: 199 EKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAALLWGVIMTFCSMLPAVGAALVWT 258

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             +++  + G+ ++   L + G + + +VD  LRP LVG   ++P        VGG+  +
Sbjct: 259 PAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLVGKGTRMPDYVVLISTVGGISLI 318

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G+ G  IGP++ A+    W  S++A +E K++
Sbjct: 319 GINGFVIGPLIAAMFIAAW--SLLA-EEQKDQ 347


>gi|262163961|ref|ZP_06031700.1| predicted permease [Vibrio mimicus VM223]
 gi|262027489|gb|EEY46155.1| predicted permease [Vibrio mimicus VM223]
          Length = 361

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 150/345 (43%), Gaps = 17/345 (4%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           L   + ++ +   ++ A II    +PI+  F  K      F A ++ V +  + ++PLLF
Sbjct: 23  LACYWLVEPYINSIVMAFIISLLMFPIHEWFEKKLPSHDNFAAFLSCVVLTVIIVIPLLF 82

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSD---IPGGMWASELWTKHLSHPQSLKILS 137
           +F   + +  +    +     HG  +    S    + G   A+         PQ +    
Sbjct: 83  IFGAIVQQGSKFSQNLYAWVTHG-GIQELFSHPWIVKGLSLANHYLPFEEISPQQIAQRI 141

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
             F  T G + +   A   G     + ++   M+  LFF  RD      ++ S   H+ P
Sbjct: 142 GQFATTFGSNLVSISAKILGDA-TSFVMNFFLMLFVLFFLLRD----HDKIISAIRHILP 196

Query: 198 AYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
               +  R+   +  V +S  +G  + AI +GL  G   WLAG P  +  G +    + I
Sbjct: 197 LSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGLAGGIGMWLAGFPG-LFWGTMMGFASFI 255

Query: 255 PG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P  G  + +   ++YL + G+   A  L +W    +  +D  LRPFL+ G   +  L  F
Sbjct: 256 PVVGTALIWIPATLYLFLTGDTTWAIFLAIWSIAVVGSIDNLLRPFLMQGSAGMNTLMIF 315

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAV---IWKESIMAIKENKEK 355
           F L+GG++  GL+GL  GP++ A+  V   I++E      + ++K
Sbjct: 316 FSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRGFLDQQDK 360


>gi|307294633|ref|ZP_07574475.1| protein of unknown function UPF0118 [Sphingobium chlorophenolicum
           L-1]
 gi|306879107|gb|EFN10325.1| protein of unknown function UPF0118 [Sphingobium chlorophenolicum
           L-1]
          Length = 369

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 2/192 (1%)

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
           A + G     + +++  M+   FF  RDG  ++  +D     +   Y + + R    V R
Sbjct: 156 ALQIGQSAFSFLMALGVMLYLTFFLLRDGPLLAAMVDR-AAPMRTTYRQALMRQFVIVTR 214

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI 271
           +T  G  ++AI +G++ G  +W  G+P  +  GV+    ++IP  G  + +  V+IYL +
Sbjct: 215 ATIKGSIVVAIVQGVIGGMVFWALGLPGALLWGVLMGAFSLIPAVGTGLVWVPVAIYLFV 274

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
            G +     L   G   + +VD  LRP LVG   ++P        +GG+   G  G+ IG
Sbjct: 275 TGAVVEGLILAFCGMFVIGMVDNILRPVLVGRDTRIPDYVVLITTLGGIDLFGFNGIVIG 334

Query: 332 PVLMALIAVIWK 343
           PV+ AL    W 
Sbjct: 335 PVIAALFIATWN 346


>gi|222053456|ref|YP_002535818.1| protein of unknown function UPF0118 [Geobacter sp. FRC-32]
 gi|221562745|gb|ACM18717.1| protein of unknown function UPF0118 [Geobacter sp. FRC-32]
          Length = 360

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 18/189 (9%)

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG-------EG 226
           LFF YRDG    +++ S     F      + R + + IR+T    T +A+G       +G
Sbjct: 170 LFFVYRDG----ERVMSTAVTRFAPDGNNMRRYLSR-IRAT---TTAVAVGTLFTCLVQG 221

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           ++ G  Y+ A VP+ V    +T++ A++P  G  I +  ++ Y+  KG    A  L LW 
Sbjct: 222 IIAGIGYFFADVPAPVLFAGLTSVAALVPVVGTAIIWVPLAAYVAFKGAYVTAGLLALWC 281

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
              + + D  +RP  VG    +P      G + GV T+GLLGL +GP++ A +  +W E 
Sbjct: 282 VFMVGLADNAIRPIAVGAKGNVPVPAVVLGAICGVTTIGLLGLILGPIIFATVINLWHE- 340

Query: 346 IMAIKENKE 354
            +A  E  E
Sbjct: 341 -LATVERSE 348


>gi|227114498|ref|ZP_03828154.1| hypothetical protein PcarbP_16133 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 389

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/368 (23%), Positives = 173/368 (47%), Gaps = 31/368 (8%)

Query: 6   LNPQGIMR-WMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +N +G+ + + I+ + +V+L F   L  +++ +L A ++     P+ S    K  + +  
Sbjct: 1   MNIKGLTKGFFILILFIVTLAFFDILAPYYSAILWAAVLAIIFHPLKSKIRQKLNDRNGV 60

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWAS 120
            +++  + +  L  +PL  +    ++E+  + +++  +N Q  + +   +  +P   WA 
Sbjct: 61  ASLLTVLIIFLLVFIPLGIIVSSLVVEINGVYTRLQDSNTQFPVVLAELIQHLP--RWAR 118

Query: 121 ELWTKHLSHPQSLKI---LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
               +H +   + KI   LS+  LK  G  ++       G     + +    M+  LFF 
Sbjct: 119 HFLAEH-NLDNAAKIQQELSQVVLK--GGQYLAGSVLLIGKGTFTFFIGFGVMLYLLFFL 175

Query: 178 YRDG-FSISQQLDSL------GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
            +DG + ++  L+SL        HL   +          V R+T  G  ++AI +G + G
Sbjct: 176 LKDGAYLVNLILESLPLSTHVKHHLLVKF--------AAVSRATVKGTVVVAIVQGTLGG 227

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
            A+ +AG+   +  G + A +++IP  G+ I +   +I+L     ++ A  +  +  + +
Sbjct: 228 IAFSIAGIEGSLLWGSLMAFLSLIPAVGSAIIWVPAAIFLFATDMLWQAIFIVAFFVLVI 287

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            +VD  LRP LVG   K+P        +GG+   G+ G  IGP++ AL    W  +I++ 
Sbjct: 288 GLVDNILRPLLVGKDTKMPDYLILIATLGGMEIYGINGFVIGPLIAALFIACW--NILSG 345

Query: 350 KENKEKIS 357
           ++N+E I 
Sbjct: 346 RDNQENIE 353


>gi|120555336|ref|YP_959687.1| hypothetical protein Maqu_2425 [Marinobacter aquaeolei VT8]
 gi|120325185|gb|ABM19500.1| protein of unknown function UPF0118 [Marinobacter aquaeolei VT8]
          Length = 363

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 97/203 (47%), Gaps = 8/203 (3%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
            G  F+ + A   G     + L +  M+   FF  RDG    Q+L  L     P   ++ 
Sbjct: 139 GGSQFLAKQALGIGQNTFQFFLGLALMVYLAFFLIRDG----QKLIELMIRALPLGDERE 194

Query: 204 SRIVPK---VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
             +  K   V R+T  G  +IAI +G + G  +W+ G+   +  GV+ AI++++P  GA 
Sbjct: 195 RLLFAKFAEVTRATVKGNLLIAIIQGALGGMIFWILGITGALLWGVVMAIVSLLPAVGAA 254

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           I +   +IYL   G+I  A  L  +G + + + D  LRP LVG   K+P        +GG
Sbjct: 255 IVWVPAAIYLAAVGDIVPAIILTAYGVVVIGLADNLLRPVLVGRDTKMPDYLVLLSTLGG 314

Query: 320 VRTMGLLGLFIGPVLMALIAVIW 342
           +   G+ G  +GP++ AL    W
Sbjct: 315 IVMFGINGFVMGPLVAALFMAFW 337


>gi|225851276|ref|YP_002731510.1| membrane protein [Persephonella marina EX-H1]
 gi|225646547|gb|ACO04733.1| membrane protein [Persephonella marina EX-H1]
          Length = 355

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 141/299 (47%), Gaps = 22/299 (7%)

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS 111
           +  K +S+   ++I+T  V    IVP + L  +   ++  L   ++ A   G  +  +++
Sbjct: 52  LDHKLKSTLLSSLISTAIVFMFIIVPSIVLIAFFTNQVISLYPVIIQAVSEGHTIEYYIN 111

Query: 112 DIPGGMWASELWTKHLSHPQSLKILS-ETFLKT---NGIDFIPRFASRFGM-IFLDYCLS 166
            IP       L + H    QSL+ L  E  L T   N +  I  F    G  +F++    
Sbjct: 112 QIP------ILSSIHKIFLQSLQTLHIEIDLNTVLRNILSNIANFLIEQGKSLFINITFL 165

Query: 167 II---FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV---IRSTFLGMTI 220
           II    M++ +FF ++DG S+  ++      L P   K  + ++ K    I+   LG  +
Sbjct: 166 IIGIGIMLVTIFFLFKDGESLYDRV----LKLIPLPEKDKNFLLSKTYTAIQGVVLGSVL 221

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNAT 279
            AI +G++    Y+ AG+   +    IT I A +P GGA + +  ++IYL I        
Sbjct: 222 TAIAQGILSFIGYFTAGLEFSLFWAFITFIAAFLPIGGASLVWIPIAIYLFISKGFLTGF 281

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
              LWG   + +VD  ++P ++G    +  +  FF ++GG+   G +G+F+ P+++ LI
Sbjct: 282 LFALWGTFVISLVDNIIKPVVIGDKTNIHPVILFFAILGGLNLFGFIGIFLAPIVIVLI 340


>gi|261823604|ref|YP_003261710.1| hypothetical protein Pecwa_4411 [Pectobacterium wasabiae WPP163]
 gi|261607617|gb|ACX90103.1| protein of unknown function UPF0118 [Pectobacterium wasabiae
           WPP163]
          Length = 389

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/368 (23%), Positives = 173/368 (47%), Gaps = 31/368 (8%)

Query: 6   LNPQGIMR-WMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +N +G+ + + I+ +  V+L F   L  +++ +L A ++     P+ S    K  + +  
Sbjct: 1   MNIKGLTKGFFILILFAVTLAFFDILAPYYSAILWAAVLAIIFHPLKSKIRQKLNDRNGI 60

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWAS 120
            +++  + +  +  +PL  +    ++E+  + +++  +N Q  + +   L  +P   WA 
Sbjct: 61  ASLLTVLIIFLIVFIPLGIIVSSLVVEINGVYTRLQDSNTQFPVVLAELLQHLP--KWAR 118

Query: 121 ELWTKHLSHPQSLKI---LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
              T+H +   + KI   LS+  LK  G  ++       G     + +    M+  LFF 
Sbjct: 119 HFLTEH-NLDNAAKIQQELSQVALK--GGQYLAGSVLLIGKGTFTFFIGFGVMLYLLFFL 175

Query: 178 YRDG-FSISQQLDSL------GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
            +DG + ++  L+SL        HL   +          V R+T  G  ++AI +G + G
Sbjct: 176 LKDGSYLVNLILESLPLSTHVKHHLLVKF--------AAVSRATVKGTAVVAIVQGTLGG 227

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
            A+ +AG+   +  G + A +++IP  G+ I +   +++L     ++ A  +  +  + +
Sbjct: 228 IAFSIAGIEGSLLWGSLMAFLSLIPAVGSAIIWVPAAVFLFATDMLWQAIFIVAFFVLVI 287

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            +VD  LRP LVG   K+P        +GG+   G+ G  IGP++ AL    W  +I++ 
Sbjct: 288 GLVDNILRPLLVGKDTKMPDYLILIATLGGMEIYGINGFVIGPLIAALFIACW--NILSG 345

Query: 350 KENKEKIS 357
           ++N+E I 
Sbjct: 346 RDNQENIE 353


>gi|253690490|ref|YP_003019680.1| hypothetical protein PC1_4130 [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251757068|gb|ACT15144.1| protein of unknown function UPF0118 [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 406

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 175/371 (47%), Gaps = 31/371 (8%)

Query: 3   ETMLNPQGIMR-WMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEES 58
           E ++N +G+ + + I+ + +V+L F   L  +++ +L A ++     P+ S    K  + 
Sbjct: 5   EIVVNIKGLTKGFFILILFVVTLAFFDILAPYYSAILWAAVLAVIFHPLKSKIRQKLNDR 64

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGM 117
           +   +++  + +  +  +PL  +    ++E+  + +++  +N Q  + +   L  +P   
Sbjct: 65  NGVASLLTVLIIFLIVFIPLGVIVSSLVVEINGVYTRLQDSNTQFPVVLAELLQHLP--K 122

Query: 118 WASELWTKHLSHPQSLKI---LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
           WA     +H +   + KI   LS+  LK  G  ++       G     + +    M+  L
Sbjct: 123 WARHFLAEH-NLDNAAKIQQELSQVALK--GGQYLAGSVLLIGKGTFTFFIGFGVMLYLL 179

Query: 175 FFFYRDG-FSISQQLDSL------GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           FF  +DG + ++  L+SL        HL   +          V R+T  G  ++AI +G 
Sbjct: 180 FFLLKDGSYLVNLILESLPLSTHVKHHLLVKF--------AAVSRATVKGTAVVAIVQGT 231

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           + G A+ +AG+   +  G + A +++IP  G+ I +   +++L     ++ A  +  +  
Sbjct: 232 LGGIAFSIAGIEGSLLWGSLMAFLSLIPAVGSAIIWVPAAVFLFATDMLWQAIFIVAFFV 291

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           + + +VD  LRP LVG   K+P        +GG+   G+ G  IGP++ AL    W  +I
Sbjct: 292 LVIGLVDNILRPLLVGKDTKMPDYLILIATLGGMEIYGINGFVIGPLIAALFIACW--NI 349

Query: 347 MAIKENKEKIS 357
           ++ ++N+E I 
Sbjct: 350 LSGRDNQENIE 360


>gi|119387710|ref|YP_918744.1| hypothetical protein Pden_4988 [Paracoccus denitrificans PD1222]
 gi|119378285|gb|ABL73048.1| protein of unknown function UPF0118 [Paracoccus denitrificans
           PD1222]
          Length = 347

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 93/198 (46%), Gaps = 2/198 (1%)

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
            FI   A   G     + + +  M+  LFF +RDG  +   + S    L   + + I + 
Sbjct: 145 QFIASRAMVIGQGAAQFSIGLGVMLYVLFFLFRDGRGLVGSI-SAASPLSAPHTRHIMQK 203

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAV 265
              V+++T  G  +IA  +G + G  +WL G+ + +  GVI  +++++P  GA + +   
Sbjct: 204 FVDVVKATVTGNVVIATIQGTIGGVTFWLVGIEAALLCGVIMGVLSLLPAVGAFLVWLPF 263

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++Y LI G       +   G + +  +D  LRP LVG    LP        +GG+  MG+
Sbjct: 264 AVYYLITGAYLKGIVIMAVGVLVISTIDNLLRPPLVGRRSSLPDYVVLVSTLGGISQMGM 323

Query: 326 LGLFIGPVLMALIAVIWK 343
            G  +GP++ A    +W 
Sbjct: 324 NGFVVGPLIAAFFIAVWS 341


>gi|186476728|ref|YP_001858198.1| hypothetical protein Bphy_1973 [Burkholderia phymatum STM815]
 gi|184193187|gb|ACC71152.1| protein of unknown function UPF0118 [Burkholderia phymatum STM815]
          Length = 382

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 150/345 (43%), Gaps = 37/345 (10%)

Query: 32  APVLSALIIG----FTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           AP  +AL+ G    F+SW +Y    +       + A +  + ++ + + P ++  +    
Sbjct: 37  APFTTALLWGAILSFSSWGLYCKLATSLGGRRRWAATLIVLIILIVVLGPFVYAGFALGA 96

Query: 88  EMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTK-------------HLSHPQS 132
             +++ + V      G+P +P W++ IP  G      W +              L+ P  
Sbjct: 97  HTRDITALVQHLMDAGLPDLPDWVARIPLVGSSIESFWERVTSSNSEMVAQLRGLAAPAG 156

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             IL+     T+G+  +               LSII      FFFY  G   +  L++  
Sbjct: 157 KWILAAALAVTHGLGLL--------------ALSIILT----FFFYTGGEGAAAWLNAGM 198

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             +       +  +    ++    G+   A+ +G++ G   W+AGVP+   LG+ T  ++
Sbjct: 199 RRIAGERADYLLALAGSTVKGVVYGILGTALVQGVLAGFGCWIAGVPAPALLGLATFFLS 258

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +IPGG  + +   +I+L   G    A  L +WG + + + D  ++P L+G    +P +  
Sbjct: 259 VIPGGPVVVWLPAAIWLYHGGETGWAIFLVVWGVVVVGMSDNVVKPILIGKSSDMPLILV 318

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
             G++GG    G LG+FIGP L+A+   +  +  +   E +E I+
Sbjct: 319 MLGILGGAFAFGFLGVFIGPTLLAVAYTVLHDWTIGSPEARELIA 363


>gi|89072498|ref|ZP_01159070.1| putative permease [Photobacterium sp. SKA34]
 gi|89051602|gb|EAR57055.1| putative permease [Photobacterium sp. SKA34]
          Length = 361

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 171/384 (44%), Gaps = 52/384 (13%)

Query: 5   MLNPQGI--MRWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEES 58
           ML P  I    W+++  + V+ +     ++ +  P++ A II     P++   ++     
Sbjct: 1   MLQPFKIEPRHWLLIIALFVAAFASYKLIEPYLGPIVLAFIISLLFAPLHKRLLALMPTR 60

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
           +   A+++   +  + ++PLL +F   ++     VSK            +W++   GG  
Sbjct: 61  ANTAAMLSCFVLTVIIVIPLLVVFS-SIVHQGTTVSKESY---------QWITS--GG-- 106

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF--------ASRFGMIFLDYCLSII-- 168
             EL+    +HP + K L      +   DF P+         AS+ G   ++    I+  
Sbjct: 107 PKELF----AHPYAQKALFYIDKYSPFHDFDPQVIIQKIATTASQVGSQAINISARILGD 162

Query: 169 ---------FMIIALFFFYRDGFSISQQLDSLGEHLFP---AYWKKISRIVPKVIRSTFL 216
                     M+  LFF  RD    + ++ +   H+ P   +    I   V +V +S  L
Sbjct: 163 ATSILVNFMMMLFVLFFLLRD----NDKMIAAIRHVIPLSRSQEDAIMEEVEQVAKSAVL 218

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNI 275
           G  + A+ +GL  G A WL G P  +  G + A  ++IP  G  + +   S+YLL+ G  
Sbjct: 219 GSFLTAVAQGLAGGFAMWLCGFPG-LFWGSMMAFASLIPVVGTALIWLPASLYLLLVGQW 277

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             A  L  WG I +  +D  +RP L+ G   +  L  FF ++GG++  GL+G+  GP++ 
Sbjct: 278 EWALFLAGWGIIVVGSIDNVVRPLLMQGSSSMNTLLIFFSIIGGIQLFGLIGMIYGPIIF 337

Query: 336 ALIAVIWKESIMAIKENKEKISSN 359
            +  V++K   +  K+  E+  S+
Sbjct: 338 GVTLVLFKMYEVEFKDFLEQQDSH 361


>gi|37680914|ref|NP_935523.1| permease [Vibrio vulnificus YJ016]
 gi|37199664|dbj|BAC95494.1| predicted permease [Vibrio vulnificus YJ016]
          Length = 361

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 163/353 (46%), Gaps = 51/353 (14%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +   ++ A II    +PI+  F SK  +     ++++ V +  + +VPLLF+F       
Sbjct: 32  YINSIIMAFIISLLMFPIHDWFESKMPKHRNMASLLSCVVLTFIIVVPLLFVF------- 84

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP---QSLKILSETFLKTNGI 146
             +V +  + +Q+     +W++   GG+       + L HP   + LK+++E +L  + I
Sbjct: 85  AAIVQQGSVFSQN---TYQWVTH--GGI------QQVLGHPWIVKGLKLVNE-YLPFDNI 132

Query: 147 DF------IPRFASRFGMIFL-----------DYCLSIIFMIIALFFFYRDGFSISQQLD 189
           D       I + A+ FG   +           ++ +    M+  LFF  RD      ++ 
Sbjct: 133 DAKSIAEKIGQLATSFGSNLVAISAKILGDATNFLMDFFLMLFVLFFLLRD----HDKII 188

Query: 190 SLGEHLFP---AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           S   H+ P   +   K+   +  V +S  +G  + AI +G+  G   WLAG P  +  G 
Sbjct: 189 SAIRHILPLSRSQEDKLLSEIENVSKSAVMGSFLTAIAQGIAGGLGMWLAGFPG-LFWGT 247

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +    + IP  G  + +   +IYLL+ G+   A  L +W    +  +D  LRPFL+ G  
Sbjct: 248 MMGFASFIPVVGTALIWIPATIYLLLTGDTGWAIFLAIWSIAIVGSIDNLLRPFLMQGSA 307

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV---IWKESIMAIKENKEK 355
            +  L  FF L+GG++  GL+GL  GP++ A+  V   I++E      + ++ 
Sbjct: 308 GMNTLLIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFKGFLDQQDN 360


>gi|262172300|ref|ZP_06039978.1| predicted permease [Vibrio mimicus MB-451]
 gi|261893376|gb|EEY39362.1| predicted permease [Vibrio mimicus MB-451]
          Length = 361

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 149/345 (43%), Gaps = 17/345 (4%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           L   + ++ +   ++ A II    +PI+  F  K      F A ++ V +  + ++PLLF
Sbjct: 23  LACYWLVEPYINSIVMAFIISLLMFPIHEWFEKKLPSHDNFAAFLSCVVLTVIIVIPLLF 82

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSD---IPGGMWASELWTKHLSHPQSLKILS 137
           +F   + +  +    +     HG  +    S    + G   A+         PQ +    
Sbjct: 83  IFGAIVQQGSKFSQNLYAWVTHG-GIQELFSHPWIVKGLSLANHYLPFEEISPQQIAQRI 141

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
             F  T G + +   A   G     + ++   M+  LFF  RD      ++ S   H+ P
Sbjct: 142 GQFATTFGSNLVSISAKILGDA-TSFVMNFFLMLFVLFFLLRD----HDKIISAIRHILP 196

Query: 198 AYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
               +  R+   +  V +S  +G  + AI +GL  G   WLAG P  +  G +    + I
Sbjct: 197 LSRSQEDRLLNEIENVSKSAVMGSFLTAIAQGLAGGIGMWLAGFPG-LFWGTMMGFASFI 255

Query: 255 PG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P  G  + +   ++YL + G    A  L +W    +  +D  LRPFL+ G   +  L  F
Sbjct: 256 PVVGTALIWIPATLYLFLTGETTWAIFLAIWSIAVVGSIDNLLRPFLMQGSAGMNTLMIF 315

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAV---IWKESIMAIKENKEK 355
           F L+GG++  GL+GL  GP++ A+  V   I++E      + ++K
Sbjct: 316 FSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRGFLDQQDK 360


>gi|296160670|ref|ZP_06843485.1| protein of unknown function UPF0118 [Burkholderia sp. Ch1-1]
 gi|295889196|gb|EFG68999.1| protein of unknown function UPF0118 [Burkholderia sp. Ch1-1]
          Length = 371

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 158/339 (46%), Gaps = 11/339 (3%)

Query: 5   MLNPQGIMRWMIMF--IILV--SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M + Q I R   +F  IILV  SL  L  F   +L   I+ ++SW +Y    +       
Sbjct: 1   MKSDQLIERLAAVFALIILVGGSLLVLAPFTTALLWGAILSYSSWGLYRRLTAALGGRRK 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWA 119
           + A +    ++ + + P ++  +     + ++V+ V    + G+P +P W++ IP    +
Sbjct: 61  WAATLIVFIILIVVLGPFVYAGFAFGAHVHDIVALVQRLFEAGLPDLPSWVARIPLVGSS 120

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL-FFFY 178
            E + + L+   S  I     L      +I   A     I + + L ++ + I L FFFY
Sbjct: 121 IETFWERLTSSNSELIAQLRTLAAPAGKWILAAA-----IAVTHGLGLLALSIVLAFFFY 175

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
             G   +  L++    +       +  +    ++    G+   A+ +G++ G   W+AGV
Sbjct: 176 TGGEGAAAWLNAGMRRIAGERADYLLALAGSTVKGVVYGILGTALVQGILAGFGCWIAGV 235

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P+   LG+ T  +++IPGG  + +   +I+L   G    A  L +WG + + + D  ++P
Sbjct: 236 PAPALLGLATFFLSVIPGGPVVVWLPAAIWLYHGGATGWAIFLVVWGVLVVGMSDNVIKP 295

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
            L+G    +P +    G++GG    G LG+FIGP L+A+
Sbjct: 296 ILIGKNSDMPLILVMLGILGGAFAFGFLGVFIGPTLLAV 334


>gi|149185062|ref|ZP_01863379.1| hypothetical protein ED21_18452 [Erythrobacter sp. SD-21]
 gi|148831173|gb|EDL49607.1| hypothetical protein ED21_18452 [Erythrobacter sp. SD-21]
          Length = 357

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 152/323 (47%), Gaps = 19/323 (5%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           FF P+L A++      P+Y  F+++++   T  A++  + ++   ++P L++    + E 
Sbjct: 33  FFQPLLWAVLAAILFQPLYRWFLTRRKGRETQAALLTLLVILLAVVLPALWIGSAVVAE- 91

Query: 90  KELVSKVVLANQHG-IPVPRW----LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
               +++ LA + G I V  +     S +P  + AS L    L     ++  +  F++ +
Sbjct: 92  ---ATRLFLAFRDGQIDVAMYFEQVFSALPANIQAS-LDRAGLGDLGEVQAQATEFVQAS 147

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            +  I + A   G     + L     +   FF  RDG +IS+Q+ +      P       
Sbjct: 148 -LGLIAQQALAIGGSVFGFVLGFAIALYVGFFLLRDGRAISEQMLA----ALPFERGIAD 202

Query: 205 RIVPK---VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPI 260
           R+  +   ++R+T  G  ++ + +G +    +W+ G+PS + LGVI AI +++P  G  I
Sbjct: 203 RLAERFLVLVRATIKGSVVVGLVQGALGAFTFWIVGIPSVLLLGVIMAIASLLPAVGPAI 262

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +   +IYLL  G I+    + + G   + ++D  LRP LVG    +P        +GG+
Sbjct: 263 VWVPAAIYLLATGAIWQGVVVIVSGVAVIGMIDNVLRPILVGRDTGIPDWLILITTLGGI 322

Query: 321 RTMGLLGLFIGPVLMALIAVIWK 343
              GL G+ IGP++  L    W 
Sbjct: 323 ALFGLSGIVIGPLVAGLFLAGWS 345


>gi|295676075|ref|YP_003604599.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1002]
 gi|295435918|gb|ADG15088.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1002]
          Length = 371

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 158/352 (44%), Gaps = 37/352 (10%)

Query: 5   MLNPQGIMRWMIMFIILV----SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M + Q I R   +F ++V    SL  L  F   +L   I+ ++SW +Y            
Sbjct: 1   MKSDQLIERLAAVFALIVLVGGSLLVLAPFTTALLWGAILSYSSWGLYRRLTGVVGGRRK 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP----- 114
             A +  + ++ + + P ++  +     + E+V+ V    + G+P +P W+  IP     
Sbjct: 61  LAATMIVLIILVVVLGPFVYAGFAFGAHVHEIVALVQRLFESGLPDLPPWVQRIPLVGSS 120

Query: 115 -GGMWA------SELWT--KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
               W       SEL    + L+ P    IL+     T+G+  +               L
Sbjct: 121 IEAFWERLTSSNSELIAQLRTLAAPAGKWILAAALAVTHGLGLL--------------AL 166

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           SI+      FFFY  G   +  L++    +     + +  +    ++    G+   A+ +
Sbjct: 167 SIVLA----FFFYTGGEGAAAWLNAGMRRVAGERAEYLLALAGSTVKGVVYGILGTALVQ 222

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           G++ G  +W+AGVP+   LG++T  ++++PGG  + +   +I+L   G+   A  L +WG
Sbjct: 223 GVLAGFGFWVAGVPAPALLGLVTFFLSVVPGGPVVVWLPAAIWLYQGGSTGWAIFLVVWG 282

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
            + + + D  ++P L+G    +P +    G++GG    G LG+FIGP L+A+
Sbjct: 283 LLVVGMADNVIKPILIGKNSDMPLILVMLGILGGAFAFGFLGVFIGPTLLAV 334


>gi|330447452|ref|ZP_08311101.1| conserved hypothetical protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491643|dbj|GAA05598.1| conserved hypothetical protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 361

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 164/374 (43%), Gaps = 50/374 (13%)

Query: 13  RWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
            W+++  + V+ +     ++ +  P++ A II     P++   ++     +   A+++  
Sbjct: 11  HWLLIIALFVAAFASYKLIEPYLGPIVLAFIISLLFAPLHKRLLALMPTRANTAAMLSCF 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  + ++PLL +F   ++     VSK             W++   GG    EL+    +
Sbjct: 71  ILTVIIVIPLLIVFS-SIVHQGTTVSKESY---------EWITS--GG--PKELF----A 112

Query: 129 HPQSLKILS--------ETFLKTNGIDFIPRFASRFGMIFLDYCLSII-----------F 169
           HP + K L           F     I  I   AS+ G   L+    I+            
Sbjct: 113 HPYAQKALGFIDKYSPFHNFDPQVIIQKIATTASQVGSQALNISARILGDATSILVNFMM 172

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFP---AYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
           M+  LFF  RD    + ++ +   H+ P   +   +I   V +V +S  LG  + A+ +G
Sbjct: 173 MLFVLFFLLRD----NDKMIAAIRHVIPLSRSQEDEIMNEVEQVAKSAVLGSFLTAVAQG 228

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           +  G A WL G P  +  G + A  ++IP  G  + +   S+YLL+ G    A  L  WG
Sbjct: 229 IAGGFAMWLCGFPG-LFWGSMMAFASLIPVVGTALIWLPASLYLLLIGQWEWALFLAGWG 287

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            I +  +D  +RP L+ G   +  L  FF ++GG++  GL+G+  GP++  +  V++K  
Sbjct: 288 VIVVGSIDNVVRPLLMQGSSSMNTLLIFFSIIGGIQLFGLIGMIYGPIIFGVTLVLFKMY 347

Query: 346 IMAIKENKEKISSN 359
            +  K+  E+   N
Sbjct: 348 EVEFKDFLEQQDKN 361


>gi|317402762|gb|EFV83307.1| exported protein [Achromobacter xylosoxidans C54]
          Length = 373

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 16/205 (7%)

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL-------DSLGEHLFPAY 199
            F+   A   G     + +S   M+  LFF  RDG  ++Q++       ++   HLF   
Sbjct: 140 QFLATQALSIGQDTFQFVVSFAIMLYLLFFLLRDGPQLAQRVKRAVPLSETHKHHLF--- 196

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GA 258
                R    V+R+T  G   +A  +G + G  + + G+   +  GVI   ++++P  GA
Sbjct: 197 -----RKFTTVVRATVKGNIAVAASQGALGGIIFSILGIQGALLWGVIMGFLSLLPAVGA 251

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            + +  V+IY L+ G       L  +G + + +VD  LRP LVG   K+P        +G
Sbjct: 252 GLIWAPVAIYFLLTGATIKGVVLIAFGVLVIGMVDNVLRPILVGKDTKMPDYVVLISTLG 311

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWK 343
           G+   GL G  IGP++ AL    W 
Sbjct: 312 GMALFGLNGFVIGPLIAALFMASWD 336


>gi|293604365|ref|ZP_06686772.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292817242|gb|EFF76316.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 365

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 93/198 (46%), Gaps = 2/198 (1%)

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
            F+   A   G     + +S   M+  LFF  RDG  +S ++      L  A+ + + R 
Sbjct: 146 QFLATQALSIGQDTFQFVISFGIMLYLLFFLLRDGPELSARIKR-AMPLSEAHKQHLFRK 204

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAV 265
              V+R+T  G   +A  +G + G  + +  +   +  GVI   ++++P  GA + +  V
Sbjct: 205 FTTVVRATVKGNIAVAAAQGALGGIIFSVLSIQGALLWGVIMGFLSLLPAVGAGLIWAPV 264

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +IY L+ G +     L  +G + + +VD  LRP LVG   K+P        +GG+   GL
Sbjct: 265 AIYFLLTGAVVKGAVLIAFGVLVIGMVDNVLRPILVGKDTKMPDYVVLISTLGGMALFGL 324

Query: 326 LGLFIGPVLMALIAVIWK 343
            G  IGP++ AL    W 
Sbjct: 325 NGFVIGPLIAALFMASWD 342


>gi|308185989|ref|YP_003930120.1| UPF0118 inner membrane protein ydiK [Pantoea vagans C9-1]
 gi|308056499|gb|ADO08671.1| UPF0118 inner membrane protein ydiK [Pantoea vagans C9-1]
          Length = 412

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 150/335 (44%), Gaps = 15/335 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  +F+P+L A I+     P+ +   S+  + +   A+I T+  +CL +   L +    +
Sbjct: 26  LSPYFSPILWAAILAVIFHPLKTWLRSRLGDRNGVAALI-TLFCICLIVFTPLAIIASSL 84

Query: 87  LEMKELVSKVVLANQHGIPV--PRWLSDIPGGMWASE-LWTKHLSHPQSLKILSETFLKT 143
           +     V   +  N    P      L  +P   WA   L   +L + + ++    +F   
Sbjct: 85  VVETNAVYHKLQTNSSQFPAVFADLLQHLP--RWAKHFLAENNLDNAEQIQQKLSSFALK 142

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
            G  ++   A   G     + +    M+  LFF  +DG   S  +  + E L  + + K 
Sbjct: 143 GG-QYVAGSAFIIGKGTFSFTVGFGIMLYLLFFLLKDG---SYLVHLILEALPLSTYVKH 198

Query: 204 SRIV--PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPI 260
             +V    V R+T  G  ++ I +G++ G A+W  G+   +  G + A +++IP  G+ I
Sbjct: 199 HLMVKFAAVARATVKGTVVVGIVQGILGGLAFWFTGIDGSLLWGALMAFLSLIPAVGSAI 258

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +   +I+    G ++    L  +  + + +VD  LRP LVG   K+P        +GG+
Sbjct: 259 IWVPAAIFFFATGALWKGLFLVGFFVVIVGLVDNILRPLLVGKDTKMPDYMILIATLGGM 318

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
              G+ G  IGPV+ AL    W  ++++ ++N+E 
Sbjct: 319 EIYGINGFVIGPVIAALFIACW--NLLSGRDNREN 351


>gi|311087020|gb|ADP67100.1| putative inner membrane protein [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 360

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 128/272 (47%), Gaps = 31/272 (11%)

Query: 99  ANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF------ 152
           +N   +P   WL +IP  +   +++  +           +T L ++G + I +       
Sbjct: 102 SNNLELPELAWLQNIP--LMGRKIFNSY-----------QTLLNSDGGELIHKIRPYMGR 148

Query: 153 ASRFGMIFLDYC-LSIIFMIIALFF---FYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           A+ F +I +  C L II  I+ LFF    Y +G  IS  +      L     K I  +  
Sbjct: 149 ATEFFIIQVRNCGLFIIHSILMLFFSALLYWNGEKISISIHHFAYRLSEKNGKAILLLAT 208

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
           + +R+  LG+ + A+ + L+ G    ++GVP    L +I     +I  G  PI   ++ I
Sbjct: 209 QAVRAVALGVAVTALIQALLSGIGLLVSGVPYWALLMIIIFFSCLIQLGPLPILIPSI-I 267

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +L    +    T L +W    +FI+D  LRPF +     LP L T  G++GG+ T G++G
Sbjct: 268 WLYWNDDTTWGTILLIWSCF-VFILDHILRPFFIRIGADLPILLTLSGVIGGLLTFGMIG 326

Query: 328 LFIGPVLMAL-----IAVIWKESIMAIKENKE 354
           LFIGPV++ +     I+ I+  SI +  EN  
Sbjct: 327 LFIGPVVLVIFYRLTISWIYGISIASFLENTS 358


>gi|85858614|ref|YP_460816.1| hypothetical protein SYN_02943 [Syntrophus aciditrophicus SB]
 gi|85721705|gb|ABC76648.1| hypothetical membrane protein [Syntrophus aciditrophicus SB]
          Length = 363

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 155/334 (46%), Gaps = 28/334 (8%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES---STFLAVIAT-VSVM 71
           I  +I  SL+ L+ F   ++ +++I   +WP    F+ K E        LAV A  ++++
Sbjct: 21  IGILIASSLWILRPFLPSLIWSVMIVVATWP----FMLKMETCLWRKRGLAVAAMMIAML 76

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPG-GMWASELWTKHLSH 129
            LF+VP        +     + + V       +P +P WLS +P  G   +  W    + 
Sbjct: 77  TLFVVPFSLAIVAIIDNADRIAAWVTSFQGQALPALPDWLSGVPVVGSKLNTAWEGVRTG 136

Query: 130 PQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           P+ +   +   +   G  + +    A   G+I L++ L++I   I     Y +G + S+ 
Sbjct: 137 PEGI---AARLVPYAGKLLSWFLSQAGSVGIIALEFLLTVIIAAI----LYVNGETASKG 189

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L     + ++ +  K +R   LG+   A+ + L+ G    +AGVP+     V+
Sbjct: 190 VFQFARRLGGHRGEDVAMLAAKTVRGVALGVVGTALVQSLLGGIGLSVAGVPAAT---VL 246

Query: 248 TAIMAMIP----GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           T +M M+     G   + F AV I+L   G     T L +W  I    +D  LRP L+  
Sbjct: 247 TGVMFMLCIAQLGPGLVLFPAV-IWLYWSGQTTWGTMLLVW-TIFACTIDNLLRPILIKK 304

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
              LP L  F G++GG+ + G++GLFIGPV++++
Sbjct: 305 GADLPMLLIFAGVIGGLASFGIVGLFIGPVVLSV 338


>gi|322832729|ref|YP_004212756.1| hypothetical protein Rahaq_2014 [Rahnella sp. Y9602]
 gi|321167930|gb|ADW73629.1| protein of unknown function UPF0118 [Rahnella sp. Y9602]
          Length = 369

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 168/360 (46%), Gaps = 29/360 (8%)

Query: 16  IMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           I+FI+ ++ +  L+ +++ VL A+I+     P+ +       + +  ++++ TV ++CL 
Sbjct: 14  ILFIVTLAFFDVLRPYYSSVLWAIILAVIFNPLKNRLKQVVGDRNGVVSLL-TVLIICLI 72

Query: 75  I-VPLLFLFYYGMLEMKELVSKVVLANQHGIPV--PRWLSDIPGGMWASELWTKHL--SH 129
           +  PL  +     LE   + +K+   NQ  +PV    ++  +P   WA    + H   S 
Sbjct: 73  VFTPLAIITSSLALEFNAVYTKL-QGNQTQLPVILADFIHHLP--RWARHFLSDHDLDST 129

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG-FSISQQL 188
            +  K LS+  L+  G  ++       G     + +    M+  LFF  +DG + ++  L
Sbjct: 130 AEIQKKLSDVALQ--GSQYLAGSVFVIGKSTFGFVVGFGIMLYILFFLIKDGAYLVNLTL 187

Query: 189 DSL------GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +L        HLF  +          V R+T  G  ++A+ +G + G A+++AG+   +
Sbjct: 188 ATLPLSRYVKHHLFMKF--------AAVSRATVKGTVVVAVVQGALGGIAFYIAGLDGSL 239

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             G + A +++IP  G+ I +   +IY    G ++    +  +  + + IVD  LRP LV
Sbjct: 240 LWGALMAFLSIIPAVGSAIIWVPAAIYFFASGMLWQGIFIVAFFVVVIGIVDNVLRPLLV 299

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK-ESIMAIKENKEKISSNF 360
           G   K+P        +GG+   G+ G  IGP++ AL    W   S    + N ++I+ +F
Sbjct: 300 GKDTKMPDYLILVTTLGGMEVYGINGFVIGPLIAALFIACWNILSGRDHQNNTDEINEDF 359


>gi|307730302|ref|YP_003907526.1| hypothetical protein BC1003_2282 [Burkholderia sp. CCGE1003]
 gi|307584837|gb|ADN58235.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1003]
          Length = 371

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 156/352 (44%), Gaps = 37/352 (10%)

Query: 5   MLNPQGIMRWMIMF--IILV--SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M + Q I R   +F  IILV  SL  L  F   +L   I+ ++SW +Y    +       
Sbjct: 1   MKSDQLIERLAAVFALIILVGGSLLVLAPFTTALLWGAILSYSSWGLYRRLTAAVGGRRR 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP----- 114
           + A +    ++ + + P ++  +     + ++++ V    + G+P +P W++ IP     
Sbjct: 61  WAATLMVFVILIVVLGPFVYAGFAFGAHVHDIIALVQRLFEAGLPDLPPWVARIPVVGSS 120

Query: 115 -GGMWA------SELWT--KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
               W       SEL    + L+ P    ILS     T+G+  +               L
Sbjct: 121 IQSFWETATSSNSELIAQLRTLAAPAGKWILSAAIAVTHGLGLL--------------AL 166

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           SI+      FFFY  G      L++    +       +  +    ++    G+   A+ +
Sbjct: 167 SIVLA----FFFYTGGEGAGAWLNAGMRRIAGERADYLLALAGSTVKGVVYGILGTALVQ 222

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           G++ G   W+AGVP+   LG+ T  +++IPGG  I +   +I+L   G    A  L +WG
Sbjct: 223 GVLAGFGCWIAGVPAPALLGLATFFLSVIPGGPVIVWLPAAIWLYHGGATGWAIFLVVWG 282

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
            + + + D  ++P L+G    +P +    G++GG    G LG+FIGP L+A+
Sbjct: 283 VLVVGMSDNVIKPILIGKNSDMPLILVMLGILGGAFAFGFLGVFIGPTLLAV 334


>gi|197118593|ref|YP_002139020.1| membrane protein [Geobacter bemidjiensis Bem]
 gi|197087953|gb|ACH39224.1| membrane protein UPF0118 [Geobacter bemidjiensis Bem]
          Length = 355

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 89/171 (52%), Gaps = 4/171 (2%)

Query: 178 YRDG-FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
           YRDG  ++S  +  L      A  + ++  +  +  +  +G  +    +G++ G  YW+A
Sbjct: 174 YRDGERAVSVCIAKLAPDQRRA--QHLAAQIRSITTAVTVGTLLTCATQGVLAGLGYWVA 231

Query: 237 GVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
           GVP+ +  G +TAI A++P  G  + +  +   + ++G+  NA  L LW  + + + D  
Sbjct: 232 GVPAPIFCGALTAIAALVPVVGTGVVWVPLVALIAVQGSYLNAVLLALWCILFVGVADNA 291

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           +RP  VG    +  L    G + GV  MG+LGL +GP++ A++  IW + +
Sbjct: 292 IRPLAVGASSDVSVLAVVAGAICGVVIMGVLGLIVGPLIFAVLFSIWDDVV 342


>gi|94495544|ref|ZP_01302124.1| hypothetical protein SKA58_05830 [Sphingomonas sp. SKA58]
 gi|94424932|gb|EAT09953.1| hypothetical protein SKA58_05830 [Sphingomonas sp. SKA58]
          Length = 370

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 152/341 (44%), Gaps = 28/341 (8%)

Query: 18  FIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           F++LVS+ F   ++ FFA +L  +I+     P++    ++    +   A++  + ++ + 
Sbjct: 25  FVLLVSVAFALVIEPFFAAILWGVIVAIVFAPVHHRIRAQMPGRTNAAALLTLLLILLVV 84

Query: 75  IVPLLFL---------FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           IVP   L         ++YG ++  E ++ V L       +P WL       +   L   
Sbjct: 85  IVPAFVLGAALLQEATYFYGKVQSGE-INFVRLFYDVIAALPDWLRP-----YVQRLGIT 138

Query: 126 HLSHPQSL--KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
           +    Q +  + L+ +F    G  F      + G     + +++  M+   FF  RDG  
Sbjct: 139 NFYAAQEMVTRGLTSSFRTLAGQAF------QIGQSAFSFFVALGVMLYLAFFLLRDGDW 192

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +++++ +            I + V  V R+T  G  ++AI +GL+ G  +W   +   + 
Sbjct: 193 LARKVAAAAPLRAGQRTALIEQFV-IVTRATIKGSIVVAIVQGLIGGLVFWALDIQGALL 251

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            GV+    +++P  G  I +  V+IYL   G ++    L + GA+ +  VD  LRP LVG
Sbjct: 252 WGVLMGAFSLLPAIGTAIVWVPVAIYLFATGAVWQGVVLVVCGALVIGSVDNVLRPILVG 311

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              ++P        +GG+   G  G+ IGPV+ AL    W 
Sbjct: 312 RDTRIPDYVVLISTLGGLELFGFNGIVIGPVIAALFIATWN 352


>gi|227328036|ref|ZP_03832060.1| hypothetical protein PcarcW_12170 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 404

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 173/368 (47%), Gaps = 31/368 (8%)

Query: 6   LNPQGIMR-WMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +N +G+ + + I+ + +V+L F   L  +++ +L A ++     P+ S    K  + +  
Sbjct: 1   MNIKGLTKGFFILILFIVTLAFFDILAPYYSAILWAAVLAIIFHPLKSKIRQKLNDRNGV 60

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWAS 120
            +++  + +  L  +PL  +    ++E+  + +++  +N Q  + +   +  +P   WA 
Sbjct: 61  ASLLTVLIIFLLVFIPLGVIVSSLVVEINGVYTRLQDSNTQFPVVLAELIQHLP--KWAR 118

Query: 121 ELWTKHLSHPQSLKI---LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
               +H +   + KI   LS+  LK  G  ++       G     + +    M+  LFF 
Sbjct: 119 HFLAEH-NLDNAAKIQQELSQVVLK--GGQYLAGSVLLIGKGTFTFFIGFGVMLYLLFFL 175

Query: 178 YRDG-FSISQQLDSL------GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
            +DG + ++  L+SL        HL   +          V R+T  G  ++AI +G + G
Sbjct: 176 LKDGAYLVNLILESLPLSTHVKHHLLVKF--------AAVSRATVKGTVVVAIVQGTLGG 227

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
            A+ +AG+   +  G + A +++IP  G+ I +   +++L     ++ A  +  +  + +
Sbjct: 228 IAFSIAGIEGSLLWGSLMAFLSLIPAVGSAIIWVPAAVFLFATDMLWQAIFIVAFFVLVI 287

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            +VD  LRP LVG   K+P        +GG+   G+ G  IGP++ AL    W  +I++ 
Sbjct: 288 GLVDNILRPLLVGKDTKMPDYLILIATLGGMEIYGINGFVIGPLIAALFIACW--NILSG 345

Query: 350 KENKEKIS 357
           ++N+E I 
Sbjct: 346 RDNQENIE 353


>gi|311105126|ref|YP_003977979.1| hypothetical protein AXYL_01931 [Achromobacter xylosoxidans A8]
 gi|310759815|gb|ADP15264.1| hypothetical protein AXYL_01931 [Achromobacter xylosoxidans A8]
          Length = 363

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 92/198 (46%), Gaps = 2/198 (1%)

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
            F+   A   G     + +S   M+  LFF  RDG  +S +L      L   + + + R 
Sbjct: 146 QFLATQALNIGQDTFQFVISFGIMLYLLFFLLRDGPLLSARLKR-AMPLSDTHKQHLLRK 204

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAV 265
              V+R+T  G   +A  +G + G  + +  +   +  GVI   ++++P  GA + +  V
Sbjct: 205 FTTVVRATVKGNVAVAAAQGALGGIIFSILSIQGALLWGVIMGFLSLLPAIGAGLIWAPV 264

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +IY L+ G       L L+G + + +VD  LRP LVG   K+P        +GG+   GL
Sbjct: 265 AIYFLLTGATIKGVVLILFGVLVIGMVDNVLRPILVGKDTKMPDYVVLISTLGGMALFGL 324

Query: 326 LGLFIGPVLMALIAVIWK 343
            G  IGP++ AL    W 
Sbjct: 325 NGFVIGPLIAALFMASWD 342


>gi|170733033|ref|YP_001764980.1| hypothetical protein Bcenmc03_1686 [Burkholderia cenocepacia MC0-3]
 gi|169816275|gb|ACA90858.1| protein of unknown function UPF0118 [Burkholderia cenocepacia
           MC0-3]
          Length = 390

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 150/334 (44%), Gaps = 31/334 (9%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            +I  SLY L+ F   ++ A  I   +WP+    + ++       AVI    VM L ++ 
Sbjct: 36  LLICGSLYILRPFLLALVWAATIVVATWPLLHE-VQRRLRCRRGPAVI----VMLLALMV 90

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIP------VPRWLSDIP-GGMWASELWTKHLSHP 130
           ++ L  YG +      ++ ++    G+P       P WL+ +P  G  A+  W       
Sbjct: 91  VIVLPIYGAVSTLAAHAEEIMTLLKGLPNYTLPPPPGWLAKLPLAGTHATREW------- 143

Query: 131 QSLKILSETFLKTNGIDFIPRFAS----RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           Q+L       +      +  R AS    R   I +     ++ +II    F + G ++  
Sbjct: 144 QTLSDAGPGGVLATLQPYASRLASWLLVRASAIGVLVLHLLLTVIICGILFAK-GEAVGL 202

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +  + + + PA    + R+V   IR+  LG+ + A+ +  + G   W A VP     GV
Sbjct: 203 TVTRVAQCVAPANGAAMVRLVEHAIRAVALGVMVTALAQSALGGLGLWGASVPYA---GV 259

Query: 247 ITAIM---AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           +TAI+    +   G  +   A   +L +      A  LF W ++ +  +D +LRP L+  
Sbjct: 260 LTAILFIFCLAQLGPLLPLLACVTWLFVHDAKLAAILLFGW-SLGVTALDNSLRPILIRR 318

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
            I LP +    G++GG+   G++GLFIGPV++A+
Sbjct: 319 SIALPMVLILAGVLGGLIAFGMIGLFIGPVMLAV 352


>gi|306838115|ref|ZP_07470972.1| transmembrane protein [Brucella sp. NF 2653]
 gi|306406852|gb|EFM63074.1| transmembrane protein [Brucella sp. NF 2653]
          Length = 361

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 159/334 (47%), Gaps = 20/334 (5%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF----YYG 85
           ++  VL A+I+    +P+    +          A ++ +  +CL I+P+L +F      G
Sbjct: 35  YYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAFLSVLMCICLVIIPMLAIFGSLVDEG 94

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL---SHPQSLKILSETFLK 142
               + L S+    N +   + R ++ +P  +   E W K     +       +S   ++
Sbjct: 95  TSLYQRLSSREFDINGY---IARIMAALPESL---EEWLKRFELGTFADWRARISSVVMQ 148

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            + + F  R  S FG   L + +    M+  LFF +RDG  + +++      L   Y ++
Sbjct: 149 GSQL-FAARLVS-FGQNTLQFFIGFGIMLYLLFFLFRDGADVGKKIRR-AIPLSDDYTRQ 205

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPIS 261
                  VIR+T  G  IIAI +G++ G  +WL G+ + +  GVI    +M+P  GA + 
Sbjct: 206 FLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAALLWGVIMTFCSMLPAVGAALV 265

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +T  +++  + G+ ++   L + G + + +VD  LRP LVG   ++P        VGG+ 
Sbjct: 266 WTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLVGKGTRMPDYVVLISTVGGIS 325

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            +G+ G  IGP++ A+    W  S++A +E K++
Sbjct: 326 LIGINGFVIGPLIAAMFIAAW--SLLA-EEQKDQ 356


>gi|237756275|ref|ZP_04584832.1| putative membrane protein [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691557|gb|EEP60608.1| putative membrane protein [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 355

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 88/174 (50%), Gaps = 16/174 (9%)

Query: 173 ALFFFYRDGFSISQQLDSL-------GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
            +FF ++DG+ +   + S+        ++LF   +  +  ++        LG   +AI +
Sbjct: 174 TIFFLFKDGYKLYNLVYSIIPLEKEEKDYLFSNSYAAVQAVI--------LGSVFVAIAQ 225

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLW 284
            +     + +AGV   + L  +T   A IP GGA + +  V+IYL++   +       L+
Sbjct: 226 AIASLIGFLVAGVEYSLVLTFLTFFAAFIPFGGASLVWVPVAIYLIVSKGLLVGILFTLY 285

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           G   +  VD  +RP +VG  I +  +  FF ++GG+ T G LG+FI PV++ALI
Sbjct: 286 GTFVISTVDNIIRPIVVGTKIDMHPMIMFFAIIGGLSTFGFLGIFIAPVIVALI 339


>gi|23500209|ref|NP_699649.1| hypothetical protein BRA0460 [Brucella suis 1330]
 gi|161620528|ref|YP_001594414.1| hypothetical protein BCAN_B0462 [Brucella canis ATCC 23365]
 gi|254699715|ref|ZP_05161543.1| hypothetical protein Bsuib55_02471 [Brucella suis bv. 5 str. 513]
 gi|254702852|ref|ZP_05164680.1| hypothetical protein Bsuib36_02714 [Brucella suis bv. 3 str. 686]
 gi|254706027|ref|ZP_05167855.1| hypothetical protein BpinM_03248 [Brucella pinnipedialis
           M163/99/10]
 gi|254720517|ref|ZP_05182328.1| hypothetical protein Bru83_13551 [Brucella sp. 83/13]
 gi|256015243|ref|YP_003105252.1| hypothetical protein BMI_II457 [Brucella microti CCM 4915]
 gi|256029693|ref|ZP_05443307.1| hypothetical protein BpinM2_03388 [Brucella pinnipedialis
           M292/94/1]
 gi|256157846|ref|ZP_05455764.1| hypothetical protein BcetM4_03193 [Brucella ceti M490/95/1]
 gi|256253192|ref|ZP_05458728.1| hypothetical protein BcetB_02609 [Brucella ceti B1/94]
 gi|260167217|ref|ZP_05754028.1| hypothetical protein BruF5_02324 [Brucella sp. F5/99]
 gi|23463812|gb|AAN33654.1| membrane protein, putative [Brucella suis 1330]
 gi|161337339|gb|ABX63643.1| Hypothetical protein BCAN_B0462 [Brucella canis ATCC 23365]
 gi|255997903|gb|ACU49590.1| hypothetical protein BMI_II457 [Brucella microti CCM 4915]
          Length = 352

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 159/334 (47%), Gaps = 20/334 (5%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF----YYG 85
           ++  VL A+I+    +P+    +          A ++ +  +CL I+P+L +F      G
Sbjct: 26  YYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAFLSVLMCICLVIIPMLAIFGSLVDEG 85

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL---SHPQSLKILSETFLK 142
               + L S+    N +   + R ++ +P  +   E W K     +       +S   ++
Sbjct: 86  TSLYQRLSSREFDINGY---IARIMAALPESL---EEWLKRFELGTFADWRARISSVVMQ 139

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            + + F  R  S FG   L + +    M+  LFF +RDG  + +++      L   Y ++
Sbjct: 140 GSQL-FAARLVS-FGQNTLQFFIGFGIMLYLLFFLFRDGADVGKKIRR-AIPLSDDYTRQ 196

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPIS 261
                  VIR+T  G  IIAI +G++ G  +WL G+ + +  GVI    +M+P  GA + 
Sbjct: 197 FLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAALLWGVIMTFCSMLPAVGAALV 256

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +T  +++  + G+ ++   L + G + + +VD  LRP LVG   ++P        VGG+ 
Sbjct: 257 WTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLVGKGTRMPDYVVLISTVGGIS 316

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            +G+ G  IGP++ A+    W  S++A +E K++
Sbjct: 317 LIGINGFVIGPLIAAMFIAAW--SLLA-EEQKDQ 347


>gi|308446460|ref|XP_003087184.1| hypothetical protein CRE_07198 [Caenorhabditis remanei]
 gi|308260230|gb|EFP04183.1| hypothetical protein CRE_07198 [Caenorhabditis remanei]
          Length = 241

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 68/117 (58%)

Query: 169 FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLV 228
           F I++LFFFYRDG +I +Q+    + L           + +  R+   G+ + A+ +  +
Sbjct: 125 FAIMSLFFFYRDGQTILEQVSKALQMLIGPRIHHYLDTISETTRAVVYGVGLTAVAQAFL 184

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
            G +Y++AGVP+ + L ++T +MA+IP G P+++ AVS++L  +G    A  +  WG
Sbjct: 185 AGVSYFVAGVPNPMVLTIVTFLMALIPFGPPVAYGAVSLWLFSQGQTMEAIGVMAWG 241


>gi|300715132|ref|YP_003739935.1| conserved uncharacterized protein [Erwinia billingiae Eb661]
 gi|299060968|emb|CAX58075.1| conserved uncharacterized protein [Erwinia billingiae Eb661]
          Length = 369

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 167/357 (46%), Gaps = 34/357 (9%)

Query: 15  MIMFIILVS-LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           +I+FI+ V+ L  L  +++ VL A I+     P+ +  + +       LA  AT+ V+CL
Sbjct: 13  LILFIVTVAFLDVLGPYYSSVLWAAILAVIFHPMKTK-LRQMMGDRNGLATFATLVVICL 71

Query: 74  FI-VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI----PGGMWASELWTKHL- 127
            +  PL  L     +E   + +K+     + + +P  ++D+    PG  WA    T+H  
Sbjct: 72  IVFTPLAILVSSMAIEFNVVYTKL---QSNNMQLPTIMADVMQHLPG--WARSFLTEHQL 126

Query: 128 -SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG-FSIS 185
            +  Q  + LS+  ++  G  ++       G     + +    M+  LFF  +DG + ++
Sbjct: 127 DTAAQIQQKLSQVAMQ--GGQYLAGSVFLIGKSTFGFTVGFGIMLYLLFFLLKDGAYLVN 184

Query: 186 QQLDSL------GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
             L++L        HLF  +          V R+T  G  ++A+ +G +   A+W+ G+ 
Sbjct: 185 LILEALPLSSYVKHHLFMKF--------AAVSRATVKGTVVVAVVQGALGALAFWITGID 236

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             +  G + A +++IP  G+ I +   +I+    G ++    +  +  + + +VD  LRP
Sbjct: 237 GILLWGALIAFLSLIPAVGSAIVWVPAAIFFFASGVLWKGLFIVGFFVVVIGLVDNILRP 296

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            LVG   K+P        +GG+   G+ G  IGP++ A+    W  ++++ ++N+E 
Sbjct: 297 LLVGKDTKMPDYLILIATLGGMEIYGINGFVIGPLIAAMFIACW--NLLSGRDNREN 351


>gi|15616743|ref|NP_239955.1| putative inner membrane protein [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11387270|sp|P57223|Y123_BUCAI RecName: Full=UPF0118 membrane protein BU123
 gi|25307062|pir||A84944 hypothetical protein yb1688 [imported] - Buchnera sp.  (strain APS)
 gi|10038806|dbj|BAB12841.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
          Length = 360

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 128/272 (47%), Gaps = 31/272 (11%)

Query: 99  ANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF------ 152
           +N   +P   WL +IP  +   +++  +           +T L ++G + I +       
Sbjct: 102 SNDLELPELAWLQNIP--LMGRKIFNSY-----------QTLLNSDGGELIHKIRPYMGH 148

Query: 153 ASRFGMIFLDYC-LSIIFMIIALFF---FYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           A+ F +I +  C L I+  I+ LFF    Y +G  IS  +      L     K I  +  
Sbjct: 149 ATEFFIIQVRNCGLFIVHSILMLFFSALLYWNGEKISISIHHFAYRLSEKNGKAILLLAT 208

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
           + +R+  LG+ + A+ + L+ G    ++GVP    L +I     +I  G  PI   ++ I
Sbjct: 209 QAVRAVALGVAVTALIQALLSGIGLLVSGVPYWALLMIIIFFSCLIQLGPLPILIPSI-I 267

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +L    +    T L +W    +FI+D  LRPF +     LP L T  G++GG+ T G++G
Sbjct: 268 WLYWNDDTTWGTILLIWSCF-VFILDHILRPFFIRIGADLPILLTLSGVIGGLLTFGMIG 326

Query: 328 LFIGPVLMAL-----IAVIWKESIMAIKENKE 354
           LFIGPV++ +     I+ I+  SI +  EN  
Sbjct: 327 LFIGPVVLVIFYRLTISWIYGISIASFLENTS 358


>gi|148558731|ref|YP_001257437.1| hypothetical protein BOV_A0400 [Brucella ovis ATCC 25840]
 gi|225628899|ref|ZP_03786933.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
 gi|148370016|gb|ABQ62888.1| putative membrane protein [Brucella ovis ATCC 25840]
 gi|225616745|gb|EEH13793.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
          Length = 372

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 159/334 (47%), Gaps = 20/334 (5%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF----YYG 85
           ++  VL A+I+    +P+    +          A ++ +  +CL I+P+L +F      G
Sbjct: 46  YYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAFLSVLMCICLVIIPMLAIFGSLVDEG 105

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL---SHPQSLKILSETFLK 142
               + L S+    N +   + R ++ +P  +   E W K     +       +S   ++
Sbjct: 106 TSLYQRLSSREFDINGY---IARIMAALPESL---EEWLKRFELGTFADWRARISSVVMQ 159

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            + + F  R  S FG   L + +    M+  LFF +RDG  + +++      L   Y ++
Sbjct: 160 GSQL-FAARLVS-FGQNTLQFFIGFGIMLYLLFFLFRDGADVGKKIRR-AIPLSDDYTRQ 216

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPIS 261
                  VIR+T  G  IIAI +G++ G  +WL G+ + +  GVI    +M+P  GA + 
Sbjct: 217 FLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAALLWGVIMTFCSMLPAVGAALV 276

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +T  +++  + G+ ++   L + G + + +VD  LRP LVG   ++P        VGG+ 
Sbjct: 277 WTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLVGKGTRMPDYVVLISTVGGIS 336

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            +G+ G  IGP++ A+    W  S++A +E K++
Sbjct: 337 LIGINGFVIGPLIAAMFIAAW--SLLA-EEQKDQ 367


>gi|260568237|ref|ZP_05838706.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|261220299|ref|ZP_05934580.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261313468|ref|ZP_05952665.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261750180|ref|ZP_05993889.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261753452|ref|ZP_05997161.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|261756621|ref|ZP_06000330.1| conserved hypothetical protein [Brucella sp. F5/99]
 gi|265985549|ref|ZP_06098284.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|265986704|ref|ZP_06099261.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|265996354|ref|ZP_06108911.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|294853728|ref|ZP_06794400.1| hypothetical protein BAZG_02708 [Brucella sp. NVSL 07-0026]
 gi|260154902|gb|EEW89983.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|260918883|gb|EEX85536.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261302494|gb|EEY05991.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261736605|gb|EEY24601.1| conserved hypothetical protein [Brucella sp. F5/99]
 gi|261739933|gb|EEY27859.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261743205|gb|EEY31131.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|262550651|gb|EEZ06812.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|264658901|gb|EEZ29162.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|264664141|gb|EEZ34402.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|294819383|gb|EFG36383.1| hypothetical protein BAZG_02708 [Brucella sp. NVSL 07-0026]
          Length = 354

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 159/334 (47%), Gaps = 20/334 (5%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF----YYG 85
           ++  VL A+I+    +P+    +          A ++ +  +CL I+P+L +F      G
Sbjct: 28  YYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAFLSVLMCICLVIIPMLAIFGSLVDEG 87

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL---SHPQSLKILSETFLK 142
               + L S+    N +   + R ++ +P  +   E W K     +       +S   ++
Sbjct: 88  TSLYQRLSSREFDINGY---IARIMAALPESL---EEWLKRFELGTFADWRARISSVVMQ 141

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            + + F  R  S FG   L + +    M+  LFF +RDG  + +++      L   Y ++
Sbjct: 142 GSQL-FAARLVS-FGQNTLQFFIGFGIMLYLLFFLFRDGADVGKKIRR-AIPLSDDYTRQ 198

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPIS 261
                  VIR+T  G  IIAI +G++ G  +WL G+ + +  GVI    +M+P  GA + 
Sbjct: 199 FLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAALLWGVIMTFCSMLPAVGAALV 258

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +T  +++  + G+ ++   L + G + + +VD  LRP LVG   ++P        VGG+ 
Sbjct: 259 WTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLVGKGTRMPDYVVLISTVGGIS 318

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            +G+ G  IGP++ A+    W  S++A +E K++
Sbjct: 319 LIGINGFVIGPLIAAMFIAAW--SLLA-EEQKDQ 349


>gi|219681498|ref|YP_002467883.1| hypothetical protein BUAP5A_121 [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471179|ref|ZP_05635178.1| putative inner membrane protein [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219624341|gb|ACL30496.1| hypothetical protein BUAP5A_121 [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 360

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 128/272 (47%), Gaps = 31/272 (11%)

Query: 99  ANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF------ 152
           +N   +P   WL +IP  +   +++  +           +T L ++G + I +       
Sbjct: 102 SNDLELPELAWLQNIP--LMGRKIFNSY-----------QTLLNSDGGELIHKIRPYMGR 148

Query: 153 ASRFGMIFLDYC-LSIIFMIIALFF---FYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           A+ F +I +  C L I+  I+ LFF    Y +G  IS  +      L     K I  +  
Sbjct: 149 ATEFFIIQVRNCGLFIVHSILMLFFSALLYWNGEKISISIHHFAYRLSEKNGKAILLLAT 208

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
           + +R+  LG+ + A+ + L+ G    ++GVP    L +I     +I  G  PI   ++ I
Sbjct: 209 QAVRAVALGVAVTALIQALLSGIGLLVSGVPYWALLMIIIFFSCLIQLGPLPILIPSI-I 267

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +L    +    T L +W    +FI+D  LRPF +     LP L T  G++GG+ T G++G
Sbjct: 268 WLYWNDDTTWGTILLIWSCF-VFILDHILRPFFIRIGADLPILLTLSGVIGGLLTFGMIG 326

Query: 328 LFIGPVLMAL-----IAVIWKESIMAIKENKE 354
           LFIGPV++ +     I+ I+  SI +  EN  
Sbjct: 327 LFIGPVVLVIFYRLTISWIYGISIASFLENTS 358


>gi|219682054|ref|YP_002468438.1| hypothetical protein BUAPTUC7_122 [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219621787|gb|ACL29943.1| hypothetical protein BUAPTUC7_122 [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|311085867|gb|ADP65949.1| putative inner membrane protein [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086437|gb|ADP66518.1| putative inner membrane protein [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 360

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 128/272 (47%), Gaps = 31/272 (11%)

Query: 99  ANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF------ 152
           +N   +P   WL +IP  +   +++  +           +T L ++G + I +       
Sbjct: 102 SNDLELPELAWLQNIP--LMGRKIFNSY-----------QTLLNSDGGELIHKIRPYMGR 148

Query: 153 ASRFGMIFLDYC-LSIIFMIIALFF---FYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           A+ F ++ +  C L II  I+ LFF    Y +G  IS  +      L     K I  +  
Sbjct: 149 ATEFFIVQVRNCGLFIIHSILMLFFSALLYWNGEKISISIHHFAYRLSEKNGKAILLLAT 208

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
           + +R+  LG+ + A+ + L+ G    ++GVP    L +I     +I  G  PI   ++ I
Sbjct: 209 QAVRAVALGVAVTALIQALLSGIGLLVSGVPYWALLMIIIFFSCLIQLGPLPILIPSI-I 267

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +L    +    T L +W    +FI+D  LRPF +     LP L T  G++GG+ T G++G
Sbjct: 268 WLYWNDDTTWGTILLIWSCF-VFILDHILRPFFIRIGADLPILLTLSGVIGGLLTFGMIG 326

Query: 328 LFIGPVLMAL-----IAVIWKESIMAIKENKE 354
           LFIGPV++ +     I+ I+  SI +  EN  
Sbjct: 327 LFIGPVVLVIFYRLTISWIYGISIASFLENTS 358


>gi|320155419|ref|YP_004187798.1| putative permease [Vibrio vulnificus MO6-24/O]
 gi|319930731|gb|ADV85595.1| predicted permease [Vibrio vulnificus MO6-24/O]
          Length = 361

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 162/353 (45%), Gaps = 51/353 (14%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +   ++ A II    +PI+  F SK  +     ++++ V +  + +VPLLF+F       
Sbjct: 32  YINSIIMAFIISLLMFPIHDWFESKMPKHRNMASLLSCVVLTFIIVVPLLFVF------- 84

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP---QSLKILSETFLKTNGI 146
             +V +  + +Q+     +W++   GG+       + L HP   + LK+++E +L  + I
Sbjct: 85  AAIVQQGSVFSQN---TYQWVTH--GGI------QQVLGHPWIVKGLKLVNE-YLPFDNI 132

Query: 147 DF------IPRFASRFGMIFL-----------DYCLSIIFMIIALFFFYRDGFSISQQLD 189
           D       I + A+ FG   +           ++ +    M+  LFF  RD      ++ 
Sbjct: 133 DAKSIAEKIGQLATSFGSNLVAISAKILGDATNFLMDFFLMLFVLFFLLRD----HDKII 188

Query: 190 SLGEHLFP---AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           S   H+ P   +   K+   +  V +S  +G  + AI +G+  G   WLAG P  +  G 
Sbjct: 189 SAIRHILPLSRSQEDKLLSEIENVSKSAVMGSFLTAIAQGIAGGLGMWLAGFPG-LFWGT 247

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +    + IP  G  + +   +IYL + G+   A  L +W    +  +D  LRPFL+ G  
Sbjct: 248 MMGFASFIPVVGTALIWIPATIYLFLTGDTGWAIFLAIWSIAIVGSIDNLLRPFLMQGSA 307

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV---IWKESIMAIKENKEK 355
            +  L  FF L+GG++  GL+GL  GP++ A+  V   I++E      + ++ 
Sbjct: 308 GMNTLLIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFKGFLDQQDN 360


>gi|198283230|ref|YP_002219551.1| hypothetical protein Lferr_1102 [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218666938|ref|YP_002425462.1| hypothetical protein AFE_0988 [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198247751|gb|ACH83344.1| protein of unknown function UPF0118 [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519151|gb|ACK79737.1| membrane protein, putative [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 346

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 72/132 (54%)

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           RS  +G+  + + EG+ +G AY +AG+       V TA+++ IP GA     A +++L  
Sbjct: 205 RSVLIGLIGVGVVEGMFIGIAYAVAGLGMWPLWLVATALISPIPFGATAVVGAATLWLAF 264

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
            G+ F    + +WG I +   D  +RP L G   + PF   FF ++GG    GL+GL IG
Sbjct: 265 TGHWFAGLLVLIWGLIVITAADLVVRPLLTGSQTQAPFFLVFFSILGGAEAFGLIGLIIG 324

Query: 332 PVLMALIAVIWK 343
           P+L+ L   +W+
Sbjct: 325 PILVLLARGVWR 336


>gi|254712287|ref|ZP_05174098.1| hypothetical protein BcetM6_02689 [Brucella ceti M644/93/1]
 gi|254715358|ref|ZP_05177169.1| hypothetical protein BcetM_02704 [Brucella ceti M13/05/1]
          Length = 352

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 159/334 (47%), Gaps = 20/334 (5%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF----YYG 85
           ++  VL A+I+    +P+    +          A ++ +  +CL I+P+L +F      G
Sbjct: 26  YYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAFLSVLMCICLVIIPMLAVFGSLVDEG 85

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL---SHPQSLKILSETFLK 142
               + L S+    N +   + R ++ +P  +   E W K     +       +S   ++
Sbjct: 86  TSLYQRLSSREFDINGY---IARIMAALPESL---EEWLKRFELGTFADWRARISSVVMQ 139

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            + + F  R  S FG   L + +    M+  LFF +RDG  + +++      L   Y ++
Sbjct: 140 GSQL-FAARLVS-FGQNTLQFFIGFGIMLYLLFFLFRDGADVGKKIRR-AIPLSDDYTRQ 196

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPIS 261
                  VIR+T  G  IIAI +G++ G  +WL G+ + +  GVI    +M+P  GA + 
Sbjct: 197 FLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAALLWGVIMTFCSMLPAVGAALV 256

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +T  +++  + G+ ++   L + G + + +VD  LRP LVG   ++P        VGG+ 
Sbjct: 257 WTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLVGKGTRMPDYVVLISTVGGIS 316

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            +G+ G  IGP++ A+    W  S++A +E K++
Sbjct: 317 LIGINGFVIGPLIAAMFIAAW--SLLA-EEQKDQ 347


>gi|163785444|ref|ZP_02180051.1| hypothetical protein HG1285_05465 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879288|gb|EDP73185.1| hypothetical protein HG1285_05465 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 286

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 113/229 (49%), Gaps = 15/229 (6%)

Query: 120 SELWTKHLSHPQSL--KILSETFLKTNGIDFIPRF-ASRFGMIFLDY---CLSIIFMIIA 173
           S L  K +S+ Q+L  K+  + FLKT  I ++  F  S+   IF+D+    L II MII 
Sbjct: 49  SYLHEKIISYLQTLNIKVDIQDFLKT-AISYVVNFLISKGRTIFIDFSFIVLGIILMIIT 107

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP---KVIRSTFLGMTIIAIGEGLVLG 230
           +FF ++DG    +        L P   K+ + I       I+   LG  + AI +G++  
Sbjct: 108 IFFLFKDG----KNFYIWIYKLIPMEEKEKNYIAVSSYNTIQGIVLGSFLTAIAQGILSF 163

Query: 231 SAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
             Y+ +GV   +   +IT   A IP GGA + +  +++YL     +       L+G   +
Sbjct: 164 IGYYFSGVGFSLFWAIITFFSAFIPIGGASLIWVPIAVYLFFTKGLIVGILFSLYGTFII 223

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             VD  ++P ++GG   +  L   F + GG+   G +G+FI P+++ +I
Sbjct: 224 STVDNIIKPIVIGGKANIHPLIMIFAIFGGLNLFGFVGVFIAPIIVVII 272


>gi|261217086|ref|ZP_05931367.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261319956|ref|ZP_05959153.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|260922175|gb|EEX88743.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261292646|gb|EEX96142.1| conserved hypothetical protein [Brucella ceti M644/93/1]
          Length = 354

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 159/334 (47%), Gaps = 20/334 (5%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF----YYG 85
           ++  VL A+I+    +P+    +          A ++ +  +CL I+P+L +F      G
Sbjct: 28  YYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAFLSVLMCICLVIIPMLAVFGSLVDEG 87

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL---SHPQSLKILSETFLK 142
               + L S+    N +   + R ++ +P  +   E W K     +       +S   ++
Sbjct: 88  TSLYQRLSSREFDINGY---IARIMAALPESL---EEWLKRFELGTFADWRARISSVVMQ 141

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            + + F  R  S FG   L + +    M+  LFF +RDG  + +++      L   Y ++
Sbjct: 142 GSQL-FAARLVS-FGQNTLQFFIGFGIMLYLLFFLFRDGADVGKKIRR-AIPLSDDYTRQ 198

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPIS 261
                  VIR+T  G  IIAI +G++ G  +WL G+ + +  GVI    +M+P  GA + 
Sbjct: 199 FLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAALLWGVIMTFCSMLPAVGAALV 258

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +T  +++  + G+ ++   L + G + + +VD  LRP LVG   ++P        VGG+ 
Sbjct: 259 WTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLVGKGTRMPDYVVLISTVGGIS 318

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            +G+ G  IGP++ A+    W  S++A +E K++
Sbjct: 319 LIGINGFVIGPLIAAMFIAAW--SLLA-EEQKDQ 349


>gi|91775579|ref|YP_545335.1| hypothetical protein Mfla_1226 [Methylobacillus flagellatus KT]
 gi|91709566|gb|ABE49494.1| protein of unknown function UPF0118 [Methylobacillus flagellatus
           KT]
          Length = 352

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 145/342 (42%), Gaps = 26/342 (7%)

Query: 16  IMFIILVS---LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           +  ++LVS   +  L  F+  V   +I+     P+Y   +         LA + T+S  C
Sbjct: 12  VFLLLLVSAGLIIILLPFYGAVFWGVILSILFTPLYRRLLVTTRNRKN-LAALGTLSA-C 69

Query: 73  LFIVPLLFLFYYGML--EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + IV +  +     L  E   L  K+     +     + + D         L    LS  
Sbjct: 70  IIIVIVPVIIIASSLVHEGTMLFQKIKTGQINPALYTQQILDATPAPVHRILERVGLSDV 129

Query: 131 QSLK-ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
           QS +  LS+  L   G   +   A   G     + +    M+  +FF  RDG S+S ++ 
Sbjct: 130 QSFQEKLSQ--LAMEGSQLLATKALSIGQNTFQFVVGFAVMLYLMFFLLRDGSSLSIRVK 187

Query: 190 SL-------GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                      HLF  +          VIR+T  G  ++AI +G + G  +W+ G+ + +
Sbjct: 188 QAIPLSAEHKRHLFNKF--------TTVIRATVKGNILVAITQGALGGLIFWILGIQAAL 239

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
              VI A ++++P  GA + +  V++Y L  G I+    L  +G   + +VD  LRP LV
Sbjct: 240 LWAVIMAFLSLLPAVGASLIWAPVAVYFLATGAIWQGVILIAFGVFVIGLVDNILRPILV 299

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           G   KLP        +GG+   GL G  IGP++ AL   +W 
Sbjct: 300 GKDTKLPDYVVLISTLGGMAVFGLNGFVIGPLIAALFITMWD 341


>gi|255022092|ref|ZP_05294096.1| protein of unknown function UPF0118 [Acidithiobacillus caldus ATCC
           51756]
 gi|254968450|gb|EET26008.1| protein of unknown function UPF0118 [Acidithiobacillus caldus ATCC
           51756]
          Length = 343

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 75/136 (55%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           +  RS  +G+  + + EG+++G A+ +AG+       V TA+++ IP GA     A +++
Sbjct: 199 EAARSVLIGLIGVGVIEGILIGIAFAVAGLKMWPLWLVATALISPIPFGATTVVGAATLW 258

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L   G+      +F WG + + + D  +RP L G   + PF   FF ++GG +  GL+GL
Sbjct: 259 LAFSGHWLVGLIIFAWGLVVITVADLVIRPLLTGSQTRAPFFLVFFSILGGAQAFGLIGL 318

Query: 329 FIGPVLMALIAVIWKE 344
            IGP+L+ +   IW+ 
Sbjct: 319 IIGPILVLMARGIWRS 334


>gi|54307733|ref|YP_128753.1| putative permease [Photobacterium profundum SS9]
 gi|46912156|emb|CAG18951.1| putative permease [Photobacterium profundum SS9]
          Length = 361

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 164/358 (45%), Gaps = 50/358 (13%)

Query: 13  RWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
            WM++  + +++Y     ++ +  P++ A II    +P+++   SK        A+++ +
Sbjct: 11  HWMLIVALGIAVYASYRLIEPYIGPIVMAFIISLLYYPLHARIESKISNKPNSAAILSCI 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  + ++PLL +F         +V +    ++       W S   GG  A EL    L+
Sbjct: 71  LLTFIIVIPLLIVF-------SSIVHQGTTFSKDSY---TWFSS--GG--AKEL----LA 112

Query: 129 HP--QSLKILSETFLKTNGIDF------IPRFASRFGMIFLD-----------YCLSIIF 169
           HP  Q + +L E +    GID       I   AS+FG   L+           + +S + 
Sbjct: 113 HPYVQKVLLLIEKWSPFEGIDTQAILQKIASAASKFGAQLLNISAKILGDATNFVISFML 172

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEG 226
           M+  LFF  RD      ++ +   H+ P    +   +   V +V +S  LG  + A+ +G
Sbjct: 173 MLFVLFFLLRD----HTKMVNAVRHVLPLSRSQEDVLLTEVEQVAKSAVLGSFLTALAQG 228

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWG 285
              G A WLAG P  +  G + A  + IP  G  + +   ++YLL+      A  L  WG
Sbjct: 229 FAGGFAMWLAGFPG-LFWGSMMAFASFIPVFGTALIWLPATLYLLLINQWEWALFLSGWG 287

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            I +  +D  LRP L+ G   +  L  FF ++GG+   GL+GL  GP++ A+  V++K
Sbjct: 288 IIVVGSIDNILRPLLMQGNSGMNTLLIFFSILGGLHLFGLIGLIYGPIIFAVTLVLFK 345


>gi|297580751|ref|ZP_06942677.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297535167|gb|EFH74002.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 361

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 154/347 (44%), Gaps = 21/347 (6%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           L   + ++ +   ++ A II    +PI+  F  K    +   A ++ V +  + ++PLLF
Sbjct: 23  LACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAAFLSCVVLTVIIVIPLLF 82

Query: 81  LFYYGMLEMKELVSKVVLA--NQHGIPV---PRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +F   +++     S+ + A   Q GI       W+  + G   A+         PQ +  
Sbjct: 83  IFG-AIIQQGSKFSQNLYAWVTQGGIQALFNHPWV--VKGLSLANHYLPFEEISPQQIAQ 139

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
               F  T G + +   A   G     + +    M+  LFF  RD      ++ S   H+
Sbjct: 140 RIGQFATTFGSNLVSISAKILGDA-TSFVMHFFLMLFVLFFLLRD----HDKIISAIRHI 194

Query: 196 FPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            P    +  R+   +  V +S  +G  + AI +G+  G   WLAG P  +  G +    +
Sbjct: 195 LPLSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAGGIGMWLAGFPG-LFWGTMMGFAS 253

Query: 253 MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            IP  G  + +   ++YL + G+   A  L +W    +  +D  LRPFL+ G   +  L 
Sbjct: 254 FIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAVVGSIDNLLRPFLMQGSAGMNTLM 313

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAV---IWKESIMAIKENKEK 355
            FF L+GG++  GL+GL  GP++ A+  V   I++E   +  + +++
Sbjct: 314 IFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQQDR 360


>gi|304415417|ref|ZP_07396069.1| putative inner membrane protein [Candidatus Regiella insecticola
           LSR1]
 gi|304282733|gb|EFL91244.1| putative inner membrane protein [Candidatus Regiella insecticola
           LSR1]
          Length = 353

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 155/327 (47%), Gaps = 14/327 (4%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I+ +++ S   ++ F   +  A+++  T+WP+                ++ T+ ++  F+
Sbjct: 21  ILTMMITSFLVIQPFIIGLTWAVMVVITTWPLLIKLQIVLWGRRVLAVIVMTLLLILFFV 80

Query: 76  VPLLFLFYYGMLEMKELVS-KVVLANQHGIPVPRWLSDIPGGMWASELWT--KHLSHPQS 132
           +P+  L    ++    LV+     AN H  P   WL+ IP  +  S+++    +L    +
Sbjct: 81  IPIALLVNSLLINSAPLVAWASSPANMH-FPEMEWLNAIP--LIGSKIYNSWHNLVEGGA 137

Query: 133 LKILSET--FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            ++L++   ++      F+ + A+  G   +   L ++F ++    FY  G  ++Q +  
Sbjct: 138 NELLAKLRPYVGEATTWFVAQ-AAHLGRFVVHLALMVLFSVL----FYFHGERVAQGIRR 192

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
               L       +  +  + IR+  LG+ + A+ + ++ G A  +AG+P    L V+  I
Sbjct: 193 FAVRLADEKGDSVIVLAAQSIRAVALGLVVTALIQAVLGGIALAMAGIPYATLLTVLMFI 252

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + ++  G  +      I+L   G+    + L +W  I L   D  LRP L+     LP +
Sbjct: 253 LCVVQLGPLLVLIPAIIWLYWSGDTTWGSILLVWSGI-LGTFDAVLRPALIRRGADLPMI 311

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMAL 337
              FG++GG+ ++G++GLFIGPV++A+
Sbjct: 312 LILFGVIGGLLSLGMIGLFIGPVVLAV 338


>gi|304395632|ref|ZP_07377515.1| protein of unknown function UPF0118 [Pantoea sp. aB]
 gi|304356926|gb|EFM21290.1| protein of unknown function UPF0118 [Pantoea sp. aB]
          Length = 412

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 148/342 (43%), Gaps = 23/342 (6%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  +F+ +L A I+     P+  +++  +      +A + T+  +CL +   L +    +
Sbjct: 26  LSPYFSSILWAAILAVIFHPL-KTWLRNRLGDRNGVAALITLLCICLIVFTPLAIIASSL 84

Query: 87  LEMKELVSKVVLANQHGIPV--PRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
           +     V   +  N    PV     L  +P        W KH     +L    +   K +
Sbjct: 85  VVETNAVYHKLQTNSSQFPVVFADLLQHLP-------RWAKHFLAENNLDNAGQIQQKLS 137

Query: 145 -----GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
                G  ++   A   G     + +    M+  LFF  +DG   S  +  + E L  + 
Sbjct: 138 SFALKGGQYVAGSAFIIGKGTFSFTVGFGIMLYLLFFLLKDG---SYLVHLILEALPLST 194

Query: 200 WKKISRIV--PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG- 256
           + K   +V    V R+T  G  ++ I +G++ G A+W  G+   +  G + A +++IP  
Sbjct: 195 YVKHHLMVKFAAVARATVKGTVVVGIVQGILGGLAFWFTGIDGSLLWGALMAFLSLIPAV 254

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           G+ I +   +I+    G ++    L  +  + + +VD  LRP LVG   K+P        
Sbjct: 255 GSAIIWVPAAIFFFATGALWKGLFLVGFFVVIVGLVDNILRPLLVGKDTKMPDYMILIAT 314

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +GG+   G+ G  IGPV+ AL    W  ++++ ++N+E I +
Sbjct: 315 LGGMEIYGINGFVIGPVIAALFIACW--NLLSGRDNRENIEA 354


>gi|262191799|ref|ZP_06049971.1| hypothetical protein VIH_002174 [Vibrio cholerae CT 5369-93]
 gi|262032333|gb|EEY50899.1| hypothetical protein VIH_002174 [Vibrio cholerae CT 5369-93]
          Length = 361

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 154/347 (44%), Gaps = 21/347 (6%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           L   + ++ +   ++ A II    +PI+  F  K    +   A ++ V +  + ++PLLF
Sbjct: 23  LACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAAFLSCVVLTVIIVIPLLF 82

Query: 81  LFYYGMLEMKELVSKVVLA--NQHGIPV---PRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +F   +++     S+ + A   Q GI       W+  + G   A+         PQ +  
Sbjct: 83  IFG-AIVQQGSKFSQNLYAWVTQGGIQALFNHPWV--VKGLSLANHYLPFEEISPQQIAQ 139

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
               F  T G + +   A   G     + +    M+  LFF  RD      ++ S   H+
Sbjct: 140 RIGQFATTFGSNLVSISAKILGDA-TSFVMHFFLMLFVLFFLLRD----HDKIISAIRHI 194

Query: 196 FPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            P    +  R+   +  V +S  +G  + AI +G+  G   WLAG P  +  G +    +
Sbjct: 195 LPLSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAGGIGMWLAGFPG-LFWGTMMGFAS 253

Query: 253 MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            IP  G  + +   ++YL + G+   A  L +W    +  +D  LRPFL+ G   +  L 
Sbjct: 254 FIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAVVGSIDNLLRPFLMQGSAGMNTLM 313

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAV---IWKESIMAIKENKEK 355
            FF L+GG++  GL+GL  GP++ A+  V   I++E   +  + +++
Sbjct: 314 IFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQQDR 360


>gi|229530430|ref|ZP_04419818.1| hypothetical protein VCG_003550 [Vibrio cholerae 12129(1)]
 gi|229332203|gb|EEN97691.1| hypothetical protein VCG_003550 [Vibrio cholerae 12129(1)]
 gi|327483427|gb|AEA77834.1| Predicted permease [Vibrio cholerae LMA3894-4]
          Length = 361

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 154/347 (44%), Gaps = 21/347 (6%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           L   + ++ +   ++ A II    +PI+  F  K    +   A ++ V +  + ++PLLF
Sbjct: 23  LACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAAFLSCVVLTVIIVIPLLF 82

Query: 81  LFYYGMLEMKELVSKVVLA--NQHGIPV---PRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +F   +++     S+ + A   Q GI       W+  + G   A+         PQ +  
Sbjct: 83  IFG-AIVQQGSKFSQNLYAWVTQGGIQALFNHPWV--VKGLSLANHYLPFEEISPQQIAQ 139

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
               F  T G + +   A   G     + +    M+  LFF  RD  +I   +     H+
Sbjct: 140 RIGQFATTFGSNLVSISAKILGDA-TSFVMHFFLMLFVLFFLLRDHDTIISAI----RHI 194

Query: 196 FPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            P    +  R+   +  V +S  +G  + AI +G+  G   WLAG P  +  G +    +
Sbjct: 195 LPLSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAGGIGMWLAGFPG-LFWGTMMGFAS 253

Query: 253 MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            IP  G  + +   ++YL + G+   A  L +W    +  +D  LRPFL+ G   +  L 
Sbjct: 254 FIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAVVGSIDNLLRPFLMQGSAGMNTLM 313

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAV---IWKESIMAIKENKEK 355
            FF L+GG++  GL+GL  GP++ A+  V   I++E   +  + +++
Sbjct: 314 IFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQQDR 360


>gi|121587957|ref|ZP_01677711.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121728275|ref|ZP_01681307.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|147673733|ref|YP_001216117.1| putative lipoprotein [Vibrio cholerae O395]
 gi|153801764|ref|ZP_01956350.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|153818917|ref|ZP_01971584.1| lipoprotein, putative [Vibrio cholerae NCTC 8457]
 gi|153822992|ref|ZP_01975659.1| lipoprotein, putative [Vibrio cholerae B33]
 gi|153825679|ref|ZP_01978346.1| lipoprotein, putative [Vibrio cholerae MZO-2]
 gi|227080805|ref|YP_002809356.1| hypothetical protein VCM66_0582 [Vibrio cholerae M66-2]
 gi|229505753|ref|ZP_04395263.1| hypothetical protein VCF_000964 [Vibrio cholerae BX 330286]
 gi|229509213|ref|ZP_04398698.1| hypothetical protein VCE_000613 [Vibrio cholerae B33]
 gi|229519577|ref|ZP_04409020.1| hypothetical protein VCC_003609 [Vibrio cholerae RC9]
 gi|229520915|ref|ZP_04410337.1| hypothetical protein VIF_001439 [Vibrio cholerae TM 11079-80]
 gi|229608864|ref|YP_002879512.1| hypothetical protein VCD_003786 [Vibrio cholerae MJ-1236]
 gi|254291239|ref|ZP_04962034.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|254850857|ref|ZP_05240207.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255744158|ref|ZP_05418111.1| predicted permease [Vibrio cholera CIRS 101]
 gi|262155732|ref|ZP_06028856.1| predicted permease [Vibrio cholerae INDRE 91/1]
 gi|262169926|ref|ZP_06037616.1| predicted permease [Vibrio cholerae RC27]
 gi|298500741|ref|ZP_07010544.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|121547804|gb|EAX57892.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121629469|gb|EAX61896.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|124122729|gb|EAY41472.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|126510534|gb|EAZ73128.1| lipoprotein, putative [Vibrio cholerae NCTC 8457]
 gi|126519499|gb|EAZ76722.1| lipoprotein, putative [Vibrio cholerae B33]
 gi|146315616|gb|ABQ20155.1| putative lipoprotein [Vibrio cholerae O395]
 gi|149740616|gb|EDM54725.1| lipoprotein, putative [Vibrio cholerae MZO-2]
 gi|150422803|gb|EDN14755.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|227008693|gb|ACP04905.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|227012449|gb|ACP08659.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|229342148|gb|EEO07144.1| hypothetical protein VIF_001439 [Vibrio cholerae TM 11079-80]
 gi|229344266|gb|EEO09241.1| hypothetical protein VCC_003609 [Vibrio cholerae RC9]
 gi|229353785|gb|EEO18721.1| hypothetical protein VCE_000613 [Vibrio cholerae B33]
 gi|229357976|gb|EEO22893.1| hypothetical protein VCF_000964 [Vibrio cholerae BX 330286]
 gi|229371519|gb|ACQ61942.1| hypothetical protein VCD_003786 [Vibrio cholerae MJ-1236]
 gi|254846562|gb|EET24976.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255738098|gb|EET93490.1| predicted permease [Vibrio cholera CIRS 101]
 gi|262021660|gb|EEY40371.1| predicted permease [Vibrio cholerae RC27]
 gi|262030443|gb|EEY49083.1| predicted permease [Vibrio cholerae INDRE 91/1]
 gi|297540522|gb|EFH76580.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 361

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 154/347 (44%), Gaps = 21/347 (6%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           L   + ++ +   ++ A II    +PI+  F  K    +   A ++ V +  + ++PLLF
Sbjct: 23  LACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAAFLSCVVLTVIIVIPLLF 82

Query: 81  LFYYGMLEMKELVSKVVLA--NQHGIPV---PRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +F   +++     S+ + A   Q GI       W+  + G   A+         PQ +  
Sbjct: 83  IFG-AIVQQGSKFSQNLYAWVTQGGIQALFNHPWV--VKGLSLANHYLPFEEISPQQIAQ 139

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
               F  T G + +   A   G     + +    M+  LFF  RD      ++ S   H+
Sbjct: 140 RIGQFATTFGSNLVSISAKILGDA-TSFVMHFFLMLFVLFFLLRD----HDKIISAIRHI 194

Query: 196 FPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            P    +  R+   +  V +S  +G  + AI +G+  G   WLAG P  +  G +    +
Sbjct: 195 LPLSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAGGIGMWLAGFPG-LFWGTMMGFAS 253

Query: 253 MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            IP  G  + +   ++YL + G+   A  L +W    +  +D  LRPFL+ G   +  L 
Sbjct: 254 FIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAVVGSIDNLLRPFLMQGSAGMNTLM 313

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAV---IWKESIMAIKENKEK 355
            FF L+GG++  GL+GL  GP++ A+  V   I++E   +  + +++
Sbjct: 314 IFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQQDR 360


>gi|27365038|ref|NP_760566.1| putative permease [Vibrio vulnificus CMCP6]
 gi|27361184|gb|AAO10093.1| Predicted permease [Vibrio vulnificus CMCP6]
          Length = 361

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 162/353 (45%), Gaps = 51/353 (14%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +   ++ A II    +PI+  F SK  +     ++++ V +  + +VPLLF+F       
Sbjct: 32  YINSIIMAFIISLLMFPIHDWFESKMPKHRNMASLLSCVVLTFIIVVPLLFVF------- 84

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP---QSLKILSETFLKTNGI 146
             +V +  + +Q+     +W++   GG+       + L HP   + LK+++E +L  + I
Sbjct: 85  AAIVQQGSVFSQN---TYQWVTH--GGI------QQVLGHPWIVKGLKLVNE-YLPFDNI 132

Query: 147 DF------IPRFASRFGMIFL-----------DYCLSIIFMIIALFFFYRDGFSISQQLD 189
           D       I + A+ FG   +           ++ +    M+  LFF  RD      ++ 
Sbjct: 133 DAKSIAEKIGQLATSFGSNLVAISAKILGDATNFLMDFFLMLFVLFFLLRD----HDKII 188

Query: 190 SLGEHLFP---AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           S   H+ P   +   K+   +  V +S  +G  + AI +G+  G   WLAG P  +  G 
Sbjct: 189 SAIRHILPLSRSQEDKLLSEIENVSKSAVMGSFLTAIAQGIAGGLGMWLAGFPG-LFWGT 247

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +    + IP  G  + +   +IYL + G+   A  L +W    +  +D  LRPFL+ G  
Sbjct: 248 MMGFASFIPVVGTALIWIPATIYLFLTGDTGWAIFLAIWSIAIVGSIDNLLRPFLMQGSG 307

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV---IWKESIMAIKENKEK 355
            +  L  FF L+GG++  GL+GL  GP++ A+  V   I++E      + ++ 
Sbjct: 308 GMNTLLIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFKGFLDQQDN 360


>gi|328954356|ref|YP_004371690.1| protein of unknown function UPF0118 [Desulfobacca acetoxidans DSM
           11109]
 gi|328454680|gb|AEB10509.1| protein of unknown function UPF0118 [Desulfobacca acetoxidans DSM
           11109]
          Length = 409

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 130/237 (54%), Gaps = 13/237 (5%)

Query: 121 ELWTKHLSHPQSLKILS-ETFLKT---NGIDFIPRFASRFGMI--FLDYCLSIIFMIIAL 174
           E + KHL+ P +L+ L  E  ++T   +   FI  + +  G++  F  +  S++ ++   
Sbjct: 148 EDYAKHLNLPVNLENLKIEEVIRTALISASQFI--YNNSIGLVKGFTTFLFSLLLILFIT 205

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           FF + +G     ++  L   L  A+  +I   V   IR+T  G  I+AI +G++ G  ++
Sbjct: 206 FFCFLEGDDFIDEIKRLSP-LDQAHNDEILGDVENTIRATIRGTVIVAIIQGILGGLGFF 264

Query: 235 LAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
             GVP     G +    ++IP  GA I +   +++L  +G+I+ +  + LWG + +  +D
Sbjct: 265 CFGVPRAAFWGTVMIPASVIPVIGAAIIWLPAALFLFFQGHIWQSLGMVLWGGVFIGSID 324

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA-LIAV--IWKESIM 347
             ++P+L+ G  + P + T F ++GG+   G++G  +GP++++ L++V  I++++I+
Sbjct: 325 NLVKPYLMKGARQTPTIFTLFAIMGGITYFGMIGFILGPLILSFLLSVLEIYRKTIL 381


>gi|85375175|ref|YP_459237.1| hypothetical protein ELI_11740 [Erythrobacter litoralis HTCC2594]
 gi|84788258|gb|ABC64440.1| hypothetical protein ELI_11740 [Erythrobacter litoralis HTCC2594]
          Length = 360

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 149/336 (44%), Gaps = 17/336 (5%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F  P+L + +      P+Y   +      +   A+    +++ +F   LL + + G   +
Sbjct: 34  FVMPILWSALAAILFQPLYQRILGNLNGKANQAAI---ATLLIIFFAVLLPMIWIGSAIV 90

Query: 90  KELVSKVVLANQHG-IPVPRWLSDI----PGGMWASELWTKHLSHPQSLKILSETFLKTN 144
           ++  + VV+A Q G I V   +  I    P  +  + L  +       L+  ++  L T 
Sbjct: 91  RQ-AANVVIAFQEGRIDVATLVGQIFDALPSNL-RNMLDAQGWGDFADLQARTQELL-TQ 147

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               I + A   G   L Y L+    +   +F  RDG  I Q +   G  L     ++++
Sbjct: 148 SAGLIAQQALVIGGGALGYVLAFGVGLYITYFLLRDGKGIGQAVME-GVPLQKDVAERLA 206

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFT 263
                ++R+T  G  ++ I +G +    +W+ G+PS +  G++ A+ +++P  G  I + 
Sbjct: 207 DKFLNIVRATIKGSVVVGIVQGALGALTFWIVGLPSVLLFGLVMAVFSLLPAIGPAIVWV 266

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             +I+L   G I+    + + G   + + D  LRP LVG    +P        +GG+ TM
Sbjct: 267 PAAIWLFATGAIWQGIVVVVSGVAVIGMADNLLRPILVGRDTGIPDWIILVTTLGGIATM 326

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           GL G+ +GP+L  L    W      ++E+ E + +N
Sbjct: 327 GLSGIVLGPMLAGLFLAGWT----ILREHNEAVDAN 358


>gi|229512886|ref|ZP_04402353.1| hypothetical protein VCB_000528 [Vibrio cholerae TMA 21]
 gi|229350135|gb|EEO15088.1| hypothetical protein VCB_000528 [Vibrio cholerae TMA 21]
          Length = 361

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 154/347 (44%), Gaps = 21/347 (6%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           L   + ++ +   ++ A II    +PI+  F  K    +   A ++ V +  + ++PLLF
Sbjct: 23  LACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAAFLSCVVLTVIIVIPLLF 82

Query: 81  LFYYGMLEMKELVSKVVLA--NQHGIPV---PRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +F   +++     S+ + A   Q GI       W+  + G   A+         PQ +  
Sbjct: 83  IFG-AIVQQGSKFSQNLYAWVTQGGIQALFNHPWV--VKGLSLANHYLPFEEISPQQIAQ 139

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
               F  T G + +   A   G     + +    M+  LFF  RD      ++ S   H+
Sbjct: 140 RIGQFATTFGSNLVSISAKILGDA-TSFVMHFFLMLFVLFFLLRD----HDKIISAIRHI 194

Query: 196 FPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            P    +  R+   +  V +S  +G  + AI +G+  G   WLAG P  +  G +    +
Sbjct: 195 LPLSRSQEDRLLSEIESVSKSAVMGSFLTAIAQGVAGGIGMWLAGFPG-LFWGTMMGFAS 253

Query: 253 MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            IP  G  + +   ++YL + G+   A  L +W    +  +D  LRPFL+ G   +  L 
Sbjct: 254 FIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAVVGSIDNLLRPFLMQGSAGMNTLM 313

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAV---IWKESIMAIKENKEK 355
            FF L+GG++  GL+GL  GP++ A+  V   I++E   +  + +++
Sbjct: 314 IFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQQDR 360


>gi|167584523|ref|ZP_02376911.1| hypothetical protein BuboB_04261 [Burkholderia ubonensis Bu]
          Length = 260

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 89/214 (41%), Gaps = 17/214 (7%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKK--EESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+   F S +   E  T +A + T +V  L ++P+    
Sbjct: 56  WVIRAFIPAIAWACVIAIALWPLLKRFESHRLFRERPTVVATVITAAVSLLVVLPVAIAL 115

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLK-----IL 136
              + +  EL   +     +GIPVP  ++ +P G    +  W  HL HP   +     + 
Sbjct: 116 IQAIGQAHELREWLRTVQDNGIPVPDVVARLPVGAPQVAAWWQAHLGHPLHAEAAMKGVN 175

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           SETFL          F   FG       L   FM++ LF   R G  +S  L    +  F
Sbjct: 176 SETFLA---------FGRHFGSKLAHAVLEFGFMLVTLFVILRAGHKLSGALLQGVQRAF 226

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
                ++   +   +  T  G+ ++ +GEG +LG
Sbjct: 227 GGNGAQLIERMAAAVHGTVTGLVVVGLGEGALLG 260


>gi|153829135|ref|ZP_01981802.1| putative lipoprotein [Vibrio cholerae 623-39]
 gi|148875393|gb|EDL73528.1| putative lipoprotein [Vibrio cholerae 623-39]
          Length = 361

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 154/347 (44%), Gaps = 21/347 (6%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           L   + ++ +   ++ A II    +PI+  F  K    +   A ++ V +  + ++PLLF
Sbjct: 23  LACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAAFLSCVVLTVIIVIPLLF 82

Query: 81  LFYYGMLEMKELVSKVVLA--NQHGIPV---PRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +F   +++     S+ + A   Q GI       W+  + G   A+         PQ +  
Sbjct: 83  IFG-AIVQQGSKFSQNLYAWVTQGGIQALFNHPWV--VKGLSLANHYLPFEEISPQQIAQ 139

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
               F  T G + +   A   G     + +    M+  LFF  RD      ++ S   H+
Sbjct: 140 RIGQFATTFGSNLVSISAKILGDA-TSFVMHFFLMLFVLFFLLRD----HDKIISAIRHI 194

Query: 196 FPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            P    +  R+   +  V +S  +G  + AI +G+  G   WLAG P  +  G +    +
Sbjct: 195 LPLSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAGGIGMWLAGFPG-LFWGTMMGFAS 253

Query: 253 MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            IP  G  + +   ++YL + G+   A  L +W    +  +D  LRPFL+ G   +  L 
Sbjct: 254 FIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSIAVVGSIDNLLRPFLMQGSAGMNTLM 313

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAV---IWKESIMAIKENKEK 355
            FF L+GG++  GL+GL  GP++ A+  V   I++E   +  + +++
Sbjct: 314 IFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQQDR 360


>gi|149174467|ref|ZP_01853093.1| hypothetical membrane spanning protein [Planctomyces maris DSM
           8797]
 gi|148846577|gb|EDL60914.1| hypothetical membrane spanning protein [Planctomyces maris DSM
           8797]
          Length = 443

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 154/344 (44%), Gaps = 31/344 (9%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F  P+  A ++   S P+ + FI +      F A + T  ++   ++PL    + G L++
Sbjct: 28  FILPLFLAAVVAMISQPLLNYFIRRTNGHVRFAAGLTTTIIVSAILIPLCVGIFLGSLQL 87

Query: 90  -KELVSKVVLAN-QHGIPVPRWLSDIPGGM------WASELWTKHL-----SHPQSLKIL 136
              +V+ +  AN    +   R   +I          W+ E     +     S       +
Sbjct: 88  FTTIVNTLDEANWNKTVQTIREKVEISNDKFQQFVDWSHEYLQYDIDSLVTSGKSGEPKI 147

Query: 137 SETFLKTNGIDFIPRFASR-----------FGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           SE F++ N    +   A R            G +F    ++ I  IIAL++F  DG+ + 
Sbjct: 148 SEDFIRKNLQATLVPIAKRSLGVAASTVGLLGTLF-SALIAWIMFIIALYYFLADGYLLI 206

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +   SL   +   Y +++     KV+R+  +   + AIG+GL    A  + G    +   
Sbjct: 207 ESTQSLIP-VHVDYQRRLIDQFQKVVRAVVIATFLAAIGQGLTTAIALSIVGFDHFIVFL 265

Query: 246 VITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           ++  I +M+P  G+ + +   +I+L+ +G+  +A  L L G + +  +D  +R +++   
Sbjct: 266 ILATITSMVPLLGSWLIWLPCAIWLMYQGDWGSAIFLILIGTLVVGTMDNIIRTYVLQSD 325

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPV----LMALIAVIWKE 344
            KL  L  F  ++GG++ MGL G+FIGP+    L ALI +   E
Sbjct: 326 AKLHPLLAFVSVLGGLQVMGLWGVFIGPIVASCLHALIQIFNTE 369


>gi|91782652|ref|YP_557858.1| hypothetical protein Bxe_A3174 [Burkholderia xenovorans LB400]
 gi|91686606|gb|ABE29806.1| Putative membrane protein [Burkholderia xenovorans LB400]
          Length = 371

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 159/339 (46%), Gaps = 11/339 (3%)

Query: 5   MLNPQGIMRWMIMF--IILV--SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M + Q I R   +F  IILV  SL  L  F   +L   I+ ++SW +Y    +       
Sbjct: 1   MKSDQLIERLAAVFALIILVGGSLLVLAPFTTALLWGAILSYSSWGLYRRLTAALGGRRK 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWA 119
           + A +  + ++ + + P ++  +     + ++V+ V    + G+P +P W++ IP    +
Sbjct: 61  WAATLIVLIILIVVLGPFVYAGFAFGARVHDIVALVQRLFEAGLPDLPPWVARIPLVGSS 120

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL-FFFY 178
            E + + L+   S  I     L      +I   A     I + + L ++ + I L FFFY
Sbjct: 121 IEAFWERLTSSNSELIAQLRTLAAPAGKWILAAA-----IAVTHGLGLLALSIVLAFFFY 175

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
             G   +  L++    +       +  +    ++    G+   A+ +G++ G   W+AGV
Sbjct: 176 TGGEGAAAWLNAGMRRVAGERADYLLALAGSTVKGVVYGILGTALVQGILAGFGCWIAGV 235

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P+   LG+ T  +++IPGG  + +   +I+L   G    A  L +WG + + + D  ++P
Sbjct: 236 PAPALLGLATFFLSVIPGGPVVVWLPAAIWLYHGGATGWAIFLVVWGVLVVGMSDNVIKP 295

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
            L+G    +P +    G++GG    G LG+FIGP L+A+
Sbjct: 296 ILIGKNSDMPLILVMLGILGGAFAFGFLGVFIGPTLLAV 334


>gi|307826374|ref|ZP_07656577.1| protein of unknown function UPF0118 [Methylobacter tundripaludum
           SV96]
 gi|307732582|gb|EFO03456.1| protein of unknown function UPF0118 [Methylobacter tundripaludum
           SV96]
          Length = 350

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/345 (20%), Positives = 145/345 (42%), Gaps = 35/345 (10%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF---- 82
           +K F      A+I+     P+Y       + S      +  + ++ +F++PLL +     
Sbjct: 25  IKDFLLACFWAIILAVVFDPVYQRIRQYFKNSEILPLFLTMMMIILVFVIPLLTIILMIT 84

Query: 83  -----YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI-- 135
                YY  +   E+  +V   +   + +P++                 LSH Q++ +  
Sbjct: 85  EESTGYYQKIASGEINPQVYFQDILALVLPKF---------------YKLSHIQAISVEQ 129

Query: 136 --LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL-- 191
              S     T  + +I +         L+  + +      LFF  RDG  + ++L SL  
Sbjct: 130 ISASAGNAFTQAVKYIAQQLPALTQNLLNLIVQVALAFYILFFLLRDGQQLIRKLISLIP 189

Query: 192 -GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
            G+ +    +++ +     V R+T  G  I+A+ +G + G  +W  G+P+    G++  +
Sbjct: 190 IGDGIEIELFERFT----SVARATVKGGLIVAVIQGSIGGFLFWFVGIPAAFLWGILMIV 245

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           ++++P G+ + +   +I L ++G    A  +   G + + ++D  LRP L+G   K+   
Sbjct: 246 LSLLPIGSTLIWVPAAIILFLQGQTLKAAIVLAIGILVIGMIDNFLRPRLIGKDSKMSDY 305

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                 +GG+    L G  +GP++ AL    W       + +K K
Sbjct: 306 LVLVSTLGGLTWFSLTGFVLGPIIAALFITCWDLMGQESQASKRK 350


>gi|254226734|ref|ZP_04920310.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|125620751|gb|EAZ49109.1| conserved hypothetical protein [Vibrio cholerae V51]
          Length = 361

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 154/347 (44%), Gaps = 21/347 (6%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           L   + ++ +   ++ A II    +PI+  F  K    +   A ++ V +  + ++PLLF
Sbjct: 23  LACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAAFLSCVVLTVIIVIPLLF 82

Query: 81  LFYYGMLEMKELVSKVVLA--NQHGIPV---PRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +F   +++     S+ + A   Q GI       W+  + G   A+         PQ +  
Sbjct: 83  IFG-AIVQQGSKFSQNLYAWVTQGGIQALFNHPWV--VKGLSLANHYLPFEEISPQQIAQ 139

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
               F  T G + +   A   G     + +    M+  LFF  RD      ++ S   H+
Sbjct: 140 RIGQFATTFGSNLVSISAKILGDA-TSFVMHFFLMLFVLFFLLRD----HDKIISAIRHI 194

Query: 196 FPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            P    +  R+   +  V +S  +G  + AI +G+  G   WLAG P  +  G +    +
Sbjct: 195 LPLSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAGGIGIWLAGFPG-LFWGTMMGFAS 253

Query: 253 MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            IP  G  + +   ++YL + G+   A  L +W    +  +D  LRPFL+ G   +  L 
Sbjct: 254 FIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSIAVVGSIDNLLRPFLMQGSAGMNTLM 313

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAV---IWKESIMAIKENKEK 355
            FF L+GG++  GL+GL  GP++ A+  V   I++E   +  + +++
Sbjct: 314 IFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQQDR 360


>gi|153217441|ref|ZP_01951183.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|124113554|gb|EAY32374.1| conserved hypothetical protein [Vibrio cholerae 1587]
          Length = 361

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 153/347 (44%), Gaps = 21/347 (6%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           L   + ++ +   ++ A II    +PI+  F  K    +   A ++ V +  + ++PLLF
Sbjct: 23  LACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAAFLSCVVLTVIIVIPLLF 82

Query: 81  LFYYGMLEMKELVSKVVLA--NQHGIPV---PRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +F   +++     S+ + A   Q GI       W+  + G   A+         PQ +  
Sbjct: 83  IFG-AIVQQGSKFSQNLYAWVTQGGIQTLFNHPWV--VKGLSLANHYLPFEEISPQQIAQ 139

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
               F  T G + +   A   G     + +    M+  LFF  RD      ++ S   H+
Sbjct: 140 RIGQFATTFGSNLVSISAKILGDA-TSFVMHFFLMLFVLFFLLRD----HDKIISAIRHI 194

Query: 196 FPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            P    +  R+   +  V +S  +G  + AI +G+  G   WLAG P  +  G +    +
Sbjct: 195 LPLSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAGGIGMWLAGFPG-LFWGTMMGFAS 253

Query: 253 MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            IP  G  + +   ++YL + G+   A  L +W    +  +D  LRPFL+ G   +  L 
Sbjct: 254 FIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAVVGSIDNLLRPFLMQGSAGMNTLM 313

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAV---IWKESIMAIKENKEK 355
            FF L+GG++  GL+GL  GP++ A+  V   I++E      + +++
Sbjct: 314 IFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRNFLDQQDR 360


>gi|108757825|ref|YP_632271.1| hypothetical protein MXAN_4093 [Myxococcus xanthus DK 1622]
 gi|108461705|gb|ABF86890.1| putative membrane protein [Myxococcus xanthus DK 1622]
          Length = 385

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 150/325 (46%), Gaps = 28/325 (8%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV--SKVVLANQHG 103
           P+  S   K     +  A ++TV+V  L + PL  + +    E+ + V  ++V+L  QH 
Sbjct: 46  PVQDSLCQKLGGRKSLSAGVSTVTVFVLILAPLALVGWMVAREVFQFVGQAQVLLEQQH- 104

Query: 104 IPVPRWLSDIPGGMWASELWTK-HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD 162
           +  P +L+ +P G+   E + +  +   ++ + L      T G   +   A+       D
Sbjct: 105 LRHP-FLASLPLGL---ERYLRLGVDSAETERALLAAM--TGGASLLRDVAA----AGTD 154

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQ---LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
             +++  M +A+++F+ DG  +  +   L  L    F A+ ++ + +   +I     G T
Sbjct: 155 LVINLFLMSVAMYYFFLDGRRLVAEVMRLIPLDRRYFEAFAREFTDVAYAII----YGNT 210

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNA 278
           + A+ +G V      +AGVP     G    ++A++P GG  + +  + + L+    +   
Sbjct: 211 VTALIQGAVGFVGLLIAGVPHAGVWGAAMVLVALVPVGGTALVWGPIGVVLIAANQVSEG 270

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP----VL 334
             L  WGA  +  +D  +RP L G  + L  L  F  + GG+   G++GL +GP    + 
Sbjct: 271 VFLLAWGAFLVGSIDNVIRPRLCGSRMALHPLLVFLSMFGGLAVFGMMGLLVGPLIASIF 330

Query: 335 MALIAVIWKESIMAIKENKEKISSN 359
           MA++  I++   + I    E +S++
Sbjct: 331 MAMVR-IYRRDFLGIGR-AEHLSAH 353


>gi|187927640|ref|YP_001898127.1| hypothetical protein Rpic_0540 [Ralstonia pickettii 12J]
 gi|187724530|gb|ACD25695.1| protein of unknown function UPF0118 [Ralstonia pickettii 12J]
          Length = 349

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 159/350 (45%), Gaps = 22/350 (6%)

Query: 14  WMIMFIILVSL-YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           ++++F + + L + L  FF  V   +I+     P+  + +++  +     A++    ++ 
Sbjct: 12  YLLLFAVTLGLCWILSPFFGAVFWGVILAILFQPVQRALVARMGKRRNLAALVTLALIIL 71

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           + I+P++F+    + E+     ++  A  +     R+LS+    + A   W + L     
Sbjct: 72  IVILPVIFVAATIVQEIGVAYQEIQSAQPN---YSRYLSE---AVHALPTWVQQLLAKAG 125

Query: 133 LKILSETFLK-TNGIDFIPRFAS----RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           L  ++    K  +G   I +FA+      G     + +    M+  +FF  RDG  I ++
Sbjct: 126 LTNIAGIQKKLADGAAQISQFAATKALSIGQNTFQFVVGFGVMLYMVFFLLRDGTEIGRR 185

Query: 188 LDSLGEHLFPAYWKKISRIVPK---VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           +        P   +    ++ K   V+R+T  G   +A+ +G + G  +W+ G+   V  
Sbjct: 186 V----RRALPMDEEHKRLLLSKFTTVVRATVKGNIAVALVQGALGGLIFWILGIDGVVLW 241

Query: 245 GVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           G + A ++++P  GA + +  V++Y L+ G I+    L  +    + +VD  LRP LVG 
Sbjct: 242 GALMAFLSLLPAIGASLVWIPVAVYFLMVGAIWKCVILVAFCGGVIGLVDNLLRPLLVGK 301

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             K+P        +GG+   G+ G  IGP++ AL    W   I A  +N+
Sbjct: 302 DTKMPDWVVLISTLGGMELFGITGFVIGPLVAALFMASW--DIFARGQNE 349


>gi|192360560|ref|YP_001981648.1| hypothetical protein CJA_1152 [Cellvibrio japonicus Ueda107]
 gi|190686725|gb|ACE84403.1| putative membrane protein [Cellvibrio japonicus Ueda107]
          Length = 387

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 155/357 (43%), Gaps = 40/357 (11%)

Query: 6   LNPQGIMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +N +   R  ++F++ VS+ F   L+ FF  +  A  I    +P++   +      +   
Sbjct: 1   MNKKLETRTFLLFLLAVSIAFILVLRPFFGTIFWACAITIIFYPLHLRLVELTRGRTNTS 60

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A++  V+ + + ++P +FL    + E      K+    Q G        +I    +  +L
Sbjct: 61  ALLTLVACILIVVLPAIFLISSVVREGAVFYGKL----QSG--------EINPAQYIEQL 108

Query: 123 WTKHLSHPQSLKILSETF--LKTNGIDF-------IPRFASRFGMIFLDYCLSIIFMIIA 173
            T   +  Q+L+ L      LK N +D        I +     G       L+I  M+  
Sbjct: 109 RTAFPAVQQALEHLEIDIDNLKKNALDLGMSSGKLIAQHLLNAGQNTFILLLNICLMLYL 168

Query: 174 LFFFYRDGFSISQQL-------DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
            FF  RDG  + + L       D+    LF  + +        V R+T  G  +IA+ +G
Sbjct: 169 TFFLLRDGPQLLELLIRALPLGDARERLLFAKFGE--------VTRATIKGNLVIAVIQG 220

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWG 285
            + G  +W+ G+P  +  GV+ AI+++IP   P + +  V+IYL   G+      L  +G
Sbjct: 221 SLGGLIFWVLGIPGALLWGVVMAILSLIPAVGPALIWLPVAIYLFATGDFTKGAILVAFG 280

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              + ++D  LRP LVG   KLP        +GG+   G+ G  IGP++ AL    W
Sbjct: 281 GGVIGLIDNILRPILVGRDTKLPDYIVLLSTLGGLGLFGVNGFIIGPLVAALFMAFW 337


>gi|188996846|ref|YP_001931097.1| protein of unknown function UPF0118 [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931913|gb|ACD66543.1| protein of unknown function UPF0118 [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 355

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 143/316 (45%), Gaps = 44/316 (13%)

Query: 45  WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
           +PI+   ISK  ++S   ++I+T  ++   ++P   + ++   E+ EL   +     +  
Sbjct: 46  YPIHQK-ISKIVKNSVLNSLISTFIILTTLLLPFSLILFFLTKEIIELYPLIADYITNPN 104

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK---TNGIDFIPRFASRFGMIFL 161
            +   L + P   +  +L+ K          L E +L    +N  D I  +  +F  +  
Sbjct: 105 LIVEKLKESP---YLYKLYLK----------LQEFYLNKLDSNFHDSIINYLKQFTAVMF 151

Query: 162 DYCLSIIFMII-----------ALFFFYRDGFSISQQLDSL-------GEHLFPAYWKKI 203
           ++  + +  +I            +FF ++DG+ +   + S+        ++LF   +  +
Sbjct: 152 NFAKTFLSNVILIFIAIFIMAITIFFLFKDGYKLYNLVYSIIPLEKEEKDYLFSNSYAAV 211

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISF 262
             ++        LG   +AI + +     + +A V   + L  +T   A IP GGA + +
Sbjct: 212 QAVI--------LGSVFVAIAQAIASLIGFLVADVEYSLVLTFLTFFAAFIPFGGASLVW 263

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             V+IYL++   +       ++G   +  VD  +RP +VG  I +  +  FF ++GG+ T
Sbjct: 264 VPVAIYLMVSKGLLVGILFAVYGTFVISTVDNIIRPIVVGTKIDMHPMIMFFAIIGGLST 323

Query: 323 MGLLGLFIGPVLMALI 338
            G LG+FI PV++ALI
Sbjct: 324 FGFLGIFIAPVIVALI 339


>gi|227819963|ref|YP_002823934.1| hypothetical protein NGR_b17300 [Sinorhizobium fredii NGR234]
 gi|227338962|gb|ACP23181.1| hypothetical protein NGR_b17300 [Sinorhizobium fredii NGR234]
          Length = 365

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 95/191 (49%), Gaps = 12/191 (6%)

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
           +F      R  +  +D  L+  F    LF+F RDG    + L+ L ++ FP    ++ R+
Sbjct: 156 NFSASLVRRSVVQIIDVVLTFYF----LFYFLRDG---REALNVLKDY-FPLRSSEMDRL 207

Query: 207 ---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISF 262
              V + + +   G   +AI +G + G  +WL G+PS +  G+   ++AM+P  GA I +
Sbjct: 208 FFRVSETVHAIVFGTFAVAIVQGTLGGLMFWLLGLPSPLLWGLAMGLLAMVPVLGAFIIW 267

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ L + G    A  L  WGA  +  VD  L P  VG  +KL  + TF  ++GGV  
Sbjct: 268 IPAALSLALTGEWGKALILTAWGAGVVATVDNLLYPIFVGDRLKLHTVVTFMSMIGGVIV 327

Query: 323 MGLLGLFIGPV 333
            G  GL IGPV
Sbjct: 328 FGPAGLVIGPV 338


>gi|156935110|ref|YP_001439026.1| hypothetical protein ESA_02961 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533364|gb|ABU78190.1| hypothetical protein ESA_02961 [Cronobacter sakazakii ATCC BAA-894]
          Length = 362

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 161/357 (45%), Gaps = 35/357 (9%)

Query: 6   LNPQGIMR-WMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +N + + R + I+ + +VS+ F   +K + + VL A+I+    +PI           +  
Sbjct: 1   MNSKEMSRAFFILILFIVSILFFNLVKPYLSAVLWAVILAVIFYPIKRRLCHMMNGRNN- 59

Query: 62  LAVIATVSVMCLFI-VPLLFLFYYGMLEMKELVSKVVLANQHGIP-----VPRWLSDIPG 115
           +A + TV ++CL + VPL  +    + E   + S V  AN   +P     V R L D   
Sbjct: 60  IASLLTVVLICLLVFVPLAVVASSLVSEFNAVYSDV-QANNTTLPTLLADVVRILPD--- 115

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF--GMIFL--DYCLSIIF-- 169
                  W + +     L   +    K +G+       S++  G IFL      S++   
Sbjct: 116 -------WAQRMLAENQLDNAAAIQQKISGVALK---GSQYVAGSIFLISRNTFSVVIGF 165

Query: 170 --MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
             M+  LFF  +DG  +   + S    L     +++ R    V R+T  G  ++A+ +G+
Sbjct: 166 GIMLYLLFFLLKDGSRLVSVVLS-AVPLSDKVKQRLFRRFAAVARATVKGTVVVAVVQGI 224

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           + G A++ AG+ + +  G + A ++++P  GA + +    IYL   G I  A  L  +  
Sbjct: 225 LGGVAFYFAGIGASILWGSLMAFLSLVPAVGAALIWVPAVIYLFTTGAIIKAVLLTAFFV 284

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           + + + D  LRP LVG  I++P        +GG+   G+ G  +GP++ AL    W 
Sbjct: 285 VVVGLADNLLRPLLVGKDIRMPDWLILLSTLGGLEVYGINGFVVGPLIAALFVTCWN 341


>gi|36958669|gb|AAQ87137.1| Hypothetical protein RNGR00112 [Sinorhizobium fredii NGR234]
          Length = 355

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 95/191 (49%), Gaps = 12/191 (6%)

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
           +F      R  +  +D  L+  F    LF+F RDG    + L+ L ++ FP    ++ R+
Sbjct: 146 NFSASLVRRSVVQIIDVVLTFYF----LFYFLRDG---REALNVLKDY-FPLRSSEMDRL 197

Query: 207 ---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISF 262
              V + + +   G   +AI +G + G  +WL G+PS +  G+   ++AM+P  GA I +
Sbjct: 198 FFRVSETVHAIVFGTFAVAIVQGTLGGLMFWLLGLPSPLLWGLAMGLLAMVPVLGAFIIW 257

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ L + G    A  L  WGA  +  VD  L P  VG  +KL  + TF  ++GGV  
Sbjct: 258 IPAALSLALTGEWGKALILTAWGAGVVATVDNLLYPIFVGDRLKLHTVVTFMSMIGGVIV 317

Query: 323 MGLLGLFIGPV 333
            G  GL IGPV
Sbjct: 318 FGPAGLVIGPV 328


>gi|54302864|ref|YP_132857.1| hipothetical membrane protein [Photobacterium profundum SS9]
 gi|46916288|emb|CAG23057.1| hipothetical membrane protein [Photobacterium profundum SS9]
          Length = 365

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 167/364 (45%), Gaps = 34/364 (9%)

Query: 9   QGIMRWMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFIS----KKEESSTFLA 63
           +  +R  ++FI+L   Y  +K F  PVL   II     P+     +    K+  S+T +A
Sbjct: 21  ESAIRVGLLFILLAWSYGIVKPFLIPVLWGAIIAVALMPLTVKLENMLKGKRGLSATVIA 80

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP-RWLSDIPG-GMWASE 121
            I     + + IVP + +F   M+E  E ++  + +    IP P   +++IP  G    +
Sbjct: 81  FIG----ILILIVPFV-MFSISMVESVEGITSTISSGTLKIPGPTERIANIPIIGQQIFD 135

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGM---IFLDYCLSIIFMIIALFF-- 176
           +W    ++      L + F K     F+P+  S   M   +  +  +SI+  +I+L    
Sbjct: 136 VWQLFSTN------LEKAFTK-----FLPQLTSGLAMMASVIGNSIVSILMFVISLLISA 184

Query: 177 -FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
            F  +  SIS+ +++L   +  A+ ++ + +    IRS  LG+  +A  +  ++G   + 
Sbjct: 185 AFMANATSISKSVNTLSVRIAGAHGEEWATLCTATIRSVLLGVVGVACIQAFLVGIGVFA 244

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
            G+P+   + ++  ++A+    A +    V  Y+    +   AT   +W  +   + D  
Sbjct: 245 IGLPTAGLITILVLVLAIAQLPALLVVAPVIAYVYSIHDSTTATIFAVWTLLA-GLSDNF 303

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L+P L+G  + +P      G +GG+ + G+LGLFIGPV++A    IW +         EK
Sbjct: 304 LKPLLMGRGLDIPMPVILLGAIGGMVSSGILGLFIGPVILA----IWYQLFNEWMHESEK 359

Query: 356 ISSN 359
             S 
Sbjct: 360 ADSQ 363


>gi|226943233|ref|YP_002798306.1| hypothetical protein Avin_11000 [Azotobacter vinelandii DJ]
 gi|226718160|gb|ACO77331.1| conserved hypothetical protein [Azotobacter vinelandii DJ]
          Length = 346

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 93/203 (45%), Gaps = 8/203 (3%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
            G   +   A   G     + L    M+  LFFF RDG ++  ++        P    K 
Sbjct: 142 QGSQLLATKAFNIGQNTFQFILGFFVMLYLLFFFLRDGTALVARI----REAIPLSEMKK 197

Query: 204 SRIVPKV---IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           SR+  ++   +++T  G  ++A+ +G + G  + L G+P  +  GV  A ++ +P  G  
Sbjct: 198 SRLFQRITGMVQATIKGSLVVAVIQGSLGGVIFALLGIPRALLWGVAMAFLSFLPALGTG 257

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +  V+IY L+ G I  +  L   G   + +VD  +RP LV    +LP        +GG
Sbjct: 258 LVWAPVAIYFLLSGAILKSVLLTACGIFIIGLVDNIVRPILVSKDTRLPDYLVLVSTLGG 317

Query: 320 VRTMGLLGLFIGPVLMALIAVIW 342
           +   GL G  IGPV+ AL    W
Sbjct: 318 LALFGLNGFVIGPVIAALFVSTW 340


>gi|150376865|ref|YP_001313461.1| hypothetical protein Smed_4731 [Sinorhizobium medicae WSM419]
 gi|150031412|gb|ABR63528.1| protein of unknown function UPF0118 [Sinorhizobium medicae WSM419]
          Length = 359

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 96/191 (50%), Gaps = 15/191 (7%)

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV---IRSTFLG 217
           +D  L+  F    LF+F RDG    Q L +L EH  P   + ++R+  +V   + +   G
Sbjct: 170 IDAVLTFYF----LFYFMRDG---RQVLAALKEH-SPLSEQDMNRLFTRVHETVHAVVFG 221

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIF 276
              +A  +G + G  +WL G+P+ V  G+   ++A++P  GA I +   ++ L + G   
Sbjct: 222 TVAVAAVQGAMGGLMFWLLGLPAPVVWGLAMGLLAVVPVLGAFIVWLPAALSLALSGEWG 281

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV--- 333
            A  L  WGA  +  +D  L P  VG  +KL  L  F  ++GG+   G  GL IGPV   
Sbjct: 282 KALILAGWGAGVVATIDNLLYPIFVGDRLKLHTLTAFMSMIGGIIVFGSAGLVIGPVAFT 341

Query: 334 LMALIAVIWKE 344
           +  L+  IW++
Sbjct: 342 VTLLLLDIWRQ 352


>gi|319945201|ref|ZP_08019463.1| permease [Lautropia mirabilis ATCC 51599]
 gi|319741771|gb|EFV94196.1| permease [Lautropia mirabilis ATCC 51599]
          Length = 433

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 160/352 (45%), Gaps = 24/352 (6%)

Query: 18  FIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           F+ LVSL FL     F++ ++ A+I+     P+  + + +  + +     I   +V+ + 
Sbjct: 14  FLALVSLAFLAILLPFYSALMWAVILAMLFAPMQRALMRRMPQRANTATFITLGAVIMMV 73

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           I+P++ L    + +  ++ S++   + + G  + + +  +PG       W   +   Q L
Sbjct: 74  IIPVIGLTMSLVNQGAQIYSRIRSGDLNFGAYLAKIIEAMPG-------WLHRMLDAQGL 126

Query: 134 KILS--ETFLKTNGID---FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             L   +  L  +G +   F+   A   G   +D   S   ++  LFF  RDG     QL
Sbjct: 127 LDLPSIQRRLADSGSEIGQFLASQAVNIGQNTVDALASTGVLLYVLFFLLRDG----GQL 182

Query: 189 DSLGEHLFPAYWKKISRIVPK---VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            ++     P   +  + ++ K   V+++T  G   +AI +G++ G   W  G+   +   
Sbjct: 183 VAMFYRAIPLEDEPKNHLLGKFSAVVKATVKGNVAVAIVQGVLGGIILWALGIKGVILWS 242

Query: 246 VITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           V+ A ++++P  G+ + +  +++Y L  G  +    L  +G   + +VD  LRP LVG  
Sbjct: 243 VVMAFLSLLPAVGSGLIWGPIALYFLATGATWQGVVLLAYGVGVIGMVDNVLRPVLVGKN 302

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            K+P        +GG+   GL G  IGP++ AL    W   +   ++  E++
Sbjct: 303 TKMPDYVVLVSTIGGMSLFGLNGFVIGPLIAALFMAAWDLYVAPDRDRDEEV 354


>gi|258625580|ref|ZP_05720466.1| putative lipoprotein [Vibrio mimicus VM603]
 gi|258582133|gb|EEW06996.1| putative lipoprotein [Vibrio mimicus VM603]
          Length = 361

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 148/345 (42%), Gaps = 17/345 (4%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           L   + ++ +   ++ A II    +PI+  F  K      F A ++ V +  + ++PLLF
Sbjct: 23  LACYWLVEPYINSIVMAFIISLLMFPIHEWFEKKLPSHDNFAAFLSCVVLTVIIVIPLLF 82

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSD---IPGGMWASELWTKHLSHPQSLKILS 137
           +F   + +  +    +     HG  +    S    + G   A+         PQ +    
Sbjct: 83  IFGAIVQQGSKFSQNLYAWVTHG-GIQELFSHPWIVKGLSLANHYLPFEEISPQQIAQRI 141

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
             F  T G + +   A   G     + ++   M+  LFF  RD      ++ S   H+ P
Sbjct: 142 GQFATTFGSNLVSISAKILGDA-TSFVMNFFLMLFVLFFLLRD----HDKIISAIRHILP 196

Query: 198 AYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
               +  R+   +  V +S  +G  + AI +GL  G   WLAG P  +  G +    + I
Sbjct: 197 LSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGLAGGIGMWLAGFPG-LFWGTMMGFASFI 255

Query: 255 PG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P  G  + +   ++YL + G    A  L +W    +  +   LRPFL+ G   +  L  F
Sbjct: 256 PVVGTALIWIPATLYLFLTGETTWAIFLAIWSIAVVGSIYNLLRPFLMQGSAGMNTLMIF 315

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAV---IWKESIMAIKENKEK 355
           F L+GG++  GL+GL  GP++ A+  V   I++E      + ++K
Sbjct: 316 FSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRGFLDQQDK 360


>gi|323525474|ref|YP_004227627.1| hypothetical protein BC1001_1122 [Burkholderia sp. CCGE1001]
 gi|323382476|gb|ADX54567.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1001]
          Length = 372

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 149/337 (44%), Gaps = 35/337 (10%)

Query: 18  FIILV--SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
            IILV  SL  L  F   +L   I+ ++SW  Y    +       + A +  + ++ + +
Sbjct: 17  LIILVGGSLLVLAPFTTALLWGAILSYSSWGFYRRLTAAVGGRRKWAATLIVLIILIVVL 76

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP------GGMWA------SEL 122
            P ++  +     + ++V+ V    + G+P +P W++ IP         W       SEL
Sbjct: 77  GPFVYAGFAFGAHVHDIVALVQRLFEAGLPDLPPWVARIPVVGSSIESFWETLTSSNSEL 136

Query: 123 WT--KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
               + L+ P    ILS     T+G+  +               LSI+      FFFY  
Sbjct: 137 IAQLRTLAAPAGKWILSAAIAVTHGLGLL--------------ALSIVLA----FFFYTG 178

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G      L++    +       +  +    ++    G+   A+ +G++ G   W+AGVP+
Sbjct: 179 GEGAGAWLNAGMRRIAGERADYLLALAGSTVKGVVYGILGTALVQGILAGFGCWIAGVPA 238

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              LG+ T  +++IPGG  I +   +I+L   G    A  L +WG + + + D  ++P L
Sbjct: 239 PALLGLATFFLSVIPGGPVIVWLPAAIWLYHGGATGWAIFLVVWGVLVVGMSDNVIKPIL 298

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           +G    +P +    G++GG    G LG+FIGP L+A+
Sbjct: 299 IGKNSDMPLILVMLGILGGAFAFGFLGVFIGPTLLAV 335


>gi|146313035|ref|YP_001178109.1| hypothetical protein Ent638_3398 [Enterobacter sp. 638]
 gi|145319911|gb|ABP62058.1| protein of unknown function UPF0118 [Enterobacter sp. 638]
          Length = 360

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 160/348 (45%), Gaps = 30/348 (8%)

Query: 8   PQGIMRWMIMFIILVS-LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           PQ +   +I+  +L S ++ L  F   ++ A +I   +WP+Y++   K          + 
Sbjct: 11  PQTLFGILIILTLLSSAIWILHPFLLSIVWAGLIVIATWPLYTTVQRKLGGRRKLAITVM 70

Query: 67  TVSVMCLFIVPLLFLFYYGMLEM--KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            V +  +F++P++F    GML    ++L+  ++  ++  +P   +L+ IP       +  
Sbjct: 71  MVFLTAIFLLPIIF--SAGMLSTLFEDLLQWLMHLDKSHLPSLDFLAHIP-------IVG 121

Query: 125 KHLSHPQSLKILSET------FLK---TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
           +HL H + L ++ E        LK   T  I  + +  S+FG +F++     + M++A  
Sbjct: 122 EHL-HRKWLALIHENAESIFDTLKPWITKVIVILAQGLSQFGALFVNG----LMMLLACL 176

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
            FY  G +I++ L      +  A       +    I++  +G+ + A+ + +  G    +
Sbjct: 177 AFYLYGTTITRGLRQFAFRIAGARGDNAVLLAGTTIQAVAMGVVLTAVIQSIFAGVGLAV 236

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
             +PS   L  I  ++ ++  G  I      I+L  +G  +N   L +W  I    +D  
Sbjct: 237 CHIPSSALLTGIIFVLCLMQLGPVIIMLPALIWLFYQGEHWNGAVLLVWTVIA-GSLDNI 295

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L+P L+        L    G++GG+ T G++GL IGPVL+   AV WK
Sbjct: 296 LKPILIKRGADTSLLLIMTGVIGGMLTWGMIGLMIGPVLL---AVSWK 340


>gi|124515995|gb|EAY57504.1| conserved hypothetical protein [Leptospirillum rubarum]
          Length = 361

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 157/343 (45%), Gaps = 25/343 (7%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSAL----IIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           M +F+ L  L +L    AP LSAL    I+ F   PI++ F+ +K     + A++ T   
Sbjct: 23  MALFLCLFGLLYL--IIAPYLSALLWAAILSFAVTPIHA-FLLRKIGRPAWTALLTTFLF 79

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKV-----VLANQHGIPVPRWLSDIP-GGMWASELWT 124
           +   + PLL L   G+    EL+  V      L + H   VP W++ +P  G     L T
Sbjct: 80  LGFVLAPLLSL---GVPLSHELILAVNGIRTFLEDPHS-KVPDWIARLPLVGSRIDALLT 135

Query: 125 KHLSHPQSLKILSETFLKTNGI---DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              +HP  L + +   L+T+ +   D +   A+  G     + L     ++A F F   G
Sbjct: 136 GLKTHPIGLDVATAK-LQTHILAFGDQVLSLATNLG----KWFLKFFIFLLAFFAFTLHG 190

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            +I   L  L         +   +++P   R    G+   A+ + ++    +W AG+P+ 
Sbjct: 191 ETIWATLSRLFTQWAGNRMEIPLKVIPATTRGVLYGVFFTALFQAILSAIGFWAAGLPNV 250

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           + L  I  + A+ P GA + +    +YL +  +   A    LW  +   I++  ++P  +
Sbjct: 251 LLLTTIAFLAALFPIGAVVVWVPSLLYLAVMHHWIAALIFGLWNLLGGGIIEHFIKPMFI 310

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           G    +PFL    G++GG+   GL+GLFIGPV++++   + K 
Sbjct: 311 GRSSDIPFLAILLGVMGGLEAFGLIGLFIGPVVLSVTLALLKA 353


>gi|194335494|ref|YP_002017288.1| protein of unknown function UPF0118 [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194307971|gb|ACF42671.1| protein of unknown function UPF0118 [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 363

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 8/185 (4%)

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPK---VIRSTFLGMTIIAIGEGLVLGSAYWL 235
           RDG    +QL +      P      +R++ K   V R+T  G  ++   +G + G A   
Sbjct: 174 RDG----KQLLAHFLSYLPLRQTDQNRLLDKFISVTRATIKGTMVVGAVQGSLAGLALHF 229

Query: 236 AGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           AG+ S +  G I ++ +++P  G+ + +    IYL   G    A  + L+ +I +  +D 
Sbjct: 230 AGIDSALFWGTIMSLFSILPVLGSALVWVPAVIYLAATGQYPQAIGVLLFCSIVVGQIDN 289

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            LRP L+G   ++P L  FFG +GG+   G+ G  +GP++ AL   IW+      KE   
Sbjct: 290 ILRPMLIGRDTQMPELLIFFGTLGGISLFGVFGFILGPIVAALFMTIWEMYGETFKEYLS 349

Query: 355 KISSN 359
           +I S+
Sbjct: 350 EIKSD 354


>gi|224824021|ref|ZP_03697129.1| protein of unknown function UPF0118 [Lutiella nitroferrum 2002]
 gi|224603440|gb|EEG09615.1| protein of unknown function UPF0118 [Lutiella nitroferrum 2002]
          Length = 350

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 3/166 (1%)

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           RDG  +  +   L   + P    K+ ++V    R+   G  + AI +G ++G  + +AG+
Sbjct: 177 RDGRQLLNRAVRL-VPMQPQRRSKLLKLVGNTTRAVVYGTGLTAIAQGALVGIGFAIAGL 235

Query: 239 PSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           PS V  GV+ AI+A++P GG  + +      L+       A  + +WGA  + + D  LR
Sbjct: 236 PSAVVFGVLAAILALLPIGGTALVWVPAVGTLVATSQWGWAIFMLIWGA-GVTVSDNLLR 294

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           P L+     +  L  F G++GG+   G++G+ IGPVL+ +IA + +
Sbjct: 295 PLLISSQEPVSILVVFVGVIGGLSAFGMIGVIIGPVLLTVIAALLR 340


>gi|239833729|ref|ZP_04682057.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301]
 gi|239821792|gb|EEQ93361.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301]
          Length = 375

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 142/319 (44%), Gaps = 11/319 (3%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +++ VL A+I+     P+               A+++ +  +CL I+P+L +F   + E 
Sbjct: 46  YYSAVLWAVILAVVFSPVQQRLERLLGGRKNIAALLSVLMCICLVIIPMLAIFGSLVQEG 105

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWAS-ELWTKHL---SHPQSLKILSETFLKTNG 145
             L  ++   +     +  ++S I G +  S E W          +    +S   ++ + 
Sbjct: 106 NSLYQRL---SSREFDLNSYISRILGALPDSLEEWLTRFELGDFAEWRSRISSAIMQGSQ 162

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           + F  R  S FG   L + +    M+  LFF +RDG  + +++      L   Y ++   
Sbjct: 163 L-FAGRLVS-FGQNTLQFFIGFGIMLYLLFFLFRDGAELGRKIRQ-AIPLNDDYTRQFLE 219

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTA 264
               VIR+T  G  IIAI +G + G  +WL GV + +  GV+   ++M+P  GA + +  
Sbjct: 220 KFTAVIRATVKGNIIIAIIQGTIGGVTFWLLGVEAALLWGVMMTFLSMLPAVGAALVWIP 279

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            + +    G   +   L   G   + +VD  LRP LVG   ++P        VGG+  +G
Sbjct: 280 AAAWFFASGEWISGAVLIFVGVFVIGLVDNLLRPPLVGKGTRMPDYVVLISTVGGISLIG 339

Query: 325 LLGLFIGPVLMALIAVIWK 343
           + G  +GP++ A+    W 
Sbjct: 340 INGFVVGPLIAAMFIAAWS 358


>gi|145300900|ref|YP_001143741.1| permease [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853672|gb|ABO91993.1| putative permease [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 362

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 151/329 (45%), Gaps = 23/329 (6%)

Query: 19  IILVSLYF-LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           I+++S +  L+ F   ++ A +I   +WP+               A+  T+ ++ +F++P
Sbjct: 20  ILIISCFMVLRPFLPALVWATMITIATWPLMRMVQRLLWGKRMLAALFMTLVLLLMFVIP 79

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPR--WLSDIP-GGMWASELWTKHLSHPQSL- 133
           L F+    + E   ++ ++     H  P P   WL  IP  G    E W + L+    + 
Sbjct: 80  L-FMALANVAEQAPMLIELGTTISHS-PPPELLWLQQIPLVGTKLYEFWQQILASGGQVL 137

Query: 134 -KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
              L+  F +T    ++   A   G++F+ + L++    +     Y  G  ++  +    
Sbjct: 138 FTKLAPYFGQTA--RWLASQAGNLGLLFVHFLLTVGICGV----LYHSGEMVATGIRRFA 191

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT--AI 250
             L        + +  + IR+  +G+ + A+ +  V G    +AG+P  + L V+    I
Sbjct: 192 HRLAGERGDNATVLASQAIRAVAMGVVVTALVQSSVAGIGLLIAGIPYTMVLVVVMFLLI 251

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF--IVDKTLRPFLVGGPIKLP 308
           +A I G  P+    +  YL   G+    T L +W    LF   +D  LRPFL+     LP
Sbjct: 252 VAQI-GPFPVLLACIG-YLYWSGDTTWGTFLLVW---SLFAGTMDNILRPFLIKRGADLP 306

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
            +    G++GG+ TMG++GLFIGPV++A+
Sbjct: 307 LILILVGVIGGLLTMGIIGLFIGPVVLAV 335


>gi|78063136|ref|YP_373044.1| hypothetical protein Bcep18194_B2289 [Burkholderia sp. 383]
 gi|77971021|gb|ABB12400.1| protein of unknown function UPF0118 [Burkholderia sp. 383]
          Length = 353

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 139/306 (45%), Gaps = 28/306 (9%)

Query: 62  LAVIATVSVMCLFIV-PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           LA + T+S++ L ++ PL+F+    + E+  +  ++  A  +     ++  DI   + +S
Sbjct: 63  LAALVTLSLIVLIVILPLVFVAATLVQEIAYVYQEIKTAQPN---YSQYFQDIIHALPSS 119

Query: 121 ELWTKHLSHPQSLKILSETFLK-TNGIDFIPRFAS----RFGMIFLDYCLSIIFMIIALF 175
               +HL     L  L     K T+G   I + A+      G     + +S   M+  +F
Sbjct: 120 ---IQHLLQKYGLSNLPGIQKKLTDGAAQISQLAATQALSIGQNTFQFVVSFGVMLYMVF 176

Query: 176 FFYRDGFSISQQ------LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
           F  RDG  I ++      LD   ++L  A +         V+R+T  G   +A+ +G + 
Sbjct: 177 FLLRDGGEIGRRVRRALPLDDEHKNLLLAKFTT-------VVRATVKGNIAVALVQGALG 229

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
           G  +W+ G+   V  G + A ++++P  GA + +   ++Y L+ G ++    L  +    
Sbjct: 230 GLIFWILGIEGVVLWGALMAFLSLLPAIGASLVWVPAALYFLMIGALWKCAILVAFCVGV 289

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           + +VD  LRP LVG   K+P        +GG+   G+ G  IGP++ AL    W   I A
Sbjct: 290 IGLVDNLLRPILVGKDTKMPDWVVLISTLGGMALFGITGFVIGPLVAALFMASW--DIYA 347

Query: 349 IKENKE 354
             E  E
Sbjct: 348 RSEQGE 353


>gi|189501154|ref|YP_001960624.1| hypothetical protein Cphamn1_2238 [Chlorobium phaeobacteroides BS1]
 gi|189496595|gb|ACE05143.1| protein of unknown function UPF0118 [Chlorobium phaeobacteroides
           BS1]
          Length = 379

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 5/154 (3%)

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           LGE        K + +    IR TF    +I I +G + G A  +AG+ S +  G +  +
Sbjct: 201 LGERDQSRMLDKFTSVTGATIRGTF----VIGILQGTLAGLALKVAGIESAIFWGAVMTV 256

Query: 251 MAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +++IP  G+ + +    +YL   G   +AT L L+  + +  VD  LRP LVG   K+  
Sbjct: 257 LSIIPIIGSGLVWGPAVLYLYATGEYVSATGLLLFCGLLVSSVDNILRPILVGRDTKMHE 316

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L  FFG  GG+   G+ G  +GPV+ AL   +W+
Sbjct: 317 LLIFFGTFGGISLFGISGFIVGPVIAALFITVWE 350


>gi|110634577|ref|YP_674785.1| hypothetical protein Meso_2229 [Mesorhizobium sp. BNC1]
 gi|110285561|gb|ABG63620.1| protein of unknown function UPF0118 [Chelativorans sp. BNC1]
          Length = 392

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 98/189 (51%), Gaps = 12/189 (6%)

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP---KVIRSTFLG 217
           ++  ++++ +   LF+F RD       + +LGE   P    + + IV      + +T  G
Sbjct: 170 INQAITLLLVFYMLFYFLRDR---KLAVRALGE-FSPLNGDETAHIVAGFVDTVHATMFG 225

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIF 276
             I+A  +G + G  +WL G+P+    G++  ++A++P  GA + +   +I+L ++G   
Sbjct: 226 TLIVAAVQGTLGGLMFWLLGLPAPAFWGLVMGLLAIVPVLGAFVVWVPAAIFLAVEGEWV 285

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP---- 332
            A  L +WG + +  +D  L P  VG  +KL  +  F G VGG+   G  GL +GP    
Sbjct: 286 RALVLVIWGGVIIATIDNLLYPIFVGNRLKLHTVLAFIGAVGGIILFGASGLVLGPATIS 345

Query: 333 VLMALIAVI 341
           + +ALIAV+
Sbjct: 346 ITLALIAVL 354


>gi|307318663|ref|ZP_07598096.1| protein of unknown function UPF0118 [Sinorhizobium meliloti AK83]
 gi|306895690|gb|EFN26443.1| protein of unknown function UPF0118 [Sinorhizobium meliloti AK83]
          Length = 359

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 106/219 (48%), Gaps = 16/219 (7%)

Query: 138 ETFLKTNGI-----DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           ET L   GI      ++  F++ F    +   +  I     LF+F RDG    Q L +L 
Sbjct: 138 ETQLDLAGIAGSATSWLTNFSASFVRGSVAQIVDAILTFYFLFYFLRDG---QQALGALK 194

Query: 193 EHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           E+  P   ++++R+   V + +++   G   +A  +G + G  +WL G+P+ V  G+   
Sbjct: 195 EY-SPLSSQEMNRLFTRVNETVQAVVFGTVAVAAVQGAMGGLMFWLLGLPAPVVWGLAMG 253

Query: 250 IMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++A++P  GA I +   ++ L + G    A  L  WGA  +  +D  L P  VG  +KL 
Sbjct: 254 LLAVVPVLGAFIVWLPAALSLALGGEWGKALILVAWGAGVVATIDNLLYPIFVGDRLKLH 313

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPV---LMALIAVIWKE 344
            L  F  ++GG+   G  GL IGPV   +  L+  IW+ 
Sbjct: 314 TLTAFMSMIGGIIVFGSAGLVIGPVAFTVTLLLLDIWRR 352


>gi|15640644|ref|NP_230273.1| hypothetical protein VC0624 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|9655058|gb|AAF93790.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
          Length = 361

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 154/348 (44%), Gaps = 23/348 (6%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           L   + ++ +   ++ A II    +PI+  F  K    +   A ++ V +  + ++PLL 
Sbjct: 23  LACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAAFLSCVVLTVIIVIPLLL 82

Query: 81  LFYYGMLEMKELVSKVVLA--NQHGIPVPRWLSDIPGGMWASELWTKHLS----HPQSLK 134
           +F   +++     S+ + A   Q GI     L + P  +    L   +L      PQ + 
Sbjct: 83  IFG-AIVQQGSKFSQNLYAWVTQGGIQA---LFNHPWVVKGLSLANHYLPFEEISPQQIA 138

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                F  T G + +   A   G     + +    M+  LFF  RD      ++ S   H
Sbjct: 139 QRIGQFATTFGSNLVSISAKILGDA-TSFVMHFFLMLFVLFFLLRD----HDKIISAIRH 193

Query: 195 LFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
           + P    +  R+   +  V +S  +G  + AI +G+  G   WLAG P  +  G +    
Sbjct: 194 ILPLSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAGGIGMWLAGFPG-LFWGTMMGFA 252

Query: 252 AMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + IP  G  + +   ++YL + G+   A  L +W    +  +D  LRPFL+ G   +  L
Sbjct: 253 SFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAVVGSIDNLLRPFLMQGSAGMNTL 312

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAV---IWKESIMAIKENKEK 355
             FF L+GG++  GL+GL  GP++ A+  V   I++E   +  + +++
Sbjct: 313 MIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQQDR 360


>gi|289523414|ref|ZP_06440268.1| putative membrane protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503106|gb|EFD24270.1| putative membrane protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 364

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 89/171 (52%), Gaps = 10/171 (5%)

Query: 172 IALFFFYRDGFSISQQLDS---LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLV 228
           ++ F+  RDG  + + LD    L +    + +   +R++  V+    +G T+ A G    
Sbjct: 180 VSTFYLLRDGHVVIEYLDDILPLPKEERASLFTSATRMMKAVV----IGTTVTA-GIQAC 234

Query: 229 LGSAYWL-AGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           LG A W   G+P+ +  GV+  I AMIP  G P      ++YL + GN+  +  L  W  
Sbjct: 235 LGVAGWFFLGLPAPLLAGVLLFICAMIPFIGTPFVLIPAAVYLFLMGNVKESIILAGWAL 294

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           + +  +D  +RP  +    ++ FL  F G+VGG+   G LG+F+GP++++L
Sbjct: 295 LVVSTIDNLIRPLFISEGSRVHFLLVFLGVVGGIHVWGFLGIFLGPIVLSL 345


>gi|59712743|ref|YP_205519.1| permease [Vibrio fischeri ES114]
 gi|59480844|gb|AAW86631.1| predicted permease [Vibrio fischeri ES114]
          Length = 361

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 158/374 (42%), Gaps = 50/374 (13%)

Query: 13  RWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
            W+++  +L + Y     ++ +  P++ A I+     P+++    +   S    A+++ +
Sbjct: 11  HWVLIAALLAAGYACFLLIEPYLNPIILAFIMSLLFAPLHNKISDRLPNSPNSAAILSCM 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           ++  +  +PL F+F   +++     SK             W+ D  GG+           
Sbjct: 71  ALTFIIAIPLFFVFI-AIVQQGATFSK---------DAYHWVID--GGI------QTLFQ 112

Query: 129 HPQSLKILS--ETFLKTNGID------FIPRFASRFGMIFLDYCLSIIFMIIALFF---- 176
           HP   K+LS    +L  + ID       + + AS+ G   +     I+  +  +      
Sbjct: 113 HPFVAKVLSFINKYLPFDAIDPAEVTQKVAQLASQIGTRIVGMSAQIVGDVTNVLMNFFL 172

Query: 177 -------FYRDGFSISQQLDSLGEHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEG 226
                    RD      ++ S   H+ P    +  R+   + +V +S  LG  + AI +G
Sbjct: 173 MLFVLFFLLRD----QDKIISAFRHVLPLSRSQEDRLLDEIEQVSKSAVLGSFLTAIAQG 228

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           +  G A WLAG P  +  G +    + IP  G  + +   +IYLL+      A  L  WG
Sbjct: 229 IAGGFAMWLAGFPG-LFWGTMMGFASFIPVVGTALIWVPATIYLLLTNQWEWAIFLTAWG 287

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            + +  +D  +RP L+ G   +  L  FF L+GG++  GL+GL  GP++ AL  V++   
Sbjct: 288 VLVVGSIDNIVRPLLMQGNSGMNTLLIFFSLLGGIQLYGLIGLIYGPIIFALTLVLFNMY 347

Query: 346 IMAIKENKEKISSN 359
               K   ++   N
Sbjct: 348 ETEFKSFLDQQDKN 361


>gi|307303487|ref|ZP_07583241.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
 gi|306902878|gb|EFN33470.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
          Length = 359

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 106/219 (48%), Gaps = 16/219 (7%)

Query: 138 ETFLKTNGI-----DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           ET L   GI      ++  F++ F    +   +  I     LF+F RDG    Q L +L 
Sbjct: 138 ETQLDLAGIAGSATSWLTNFSASFVRGSVAQIVDAILTFYFLFYFLRDG---QQALGALK 194

Query: 193 EHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           E+  P   ++++R+   V + +++   G   +A  +G + G  +WL G+P+ V  G+   
Sbjct: 195 EY-SPLSSQEMNRLFTRVNETVQAVVFGTVAVAAVQGAMGGLIFWLLGLPAPVVWGLAMG 253

Query: 250 IMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++A++P  GA I +   ++ L + G    A  L  WGA  +  +D  L P  VG  +KL 
Sbjct: 254 LLAVVPVLGAFIVWLPAALSLALGGEWGKALILVAWGAGVVATIDNLLYPIFVGDRLKLH 313

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPV---LMALIAVIWKE 344
            L  F  ++GG+   G  GL IGPV   +  L+  IW+ 
Sbjct: 314 TLTAFMSMIGGIIVFGSAGLVIGPVAFTVTLLLLDIWRR 352


>gi|27375768|ref|NP_767297.1| hypothetical protein bll0657 [Bradyrhizobium japonicum USDA 110]
 gi|27348906|dbj|BAC45922.1| bll0657 [Bradyrhizobium japonicum USDA 110]
          Length = 367

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 107/204 (52%), Gaps = 5/204 (2%)

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL-DSLGEHLFPAYWKKISRIVPKVI 211
           A   G + +++  S++ M+  LFFF RDG  ++ ++ D+L   L  ++   I       +
Sbjct: 164 AINIGQLTVEFVASLLVMLYLLFFFLRDGDELNLRIRDAL--PLRRSHTAAILDAFTLSV 221

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLL 270
           R T  G+ ++A+ +G + G  +WL G+ + +  G + A+++++P  G+ + +  V +YLL
Sbjct: 222 RGTIKGIILVALIQGALGGLIFWLLGLTAPLLAGALMALLSLLPVLGSALVWVPVGLYLL 281

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           + G +     L ++G   + + D  LRP LVG  I++P        +GG+ T G  G  I
Sbjct: 282 VAGAVTKGMILLVFGTFVIGLADNFLRPVLVGQSIRMPSYVVLLATLGGLATFGANGFVI 341

Query: 331 GPVLMALIAVIWKESIMAIKENKE 354
           GP++ A+    W    +  KE +E
Sbjct: 342 GPLVAAMFLTAW-HIFVGSKEQQE 364


>gi|254253542|ref|ZP_04946859.1| hypothetical protein BDAG_02809 [Burkholderia dolosa AUO158]
 gi|124898187|gb|EAY70030.1| hypothetical protein BDAG_02809 [Burkholderia dolosa AUO158]
          Length = 350

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 102/223 (45%), Gaps = 20/223 (8%)

Query: 143 TNGIDFIPRFAS----RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ------LDSLG 192
           T G   I +FA+      G     + +S   M+  +FF  RDG  I ++      LD   
Sbjct: 137 TEGAAQISQFAAAQALSIGQNTFQFIVSFGVMLYMVFFLLRDGGEIGRRVRRALPLDEEH 196

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           ++L  A +         V+R+T  G   +A+ +G++ G  +W+ G+   V  G + A ++
Sbjct: 197 KNLLLAKFTT-------VVRATVKGNIAVALVQGILGGLIFWILGIQGVVLWGALMAFLS 249

Query: 253 MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++P  GA + +   ++Y L  G I+    L  +    + +VD  LRP LVG   K+P   
Sbjct: 250 LLPAIGASLVWVPAALYFLATGAIWKCVILVAFCVGVIGLVDNLLRPILVGKDTKMPDWV 309

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                +GG+   G+ G  IGP++ AL    W   I A  E  E
Sbjct: 310 VLISTLGGMALFGINGFVIGPLVAALFMASW--DIYARSEQSE 350


>gi|220904315|ref|YP_002479627.1| protein of unknown function UPF0118 [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219868614|gb|ACL48949.1| protein of unknown function UPF0118 [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 368

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 135/305 (44%), Gaps = 40/305 (13%)

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A+I  ++V+ L + P       G   ++EL      AN   +PV  W++ I       + 
Sbjct: 88  ALIVPIAVLVLLVSPQA---AAGFTRLRELQ-----ANNFQLPV-EWVNYI-------QQ 131

Query: 123 WTKHLS-HPQSLKILSETFLK-------------TNGIDFIPRFASRFGMIFLDYCLSII 168
           W + L+ HP+  +  ++  ++             + G+DF+    +     FL   L++I
Sbjct: 132 WRQSLTEHPRLERAFNDLLMRLDSFFDTAMGLLLSRGVDFLGGTMTVLWTSFLFVSLTVI 191

Query: 169 FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLV 228
           F I     + R    I+ ++  + + +   +   I R     +R   LG+ ++A+ +G +
Sbjct: 192 FTI-----YSRRVRKITGRIFHISQSMLRRFITAIHR----ALRGIMLGIVLVALAQGFL 242

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
            G A+ +AGV      G++  ++A IP  G  + +  + I L   G    A  L LWG +
Sbjct: 243 CGVAFAVAGVNQPAFWGLLATLVAPIPMVGTALVWLPLCISLWFTGKSMAAIGLGLWGML 302

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            +  VD  LRP  +   IK PF      ++ G+ + G +GL  GPVL+A      +E+  
Sbjct: 303 AVAGVDNVLRPLFLRQGIKAPFFVLIIAILCGLSSFGPVGLIAGPVLLAFAMQAVEEANR 362

Query: 348 AIKEN 352
             K N
Sbjct: 363 IYKYN 367


>gi|146282264|ref|YP_001172417.1| putative lipoprotein [Pseudomonas stutzeri A1501]
 gi|145570469|gb|ABP79575.1| lipoprotein, putative [Pseudomonas stutzeri A1501]
 gi|327480512|gb|AEA83822.1| putative lipoprotein [Pseudomonas stutzeri DSM 4166]
          Length = 364

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 144/317 (45%), Gaps = 12/317 (3%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + L  F + +  A ++ F SWP+          ++T  A + T S M L  VPL++L + 
Sbjct: 22  WVLAPFASALFWAAVLAFASWPVMRLLTRWLNGNATLAAGLLTFSWMVLVAVPLVWLGFN 81

Query: 85  GMLEMKELVSKVVLANQHGIP-VPRWLSDIPG-GMWASELWTKHLSHPQSLKILSETFLK 142
              ++++  + +      G+P  P WL ++P  G      W        +L      ++ 
Sbjct: 82  IADQIRDANALLHDLQVEGLPPAPEWLGELPLIGDSLVNFWNTVDEQGTALIASIRPYIG 141

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 + R ++R G   L+  LS++ +    FFFYRDG  +S  + SL   L       
Sbjct: 142 QVANWLLVR-SARIGGGMLELALSLVLV----FFFYRDGPRLSAFVHSLLHRLIGDRADH 196

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA--MIPGGAPI 260
              +V   ++    G+   A  + ++    + +AG+P  + LG++T   +  M+P   P+
Sbjct: 197 YLELVAGTVQRVVNGVIGTAAAQAILAYIGFLIAGIPGALVLGLLTFACSFIMVP---PL 253

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +     +L  +G+   A  L +WG   +  VD  L+P+L+     LP +    G+ GG+
Sbjct: 254 IWGPAVAWLAWQGDYGMAVFLGIWGMFVISGVDNVLKPYLISRGGNLPLVVVLLGVFGGI 313

Query: 321 RTMGLLGLFIGPVLMAL 337
              G +GLF+GP L+A+
Sbjct: 314 LAFGFMGLFLGPTLLAV 330


>gi|115360276|ref|YP_777414.1| hypothetical protein Bamb_5533 [Burkholderia ambifaria AMMD]
 gi|115285564|gb|ABI91080.1| protein of unknown function UPF0118 [Burkholderia ambifaria AMMD]
          Length = 355

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 102/223 (45%), Gaps = 20/223 (8%)

Query: 143 TNGIDFIPRFAS----RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ------LDSLG 192
           T+G   I +FA+      G     + +S   M+  LFF  RDG  I ++      LD   
Sbjct: 142 TDGAAQISQFAATQALSIGQNTFQFVVSFGVMLYMLFFLLRDGGEIGRRVRRSIPLDEEH 201

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           ++L  A +         V+R+T  G   +A+ +G + G  +W+ G+   V  G + A ++
Sbjct: 202 KNLLLAKFTT-------VVRATVKGNIAVALVQGALGGLIFWILGIEGVVLWGALMAFLS 254

Query: 253 MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++P  GA + +   ++Y L  G I+    L  +    + +VD  LRP LVG   K+P   
Sbjct: 255 LLPAIGASLVWIPAALYFLAIGAIWKCVILVAFCVGVIGLVDNLLRPILVGKDTKMPDWV 314

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                +GG+   G+ G  IGP++ AL    W   I A  E  E
Sbjct: 315 VLISTLGGMALFGINGFVIGPLVAALFMASW--DIYARSEQGE 355


>gi|251771895|gb|EES52469.1| conserved hypothetical protein [Leptospirillum ferrodiazotrophum]
          Length = 369

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 159/330 (48%), Gaps = 21/330 (6%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  +  P+L A I+ F ++P+ + F+ +        A++ TV  + L I PLL    + +
Sbjct: 34  LAPYVVPLLWAAILAFATYPLLA-FLRRFVTRPLLSALLMTVLFLGLVIAPLL---SFAL 89

Query: 87  LEMKELVSKVV-----LANQHGIPVPRWLSDIPGGMWASELWTKHL-SHPQSLKILSETF 140
              +E++++V      L N     +P W+  +P     +E W ++  SH  SL I  +  
Sbjct: 90  PLTQEILTEVAKIRGFLENPQAT-LPPWVDHLPVIGPRAEGWYQNFRSHTPSLSIFLDK- 147

Query: 141 LKTNGIDFIPRFASRFGMIFLDY---CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF- 196
           L+++ + +      R   I  D     +  + +++ LF FY  G ++   + +L      
Sbjct: 148 LQSHLLTW----GDRLFSIMTDAGKIAVKTLILLLGLFAFYLRGPALWAGIRTLLLRFGG 203

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
           PA  +  ++I P V R    GM   A+ +  + G  + +A VP  + L  +   +A+ P 
Sbjct: 204 PATERPFNQIAP-VTRGVVYGMFFTALSQAALAGIGFGVARVPEALLLTFLLFFLALFPM 262

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           GA   +   S  LL +G         +W AI +  ++  ++P  +G   ++PF+    G+
Sbjct: 263 GAVAVWLPASFTLLAQGRTLAFLLFLVWNAIVVGGIENVIKPLFIGRSSEMPFILILLGV 322

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           +GG+   G++GLFIGPV++ ++  +W+++I
Sbjct: 323 LGGLEAFGIIGLFIGPVILVILQTLWQDAI 352


>gi|320352416|ref|YP_004193755.1| hypothetical protein Despr_0280 [Desulfobulbus propionicus DSM
           2032]
 gi|320120918|gb|ADW16464.1| protein of unknown function UPF0118 [Desulfobulbus propionicus DSM
           2032]
          Length = 404

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 74/137 (54%), Gaps = 3/137 (2%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSI 267
            V ++T  G  II   +G + G A+ LAG+   V  G + A+M++IP  G  I +    I
Sbjct: 203 SVTKATLKGTLIIGALQGFICGVAFALAGIQGPVFWGTVMAVMSIIPAFGTAIVWVPALI 262

Query: 268 YLLIKGNIFNATCL-FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
            L +KG  F A  L  L GA+   + D  LRP LVG   ++  L   FG +GG+   G+L
Sbjct: 263 ILALKGQFFGAVILGVLCGAVAGNL-DNLLRPRLVGKDTEMHDLFVLFGTLGGISMFGVL 321

Query: 327 GLFIGPVLMALIAVIWK 343
           G+ IGP++ AL   IW+
Sbjct: 322 GIIIGPIVAALFITIWE 338


>gi|254248847|ref|ZP_04942167.1| hypothetical protein BCPG_03698 [Burkholderia cenocepacia PC184]
 gi|124875348|gb|EAY65338.1| hypothetical protein BCPG_03698 [Burkholderia cenocepacia PC184]
          Length = 353

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 103/223 (46%), Gaps = 20/223 (8%)

Query: 143 TNGIDFIPRFAS----RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ------LDSLG 192
           T+G   I +FA+      G     + +S   M+  +FF  RDG  I ++      LD   
Sbjct: 140 TDGAAQISQFAATQALSIGQNTFQFVVSFGVMLYMVFFLLRDGGEIGRRVRRALPLDEEH 199

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           ++L  A +         V+R+T  G   +A+ +G + G  +W+ G+   V  G + A ++
Sbjct: 200 KNLLLAKFTT-------VVRATVKGNIAVALVQGALGGLIFWILGIEGVVLWGALMAFLS 252

Query: 253 MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++P  GA + +   ++Y L+ G I+    L  +    + +VD  LRP LVG   K+P   
Sbjct: 253 LLPAIGASLVWVPAALYFLMIGAIWKCVILVAFCVGVIGLVDNLLRPILVGKDTKMPDWV 312

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                +GG+   G+ G  IGP++ AL    W   I A  E  E
Sbjct: 313 VLISTLGGMALFGINGFVIGPLVAALFMASW--DIYARSEQGE 353


>gi|325528611|gb|EGD05706.1| hypothetical protein B1M_05106 [Burkholderia sp. TJI49]
          Length = 350

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 103/223 (46%), Gaps = 20/223 (8%)

Query: 143 TNGIDFIPRFASR----FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ------LDSLG 192
           T+G   I +FA+      G     + +S   M+  +FF  RDG  I ++      LD   
Sbjct: 137 TDGAAQISQFAASQALSIGQNTFQFIVSFGVMLYMVFFLLRDGGEIGRRVRRALPLDEEH 196

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           ++L  A +         V+R+T  G   +A+ +G + G  +W+ G+   V  G + A ++
Sbjct: 197 KNLLLAKFTT-------VVRATVKGNIAVALVQGALGGLIFWILGIQGVVLWGALMAFLS 249

Query: 253 MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++P  GA + +   ++Y L+ G ++    L  +    + +VD  LRP LVG   K+P   
Sbjct: 250 LLPAIGASLVWVPAALYFLMTGAVWKCVILVAFCVGVIGLVDNLLRPILVGKDTKMPDWV 309

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                +GG+   G+ G  IGP++ AL    W   I A  E  E
Sbjct: 310 VLISTLGGMALFGINGFVIGPLVAALFMASW--DIYARAEQGE 350


>gi|256059328|ref|ZP_05449530.1| hypothetical protein Bneo5_03088 [Brucella neotomae 5K33]
          Length = 352

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 158/334 (47%), Gaps = 20/334 (5%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF----YYG 85
           ++  VL A+I+    +P+    +          A ++ +  +CL I+P+L +F      G
Sbjct: 26  YYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAFLSVLMCICLVIIPMLAIFGSLVDEG 85

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL---SHPQSLKILSETFLK 142
               + L S+    N +   + R ++ +P  +   E W K     +       +S   ++
Sbjct: 86  TSLYQRLSSREFDINGY---IARIMAALPESL---EEWLKRFELGTFADWRARISSVVMQ 139

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            + + F  R  S FG   L + +    M+  LFF +RDG  + +++      L   Y ++
Sbjct: 140 GSQL-FAARLVS-FGQNTLQFFIGFGIMLYLLFFLFRDGADVGKKIRR-AIPLSDDYTRQ 196

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPIS 261
                  VIR+T  G  IIAI +G++ G  +WL G+ + +  GVI    +M+P  GA + 
Sbjct: 197 FLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAALLWGVIMTFCSMLPAVGAALV 256

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +T  +++  + G+ ++   L + G + + +VD  LR  LVG   ++P        VGG+ 
Sbjct: 257 WTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRLPLVGKGTRMPDYVVLISTVGGIS 316

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            +G+ G  IGP++ A+    W  S++A +E K++
Sbjct: 317 LIGINGFVIGPLIAAMFIAAW--SLLA-EEQKDQ 347


>gi|261323287|ref|ZP_05962484.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261299267|gb|EEY02764.1| conserved hypothetical protein [Brucella neotomae 5K33]
          Length = 354

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 158/334 (47%), Gaps = 20/334 (5%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF----YYG 85
           ++  VL A+I+    +P+    +          A ++ +  +CL I+P+L +F      G
Sbjct: 28  YYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAFLSVLMCICLVIIPMLAIFGSLVDEG 87

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL---SHPQSLKILSETFLK 142
               + L S+    N +   + R ++ +P  +   E W K     +       +S   ++
Sbjct: 88  TSLYQRLSSREFDINGY---IARIMAALPESL---EEWLKRFELGTFADWRARISSVVMQ 141

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            + + F  R  S FG   L + +    M+  LFF +RDG  + +++      L   Y ++
Sbjct: 142 GSQL-FAARLVS-FGQNTLQFFIGFGIMLYLLFFLFRDGADVGKKIRR-AIPLSDDYTRQ 198

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPIS 261
                  VIR+T  G  IIAI +G++ G  +WL G+ + +  GVI    +M+P  GA + 
Sbjct: 199 FLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAALLWGVIMTFCSMLPAVGAALV 258

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +T  +++  + G+ ++   L + G + + +VD  LR  LVG   ++P        VGG+ 
Sbjct: 259 WTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRLPLVGKGTRMPDYVVLISTVGGIS 318

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            +G+ G  IGP++ A+    W  S++A +E K++
Sbjct: 319 LIGINGFVIGPLIAAMFIAAW--SLLA-EEQKDQ 349


>gi|238753651|ref|ZP_04615013.1| hypothetical protein yruck0001_13830 [Yersinia ruckeri ATCC 29473]
 gi|238708203|gb|EEQ00559.1| hypothetical protein yruck0001_13830 [Yersinia ruckeri ATCC 29473]
          Length = 367

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 151/347 (43%), Gaps = 12/347 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I+ +I+   + ++ F      A ++   +WP+     +      +   +I T+ ++ LF+
Sbjct: 21  ILTMIIACFWVVQPFIMGFAWAGMVVIATWPLLIKLQAVLWGRRSLAVIIMTLLLVLLFV 80

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK-HLSHPQSLK 134
           +P+  L    +     L+          IP   WL  IP  M   +L++  H       K
Sbjct: 81  IPIALLVSSLVENSAPLIKSASSPANLQIPEAAWLKSIP--MIGDKLYSSWHTLLAGGGK 138

Query: 135 IL---SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +L    + ++      F+ + A+  G   L   L ++F ++     Y  G S++Q +   
Sbjct: 139 VLIAKVQPYVGETATWFVAQ-AAHIGRFLLHLALMVLFSVL----LYFRGESVAQGIRHF 193

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L          +  + IR+  LG+ + A+ +G++ G    +AG+P  + L V+  + 
Sbjct: 194 AIRLADQRGDAAVVLAAQSIRAVALGVVVTALVQGILGGIGLAIAGIPYAMLLTVVMFVC 253

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +   G  +      I+L   G+    T L +W  I +  +D  LRP L+     LP + 
Sbjct: 254 CVAQLGPLLVLIPAVIWLYWSGDNTFGTLLLVWSCI-VGTLDGVLRPALIRMGADLPMVL 312

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
              G++GG+ + G++GLFIGPV++A+   +    I    E +E I+ 
Sbjct: 313 ILSGVIGGLLSFGMIGLFIGPVVLAVSYRLIAAWIHEAPEPEENIAE 359


>gi|209521729|ref|ZP_03270416.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
 gi|209497846|gb|EDZ98014.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
          Length = 371

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 150/340 (44%), Gaps = 13/340 (3%)

Query: 5   MLNPQGIMRWMIMFIILV----SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M + Q I R   +F ++V    SL  L  F   +L   I+ ++SW +Y            
Sbjct: 1   MKSDQLIERLAAVFALIVLVGGSLLVLAPFTTALLWGAILSYSSWGLYRRLTGVVGGRRK 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMW 118
             A +  + ++ + + P ++  +     + ++V+ V    + G+P +P W+  IP  G  
Sbjct: 61  LAATLIVLIILVVVLGPFVYAGFAFGTHVHQIVALVERLFESGLPDLPPWVQRIPLVGSS 120

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPR-FASRFGMIFLDYCLSIIFMIIALFFF 177
               W +  S    L     T     G   +    A   G+  L   LSI+      FFF
Sbjct: 121 IEAFWERVTSSNSELIAQLRTLAAPAGKWILAAGLAVTHGLGLL--ALSIVLA----FFF 174

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
           Y  G   +  L++    +       +  +    ++    G+   A+ + ++ G   WLAG
Sbjct: 175 YTGGEGAAAWLNAGMRRVAGERADYLLALAGSTVKGVVYGILGTALVQAVLAGFGCWLAG 234

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           VP+   LG+ T  ++++PGG  I +   +I+L   G+   A  L +WG + + + D  ++
Sbjct: 235 VPAPALLGLATFFLSVVPGGPVIVWLPAAIWLYQGGSTGWAIFLVVWGVLVVGMSDNVIK 294

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           P L+G    +P +    G++GG    G LG+FIGP L+A+
Sbjct: 295 PILIGKNSDMPLILVMLGILGGALAFGFLGVFIGPTLLAV 334


>gi|330828110|ref|YP_004391062.1| hypothetical protein B565_0410 [Aeromonas veronii B565]
 gi|328803246|gb|AEB48445.1| Putative membrane protein [Aeromonas veronii B565]
          Length = 361

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 145/325 (44%), Gaps = 15/325 (4%)

Query: 19  IILVSLYFLKGFFAPVLS-ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           I+++S + +   F P L  A +I   +WP+            T  A+  T+ ++ +F++P
Sbjct: 20  ILIISCFLVLQPFLPALVWATMITIATWPLMLMVQRLLWGKRTLAALFMTLVLLLMFVIP 79

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL--K 134
           L         +   L+      +Q   P   WL  IP  G    + W + L+    +   
Sbjct: 80  LFMTLANVAEKAPMLIELGTHISQSPPPELLWLQQIPLVGDKLYDFWQQILASGGQVLFA 139

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
            L+  F +T    ++   A   G++F+ + L++    +     Y  G  ++  +      
Sbjct: 140 KLAPYFGQTA--RWLASQAGNLGLLFVHFLLTVGICGV----LYHSGEVVATGIRRFAHR 193

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT--AIMA 252
           L        + +  + IR+  +G+ + A+ +  V G    +AG+P  + L V+    I+A
Sbjct: 194 LAGQRGDNATVLASQAIRAVAMGVVVTALVQSSVAGVGLLIAGIPYAMVLVVVMFLLIVA 253

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
            I G  P+    +  YL   G+    T L +W  I    +D  LRPFL+     LP +  
Sbjct: 254 QI-GPFPVLLACIG-YLYWSGDTTWGTFLLVWSLIA-GTMDNFLRPFLIKRGADLPLILI 310

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMAL 337
             G++GG+ TMG++GLFIGPV++A+
Sbjct: 311 LVGVIGGLLTMGIIGLFIGPVVLAV 335


>gi|206562699|ref|YP_002233462.1| hypothetical protein BCAM0842 [Burkholderia cenocepacia J2315]
 gi|198038739|emb|CAR54700.1| putative membrane protein [Burkholderia cenocepacia J2315]
          Length = 350

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 103/223 (46%), Gaps = 20/223 (8%)

Query: 143 TNGIDFIPRFAS----RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ------LDSLG 192
           T+G   I +FA+      G     + +S   M+  +FF  RDG  I ++      LD   
Sbjct: 137 TDGAAQISQFAAAQALSIGQNTFQFVVSFGVMLYMVFFLLRDGGEIGRRVRRALPLDEEH 196

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           ++L  A +         V+R+T  G   +A+ +G + G  +W+ G+   V  G + A ++
Sbjct: 197 KNLLLAKFTT-------VVRATVKGNIAVALVQGALGGLIFWILGIEGVVLWGALMAFLS 249

Query: 253 MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++P  GA + +   ++Y L+ G ++    L  +    + +VD  LRP LVG   K+P   
Sbjct: 250 LLPAIGASLVWVPAALYFLMIGAVWKCVILVAFCVGVIGLVDNLLRPILVGKDTKMPDWV 309

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                +GG+   G+ G  IGP++ AL    W   I A  E  E
Sbjct: 310 VLISTLGGMALFGINGFVIGPLVAALFMASW--DIYARSEQGE 350


>gi|170736099|ref|YP_001777359.1| hypothetical protein Bcenmc03_3717 [Burkholderia cenocepacia MC0-3]
 gi|169818287|gb|ACA92869.1| protein of unknown function UPF0118 [Burkholderia cenocepacia
           MC0-3]
          Length = 350

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 103/223 (46%), Gaps = 20/223 (8%)

Query: 143 TNGIDFIPRFAS----RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ------LDSLG 192
           T+G   I +FA+      G     + +S   M+  +FF  RDG  I ++      LD   
Sbjct: 137 TDGAAQISQFAATQALSIGQNTFQFVVSFGVMLYMVFFLLRDGGEIGRRVRRALPLDEEH 196

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           ++L  A +         V+R+T  G   +A+ +G + G  +W+ G+   V  G + A ++
Sbjct: 197 KNLLLAKFTT-------VVRATVKGNIAVALVQGALGGLIFWILGIEGVVLWGALMAFLS 249

Query: 253 MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++P  GA + +   ++Y L+ G ++    L  +    + +VD  LRP LVG   K+P   
Sbjct: 250 LLPAIGASLVWVPAALYFLMIGAVWKCVILVAFCVGVIGLVDNLLRPILVGKDTKMPDWV 309

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                +GG+   G+ G  IGP++ AL    W   I A  E  E
Sbjct: 310 VLISTLGGMALFGINGFVIGPLVAALFMASW--DIYARSEQGE 350


>gi|107026899|ref|YP_624410.1| hypothetical protein Bcen_4556 [Burkholderia cenocepacia AU 1054]
 gi|105896273|gb|ABF79437.1| protein of unknown function UPF0118 [Burkholderia cenocepacia AU
           1054]
          Length = 398

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 103/223 (46%), Gaps = 20/223 (8%)

Query: 143 TNGIDFIPRFAS----RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ------LDSLG 192
           T+G   I +FA+      G     + +S   M+  +FF  RDG  I ++      LD   
Sbjct: 185 TDGAAQISQFAATQALSIGQNTFQFVVSFGVMLYMVFFLLRDGGEIGRRVRRALPLDEEH 244

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           ++L  A +         V+R+T  G   +A+ +G + G  +W+ G+   V  G + A ++
Sbjct: 245 KNLLLAKFTT-------VVRATVKGNIAVALVQGALGGLIFWILGIEGVVLWGALMAFLS 297

Query: 253 MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++P  GA + +   ++Y L+ G ++    L  +    + +VD  LRP LVG   K+P   
Sbjct: 298 LLPAIGASLVWVPAALYFLMIGAVWKCVILVAFCVGVIGLVDNLLRPILVGKDTKMPDWV 357

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                +GG+   G+ G  IGP++ AL    W   I A  E  E
Sbjct: 358 VLISTLGGMALFGINGFVIGPLVAALFMASW--DIYARSEQGE 398


>gi|116691904|ref|YP_837437.1| hypothetical protein Bcen2424_3807 [Burkholderia cenocepacia
           HI2424]
 gi|116649904|gb|ABK10544.1| protein of unknown function UPF0118 [Burkholderia cenocepacia
           HI2424]
          Length = 353

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 103/223 (46%), Gaps = 20/223 (8%)

Query: 143 TNGIDFIPRFAS----RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ------LDSLG 192
           T+G   I +FA+      G     + +S   M+  +FF  RDG  I ++      LD   
Sbjct: 140 TDGAAQISQFAATQALSIGQNTFQFVVSFGVMLYMVFFLLRDGGEIGRRVRRALPLDEEH 199

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           ++L  A +         V+R+T  G   +A+ +G + G  +W+ G+   V  G + A ++
Sbjct: 200 KNLLLAKFTT-------VVRATVKGNIAVALVQGALGGLIFWILGIEGVVLWGALMAFLS 252

Query: 253 MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++P  GA + +   ++Y L+ G ++    L  +    + +VD  LRP LVG   K+P   
Sbjct: 253 LLPAIGASLVWVPAALYFLMIGAVWKCVILVAFCVGVIGLVDNLLRPILVGKDTKMPDWV 312

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                +GG+   G+ G  IGP++ AL    W   I A  E  E
Sbjct: 313 VLISTLGGMALFGINGFVIGPLVAALFMASW--DIYARSEQGE 353


>gi|329113453|ref|ZP_08242234.1| UPF0118 inner membrane protein YdiK [Acetobacter pomorum DM001]
 gi|326697278|gb|EGE48938.1| UPF0118 inner membrane protein YdiK [Acetobacter pomorum DM001]
          Length = 363

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 163/345 (47%), Gaps = 29/345 (8%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF--IVPLLFLFYY 84
           L  F + +L A ++ +T+WP++     +   ++  L    T++V+C    ++PL FL   
Sbjct: 29  LAPFSSALLWAGVLAYTTWPLFQHLRRRMGPNAASL----TMTVLCAVGVVLPLAFLASA 84

Query: 85  GMLEMKELVSKVV--LANQHGIP-VPRWLSDIPG------GMWASELWTKHLSH-PQSLK 134
            +        +V+  +   H +P +P W++ +P         W  E W++++S     L+
Sbjct: 85  CVSSGPRWARQVMAFVGTIHELPPLPHWITSLPAFGPDISHHW--ERWSRNISSVGDELR 142

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
             +   +++  ++ + R A        +  L ++  +   FFF+  G  +   + ++   
Sbjct: 143 PYAGEIIQSL-LEVLMRMA--------NGALHLVMALFIAFFFWLSGPMLWDTVQAVMVR 193

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           +      +   IV   +R T  G+   AI +G++ G   WL GV   V LGV+ A +A+ 
Sbjct: 194 IAGHQAGRHLHIVGSTVRGTVYGILGTAIIQGILTGLGLWLLGVGEAVILGVLAAFLAVF 253

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P GAP+ +   +++L    +      L L+G + +   D  +RP  +    KLP+L T  
Sbjct: 254 PIGAPLVWIPAALWLFGMHHPGKGILLLLYGVLIISGADHLIRPLFIARGSKLPYLLTVL 313

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G++GG+   G +G+F+GP+L+A+   +  E   A  E  + ++ +
Sbjct: 314 GVIGGLLAFGGVGIFLGPILLAIGFTLTTE--FAADEAAQPLAQD 356


>gi|16264659|ref|NP_437451.1| hypothetical protein SM_b21335 [Sinorhizobium meliloti 1021]
 gi|15140797|emb|CAC49311.1| conserved putative membrane protein, possibly a permease
           [Sinorhizobium meliloti 1021]
          Length = 359

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 106/219 (48%), Gaps = 16/219 (7%)

Query: 138 ETFLKTNGI-----DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           ET L   GI      ++  F++ F    +   +  I     LF+F RDG    Q L +L 
Sbjct: 138 ETQLDLAGIAGSATSWLTNFSASFVRGSVAQIVDAILTFYFLFYFLRDG---QQALGALK 194

Query: 193 EHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           E+  P   ++++R+   V + +++   G   +A  +G + G  +WL G+P+ +  G+   
Sbjct: 195 EY-SPLSSQEMNRLFTRVNETVQAVVFGTVAVAAVQGAMGGLMFWLLGLPAPMVWGLAMG 253

Query: 250 IMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++A++P  GA I +   ++ L + G    A  L  WGA  +  +D  L P  VG  +KL 
Sbjct: 254 LLAVVPVLGAFIVWLPAALSLALGGEWGKALILVAWGAGVVATIDNLLYPIFVGDRLKLH 313

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPV---LMALIAVIWKE 344
            L  F  ++GG+   G  GL IGPV   +  L+  IW+ 
Sbjct: 314 TLTAFMSMIGGIIVFGSAGLVIGPVAFTVTLLLLDIWRR 352


>gi|256828705|ref|YP_003157433.1| protein of unknown function UPF0118 [Desulfomicrobium baculatum DSM
           4028]
 gi|256577881|gb|ACU89017.1| protein of unknown function UPF0118 [Desulfomicrobium baculatum DSM
           4028]
          Length = 365

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 108/227 (47%), Gaps = 10/227 (4%)

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS---LG 192
           LS+  L ++G  +I + A   G   L + +++  M+   FF  RDG  +   L     LG
Sbjct: 143 LSDFALTSSG--YIAQNALALGQGTLQFFVALGLMLYMAFFMLRDGDKLVATLVRALPLG 200

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                  + K +    +V+R+T  G  ++A  +G++ G  +W+  +   +  GV+  +++
Sbjct: 201 NEREYLLFNKFA----EVVRATVKGNLLVAAVQGILGGFIFWVLDIHGALLWGVVMTLLS 256

Query: 253 MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           +IP  GA + +  V+IYL   G + +   L  +GA  + + D  LRP LVG   KLP   
Sbjct: 257 LIPVIGAGLIWGPVAIYLFAIGELSHGVILVAYGAGVIGLADNILRPLLVGRDTKLPDYI 316

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                +GG    G+ G  +GP++ AL    W+  I     +K   +S
Sbjct: 317 VLLSTLGGFSLFGMNGFVLGPLVAALFIAFWEIFIREFNTSKSGNAS 363


>gi|309780687|ref|ZP_07675428.1| membrane protein [Ralstonia sp. 5_7_47FAA]
 gi|308920369|gb|EFP66025.1| membrane protein [Ralstonia sp. 5_7_47FAA]
          Length = 349

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 153/339 (45%), Gaps = 20/339 (5%)

Query: 15  MIMFIILVSL-YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           +++F++ + L + L  FF  V   +I+     P+  + +++  +     A+     ++ +
Sbjct: 13  LLLFVVTLGLCWILSPFFGAVFWGVILAILFQPVQRALVARMGKRPNLAALATLTLIILI 72

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            I+P++F+    + E+     ++  A  +     R+LS+    + A   W + L     L
Sbjct: 73  VILPVIFVTATIVQEIGVAYQQIQGAQPN---YSRYLSE---AVQALPTWVQQLLAKAGL 126

Query: 134 KILSETFLK-TNGIDFIPRFAS----RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             ++    K  +G   I +FA+      G     + +    M+  +FF  RDG  I +++
Sbjct: 127 TNIAGIQKKLADGAAQISQFAATKALSIGQNTFQFVVGFGVMLYMVFFLLRDGTDIGRRV 186

Query: 189 DSLGEHLFPAYWKKISRIVPK---VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                   P   +    ++ K   V+R+T  G   +A+ +G++ G  +W  G+   V  G
Sbjct: 187 ----RRALPMDEEHKRLLLNKFTTVVRATVKGNIAVALVQGVLGGLIFWFLGIDGVVLWG 242

Query: 246 VITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            + A ++++P  GA + +  V++Y L+ G I+    L  +    + +VD  LRP LVG  
Sbjct: 243 ALMAFLSLLPAIGASLVWIPVALYFLMVGAIWKCVILVAFCGGVIGLVDNLLRPLLVGKD 302

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            K+P        +GG+   G+ G  IGP++ AL    W 
Sbjct: 303 TKMPDWVVLISTLGGMELFGITGFVIGPLVAALFMASWD 341


>gi|283781384|ref|YP_003372139.1| hypothetical protein Psta_3618 [Pirellula staleyi DSM 6068]
 gi|283439837|gb|ADB18279.1| protein of unknown function UPF0118 [Pirellula staleyi DSM 6068]
          Length = 542

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 115/239 (48%), Gaps = 14/239 (5%)

Query: 112 DIPGGMWASELWTKHLSHP--QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
           D  GG + +  W   L++P  + ++ L ++ L T     +    S    I       ++ 
Sbjct: 210 DFLGGPYRA--WLTELANPTDEQIEDLRQSTLLTASSPLVS-LGSDTVAIVGKLAFGVVI 266

Query: 170 MIIALFFFYRDG---FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
           M+ ALFF + +G    + + +L  L E        +  R+   V+ +T L     A+ +G
Sbjct: 267 MVAALFFLFAEGGKMLNAAIRLSPLEERYVRELVGEFDRVCRAVVAATLLS----AVAQG 322

Query: 227 LVLGSAYWLAGVPSHVAL-GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLW 284
           ++ G  ++ AGV   VAL  V+T ++A++P  GA   +   SIYL   G+   A  L ++
Sbjct: 323 ILAGIGFYFAGVQHAVALLMVLTCVLAIVPFTGAAAVWIPTSIYLYYDGHTTAAILLAIY 382

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           GA  +   D  ++P ++ G   L  L     ++GG++ +G +G+ +GP+++  +  + K
Sbjct: 383 GAAIVSTADNIIKPLVLHGQSNLHPLLALLSVIGGIQALGPIGILVGPMVVVFLQTLLK 441


>gi|15596822|ref|NP_250316.1| hypothetical protein PA1625 [Pseudomonas aeruginosa PAO1]
 gi|9947592|gb|AAG05014.1|AE004590_5 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
          Length = 355

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 146/322 (45%), Gaps = 16/322 (4%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
            SL+ L  F++ +  A ++ F SWP+            +  A + T+  + L  +PL++L
Sbjct: 19  ASLWVLAPFWSALFWAAVLAFASWPLMRMLTRLLGGRESLAAGLLTLGWIVLVALPLIWL 78

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVP-RWLSDIPGGMWASEL---WTKHLSHPQSLKILS 137
            +     ++ L+  +      G+P P  W++ +P  +    L   W        +   + 
Sbjct: 79  GFGLADNVRSLMELLKNLQVEGLPPPPSWMAGVP--LIGDRLIGWWDSIDQQGVAFFYVL 136

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
           + ++   G   + R A   G I     L ++  +I +FFFYRDG  +   +    E L  
Sbjct: 137 KPYVGEVGNWLLARSAKIGGGI-----LELVLSLILIFFFYRDGPRLESIVHRALERLIG 191

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT--AIMAMIP 255
              +    +V   ++    G+   A  + L+    + +AGVP  + LG++T    + M+P
Sbjct: 192 NRAEHYRDLVAGTVQRVVNGVIGTAAAQALLAWIGFMIAGVPGAMLLGLLTFACSLLMVP 251

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P+ +   + +L  KG+  +   L LWG   +  VD  L+P+L+     LP +    G
Sbjct: 252 ---PLVWGPATAWLFFKGDYGHGVFLGLWGFFIISGVDNILKPYLISRGGNLPLVVVLLG 308

Query: 316 LVGGVRTMGLLGLFIGPVLMAL 337
           + GG+   G +GLF+GP+L+A+
Sbjct: 309 VFGGLLAFGFMGLFLGPILLAV 330


>gi|288940576|ref|YP_003442816.1| hypothetical protein Alvin_0838 [Allochromatium vinosum DSM 180]
 gi|288895948|gb|ADC61784.1| protein of unknown function UPF0118 [Allochromatium vinosum DSM
           180]
          Length = 401

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 95/178 (53%), Gaps = 8/178 (4%)

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK---VIRSTFLGMTIIAIGEG 226
           ++ +LFF   DG     +L     +  P + +    ++ K   V R+T  G  +I + +G
Sbjct: 165 LLYSLFFLLMDGPKFILKL----LYYLPLHTRDERLMLDKFTSVTRATLKGSFLIGVLQG 220

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWG 285
            + G A+ +AG+ + V  G + A++++IP  GA + +    I L+ +G +  A  L L+ 
Sbjct: 221 GLAGIAFAVAGIDNAVFWGTLMALLSIIPNVGAALVWIPAVIILIAQGAVLTAILLALFC 280

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            + +  +D  LRP LVG   ++  L  FF  +GG+   GL GLFIGPV+ +L+  IW+
Sbjct: 281 GLIVGSLDNVLRPILVGKDTRMHELMIFFSTLGGLLMFGLPGLFIGPVIASLLISIWE 338


>gi|134292899|ref|YP_001116635.1| hypothetical protein Bcep1808_4190 [Burkholderia vietnamiensis G4]
 gi|134136056|gb|ABO57170.1| protein of unknown function UPF0118 [Burkholderia vietnamiensis G4]
          Length = 350

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 103/225 (45%), Gaps = 24/225 (10%)

Query: 143 TNGIDFIPRFAS----RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ------LDSLG 192
           T+G   I +FA+      G     + +S   M+  +FF  RDG  I ++      LD   
Sbjct: 137 TDGAAQISQFAATQALSIGQNTFQFVVSFGVMLYMVFFLLRDGGEIGRRVRRALPLDEEH 196

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           ++L  A +         V+R+T  G   +A+ +G + G  +W+ G+   V  G + A ++
Sbjct: 197 KNLLLAKFTT-------VVRATVKGNIAVALVQGALGGLIFWILGIEGVVLWGALMAFLS 249

Query: 253 MIPG-GAPISFTAVSIYLLIKGNIFNATCL--FLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++P  GA + +   ++Y L  G ++    L  F  G I L  VD  LRP LVG   K+P 
Sbjct: 250 LLPAIGASLVWVPAALYFLATGAVWKCVILVGFCVGVIGL--VDNLLRPILVGKDTKMPD 307

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                  +GG+   G+ G  IGP++ AL    W   I A  E  E
Sbjct: 308 WVVLISTLGGMALFGINGFVIGPLVAALFMASW--DIYARAEQGE 350


>gi|330821282|ref|YP_004350144.1| hypothetical protein bgla_2g21980 [Burkholderia gladioli BSR3]
 gi|327373277|gb|AEA64632.1| hypothetical protein bgla_2g21980 [Burkholderia gladioli BSR3]
          Length = 350

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 139/328 (42%), Gaps = 29/328 (8%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           FF  +    I+     P+   F +   +     A++    ++ + I+PL F+        
Sbjct: 29  FFGAIFWGTILAILFQPVQRWFAAHFGKRRNLAALVTLSLIVLIVILPLSFV-------A 81

Query: 90  KELVSKVVLANQHGIPVPR-----WLSDIPGGMWASELWTKHLSHPQSLKILSETFLK-T 143
             LV ++  A Q  I   +     WL +I   + AS    + + H   L  ++    K T
Sbjct: 82  GTLVQEIAFAYQQ-IKAAQPNMTGWLQEIVHALPAS---LQRILHSYGLTDIAGIQKKLT 137

Query: 144 NGIDFIPRF----ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
           +G   I +F    A   G     + +S   M+  +FF  RDG  I +++        P  
Sbjct: 138 DGAAAISQFVAAQAFSIGQNTFQFIVSFGIMLYLVFFLLRDGGEIGRRV----RRALPLD 193

Query: 200 WKKISRIVPK---VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                 ++ K   V+R+T  G   +AI +G + G  +W+ G+   +  G + A ++++P 
Sbjct: 194 EDHKQLLLTKFTTVVRATVKGNIAVAIVQGALGGLIFWILGIEGVLLWGALMAFLSLLPA 253

Query: 257 -GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            GA + +   ++Y  + G I+    L  +    + +VD  LRP LVG   K+P       
Sbjct: 254 IGAGLVWAPAAVYFAVTGQIWKCVILVAFCVGVIGLVDNLLRPILVGKDTKMPDWVVLIS 313

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            +GG+   G+ G  IGP++ AL    W 
Sbjct: 314 TLGGMALFGINGFVIGPLVAALFMASWD 341


>gi|254234725|ref|ZP_04928048.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126166656|gb|EAZ52167.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
          Length = 355

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 146/322 (45%), Gaps = 16/322 (4%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
            SL+ L  F++ +  A ++ F SWP+            +  A + T+  + L  +PL++L
Sbjct: 19  ASLWVLAPFWSALFWAAVLAFASWPLMRMLTRLLGGRESLAAGLLTLGWIVLVALPLIWL 78

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVP-RWLSDIPGGMWASEL---WTKHLSHPQSLKILS 137
            +     ++ L+  +      G+P P  W++ +P  +    L   W        +   + 
Sbjct: 79  GFGLADNVRSLMELLKNLQVEGLPPPPSWMAGVP--LIGDRLIGWWDSIDQQGVAFFYVL 136

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
           + ++   G   + R A   G I     L ++  +I +FFFYRDG  +   +    E L  
Sbjct: 137 KPYVGEVGNWLLARSAKIGGGI-----LELVLSLILIFFFYRDGPRLESIVHRALERLIG 191

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT--AIMAMIP 255
              +    +V   ++    G+   A  + L+    + +AGVP  + LG++T    + M+P
Sbjct: 192 NRAEHYRDLVAGTVQRVVNGVIGTAAAQALLAWIGFMIAGVPGAMLLGLLTFACSLLMVP 251

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P+ +   + +L  KG+  +   L LWG   +  VD  L+P+L+     LP +    G
Sbjct: 252 ---PLVWGPTTAWLFFKGDYGHGVFLGLWGFFIISGVDNILKPYLISRGGNLPLVVVLLG 308

Query: 316 LVGGVRTMGLLGLFIGPVLMAL 337
           + GG+   G +GLF+GP+L+A+
Sbjct: 309 VFGGLLAFGFMGLFLGPILLAV 330


>gi|262401678|ref|ZP_06078244.1| predicted permease [Vibrio sp. RC586]
 gi|262352095|gb|EEZ01225.1| predicted permease [Vibrio sp. RC586]
          Length = 361

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 157/361 (43%), Gaps = 49/361 (13%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           L   + ++ +   ++ A II    +PI++    K        A ++ V +  + ++PLLF
Sbjct: 23  LACYWLVEPYINSIVMAFIISLLMFPIHAWLDKKLPSHHNLSAFLSCVVLTVIVVIPLLF 82

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS--- 137
           +F   +++     S+ + A         W++   GG+       + L+HP  +K LS   
Sbjct: 83  IFG-AIVQQGSKFSQNLYA---------WVTQ--GGI------QEVLNHPWVVKGLSLAN 124

Query: 138 -----ETFLKTNGIDFIPRFASRFGMIFLD-----------YCLSIIFMIIALFFFYRDG 181
                E          I +FA+ FG   +            + ++   M+  LFF  RD 
Sbjct: 125 HYLPFEEISPQQIAQRIGQFATTFGTNLVSISAKILGDATSFVMNFFLMLFVLFFLLRD- 183

Query: 182 FSISQQLDSLGEHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                ++ S   H+ P    +  R+   +  V +S  +G  + AI +GL  G   WLAG 
Sbjct: 184 ---HDKIISAIRHILPLSRSQEDRLLNEIENVSKSAVMGSFLTAIAQGLAGGIGMWLAGF 240

Query: 239 PSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P  +  G +    + IP  G  + +   ++YL + G    A  L +W    +  +D  LR
Sbjct: 241 PG-LFWGTMMGFASFIPVVGTALIWIPATLYLFLIGETSWAIFLAIWSIAVVGSIDNLLR 299

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV---IWKESIMAIKENKE 354
           PFL+ G   +  L  FF L+GG++  GL+GL  GP++ A+  V   I++E   +  + ++
Sbjct: 300 PFLMQGSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQQD 359

Query: 355 K 355
            
Sbjct: 360 N 360


>gi|116049570|ref|YP_791626.1| hypothetical protein PA14_43510 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296390001|ref|ZP_06879476.1| hypothetical protein PaerPAb_17706 [Pseudomonas aeruginosa PAb1]
 gi|313106640|ref|ZP_07792863.1| putative permease [Pseudomonas aeruginosa 39016]
 gi|115584791|gb|ABJ10806.1| putative permease [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310879365|gb|EFQ37959.1| putative permease [Pseudomonas aeruginosa 39016]
          Length = 355

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 146/322 (45%), Gaps = 16/322 (4%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
            SL+ L  F++ +  A ++ F SWP+            +  A + T+  + L  +PL++L
Sbjct: 19  ASLWVLAPFWSALFWAAVLAFASWPLMRMLTRLLGGRESLAAGLLTLGWIVLVALPLIWL 78

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVP-RWLSDIPGGMWASEL---WTKHLSHPQSLKILS 137
            +     ++ L+  +      G+P P  W++ +P  +    L   W        +   + 
Sbjct: 79  GFGLADNVRSLMELLKNLQVEGLPPPPSWMAGVP--LIGDRLIGWWNSIDQQGVAFFYVL 136

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
           + ++   G   + R A   G I     L ++  +I +FFFYRDG  +   +    E L  
Sbjct: 137 KPYVGEVGNWLLARSAKIGGGI-----LELVLSLILIFFFYRDGPRLESIVHRALERLIG 191

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT--AIMAMIP 255
              +    +V   ++    G+   A  + L+    + +AGVP  + LG++T    + M+P
Sbjct: 192 NRAEHYRDLVAGTVQRVVNGVIGTAAAQALLAWIGFTIAGVPGAMLLGLLTFACSLLMVP 251

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P+ +   + +L  KG+  +   L LWG   +  VD  L+P+L+     LP +    G
Sbjct: 252 ---PLVWGPATAWLFFKGDYGHGVFLGLWGFFIISGVDNILKPYLISRGGNLPLVVVLLG 308

Query: 316 LVGGVRTMGLLGLFIGPVLMAL 337
           + GG+   G +GLF+GP+L+A+
Sbjct: 309 VFGGLLAFGFMGLFLGPILLAV 330


>gi|172062740|ref|YP_001810391.1| hypothetical protein BamMC406_3708 [Burkholderia ambifaria MC40-6]
 gi|171995257|gb|ACB66175.1| protein of unknown function UPF0118 [Burkholderia ambifaria MC40-6]
          Length = 355

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 102/223 (45%), Gaps = 20/223 (8%)

Query: 143 TNGIDFIPRFAS----RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ------LDSLG 192
           T+G   I +FA+      G     + +S   M+  +FF  RDG  I ++      LD   
Sbjct: 142 TDGAAQISQFAATQALSIGQNTFQFVVSFGVMLYMVFFLLRDGGEIGRRVRRSIPLDEEH 201

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           ++L  A +         V+R+T  G   +A+ +G + G  +W+ G+   V  G + A ++
Sbjct: 202 KNLLLAKFTT-------VVRATVKGNIAVALVQGALGGLIFWILGIEGVVLWGALMAFLS 254

Query: 253 MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++P  GA + +   ++Y L  G I+    L  +    + +VD  LRP LVG   K+P   
Sbjct: 255 LLPAIGASLVWIPAALYFLAIGAIWKCVILVAFCVGVIGLVDNLLRPILVGKDTKMPDWV 314

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                +GG+   G+ G  IGP++ AL    W   I A  E  E
Sbjct: 315 VLISTLGGMALFGINGFVIGPLVAALFMASW--DIYARSEQGE 355


>gi|170701167|ref|ZP_02892139.1| protein of unknown function UPF0118 [Burkholderia ambifaria
           IOP40-10]
 gi|171317430|ref|ZP_02906622.1| protein of unknown function UPF0118 [Burkholderia ambifaria MEX-5]
 gi|170133910|gb|EDT02266.1| protein of unknown function UPF0118 [Burkholderia ambifaria
           IOP40-10]
 gi|171097385|gb|EDT42228.1| protein of unknown function UPF0118 [Burkholderia ambifaria MEX-5]
          Length = 350

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 102/223 (45%), Gaps = 20/223 (8%)

Query: 143 TNGIDFIPRFAS----RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ------LDSLG 192
           T+G   I +FA+      G     + +S   M+  +FF  RDG  I ++      LD   
Sbjct: 137 TDGAAQISQFAATQALSIGQNTFQFVVSFGVMLYMVFFLLRDGGEIGRRVRRSIPLDEEH 196

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           ++L  A +         V+R+T  G   +A+ +G + G  +W+ G+   V  G + A ++
Sbjct: 197 KNLLLAKFTT-------VVRATVKGNIAVALVQGALGGLIFWILGIEGVVLWGALMAFLS 249

Query: 253 MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++P  GA + +   ++Y L  G I+    L  +    + +VD  LRP LVG   K+P   
Sbjct: 250 LLPAIGASLVWIPAALYFLAIGAIWKCVILVAFCVGVIGLVDNLLRPILVGKDTKMPDWV 309

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                +GG+   G+ G  IGP++ AL    W   I A  E  E
Sbjct: 310 VLISTLGGMALFGINGFVIGPLVAALFMASW--DIYARSEQGE 350


>gi|107101057|ref|ZP_01364975.1| hypothetical protein PaerPA_01002087 [Pseudomonas aeruginosa PACS2]
 gi|218892418|ref|YP_002441285.1| putative permease [Pseudomonas aeruginosa LESB58]
 gi|254239971|ref|ZP_04933293.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126193349|gb|EAZ57412.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218772644|emb|CAW28429.1| putative permease [Pseudomonas aeruginosa LESB58]
          Length = 355

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 146/322 (45%), Gaps = 16/322 (4%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
            SL+ L  F++ +  A ++ F SWP+            +  A + T+  + L  +PL++L
Sbjct: 19  ASLWVLAPFWSALFWAAVLAFASWPLMRMLTRLLGGRESLAAGLLTLGWIVLVALPLIWL 78

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVP-RWLSDIPGGMWASEL---WTKHLSHPQSLKILS 137
            +     ++ L+  +      G+P P  W++ +P  +    L   W        +   + 
Sbjct: 79  GFGLADNVRSLMELLKNLQVEGLPPPPSWMAGVP--LIGDRLIGWWDSIDQQGVAFFYVL 136

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
           + ++   G   + R A   G I     L ++  +I +FFFYRDG  +   +    E L  
Sbjct: 137 KPYVGEVGNWLLARSAKIGGGI-----LELVLSLILIFFFYRDGPRLESIVHRALERLIG 191

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT--AIMAMIP 255
              +    +V   ++    G+   A  + L+    + +AGVP  + LG++T    + M+P
Sbjct: 192 NRAEHYRDLVAGTVQRVVNGVIGTAAAQALLAWIGFMIAGVPGAMLLGLLTFACSLLMVP 251

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P+ +   + +L  KG+  +   L LWG   +  VD  L+P+L+     LP +    G
Sbjct: 252 ---PLVWGPATAWLFFKGDYGHGVFLGLWGFFIISGVDNILKPYLISRGGNLPLVVVLLG 308

Query: 316 LVGGVRTMGLLGLFIGPVLMAL 337
           + GG+   G +GLF+GP+L+A+
Sbjct: 309 VFGGLLAFGFMGLFLGPILLAV 330


>gi|197335578|ref|YP_002156935.1| hypothetical membrane spanning protein [Vibrio fischeri MJ11]
 gi|197317068|gb|ACH66515.1| hypothetical membrane spanning protein [Vibrio fischeri MJ11]
          Length = 361

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 153/358 (42%), Gaps = 50/358 (13%)

Query: 13  RWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
            W+++  +L + Y     ++ +  P++ A I+     P+++    +   S    A+++ +
Sbjct: 11  HWVLIAALLAAGYACFLLIEPYLNPIILAFIMSLLFAPLHNKISDRLPNSPNSAAILSCM 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           ++  +  +PL F+F   +++     SK             W+ D  GG+           
Sbjct: 71  ALTFIIAIPLFFVFI-AIVQQGATFSK---------DAYHWVID--GGI------QTLFQ 112

Query: 129 HPQSLKILS--ETFLKTNGID------FIPRFASRFGMIFLDYCLSIIFMIIALFF---- 176
           HP   K LS    +L  + ID       + + AS+ G   +     I+  +  +      
Sbjct: 113 HPFVAKALSFINKYLPFDAIDPAEVTQKVAQLASQIGTRIVGMSAQIVGDVTNVLMNFFL 172

Query: 177 -------FYRDGFSISQQLDSLGEHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEG 226
                    RD      ++ S   H+ P    +  R+   + +V +S  LG  + AI +G
Sbjct: 173 MLFVLFFLLRD----QDKIISAFRHVLPLSRSQEDRLLDEIEQVSKSAVLGSFLTAIAQG 228

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           +  G A WLAG P  +  G +    + IP  G  + +   +IYLL+      A  L  WG
Sbjct: 229 IAGGFAMWLAGFPG-LFWGTMMGFASFIPVVGTALIWVPATIYLLLTNQWEWAIFLTAWG 287

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            + +  +D  +RP L+ G   +  L  FF L+GG++  GL+GL  GP++ AL  V++ 
Sbjct: 288 VLVVGSIDNIVRPLLMQGNSGMNTLLIFFSLLGGIQLYGLIGLIYGPIIFALTLVLFN 345


>gi|330502637|ref|YP_004379506.1| hypothetical protein MDS_1723 [Pseudomonas mendocina NK-01]
 gi|328916923|gb|AEB57754.1| hypothetical protein MDS_1723 [Pseudomonas mendocina NK-01]
          Length = 353

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 159/346 (45%), Gaps = 12/346 (3%)

Query: 5   MLNPQGIMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           M +P    +  I+ ++LV++ F   L  F+  V  A+++     P+    I +    S  
Sbjct: 1   MQSPTFEQKAFILLLVLVTIAFFWILLPFYGAVFWAMVLAVVFAPLQERLIRRTGGRSNL 60

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWAS 120
            A++ ++  + + I+P++F+    + E   L  K+       G  V  ++  +P  +   
Sbjct: 61  AALLTSIICLLVAILPVIFITSSVVAEGASLYQKLESGELDIGTYVTSFIQMLPPSI-QE 119

Query: 121 ELWTKHLSHPQSLKILSETFLK--TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
           +L    +S    L+   E   K    G  ++       G    ++ +    M+  LFF  
Sbjct: 120 QLDRLGMSDLDGLR---EQVSKGAMAGSQYLATKVFAIGQGTFEFFIGFFVMLYLLFFLL 176

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           RDG  +  ++ +    L     +++     +V+R+T  G  ++A  +G + G  +W  G+
Sbjct: 177 RDGKELVHKIRTT-IPLADTTKRRLQIKFTRVVRATVKGNVVVAAVQGALGGFIFWALGI 235

Query: 239 PSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
            S +  GV+ A ++++P  GA I +  V++YL++ G++     L  +G + + +VD  LR
Sbjct: 236 YSPLLWGVLMAFLSLLPAAGAGIVWAPVAVYLMLSGSLVQGIILTAFGVLVIGLVDNILR 295

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           P LVG   ++P        +GG+  +GL G  IGP++ AL    W 
Sbjct: 296 PILVGKDTRMPDYLILISTLGGLSLLGLNGFVIGPLVAALFVASWN 341


>gi|317153667|ref|YP_004121715.1| hypothetical protein Daes_1960 [Desulfovibrio aespoeensis Aspo-2]
 gi|316943918|gb|ADU62969.1| protein of unknown function UPF0118 [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 366

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 99/196 (50%), Gaps = 8/196 (4%)

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
           L  + M+  LF+F RDG  +   +  L   L P     I   + +V R   +G  ++A+ 
Sbjct: 174 LHFLLMVFILFYFMRDGAKMVAYVKLL-SPLRPRQEDYIIDSLRRVARGVLMGCLLVAVL 232

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLF 282
           +GL  G+   + G+P+    G + A+ ++IP  G   +   AV  +LL+ G    AT L 
Sbjct: 233 QGLAGGAGLAVVGIPAFF-WGAMMALASLIPVLGTGLVWVPAVG-FLLLSGQWKEATLLA 290

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           LW  I +  +D  LRP  +    ++     F  ++GGV T G+LG+F GP++++L+ V+ 
Sbjct: 291 LWCGIVVVGIDTILRPIFMREASRVSTFYIFLAILGGVYTFGMLGIFYGPLILSLVMVML 350

Query: 343 KESIMAIKENKEKISS 358
           +   + ++E  E +  
Sbjct: 351 Q---IYVEEYAEDLKD 363


>gi|118602640|ref|YP_903855.1| hypothetical protein Rmag_0639 [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567579|gb|ABL02384.1| protein of unknown function UPF0118 [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 360

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 160/353 (45%), Gaps = 52/353 (14%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEE-----SSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F P +SAL   F S  I  +  SK E+     SS   A++ T+ V  + I+PL ++    
Sbjct: 29  FTPFISAL---FLSLMIAITTFSKYEQLQNRFSSNNSALLTTLLVTIVLILPLGYILLIS 85

Query: 86  MLEMKELVSKV----------VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            LE+  L+  +           + NQ    +P  LSD      +S L     +    +K 
Sbjct: 86  TLEISTLIQTINHDLNFDKITQILNQTVTKLP--LSDFIKNTLSSTLNNNLEALFIGVKD 143

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG--- 192
            S   LK+     I   +S F        L +I +I  L++FY DG  I  ++ SL    
Sbjct: 144 FSIVILKS-----IVSLSSHF-------ILFLIIVIFTLYYFYIDGKKIVTRIKSLSPLE 191

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            HL      +   +   ++ S FL    IA+ +G++      + G+P+ +  G+  A+ +
Sbjct: 192 AHLNNILLNQFKNLSITLVGSVFL----IALLQGMIFSITIIIIGLPA-LYFGIAMAMAS 246

Query: 253 MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLV-------GG 303
            IP  G  I +  +S+YL  +G I +A  + L GA+ + FIVD   RP ++        G
Sbjct: 247 FIPLLGGLIIWLPLSLYLYAQGQITDALIVALSGAVVIGFIVDNLARPSIIKFLSKKSNG 306

Query: 304 PIKLPF-LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
              L   L T    + G+   G+LGLFIGP++ A+   I+   I +I+ NK++
Sbjct: 307 TNTLDHTLITVLSTLSGIIQFGILGLFIGPIIAAMAISIFD--IYSIRYNKDR 357


>gi|90414156|ref|ZP_01222138.1| hypothetical membrane protein [Photobacterium profundum 3TCK]
 gi|90324828|gb|EAS41361.1| hypothetical membrane protein [Photobacterium profundum 3TCK]
          Length = 368

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 161/342 (47%), Gaps = 30/342 (8%)

Query: 9   QGIMRWMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFIS----KKEESSTFLA 63
           +  +R  ++FI+L   Y  +K F  PVL   II     P+     +    K+  S+T +A
Sbjct: 21  ESAIRVGLLFILLAWSYGIVKPFLIPVLWGAIIAVALMPLTVKLENMLKGKRGLSATVIA 80

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP-RWLSDIPG-GMWASE 121
           +I     + +  VP + +F   M+E  E ++  + +    IP P   +++IP  G    +
Sbjct: 81  LIG----ILILTVPFV-MFSISMVESVEGITSTISSGTLKIPGPTERIANIPIIGQQIFD 135

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGM---IFLDYCLSIIFMIIALFF-- 176
           +W    ++      L + F K     F+P+  S   M   +  +  +SI+  +I+L    
Sbjct: 136 VWQLFSTN------LEKAFTK-----FLPQLTSGLAMMASVVGNSIVSILMFVISLLISA 184

Query: 177 -FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
            F  +  SIS+ +++L   +  A+ ++ + +    IRS  LG+  +A  +  ++G   + 
Sbjct: 185 AFMANATSISKSVNTLSVRIAGAHGEEWATLCTATIRSVLLGVVGVACIQAFLVGIGVFA 244

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
            G+P+   + ++  + A+    A +    V  Y+    +   AT   +W  +   + D  
Sbjct: 245 IGLPTAGLITILVLVFAIAQLPALLVVAPVIAYVYSIHDSTTATIFAVWTLLA-GLSDNF 303

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           L+P L+G  + +P      G +GG+ + G+LGLFIGPV++A+
Sbjct: 304 LKPLLMGRGLDIPMPVILLGAIGGMVSSGILGLFIGPVILAI 345


>gi|146306684|ref|YP_001187149.1| hypothetical protein Pmen_1653 [Pseudomonas mendocina ymp]
 gi|145574885|gb|ABP84417.1| protein of unknown function UPF0118 [Pseudomonas mendocina ymp]
          Length = 362

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 161/358 (44%), Gaps = 34/358 (9%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           TM +P    +  I+ + LV++ F   L  F+  V  A+++     P+      +      
Sbjct: 8   TMPSPSVEHKAFILLLALVTIAFFWILLPFYGAVFWAIVLAVVFAPLQQRLARRFGGRGN 67

Query: 61  FLAVIATVSVMCLFIVPLLFLF---------YYGMLEMKELVSKVVLANQHGIPVPRWLS 111
             A++  +  + + I+P++F+           Y  LE  EL     + N   + +P ++ 
Sbjct: 68  LSALLTLIVCLLVAILPVIFVISAVVAEGTSLYQRLESGELDIGAYVTNTIEM-LPPFMQ 126

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETFLK--TNGIDFIPRFASRFGMIFLDYCLSIIF 169
           D             H     +L+ L E   K    G  ++       G +  ++ +    
Sbjct: 127 D-----------QLHRFGMSNLEGLREQISKGAMAGSQYLATKVFVIGQMTFEFLIGFFI 175

Query: 170 MIIALFFFYRDGFSISQQLDS---LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
           M+  LFF  RDG ++++ + +   LG+        K +R+V    R+T  G  ++A  +G
Sbjct: 176 MLYLLFFLLRDGRTLARDVRTAVPLGDTTKRRLQIKFTRVV----RATVKGNIVVAAVQG 231

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWG 285
            + G   W+ G+PS +  G + A ++++P  GA + +  ++ YLL+ G+++    L ++G
Sbjct: 232 ALGGLILWVLGLPSPLLWGALMAFLSLLPAVGAGLVWAPMAAYLLLSGSVWQGVTLSVFG 291

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            + + +VD  LRP LVG   ++P        +GG+  +GL G  IGP++ AL    W 
Sbjct: 292 VLVISLVDNILRPILVGKDTRMPDYLILTSTLGGLALLGLNGFVIGPLVAALFVASWN 349


>gi|238025001|ref|YP_002909233.1| hypothetical protein bglu_2g16580 [Burkholderia glumae BGR1]
 gi|237879666|gb|ACR31998.1| Hypothetical protein bglu_2g16580 [Burkholderia glumae BGR1]
          Length = 364

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/353 (21%), Positives = 153/353 (43%), Gaps = 25/353 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E+  + Q   ++++  + +   + L  FF  +    I+     P+     +   +     
Sbjct: 15  ESAKDHQKFFQFLLTVVTIGFCWILIPFFGAIFWGTILAILFQPVQRWLAAHFGKRRNLA 74

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A++   +++ + I+PL F+    + E+  +  +V  +  +   +  +L  +   +  S  
Sbjct: 75  ALVTLSAIVLIVILPLTFVAATLVQEIAYVYQQVKTSQPN---MTLYLQQVVHALPTS-- 129

Query: 123 WTKHLSHPQSLKILSETFLK-TNGIDFIPRF----ASRFGMIFLDYCLSIIFMIIALFFF 177
             + + H   L  ++    K T+G   I +F    A   G     + +S   M+  +FF 
Sbjct: 130 -LQRVLHSYGLADIAGIQKKLTDGAAAISQFVATQAFSIGQNTFQFVVSFGVMLYLVFFL 188

Query: 178 YRDGFSISQQ------LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
            RDG  I ++      LD   +HL  + +         V+R+T  G   +A+ +G + G 
Sbjct: 189 LRDGGEIGRRVRRALPLDEDHKHLLLSKFTT-------VVRATVKGNIAVALVQGALGGV 241

Query: 232 AYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
            +W+ G+   +  G + A ++++P  GA + +   ++Y  + G I+    L ++    + 
Sbjct: 242 IFWILGIEGALLWGSLMAFLSLLPAIGAGLVWAPAAVYFAVTGQIWKCVILVVFCVGVIG 301

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +VD  LRP LVG   K+P        +GG+   G+ G  IGP++ AL    W 
Sbjct: 302 LVDNLLRPILVGKDTKMPDWVVLISTLGGMALFGINGFVIGPLVAALFMASWD 354


>gi|330503226|ref|YP_004380095.1| hypothetical protein MDS_2312 [Pseudomonas mendocina NK-01]
 gi|328917512|gb|AEB58343.1| hypothetical protein MDS_2312 [Pseudomonas mendocina NK-01]
          Length = 361

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 144/317 (45%), Gaps = 12/317 (3%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + L  F++ +  A ++ F SWP+            +  A I T   + +  VPL++L + 
Sbjct: 22  WVLAPFWSALFWAAVLAFASWPLMRLLTQLLNGRLSLAAGILTGVWVVMVAVPLVWLGFN 81

Query: 85  GMLEMKELVSKVVLANQHGIPVP-RWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLK 142
               +K+  + V      G+P P  WL  IP  G    ELW        +       +L 
Sbjct: 82  LADHIKDANALVRDLQVEGLPPPPSWLGSIPLVGDRLVELWRTIDQQGAAFFDTLRPYLG 141

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
             G   + R +++ G   ++  LS++ +    FFFYRDG  ++  + SL E L       
Sbjct: 142 QVGNWLVAR-SAKIGAGMVELALSLVLV----FFFYRDGPRLAVFVHSLLERLIGERADH 196

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA--MIPGGAPI 260
              +V   ++    G+   A  + ++    + +AGVP  + LG++T   +  MIP   P+
Sbjct: 197 YLELVAGTVQRVVNGVIGTAAAQAVLAYIGFVIAGVPGALVLGLLTFAFSFIMIP---PL 253

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +     +L+ +G I  A  L +WG   +  VD  L+P+L+     LP +    G+ GG+
Sbjct: 254 IWGPAVAWLVWQGEIGMAIFLGVWGFFIISGVDNILKPYLISRGGNLPLVVVLLGVFGGI 313

Query: 321 RTMGLLGLFIGPVLMAL 337
              G +GLF+GP L+A+
Sbjct: 314 LAFGFMGLFLGPTLLAV 330


>gi|288561240|ref|YP_003424726.1| hypothetical protein mru_1984 [Methanobrevibacter ruminantium M1]
 gi|288543950|gb|ADC47834.1| hypothetical protein mru_1984 [Methanobrevibacter ruminantium M1]
          Length = 361

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 102/202 (50%), Gaps = 7/202 (3%)

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
           F +  + +  +I ++++F RDG  I + +     +   A++ +    +  V++S F G  
Sbjct: 118 FSNVLIQLFVLICSIYYFTRDGDLIWENIFVFIPNEHKAFFDRTFYEIANVLKSIFYGHF 177

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIY-LLIKGNIFN 277
           + A+  G++ G  Y+L G    + LG+IT I  +IP   P I + A++IY + + G+I  
Sbjct: 178 LTAVIIGVMGGVGYYLLGYKFALFLGIITGIFQLIPIFGPWIVYWALAIYAIFVAGDIVQ 237

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           A    LWG + L + D  +RP L      +P L    G + G    G++G  +GP+++ +
Sbjct: 238 AVLTVLWGFV-LSLSDMYIRPVLASNYADMPSLILLVGFMAGPYVFGIVGFILGPLILGV 296

Query: 338 IAVIWKESIMAIKENKEKISSN 359
              + K    ++KE  EK + N
Sbjct: 297 CYAVIK----SLKEELEKDNWN 314


>gi|209695990|ref|YP_002263920.1| membrane protein [Aliivibrio salmonicida LFI1238]
 gi|208009943|emb|CAQ80257.1| membrane protein [Aliivibrio salmonicida LFI1238]
          Length = 361

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 158/358 (44%), Gaps = 50/358 (13%)

Query: 13  RWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
            W+++  +LV+ Y     ++ +  P++ A I+     P+++    K  +S    A+++  
Sbjct: 11  HWVLVTALLVASYACFLLIEPYLNPIILAFIMSLLFAPLHNKISEKLPKSPNSAAILSCT 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           ++  +  +PL F+F   +++     SK             W+++  GG+           
Sbjct: 71  ALTFIIAIPLFFVFV-AIVQQGATFSK---------DAYHWITE--GGI------QTLFQ 112

Query: 129 HPQSLKILS--ETFLKTNGID------FIPRFASRFGMIFLDYCLSII-----------F 169
           HP   +IL+     L  + ID       + + AS+ G   +     I+            
Sbjct: 113 HPIVSQILAFINKHLPFDAIDPNEITQKVAQLASQVGTKVVGVSAQILGDATNVLVNFFL 172

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEG 226
           M+  LFF  RD      ++ S   H+ P    +  R+   + +V +S  LG  + AI +G
Sbjct: 173 MLFVLFFLLRD----QDKIISAFRHVLPLSRSQEDRLLDEIEEVSKSAILGSFLTAIAQG 228

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           L  G A WLAG P  +  G +    + IP  G  + +   +IYLL+      A  L +WG
Sbjct: 229 LAGGFAMWLAGFPG-LFWGTMMGFASFIPVVGTALIWIPATIYLLLTNQWEWAIFLTVWG 287

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            + +  +D  +RP L+ G   +  L  FF L+GG+   GL+GL  GP++ AL  V++ 
Sbjct: 288 VLVVGSIDNIVRPLLMQGNSGMNTLLIFFSLLGGIHLYGLIGLIYGPLIFALTFVLFN 345


>gi|261212265|ref|ZP_05926551.1| predicted permease [Vibrio sp. RC341]
 gi|260838873|gb|EEX65524.1| predicted permease [Vibrio sp. RC341]
          Length = 361

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 151/346 (43%), Gaps = 19/346 (5%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           L   + ++ +   ++ A II    +PI+     K        A ++ V +  + ++PLLF
Sbjct: 23  LACYWLVEPYINSIVMAFIISLLMFPIHDWLDRKLPSHHNISAFLSCVVLTVIVVIPLLF 82

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS----HPQSLKIL 136
           +F   + +  +    +     HG  +   LS  P  + A  L  ++L      PQ +   
Sbjct: 83  IFGAIVQQGSKFSQNLYSWVTHG-GIQELLSH-PWVVKALGLANQYLPFEEISPQQIAQR 140

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
              F  T G + +   A   G     + ++   M+  LFF  RD      ++ S   H+ 
Sbjct: 141 VAQFATTFGSNLVSISAKILGDA-TSFVMNFFLMLFVLFFLLRD----HDKIISAIRHIL 195

Query: 197 PAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           P    +  R+   +  V +S  +G  + AI +G   G   WLAG P  +  G +    + 
Sbjct: 196 PLSRSQEDRLLNEIENVSKSAVMGSFLTAIAQGFAGGIGMWLAGFPG-LFWGTMMGFASF 254

Query: 254 IPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP  G  + +   ++YL + G    A  L +W    +  +D  LRPFL+ G   +  L  
Sbjct: 255 IPVVGTALIWIPATLYLFLIGETTWAFFLAIWSIAVVGSIDNLLRPFLMQGSAGMNTLMI 314

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAV---IWKESIMAIKENKEK 355
           FF L+GG++  GL+GL  GP++ A+  V   I++E   +  + +++
Sbjct: 315 FFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQQDQ 360


>gi|90413138|ref|ZP_01221134.1| putative permease [Photobacterium profundum 3TCK]
 gi|90325829|gb|EAS42281.1| putative permease [Photobacterium profundum 3TCK]
          Length = 361

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 162/358 (45%), Gaps = 50/358 (13%)

Query: 13  RWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
            WM++  + +++Y     ++ +  P++ A II    +P++    SK        A+++ +
Sbjct: 11  HWMLIVALGIAVYASYRLIEPYIGPIVMAFIISLLYYPLHIRIESKIPSKPNSAAILSCI 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  + ++PLL +F         +V +    ++       W S   GG  A EL    L+
Sbjct: 71  LLTFIIVIPLLIVF-------SSIVHQGTTFSKDSY---TWFSS--GG--AKEL----LA 112

Query: 129 HP--QSLKILSETFLKTNGIDF------IPRFASRFGMIFLD-----------YCLSIIF 169
           HP  Q + +L + +     ID       I   AS+FG   L+           + +S + 
Sbjct: 113 HPYVQKVLLLIDKWSPFESIDTQAILQKIASAASKFGAQLLNMSAKILGDATNFIISFML 172

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEG 226
           M+  LFF  RD      ++ +   H+ P    +   +   V +V +S  LG  + A+ +G
Sbjct: 173 MLFVLFFLLRD----HAKMVNAVRHVLPLSRSQEDALLTEVEQVAKSAVLGSFLTALAQG 228

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWG 285
              G A WLAG P  +  G + A  + IP  G  + +   ++YLL+      A  L  WG
Sbjct: 229 FAGGFAMWLAGFPG-LFWGSMMAFASFIPVFGTALIWLPAALYLLLINQWEWALFLSGWG 287

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            I +  +D  LRP L+ G   +  L  FF ++GG+   GL+GL  GP++ A+  V++K
Sbjct: 288 IIVVGSIDNILRPLLMQGNSGMNTLLIFFSILGGLHLFGLIGLIYGPIIFAVTLVLFK 345


>gi|300711827|ref|YP_003737641.1| hypothetical protein HacjB3_12330 [Halalkalicoccus jeotgali B3]
 gi|299125510|gb|ADJ15849.1| hypothetical protein HacjB3_12330 [Halalkalicoccus jeotgali B3]
          Length = 343

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 91/165 (55%), Gaps = 2/165 (1%)

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           LF+  +DG S  + L ++   + P   +++      ++ ++ +G  ++A  + ++LG A+
Sbjct: 159 LFYLLKDGESAVEWLRAV-VPIEPDVREELFEETGLLLHNSLVGTAVVAGAQAVLLGVAF 217

Query: 234 WLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            + G+ + V   V T I AM+P  GA I +   SIYL + G    A  LF++GAI +  V
Sbjct: 218 LVLGLGNVVFWIVTTFIAAMVPLLGASIVWIPASIYLFVVGRPVPAVALFVFGAIAISTV 277

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           D  LRP ++    +L  + T  G+ GG+   G +GLFIGPV++ L
Sbjct: 278 DNILRPMVMRRGAQLSPVLTIIGIFGGIAVFGFVGLFIGPVVLGL 322


>gi|289548782|ref|YP_003473770.1| hypothetical protein Thal_1011 [Thermocrinis albus DSM 14484]
 gi|289182399|gb|ADC89643.1| protein of unknown function UPF0118 [Thermocrinis albus DSM 14484]
          Length = 353

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 156/329 (47%), Gaps = 21/329 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +F++LV LY ++ F  PVL A++      P+ +  + +  +S    A +  V  + L ++
Sbjct: 17  LFLMLV-LYIIRPFIVPVLWAVVFTLALHPL-NHLLRRYVKSRFLSAFLLVVLTLLLIVI 74

Query: 77  PLLFLFYYGMLEMKELVSKVV-LANQHGIPVPRWLSDIPGGMWAS--ELWTKHLSHPQSL 133
           P+ FL +  + +   +V+ +V  A  H       +S + G    S  + W  +L   Q  
Sbjct: 75  PVSFLGFMLVEQTLHMVNYLVSFAQNH--TYEELISLLKGHPLFSTVQQWLDYLGTQQVR 132

Query: 134 KILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            +      + +   + +I       G+I      S +F+ I LFF  RDG    + LD  
Sbjct: 133 DVFISGVQRVSQWLLQWISSLIGTSGVILFK---SFVFL-ITLFFLLRDG---DRFLDFA 185

Query: 192 GEHL--FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
              L   P     I   V + I +T  G   +A+ +G++    Y++AG    V LGV T 
Sbjct: 186 KRFLPIDPHDTDMILYTVYRTILATVYGTVGVAVLQGILSFVGYYVAGFDYAVLLGVATF 245

Query: 250 IMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             + +P  G A + F + S+YLL++G +     L ++  + +  +D  LRPF++   + L
Sbjct: 246 FASFVPPFGTASVWFPS-SVYLLLQGKMTEGISLLIYSFLVISSLDNFLRPFIMKFGVPL 304

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
           P++  FF  +GG+   G +GLFIGP++ +
Sbjct: 305 PYVVLFFSTLGGLAAFGFVGLFIGPMIFS 333


>gi|206601945|gb|EDZ38427.1| Conserved hypothetical protein [Leptospirillum sp. Group II '5-way
           CG']
          Length = 361

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 159/343 (46%), Gaps = 25/343 (7%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSAL----IIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           M +F+ L  L +L    AP LSAL    I+ F   PI++ F+ KK     + A++ T+  
Sbjct: 23  MALFLCLFGLLYL--IIAPYLSALLWAAILSFAVTPIHA-FLLKKIGRPAWTALLTTLLF 79

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKV-----VLANQHGIPVPRWLSDIP-GGMWASELWT 124
           +   + PLL L   G+    EL+  V      L + H   VP W++ +P  G     L T
Sbjct: 80  LGFVLAPLLSL---GVPLSHELILAVNGIRTFLEDPHS-KVPDWIARLPLVGSRIDTLLT 135

Query: 125 KHLSHPQSLKILSETFLKTNGI---DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              +HP  L + +   L+T+ +   D +   A+  G     + L     ++A F F   G
Sbjct: 136 GLKTHPIGLDVATAK-LQTHILAFGDQVLSLATNLG----KWFLKFFIFLLAFFAFTLHG 190

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            +I   L  L      +  +   +++P   R    G+   A+ + ++    +W AG+P+ 
Sbjct: 191 ETIWATLSRLFTQWAGSRMEIPLKVIPATTRGVLYGVFFTALFQAILSAIGFWGAGLPNV 250

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           + L  I  + A+ P GA + +    +YL +  +   A    LW  +   I++  ++P  +
Sbjct: 251 LLLTTIAFLAALFPIGAVVVWVPSLLYLTVMHHWIAALIFGLWNLLGGGIIEHFIKPMFI 310

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           G    +PFL    G++GG+   GL+GLFIGPV++++   + K 
Sbjct: 311 GRSSDIPFLAILLGVMGGLEAFGLIGLFIGPVVLSVTLALLKA 353


>gi|152987375|ref|YP_001349002.1| hypothetical protein PSPA7_3648 [Pseudomonas aeruginosa PA7]
 gi|150962533|gb|ABR84558.1| membrane protein, putative [Pseudomonas aeruginosa PA7]
          Length = 354

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 147/322 (45%), Gaps = 16/322 (4%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
            SL+ L  F++ +  A ++ F SWP+            +  A + T+  + L  +PL++L
Sbjct: 19  ASLWVLAPFWSALFWAAVLAFASWPLMRMLTRLLGGRESLAAGLLTLGWIVLVALPLVWL 78

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVP-RWLSDIPGGMWASEL---WTKHLSHPQSLKILS 137
            +     ++ L+  +      G+P P  W++ +P  +    L   W        +   + 
Sbjct: 79  GFGLADNVRSLMELLKNLQVEGLPPPPSWMAGVP--LVGDRLIGWWDSIDQQGVAFFYVL 136

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
           + ++   G   + R A   G I     L ++  ++ +FFFYRDG  +   +    E L  
Sbjct: 137 KPYVGEVGNWLLARSAKIGGGI-----LELVLSLVLIFFFYRDGPRLESIVHRALERLIG 191

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA--MIP 255
              +    +V   ++    G+   A  + L+    + +AGVP  + LG++T + +  M+P
Sbjct: 192 NRAEHYRDLVAGTVQRVVNGVIGTAAAQALLAWIGFTIAGVPGAMLLGLLTFVFSLLMVP 251

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P+ +   + +L  +G+  +   L LWG   +  VD  L+P+L+     LP +    G
Sbjct: 252 ---PLVWGPATAWLFFQGDYGHGIFLGLWGFFIISGVDNILKPYLISRGGNLPLVVVLLG 308

Query: 316 LVGGVRTMGLLGLFIGPVLMAL 337
           + GG+   G +GLF+GP+L+A+
Sbjct: 309 VFGGLLAFGFMGLFLGPILLAV 330


>gi|258542289|ref|YP_003187722.1| transporter [Acetobacter pasteurianus IFO 3283-01]
 gi|256633367|dbj|BAH99342.1| transporter [Acetobacter pasteurianus IFO 3283-01]
 gi|256636426|dbj|BAI02395.1| transporter [Acetobacter pasteurianus IFO 3283-03]
 gi|256639479|dbj|BAI05441.1| transporter [Acetobacter pasteurianus IFO 3283-07]
 gi|256642535|dbj|BAI08490.1| transporter [Acetobacter pasteurianus IFO 3283-22]
 gi|256645590|dbj|BAI11538.1| transporter [Acetobacter pasteurianus IFO 3283-26]
 gi|256648643|dbj|BAI14584.1| transporter [Acetobacter pasteurianus IFO 3283-32]
 gi|256651696|dbj|BAI17630.1| transporter [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654687|dbj|BAI20614.1| transporter [Acetobacter pasteurianus IFO 3283-12]
          Length = 363

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 163/345 (47%), Gaps = 29/345 (8%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF--IVPLLFLFYY 84
           L  F + +L A ++ +T+WP++     +   ++  L    T++++C    ++PL FL   
Sbjct: 29  LAPFSSALLWAGVLAYTTWPLFQHLRRRMGPNAASL----TMTLLCAVGVVLPLAFLASA 84

Query: 85  GMLEMKELVSKVV--LANQHGIP-VPRWLSDIPG------GMWASELWTKHLSH-PQSLK 134
            +        +++  +   H +P +P W++ +P         W  E W++++S     L+
Sbjct: 85  CVSSGPRWARQIMTFVGTIHELPPLPHWVTSLPAFGPDISHHW--ERWSRNISSVGDELR 142

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
             +   +++  ++ + R A        +  L ++  +   FFF+  G  +   + ++   
Sbjct: 143 PYAGEIIQSL-LEVLMRMA--------NGALHLVMALFIAFFFWLSGPMLWDTVQAVMVR 193

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           +      +   IV   +R T  G+   AI +G++ G   WL GV   V LGV+ A +A+ 
Sbjct: 194 IAGHQAGRHLHIVGSTVRGTVYGILGTAIIQGILTGLGLWLLGVGEAVILGVLAAFLAVF 253

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P GAP+ +   +++L    +      L L+G + +   D  +RP  +    KLP+L T  
Sbjct: 254 PIGAPLVWIPAALWLFGMHHPGKGILLLLYGVLIISGADHLIRPLFIARGSKLPYLLTVL 313

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G++GG+   G +G+F+GP+L+A+   +  E   A  E  + ++ +
Sbjct: 314 GVIGGLLAFGGVGIFLGPILLAIGFTLTTE--FAADEAAQPLAQD 356


>gi|161521467|ref|YP_001584894.1| hypothetical protein Bmul_4931 [Burkholderia multivorans ATCC
           17616]
 gi|160345517|gb|ABX18602.1| protein of unknown function UPF0118 [Burkholderia multivorans ATCC
           17616]
          Length = 353

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 94/202 (46%), Gaps = 14/202 (6%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQ------LDSLGEHLFPAYWKKISRIVPKV 210
           G     + +S   M+  +FF  RDG  I ++      LD   ++L  A +         V
Sbjct: 158 GQNTFQFIVSFGVMLYMVFFLLRDGGEIGRRVRRALPLDEEHKNLLLAKFTT-------V 210

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYL 269
           +R+T  G   +A+ +G++ G  +W+ G+   V  G + A ++++P  GA + +   ++Y 
Sbjct: 211 VRATVKGNIAVALVQGILGGLIFWILGIQGVVLWGALMAFLSLLPAIGASLVWVPAALYF 270

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           L  G ++    L  +    + +VD  LRP LVG   K+P        +GG+   G+ G  
Sbjct: 271 LATGAVWKCVILVAFCVGVIGLVDNLLRPILVGKDTKMPDWVVLISTLGGMALFGINGFV 330

Query: 330 IGPVLMALIAVIWKESIMAIKE 351
           IGP++ AL    W     A +E
Sbjct: 331 IGPLVAALFMASWDIYARAEQE 352


>gi|221197138|ref|ZP_03570185.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
 gi|221203811|ref|ZP_03576829.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gi|221175977|gb|EEE08406.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gi|221183692|gb|EEE16092.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
          Length = 350

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 94/202 (46%), Gaps = 14/202 (6%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQ------LDSLGEHLFPAYWKKISRIVPKV 210
           G     + +S   M+  +FF  RDG  I ++      LD   ++L  A +         V
Sbjct: 155 GQNTFQFIVSFGVMLYMVFFLLRDGGEIGRRVRRALPLDEEHKNLLLAKFTT-------V 207

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYL 269
           +R+T  G   +A+ +G++ G  +W+ G+   V  G + A ++++P  GA + +   ++Y 
Sbjct: 208 VRATVKGNIAVALVQGILGGLIFWILGIQGVVLWGALMAFLSLLPAIGASLVWVPAALYF 267

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           L  G ++    L  +    + +VD  LRP LVG   K+P        +GG+   G+ G  
Sbjct: 268 LATGAVWKCVILVAFCVGVIGLVDNLLRPILVGKDTKMPDWVVLISTLGGMALFGINGFV 327

Query: 330 IGPVLMALIAVIWKESIMAIKE 351
           IGP++ AL    W     A +E
Sbjct: 328 IGPLVAALFMASWDIYARAEQE 349


>gi|189352364|ref|YP_001947991.1| putative permease [Burkholderia multivorans ATCC 17616]
 gi|221210990|ref|ZP_03583970.1| conserved hypothetical protein [Burkholderia multivorans CGD1]
 gi|189336386|dbj|BAG45455.1| putative permease [Burkholderia multivorans ATCC 17616]
 gi|221169946|gb|EEE02413.1| conserved hypothetical protein [Burkholderia multivorans CGD1]
          Length = 350

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 94/202 (46%), Gaps = 14/202 (6%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQ------LDSLGEHLFPAYWKKISRIVPKV 210
           G     + +S   M+  +FF  RDG  I ++      LD   ++L  A +         V
Sbjct: 155 GQNTFQFIVSFGVMLYMVFFLLRDGGEIGRRVRRALPLDEEHKNLLLAKFTT-------V 207

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYL 269
           +R+T  G   +A+ +G++ G  +W+ G+   V  G + A ++++P  GA + +   ++Y 
Sbjct: 208 VRATVKGNIAVALVQGILGGLIFWILGIQGVVLWGALMAFLSLLPAIGASLVWVPAALYF 267

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           L  G ++    L  +    + +VD  LRP LVG   K+P        +GG+   G+ G  
Sbjct: 268 LATGAVWKCVILVAFCVGVIGLVDNLLRPILVGKDTKMPDWVVLISTLGGMALFGINGFV 327

Query: 330 IGPVLMALIAVIWKESIMAIKE 351
           IGP++ AL    W     A +E
Sbjct: 328 IGPLVAALFMASWDIYARAEQE 349


>gi|283851814|ref|ZP_06369091.1| protein of unknown function UPF0118 [Desulfovibrio sp. FW1012B]
 gi|283572730|gb|EFC20713.1| protein of unknown function UPF0118 [Desulfovibrio sp. FW1012B]
          Length = 404

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 100/202 (49%), Gaps = 12/202 (5%)

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI---VPKVIRSTFLGMTI 220
            ++ + +I  LFF  RDG ++  Q      +L P    + +RI   +  V +S  LG  +
Sbjct: 166 TMNFVILIFVLFFLIRDGDAMLAQ----ARYLLPLSTDQENRIFRQLDDVAKSVILGAFV 221

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
           IA+ +GL  G   ++ G+ +    G +    ++IP  G  I +  VSIYL++ G+     
Sbjct: 222 IALAQGLAGGIGLFIVGI-NPFFWGFMMGFASLIPVVGTAIIWLPVSIYLMLTGDWQWGL 280

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
            L +WGA+ +  +D  +RP L+    K+     F  ++GG++  G LG+  GP+++    
Sbjct: 281 FLAVWGAVVISSIDSVIRPLLMQNRSKMSTFWVFLAIIGGIKFFGALGILYGPLILGFAM 340

Query: 340 V---IWKESIMAIKENKEKISS 358
           V   ++ E    + E +  +++
Sbjct: 341 VMLTLYAEDYRHVLEERNLVTT 362


>gi|167583840|ref|ZP_02376228.1| hypothetical protein BuboB_00802 [Burkholderia ubonensis Bu]
          Length = 350

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 102/223 (45%), Gaps = 20/223 (8%)

Query: 143 TNGIDFIPRFASRFGMIF----LDYCLSIIFMIIALFFFYRDGFSISQQ------LDSLG 192
           T+G   I +F +   ++       + +S   M+  +FF  RDG  I ++      LD   
Sbjct: 137 TDGAAQISQFVAAQALVIGQNTFQFVISFGVMLYMVFFLLRDGGEIGRRVRRALPLDDEH 196

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           +HL       +S+    V+R+T  G   +A+ +G + G  +W+ G+   V    + A ++
Sbjct: 197 KHLL------LSKFT-TVVRATVKGNIAVALVQGALGGLIFWILGIEGVVLWSALMAFLS 249

Query: 253 MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++P  GA + +   +IY L+   I+    L  +    + +VD  LRP LVG   K+P   
Sbjct: 250 LLPAIGAGLVWVPAAIYFLMIDEIWKCVILVAFCGGVIGLVDNLLRPILVGKDTKMPDWV 309

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                +GG+   G+ G  IGP++ AL    W   I A  E  E
Sbjct: 310 VLLSTLGGMALFGINGFVIGPLIAALFMASW--DIFARAEQGE 350


>gi|325273487|ref|ZP_08139726.1| hypothetical protein G1E_10548 [Pseudomonas sp. TJI-51]
 gi|324101378|gb|EGB98985.1| hypothetical protein G1E_10548 [Pseudomonas sp. TJI-51]
          Length = 290

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 125/279 (44%), Gaps = 27/279 (9%)

Query: 32  APVLSAL----IIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           AP +SAL    I+ F SWP+            T  A + T++ + +  +PL++L +    
Sbjct: 25  APFISALLWGAILAFASWPLMRLLTRVLGGRETLAASLLTMAWILIVALPLVWLGFNLAD 84

Query: 88  EMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            +++  + V      G+P  P WL  +P  G      W        +L    +  L   G
Sbjct: 85  HIRDATAFVRDVQVDGLPDAPAWLGGLPFVGERLVSWWQSLDQQGAALLASVKPHLGQVG 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF---PAYW-- 200
              + R +++ G   L+  LS++F+    FFFYRDG  +S  +  L   L     AY+  
Sbjct: 145 NWLLAR-SAQIGSGVLELTLSLVFV----FFFYRDGPRLSAFVLRLLHRLMGDRAAYYLE 199

Query: 201 ---KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                + R+V  VI +      +  IG        + +AGVP  + LG++T ++++IP G
Sbjct: 200 LVAATVQRVVNGVIGTAAAQALLALIG--------FLIAGVPGAIVLGLVTFMLSLIPMG 251

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
            P+++   + +L+ KG    A  L +WG   +  VD  L
Sbjct: 252 PPLAWIPATAWLVWKGEYGMAVFLGIWGTFVISGVDNVL 290


>gi|194292237|ref|YP_002008144.1| transmembrane protein [Cupriavidus taiwanensis LMG 19424]
 gi|193226141|emb|CAQ72088.1| putative transmembrane protein [Cupriavidus taiwanensis LMG 19424]
          Length = 348

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 100/207 (48%), Gaps = 2/207 (0%)

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
            F+   A   G   L + + +  M+  +FF  RDG  IS +       L  A+ +++   
Sbjct: 141 QFMAAQAVAIGQNTLQFAVGLGVMLYLVFFLLRDGAMISHRFRE-AMPLSDAHTRRLVGR 199

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAV 265
              V+R+T  G  ++A  +G++ G A+ L G+   +  G + A ++++P  GA + +   
Sbjct: 200 FTTVVRATVKGNVVVAAVQGILGGLAFLLLGINGALLWGTLMAFLSLLPAVGAALVWGPA 259

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +IY L+ G  +    L   G + +  VD  LRP LVG   KLP        +GG+   G+
Sbjct: 260 AIYFLLAGPAWKGIALIAIGTLVIGAVDNVLRPILVGKDTKLPDWVVLISTLGGMSVFGI 319

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKEN 352
            G  IGP++ AL    W  S++  +++
Sbjct: 320 NGFVIGPLIAALFMSCWHMSVIEDRDD 346


>gi|153010748|ref|YP_001371962.1| hypothetical protein Oant_3427 [Ochrobactrum anthropi ATCC 49188]
 gi|151562636|gb|ABS16133.1| protein of unknown function UPF0118 [Ochrobactrum anthropi ATCC
           49188]
          Length = 355

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 150/335 (44%), Gaps = 14/335 (4%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +++ VL A+I+     P+               A+++ +  +CL I+P+L +F   + E 
Sbjct: 26  YYSAVLWAVILAVVFSPVQQRLERLLGGRKNIAALLSVLMCICLVIIPMLAIFGSLVQEG 85

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWAS-ELWTKHL---SHPQSLKILSETFLKTNG 145
             L  ++   +     +  ++S I G +  S E W          +    +S   ++ + 
Sbjct: 86  NSLYQRL---SSREFDLNSYISRILGALPDSLEEWLTRFELGDFAEWRARISSAIMQGSQ 142

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           + F  +  S FG   L + +    M+  LFF +RDG  + +++      L   Y ++   
Sbjct: 143 L-FAGKLVS-FGQNTLQFFIGFGIMLYLLFFLFRDGADLGRKIRQ-AIPLNDDYTRQFLE 199

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTA 264
               VIR+T  G  IIAI +G + G  +W  GV + +  GV+   ++M+P  GA + +  
Sbjct: 200 KFIAVIRATVKGNIIIAIIQGTIGGVTFWSLGVEAALLWGVLMTFLSMLPAVGAALVWVP 259

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            + +    G   +   L   G   + +VD  LRP LVG   ++P        VGG+  +G
Sbjct: 260 AAAWFFASGEWISGGILVFVGVFVIGLVDNLLRPPLVGKGTRMPDYVVLISTVGGISLIG 319

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           + G  +GP++ A+    W  S++A +E K   S+ 
Sbjct: 320 INGFVVGPLIAAMFIAAW--SLLA-EEQKGNSSAQ 351


>gi|115376869|ref|ZP_01464091.1| putative exported protein [Stigmatella aurantiaca DW4/3-1]
 gi|310821801|ref|YP_003954159.1| hypothetical protein STAUR_4552 [Stigmatella aurantiaca DW4/3-1]
 gi|115366111|gb|EAU65124.1| putative exported protein [Stigmatella aurantiaca DW4/3-1]
 gi|309394873|gb|ADO72332.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 358

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 131/303 (43%), Gaps = 30/303 (9%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL-------FYYGMLEMKELVSKVVL 98
           P+      K +   +  A + T +V  L +VPL  +           M ++  L+ +V L
Sbjct: 48  PVQDFLCRKLKGRKSLCAAVCTATVFLLILVPLAGVGWLVGRELLQLMADLPALLERVDL 107

Query: 99  ANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGM 158
            N+        ++++P G+          S  + + +LS           +    S    
Sbjct: 108 RNE-------LIANLPHGLGRYVRVDPEGSETERV-LLSAAAGGAAIAQHVLNMGS---- 155

Query: 159 IFLDYCLSIIFMIIALFFFYRDG---FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
              +  + +  M +++++F+ DG   F+ + +L  L +    A+ ++ + +   ++    
Sbjct: 156 ---ELLIDLFLMTVSMYYFFLDGRRLFAEATRLVPLDKRYIQAFAREFADVAYAIV---- 208

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGN 274
            G TI A+ +G V      + GVP     G    I A++P GG  + +  + + LL+ G 
Sbjct: 209 YGNTITALVQGAVGLVGLLIVGVPHAPVWGAAMVIAALVPVGGTTLVWGPIGLLLLLSGK 268

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
           +   T +  WGA  +  +D  +RP L G  + L  L  F  + GG+   G++GL +GP++
Sbjct: 269 VGEGTFVLAWGAGVVSTIDNFIRPRLCGSRMALHPLLVFLSMFGGMAVFGMMGLLVGPLI 328

Query: 335 MAL 337
            A+
Sbjct: 329 AAI 331


>gi|325958067|ref|YP_004289533.1| hypothetical protein Metbo_0309 [Methanobacterium sp. AL-21]
 gi|325329499|gb|ADZ08561.1| protein of unknown function UPF0118 [Methanobacterium sp. AL-21]
          Length = 377

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 92/183 (50%), Gaps = 7/183 (3%)

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           F+F RDG  I + L+ +       Y+K + + +  V++S F G  + A   G++ G  +W
Sbjct: 182 FYFARDGDRIWEYLNYIIPDDRKHYFKTLLKEIDLVLKSIFFGHFVTAALTGIISGIGFW 241

Query: 235 LAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           + G P  + LG +T    ++P  G  P +  A+++Y L+ GN   A  +   G + L ++
Sbjct: 242 IMGYPYPLFLGTLTGFFQLMPIIGHWP-TIVALALYDLVIGNFLRAAAVISLGVL-LSLM 299

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           D  +RP + G    +  L    G + G   +GL+G  IGP+++    V +   +   KEN
Sbjct: 300 DMYVRPKVAGKYADIHPLIFLLGFICGPLVLGLVGFIIGPLVL---GVTYAAVVAYKKEN 356

Query: 353 KEK 355
           ++K
Sbjct: 357 QDK 359


>gi|167566605|ref|ZP_02359521.1| Predicted permease PerM family protein [Burkholderia oklahomensis
           EO147]
 gi|167573685|ref|ZP_02366559.1| Predicted permease PerM family protein [Burkholderia oklahomensis
           C6786]
          Length = 352

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 91/205 (44%), Gaps = 16/205 (7%)

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL-------DSLGEHLFPAY 199
            F+   A   G     + +S   M+  +FF  RDG  I +++       +   +HL   +
Sbjct: 145 QFVATQALSIGQNTFQFVVSFGVMLYLVFFLLRDGGEIGRRVRRALPLAEDHKQHLLTKF 204

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GA 258
                     V+R+T  G   +A  +G + G  +W+ G+   +  G + A ++++P  GA
Sbjct: 205 --------TTVVRATVKGNIAVAAVQGALGGLIFWILGIEGVILWGALMAFLSLLPAIGA 256

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            + +   + YL + G I+    L  +    + +VD  LRP LVG   K+P        +G
Sbjct: 257 GLVWVPAAGYLAVTGQIWKCVILVAFCVGVIGLVDNLLRPILVGKDTKMPDWVVLISTLG 316

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWK 343
           G+   G+ G  IGP++ AL    W 
Sbjct: 317 GMALFGINGFVIGPLVAALFMASWD 341


>gi|118578847|ref|YP_900097.1| hypothetical protein Ppro_0405 [Pelobacter propionicus DSM 2379]
 gi|118501557|gb|ABK98039.1| protein of unknown function UPF0118 [Pelobacter propionicus DSM
           2379]
          Length = 374

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 145/349 (41%), Gaps = 10/349 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I  +I  S + L+ F   ++ A +I  T+WP+  S                + +++ L +
Sbjct: 20  IAILISASFWVLRPFLTALVWATMIVITTWPLMLSLQKCLWGKRALAVAAMSAALLLLLV 79

Query: 76  VPLLFLFYYGMLEMKELVS-KVVLANQHGIPVPRWLSDIP--GGMWASELWTKHLSHPQS 132
           +PL       +    ++V     LA     P P W+  +P  G   A    T     P  
Sbjct: 80  IPLTLAIVSIVERSDDIVGWARSLAMYTPAPPPAWVEQVPVIGPKLAERWRTLATIDPVE 139

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           L       +K   + +I        M+ + + L++I   +     Y  G   +  +    
Sbjct: 140 LSARLAPHVKAI-VGWIVAQTGSVMMMVVQFLLTVIISAV----LYASGEKAAMGVRLFA 194

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L     +  S +  K IR   LG+ + A+ + L+ G    L+GVP+   L  +  I+ 
Sbjct: 195 HRLGGKSGEDASILAAKAIRGVALGVVVTALAQALLGGIGLALSGVPAATLLTAVMFILC 254

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +   G  +      I+L  K      + + +W A+ +  +D  +RP L+     LP L  
Sbjct: 255 VAQLGPSLVLIPAVIWLFWKDQTMWGSIMVVW-AVVVGTMDNFIRPILIKKGADLPLLLI 313

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS-SNF 360
           F G++GG+   G++GLFIGPV++A+   +    +M  +  +E  + S+F
Sbjct: 314 FAGVIGGLIAFGVIGLFIGPVMLAVTYTLLVAWVMGPEPTEEAAAGSDF 362


>gi|220915912|ref|YP_002491216.1| protein of unknown function UPF0118 [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219953766|gb|ACL64150.1| protein of unknown function UPF0118 [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 380

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 92/183 (50%), Gaps = 8/183 (4%)

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
           + L  + M+IALFFF  DG    Q+L +  +   P    +   +V    R+T   +   A
Sbjct: 161 FVLQTVLMLIALFFFLVDG----QRLIAWVDARVPLRAGQFRTLVEDFRRTTLSVVAATA 216

Query: 223 IGEGLVLGSA---YWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNA 278
              G+   +A   Y +A  P+ + L V+T ++A+IP  GA     AV+   L  G+  + 
Sbjct: 217 ATAGIQTVTALAGYLIARAPNPIFLAVLTLVVALIPAVGATAMVLAVAALQLATGHTVSG 276

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             L +WGA  + +VD   RP+L+ G + L     FF L+GG+   G +GL +GP+++  +
Sbjct: 277 IFLAIWGAAVVSLVDNVARPYLLKGGMALHGGVVFFALLGGLAAFGGIGLILGPLVVTFL 336

Query: 339 AVI 341
             +
Sbjct: 337 VTV 339


>gi|148254442|ref|YP_001239027.1| hypothetical protein BBta_2998 [Bradyrhizobium sp. BTAi1]
 gi|146406615|gb|ABQ35121.1| putative membrane protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 359

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 155/341 (45%), Gaps = 22/341 (6%)

Query: 16  IMFIILVSLYFLKG-----FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++ ++LV++    G     F+  VL  L+      P++              A +  + V
Sbjct: 8   VLLVLLVAITLTLGWILLPFYGAVLWGLVGAVVFAPLHRRLARSMHGRDGLAAAVVVLLV 67

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM--WASELWTK-HL 127
           + + I+PL  +   G    ++       A    + + ++   +   +  W  +L  +  L
Sbjct: 68  VLIVIIPLSLI---GAALAQQATGVYAQAQSGQLDIGQYFQKMMEALPTWVVDLLNRFGL 124

Query: 128 SHPQSLKI-LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                LK  LS   L+  G   I   A   G    ++ +++  M+  LFF  RD  ++S+
Sbjct: 125 GSLAGLKDRLSAVLLR--GSQMIAGQALNIGQGTFEFFVNLFLMLYLLFFLLRDQDALSE 182

Query: 187 QLDSLGEHLFPAYWKKISRIVPK---VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           ++ +      P   ++ + ++ K   VIR+T  G  ++A+ +G + G  +W  G+ + + 
Sbjct: 183 RIAT----AIPLRTEQRNALLHKFTVVIRATVKGNLVVALAQGALGGLIFWFLGITAPLL 238

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
             V+ A ++++P  GA + +  V++YLL  G I++   L  +GA+ + +VD  LRP LVG
Sbjct: 239 WAVVMAFLSLLPAVGAGLVWFPVALYLLATGAIWHGVILIAYGALVIGLVDNLLRPILVG 298

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              K+P        +GG+   GL G  IGP + A+   IW 
Sbjct: 299 QDTKMPDYVVLISTLGGIEAFGLNGFIIGPAMAAMFIAIWS 339


>gi|86157174|ref|YP_463959.1| hypothetical protein Adeh_0747 [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85773685|gb|ABC80522.1| protein of unknown function UPF0118 [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 381

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 8/183 (4%)

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
           + L  + M+IALFFF  DG    Q+L +  +   P    +   +V    R+T   +   A
Sbjct: 162 FVLQTVLMLIALFFFLTDG----QRLIAWVDARVPLRAGQFRTLVEDFRRTTLSVVAATA 217

Query: 223 IGEGLVLGSA---YWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNA 278
              G+   +A   Y +A  P+ + L V+T ++A+IP  GA     AV+      G+  + 
Sbjct: 218 ATAGIQTVTALAGYLIARAPNPIFLAVLTLVVALIPAVGATAMVLAVAALQFATGHTVSG 277

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             L +WGA  + +VD   RP+L+ G ++L     FF L+GG+   G +GL +GP+++  +
Sbjct: 278 IFLAIWGAAVVSLVDNVARPYLLKGGMELHGGVVFFALLGGLAAFGGIGLILGPLVVTFL 337

Query: 339 AVI 341
             +
Sbjct: 338 VTV 340


>gi|317047887|ref|YP_004115535.1| hypothetical protein Pat9b_1663 [Pantoea sp. At-9b]
 gi|316949504|gb|ADU68979.1| protein of unknown function UPF0118 [Pantoea sp. At-9b]
          Length = 370

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 120/272 (44%), Gaps = 19/272 (6%)

Query: 99  ANQHGIPVPR--WLSDIPGGMWASELWTKH--LSHPQSLKILSET---FLKTNGIDFIPR 151
           A Q  + VP+  WL ++P  M   +L++ +  L       I+S+      +T G  F   
Sbjct: 100 ATQGHLAVPQLDWLKEVP--MVGDKLFSSYHKLVDGGGSAIMSKLQPYIGRTTG--FFVA 155

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
            A  FG   L   L ++F ++     Y  G  + Q +      +          +  + I
Sbjct: 156 QAGHFGRFMLHLALMLLFSVL----LYWRGEQVGQGIRHFAYRMGGRRGDAAVLLAGQAI 211

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R+  LG+ + A+ +G++ G    ++G+P    L V+  +  ++  G  I      I+L  
Sbjct: 212 RAVALGVVVTALVQGVLGGIGLAISGIPYATLLTVVMILSCLVQLGPLIVLVPAIIWLYW 271

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
            G+    T L +W  + +  +D  LRP L+     LP +    G++GG+   G++GLFIG
Sbjct: 272 SGDTTWGTVLLIWSCV-VGTLDNVLRPMLIRMGADLPMILILSGVIGGLVAFGMIGLFIG 330

Query: 332 PVLMAL---IAVIWKESIMAIKENKEKISSNF 360
           PV++A+   +  +W     A  ++ E +    
Sbjct: 331 PVVLAVSYRLVSVWMHEAPAPDDDPETVVEEL 362


>gi|227540180|ref|ZP_03970229.1| transmembrane protein [Sphingobacterium spiritivorum ATCC 33300]
 gi|227240041|gb|EEI90056.1| transmembrane protein [Sphingobacterium spiritivorum ATCC 33300]
          Length = 354

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 88/163 (53%), Gaps = 4/163 (2%)

Query: 185 SQQLDSLGEHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
           S++++S   H  P   +  + +   V  ++RS  +G+ I+A+ +G V    YW  GV + 
Sbjct: 169 SKRMESTIYHAIPFSTQSKNELWTEVNMMVRSNAIGIPILALCQGFVAMIGYWFLGVENP 228

Query: 242 VALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +  G +TA+  +IP  G    +  +SI+L   G I N   L L+G I +  +D  LR  +
Sbjct: 229 ILWGGMTAVSTIIPVLGTMTVYVPLSIFLFANGQIGNGIGLLLYGFIVIGGIDNVLRFTI 288

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +     +P L T FG++ G++  G+LG+  GP++++ + V+ K
Sbjct: 289 LKKLGDVPPLITVFGVLLGLKLFGMLGVIFGPLILSSVGVLLK 331


>gi|300771905|ref|ZP_07081776.1| brp/Blh family beta-carotene 15,15'-monooxygenase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300761291|gb|EFK58116.1| brp/Blh family beta-carotene 15,15'-monooxygenase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 354

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 88/163 (53%), Gaps = 4/163 (2%)

Query: 185 SQQLDSLGEHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
           S++++S   H  P   +  + +   V  ++RS  +G+ I+A+ +G V    YW  GV + 
Sbjct: 169 SKRMESTIYHAIPFSPQSKNELWTEVNMMVRSNAIGIPILALCQGFVAMVGYWFLGVENP 228

Query: 242 VALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +  G +TA+  +IP  G    +  +SI+L   G I N   L L+G I +  +D  LR  +
Sbjct: 229 ILWGGMTAVSTIIPVLGTMTVYVPLSIFLFANGEIGNGIGLLLYGFIVIGGIDNVLRFTI 288

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +     +P L T FG++ G++  G+LG+  GP++++ + V+ K
Sbjct: 289 LKKLGDVPPLITVFGVLLGLKLFGMLGVIFGPLILSSVGVLLK 331


>gi|167850688|ref|ZP_02476196.1| Predicted permease PerM family protein [Burkholderia pseudomallei
           B7210]
          Length = 352

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 94/216 (43%), Gaps = 18/216 (8%)

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL-------DSLGEHLFPAY 199
            F+   A   G     + +S   M+  +FF  RDG  I +++       +   +HL   +
Sbjct: 145 QFVAAQALSIGQNTFQFVVSFGVMLYLVFFLLRDGGEIGRRVRRALPLDEEHKQHLLTKF 204

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GA 258
                     V+R+T  G   +A  +G + G  +W+ G+   +  G + A ++++P  GA
Sbjct: 205 --------TTVVRATVKGNIAVAAVQGALGGLIFWILGIEGVILWGALMAFLSLLPAIGA 256

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            + +   + Y  + G I+    L  +    + +VD  LRP LVG   K+P        +G
Sbjct: 257 GLVWVPAAGYFAVTGQIWKCVILVAFCVGVIGLVDNLLRPILVGKDTKMPDWVVLISTLG 316

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G+   G+ G  IGP++ AL    W   I A  E  +
Sbjct: 317 GMALFGINGFVIGPLVAALFMASW--DIFARTEQTD 350


>gi|53716720|ref|YP_105073.1| hypothetical protein BMAA0253 [Burkholderia mallei ATCC 23344]
 gi|67643155|ref|ZP_00441903.1| putative membrane protein [Burkholderia mallei GB8 horse 4]
 gi|121597560|ref|YP_991032.1| hypothetical protein BMASAVP1_1436 [Burkholderia mallei SAVP1]
 gi|124382408|ref|YP_001025433.1| hypothetical protein BMA10229_1633 [Burkholderia mallei NCTC 10229]
 gi|126442642|ref|YP_001063635.1| hypothetical protein BURPS668_A2642 [Burkholderia pseudomallei 668]
 gi|126446184|ref|YP_001077494.1| hypothetical protein BMA10247_A0289 [Burkholderia mallei NCTC
           10247]
 gi|126456863|ref|YP_001076534.1| hypothetical protein BURPS1106A_A2503 [Burkholderia pseudomallei
           1106a]
 gi|134278524|ref|ZP_01765238.1| putative membrane protein [Burkholderia pseudomallei 305]
 gi|167002310|ref|ZP_02268100.1| putative membrane protein [Burkholderia mallei PRL-20]
 gi|167724720|ref|ZP_02407956.1| Predicted permease PerM family protein [Burkholderia pseudomallei
           DM98]
 gi|167743670|ref|ZP_02416444.1| Predicted permease PerM family protein [Burkholderia pseudomallei
           14]
 gi|167820858|ref|ZP_02452538.1| Predicted permease PerM family protein [Burkholderia pseudomallei
           91]
 gi|167829215|ref|ZP_02460686.1| Predicted permease PerM family protein [Burkholderia pseudomallei
           9]
 gi|167899287|ref|ZP_02486688.1| Predicted permease PerM family protein [Burkholderia pseudomallei
           7894]
 gi|167907623|ref|ZP_02494828.1| Predicted permease PerM family protein [Burkholderia pseudomallei
           NCTC 13177]
 gi|167915960|ref|ZP_02503051.1| Predicted permease PerM family protein [Burkholderia pseudomallei
           112]
 gi|167923807|ref|ZP_02510898.1| Predicted permease PerM family protein [Burkholderia pseudomallei
           BCC215]
 gi|217422033|ref|ZP_03453536.1| putative membrane protein [Burkholderia pseudomallei 576]
 gi|226195553|ref|ZP_03791140.1| putative membrane protein [Burkholderia pseudomallei Pakistan 9]
 gi|237508341|ref|ZP_04521056.1| conserved hypothetical protein [Burkholderia pseudomallei MSHR346]
 gi|242313791|ref|ZP_04812808.1| putative membrane protein [Burkholderia pseudomallei 1106b]
 gi|254177421|ref|ZP_04884077.1| putative membrane protein [Burkholderia mallei ATCC 10399]
 gi|254184824|ref|ZP_04891413.1| putative membrane protein [Burkholderia pseudomallei 1655]
 gi|254186044|ref|ZP_04892562.1| putative membrane protein [Burkholderia pseudomallei Pasteur 52237]
 gi|254194276|ref|ZP_04900708.1| putative membrane protein [Burkholderia pseudomallei S13]
 gi|254203008|ref|ZP_04909370.1| putative membrane protein [Burkholderia mallei FMH]
 gi|254208340|ref|ZP_04914689.1| putative membrane protein [Burkholderia mallei JHU]
 gi|254263546|ref|ZP_04954411.1| putative membrane protein [Burkholderia pseudomallei 1710a]
 gi|254301103|ref|ZP_04968547.1| putative membrane protein [Burkholderia pseudomallei 406e]
 gi|52422690|gb|AAU46260.1| putative membrane protein [Burkholderia mallei ATCC 23344]
 gi|121225358|gb|ABM48889.1| putative membrane protein [Burkholderia mallei SAVP1]
 gi|126222133|gb|ABN85638.1| putative membrane protein [Burkholderia pseudomallei 668]
 gi|126230631|gb|ABN94044.1| putative membrane protein [Burkholderia pseudomallei 1106a]
 gi|126239038|gb|ABO02150.1| putative membrane protein [Burkholderia mallei NCTC 10247]
 gi|134250308|gb|EBA50388.1| putative membrane protein [Burkholderia pseudomallei 305]
 gi|147746053|gb|EDK53131.1| putative membrane protein [Burkholderia mallei FMH]
 gi|147751027|gb|EDK58095.1| putative membrane protein [Burkholderia mallei JHU]
 gi|157811370|gb|EDO88540.1| putative membrane protein [Burkholderia pseudomallei 406e]
 gi|157933730|gb|EDO89400.1| putative membrane protein [Burkholderia pseudomallei Pasteur 52237]
 gi|160698461|gb|EDP88431.1| putative membrane protein [Burkholderia mallei ATCC 10399]
 gi|169651027|gb|EDS83720.1| putative membrane protein [Burkholderia pseudomallei S13]
 gi|184215416|gb|EDU12397.1| putative membrane protein [Burkholderia pseudomallei 1655]
 gi|217394264|gb|EEC34283.1| putative membrane protein [Burkholderia pseudomallei 576]
 gi|225932038|gb|EEH28038.1| putative membrane protein [Burkholderia pseudomallei Pakistan 9]
 gi|235000546|gb|EEP49970.1| conserved hypothetical protein [Burkholderia pseudomallei MSHR346]
 gi|238524422|gb|EEP87855.1| putative membrane protein [Burkholderia mallei GB8 horse 4]
 gi|242137030|gb|EES23433.1| putative membrane protein [Burkholderia pseudomallei 1106b]
 gi|243061963|gb|EES44149.1| putative membrane protein [Burkholderia mallei PRL-20]
 gi|254214548|gb|EET03933.1| putative membrane protein [Burkholderia pseudomallei 1710a]
 gi|261826786|gb|ABN00128.2| putative membrane protein [Burkholderia mallei NCTC 10229]
          Length = 352

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 94/216 (43%), Gaps = 18/216 (8%)

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL-------DSLGEHLFPAY 199
            F+   A   G     + +S   M+  +FF  RDG  I +++       +   +HL   +
Sbjct: 145 QFVAAQALSIGQNTFQFVVSFGVMLYLVFFLLRDGGEIGRRVRRALPLDEEHKQHLLTKF 204

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GA 258
                     V+R+T  G   +A  +G + G  +W+ G+   +  G + A ++++P  GA
Sbjct: 205 --------TTVVRATVKGNIAVAAVQGALGGLIFWILGIEGVILWGALMAFLSLLPAIGA 256

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            + +   + Y  + G I+    L  +    + +VD  LRP LVG   K+P        +G
Sbjct: 257 GLVWVPAAGYFAVTGQIWKCVILVAFCVGVIGLVDNLLRPILVGKDTKMPDWVVLISTLG 316

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G+   G+ G  IGP++ AL    W   I A  E  +
Sbjct: 317 GMALFGINGFVIGPLVAALFMASW--DIFARTEQTD 350


>gi|237747158|ref|ZP_04577638.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
 gi|229378509|gb|EEO28600.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
          Length = 359

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 4/151 (2%)

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFT 263
           +++   IR+T  G   +A  +G + G  +W+ G+P+ +  G I  I+++IP  GA I + 
Sbjct: 208 KVISTTIRATVFGTIAVAAVQGSLAGFMFWMLGLPAPLLWGAIMTILSIIPLLGAYIIWL 267

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             SIYL + GN+     L  WG   +  VD  L P L+   ++L  +  F  L GG+   
Sbjct: 268 PASIYLALDGNLMYGLILAGWGMFVVGTVDNLLYPILISKKLRLHTVVAFISLAGGILVF 327

Query: 324 GLLGLFIGPVLM---ALIAVIWKESIMAIKE 351
           G  G+ +GP+ +   A +  +W+   +  ++
Sbjct: 328 GAAGIVLGPITLTASAYLMHLWRSRTVESRK 358


>gi|53722867|ref|YP_111852.1| hypothetical protein BPSS1848 [Burkholderia pseudomallei K96243]
 gi|52213281|emb|CAH39324.1| putative membrane protein [Burkholderia pseudomallei K96243]
          Length = 364

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 94/216 (43%), Gaps = 18/216 (8%)

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL-------DSLGEHLFPAY 199
            F+   A   G     + +S   M+  +FF  RDG  I +++       +   +HL   +
Sbjct: 157 QFVAAQALSIGQNTFQFVVSFGVMLYLVFFLLRDGGEIGRRVRRALPLDEEHKQHLLTKF 216

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GA 258
                     V+R+T  G   +A  +G + G  +W+ G+   +  G + A ++++P  GA
Sbjct: 217 --------TTVVRATVKGNIAVAAVQGALGGLIFWILGIEGVILWGALMAFLSLLPAIGA 268

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            + +   + Y  + G I+    L  +    + +VD  LRP LVG   K+P        +G
Sbjct: 269 GLVWVPAAGYFAVTGQIWKCVILVAFCVGVIGLVDNLLRPILVGKDTKMPDWVVLISTLG 328

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G+   G+ G  IGP++ AL    W   I A  E  +
Sbjct: 329 GMALFGINGFVIGPLVAALFMASW--DIFARTEQTD 362


>gi|260771830|ref|ZP_05880748.1| hypothetical protein VIB_000268 [Vibrio metschnikovii CIP 69.14]
 gi|260613122|gb|EEX38323.1| hypothetical protein VIB_000268 [Vibrio metschnikovii CIP 69.14]
          Length = 285

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 86/170 (50%), Gaps = 8/170 (4%)

Query: 193 EHLFP---AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            H+ P   +   K+   + +V +S  +G  + AI +G+  G A WL G+P  +  G +  
Sbjct: 116 RHILPLSRSQEDKLLHEIQQVSKSAIMGSFLTAIAQGVAGGLAMWLVGLPG-LFWGTMMG 174

Query: 250 IMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
             + IP  G  + +   ++YLL+ G+   A  L +W    +  +D  LRP L+ G   + 
Sbjct: 175 FASFIPLIGTALIWIPATLYLLVIGDTAWALFLLIWSIAIVGSIDNLLRPLLMQGSAGMN 234

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV---IWKESIMAIKENKEK 355
            L  FF L+GG++  GL+GL  GP++ A+  V   +++E   +    K++
Sbjct: 235 TLMIFFSLLGGIQLFGLIGLIYGPLIFAITIVLFNLYEEEFASFLNQKDR 284


>gi|76818196|ref|YP_336095.1| PerM family permease [Burkholderia pseudomallei 1710b]
 gi|76582669|gb|ABA52143.1| Predicted permease PerM family [Burkholderia pseudomallei 1710b]
          Length = 374

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 94/212 (44%), Gaps = 10/212 (4%)

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
            F+   A   G     + +S   M+  +FF  RDG  I +++        P   +    +
Sbjct: 167 QFVAAQALSIGQNTFQFVVSFGVMLYLVFFLLRDGGEIGRRV----RRALPLDEEHKQHL 222

Query: 207 VPK---VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISF 262
           + K   V+R+T  G   +A  +G + G  +W+ G+   +  G + A ++++P  GA + +
Sbjct: 223 LTKFTTVVRATVKGNIAVAAVQGALGGLIFWILGIEGVILWGALMAFLSLLPAIGAGLVW 282

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              + Y  + G I+    L  +    + +VD  LRP LVG   K+P        +GG+  
Sbjct: 283 VPAAGYFAVTGQIWKCVILVAFCVGVIGLVDNLLRPILVGKDTKMPDWVVLISTLGGMAL 342

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            G+ G  IGP++ AL    W   I A  E  +
Sbjct: 343 FGINGFVIGPLVAALFMASW--DIFARTEQTD 372


>gi|167840497|ref|ZP_02467181.1| Predicted permease PerM family protein [Burkholderia thailandensis
           MSMB43]
          Length = 352

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 90/198 (45%), Gaps = 2/198 (1%)

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
            F+   A   G     + +S   M+  +FF  RDG  I +++      L  A+ + +   
Sbjct: 145 QFVAAQALSIGQNTFQFVVSFGVMLYLVFFLLRDGGEIGRRVRR-ALPLNEAHKQHLLTK 203

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAV 265
              V+R+T  G   +A  +G + G  +W+ G+   +  G + A ++++P  GA + +   
Sbjct: 204 FTTVVRATVKGNIAVAAVQGALGGLIFWILGIEGVILWGALMAFLSLLPAIGAGLVWVPA 263

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           + Y  + G ++    L  +    + +VD  LRP LVG   K+P        +GG+   G+
Sbjct: 264 AGYFAVTGQVWKCVILVAFCVGVIGLVDNLLRPILVGKDTKMPDWVVLISTLGGMALFGI 323

Query: 326 LGLFIGPVLMALIAVIWK 343
            G  IGP++ AL    W 
Sbjct: 324 NGFVIGPLVAALFMASWD 341


>gi|224825906|ref|ZP_03699010.1| protein of unknown function UPF0118 [Lutiella nitroferrum 2002]
 gi|224602130|gb|EEG08309.1| protein of unknown function UPF0118 [Lutiella nitroferrum 2002]
          Length = 360

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 72/326 (22%), Positives = 140/326 (42%), Gaps = 9/326 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS--KKEESSTFLAVIATVSVMC 72
           ++  ++   L  +  F   +  A+II  ++WP+Y       +   +   L V+  + +  
Sbjct: 19  IVALLVWACLQVILPFLGALTWAVIIAISAWPLYQRLTQCLRGRGNLAALLVVLLLGLAL 78

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQ 131
              + L+ L     L     ++   LAN    P P WL  IP  G   ++ W    +   
Sbjct: 79  AVPLGLMVLTLTDTLPHLNGIAHG-LANFTLPPPPAWLGKIPLTGEALTQYWVTAQTDLP 137

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            L    + ++    +  + R     G +     L I+  II       +G ++ +  + +
Sbjct: 138 GLLARLKPWINQGALWLLGR-----GAMLGVSLLEIVMAIIVAGLLLANGEALWRIAERV 192

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L  A   ++ ++V + IR    G+   A+ + ++      +AGVP  +ALG +  ++
Sbjct: 193 INKLGGASASELPQVVARTIRGVTTGVVGTALAQTILCVIGLLIAGVPGALALGFLCFVI 252

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           A+      + +   + ++   G       L LWG + +  +D  L+P L+    KLP   
Sbjct: 253 AVAQLPTLLVWLPAAGWVFYTGATGMGVFLLLWGFLLVNTIDNVLKPLLISQGAKLPLSL 312

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMAL 337
            F G++GG+   G++GLFIGP L+A+
Sbjct: 313 IFLGVIGGLLAWGIIGLFIGPTLLAI 338


>gi|37526518|ref|NP_929862.1| putative inner membrane protein [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36785949|emb|CAE15001.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 369

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 135/322 (41%), Gaps = 8/322 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            +I+ S + +K F    + A ++   +WP+                 I T+ ++ LF++P
Sbjct: 22  LLIVTSFWVIKPFIFGFVWAGMVVIATWPLLEKLQDSLWGKRWIAVSIMTLLLILLFVIP 81

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKIL 136
           +  L    +     L+      +   IP   WL+ IP  G      W   ++   ++ I 
Sbjct: 82  IALLVSSLLENSAPLIQWTKSPSHFQIPTMTWLNSIPLVGDKLYSAWNSLITDGGNVLIA 141

Query: 137 S-ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
             + ++      F  + A+  G      CL ++F ++     Y  G  ++  +      L
Sbjct: 142 KVQPYVGEAATWFFTQ-AANAGRFVFHLCLMVLFSVL----LYLKGEQVTMSIRHFAIRL 196

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                     +  + IR+  LG+ + A+ + ++ G    ++G+P    L V+  +  +  
Sbjct: 197 ANKRGDAAILLAAQSIRAVALGVVVTALVQAIIGGLGLAVSGIPYATLLTVLMFVCCVAQ 256

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G  +       +L   G+    T L +W  I +  +D  LRPFL+     LP      G
Sbjct: 257 LGPLLILVPAVAWLYWTGDTTWGTVLLVWSCI-VTTMDGFLRPFLIRLGADLPMALILIG 315

Query: 316 LVGGVRTMGLLGLFIGPVLMAL 337
           ++GG+ + G++GLFIGPV++A+
Sbjct: 316 VIGGILSFGMIGLFIGPVVLAV 337


>gi|302342979|ref|YP_003807508.1| hypothetical protein Deba_1546 [Desulfarculus baarsii DSM 2075]
 gi|301639592|gb|ADK84914.1| protein of unknown function UPF0118 [Desulfarculus baarsii DSM
           2075]
          Length = 366

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 150/341 (43%), Gaps = 27/341 (7%)

Query: 13  RW----MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           RW     I+F++  +   ++ F   +  A+++     P+Y   +    +     + +  +
Sbjct: 13  RWFFAACILFVLYCAYLLVEPFLTSIFLAIVLVVVGGPVYDLMLKLTRQRRGLASALTCL 72

Query: 69  SVMCLFIVPLLFL---FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT- 124
             + + +VPL+ +        L++   VS ++  N         +  +   +   E  T 
Sbjct: 73  LFILIIVVPLVLITGVITSQALDLYNTVSAMLAGNSLSEMFNSGMGRLGPFLDKLEEHTG 132

Query: 125 ----KHLSHP-QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                 L H  ++LK +S   L +N  D + R A+   + F         M+   F+   
Sbjct: 133 ITRMDILQHAAEALKYVSN-LLYSNLTDLL-RGATNLAIGF-------ALMMFVAFYLLM 183

Query: 180 DGFSISQQLDSLGEHLFPA-YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           DG S++Q+   L     PA    +I   +   +R+T  G   +A+ +G   G  + + GV
Sbjct: 184 DGQSMAQKAIRLSP--LPADTTNQIRDDILSTLRTTMRGTVFLAVIQGTAGGLGFGVFGV 241

Query: 239 PSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P  +  G +    +++P  G  + F     YL++ G++F    + +W      I D  LR
Sbjct: 242 PHALFWGTVMVFASVVPLVGTALLFIPAGTYLILSGDVFQGVGVMIWCEASQVICDNFLR 301

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           P L+GG    P L TFF ++GG+   G++GL +GP+++A++
Sbjct: 302 PRLIGGGNIHPLL-TFFSVLGGLSVFGMVGLILGPLVLAVL 341


>gi|83718340|ref|YP_438729.1| hypothetical protein BTH_II0529 [Burkholderia thailandensis E264]
 gi|167577075|ref|ZP_02369949.1| hypothetical protein BthaT_02997 [Burkholderia thailandensis TXDOH]
 gi|167615244|ref|ZP_02383879.1| hypothetical protein BthaB_03087 [Burkholderia thailandensis Bt4]
 gi|257141807|ref|ZP_05590069.1| hypothetical protein BthaA_21719 [Burkholderia thailandensis E264]
 gi|83652165|gb|ABC36229.1| membrane protein, putative [Burkholderia thailandensis E264]
          Length = 352

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 94/216 (43%), Gaps = 18/216 (8%)

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL-------DSLGEHLFPAY 199
            F+   A   G     + +S   M+  +FF  RDG  I +++       +   +HL   +
Sbjct: 145 QFVAAQALSIGQNTFQFVVSFGVMLYLVFFLLRDGGEIGRRVRRALPLDEEHKQHLLTKF 204

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GA 258
                     V+R+T  G   +A  +G + G  +W+ G+   +  G + A ++++P  GA
Sbjct: 205 --------TTVVRATVKGNIAVAAVQGALGGLIFWILGIEGVILWGALMAFLSLLPAIGA 256

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            + +   + Y  + G ++    L  +    + +VD  LRP LVG   K+P        +G
Sbjct: 257 GLVWVPAAGYFAVTGQVWKCVILVAFCVGVIGLVDNLLRPILVGKDTKMPDWVVLISTLG 316

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G+   G+ G  IGP++ AL    W   I A  E  +
Sbjct: 317 GMALFGINGFVIGPLVAALFMASW--DIFARTEQTD 350


>gi|117620860|ref|YP_858434.1| hypothetical protein AHA_4000 [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562267|gb|ABK39215.1| putative membrane protein [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 359

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 148/328 (45%), Gaps = 20/328 (6%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            +I+     L+ F   ++ A +I   +WP+               A+  T+ ++ +F++P
Sbjct: 18  LLIVSCFMVLRPFLPALVWATMITIATWPLMLMVQRLLWGKRALAALSMTLVLLLMFVIP 77

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPR--WLSDIP--GGMWASELWTKHLSHPQSL 133
           L F+    + E   ++ ++     H  P P   WL  +P  GG    + W + L+    +
Sbjct: 78  L-FMALANVAEKAPMLIELGTTISHS-PPPELLWLQQVPLVGGK-LYDFWQQILASGGQV 134

Query: 134 --KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
               L+  F +T    ++   A   G++F+ + L++   I  L   Y  G  ++  +   
Sbjct: 135 LFAKLAPYFGQTA--RWLASQAGNLGLLFVHFLLTV--GICGLL--YHSGEVVATGIRRF 188

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT--A 249
              L        + +  + IR+  +G+ + A+ +  V G    +AG+P  + L V+    
Sbjct: 189 AHRLAGERGDNATVLASQAIRAVAMGVVVTALVQSSVAGLGLLIAGIPYTMILVVVMFLL 248

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I+A I G  P+    V  YL   G+    T L +W  +    +D  LRPFL+     LP 
Sbjct: 249 IVAQI-GPFPVLLACVG-YLYWSGDTTWGTFLLVWSLLA-GTMDNFLRPFLIKRGADLPL 305

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           +    G++GG+  MG++GLFIGPV++A+
Sbjct: 306 ILILVGVIGGLLAMGIIGLFIGPVVLAV 333


>gi|239906620|ref|YP_002953361.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
 gi|239796486|dbj|BAH75475.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
          Length = 370

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 148/341 (43%), Gaps = 31/341 (9%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEE----SSTFLAVIATVSVMCLFIVPLLF----LFY 83
           AP ++ LIIG     ++     + E       T  A++ T  +    I+P+ F    L  
Sbjct: 29  APFVNILIIGVVLAALFRPVQRRVERLCGPRPTLAALLTTGLIFTCIIIPIFFFLGSLLA 88

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE----LWTKHLSHPQSLKILSET 139
            G+  +  L +++   + + +     +S  P   W  E    L  K L+    L  +S  
Sbjct: 89  QGVQSVNALQAQLAATDFNKLFSHEAIS--PYMDWVQEHLPFLDLKKLALQADLIDIS-- 144

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
             KT G   I       G +F+   ++ + ++  LFF  RDG  + Q+L     +L P  
Sbjct: 145 --KTAGQMLIDSGTKIIGNVFV-LTMNFVILMFVLFFLIRDGERMMQRL----RYLLPLT 197

Query: 200 WKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
             + +RI   +  V +S  LG   IA+ +GL  G   ++ G+      G +    ++IP 
Sbjct: 198 TDQENRIFRQLDDVAKSVILGAFFIALAQGLAGGIGLFIVGIKPFF-WGCMMGFASLIPV 256

Query: 257 -GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G  I +  V+IYL++ G+      L  WGA+ +  +D  +RP L+     +     F  
Sbjct: 257 VGTAIIWLPVAIYLMLTGHWQWGLFLMGWGAVVVSGIDSIIRPLLMQNRSNMSTFWVFLS 316

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAV---IWKESIMAIKENK 353
           ++GG++  G LG+  GP+++    V   ++ E    + E +
Sbjct: 317 IIGGIKFFGALGILYGPLILGFAMVMLTLYAEDYRHVLEER 357


>gi|15606132|ref|NP_213509.1| hypothetical protein aq_740 [Aquifex aeolicus VF5]
 gi|8928496|sp|O66948|Y740_AQUAE RecName: Full=UPF0118 membrane protein aq_740
 gi|2983326|gb|AAC06916.1| hypothetical protein aq_740 [Aquifex aeolicus VF5]
          Length = 353

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 143/319 (44%), Gaps = 28/319 (8%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P++ A++ G   +P+Y  FI +K +S    A +    V+   ++P      + ++  +++
Sbjct: 30  PIVWAIVFGIVLYPLYG-FIKRKLKSENLAAFLVIFIVLVAIVIPFTI---FAVITAQQI 85

Query: 93  VS---KVV-LANQHGI-PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT--NG 145
           +    KVV     H +  +   L +IP      E     L++ QS     E F +   N 
Sbjct: 86  IVFSIKVVNFVQTHSVNDLINSLKEIPFLKEKRESLEPLLNYLQS-----EEFRRALINA 140

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMI----IALFFFYRDGFSISQQLDS---LGEHLFPA 198
           ++ I  F       ++    + +F +    + LFF  RDG  + +++ +   +       
Sbjct: 141 LNSILTFVGDRLRSYVYTAGTSLFHVFVFLLTLFFILRDGEKVLKEIINSIPMKREDLEE 200

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-G 257
             K I R V  VI  T +G    A+ + ++    Y LAGV   +   +IT   A +P  G
Sbjct: 201 ILKTIYRTVLAVIYGT-VGT---AVAQSIMGFIGYSLAGVEFALIWALITFFAAFVPPFG 256

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
           A   +  + IYL     I     L  +G   +  +D  +RP ++   IKLP++  FF  +
Sbjct: 257 AAFVWVPMDIYLFTTKGIKEGLILLFFGTFLISTMDNIVRPLVMKQGIKLPYVALFFSTI 316

Query: 318 GGVRTMGLLGLFIGPVLMA 336
           GG+   G +G+F+GP++++
Sbjct: 317 GGLIKFGFIGVFLGPIILS 335


>gi|327393717|dbj|BAK11139.1| UPF0118 inner membrane permease protein YdiK [Pantoea ananatis
           AJ13355]
          Length = 376

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 67/325 (20%), Positives = 137/325 (42%), Gaps = 19/325 (5%)

Query: 43  TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH 102
            +WP+            +   ++ T+ ++ LFI+P+  L    +     +++       H
Sbjct: 57  ATWPLMLKIQRLLWGRRSLAVIVMTILLLLLFIIPVALLVNSLIDNSAPVIAWA--TQGH 114

Query: 103 GIPVPRWLSDIPGGMWASELWTKHLS-----HPQSLKILSETFLKTNGIDFIPRFASRFG 157
            +P   WL+DIP  M   +L+  +           +  L     +T G  F    A  FG
Sbjct: 115 MLPTLSWLNDIP--MVGEKLYASYQKLVAGGGAAIMAKLQPYVGRTTG--FFVAQAGHFG 170

Query: 158 MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG 217
              +   + ++F ++     Y  G   +Q +      +          +  + +R+  LG
Sbjct: 171 RFMIHLAVMLLFSVL----LYWRGEQAAQGIRHFAWRMAGRRGDAAVLLAGQAVRAVALG 226

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFN 277
           + + A+ +G++ G    ++G+P    L V+  +  ++  G  +      +YL   G+   
Sbjct: 227 VVVTALVQGVLGGIGLAVSGIPYATLLTVLMILCCLVQIGPLLVLVPAIVYLYWSGDTTW 286

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
            T L +W  + +  +D  LRP L+     LP +    G++GG+   G++GLFIGPV++A+
Sbjct: 287 GTVLLIWSCV-VGTLDNILRPVLIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVVLAV 345

Query: 338 ---IAVIWKESIMAIKENKEKISSN 359
              +  +W   + A + +   + S 
Sbjct: 346 SYRLVSVWMHEVPAPQADPLSVVSE 370


>gi|78188186|ref|YP_378524.1| hypothetical protein Cag_0203 [Chlorobium chlorochromatii CaD3]
 gi|78170385|gb|ABB27481.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3]
          Length = 362

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 153/360 (42%), Gaps = 43/360 (11%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +F  ++  + L    A + SAL     + P+Y+ F        +  A++  ++++ + ++
Sbjct: 22  LFFTMIRYFLLVVVLAAIFSAL-----AMPVYNRFERGLRGKRSLSAIMTLLTLLFIVVL 76

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
           PL  L    + +   L +  V   Q  +  P                     H QSL   
Sbjct: 77  PLAILLGLVVKQAIRLSNVAVPFVQEQLLTPSQFDH----------------HLQSLFFY 120

Query: 137 SETFLKTNGI-DFIPRFASRFGMIFLDYCLSIIFMII-----------ALFFFYRDGFSI 184
            E  L    I   +   A++FG +  +   S  +  +            +FFF RDG   
Sbjct: 121 PELVLYREEILQKVSELATKFGTLLFNAISSFTYSAVTEIVLFFVFLYTMFFFLRDG--- 177

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPK---VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            Q L S+   L P       R++ K   V R+T  G  ++ + +G + G A ++AG+ S 
Sbjct: 178 KQMLQSMLA-LLPLSHTDQYRLLDKFLSVTRATLKGSLVVGMVQGSLAGMALYMAGIESA 236

Query: 242 VALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           +  G + + +++IP  G A +   AV IYL   G+   A  + L+  I +  +D  +RP 
Sbjct: 237 LFWGTVMSFLSLIPVLGSALVWIPAV-IYLATIGSYPQALGVLLFCMIVVGQIDNIIRPI 295

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           LVG   ++  L  FFG +GG+   G  G+ +GP++ AL   IW+    +  +    I  N
Sbjct: 296 LVGRDTQMHELLIFFGTLGGIGMFGFFGVILGPIVAALFTTIWEMYAESFGDYLSTIQKN 355


>gi|218778346|ref|YP_002429664.1| hypothetical protein Dalk_0489 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218759730|gb|ACL02196.1| protein of unknown function UPF0118 [Desulfatibacillum alkenivorans
           AK-01]
          Length = 356

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 102/198 (51%), Gaps = 11/198 (5%)

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK---VIRSTFLG 217
           L + L+ +FM++ +FF   DG  +   L  +     P    +  ++V K   +  +  LG
Sbjct: 162 LSFVLNFLFMVLIIFFILIDGGKLVDYLVDMS----PLPQDQDEKLVAKFKDMSGAVILG 217

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIF 276
             +  + +G++ G+ + L G+PS    GV+  I+A +P  G  + F   +I + I+G I 
Sbjct: 218 NGVCGLAQGILGGAVFALFGLPSPFLWGVVMGILAFLPIVGIGVVFLPAAIIMFIQGKIA 277

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
                 ++ +I  F V+  ++P LVG  +++  L  F  ++GG++  G+LG+  GP+++ 
Sbjct: 278 TGVFFIIFYSILSFSVEYVIKPKLVGDRVQMHPLLVFLAIMGGLKIFGILGVIYGPLIVT 337

Query: 337 L---IAVIWKESIMAIKE 351
               +A I++ S  AI E
Sbjct: 338 FFLTLADIYRASYKAIVE 355


>gi|262274963|ref|ZP_06052774.1| putative permease [Grimontia hollisae CIP 101886]
 gi|262221526|gb|EEY72840.1| putative permease [Grimontia hollisae CIP 101886]
          Length = 360

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 73/136 (53%), Gaps = 2/136 (1%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSI 267
           KV +S  LG  + A+ +GLV G A WLAG  + +  G + A  + IP  G  + +   + 
Sbjct: 210 KVAKSAVLGSFLTALAQGLVGGFAMWLAGF-AGLFWGTMMAFASFIPVVGTALIWVPAAT 268

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           YL + G    A  L  WG I +  +D  LRP L+ G   +  L  FF L+GG+   GL+G
Sbjct: 269 YLFLIGQWEWAAFLAGWGVIVVGSIDNLLRPLLMQGNSGMNTLLIFFSLIGGLHVYGLMG 328

Query: 328 LFIGPVLMALIAVIWK 343
           L  GP++ +L  V+++
Sbjct: 329 LIYGPIIFSLTLVLFR 344


>gi|253700636|ref|YP_003021825.1| hypothetical protein GM21_2015 [Geobacter sp. M21]
 gi|251775486|gb|ACT18067.1| protein of unknown function UPF0118 [Geobacter sp. M21]
          Length = 354

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 150/340 (44%), Gaps = 31/340 (9%)

Query: 30  FFAPVLS----ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F AP+L     ALIIG  + P Y   +++  +     + +  ++V    ++P  +L    
Sbjct: 25  FAAPILKPLAWALIIGIATMPHYQRILNRFPDRPGRASGLMLLAVAVCLVLPASWLVITA 84

Query: 86  ML-------EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            +       ++++++ +V   +         LS IP        + + +S  +   I   
Sbjct: 85  AVNAPEWYRQLEQMIQEVTRTSSGA------LSQIP-------YYDRIMSLVERFGIDLG 131

Query: 139 TF---LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG-FSISQQLDSLGEH 194
                + ++G   I   A+       D+  +++  +  LFF YRDG  +++  +  L  +
Sbjct: 132 NIGGKIASSGSTVILNAATNMVRNLFDFIFTLLVALFLLFFIYRDGERAVALCIGKLAPN 191

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
             P   +  +  +  +  +  +G  +    +G++ G  YW+AGVP+ V    +TAI A+I
Sbjct: 192 --PRKAQHYATQIRSITTAVAVGTILTCCTQGVIAGLGYWVAGVPAPVFFAALTAIAALI 249

Query: 255 P-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P  G  I +  +     + G+   A  L LW    +   D  +RP  +G    +  L   
Sbjct: 250 PVVGTAIIWVPIVALTAVTGSYLTALLLALWCVFFVGFSDNAIRPLAIGAASDISVLAVV 309

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            G + GV  MGLLGL IGPV+ A++  +W +++ A  + +
Sbjct: 310 TGALCGVVMMGLLGLIIGPVIFAVLFSMWDDAVSAAGDTE 349


>gi|290475511|ref|YP_003468399.1| putative transport protein [Xenorhabdus bovienii SS-2004]
 gi|289174832|emb|CBJ81633.1| putative transport protein [Xenorhabdus bovienii SS-2004]
          Length = 369

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 140/341 (41%), Gaps = 22/341 (6%)

Query: 34  VLSALIIGF--------TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           VLS  ++GF         +WP+                 I T+ ++ LF++P+  L    
Sbjct: 30  VLSPFVLGFIWSGMVVIATWPLLEKLQQHLWGKRWIAVSIMTLLLVLLFVIPIALLVSSL 89

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +     L+      +   +P   WLS IP  +   +L+ K     Q         L T  
Sbjct: 90  LENSTPLIEWAKSPSTFQLPQLEWLSRIP--VIGEDLYVKW----QDTVADGSNILLTKI 143

Query: 146 IDFIPRFASRFGMIFLD---YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
             +I + A+ F     +   +   ++ M++     Y  G  +   +      L       
Sbjct: 144 PPYIGKTATWFFTQAANAGRFLFHLVLMVLFSVLLYWKGEQVMLSIRHFAIRLADQRGDA 203

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +  +  + IR+  LG+ + A+ + +  G    +AG+P  + L V+  I  +   G  +  
Sbjct: 204 VVLLAAQSIRAVALGVVVTALVQAIAGGIGLAIAGIPYAMILTVLMFICCVAQLGPLLVL 263

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
                +L   G     T L +W  + L  +D  LRPFL+     LP +    G++GG+ +
Sbjct: 264 VPSIAWLYWTGETTWGTVLVIWSLV-LTTMDGVLRPFLIRLGADLPMVLILTGVIGGILS 322

Query: 323 MGLLGLFIGPVLMAL---IAVIWKESIMAIKENKEKISSNF 360
           +GL+GLFIGPV++A+   + + W   +    ENK + +  +
Sbjct: 323 LGLIGLFIGPVVLAVSYRLLLAWMNEVPK-PENKTEDTEKY 362


>gi|312881082|ref|ZP_07740882.1| protein of unknown function UPF0118 [Aminomonas paucivorans DSM
           12260]
 gi|310784373|gb|EFQ24771.1| protein of unknown function UPF0118 [Aminomonas paucivorans DSM
           12260]
          Length = 370

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 143/320 (44%), Gaps = 22/320 (6%)

Query: 33  PVLSALIIGFTSWPIYSSFISK-KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
           P+    +  F + P++++   + +       A +  ++ +C  + P+ +L  +   E   
Sbjct: 42  PLAWGAVAAFLTHPLFAALNRRTRGHCPGLCATLTLLAALCFVLAPVSYLVTFLGQETSA 101

Query: 92  LVSKVVLAN---QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL--KILSETFLKTNGI 146
           LV+ +   N   Q G P   W S +P  +  +      L   + L  +++ +  L   G+
Sbjct: 102 LVAAIARFNAQIQGGTP-ELWFSKLPPRIQET---LGPLLQDRRLWGELVQKAGLWVGGL 157

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI--- 203
                     G     Y  S+   +++ FF  RDG S+   L S      P   K+    
Sbjct: 158 VAAGSSGLLQGTATFLYEASL--ALVSTFFLVRDGASMVAYLGS--ALPLPGEQKRAFLE 213

Query: 204 -SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
            SR    ++RS   G+ +    + ++ G  +W+AG+P+ V  G +  +  M+P  G  + 
Sbjct: 214 RSR---DLLRSVLFGVLLTVALQAVLGGLGWWVAGLPNPVFSGFLMFLFGMVPLVGTALI 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +    +YLLI G+I     L LWGA+ +  VD+ LRP  + G    P      G++GG+ 
Sbjct: 271 WVPGGVYLLIAGHIKAGVLLLLWGALVVGSVDQFLRPLFISGRGGAPTFLVLLGILGGLS 330

Query: 322 TMGLLGLFIGPVLMALIAVI 341
             G LG+F+GP+ +AL  V+
Sbjct: 331 AWGFLGIFLGPLALALFLVV 350


>gi|323138131|ref|ZP_08073204.1| protein of unknown function UPF0118 [Methylocystis sp. ATCC 49242]
 gi|322396593|gb|EFX99121.1| protein of unknown function UPF0118 [Methylocystis sp. ATCC 49242]
          Length = 351

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 120/279 (43%), Gaps = 16/279 (5%)

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
           +F A ++ + V  + + PL F+    + E  E  + +    Q  +   +W+  +    W 
Sbjct: 70  SFGAALSVLIVALIIVGPLAFVSERLINEAVEGAAYI----QQEVTQGKWVDFLKAHPWL 125

Query: 120 SEL--WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
             +  W +     Q +      FL   G  FI +   +         L+++     LFFF
Sbjct: 126 ETVNNWIEGQFDLQDVLSRVGAFLTNAGALFIRQSTGQ--------ALTVLLSFYMLFFF 177

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            RD  +  + L  L         K I RI    I +   G   +A  +G + G  +W   
Sbjct: 178 LRDRKAGVEALLRLSPFSDIETRKLIVRI-RDTIYAIIYGTLAVAALQGALGGFIFWWLN 236

Query: 238 VPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
            PS V   +I  ++A++P  G  + +   +I+L I+G   +A  L LWG + +   D  +
Sbjct: 237 FPSPVFWALIMGLLAIVPVLGTFVVWVPATIFLAIEGRWADALTLGLWGGVVIASSDNLV 296

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
           RP L+   ++L   P F  ++GG++  G  GL +GP+ M
Sbjct: 297 RPLLISDTLRLHTAPAFIAMLGGIQLFGPSGLVLGPIAM 335


>gi|114570113|ref|YP_756793.1| hypothetical protein Mmar10_1563 [Maricaulis maris MCS10]
 gi|114340575|gb|ABI65855.1| protein of unknown function UPF0118 [Maricaulis maris MCS10]
          Length = 398

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 92/184 (50%), Gaps = 2/184 (1%)

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
           FL   L++  +I ALFFF   G   ++   +L      A      R +   IR+T  G  
Sbjct: 160 FLVATLNLFILIYALFFFLMTGRDAARSAVTLLPMTVEARELLAERAL-STIRATVKGSF 218

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNA 278
           +IA+ +G + G   ++AGVP  +    I A++++IP  G P+ +   +I+L   G+   A
Sbjct: 219 LIALVQGGLTGVGLFVAGVPGAIFWAAIAALLSIIPMIGPPLIWAPAAIWLAATGHPVAA 278

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             L  WGAI +   D  LRP LVG   K+  L      +GG+   G +G+ IGPV+ AL 
Sbjct: 279 GGLAAWGAIVVSTSDNILRPVLVGKDAKMSDLMVLISTLGGLTLFGAVGIIIGPVIAALF 338

Query: 339 AVIW 342
             +W
Sbjct: 339 TSVW 342


>gi|87312173|ref|ZP_01094276.1| probable permease [Blastopirellula marina DSM 3645]
 gi|87285098|gb|EAQ77029.1| probable permease [Blastopirellula marina DSM 3645]
          Length = 523

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 100/194 (51%), Gaps = 12/194 (6%)

Query: 175 FFFYRDG---FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
           ++F+ DG    S + +L  L +     Y +++     +V R+  L   + A+ +GL+ G 
Sbjct: 330 YYFFFDGPALISAAMRLSPLDDE----YERQLIEEFSQVSRAVVLATLLSALAQGLLAGI 385

Query: 232 AYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATC-LFLWGAIEL 289
            +W  G+ S   L  +T  +AM+P  GA   +  VS++L++      A   L ++G   +
Sbjct: 386 GFWFCGLESVFLLMFLTMTLAMVPFLGAASVWVPVSVWLIVAEERLAAGVGLAIYGVAVI 445

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI---WKESI 346
            +VD  ++PF++ G  KL  L     ++GGV  +G +G+ +GP+L+A + V+    +  +
Sbjct: 446 SLVDNIIKPFVLHGQSKLHPLLALLSVLGGVSALGPIGILVGPMLVAFMQVLLNMLRGEL 505

Query: 347 MAIKENKEKISSNF 360
           + + E ++   +N 
Sbjct: 506 VKMGEAEDAKDANL 519


>gi|308271896|emb|CBX28504.1| hypothetical protein N47_G38280 [uncultured Desulfobacterium sp.]
          Length = 350

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 142/316 (44%), Gaps = 13/316 (4%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           P++   +   ++ S   A+I+TV V+ + +VP++      + E ++L   +   +   I 
Sbjct: 45  PVHKYVLKVTKQRSGISALISTVFVITILLVPIILFGVQILNEAQQLYMSLAAGSTKKIV 104

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
                + I       E   +     + LK   + +LK      +      F  +      
Sbjct: 105 HETIYNLI-------EKTGRFFPAVKELKFDIDLYLKEGLGLLLSHIGGVFSNVAKLMIN 157

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK-ISRIVPKVIRSTFLGMTIIAIG 224
           S IF+  +L++ ++DG  + +   +L     P    + IS  +   I S   G  +IA+ 
Sbjct: 158 SFIFLT-SLYYLFKDGHKLKETFLNLSP--LPRNENELISNKLEGAINSVIKGNLVIALI 214

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFL 283
           +G++  + +   G+P+ +  G +T + A+IPG G  +      I+L + G I     L +
Sbjct: 215 QGVLSAAGFAFFGIPNAMFWGSVTTVSALIPGVGTSLVLIPAIIFLFLTGKIAPGFGLLV 274

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           WGA  + I+D  L P LVG  +++  +     ++GG+   G +G  +GP+ M+L    + 
Sbjct: 275 WGAGAVGIIDNFLGPKLVGQRMQVHPMLILLSVLGGIVFFGPIGFLLGPLTMSLFFAFF- 333

Query: 344 ESIMAIKENKEKISSN 359
           E   AI+ ++ + + N
Sbjct: 334 EIYSAIRLDQTENTDN 349


>gi|292488148|ref|YP_003531029.1| hypothetical protein EAMY_1671 [Erwinia amylovora CFBP1430]
 gi|292899359|ref|YP_003538728.1| membrane protein [Erwinia amylovora ATCC 49946]
 gi|291199207|emb|CBJ46322.1| putative membrane protein [Erwinia amylovora ATCC 49946]
 gi|291553576|emb|CBA20621.1| UPF0118 inner membrane protein ydiK [Erwinia amylovora CFBP1430]
 gi|312172286|emb|CBX80543.1| UPF0118 inner membrane protein ydiK [Erwinia amylovora ATCC
           BAA-2158]
          Length = 374

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 96/214 (44%), Gaps = 10/214 (4%)

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
           +T G  F    A  FG   +   L ++F ++     Y  G  + Q +      L      
Sbjct: 148 RTTGFFFAQ--AGHFGRFMMHLGLMLLFSVL----LYWRGEQVGQGIRHFAFRLASRRGD 201

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
               +  + IR+  LG+ + A+ +G++ G    ++G+P    L V+  +  ++  G  I 
Sbjct: 202 AAVLLAAQAIRAVALGVVVTALVQGVLGGIGLAISGIPFATILTVLMILSCLVQLGPLIV 261

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
                I+L   G+    T L +W  + +  +D  LRP L+     LP +    G++GG+ 
Sbjct: 262 LVPAIIWLYWSGDTTWGTVLLIWSCV-VGTLDNVLRPMLIRMGADLPMILILSGVIGGLV 320

Query: 322 TMGLLGLFIGPVLMAL---IAVIWKESIMAIKEN 352
             G++GLFIGPV++A+   +  +W     A  EN
Sbjct: 321 AFGMIGLFIGPVVLAISYRLVSVWVHETPAPHEN 354


>gi|289582606|ref|YP_003481072.1| hypothetical protein Nmag_2958 [Natrialba magadii ATCC 43099]
 gi|289532159|gb|ADD06510.1| protein of unknown function UPF0118 [Natrialba magadii ATCC 43099]
          Length = 339

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 84/154 (54%), Gaps = 7/154 (4%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSI 267
            V+ +  +G  +IAI EG++ G A +  G+P+      I  I++++P  GAP+ +   SI
Sbjct: 188 DVMWAVLVGHVLIAIIEGVIAGLALFAVGIPNAAFWTFIMVILSLVPLIGAPLVWIPASI 247

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           YL++ G    A  L ++ AI + + D  LRP +V    ++       G++GG+   G++G
Sbjct: 248 YLVVIGEPLLAAGLAVYSAIVVGVSDDYLRPVVVDRYAEISPAVIILGVLGGIYAFGIMG 307

Query: 328 LFIGPVLM-ALIAVIWKESIMAIKENKEKISSNF 360
           LF GPV++ ALI V     I  + E  ++++  +
Sbjct: 308 LFFGPVVVGALITV-----IEVLDEEYDRLAEEY 336


>gi|153003656|ref|YP_001377981.1| hypothetical protein Anae109_0785 [Anaeromyxobacter sp. Fw109-5]
 gi|152027229|gb|ABS24997.1| protein of unknown function UPF0118 [Anaeromyxobacter sp. Fw109-5]
          Length = 363

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 88/182 (48%), Gaps = 8/182 (4%)

Query: 166 SIIFMIIALFFFYRDGFSISQQLDS---LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
            ++ M+IALFF   DG  +   LD    L   L     +  S+    V+ +T L    I 
Sbjct: 160 QVVMMLIALFFMLVDGSRLVGWLDRHVPLRPGLLRELIEDFSKTSVSVLTAT-LATAGIQ 218

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCL 281
               LV    Y +A  P+ V   + T ++A++P  G       V + LL  G++   T L
Sbjct: 219 TATALV---GYLIARAPNLVFFTLATFVVALVPALGGAFMVVGVGLLLLATGHVLAGTFL 275

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             WGA  + ++D   RP+L+ G ++L     FF L+GG+ T G +GL +GP+++  +  +
Sbjct: 276 VAWGAAVVSLIDNVARPYLLKGGMELHGGIVFFALIGGLATFGGIGLVLGPLIVTFLLAV 335

Query: 342 WK 343
            K
Sbjct: 336 LK 337


>gi|312131790|ref|YP_003999130.1| hypothetical protein Lbys_3116 [Leadbetterella byssophila DSM
           17132]
 gi|311908336|gb|ADQ18777.1| protein of unknown function UPF0118 [Leadbetterella byssophila DSM
           17132]
          Length = 343

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 148/342 (43%), Gaps = 42/342 (12%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           Y+L GF A +   L I +  W  Y     +K  +    A++     +   ++PL  L  Y
Sbjct: 33  YYLPGFLAAI--TLYIVYREW--YFRLTEQKRWNKVLTALLFIFFSIVFIVLPLWGLIDY 88

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            +  +   +       Q    V  ++S  P       L    LS  ++L    ++  K  
Sbjct: 89  MIPRLSVFLDNTDSIMQKFNQVKEYMSKKP------VLENIDLSD-EALADFLQSLTK-- 139

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
              ++PR  +    + L+       M++A F  Y    S  ++L++   H FP  + ++S
Sbjct: 140 ---YLPRILNSVAEVLLN-------MLVAFFVLYFMLVS-GRKLENQLTHFFP--YSEVS 186

Query: 205 RI-----VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GA 258
           R      +  ++R+  +G+ I+ + +GLV    Y+L GV + V  G++T +  + P  G 
Sbjct: 187 RQELWSEIKLMVRTNAIGIPILGMCQGLVAMLGYYLFGVENAVLWGIVTGVATVFPVLGT 246

Query: 259 PISFTAVSIYLLIKGNIFNAT-----CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
              +  + I     G   NA      C FL G I     D  LR  L+     +  L T 
Sbjct: 247 MAVYVPICIVSFATGEWTNALWLTLYCFFLVGGI-----DNVLRFTLLKTLGNVHPLITV 301

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           FG++ G++  G+LGL  GP+L++ +AV++K  +      KEK
Sbjct: 302 FGVLLGLKLFGMLGLIFGPLLLSSVAVLFKVYLNEYGRPKEK 343


>gi|261350100|ref|ZP_05975517.1| conserved hypothetical protein [Methanobrevibacter smithii DSM
           2374]
 gi|288860886|gb|EFC93184.1| conserved hypothetical protein [Methanobrevibacter smithii DSM
           2374]
          Length = 348

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 158/341 (46%), Gaps = 39/341 (11%)

Query: 32  APVLSALIIG----FTSWPIYSSFISKKE--ESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           +PVL+ +I+G    +   P+     SK +    S FLAVI       L ++PL+ L  Y 
Sbjct: 28  SPVLNMVILGAILAYAIRPLARKITSKIKIRSVSIFLAVI-------LVMIPLVILIAYI 80

Query: 86  MLEMKELVSKVVLANQHGIP------VPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
           +  +  ++S V++ N  G        + + ++ +P  + +S + T  +    S       
Sbjct: 81  ISVISGVLSDVLVVNPSGFNLNLDTVINQMVNSLPADI-SSGIDTASIKSSLS------G 133

Query: 140 FLKTNG---IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           F+K  G   +D+I   AS+   I +D  L I+F   ++++F RDG +    ++S      
Sbjct: 134 FIKDIGNVVLDYIVSLASKLLSISVD--LFILFA--SIYYFIRDGDNCYDFVESFIPQES 189

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
             ++++    V +V++S F G  + ++  G++    Y L G    V LGV+T I  +IP 
Sbjct: 190 KDFFERTVNSVKEVLKSIFYGHFLTSLIIGIIAAVGYSLLGYSQGVFLGVLTGIFQLIPI 249

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
            G  PI +T ++I  LI GN      + L+G   L + D  +RP L      +  L    
Sbjct: 250 FGPWPIYWT-LAIVDLISGNYVRVVIVILFGFF-LSLSDMYIRPALSSHYADIHPLILLI 307

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G + G    G++G  +GP+++ +   +       I+ NK K
Sbjct: 308 GFLAGPLVYGIVGFILGPLILGITYAVLDN--FRIELNKSK 346


>gi|332112088|gb|EGJ12064.1| hypothetical protein RBXJA2T_17117 [Rubrivivax benzoatilyticus JA2]
          Length = 359

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 147/326 (45%), Gaps = 24/326 (7%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           SL+ LK F  P + A ++   +WP+     +    S      + T+ ++ LF VPL  L 
Sbjct: 23  SLWILKPFVGPTIWATMVVVATWPLMLRVQAALGGSRAAAVTVMTLLLVLLFAVPLA-LS 81

Query: 83  YYGMLEMKELVSKVV--LAN-QHGIPVPRWLSDIPGGMWASEL---WTKHLSHP-QSLKI 135
              ++E  + +++    LA  +     P WL  +P  M   +L   W + ++   + L +
Sbjct: 82  IATLVENADRIAQTARDLATWRPSREAPAWLLALP--MVGPKLAVAWEQAVAAGLEGLVV 139

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
             + +       F+      FG + L + L+++   +     Y  G     Q+ +    L
Sbjct: 140 RIQPYAGGFTRWFVGEIGD-FGSVALQFVLTVVIAAV----MYAQGEVFGAQVRAFAGRL 194

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                     +    IR   LG+ + A+ + ++ G    LAGVP     G++TA+M M+ 
Sbjct: 195 AGERGVGAVTLAADAIRGVALGVGVTAVVQAVLGGVGLALAGVPLA---GLLTALMFMLC 251

Query: 256 ----GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
               G  P+   A   ++L  G++     L +W AI +  +D  LRP L+     LP L 
Sbjct: 252 IAQIGALPVLLPAAG-WVLYGGDVGWGVFLLVWSAI-VGTLDNFLRPVLIRLGADLPLLL 309

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMAL 337
            F G++GG+   GL+G+F+GPV++A+
Sbjct: 310 IFAGVIGGLLAFGLVGIFVGPVVLAV 335


>gi|253989383|ref|YP_003040739.1| inner membrane protein [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253780833|emb|CAQ83995.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 369

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/345 (20%), Positives = 144/345 (41%), Gaps = 10/345 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            +I+ S + +K F    + A ++   +WP+     +           I T+ ++ LF++P
Sbjct: 22  LLIVTSFWVMKPFILGFVWAGMVVIATWPLLEKLQNSLWGKRWLAVAIMTLLLILLFVIP 81

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP--GGMWASELWTKHLSHPQSLKI 135
           ++ L    +     L++         +P   WLS IP  G    S  W   ++   ++ I
Sbjct: 82  IVLLVSSLLENSAPLIAWAKSPTNFQMPAMTWLSSIPLVGDKLYSG-WNSLITDGGNVLI 140

Query: 136 LS-ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
              + ++      F  + A+  G       L ++F ++     Y  G  ++  +      
Sbjct: 141 AKVQPYIGEAATWFFTQ-AANAGRFVFHLALMVLFSVL----LYLKGEQVTMSIRHFAVR 195

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L          +  + IR+  LG+ + A+ + ++ G    ++G+P    L V+  +  + 
Sbjct: 196 LADKRGDAAILLAAQSIRAVALGVVVTALVQAIIGGIGLAVSGIPYATLLTVLMFVCCVA 255

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G  +       +L   G+    T L +W  + +  +D  LRPFL+     LP      
Sbjct: 256 QIGPLLILVPAVAWLYWTGDTTWGTALLVWSCV-VTTMDGFLRPFLIRLGADLPMALILT 314

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G++GG+ + G++GLFIGPV++A+   +    +  I E K  ++  
Sbjct: 315 GVIGGILSFGMIGLFIGPVVLAVAYRLLIAWMNEIPEPKNDLTET 359


>gi|317047270|ref|YP_004114918.1| hypothetical protein Pat9b_1040 [Pantoea sp. At-9b]
 gi|316948887|gb|ADU68362.1| protein of unknown function UPF0118 [Pantoea sp. At-9b]
          Length = 367

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 163/355 (45%), Gaps = 28/355 (7%)

Query: 15  MIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           +I+ I+ V+ +  L  +F+ +  A I+     P+  S + +K      LA + T+ ++CL
Sbjct: 13  VILAIVTVAFFDVLTPYFSAIFWAAILAVIFHPL-KSLLRQKMGDRNGLASLVTLLIICL 71

Query: 74  FI-VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM--WASE-LWTKHLSH 129
            +  PL  +    ++E+  + +K+     +    P   +D+   +  WA   L   HL++
Sbjct: 72  IVFTPLAIVTSSLVVELNTVYNKL---QNNSSQFPTVFADLFQHLPDWARNYLSEHHLNN 128

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG-FSISQQL 188
              ++    +F    G  ++       G     + +    M+  LFF  +DG + ++  L
Sbjct: 129 AAQIQEKLSSFALKGG-QYMAGSVFVIGKGTFTFTVGFGVMLYLLFFLLKDGAWLVNLIL 187

Query: 189 DSL------GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           ++L        HL   +          V R+T  G  ++A+ +G++ G A+W+  +   +
Sbjct: 188 EALPLSTHVKHHLLLKF--------AAVSRATVKGTVVVAVVQGILGGLAFWITDIDGSL 239

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             G + A +++IP  G+ I +   +I+    G ++    L  +  + + +VD  LRP LV
Sbjct: 240 LWGALMAFLSLIPAIGSAIIWVPAAIFFFATGALWKGLFLVGFFVVVVGLVDNILRPLLV 299

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           G   K+P        +GG+   G+ G  IGP++ AL    W  ++++ ++N++ +
Sbjct: 300 GKDTKMPDYLILIATLGGMEVYGINGFVIGPLIAALFIACW--NLLSGRDNRDNV 352


>gi|222445339|ref|ZP_03607854.1| hypothetical protein METSMIALI_00967 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434904|gb|EEE42069.1| hypothetical protein METSMIALI_00967 [Methanobrevibacter smithii
           DSM 2375]
          Length = 348

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 158/341 (46%), Gaps = 39/341 (11%)

Query: 32  APVLSALIIG----FTSWPIYSSFISKKE--ESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           +PVL+ +I+G    +   P+     SK +    S FLAVI       L ++PL+ L  Y 
Sbjct: 28  SPVLNMVILGAILAYAIRPLARKITSKIKIRSVSIFLAVI-------LVMIPLVILIAYI 80

Query: 86  MLEMKELVSKVVLANQHGIP------VPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
           +  +  ++S V++ N  G        + + ++ +P  + +S + T  +    S       
Sbjct: 81  ISVISGVLSDVLVVNPSGFNLNLDTVINQMVNSLPADI-SSGIDTASIKSSLS------G 133

Query: 140 FLKTNG---IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           F+K  G   +D+I   AS+   I +D  L I+F   ++++F RDG +    ++S      
Sbjct: 134 FIKDIGNVVLDYIVSLASKLLSISVD--LFILFA--SIYYFIRDGDNCYDFVESFIPQES 189

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
             ++++    V +V++S F G  + ++  G++    Y L G    V LGV+T I  +IP 
Sbjct: 190 KDFFERTVNSVKEVLKSIFYGHFLTSLIIGIIAAVGYSLLGYSQGVFLGVLTGIFQLIPI 249

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
            G  PI +T ++I  LI GN      + L+G   L + D  +RP L      +  L    
Sbjct: 250 FGPWPIYWT-LAIIDLISGNYVRVVIVILFGFF-LSLSDMYIRPALSSHYADIHPLILLI 307

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G + G    G++G  +GP+++ +   +       I+ NK K
Sbjct: 308 GFLAGPLVYGIVGFILGPLILGITYAVLDN--FRIELNKSK 346


>gi|238757756|ref|ZP_04618939.1| hypothetical protein yaldo0001_35130 [Yersinia aldovae ATCC 35236]
 gi|238703999|gb|EEP96533.1| hypothetical protein yaldo0001_35130 [Yersinia aldovae ATCC 35236]
          Length = 367

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/349 (21%), Positives = 146/349 (41%), Gaps = 16/349 (4%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           IM +I+ S + ++ F      A ++   +WP+   F           A++ T+ ++ LF+
Sbjct: 21  IMIMIVSSFWVVQPFIMGFAWAGMVVIATWPLLIRFEKLLWGKRWLAAIVMTMLLILLFV 80

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP--GGMWASELWTKHLSHPQSL 133
           +P+  L    +     +++     ++   P   WL  IP  G    S   T       +L
Sbjct: 81  IPIALLVSSLVENSGPVIAWASSPSKLHFPEMNWLQSIPMIGSKLYSSWHTLVAGGGNAL 140

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS----QQLD 189
               + ++       + + A+  G   +   L ++F  +  F   + G  I     +  D
Sbjct: 141 LAKVQPYVGATATWLVAQ-AAHVGYFVIHLALMVLFSTLLYFHGEQVGLGIRHFAVRAAD 199

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
             G+         +  +  K IR+  LG+ + A+ + ++ G    +AG+     L V+  
Sbjct: 200 KRGD--------AVVVLAAKAIRAVALGVVVTALVQAVLGGIGLAIAGIQYATLLTVLMF 251

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I  +   G  +      I+L   G+    T L +W  I +  +D  LRP+L+     +P 
Sbjct: 252 ICCVAQLGPLLILVPAVIWLYWTGDTTWGTVLLVWSCI-VGTMDNVLRPYLIRMEADMPM 310

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +    G++GG+ + G++GLFIGPV++A+   +    +    E +E I  
Sbjct: 311 ILILSGVIGGLLSFGMIGLFIGPVVLAISYRLTSAWVNEAPEPEESIKD 359


>gi|149190146|ref|ZP_01868422.1| predicted permease [Vibrio shilonii AK1]
 gi|148836035|gb|EDL52996.1| predicted permease [Vibrio shilonii AK1]
          Length = 357

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 5/155 (3%)

Query: 193 EHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            H+ P    +  R+   + KV +S  +G  + AI +G   G   W+AG P  +  G +  
Sbjct: 188 RHILPFSRSQEDRLLNEIEKVSKSAVMGSFLTAIAQGAAGGFGMWMAGFPG-LFWGTMMG 246

Query: 250 IMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
             + IP  G  + +   + YLLI G+      L +W    +  +D  LRP L+ G   + 
Sbjct: 247 FASFIPVVGTALIWIPATAYLLITGDTTWGLFLAVWSIAVVGSIDNVLRPLLMQGSAGMN 306

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L  FF L+GG+   GL+GL  GP++ A+  V++ 
Sbjct: 307 TLMIFFSLLGGIHLFGLIGLIYGPLIFAITMVLFN 341


>gi|332161640|ref|YP_004298217.1| putative inner membrane protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318605868|emb|CBY27366.1| putative membrane protein [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325665870|gb|ADZ42514.1| putative inner membrane protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330861398|emb|CBX71629.1| UPF0118 inner membrane protein ydiK [Yersinia enterocolitica
           W22703]
          Length = 367

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 75/350 (21%), Positives = 147/350 (42%), Gaps = 18/350 (5%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           IM +I+ S + ++ F      A ++   +WP+               A+I T+ ++ LF+
Sbjct: 21  IMIMIIASFWVVQPFIMGFAWAGMVVIATWPLLIRLQKILWGKRWLAAIIMTILLVLLFV 80

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL---WTKHLSHPQS 132
           +P+  L    +     L+      +   +P   WL  IP  M  ++L   W   ++   +
Sbjct: 81  IPIALLVSSLVENSGPLIQWASSPSNLKMPDVTWLKSIP--MVGNKLYSGWHSLIAGGGN 138

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS----QQL 188
           + I            ++   A+  G   +   L ++F I+  F   + G  I     +  
Sbjct: 139 VLIAKIQPYVGAAATWLVAQAAHIGYFLIHLALMVLFSILLYFHGEQVGLGIRHFAVRAA 198

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D  G+         +  +  K IR+  LG+ + A+ + ++ G    +AG+       V+ 
Sbjct: 199 DKRGD--------AVVVLAAKAIRAVALGVVVTALVQAVLGGIGLAIAGIQYATLFTVLM 250

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I  +   G  +      I+L   G+    T L +W  I +  +D  LRP+L+     +P
Sbjct: 251 FICCVAQLGPLLILIPAVIWLYWTGDSTWGTILLVWSCI-VGTMDNVLRPYLIRMEADMP 309

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            +    G++GG+ + G++GLFIGPV++A+   +    +    E +E I+ 
Sbjct: 310 MILILSGVIGGLLSFGMIGLFIGPVVLAISYRLTSAWVNEAPEPEESITE 359


>gi|148643102|ref|YP_001273615.1| permease [Methanobrevibacter smithii ATCC 35061]
 gi|148552119|gb|ABQ87247.1| predicted permease [Methanobrevibacter smithii ATCC 35061]
          Length = 348

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 158/341 (46%), Gaps = 39/341 (11%)

Query: 32  APVLSALIIG----FTSWPIYSSFISKKE--ESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           +PVL+ +I+G    +   P+     SK +    S FLAVI       L ++PL+ L  Y 
Sbjct: 28  SPVLNMVILGAILAYAIRPLARKITSKIKIRSVSIFLAVI-------LVMIPLVILIAYI 80

Query: 86  MLEMKELVSKVVLANQHGIP------VPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
           +  +  ++S V++ N  G        + + ++ +P  + +S + T  +    S       
Sbjct: 81  ISVISGVLSDVLVVNPSGFNLNLDTVINQMVNSLPADI-SSGIDTASIKSSLS------G 133

Query: 140 FLKTNG---IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           F+K  G   +D+I   AS+   I +D  L I+F   ++++F RDG +    ++S      
Sbjct: 134 FIKDIGNVVLDYIVSLASKLLSISVD--LFILFA--SIYYFIRDGDNCYDFVESFIPQES 189

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
             ++++    V +V++S F G  + ++  G++    Y L G    V LGV+T I  +IP 
Sbjct: 190 KDFFERTVNSVKEVLKSIFYGHFLTSLIIGIIATVGYSLLGYSQGVFLGVLTGIFQLIPI 249

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
            G  PI +T ++I  LI GN      + L+G   L + D  +RP L      +  L    
Sbjct: 250 FGPWPIYWT-LAIVDLISGNYVRVVIVILFGFF-LSLSDMYIRPALSSHYADIHPLILLI 307

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G + G    G++G  +GP+++ +   +       I+ NK K
Sbjct: 308 GFLAGPLVYGIVGFILGPLILGITYAVLDN--FRIELNKSK 346


>gi|291617264|ref|YP_003520006.1| YdiK [Pantoea ananatis LMG 20103]
 gi|291152294|gb|ADD76878.1| YdiK [Pantoea ananatis LMG 20103]
          Length = 376

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/331 (19%), Positives = 140/331 (42%), Gaps = 19/331 (5%)

Query: 37  ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV 96
           A ++   +WP+            +   ++ T+ ++ LFI+P+  L    +     +++  
Sbjct: 51  ASMVVIATWPLMLKIQRLLWGRRSLAVIVMTILLLLLFIIPVALLVNSLIDNSAPVIAWA 110

Query: 97  VLANQHGIPVPRWLSDIPGGMWASELWTKHLS-----HPQSLKILSETFLKTNGIDFIPR 151
                H +P   WL+DIP  M   +L+  +           +  L     +T G  F+ R
Sbjct: 111 --TQGHMLPTLNWLNDIP--MVGEKLYASYQKLVAGGGAAIMAKLQPYVGRTTG--FLWR 164

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                 +  +   + ++F ++     Y  G   +Q +      +          +  + +
Sbjct: 165 RPGTLAVFMIHLAVMLLFSVL----LYWRGEQAAQGIRHFAWRMAGRRGDAAVLLAGQAV 220

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R+  LG+ + A+ +G++ G    ++G+P    L V+  +  ++  G  +      +YL  
Sbjct: 221 RAVALGVVVTALVQGVLGGIGLAVSGIPYATLLTVLMILCCLVQIGPLLVLVPAIVYLYW 280

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
            G+    T L +W  + +  +D  LRP L+     LP +    G++GG+   G++GLFIG
Sbjct: 281 SGDTTWGTVLLIWSCV-VGTLDNILRPVLIRMGADLPLILILSGVIGGLIAFGMIGLFIG 339

Query: 332 PVLMAL---IAVIWKESIMAIKENKEKISSN 359
           PV++A+   +  +W   + A + +   + S 
Sbjct: 340 PVVLAVSYRLVSVWMHEVPAPQADPLSVVSE 370


>gi|21958751|gb|AAM85497.1|AE013795_7 hypothetical protein y1931 [Yersinia pestis KIM 10]
 gi|45436849|gb|AAS62402.1| putative membrane protein [Yersinia pestis biovar Microtus str.
           91001]
          Length = 382

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/347 (19%), Positives = 148/347 (42%), Gaps = 12/347 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           IM +I+ S + ++ F      A ++   +WP+            +   V+ T+ ++ LF+
Sbjct: 36  IMGMIIASFWVIQPFVMGFAWAGMVVIATWPLLIRLEKLLWGRRSLAVVVMTILLILLFV 95

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP---GGMWASELWTKHLSH-PQ 131
           +P+  L    +     L+      +   +P   W+  IP     +++S  W   +S    
Sbjct: 96  IPIALLVSSLVENSAPLIQWASSPSNLRMPNVDWMKSIPLIGDKLYSS--WNTLISGGAN 153

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +L    + ++      F+ + A+  G   +   L ++F ++     Y  G  ++  +   
Sbjct: 154 ALMAKVQPYIGATATWFVAQ-AAHVGYFLIHLALMVLFSVL----LYIHGEQVALGIRHF 208

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                      +  +  K IR+  LG+ + A+ + ++ G    +AG+     L V+  I 
Sbjct: 209 AMRAADKRGDAVVVMAAKAIRAVALGVVVTALVQAILGGIGLAIAGIQYATLLTVLMFIC 268

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +   G  +      I++   G+    T L +W  I +  +D  LRP+L+     +P + 
Sbjct: 269 CVAQLGPLLVLVPAVIWVYWTGDTTWGTILLVWSCI-VGTLDNFLRPYLIRMEADMPMIL 327

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
              G++GG+ + G++GLFIGPV++A+   +    +    E +E ++ 
Sbjct: 328 ILSGVIGGLLSFGMIGLFIGPVVLAISYRLISAWVHETPEPEESVTD 374


>gi|269103476|ref|ZP_06156173.1| predicted permease [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268163374|gb|EEZ41870.1| predicted permease [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 362

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 161/363 (44%), Gaps = 59/363 (16%)

Query: 13  RWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
            WM++  ++++ Y     ++ +  P++ A+II     P++     K   S    ++++  
Sbjct: 11  HWMLVVALVIAGYASYRIIEPYLGPIIMAVIISLLCHPMHEKIRGKMPGSPNIASLLSCT 70

Query: 69  SVMCLFIVPLLFLF----YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            +  + ++P+L +F    + G    KE  +              WL+D  GG  A EL+ 
Sbjct: 71  LLTFIIMIPMLVVFSSIVHQGTTFSKESYT--------------WLTD--GG--AKELF- 111

Query: 125 KHLSHPQSLK--ILSETFLKTNGID------FIPRFASRFGMIFLD-----------YCL 165
              +HP   K   L + +     ID       I   AS+ G   L+           + +
Sbjct: 112 ---AHPYVQKSFALIDKYSPFKSIDPQEVLQKIASIASQLGSTLLNVSTKLLGDVTNFLM 168

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI---VPKVIRSTFLGMTIIA 222
           S I M+  LFF  RD      ++ +   ++ P    +   +   V  V +S  LG  + A
Sbjct: 169 SFILMLFVLFFLLRD----HDKMVATVRNVLPLSRSQEDALFSEVQTVAKSAVLGSFMTA 224

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCL 281
           + +G+  G A WL G P  +  G + A  + IP  G  + +   ++YLL+ G    A  L
Sbjct: 225 LAQGVAGGFAMWLCGFPG-LFWGSMMAFASFIPVVGTALIWVPATLYLLLLGQWEWALFL 283

Query: 282 FLWGAIELFIVDKTLRPFLV-GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
             WG I +  +D  LRP L+ GG   +  L  FF ++GG++  GL+GL  GP++  +  V
Sbjct: 284 TGWGIIVVGSIDNVLRPLLMQGGDSNMNTLLIFFSILGGLQLFGLIGLIYGPIIFGVTLV 343

Query: 341 IWK 343
           ++K
Sbjct: 344 LFK 346


>gi|163782562|ref|ZP_02177559.1| hypothetical protein HG1285_16800 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882135|gb|EDP75642.1| hypothetical protein HG1285_16800 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 355

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 159/341 (46%), Gaps = 22/341 (6%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +++F I  ++  L  F  P+L A++IG   +P++  +I K   + T  A++ ++ V    
Sbjct: 14  LVLFFIFAAVLMLLPFAVPILWAVVIGIVLYPLHR-YIEKVVRNRTLSALLMSLIVFLFI 72

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQ-HGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           IVPL  +    + ++ +   +V++  Q H     + L +  G     + + +  S P   
Sbjct: 73  IVPLSVVSVLVLQQLVDATQRVMMYLQSHSY---QELLETLGKSPVVKDYFERFS-PVME 128

Query: 134 KILSETF--LKTNGIDFIPRF-ASRFGMIFL---DYCLSIIFMIIALFFFYRDGFSISQQ 187
            +  E F  L  + ++ + +F   + G +          I   ++  FF  RDG  I ++
Sbjct: 129 FVQKEEFRQLIADSLNRVLKFLGDKLGQLAFIAGRNLFYIFVFLLTFFFILRDGPGILRR 188

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG----SAYWLAGVPSHVA 243
           +    E L P   + +  ++  + R T L +   ++G  L+       AY + G+   + 
Sbjct: 189 V----ERLIPMNDEDLESVMATMYR-TILAVVYGSVGTALLQSIFAFFAYSVVGIRFALL 243

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
             V+T   A IP  GA   +  +++Y  I+   + A  L  WG + +  +D  +RP ++ 
Sbjct: 244 WSVLTFFAAFIPPFGASAVWFPLAVYSFIEFGTWQAAFLGAWGVLVISSMDNFVRPLIIK 303

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             +++P++  FF  +GG+   G +GLF+GP++   +  ++K
Sbjct: 304 QGVQIPYVVLFFATIGGLLKFGFIGLFLGPIIFTTLFALFK 344


>gi|322372142|ref|ZP_08046683.1| hypothetical protein ZOD2009_21617 [Haladaptatus paucihalophilus
           DX253]
 gi|320548151|gb|EFW89824.1| hypothetical protein ZOD2009_21617 [Haladaptatus paucihalophilus
           DX253]
          Length = 331

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 160/341 (46%), Gaps = 32/341 (9%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +G + ++I    +++   +K F   VL+A+++G+   P+ + F S+     + L++
Sbjct: 1   MNRQRGFLLFLIAVFGVLATLLVKPFLQYVLAAILLGYILHPVQTRFESRVSARVSALSL 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           I+  +++   IVP+  +      +   LV  +V  +      PR+   I       E +T
Sbjct: 61  ISLTTLVV--IVPVGAIAVIAAQQAFTLVRAIVQGD------PRFAELIA----LVERYT 108

Query: 125 KHLSHPQSLKIL----SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
               H ++L+ L    S + L  N +         FG +  D  + +  M+  L++   D
Sbjct: 109 GVTIHGRTLQELLPAGSSSRLIENALGI-------FGGLS-DALIGLTVMVFILYYLLTD 160

Query: 181 GFSIS---QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
           G       ++   L + +    + ++ R++  V+    +G  ++ I +G++ G  + +AG
Sbjct: 161 GEEFVAWIRRCTPLPDDVQDELYSEMDRVMWGVL----VGNLLVGIVQGILTGIGFVIAG 216

Query: 238 VPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           VP  V   V+T +++++P  GA + +   S+YL +      A  LF++G + + + D  L
Sbjct: 217 VPGVVFWTVVTTVLSLLPLIGASVVWLPASLYLFLVDRPIAAAFLFVYGTLVVSLSDNYL 276

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           RP + G   KL       G+ GGV   G +GLF GP+++ +
Sbjct: 277 RPLVSGHEAKLNPGILVVGIFGGVYVFGFMGLFFGPIVLGI 317


>gi|292491658|ref|YP_003527097.1| hypothetical protein Nhal_1573 [Nitrosococcus halophilus Nc4]
 gi|291580253|gb|ADE14710.1| protein of unknown function UPF0118 [Nitrosococcus halophilus Nc4]
          Length = 358

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 135/300 (45%), Gaps = 36/300 (12%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           Y +    A + +AL+     +P+Y+  +          +VI  V V+ +F++ L  L   
Sbjct: 34  YLIALLLAIIFTALL-----YPVYNQVLRILHGRRALSSVI--VLVLAIFVIGLPLLGLL 86

Query: 85  GMLEMKEL-VSKVV-------LANQHGI--PVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           G +  + + +S+ V       L +QH +   +P W             +++ L   +S  
Sbjct: 87  GAVAAEAVQISESVEPWLEKKLPDQHDLSRDIPEWFP-----------FSEQLEPYKSRI 135

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR---DGFSISQQLDSL 191
           I     L  N  +F+ +  S      +++ +    M+ A+FFF     D  ++  +   L
Sbjct: 136 IAKGGELAGNAGEFLAKSISAVTQGTINFIVKFFIMLYAMFFFLMWGPDSLTVLMRYIPL 195

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
            E       +K   I   +++S      +I + +G+++G A+W+AG+   +  G I  ++
Sbjct: 196 TEKDRSLLLEKGLAITKAILKSIL----VIGVLQGILVGLAFWVAGLKGAIFWGAIVVVL 251

Query: 252 AMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + IPG GAP+ +    IYL + G    A  + LWG+I +  VD  LRP +VG   K+P L
Sbjct: 252 SAIPGLGAPLIWIPAVIYLALSGQTGWAIGMTLWGSIIVGSVDNILRPHIVGSEAKMPDL 311


>gi|51596641|ref|YP_070832.1| inner membrane protein [Yersinia pseudotuberculosis IP 32953]
 gi|149365682|ref|ZP_01887717.1| putative membrane protein [Yersinia pestis CA88-4125]
 gi|153950534|ref|YP_001400713.1| inner membrane protein [Yersinia pseudotuberculosis IP 31758]
 gi|161484817|ref|NP_669246.2| putative inner membrane protein [Yersinia pestis KIM 10]
 gi|161511367|ref|NP_993525.2| putative inner membrane protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|162100171|ref|YP_651663.2| putative inner membrane protein [Yersinia pestis Antiqua]
 gi|162139438|ref|YP_647791.2| putative inner membrane protein [Yersinia pestis Nepal516]
 gi|165927526|ref|ZP_02223358.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165939531|ref|ZP_02228077.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011791|ref|ZP_02232689.1| putative membrane protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166210661|ref|ZP_02236696.1| putative membrane protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167400956|ref|ZP_02306462.1| putative membrane protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167422187|ref|ZP_02313940.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167424857|ref|ZP_02316610.1| putative membrane protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167469404|ref|ZP_02334108.1| putative inner membrane protein [Yersinia pestis FV-1]
 gi|170024083|ref|YP_001720588.1| hypothetical protein YPK_1844 [Yersinia pseudotuberculosis YPIII]
 gi|186895697|ref|YP_001872809.1| hypothetical protein YPTS_2391 [Yersinia pseudotuberculosis PB1/+]
 gi|218929498|ref|YP_002347373.1| putative inner membrane protein [Yersinia pestis CO92]
 gi|229837932|ref|ZP_04458091.1| predicted inner membrane protein [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229895092|ref|ZP_04510268.1| predicted inner membrane protein [Yersinia pestis Pestoides A]
 gi|229898493|ref|ZP_04513638.1| predicted inner membrane protein [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229902336|ref|ZP_04517456.1| predicted inner membrane protein [Yersinia pestis Nepal516]
 gi|270490484|ref|ZP_06207558.1| putative membrane protein [Yersinia pestis KIM D27]
 gi|294503589|ref|YP_003567651.1| hypothetical protein YPZ3_1479 [Yersinia pestis Z176003]
 gi|51589923|emb|CAH21555.1| putative membrane protein [Yersinia pseudotuberculosis IP 32953]
 gi|115348109|emb|CAL21036.1| putative membrane protein [Yersinia pestis CO92]
 gi|149292095|gb|EDM42169.1| putative membrane protein [Yersinia pestis CA88-4125]
 gi|152962029|gb|ABS49490.1| putative membrane protein [Yersinia pseudotuberculosis IP 31758]
 gi|165912580|gb|EDR31211.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165920581|gb|EDR37858.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989256|gb|EDR41557.1| putative membrane protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207841|gb|EDR52321.1| putative membrane protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166958999|gb|EDR56020.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167049809|gb|EDR61217.1| putative membrane protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167056044|gb|EDR65822.1| putative membrane protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169750617|gb|ACA68135.1| protein of unknown function UPF0118 [Yersinia pseudotuberculosis
           YPIII]
 gi|186698723|gb|ACC89352.1| protein of unknown function UPF0118 [Yersinia pseudotuberculosis
           PB1/+]
 gi|229680671|gb|EEO76767.1| predicted inner membrane protein [Yersinia pestis Nepal516]
 gi|229688041|gb|EEO80112.1| predicted inner membrane protein [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229694298|gb|EEO84345.1| predicted inner membrane protein [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229701854|gb|EEO89877.1| predicted inner membrane protein [Yersinia pestis Pestoides A]
 gi|262361631|gb|ACY58352.1| hypothetical protein YPD4_1444 [Yersinia pestis D106004]
 gi|262365627|gb|ACY62184.1| hypothetical protein YPD8_1501 [Yersinia pestis D182038]
 gi|270338988|gb|EFA49765.1| putative membrane protein [Yersinia pestis KIM D27]
 gi|294354048|gb|ADE64389.1| hypothetical protein YPZ3_1479 [Yersinia pestis Z176003]
 gi|320015062|gb|ADV98633.1| putative inner membrane protein [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 367

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 69/347 (19%), Positives = 148/347 (42%), Gaps = 12/347 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           IM +I+ S + ++ F      A ++   +WP+            +   V+ T+ ++ LF+
Sbjct: 21  IMGMIIASFWVIQPFVMGFAWAGMVVIATWPLLIRLEKLLWGRRSLAVVVMTILLILLFV 80

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP---GGMWASELWTKHLSH-PQ 131
           +P+  L    +     L+      +   +P   W+  IP     +++S  W   +S    
Sbjct: 81  IPIALLVSSLVENSAPLIQWASSPSNLRMPNVDWMKSIPLIGDKLYSS--WNTLISGGAN 138

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +L    + ++      F+ + A+  G   +   L ++F ++     Y  G  ++  +   
Sbjct: 139 ALMAKVQPYIGATATWFVAQ-AAHVGYFLIHLALMVLFSVL----LYIHGEQVALGIRHF 193

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                      +  +  K IR+  LG+ + A+ + ++ G    +AG+     L V+  I 
Sbjct: 194 AMRAADKRGDAVVVMAAKAIRAVALGVVVTALVQAILGGIGLAIAGIQYATLLTVLMFIC 253

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +   G  +      I++   G+    T L +W  I +  +D  LRP+L+     +P + 
Sbjct: 254 CVAQLGPLLVLVPAVIWVYWTGDTTWGTILLVWSCI-VGTLDNFLRPYLIRMEADMPMIL 312

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
              G++GG+ + G++GLFIGPV++A+   +    +    E +E ++ 
Sbjct: 313 ILSGVIGGLLSFGMIGLFIGPVVLAISYRLISAWVHETPEPEESVTD 359


>gi|255536614|ref|YP_003096985.1| hypothetical protein FIC_02490 [Flavobacteriaceae bacterium
           3519-10]
 gi|255342810|gb|ACU08923.1| membrane protein, putative [Flavobacteriaceae bacterium 3519-10]
          Length = 367

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 75/132 (56%), Gaps = 1/132 (0%)

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAV 265
           + K++ +  +G+ ++AIG+G+V    Y++   PS + L  +TA+ +MIP  GA I +  V
Sbjct: 201 IRKMVIANAIGIPVVAIGQGIVAVIGYFIFDAPSAILLFALTAVASMIPIVGAAIVYVPV 260

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            I+++ +GN      L  +  + + + D  LR  L+     +  L T FG++ G++  G 
Sbjct: 261 CIFMIAEGNTGQGLGLAAYCMVAVGLTDNLLRFTLLKRLENIHPLNTVFGIIVGMKIFGF 320

Query: 326 LGLFIGPVLMAL 337
           +GL  GP+L+++
Sbjct: 321 MGLIFGPILVSI 332


>gi|269102539|ref|ZP_06155236.1| putative membrane protein [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268162437|gb|EEZ40933.1| putative membrane protein [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 371

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 153/358 (42%), Gaps = 36/358 (10%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +++ +I+ +   +K F  PVL   II     P+     +  +      A +  +  + L 
Sbjct: 22  LLLVLIIWTYDIVKPFIIPVLWGAIIAVALMPLTDKLQAVFKGRRGLAATVIALVCIALL 81

Query: 75  IVPLLFL---FYYGMLEMKELVSKVVLANQHGIPVP-RWLSDIPG-GMWASELWTKHLSH 129
           I P + +    Y G+         V+ +    IP P + ++DIP  G    E+W+     
Sbjct: 82  IAPFVMVSGSIYDGITHTMS----VLQSGDIKIPGPTQRIADIPVVGDKIYEVWS----- 132

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGM---IFLDYCLSIIFMIIALFF---FYRDGFS 183
                 L  T ++    +F+P   +  G    I      S++  IIAL     F      
Sbjct: 133 ------LFATNMEKAVTNFLPEIKTAVGTLASILGSSLASLVVFIIALAVAGGFMTHSHK 186

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH-- 241
           I++ +  +          K + +    IRS  LG+  +A  + +++GSA +   VP    
Sbjct: 187 ITEAIQKVSIRTVGKNGAKWTTLTAATIRSVLLGVVGVAFIQAMIIGSAMFAFHVPMAGL 246

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           + LGV+   +A +P  A I    V  Y+   G+  + T   +W A+   + D  L+P L+
Sbjct: 247 LTLGVLILCIAQLP--ALIVIAPVIFYVYSTGDGTSTTIFTIW-ALAGGLADNILKPMLM 303

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA-IKENKEKISS 358
           G  + +P      G +GG+   G++GLF+G V++A    IW E  MA +K + E   +
Sbjct: 304 GRGVDVPMPVILIGAIGGMLFSGIIGLFLGAVILA----IWYELFMAWLKADAETTQA 357


>gi|329296193|ref|ZP_08253529.1| putative inner membrane protein [Plautia stali symbiont]
          Length = 370

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 118/267 (44%), Gaps = 19/267 (7%)

Query: 99  ANQHGIPVPR--WLSDIPGGMWASELWTKH--LSHPQSLKILSET---FLKTNGIDFIPR 151
           A Q  + +P   WL DIP      +L++ +  L       I+S+      +T G  F   
Sbjct: 100 ATQRHLVLPDLAWLRDIPYA--GRKLYSSYHKLIDGGGAAIMSQVQPYIGRTTG--FFVA 155

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
            A  FG   L   L ++F ++  +   + G  I      +G     A       +  + I
Sbjct: 156 QAGHFGRFMLHLALMLLFSVLLYWRGEQVGLGIRHFAYRMGGRRGDAA----VLLAGQAI 211

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R+  LG+ + A+ +G++ G    ++G+P    L V+  +  ++  G  I      I+L  
Sbjct: 212 RAVALGVVVTALVQGVLGGIGLAISGIPYATLLTVLMILTCLVQLGPLIVLVPAIIWLYW 271

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
            G+    T L +W  + +  +D  LRP L+     LP +    G++GG+   G++GLFIG
Sbjct: 272 SGDTTWGTVLLVWSCV-VGTLDNVLRPMLIRMGADLPMILILSGVIGGLIAFGMIGLFIG 330

Query: 332 PVLMAL---IAVIWKESIMAIKENKEK 355
           PV++A+   +  +W     A  ++ E 
Sbjct: 331 PVVLAVSYRLVSVWMHEAPAPDDDPET 357


>gi|21672406|ref|NP_660473.1| putative inner membrane protein [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25091630|sp|Q8KA12|Y115_BUCAP RecName: Full=UPF0118 membrane protein BUsg_115
 gi|21623015|gb|AAM67684.1| hypothetical 39.8 kDa protein [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 364

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 90/189 (47%), Gaps = 9/189 (4%)

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
           Y +G  IS  +      L     + I  +  + +R+  LG+ + A+ + ++ G    ++G
Sbjct: 178 YWNGEKISNSIRQFASRLSSRNGEAIVLLSVQAVRAVALGVVVTALIQAVLSGIGLLISG 237

Query: 238 VPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           VP    L ++     +I  G  PI   +V I+L    N    T L +W    +FI+D  L
Sbjct: 238 VPYWTLLMILIVFSCLIQLGPLPILIPSV-IWLYWNSNTTWGTLLLIWSCF-VFILDNIL 295

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA-----LIAVIWKESIMAIKE 351
           RPF +     LP      G++GG+   G++GLFIGPV++      +++ I+  SI +  E
Sbjct: 296 RPFFIRIGSDLPTFLILLGVIGGLLAFGMIGLFIGPVVLVILYRLIVSWIYGISIASFLE 355

Query: 352 NKE-KISSN 359
           N   K  SN
Sbjct: 356 NTTLKSKSN 364


>gi|205352916|ref|YP_002226717.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205272697|emb|CAR37611.1| lipoprotein [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|326627989|gb|EGE34332.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 372

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 80/152 (52%), Gaps = 6/152 (3%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
           + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  ++  G  P+   A+ I
Sbjct: 209 QAIRAVALGVVVTALVQAVLGGVGLAISGVPYATLLTVVMILSCLVQLGPLPVLIPAI-I 267

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +L   G+    T L +W A+ +  +D  +RP L+     LP LP   G++GG+   G++G
Sbjct: 268 WLYWTGDTTWGTVLLVWSAV-VGTLDNVIRPVLIRMGADLPLLPILSGVIGGLIAFGMIG 326

Query: 328 LFIGPVLMALIAVI---WKESIMAIKENKEKI 356
           LFIGPVL+A+   +   W   + A     E+I
Sbjct: 327 LFIGPVLLAVTWRLFSAWVHEVPAPTNEPEEI 358


>gi|304315341|ref|YP_003850488.1| hypothetical protein MTBMA_c15960 [Methanothermobacter marburgensis
           str. Marburg]
 gi|302588800|gb|ADL59175.1| conserved hypothetical protein [Methanothermobacter marburgensis
           str. Marburg]
          Length = 335

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 96/196 (48%), Gaps = 9/196 (4%)

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
            L +   + + F+F RDG  +   +  +       + ++++    +V+ S F G  + A+
Sbjct: 143 ALQLFIFLSSTFYFARDGERLLSYIRGIIPTEAKPFMRRMASETERVLMSIFYGHFLTAL 202

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLF 282
             G++ G  + L G P  + LG+IT I  +IP   P  ++T ++IY L+ GNI     + 
Sbjct: 203 LIGIMAGLGFHLLGYPYAIVLGIITGIFQLIPVIGPWAAYTPLAIYDLVTGNILRGVLVL 262

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM-----AL 337
           ++G I L  +D  LRP L G    +  +    G +GG    G+ G  +GP+++     AL
Sbjct: 263 IFG-IFLSTIDIYLRPKLSGKYADIHPMIFLVGFLGGPVVWGVAGFIVGPLVLGLAYAAL 321

Query: 338 IAVIWKESIMAIKENK 353
            A    ES  A +EN+
Sbjct: 322 EAYRLGES--AAEENQ 335


>gi|146311402|ref|YP_001176476.1| putative inner membrane protein [Enterobacter sp. 638]
 gi|145318278|gb|ABP60425.1| protein of unknown function UPF0118 [Enterobacter sp. 638]
          Length = 371

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 72/328 (21%), Positives = 142/328 (43%), Gaps = 14/328 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           II+  L+ ++ F      A  +   +WP++           +   V+ T+ +  +FI+P+
Sbjct: 23  IIIACLWIVRPFVLGFAWAGTVVIATWPLFIRLQKLLFGRRSLAVVVMTLFLFLVFIIPI 82

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQSLKILS 137
             L    +++    V + V + +  IP   WL+ +P  G      W   L    S  I++
Sbjct: 83  ALLVN-SLVDTSGPVIRSVTSGEMTIPDLAWLNSVPVIGAKLYSGWHSLLEMGGS-AIMT 140

Query: 138 ET--FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +   ++ T    F+ + A+  G   +   L ++F  +     Y  G  ++  +      L
Sbjct: 141 KVRPYIGTTTTWFVGQ-AAHVGRFVMHCALMLVFSAL----LYWRGEQVALGVRHFATRL 195

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                     +  + +R+  LG+ + A+ + ++ G    ++GVP      VI  +  ++ 
Sbjct: 196 AGQRGDAAVLLAGQAVRAVALGVVVTALVQAVLGGIGLAISGVPYATIFTVIMILTCLVQ 255

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G  +      I+L   G+    T L +W  + +  +D  +RP L+     LP +    G
Sbjct: 256 LGPLLVLIPCIIWLYWSGDTTWGTVLLVWSCV-VGTMDNVIRPMLIRMGADLPLILILSG 314

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           ++GG+   G++GLFIGPVL+   AV W+
Sbjct: 315 VIGGLIAFGMIGLFIGPVLL---AVTWR 339


>gi|260771194|ref|ZP_05880121.1| predicted permease [Vibrio furnissii CIP 102972]
 gi|260613791|gb|EEX38983.1| predicted permease [Vibrio furnissii CIP 102972]
 gi|315179200|gb|ADT86114.1| Predicted permease [Vibrio furnissii NCTC 11218]
          Length = 361

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 150/343 (43%), Gaps = 20/343 (5%)

Query: 13  RWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
            W+++  +L + +     +K +   ++ A II    +PI+    +K        ++++ +
Sbjct: 11  HWVLIVALLAAAFTCYLLVKPYVNSIVMAFIISLLMFPIHEKLEAKLPSHKNLASLLSCI 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG----IPVPRWLSDIPGGMWASELWT 124
            +  + ++PLLF+F   + +  +    V     HG    +    W+  + G   A+    
Sbjct: 71  ILTFIIVIPLLFVFGAIVQQGSKFSQNVYQWVTHGGIQTVFNHPWV--VKGLSLANHYLP 128

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                PQ +         + G + +   A   G    ++ ++ + M+  LFF  RD   I
Sbjct: 129 FDEIQPQQIAQKVGQLATSFGSNLVGISAKILGDA-TNFIMNFLLMLFVLFFLLRDHDKI 187

Query: 185 SQQLDSLGEHLFP---AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
              +     H+ P   +   K+   + +V +S  +G  + AI +G   G   W+AG P  
Sbjct: 188 ITAI----RHILPLSRSQEDKLLSEIEQVSKSAVMGSFLTAIAQGAAGGFGMWMAGFPG- 242

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +  G +    + IP  G  + +   +IYL + G+   A  L +W    +  +D  LRP L
Sbjct: 243 LFWGTMMGFASFIPLVGTALIWIPATIYLFLIGDTTWAIFLGVWSVAVVGSIDNLLRPLL 302

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           + G   +  L  FF L+GG++  GL+GL  GP++ A+  V++ 
Sbjct: 303 MQGSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFN 345


>gi|212702630|ref|ZP_03310758.1| hypothetical protein DESPIG_00658 [Desulfovibrio piger ATCC 29098]
 gi|212673902|gb|EEB34385.1| hypothetical protein DESPIG_00658 [Desulfovibrio piger ATCC 29098]
          Length = 367

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 132/308 (42%), Gaps = 45/308 (14%)

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           F AV+  +S + L + P +     G+  ++EL      AN   +P P W+      M   
Sbjct: 85  FSAVVIPISTLVLLVSPQV---AGGLARLRELQ-----ANNFQLP-PEWV------MRFQ 129

Query: 121 ELWTKHLSHPQSLKILSE-------------TFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
           EL      +P+  K++SE               L    +D +    +    +FL   L++
Sbjct: 130 ELRHSLADYPKVDKMISEFLSNLDAMLADTMGLLINRSVDVLGGTMTVLWTLFLFVTLTV 189

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           IF   A         S    + +   H+     ++    + + ++   LG+ ++AI +G+
Sbjct: 190 IFAAYA---------SRINLITARIFHIPATMLRRFVLAIRRALQGVMLGIVLVAIAQGV 240

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           + G  + +AG+      G++  ++A IP  G  + +  + + L   G    A  L LWG 
Sbjct: 241 LCGIGFAVAGIKQPAFWGLLATVVAPIPFVGTALVWGPLCLSLWFSGATMPAVGLALWGT 300

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           + +  VD  LRP  +   I  PF      ++ G+ + G +GL IGPVL+A+       ++
Sbjct: 301 LAVTSVDNILRPLFLQQGINAPFFVLIIAILCGLGSFGPMGLIIGPVLLAI-------AM 353

Query: 347 MAIKENKE 354
            A++E  +
Sbjct: 354 QAVEEAHQ 361


>gi|238791674|ref|ZP_04635311.1| hypothetical protein yinte0001_13870 [Yersinia intermedia ATCC
           29909]
 gi|238728778|gb|EEQ20295.1| hypothetical protein yinte0001_13870 [Yersinia intermedia ATCC
           29909]
          Length = 367

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 78/358 (21%), Positives = 154/358 (43%), Gaps = 28/358 (7%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA-TVSVMCLF 74
           IM +I+ S + ++ F      A ++   +WP+    + K      +LAVI  T+ ++ LF
Sbjct: 21  IMIMIIASFWVVQPFIMGFAWAGMVVIATWPLLIR-LQKLLWGKRWLAVIVMTLLLILLF 79

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP--GGMWASELWTKHLSHPQS 132
           ++P+  L    +     L+      +   +P   WL  IP  G    S   T       +
Sbjct: 80  VIPIALLVSSLVENSGPLIQWASSPSNLRMPDVTWLQSIPMVGNKLYSSWHTLVAGGGNA 139

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS----QQL 188
           +    + ++       + + A+  G   +   L ++F ++  F   + G  I     +  
Sbjct: 140 MIAKVQPYIGAAATWLVAQ-AAHVGYFLIHLALMVLFSVLLYFHGEQVGLGIRHFAVRAA 198

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D  G+         +  +  K IR+  LG+ + A+ + ++ G    +AG+       V+ 
Sbjct: 199 DKRGD--------GVVVLAAKAIRAVALGVVVTALVQAVLGGIGLAIAGIQYATLFTVLM 250

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I  +   G  +      I+L   G+    T L +W  I +  +D  LRP+L+     +P
Sbjct: 251 FICCVAQLGPLLILVPAIIWLYWTGDTTWGTALLIWSCI-VGTMDNVLRPYLIRMEADMP 309

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMAL---IAVIW-------KESIMAIKENKEKI 356
            +    G++GG+ + G++GLFIGPV++A+   +   W       +ESI  + ++ E++
Sbjct: 310 MILILSGVIGGLLSFGMIGLFIGPVVLAISYRLTSAWVNEAPEPEESIQEVAKHLEEL 367


>gi|238787117|ref|ZP_04630917.1| hypothetical protein yfred0001_6030 [Yersinia frederiksenii ATCC
           33641]
 gi|238724905|gb|EEQ16545.1| hypothetical protein yfred0001_6030 [Yersinia frederiksenii ATCC
           33641]
          Length = 367

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 153/351 (43%), Gaps = 20/351 (5%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV-IATVSVMCLF 74
           IM +I+ S + ++ F      A ++   +WP+    + K      +LAV + T+ ++ LF
Sbjct: 21  IMIMIVASFWVVQPFVMGFAWAGMVVIATWPLLVR-LQKLLWGKRWLAVMVMTLLLILLF 79

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL---WTKHLSHPQ 131
           ++P+  L    +     L+      +   +P   WL  IP  M  ++L   W   ++   
Sbjct: 80  VIPIALLVSSLVENSGPLIQWASSPSNLRMPDVTWLQTIP--MVGNKLYSGWHTLIAGGG 137

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS----QQ 187
           ++ I          + ++   A+  G   +   L ++F I+  F   + G +I     + 
Sbjct: 138 NVLIAKIQPYIGASVTWLVAQAAHVGYFLIHLALMLLFSILLYFHGEQVGLAIRHFAVRA 197

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
            D  G+         +  +  K IR+  LG+ + A+ + ++ G    LAGV       V+
Sbjct: 198 ADKRGD--------AVVVLAAKAIRAVALGVVVTALVQSVLGGIGLALAGVQYATLFTVL 249

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  +   G  +      I+L   G+    T L +W  I +  +D  LRP+L+     +
Sbjct: 250 MFVCCVAQLGPLLILIPAVIWLYWTGDSTWGTILLVWSCI-VGTMDNVLRPYLIRMEADM 308

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           P +    G++GG+ + G++GLFIGPV++A+   +    +    E +E I+ 
Sbjct: 309 PMILILSGVIGGLLSFGMIGLFIGPVVLAISYRLTAAWVSEAPEPEESITE 359


>gi|254516312|ref|ZP_05128371.1| hypothetical protein NOR53_2523 [gamma proteobacterium NOR5-3]
 gi|219674735|gb|EED31102.1| hypothetical protein NOR53_2523 [gamma proteobacterium NOR5-3]
          Length = 368

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 156/329 (47%), Gaps = 14/329 (4%)

Query: 15  MIMFIILVSLYF--LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           ++M +    L+F  + GF   +L A +    ++P+YS   +     +T  +++  +  + 
Sbjct: 17  LVMTLAYTGLFFAMISGFAMALLLAAVFSGIAYPLYSWLSNVWGGRNTLASLMTLLISLL 76

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM-WASELWTKHLSHPQ 131
             +VPL+ L      +  E+  +V    +  +   +  S +PG + +A EL       P 
Sbjct: 77  AIVVPLMLLLGLVADQALEVAEEVTPWIEQQLDQSQEPSALPGWVPYAEEL------EPY 130

Query: 132 SLKILSET--FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             +I+++   F    G+ ++    S      + + L++  ++ A+FFF   G ++ +++ 
Sbjct: 131 RDRIMAKVAEFAGNAGV-YLASGLSTLTQGTMSFFLNLFVILYAMFFFLISGSALIEKIM 189

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           S    L      K+ ++   V R+T  G  II   +G + G  + +AG+ + V  G + A
Sbjct: 190 SYA-PLSRVDKDKMLQVGLSVSRATVKGTLIIGAIQGALGGLGFAVAGIDAAVFWGAVMA 248

Query: 250 IMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +++++PG GA + +    ++LLI G       L  W A  +  +D  LRP LVG   ++P
Sbjct: 249 VLSILPGIGATLVWAPAVVFLLISGETLVGLGLLAWSAGVVGTIDNFLRPILVGRDTEMP 308

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
            L      +GG+   G+ GL +GP+L AL
Sbjct: 309 DLLILLSTLGGLGLFGVAGLVLGPILAAL 337


>gi|71909098|ref|YP_286685.1| hypothetical protein Daro_3486 [Dechloromonas aromatica RCB]
 gi|71848719|gb|AAZ48215.1| Protein of unknown function UPF0118 [Dechloromonas aromatica RCB]
          Length = 375

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 154/346 (44%), Gaps = 11/346 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I+ +I +S++ L  F A  + A++I   +WP++ S  S+         V+ +V+++ L +
Sbjct: 17  ILGLIGLSVWVLLPFLAATVWAVMIVVATWPLFKSLESRLGNRRAPAVVLMSVAMLLLLV 76

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVP-RWLSDIP-GGMWASELWTKHLSHPQSL 133
           +PL       +    +L +       +G+P P  W+  +P  G   +  W +  +   S 
Sbjct: 77  LPLWLAVDTIIEHSGQLAAAGKSMAANGLPPPPAWVKTLPLVGDRVASAWAQLDAAGTSG 136

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            +   T    +   ++   A   G + + + L +    I     Y  G + ++     G 
Sbjct: 137 IVTKVTPYAADTGKWVLAQAGSVGGMLIQFLLVVTIAAI----LYSGGETGARTARRFGR 192

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            L     +    +  + IR   LG+ + AI + ++ G    +AGVP    L  +  ++ +
Sbjct: 193 RLAGDRGENSIILAGQAIRGVALGVGVTAIVQTVLGGVGLAVAGVPFASLLSAVMLMLCI 252

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
              G  +       ++   G+   AT L +W  I +  +D  LRP L+     LP L  F
Sbjct: 253 AQIGPMLVLLPAVGWMYWMGDSGWATLLLVWSLI-VGSLDNFLRPMLIKRGADLPLLLIF 311

Query: 314 FGLVGGVRTMGLLGLFIGPVLMAL---IAVIWKESIMAIKENKEKI 356
            G++GG+ + GL+G+F+GPV++A+   + + W E  +  K+  E I
Sbjct: 312 AGVIGGMLSFGLIGIFVGPVVLAVTYTLTLAWIEDALG-KDEPESI 356


>gi|238749448|ref|ZP_04610953.1| hypothetical protein yrohd0001_27650 [Yersinia rohdei ATCC 43380]
 gi|238712103|gb|EEQ04316.1| hypothetical protein yrohd0001_27650 [Yersinia rohdei ATCC 43380]
          Length = 367

 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 74/354 (20%), Positives = 151/354 (42%), Gaps = 19/354 (5%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I+ +IL S + ++ F      A ++   +WP+     +          +I T+ ++ LF+
Sbjct: 21  ILIMILASFWVIQPFVMGFAWAGMVVIATWPLLIRLQNLLWGKRWLAVIIMTLLLVLLFV 80

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP--GGMWASELWTKHLSHPQSL 133
           +P+  L    +     L+      +   +P   WL  IP  G    S  +T       +L
Sbjct: 81  IPIGLLVSSLVENSGPLIQWASSPSNLRMPDVTWLKTIPMVGDKLYSGWYTLIAGGGNAL 140

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS----QQLD 189
               + ++    + ++   A+  G   +   L ++F ++  F   + G  I     +  D
Sbjct: 141 IAKVQPYIGA-AVTWLVAQAAHVGYFLIHMALMLLFSVLLYFHGEQVGLGIRHFAVRAAD 199

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
             G+         +  +  K IR+  LG+ + A+ + ++ G    LAG+     L V+  
Sbjct: 200 KRGD--------AVVVLAAKAIRAVALGVVVTALVQAVLGGIGLALAGIQYATLLTVLMF 251

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I  +   G  +      I+L   G+    T L +W  I +  +D  LRP+L+     +P 
Sbjct: 252 ICCVAQLGPLLILIPAIIWLYWTGDNTWGTILLVWSCI-VGTMDNVLRPYLIRMEADMPM 310

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMAL---IAVIWKESIMAIKENKEKISSNF 360
           +    G++GG+ + G++GLFIGPV++A+   +   W       +E+ ++++ + 
Sbjct: 311 ILILSGVIGGLLSFGMIGLFIGPVVLAISYRLTAAWVSEAPEPEESLQEVAKHL 364


>gi|313206604|ref|YP_004045781.1| hypothetical protein Riean_1114 [Riemerella anatipestifer DSM
           15868]
 gi|312445920|gb|ADQ82275.1| protein of unknown function UPF0118 [Riemerella anatipestifer DSM
           15868]
 gi|315022099|gb|EFT35128.1| hypothetical protein RAYM_06367 [Riemerella anatipestifer RA-YM]
 gi|325335954|gb|ADZ12228.1| protein of unknown function UPF0118 [Riemerella anatipestifer
           RA-GD]
          Length = 373

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 105/211 (49%), Gaps = 9/211 (4%)

Query: 135 ILSE---TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF---FYRDGFSISQQL 188
           ILSE     L    +D +   A +     L   L+ + +I++ +F   F      I +++
Sbjct: 119 ILSEIQIDILSKENLDKVKETAGQLSTTILSSTLNTVTIIVSTYFLLYFMLVKPRIFERI 178

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +    L       IS  + K+I +  +G+ ++A G+GL     Y + G PS + L  +T
Sbjct: 179 LTNAAPLKRTNINLISEKIRKMIIANAIGIPVVAFGQGLAALVGYLIFGAPSVILLFALT 238

Query: 249 AIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            I +MIP  GGA I +  V+++++ +G+  +   L ++  + + ++D  LR  L+     
Sbjct: 239 TIASMIPIVGGALI-YVPVALFMIAEGDTVSGVGLAIYCLVVVGLIDNVLRFTLLKKLED 297

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           +  L T FG++ G+   G +GL  GP+L+++
Sbjct: 298 IHPLNTVFGIILGMNLFGFMGLVFGPILVSV 328


>gi|300716475|ref|YP_003741278.1| hypothetical protein EbC_18970 [Erwinia billingiae Eb661]
 gi|299062311|emb|CAX59428.1| uncharacterized protein [Erwinia billingiae Eb661]
          Length = 376

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 100/218 (45%), Gaps = 10/218 (4%)

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
           +T+G  F+   A  FG   +   L ++F ++     Y  G  +   +      L      
Sbjct: 152 RTSG--FLFAQAGHFGRFMMHLGLMLLFSVL----LYARGEQVGHGIRHFAFRLASRRGD 205

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
               +  + IR+  LG+ + A+ +GL+ G    ++G+P    L V+  +  ++  G  + 
Sbjct: 206 AAVLLAGQAIRAVALGVVVTALVQGLLGGIGLAISGIPYATVLTVVMILSCLVQLGPLVV 265

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
                ++L   G+    T L +W  + +  +D  LRP L+     LP +    G++GG+ 
Sbjct: 266 LIPAIVWLYWTGDTTWGTVLLIWSCV-VGTLDNVLRPMLIRMGADLPMILILSGVIGGLI 324

Query: 322 TMGLLGLFIGPVLMAL---IAVIWKESIMAIKENKEKI 356
             G++GLFIGPV++A+   +  +W     A +++  ++
Sbjct: 325 AFGMIGLFIGPVVLAVSYRLVSVWVHEAPAPEDDPLEV 362


>gi|303327143|ref|ZP_07357585.1| putative membrane protein [Desulfovibrio sp. 3_1_syn3]
 gi|302863131|gb|EFL86063.1| putative membrane protein [Desulfovibrio sp. 3_1_syn3]
          Length = 368

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 113/262 (43%), Gaps = 27/262 (10%)

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
           G+  ++EL      AN   +P P+W+  I       + W   L+   S++     FL   
Sbjct: 107 GLARLRELQ-----ANNFQLP-PQWVEHI-------QHWRLSLTEYPSIEKAVNDFLHNL 153

Query: 145 GI---DFIPRFASR----FGMIFLDYCLSIIFMIIALFF--FYRDGFSISQQLDSLGEHL 195
                D +    SR     G     +  + +F+ + + F  + R    ++ ++  L + L
Sbjct: 154 DTLFGDAVTMLVSRSFGFLGGTMTAFWTTFLFLTLTVLFTVYSRRIRKVTCRIFHLPQAL 213

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
              +   I R     +R   LG+ ++A+ +G + G  + +AG       G++  ++A IP
Sbjct: 214 LRRFISAIHR----ALRGIMLGIVLVALAQGFLCGIGFAVAGFNQPAFWGMLATLVAPIP 269

Query: 256 G-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G  + +  + + L   G    A  L LWG + +  VD  LRP  +   IK PF     
Sbjct: 270 VVGTALVWLPLCLSLWFTGKTMAAVGLALWGMLAVAGVDNVLRPLFLRQGIKAPFFVLIL 329

Query: 315 GLVGGVRTMGLLGLFIGPVLMA 336
            ++ G+ + G +GL  GPVL+A
Sbjct: 330 AILCGLASFGPVGLIAGPVLLA 351


>gi|308186662|ref|YP_003930793.1| UPF0118 inner membrane protein ydiK [Pantoea vagans C9-1]
 gi|308057172|gb|ADO09344.1| UPF0118 inner membrane protein ydiK [Pantoea vagans C9-1]
          Length = 372

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 108/245 (44%), Gaps = 14/245 (5%)

Query: 98  LANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS-----LKILSETFLKTNGIDFIPRF 152
           +   H +P   WL D+P  M   +L+  + +   S     +  +     +T G  F    
Sbjct: 101 VTQGHTMPQLLWLRDVP--MVGKKLYVSYDTLVASGGAGIMAKIQPYIGRTTG--FFVAQ 156

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
           A  FG   +   + ++F ++     Y  G   +Q +      +          +  + IR
Sbjct: 157 AGHFGRFMIHLGVMLLFSVL----LYWRGEQAAQGIRHFAFRMAGRRGDAAVLLAAQSIR 212

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
           +  LG+ + A+ +G++ G    ++G+P    L V+  +  ++  G  +      IYL   
Sbjct: 213 AVALGVVVTALVQGVLGGIGLAISGIPYATLLTVLMILCCLVQLGPLLVLVPAIIYLYWS 272

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
           G+    T L +W  + +  +D  LRP L+     LP +    G++GG+   G++GLFIGP
Sbjct: 273 GDTTWGTVLLVWSCV-VGTMDNVLRPMLIRMGADLPMILILSGVIGGLFAFGMIGLFIGP 331

Query: 333 VLMAL 337
           V++A+
Sbjct: 332 VVLAV 336


>gi|332182085|gb|AEE17773.1| protein of unknown function UPF0118 [Treponema brennaborense DSM
           12168]
          Length = 407

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 114/249 (45%), Gaps = 23/249 (9%)

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKI----LSETFLKTNGIDFIPRFASRF---GM 158
           V  +++  P  + +SE+    L       +    L+ T L+TN I FI +++SR    G 
Sbjct: 141 VEDFINRNPDFLTSSEIGKSVLGFIDRFNLDFIDLNSTDLRTNLIKFIQQYSSRIVSTGA 200

Query: 159 IFL----DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRST 214
             L    ++ +S++F+  AL+F + DG  ++  L      + P Y   + +   ++ R  
Sbjct: 201 TVLSSTGNFLVSVLFVTFALYFCFLDGRYLASLLAQ-AIPINPQYMSALMKKFAEITRHL 259

Query: 215 FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGA----PISFTAVSIY 268
           F G  ++A+ +G        +  V   +   VI    + IP  G A    P+     +  
Sbjct: 260 FSGYILVALYQGFAAFIIMSIFRVQGSLLFAVILMFASFIPLFGAALVWLPMGIVICATD 319

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
            L+KG +F   C      I +  +D  LRP  +   IK+  L  FF ++GG++  G+ GL
Sbjct: 320 SLLKGILFLVLC-----GICVSFLDNFLRPMFLKDRIKVHPLVIFFAILGGLKVFGMNGL 374

Query: 329 FIGPVLMAL 337
            +GP+++ L
Sbjct: 375 LLGPMIIIL 383


>gi|145598044|ref|YP_001162120.1| putative inner membrane protein [Yersinia pestis Pestoides F]
 gi|108775672|gb|ABG18191.1| membrane protein [Yersinia pestis Nepal516]
 gi|108779660|gb|ABG13718.1| putative membrane protein [Yersinia pestis Antiqua]
 gi|145209740|gb|ABP39147.1| membrane protein [Yersinia pestis Pestoides F]
          Length = 346

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/346 (19%), Positives = 147/346 (42%), Gaps = 12/346 (3%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           M +I+ S + ++ F      A ++   +WP+            +   V+ T+ ++ LF++
Sbjct: 1   MGMIIASFWVIQPFVMGFAWAGMVVIATWPLLIRLEKLLWGRRSLAVVVMTILLILLFVI 60

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP---GGMWASELWTKHLSH-PQS 132
           P+  L    +     L+      +   +P   W+  IP     +++S  W   +S    +
Sbjct: 61  PIALLVSSLVENSAPLIQWASSPSNLRMPNVDWMKSIPLIGDKLYSS--WNTLISGGANA 118

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           L    + ++      F+ + A+  G   +   L ++F ++     Y  G  ++  +    
Sbjct: 119 LMAKVQPYIGATATWFVAQ-AAHVGYFLIHLALMVLFSVL----LYIHGEQVALGIRHFA 173

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                     +  +  K IR+  LG+ + A+ + ++ G    +AG+     L V+  I  
Sbjct: 174 MRAADKRGDAVVVMAAKAIRAVALGVVVTALVQAILGGIGLAIAGIQYATLLTVLMFICC 233

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +   G  +      I++   G+    T L +W  I +  +D  LRP+L+     +P +  
Sbjct: 234 VAQLGPLLVLVPAVIWVYWTGDTTWGTILLVWSCI-VGTLDNFLRPYLIRMEADMPMILI 292

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G++GG+ + G++GLFIGPV++A+   +    +    E +E ++ 
Sbjct: 293 LSGVIGGLLSFGMIGLFIGPVVLAISYRLISAWVHETPEPEESVTD 338


>gi|310767540|gb|ADP12490.1| putative inner membrane protein [Erwinia sp. Ejp617]
          Length = 374

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 95/214 (44%), Gaps = 10/214 (4%)

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
           +T G  F    A  FG   +   L ++F ++     Y  G  +   +      L      
Sbjct: 148 RTTGFFFAQ--AGHFGRFMMHLGLMLLFSVL----LYWRGEQVGLGIRHFAFRLASRRGD 201

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
               +  + IR+  LG+ + A+ +G++ G    ++G+P    L V+  +  ++  G  I 
Sbjct: 202 AAVLLAAQAIRAVALGVVVTALVQGVLGGIGLAVSGIPFATILTVLMILSCLVQLGPLIV 261

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
                I+L   G+    T L +W  + +  +D  LRP L+     LP +    G++GG+ 
Sbjct: 262 LVPAIIWLYWSGDTTWGTVLLIWSCV-VGTLDNVLRPMLIRMGADLPMILILSGVIGGLV 320

Query: 322 TMGLLGLFIGPVLMAL---IAVIWKESIMAIKEN 352
             G++GLFIGPV++A+   +  +W     A  EN
Sbjct: 321 AFGMIGLFIGPVVLAISYRLVSVWVHETPAPHEN 354


>gi|78357491|ref|YP_388940.1| hypothetical protein Dde_2448 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219896|gb|ABB39245.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 415

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 143/331 (43%), Gaps = 47/331 (14%)

Query: 37  ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV 96
           A+++    +P+Y+  + +    S  LA +A +  +C+ I   LF+F  G++   + V  V
Sbjct: 78  AIVLSAICYPLYNKVLQRTGHRSRTLASLAVLLFLCICIALPLFIFVTGLI--PQAVQSV 135

Query: 97  VLANQHGIPVPRWLSDIP------GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
              N        W++          G     L   H   P         F+  + ID   
Sbjct: 136 TAVNN-------WINHTDFDQLFGAGRLEQYLAWVHQHLP---------FIDASKIDLRA 179

Query: 151 RFAS---RFGMIFLD---YCLS--------IIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            F S   R G   L+   Y L          + M++ +FF  +DG  + Q +    +++ 
Sbjct: 180 EFISFSRRMGQTLLEGGTYLLGNALTLFFQFLLMLLIVFFMLKDGKKMLQVV----KYMC 235

Query: 197 PAYWKKISRIV---PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           P +  +   I+     V +S  +G  ++A  +GL  G    L G+P+ +  G +    ++
Sbjct: 236 PLHEDQEDAILLNLRSVSKSVLVGGLLVAALQGLAGGIGLALVGIPA-LFWGTVMGFASL 294

Query: 254 IPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +P  G  + +    +YLL+ G   ++  LF+W A+ +  +D  LRP+ + G   +     
Sbjct: 295 VPVVGTGLVWMPACLYLLLMGQWQSSLFLFVWSAVGVASIDSFLRPYFMRGSAGMSTFFI 354

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           F  ++GG++  G+ G+  GP+++    V+ +
Sbjct: 355 FMSIMGGIKVFGMAGVLYGPLILGFTMVMLR 385


>gi|259908561|ref|YP_002648917.1| putative inner membrane protein [Erwinia pyrifoliae Ep1/96]
 gi|224964183|emb|CAX55690.1| conserved uncharacterized protein [Erwinia pyrifoliae Ep1/96]
 gi|283478527|emb|CAY74443.1| UPF0118 inner membrane protein ydiK [Erwinia pyrifoliae DSM 12163]
          Length = 374

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 95/214 (44%), Gaps = 10/214 (4%)

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
           +T G  F    A  FG   +   L ++F ++     Y  G  +   +      L      
Sbjct: 148 RTTGFFFAQ--AGHFGRFMMHLGLMLLFSVL----LYWRGEQVGLGIRHFAFRLASRRGD 201

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
               +  + IR+  LG+ + A+ +G++ G    ++G+P    L V+  +  ++  G  I 
Sbjct: 202 AAVLLAAQAIRAVALGVVVTALVQGVLGGIGLAVSGIPFATILTVLMILSCLVQLGPLIV 261

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
                I+L   G+    T L +W  + +  +D  LRP L+     LP +    G++GG+ 
Sbjct: 262 LVPAIIWLYWSGDTTWGTVLLIWSCV-VGTLDNVLRPMLIRMGADLPMILILSGVIGGLV 320

Query: 322 TMGLLGLFIGPVLMAL---IAVIWKESIMAIKEN 352
             G++GLFIGPV++A+   +  +W     A  EN
Sbjct: 321 AFGMIGLFIGPVVLAISYRLVSVWVHETPAPHEN 354


>gi|260654239|ref|ZP_05859729.1| putative membrane protein [Jonquetella anthropi E3_33 E1]
 gi|260630872|gb|EEX49066.1| putative membrane protein [Jonquetella anthropi E3_33 E1]
          Length = 354

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 16/191 (8%)

Query: 159 IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK---VIRSTF 215
           +F D CL++       FF  RDG S+++ L        P   K+  R+      VIRST 
Sbjct: 165 LFADSCLALYMA----FFLIRDGGSLAEIL----IKALPLGDKRERRLFETFVGVIRSTV 216

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGN 274
            G  ++A   G++        G+   +  GV   +++++P  G  + +  +SIY+   GN
Sbjct: 217 KGNVLMAFLHGVIGAVTLGFLGMNGLLLWGVAMGVLSLVPLVGTAVVWLPLSIYMASSGN 276

Query: 275 IFNATCLFLWGA--IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
                C FL G     +  VD  LRP +VG  +++P        +GG+ + GL G+  GP
Sbjct: 277 WTG--CFFLAGVEIAAMVGVDNVLRPAMVGRSLQMPDYLVLLSTLGGLASFGLGGMIAGP 334

Query: 333 VLMALIAVIWK 343
           ++ AL    WK
Sbjct: 335 LVAALFVSAWK 345


>gi|242399644|ref|YP_002995069.1| Predicted permease [Thermococcus sibiricus MM 739]
 gi|242266038|gb|ACS90720.1| Predicted permease [Thermococcus sibiricus MM 739]
          Length = 328

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 99/197 (50%), Gaps = 23/197 (11%)

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQL--------DSLGEHLFPAYWKKISRIVPKVIRS 213
            Y L ++  +   + F  +   I +Q+        + LGE L     K+    +  +IR+
Sbjct: 134 KYLLQLVIFLAMFYTFLVNSDRIKKQIYLLIPRGHEDLGEKLL----KRADVTLQALIRA 189

Query: 214 TFLGMTIIAIGEGLVLGSAYW---LAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIY 268
             L    + I +G ++   +W   +  +P+ +  G++T + + IP   G  I   A +I+
Sbjct: 190 WLL----LNIAKGALMTLGFWGFGITDIPTALLAGLLTMLFSFIPLFEGWMIWVVA-AIF 244

Query: 269 LLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           LL +G++  A  + ++GA+ +  + D T+RP LV    KL  +    G++GGV   G+ G
Sbjct: 245 LLKQGDVLKAIAISIYGAVLVSPLPDFTIRPKLVAKEAKLDEIMVLIGMIGGVWAFGVKG 304

Query: 328 LFIGPVLMALIAVIWKE 344
           L IGP+++ L++ + KE
Sbjct: 305 LIIGPIILNLVSALLKE 321


>gi|323698189|ref|ZP_08110101.1| protein of unknown function UPF0118 [Desulfovibrio sp. ND132]
 gi|323458121|gb|EGB13986.1| protein of unknown function UPF0118 [Desulfovibrio desulfuricans
           ND132]
          Length = 368

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 96/197 (48%), Gaps = 8/197 (4%)

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
           +  + M+  LF+F RDG  +   +  L   L P     I   + +V R   +G  ++A+ 
Sbjct: 174 MHFLLMVFILFYFMRDGTKMVAYIKRLSP-LKPKQEDYIIDSLKRVARGVLMGCLLVAVL 232

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLF 282
           +G   G    +AG+P+    G + A+ ++IP  G   +   AV  YL + G    A  L 
Sbjct: 233 QGFAGGVGLAVAGIPAFF-WGGMMALSSLIPVLGTGLVWVPAVG-YLFLSGQWKMAIFLA 290

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           LW  I +  +D  LRP  +    ++     F  ++GG+ + G+LG+F GP++++ + V+ 
Sbjct: 291 LWCGIFVVGIDTILRPIFMREASRVSTFYIFIAILGGIYSFGMLGIFYGPLILSFVMVML 350

Query: 343 KESIMAIKENKEKISSN 359
           +   + ++E  + +  +
Sbjct: 351 Q---LYLEEYADDLDDH 364


>gi|218780815|ref|YP_002432133.1| hypothetical protein Dalk_2975 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218762199|gb|ACL04665.1| protein of unknown function UPF0118 [Desulfatibacillum alkenivorans
           AK-01]
          Length = 358

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 78/157 (49%), Gaps = 9/157 (5%)

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFP---AYWKKISRIVPKVIRSTFLGMTIIAIG 224
           + M+ ALF+F RDG     Q      HL P   +   +I     +V RS F G  + A+ 
Sbjct: 168 VLMLFALFYFLRDGV----QALRWAMHLSPLKQSLENEIIDCFKEVSRSAFYGTFLTAVA 223

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFL 283
           +G++ G   + AG+P  +  GV+ A  +M+P  G  + +   +I L   G I +A  L +
Sbjct: 224 QGVLGGIGLFFAGLPP-LTWGVVMAFFSMVPVIGTALVWVPATILLYATGKIGSAIFLAI 282

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
           W  + +   D  LRP L+ G  +L  L  FF L+GG+
Sbjct: 283 WCMVVVGASDNVLRPLLMRGKNELHPLLIFFSLLGGL 319


>gi|90410495|ref|ZP_01218511.1| putative membrane protein [Photobacterium profundum 3TCK]
 gi|90328736|gb|EAS45020.1| putative membrane protein [Photobacterium profundum 3TCK]
          Length = 379

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 162/351 (46%), Gaps = 38/351 (10%)

Query: 9   QGIMRWMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFIS----KKEESSTFLA 63
           +  +R  ++FI++V  Y  +K F  PVL   II     P+     +    ++  S+T LA
Sbjct: 25  ESAIRIGLLFILIVWTYDIIKPFVIPVLWGAIIAVALLPLTQKLEAMLGGRRGLSATILA 84

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP-RWLSDIPG-GMWASE 121
           ++     + L + P + L    + +    ++ VV +    IP P + ++DIP  G    E
Sbjct: 85  LLG----ITLLVAPFV-LVSGSIFDAVTHLTDVVQSGDIKIPGPTQRIADIPVIGDKLFE 139

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI--FLDYCLSIIFM-IIALFF-- 176
           +W+           L  T L+     F+P   +  G +   +   L+ + M II+L    
Sbjct: 140 VWS-----------LFSTNLEKAVTHFLPEIKTAVGTMASLVGSSLATLVMFIISLAIAA 188

Query: 177 -FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
            F     + S+ + ++   +   + ++ + +    IRS  LG+  +A  + +++G+  ++
Sbjct: 189 GFMTHSKACSEAIGTVAVRVVGKHGEEWTTLTAATIRSVLLGVVGVAFIQSMLVGAGMFV 248

Query: 236 AGVPSH--VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
            GVP+   + LGV+   +A +P  A I    V  Y+    +  +AT   +W  +   I D
Sbjct: 249 FGVPAAGLITLGVLILGIAQLP--ALIIVAPVIFYVFSTQDTTSATIFTVW-VLLAGISD 305

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L+P L+G  + +P      G +GG+   G++GLF+G V++A    IW E
Sbjct: 306 NFLKPMLMGRGVDVPMPVILIGAIGGMLAAGIIGLFLGAVVLA----IWYE 352


>gi|297570117|ref|YP_003691461.1| protein of unknown function UPF0118 [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296926032|gb|ADH86842.1| protein of unknown function UPF0118 [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 379

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 18/192 (9%)

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDG-------FSISQQLDSLGEHLFPAYWKKISR 205
           AS +    + + L     I+ +FF   +        F +S   D     LF  +      
Sbjct: 146 ASTWAANLMMFVLGFFLTIVTIFFLLMEHDRLLNYIFRLSPLPDDQERQLFAKF------ 199

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTA 264
              ++  +  +G  I A+ +G++ G  +W   +   V  G I A++A +P  G  +    
Sbjct: 200 --DEITGAVLIGNGICAVIQGIIGGLIFWAFNLGPPVLWGAIMAVLAFLPIVGIGLVMVP 257

Query: 265 VSIYLLIKGNIFNATCL-FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++LLIKGN+ +A  L  L+G I LFI +  L+P LVG   K+  L  F  ++GG+ T 
Sbjct: 258 TVLFLLIKGNLVDAILLAILYGIITLFI-ESLLKPKLVGDRAKMHILLVFLSIIGGLNTF 316

Query: 324 GLLGLFIGPVLM 335
           G LG+  GP+++
Sbjct: 317 GFLGIIYGPLIV 328


>gi|54308755|ref|YP_129775.1| hypothetical protein PBPRA1562 [Photobacterium profundum SS9]
 gi|46913185|emb|CAG19973.1| putative membrane protein [Photobacterium profundum SS9]
          Length = 373

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 161/352 (45%), Gaps = 40/352 (11%)

Query: 9   QGIMRWMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFIS----KKEESSTFLA 63
           +  +R  ++FI++V  Y  +K F  PVL   II     P+     +    ++  S+T LA
Sbjct: 19  ESAIRIGLLFILIVWTYDIIKPFVIPVLWGAIIAVALLPLTQKLQNMLGGRRGLSATILA 78

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP-RWLSDIP--GGMWAS 120
           ++     + L + P + L    + +    ++ +V + +  I  P + ++DIP  GG    
Sbjct: 79  ILG----ITLLVAPFV-LVSGSIFDAVTHLTDIVQSGEIKISGPTQRIADIPVIGGKL-F 132

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGM---IFLDYCLSIIFMIIALFF- 176
           E+W+           L  T L+     F+P   +  G    +      S++  II+L   
Sbjct: 133 EVWS-----------LFSTNLEKAVTHFLPEIKTAVGAMASLVGSSLASLVMFIISLAIA 181

Query: 177 --FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
             F     + S+ + ++   +   + ++ + +    IRS  LG+  +A  + +++G+  +
Sbjct: 182 AGFMTHSIACSEAIGTVAVRVVGKHGEEWTTLTAATIRSVLLGVVGVAFIQSMLVGAGMF 241

Query: 235 LAGVPSH--VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           + GVP+   + LGV+   +A +P  A I    V  Y+    +  +AT   +W  +   I 
Sbjct: 242 VFGVPAAGLITLGVLILGIAQLP--ALIIVAPVIFYVFSTQDTTSATIFTVW-VLLAGIS 298

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           D  L+P L+G  + +P      G +GG+   G++GLF+G V++A    IW E
Sbjct: 299 DNFLKPMLMGRGVDVPMPVILIGAIGGMLAAGIIGLFLGAVVLA----IWYE 346


>gi|304309717|ref|YP_003809315.1| Predicted permease PerM family [gamma proteobacterium HdN1]
 gi|301795450|emb|CBL43648.1| Predicted permease PerM family [gamma proteobacterium HdN1]
          Length = 414

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 91/184 (49%), Gaps = 8/184 (4%)

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDS---LGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
            L+ +  +   FFF RDG  ++ QL     LG+    A  + +      V+R+T  G  +
Sbjct: 161 VLNAVLALYVGFFFLRDGEQLTVQLIRALPLGD----ARERLLLDRFAGVMRATIKGTLV 216

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
           +A+ +G + G A+   G+   +  G +  I ++IP  GA + +  V++Y L  G+  +  
Sbjct: 217 VALVQGALGGLAFAALGISGALLWGGVMVIASLIPAVGAALIWAPVAVYSLATGDWVSGV 276

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
            L + G   + +VD  LRP LVG   ++P        +GG+   G+ GL IGP++ AL  
Sbjct: 277 VLIVVGVGVIGMVDNLLRPILVGRDTQMPDYLVLLSTLGGLALFGMNGLIIGPIIAALFI 336

Query: 340 VIWK 343
             W+
Sbjct: 337 AFWE 340


>gi|304397632|ref|ZP_07379509.1| protein of unknown function UPF0118 [Pantoea sp. aB]
 gi|304354804|gb|EFM19174.1| protein of unknown function UPF0118 [Pantoea sp. aB]
          Length = 372

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 118/269 (43%), Gaps = 19/269 (7%)

Query: 98  LANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS-----LKILSETFLKTNGIDFIPRF 152
           +   H +P   WL +IP  M   +L+  + +   S     +  +     +T G  F    
Sbjct: 101 VTQGHTMPKLTWLREIP--MVGKKLYVSYDTLVASGGAGVMAKIQPYIGRTTG--FFVAQ 156

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
           A  FG   +   + ++F ++     Y  G   +Q +      +          +  + IR
Sbjct: 157 AGHFGRFMIHLGVMLLFSVL----LYWRGEQAAQGIRHFAFRMAGRRGDAAVLLAAQSIR 212

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
           +  LG+ + A+ +G++ G    ++G+P    L V+  +  ++  G  +      IYL   
Sbjct: 213 AVALGVVVTALVQGVLGGIGLAISGIPYATLLTVLMILCCLVQLGPLLVLVPAIIYLYWS 272

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
           G+    T L +W  + +  +D  LRP L+     LP +    G++GG+   G++GLFIGP
Sbjct: 273 GDTTWGTVLLVWSCV-VGTMDNVLRPMLIRMGADLPMILILSGVIGGLFAFGMIGLFIGP 331

Query: 333 VLMAL---IAVIWKESIMAIKENKEKISS 358
           V++A+   +  +W     A   +K+ ++S
Sbjct: 332 VVLAVSYRLVSVWVHE--APAPDKDPMAS 358


>gi|325497136|gb|EGC94995.1| inner membrane protein [Escherichia fergusonii ECD227]
          Length = 372

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 151/330 (45%), Gaps = 18/330 (5%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I+  L+ ++ F   +  A  +   +WP+            +   ++ T+ ++ +FI+P+
Sbjct: 25  MIVACLWIVQPFILGITWAGTVVIATWPVLLRLQKILFGRRSLAVLVMTLLLVMVFIIPI 84

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT--KHLSHPQSLKIL 136
             L    +++    + K + +    +P   WL+ IP  +  ++L+    +L       I+
Sbjct: 85  -ALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIP--VIGAKLYAGWHNLLDMGGTAIM 141

Query: 137 SET--FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           ++   ++ T    F+ + A+  G  F+ +C     M++     Y  G  ++Q +      
Sbjct: 142 AKVRPYIGTTTTWFVGQ-AAHLGR-FMVHC---ALMLLFSALLYWRGEQVAQGIRHFATR 196

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  ++
Sbjct: 197 LAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSCLV 256

Query: 255 P-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
             G  P+   A+ I+L   G+    T L +W  + +  +D  +RP L+     LP +   
Sbjct: 257 QLGPLPVLIPAI-IWLYWTGDTTWGTVLLVWSGV-VGTLDNVIRPMLIRMGADLPLILIL 314

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            G++GG+   G++GLFIGPVL+   AV W+
Sbjct: 315 SGVIGGLIAFGMIGLFIGPVLL---AVTWR 341


>gi|226330354|ref|ZP_03805872.1| hypothetical protein PROPEN_04271 [Proteus penneri ATCC 35198]
 gi|225201149|gb|EEG83503.1| hypothetical protein PROPEN_04271 [Proteus penneri ATCC 35198]
          Length = 370

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 142/325 (43%), Gaps = 11/325 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F I+ S + L  F    + A +I   +WP+    I K+ +      +I  + ++ +F+
Sbjct: 20  ISFFIIASFWILNPFIVGFIWAGMIVVATWPLLL-IIEKRVKYRWLSTMIMMILILLIFV 78

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +P++ L    +     L+      +    P   WL+D+P  M  S L+        S+ +
Sbjct: 79  IPIILLISSVIDNSAPLIELAKSPSNIQPPQLLWLNDVP--MIGSSLYDTW----HSILV 132

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLD---YCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                L +    ++ + A+ F    L+   + L +  M++     +  G ++   L    
Sbjct: 133 SGGNALISKIQPYVGQAANWFFAQALNIGRFALHLGVMLLFSGLLFLQGENVVSWLRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +    IR+  LG+ + A+ + +V G    ++GVP    L VI  I  
Sbjct: 193 IRLAGQRGDAAILLASMSIRAVALGVVLTALIQAIVGGIGLAVSGVPYATVLTVIMFICC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +   G  +      ++L   G+      + +WG   +  +D  LRP+L+     LP +  
Sbjct: 253 LAQIGPLLVLIPSVLWLFWTGDTTWGIVMVIWGG-AVATMDGVLRPYLIKMGADLPMVLI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMAL 337
             G++GG+ T+G++GLFIGPV++A+
Sbjct: 312 LTGVIGGILTLGMIGLFIGPVVLAV 336


>gi|320539515|ref|ZP_08039182.1| putative inner membrane protein [Serratia symbiotica str. Tucson]
 gi|320030368|gb|EFW12380.1| putative inner membrane protein [Serratia symbiotica str. Tucson]
          Length = 366

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 4/155 (2%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           + IR+  LG+ + A+ + ++ G    L+G+P+   L V+  I  +   G  +      I+
Sbjct: 210 QAIRAVALGVVVTALVQSVLGGIGLALSGIPAATWLTVLIFICCVAQLGPLLVLVPAIIW 269

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L   G+   AT L +W  + +  +D  LRP L+     LP L    G++GG+   GL+GL
Sbjct: 270 LYWSGDTTWATVLVIWSCV-VATLDNVLRPMLIRMGADLPTLLILLGVIGGLLAFGLIGL 328

Query: 329 FIGPVLMAL---IAVIWKESIMAIKENKEKISSNF 360
           FIGPV++A+   +   W +         + ++ N 
Sbjct: 329 FIGPVVLAVSYRLLTAWMDEAAKPTTTLQDVARNL 363


>gi|150377734|ref|YP_001314329.1| hypothetical protein Smed_5665 [Sinorhizobium medicae WSM419]
 gi|150032281|gb|ABR64396.1| protein of unknown function UPF0118 [Sinorhizobium medicae WSM419]
          Length = 362

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 137/326 (42%), Gaps = 51/326 (15%)

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSD 112
           ++  +  F AV AT++V     VPL+FL      ++    + +  A+  GIP +P W++ 
Sbjct: 67  RRLAAVIFGAVAATITV-----VPLIFLCSSVASQLGVAGAWLSAASTRGIPNLPEWVAG 121

Query: 113 IP-GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGM------------- 158
           +P  G  A+  W +               L+  G++ + R+  +                
Sbjct: 122 LPLVGSKAAAAWQE---------------LQREGLELLERYQPQLAAAGRWLLNLGTGLL 166

Query: 159 -----IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
                IF+   L+ IF     +        + + +   G  L  A  K IS +   VI +
Sbjct: 167 LAVLEIFVGVVLAAIFHASRTWALGFVSAIMVRIVGPKGPELLSAAGKAISGVAIGVIGT 226

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
             L        EG++    + +AGVP  VAL   T  +A+I  G  + +  V+I+L  +G
Sbjct: 227 ALL--------EGVLAWIGFVIAGVPGAVALAAATFFLAVIQIGPLLVWLPVAIWLGAEG 278

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
               A  +  WG I L   D  ++P L+    +LP L  F G++GG+   G  G+FIG  
Sbjct: 279 QTGWAIFMVAWGIIVLMGTDNIVKPMLIARSGQLPMLVLFIGVIGGLAAWGFTGMFIGAT 338

Query: 334 LMALIAVIWKESIMAIKENKEKISSN 359
            +   AV+W      +  NK  +S+ 
Sbjct: 339 TL---AVLWTVLQAWLGTNKGPVSAT 361


>gi|323968456|gb|EGB63862.1| ydiK protein [Escherichia coli M863]
 gi|327252805|gb|EGE64459.1| hypothetical protein ECSTEC7V_2050 [Escherichia coli STEC_7v]
          Length = 370

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 73/347 (21%), Positives = 156/347 (44%), Gaps = 18/347 (5%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +FI+P
Sbjct: 22  IMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMVFIIP 81

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT--KHLSHPQSLKI 135
           +  L    +++    + K + +    +P   WL+ IP  +  ++L+    +L       I
Sbjct: 82  I-ALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIP--VIGTKLYAGWHNLLDMGGTAI 138

Query: 136 LSET--FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           +++   ++ T    F+ + A+  G  F+ +C     M++     Y  G  ++Q +     
Sbjct: 139 MAKVRPYIGTTTTWFVGQ-AAHIGR-FMVHC---ALMLLFSALLYWRGEQVAQGIRHFAT 193

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  +
Sbjct: 194 RLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSCL 253

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +  G  P+   A+ I+L   G+    T L +W  + +  +D  +RP L+     LP +  
Sbjct: 254 VQLGPLPVLIPAI-IWLYWTGDTTWGTVLLVWSGV-VGTLDNVIRPMLIRMGADLPLILI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMAL---IAVIWKESIMAIKENKEKI 356
             G++GG+   G++GLFIGPVL+A+   +   W E +    +  E++
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQPEEV 358


>gi|218548727|ref|YP_002382518.1| inner membrane protein [Escherichia fergusonii ATCC 35469]
 gi|218356268|emb|CAQ88885.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia fergusonii ATCC 35469]
 gi|324113453|gb|EGC07428.1| inner membrane protein ydiK [Escherichia fergusonii B253]
          Length = 370

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 151/331 (45%), Gaps = 18/331 (5%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            +I+  L+ ++ F   +  A  +   +WP+            +   ++ T+ ++ +FI+P
Sbjct: 22  IMIVACLWIVQPFILGITWAGTVVIATWPVLLRLQKILFGRRSLAVLVMTLLLVMVFIIP 81

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT--KHLSHPQSLKI 135
           +  L    +++    + K + +    +P   WL+ IP  +  ++L+    +L       I
Sbjct: 82  I-ALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIP--VIGAKLYAGWHNLLDMGGTAI 138

Query: 136 LSET--FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           +++   ++ T    F+ + A+  G  F+ +C     M++     Y  G  ++Q +     
Sbjct: 139 MAKVRPYIGTTTTWFVGQ-AAHLGR-FMVHC---ALMLLFSALLYWRGEQVAQGIRHFAT 193

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  +
Sbjct: 194 RLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSCL 253

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +  G  P+   A+ I+L   G+    T L +W  + +  +D  +RP L+     LP +  
Sbjct: 254 VQLGPLPVLIPAI-IWLYWTGDTTWGTVLLVWSGV-VGTLDNVIRPMLIRMGADLPLILI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             G++GG+   G++GLFIGPVL+   AV W+
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVLL---AVTWR 339


>gi|237803519|ref|ZP_04591104.1| putative lipoprotein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331025501|gb|EGI05557.1| putative lipoprotein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 118

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 60/105 (57%)

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
            + +AG+P  + LG++T + ++IP G P+ +   + +L+ +G    A  L +WG   +  
Sbjct: 11  GFLIAGIPGALVLGILTFLFSLIPMGPPLVWLPATAWLVWQGEYGMAVFLGIWGMFIISG 70

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
           VD  L+P+L+     LP +    G+ GG+   G +GLFIGP L+A
Sbjct: 71  VDNVLKPYLISRGGNLPLVIVLLGVFGGLLAFGFIGLFIGPTLLA 115


>gi|218705186|ref|YP_002412705.1| putative inner membrane protein [Escherichia coli UMN026]
 gi|293405185|ref|ZP_06649177.1| inner membrane protein [Escherichia coli FVEC1412]
 gi|298380829|ref|ZP_06990428.1| inner membrane protein [Escherichia coli FVEC1302]
 gi|300898531|ref|ZP_07116864.1| hypothetical protein HMPREF9552_02700 [Escherichia coli MS 198-1]
 gi|301026918|ref|ZP_07190314.1| hypothetical protein HMPREF9534_05215 [Escherichia coli MS 69-1]
 gi|218432283|emb|CAR13173.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli UMN026]
 gi|291427393|gb|EFF00420.1| inner membrane protein [Escherichia coli FVEC1412]
 gi|298278271|gb|EFI19785.1| inner membrane protein [Escherichia coli FVEC1302]
 gi|300357795|gb|EFJ73665.1| hypothetical protein HMPREF9552_02700 [Escherichia coli MS 198-1]
 gi|300395265|gb|EFJ78803.1| hypothetical protein HMPREF9534_05215 [Escherichia coli MS 69-1]
          Length = 370

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 73/347 (21%), Positives = 156/347 (44%), Gaps = 18/347 (5%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +FI+P
Sbjct: 22  IMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMVFIIP 81

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT--KHLSHPQSLKI 135
           +  L    +++    + K + +    +P   WL+ IP  +  ++L+    +L       I
Sbjct: 82  I-ALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIP--VIGAKLYAGWHNLLDMGGTAI 138

Query: 136 LSET--FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           +++   ++ T    F+ + A+  G  F+ +C     M++     Y  G  ++Q +     
Sbjct: 139 MAKVRPYIGTTTTWFVGQ-AAHIGR-FMVHC---ALMLLFSALLYWRGEQVAQGIRHFAT 193

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  +
Sbjct: 194 RLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSCL 253

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +  G  P+   A+ I+L   G+    T L +W  + +  +D  +RP L+     LP +  
Sbjct: 254 VQLGPLPVLIPAI-IWLYWTGDTTWGTVLLVWSGV-VGTLDNVIRPMLIRMGADLPLILI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMAL---IAVIWKESIMAIKENKEKI 356
             G++GG+   G++GLFIGPVL+A+   +   W E +    +  E++
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQPEEV 358


>gi|42523150|ref|NP_968530.1| putative permease [Bdellovibrio bacteriovorus HD100]
 gi|39575355|emb|CAE79523.1| putative permease [Bdellovibrio bacteriovorus HD100]
          Length = 371

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 143/320 (44%), Gaps = 11/320 (3%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM-CLFIVPLLF 80
           +SL+ L  F   ++ A +I   +W      +  +  +  F AV+    +M  L I+PL  
Sbjct: 23  ISLWVLLPFLPAMIWAAMIFIATWSTLLK-LQHRFNNKRFPAVLTMALLMTALVIIPLTA 81

Query: 81  LFYYGMLEMKELVSKVV-LANQHGIPVPRWLSDIP--GGMWASELWTKHLSHPQSLKILS 137
             +  +     +VS +  LAN    P P WL D P  G   A+       + PQ L   +
Sbjct: 82  ALFSLISNRHVIVSGLQDLANTQLPPAPDWLEDAPLLGPRIAARWNELAATAPQDLIERA 141

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
           + ++     ++I        M+ +   L+II   I    FY +G  I+Q   +L   L  
Sbjct: 142 KPYIH-QAFEWIVASVGSITMLVVHCILTIIIASI----FYSNGEKIAQACRTLTRRLAG 196

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
              ++  ++  + +R+  +G+   A+ +  + G    LAGVP    L  +  I  ++  G
Sbjct: 197 TRGEEALQLAAQSVRAVAMGIVGTALIQTALGGLGAGLAGVPHAGLLTAVILIFCVVQLG 256

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
             +       +L  +      T L  W A+ + ++D  +RP L+     LP +    G++
Sbjct: 257 PLLPLLGAVAWLYSQEQNTAGTILLGW-AVAVGLMDGFVRPILIKRGADLPAVLITVGVL 315

Query: 318 GGVRTMGLLGLFIGPVLMAL 337
           GG+ + G++GLFIGPV++A+
Sbjct: 316 GGMISFGIVGLFIGPVVLAV 335


>gi|15679222|ref|NP_276339.1| hypothetical protein MTH1211 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|8928484|sp|O27279|Y1211_METTH RecName: Full=UPF0118 membrane protein MTH_1211
 gi|2622321|gb|AAB85700.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 334

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 82/164 (50%), Gaps = 2/164 (1%)

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           F+F RDG  +   + +L       + ++++    +V+ S F G  + A+  GL+    + 
Sbjct: 154 FYFARDGKRLVGYIRTLIPEETRPFMERMASETERVLLSIFYGHFLTALAIGLMAAVGFH 213

Query: 235 LAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
           L G P  + LG++T +  +IP   P  ++T +SIY  + GNI     + ++G + L  +D
Sbjct: 214 LLGYPYAILLGIMTGLFQLIPVIGPWAAYTPLSIYDFVTGNILRGVLVLIFG-LFLSTID 272

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
             LRP L G    +  +    G +GG    G+ G  +GP+++ L
Sbjct: 273 IYLRPKLSGKYADIHPMIFLVGFLGGPVVWGVAGFIVGPLVLGL 316


>gi|162419988|ref|YP_001607006.1| putative inner membrane protein [Yersinia pestis Angola]
 gi|162352803|gb|ABX86751.1| putative membrane protein [Yersinia pestis Angola]
          Length = 365

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 68/346 (19%), Positives = 148/346 (42%), Gaps = 12/346 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           IM +I+ S + ++ F      A ++   +WP+            +   V+ T+ ++ LF+
Sbjct: 21  IMGMIIASFWVIQPFVMGFAWAGMVVIATWPLLIRLEKLLWGRRSLAVVVMTILLILLFV 80

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP---GGMWASELWTKHLSHPQS 132
           +P+  L    +     L+      +   +P   W+  IP     +++S  W   +S   +
Sbjct: 81  IPIALLVSSLVENSAPLIQWASSPSNLRMPNVDWMKSIPLIGDKLYSS--WNTLISGGAN 138

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             ++++         F+ + A+  G   +   L ++F ++     Y  G  ++  +    
Sbjct: 139 -ALMAKVQPYIGATWFVAQ-AAHVGYFLIHLALMVLFSVL----LYIHGEQVALGIRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                     +  +  K IR+  LG+ + A+ + ++ G    +AG+     L V+  I  
Sbjct: 193 MRAADKRGDAVVVMAAKAIRAVALGVVVTALVQAILGGIGLAIAGIQYATLLTVLMFICC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +   G  +      I++   G+    T L +W  I +  +D  LRP+L+     +P +  
Sbjct: 253 VAQLGPLLVLVPAVIWVYWTGDTTWGTILLVWSCI-VGTLDNFLRPYLIRMEADMPMILI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G++GG+ + G++GLFIGPV++A+   +    +    E +E ++ 
Sbjct: 312 LSGVIGGLLSFGMIGLFIGPVVLAISYRLISAWVHETPEPEESVTD 357


>gi|188533959|ref|YP_001907756.1| putative inner membrane protein [Erwinia tasmaniensis Et1/99]
 gi|188029001|emb|CAO96869.1| Conserved hypothetical protein (UPF0118) [Erwinia tasmaniensis
           Et1/99]
          Length = 374

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 138/319 (43%), Gaps = 20/319 (6%)

Query: 43  TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH 102
            +WP+   F        +   +  T+ ++ +FI+P+  L    +     L++   L + H
Sbjct: 47  ATWPLMIKFQRLLWGKRSLAVITMTLLLILVFIIPVALLVNSLIENSGPLIAW--LGSGH 104

Query: 103 -GIPVPRWLSDIPGGMWASELWTKH--LSHPQSLKILSET---FLKTNGIDFIPRFASRF 156
             +P  +W+  IP  +   +L++ +  L       +L++      +T G  F    A  F
Sbjct: 105 LQMPELQWMRSIP--LVGRKLYSAYHNLVAGGGTALLAQVQPYIGRTTGFFFAQ--AGHF 160

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
           G   +   L ++F ++     Y  G  + Q +      L          +  + IR+  L
Sbjct: 161 GRFMMHLGLMLLFSVL----LYWRGEQVGQGIRHFAFRLASRRGDAAVLLAAQAIRAVAL 216

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIF 276
           G+ + A+ + ++ G    ++G+P    L V+  +  ++  G  +      I+L   G+  
Sbjct: 217 GVVVTALVQAVLGGIGLAISGIPFATILTVLMILSCLVQLGPLVVLVPAIIWLYWSGDTT 276

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
             T L +W  + +  +D  LRP L+     LP +    G++GG+   G++GLFIGPV++A
Sbjct: 277 WGTVLLVWSCV-VGTLDNVLRPVLIRMGADLPMILILSGVIGGLIAFGMIGLFIGPVVLA 335

Query: 337 L---IAVIWKESIMAIKEN 352
           +   +  +W     A  E+
Sbjct: 336 ISYRLVSVWVHEAPAPHED 354


>gi|34497807|ref|NP_902022.1| hypothetical protein CV_2352 [Chromobacterium violaceum ATCC 12472]
 gi|34103663|gb|AAQ60024.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 364

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 66/348 (18%), Positives = 150/348 (43%), Gaps = 11/348 (3%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           ++  +++  L  L+ F   +  A II  ++WP+YS    +        A++  +++    
Sbjct: 21  ILALLVVACLKVLQPFLGALTWAAIIAISAWPLYSRLKLRLRGRHKLAALLIVLALSAAL 80

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPG-GMWASELW-TKHLSHPQ 131
            +P+  +       +  L +         +P  P WL+++P  G    +LW +     P 
Sbjct: 81  AIPIGLMALTLADTLPHLANLAHDLTSFRLPDAPAWLTNLPVVGDSLQKLWQSTQADLPG 140

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
             + +           ++    +  G+  L+  L+I    + L     +G  +   ++ +
Sbjct: 141 FFEKVRPAI--NQAALWLLSGGANLGLSLLEIVLAIAVAGLLLI----NGDKLWDLVERI 194

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L       +  ++ + IRS   G+   A+ + ++      +AGVP  + LG +  I+
Sbjct: 195 VVKLGGETAGDLPEVIARTIRSVTTGVVGTALAQTILCVIGLLIAGVPGALVLGFLCFIV 254

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           A+      + +   + ++   G+      L +WG + +  +D  L+P L+    ++P   
Sbjct: 255 AVAQMPTLVVWLPAAAWVFYTGHTGLGVFLLIWGFLLINTIDNILKPLLISQGAQMPLSV 314

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            F G++GG+   G++GLFIGP L+A+   + +  +   +E+ E+++  
Sbjct: 315 IFLGVIGGLIAWGVIGLFIGPTLLAVGLTMLRHWLQ--REDNEELACE 360


>gi|84393813|ref|ZP_00992559.1| putative permease [Vibrio splendidus 12B01]
 gi|84375553|gb|EAP92454.1| putative permease [Vibrio splendidus 12B01]
          Length = 361

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 153/352 (43%), Gaps = 49/352 (13%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +   ++ A II    +PI+     K       +++++ V +  + ++PLL +F       
Sbjct: 32  YVNSIVMAFIISLLMFPIHEWLEKKLPNKENIVSLLSCVILTFIIVIPLLAVF------- 84

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS--ETFLKTNGID 147
             +V +  L +Q+     +W++   GG+          +HP  +K LS    +L  + I+
Sbjct: 85  AAIVQQGSLFSQN---TYQWVTH--GGI------QTLFAHPLVVKALSFVNNYLPFDNIE 133

Query: 148 ------FIPRFASRFGMIFL-----------DYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                  +  FA+ FG   +           ++ +    M+  LFF  RD      ++ S
Sbjct: 134 PQAIAQKVGEFATSFGSKLVGISAKILGDATNFLMDFFLMLFVLFFLLRD----HDKIIS 189

Query: 191 LGEHLFP---AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  H+ P   +   K+   + +V +S  +G  + AI +G   G   W+AG P  +  G +
Sbjct: 190 VVRHILPLSRSQEDKLLTEIEQVSKSAVMGSFLTAIAQGFAGGLGMWIAGFPG-LFWGTM 248

Query: 248 TAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
               + IP  G  + +   + YL + G+   A  L ++    +  +D  LRP L+ G   
Sbjct: 249 MGFASFIPVVGTALIWIPAATYLFLTGDTTWAIFLTVYCVAIVGSIDNLLRPLLMQGSAG 308

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV---IWKESIMAIKENKEK 355
           +  L  FF L+GG++  GL+GL  GP++ A+  V   I+ E        ++K
Sbjct: 309 MNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITIVLFNIYDEEFKDFLNQQDK 360


>gi|148979051|ref|ZP_01815296.1| putative permease [Vibrionales bacterium SWAT-3]
 gi|145962024|gb|EDK27312.1| putative permease [Vibrionales bacterium SWAT-3]
          Length = 361

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 154/352 (43%), Gaps = 49/352 (13%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +   ++ A II    +PI+     K    +  +++++ V +  + ++PLL +F       
Sbjct: 32  YVNSIVMAFIISLLMFPIHEWLEKKIPNKANLVSLLSCVILTFIIVIPLLAVF------- 84

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS--ETFLKTNGID 147
             +V +  L +Q+     +W++   GG+           HP  +K LS    +L  + I+
Sbjct: 85  AAIVQQGSLFSQN---TYQWVTH--GGI------QTLFEHPIVVKALSFVNNYLPFDNIE 133

Query: 148 ------FIPRFASRFGMIFL-----------DYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                  +  FA+ FG   +           ++ +    M+  LFF  RD      ++ S
Sbjct: 134 PKAIAQKVGEFATSFGSKLVGISAKILGDATNFLMDFFLMLFVLFFLLRD----HDKIIS 189

Query: 191 LGEHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  H+ P    +  ++   + +V +S  +G  + AI +G+  G   W+AG P  +  G +
Sbjct: 190 VVRHILPLSRSQEDKLLAEIEQVSKSAVMGSFLTAIAQGIAGGFGMWIAGFPG-LFWGTM 248

Query: 248 TAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
               + IP  G  + +   + YL + G+   A  L ++    +  +D  LRP L+ G   
Sbjct: 249 MGFASFIPVVGTALIWIPAAAYLFLTGDTTWAIFLTVYCVAIVGSIDNLLRPLLMQGSAG 308

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV---IWKESIMAIKENKEK 355
           +  L  FF L+GG++  GL+GL  GP++ A+  V   I+ E        ++K
Sbjct: 309 MNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITIVLFNIYDEEFKDFLNQQDK 360


>gi|293605499|ref|ZP_06687881.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292816227|gb|EFF75326.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 354

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 149/342 (43%), Gaps = 17/342 (4%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           SLY L+ F   ++ A  I   +WP+    + ++     + A +  + ++ + IV  L+  
Sbjct: 4   SLYVLQPFLPGLIWATTIVVATWPVLL-VVQQRCGGRRWAATVVMLLILLVVIVLPLYQV 62

Query: 83  YYGMLEMKELVSKVV--LANQHGIPVPRWLSDIP--GGMWASELWTKHLSHPQSLKILSE 138
              + E    +   V  L +   +  P W+  +P  G   A E  T   +    L    E
Sbjct: 63  ISTLAEHSGAIMDAVKRLPDYTLLAPPGWIRSVPVAGPKLAQEWQTLSDAGAGGLLARLE 122

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
            +L T    ++   A+  G+  +   ++I+   I     Y  G + ++ +      L   
Sbjct: 123 PYL-TMAARWLLSHAAIVGVFVMHMLITIVISGI----LYSQGDAAAEFVKRFSNRLAGE 177

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI---P 255
                 R+    +R+  LG+ + A+ +  + G   W+AGVP   A G++TA+M M+    
Sbjct: 178 RGVAAVRLAGAAVRAVALGIVVTAVVQSALGGVGLWIAGVP---AAGILTALMVMLCLAQ 234

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G  +      I+L        A  L +W A+ + ++D  LRP L+   + L  L    G
Sbjct: 235 LGPFLPMLGGVIWLFQNDMRLAAILLLVW-ALIVAMLDNLLRPMLIKRGVNLSLLLILSG 293

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           ++GG+   G++GLFIGPV++A+ + + K  I  +      ++
Sbjct: 294 VLGGMFAFGIVGLFIGPVILAVTSTLLKAWIDEVPPPASTVA 335


>gi|254374014|ref|ZP_04989496.1| conserved hypothetical protein [Francisella novicida GA99-3548]
 gi|151571734|gb|EDN37388.1| conserved hypothetical protein [Francisella novicida GA99-3548]
          Length = 346

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 136/307 (44%), Gaps = 31/307 (10%)

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
              S+F+ VIA +  +C+FI PLL +  Y + E+   +      +Q    + + +++IP 
Sbjct: 59  RHKSSFIIVIAIL--LCIFI-PLLIVLSYVITEIISYLQHSESLSQTFSQLSKSIANIP- 114

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
             +      +H  +  ++    +  + +N    +P      G   +      +  ++ ++
Sbjct: 115 --YIGSTLQEHFDNLLNMVNQDKDMIISNLGKILPTI-RYIGFTSVSLVTDFLITLLLVY 171

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
            F     S+ + L  +    F      IS  +    R   L + + A+  G ++   + +
Sbjct: 172 QFLVSSTSLEKFLKKIVLKDFHDSDSFISAAIATT-RRVSLAIFLTAMLVGTIMTITFSM 230

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--- 292
            G+PS +  G I AI +M+P      F    IY+LI  ++F      ++GA +  I+   
Sbjct: 231 VGIPSPILFGFIAAIASMVP------FMVGIIYILIGASVF-----VIYGATKAIIILII 279

Query: 293 --------DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                   D  ++P ++   +KL F+ +  G++GG+   G +G+F+GPV+   +A +  E
Sbjct: 280 GFSLNIFTDNIMQPKIINKQVKLSFVASLIGIMGGIHAFGFIGIFLGPVIFN-VAFVGIE 338

Query: 345 SIMAIKE 351
            +M  +E
Sbjct: 339 KLMNNQE 345


>gi|170768895|ref|ZP_02903348.1| inner membrane protein YdiK [Escherichia albertii TW07627]
 gi|170122443|gb|EDS91374.1| inner membrane protein YdiK [Escherichia albertii TW07627]
          Length = 370

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 149/324 (45%), Gaps = 15/324 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +FI+P+
Sbjct: 23  MIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMVFIIPI 82

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT--KHLSHPQSLKIL 136
             L    +++    + K + +    +P   WL+ IP  +  ++L+    +L       I+
Sbjct: 83  -ALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIP--VIGAKLYAGWHNLLDMGGTAIM 139

Query: 137 SET--FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           ++   ++ T    F+ + A+  G   +   L ++F   +   ++R G  ++Q +      
Sbjct: 140 AKVRPYIGTTTTWFVGQ-AAHIGRFMMHCALMLLF---SALLYWR-GEQVAQGIRHFATR 194

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L          +  + IR+  LG+ + A+ + ++ G    +AGVP    L V+  +  ++
Sbjct: 195 LAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVAGVPYATLLTVLMILSCLV 254

Query: 255 P-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
             G  P+   A+ I+L   G+    T L +W  + +  +D  +RP L+     LP +   
Sbjct: 255 QLGPLPVLIPAI-IWLYWTGDTTWGTVLLVWSGV-VGTLDNIIRPMLIRMGADLPLILIL 312

Query: 314 FGLVGGVRTMGLLGLFIGPVLMAL 337
            G++GG+   G++GLFIGPVL+A+
Sbjct: 313 SGVIGGLIAFGMIGLFIGPVLLAV 336


>gi|86148147|ref|ZP_01066446.1| putative permease [Vibrio sp. MED222]
 gi|218710464|ref|YP_002418085.1| putative permease [Vibrio splendidus LGP32]
 gi|85834064|gb|EAQ52223.1| putative permease [Vibrio sp. MED222]
 gi|218323483|emb|CAV19660.1| putative permease [Vibrio splendidus LGP32]
          Length = 361

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 153/352 (43%), Gaps = 49/352 (13%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +   ++ A II    +PI+     K       +++++ V +  + ++PLL +F       
Sbjct: 32  YVNSIVMAFIISLLMFPIHEWLEKKIPNKENVVSLLSCVILTFIIVIPLLAVF------- 84

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS--ETFLKTNGID 147
             +V +  L +Q+     +W++   GG+          +HP  +K LS    +L  + I+
Sbjct: 85  AAIVQQGSLFSQN---TYQWVTH--GGI------QTLFAHPLVVKALSFVNNYLPFDNIE 133

Query: 148 ------FIPRFASRFGMIFL-----------DYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                  +  FA+ FG   +           ++ +    M+  LFF  RD      ++ S
Sbjct: 134 PQAIAQKVGEFATSFGSKLVGISAKILGDATNFLMDFFLMLFVLFFLLRD----HDKIIS 189

Query: 191 LGEHLFP---AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  H+ P   +   K+   + +V +S  +G  + AI +G   G   W+AG P  +  G +
Sbjct: 190 VVRHILPLSRSQEDKLLTEIEQVSKSAVMGSFLTAIAQGFAGGLGMWIAGFPG-LFWGTM 248

Query: 248 TAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
               + IP  G  + +   + YL + G+   A  L ++    +  +D  LRP L+ G   
Sbjct: 249 MGFASFIPVVGTALIWIPAATYLFLTGDTTWAIFLTVYCVAIVGSIDNLLRPLLMQGSAG 308

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV---IWKESIMAIKENKEK 355
           +  L  FF L+GG++  GL+GL  GP++ A+  V   I+ E        ++K
Sbjct: 309 MNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITIVLFNIYDEEFKDFLNQQDK 360


>gi|328675713|gb|AEB28388.1| conserved hypothetical protein [Francisella cf. novicida 3523]
          Length = 341

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 135/307 (43%), Gaps = 31/307 (10%)

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
              S+FL VIA +  +C+FI PLL +  Y + E+   +      +Q    + + +++IP 
Sbjct: 54  RHKSSFLIVIAIL--LCIFI-PLLIVLSYVITEIISYLQHSESLSQTFSQLSKSIANIP- 109

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
             +      +H     ++    +  + +N    +P      G   +      +  ++ ++
Sbjct: 110 --YIGTTLQEHFDKLLNMVNQDKNMIISNLGKILPTI-RYIGFTSVSLVTDFLITLLLVY 166

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
            F     S+ + L  +    F      IS  +    R   L + + A+  G ++   + +
Sbjct: 167 QFLVSSTSLEKFLKKIVLKDFHDSDSFISAAIATT-RRVSLAIFLTAMLVGCIMTITFSM 225

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--- 292
            G+PS +  G I AI +M+P      F    +Y+LI  ++F      ++GA +  I+   
Sbjct: 226 VGIPSPILFGFIAAIASMVP------FMVGIVYILIGASVF-----VIYGATKAIIILII 274

Query: 293 --------DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                   D  ++P ++   +KL F+ +  G++GG+   G +G+F+GPV+   +A +  E
Sbjct: 275 GFSLNIFTDNIMQPKIINKQVKLSFVASLIGIMGGIHAFGFIGIFLGPVIFN-VAFVGIE 333

Query: 345 SIMAIKE 351
            +M  +E
Sbjct: 334 KLMNNQE 340


>gi|299146703|ref|ZP_07039771.1| conserved hypothetical protein [Bacteroides sp. 3_1_23]
 gi|298517194|gb|EFI41075.1| conserved hypothetical protein [Bacteroides sp. 3_1_23]
          Length = 341

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 12/200 (6%)

Query: 141 LKTNGIDFIPRFASRFGMIFLD----YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           L  + + FI     R G I ++      +++  MI  L+F    G    +++++    + 
Sbjct: 119 LGKDTLSFIMSILPRIGQIIMESISSLAINLFVMIFVLYFMLIGG----KKMEAYVNDIL 174

Query: 197 PAYWKKISRIVPKV---IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           P        ++ ++   +RS  +G+ ++AI +G V    Y L G P+ + LG +T    +
Sbjct: 175 PFNETNTQEVIHEINMIVRSNAIGIPLLAIIQGGVAMIGYLLFGAPNILMLGFLTCFATI 234

Query: 254 IPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP  G  + +  V+ YL I G+ FNA  LF +GAI +   D  +R  L         L T
Sbjct: 235 IPMVGTALVWFPVATYLAISGDWFNAIGLFGYGAIVVSQSDNLIRFILQKKMADTHPLIT 294

Query: 313 FFGLVGGVRTMGLLGLFIGP 332
            FG+V G+   G +G+  GP
Sbjct: 295 IFGVVIGLPIFGFMGVIFGP 314


>gi|303246658|ref|ZP_07332936.1| protein of unknown function UPF0118 [Desulfovibrio fructosovorans
           JJ]
 gi|302491998|gb|EFL51876.1| protein of unknown function UPF0118 [Desulfovibrio fructosovorans
           JJ]
          Length = 371

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 88/181 (48%), Gaps = 9/181 (4%)

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI---VPKVIRSTFLGMTII 221
           ++ + +I  LFF  RDG ++  ++     +L P    +  RI   +  V +S  LG  +I
Sbjct: 167 MNFVILIFVLFFLIRDGEAMLARV----RYLLPLSTDQEDRIFRQLDDVAKSVILGAFLI 222

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATC 280
           A+ +G   G   ++ G+      G +    ++IP  G  I +  V++YL++ G       
Sbjct: 223 ALAQGAAGGLGLFIVGIQPFF-WGCMMGFASLIPVVGTAIIWLPVALYLIVTGQWQWGVF 281

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           L  WGA+ +  +D  +RP L+    K+     F  ++GG++  G LG+  GP+++    V
Sbjct: 282 LIAWGALVVSSIDSIMRPILMRNRSKMSTFWVFLAIIGGIKFFGALGILYGPLVLGFAMV 341

Query: 341 I 341
           +
Sbjct: 342 M 342


>gi|150402189|ref|YP_001329483.1| hypothetical protein MmarC7_0262 [Methanococcus maripaludis C7]
 gi|150033219|gb|ABR65332.1| protein of unknown function UPF0118 [Methanococcus maripaludis C7]
          Length = 334

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 100/198 (50%), Gaps = 14/198 (7%)

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI----VPKVIRSTFLGMTI 220
           + ++F+    F+F +DG    +  DS   ++ P   K+ ++I    + K +++ F+G  +
Sbjct: 144 MKLLFLSFMTFYFLKDG---DRMQDSFMLYV-PTEKKENAKIFLNEIHKALKTLFIGNAV 199

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNA 278
            ++  G +    YWL G+P+ + LG ++ I+ ++P  GG  I +  ++IY L+ G I   
Sbjct: 200 TSVIVGFISIIGYWLIGIPNPITLGALSGILNILPVVGGWTI-YVPLTIYYLLTGEIVKG 258

Query: 279 TCLFLWGAIELFIV-DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
             L L+G I L +  D  +RP ++     L         + G    G+ GL IGP+++A 
Sbjct: 259 ILLGLFGIIFLSLAPDFAIRPRVISKDGDLHPAFVLIAFLIGPLVFGIPGLAIGPIIVAT 318

Query: 338 IAVIWKESIMAIKENKEK 355
           +  I K  +    EN+EK
Sbjct: 319 VYAIHK--VRKSIENREK 334


>gi|329115312|ref|ZP_08244066.1| UPF0118 inner membrane protein YdiK [Acetobacter pomorum DM001]
 gi|326695291|gb|EGE46978.1| UPF0118 inner membrane protein YdiK [Acetobacter pomorum DM001]
          Length = 360

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 114/230 (49%), Gaps = 6/230 (2%)

Query: 123 WTKHLSHPQSLKILSETFLKTNGI-DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           W +HL + + + I+ +   + + I  ++  +A   GM+ + + L++I + +   F  +  
Sbjct: 135 WWQHLQNMKPMDIVQQAVPQPDQIMHYLMSYAGSIGMLAVQFLLTLIILTV---FLAKAE 191

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
           + I+     +G  L     + +  +  + IR   LG+T+ AI E LV G   +L GVP  
Sbjct: 192 YLITTSERLVGT-LSGKRGQNMLELAVRTIRGVALGVTLTAIVESLVGGGGMYLTGVPWA 250

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             L  +T +  ++  G  ++     I++     +  A  L     + +F+ D  LRP+L+
Sbjct: 251 SILTAVTFMACLLQAGPGVTLFPAVIWVYFDKGVMPAIVLLAITFLTIFL-DNMLRPYLI 309

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
                +P +    G++GG+  +GL G+F+GP+++++   + K+ + + +E
Sbjct: 310 RKQADVPLVLIMMGVIGGLAALGLAGIFVGPMILSITYTLIKQWMESNQE 359


>gi|160886195|ref|ZP_02067198.1| hypothetical protein BACOVA_04202 [Bacteroides ovatus ATCC 8483]
 gi|237723005|ref|ZP_04553486.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|260173678|ref|ZP_05760090.1| hypothetical protein BacD2_17520 [Bacteroides sp. D2]
 gi|315921940|ref|ZP_07918180.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156108080|gb|EDO09825.1| hypothetical protein BACOVA_04202 [Bacteroides ovatus ATCC 8483]
 gi|229447527|gb|EEO53318.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|313695815|gb|EFS32650.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 341

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 12/200 (6%)

Query: 141 LKTNGIDFIPRFASRFGMIFLD----YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           L  + + FI     R G I ++      +++  MI  L+F    G    +++++    + 
Sbjct: 119 LGKDTLSFIMSILPRIGQIIMESISSLAINLFVMIFVLYFMLIGG----KKMEAYVNDIL 174

Query: 197 PAYWKKISRIVPKV---IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           P        ++ ++   +RS  +G+ ++AI +G V    Y L G P+ + LG +T    +
Sbjct: 175 PFNETNTQEVIHEINMIVRSNAIGIPLLAIIQGGVAMIGYLLFGAPNILMLGFLTCFATI 234

Query: 254 IPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP  G  + +  V+ YL I G+ FNA  LF +GAI +   D  +R  L         L T
Sbjct: 235 IPMVGTALVWFPVAAYLAISGDWFNAIGLFGYGAIVVSQSDNLIRFILQKKMADTHPLIT 294

Query: 313 FFGLVGGVRTMGLLGLFIGP 332
            FG+V G+   G +G+  GP
Sbjct: 295 IFGVVIGLPIFGFMGVIFGP 314


>gi|254372555|ref|ZP_04988044.1| conserved hypothetical protein [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570282|gb|EDN35936.1| conserved hypothetical protein [Francisella novicida GA99-3549]
          Length = 346

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 136/307 (44%), Gaps = 31/307 (10%)

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
              S+F+ VIA +  +C+FI PLL +  Y + E+   +      +Q    + + +++IP 
Sbjct: 59  RHKSSFIIVIAIL--LCIFI-PLLVVISYVITEIISYLQHSESLSQTFSQLSKSIANIP- 114

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
             +      +H  +  ++    +  + +N    +P      G   +      +  ++ ++
Sbjct: 115 --YIGSTLQEHFDNLLNMVNQDKDMIISNLGKILPTI-RYIGFTSVSLVTDFLITLLLVY 171

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
            F     S+ + L  +    F      IS  +    R   L + + A+  G ++   + +
Sbjct: 172 QFLVSSTSLEKFLKKIVLKDFHDSDSFISAAIATT-RRVSLAIFLTAMLVGTIMTITFSM 230

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--- 292
            G+PS +  G I AI +M+P      F    IY+LI  ++F      ++GA +  I+   
Sbjct: 231 VGIPSPILFGFIAAIASMVP------FMVGIIYILIGASVF-----VIYGATKAIIILII 279

Query: 293 --------DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                   D  ++P ++   +KL F+ +  G++GG+   G +G+F+GPV+   +A +  E
Sbjct: 280 GFSLNIFTDNIMQPKIINKQVKLSFVASLIGIMGGIHAFGFIGIFLGPVIFN-VAFVGIE 338

Query: 345 SIMAIKE 351
            +M  +E
Sbjct: 339 KLMNNQE 345


>gi|327398765|ref|YP_004339634.1| hypothetical protein Hipma_0605 [Hippea maritima DSM 10411]
 gi|327181394|gb|AEA33575.1| protein of unknown function UPF0118 [Hippea maritima DSM 10411]
          Length = 338

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 89/189 (47%), Gaps = 7/189 (3%)

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           +F  I  F+  RD       + S+ +     Y  KI + +   I +T LG  + A  +G+
Sbjct: 153 LFSFIIAFYLIRDADDFLNYISSIIDDKESFY--KILKSIRDSINATVLGGVLTAFIQGI 210

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           +    + + G+ +      + A+ + +P  G  + +   +IYLLI G       +  WG+
Sbjct: 211 IGAIGFLIVGLNAFFLWMFLIAMFSFVPLVGTAVIWIPAAIYLLISGAYIKGAFILAWGS 270

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           + +  VD   RP ++   I +  +  FFG++G +   G +G+ +GPV++++  V+ K  +
Sbjct: 271 LAIGTVDNYFRPIIISSKINIHSMVLFFGILGSIVVFGPIGIILGPVIISVGDVLVKTYV 330

Query: 347 MAIKENKEK 355
                NK K
Sbjct: 331 ----SNKAK 335


>gi|194323489|ref|ZP_03057266.1| domain protein of unknown function, putative [Francisella
           tularensis subsp. novicida FTE]
 gi|194322344|gb|EDX19825.1| domain protein of unknown function, putative [Francisella
           tularensis subsp. novicida FTE]
          Length = 341

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 136/307 (44%), Gaps = 31/307 (10%)

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
              S+F+ VIA +  +C+FI PLL +  Y + E+   +      +Q    + + +++IP 
Sbjct: 54  RHKSSFIIVIAIL--LCIFI-PLLVVISYVITEIISYLQHSESLSQTFSQLSKSIANIP- 109

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
             +      +H  +  ++    +  + +N    +P      G   +      +  ++ ++
Sbjct: 110 --YIGSTLQEHFDNLLNMVNQDKDIIISNLGKILPTI-RYIGFTSVSLVTDFLITLLLVY 166

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
            F     S+ + L  +    F      IS  +    R   L + + A+  G ++   + +
Sbjct: 167 QFLVSSTSLEKFLKKIVLKDFHDSDSFISAAIATT-RRVSLAIFLTAMLVGTIMTITFSM 225

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--- 292
            G+PS +  G I AI +M+P      F    IY+LI  ++F      ++GA +  I+   
Sbjct: 226 VGIPSPILFGFIAAIASMVP------FMVGIIYILIGASVF-----VIYGATKAIIILII 274

Query: 293 --------DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                   D  ++P ++   +KL F+ +  G++GG+   G +G+F+GPV+   +A +  E
Sbjct: 275 GFSLNIFTDNIMQPKIINKQVKLSFVASLIGIMGGIHAFGFIGIFLGPVIFN-VAFVGIE 333

Query: 345 SIMAIKE 351
            +M  +E
Sbjct: 334 KLMNNQE 340


>gi|325111313|ref|YP_004272381.1| hypothetical protein Plabr_4788 [Planctomyces brasiliensis DSM
           5305]
 gi|324971581|gb|ADY62359.1| protein of unknown function UPF0118 [Planctomyces brasiliensis DSM
           5305]
          Length = 459

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 79/366 (21%), Positives = 151/366 (41%), Gaps = 56/366 (15%)

Query: 39  IIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVL 98
           ++   + P+Y+ F+ + +   T  A +AT +++   I+PL      G L++   V+   L
Sbjct: 74  VVALIAQPVYNYFLKRTKNRPTVAAGMATGTIVAAVIIPLFIGITVGALQL--FVAAEQL 131

Query: 99  ANQHGIPVPRWLSDIPGG-------MWASELWT------KHLSHPQSLKILSETFLKT-- 143
            +     V R +  +  G       +W  + +       +     + LK   E  L+   
Sbjct: 132 LDDE--TVQRTIDTVKQGEIYESVIVWGEQFFPIVTAEYQDRYSEEDLKEWREEVLEQRA 189

Query: 144 --------NGIDFIPRFASRFGMIFLD---------YCLSIIFMIIALFFFYRDGFSISQ 186
                   NG+  +       G  F             + +I  ++AL++F+ +G ++ Q
Sbjct: 190 ENLRESVQNGLKRLAVITFSAGTAFTTVDILAKTGWTLMGLITFVMALYYFFCEGPNLLQ 249

Query: 187 QLDSL-------GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
               L          LF  +   I      V+ +TFL     A+ +G+    A W  G  
Sbjct: 250 HAIDLIPVDVNHQRTLFQEFGTSIR----AVVSATFLA----ALAQGIATSVALWALGFG 301

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
                 ++    A+IP  G  + +   ++YL  +G+   A  L ++G   +  +D  +R 
Sbjct: 302 HFFLFTIVATFSALIPLAGTWLVWLPCAVYLAYQGSWIWALLLAVYGFGLVGTLDNIIRA 361

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV----LMALIAVIWKESIMAIKENKE 354
           +++    KL  L  F  ++GG++ MGL G+FI PV    L ALI +  +E +   +  +E
Sbjct: 362 YVLHSDAKLHPLLAFVSVLGGLQVMGLWGVFIAPVVASCLYALIRIFNEELVDISRLQRE 421

Query: 355 KISSNF 360
           +  +NF
Sbjct: 422 RPPANF 427


>gi|158521116|ref|YP_001528986.1| hypothetical protein Dole_1102 [Desulfococcus oleovorans Hxd3]
 gi|158509942|gb|ABW66909.1| protein of unknown function UPF0118 [Desulfococcus oleovorans Hxd3]
          Length = 365

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 5/161 (3%)

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPK---VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            Q+L     HL P   +  + ++ K   V RS  LG  + A+ +G   G A+ + G+P  
Sbjct: 188 QQRLYDYILHLVPMSAEHETVLIQKMKDVSRSAVLGSFLTALAQGAAGGLAFAICGMPGF 247

Query: 242 VALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              G + A  ++IP  G  + +   + YLLI G I     L +W  + + ++D  LRP  
Sbjct: 248 F-WGAVMAFASLIPVVGTALVWVPAAAYLLISGKIGLGVFLIIWCVVVVGMIDNLLRPLF 306

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           + G   +  +  FF ++GG+   GL+GL  GP++  +  V+
Sbjct: 307 MRGGAGMSTVVIFFAILGGIHLFGLIGLIYGPLIFGITMVM 347


>gi|208778982|ref|ZP_03246328.1| hypothetical membrane protein [Francisella novicida FTG]
 gi|208744782|gb|EDZ91080.1| hypothetical membrane protein [Francisella novicida FTG]
 gi|328676661|gb|AEB27531.1| hypothetical protein FNFX1_0583 [Francisella cf. novicida Fx1]
          Length = 341

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 136/307 (44%), Gaps = 31/307 (10%)

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
              S+F+ VIA +  +C+FI PLL +  Y + E+   +      +Q    + + +++IP 
Sbjct: 54  RHKSSFIIVIAIL--LCIFI-PLLVVISYVITEIISYLQHSESLSQTFSQLSKSIANIP- 109

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
             +      +H  +  ++    +  + +N    +P      G   +      +  ++ ++
Sbjct: 110 --YIGSTLQEHFDNLLNMVNQDKDMIISNLGKILPTI-RYIGFTSVSLVTDFLITLLLVY 166

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
            F     S+ + L  +    F      IS  +    R   L + + A+  G ++   + +
Sbjct: 167 QFLVSSTSLEKFLKKIVLKDFHDSDSFISAAIATT-RRVSLAIFLTAMLVGTIMTITFSM 225

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--- 292
            G+PS +  G I AI +M+P      F    IY+LI  ++F      ++GA +  I+   
Sbjct: 226 VGIPSPILFGFIAAIASMVP------FMVGIIYILIGASVF-----VIYGATKAIIILII 274

Query: 293 --------DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                   D  ++P ++   +KL F+ +  G++GG+   G +G+F+GPV+   +A +  E
Sbjct: 275 GFSLNIFTDNIMQPKIINKQVKLSFVASLIGIMGGIHAFGFIGIFLGPVIFN-VAFVGIE 333

Query: 345 SIMAIKE 351
            +M  +E
Sbjct: 334 KLMNNQE 340


>gi|118497190|ref|YP_898240.1| hypothetical protein FTN_0591 [Francisella tularensis subsp.
           novicida U112]
 gi|118423096|gb|ABK89486.1| conserved hypothetical membrane protein [Francisella novicida U112]
          Length = 346

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 136/307 (44%), Gaps = 31/307 (10%)

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
              S+F+ VIA +  +C+FI PLL +  Y + E+   +      +Q    + + +++IP 
Sbjct: 59  RHKSSFIIVIAIL--LCIFI-PLLVVISYVITEIISYLQHSESLSQTFSQLSKSIANIP- 114

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
             +      +H  +  ++    +  + +N    +P      G   +      +  ++ ++
Sbjct: 115 --YIGSTLQEHFDNLLNMVNQDKDIIISNLGKILPTI-RYIGFTSVSLVTDFLITLLLVY 171

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
            F     S+ + L  +    F      IS  +    R   L + + A+  G ++   + +
Sbjct: 172 QFLVSSTSLEKFLKKIVLKDFHDSDSFISAAIATT-RRVSLAIFLTAMLVGTIMTITFSM 230

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--- 292
            G+PS +  G I AI +M+P      F    IY+LI  ++F      ++GA +  I+   
Sbjct: 231 VGIPSPILFGFIAAIASMVP------FMVGIIYILIGASVF-----VIYGATKAIIILII 279

Query: 293 --------DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                   D  ++P ++   +KL F+ +  G++GG+   G +G+F+GPV+   +A +  E
Sbjct: 280 GFSLNIFTDNIMQPKIINKQVKLSFVASLIGIMGGIHAFGFIGIFLGPVIFN-VAFVGIE 338

Query: 345 SIMAIKE 351
            +M  +E
Sbjct: 339 KLMNNQE 345


>gi|16760543|ref|NP_456160.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29141696|ref|NP_805038.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213052909|ref|ZP_03345787.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213612364|ref|ZP_03370190.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213646713|ref|ZP_03376766.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|289825924|ref|ZP_06545083.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25307060|pir||AH0703 probable membrane protein STY1759 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16502839|emb|CAD02001.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137324|gb|AAO68887.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 372

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 104/221 (47%), Gaps = 11/221 (4%)

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
           ++ T  I F+ + A+  G   +   L ++F   +   ++R G  ++  +      L    
Sbjct: 145 YIGTTTIWFVGQ-AAHIGRFMMHCALMLLF---SALLYWR-GEQVAMGIRHFACRLAAKR 199

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGA 258
                 +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  ++  G  
Sbjct: 200 GDAAVLLAAQAIRAVALGVVVTALVQAVLGGVGLAISGVPYATLLTVVMILSCLVQLGPL 259

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P+   A+ I+L   G+    T L +W A+ +  +D  +RP L+     LP L    G++G
Sbjct: 260 PVLIPAI-IWLYWTGDTTWGTVLLVWSAV-VGTLDNVIRPVLIRMGADLPLLLILSGVIG 317

Query: 319 GVRTMGLLGLFIGPVLMALIAVI---WKESIMAIKENKEKI 356
           G+   G++GLFIGPVL+A+   +   W   + A     E+I
Sbjct: 318 GLIAFGMIGLFIGPVLLAVTWRLFSAWVHEVPAPTNEPEEI 358


>gi|213581770|ref|ZP_03363596.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 370

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 104/221 (47%), Gaps = 11/221 (4%)

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
           ++ T  I F+ + A+  G   +   L ++F   +   ++R G  ++  +      L    
Sbjct: 143 YIGTTTIWFVGQ-AAHIGRFMMHCALMLLF---SALLYWR-GEQVAMGIRHFACRLAAKR 197

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGA 258
                 +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  ++  G  
Sbjct: 198 GDAAVLLAAQAIRAVALGVVVTALVQAVLGGVGLAISGVPYATLLTVVMILSCLVQLGPL 257

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P+   A+ I+L   G+    T L +W A+ +  +D  +RP L+     LP L    G++G
Sbjct: 258 PVLIPAI-IWLYWTGDTTWGTVLLVWSAV-VGTLDNVIRPVLIRMGADLPLLLILSGVIG 315

Query: 319 GVRTMGLLGLFIGPVLMALIAVI---WKESIMAIKENKEKI 356
           G+   G++GLFIGPVL+A+   +   W   + A     E+I
Sbjct: 316 GLIAFGMIGLFIGPVLLAVTWRLFSAWVHEVPAPTNEPEEI 356


>gi|238782558|ref|ZP_04626589.1| hypothetical protein yberc0001_22080 [Yersinia bercovieri ATCC
           43970]
 gi|238716485|gb|EEQ08466.1| hypothetical protein yberc0001_22080 [Yersinia bercovieri ATCC
           43970]
          Length = 367

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 73/357 (20%), Positives = 150/357 (42%), Gaps = 26/357 (7%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I+ +I+ S + ++ F      A ++   +WP+               A+I T+ ++ LF+
Sbjct: 21  ILIMIIASFWVVQPFIMGFAWAGMVVIATWPLLIRLQKILWGKRWLAALIMTLLLVLLFV 80

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP--GGMWASELWTKHLSHPQSL 133
           +P+  L    +     L+      +   +P   WL  +P  G    S   T       ++
Sbjct: 81  IPIALLVSSLVQNSGPLIQWASSPSNLRMPDVTWLQSVPMVGNKLYSSWHTLIAGGGNAI 140

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS----QQLD 189
               + ++       + + A+  G   +   L ++F ++  F   + G  I     +  D
Sbjct: 141 IAKVQPYVGAAATWLVAQ-AAHIGYFLIHLALMVLFSVLLYFHGEQVGLGIRHFAVRAAD 199

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
             G+         +  +  K IR+  LG+ + A+ + ++ G    +AG+       V+  
Sbjct: 200 KRGD--------AVVVLAAKAIRAVALGVVVTALVQAVLGGIGLAIAGIQYATLFTVLMF 251

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I  +   G  +      I+L   G+    T L +W  I +  +D  LRP+L+     +P 
Sbjct: 252 ICCVAQLGPLLILVPAIIWLYWTGDTTWGTVLLVWSCI-VGTMDNVLRPYLIRMEADMPM 310

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMAL---IAVIW-------KESIMAIKENKEKI 356
           +    G++GG+ + G++GLFIGPV++A+   +   W       +ESI  + ++ E++
Sbjct: 311 ILILSGVIGGLLSFGMIGLFIGPVVLAISYRLTAAWVSEAPEPEESITEVAKHLEEL 367


>gi|260597659|ref|YP_003210230.1| putative inner membrane protein [Cronobacter turicensis z3032]
 gi|260216836|emb|CBA30340.1| UPF0118 inner membrane protein ydiK [Cronobacter turicensis z3032]
          Length = 375

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 82/364 (22%), Positives = 165/364 (45%), Gaps = 17/364 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVS-LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           +R+ M  PQ ++  + + +++++ L+ ++ F      A  +   +WP+    + K     
Sbjct: 7   LRQPMDVPQILLSVLFLSVMIIACLWIVQPFILGFAWAGTVVIATWPLLLR-LQKMLWGR 65

Query: 60  TFLAVIATVSVMC-LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
             LAV+  V ++  LF++P+  L    +++        + + Q  IP   WL  IP    
Sbjct: 66  RSLAVLVMVLILIMLFVIPVALLVN-SLVDSSGPFIHWLTSGQMTIPDLAWLHSIPYIGD 124

Query: 119 ASELWTKHLSHPQSLKILSET--FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
              L   +L       I+++   +L T    FI + A+  G + +   L ++F  +    
Sbjct: 125 KLYLGWHNLVESGGSAIMAKVRPYLGTTTGWFIGQ-AAHLGRLLMHCGLMLLFSAL---- 179

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
            Y  G  ++  +      L          +  + IR+  LG+ + A+ +G++ G    ++
Sbjct: 180 LYWRGEQVALGIRHFAIRLASKRGDAAVVLAGQAIRAVALGVVVTALVQGVLGGIGLAIS 239

Query: 237 GVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
           G+P    L V+  +  ++  G  P+   A+ I+L   G+    T L +W A+ +  +D  
Sbjct: 240 GIPYATLLTVVMILSCLVQLGPLPVLVPAI-IWLYWSGDATWGTVLLVWSAV-VGTLDNI 297

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL---IAVIWKESIMAIKEN 352
           +RP L+     LP +    G++GG+   G++GLFIGPVL+A+   +  +W       +EN
Sbjct: 298 IRPMLIRMGADLPMVLILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFSVWVSEAPLPEEN 357

Query: 353 KEKI 356
            + +
Sbjct: 358 SKTV 361


>gi|168233553|ref|ZP_02658611.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194472682|ref|ZP_03078666.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|238910820|ref|ZP_04654657.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|194459046|gb|EDX47885.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205332357|gb|EDZ19121.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 372

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 79/152 (51%), Gaps = 6/152 (3%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
           + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  ++  G  P+   A+ I
Sbjct: 209 QAIRAVALGVVVTALVQAVLGGVGLAISGVPYATLLTVVMILSCLVQLGPLPVLIPAI-I 267

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +L   G+    T L +W AI +  +D  +RP L+     LP L    G++GG+   G++G
Sbjct: 268 WLYWTGDTTWGTVLLVWSAI-VGTLDNVIRPVLIRMGADLPLLLILSGVIGGLIAFGMIG 326

Query: 328 LFIGPVLMALIAVI---WKESIMAIKENKEKI 356
           LFIGPVL+A+   +   W   + A     E+I
Sbjct: 327 LFIGPVLLAVTWRLFSAWVHEVPAPTNEPEEI 358


>gi|218558557|ref|YP_002391470.1| inner membrane protein [Escherichia coli S88]
 gi|218365326|emb|CAR03047.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli S88]
          Length = 370

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 148/324 (45%), Gaps = 15/324 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +FI+P+
Sbjct: 23  MIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMVFIIPI 82

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT--KHLSHPQSLKIL 136
             L    +++    + K + +    +P   WL+ IP  +  ++L+    +L       I+
Sbjct: 83  -ALLVNSIVDGSGPLIKAISSGNMTLPDLAWLNTIP--VIGAKLYAGWHNLLDMGGTAIM 139

Query: 137 SET--FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           ++   ++ T    F+ + A+  G  F+ +C     M++     Y  G  ++Q +      
Sbjct: 140 AKVRPYIGTTTTWFVGQ-AAHIGR-FMVHC---ALMLLFSALLYWRGEQVAQGIRHFATR 194

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  ++
Sbjct: 195 LAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSCLV 254

Query: 255 P-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
             G  P+   A+ I+L   G+    T L +W  + +  +D  +RP L+     LP +   
Sbjct: 255 QLGPLPVLIPAI-IWLYWTGDTTWGTVLLVWSGV-VGTLDNVIRPMLIRMGADLPLILIL 312

Query: 314 FGLVGGVRTMGLLGLFIGPVLMAL 337
            G++GG+   G++GLFIGPVL+A+
Sbjct: 313 SGVIGGLIAFGMIGLFIGPVLLAV 336


>gi|222874438|gb|EEF11569.1| predicted protein [Populus trichocarpa]
          Length = 143

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 2/109 (1%)

Query: 249 AIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A ++++P  GA + +  V+IY L  G +     L  +G + + +VD  LRP LVG   K+
Sbjct: 2   AFLSLLPAVGAGLIWAPVAIYFLATGAVGKGVILIAYGVLVIGLVDNVLRPLLVGKDTKM 61

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE-SIMAIKENKEK 355
           P        +GG+   GL G  IGPV+ AL   IW   S M +++ +++
Sbjct: 62  PDYIVLISTLGGMALFGLTGFVIGPVIAALFMAIWDMFSRMQVQDEEKR 110


>gi|26247938|ref|NP_753978.1| putative inner membrane protein [Escherichia coli CFT073]
 gi|110641809|ref|YP_669539.1| putative inner membrane protein [Escherichia coli 536]
 gi|191171652|ref|ZP_03033199.1| inner membrane protein YdiK [Escherichia coli F11]
 gi|218689630|ref|YP_002397842.1| putative inner membrane protein [Escherichia coli ED1a]
 gi|218699747|ref|YP_002407376.1| putative inner membrane protein [Escherichia coli IAI39]
 gi|227885892|ref|ZP_04003697.1| inner membrane protein [Escherichia coli 83972]
 gi|300938988|ref|ZP_07153686.1| hypothetical protein HMPREF9530_03822 [Escherichia coli MS 21-1]
 gi|300987762|ref|ZP_07178340.1| hypothetical protein HMPREF9553_03359 [Escherichia coli MS 200-1]
 gi|300994853|ref|ZP_07180966.1| hypothetical protein HMPREF9531_05248 [Escherichia coli MS 45-1]
 gi|301050981|ref|ZP_07197827.1| hypothetical protein HMPREF9549_04881 [Escherichia coli MS 185-1]
 gi|331673244|ref|ZP_08374012.1| putative permease [Escherichia coli TA280]
 gi|26108341|gb|AAN80543.1|AE016761_118 Hypothetical protein ydiK [Escherichia coli CFT073]
 gi|110343401|gb|ABG69638.1| hypothetical protein YdiK [Escherichia coli 536]
 gi|190907982|gb|EDV67574.1| inner membrane protein YdiK [Escherichia coli F11]
 gi|218369733|emb|CAR17504.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli IAI39]
 gi|218427194|emb|CAR08080.2| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli ED1a]
 gi|227837465|gb|EEJ47931.1| inner membrane protein [Escherichia coli 83972]
 gi|281178758|dbj|BAI55088.1| putative transport protein [Escherichia coli SE15]
 gi|284921609|emb|CBG34681.1| putative membrane protein [Escherichia coli 042]
 gi|300297358|gb|EFJ53743.1| hypothetical protein HMPREF9549_04881 [Escherichia coli MS 185-1]
 gi|300306050|gb|EFJ60570.1| hypothetical protein HMPREF9553_03359 [Escherichia coli MS 200-1]
 gi|300406193|gb|EFJ89731.1| hypothetical protein HMPREF9531_05248 [Escherichia coli MS 45-1]
 gi|300456091|gb|EFK19584.1| hypothetical protein HMPREF9530_03822 [Escherichia coli MS 21-1]
 gi|307553709|gb|ADN46484.1| predicted inner membrane protein YdiK [Escherichia coli ABU 83972]
 gi|315290535|gb|EFU49909.1| hypothetical protein HMPREF9544_05061 [Escherichia coli MS 153-1]
 gi|320195417|gb|EFW70042.1| Putative membrane protein [Escherichia coli WV_060327]
 gi|324007042|gb|EGB76261.1| hypothetical protein HMPREF9532_03276 [Escherichia coli MS 57-2]
 gi|324011447|gb|EGB80666.1| hypothetical protein HMPREF9533_04541 [Escherichia coli MS 60-1]
 gi|331069442|gb|EGI40829.1| putative permease [Escherichia coli TA280]
          Length = 370

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 148/324 (45%), Gaps = 15/324 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +FI+P+
Sbjct: 23  MIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMVFIIPI 82

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT--KHLSHPQSLKIL 136
             L    +++    + K + +    +P   WL+ IP  +  ++L+    +L       I+
Sbjct: 83  -ALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIP--VIGAKLYAGWHNLLDMGGTAIM 139

Query: 137 SET--FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           ++   ++ T    F+ + A+  G  F+ +C     M++     Y  G  ++Q +      
Sbjct: 140 AKVRPYIGTTTTWFVGQ-AAHIGR-FMVHC---ALMLLFSALLYWRGEQVAQGIRHFATR 194

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  ++
Sbjct: 195 LAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSCLV 254

Query: 255 P-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
             G  P+   A+ I+L   G+    T L +W  + +  +D  +RP L+     LP +   
Sbjct: 255 QLGPLPVLIPAI-IWLYWTGDTTWGTVLLVWSGV-VGTLDNVIRPMLIRMGADLPLILIL 312

Query: 314 FGLVGGVRTMGLLGLFIGPVLMAL 337
            G++GG+   G++GLFIGPVL+A+
Sbjct: 313 SGVIGGLIAFGMIGLFIGPVLLAV 336


>gi|289807066|ref|ZP_06537695.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 355

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 102/221 (46%), Gaps = 11/221 (4%)

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
           ++ T  I F+ + A+  G   +   L ++F  +     Y  G  ++  +      L    
Sbjct: 132 YIGTTTIWFVGQ-AAHIGRFMMHCALMLLFSAL----LYWRGEQVAMGIRHFACRLAAKR 186

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGA 258
                 +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  ++  G  
Sbjct: 187 GDAAVLLAAQAIRAVALGVVVTALVQAVLGGVGLAISGVPYATLLTVVMILSCLVQLGPL 246

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P+   A+ I+L   G+    T L +W A+ +  +D  +RP L+     LP L    G++G
Sbjct: 247 PVLIPAI-IWLYWTGDTTWGTVLLVWSAV-VGTLDNVIRPVLIRMGADLPLLLILSGVIG 304

Query: 319 GVRTMGLLGLFIGPVLMALIAVI---WKESIMAIKENKEKI 356
           G+   G++GLFIGPVL+A+   +   W   + A     E+I
Sbjct: 305 GLIAFGMIGLFIGPVLLAVTWRLFSAWVHEVPAPTNEPEEI 345


>gi|168240872|ref|ZP_02665804.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205339094|gb|EDZ25858.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 395

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 79/152 (51%), Gaps = 6/152 (3%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
           + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  ++  G  P+   A+ I
Sbjct: 209 QAIRAVALGVVVTALVQAVLGGVGLAISGVPYATLLTVVMILSCLVQLGPLPVLIPAI-I 267

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +L   G+    T L +W A+ +  +D  +RP L+     LP L    G++GG+   G++G
Sbjct: 268 WLYWTGDTTWGTVLLVWSAV-VGTLDNVIRPVLIRMGADLPLLLILSGVIGGLIAFGMIG 326

Query: 328 LFIGPVLMALIAVI---WKESIMAIKENKEKI 356
           LFIGPVL+A+   +   W   + A     E+I
Sbjct: 327 LFIGPVLLAVTWRLFSAWVHEVPAPTNEPEEI 358


>gi|194434783|ref|ZP_03067033.1| inner membrane protein YdiK [Shigella dysenteriae 1012]
 gi|194416952|gb|EDX33071.1| inner membrane protein YdiK [Shigella dysenteriae 1012]
 gi|332093944|gb|EGI98997.1| hypothetical protein SD15574_1835 [Shigella dysenteriae 155-74]
          Length = 370

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 148/324 (45%), Gaps = 15/324 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +FI+P+
Sbjct: 23  MIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMVFIIPI 82

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT--KHLSHPQSLKIL 136
             L    +++    + K + +    +P   WL+ IP  +  ++L+    +L       I+
Sbjct: 83  -ALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIP--VIGAKLYAGWHNLLDMGGTAIM 139

Query: 137 SET--FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           ++   ++ T    F+ + A+  G  F+ +C     M++     Y  G  ++Q +      
Sbjct: 140 AKVRPYIGTTTTWFVGQ-AAHIGR-FMVHC---ALMLLFSALLYWRGEQVAQGIRHFATR 194

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  ++
Sbjct: 195 LAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSCLV 254

Query: 255 P-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
             G  P+   A+ I+L   G+    T L +W  + +  +D  +RP L+     LP +   
Sbjct: 255 QLGPLPVLIPAI-IWLYWTGDTTWGTVLLVWSGV-VGTLDNVIRPMLIRMGADLPLILIL 312

Query: 314 FGLVGGVRTMGLLGLFIGPVLMAL 337
            G++GG+   G++GLFIGPVL+A+
Sbjct: 313 SGVIGGLIAFGMIGLFIGPVLLAV 336


>gi|320175148|gb|EFW50259.1| putative membrane protein [Shigella dysenteriae CDC 74-1112]
          Length = 370

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 148/324 (45%), Gaps = 15/324 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +FI+P+
Sbjct: 23  MIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMVFIIPI 82

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT--KHLSHPQSLKIL 136
             L    +++    + K + +    +P   WL+ IP  +  ++L+    +L       I+
Sbjct: 83  -ALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIP--VIGAKLYAGWHNLLDMGGTAIM 139

Query: 137 SET--FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           ++   ++ T    F+ + A+  G  F+ +C     M++     Y  G  ++Q +      
Sbjct: 140 AKVRPYIGTTTTWFVGQ-AAHIGR-FMVHC---ALMLLFSALLYWRGEQVAQGIRHFATR 194

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  ++
Sbjct: 195 LAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSCLV 254

Query: 255 P-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
             G  P+   A+ I+L   G+    T L +W  + +  +D  +RP L+     LP +   
Sbjct: 255 QLGPLPVLIPAI-IWLYWTGDTTWGTVLLVWSGV-VGTLDNVIRPMLIRMGADLPLILIL 312

Query: 314 FGLVGGVRTMGLLGLFIGPVLMAL 337
            G++GG+   G++GLFIGPVL+A+
Sbjct: 313 SGVIGGLIAFGMIGLFIGPVLLAV 336


>gi|118616069|ref|YP_904401.1| hypothetical protein MUL_0177 [Mycobacterium ulcerans Agy99]
 gi|118568179|gb|ABL02930.1| conserved hypothetical transmembrane protein [Mycobacterium
           ulcerans Agy99]
          Length = 385

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 144/333 (43%), Gaps = 29/333 (8%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           +L   YFL+ +F  ++ A +  +   P+++ F   K  ++   A +  ++ + + IVP+ 
Sbjct: 21  LLFGAYFLRSYFVLIVVAAVGAYLFTPLFNWF--NKRLNAGLSATLTLLTALVVVIVPVG 78

Query: 80  FLFYYGMLEMKELVSKVV----------LANQHGIPVPRWLSDIP---GGMWASELWTKH 126
            L    ++++  +V  +           L ++    V   L+ +P     + A  L    
Sbjct: 79  LLVGLAVVQIARMVENIAGWVKTTDLSSLGDKALQLVNELLARVPFLHVTVTAEALRQMM 138

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +S  Q++ +    FL+           S  G+IFL       ++ +AL        ++  
Sbjct: 139 ISVAQNVGLWLLHFLQNAAGSLAGAVTS--GIIFL-------YVFMALLLNCEKLRTLIG 189

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL-G 245
           QL+ LGE +   Y +K+  +V    R T +G  +IA+ +G+   ++ ++AG      +  
Sbjct: 190 QLNPLGEEVTDLYLRKMGSMV----RGTVIGQFVIALCQGVAGAASIYVAGFHHGFFIFA 245

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++   M++IP G  I      I +   GNI     + LW  + +  +D  LRP LV    
Sbjct: 246 IVLTAMSIIPLGGGIVTIPFGIGMAFYGNIGGGAFVVLWHLLVVTNIDNFLRPVLVPRDA 305

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           +L           G+   G  G+ IGPVLM LI
Sbjct: 306 RLNSALMLTSAFAGIGMFGPWGIIIGPVLMILI 338


>gi|258542555|ref|YP_003187988.1| transporter [Acetobacter pasteurianus IFO 3283-01]
 gi|256633633|dbj|BAH99608.1| transporter [Acetobacter pasteurianus IFO 3283-01]
 gi|256636692|dbj|BAI02661.1| transporter [Acetobacter pasteurianus IFO 3283-03]
 gi|256639745|dbj|BAI05707.1| transporter [Acetobacter pasteurianus IFO 3283-07]
 gi|256642801|dbj|BAI08756.1| transporter [Acetobacter pasteurianus IFO 3283-22]
 gi|256645856|dbj|BAI11804.1| transporter [Acetobacter pasteurianus IFO 3283-26]
 gi|256648909|dbj|BAI14850.1| transporter [Acetobacter pasteurianus IFO 3283-32]
 gi|256651896|dbj|BAI17830.1| transporter [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654953|dbj|BAI20880.1| transporter [Acetobacter pasteurianus IFO 3283-12]
          Length = 360

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 115/231 (49%), Gaps = 6/231 (2%)

Query: 123 WTKHLSHPQSLKILSETFLKTNGI-DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           W +HL + + + I+ +   + + I  ++  +A   GM+ + + L+   +II   F  +  
Sbjct: 135 WWQHLQNMKPMDIVQQAVPQPDQIMHYLMSYAGSIGMLAVQFLLT---LIILAAFLAKAE 191

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
           + I+     +G  L     +++  +  + IR   LG+T+ AI E LV G   +L GVP  
Sbjct: 192 YLITTSEKLVGT-LSGKRGQEMLELAVRTIRGVALGVTLTAIVESLVGGGGMYLTGVPWA 250

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             L  +T +  ++  G  I+     I++     +  A  L     + +F+ D  LRP+L+
Sbjct: 251 SILTAVTFMACLLQAGPGITLFPAVIWVYFDKGMVPAIVLLAITFLTIFL-DNMLRPYLI 309

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
                +P +    G++GG+  +GL G+F+GP+++++   + K+ + + +E+
Sbjct: 310 RKQADVPLVLIMMGVIGGLAALGLAGIFVGPMILSITYTLIKQWMESNQES 360


>gi|16129644|ref|NP_416203.1| inner membrane protein, UPF0118 family [Escherichia coli str. K-12
           substr. MG1655]
 gi|24113077|ref|NP_707587.1| putative inner membrane protein [Shigella flexneri 2a str. 301]
 gi|30063202|ref|NP_837373.1| putative inner membrane protein [Shigella flexneri 2a str. 2457T]
 gi|82543942|ref|YP_407889.1| inner membrane protein [Shigella boydii Sb227]
 gi|82776939|ref|YP_403288.1| putative inner membrane protein [Shigella dysenteriae Sd197]
 gi|89108528|ref|AP_002308.1| predicted inner membrane protein [Escherichia coli str. K-12
           substr. W3110]
 gi|91210901|ref|YP_540887.1| putative inner membrane protein [Escherichia coli UTI89]
 gi|110805665|ref|YP_689185.1| putative inner membrane protein [Shigella flexneri 5 str. 8401]
 gi|117623867|ref|YP_852780.1| putative inner membrane protein [Escherichia coli APEC O1]
 gi|157157163|ref|YP_001462982.1| putative inner membrane protein [Escherichia coli E24377A]
 gi|157161153|ref|YP_001458471.1| putative inner membrane protein [Escherichia coli HS]
 gi|170019962|ref|YP_001724916.1| putative inner membrane protein [Escherichia coli ATCC 8739]
 gi|170081348|ref|YP_001730668.1| inner membrane protein [Escherichia coli str. K-12 substr. DH10B]
 gi|187732656|ref|YP_001880447.1| putative inner membrane protein [Shigella boydii CDC 3083-94]
 gi|188492403|ref|ZP_02999673.1| putative membrane protein [Escherichia coli 53638]
 gi|191167867|ref|ZP_03029672.1| inner membrane protein YdiK [Escherichia coli B7A]
 gi|193065271|ref|ZP_03046343.1| inner membrane protein YdiK [Escherichia coli E22]
 gi|193068945|ref|ZP_03049904.1| inner membrane protein YdiK [Escherichia coli E110019]
 gi|194429510|ref|ZP_03062032.1| inner membrane protein YdiK [Escherichia coli B171]
 gi|194438554|ref|ZP_03070643.1| inner membrane protein YdiK [Escherichia coli 101-1]
 gi|209919002|ref|YP_002293086.1| putative inner membrane protein [Escherichia coli SE11]
 gi|218554254|ref|YP_002387167.1| hypothetical protein ECIAI1_1740 [Escherichia coli IAI1]
 gi|218695249|ref|YP_002402916.1| putative inner membrane protein [Escherichia coli 55989]
 gi|237705634|ref|ZP_04536115.1| inner membrane protein YdiK [Escherichia sp. 3_2_53FAA]
 gi|238900903|ref|YP_002926699.1| putative inner membrane protein [Escherichia coli BW2952]
 gi|253773356|ref|YP_003036187.1| inner membrane protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161749|ref|YP_003044857.1| putative inner membrane protein [Escherichia coli B str. REL606]
 gi|256018118|ref|ZP_05431983.1| putative inner membrane protein [Shigella sp. D9]
 gi|256022649|ref|ZP_05436514.1| putative inner membrane protein [Escherichia sp. 4_1_40B]
 gi|260843994|ref|YP_003221772.1| putative inner membrane protein [Escherichia coli O103:H2 str.
           12009]
 gi|260855512|ref|YP_003229403.1| putative inner membrane protein [Escherichia coli O26:H11 str.
           11368]
 gi|293415004|ref|ZP_06657647.1| inner membrane protein [Escherichia coli B185]
 gi|293446062|ref|ZP_06662484.1| inner membrane protein [Escherichia coli B088]
 gi|300818325|ref|ZP_07098535.1| hypothetical protein HMPREF9345_03403 [Escherichia coli MS 107-1]
 gi|300821439|ref|ZP_07101586.1| hypothetical protein HMPREF9346_01266 [Escherichia coli MS 119-7]
 gi|300904539|ref|ZP_07122378.1| hypothetical protein HMPREF9536_02615 [Escherichia coli MS 84-1]
 gi|300918058|ref|ZP_07134679.1| hypothetical protein HMPREF9540_01865 [Escherichia coli MS 115-1]
 gi|300924723|ref|ZP_07140669.1| hypothetical protein HMPREF9548_02850 [Escherichia coli MS 182-1]
 gi|300930842|ref|ZP_07146212.1| hypothetical protein HMPREF9550_03100 [Escherichia coli MS 187-1]
 gi|300951280|ref|ZP_07165129.1| hypothetical protein HMPREF9541_04601 [Escherichia coli MS 116-1]
 gi|300958569|ref|ZP_07170699.1| hypothetical protein HMPREF9547_04277 [Escherichia coli MS 175-1]
 gi|301027867|ref|ZP_07191168.1| hypothetical protein HMPREF9551_03793 [Escherichia coli MS 196-1]
 gi|301303203|ref|ZP_07209329.1| hypothetical protein HMPREF9347_01794 [Escherichia coli MS 124-1]
 gi|301326548|ref|ZP_07219889.1| hypothetical protein HMPREF9535_01500 [Escherichia coli MS 78-1]
 gi|301647871|ref|ZP_07247653.1| hypothetical protein HMPREF9543_04379 [Escherichia coli MS 146-1]
 gi|306815059|ref|ZP_07449215.1| putative inner membrane protein [Escherichia coli NC101]
 gi|307138347|ref|ZP_07497703.1| putative inner membrane protein [Escherichia coli H736]
 gi|307310741|ref|ZP_07590387.1| protein of unknown function UPF0118 [Escherichia coli W]
 gi|309788635|ref|ZP_07683235.1| conserved hypothetical protein [Shigella dysenteriae 1617]
 gi|309793455|ref|ZP_07687882.1| hypothetical protein HMPREF9348_00614 [Escherichia coli MS 145-7]
 gi|331642286|ref|ZP_08343421.1| putative permease [Escherichia coli H736]
 gi|331647179|ref|ZP_08348273.1| putative permease [Escherichia coli M605]
 gi|331653088|ref|ZP_08354093.1| putative permease [Escherichia coli M718]
 gi|331657665|ref|ZP_08358627.1| putative permease [Escherichia coli TA206]
 gi|331668373|ref|ZP_08369221.1| putative permease [Escherichia coli TA271]
 gi|331683195|ref|ZP_08383796.1| putative permease [Escherichia coli H299]
 gi|84027918|sp|P0AFS7|YDIK_ECOLI RecName: Full=UPF0118 inner membrane protein ydiK
 gi|84027919|sp|P0AFS8|YDIK_SHIFL RecName: Full=UPF0118 inner membrane protein ydiK
 gi|1742759|dbj|BAA15450.1| predicted inner membrane protein [Escherichia coli str. K12 substr.
           W3110]
 gi|1787979|gb|AAC74758.1| inner membrane protein, UPF0118 family [Escherichia coli str. K-12
           substr. MG1655]
 gi|24052052|gb|AAN43294.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30041454|gb|AAP17182.1| hypothetical protein S1850 [Shigella flexneri 2a str. 2457T]
 gi|81241087|gb|ABB61797.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|81245353|gb|ABB66061.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|91072475|gb|ABE07356.1| putative purine regulated protein YdiK [Escherichia coli UTI89]
 gi|110615213|gb|ABF03880.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|115512991|gb|ABJ01066.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|157066833|gb|ABV06088.1| inner membrane protein YdiK [Escherichia coli HS]
 gi|157079193|gb|ABV18901.1| inner membrane protein YdiK [Escherichia coli E24377A]
 gi|169754890|gb|ACA77589.1| protein of unknown function UPF0118 [Escherichia coli ATCC 8739]
 gi|169889183|gb|ACB02890.1| predicted inner membrane protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|187429648|gb|ACD08922.1| inner membrane protein YdiK [Shigella boydii CDC 3083-94]
 gi|188487602|gb|EDU62705.1| putative membrane protein [Escherichia coli 53638]
 gi|190902126|gb|EDV61870.1| inner membrane protein YdiK [Escherichia coli B7A]
 gi|192927065|gb|EDV81687.1| inner membrane protein YdiK [Escherichia coli E22]
 gi|192957740|gb|EDV88184.1| inner membrane protein YdiK [Escherichia coli E110019]
 gi|194412474|gb|EDX28774.1| inner membrane protein YdiK [Escherichia coli B171]
 gi|194422564|gb|EDX38562.1| inner membrane protein YdiK [Escherichia coli 101-1]
 gi|209912261|dbj|BAG77335.1| putative transport protein [Escherichia coli SE11]
 gi|218351981|emb|CAU97713.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli 55989]
 gi|218361022|emb|CAQ98597.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli IAI1]
 gi|222033444|emb|CAP76185.1| UPF0118 inner membrane protein ydiK [Escherichia coli LF82]
 gi|226900391|gb|EEH86650.1| inner membrane protein YdiK [Escherichia sp. 3_2_53FAA]
 gi|238862554|gb|ACR64552.1| predicted inner membrane protein [Escherichia coli BW2952]
 gi|253324400|gb|ACT29002.1| protein of unknown function UPF0118 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973650|gb|ACT39321.1| predicted inner membrane protein [Escherichia coli B str. REL606]
 gi|253977844|gb|ACT43514.1| predicted inner membrane protein [Escherichia coli BL21(DE3)]
 gi|257754161|dbj|BAI25663.1| predicted inner membrane protein [Escherichia coli O26:H11 str.
           11368]
 gi|257759141|dbj|BAI30638.1| predicted inner membrane protein [Escherichia coli O103:H2 str.
           12009]
 gi|260449189|gb|ACX39611.1| protein of unknown function UPF0118 [Escherichia coli DH1]
 gi|281601125|gb|ADA74109.1| inner membrane protein ydiK [Shigella flexneri 2002017]
 gi|291322892|gb|EFE62320.1| inner membrane protein [Escherichia coli B088]
 gi|291432652|gb|EFF05631.1| inner membrane protein [Escherichia coli B185]
 gi|294492598|gb|ADE91354.1| inner membrane protein YdiK [Escherichia coli IHE3034]
 gi|299879023|gb|EFI87234.1| hypothetical protein HMPREF9551_03793 [Escherichia coli MS 196-1]
 gi|300314778|gb|EFJ64562.1| hypothetical protein HMPREF9547_04277 [Escherichia coli MS 175-1]
 gi|300403533|gb|EFJ87071.1| hypothetical protein HMPREF9536_02615 [Escherichia coli MS 84-1]
 gi|300414749|gb|EFJ98059.1| hypothetical protein HMPREF9540_01865 [Escherichia coli MS 115-1]
 gi|300419101|gb|EFK02412.1| hypothetical protein HMPREF9548_02850 [Escherichia coli MS 182-1]
 gi|300449461|gb|EFK13081.1| hypothetical protein HMPREF9541_04601 [Escherichia coli MS 116-1]
 gi|300461317|gb|EFK24810.1| hypothetical protein HMPREF9550_03100 [Escherichia coli MS 187-1]
 gi|300525942|gb|EFK47011.1| hypothetical protein HMPREF9346_01266 [Escherichia coli MS 119-7]
 gi|300528965|gb|EFK50027.1| hypothetical protein HMPREF9345_03403 [Escherichia coli MS 107-1]
 gi|300841612|gb|EFK69372.1| hypothetical protein HMPREF9347_01794 [Escherichia coli MS 124-1]
 gi|300846768|gb|EFK74528.1| hypothetical protein HMPREF9535_01500 [Escherichia coli MS 78-1]
 gi|301074012|gb|EFK88818.1| hypothetical protein HMPREF9543_04379 [Escherichia coli MS 146-1]
 gi|305851707|gb|EFM52160.1| putative inner membrane protein [Escherichia coli NC101]
 gi|306908919|gb|EFN39415.1| protein of unknown function UPF0118 [Escherichia coli W]
 gi|308123042|gb|EFO60304.1| hypothetical protein HMPREF9348_00614 [Escherichia coli MS 145-7]
 gi|308923457|gb|EFP68964.1| conserved hypothetical protein [Shigella dysenteriae 1617]
 gi|309701913|emb|CBJ01225.1| putative membrane protein [Escherichia coli ETEC H10407]
 gi|312946288|gb|ADR27115.1| putative inner membrane protein [Escherichia coli O83:H1 str. NRG
           857C]
 gi|313648970|gb|EFS13407.1| hypothetical protein SF2457T_2635 [Shigella flexneri 2a str. 2457T]
 gi|313848654|emb|CAQ32163.2| predicted inner membrane protein [Escherichia coli BL21(DE3)]
 gi|315060993|gb|ADT75320.1| predicted inner membrane protein [Escherichia coli W]
 gi|315136329|dbj|BAJ43488.1| putative inner membrane protein [Escherichia coli DH1]
 gi|315257509|gb|EFU37477.1| putative membrane protein [Escherichia coli MS 85-1]
 gi|315286386|gb|EFU45822.1| hypothetical protein HMPREF9539_03668 [Escherichia coli MS 110-3]
 gi|315299716|gb|EFU58956.1| hypothetical protein HMPREF9545_01227 [Escherichia coli MS 16-3]
 gi|315618883|gb|EFU99466.1| conserved hypothetical protein [Escherichia coli 3431]
 gi|320181288|gb|EFW56207.1| Putative membrane protein [Shigella boydii ATCC 9905]
 gi|320184437|gb|EFW59245.1| Putative membrane protein [Shigella flexneri CDC 796-83]
 gi|320197870|gb|EFW72478.1| Putative membrane protein [Escherichia coli EC4100B]
 gi|323153078|gb|EFZ39347.1| hypothetical protein ECEPECA14_5161 [Escherichia coli EPECa14]
 gi|323163462|gb|EFZ49288.1| hypothetical protein ECE128010_0313 [Escherichia coli E128010]
 gi|323170001|gb|EFZ55657.1| hypothetical protein ECLT68_5645 [Escherichia coli LT-68]
 gi|323186039|gb|EFZ71395.1| hypothetical protein ECOK1357_0501 [Escherichia coli 1357]
 gi|323378435|gb|ADX50703.1| protein of unknown function UPF0118 [Escherichia coli KO11]
 gi|323937291|gb|EGB33570.1| ydiK protein [Escherichia coli E1520]
 gi|323940645|gb|EGB36836.1| ydiK protein [Escherichia coli E482]
 gi|323948016|gb|EGB44008.1| ydiK protein [Escherichia coli H120]
 gi|323952195|gb|EGB48068.1| ydiK protein [Escherichia coli H252]
 gi|323973932|gb|EGB69104.1| ydiK protein [Escherichia coli TA007]
 gi|324016518|gb|EGB85737.1| hypothetical protein HMPREF9542_04862 [Escherichia coli MS 117-3]
 gi|324119172|gb|EGC13060.1| ydiK protein [Escherichia coli E1167]
 gi|330911495|gb|EGH40005.1| putative membrane protein [Escherichia coli AA86]
 gi|331039084|gb|EGI11304.1| putative permease [Escherichia coli H736]
 gi|331043962|gb|EGI16098.1| putative permease [Escherichia coli M605]
 gi|331049186|gb|EGI21258.1| putative permease [Escherichia coli M718]
 gi|331055913|gb|EGI27922.1| putative permease [Escherichia coli TA206]
 gi|331063567|gb|EGI35478.1| putative permease [Escherichia coli TA271]
 gi|331079410|gb|EGI50607.1| putative permease [Escherichia coli H299]
 gi|332090828|gb|EGI95920.1| hypothetical protein SB521682_1834 [Shigella boydii 5216-82]
 gi|332096073|gb|EGJ01078.1| hypothetical protein SB359474_1615 [Shigella boydii 3594-74]
 gi|332101515|gb|EGJ04861.1| inner membrane protein YdiK [Shigella sp. D9]
          Length = 370

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 148/324 (45%), Gaps = 15/324 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +FI+P+
Sbjct: 23  MIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMVFIIPI 82

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT--KHLSHPQSLKIL 136
             L    +++    + K + +    +P   WL+ IP  +  ++L+    +L       I+
Sbjct: 83  -ALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIP--VIGAKLYAGWHNLLDMGGTAIM 139

Query: 137 SET--FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           ++   ++ T    F+ + A+  G  F+ +C     M++     Y  G  ++Q +      
Sbjct: 140 AKVRPYIGTTTTWFVGQ-AAHIGR-FMVHC---ALMLLFSALLYWRGEQVAQGIRHFATR 194

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  ++
Sbjct: 195 LAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSCLV 254

Query: 255 P-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
             G  P+   A+ I+L   G+    T L +W  + +  +D  +RP L+     LP +   
Sbjct: 255 QLGPLPVLIPAI-IWLYWTGDTTWGTVLLVWSGV-VGTLDNVIRPMLIRMGADLPLILIL 312

Query: 314 FGLVGGVRTMGLLGLFIGPVLMAL 337
            G++GG+   G++GLFIGPVL+A+
Sbjct: 313 SGVIGGLIAFGMIGLFIGPVLLAV 336


>gi|183984335|ref|YP_001852626.1| hypothetical protein MMAR_4364 [Mycobacterium marinum M]
 gi|183177661|gb|ACC42771.1| conserved hypothetical transmembrane protein [Mycobacterium marinum
           M]
          Length = 385

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 144/333 (43%), Gaps = 29/333 (8%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           +L   YFL+ +F  ++ A +  +   P+++ F   K  ++   A +  ++ + + IVP+ 
Sbjct: 21  LLFGAYFLRSYFVLIVVAAVGAYLFTPLFNWF--NKRLNAGLSATLTLLTALVVVIVPVG 78

Query: 80  FLFYYGMLEMKELVSKVV----------LANQHGIPVPRWLSDIP---GGMWASELWTKH 126
            L    ++++  +V  +           L ++    V   L+ +P     + A  L    
Sbjct: 79  LLVGLAVVQIARMVENIAGWVKTTDLSSLGDKALQLVNELLARVPFLHVTVTAEALRKMM 138

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +S  Q++      FL+           S  G+IFL       ++ +AL        ++  
Sbjct: 139 ISVAQNVGQWLLHFLQNAAGSLAGAVTS--GIIFL-------YVFMALLLNREKLRTLIG 189

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL-G 245
           QL+ LGE +   Y +K+  +V    R T +G  +IA+ +G+   ++ ++AG      +  
Sbjct: 190 QLNPLGEEVTDLYLRKMGSMV----RGTVIGQFVIALCQGVAGAASIYVAGFHHGFFIFA 245

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++   M++IP G  I      I +   GNI     + LW  + +  +D  LRP LV    
Sbjct: 246 ILLTAMSIIPLGGGIVTIPFGIGMAFYGNIGGGAFVVLWHLLVVTNIDNFLRPILVPRDA 305

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           +L        +  G+   G  G+ IGPVLM LI
Sbjct: 306 RLNSALMLMSVFAGIGMFGPWGIIIGPVLMILI 338


>gi|134302427|ref|YP_001122397.1| hypothetical protein FTW_1565 [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134050204|gb|ABO47275.1| hypothetical membrane protein [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 341

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 136/307 (44%), Gaps = 31/307 (10%)

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
              S+F+ VIA +  +C+FI PLL +  Y + E+   +      +Q    + + +++IP 
Sbjct: 54  RHKSSFIIVIAIL--LCIFI-PLLIVLSYVITEIISYLQHSESLSQTFSQLSKSIANIP- 109

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
             +      +H  +  ++    +  + +N    +P      G   +      +  ++ ++
Sbjct: 110 --YIGSTLQEHFDNLLNMVNQDKDMIISNLGKILPTI-RYIGFTSVSLLTDFLITLLLVY 166

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
            F     S+ + L  +    F      IS  +    R   L + + A+  G ++   + +
Sbjct: 167 QFLVSSTSLEKFLKKIILKDFHDSDSFISAAIATT-RRVSLAIFLTAMLVGTMMTITFSM 225

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--- 292
            G+PS +  G I AI +M+P      F    IY+LI  ++F      ++GA +  I+   
Sbjct: 226 VGIPSPILFGFIAAIASMVP------FMVGIIYILIGASVF-----VIYGATKAIIILII 274

Query: 293 --------DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                   D  ++P ++   +KL F+ +  G++GG+   G +G+F+GPV+   +A +  E
Sbjct: 275 GFSLNIFTDNIMQPKIINKQVKLSFVASLIGIMGGIHAFGFIGIFLGPVIFN-VAFVGIE 333

Query: 345 SIMAIKE 351
            +M  +E
Sbjct: 334 KLMNNQE 340


>gi|213428578|ref|ZP_03361328.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
          Length = 333

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 99/205 (48%), Gaps = 11/205 (5%)

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
           ++ T  I F+ + A+  G   +   L ++F   +   ++R G  ++  +      L    
Sbjct: 106 YIGTTTIWFVGQ-AAHIGRFMMHCALMLLF---SALLYWR-GEQVAMGIRHFACRLAAKR 160

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGA 258
                 +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  ++  G  
Sbjct: 161 GDAAVLLAAQAIRAVALGVVVTALVQAVLGGVGLAISGVPYATLLTVVMILSCLVQLGPL 220

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P+   A+ I+L   G+    T L +W A+ +  +D  +RP L+     LP L    G++G
Sbjct: 221 PVLIPAI-IWLYWTGDTTWGTVLLVWSAV-VGTLDNVIRPVLIRMGADLPLLLILSGVIG 278

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWK 343
           G+   G++GLFIGPVL+   AV W+
Sbjct: 279 GLIAFGMIGLFIGPVLL---AVTWR 300


>gi|15802100|ref|NP_288122.1| putative inner membrane protein [Escherichia coli O157:H7 EDL933]
 gi|15831649|ref|NP_310422.1| inner membrane protein [Escherichia coli O157:H7 str. Sakai]
 gi|168751901|ref|ZP_02776923.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4113]
 gi|168756686|ref|ZP_02781693.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4401]
 gi|168762251|ref|ZP_02787258.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4501]
 gi|168770447|ref|ZP_02795454.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4486]
 gi|168775015|ref|ZP_02800022.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4196]
 gi|168782100|ref|ZP_02807107.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4076]
 gi|168789822|ref|ZP_02814829.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC869]
 gi|168800134|ref|ZP_02825141.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC508]
 gi|195937372|ref|ZP_03082754.1| putative inner membrane protein [Escherichia coli O157:H7 str.
           EC4024]
 gi|208810488|ref|ZP_03252364.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4206]
 gi|208816562|ref|ZP_03257682.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4045]
 gi|208820705|ref|ZP_03261025.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4042]
 gi|209397418|ref|YP_002270757.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4115]
 gi|217328985|ref|ZP_03445066.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. TW14588]
 gi|254793305|ref|YP_003078142.1| putative inner membrane protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|261227867|ref|ZP_05942148.1| putative inner membrane protein [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261258399|ref|ZP_05950932.1| putative inner membrane protein [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291282818|ref|YP_003499636.1| Inner membrane protein YdiK [Escherichia coli O55:H7 str. CB9615]
 gi|12515693|gb|AAG56675.1|AE005392_1 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13361862|dbj|BAB35818.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187769380|gb|EDU33224.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4196]
 gi|188014138|gb|EDU52260.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4113]
 gi|189000250|gb|EDU69236.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4076]
 gi|189356127|gb|EDU74546.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4401]
 gi|189360631|gb|EDU79050.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4486]
 gi|189367449|gb|EDU85865.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4501]
 gi|189370582|gb|EDU88998.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC869]
 gi|189377566|gb|EDU95982.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC508]
 gi|208725004|gb|EDZ74711.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4206]
 gi|208730905|gb|EDZ79594.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4045]
 gi|208740828|gb|EDZ88510.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4042]
 gi|209158818|gb|ACI36251.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4115]
 gi|209769108|gb|ACI82866.1| hypothetical protein ECs2395 [Escherichia coli]
 gi|209769110|gb|ACI82867.1| hypothetical protein ECs2395 [Escherichia coli]
 gi|209769112|gb|ACI82868.1| hypothetical protein ECs2395 [Escherichia coli]
 gi|209769114|gb|ACI82869.1| hypothetical protein ECs2395 [Escherichia coli]
 gi|209769116|gb|ACI82870.1| hypothetical protein ECs2395 [Escherichia coli]
 gi|217318332|gb|EEC26759.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. TW14588]
 gi|254592705|gb|ACT72066.1| predicted inner membrane protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|290762691|gb|ADD56652.1| Inner membrane protein YdiK [Escherichia coli O55:H7 str. CB9615]
 gi|320188374|gb|EFW63036.1| Putative membrane protein [Escherichia coli O157:H7 str. EC1212]
 gi|320641903|gb|EFX11271.1| putative inner membrane protein [Escherichia coli O157:H7 str.
           G5101]
 gi|320647359|gb|EFX16167.1| putative inner membrane protein [Escherichia coli O157:H- str.
           493-89]
 gi|320652653|gb|EFX20922.1| putative inner membrane protein [Escherichia coli O157:H- str. H
           2687]
 gi|320653038|gb|EFX21234.1| putative inner membrane protein [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320658722|gb|EFX26399.1| putative inner membrane protein [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320668712|gb|EFX35517.1| putative inner membrane protein [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326342053|gb|EGD65834.1| Putative membrane protein [Escherichia coli O157:H7 str. 1044]
 gi|326343605|gb|EGD67367.1| Putative membrane protein [Escherichia coli O157:H7 str. 1125]
          Length = 370

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 148/324 (45%), Gaps = 15/324 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +FI+P+
Sbjct: 23  MIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMVFIIPI 82

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT--KHLSHPQSLKIL 136
             L    +++    + K + +    +P   WL+ IP  +  ++L+    +L       I+
Sbjct: 83  -ALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIP--VIGAKLYAGWHNLLDMGGTAIM 139

Query: 137 SET--FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           ++   ++ T    F+ + A+  G  F+ +C     M++     Y  G  ++Q +      
Sbjct: 140 AKVRPYIGTTTTWFVGQ-AAHIGR-FMVHC---ALMLLFSALLYWRGEQVAQGIRHFATR 194

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  ++
Sbjct: 195 LAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSCLV 254

Query: 255 P-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
             G  P+   A+ I+L   G+    T L +W  + +  +D  +RP L+     LP +   
Sbjct: 255 QLGPLPVLIPAI-IWLYWTGDTTWGTVLLVWSGV-VGTLDNVIRPMLIRMGADLPLILIL 312

Query: 314 FGLVGGVRTMGLLGLFIGPVLMAL 337
            G++GG+   G++GLFIGPVL+A+
Sbjct: 313 SGVIGGLIAFGMIGLFIGPVLLAV 336


>gi|187932032|ref|YP_001892017.1| hypothetical protein FTM_1403 [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712941|gb|ACD31238.1| conserved hypothetical membrane protein [Francisella tularensis
           subsp. mediasiatica FSC147]
          Length = 346

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 136/307 (44%), Gaps = 31/307 (10%)

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
              S+F+ VIA +  +C+FI PLL +  Y + E+   +      +Q    + + +++IP 
Sbjct: 59  RHKSSFIIVIAIL--LCIFI-PLLIVLSYVITEIISYLQHSESLSQTFSQLSKSIANIP- 114

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
             +      +H  +  ++    +  + +N    +P      G   +      +  ++ ++
Sbjct: 115 --YIGSTLQEHFDNLLNMVNQDKDMIISNLGKILPTI-RYIGFTSVSLLTDFLITLLLVY 171

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
            F     S+ + L  +    F      IS  +    R   L + + A+  G ++   + +
Sbjct: 172 QFLVSSTSLEKFLKKIILKDFHDSDSFISAAIATT-RRVSLAIFLTAMLVGTMMTITFSM 230

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--- 292
            G+PS +  G I AI +M+P      F    IY+LI  ++F      ++GA +  I+   
Sbjct: 231 VGIPSPILFGFIAAIASMVP------FMVGIIYILIGASVF-----VIYGATKAIIILII 279

Query: 293 --------DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                   D  ++P ++   +KL F+ +  G++GG+   G +G+F+GPV+   +A +  E
Sbjct: 280 GFSLNIFTDNIMQPKIINKQVKLSFVASLIGIMGGIHAFGFIGIFLGPVIFN-VAFVGIE 338

Query: 345 SIMAIKE 351
            +M  +E
Sbjct: 339 KLMNNQE 345


>gi|16764714|ref|NP_460329.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|167551672|ref|ZP_02345426.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167994384|ref|ZP_02575476.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168263810|ref|ZP_02685783.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168463230|ref|ZP_02697161.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|194443331|ref|YP_002040620.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194447864|ref|YP_002045370.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194734868|ref|YP_002114380.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197265600|ref|ZP_03165674.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|198241856|ref|YP_002215762.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200389294|ref|ZP_03215905.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|207857130|ref|YP_002243781.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224584124|ref|YP_002637922.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|16419883|gb|AAL20288.1| putative permease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|194401994|gb|ACF62216.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194406168|gb|ACF66387.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194710370|gb|ACF89591.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195634155|gb|EDX52507.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197243855|gb|EDY26475.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197936372|gb|ACH73705.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199601739|gb|EDZ00285.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205323653|gb|EDZ11492.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205327740|gb|EDZ14504.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205347570|gb|EDZ34201.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206708933|emb|CAR33263.1| lipoprotein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224468651|gb|ACN46481.1| hypothetical protein SPC_2365 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261246572|emb|CBG24382.1| lipoprotein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267993250|gb|ACY88135.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157899|emb|CBW17394.1| lipoprotein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312912349|dbj|BAJ36323.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321223992|gb|EFX49055.1| Putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322616748|gb|EFY13657.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619992|gb|EFY16865.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622303|gb|EFY19148.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627826|gb|EFY24616.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633075|gb|EFY29818.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636679|gb|EFY33382.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641296|gb|EFY37937.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647390|gb|EFY43882.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650226|gb|EFY46640.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655800|gb|EFY52102.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660126|gb|EFY56365.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665308|gb|EFY61496.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669565|gb|EFY65713.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673491|gb|EFY69593.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677419|gb|EFY73483.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322679918|gb|EFY75957.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687390|gb|EFY83362.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323129634|gb|ADX17064.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323192507|gb|EFZ77737.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198638|gb|EFZ83739.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203119|gb|EFZ88150.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208684|gb|EFZ93622.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323213802|gb|EFZ98580.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217661|gb|EGA02376.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323219072|gb|EGA03577.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323227199|gb|EGA11372.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229463|gb|EGA13586.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323232686|gb|EGA16782.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240276|gb|EGA24320.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242736|gb|EGA26757.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323245947|gb|EGA29935.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252809|gb|EGA36646.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256701|gb|EGA40430.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323267143|gb|EGA50628.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271533|gb|EGA54954.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326623509|gb|EGE29854.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 372

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 79/152 (51%), Gaps = 6/152 (3%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
           + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  ++  G  P+   A+ I
Sbjct: 209 QAIRAVALGVVVTALVQAVLGGVGLAISGVPYATLLTVVMILSCLVQLGPLPVLIPAI-I 267

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +L   G+    T L +W A+ +  +D  +RP L+     LP L    G++GG+   G++G
Sbjct: 268 WLYWTGDTTWGTVLLVWSAV-VGTLDNVIRPVLIRMGADLPLLLILSGVIGGLIAFGMIG 326

Query: 328 LFIGPVLMALIAVI---WKESIMAIKENKEKI 356
           LFIGPVL+A+   +   W   + A     E+I
Sbjct: 327 LFIGPVLLAVTWRLFSAWVHEVPAPTNEPEEI 358


>gi|62179954|ref|YP_216371.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62127587|gb|AAX65290.1| putative permease [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322714421|gb|EFZ05992.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 372

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 79/152 (51%), Gaps = 6/152 (3%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
           + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  ++  G  P+   A+ I
Sbjct: 209 QAIRAVALGVVVTALVQAVLGGVGLAISGVPYATLLTVVMILSCLVQLGPLPVLIPAI-I 267

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +L   G+    T L +W A+ +  +D  +RP L+     LP L    G++GG+   G++G
Sbjct: 268 WLYWTGDTTWGTVLLVWSAV-VGTLDNVIRPVLIRMGADLPLLLILSGVIGGLIAFGMIG 326

Query: 328 LFIGPVLMALIAVI---WKESIMAIKENKEKI 356
           LFIGPVL+A+   +   W   + A     E+I
Sbjct: 327 LFIGPVLLAVTWRLFSAWVHEVPAPTNEPEEI 358


>gi|312966841|ref|ZP_07781059.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|312288305|gb|EFR16207.1| conserved hypothetical protein [Escherichia coli 2362-75]
          Length = 370

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 147/324 (45%), Gaps = 15/324 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +FI+P+
Sbjct: 23  MIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMVFIIPI 82

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT--KHLSHPQSLKIL 136
             L    +++    + K + +    +P   WL  IP  +  ++L+    +L       I+
Sbjct: 83  -ALLVNSIVDGSGPLIKAISSGDMTLPDLAWLKTIP--VIGTKLYAGWHNLLDMGGTAIM 139

Query: 137 SET--FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           ++   ++ T    F+ + A+  G  F+ +C     M++     Y  G  ++Q +      
Sbjct: 140 AKVRPYIGTTTTWFVGQ-AAHIGR-FMVHC---ALMLLFSALLYWRGEQVAQGIRHFATR 194

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  ++
Sbjct: 195 LAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSCLV 254

Query: 255 P-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
             G  P+   A+ I+L   G+    T L +W  + +  +D  +RP L+     LP +   
Sbjct: 255 QLGPLPVLIPAI-IWLYWTGDTTWGTVLLVWSGV-VGTLDNVIRPMLIRMGADLPLILIL 312

Query: 314 FGLVGGVRTMGLLGLFIGPVLMAL 337
            G++GG+   G++GLFIGPVL+A+
Sbjct: 313 SGVIGGLIAFGMIGLFIGPVLLAV 336


>gi|204927467|ref|ZP_03218668.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204322809|gb|EDZ08005.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 372

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 74/136 (54%), Gaps = 6/136 (4%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
           + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  ++  G  P+   A+ I
Sbjct: 209 QAIRAVALGVVVTALVQAVLGGVGLAISGVPYATLLTVVMILSCLVQLGPLPVLIPAI-I 267

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +L   G+    T L +W A+ +  +D  +RP L+     LP L    G++GG+   G++G
Sbjct: 268 WLYWTGDTTWGTVLLVWSAV-VGTLDNVIRPVLIRMGADLPLLLILSGVIGGLIAFGMIG 326

Query: 328 LFIGPVLMALIAVIWK 343
           LFIGPVL+   AV W+
Sbjct: 327 LFIGPVLL---AVTWR 339


>gi|94986915|ref|YP_594848.1| permease [Lawsonia intracellularis PHE/MN1-00]
 gi|94731164|emb|CAJ54526.1| predicted permease [Lawsonia intracellularis PHE/MN1-00]
          Length = 346

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 74/153 (48%), Gaps = 1/153 (0%)

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAV 265
           +   I    +G+ +++I +G + G  + +A VP     G+ITA +A IP  G  + +  V
Sbjct: 194 IRNAIFGVLVGIVLVSIIQGFLCGIGFAVANVPQPAFWGLITAFVAPIPFVGTSLVWIPV 253

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            I+L ++G       + +W  I +  VD  LRPF +   I    +     ++ G+   G 
Sbjct: 254 CIWLWLQGETVAMVAMIIWCVIVVAGVDNLLRPFFLKTGIDATLIALILSILCGLAAFGP 313

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +G+  GP+L+A+     KES+ A++      + 
Sbjct: 314 VGIVAGPILVAIAIQASKESLQALQITDRSCNK 346


>gi|293410002|ref|ZP_06653578.1| inner membrane protein [Escherichia coli B354]
 gi|291470470|gb|EFF12954.1| inner membrane protein [Escherichia coli B354]
          Length = 370

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 147/324 (45%), Gaps = 15/324 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +FI+P+
Sbjct: 23  MIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMVFIIPI 82

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT--KHLSHPQSLKIL 136
             L    +++    + K + +    +P   WL+ IP  +  ++L+    +L       I+
Sbjct: 83  -ALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIP--VIGAKLYAGWHNLLDMGGTAIM 139

Query: 137 SET--FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           ++   ++ T    F+ + A+  G  F+ +C     M++     Y  G  + Q +      
Sbjct: 140 AKVRPYIGTTTTWFVGQ-AAHIGR-FMVHC---ALMLLFSALLYWRGEQVGQGIRHFATR 194

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  ++
Sbjct: 195 LAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSCLV 254

Query: 255 P-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
             G  P+   A+ I+L   G+    T L +W  + +  +D  +RP L+     LP +   
Sbjct: 255 QLGPLPVLIPAI-IWLYWTGDTTWGTVLLVWSGV-VGTLDNVIRPMLIRMGADLPLILIL 312

Query: 314 FGLVGGVRTMGLLGLFIGPVLMAL 337
            G++GG+   G++GLFIGPVL+A+
Sbjct: 313 SGVIGGLIAFGMIGLFIGPVLLAV 336


>gi|215486863|ref|YP_002329294.1| putative inner membrane protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215264935|emb|CAS09321.1| predicted inner membrane protein [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 370

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 147/324 (45%), Gaps = 15/324 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +FI+P+
Sbjct: 23  MIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMVFIIPI 82

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT--KHLSHPQSLKIL 136
             L    +++    + K + +    +P   WL  IP  +  ++L+    +L       I+
Sbjct: 83  -ALLVNSIVDGSGPLIKAISSGDMTLPDLAWLKTIP--VIGTKLYAGWHNLLDMGGTAIM 139

Query: 137 SET--FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           ++   ++ T    F+ + A+  G  F+ +C     M++     Y  G  ++Q +      
Sbjct: 140 AKVRPYIGTTTTWFVGQ-AAHIGR-FMVHC---ALMLLFSALLYWRGEQVAQGIRHFATR 194

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  ++
Sbjct: 195 LAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSCLV 254

Query: 255 P-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
             G  P+   A+ I+L   G+    T L +W  + +  +D  +RP L+     LP +   
Sbjct: 255 QLGPLPVLIPAI-IWLYWTGDTTWGTVLLVWSGV-VGTLDNVIRPMLIRMGADLPLILIL 312

Query: 314 FGLVGGVRTMGLLGLFIGPVLMAL 337
            G++GG+   G++GLFIGPVL+A+
Sbjct: 313 SGVIGGLIAFGMIGLFIGPVLLAV 336


>gi|271500197|ref|YP_003333222.1| hypothetical protein Dd586_1651 [Dickeya dadantii Ech586]
 gi|270343752|gb|ACZ76517.1| protein of unknown function UPF0118 [Dickeya dadantii Ech586]
          Length = 366

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 121/298 (40%), Gaps = 10/298 (3%)

Query: 43  TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH 102
            +WP+            +   ++ T+ ++ LF+ P   L    +     L++ V    + 
Sbjct: 48  ATWPLLIRLQQILWGYRSLAVIVMTILLVLLFVFPTSILVSSVIDNASNLINWVSAQGRM 107

Query: 103 GIPVPRWLSDIP---GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI 159
             P   WL  IP     + +S     H   P  +  +     +T    ++   A+  G  
Sbjct: 108 TPPSLDWLQSIPLVGAKLHSSWHALAHSGGPALMAKIQPYIGQTA--SWVVSQAAHVGRF 165

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
            +   L ++F ++     Y  G  ++  +      L          +  + IR+  LG+ 
Sbjct: 166 LMHCALMVLFSVL----LYSKGDQVALGVRRFAIRLGGQGGDSAVILAAQAIRAVALGVV 221

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNAT 279
           + AI + ++ G    LAG+P    L V+  +  +   G         I+L   G+    T
Sbjct: 222 VTAIVQSVLGGIGLALAGIPYTTLLTVLMFLSCVAQIGPLTVLVPAIIWLYWSGDTTWGT 281

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
            L +W  + +  +D  +RP L+     LP L    G++GG+   G++GLFIGPV++A+
Sbjct: 282 VLLVWSCV-VGTLDNIIRPLLIRMGADLPMLLILSGVIGGLLAFGMIGLFIGPVVLAV 338


>gi|156934268|ref|YP_001438184.1| putative inner membrane protein [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156532522|gb|ABU77348.1| hypothetical protein ESA_02098 [Cronobacter sakazakii ATCC BAA-894]
          Length = 375

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 158/342 (46%), Gaps = 14/342 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVS-LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           +R+ M  PQ ++  + + +++++ L+ ++ F      A  +   +WP+    + K     
Sbjct: 7   LRQPMDVPQILLSVLFLSVMIIACLWIVQPFILGFAWAGTVVIATWPLLLR-LQKMLWGR 65

Query: 60  TFLAVIATVSVMC-LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
             LAV+  V ++  LF++P+  L    +++        + + +  IP   WL+ IP    
Sbjct: 66  RSLAVLVMVLILIMLFVIPVALLVN-SLVDSSGPFIHWLTSGKMTIPDLAWLNSIPYIGN 124

Query: 119 ASELWTKHLSHPQSLKILSET--FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
              L   +L       I+++   +L T    FI + A+  G + +   L ++F  +    
Sbjct: 125 KLYLGWHNLVESGGSAIMAKVRPYLGTTTGWFIGQ-AAHLGRLLMHCGLMLLFSAL---- 179

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
            Y  G  ++  +      L          +  + IR+  LG+ + A+ +G++ G    ++
Sbjct: 180 LYWRGEQVAYGIRHFAIRLASKRGDAAVLLAGQAIRAVALGVVVTALVQGVLGGIGLAIS 239

Query: 237 GVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
           G+P    L V+  +  ++  G  P+   A+ I+L   G+    T L +W A+ +  +D  
Sbjct: 240 GIPYATLLTVVMILSCLVQLGPLPVLVPAI-IWLYWSGDATWGTVLLIWSAV-VGTLDNI 297

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           +RP L+     LP +    G++GG+   G++GLFIGPVL+A+
Sbjct: 298 IRPMLIRMGADLPMVLILSGVIGGLIAFGMIGLFIGPVLLAV 339


>gi|78186116|ref|YP_374159.1| hypothetical protein Plut_0228 [Chlorobium luteolum DSM 273]
 gi|78166018|gb|ABB23116.1| conserved hypothetical protein [Chlorobium luteolum DSM 273]
          Length = 356

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 97/198 (48%), Gaps = 10/198 (5%)

Query: 168 IFMII--ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK---VIRSTFLGMTIIA 222
           +FMI    +FFF RDG  + +++     +  P       R++ K   V R+T  G  I+ 
Sbjct: 160 LFMIFLYTMFFFLRDGKPLLERV----LYYLPMSDADQQRLLDKFLSVTRATIKGTMIVG 215

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCL 281
           + +G + G A  L G+ S +  G I  +++++P  G PI +    I L   G    A  +
Sbjct: 216 VVQGGLAGMALHLGGIESALFWGTIMTVLSVVPVLGPPIIWVPAVISLAASGRFPQAIGV 275

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L+ AI +  +D  LRP LVG   +L  L  FFG +GG+   GL G  IGP++ AL   +
Sbjct: 276 ALFCAIVVGQIDNILRPILVGRDTRLHELFIFFGTLGGIGLFGLFGFIIGPIIAALFMTV 335

Query: 342 WKESIMAIKENKEKISSN 359
           W+    A  ++   I + 
Sbjct: 336 WEMYGEAFSDSLRDIKTR 353


>gi|170680839|ref|YP_001743566.1| putative inner membrane protein [Escherichia coli SMS-3-5]
 gi|170518557|gb|ACB16735.1| inner membrane protein YdiK [Escherichia coli SMS-3-5]
          Length = 370

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 148/324 (45%), Gaps = 15/324 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +FI+P+
Sbjct: 23  MIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKFMFGRRSLAVLVMTLLLVMVFIIPI 82

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT--KHLSHPQSLKIL 136
             L    +++    + K + +    +P   WL+ IP  +  ++L+    +L       I+
Sbjct: 83  -ALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIP--VIGAKLYAGWHNLLDMGGTAIM 139

Query: 137 SET--FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           ++   ++ T    F+ + A+  G  F+ +C     M++     Y  G  ++Q +      
Sbjct: 140 AKVRPYIGTTTTWFVGQ-AAHIGR-FMVHC---ALMLLFSALLYWRGEQVAQGIRHFATR 194

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  ++
Sbjct: 195 LAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSCLV 254

Query: 255 P-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
             G  P+   A+ I+L   G+    T L +W  + +  +D  +RP L+     LP +   
Sbjct: 255 QLGPLPVLIPAI-IWLYWTGDTTWGTVLLVWSGV-VGTLDNVIRPMLIRMGADLPLILIL 312

Query: 314 FGLVGGVRTMGLLGLFIGPVLMAL 337
            G++GG+   G++GLFIGPVL+A+
Sbjct: 313 SGVIGGLIAFGMIGLFIGPVLLAV 336


>gi|323978175|gb|EGB73261.1| ydiK protein [Escherichia coli TW10509]
          Length = 370

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 148/324 (45%), Gaps = 15/324 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +FI+P+
Sbjct: 23  MIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMVFIIPI 82

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT--KHLSHPQSLKIL 136
             L    +++    + K + +    +P   WL+ IP  +  ++L+    +L       I+
Sbjct: 83  -ALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIP--VIGAKLYAGWHNLLDMGGTAIM 139

Query: 137 SE--TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           ++   ++ T    F+ + A+  G  F+ +C     M++     Y  G  ++Q +      
Sbjct: 140 AKLRPYIGTTTTWFVGQ-AAHIGR-FMVHC---ALMLLFSALLYWRGEQVAQGIRHFATR 194

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  ++
Sbjct: 195 LAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSCLV 254

Query: 255 P-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
             G  P+   A+ I+L   G+    T L +W  + +  +D  +RP L+     LP +   
Sbjct: 255 QLGPLPVLIPAI-IWLYWTGDTTWGTVLLVWSGV-VGTLDNVIRPMLIRMGADLPLILIL 312

Query: 314 FGLVGGVRTMGLLGLFIGPVLMAL 337
            G++GG+   G++GLFIGPVL+A+
Sbjct: 313 SGVIGGLIAFGMIGLFIGPVLLAV 336


>gi|323260092|gb|EGA43717.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
          Length = 337

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 93/201 (46%), Gaps = 9/201 (4%)

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
           F+ +C     M++     Y  G  ++  +      L          +  + IR+  LG+ 
Sbjct: 128 FMMHC---ALMLLFSALLYWRGEQVAMGIRHFACRLAAKRGDAAVLLAAQAIRAVALGVV 184

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNA 278
           + A+ + ++ G    ++GVP    L V+  +  ++  G  P+   A+ I+L   G+    
Sbjct: 185 VTALVQAVLGGVGLAISGVPYATLLTVVMILSCLVQLGPLPVLIPAI-IWLYWTGDTTWG 243

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           T L +W A+ +  +D  +RP L+     LP L    G++GG+   G++GLFIGPVL+A+ 
Sbjct: 244 TVLLVWSAV-VGTLDNVIRPVLIRMGADLPLLLILSGVIGGLIAFGMIGLFIGPVLLAVT 302

Query: 339 AVI---WKESIMAIKENKEKI 356
             +   W   + A     E+I
Sbjct: 303 WRLFSAWVHEVPAPTNEPEEI 323


>gi|168822229|ref|ZP_02834229.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|197247934|ref|YP_002146674.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197211637|gb|ACH49034.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|205341339|gb|EDZ28103.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320086155|emb|CBY95929.1| UPF0118 membrane protein BU123 [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 372

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 79/152 (51%), Gaps = 6/152 (3%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
           + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  ++  G  P+   A+ I
Sbjct: 209 QAIRAVALGVVVTALVQAVLGGIGLAISGVPYATLLTVVMILSCLVQLGPLPVLIPAI-I 267

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +L   G+    T L +W A+ +  +D  +RP L+     LP L    G++GG+   G++G
Sbjct: 268 WLYWTGDTTWGTVLLVWSAV-VGTLDNVIRPVLIRMGADLPLLLILSGVIGGLIAFGMIG 326

Query: 328 LFIGPVLMALIAVI---WKESIMAIKENKEKI 356
           LFIGPVL+A+   +   W   + A     E+I
Sbjct: 327 LFIGPVLLAVTWRLFSAWVHEVPAPTNEPEEI 358


>gi|255035092|ref|YP_003085713.1| hypothetical protein Dfer_1300 [Dyadobacter fermentans DSM 18053]
 gi|254947848|gb|ACT92548.1| protein of unknown function UPF0118 [Dyadobacter fermentans DSM
           18053]
          Length = 345

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 141/342 (41%), Gaps = 41/342 (11%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP------LLFLFY 83
           FF   L AL +       Y     K++ + +  A++  V  M   + P      ++F   
Sbjct: 32  FFPGFLGALTLYILCRRYYFHLTEKRKWNKSLTAILFMVLFMACIVAPVYLALQMVFQKV 91

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
            G+++  E V++ + A      + R L +  G     +L TK  +     K         
Sbjct: 92  TGIMDNPEQVNQAIAA------ISRQLREWTG----QDLLTKEATADMGKK--------- 132

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
               FIP   +   M+ L   L I+F+    +F +++G S+ + +D       P   K I
Sbjct: 133 -AAGFIPAILNSSAMM-LGNLLMILFLA---YFMFKNGRSMERTIDDF----IPLKHKNI 183

Query: 204 SRIVPK---VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
             +  +   ++R+  LG+ +I++ +GLV    YW+ G+   V LG+IT   A  P  G  
Sbjct: 184 DLLADETCGMVRANALGIPLISLIQGLVALLGYWVVGIEDFVLLGLITGFCAFFPVIGTA 243

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +  + I+L  KG    A  L  +    +  +D   R   +     +  + T  GL+ G
Sbjct: 244 LIWLPLVIFLFSKGESGKAIGLAAYSVTVIGNIDYVARITFLQKVGNVHPVITILGLIAG 303

Query: 320 VRTMGLLGLFIGPVLMA---LIAVIWKESIMAIKENKEKISS 358
           ++  G  G   GP+L++   L+  I+K      +    K + 
Sbjct: 304 LKLFGFWGFIFGPLLISYLMLLVRIYKNEFSGSRSEPVKTTE 345


>gi|161614223|ref|YP_001588188.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161363587|gb|ABX67355.1| hypothetical protein SPAB_01967 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 360

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 93/201 (46%), Gaps = 9/201 (4%)

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
           F+ +C     M++     Y  G  ++  +      L          +  + IR+  LG+ 
Sbjct: 151 FMMHC---ALMLLFSALLYWRGEQVAMGIRHFACRLAAKRGDAAVLLAAQAIRAVALGVV 207

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNA 278
           + A+ + ++ G    ++GVP    L V+  +  ++  G  P+   A+ I+L   G+    
Sbjct: 208 VTALVQAVLGGVGLAISGVPYATLLTVVMILSCLVQLGPLPVLIPAI-IWLYWTGDTTWG 266

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           T L +W A+ +  +D  +RP L+     LP L    G++GG+   G++GLFIGPVL+A+ 
Sbjct: 267 TVLLVWSAV-VGTLDNVIRPVLIRMGADLPLLLILSGVIGGLIAFGMIGLFIGPVLLAVT 325

Query: 339 AVI---WKESIMAIKENKEKI 356
             +   W   + A     E+I
Sbjct: 326 WRLFSAWVHEVPAPTNEPEEI 346


>gi|254368119|ref|ZP_04984139.1| hypothetical protein FTHG_01453 [Francisella tularensis subsp.
           holarctica 257]
 gi|254369723|ref|ZP_04985733.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|134253929|gb|EBA53023.1| hypothetical protein FTHG_01453 [Francisella tularensis subsp.
           holarctica 257]
 gi|157122682|gb|EDO66811.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 346

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 137/303 (45%), Gaps = 23/303 (7%)

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
              S+F+ VIA +  +C+FI PLL +  Y + E+   +      +Q    + + +++IP 
Sbjct: 59  RHKSSFIIVIAIL--LCIFI-PLLIVLSYVITEIISYLQHSESLSQTFSQLSKSIANIP- 114

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
             +      +H  +  ++    +  + +N    +P      G   +      +  ++ ++
Sbjct: 115 --YIGSTLQEHFDNLLNMVNQDKDMIISNLGKILPTI-RYIGFTSVSLLTDFLITLLLVY 171

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
            F     S+ + L  +    F      IS  +    R   L + + A+  G ++   + +
Sbjct: 172 QFLVSSTSLEKFLKKIILKDFHDSDSFISAAIATT-RRVSLAIFLTAMLVGTMMTITFSM 230

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIF------NATCLFLWG-AIE 288
            G+PS +  G I AI +M+P      F    IY+LI  ++F       A  + + G ++ 
Sbjct: 231 VGIPSPILFGFIAAIASMVP------FMVGIIYILIGASVFVIYGVTKAIIILIIGFSLN 284

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           +F  D  ++P ++   +KL F+ +  G++GG+   G +G+F+GPV+   +A +  E +M 
Sbjct: 285 IF-TDNIMQPKIINKQVKLSFVASLIGIMGGIHAFGFIGIFLGPVIFN-VAFVGIEKLMN 342

Query: 349 IKE 351
            +E
Sbjct: 343 NQE 345


>gi|172038736|ref|YP_001805237.1| hypothetical protein cce_3823 [Cyanothece sp. ATCC 51142]
 gi|171700190|gb|ACB53171.1| hypothetical protein cce_3823 [Cyanothece sp. ATCC 51142]
          Length = 374

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 124/265 (46%), Gaps = 21/265 (7%)

Query: 105 PVPRWLSDIPG-GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY 163
           P P  + + P  G +   +WT   ++  S+    +  L+T   + +  FA   G++ L +
Sbjct: 119 PPPEGVENWPIIGNYVDRMWTSASNNLISVLSKFQPQLETIAKNLL-FFAGNMGLVLLKF 177

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF----PAYWKKISRIVPKVIRSTFLGMT 219
            LSII   I            S+QL+   + +F    P   ++  ++    IR    G+ 
Sbjct: 178 ILSIIVAGILTIN--------SKQLNRRIKRIFIRVTPQQGEEFLQLATATIRGVTRGII 229

Query: 220 IIAIGEGLVLGSAYWLAGVP-SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA 278
            +++ + L++G  + +AG+P S +   +   +  +  G  P+ F ++ I+         A
Sbjct: 230 GVSLIQSLLVGIGFTVAGIPLSGLLTVLCLVLCILQIGLGPVVFPSI-IFAWYTMGTLKA 288

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL- 337
             L +W  I   ++D  LRP  +   + +P L  F G+ GG    G+LGLFIGPV+++L 
Sbjct: 289 LLLSIW-LIFCTLIDNILRPIFMSQGVSVPILVIFIGVFGGSLLHGILGLFIGPVVLSLG 347

Query: 338 --IAVIW-KESIMAIKENKEKISSN 359
             +A+ W K+ +  I  N +  +S+
Sbjct: 348 YELALAWVKQDVKPILNNGKPNNSD 372


>gi|89256840|ref|YP_514202.1| hypothetical protein FTL_1556 [Francisella tularensis subsp.
           holarctica LVS]
 gi|167009266|ref|ZP_02274197.1| hypothetical protein Ftulh_00695 [Francisella tularensis subsp.
           holarctica FSC200]
 gi|89144671|emb|CAJ79995.1| conserved hypothetical membrane protein [Francisella tularensis
           subsp. holarctica LVS]
          Length = 341

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 137/303 (45%), Gaps = 23/303 (7%)

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
              S+F+ VIA +  +C+FI PLL +  Y + E+   +      +Q    + + +++IP 
Sbjct: 54  RHKSSFIIVIAIL--LCIFI-PLLIVLSYVITEIISYLQHSESLSQTFSQLSKSIANIP- 109

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
             +      +H  +  ++    +  + +N    +P      G   +      +  ++ ++
Sbjct: 110 --YIGSTLQEHFDNLLNMVNQDKDMIISNLGKILPTI-RYIGFTSVSLLTDFLITLLLVY 166

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
            F     S+ + L  +    F      IS  +    R   L + + A+  G ++   + +
Sbjct: 167 QFLVSSTSLEKFLKKIILKDFHDSDSFISAAIATT-RRVSLAIFLTAMLVGTMMTITFSM 225

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIF------NATCLFLWG-AIE 288
            G+PS +  G I AI +M+P      F    IY+LI  ++F       A  + + G ++ 
Sbjct: 226 VGIPSPILFGFIAAIASMVP------FMVGIIYILIGASVFVIYGVTKAIIILIIGFSLN 279

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           +F  D  ++P ++   +KL F+ +  G++GG+   G +G+F+GPV+   +A +  E +M 
Sbjct: 280 IF-TDNIMQPKIINKQVKLSFVASLIGIMGGIHAFGFIGIFLGPVIFN-VAFVGIEKLMN 337

Query: 349 IKE 351
            +E
Sbjct: 338 NQE 340


>gi|323187112|gb|EFZ72428.1| hypothetical protein ECRN5871_4699 [Escherichia coli RN587/1]
          Length = 370

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 147/324 (45%), Gaps = 15/324 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +FI+P+
Sbjct: 23  MIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMVFIIPI 82

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT--KHLSHPQSLKIL 136
             L    +++    + K + +    +P   WL+ IP  +  ++L+    +L       I+
Sbjct: 83  -ALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIP--VIGAKLYAGWHNLLDMGGTAIM 139

Query: 137 SET--FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           ++   ++ T    F+ + A+  G  F+ +C     M++     Y  G  + Q +      
Sbjct: 140 AKVRPYIGTTTTWFVGQ-AAHIGR-FMVHC---ALMLLFSALLYWRGEQVVQGIRHFATR 194

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  ++
Sbjct: 195 LAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSCLV 254

Query: 255 P-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
             G  P+   A+ I+L   G+    T L +W  + +  +D  +RP L+     LP +   
Sbjct: 255 QLGPLPVLIPAI-IWLYWTGDTTWGTVLLVWSGV-VGTLDNVIRPMLIRMGADLPLILIL 312

Query: 314 FGLVGGVRTMGLLGLFIGPVLMAL 337
            G++GG+   G++GLFIGPVL+A+
Sbjct: 313 SGVIGGLIAFGMIGLFIGPVLLAV 336


>gi|113971076|ref|YP_734869.1| hypothetical protein Shewmr4_2741 [Shewanella sp. MR-4]
 gi|113885760|gb|ABI39812.1| protein of unknown function UPF0118 [Shewanella sp. MR-4]
          Length = 369

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 149/349 (42%), Gaps = 38/349 (10%)

Query: 11  IMRWMIMFIILVSLYFLKGF----FAPVLS----ALIIGFTSWPIYSSFISKKEESSTFL 62
           + +++ MFI    L  L  F    F+P L+    A+I+    +P +     +  +     
Sbjct: 14  VTKFLDMFIKFGMLLALASFCYTIFSPFLNIMLWAVILAVVIYPFHQRIAKRLNDKQGRA 73

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP---RWLSDIP-GGMW 118
           A +  V  + + ++P + +       M  LV +V   NQ+ + VP     +++IP  G  
Sbjct: 74  ATLLIVVGLMVLVLPTITMVSSMTDNMGSLVERV---NQNTLEVPAPKESIANIPFVGAK 130

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             ++W K  +   SL    +  L       I   AS  G + +       F+I  +   Y
Sbjct: 131 IYDVWQKASTDLPSLVKSLQPHLGEVTKQVIHALASISGSLLMSM---FSFIIAGIMMAY 187

Query: 179 -RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            R G   S ++ +      P    K+  I    IR+  LG+  +A  + L++G    LAG
Sbjct: 188 GRAGAQSSARIAT--RIAGPERGAKLINICSTTIRAVALGVIGVAFIQALLVGIVMTLAG 245

Query: 238 VPSH-------VALGV--ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
           +P         + LG+  + A++  +P  A I  T  +  +   G+I     L L GA  
Sbjct: 246 IPLVGIFFILVLVLGIAQVPALLVTLPAIAYIWMTGDNGTV---GSIIYTVLLILAGA-- 300

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
              VD  L+P L+G  +  P      G +GG+ T G+LG+FIG  L+++
Sbjct: 301 ---VDNVLKPILLGRGVDAPMPVVLIGALGGMATSGILGMFIGATLLSI 346


>gi|311233404|gb|ADP86258.1| protein of unknown function UPF0118 [Desulfovibrio vulgaris RCH1]
          Length = 389

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 86/167 (51%), Gaps = 9/167 (5%)

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIV---PKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           +DG  + Q++     +L P    +  RI+    +V RS  +G  ++A+ +GL+ G A   
Sbjct: 190 KDGAWMVQRV----RYLSPLRIDQQDRIILELRRVGRSVLVGGLLVAVIQGLLGGVALAA 245

Query: 236 AGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
            G+P+ +  G + A  +++P  G  + +     YLL+     +A  L LW  I +   D 
Sbjct: 246 VGIPA-LFWGTLMAFASLVPVVGTGLVWVPAVCYLLLTSQWESALFLSLWCGIVVVGADS 304

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            LRP+ + G + +P    F  ++GGV+  G+LG+  GP++++   V+
Sbjct: 305 ILRPYFMRGGVGMPVFFIFLSILGGVKAFGMLGILDGPLILSFTVVM 351


>gi|260868179|ref|YP_003234581.1| putative inner membrane protein [Escherichia coli O111:H- str.
           11128]
 gi|257764535|dbj|BAI36030.1| predicted inner membrane protein [Escherichia coli O111:H- str.
           11128]
 gi|323181004|gb|EFZ66542.1| hypothetical protein ECOK1180_0300 [Escherichia coli 1180]
          Length = 370

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 147/324 (45%), Gaps = 15/324 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +FI+P+
Sbjct: 23  MIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMVFIIPI 82

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT--KHLSHPQSLKIL 136
             L    +++    + K + +    +P   WL+ IP  +  ++L+    +L       I+
Sbjct: 83  -ALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIP--VIGAKLYAGWHNLLDMGGTAIM 139

Query: 137 SET--FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           ++   ++ T    F+ + A+  G  F+ +C     M++     Y  G  + Q +      
Sbjct: 140 AKVRPYIGTTTTWFVGQ-AAHIGR-FMVHC---ALMLLFSALLYWRGEQVVQGIRHFATR 194

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  ++
Sbjct: 195 LAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSCLV 254

Query: 255 P-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
             G  P+   A+ I+L   G+    T L +W  + +  +D  +RP L+     LP +   
Sbjct: 255 QLGPLPVLIPAI-IWLYWTGDTTWGTVLLVWSGV-VGTLDNVIRPMLIRMGADLPLILIL 312

Query: 314 FGLVGGVRTMGLLGLFIGPVLMAL 337
            G++GG+   G++GLFIGPVL+A+
Sbjct: 313 SGVIGGLIAFGMIGLFIGPVLLAV 336


>gi|257092178|ref|YP_003165819.1| hypothetical protein CAP2UW1_0541 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044702|gb|ACV33890.1| protein of unknown function UPF0118 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 372

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 104/241 (43%), Gaps = 6/241 (2%)

Query: 98  LANQHGIPVPRWLSDIPGGMWA-SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
           L++ H    P W++D+P   W   ++W +  +   +           N   +       F
Sbjct: 103 LSSLHVQSPPAWVADVPFVGWRLEQIWQQTATTGGTELAAKVAPYAANLTRWFVSEIGSF 162

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
           G++F+ + L++    +     Y  G   +  +   G  L     +    +  +  R+  L
Sbjct: 163 GLVFVQFLLTVALCAV----LYASGEKAAAGVRRFGYRLSGERGEGAVILAGQAARAVAL 218

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIF 276
           G+ + A+ + ++ G    +AGVP    L  +  +  +   G  +      ++L    +  
Sbjct: 219 GVGVTALVQSILGGIGLAIAGVPFAPVLTAVMFMFCIAQLGPGLVLVPAVVWLYWGDHTG 278

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
             T L +W AI +  +D  LRP L+     LP L    G++GG+   GL+GLF+GPV++A
Sbjct: 279 WGTFLLIW-AIFVGTMDNFLRPVLIKQGADLPLLLILAGVIGGMLAFGLVGLFVGPVILA 337

Query: 337 L 337
           +
Sbjct: 338 V 338


>gi|24215055|ref|NP_712536.1| permease [Leptospira interrogans serovar Lai str. 56601]
 gi|45657464|ref|YP_001550.1| putative permease protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24196107|gb|AAN49554.1| permease [Leptospira interrogans serovar Lai str. 56601]
 gi|45600703|gb|AAS70187.1| conserved putative permease protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 376

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 19/176 (10%)

Query: 178 YRDGFSISQ-QLDSL--GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           Y+DG  + +  LD+L   + L     +K++  V  VIR    G  II+I +G  +    W
Sbjct: 194 YQDGKKVERFILDNLPFSKQLEEQVGRKLTAAVQTVIR----GNLIISILQGTAIYILLW 249

Query: 235 LAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGN------IFNATCLFLWGAI 287
           +AG+ S      + A  ++IP  G    +  + +Y+L   N       F  + LF +  +
Sbjct: 250 IAGISSPFLYASLAAFFSIIPVVGTSAVWLPIGLYILFLENNPMMAIFFMGSGLFFYVVL 309

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           E F+  + L   L   P     L  F  L+GG++  G++GL +GPV + L+ ++W 
Sbjct: 310 ENFVKPRMLDKKLQAHP-----LLIFLSLIGGIKEFGIMGLVVGPVTVTLVVILWD 360


>gi|301059634|ref|ZP_07200543.1| conserved hypothetical protein [delta proteobacterium NaphS2]
 gi|300446280|gb|EFK10136.1| conserved hypothetical protein [delta proteobacterium NaphS2]
          Length = 353

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 103/212 (48%), Gaps = 9/212 (4%)

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
           P++++ L  +  K  G+ F+    S      L++ +    M + +++ ++DG     +L 
Sbjct: 130 PETIENLGSSIGKNIGL-FLYNQISSVASNLLNFLIQFFLMALTMYYLFKDG----ARLK 184

Query: 190 SLGEHLFPAYWKKISRIVPK---VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
                L P    ++ ++  K   + R+  +G  +  I +G++ G  ++  G+ S    G 
Sbjct: 185 RYFFELLPVPESQLEKLTDKFHEMGRAIVVGNGLSGIVQGILGGLGFYFFGLSSPFLWGT 244

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           + + MA +P  GA   F   ++ L + GN   A    ++      +++  ++P L+G  +
Sbjct: 245 VISFMAFLPVIGASAVFIPTTVILFLHGNSGLALGFLIYNLSYSSVIEYLIKPRLIGQGM 304

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           ++  L  F G++GG++  G+LG+  GP+++ +
Sbjct: 305 QMNALLVFVGIIGGIKVFGILGIVYGPLIITV 336


>gi|270261590|ref|ZP_06189863.1| putative inner membrane protein [Serratia odorifera 4Rx13]
 gi|270045074|gb|EFA18165.1| putative inner membrane protein [Serratia odorifera 4Rx13]
          Length = 366

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 5/185 (2%)

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
           A+  G   L   L ++F ++     Y  G  ++  +      L          +  + IR
Sbjct: 158 AAHIGRFLLHCTLMLLFSVL----LYARGEQVALGIRHFAARLAAERGDAAVVLGGQAIR 213

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
           +  LG+ + A+ + ++ G    ++G+P+   L V+  I  +   G  +      I+L   
Sbjct: 214 AVALGVVVTALVQSVLGGIGLAVSGIPAATLLTVLIFICCVAQLGPLLVLVPAIIWLYWS 273

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
           G+    T L +W  + +  +D  LRP L+     LP L    G++GG+   G++GLFIGP
Sbjct: 274 GDTTWGTVLLVWSCV-VATLDNVLRPVLIRMGADLPMLLILSGVIGGLLAFGMIGLFIGP 332

Query: 333 VLMAL 337
           V++A+
Sbjct: 333 VVLAV 337


>gi|56413662|ref|YP_150737.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197362586|ref|YP_002142223.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56127919|gb|AAV77425.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197094063|emb|CAR59563.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 372

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 88/185 (47%), Gaps = 9/185 (4%)

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
           F+ +C     M++     Y  G  ++  +      L          +  + IR+  LG+ 
Sbjct: 163 FMMHC---ALMLLFSALLYWRGEQVAMGIRHFACRLAAKRGDAAVLLAAQAIRAVALGVV 219

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNA 278
           + A+ + ++ G    ++GVP    L V+  +  ++  G  P+   A+ I+L   G+    
Sbjct: 220 VTALVQAVLGGVGLAISGVPYATLLTVVMILSCLVQLGPLPVLIPAI-IWLYWTGDTTWG 278

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           T L +W A+ +  +D  +RP L+     LP L    G++GG+   G++GLFIGPVL+   
Sbjct: 279 TVLLVWSAV-VGTLDNVIRPVLIRMGADLPLLLILSGVIGGLIAFGMIGLFIGPVLL--- 334

Query: 339 AVIWK 343
           AV W+
Sbjct: 335 AVTWR 339


>gi|114048310|ref|YP_738860.1| hypothetical protein Shewmr7_2819 [Shewanella sp. MR-7]
 gi|113889752|gb|ABI43803.1| protein of unknown function UPF0118 [Shewanella sp. MR-7]
          Length = 369

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 149/349 (42%), Gaps = 38/349 (10%)

Query: 11  IMRWMIMFIILVSLYFLKGF----FAPVLS----ALIIGFTSWPIYSSFISKKEESSTFL 62
           + +++ MFI    L  L  F    F+P L+    A+I+    +P + S   +  +     
Sbjct: 14  VTKFLDMFIKFGMLLALASFCYTIFSPFLNIMLWAVILAVVIYPFHQSIAKRLNDKQGRA 73

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP---RWLSDIP-GGMW 118
           A +  +  + + ++P + +       M  LV  V   NQ+ + VP     +++IP  G  
Sbjct: 74  ATLLIIIGLMVLVLPTITMVSSMTDNMGSLVESV---NQNTLEVPAPKESIANIPFVGAK 130

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             ++W K  +   SL    +  L       I   AS  G + +       F+I  +   Y
Sbjct: 131 IYDVWQKASTDLPSLVKSLQPHLGEVTKQVIHALASISGSLLMSM---FSFIIAGIMMAY 187

Query: 179 -RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            R G   S ++ +      P    K+  I    IR+  LG+  +A  + L++G    LAG
Sbjct: 188 GRAGAQSSARIAT--RIAGPERGAKLINICSTTIRAVALGVIGVAFIQALLVGIVMTLAG 245

Query: 238 VPSH-------VALGV--ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
           +P         + LG+  + A++  +P  A I  T  +  +   G+I     L L GA  
Sbjct: 246 IPLVGIFFILVLVLGIAQVPALLVTLPAIAYIWMTGDNGTV---GSIIYTVLLILAGA-- 300

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
              VD  L+P L+G  +  P      G +GG+ T G+LG+FIG  L+++
Sbjct: 301 ---VDNVLKPILLGRGVDAPMPVVLIGALGGMATSGILGMFIGATLLSI 346


>gi|123442436|ref|YP_001006415.1| putative inner membrane protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089397|emb|CAL12245.1| putative membrane protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 367

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 76/350 (21%), Positives = 147/350 (42%), Gaps = 18/350 (5%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           IM +I+ S + ++ F      A ++   +WP+               A+I T+ ++ LF+
Sbjct: 21  IMIMIIASFWVVQPFIMGFAWAGMVVIATWPLLIWLQKILWGKRWLAAIIMTILLILLFV 80

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL---WTKHLSHPQS 132
           +P+  L    +     L+      +   +P   WL  IP  M  ++L   W   ++   +
Sbjct: 81  IPIALLVSSLVENSGPLIQWASSPSNLKMPDVTWLKSIP--MVGNKLYSGWHSLIAGGGN 138

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS----QQL 188
           L I            ++   A+  G   +   L ++F I+  F   + G  I     +  
Sbjct: 139 LLIAKIQPYVGAAATWLVAQAAHIGYFLIHLALMVLFSILLYFHGEQVGLGIRHFAVRAA 198

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D  G+         +  +  K IR+  LG+ + A+ + ++ G    +AG+       V+ 
Sbjct: 199 DKRGD--------AVVVLAAKAIRAVALGVVVTALVQAVLGGIGLAIAGIQYATLFTVLM 250

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I  +   G  +      I+L   G+    T L +W  I +  +D  LRP+L+     +P
Sbjct: 251 FICCVAQLGPLLILIPAVIWLYWTGDSTWGTILLVWSCI-VGTMDNVLRPYLIRMEADMP 309

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            +    G++GG+ + G++GLFIGPV++A+   +    +    E +E I+ 
Sbjct: 310 MILILSGVIGGLLSFGMIGLFIGPVVLAISYRLTSAWVNEAPEPEESITE 359


>gi|312880432|ref|ZP_07740232.1| protein of unknown function UPF0118 [Aminomonas paucivorans DSM
           12260]
 gi|310783723|gb|EFQ24121.1| protein of unknown function UPF0118 [Aminomonas paucivorans DSM
           12260]
          Length = 373

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 98/197 (49%), Gaps = 6/197 (3%)

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHL-FPAYWKK-ISRIVPKVIRSTFLGMTIIAI 223
           S++ + I+ FF  RDG ++   +  +G+ L  P + KK +S    K++++   G+   A 
Sbjct: 175 SLVVITISSFFLVRDGRAM---VAFVGDLLPLPFHEKKALSLRTQKMLQAVVYGIMFTAA 231

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLF 282
            +  + G  +W  G+P  V  G    +  MIP  G P+ +    I LL+ G+      L 
Sbjct: 232 IQATLGGLGWWFVGLPHPVFFGGAMFVTGMIPFVGTPVVWAPGGIVLLMTGHTQEGVLLL 291

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           LWG   +  VD  LRP  +    K   L  F G++GG+   G LGLF+GP+L++L   + 
Sbjct: 292 LWGGGVVSTVDNFLRPLFISEGSKAHVLLVFVGVLGGLAAWGFLGLFLGPMLLSLSLFLL 351

Query: 343 KESIMAIKENKEKISSN 359
           +     ++E + + SS 
Sbjct: 352 ESYRTILREGERRASSG 368


>gi|153952049|ref|YP_001397505.1| hypothetical protein JJD26997_0286 [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939495|gb|ABS44236.1| putative membrane protein [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 347

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 128/293 (43%), Gaps = 36/293 (12%)

Query: 61  FLAVIATVSVMC-LFIVPLLFLFYYGMLEMKELVSK--VVLANQHGIPVPRWLSDIPGGM 117
           FLA I T + M  LF  P    F YGM+E+ + +    + L  Q    V  +   +P   
Sbjct: 56  FLASILTTACMVLLFFAP----FVYGMIELAKALKNFDINLVTQTLDYVKNYQFTLPESF 111

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
              E   K       L  +S+  L          +AS F      + + ++  +I +F+F
Sbjct: 112 NFLEPKIKEFLASIDLNSISKQIL---------SYASNFTKSGAKFLVDMV--LICVFYF 160

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           + + +    +L    + + P   K++  +   V  V+      M I+AI +G + G    
Sbjct: 161 FANLY--GTELVIYLKSIVPIDKKELDDVLSEVGNVMAVVLYSMVIVAIFQGALFGLITM 218

Query: 235 LAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FI 291
             G    + +GVI A+ ++IP  GGA I +  VS+Y     N+ +A  +F++  I + FI
Sbjct: 219 FYGYDG-ILMGVIFAVSSLIPAIGGALI-YVPVSLYEFASNNLNSALVIFIYSVIIISFI 276

Query: 292 VDKTLRPF--------LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            D  ++P         LV  P K+  L  F  ++ G+ T G  G+ +GP ++ 
Sbjct: 277 ADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFGFWGIILGPAILT 329


>gi|46579600|ref|YP_010408.1| hypothetical protein DVU1189 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120602912|ref|YP_967312.1| hypothetical protein Dvul_1868 [Desulfovibrio vulgaris DP4]
 gi|46449015|gb|AAS95667.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120563141|gb|ABM28885.1| protein of unknown function UPF0118 [Desulfovibrio vulgaris DP4]
          Length = 399

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 86/167 (51%), Gaps = 9/167 (5%)

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIV---PKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           +DG  + Q++     +L P    +  RI+    +V RS  +G  ++A+ +GL+ G A   
Sbjct: 200 KDGAWMVQRV----RYLSPLRIDQQDRIILELRRVGRSVLVGGLLVAVIQGLLGGVALAA 255

Query: 236 AGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
            G+P+ +  G + A  +++P  G  + +     YLL+     +A  L LW  I +   D 
Sbjct: 256 VGIPA-LFWGTLMAFASLVPVVGTGLVWVPAVCYLLLTSQWESALFLSLWCGIVVVGADS 314

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            LRP+ + G + +P    F  ++GGV+  G+LG+  GP++++   V+
Sbjct: 315 ILRPYFMRGGVGMPVFFIFLSILGGVKAFGMLGILDGPLILSFTVVM 361


>gi|85717448|ref|ZP_01048397.1| hypothetical protein NB311A_10710 [Nitrobacter sp. Nb-311A]
 gi|85695750|gb|EAQ33659.1| hypothetical protein NB311A_10710 [Nitrobacter sp. Nb-311A]
          Length = 360

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 101/206 (49%), Gaps = 14/206 (6%)

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF---PAYWKKISRIVP 208
           FA   G+  L + LS+        F +  G   SQ +++ G  L+   P   +    +  
Sbjct: 159 FAGNAGVGTLKFLLSVALS----GFLFPHG---SQLMEAGGSFLYRIVPEQSEHFLALAG 211

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
             IR+   G+  IAI + L+ G  + LAG+ S   L +   I++++  GA I    V I+
Sbjct: 212 ATIRAVSQGVIGIAIIQSLLAGIGFELAGLSSAGVLALAVMILSIVQIGAAIVLVPVIIW 271

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           +    +   AT L ++  + + I+D  L+P ++   +  P L  F G++GG    G++GL
Sbjct: 272 IWTDKDFTTATLLTVFLGL-VGILDNVLKPLVMKRGLTTPTLVIFVGVIGGTLAHGIVGL 330

Query: 329 FIGPVLMALIAVIWKESIMAIKENKE 354
           F+GP++++L    W+ ++  ++  + 
Sbjct: 331 FVGPIILSL---AWELTVAWLRSGRS 353


>gi|294139374|ref|YP_003555352.1| hypothetical protein SVI_0603 [Shewanella violacea DSS12]
 gi|293325843|dbj|BAJ00574.1| conserved hypothetical protein [Shewanella violacea DSS12]
          Length = 376

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 161/354 (45%), Gaps = 38/354 (10%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYS----SFISKKEESSTFLAVIATVSV 70
           ++  ++L +   ++ F  PVL   II     P+      +F  ++  ++T +A+I     
Sbjct: 22  LLFMLVLWTFDIIRPFVIPVLWGAIIAVALMPLTQKLEKAFKGRRGLAATAMAIIG---- 77

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP-RWLSDIPG-GMWASELWTKHLS 128
           + L ++P + L    + +      +V+ + +  IP P + ++DIP  G    E+W     
Sbjct: 78  IALLVIPFV-LVSGSIFDGVSHAIEVLQSGEVNIPGPTQKVADIPVIGDKLYEIWA---- 132

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMI--FLDYCLSIIFM-IIALFF---FYRDGF 182
                  L  T L+     F+P   +  G I   +   L+ + M II+L     F  +  
Sbjct: 133 -------LFSTNLEKAVQHFLPEIKTAVGTIASVIGSSLATLMMFIISLAIAAGFMSNAE 185

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH- 241
            IS  + ++   +     ++ + +    IRS  LG+  +A  + +++GSA ++  VP+  
Sbjct: 186 KISGAISTVAVRVVGKNGEQWTTLTAATIRSVLLGVVGVAFIQSMLIGSAMFVFNVPAAG 245

Query: 242 -VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + LGV+   +A +P  A I       Y+    +  +A    +W  +   + D  L+P L
Sbjct: 246 LITLGVLILGIAQLP--ALIVVLPAIFYVFSTQDTTSAIIFTVW-VLLAGVSDSFLKPML 302

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA-IKENK 353
           +G  + +P      G +GG+   G++GLF+G V++A    IW E  MA +K +K
Sbjct: 303 MGRGVDVPMPVILIGAIGGMLAAGIIGLFLGAVILA----IWYELFMAWLKADK 352


>gi|145219109|ref|YP_001129818.1| hypothetical protein Cvib_0294 [Prosthecochloris vibrioformis DSM
           265]
 gi|145205273|gb|ABP36316.1| protein of unknown function UPF0118 [Chlorobium phaeovibrioides DSM
           265]
          Length = 360

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 112/244 (45%), Gaps = 27/244 (11%)

Query: 123 WTKHLSHP-------QSLKILSETFL-KTNGIDFIPRFASRFGMIFLDYCLSIIFMII-- 172
           W + +  P       QSL    E  + + + +  +   AS+ G +  +   S  +  +  
Sbjct: 98  WVRQMIEPAFLDQQLQSLPFYPEMVIYREDIMQRVTEVASKTGTVLFNTLFSFTYSAVNE 157

Query: 173 ---------ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK---VIRSTFLGMTI 220
                     +FFF RDG S+ + +     +  P       R++ K   V R+T  G  I
Sbjct: 158 LFLFFIFLYTVFFFLRDGRSLLETI----LYYLPLSDADQHRLLDKFLSVTRATIKGTMI 213

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
           +   +G + G A  +AG+ S +  G +  +++++P  G P+ +   +I L   G+   A 
Sbjct: 214 VGTVQGTLAGLALHIAGIESALFWGTMMTVLSVVPVLGPPLVWVPAAISLAFVGHYPQAL 273

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
            + L+ +I +  +D  LRP LVG   +L  L  FFG +GG+   GL G  IGP++ AL  
Sbjct: 274 GVLLFCSIVVGQIDNILRPILVGRDTRLHELFIFFGTLGGIGLFGLFGFIIGPIIAALFM 333

Query: 340 VIWK 343
            +W+
Sbjct: 334 TVWE 337


>gi|242239096|ref|YP_002987277.1| inner membrane protein [Dickeya dadantii Ech703]
 gi|242131153|gb|ACS85455.1| protein of unknown function UPF0118 [Dickeya dadantii Ech703]
          Length = 364

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 4/178 (2%)

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
           FL +C     M++     Y  G  ++  +      L     +    +  + IR+  LG+ 
Sbjct: 165 FLMHC---ALMVLFSILLYSKGDQVALGVRRFAMRLGKQGGEAAVILAAQSIRAVALGVV 221

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNAT 279
           + AI + L+ G    L+G+P    L V+  +  +   G  +      I+L   G+    T
Sbjct: 222 VTAIVQSLLGGIGLALSGIPYTTLLTVLMFLSCVAQLGPLMVLVPAIIWLYWTGDTTWGT 281

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
            L +W  I +  +D  +RP L+     LP L    G++GG+   G++GLFIGPV++A+
Sbjct: 282 ILLVWSCI-VGTLDNVIRPLLIRMGADLPMLLILSGVIGGLLAFGMIGLFIGPVVLAV 338


>gi|153808104|ref|ZP_01960772.1| hypothetical protein BACCAC_02390 [Bacteroides caccae ATCC 43185]
 gi|149129007|gb|EDM20223.1| hypothetical protein BACCAC_02390 [Bacteroides caccae ATCC 43185]
          Length = 341

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 96/200 (48%), Gaps = 12/200 (6%)

Query: 141 LKTNGIDFIPRFASRFGMIFLD----YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           L  + + FI     R G I ++      +++  MI  L+F    G    +++++    + 
Sbjct: 119 LGKDTLSFIVSILPRIGQIIMEGASSLAVNLFVMIFVLYFMLIGG----KKMEAYVNDIL 174

Query: 197 P---AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           P   A  +++ R +  ++RS  +G+ ++AI +G V    Y + G P+ + LG +T    +
Sbjct: 175 PFNEANTQEVIREINMIVRSNAIGIPLLAIIQGGVAMIGYLIFGAPNILLLGFLTCFATI 234

Query: 254 IPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP  G  + +  V+ YL I G+ F+A  L  +GAI +   D  +R  L         L T
Sbjct: 235 IPMVGTALVWFPVAAYLAISGDWFHAIGLAAYGAIVVSQSDNLIRFILQKKMADTHPLIT 294

Query: 313 FFGLVGGVRTMGLLGLFIGP 332
            FG+V G+   G +G+  GP
Sbjct: 295 IFGVVIGLPLFGFMGVIFGP 314


>gi|161503539|ref|YP_001570651.1| putative inner membrane protein [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864886|gb|ABX21509.1| hypothetical protein SARI_01616 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 372

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 88/185 (47%), Gaps = 9/185 (4%)

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
           F+ +C     M++     Y  G  ++  +      L          +  + IR+  LG+ 
Sbjct: 163 FMMHC---ALMLLFSALLYWRGEQVAMGIRHFACRLAAKRGDAAVLLAAQAIRAVALGVV 219

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNA 278
           + A+ + ++ G    ++GVP    L V+  +  ++  G  P+   A+ I+L   G+    
Sbjct: 220 VTALVQAVLGGIGLAISGVPYATLLTVVMILSCLVQLGPLPVLIPAI-IWLYWTGDTTWG 278

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           T L +W A+ +  +D  +RP L+     LP L    G++GG+   G++GLFIGPVL+   
Sbjct: 279 TVLLVWSAV-VGTLDNVIRPVLIRMGADLPLLLILSGVIGGLIAFGMIGLFIGPVLL--- 334

Query: 339 AVIWK 343
           AV W+
Sbjct: 335 AVTWR 339


>gi|116328176|ref|YP_797896.1| permease [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116330900|ref|YP_800618.1| permease [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|116120920|gb|ABJ78963.1| Permease [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116124589|gb|ABJ75860.1| Permease [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 375

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 86/176 (48%), Gaps = 19/176 (10%)

Query: 178 YRDGFSISQ-QLDSL--GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           Y+DG  + +  LD+L   + L     +K++  V  VIR    G  II+I +G  +     
Sbjct: 193 YQDGKKVERFILDNLPFSKQLEEQVGRKVASAVQTVIR----GNLIISILQGAAVYILLL 248

Query: 235 LAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGN------IFNATCLFLWGAI 287
           +AG+ S      + +  ++IP  G  + +  + +Y+L   N       F  + LF + A+
Sbjct: 249 VAGISSPFLYASLASFFSIIPVVGTSVVWLPIGLYILFLENNPMMAFFFMGSALFFYLAL 308

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           E FI  + L   L   P     L  F  L+GG++  G++GL +GPV++ L+ ++W 
Sbjct: 309 ENFIKPRMLDKKLQAHP-----LLIFLSLIGGIKEFGIMGLVLGPVVVTLVVILWD 359


>gi|115315228|ref|YP_763951.1| hypothetical protein FTH_1508 [Francisella tularensis subsp.
           holarctica OSU18]
 gi|115130127|gb|ABI83314.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica OSU18]
          Length = 346

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 136/303 (44%), Gaps = 23/303 (7%)

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
              S+F+ VIA +  +C+FI PLL +  Y + E+   +      +Q    + + +++IP 
Sbjct: 59  RHKSSFIIVIAIL--LCIFI-PLLIVLSYVITEIISYLQHSESLSQTFSQLSKSIANIP- 114

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
             +      +H  +  ++    +  + +N    +P      G   +      +  ++ ++
Sbjct: 115 --YIGSTLQEHFDNLLNMVNQDKDMIISNLGKILPTI-RYIGFTSVSLLTDFLITLLLVY 171

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
            F     S+ + L  +    F      IS  +    R   L +   A+  G ++   + +
Sbjct: 172 QFLVSSTSLEKFLKKIILKDFHDSDSFISAAIATT-RRVSLAIFFTAMLVGTMMTITFSM 230

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIF------NATCLFLWG-AIE 288
            G+PS +  G I AI +M+P      F    IY+LI  ++F       A  + + G ++ 
Sbjct: 231 VGIPSPILFGFIAAIASMVP------FIVGIIYILIGASVFVIYGVTKAIIILIIGFSLN 284

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           +F  D  ++P ++   +KL F+ +  G++GG+   G +G+F+GPV+   +A +  E +M 
Sbjct: 285 IF-TDNIMQPKIINKQVKLSFVASLIGIMGGIHAFGFIGIFLGPVIFN-VAFVGIEKLMN 342

Query: 349 IKE 351
            +E
Sbjct: 343 NQE 345


>gi|269468325|gb|EEZ80001.1| permease [uncultured SUP05 cluster bacterium]
          Length = 356

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 146/335 (43%), Gaps = 42/335 (12%)

Query: 37  ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV 96
           AL+I   ++  Y     K   SS+  A++ T+ V  + I+PL ++     LE+  L+  +
Sbjct: 35  ALLIAIATFSQYIKLQKKISNSSS--ALLMTLLVTVVLILPLSYILLISGLEISALIQNI 92

Query: 97  VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
                        L  I G           L    SLK+   + L  N  +FI      F
Sbjct: 93  NTNFTVEQSNQLLLQTITG-----------LPLSDSLKVTLNSALSNNLENFIINI-KDF 140

Query: 157 GMIFLDYCLSI--------IFMIIALFFFYRDGFSISQQLDSLG---EHLFPAYWKKISR 205
            ++ L   +S+        I  I +L++FY DG S  ++L  L     HL    + + S 
Sbjct: 141 SVVILKSIVSLSSHFIFFLIITIFSLYYFYIDGKSTVKRLKDLSPLENHLDDILFNQFSS 200

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTA 264
           +   ++ S      +IAI +GL+      + G+P  +  G+  A+ + IP  G  I +  
Sbjct: 201 LSITLVGSVL----VIAILQGLIFSIGVMMIGLPV-LFFGIAMALASFIPVLGGLIIWLP 255

Query: 265 VSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLV-------GGPIKLPF-LPTFFG 315
           +S+YL  +G   +A  +  +GA+ +  I+D  +RP ++            L   L T   
Sbjct: 256 LSLYLYAQGQTTDALIIVFFGAVIIGTIIDHFIRPMVIKKFSQSSNQSSALDHTLITVLS 315

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            + G+   G+LGLFIGP++ A+   I+   + AIK
Sbjct: 316 TLAGIMQFGILGLFIGPIIAAMAISIFD--VYAIK 348


>gi|254283806|ref|ZP_04958774.1| transporter, PerM family [gamma proteobacterium NOR51-B]
 gi|219680009|gb|EED36358.1| transporter, PerM family [gamma proteobacterium NOR51-B]
          Length = 373

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 74/375 (19%), Positives = 160/375 (42%), Gaps = 59/375 (15%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  +++        FF  +L A+I+  T +P++   + K +  +   + +  ++++ + 
Sbjct: 24  LIALVVVACARIFAPFFGIMLWAVILAVTLFPLHQKLVPKFDGRAGRASTLMVLAILLIL 83

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP--G----GMW--ASELWTKH 126
            VP++ L    +    +++S +        PV   +  IP  G     +W  ASE +   
Sbjct: 84  GVPMVTLGISAVDHTTDVLSNMKSGEFEVPPVNPAVGKIPIVGENLIALWESASEDFAGT 143

Query: 127 L-SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           L  H   +   +   L +          S  G + L    S+I   + + + +    ++ 
Sbjct: 144 LRDHKDQVSHYASVLLNSA--------TSMLGAVLLSMG-SMIIAGVMMAYGHAGAAAME 194

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + L +L         +++ R+    +RS  +G+  +A+ + L+LG  + LAG+P   A G
Sbjct: 195 RVLHALVGDAGNNRGQQVLRLSTATVRSVAVGVIGVALIQALLLGVGFLLAGIP---AAG 251

Query: 246 VIT------------AIMAMIP---------GGAPISFTAVSIYLLIKGNIFNATCLFLW 284
           ++T            A++  +P          G+ ++ +  S+Y ++ G           
Sbjct: 252 LLTFAVFFLGILQLPALLITLPIIAYLWGVGDGSTLANSIASVYFIVAGT---------- 301

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                   D  L+P L+G  +  P      G +GG+ +MG+LGLF+G V++A+   I+  
Sbjct: 302 -------ADGFLKPMLLGRGVDAPMPVILLGALGGMVSMGMLGLFVGAVVLAVGYQIFMA 354

Query: 345 SIMAIKENKEKISSN 359
            +  + + +E ++S 
Sbjct: 355 WVDFVCDGREPLTSQ 369


>gi|189347655|ref|YP_001944184.1| hypothetical protein Clim_2181 [Chlorobium limicola DSM 245]
 gi|189341802|gb|ACD91205.1| protein of unknown function UPF0118 [Chlorobium limicola DSM 245]
          Length = 376

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 102/196 (52%), Gaps = 21/196 (10%)

Query: 174 LFFFYRDGFSISQQ------LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           +FFF +DG  + ++      LD   +      ++ + R +  V R+T  G  ++ + +G 
Sbjct: 184 MFFFLKDGRLLLEKIMYYVPLDESDQ------YRLLDRFL-SVTRATLKGTMVVGLIQGS 236

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           V G A  LAG+ S +  G I ++++++P  G P+ +   +IYL + G+   A  +FL+ +
Sbjct: 237 VAGLALHLAGIESALFWGTIMSVLSVVPVLGPPLVWLPAAIYLAVTGHYTEAAAVFLFCS 296

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK--- 343
           I +  +D  LRP L+G   ++  L  FFG +GG+   GL G  IGP++ AL   +W+   
Sbjct: 297 IIVSQLDNVLRPILIGRDTQMHELMIFFGTLGGLGLFGLFGFIIGPIVAALFITVWEIYG 356

Query: 344 ----ESIMAIKENKEK 355
               + +  +K   E+
Sbjct: 357 ETFSDYLQEVKRKSER 372


>gi|291616655|ref|YP_003519397.1| YdiK [Pantoea ananatis LMG 20103]
 gi|291151685|gb|ADD76269.1| YdiK [Pantoea ananatis LMG 20103]
 gi|327393082|dbj|BAK10504.1| permease YdiK [Pantoea ananatis AJ13355]
          Length = 397

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 145/342 (42%), Gaps = 33/342 (9%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  +F+ +L A ++     P+   ++  K      LA + T+  +CL +   L +    M
Sbjct: 26  LAPYFSAILWAAVLAVIFHPL-KRYLRGKLGDRNGLASLLTLVCICLIVFTPLAIIASSM 84

Query: 87  LEMKELVSKVVLANQHGIPV--PRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
           +     V   +  N    PV     L  +PG       W KH     +L   ++   K +
Sbjct: 85  VVEVNTVYHKLQTNSAQFPVVFADLLQHLPG-------WAKHYLAENNLDNATQIQQKLS 137

Query: 145 -----GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG-FSISQQLDSL------G 192
                G  ++   A   G     + +    M+  LFF  +DG + +   L++L       
Sbjct: 138 AFALKGGQYLAGSAFIIGKGTFSFTVGFGIMLYLLFFLLKDGSYLVHLILEALPLSTYVK 197

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            HLF  +          V R+T  G  ++ + +G++ G A+W  G+   +  G +   ++
Sbjct: 198 HHLFMKF--------AAVSRATVKGTVVVGVVQGILGGLAFWFTGIDGSLLWGALMGFLS 249

Query: 253 MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++P  G+ I +   +I+    G ++    L  +  + + +VD  LRP LVG   K+P   
Sbjct: 250 LVPAVGSAIIWVPATIFFFATGALWKGLFLVGFFVVVVGLVDNILRPLLVGKDTKMPDYL 309

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                +GG+   G+ G  IGPV+ AL    W  ++++ ++N+
Sbjct: 310 ILITTLGGMEIYGINGFVIGPVIAALFIACW--NLLSGRDNR 349


>gi|169630868|ref|YP_001704517.1| hypothetical protein MAB_3788c [Mycobacterium abscessus ATCC 19977]
 gi|169242835|emb|CAM63863.1| Conserved hypothetical protein [Mycobacterium abscessus]
          Length = 379

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/324 (20%), Positives = 139/324 (42%), Gaps = 17/324 (5%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF---IVPLL 79
            +YFL+ +   ++ A +  +   P+Y   + K+  S     + AT++++C     ++P+ 
Sbjct: 24  GIYFLRDYLILIVVAGVAAYLFSPLYRR-LGKRFGS----GIAATLTLLCALGAVVIPVG 78

Query: 80  FLFYYGMLEMKELVSKVV--LANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
            L Y   L++  +V  V   +       + +   D+   + A   +      P +L+   
Sbjct: 79  ALVYVATLQITRMVDDVSSWVEGTDMTALGQKAFDVVNSVLARIPFVHVQLTPDTLRQSI 138

Query: 138 ETFLKTNGIDFIPRFASRFG--MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +  +  G   +    S  G     +  C+  +++ ++L        ++ +QL+ LGE +
Sbjct: 139 GSLTENVGHGLLQVLQSTVGSVAAAVAACIIFLYVFVSLLVKQDKVLTLLRQLNPLGEEI 198

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL-GVITAIMAMI 254
              Y  KI  +V    R T  G  +IA+ +G+   ++ ++AG         ++   +++I
Sbjct: 199 TDLYLDKIGAMV----RGTVKGQFVIAMAQGIAGAASVYVAGFRQGFFFFAILLTALSII 254

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P G  I      I +++ G+      +  W  + +  +D  LRPFLV    +L       
Sbjct: 255 PLGGGIVTIPFGIGMILFGHPVGGLFVIAWHLLVVSNIDNVLRPFLVPRGARLDPALMLL 314

Query: 315 GLVGGVRTMGLLGLFIGPVLMALI 338
            +  G+   G  G+ +GPVLM +I
Sbjct: 315 AVFSGIAAFGFWGIVLGPVLMIVI 338


>gi|312797187|ref|YP_004030109.1| hypothetical protein RBRH_01983 [Burkholderia rhizoxinica HKI 454]
 gi|312168962|emb|CBW75965.1| Hypothetical membrane spanning protein [Burkholderia rhizoxinica
           HKI 454]
          Length = 363

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 73/343 (21%), Positives = 139/343 (40%), Gaps = 22/343 (6%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           SLY +  F   ++ A +I   +WP+      +          +   +++ +  +PL    
Sbjct: 27  SLYIMSPFLPALIWATMIVVATWPLMRGAQERLGGRRGRATALMLAALLIVIALPL---- 82

Query: 83  YYGMLEMKELVSKVVLANQHGIPV------PRWLSDIPG-GMWASELWTKHLSHPQSLKI 135
            YG +      +  +L     +P       P WL ++P  G   +  W + L+H     +
Sbjct: 83  -YGAVVAIAAHADTILQYARALPDYRPAPPPAWLHEVPLIGERITSAWQR-LTHAGVDGL 140

Query: 136 LS-ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           L         G  ++   A+  G +     + ++  +I     Y  G + +  +      
Sbjct: 141 LEFVAPYADTGAKWMVSHATAVGGVL----IHLLLTLILCGVLYMHGETAAGAVRRFAYR 196

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L         R+  + IR+  LG+ + A  +  + G   + AG+P    +  IT I+ + 
Sbjct: 197 LADERGTAAVRLAGQAIRAVALGIVVTAAVQSALAGLGLFAAGIPGAGMVCAITLILCLA 256

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G  +     +I+L  +        + +W A  +  +D  +RP L+   + LP L    
Sbjct: 257 QIGPLLPLIGAAIWLFYQDATIAGVAMLVW-AFVVSSLDNVIRPPLIQRGVDLPMLLVLA 315

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           G+VGG+   G++GLFIGPV++   AV +K     I E  + +S
Sbjct: 316 GVVGGLIAFGIVGLFIGPVIL---AVTYKLMHAWIDEQAKAVS 355


>gi|315931421|gb|EFV10389.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 347

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 128/296 (43%), Gaps = 42/296 (14%)

Query: 61  FLAVIATVSVMC-LFIVPLLFLFYYGMLEMKELVSK--VVLANQHGIPVPRWLSDIPGGM 117
           FLA I T + M  LF  P    F Y M+E+ + +    + L  Q    V  +   +P   
Sbjct: 56  FLASILTTTCMVLLFFAP----FVYAMIELAKALKNFDINLVTQTLDYVKNYQFTLPESF 111

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIAL 174
              E   K       L  +S+  L          +AS F   G  FL     I  ++I +
Sbjct: 112 NFLEPKIKEFLASIDLNSISKQIL---------SYASSFTKSGAKFL-----IDMVLICV 157

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGS 231
           F+F+ + +    +L    + + P   K++  +   V  V+      M I+AI +G + G 
Sbjct: 158 FYFFANLY--GTELVIYLKSIIPIDKKELDDVLSEVGNVMAVVLYSMVIVAIFQGALFGL 215

Query: 232 AYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
                G    + +GVI A+ ++IP  GGA I +  VS+Y     N+ +A  +F++  I +
Sbjct: 216 ITMFYGYDG-ILMGVIFAVSSLIPAIGGALI-YVPVSLYEFTSNNLNSALVIFIYSVIVI 273

Query: 290 -FIVDKTLRPF--------LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            FI D  ++P         LV  P K+  L  F  ++ G+ T G  G+ +GP ++ 
Sbjct: 274 SFIADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFGFWGIILGPAILT 329


>gi|311279418|ref|YP_003941649.1| hypothetical protein Entcl_2111 [Enterobacter cloacae SCF1]
 gi|308748613|gb|ADO48365.1| protein of unknown function UPF0118 [Enterobacter cloacae SCF1]
          Length = 374

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 4/151 (2%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           + IR+  LG+ + A+ + ++ G    ++GVP    L V+     ++  G  I      I+
Sbjct: 209 QAIRAVALGVVVTALVQAVLGGIGLAISGVPYATLLTVVMIFSCLVQLGPLIVLVPSIIW 268

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L   G+    T L +W  + +  +D  +RP L+     LP +    G++GG+   G++GL
Sbjct: 269 LYWSGDTTWGTVLLVWSCV-VGTMDNFIRPVLIRMGADLPMILIISGVIGGLIAFGMIGL 327

Query: 329 FIGPVLMALIAVI---WKESIMAIKENKEKI 356
           FIGPVL+A+   +   W   +    +N E++
Sbjct: 328 FIGPVLLAVTWRLFDTWMREVPPPSDNPEEV 358


>gi|92116459|ref|YP_576188.1| hypothetical protein Nham_0862 [Nitrobacter hamburgensis X14]
 gi|91799353|gb|ABE61728.1| protein of unknown function UPF0118 [Nitrobacter hamburgensis X14]
          Length = 360

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 71/330 (21%), Positives = 145/330 (43%), Gaps = 11/330 (3%)

Query: 31  FAPVLS-ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F P+L+ ++++    +P++              A + T+  + + I P  +L    +  +
Sbjct: 37  FVPILAWSIVLTVALYPVFDLLSRLLGGRPRLAAALLTLINLGIVIGPATWLGLSALDGV 96

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           KEL  ++   N      P  + D P  G    E W +  S+ ++       +LK      
Sbjct: 97  KELAGQLNAGNLVVPSPPEGVKDWPLIGPNLYEFWNQASSNIRAALREVAPYLKPLA-GV 155

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +   A   G+  L + LS+        F +  G  + +   S    + P   +    +  
Sbjct: 156 LLALAGNAGVGTLKFLLSVALA----GFLFPYGSQLIEAGKSFLYRIVPEQSEHFLELAG 211

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
             IR+   G+  +AI + L+ G  + LAG+ S   L     I++++  GA I    V I+
Sbjct: 212 ATIRAVSQGVIGVAIIQSLLAGIGFKLAGISSAGLLAFAVMILSIVQVGAAIVLVPVIIW 271

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           + +  +   A  L ++  + + ++D  L+P ++   +  P L  F G++GG    G++GL
Sbjct: 272 IWMDKDFTTALLLTVFLGL-VGVLDNVLKPLVMKRGLTTPTLVIFVGVIGGTLAHGIVGL 330

Query: 329 FIGPVLMALIAVIWKESIMAIKENKEKISS 358
           FIGP++++L    W+ ++  I+ ++   +S
Sbjct: 331 FIGPIILSL---AWELTVAWIRSDRAGTAS 357


>gi|238765277|ref|ZP_04626205.1| hypothetical protein ykris0001_43250 [Yersinia kristensenii ATCC
           33638]
 gi|238696500|gb|EEP89289.1| hypothetical protein ykris0001_43250 [Yersinia kristensenii ATCC
           33638]
          Length = 367

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 94/210 (44%), Gaps = 13/210 (6%)

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS----QQLDSLGEHLFPAYWKKISRIVP 208
           A+  G   +   L ++F I+  F   + G  I     +  D  G+         +  +  
Sbjct: 159 AAHIGYFLIHLALMVLFSILLYFHGEQVGLGIRHFAVRAADKRGD--------AVVVLAA 210

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           K IR+  LG+ + A+ + ++ G    +AG+       V+  I  +   G  +      I+
Sbjct: 211 KAIRAVALGVVVTALVQAVLGGIGLAIAGIQYATLFTVLMFICCVAQLGPLLIMIPAVIW 270

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L   G+    T L +W  + +  +D  LRP+L+     +P +    G++GG+ + G++GL
Sbjct: 271 LYWTGDSTWGTILLVWSCV-VGTMDNVLRPYLIRMEADMPMILILSGVIGGLLSFGMIGL 329

Query: 329 FIGPVLMALIAVIWKESIMAIKENKEKISS 358
           FIGPV++A+   +    +    E +E I+ 
Sbjct: 330 FIGPVVLAISYRLTSAWVSEAPEPEESITE 359


>gi|148261662|ref|YP_001235789.1| hypothetical protein Acry_2679 [Acidiphilium cryptum JF-5]
 gi|326405154|ref|YP_004285236.1| hypothetical protein ACMV_30070 [Acidiphilium multivorum AIU301]
 gi|146403343|gb|ABQ31870.1| protein of unknown function UPF0118 [Acidiphilium cryptum JF-5]
 gi|325052016|dbj|BAJ82354.1| hypothetical protein ACMV_30070 [Acidiphilium multivorum AIU301]
          Length = 352

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 79/137 (57%), Gaps = 2/137 (1%)

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNI 275
           G  +++  +GL+ G  +W  G+ + +  GV+  +++++P  GA I +   ++ L + G+ 
Sbjct: 212 GTVMVSTLQGLLGGLMFWGLGLAAPLLWGVVMGMLSLVPVLGAFIVWIPEAVLLALNGHE 271

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             A  L LWGA+ +  +D  +RP LVG  ++L  +P+F  ++GG+   G  G  +GP+++
Sbjct: 272 EKAIILSLWGALVVGTIDNVVRPVLVGNRLQLHTVPSFIAIIGGLILFGPPGFVLGPLIV 331

Query: 336 ALIAVIWKESIMAIKEN 352
           +   V++ E++ A  E 
Sbjct: 332 SATLVLF-EALRARAEG 347


>gi|238796346|ref|ZP_04639855.1| hypothetical protein ymoll0001_21740 [Yersinia mollaretii ATCC
           43969]
 gi|238719791|gb|EEQ11598.1| hypothetical protein ymoll0001_21740 [Yersinia mollaretii ATCC
           43969]
          Length = 367

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 75/359 (20%), Positives = 154/359 (42%), Gaps = 30/359 (8%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV-IATVSVMCLF 74
           I+ +I+ S + ++ F      A ++   +WP+    + K      +LAV I T+ ++ LF
Sbjct: 21  ILIMIVASFWVVQPFIMGFAWAGMVVIATWPLLIR-LQKLLWGKRWLAVFIMTLLLILLF 79

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL---WTKHLSHPQ 131
           ++P+  L    +     L+      +   +P   WL  +P  M   +L   W   ++   
Sbjct: 80  VIPIALLVSSLVENSGPLIQWASSPSNLRMPDVTWLQSVP--MVGDKLYNSWHTLIAGGG 137

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS----QQ 187
           +  I            ++   A+  G   +   L ++F ++  F   + G  I     + 
Sbjct: 138 NAIIAKVQPYVGAAATWLVAQAAHVGYFLIHLALMVLFSVLLYFHGEQVGLGIRHFAVRA 197

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
            D  G+         +  +  K IR+  LG+ + A+ + ++ G    +AG+       V+
Sbjct: 198 ADKRGD--------AVVVMAAKAIRAVALGVVVTALVQAVLGGIGLAIAGIQYATLFTVL 249

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             I  +   G  +      ++L   G+    T L +W  + +  +D  LRP+L+     +
Sbjct: 250 MFICCVAQLGPLLILVPAILWLYWTGDTTWGTVLLVWSCV-VGTMDNFLRPYLIRMEADM 308

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMAL---IAVIW-------KESIMAIKENKEKI 356
           P +    G++GG+ + G++GLFIGPV++A+   +   W       +ESI  + ++ E++
Sbjct: 309 PMILILSGVIGGLLSFGMIGLFIGPVVLAISYRLTAAWVNEAPEPEESIKEVAKHLEEL 367


>gi|269139133|ref|YP_003295834.1| predicted permease [Edwardsiella tarda EIB202]
 gi|267984794|gb|ACY84623.1| predicted permease [Edwardsiella tarda EIB202]
 gi|304559059|gb|ADM41723.1| Putative membrane protein [Edwardsiella tarda FL6-60]
          Length = 365

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 4/155 (2%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           + IR+  LG+ + A+ + ++ G    ++G+   V L V+  I  +   G  +       +
Sbjct: 208 QAIRAVALGVVVTALAQSVLAGIGLAISGIHYAVLLTVVMFICCLAQLGPLLVLIPAVAW 267

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L   G+   AT L +W  + +  +D  LRP L+     LP L    G++GG+   G++GL
Sbjct: 268 LYWSGDNTWATVLLVWSGV-VGTMDNVLRPALIRLGADLPMLLVLSGVIGGLLAFGMIGL 326

Query: 329 FIGPVLMAL---IAVIWKESIMAIKENKEKISSNF 360
           FIGPV++A+   +  +W     A   +  ++S   
Sbjct: 327 FIGPVVLAVSYRLVSVWISEAPAPLRDARQVSEEL 361


>gi|300722815|ref|YP_003712107.1| putative transport protein [Xenorhabdus nematophila ATCC 19061]
 gi|297629324|emb|CBJ89923.1| putative transport protein [Xenorhabdus nematophila ATCC 19061]
          Length = 369

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 5/185 (2%)

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
           A+  G   L   L +IF ++     Y  G  +   +      L          +  + IR
Sbjct: 158 AANAGRFLLHLALMVIFSVL----LYWKGEQVMLSIRHFAIRLADKRGDSAVLLAAQSIR 213

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
           +  LG+ + A+ + +  G    +AG+P  + L V   +  +   G  +       +L   
Sbjct: 214 AVALGVVVTALVQAIAGGIGLAIAGIPYPLILTVTMFVCCVAQLGPLLVLIPSIAWLYWT 273

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
           G+    T L +W  + L  +D  LRPFL+     LP +    G++GG+ ++G++GLFIGP
Sbjct: 274 GDTTWGTILAIWSLV-LTTMDGVLRPFLIRLGADLPMVLILTGVIGGILSLGVIGLFIGP 332

Query: 333 VLMAL 337
           V++A+
Sbjct: 333 VVLAV 337


>gi|237715047|ref|ZP_04545528.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262409005|ref|ZP_06085550.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294645608|ref|ZP_06723301.1| putative membrane protein [Bacteroides ovatus SD CC 2a]
 gi|229444880|gb|EEO50671.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262353216|gb|EEZ02311.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292639053|gb|EFF57378.1| putative membrane protein [Bacteroides ovatus SD CC 2a]
 gi|295087834|emb|CBK69357.1| Predicted permease [Bacteroides xylanisolvens XB1A]
          Length = 341

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 93/200 (46%), Gaps = 12/200 (6%)

Query: 141 LKTNGIDFIPRFASRFGMIFLD----YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           L  + + FI     R G I ++      +++  MI  L+F    G    +++++    + 
Sbjct: 119 LGKDTLTFIVSILPRIGQIIMESISSLAINLFVMIFVLYFMLIGG----KKMEAYVNDIL 174

Query: 197 PAYWKKISRIVPKV---IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           P        ++ ++   +RS  +G+ ++AI +G V    Y L G P+ + LG +T    +
Sbjct: 175 PFNETNTQEVIHEINMIVRSNAIGIPLLAIIQGGVATIGYLLFGAPNILLLGFLTCFATI 234

Query: 254 IPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP  G  + +  V+ YL I G+ FNA  +  +GAI +   D  +R  L         L T
Sbjct: 235 IPMVGTALVWFPVAAYLAISGDWFNAIGIAAYGAIVVSQSDNLIRFILQKKMADTHPLIT 294

Query: 313 FFGLVGGVRTMGLLGLFIGP 332
            FG+V G+   G +G+  GP
Sbjct: 295 IFGVVIGLPLFGFMGVIFGP 314


>gi|222480361|ref|YP_002566598.1| protein of unknown function UPF0118 [Halorubrum lacusprofundi ATCC
           49239]
 gi|222453263|gb|ACM57528.1| protein of unknown function UPF0118 [Halorubrum lacusprofundi ATCC
           49239]
          Length = 346

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 70/134 (52%), Gaps = 1/134 (0%)

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAV 265
           V  + R   +G  ++A+ + LV G   W AG+P+ V    + A++A++P  GA   +   
Sbjct: 200 VDAMTRGVVIGHIVVALLQALVAGLGLWAAGIPNVVFWTFVMAVLALVPLVGAFFVWGPA 259

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           + YL+    +     L ++G + + +VD   RP ++     L       G+ GG+ ++G 
Sbjct: 260 AAYLVAIDQVTAGVFLAIYGVLVIAMVDNYARPIVIDQQAHLNPAVILLGVFGGIYSIGF 319

Query: 326 LGLFIGPVLMALIA 339
            GLF+GP+++ ++A
Sbjct: 320 TGLFVGPIVIGVLA 333


>gi|205356191|ref|ZP_03222958.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346034|gb|EDZ32670.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 312

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 128/296 (43%), Gaps = 42/296 (14%)

Query: 61  FLAVIATVSVMCL-FIVPLLFLFYYGMLEMKELVSK--VVLANQHGIPVPRWLSDIPGGM 117
           FLA I T + M L F  P    F Y M+E+ + +    + L  Q    V  +   +P   
Sbjct: 21  FLASILTTACMVLLFFAP----FVYAMIELAKALKNFDINLVTQTLDYVKNYQFTLPESF 76

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIAL 174
              E   K       L  +S+  L          +AS F   G  FL     I  ++I +
Sbjct: 77  NFLEPKIKEFLASVDLNSISKQIL---------SYASSFTKSGAKFL-----IDMVLICV 122

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGS 231
           F+F+ + +    +L    + + P   K++  +   V  V+      M I+AI +G + G 
Sbjct: 123 FYFFANLYG--TELVIYLKSIIPIDKKELDDVLSEVGNVMAVVLYSMVIVAIFQGALFGL 180

Query: 232 AYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
                G    + +GVI A+ ++IP  GGA I +  VS+Y     N+ +A  +F++  I +
Sbjct: 181 ITMFYGYDG-ILMGVIFAVSSLIPAIGGALI-YVPVSLYEFASNNLNSALVIFIYSVIVI 238

Query: 290 -FIVDKTLRPF--------LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            FI D  ++P         LV  P K+  L  F  ++ G+ T G  G+ +GP ++ 
Sbjct: 239 SFIADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFGFWGIILGPAILT 294


>gi|74311987|ref|YP_310406.1| putative inner membrane protein [Shigella sonnei Ss046]
 gi|73855464|gb|AAZ88171.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|323169258|gb|EFZ54934.1| hypothetical protein SS53G_0428 [Shigella sonnei 53G]
          Length = 370

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 73/325 (22%), Positives = 149/325 (45%), Gaps = 17/325 (5%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +FI+P+
Sbjct: 23  MIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMVFIIPI 82

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT--KHLSHPQSLKIL 136
             L    +++    + K + +    +P   WL+ IP  +  ++L+    +L       I+
Sbjct: 83  -ALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIP--VIGAKLYAGWHNLLDMGGTAIM 139

Query: 137 SET--FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           ++   ++ T    F+ + A+  G  F+ +C     M++     Y  G  ++Q +      
Sbjct: 140 AKVRPYIGTTTTWFVGQ-AAHIGR-FMVHC---ALMLLFSALLYWRGEQVAQGIRHFATR 194

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS-AYWLAGVPSHVALGVITAIMAM 253
           L          +  + IR+  LG+ + A+ +  VLGS    ++GVP    L V+  +  +
Sbjct: 195 LAGVRGDAAVLLAAQAIRAVALGVVVTALVQA-VLGSIGLAVSGVPYATLLTVLMILSCL 253

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +  G  P+   A+ I+L   G+    T L +W  + +  +D  +RP L+     LP +  
Sbjct: 254 VQLGPLPVLIPAI-IWLYWTGDTTWGTVLLVWSGV-VGTLDNVIRPMLIRMGADLPLILI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMAL 337
             G++GG+   G++GLFIGPVL+A+
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVLLAV 336


>gi|238919816|ref|YP_002933331.1| hypothetical protein NT01EI_1920 [Edwardsiella ictaluri 93-146]
 gi|238869385|gb|ACR69096.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 365

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 76/155 (49%), Gaps = 4/155 (2%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           + IR+  LG+ + A+ + ++ G    ++G+   V L V+  I  +   G  +       +
Sbjct: 208 QAIRAVALGVVVTALAQSVLAGIGLAISGIHYAVLLTVVMFICCLAQLGPLLVLIPAVAW 267

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L   G+   AT L +W  + +  +D  LRP L+     LP L    G++GG+   G++GL
Sbjct: 268 LYWSGDNTWATVLLVWSGV-VGTMDNVLRPALIRLGADLPMLLVLSGVIGGLLAFGMIGL 326

Query: 329 FIGPVLMAL---IAVIWKESIMAIKENKEKISSNF 360
           FIGPV++A+   +  +W   + A  ++  ++    
Sbjct: 327 FIGPVVLAVSYRLVSVWISEVPAPLKDARQVHREL 361


>gi|300870109|ref|YP_003784980.1| hypothetical protein BP951000_0476 [Brachyspira pilosicoli 95/1000]
 gi|300687808|gb|ADK30479.1| putative exported protein [Brachyspira pilosicoli 95/1000]
          Length = 394

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 12/188 (6%)

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKV---IRSTFLGMTIIAIGEGLVLGSAYWLA 236
           DG  + +Q+ SL     P   K + R+  +    IR    G     I +G+     Y + 
Sbjct: 187 DGEYLKEQVSSL----IPIEKKYLDRLFKQASEGIRGIIFGNLFTGIFQGICAFIVYSIF 242

Query: 237 GVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
           GV + +   ++T I + +P  G  I +  + +  +I G I  A    +     + I D  
Sbjct: 243 GVTNSLTFALLTIIASFMPIIGTTIIWIPLGVLFIINGEILRAIIFLVVSWFFITIPDNF 302

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK----ESIMAIKE 351
           +RP L+G  I+L  L  FF ++GGV   GL G+ +GP+   L   I +    E + + KE
Sbjct: 303 VRPLLLGNRIELHPLFIFFAILGGVLFFGLSGIILGPLTFILFFEIMRMYNEERLFSDKE 362

Query: 352 NKEKISSN 359
            K++  +N
Sbjct: 363 EKKRAVNN 370


>gi|198276942|ref|ZP_03209473.1| hypothetical protein BACPLE_03147 [Bacteroides plebeius DSM 17135]
 gi|198270467|gb|EDY94737.1| hypothetical protein BACPLE_03147 [Bacteroides plebeius DSM 17135]
          Length = 338

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 87/173 (50%), Gaps = 4/173 (2%)

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK-KISRIVPKVIRSTFLGMTI 220
           D  +++   I+ LFF   +G S+   + +L    F A  K ++ + V  ++RS  +G+ +
Sbjct: 140 DLLVNLCVAIMLLFFMLYEGKSMEHYVSTLLP--FKAENKIEVLKKVQLMVRSNAIGIPL 197

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNAT 279
           +AI +G +    Y +   P+     ++TA  ++IP  G  + +  ++IY LI G+  NA 
Sbjct: 198 LAIIQGFISLGGYLICDAPNPFLSAMLTAFASVIPLVGTALVWVPITIYFLIVGSWVNAL 257

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
            +  +GAI +   D  +R  L      +  L T FG+V G+   G +G+  GP
Sbjct: 258 MMLGYGAIIVSQCDNLIRFLLQKKMADVHPLITIFGVVAGLPLFGFMGVIFGP 310


>gi|157415601|ref|YP_001482857.1| hypothetical protein C8J_1281 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|283956749|ref|ZP_06374225.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni 1336]
 gi|157386565|gb|ABV52880.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni 81116]
 gi|283791724|gb|EFC30517.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni 1336]
 gi|307748244|gb|ADN91514.1| Putative membrane protein [Campylobacter jejuni subsp. jejuni M1]
          Length = 347

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 128/296 (43%), Gaps = 42/296 (14%)

Query: 61  FLAVIATVSVMC-LFIVPLLFLFYYGMLEMKELVSK--VVLANQHGIPVPRWLSDIPGGM 117
           FLA I T + M  LF  P    F Y M+E+ + +    + L  Q    V  +   +P   
Sbjct: 56  FLASILTTTCMVLLFFAP----FVYAMIELAKALKNFDINLVTQTLDYVKNYQFTLPESF 111

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIAL 174
              E   K       L  +S+  L          +AS F   G  FL     I  ++I +
Sbjct: 112 NFLEPKIKEFLASIDLNSISKQIL---------SYASSFTKSGAKFL-----IDMVLICV 157

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGS 231
           F+F+ + +    +L    + + P   K++  +   V  V+      M I+AI +G + G 
Sbjct: 158 FYFFANLY--GTELVIYLKSIIPIDKKELDDVLSEVGNVMAVVLYSMVIVAIFQGALFGL 215

Query: 232 AYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
                G    + +GVI A+ ++IP  GGA I +  VS+Y     N+ +A  +F++  I +
Sbjct: 216 ITMFYGYDG-ILMGVIFAVSSLIPAIGGALI-YVPVSLYEFASNNLNSALVIFIYSVIVI 273

Query: 290 -FIVDKTLRPF--------LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            FI D  ++P         LV  P K+  L  F  ++ G+ T G  G+ +GP ++ 
Sbjct: 274 SFIADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFGFWGIILGPAILT 329


>gi|300023545|ref|YP_003756156.1| hypothetical protein Hden_2034 [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299525366|gb|ADJ23835.1| protein of unknown function UPF0118 [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 354

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 145/320 (45%), Gaps = 17/320 (5%)

Query: 25  YFLKGFFAPVLSAL----IIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           Y      APVL+ L    I+    +PIY  +++    S  F A   T+  M + + P+ +
Sbjct: 28  YLSFAIVAPVLTILVWSAILTVALYPIYR-WLAHWLNSPKFAAAFVTLLCMLVVLAPVTW 86

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVP-RWLSDIP-GGMWASELWTKHLSHPQS-LKILS 137
           L  +G+L   E++ +  L +   IP P   + D P  G     LWT+ ++   S L  L+
Sbjct: 87  L-GFGLLNGVEVIVQK-LDSGLSIPAPPESIKDWPIAGDQIYRLWTRAITDISSQLAELA 144

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
                  G  ++ + AS   +  L + LSII       F +  G  + + L  + E +  
Sbjct: 145 PALKPVAG--WLLQVASNVLIGLLKFLLSIIVA----GFLFCPGPKLVKVLARIMERVLN 198

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
               ++  +    IR+   G+  +A+ +  + G  + +AGVP        + ++ ++  G
Sbjct: 199 PRGTEMVELAGATIRNISRGVLGVALLQSFLGGIGFLVAGVPGAGIFAFASLVLGILQIG 258

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
             + F  + ++  +     +A  LF    + + ++D  LRP L+   +  P L    G++
Sbjct: 259 PGVLFLPILVWSWMTQEALHA-LLFTAYMVPIGLLDNVLRPILMTRGLTTPMLVIVIGVI 317

Query: 318 GGVRTMGLLGLFIGPVLMAL 337
           GG    G++GLF+GP+++++
Sbjct: 318 GGTIAYGIIGLFVGPIILSV 337


>gi|317406579|gb|EFV86769.1| hypothetical protein HMPREF0005_05760 [Achromobacter xylosoxidans
           C54]
          Length = 368

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 161/353 (45%), Gaps = 30/353 (8%)

Query: 8   PQGIMRWMIMFIILV-----SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           P  + R +++ +IL      SLY LK F   ++ A  I   +WP+  + + ++     +L
Sbjct: 8   PADLARNLLVVVILSALMIGSLYVLKPFLFGLIWATTIVVATWPVMLA-VQRRCGGRRWL 66

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV------PRWLSDIP-G 115
           A +A    M + ++ ++ L  Y  +    L    ++    G+P       P W+  IP G
Sbjct: 67  ATVA----MLIVLLVVIVLPLYQAISTLALHGGAIMTAIKGLPDYALMAPPGWVRGIPLG 122

Query: 116 GMWASELWTKHLSHPQSLKILS--ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
           G   +  W + L+   +  +L+  E ++ T    ++   A+  G+  +   ++I+   I 
Sbjct: 123 GERIAHEW-QALADAGAGGLLARLEPYI-TMAAKWLLSNAAIVGVFVMHMLITIVIAGI- 179

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
               Y  G   +  +      L         R+    IR+  LG+ + A+ +  + G   
Sbjct: 180 ---LYSQGDVAANFMQRFANRLAGHRGVAAIRLAGLSIRAVALGIVVTAVVQSALGGLGL 236

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAV--SIYLLIKGNIFNATCLFLWGAIELFI 291
           W+AGVP   A G+ITA+M M+       F  +   +  L + ++  A  L L  A+ + +
Sbjct: 237 WIAGVP---AAGIITALMLMLCLAQLGPFLPLLGGVIWLFQNDMKVAAVLLLVWAVLVTM 293

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           +D  LRP L+   + L  L    G++GG+   G++GLFIGPV++A+ + + K 
Sbjct: 294 LDNLLRPLLIKRGVNLSMLLILAGVLGGMFAFGIVGLFIGPVILAVTSTLLKA 346


>gi|323956589|gb|EGB52327.1| ydiK protein [Escherichia coli H263]
          Length = 247

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 6/179 (3%)

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
           F+ +C     M++     Y  G  ++Q +      L          +  + IR+  LG+ 
Sbjct: 40  FMVHC---ALMLLFSALLYWRGEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVV 96

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNA 278
           + A+ + ++ G    ++GVP    L V+  +  ++  G  P+   A+ I+L   G+    
Sbjct: 97  VTALVQAVLGGIGLAVSGVPYATLLTVLMILSCLVQLGPLPVLIPAI-IWLYWTGDTTWG 155

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           T L +W  + +  +D  +RP L+     LP +    G++GG+   G++GLFIGPVL+A+
Sbjct: 156 TVLLVWSGV-VGTLDNVIRPMLIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAV 213


>gi|27378566|ref|NP_770095.1| hypothetical protein blr3455 [Bradyrhizobium japonicum USDA 110]
 gi|27351714|dbj|BAC48720.1| blr3455 [Bradyrhizobium japonicum USDA 110]
          Length = 351

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 91/179 (50%), Gaps = 15/179 (8%)

Query: 192 GEHLFPAYWKKISRIVPK-----------VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  L  A    +SRIVP+            IR+   G+  IA+ + L+ G  + LAG+P 
Sbjct: 172 GPQLVAAGRSFLSRIVPEQSEHFLDLAGATIRAVAQGVIGIAVVQALLAGIGFKLAGIPI 231

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L ++  +++++  G  I    V I++    ++  A  L L+  I + I+D  L+P +
Sbjct: 232 AGLLALLVLLLSIVQIGGAIIMLPVMIWIWTDKDVTVAVLLTLFLGI-VSILDNILKPLV 290

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +G  +  P L    G++GG    G++GLFIGP+++   +V W+ ++  I+ ++   +S 
Sbjct: 291 MGRGLTTPALVILIGVIGGTLGHGIVGLFIGPIVL---SVAWELTVAWIRTDRASAASQ 346


>gi|282158796|gb|ADA78187.1| hypothetical protein NE061598_02800 [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 341

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 65/307 (21%), Positives = 135/307 (43%), Gaps = 31/307 (10%)

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
              S+F+ VIA +  +C+FI PLL +  Y + E+   +      +Q    + + +++IP 
Sbjct: 54  RHKSSFIIVIAIL--LCIFI-PLLIVLSYVITEIISYLQHSESLSQTFSQLSKSIANIP- 109

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
             +      +H  +  ++    +  + +N    +P      G   +      +  ++ ++
Sbjct: 110 --YIGSTLQEHFDNLLNMVNQDKDMIISNLGKILPTI-RYIGFTSVSLLTDFLITLLLVY 166

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
            F     S+ + L  +    F      IS  +    R   L + + A+  G ++   + +
Sbjct: 167 QFLVSSTSLEKFLKKIILKDFHDSDSFISAAIATT-RRVSLAIFLTAMLVGTMMTITFSM 225

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--- 292
             +PS +  G I AI +M+P      F    IY+LI  ++F      ++GA +  I+   
Sbjct: 226 VDIPSPILFGFIAAIASMVP------FMVGIIYILIGASVF-----VIYGATKAIIILII 274

Query: 293 --------DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                   D  ++P ++   +KL F+ +  G++GG+   G +G+F+GPV+   +A +  E
Sbjct: 275 GFSLNIFTDNIMQPKIINKQVKLSFVASLIGIMGGIHAFGFIGIFLGPVIFN-VAFVGIE 333

Query: 345 SIMAIKE 351
            +M  +E
Sbjct: 334 KLMNNQE 340


>gi|240171099|ref|ZP_04749758.1| hypothetical protein MkanA1_17441 [Mycobacterium kansasii ATCC
           12478]
          Length = 385

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 77/345 (22%), Positives = 147/345 (42%), Gaps = 19/345 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E  L  +  +  + M  +L   YFL+ +F  ++ A +  +   P+++ F   K  S+   
Sbjct: 4   EFTLTQKRALAILTMVALLFGAYFLRDYFVLIVVAAVGAYLFTPLFTWF--NKRLSTGLS 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVL------ANQHGIPVPRWLSDIPGG 116
           A    ++ +    +P+  L    ++++  +V  V         ++ G  V R ++D    
Sbjct: 62  ATCTVLTALASVFIPVALLVALAVVQVARMVDNVAEWFNTTDPSELGDKVLRLVND---- 117

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM-IIALF 175
           + A   +      P+ L+    +  +T G   +       G +      +I+F+ +    
Sbjct: 118 LLARVPFLHVTVTPEMLRNAMISAARTVGTWLLHVLQGAAGSLAGAVTSAIVFLYVFVAL 177

Query: 176 FFYRDGF-SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
              RD   ++  QL+ LGE +   Y +K+  +V    R T  G  +IA+ +G+   ++ +
Sbjct: 178 LLNRDKLRTLIGQLNPLGEEVTDLYLRKMGSMV----RGTVNGQFVIALCQGVAGAASIY 233

Query: 235 LAGVPSHVAL-GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
           LAG      +  ++   +++IP G  I      I ++  GNI     + LW  + +  +D
Sbjct: 234 LAGFHHGFFIFAIVLTALSIIPLGGGIVTIPFGIGMIFYGNIAGGVFVVLWHLLVVTNID 293

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             LRP LV    +L        +  G+   G  G+ IGPVLM LI
Sbjct: 294 NFLRPILVPRDARLNSALMLLSVFAGIGMFGPWGIIIGPVLMILI 338


>gi|149189962|ref|ZP_01868241.1| hypothetical protein VSAK1_01632 [Vibrio shilonii AK1]
 gi|148836277|gb|EDL53235.1| hypothetical protein VSAK1_01632 [Vibrio shilonii AK1]
          Length = 378

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 156/346 (45%), Gaps = 28/346 (8%)

Query: 9   QGIMRWMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIY----SSFISKKEESSTFLA 63
           +  +R  ++ I+L   Y  +K F  PVL   II     P+     SS   K+  ++T ++
Sbjct: 19  ESAIRIGLLVILLTFTYDIIKPFIIPVLWGSIIAVALLPLTKKLESSLGGKRGLAATLVS 78

Query: 64  VIATVSVMCLFIVPLLFL---FYYGMLEMKELVSKVVLANQHGIPVP-RWLSDIPG-GMW 118
           +I     + L ++P + +    Y G+    E    V+ + +  IP P   ++DIP  G  
Sbjct: 79  LIG----ISLLVIPFVMVSGSIYEGVAHTTE----VIQSGEIKIPGPTSKVADIPVIGDK 130

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
              +W    ++ +  K + +   +  G  F+   AS  G       + II + IA  F  
Sbjct: 131 LYSIWNLFATNME--KAIQQFLPEIKG--FLGTVASILGGALTSLIMFIISLAIAGGFMA 186

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                IS  L+++         ++ + ++   IRS  LG+  +A  +  ++G+A ++  V
Sbjct: 187 H-AEKISGALETVAVRAVGKKAEQWANLMAATIRSVLLGVVGVAFIQAAIIGAAMFVFKV 245

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P+   L + T I+ +    A +    V  Y+   G+  + T   +W A+   + D  L+P
Sbjct: 246 PAAGLLTLATLILCIAQLPALLIVAPVIFYVYSTGDGTSTTLFTIW-ALAGGLSDNILKP 304

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            L+G  + +P      G +GG+   G++GLF+G +++A    IW E
Sbjct: 305 MLMGRGVDVPMPIILIGAIGGMLFAGIIGLFLGAIILA----IWYE 346


>gi|86151004|ref|ZP_01069220.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315124803|ref|YP_004066807.1| hypothetical protein ICDCCJ07001_1299 [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85842174|gb|EAQ59420.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315018525|gb|ADT66618.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 347

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 128/296 (43%), Gaps = 42/296 (14%)

Query: 61  FLAVIATVSVMC-LFIVPLLFLFYYGMLEMKELVSK--VVLANQHGIPVPRWLSDIPGGM 117
           FLA I T + M  LF  P    F Y M+E+ + +    + L  Q    V  +   +P   
Sbjct: 56  FLASILTTACMVLLFFAP----FVYAMIELAKALKNFDINLVTQTLDYVKNYQFTLPESF 111

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIAL 174
              E   K       L  +S+  L          +AS F   G  FL     I  ++I +
Sbjct: 112 NFLEPKIKEFLASIDLNSISKQIL---------SYASSFTKSGAKFL-----IDMVLICV 157

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGS 231
           F+F+ + +    +L    + + P   K++  +   V  V+      M I+AI +G + G 
Sbjct: 158 FYFFANLY--GTELVIYLKSIIPIDKKELDDVLSEVGNVMAVVLYSMVIVAIFQGALFGL 215

Query: 232 AYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
                G    + +GVI A+ ++IP  GGA I +  VS+Y     N+ +A  +F++  I +
Sbjct: 216 ITMFYGYDG-ILMGVIFAVSSLIPAIGGALI-YVPVSLYEFASNNLNSALVIFIYSVIVI 273

Query: 290 -FIVDKTLRPF--------LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            FI D  ++P         LV  P K+  L  F  ++ G+ T G  G+ +GP ++ 
Sbjct: 274 SFIADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFGFWGIILGPAILT 329


>gi|56707640|ref|YP_169536.1| hypothetical protein FTT_0501c [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670111|ref|YP_666668.1| hypothetical protein FTF0501c [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456709|ref|ZP_03665182.1| hypothetical protein FtultM_02652 [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370155|ref|ZP_04986161.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874457|ref|ZP_05247167.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604132|emb|CAG45134.1| conserved hypothetical membrane protein [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110320444|emb|CAL08517.1| conserved hypothetical membrane protein [Francisella tularensis
           subsp. tularensis FSC198]
 gi|151568399|gb|EDN34053.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840456|gb|EET18892.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis MA00-2987]
          Length = 346

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 65/307 (21%), Positives = 135/307 (43%), Gaps = 31/307 (10%)

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
              S+F+ VIA +  +C+FI PLL +  Y + E+   +      +Q    + + +++IP 
Sbjct: 59  RHKSSFIIVIAIL--LCIFI-PLLIVLSYVITEIISYLQHSESLSQTFSQLSKSIANIP- 114

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
             +      +H  +  ++    +  + +N    +P      G   +      +  ++ ++
Sbjct: 115 --YIGSTLQEHFDNLLNMVNQDKDMIISNLGKILPTI-RYIGFTSVSLLTDFLITLLLVY 171

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
            F     S+ + L  +    F      IS  +    R   L + + A+  G ++   + +
Sbjct: 172 QFLVSSTSLEKFLKKIILKDFHDSDSFISAAIATT-RRVSLAIFLTAMLVGTMMTITFSM 230

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--- 292
             +PS +  G I AI +M+P      F    IY+LI  ++F      ++GA +  I+   
Sbjct: 231 VDIPSPILFGFIAAIASMVP------FMVGIIYILIGASVF-----VIYGATKAIIILII 279

Query: 293 --------DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                   D  ++P ++   +KL F+ +  G++GG+   G +G+F+GPV+   +A +  E
Sbjct: 280 GFSLNIFTDNIMQPKIINKQVKLSFVASLIGIMGGIHAFGFIGIFLGPVIFN-VAFVGIE 338

Query: 345 SIMAIKE 351
            +M  +E
Sbjct: 339 KLMNNQE 345


>gi|293396334|ref|ZP_06640612.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
 gi|291421123|gb|EFE94374.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
          Length = 349

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 66/310 (21%), Positives = 131/310 (42%), Gaps = 34/310 (10%)

Query: 43  TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH 102
            +WP+     +      +   ++ T+ ++ LF++P+  L    +     +V+      + 
Sbjct: 30  ATWPLLIKLQNLLWGRRSLAVLVMTLILIVLFVMPIALLVNSVVDNSAPIVAWASTPGKV 89

Query: 103 GIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI--- 159
            IP   WL+ IP  M   ++++ +            T + + G   I +    FG     
Sbjct: 90  HIPDLAWLNSIP--MIGDKVYSSY-----------HTLINSGGGALIAKVQPYFGQTATW 136

Query: 160 ----------FLDYC-LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
                     FL +C L ++F ++     Y  G  ++  +      L          +  
Sbjct: 137 FAAQAAHIGRFLMHCSLMVLFSVL----LYARGEQVALGIRHFAVRLGAERGDAAVLLGG 192

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
           + IR+  LG+ + A+ + ++      + G+P+   L V+  I  +   G  P+   A+ I
Sbjct: 193 QAIRAVALGVVVTALVQSVLGAIGLAITGIPAATLLAVLMFIFCVAQLGPLPVLIPAI-I 251

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +L   G+    T L +W  + +  +D  LRP L+     LP +    G++GG+   G++G
Sbjct: 252 WLYWSGDTTWGTVLLVWSCV-VGTLDNFLRPVLIRMGADLPMILILSGVIGGLLAFGMIG 310

Query: 328 LFIGPVLMAL 337
           LFIGPV++A+
Sbjct: 311 LFIGPVVLAV 320


>gi|167753079|ref|ZP_02425206.1| hypothetical protein ALIPUT_01349 [Alistipes putredinis DSM 17216]
 gi|167659393|gb|EDS03523.1| hypothetical protein ALIPUT_01349 [Alistipes putredinis DSM 17216]
          Length = 361

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 73/138 (52%), Gaps = 1/138 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAP 259
           ++ +R V  ++RS  +G+ ++A+ +G V    YWL GVP  +  GV+T +  ++P  G  
Sbjct: 189 QEFTREVVMIVRSNAIGIPLLAVIQGAVALVGYWLCGVPWALFWGVVTCVATIVPLLGTA 248

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +  ++ YL + G+   A  L  +G + +  VD   R  L         L T FG++ G
Sbjct: 249 LVWLPLAAYLGLIGHWGAAVGLLAYGVVVITQVDNLARFVLQKRMADTHPLVTIFGVIIG 308

Query: 320 VRTMGLLGLFIGPVLMAL 337
           +   G +G+  GPVL+++
Sbjct: 309 LSLFGFMGVIFGPVLLSI 326


>gi|298481866|ref|ZP_07000056.1| conserved hypothetical protein [Bacteroides sp. D22]
 gi|298272088|gb|EFI13659.1| conserved hypothetical protein [Bacteroides sp. D22]
          Length = 341

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 93/200 (46%), Gaps = 12/200 (6%)

Query: 141 LKTNGIDFIPRFASRFGMIFLD----YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           L  + + FI     R G I ++      +++  MI  L+F    G    +++++    + 
Sbjct: 119 LGKDTLTFIVSILPRIGQIIMESISSLAINLFVMIFVLYFMLIGG----KKMEAYVNDIL 174

Query: 197 PAYWKKISRIVPKV---IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           P        ++ ++   +RS  +G+ ++AI +G V    Y L G P+ + LG +T    +
Sbjct: 175 PFNETNTQEVIHEINMIVRSNAIGIPLLAIIQGGVAMIGYLLFGAPNILMLGFLTCFATI 234

Query: 254 IPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP  G  + +  V+ YL I G+ FNA  +  +GAI +   D  +R  L         L T
Sbjct: 235 IPMVGTALVWFPVAAYLAISGDWFNAIGIAAYGAIVVSQSDNLIRFILQKKMADTHPLIT 294

Query: 313 FFGLVGGVRTMGLLGLFIGP 332
            FG+V G+   G +G+  GP
Sbjct: 295 IFGVVIGLPLFGFMGVIFGP 314


>gi|322833507|ref|YP_004213534.1| hypothetical protein Rahaq_2804 [Rahnella sp. Y9602]
 gi|321168708|gb|ADW74407.1| protein of unknown function UPF0118 [Rahnella sp. Y9602]
          Length = 365

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 4/178 (2%)

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
           F+ +C     M++     Y  G +++  +      L          +  + IR+  LG+ 
Sbjct: 164 FIVHC---ALMLLFSALLYSRGENVAMGIRHFAVRLAAERGDAAVILAGQAIRAVALGVV 220

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNAT 279
           + AI + ++ G    +AG+P    L V+  +  +   G  +      I+L   G+    T
Sbjct: 221 VTAIVQSVLGGIGLAIAGIPYATVLTVVMFVCCVAQIGPLLVLIPAIIWLYWSGDNTWGT 280

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
            L +W  + +  +D  LRP L+     LP L    G++GG+   G++GLFIGPV++A+
Sbjct: 281 VLLVWSCV-VGSLDNVLRPVLIRMGADLPMLLILSGVIGGLFAFGMIGLFIGPVVLAV 337


>gi|312969715|ref|ZP_07783898.1| UPF0118 inner membrane protein ydiK [Escherichia coli 1827-70]
 gi|310338000|gb|EFQ03089.1| UPF0118 inner membrane protein ydiK [Escherichia coli 1827-70]
          Length = 207

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 79/163 (48%), Gaps = 3/163 (1%)

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
             Y  G  ++Q +      L          +  + IR+  LG+ + A+ + ++ G    +
Sbjct: 13  LLYWRGEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAV 72

Query: 236 AGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           +GVP    L V+  +  ++  G  P+   A+ I+L   G+    T L +W  + +  +D 
Sbjct: 73  SGVPYATLLTVLMILSCLVQLGPLPVLIPAI-IWLYWTGDTTWGTVLLVWSGV-VGTLDN 130

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
            +RP L+     LP +    G++GG+   G++GLFIGPVL+A+
Sbjct: 131 VIRPMLIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAV 173


>gi|315231402|ref|YP_004071838.1| hypothetical protein TERMP_01640 [Thermococcus barophilus MP]
 gi|315184430|gb|ADT84615.1| hypothetical protein TERMP_01640 [Thermococcus barophilus MP]
          Length = 327

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 110/233 (47%), Gaps = 18/233 (7%)

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFAS---RFGMIFLDYCLSIIFMIIALFFFYR 179
           W++  + P  L  + + F       F P+F+     +      Y L ++  ++  ++F  
Sbjct: 96  WSQTFTFPFGLTNVIQKFYA----QFTPKFSEYILSYTFSIPKYLLQLVIFVVMFYYFLV 151

Query: 180 DGFSISQQLDSL----GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG-SAYW 234
              +I +Q+  L     + L     K+    +  +IR+  L    IA G  + LG   + 
Sbjct: 152 SSEAIRRQISLLLPQENKELANKLLKRADLTLQALIRAWLL--LNIAKGILMTLGFIVFQ 209

Query: 235 LAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-I 291
           ++ VP+ V  G +T + + +P   G  I + A +IYL   GN+  A  L ++G + +  +
Sbjct: 210 VSDVPTAVIAGFLTVLFSFVPLFEGWMI-WLAGAIYLFKNGNVITAILLAVYGFVFVSPL 268

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            D T+RP LV    +L  +    G++GG  + G+ GL IGP+++ L+  + KE
Sbjct: 269 PDFTVRPKLVAKGAQLDEVMVLVGMIGGAWSFGVKGLIIGPIVLNLVVALLKE 321


>gi|118468766|ref|YP_889482.1| hypothetical protein MSMEG_5237 [Mycobacterium smegmatis str. MC2
           155]
 gi|118170053|gb|ABK70949.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2
           155]
          Length = 395

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 68/334 (20%), Positives = 135/334 (40%), Gaps = 31/334 (9%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           +L+  YFL+ FF  ++ A +  +   P+Y   +  +  +S     +  ++ + + I+P+ 
Sbjct: 21  LLLGAYFLRTFFVLIVMAAVGAYLFSPLYQRLL--RRFNSGIAVTLTVLAALLMVIIPVS 78

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            + +  ++++ ++V+ V            W++D               S    +  L   
Sbjct: 79  LIVFLAIVQVSQMVNTV----------SAWVADTDLSTLGDRTLQFINSTADRVPFLDID 128

Query: 140 FLKTNGIDFIPRFASRFGMIFLD------------YCLSIIFM--IIALFFFYRDGFSIS 185
               +  D I   + R G   L                SIIF+   I+L        ++ 
Sbjct: 129 VTPESLRDAIVTVSQRVGEWLLGVLQGALGGLAGALTASIIFLYVFISLLVNSEKVTTLV 188

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV-AL 244
           +QL+ LGE +   Y  K + +V   ++  F    +IA+ +G+    + ++AG  +     
Sbjct: 189 RQLNPLGEEITDLYLAKTAAMVKGTVKGQF----VIALAQGISGAISIYIAGFHNGFFVF 244

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            ++   +++IP G  I      I ++  GN      +  +  + +  +D  LRP LV   
Sbjct: 245 AILLTALSVIPLGGGIVTIPFGIGMMFFGNTIGGIFIVAFHILVVTNIDNVLRPILVPKA 304

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
            +L        +  G+   G  GL IGPVLM +I
Sbjct: 305 ARLDAALMLLAVFAGIAMFGFFGLVIGPVLMIII 338


>gi|85059408|ref|YP_455110.1| putative inner membrane protein [Sodalis glossinidius str.
           'morsitans']
 gi|84779928|dbj|BAE74705.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 366

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 108/253 (42%), Gaps = 18/253 (7%)

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           LV+     ++  +P   WL DIP  M   +L++      QSL       L +    +I +
Sbjct: 96  LVAWATQPDRLTLPALAWLQDIP--MVGRKLYSAW----QSLISGGSAPLMSKIQPYIGK 149

Query: 152 FAS-------RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            AS         G + L   L I+F ++      R G ++      LG     A      
Sbjct: 150 AASWLLGQVANLGSLLLHCGLMILFSVLLYLRGERVGMAVRHFAIRLGAERGDAS----V 205

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            +  + IR+  +G+ + AI + ++ G    + G+P    L V   ++ +   G       
Sbjct: 206 LLAAQAIRAVAMGVVLTAIVQSVLGGVGLAITGIPLATVLTVTMFVLCIAQLGPLPVLIP 265

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             I+L   G+    T L +W  + +  +D  LRP  +     LP L    G++GG+   G
Sbjct: 266 AMIWLYWSGDTTWGTILLVWSCV-VATLDNILRPIFIHMGADLPMLLVLCGVLGGLLAFG 324

Query: 325 LLGLFIGPVLMAL 337
           ++GLFIGPV++A+
Sbjct: 325 MIGLFIGPVVLAV 337


>gi|261822011|ref|YP_003260117.1| inner membrane protein [Pectobacterium wasabiae WPP163]
 gi|261606024|gb|ACX88510.1| protein of unknown function UPF0118 [Pectobacterium wasabiae
           WPP163]
          Length = 369

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 139/327 (42%), Gaps = 14/327 (4%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I  +I+   + ++ F      A ++   +WP+   F +      +   ++ T  ++ LFI
Sbjct: 22  ITIMIIACFWVVQPFILGFAWACMVVIATWPLLIKFQALLWGRRSLAVLVMTFLLILLFI 81

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS--- 132
           VP+  L    +     L+S          P   WL+ IP  +   +L+    +  QS   
Sbjct: 82  VPIAVLISSVVDNSSALMSWGARQENFSPPTLEWLTSIP--LVGEKLFNSWQALLQSGGS 139

Query: 133 --LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                +   F KT    ++   A+  G  FL +C     M+I     Y  G ++++ +  
Sbjct: 140 GLFAKVQPYFGKTA--TWLVAQAAHIGR-FLMHC---TLMLIFSALLYYKGEAVAKAVRH 193

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
               L          +  + IR+  LG+ + AI + ++ G    L+G+P    L V+  +
Sbjct: 194 FAIRLGQERGDAAVILAAQSIRAVALGVVVTAIVQSVLGGIGLGLSGIPYTTLLTVLMFL 253

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             +   G  +      I+L   G+    T L +W  + +  +D  +RP L+     LP L
Sbjct: 254 CCLAQLGPLLVLIPAIIWLYWTGDNTWGTILLVWSCV-VGTIDNVIRPMLIRMGADLPML 312

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMAL 337
               G++GG+   G++GLFIGPV++A+
Sbjct: 313 LILSGVIGGLLAFGMIGLFIGPVVLAV 339


>gi|86141183|ref|ZP_01059729.1| hypothetical protein MED217_04177 [Leeuwenhoekiella blandensis
           MED217]
 gi|85831742|gb|EAQ50197.1| hypothetical protein MED217_04177 [Leeuwenhoekiella blandensis
           MED217]
          Length = 354

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 86/162 (53%), Gaps = 7/162 (4%)

Query: 189 DSLGEHLF---PAYWKKISRIVPK---VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           D L + L+   P   + I+RI  +   +++S  LG+ ++A+ +G+V    +++ GVP   
Sbjct: 166 DKLHQSLYAFIPLNKENIARIGHESVAMVKSNALGIPLVALAQGIVALIGFFIFGVPDPF 225

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
              VITAI +MIP  G  +    V+I ++  GN   A  + ++G + +   D  +R +++
Sbjct: 226 FWFVITAIGSMIPFIGTLLGIVPVTILMIASGNNLQAVGIAIYGLVVVGSTDNLIRLYVL 285

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                +  L T  G++ GV   G +GL  GP+L++L  ++ K
Sbjct: 286 ERLANVHPLVTLIGVIVGVPLFGFIGLIFGPLLISLFLLVVK 327


>gi|116753687|ref|YP_842805.1| hypothetical protein Mthe_0372 [Methanosaeta thermophila PT]
 gi|116665138|gb|ABK14165.1| protein of unknown function UPF0118 [Methanosaeta thermophila PT]
          Length = 339

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 152/372 (40%), Gaps = 69/372 (18%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIG----FTSWPIYSSFISKKEESSTFLAVIATV 68
            WMI  ++L++   +  F  P++  +I+G    +   PI   F  +K   S     IAT+
Sbjct: 6   NWMIA-VVLIAFIAIAYFMFPLVDGIILGTVFAYIGRPIRDMFGPRKRLGSA----IATI 60

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +    IVP+  +   G++E+                   W++  PG M A E+     S
Sbjct: 61  GI----IVPISLVLILGVMEIANFF--------------MWIAQNPGSM-AREMS----S 97

Query: 129 HPQSLKILSETFLKTNG-----IDFIPRFASRFGMIFLDY-------CLSIIFMIIALFF 176
               L+I  E +    G     + F+   A+R  M  LDY        ++II  I   +F
Sbjct: 98  TISGLEIPDEIYTLITGSLQSILSFVADVAAR--MPLLDYGRRVVLLAVNIIVAIPVCYF 155

Query: 177 FYRDG-------FSI--SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
              DG       F+I   + LD+     + AY+ +I RI+  +    FLG    AI   +
Sbjct: 156 LLCDGERFVDSWFTIVPEESLDT-----YRAYFNRIDRILSGI----FLGSMYTAIVGSV 206

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           +    ++   VP   A+  +  I  ++P   A      VSIY  I      A   F   +
Sbjct: 207 ISAIVFYAFDVPRPFAMASLVFIAGLVPALTAWAVIVPVSIYRYIHMGPAEALMFFAVAS 266

Query: 287 IELFIVDK-TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW--- 342
             +++  +  +RP+LV     +  L      +GG    G+ G F+ P +M +I  I+   
Sbjct: 267 ALIYLPSELIVRPYLVAARSSIHPLLVMLSFLGGAMVAGIGGFFLAPAVMGVIVGIYQVR 326

Query: 343 KESIMAIKENKE 354
           +E  +A KE + 
Sbjct: 327 REQSLAAKETQN 338


>gi|57238407|ref|YP_179538.1| hypothetical protein CJE1555 [Campylobacter jejuni RM1221]
 gi|148926718|ref|ZP_01810398.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni CG8486]
 gi|57167211|gb|AAW35990.1| membrane protein, putative [Campylobacter jejuni RM1221]
 gi|145845082|gb|EDK22178.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni CG8486]
 gi|315058837|gb|ADT73166.1| Acid membrane antigen A [Campylobacter jejuni subsp. jejuni S3]
          Length = 347

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 128/296 (43%), Gaps = 42/296 (14%)

Query: 61  FLAVIATVSVMC-LFIVPLLFLFYYGMLEMKELVSK--VVLANQHGIPVPRWLSDIPGGM 117
           FLA I T + M  LF  P    F Y M+E+ + +    + L  Q    V  +   +P   
Sbjct: 56  FLASILTTACMVLLFFAP----FVYAMIELAKALKNFDINLVTQTLDYVKNYQFTLPESF 111

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIAL 174
              E   K       L  +S+  L          +AS F   G  FL     I  ++I +
Sbjct: 112 NFLEPKIKEFLASIDLNSISKQIL---------SYASSFTKSGAKFL-----IDMVLICV 157

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGS 231
           F+F+ + +    +L    + + P   K++  +   V  V+      M I+AI +G + G 
Sbjct: 158 FYFFANLY--GTELVIYLKSIIPIDKKELDDVLSEVGNVMAVVLYSMVIVAIFQGALFGL 215

Query: 232 AYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
                G    + +GVI A+ ++IP  GGA I +  VS+Y     N+ +A  +F++  I +
Sbjct: 216 ITIFYGYDG-ILMGVIFAVSSLIPAIGGALI-YVPVSLYEFASNNLNSALVIFIYSVIVI 273

Query: 290 -FIVDKTLRPF--------LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            FI D  ++P         LV  P K+  L  F  ++ G+ T G  G+ +GP ++ 
Sbjct: 274 SFIADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFGFWGIILGPAILT 329


>gi|290509047|ref|ZP_06548418.1| inner membrane protein [Klebsiella sp. 1_1_55]
 gi|289778441|gb|EFD86438.1| inner membrane protein [Klebsiella sp. 1_1_55]
          Length = 370

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 67/129 (51%), Gaps = 1/129 (0%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           + +R+  LG+ + A+ + ++ G    ++GVP    L V+     ++  G  +      I+
Sbjct: 209 QAVRAVALGVVVTALTQAVLGGIGLAISGVPYAALLTVVMIFTCLVQLGPLLVLVPSIIW 268

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L   G+    T L +W  + +  +D  +RP L+     LP +    G++GG+   G++GL
Sbjct: 269 LYWSGDTTWGTVLLVWSCV-VGTMDNVIRPVLIRMGADLPMILILTGVIGGLIAFGMIGL 327

Query: 329 FIGPVLMAL 337
           FIGPVL+A+
Sbjct: 328 FIGPVLLAV 336


>gi|189462559|ref|ZP_03011344.1| hypothetical protein BACCOP_03249 [Bacteroides coprocola DSM 17136]
 gi|189430720|gb|EDU99704.1| hypothetical protein BACCOP_03249 [Bacteroides coprocola DSM 17136]
          Length = 338

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 100/223 (44%), Gaps = 18/223 (8%)

Query: 124 TKHLSHP--QSLKILSE----TFLKTNGIDFIPRFASRFGMIFL----DYCLSIIFMIIA 173
           T+ +  P  Q + I+ E      L    + F+   AS  G   +    D  +++   I+ 
Sbjct: 92  TQAIIQPAHQVIDIIEERTGFDLLSEKSLSFMVVQASSIGQKIMTGVSDLIVNLAVAIML 151

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV---IRSTFLGMTIIAIGEGLVLG 230
           +FF   +G    ++++     + P        ++ K+   +RS  +G+ ++A+ +G++  
Sbjct: 152 MFFMLWEG----RKMEHYVSTIMPFEESNKREVLNKIQLMVRSNAIGIPLLAVIQGIISL 207

Query: 231 SAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
             Y L   P+     ++TA  ++IP  G  + +  VSIY LI G   NA  L  +G I +
Sbjct: 208 GGYLLCDAPNPYLTALLTAFASIIPLVGTALIWIPVSIYFLIMGEWINALILLGYGGIII 267

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
              D  +R  L      +  L T FG+V G+   G +G+  GP
Sbjct: 268 SQCDNLIRFLLQKKMANIHPLITIFGVVAGLPIFGFMGIIFGP 310


>gi|307131465|ref|YP_003883481.1| putative inner membrane protein [Dickeya dadantii 3937]
 gi|306528994|gb|ADM98924.1| predicted inner membrane protein [Dickeya dadantii 3937]
          Length = 367

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 10/156 (6%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           + IR+  LG+ + AI + ++ G    LAG+P    L V+  +  +   G         I+
Sbjct: 212 QAIRAVALGVVVTAIVQSVLGGIGLALAGIPYTTLLTVLMFLSCVAQIGPLTVLIPAIIW 271

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L   G+    T L +W  + +  +D  +RP L+     LP L    G++GG+   G++GL
Sbjct: 272 LYWSGDTTWGTILLIWSCV-VGTLDNIIRPLLIRMGADLPMLLILSGVIGGLLAFGMIGL 330

Query: 329 FIGPVLMA----LIAVIWKES-----IMAIKENKEK 355
           FIGPV++A    L++   KES     I  I  + +K
Sbjct: 331 FIGPVVLAVSYRLLSAWMKESPEPPPIRTISHHHKK 366


>gi|303243971|ref|ZP_07330310.1| protein of unknown function UPF0118 [Methanothermococcus
           okinawensis IH1]
 gi|302485623|gb|EFL48548.1| protein of unknown function UPF0118 [Methanothermococcus
           okinawensis IH1]
          Length = 343

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 77/358 (21%), Positives = 157/358 (43%), Gaps = 38/358 (10%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +M+  ++ + L  +Y    F   +  +    +   PIY     K    +T  A+I  ++ 
Sbjct: 9   LMKIFVLGVFLAIVYMTYPFLDTLALSCAFAYMGKPIYDKL--KPHTGNTLAAIICLLA- 65

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLAN---QHGIPVPRW------LSDIPGGMWASE 121
              FI+P + + Y  + E+   + ++ + +   Q    V R       +S I G  W  +
Sbjct: 66  ---FIIPTVIVGYIVLKELLIFLQQINIQSLNLQSMDTVERLNNLLYKVSSIFGYSWQVD 122

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
             T      Q L  L E ++K +             MI  +  +  + ++   ++F +DG
Sbjct: 123 EQTLSNYISQILSYL-EPYIKNSLAQL---------MILPEIAIKTMIVLFMTYYFLKDG 172

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKV---IRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
             + + + +    +   Y++K    +  +    ++ F+G  + +I  G++ G  Y++ G+
Sbjct: 173 HVVKKAILA---QVPDKYYEKTELFLNNLNESYKNLFIGNALTSIAIGVISGIGYYIIGI 229

Query: 239 PSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKT 295
           P+   L VIT + A++P  GG  + +  +SIY L+ G I     L L+G I L  + D  
Sbjct: 230 PNAFILAVITGVFALLPIIGGWTV-YIPLSIYYLMTGEIVKGIELLLFGWIFLSTLPDFV 288

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +RP +V     +         + G  T+GL G  +GP+++     +W+   + ++E+K
Sbjct: 289 IRPLIVKKESDVHPSLILIAFLIGPLTLGLGGFAMGPLIVGAFDALWR---VKLRESK 343


>gi|86149982|ref|ZP_01068210.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|86152766|ref|ZP_01070971.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|88596022|ref|ZP_01099259.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|121612486|ref|YP_001001021.1| hypothetical protein CJJ81176_1365 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167005924|ref|ZP_02271682.1| hypothetical protein Cjejjejuni_07165 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|218562972|ref|YP_002344751.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|85839428|gb|EAQ56689.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|85843651|gb|EAQ60861.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87249909|gb|EAQ72868.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|88190863|gb|EAQ94835.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112360678|emb|CAL35475.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|284926583|gb|ADC28935.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315929282|gb|EFV08495.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           305]
          Length = 347

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 128/296 (43%), Gaps = 42/296 (14%)

Query: 61  FLAVIATVSVMC-LFIVPLLFLFYYGMLEMKELVSK--VVLANQHGIPVPRWLSDIPGGM 117
           FLA I T + M  LF  P    F Y M+E+ + +    + L  Q    V  +   +P   
Sbjct: 56  FLASILTTTCMVLLFFAP----FVYAMIELAKALKNFDINLVTQTLDYVKNYQFTLPESF 111

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIAL 174
              E   K       L  +S+  L          +AS F   G  FL     I  ++I +
Sbjct: 112 NFLEPKIKEFLASIDLNSISKQIL---------SYASSFTKSGAKFL-----IDMVLICV 157

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGS 231
           F+F+ + +    +L    + + P   K++  +   V  V+      M I+AI +G + G 
Sbjct: 158 FYFFANLY--GTELVIYLKSIIPIDKKELDDVLSEVGNVMAVVLYSMVIVAIFQGALFGL 215

Query: 232 AYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
                G    + +GVI A+ ++IP  GGA I +  VS+Y     N+ +A  +F++  I +
Sbjct: 216 ITIFYGYDG-ILMGVIFAVSSLIPAIGGALI-YMPVSLYEFASNNLNSALVIFIYSVIVI 273

Query: 290 -FIVDKTLRPF--------LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            FI D  ++P         LV  P K+  L  F  ++ G+ T G  G+ +GP ++ 
Sbjct: 274 SFIADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFGFWGIILGPAILT 329


>gi|307626825|gb|ADN71129.1| putative inner membrane protein [Escherichia coli UM146]
          Length = 201

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 79/163 (48%), Gaps = 3/163 (1%)

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
             Y  G  ++Q +      L          +  + IR+  LG+ + A+ + ++ G    +
Sbjct: 7   LLYWRGEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAV 66

Query: 236 AGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           +GVP    L V+  +  ++  G  P+   A+ I+L   G+    T L +W  + +  +D 
Sbjct: 67  SGVPYATLLTVLMILSCLVQLGPLPVLIPAI-IWLYWTGDTTWGTVLLVWSGV-VGTLDN 124

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
            +RP L+     LP +    G++GG+   G++GLFIGPVL+A+
Sbjct: 125 VIRPMLIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAV 167


>gi|183598849|ref|ZP_02960342.1| hypothetical protein PROSTU_02280 [Providencia stuartii ATCC 25827]
 gi|188021055|gb|EDU59095.1| hypothetical protein PROSTU_02280 [Providencia stuartii ATCC 25827]
          Length = 371

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 130/314 (41%), Gaps = 16/314 (5%)

Query: 34  VLSALIIGF--------TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           VL+  I+GF         +WP+     ++        A++    ++ LF++PL  L    
Sbjct: 30  VLNPFILGFVWAGMMVIATWPLLLRLEARLWNKRWLAALVMVSLILLLFVIPLGILIGSI 89

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHL-SHPQSLKILSETFLKT 143
           +     L+      N   +P   WL+ +P  G      W   + S   +L    + +L  
Sbjct: 90  IQNSTPLIELAKSPNSLRLPDLEWLNSVPFVGEKIYYAWHSLVASGGNALLAKVQPYLGQ 149

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
               F+ + A   G       L ++F        Y  G S+   +      L        
Sbjct: 150 AAGWFLAQ-AINAGRFMFHLALMLLFS----GLLYLKGESVMLGIRHFAVRLAGIRGDAA 204

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
             +  + IR+  LG+ + A+ + +V G    L+G+     L V+  I  +   G  +   
Sbjct: 205 VVLAAQSIRAVALGVVVTALIQAIVGGVGLALSGISYAAILTVLLFICCVAQLGPLLIMV 264

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
              I+L   G+   A  L +W A+ +  +D  LRP+L+     LP +    G++GG+ + 
Sbjct: 265 PSVIWLFWTGDTTWAIILAVWAAV-VATMDGVLRPWLIKMGADLPMVLILVGVIGGILSF 323

Query: 324 GLLGLFIGPVLMAL 337
           G++GLFIGPV++A+
Sbjct: 324 GMIGLFIGPVVLAV 337


>gi|242279199|ref|YP_002991328.1| hypothetical protein Desal_1727 [Desulfovibrio salexigens DSM 2638]
 gi|242122093|gb|ACS79789.1| protein of unknown function UPF0118 [Desulfovibrio salexigens DSM
           2638]
          Length = 365

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 72/134 (53%), Gaps = 2/134 (1%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSI 267
           KV +S   G   IA  +G+V G    +AG+P+ +  G + +  ++IP  G  + +   +I
Sbjct: 217 KVSKSVLFGSLFIAFLQGIVGGIGLAIAGIPA-LFWGTMMSFASLIPVLGTGLIWVPATI 275

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           YLLI G +  A  L +W  + +  +D  LRP +V    ++  +  F  ++GG+   G LG
Sbjct: 276 YLLIVGKLKIAVFLLIWCGVLVTGIDTVLRPMIVREASRVSTIYVFLAILGGINAFGPLG 335

Query: 328 LFIGPVLMALIAVI 341
           +  GP++++ + V+
Sbjct: 336 ILYGPLILSFLMVM 349


>gi|206576471|ref|YP_002237996.1| inner membrane protein YdiK [Klebsiella pneumoniae 342]
 gi|288934905|ref|YP_003438964.1| hypothetical protein Kvar_2032 [Klebsiella variicola At-22]
 gi|206565529|gb|ACI07305.1| inner membrane protein YdiK [Klebsiella pneumoniae 342]
 gi|288889614|gb|ADC57932.1| protein of unknown function UPF0118 [Klebsiella variicola At-22]
          Length = 370

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 67/129 (51%), Gaps = 1/129 (0%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           + +R+  LG+ + A+ + ++ G    ++GVP    L V+     ++  G  +      I+
Sbjct: 209 QAVRAVALGVVVTALTQAVLGGIGLAISGVPYAALLTVVMIFTCLVQLGPLLVLVPSIIW 268

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L   G+    T L +W  + +  +D  +RP L+     LP +    G++GG+   G++GL
Sbjct: 269 LYWSGDTTWGTVLLVWSCV-VGTMDNVIRPVLIRMGADLPMILILTGVIGGLIAFGMIGL 327

Query: 329 FIGPVLMAL 337
           FIGPVL+A+
Sbjct: 328 FIGPVLLAV 336


>gi|251789301|ref|YP_003004022.1| putative inner membrane protein [Dickeya zeae Ech1591]
 gi|247537922|gb|ACT06543.1| protein of unknown function UPF0118 [Dickeya zeae Ech1591]
          Length = 370

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 1/129 (0%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           + IR+  LG+ + AI + ++ G    LAG+P    L V+  +  +   G         I+
Sbjct: 211 QAIRAVALGVVVTAIVQSVLGGIGLALAGIPYTTLLTVLMFLSCVAQLGPLTVLIPAIIW 270

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L   G+    T L +W  + +  +D  +RP L+     LP L    G++GG+   G++GL
Sbjct: 271 LYWSGDTTWGTILLIWSCV-VGTLDNIIRPLLIRMGADLPMLLILSGVIGGLLAFGMIGL 329

Query: 329 FIGPVLMAL 337
           FIGPV++A+
Sbjct: 330 FIGPVVLAV 338


>gi|310819626|ref|YP_003951984.1| hypothetical protein STAUR_2353 [Stigmatella aurantiaca DW4/3-1]
 gi|309392698|gb|ADO70157.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 363

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 20/185 (10%)

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLG--------EHLFPAYWKKISRIVPKVIRS 213
            +      M+IA FFF  DG  + + ++S+         E L       I+ +V  V+ +
Sbjct: 161 SFAFQTTMMLIAFFFFLVDGKRLVEWIESVAPLKQGQTIEILLEFRHVSIAVLVSSVVTA 220

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLI 271
              G+  +A   G      Y +  VP       +T  +A+IP  G A + F A ++ LLI
Sbjct: 221 ---GVQAVAALVG------YLITQVPVPFFFAAVTFFLALIPAIGAAVVCFVA-ALLLLI 270

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
            G+ + A  L +WG + + +VD  ++P L    + +     FF L+GG+ + G +GL +G
Sbjct: 271 TGHPWAALFLAIWGVVVVGLVDNIVKPLLAKRGMDMHGAIIFFALLGGLASFGTVGLLLG 330

Query: 332 PVLMA 336
           P+++A
Sbjct: 331 PLIVA 335


>gi|29346881|ref|NP_810384.1| hypothetical protein BT_1471 [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29338779|gb|AAO76578.1| putative transmembrane protein [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 341

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 95/201 (47%), Gaps = 14/201 (6%)

Query: 141 LKTNGIDFIPRFASRFGMIFLD----YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           L  + + FI     R G I ++      +++  M+  L+F    G    +++++    + 
Sbjct: 119 LGKDTLSFIVSILPRIGQIIMESISSLAINLFVMVFVLYFMLIGG----KKMEAYVNDIL 174

Query: 197 P---AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           P   A  +++   +  ++RS  +G+ ++AI +G V    Y + G P+ + LG +T    +
Sbjct: 175 PFNEANTQEVIHEINMIVRSNAIGIPLLAIIQGGVAMIGYLIFGAPNVLVLGFLTCFATI 234

Query: 254 IP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           IP  G A I F  V+ YL + G+ FNA  L  +G I +   D  +R  L         L 
Sbjct: 235 IPMVGTALIWF-PVAAYLAVTGDWFNAIGLAAYGGIVISQSDNLIRFILQKKMADTHPLI 293

Query: 312 TFFGLVGGVRTMGLLGLFIGP 332
           T FG+V G+   G +G+  GP
Sbjct: 294 TIFGVVIGLPLFGFMGVIFGP 314


>gi|323962179|gb|EGB57774.1| ydiK protein [Escherichia coli H489]
          Length = 370

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 69/324 (21%), Positives = 147/324 (45%), Gaps = 15/324 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +FI+P+
Sbjct: 23  MIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMVFIIPI 82

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT--KHLSHPQSLKIL 136
             L    +++    + K + +    +P   WL+ IP  +  ++L+    +L       I+
Sbjct: 83  -ALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIP--VIGAKLYAGWHNLLDMGGTAIM 139

Query: 137 SET--FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           ++   ++ T    F+ + A+  G  F+ +C     M++     Y  G  ++  +      
Sbjct: 140 AKVRPYIGTTTTWFVGQ-AAHIGR-FMVHC---ALMLLFSALLYWRGEQVALGIRHFATR 194

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  ++
Sbjct: 195 LAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSCLV 254

Query: 255 P-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
             G  P+   A+ I+L   G+    T L +W  + +  +D  +RP L+     LP +   
Sbjct: 255 QLGPLPVLIPAI-IWLYWTGDTTWGTVLLVWSGV-VGTLDNVIRPMLIRMGADLPLILIL 312

Query: 314 FGLVGGVRTMGLLGLFIGPVLMAL 337
            G++GG+   G++GLFIGPVL+A+
Sbjct: 313 SGVIGGLIAFGMIGLFIGPVLLAV 336


>gi|152970708|ref|YP_001335817.1| putative inner membrane protein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238895213|ref|YP_002919948.1| putative inner membrane protein [Klebsiella pneumoniae NTUH-K2044]
 gi|329999400|ref|ZP_08303408.1| hypothetical protein HMPREF9538_01066 [Klebsiella sp. MS 92-3]
 gi|150955557|gb|ABR77587.1| putative transport protein [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238547530|dbj|BAH63881.1| putative transport protein [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|328538324|gb|EGF64461.1| hypothetical protein HMPREF9538_01066 [Klebsiella sp. MS 92-3]
          Length = 370

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 67/129 (51%), Gaps = 1/129 (0%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           + +R+  LG+ + A+ + ++ G    ++GVP    L V+     ++  G  +      I+
Sbjct: 209 QAVRAVALGVVVTALTQAVLGGIGLAVSGVPYAALLTVVMIFTCLVQLGPLLVLVPSIIW 268

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L   G+    T L +W  + +  +D  +RP L+     LP +    G++GG+   G++GL
Sbjct: 269 LYWSGDTTWGTVLLVWSCV-VGTMDNVIRPVLIRMGADLPMILILTGVIGGLIAFGMIGL 327

Query: 329 FIGPVLMAL 337
           FIGPVL+A+
Sbjct: 328 FIGPVLLAV 336


>gi|298209214|ref|YP_003717393.1| putative transmembrane protein [Croceibacter atlanticus HTCC2559]
 gi|83849141|gb|EAP87010.1| putative transmembrane protein [Croceibacter atlanticus HTCC2559]
          Length = 339

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 90/175 (51%), Gaps = 3/175 (1%)

Query: 185 SQQLDSLGEHLFPAYWKKI--SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           SQ  ++L E++   +   I   +    ++R+  +G+ ++AI +G++    + + GVP   
Sbjct: 165 SQLREALDEYIPIGHDNLILIGKESSDLVRANAIGIPLVAICQGIIALIGFLIFGVPDPF 224

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
              VIT I +MIP  G  I    V+I L  +G  + A  +F++G + +   D  +R +++
Sbjct: 225 FWFVITTIGSMIPFIGTAIGIIPVTILLYAQGMHWQAIAIFIYGMVVVGATDNFIRLYML 284

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
                +  L T FG+V GV   G +GL  GP+L++L  +I K       +N+ ++
Sbjct: 285 QKLSNVHPLITLFGVVVGVPLFGFIGLIFGPLLISLFLLIVKIYKNEYGKNEARL 339


>gi|329957164|ref|ZP_08297731.1| hypothetical protein HMPREF9445_02607 [Bacteroides clarus YIT
           12056]
 gi|328523432|gb|EGF50531.1| hypothetical protein HMPREF9445_02607 [Bacteroides clarus YIT
           12056]
          Length = 336

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 92/191 (48%), Gaps = 8/191 (4%)

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP---AYWKK 202
           I  +PR           + +++  ++  L+F    G    ++++     L P   A  + 
Sbjct: 128 ISSLPRIGQTLMGGISSFAVNMFVLVFVLYFMLMGG----KKMERYVNELLPFNEANTQD 183

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPIS 261
           +   +  ++RS  +G+ ++AI +G V    YW+ G P+ +  G +T   +++P  G  + 
Sbjct: 184 VVHEINMIVRSNAIGIPLLAIIQGGVAMIGYWIFGAPNILFSGFLTGFASVVPMVGTALI 243

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +  ++IY+ + GN F A  L ++GA+ +  +D  +R  +      +  L T FG+V G+ 
Sbjct: 244 WVPIAIYMALIGNWFQAIGLAIFGALVISQLDNLIRFIIQKKMADIHPLITIFGVVIGLS 303

Query: 322 TMGLLGLFIGP 332
             G +G+  GP
Sbjct: 304 LFGFMGVIFGP 314


>gi|312137386|ref|YP_004004723.1| hypothetical protein Mfer_1175 [Methanothermus fervidus DSM 2088]
 gi|311225105|gb|ADP77961.1| protein of unknown function UPF0118 [Methanothermus fervidus DSM
           2088]
          Length = 325

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 4/176 (2%)

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           I++ F+  RDG  + Q + S+        + K+ R +   IR+ F G  + A+  G+   
Sbjct: 146 IMSTFYLARDGTKLIQYIRSILPKNKVKLFNKMLREIEVTIRAIFYGHFLAALIVGIFAT 205

Query: 231 SAYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
            AY++ G P    LGVIT    +IP  G  P+ + ++ IY +I GN+     + ++G   
Sbjct: 206 MAYYILGYPFPAILGVITMFTTVIPVIGPWPV-YLSLGIYDIIHGNVIRGVAIIVFGK-S 263

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L  +D  LR  L G   ++  +    G +GG    G+ G  +GP+++     I K 
Sbjct: 264 LGFLDVYLRTELGGKYAEIHPMLFLVGFIGGPMIWGIAGFILGPLILCTTHTIIKT 319


>gi|254877432|ref|ZP_05250142.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843453|gb|EET21867.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 339

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 130/292 (44%), Gaps = 34/292 (11%)

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
           +  S+FL V+  +  +C+FI P+L + YY + E+   +      +Q    +   +  IP 
Sbjct: 53  KHRSSFLLVMGIL--LCVFI-PILIVLYYAISEIVSYLQHPETLSQTFATLGDSIGKIP- 108

Query: 116 GMWASELWTKHLSH-PQSLKILSETFLKTNGIDFIP--RFASRFGMIFLDYCLSIIFMII 172
             +   +  +HL    +++   S+T +   G   +P  R+     + F+   L      I
Sbjct: 109 --YIGSILQEHLDKLIKAINDDSDTIISNLG-QILPKVRYVGSTSISFITDFL------I 159

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI---RSTFLGMTIIAIGEGLVL 229
            L   Y+   S S  L+   + +    +      +   I   R   L + + A   G V+
Sbjct: 160 TLLLVYQFLVS-SSTLEKFAKKVVLKDFDDSDSFISTAIITTRRVSLAIFLTASLVGTVM 218

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIF------NATCLFL 283
              + L G+P+ + L    AI +MIP      F    +Y+LI  ++F       A  + +
Sbjct: 219 AITFLLTGMPTPILLAFTVAIASMIP------FMVGIVYILIGASVFVVYGATKAIIILV 272

Query: 284 WG-AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
            G A+ +F  D  ++P ++   ++L F  +  G++GG++  G +G+F+GPV+
Sbjct: 273 VGFALNIF-TDNIMQPKIINKQVQLSFAASLIGILGGIQAFGFIGIFLGPVI 323


>gi|157370415|ref|YP_001478404.1| hypothetical protein Spro_2175 [Serratia proteamaculans 568]
 gi|157322179|gb|ABV41276.1| protein of unknown function UPF0118 [Serratia proteamaculans 568]
          Length = 366

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 67/129 (51%), Gaps = 1/129 (0%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           + IR+  LG+ + A+ + ++ G    + G+P+   L V+  I  +   G  +      I+
Sbjct: 210 QAIRAVALGVVVTALVQSVLGGIGLAVTGIPAATLLTVLIFICCVAQLGPLLVLVPAIIW 269

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L   G+    T L +W  + +  +D  LRP L+     LP +    G++GG+   G++GL
Sbjct: 270 LYWSGDTTWGTVLLVWSCV-VATLDNVLRPVLIRMGADLPMILILSGVIGGLLAFGMIGL 328

Query: 329 FIGPVLMAL 337
           FIGPV++A+
Sbjct: 329 FIGPVVLAV 337


>gi|53802621|ref|YP_112659.1| hypothetical protein MCA0120 [Methylococcus capsulatus str. Bath]
 gi|53756382|gb|AAU90673.1| putative membrane protein [Methylococcus capsulatus str. Bath]
          Length = 370

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 147/325 (45%), Gaps = 7/325 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I F+++      K F   +L ++I+     P+++S   +  +     A +  ++++   
Sbjct: 19  LIGFLVIYCYQIFKPFIGLMLWSVILAVAFHPMHASLARRMGDKQGRAATVLVLAILLCV 78

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIPG-GMWASELWTKHLSHPQS 132
           +VP   L         +LV +V   +   +P PR ++++ P  G     LW+       S
Sbjct: 79  LVPTALLAVSFADSATDLVRQVRDGSLK-VPAPRAFVAEWPLLGDKLYALWSAAHEDIGS 137

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           +    E  ++T   + +  +A+  G   L + +S++   + + +    G + ++ + +  
Sbjct: 138 VAARFEPKIRTVTKEILG-YAASAGSAVLKFMVSLVLAGVWMAY-ASSGHAAARAIAN-- 193

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
               P     + R+    IR+   G+  IA  + L+LG+ + L GVP+   L ++  ++ 
Sbjct: 194 RMAGPGQGDALVRLSTTTIRAVAQGVIGIACIQALLLGAGFILVGVPAAGVLALLVLLLG 253

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++   A +      IY+ +  +      +F    I    VD  L+PF++G  +  P    
Sbjct: 254 IMQVPALLISLPTVIYVFMTDDSTIVAIMFAIYTIVAGSVDNILKPFMLGRGVDAPMPVI 313

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMAL 337
             G +GG+ T G++GLF+G V++AL
Sbjct: 314 LLGALGGMATGGIIGLFLGSVMLAL 338


>gi|296169971|ref|ZP_06851578.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295895375|gb|EFG75081.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 381

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 150/361 (41%), Gaps = 51/361 (14%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E  LN +  +  +    +L + YFL+G+F  ++ A +  +   P+++ F        T L
Sbjct: 4   EFTLNQKRALAILTAIALLFAAYFLRGYFVLIVVAAVGAYLFTPLFNWF---GRRLGTGL 60

Query: 63  AVIATVSVMC---LFIVPLLFLFYYGMLEMKELVSKVV----------LANQHGIPVPRW 109
           A  AT +++C   + IVP+  L    ++++  +V  +           L ++    V   
Sbjct: 61  A--ATCTLLCALVIVIVPVTLLVILAIVQISRMVDSITEWVKSTDLSGLGDRTLHAVNEL 118

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL---- 165
           LS +P             +H   + I ++   K   +  + R    + + FL   +    
Sbjct: 119 LSRVP------------FAH---MTITTDNLRKA--MVTVGRNVGEWALHFLQGAVGGLA 161

Query: 166 -----SIIFM--IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
                +IIF+   +AL         +   L+ LG+ +   Y  K   +V    R T  G 
Sbjct: 162 GAITSAIIFLYVFVALLVHRERVRKLIADLNPLGDEVTDLYLAKAGAMV----RGTVNGQ 217

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVAL-GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFN 277
            +IA+ +G+   ++ ++AG      +  V+   +++IP G  I      I ++  GNI  
Sbjct: 218 FVIALCQGVAGAASIYVAGFHHGFFIFAVLLTALSIIPLGGGIVTIPFGIGMIFYGNIAG 277

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
              + LW  + +  +D  LRP LV    +L        +  G+   G  G+ IGPVLM L
Sbjct: 278 GAFVVLWHLVVVTNIDNFLRPILVPRDARLNPALMLLSVFSGIAMFGPWGIVIGPVLMIL 337

Query: 338 I 338
           I
Sbjct: 338 I 338


>gi|168699365|ref|ZP_02731642.1| hypothetical protein GobsU_07587 [Gemmata obscuriglobus UQM 2246]
          Length = 384

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/318 (21%), Positives = 135/318 (42%), Gaps = 23/318 (7%)

Query: 31  FAPVLS-ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F P L+  + +   +WP+ SS++ +   + T  AV+A+  V+ L  VP     Y      
Sbjct: 58  FLPALTWGVALAIIAWPL-SSWLRRVTANRTCAAVVASAVVILLVAVPS---GYVAQQVA 113

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           +E+ S    A Q  +        +   M A+ +    ++  +  ++  E   K    +++
Sbjct: 114 REVSSSTEQAQQEAVQ-----GTLRERMLATPVLRDAVAWAERPEVNLEAEAKKAAREYL 168

Query: 150 PR--FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
               + +R  + FL   L +   I  L++  RDG     Q       L P   ++  R+ 
Sbjct: 169 GNGMWLARGSVAFL---LQLAIAIYILYYSLRDG----DQFLRAARRLLPVTPEEADRVF 221

Query: 208 PKV---IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
            +    + +      + +   G+     +W  G+P+ +  GV+  +++M+P  G  + + 
Sbjct: 222 DRAGGSVHANLYASLVTSAINGVNAALLFWATGLPAPILWGVVVFVVSMLPVAGIFLIWV 281

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             + YL +  +   A  L  WG     +VD  L  +L GG ++L  +P     +GG+   
Sbjct: 282 PAAAYLALTDHWGGAVALVAWGVGSSVLVDTLLYTWLAGGRMRLHPVPALLSFIGGLALF 341

Query: 324 GLLGLFIGPVLMALIAVI 341
           G  G+ +GP ++A+   +
Sbjct: 342 GASGIVLGPAILAVTVAV 359


>gi|126658239|ref|ZP_01729389.1| hypothetical protein CY0110_12607 [Cyanothece sp. CCY0110]
 gi|126620388|gb|EAZ91107.1| hypothetical protein CY0110_12607 [Cyanothece sp. CCY0110]
          Length = 378

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/314 (20%), Positives = 141/314 (44%), Gaps = 9/314 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            ++ F   +L  +I+    +P++    ++         V+  +  + + + P+ F+    
Sbjct: 45  LIRPFLGILLWGIILAIAVFPVFVWLKNRLGGRRKLAGVLLILLGIAVIVGPVSFVATLF 104

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQSLKILSETFLKTN 144
           +   +     +V  N    P P  + ++P  G +   +WT   ++  S+    +  L+  
Sbjct: 105 VGNAQTFADNIVSGNLKVPPPPEGIENLPIIGNYVDHIWTSASNNLISVLSKFQPQLEEL 164

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
             + +  FA    ++ L + LSII   I       +   +++++  +   + P   +   
Sbjct: 165 AKNVL-FFAGNMSLVLLKFILSIIVAGI----LTINSKQLNRKIKRVFIRITPQQGEDFL 219

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
           ++    IR    G+  +++ + L++G    +AG+P    L V++ ++ ++  G  P+ F 
Sbjct: 220 QLATATIRGVTRGIIGVSLIQSLLVGIGLMVAGMPLSGLLTVLSLVLCILQIGLGPVVFP 279

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
           ++ I+         A  L +W  I   ++D  L+P  +   + +P L  F G++GG    
Sbjct: 280 SI-IFAWYTMGTLKALLLTIW-LIFCTLIDNILKPIFMSQGVSVPILIIFIGVLGGSLLH 337

Query: 324 GLLGLFIGPVLMAL 337
           G+LGLFIGPV+++L
Sbjct: 338 GILGLFIGPVVLSL 351


>gi|241668900|ref|ZP_04756478.1| hypothetical protein FphipA2_09034 [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 320

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 130/292 (44%), Gaps = 34/292 (11%)

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
           +  S+FL V+  +  +C+FI P+L + YY + E+   +      +Q    +   +  IP 
Sbjct: 34  KHRSSFLLVMGIL--LCVFI-PILIVLYYAISEIVSYLQHPETLSQTFATLGDSIGKIP- 89

Query: 116 GMWASELWTKHLSH-PQSLKILSETFLKTNGIDFIP--RFASRFGMIFLDYCLSIIFMII 172
             +   +  +HL    +++   S+T +   G   +P  R+     + F+   L      I
Sbjct: 90  --YIGSILQEHLDKLIKAINDDSDTIISNLG-QILPKVRYVGSTSISFITDFL------I 140

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI---RSTFLGMTIIAIGEGLVL 229
            L   Y+   S S  L+   + +    +      +   I   R   L + + A   G V+
Sbjct: 141 TLLLVYQFLVS-SSTLEKFAKKVVLKDFDDSDSFISTAIITTRRVSLAIFLTASLVGTVM 199

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIF------NATCLFL 283
              + L G+P+ + L    AI +MIP      F    +Y+LI  ++F       A  + +
Sbjct: 200 AITFLLTGMPTPILLAFTVAIASMIP------FMVGIVYILIGASVFVVYGATKAIIILV 253

Query: 284 WG-AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
            G A+ +F  D  ++P ++   ++L F  +  G++GG++  G +G+F+GPV+
Sbjct: 254 VGFALNIF-TDNIMQPKIINKQVQLSFAASLIGILGGIQAFGFIGIFLGPVI 304


>gi|332176654|gb|AEE12344.1| protein of unknown function UPF0118 [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 429

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 104/237 (43%), Gaps = 35/237 (14%)

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGM---------IFLDYCLSII----------- 168
            P+SL +L+     T   D + +   RFG+             +  S++           
Sbjct: 133 DPESLNVLT-----TQAQDVVKQVEERFGIELWSNENIQKLTSFSTSLVKGLLQGMSSFF 187

Query: 169 ---FMIIALFFFYRDGFSISQQLDSLGEHLFP---AYWKKISRIVPKVIRSTFLGMTIIA 222
              F+I+ L +F   G+    Q ++  E L P      K +S     +++S  +G+ ++A
Sbjct: 188 LNAFIILFLLYFMLRGYD---QFEAAVEELLPFTECNKKTVSNETISIVKSNAIGIPLLA 244

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCL 281
           I +G+     Y + GV + +   V+T    +IP  G  + +  +++ + I G+  NA  L
Sbjct: 245 IVQGVFAYIGYLIFGVDNALLFAVLTTFTTIIPVLGTMLVWIPIAVVMGINGDWLNAILL 304

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
            L+G I +  VD   R  L      +  L T FG+  G+   G  G+  GP++++LI
Sbjct: 305 ALYGFIVIGGVDNVARLLLQKQMANIHPLITIFGVFIGLSLFGFWGVIFGPLILSLI 361


>gi|253572345|ref|ZP_04849748.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Bacteroides
           sp. 1_1_6]
 gi|251838120|gb|EES66208.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Bacteroides
           sp. 1_1_6]
          Length = 235

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 97/210 (46%), Gaps = 14/210 (6%)

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLD----YCLSIIFMIIALFFFYRDGFSISQQ 187
           S K      L  + + FI     R G I ++      +++  M+  L+F    G    ++
Sbjct: 4   SKKKRGNDVLGKDTLSFIVSILPRIGQIIMESISSLAINLFVMVFVLYFMLIGG----KK 59

Query: 188 LDSLGEHLFP---AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           +++    + P   A  +++   +  ++RS  +G+ ++AI +G V    Y + G P+ + L
Sbjct: 60  MEAYVNDILPFNEANTQEVIHEINMIVRSNAIGIPLLAIIQGGVAMIGYLIFGAPNILVL 119

Query: 245 GVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           G +T    +IP  G A I F  V+ YL + G+ FNA  L  +G I +   D  +R  L  
Sbjct: 120 GFLTCFATIIPMVGTALIWF-PVAAYLAVTGDWFNAIGLAAYGGIVISQSDNLIRFILQK 178

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
                  L T FG+V G+   G +G+  GP
Sbjct: 179 KMADTHPLITIFGVVIGLPLFGFMGVIFGP 208


>gi|58039782|ref|YP_191746.1| putative permease [Gluconobacter oxydans 621H]
 gi|58002196|gb|AAW61090.1| Putative permease [Gluconobacter oxydans 621H]
          Length = 365

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 163/350 (46%), Gaps = 23/350 (6%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIY---SSFISKKEESSTFLAVIATVSVMCLFI 75
           I++ +++ LK F    + A+ I  T+WP+     +F+      +  L ++     M +FI
Sbjct: 25  IVISAIWILKPFLPATIWAVTIAVTTWPMLRRLQTFVGNSRRVAVSLTILIA---MLVFI 81

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTK--HLSHPQ 131
           +PL            ++++ V  ++   IP  P W+  +P  G   +  W +  H+  P+
Sbjct: 82  LPLWLAITTVSSHFGDIIALVSSSSTLHIPDEPPWMGRLPLVGPHIAPFWDRMQHMQFPE 141

Query: 132 SLKIL---SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
            ++ +    ET + T    F+  +A  F ++ L + L+++ + + L        +++   
Sbjct: 142 MVRQVIPAPETLIHT----FL-AYAGSFSILALQFILTLVILGV-LLMRAESAIAVA--- 192

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D+L   L     K++ ++    IR    G+T+ A+ E  V G    LAG P    L  +T
Sbjct: 193 DTLVTILAGNRGKEMLQLAAYTIRGVAFGVTVTAVVESAVAGIGLKLAGAPWVSILTAVT 252

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++ ++  G  ++     I++     +  A  L +   I   I+D  LRPFL+     +P
Sbjct: 253 FMVCLLQAGPGVTLIPAVIWVYFDRGLAPAALLLV-VTIITIIIDNVLRPFLIRKQADIP 311

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            +    G++GG+  +GL+G+FIGP+++++   + K  I   ++    +S+
Sbjct: 312 LILIMLGVIGGLGGLGLVGIFIGPLILSVAYTLTKSWISDSRQTPPSVST 361


>gi|157145970|ref|YP_001453289.1| putative inner membrane protein [Citrobacter koseri ATCC BAA-895]
 gi|157083175|gb|ABV12853.1| hypothetical protein CKO_01723 [Citrobacter koseri ATCC BAA-895]
          Length = 370

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 71/130 (54%), Gaps = 3/130 (2%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
           + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  ++  G  P+   A+ I
Sbjct: 209 QAIRAVALGVVVTALVQAILGGIGLAISGVPYATLLTVVMILSCLVQLGPLPVLIPAI-I 267

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +L   G+    T L +W  + +  +D  +RP L+     LP +    G++GG+   G++G
Sbjct: 268 WLYWTGDTTWGTVLLVWSCV-VGTLDNVIRPVLIRMGADLPLILILSGVIGGLIAFGMIG 326

Query: 328 LFIGPVLMAL 337
           LFIGPVL+A+
Sbjct: 327 LFIGPVLLAV 336


>gi|330903708|gb|EGH34280.1| hypothetical protein PSYJA_37244 [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 115

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 54/94 (57%)

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           LG++T + ++IP G P+ +   + +L+ +G    A  L +WG   +  VD  L+P+L+  
Sbjct: 5   LGILTFLFSLIPMGPPLVWLPATAWLVWQGEYGMAIFLGIWGMFIISGVDNVLKPYLISR 64

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
              LP +    G+ GG+   G +GLFIGP L+A+
Sbjct: 65  GGNLPLVIVLLGVFGGLLAFGFIGLFIGPTLLAV 98


>gi|326798185|ref|YP_004316004.1| hypothetical protein Sph21_0757 [Sphingobacterium sp. 21]
 gi|326548949|gb|ADZ77334.1| protein of unknown function UPF0118 [Sphingobacterium sp. 21]
          Length = 347

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 150/345 (43%), Gaps = 33/345 (9%)

Query: 24  LYFLKGFFAPVLSALIIG--FTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
           LY L+G F  +L+ +I+   F S  +Y +   K  +S +  AV+  ++   + + P    
Sbjct: 27  LYSLRGIFGALLATMIMYTIFRSLNLYLTEQLKWRKSIS--AVLIIIASFFIIVFP---- 80

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
            +YG++ M  +  +V+   +H   + R + +I      +      L  P          L
Sbjct: 81  -FYGLINM--IAKRVIELTKHPDKIQRVIDEI------NRFLGDKLQQPD---------L 122

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            TN +     +A       L    +I+  I  ++F     F   ++ +       P   +
Sbjct: 123 ITNNLQRGVAYAGNLMTSILSGAANILLDISVMYFLLYFLFVGCREFEKGVLRYSPFSDE 182

Query: 202 KISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-G 257
              R    +  +  S  LG  +IA+ +G  +   YW+      +  GVI  I++ IP  G
Sbjct: 183 NAIRFGVELRNITYSNVLGQGLIAVIQGGAVAFGYWMFDFADPLFWGVICVILSFIPVVG 242

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
           AP+ F    I   I G+ FNA  + LWG + +  +D  LR  +      +  + T  G++
Sbjct: 243 APMVFIPACIIKFIDGDTFNAIAMLLWGILLVSNIDNVLRLVIAKRVGDIHPIITIVGVI 302

Query: 318 GGVRTMGLLGLFIGPVLMA--LIAV-IWKESIMAIKENKEKISSN 359
            G+   G++GL  GP+L++  LI V I++ + +A    ++K + N
Sbjct: 303 IGIPMFGIMGLVFGPLLLSYFLITVKIYETNKLAEMRLRKKNNDN 347


>gi|261343992|ref|ZP_05971637.1| putative membrane protein [Providencia rustigianii DSM 4541]
 gi|282568383|gb|EFB73918.1| putative membrane protein [Providencia rustigianii DSM 4541]
          Length = 371

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 69/129 (53%), Gaps = 1/129 (0%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           + IR+  LG+ + A+ + +V G    L+G+     L V+  I  +   G  +      ++
Sbjct: 210 QSIRAVALGVVVTALVQAIVGGIGLALSGISYAAILTVLIFICCVAQIGPLLVMIPSVLW 269

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L   G+   A  L +W AI +  +D  LRP+L+     LP +    G++GG+ + G++GL
Sbjct: 270 LFWTGDTTWAIILGVWAAI-VATMDGVLRPWLIKMGADLPMVLILIGVIGGILSFGMIGL 328

Query: 329 FIGPVLMAL 337
           FIGPV++A+
Sbjct: 329 FIGPVVLAV 337


>gi|300709901|ref|YP_003735715.1| hypothetical protein HacjB3_02650 [Halalkalicoccus jeotgali B3]
 gi|299123584|gb|ADJ13923.1| hypothetical protein HacjB3_02650 [Halalkalicoccus jeotgali B3]
          Length = 381

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 93/177 (52%), Gaps = 9/177 (5%)

Query: 164 CLSIIFMIIALFFFYRDGFSIS---QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
            +S+   +  +F   RDG  +    Q +  + + +    + ++ R+    + ++ +G  I
Sbjct: 191 AISLTVTMFVVFGLLRDGDRLVAWFQTIVPISDEVKTELFGRLDRL----MWASVIGNVI 246

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
           ++  + ++LG  +W+  VP  + L V+T ++A++P  G   ++  V+IYLLI G    A 
Sbjct: 247 VSAIQAILLGIGFWVLEVPGAIFLTVVTFLLALLPLIGVFGTWIPVAIYLLIVGRPLAAL 306

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            +  +G I + + D  +RP ++G   +L       G+ GG+  +G +GLF+GPV++ 
Sbjct: 307 LMVGYG-ILVSLSDTYIRPAVIGKSGELSSAVIVVGIFGGIAVLGPIGLFVGPVILG 362


>gi|293372558|ref|ZP_06618940.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
 gi|292632367|gb|EFF50963.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
          Length = 176

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 1/133 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +++   +  ++RS  +G+ ++AI +G V    Y L G P+ + LG +T    +IP  G  
Sbjct: 17  QEVIHEINMIVRSNAIGIPLLAIIQGGVAMIGYLLFGAPNILMLGFLTCFATIIPMVGTA 76

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +  V+ YL I G+ FNA  LF +GAI +   D  +R  L         L T FG+V G
Sbjct: 77  LVWFPVAAYLAISGDWFNAIGLFGYGAIVVSQSDNLIRFILQKKMADTHPLITIFGVVIG 136

Query: 320 VRTMGLLGLFIGP 332
           +   G +G+  GP
Sbjct: 137 LPIFGFMGVIFGP 149


>gi|253688831|ref|YP_003018021.1| hypothetical protein PC1_2454 [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251755409|gb|ACT13485.1| protein of unknown function UPF0118 [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 395

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 78/358 (21%), Positives = 151/358 (42%), Gaps = 32/358 (8%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I  +I+   + ++ F      A ++   +WP+   F +      +   ++ T+ ++ LFI
Sbjct: 48  ITIMIIACFWVVQPFILGFAWACMVVIATWPMLIKFQALLWGRRSLAVIVMTLLLILLFI 107

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           VP+  L    +     L+S          P   WL+ IP  +   +L+            
Sbjct: 108 VPIGVLVSSVVDNSSALMSWGARQENFSPPTLEWLTSIP--LVGEKLFNSW--------- 156

Query: 136 LSETFLKTNGIDFIPRFASRFGMI-------------FLDYCLSIIFMIIALFFFYRDGF 182
             +  L++ G     +    FG               FL +C S++ +  AL ++   G 
Sbjct: 157 --QALLQSGGSGLFAKVQPYFGKTATWLVAQAAHVGRFLMHC-SLMLIFSALLYY--KGE 211

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           ++++ +      L          +  + IR+  LG+ + AI + ++ G    L+G+P   
Sbjct: 212 AVAKAVRHFAIRLGQERGDAAVILAAQSIRAVALGVVVTAIVQSVLGGIGLGLSGIPYTT 271

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  +  +   G  P+   A+ I+L   G+    T L +W  + +  +D  +RP L+
Sbjct: 272 LLTVLMFLCCLAQLGPLPVLIPAI-IWLYWTGDNTWGTILLVWSCV-VGTIDNIIRPVLI 329

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                LP L    G++GG+   G++GLFIGPV++A+   +    +  I E +  +S N
Sbjct: 330 RMGADLPMLLILSGVIGGLLAFGMIGLFIGPVVLAVSYRLLFAWMREIPEPQNILSVN 387


>gi|237749317|ref|ZP_04579797.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229380679|gb|EEO30770.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 375

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 88/183 (48%), Gaps = 5/183 (2%)

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           LF+F RD   I + +      L       + ++V   IR+T  G   ++  +G + G  +
Sbjct: 180 LFYFLRDRNEILRTVRRFSP-LCGRETNGLFKVVNDTIRATVFGTLAVSAVKGFLSGFMF 238

Query: 234 WLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           W+ G+P+ +  G I  I+++IP  G+ I +   ++YL + G    A  L +WG +   +V
Sbjct: 239 WVLGLPAPLLWGSIMGILSIIPLLGSYIIWIPAAVYLALDGYWAQALVLVIWGIVVGGVV 298

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM---ALIAVIWKESIMAI 349
           +  L P LV   +KL  +  F  L GG+   G  G+ +GP+ +   A +  +W+      
Sbjct: 299 NNVLYPILVSKKLKLHTIVAFIALAGGILVYGASGVILGPITLTASAFLLHLWRLKATGY 358

Query: 350 KEN 352
           K +
Sbjct: 359 KRD 361


>gi|150400877|ref|YP_001324643.1| hypothetical protein Maeo_0445 [Methanococcus aeolicus Nankai-3]
 gi|150013580|gb|ABR56031.1| protein of unknown function UPF0118 [Methanococcus aeolicus
           Nankai-3]
          Length = 393

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 172/371 (46%), Gaps = 56/371 (15%)

Query: 17  MFIILVSLYFLKGFFAPVLSALII----GFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           +F+ LVSL  +   F P L  L +     + S P+Y     K   S +        S+MC
Sbjct: 12  LFVSLVSLSLIYTVF-PYLDVLALSCALAYMSKPVYDKLKPKFGSSIS--------SMMC 62

Query: 73  LF--IVPLL---FLFYYGMLEMKELVS--KVVLANQHGIPVPRW----LSDIPGGMWASE 121
           L   IVP++   F+  Y +LE  + ++  ++ + N + I +  +    LS+I G     +
Sbjct: 63  LLFVIVPMVIIGFIILYQILEFLQFLNLNQLDIQNLNLISLINYKLNYLSNILGYNIPIK 122

Query: 122 LWTKHLSHPQSLKILS--ETFLKT--NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
           L  + LS   SL ILS  E  + T  +G+  +P  A           + +I  +   F+F
Sbjct: 123 LEEEKLSQYISL-ILSYLEPHISTAVSGLLLLPEIA-----------IKLIMGVFITFYF 170

Query: 178 YRDGFSISQ-QLDSLGEHLFPAYWKKISRIVPKVIRST----FLGMTIIAIGEGLVLGSA 232
            +DG+ I    LD++     P  ++  +++  K +  +    F G  + ++   ++    
Sbjct: 171 LKDGYHIKNIVLDNI-----PTEYQLKTQLYLKYLNESYQNLFTGTALTSVAIVIISFIG 225

Query: 233 YWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
           Y++ GV + + L V+T I A++P  GG  + +  +S+Y LI G+   A  +F++G + L 
Sbjct: 226 YFIFGVQNALLLSVLTGIFALLPIVGGWGV-YIPLSLYYLIIGDFVTAIGIFIFGWVFLS 284

Query: 291 IV-DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK-ESIMA 348
           +  D  +RP +V     +  +      +    T+G+ G  IGP+L      ++K +S + 
Sbjct: 285 LAPDFVIRPHIVKKESDVHPVVVLLAFLVAPLTLGIAGFAIGPILFGAFDALFKVKSKIK 344

Query: 349 IKENKEKISSN 359
             EN EKI  N
Sbjct: 345 YVEN-EKIKEN 354


>gi|294496066|ref|YP_003542559.1| hypothetical protein Mmah_1416 [Methanohalophilus mahii DSM 5219]
 gi|292667065|gb|ADE36914.1| protein of unknown function UPF0118 [Methanohalophilus mahii DSM
           5219]
          Length = 340

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 95/184 (51%), Gaps = 9/184 (4%)

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK---VIRSTFLGMTIIA 222
            +I + I +F  Y    + +++L+ +  ++ P   +    ++ +   +  ST LG+  IA
Sbjct: 151 QLIGLAIMVFLLYYLLSTDNKKLEEMALNILPFSTENKLHLLNEMRNITYSTILGILFIA 210

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCL 281
           + +G VL   + L G+   +  G IT I+++IP  G P+ +   ++Y +I+G+    T +
Sbjct: 211 LFQGGVLTITFLLLGIEGALLWGFITLILSIIPFIGPPLVWGPATVYKIIEGDFIAGTII 270

Query: 282 FLWGAIELFI--VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
           F+ G   +FI   D  LRP++      +  L +  GL  G+   G +GL +GPVL++   
Sbjct: 271 FVAG---MFISNFDYVLRPYIQEKFAAIHPLISLLGLFIGIYLFGAIGLVVGPVLLSCFI 327

Query: 340 VIWK 343
           ++ K
Sbjct: 328 LMLK 331


>gi|91774322|ref|YP_567014.1| hypothetical protein Mbur_2413 [Methanococcoides burtonii DSM 6242]
 gi|91713337|gb|ABE53264.1| protein of unknown function UPF0118 [Methanococcoides burtonii DSM
           6242]
          Length = 345

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/318 (20%), Positives = 143/318 (44%), Gaps = 27/318 (8%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           Y L  +    L A I+     P+Y     + +      A++  +  M L ++P+ ++F  
Sbjct: 25  YALLPYINAFLGAFILYVIFKPVYILLTERLKLKENISAILVMILSMILVVLPIYYMFTL 84

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE--TFLK 142
            + E++ +++ ++  N   + +  +   +    + +E+        + + ++S   ++L 
Sbjct: 85  IIGEIEMVITNII-TNLSYVDITNYFDIVKNIDYINEIAPDIDIQGKIVTLISTLGSYLS 143

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF-FYRDGFSISQQLDSLGEHLFPAYWK 201
            + I  +   +           +S+I M   L++ F     +IS QL    + L P   K
Sbjct: 144 KHLIGAVQNISGLL--------ISVIIMFFLLYYLFTSTNTNISNQL----QDLIPFNKK 191

Query: 202 KISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GG 257
             +++   +  +I ST +   +IA+ +G ++G  ++  G+        +T +++ +P  G
Sbjct: 192 NTNKLLTEIKNIIHSTLIATLLIAVLQGTIIGITFYAVGINGVALWAAVTTVLSFLPVVG 251

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL---VGGPIKLPFLPTFF 314
           AP+ +    ++ LI  + + A  + L   I L  +D  LRP++   VG     PF+ +  
Sbjct: 252 APLVWAPAVLFKLITQD-YVAAIVILVAGIILSNIDNVLRPYIQKKVGA--MHPFV-SLL 307

Query: 315 GLVGGVRTMGLLGLFIGP 332
           G+  G+   GL+G+ +GP
Sbjct: 308 GIFVGIYLFGLVGIVVGP 325


>gi|110598136|ref|ZP_01386414.1| Protein of unknown function UPF0118 [Chlorobium ferrooxidans DSM
           13031]
 gi|110340268|gb|EAT58765.1| Protein of unknown function UPF0118 [Chlorobium ferrooxidans DSM
           13031]
          Length = 359

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 152/340 (44%), Gaps = 35/340 (10%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +F  ++  +F+  F A + SAL     + P+++ F      S +  A +  V+++ +  +
Sbjct: 21  LFFAMIRYFFMAIFLAAIFSAL-----AMPLFNRFNRWFRGSQSLSAAMTIVTLLLVVFL 75

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
           PL  L       +  + S+ V  +   +P+ +     P  ++  +L T  L     L + 
Sbjct: 76  PLAAL-------LGVVASQAVRLSSIALPLIQQQIKEPA-VFDQQLRT--LPFYDELALY 125

Query: 137 SETFLKTNGIDFIPRFASRFGMIFL------------DYCLSIIFMIIALFFFYRDGFSI 184
            E  LK  G       AS+ G +              D  L  IF+   +FFF +DG   
Sbjct: 126 REEILKKAG-----ELASQAGSLLFSSISSFTVSAVNDLFLLFIFLY-TMFFFLKDGQLF 179

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             ++ +         ++ + R +  V R+T  G  ++ + +G + G A   AG+ S +  
Sbjct: 180 LDRILACLPLTKSDEYRLLDRFL-SVTRATLKGTLVVGVVQGSLAGLALHFAGIESAIFW 238

Query: 245 GVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           G + ++++++P  G PI +    IYL   G    A  + L+ +I +  +D  +RP L+G 
Sbjct: 239 GTVMSVISVVPVLGPPIVWVPAVIYLAATGQYPQAIGVALFCSIVVGQIDNIIRPILIGR 298

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             ++  L  FF  +GG+   GL G  +GP++ AL   +W+
Sbjct: 299 DTRMHELLIFFSTLGGIGFFGLFGFILGPIIAALFVTLWE 338


>gi|323139388|ref|ZP_08074439.1| protein of unknown function UPF0118 [Methylocystis sp. ATCC 49242]
 gi|322395381|gb|EFX97931.1| protein of unknown function UPF0118 [Methylocystis sp. ATCC 49242]
          Length = 368

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 146/317 (46%), Gaps = 15/317 (4%)

Query: 31  FAPVLS-ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           FAP+++ ++I+    +P+++   S+        AV  T   + L + P+ +L    ++E 
Sbjct: 48  FAPIIAWSVIMAVALYPVFAWLSSRLGGRPRLAAVALTCMSLVLVVGPVTWL-GLDLIEA 106

Query: 90  KELVSKVVLANQHGIPVP-RWLSDIPG-GMWASELWTKHLSHPQSLKILSETFLKTNGID 147
              +   V A +  +P P   + + P  G    + W+   ++ +S        LK  G  
Sbjct: 107 STGLIDSVNAGKLAVPPPVASVKEWPLIGQQLYDFWSLASTNMRSALAPLLPQLKPLGEK 166

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            I   +S  G+  L + LS++ M     F Y +   +   +++L   +  A   +   + 
Sbjct: 167 LIEAVSSA-GVGTLKFLLSVVVM--GFLFLYAE--PLVAVVENLASRIDGAQGARFVALA 221

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
              IR+   G+  +++ + +V G+   LA VP    L ++  I+ ++  G  +    V+I
Sbjct: 222 GDTIRAVSRGVIGVSLLQAVVAGAGMTLAAVPGASVLTLLVLILGIVQVGPGLVTVPVAI 281

Query: 268 YLLIKGNIFNATCLFLW-GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           +  +  +   A  L +  GA+ L   D  ++PF +   +  P + TF G++GG+   G++
Sbjct: 282 WAWLSLSPLPALGLTICLGAVSLS--DALVKPFFLSRGLTTPMIVTFVGVIGGILAHGII 339

Query: 327 GLFIGPVLMALIAVIWK 343
           GLF+GP+   ++AV W 
Sbjct: 340 GLFVGPI---VVAVAWN 353


>gi|212712086|ref|ZP_03320214.1| hypothetical protein PROVALCAL_03165 [Providencia alcalifaciens DSM
           30120]
 gi|212685608|gb|EEB45136.1| hypothetical protein PROVALCAL_03165 [Providencia alcalifaciens DSM
           30120]
          Length = 371

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 77/154 (50%), Gaps = 1/154 (0%)

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
           +  + IR+  LG+ + A+ + +V G    L+G+     L V+  I  +   G  +     
Sbjct: 207 LAAQSIRAVALGVVVTALIQAIVGGIGLALSGISYAAILTVLIFICCVAQLGPLLVMVPS 266

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            ++L   G+   A  L +W A+ +  +D  LRP+L+     LP +    G++GG+ + G+
Sbjct: 267 VLWLFWTGDTTWAIILGVWAAV-VATMDGVLRPWLIKMGADLPMVLILVGVIGGILSFGM 325

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +GLFIGPV++A+   + K  +  +    E + + 
Sbjct: 326 IGLFIGPVVLAVSYSLLKAWMNEVAPPSEDLEAT 359


>gi|149278254|ref|ZP_01884392.1| hypothetical protein PBAL39_11872 [Pedobacter sp. BAL39]
 gi|149231020|gb|EDM36401.1| hypothetical protein PBAL39_11872 [Pedobacter sp. BAL39]
          Length = 350

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 78/150 (52%), Gaps = 5/150 (3%)

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI 271
           +  LG   IA+ +G ++  A+++   P  +  GVIT  ++ +P  G PI F   +I  ++
Sbjct: 195 ANVLGQGFIAMVQGSLVSLAFYVLDYPDPLFWGVITTFISFVPVLGPPIVFVPAAIIQML 254

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
            GN   A  + ++G + +  +D  LR  +      +  + T  G+V G+   G+LGL  G
Sbjct: 255 NGNNVAAWAMLIFGFVVIINIDNVLRFMIAKKVGNIHPIITVIGVVIGIPLFGILGLVFG 314

Query: 332 PVLMA---LIAVIWKESIMAIKENKEKISS 358
           P+L++   L+  I++ S MA  E  E+I +
Sbjct: 315 PLLLSYFILLVKIYETSAMA-TERLERIKT 343


>gi|284006304|emb|CBA71539.1| putative inner membrane protein [Arsenophonus nasoniae]
          Length = 369

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 138/334 (41%), Gaps = 28/334 (8%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I+ +I    + L+ F    L A ++   +WP++    SK        ++  T+ V+ LF+
Sbjct: 20  ILLMITACFWVLRPFILGFLWAGMVVIATWPLFKKIESKLWHKKWLASIAMTLIVILLFV 79

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL-WTKHLSH-PQSL 133
           +P   L           +  ++   Q+  P+  W    P  +   EL W K+L      L
Sbjct: 80  IPFAIL-----------IGSII---QNSGPLIEWAKS-PAEIRLPELLWLKNLPFIGNKL 124

Query: 134 KILSETFLKTNGIDFIPRFASRFGMI---FLDYCLS---IIFMIIALFFF----YRDGFS 183
                T +   G   I +     G     FL   ++    +F +I +  F    +  G S
Sbjct: 125 FYGWHTLVANGGNTLISKLQPYVGEATSWFLAQAINAGRFMFHLIVMLLFSALLFLKGES 184

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +   +      L          +  + IR+  LG+ + A+ + ++ G    LA VP    
Sbjct: 185 VISSIRHFAIRLAGTRGDMAILLAGQSIRAVALGVVVTALIQAIISGIGLALADVPYAAI 244

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           L ++  +  +   G  +      I+L   G+   A  + +W +I +  +D  LRP L+  
Sbjct: 245 LTILIFVCCVAQLGPLLIMVPSIIWLFWSGDTSWAIIMIVW-SIIVATMDGVLRPILIKM 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
              L  +    G++GG+ + G++GLFIGPV++A+
Sbjct: 304 GANLSMILILIGVIGGILSFGVIGLFIGPVVLAV 337


>gi|294636262|ref|ZP_06714670.1| putative membrane protein [Edwardsiella tarda ATCC 23685]
 gi|291090449|gb|EFE23010.1| putative membrane protein [Edwardsiella tarda ATCC 23685]
          Length = 368

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 5/150 (3%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           + IR+  LG+ + A+ + L+ G    ++G+   V L V+  +  +   G  +       +
Sbjct: 211 QAIRAVALGVVVTALAQSLLAGIGLAVSGIHYAVLLTVVMFVCCLAQLGPLLVLLPAVGW 270

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L   G+    T L +W  + +  +D  LRP L+     LP L    G++GG+   G++GL
Sbjct: 271 LYWSGDTTWGTLLLVWSGV-VGTMDNVLRPALIRMGADLPMLLVLSGVIGGLLAFGMIGL 329

Query: 329 FIGPVLMA----LIAVIWKESIMAIKENKE 354
           FIGPV++A    L++    E+   +K+ ++
Sbjct: 330 FIGPVVLAVSYRLVSAWVNEAPPPVKDARQ 359


>gi|57641584|ref|YP_184062.1| hypothetical protein TK1649 [Thermococcus kodakarensis KOD1]
 gi|57159908|dbj|BAD85838.1| hypothetical membrane protein, conserved, DUF20 family
           [Thermococcus kodakarensis KOD1]
          Length = 345

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 95/199 (47%), Gaps = 20/199 (10%)

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT----IIAIGEGLVL 229
           L F+Y  G + S+Q+      L P   +++   +   +  T   +     ++ + +G+++
Sbjct: 144 LAFYY--GLAYSEQIARTIRELLPEENRELGEEILTSVHKTLSALVRAWLLLNVAKGILM 201

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPI-----SFTAVSIYLLIKGNIFNATCLFLW 284
              Y + GV S V   VI   +       P+      + A +IY  + G   +A  + ++
Sbjct: 202 TLGYIVFGV-SDVYTAVIAGFLTFAFSFVPLFEGWMIWLAAAIYFALNGMYLHAIGISVY 260

Query: 285 GAIELFIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           GA   F+V    D T+RP LV    +L     F G+VGG   MGL G+ IGP+++ ++ V
Sbjct: 261 GA---FLVSPMPDYTIRPMLVARDTELDETLVFIGMVGGTWAMGLKGIIIGPIVLNVLLV 317

Query: 341 IWKESIMAIKENKEKISSN 359
           + KE    + E+  ++SS+
Sbjct: 318 LIKE-WKKLTESSHQLSSS 335


>gi|159906021|ref|YP_001549683.1| hypothetical protein MmarC6_1639 [Methanococcus maripaludis C6]
 gi|159887514|gb|ABX02451.1| protein of unknown function UPF0118 [Methanococcus maripaludis C6]
          Length = 334

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 93/198 (46%), Gaps = 14/198 (7%)

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI----VPKVIRSTFLGMTI 220
           + ++F+    F+F +DG  I            P   +K + I    + K +++ F+G  +
Sbjct: 144 MKLLFLSFMTFYFLKDGDKIKNSF----MLYVPKEKQKNAEIFVNEIHKALKTLFIGNAV 199

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNA 278
            ++  G +    YWL G+P+ + LG ++ I+ ++P  GG  I +  +++Y L+ G I   
Sbjct: 200 TSLIVGFISIIGYWLIGIPNPITLGALSGILNILPVVGGWTI-YVPLTVYYLLTGEIVKG 258

Query: 279 TCLFLWGAIELFIV-DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
             L  +G + L +  D  +RP ++     L         + G    G+ GL IGP+++A 
Sbjct: 259 VLLGFFGIVFLSLAPDFAIRPRVISKDGDLHPALVLIAFLIGPLVFGIPGLAIGPIIVAT 318

Query: 338 IAVIWKESIMAIKENKEK 355
           +  I K  +    EN+E 
Sbjct: 319 VYAIHK--VRRSIENREN 334


>gi|194290057|ref|YP_002005964.1| hypothetical protein RALTA_A1960 [Cupriavidus taiwanensis LMG
           19424]
 gi|193223892|emb|CAQ69901.1| conserved hypothetical protein, UPF0118; putative membrane protein
           [Cupriavidus taiwanensis LMG 19424]
          Length = 367

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 79/146 (54%), Gaps = 10/146 (6%)

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH--VALGVITAIMAMI 254
           P   ++I+ +    IR+   G+  IA  + L++G A+ + GVP+   +A+ V+   +A +
Sbjct: 203 PERGQRIASLCTATIRAVAQGVVGIAFIQMLLIGVAFVIKGVPAAGVLAMAVLLLGIAQL 262

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV---DKTLRPFLVGGPIKLPFLP 311
           P  A +    V IY+        AT +F   +I +F+    D  L+P L+G  + +P   
Sbjct: 263 P--ATLITVPVIIYVFASEGASVATIVF---SIYVFVAGLADNVLKPLLLGRGVDVPMPV 317

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMAL 337
              G +GG+ T G++GLFIGPV++A+
Sbjct: 318 VLIGALGGMVTGGVIGLFIGPVVLAV 343


>gi|284163852|ref|YP_003402131.1| hypothetical protein Htur_0560 [Haloterrigena turkmenica DSM 5511]
 gi|284013507|gb|ADB59458.1| protein of unknown function UPF0118 [Haloterrigena turkmenica DSM
           5511]
          Length = 339

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 76/152 (50%), Gaps = 5/152 (3%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSI 267
           +V+ +  +G  +IA+ +GL+ G    + G+P+     VI  ++A+IP  G  + +    +
Sbjct: 188 EVMHAVLIGHVLIALVQGLLAGIGLIVTGIPNAAFWTVIMVVLALIPIIGTFLVWGPAVV 247

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +LL  G    A  LF++  + + + D  LRP +V    +L       G++GG    G +G
Sbjct: 248 FLLATGEPLFAVGLFVYSTVIVGLSDDYLRPLVVDRYAELNPAVIIVGVLGGAYAFGFMG 307

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           LF GPV++  +    + ++    +N +++   
Sbjct: 308 LFFGPVILGAL----RATLTVFHDNYDRLERE 335


>gi|27379781|ref|NP_771310.1| hypothetical protein bll4670 [Bradyrhizobium japonicum USDA 110]
 gi|27352934|dbj|BAC49935.1| bll4670 [Bradyrhizobium japonicum USDA 110]
          Length = 365

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 138/309 (44%), Gaps = 33/309 (10%)

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASE 121
           A I T+  + + I P  +L    +  ++EL  ++   +      P  L   P  G W  +
Sbjct: 72  AAILTLITLGIVIGPATWLGISAVDGVRELAHQLGTGDLALQSAPEQLKSWPLVGPWLYD 131

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           LW +  ++ +++      +L+      +  FA   G+  L + +S+    +A F F    
Sbjct: 132 LWDQAYTNIRAVLREVAPYLQPLAGPLL-SFAGDAGVGTLQFLVSVF---VAGFLFPH-- 185

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPK-----------VIRSTFLGMTIIAIGEGLVLG 230
                     G  L  A    + RIVP+            IR+   G+  +AI + L+ G
Sbjct: 186 ----------GPRLVAASRGFLFRIVPEQSEHFLGLAGATIRAVAQGVIGVAIVQALLAG 235

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
             + LA VPS   L  I  +++++  GA +    V I++    ++  A  L ++  +  F
Sbjct: 236 IGFKLAAVPSAGLLAFIVLLLSIVQIGAFLVLLPVIIWIWTAKDVTTALLLTVFLVLVGF 295

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           I D  L+P ++G  +  P +  F G++GG    G++GLFIGP+++   +V W E +MA  
Sbjct: 296 I-DTMLKPLVMGRGLTTPTIVIFVGVIGGTLAHGIVGLFIGPIIL---SVAW-EMMMAWI 350

Query: 351 ENKEKISSN 359
             +++  + 
Sbjct: 351 RTEDRAGAG 359


>gi|119477618|ref|ZP_01617768.1| hypothetical protein GP2143_09155 [marine gamma proteobacterium
           HTCC2143]
 gi|119449121|gb|EAW30361.1| hypothetical protein GP2143_09155 [marine gamma proteobacterium
           HTCC2143]
          Length = 364

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 146/329 (44%), Gaps = 18/329 (5%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           ++  II++ +     FF  ++ ALI+    +P+  S   K   +S   A +  +  + L 
Sbjct: 26  VVTIIIVLCIQVFAPFFGIMMWALILAVALYPLNLSLAKKFNGNSGRAAALIVIIGLLLI 85

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSH-PQS 132
             P + L       + +L ++      H  P    ++++P  G   + +WT       Q+
Sbjct: 86  GGPAVALGKSFTSHLLDLYTEFNSGKLHIQPPNSSVAELPLIGETLNRVWTNAADDLEQT 145

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ-LDSL 191
           LK + E  LK      +   AS  G +F  +   +I  I+  +     G S SQ  L+ L
Sbjct: 146 LKNV-EPQLKELSKKALVIAASTTGEVFSFFASMVIAGIMMAY-----GRSGSQAMLEIL 199

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                     K+  +    IRS   G+  +A  + L+LG+ +  AG+P    LGVI  ++
Sbjct: 200 QRVSSEEKGGKLQALCVGTIRSVATGVIGVAFIQALLLGAGFIFAGIPGAGILGVIVLVV 259

Query: 252 AM--IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV---DKTLRPFLVGGPIK 306
            +  IP  A ++  A++ YL   G+   A+ +     + LF+    D  L+P L+G  + 
Sbjct: 260 GILQIPA-ALVTLPAIA-YLWFGGDASTASNIAF--TVYLFVAGLADNVLKPMLLGRGVD 315

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
            P      G +GG+   G++GLF+G VL+
Sbjct: 316 APMPVVLLGALGGMVVAGIMGLFVGSVLL 344


>gi|297619520|ref|YP_003707625.1| protein of unknown function UPF0118 [Methanococcus voltae A3]
 gi|297378497|gb|ADI36652.1| protein of unknown function UPF0118 [Methanococcus voltae A3]
          Length = 360

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 104/200 (52%), Gaps = 16/200 (8%)

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
           L I+FM    ++F +DG  +           + A+ K  ++ +    ++ F G  + ++ 
Sbjct: 148 LIILFMT---YYFLKDGHKLLNATLIHIPECYQAHVKIFAQKLNDSYKNMFTGTALTSLI 204

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLF 282
             ++    Y L G+P+ +ALGV+T I  ++P  GG  I +  ++IY L++G I  A  ++
Sbjct: 205 AMVIAIIGYQLLGIPNALALGVLTGICVLLPVVGGWGI-YMPLAIYYLLQGEILYALTIY 263

Query: 283 LWGAIEL-FIVDKTLRPFLV--GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
           ++G I L FI+D  +RP +V  GG +  P + T    +    T+G+ G  +GP+++    
Sbjct: 264 MFGTIFLSFILDFYIRPKVVKSGGNVH-PVM-TLTAFLIAPLTLGIAGFALGPIIVGAFD 321

Query: 340 VIW-----KESIMAIKENKE 354
            ++     + S++ +++N E
Sbjct: 322 SLYGLKDGEISLINLRQNCE 341


>gi|117921351|ref|YP_870543.1| hypothetical protein Shewana3_2910 [Shewanella sp. ANA-3]
 gi|117613683|gb|ABK49137.1| protein of unknown function UPF0118 [Shewanella sp. ANA-3]
          Length = 369

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 145/350 (41%), Gaps = 40/350 (11%)

Query: 11  IMRWMIMFIILVSLYFLKGF----FAPVLS----ALIIGFTSWPIYSSFISKKEESSTFL 62
           + ++M MFI    L  L  F    F+P L+    A+I+    +P +     +  +     
Sbjct: 14  VTKFMDMFIKFGMLLALASFCYTIFSPFLNIMLWAVILAVVIYPFHQRIAKRLSDKQGRA 73

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP---RWLSDIP-GGMW 118
           A +  V  + + ++P + +       M  LV +V   NQ+ + VP     +++IP  G  
Sbjct: 74  ATLLIVIGLMILVLPTIMMVSSMTDNMGSLVERV---NQNTLEVPTPKESIANIPFVGAK 130

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             + W K  +   SL    +  L       I   AS    + +       F+I  +   Y
Sbjct: 131 IYDFWLKASTDLPSLVKSLQPHLGDAAKQVIHALASISASLLMSM---FSFIIAGIMMAY 187

Query: 179 RDGFSISQQLDSLGEHLF-PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             G + +Q    +   +  P    K+  I    IR+  LG+  +A  + L++G     AG
Sbjct: 188 --GHAGAQSSARIATRIAGPERGAKLVNICSSTIRAVALGVIGVAFIQALLIGIVMTFAG 245

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSI----YLLIKGN------IFNATCLFLWGAI 287
           +P    L  I  I+ +I G A I    V++    Y+ + G+      I     L L GA 
Sbjct: 246 IP----LVGIFFILVLILGIAQIPALLVTLPAIAYIWMAGDNGTVGSIIYTVLLILAGA- 300

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
               VD  L+P  +G  +  P      G +GG+ T G+LG+FIG  L+++
Sbjct: 301 ----VDNVLKPIFLGRGVDAPMPVVLIGALGGMATSGILGMFIGATLLSI 346


>gi|255693657|ref|ZP_05417332.1| conserved hypothetical protein [Bacteroides finegoldii DSM 17565]
 gi|260620544|gb|EEX43415.1| conserved hypothetical protein [Bacteroides finegoldii DSM 17565]
          Length = 334

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 93/200 (46%), Gaps = 12/200 (6%)

Query: 141 LKTNGIDFIPRFASRFGMIFLD----YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           L  + + FI     R G + +       +++  MI  L+F    G    +++++    + 
Sbjct: 119 LGKDTLSFIVSILPRIGQLIMSSISSLAVNLFVMIFVLYFMLIGG----KKMEAYINDIL 174

Query: 197 PAYWKKISRIVPKV---IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           P        ++ ++   +RS  +G+ ++AI +G +    Y + G P+ + LG +T    +
Sbjct: 175 PFNETNTREVIHEINMIVRSNAIGIPLLAIIQGGIAMIGYLIFGAPNVLLLGFLTCFATI 234

Query: 254 IPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP  G  + +  V+ YL I G+ F+A  LF +GAI +   D  +R  L         L T
Sbjct: 235 IPMVGTALVWFPVASYLAISGDWFHAIGLFAYGAIVVSQSDNLIRFILQKKMADTHPLIT 294

Query: 313 FFGLVGGVRTMGLLGLFIGP 332
            FG+V G+   G +G+  GP
Sbjct: 295 IFGVVIGLPLFGFMGIIFGP 314


>gi|294141912|ref|YP_003557890.1| hypothetical protein SVI_3141 [Shewanella violacea DSS12]
 gi|293328381|dbj|BAJ03112.1| conserved hypothetical protein [Shewanella violacea DSS12]
          Length = 371

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 160/359 (44%), Gaps = 35/359 (9%)

Query: 16  IMFIILVSLY---FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           I  I LV+++    +K F  P++   II  T +P+ S    K   S    + + T+  + 
Sbjct: 23  IAVIFLVAIWCFEIIKPFIMPIVWGGIIAVTLFPLVSQLSKKSSLSLARASALVTLVSLA 82

Query: 73  LFIVPLLFLFYYGMLE-MKELVSKVVLANQHG---IPVPRW-LSDIPG-GMWASELWTKH 126
           L ++P  FLF   ++   ++ + ++    Q G   IP P+  ++++P  G      W + 
Sbjct: 83  LLLIPA-FLFSGALVSSTQDFIGEI----QQGTLVIPPPKESVAELPLIGNKLYSFWDQS 137

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASR------FGMIFLDYCLSIIFMIIALFFFYRD 180
            ++  S+       +KT+ ++     A        FGM  L + +SII   +       +
Sbjct: 138 STNLASV-------IKTHSVEIKAVLAKAVSALGGFGMTVLQFVISIIIAGV----LMTN 186

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
               S+    +   L  +Y K+++++    +RS   G+  +A  + ++ G    + GVP+
Sbjct: 187 AKGASEVCQKIAIRLAGSYGKELTKLSVATVRSVVQGVIGVAFIQSILSGIGMGVVGVPA 246

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
                ++  ++A++     +    + +Y+    +   A    +WG I +   D  L+P L
Sbjct: 247 TGIWMLVVLLLAIVQLPPILILAPIMVYVFSVESTSVAIMFMVWG-ILVSASDAILKPML 305

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +G  + +P L    G +GG+   G++GLF+G V+M L    +K  I  I    E + +N
Sbjct: 306 MGRGVDIPMLVILLGAIGGMLMSGVVGLFVGAVVMGL---GYKLFIAWIDAEPETVKTN 361


>gi|269960287|ref|ZP_06174661.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834898|gb|EEZ88983.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 383

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 99/202 (49%), Gaps = 14/202 (6%)

Query: 165 LSIIFMIIAL-FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
           LSII + IA  F  Y +  S++  L ++         K  + ++   I+S  LG+  +A 
Sbjct: 173 LSIISLAIAAGFMTYSE--SLASGLKTIAVRTAGDNAKSWTTLIAATIKSVLLGVVGVAA 230

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
            + L++G+ +++ GVP+   L ++  I+ +    A ++   V  Y+ +  +   AT   +
Sbjct: 231 IQALLIGAGFFIFGVPAAGLLTLVLMILCIAQLPALLAVLPVVGYMYMTQDTSTATMFTV 290

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           W  +   + +   +P L+G  + +P      G +GG+   G++GLF+G V++A    IW 
Sbjct: 291 W-VVVAALSENLFKPMLMGRGVDVPMPVILLGAIGGMLFYGIVGLFLGAVILA----IWY 345

Query: 344 E------SIMAIKENKEKISSN 359
           E      +I   ++ +E ++ N
Sbjct: 346 ELFVWWLNIEKAQQQQEALAEN 367


>gi|121637032|ref|YP_977255.1| hypothetical protein BCG_1161c [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224989505|ref|YP_002644192.1| hypothetical protein JTY_1134 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|260186029|ref|ZP_05763503.1| hypothetical protein MtubCP_08383 [Mycobacterium tuberculosis
           CPHL_A]
 gi|121492679|emb|CAL71148.1| Conserved membrane protein [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224772618|dbj|BAH25424.1| hypothetical protein JTY_1134 [Mycobacterium bovis BCG str. Tokyo
           172]
          Length = 342

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 5/172 (2%)

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           +++ +AL        ++  QL+ LGE +   Y +K+  +V    R T  G  +IA  +G+
Sbjct: 128 VYVFVALLVNREKLRTLIGQLNPLGEDVTDLYLQKMGSMV----RGTVNGQFVIAACQGV 183

Query: 228 VLGSAYWLAGVPSHVAL-GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
              ++ ++AG      +  ++   +++IP G  I      I ++  GNI     + LW  
Sbjct: 184 AGAASIYIAGFHHGFFIFAIVLTALSIIPLGGGIVTIPFGIGMIFYGNIAGGIFVLLWHL 243

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           + +  +D  LRP LV    +L        +  G+   G  G+ IGPVLM LI
Sbjct: 244 LVVTNIDNVLRPILVPRDARLNSALMLLSVFAGITMFGPWGIIIGPVLMILI 295


>gi|15608241|ref|NP_215617.1| hypothetical protein Rv1101c [Mycobacterium tuberculosis H37Rv]
 gi|15840540|ref|NP_335577.1| hypothetical protein MT1133 [Mycobacterium tuberculosis CDC1551]
 gi|148660887|ref|YP_001282410.1| hypothetical protein MRA_1112 [Mycobacterium tuberculosis H37Ra]
 gi|148822313|ref|YP_001287067.1| hypothetical protein TBFG_11122 [Mycobacterium tuberculosis F11]
 gi|167969235|ref|ZP_02551512.1| hypothetical protein MtubH3_14895 [Mycobacterium tuberculosis
           H37Ra]
 gi|215402931|ref|ZP_03415112.1| hypothetical protein Mtub0_04401 [Mycobacterium tuberculosis
           02_1987]
 gi|215410721|ref|ZP_03419529.1| hypothetical protein Mtub9_05210 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215426395|ref|ZP_03424314.1| hypothetical protein MtubT9_08412 [Mycobacterium tuberculosis T92]
 gi|215429975|ref|ZP_03427894.1| hypothetical protein MtubE_04673 [Mycobacterium tuberculosis
           EAS054]
 gi|215445267|ref|ZP_03432019.1| hypothetical protein MtubT_04733 [Mycobacterium tuberculosis T85]
 gi|218752788|ref|ZP_03531584.1| hypothetical protein MtubG1_04765 [Mycobacterium tuberculosis GM
           1503]
 gi|219556985|ref|ZP_03536061.1| hypothetical protein MtubT1_06650 [Mycobacterium tuberculosis T17]
 gi|253799860|ref|YP_003032861.1| hypothetical protein TBMG_02883 [Mycobacterium tuberculosis KZN
           1435]
 gi|254231381|ref|ZP_04924708.1| conserved membrane protein [Mycobacterium tuberculosis C]
 gi|254364007|ref|ZP_04980053.1| conserved membrane protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254550098|ref|ZP_05140545.1| hypothetical protein Mtube_06519 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260200141|ref|ZP_05767632.1| hypothetical protein MtubT4_08443 [Mycobacterium tuberculosis T46]
 gi|289442532|ref|ZP_06432276.1| conserved membrane protein [Mycobacterium tuberculosis T46]
 gi|289555113|ref|ZP_06444323.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605]
 gi|289569093|ref|ZP_06449320.1| conserved membrane protein [Mycobacterium tuberculosis T17]
 gi|289744845|ref|ZP_06504223.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289749636|ref|ZP_06509014.1| conserved membrane protein [Mycobacterium tuberculosis T92]
 gi|289753166|ref|ZP_06512544.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289757189|ref|ZP_06516567.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289761240|ref|ZP_06520618.1| conserved membrane protein [Mycobacterium tuberculosis GM 1503]
 gi|294993282|ref|ZP_06798973.1| hypothetical protein Mtub2_01932 [Mycobacterium tuberculosis 210]
 gi|297633640|ref|ZP_06951420.1| hypothetical protein MtubK4_05944 [Mycobacterium tuberculosis KZN
           4207]
 gi|297730627|ref|ZP_06959745.1| hypothetical protein MtubKR_06034 [Mycobacterium tuberculosis KZN
           R506]
 gi|306775256|ref|ZP_07413593.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
 gi|306781830|ref|ZP_07420167.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
 gi|306788174|ref|ZP_07426496.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
 gi|306792503|ref|ZP_07430805.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
 gi|306796908|ref|ZP_07435210.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
 gi|306802786|ref|ZP_07439454.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008]
 gi|306806968|ref|ZP_07443636.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
 gi|306967170|ref|ZP_07479831.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
 gi|307079086|ref|ZP_07488256.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011]
 gi|307083650|ref|ZP_07492763.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
 gi|313657957|ref|ZP_07814837.1| hypothetical protein MtubKV_06039 [Mycobacterium tuberculosis KZN
           V2475]
 gi|8928492|sp|O53449|Y1101_MYCTU RecName: Full=UPF0118 membrane protein Rv1101c/MT1133
 gi|2896738|emb|CAA17217.1| CONSERVED MEMBRANE PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|13880717|gb|AAK45391.1| membrane protein, putative [Mycobacterium tuberculosis CDC1551]
 gi|124600440|gb|EAY59450.1| conserved membrane protein [Mycobacterium tuberculosis C]
 gi|134149521|gb|EBA41566.1| conserved membrane protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148505039|gb|ABQ72848.1| hypothetical protein MRA_1112 [Mycobacterium tuberculosis H37Ra]
 gi|148720840|gb|ABR05465.1| conserved membrane protein [Mycobacterium tuberculosis F11]
 gi|253321363|gb|ACT25966.1| conserved membrane protein [Mycobacterium tuberculosis KZN 1435]
 gi|289415451|gb|EFD12691.1| conserved membrane protein [Mycobacterium tuberculosis T46]
 gi|289439745|gb|EFD22238.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605]
 gi|289542847|gb|EFD46495.1| conserved membrane protein [Mycobacterium tuberculosis T17]
 gi|289685373|gb|EFD52861.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289690223|gb|EFD57652.1| conserved membrane protein [Mycobacterium tuberculosis T92]
 gi|289693753|gb|EFD61182.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289708746|gb|EFD72762.1| conserved membrane protein [Mycobacterium tuberculosis GM 1503]
 gi|289712753|gb|EFD76765.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|308216193|gb|EFO75592.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
 gi|308325466|gb|EFP14317.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
 gi|308335191|gb|EFP24042.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
 gi|308338997|gb|EFP27848.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
 gi|308342664|gb|EFP31515.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
 gi|308346550|gb|EFP35401.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
 gi|308350470|gb|EFP39321.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008]
 gi|308355121|gb|EFP43972.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
 gi|308362999|gb|EFP51850.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011]
 gi|308366647|gb|EFP55498.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
 gi|323720381|gb|EGB29475.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
 gi|326904672|gb|EGE51605.1| conserved membrane protein [Mycobacterium tuberculosis W-148]
 gi|328459605|gb|AEB05028.1| conserved membrane protein [Mycobacterium tuberculosis KZN 4207]
          Length = 385

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 5/172 (2%)

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           +++ +AL        ++  QL+ LGE +   Y +K+  +V    R T  G  +IA  +G+
Sbjct: 171 VYVFVALLVNREKLRTLIGQLNPLGEDVTDLYLQKMGSMV----RGTVNGQFVIAACQGV 226

Query: 228 VLGSAYWLAGVPSHVAL-GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
              ++ ++AG      +  ++   +++IP G  I      I ++  GNI     + LW  
Sbjct: 227 AGAASIYIAGFHHGFFIFAIVLTALSIIPLGGGIVTIPFGIGMIFYGNIAGGIFVLLWHL 286

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           + +  +D  LRP LV    +L        +  G+   G  G+ IGPVLM LI
Sbjct: 287 LVVTNIDNVLRPILVPRDARLNSALMLLSVFAGITMFGPWGIIIGPVLMILI 338


>gi|31792294|ref|NP_854787.1| hypothetical protein Mb1131c [Mycobacterium bovis AF2122/97]
 gi|31617882|emb|CAD93992.1| CONSERVED MEMBRANE PROTEIN [Mycobacterium bovis AF2122/97]
          Length = 342

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 5/172 (2%)

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           +++ +AL        ++  QL+ LGE +   Y +K+  +V    R T  G  +IA  +G+
Sbjct: 128 VYVFVALLVNREKLRTLIGQLNPLGEDVTDLYLQKMGSMV----RGTVNGQFVIAACQGV 183

Query: 228 VLGSAYWLAGVPSHVAL-GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
              ++ ++AG      +  ++   +++IP G  I      I ++  GNI     + LW  
Sbjct: 184 AGAASIYIAGFHHGFFIFAIVLTALSIIPLGGGIVTIPFGIGMIFYGNIAGGIFVLLWHL 243

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           + +  +D  LRP LV    +L        +  G+   G  G+ IGPVLM LI
Sbjct: 244 LVVTNIDNVLRPILVPRDARLNSALMLLSVFAGITMFGPWGIIIGPVLMILI 295


>gi|55378831|ref|YP_136681.1| hypothetical protein rrnAC2127 [Haloarcula marismortui ATCC 43049]
 gi|55231556|gb|AAV46975.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 236

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 6/148 (4%)

Query: 197 PAYWKKISRIVPKVIRSTFLGMTII----AIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           PA + ++   + + +R T   + ++    A G  +V    +WL G     AL V+  I+ 
Sbjct: 70  PASYHEVVNRLHQRLRGTLYAIYVLQAATAFGTFVVAWVVFWLLGYQGAFALAVVAGILQ 129

Query: 253 MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLVGGPIKLPFL 310
            +P  G  +    +++  +I GNI  A  + ++G + + F+ D  +RP L      LP  
Sbjct: 130 FVPVIGPSVVVLTIAVADIINGNITGAVLVTVFGLVFVGFLPDAVIRPKLARYTTGLPAS 189

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             F G  GGV T+G++G   GPV++AL+
Sbjct: 190 LYFVGFTGGVLTLGVIGFIAGPVVIALL 217


>gi|298524597|ref|ZP_07012006.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308378833|ref|ZP_07484018.2| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
 gi|298494391|gb|EFI29685.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308359074|gb|EFP47925.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
          Length = 350

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 5/172 (2%)

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           +++ +AL        ++  QL+ LGE +   Y +K+  +V    R T  G  +IA  +G+
Sbjct: 136 VYVFVALLVNREKLRTLIGQLNPLGEDVTDLYLQKMGSMV----RGTVNGQFVIAACQGV 191

Query: 228 VLGSAYWLAGVPSHVAL-GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
              ++ ++AG      +  ++   +++IP G  I      I ++  GNI     + LW  
Sbjct: 192 AGAASIYIAGFHHGFFIFAIVLTALSIIPLGGGIVTIPFGIGMIFYGNIAGGIFVLLWHL 251

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           + +  +D  LRP LV    +L        +  G+   G  G+ IGPVLM LI
Sbjct: 252 LVVTNIDNVLRPILVPRDARLNSALMLLSVFAGITMFGPWGIIIGPVLMILI 303


>gi|237750422|ref|ZP_04580902.1| amaA [Helicobacter bilis ATCC 43879]
 gi|229373952|gb|EEO24343.1| amaA [Helicobacter bilis ATCC 43879]
          Length = 349

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 130/276 (47%), Gaps = 29/276 (10%)

Query: 103 GIPVPRWLSDIPGGMWASELWTKHLS------HPQSLKILSE-TFLKTNGIDFIPRFASR 155
           G+ +  WLS +      S+L  ++L+      H     +L+E +F K +GI  + + +S 
Sbjct: 82  GVKMINWLS-LQSMFDQSKLALQNLAEKLPFIHDYLPSLLNEISFAKISGI--VLKLSSI 138

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV---IR 212
            G   L + +    +I+ LF F+  G    ++L +  + + P    +I+ +  +V   +R
Sbjct: 139 VGENGLKFIIDGFVIIVFLFVFFYFG----ERLYAYMKRILPFEEAQINEVAMEVSGTLR 194

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLI 271
             FL      + +G   G   +  G    V LG++  I +MIP  G  I +  +   L+ 
Sbjct: 195 LVFLSTFFNVVMQGTAFGIIAYFFGFDG-VLLGILYGICSMIPIVGGVIVWLPICAILVY 253

Query: 272 KGNIFNATCLFLWGAIEL-FIVDKTLRPFLVG--------GPIKLPFLPTFFGLVGGVRT 322
           +G+   A  + L+ A+ + FI+D  ++P+L+G         P+++     FF ++ G+  
Sbjct: 254 QGDFKGAVIVGLYSAVFIGFIIDNIVKPWLIGIVNKRILRTPLQINEFVIFFAILAGIGA 313

Query: 323 MGLLGLFIGPVLMAL-IAVIWKESIMAIKENKEKIS 357
            G  G+ IGP + AL IA++       + +NKE I 
Sbjct: 314 FGFWGIIIGPAITALFIALLRVYEHEFVDKNKEMIC 349


>gi|289446691|ref|ZP_06436435.1| conserved membrane protein [Mycobacterium tuberculosis CPHL_A]
 gi|289419649|gb|EFD16850.1| conserved membrane protein [Mycobacterium tuberculosis CPHL_A]
          Length = 311

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 5/172 (2%)

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           +++ +AL        ++  QL+ LGE +   Y +K+  +V    R T  G  +IA  +G+
Sbjct: 97  VYVFVALLVNREKLRTLIGQLNPLGEDVTDLYLQKMGSMV----RGTVNGQFVIAACQGV 152

Query: 228 VLGSAYWLAGVPSHVAL-GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
              ++ ++AG      +  ++   +++IP G  I      I ++  GNI     + LW  
Sbjct: 153 AGAASIYIAGFHHGFFIFAIVLTALSIIPLGGGIVTIPFGIGMIFYGNIAGGIFVLLWHL 212

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           + +  +D  LRP LV    +L        +  G+   G  G+ IGPVLM LI
Sbjct: 213 LVVTNIDNVLRPILVPRDARLNSALMLLSVFAGITMFGPWGIIIGPVLMILI 264


>gi|167626468|ref|YP_001676968.1| hypothetical protein Fphi_0251 [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596469|gb|ABZ86467.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 339

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 129/292 (44%), Gaps = 34/292 (11%)

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
           +  S+FL V+  +  +C+FI P+L + YY + E+   +      +Q    +   +  IP 
Sbjct: 53  KHRSSFLLVMGIL--LCVFI-PILIVLYYAISEIVSYLQHPETLSQTFATLGDSIGKIP- 108

Query: 116 GMWASELWTKHLSH-PQSLKILSETFLKTNGIDFIP--RFASRFGMIFLDYCLSIIFMII 172
             +   +  +H     +++   S+T +   G   +P  R+     + F+   L      I
Sbjct: 109 --YIGSILQEHFDKLIKAINDDSDTIISNLG-QILPKVRYVGSTSISFITDFL------I 159

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI---RSTFLGMTIIAIGEGLVL 229
            L   Y+   S S  L+   + +    +      +   I   R   L + + A   G V+
Sbjct: 160 TLLLVYQFLVS-SSTLEKFAKKVVLKDFDDSDSFISTAIITTRRVSLAIFLTASLVGTVM 218

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIF------NATCLFL 283
              + L G+P+ + L    AI +MIP      F    +Y+LI  ++F       A  + +
Sbjct: 219 AIVFLLTGMPTPILLAFTVAIASMIP------FMVGIVYILIGASVFVVYGATKAIIILV 272

Query: 284 WG-AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
            G A+ +F  D  ++P ++   ++L F  +  G++GG++  G +G+F+GPV+
Sbjct: 273 VGFALNIF-TDNIMQPKIINKQVQLSFAASLIGILGGIQAFGFIGIFLGPVI 323


>gi|32474562|ref|NP_867556.1| permease [Rhodopirellula baltica SH 1]
 gi|32445101|emb|CAD75103.1| probable permease [Rhodopirellula baltica SH 1]
          Length = 664

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 115/250 (46%), Gaps = 24/250 (9%)

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF---ASRFGMIFLD 162
           V  W++ + GG   S+L    +++P      S   ++       PRF    S  G I + 
Sbjct: 406 VRSWMNQLLGGSLRSQL--SLIANPDEKDFSS--LIRMARESLQPRFVRLTSATGSIVVQ 461

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQL------DSLGEHLFPAYWKKISRIVPKVIRSTFL 216
               ++ ++++++FF  DG  + + L      D   EH     + + SR V        L
Sbjct: 462 VIFGLVILVVSVYFFLIDGPVMIRTLMRLSPMDDAYEHQLLTEFDRTSRAV-------VL 514

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYL-LIKG 273
                A+ +G++    +WL G    V L  +T++MA++P  G A + +   +++L L+  
Sbjct: 515 ASVASAVVQGILATIGFWLCGFDQIVLLLFLTSVMALVPFLGAASV-WVPCALWLGLVDQ 573

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
               A  L ++GA  +  +D  ++ +++ G  +L  L     ++GGV   G +G+ +GP+
Sbjct: 574 RWIAAAFLAIYGAAVVSSIDNVIKVYVLHGRSQLHPLFALLSVIGGVSVFGPIGILVGPM 633

Query: 334 LMALIAVIWK 343
           ++  +  + +
Sbjct: 634 VVVFLQTLLE 643


>gi|327543396|gb|EGF29821.1| permease [Rhodopirellula baltica WH47]
          Length = 645

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 115/250 (46%), Gaps = 24/250 (9%)

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF---ASRFGMIFLD 162
           V  W++ + GG   S+L    +++P      S   ++       PRF    S  G I + 
Sbjct: 387 VRSWMNQLLGGSLRSQLSL--IANPDEKDFSS--LIRMARESLQPRFVRLTSATGSIVVQ 442

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQL------DSLGEHLFPAYWKKISRIVPKVIRSTFL 216
               ++ ++++++FF  DG  + + L      D   EH     + + SR V        L
Sbjct: 443 VIFGLVILVVSVYFFLIDGPVMIRTLMRLSPMDDAYEHQLLTEFDRTSRAV-------VL 495

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYL-LIKG 273
                A+ +G++    +WL G    V L  +T++MA++P  G A + +   +++L L+  
Sbjct: 496 ASVASAVVQGILATIGFWLCGFDQIVLLLFLTSVMALVPFLGAASV-WVPCALWLGLVDQ 554

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
               A  L ++GA  +  +D  ++ +++ G  +L  L     ++GGV   G +G+ +GP+
Sbjct: 555 RWIAAAFLAIYGAAVVSSIDNVIKVYVLHGRSQLHPLFALLSVIGGVSVFGPIGILVGPM 614

Query: 334 LMALIAVIWK 343
           ++  +  + +
Sbjct: 615 VVVFLQTLLE 624


>gi|197285279|ref|YP_002151151.1| hypothetical protein PMI1420 [Proteus mirabilis HI4320]
 gi|227355709|ref|ZP_03840102.1| inner membrane protein [Proteus mirabilis ATCC 29906]
 gi|194682766|emb|CAR42995.1| putative membrane protein [Proteus mirabilis HI4320]
 gi|227164028|gb|EEI48925.1| inner membrane protein [Proteus mirabilis ATCC 29906]
          Length = 370

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 68/127 (53%), Gaps = 1/127 (0%)

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           IR+  LG+ + A+ + ++ G    ++GVP    L V+  I  +   G         ++L 
Sbjct: 211 IRAVALGVVLTALIQAVIGGIGLGISGVPYATVLTVLMFICCLAQLGPLFVLVPSILWLF 270

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             G+      + +WG I +  +D  LRPFL+     LP +    G++GG+ T+G++GLFI
Sbjct: 271 WTGDTTWGIVMIIWGGI-VATMDGVLRPFLIKMGADLPMVLILTGVIGGILTLGMIGLFI 329

Query: 331 GPVLMAL 337
           GPV++A+
Sbjct: 330 GPVVLAV 336


>gi|153832184|ref|ZP_01984851.1| hipothetical membrane protein [Vibrio harveyi HY01]
 gi|148871495|gb|EDL70350.1| hipothetical membrane protein [Vibrio harveyi HY01]
          Length = 381

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 97/202 (48%), Gaps = 14/202 (6%)

Query: 165 LSIIFMIIAL-FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
           LSII + IA  F  Y +  SI+  L ++         K  + ++   I+S  LG+  +A 
Sbjct: 173 LSIISLAIAAGFMTYSE--SIASGLRTVAVRTAGDNAKSWTTLIAATIKSVLLGVVGVAA 230

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
            + L++G+ +++ GVP+   L +I  I+ +    A ++   V  Y+ +  +   AT   +
Sbjct: 231 IQALLIGAGFFIFGVPAAGLLTLILMILCIAQLPALLAVLPVVGYMYMTNDTSTATMFTV 290

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           W  +   + +   +P L+G  + +P      G +GG+   G++GLF+G V++A    IW 
Sbjct: 291 W-VVVAALSENLFKPMLMGRGVDVPMPVILLGAIGGMLFYGIVGLFLGAVILA----IWY 345

Query: 344 E------SIMAIKENKEKISSN 359
           E      SI   ++ +E +   
Sbjct: 346 ELFVWWLSIEKAQQQEESLREE 367


>gi|167765242|ref|ZP_02437355.1| hypothetical protein BACSTE_03630 [Bacteroides stercoris ATCC
           43183]
 gi|167696870|gb|EDS13449.1| hypothetical protein BACSTE_03630 [Bacteroides stercoris ATCC
           43183]
          Length = 336

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 93/200 (46%), Gaps = 12/200 (6%)

Query: 141 LKTNGIDFIPRFASRFGMIFL----DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           L  N + F      R G   +     + +++  ++  L+F    G  + Q ++     L 
Sbjct: 119 LSGNSLSFFISSLPRIGQTLMGGISSFIVNMFVLVFVLYFMLIGGKKMEQYVN----ELL 174

Query: 197 PAYWKKISRIVPKV---IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           P        IV ++   +RS  +G+ ++A+ +G V    YW+   P+ +  G +T   ++
Sbjct: 175 PFNETNTQEIVHEINMIVRSNAIGIPLLAVIQGGVAMLGYWIFDAPNILFSGFLTGFASI 234

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP  G  + +  +++Y+ + GN F A  L ++G++ +  +D  +R  +      +  L T
Sbjct: 235 IPMAGTALVWIPIAVYMALIGNWFQAIGLVIFGSLVISQLDNLIRFVIQKKMADIHPLIT 294

Query: 313 FFGLVGGVRTMGLLGLFIGP 332
            FG+V G+   G +G+  GP
Sbjct: 295 VFGVVIGLSLFGFMGVIFGP 314


>gi|189468029|ref|ZP_03016814.1| hypothetical protein BACINT_04423 [Bacteroides intestinalis DSM
           17393]
 gi|189436293|gb|EDV05278.1| hypothetical protein BACINT_04423 [Bacteroides intestinalis DSM
           17393]
          Length = 346

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 85/174 (48%), Gaps = 8/174 (4%)

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP---AYWKKISRIVPKVIRSTFLGMT 219
           + +++  ++  L+F    G    Q+++     + P   +    + R +  ++ S  +G+ 
Sbjct: 155 FAVNLFVLVFVLYFMLIGG----QKMEQYISDILPFNKSNTDHVVREIKMIVHSNAVGIP 210

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNA 278
           ++AI +G V    YW   VP  +  G +T +  +IP  G  + +  +++Y+ + G++FN 
Sbjct: 211 LLAIIQGGVAMIGYWFFDVPDILLTGFLTCLATVIPMVGTALVWFPIAVYMALSGDLFNG 270

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
             L ++G + +  +D  +R  L      +  L T FG+V G+   G +G+  GP
Sbjct: 271 IGLAIFGTLIISQLDNLIRFILQKRMADIHPLITIFGVVIGLSLFGFMGVIFGP 324


>gi|259046341|ref|ZP_05736742.1| transport protein [Granulicatella adiacens ATCC 49175]
 gi|259036978|gb|EEW38233.1| transport protein [Granulicatella adiacens ATCC 49175]
          Length = 389

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 139/337 (41%), Gaps = 49/337 (14%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+     PV    +I +   PIY   ++KK      + ++  V V+ +FI+ +  L    
Sbjct: 52  FISAIGVPVACGAVIYYLVKPIYDYLLNKKVPKGIAI-LLVMVGVIVIFIMIITSLVPII 110

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +LVS++          P +   I      SE   K +      + + E F K N 
Sbjct: 111 QKQLLDLVSQL----------PYYYQII------SEQVEKFM-QTGFFETIQEQFNKINT 153

Query: 146 IDFIPRFASRFGMIFL--------------DYCLSIIFMIIALFFFYRDGFSI----SQQ 187
            DFI     R   I                D  ++I+ M + L++  +DG  +    ++ 
Sbjct: 154 -DFIQSITERLNGILNFTFSGIGSVVGIIGDIVITIMTMPVILYYLLKDGNKVIPFVTRM 212

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
             +  +H       ++++ V   IR    G   +AI  G      Y L G+P  V +G+I
Sbjct: 213 FPTRSQHKISVMLNEMNQQVSSYIR----GQITVAICVGFTYIIGYTLIGLPYGVTIGMI 268

Query: 248 TAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATC---LFLWGAIELFIVDKTLRPFLVGG 303
             ++ +IP  G+ I  T      LI G + N T    +FL   IE  I  + L+P ++G 
Sbjct: 269 AGLLTIIPYLGSIIGLTPA----LIIGFVTNPTLALHVFLVFVIEQLIESRVLQPLILGS 324

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +K+  +     L+   +  GL+GL I   + A++ V
Sbjct: 325 SLKMHPVTILIILLAAGKMFGLVGLLIAVPVYAVVKV 361


>gi|224370719|ref|YP_002604883.1| putative permease [Desulfobacterium autotrophicum HRM2]
 gi|223693436|gb|ACN16719.1| putative permease [Desulfobacterium autotrophicum HRM2]
          Length = 386

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 102/218 (46%), Gaps = 24/218 (11%)

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDG-------FSISQQLDSLGEHLFPAYWKKISR 205
           AS    I   +CL    M+I +F+ + DG       + IS   D   E LF     K   
Sbjct: 175 ASNVFKIIFYFCL----MLIVVFYLFIDGARFVDYIYDISPLADEHNEKLFC----KFKE 226

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTA 264
           +   V+    LG  I    +G+V G A+++ G+ S    GVI   +A +P  G  +    
Sbjct: 227 MAGAVLVGNGLGGLI----QGVVGGGAFFMLGLASPFLWGVIMGFLAFLPILGIGVVLIP 282

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             + L++K  +     + +  A+  + ++   +P +VG  +K+  L  FF ++GG+   G
Sbjct: 283 TGLILMLKERMAAGIFILVLYAVLSWGIEYVFKPKVVGDRVKMHPLVVFFSIIGGLEIYG 342

Query: 325 LLGLFIGPVLMAL---IAVIWKESIMAIKENKEKISSN 359
           +LG+  GP+++ L   +A I+  +  AI E  +++  N
Sbjct: 343 ILGIIYGPLIITLFLTLADIYFANFQAIVE-PDRVKGN 379


>gi|55380329|ref|YP_138178.1| hypothetical protein rrnB0307 [Haloarcula marismortui ATCC 43049]
 gi|55233054|gb|AAV48472.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 318

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 3/132 (2%)

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGAPISFTA 264
           +  V+     G   +AI +G+V G      GVP+ +    +  ++AM+P  G  P+   A
Sbjct: 166 IDDVMLGVLFGHVFVAIVQGIVAGVGLAATGVPNAMFWTAVMVVLAMVPLIGTIPVWGGA 225

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           V IYL        A  LFL+  I + + D  LRPF V    KL       G++GG    G
Sbjct: 226 V-IYLYATDEPLLAVGLFLYSVIIVGLTDDYLRPFAVDRYAKLNPAVILLGILGGAYAFG 284

Query: 325 LLGLFIGPVLMA 336
           ++GL  GPV++ 
Sbjct: 285 VMGLLFGPVVLG 296


>gi|306783812|ref|ZP_07422134.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
 gi|308331376|gb|EFP20227.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
          Length = 385

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 5/172 (2%)

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           +++ +AL        ++  QL+ LGE +   Y +K+  +V    R T  G  +IA  +G+
Sbjct: 171 VYVFVALLVNREKLRTLIGQLNLLGEDVTDLYLQKMGSMV----RGTVNGQFVIAACQGV 226

Query: 228 VLGSAYWLAGVPSHVAL-GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
              ++ ++AG      +  ++   +++IP G  I      I ++  GNI     + LW  
Sbjct: 227 AGAASIYIAGFHHGFFIFAIVLTALSIIPLGGGIVTIPFGIGMIFYGNIAGGIFVLLWHL 286

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           + +  +D  LRP LV    +L        +  G+   G  G+ IGPVLM LI
Sbjct: 287 LVVTNIDNVLRPILVPRDARLNSALMLLSVFAGITMFGPWGIIIGPVLMILI 338


>gi|32490775|ref|NP_871029.1| hypothetical protein WGLp026 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25165981|dbj|BAC24172.1| yb1688 [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 356

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 146/309 (47%), Gaps = 19/309 (6%)

Query: 37  ALIIGFTSWPIYSSFISKKEESSTFLAVI-ATVSVMCLFIVPLLFLFYYGMLEMKELVSK 95
           A II  ++WP++   I K   +S FL+++   + ++C FI P+  +         +++S 
Sbjct: 41  ASIIVISTWPLFIR-IKKFLYNSYFLSILLMEMLLICFFIFPVFIVSTSFFKNFSKMISL 99

Query: 96  VVLANQHGIPVPRWLSDIP--GGMWASEL----WTKHLSHPQSLKILSETFLKTNGIDFI 149
           ++  +Q+       +  IP  G    + +    + K+LS  + L    E ++ T+    I
Sbjct: 100 IITFDQYIFSNLLLIKKIPIIGNKLFNTINILIYEKNLSLYEKL----EPYI-THITKII 154

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
               +    +F +  L+++F I    F Y  G  I++ +     ++     K++  +  K
Sbjct: 155 LSNLTLIWNLFFNCLLTVLFSI----FLYFKGNYINKFIKIFIYYIDDIKGKELVVLAEK 210

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            IRS F+ + + +I + ++     +++ VP    L ++  I  +   G    F  + ++ 
Sbjct: 211 SIRSVFVSVILASIIQTILSSIGLFISNVPFKSILIILIFIFCITQLGIFPIFIPIILWF 270

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP-IKLPFLPTFFGLVGGVRTMGLLGL 328
             K N   +T LF+W  + +F +D  L+  L+    IKL  L   FG++GG  + G++G+
Sbjct: 271 YYKENYIFSTILFVWSCL-VFALDNILKQILIKSIGIKLHNLLIIFGILGGFLSFGMIGI 329

Query: 329 FIGPVLMAL 337
           FIGP ++ +
Sbjct: 330 FIGPTILTI 338


>gi|120437128|ref|YP_862814.1| membrane protein, UPF0118 [Gramella forsetii KT0803]
 gi|117579278|emb|CAL67747.1| membrane protein, UPF0118 [Gramella forsetii KT0803]
          Length = 339

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 1/125 (0%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSI 267
           ++++S  LG+ ++A+ +G++    + + GVP      VITAI +MIP  G  I      I
Sbjct: 191 QLVKSNALGIPLVALVQGIIALIGFLIFGVPDPFFWFVITAIGSMIPFIGTAIGILPACI 250

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            L  +GN F A  L ++G + +   D  +R +++     +  L T FG++ GV   G +G
Sbjct: 251 LLFAQGNDFQAISLLIYGFVVVGSTDNIIRLYVLEKLASVHPLITLFGVIVGVPLFGFIG 310

Query: 328 LFIGP 332
           L  GP
Sbjct: 311 LIFGP 315


>gi|51245086|ref|YP_064970.1| hypothetical protein DP1234 [Desulfotalea psychrophila LSv54]
 gi|50876123|emb|CAG35963.1| conserved hypothetical membrane protein [Desulfotalea psychrophila
           LSv54]
          Length = 356

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 1/113 (0%)

Query: 232 AYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
           ++ +AG+      G + A+M++IP  G  I +    I + +  N F    L +   +   
Sbjct: 226 SFAIAGIQGPFFWGTVMAVMSVIPAVGTAIIWGPALIIIALMSNFFGVAVLAIGCGLIAG 285

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            +D  LRP LVG   ++  L   FG +GG+   GLLG+ IGP++ AL   +W+
Sbjct: 286 NIDNFLRPRLVGKDTEMHDLFVLFGTLGGISMFGLLGIIIGPLIAALFLTLWQ 338


>gi|159029048|emb|CAO90034.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 358

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 91/188 (48%), Gaps = 9/188 (4%)

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
            A+  G+  L + +SI+    AL    ++   ++  ++ L E + P     ++ +    +
Sbjct: 153 LATSTGLTVLKFIVSILIAA-ALTLSAKN---LTHLMNRLAEKIAPGRGIALASLTASTV 208

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R+   G+  +AI + L++G      G P+   L  +T I+ ++  G  +      I+  +
Sbjct: 209 RNVSRGIIGVAIIQSLLIGIGLVTVGTPAAGLLTFLTLILGILQIGPGLIVLGALIHAWV 268

Query: 272 KGNIFNATCLF--LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
              + N+  L   LW  I   +VD  L+P L+G  + +P +    G+ GGV   G++GLF
Sbjct: 269 --TLPNSIALLFTLW-MIPATLVDNFLKPILMGRGLPIPMVVILLGVFGGVIAYGIIGLF 325

Query: 330 IGPVLMAL 337
           +GPVL+ L
Sbjct: 326 VGPVLLGL 333


>gi|257095745|ref|YP_003169386.1| hypothetical protein CAP2UW1_4216 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048269|gb|ACV37457.1| protein of unknown function UPF0118 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 361

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 119/263 (45%), Gaps = 9/263 (3%)

Query: 101 QHGIPV--PRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFG 157
           +HG+P   P WL  +P  G   +  W + +   + +  L   FL     D   + A    
Sbjct: 99  EHGLPATPPAWLISMPIVGTDIASYWHELIESREEMNNLLRQFL-----DPTRKLALAAV 153

Query: 158 MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG 217
            +F    L ++ +I  +FF +RD     + L +    L     +++  +V   +     G
Sbjct: 154 ALFAQGLLQLVLVIFFVFFIFRDAHIYVEALHTGSRMLAGDLGERMLALVEGTVTGVMAG 213

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIF 276
           +   A  + +V    + +AGVP  V L V T   +M+P  GA + +   +++L  +G   
Sbjct: 214 IVGTAAAQAVVGMVGFIIAGVPGIVILTVATFFFSMVPVVGATLIWLGAAVWLYNEGQAG 273

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            A  + LWG   +  VD  L+P L+     LP L    G+ GGV   G +GLF+GP L+A
Sbjct: 274 WAVFMVLWGMFGISSVDNFLKPVLISRTASLPLLLIVVGVFGGVLVFGFIGLFLGPTLLA 333

Query: 337 LIAVIWKESIMAIKENKEKISSN 359
           L  V+ +E +     + E+ +S 
Sbjct: 334 LGQVLIREWLAHAGPDVERPASR 356


>gi|268592592|ref|ZP_06126813.1| putative membrane protein [Providencia rettgeri DSM 1131]
 gi|291312006|gb|EFE52459.1| putative membrane protein [Providencia rettgeri DSM 1131]
          Length = 371

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 69/132 (52%), Gaps = 1/132 (0%)

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
           +  + IR+  LG+ + A+ + +V G    L+G+     L V+  I  +   G  +     
Sbjct: 207 LAAQSIRAVALGVVVTALIQAIVGGIGLALSGIGYAAILTVLLFICCVAQLGPLLIMVPS 266

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            I+L   G+      L +W A+ +  +D  LRP+L+     LP +    G++GG+ + G+
Sbjct: 267 VIWLFWTGDTTWGIILAIWAAV-VATMDGVLRPWLIKMGADLPMVLILVGVIGGILSFGM 325

Query: 326 LGLFIGPVLMAL 337
           +GLFIGPV++A+
Sbjct: 326 IGLFIGPVVLAV 337


>gi|224538267|ref|ZP_03678806.1| hypothetical protein BACCELL_03158 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520127|gb|EEF89232.1| hypothetical protein BACCELL_03158 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 348

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 85/174 (48%), Gaps = 8/174 (4%)

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP---AYWKKISRIVPKVIRSTFLGMT 219
           + +++  ++  L+F    G    Q+++     + P   A  + +   +  ++ S  +G+ 
Sbjct: 155 FAVNLFVLVFVLYFMLIGG----QRMEKYISEILPFSEANTEHVVHDIKMIVHSNAVGIP 210

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNA 278
           ++AI +G V    YW   VP  +  G +T +  +IP  G  + +  +++Y+ + G++FN 
Sbjct: 211 LLAIIQGGVAMIGYWFFDVPDILLTGFLTCLATVIPMVGTALVWFPIAVYMALSGDLFNG 270

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
             L ++G + +  +D  +R  L      +  L T FG+V G+   G +G+  GP
Sbjct: 271 IGLAIFGTLIISQLDNLIRFILQKKMADIHPLITIFGVVIGLSLFGFMGVIFGP 324


>gi|227111729|ref|ZP_03825385.1| putative inner membrane protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 369

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 142/328 (43%), Gaps = 16/328 (4%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I  +I+   + ++ F      A ++   +WP+   F +      +   ++ T+ ++ LFI
Sbjct: 22  ITIMIIACFWVVQPFILGFAWACMVVIATWPLLIKFQALLWGRRSLAVLVMTLLLILLFI 81

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS--- 132
           VP+  L    +     L+S          P   WL+ IP  +   +L+    +  QS   
Sbjct: 82  VPIAVLVSSVVENSSALMSWGARQENFSPPTLEWLTSIP--LVGEKLFNSWQALLQSGGS 139

Query: 133 --LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                +   F KT    ++   A+  G   +   L +IF  +     Y  G ++++ +  
Sbjct: 140 GLFAKVQPYFGKTA--TWLVAQAAHVGRFLMHCSLMLIFSAL----LYYKGEAVAKAVRH 193

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
               L          +  + IR+  LG+ + AI + ++ G    L+G+P    L V+  +
Sbjct: 194 FAIRLGQERGDAAVILAAQSIRAVALGVVVTAIVQSVLGGIGLGLSGIPYTTLLTVLMFL 253

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
             +   G  P+   A+ I+L   G+    T L +W  + +  +D  +RP L+     LP 
Sbjct: 254 CCLAQLGPLPVLIPAI-IWLYWTGDNTWGTILLVWSCV-VGTIDNVIRPVLIKMGADLPM 311

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           L    G++GG+   G++G+FIGPV++A+
Sbjct: 312 LLILSGVIGGLLAFGMIGIFIGPVVLAV 339


>gi|283954986|ref|ZP_06372493.1| hypothetical protein C414_000350024 [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793484|gb|EFC32246.1| hypothetical protein C414_000350024 [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 347

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 129/293 (44%), Gaps = 36/293 (12%)

Query: 61  FLAVIATVSVMC-LFIVPLLFLFYYGMLEMKELVSK--VVLANQHGIPVPRWLSDIPGGM 117
           FLA I T + M  LF  P    F Y M+E+ +      + L  Q    V  +   +P   
Sbjct: 56  FLASILTTACMVLLFFTP----FVYTMIELAKASKNFDINLVTQTLDYVKNYQFTLPESF 111

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                   +  +P+  + L+   L +     I  +AS F      + + ++  +I +F+F
Sbjct: 112 --------NFLYPKIKEFLASIDLNSISKQ-ILSYASSFTKSGAKFLVDMV--LICVFYF 160

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           + + +    +L    + + P   K++  +   V  V+      M I+AI +G + G    
Sbjct: 161 FANLY--GTELVIYLKSIIPIDKKELDDVLSEVGNVMAVVLYSMVIVAIFQGTLFGLITM 218

Query: 235 LAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FI 291
             G    + +GVI A+ ++IP  GGA I +  VS+Y     N+ +A  +F++  I + FI
Sbjct: 219 FYGYDG-ILMGVIFAVSSLIPAIGGALI-YVPVSLYEFASNNLNSALVIFIYSVIVISFI 276

Query: 292 VDKTLRPF--------LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            D  ++P         LV  P K+  L  F  ++ G+ T G  G+ +GP ++ 
Sbjct: 277 ADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFGFWGIILGPAILT 329


>gi|323492023|ref|ZP_08097188.1| hypothetical protein VIBR0546_07984 [Vibrio brasiliensis LMG 20546]
 gi|323313752|gb|EGA66851.1| hypothetical protein VIBR0546_07984 [Vibrio brasiliensis LMG 20546]
          Length = 361

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 157/352 (44%), Gaps = 49/352 (13%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +   ++ A II    +PI+     K  +    +++++ + +  + + PLLF+F       
Sbjct: 32  YINSIVMAFIISLLMFPIHEWIERKLPKHKNTVSLLSCIVLTFIIVFPLLFVF------- 84

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS--ETFLKTNGID 147
             +V +    +Q+   V +W++   GG+           HP  +K LS   T+L  + I+
Sbjct: 85  AAIVQQGSAFSQN---VYQWVTH--GGI------QTIFEHPWVVKSLSLVNTYLPFDTIE 133

Query: 148 ------FIPRFASRFGMIFL-----------DYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                  + +FA+ FG   +           ++ +    M+  LFF  RD      ++ S
Sbjct: 134 PQEIAQKVAQFATSFGSNLVGISAKILGDATNFLMDFFLMLFVLFFLLRD----HDKIIS 189

Query: 191 LGEHLFP---AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              H+ P   +   K+   V +V +S  +G  + AI +G   G   WLAG P  +  G +
Sbjct: 190 AIRHILPLSRSQEDKLLDEVEQVAKSAVMGSFLTAIAQGFAGGIGMWLAGFPG-LFWGTM 248

Query: 248 TAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
               + IP  G  + +   +IYL + G+   A  L +W    +  +D  LRPFL+ G   
Sbjct: 249 MGFASFIPVVGTALIWIPAAIYLFLTGDTTWAIFLTVWSVAVVGSIDNLLRPFLMQGSAG 308

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV---IWKESIMAIKENKEK 355
           +  L  FF L+GG+   GL+GL  GP++ A+  V   I++E      + +++
Sbjct: 309 MNTLMIFFSLLGGLHLFGLIGLIYGPIIFAVTMVLFNIYEEEFQGFLDQQDR 360


>gi|156977852|ref|YP_001448759.1| hypothetical protein VIBHAR_06643 [Vibrio harveyi ATCC BAA-1116]
 gi|156529446|gb|ABU74531.1| hypothetical protein VIBHAR_06643 [Vibrio harveyi ATCC BAA-1116]
          Length = 365

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 97/202 (48%), Gaps = 14/202 (6%)

Query: 165 LSIIFMIIAL-FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
           LSII + IA  F  Y +  SI+  L ++         K  + ++   I+S  LG+  +A 
Sbjct: 157 LSIISLAIAAGFMTYSE--SIASGLRTVAVRTAGDNAKSWTTLIAATIKSVLLGVVGVAA 214

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
            + L++G+ +++ GVP+   L +I  I+ +    A ++   V  Y+ +  +   AT   +
Sbjct: 215 IQALLIGAGFFIFGVPAAGLLTLILMILCIAQLPALLAVLPVFGYMYMTNDTSTATMFTV 274

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           W  +   + +   +P L+G  + +P      G +GG+   G++GLF+G V++A    IW 
Sbjct: 275 W-VVVAALSENLFKPMLMGRGVDVPMPVILLGAIGGMLFYGIVGLFLGAVILA----IWY 329

Query: 344 E------SIMAIKENKEKISSN 359
           E      SI   ++ +E +   
Sbjct: 330 ELFVWWLSIEKAQQQEESLREE 351


>gi|255535413|ref|YP_003095784.1| hypothetical protein FIC_01274 [Flavobacteriaceae bacterium
           3519-10]
 gi|255341609|gb|ACU07722.1| hypothetical protein FIC_01274 [Flavobacteriaceae bacterium
           3519-10]
          Length = 354

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 156/337 (46%), Gaps = 34/337 (10%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +F++ + L+ L  F + VL A+ +   +   Y     +K+ +S  +  +    V+  F V
Sbjct: 19  LFLVALILFELNYFMSGVLGAVTLYVLTRNFYLRLTEEKKWNSNLVITLIIFLVIITFAV 78

Query: 77  PLLFLFYYGMLEMKELVS--KVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           PL  +    + ++ E+VS  + ++   + + V             +  +TK      S +
Sbjct: 79  PLWIILEILIPKINEIVSDREAIVEKYNAVRV----------FLENNQYTKRFDLQLSNE 128

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ--LDSLG 192
            + +   K   I +IP   +  G +     L  IF  +ALF  Y   F + Q   ++   
Sbjct: 129 RIMQAVNKV--ISYIPSTLNWVGQM-----LGNIF--VALFILY---FMLKQSRIMEQKF 176

Query: 193 EHLFPAYWKKISRIVPK---VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           + L P   +     +     +IRS   G+ I+ + +G++    Y++ GV + +  G++T 
Sbjct: 177 KELLPVSRESKKYFIQHNAALIRSNAYGIPILGLSQGIIAIIGYYIFGVENAIFWGLLTG 236

Query: 250 IMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI--VDKTLRPFLVGGPIK 306
             +++P  G  I +  + IY +  G++ N   LFL G   LF+  +D  LR  L+     
Sbjct: 237 AASIVPVVGTMIVYLPICIYQVATGDVNNG--LFLAGFCLLFVGGIDNVLRLTLLKKMAD 294

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +  L T FG++ G++  G++GL  GPVL+++  ++++
Sbjct: 295 IHPLVTVFGVLLGLQMFGVMGLVFGPVLLSMPGILYR 331


>gi|218263328|ref|ZP_03477475.1| hypothetical protein PRABACTJOHN_03160 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222806|gb|EEC95456.1| hypothetical protein PRABACTJOHN_03160 [Parabacteroides johnsonii
           DSM 18315]
          Length = 341

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 71/138 (51%), Gaps = 1/138 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAP 259
           K +   +  ++ S  +G+ ++AI +GL+    YW+  VPS    G +T    +IP  G  
Sbjct: 187 KNVLNEINMIVTSNAIGIPLLAIIQGLIALLGYWIFDVPSPFLFGFLTCFATIIPVVGTA 246

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +  +++Y+++ G+  NA  L  +  I +  VD  +R  L         L T FG++ G
Sbjct: 247 LVWLPLALYMVLTGDWVNAAGLTAYALIIITNVDNLIRFILQKKMADTHPLITIFGVIIG 306

Query: 320 VRTMGLLGLFIGPVLMAL 337
           +   G +G+  GP+L+++
Sbjct: 307 LSLFGFMGIIFGPLLISI 324


>gi|45358583|ref|NP_988140.1| hypothetical protein MMP1020 [Methanococcus maripaludis S2]
 gi|44921341|emb|CAF30576.1| Protein of unknown function UPF0118 [Methanococcus maripaludis S2]
          Length = 334

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 98/196 (50%), Gaps = 12/196 (6%)

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI----VPKVIRSTFLGMTI 220
           + ++F+    F+F +DG    +  DS   ++ P   K+ + +    + K +++ F+G  +
Sbjct: 144 MKLLFLSFMTFYFLKDG---DKLTDSFLIYV-PEDKKRNTALFLSEIHKALKTLFIGNAV 199

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNA 278
            ++  G++    YWL G+P+ + LG ++ I+ ++P  GG  I +  +++Y L+ G I   
Sbjct: 200 TSVIVGIISIIGYWLIGIPNPITLGALSGILNILPVVGGWTI-YVPLTVYYLLTGEIAKG 258

Query: 279 TCLFLWGAIELFIV-DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
             L L+G I L +  D  +RP ++     L         + G    G+ GL IGP+++A 
Sbjct: 259 ILLGLFGIIFLSLAPDFAIRPRVISKDGDLHPALVLIAFLIGPLVFGIPGLAIGPIIVAT 318

Query: 338 IAVIWKESIMAIKENK 353
           +  I K   +  K+N 
Sbjct: 319 VYAIHKVRRLIEKKNN 334


>gi|269966936|ref|ZP_06181008.1| putative lipoprotein [Vibrio alginolyticus 40B]
 gi|269828419|gb|EEZ82681.1| putative lipoprotein [Vibrio alginolyticus 40B]
          Length = 361

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 155/338 (45%), Gaps = 48/338 (14%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +   ++ A II    +PI+  F  K  +     A+++ V +  + ++PLLF+F       
Sbjct: 32  YINSIVMAFIISLLMFPIHEWFEQKIPKHPNMAALLSCVVLTFIIVIPLLFVF------- 84

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP---QSLKILSETFLKTNGI 146
             +V +  + +Q+      W+++  GG+           HP   + L I++E +L  + I
Sbjct: 85  AAIVQQGSVFSQNTY---NWVTN--GGI------QDIFQHPFVIKGLAIVNE-YLPFDKI 132

Query: 147 D------FIPRFASRFGMIFL-----------DYCLSIIFMIIALFFFYRDGFSISQQLD 189
           +       I +FA+ FG   +           ++ ++   M+  LFF  RD      ++ 
Sbjct: 133 EPKAIAEKIGQFATSFGSNLVAISAKILGDATNFLMNFFLMLFVLFFLLRD----HDKII 188

Query: 190 SLGEHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           S   H+ P    +  RI   + +V +S  +G  + AI +GL  G   WLAG P  +  G 
Sbjct: 189 SAIRHILPLSRSQEDRILTEIEQVSKSAVMGSFMTAIAQGLAGGIGMWLAGFPG-LFWGT 247

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +    + IP  G  + +   + YL + G++  A  L +W  + +  +D  LRP L+ G  
Sbjct: 248 MMGFASFIPVVGTALIWIPAAAYLFLTGDMTWAIFLTVWSVVVVGSIDNLLRPLLMQGSA 307

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            +  L  FF L+GG+   GL+GL  GP++ A+  V++ 
Sbjct: 308 GMNTLMIFFSLLGGLHLFGLIGLIYGPLIFAVTMVLFN 345


>gi|255534118|ref|YP_003094490.1| hypothetical protein Phep_4237 [Pedobacter heparinus DSM 2366]
 gi|255347102|gb|ACU06428.1| protein of unknown function UPF0118 [Pedobacter heparinus DSM 2366]
          Length = 350

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 83/169 (49%), Gaps = 8/169 (4%)

Query: 197 PAYWKKISRIVPKVIRSTF---LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           P   +   R   ++  +T+   LG   IA+ +G +L   +++ G    V  GVIT  ++ 
Sbjct: 176 PFRAQNAQRFAEEMRNTTYANVLGQGFIAMVQGSLLSLCFFVLGYTDPVFWGVITTFISF 235

Query: 254 IPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +P  G P+ F   ++  +  GN F    + ++G + +  +D  LR  +      +  + T
Sbjct: 236 VPLLGPPVIFVPAALIQIANGNNFAGWAMLIFGFVVIINIDNVLRFMIAKKVGNIHPIIT 295

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMA---LIAVIWKESIMAIKENKEKISS 358
             G+V GV   G+LGL  GP+L++   L+  I++ S MA  E  E+I +
Sbjct: 296 VIGVVIGVPLFGILGLVFGPLLLSYFILLIKIYETSAMA-SERLERIKT 343


>gi|49611311|emb|CAG74758.1| putative membrane protein [Pectobacterium atrosepticum SCRI1043]
          Length = 396

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 75/357 (21%), Positives = 148/357 (41%), Gaps = 30/357 (8%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I  +I+   + ++ F      A ++   +WP+   F +      +   ++ T+ ++ LF+
Sbjct: 48  ITIMIIACFWVVQPFILGFAWACMVVIATWPMLIKFQALLWGRRSLAVLVMTLLLILLFV 107

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           VP+  L    +     L+S          P   WL+ IP  +   +L+            
Sbjct: 108 VPIAVLVSSVIDNSSALMSWGSRQENLSPPTLEWLTSIP--LVGEKLFNSW--------- 156

Query: 136 LSETFLKTNGIDFIPRFASRFGMI-------------FLDYCLSIIFMIIALFFFYRDGF 182
             +  L++ G     +    FG               FL +C S++ +  AL ++   G 
Sbjct: 157 --QALLQSGGSGLFAKVQPYFGKTATWLVAQAAHVGRFLMHC-SLMLIFSALLYY--KGE 211

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           ++++ +      L          +  + IR+  LG+ + AI + ++ G    L+G+P   
Sbjct: 212 AVAKAVRHFAIRLGRERGDAAVILAAQSIRAVALGVVVTAIVQSVLGGIGLGLSGIPYTT 271

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L V+  +  +   G  +      I+L   G+    T L +W  + +  +D  +RP L+ 
Sbjct: 272 LLTVLMFLCCLAQLGPLLVLIPAIIWLYWTGDNTWGTILLVWSCV-VGTIDNVIRPMLIR 330

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
               LP L    G++GG+   G++GLFIGPV++A+   +    +  I E +  +S N
Sbjct: 331 MGADLPMLLILSGVIGGLLAFGMIGLFIGPVVLAVSYRLLFAWMREIPEPQNLLSVN 387


>gi|289573754|ref|ZP_06453981.1| LOW QUALITY PROTEIN: conserved membrane protein [Mycobacterium
           tuberculosis K85]
 gi|289538185|gb|EFD42763.1| LOW QUALITY PROTEIN: conserved membrane protein [Mycobacterium
           tuberculosis K85]
          Length = 355

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 5/172 (2%)

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           +++ +AL        ++  QL+ LGE +   Y +K+  +V    R T  G  +IA  +G+
Sbjct: 141 VYVFVALLVNREKLRTLIGQLNPLGEDVTDLYLQKMGSMV----RGTVNGQFVIAACQGV 196

Query: 228 VLGSAYWLAGVPSHVAL-GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
              ++ ++AG      +  ++   +++IP G  I      I ++  GNI     + LW  
Sbjct: 197 AGAASIYIAGFHHGFFIFAIVLTALSIIPLGGGIVTIPFGIGMIFYGNIAWGIFVLLWHL 256

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           + +  +D  LRP LV    +L        +  G+   G  G+ IGPVLM LI
Sbjct: 257 LVVTNIDNVLRPILVPRDARLNSALMLLSVFAGITMFGPWGIIIGPVLMILI 308


>gi|91228319|ref|ZP_01262248.1| putative permease [Vibrio alginolyticus 12G01]
 gi|91188135|gb|EAS74438.1| putative permease [Vibrio alginolyticus 12G01]
          Length = 347

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 155/338 (45%), Gaps = 48/338 (14%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +   ++ A II    +PI+  F  K  +     A+++ V +  + ++PLLF+F       
Sbjct: 18  YINSIVMAFIISLLMFPIHEWFEQKIPKHPNMAALLSCVVLTFIIVIPLLFVF------- 70

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP---QSLKILSETFLKTNGI 146
             +V +  + +Q+      W+++  GG+           HP   + L I++E +L  + I
Sbjct: 71  AAIVQQGSVFSQNTY---NWVTN--GGI------QDIFQHPFVIKGLAIVNE-YLPFDKI 118

Query: 147 D------FIPRFASRFGMIFL-----------DYCLSIIFMIIALFFFYRDGFSISQQLD 189
           +       I +FA+ FG   +           ++ ++   M+  LFF  RD      ++ 
Sbjct: 119 EPKAIAEKIGQFATSFGSNLVAISAKILGDATNFLMNFFLMLFVLFFLLRD----HDKII 174

Query: 190 SLGEHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           S   H+ P    +  RI   + +V +S  +G  + AI +GL  G   WLAG P  +  G 
Sbjct: 175 SAIRHILPLSRSQEDRILTEIEQVSKSAVMGSFMTAIAQGLAGGIGMWLAGFPG-LFWGT 233

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +    + IP  G  + +   + YL + G++  A  L +W  + +  +D  LRP L+ G  
Sbjct: 234 MMGFASFIPVVGTALIWIPAAAYLFLTGDMTWAIFLTVWSVVIVGSIDNLLRPLLMQGSA 293

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            +  L  FF L+GG+   GL+GL  GP++ A+  V++ 
Sbjct: 294 GMNTLMIFFSLLGGLHLFGLIGLIYGPLIFAVTMVLFN 331


>gi|197121208|ref|YP_002133159.1| hypothetical protein AnaeK_0794 [Anaeromyxobacter sp. K]
 gi|196171057|gb|ACG72030.1| protein of unknown function UPF0118 [Anaeromyxobacter sp. K]
          Length = 364

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 8/183 (4%)

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
           + L    M+IALFFF  DG    Q+L +  +   P    +   +V    R+T   +   A
Sbjct: 161 FVLQTAMMLIALFFFLVDG----QRLIAWVDARVPLRAGQFRTLVEDFRRTTLSVVAATA 216

Query: 223 IGEGLVLGSA---YWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNA 278
              G+   +A   Y++A  P+ + L V+T ++A+IP  GA      V+      G+  + 
Sbjct: 217 ATAGIQTVTALAGYFIARAPNPIFLAVLTLLVALIPAVGATAMVLVVAALQFATGHTVSG 276

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             L +WGA  + +VD   RP+L+ G + L     FF L+GG+   G +GL +GP++   +
Sbjct: 277 IFLAVWGAAVVSLVDNVARPYLLKGGMALHGGVVFFALLGGLAAFGGIGLILGPLVATFL 336

Query: 339 AVI 341
             +
Sbjct: 337 VTV 339


>gi|119358137|ref|YP_912781.1| hypothetical protein Cpha266_2369 [Chlorobium phaeobacteroides DSM
           266]
 gi|119355486|gb|ABL66357.1| protein of unknown function UPF0118 [Chlorobium phaeobacteroides
           DSM 266]
          Length = 357

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 147/322 (45%), Gaps = 38/322 (11%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +T  + + I+  +++FI  V +  ++ F   +L A I      P+Y  F    + + +  
Sbjct: 2   DTRQSNRTILLVIVLFISAVFIAMIRYFLMALLMAAIFSALLMPLYHRFERWFQGNKSLS 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN--QHGIPVPRWLSDIPGGMWAS 120
           A +  ++++ + ++P L L   GM+  + L    + A   Q  I  P        G ++ 
Sbjct: 62  AGVTILALVLMVLLPSLALI--GMVLAQALRLSRLAAPWVQQQIHEP--------GAFSR 111

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL----DYCLSII-------F 169
            L T  L +   L++  E  LK  G      FA   G + L     + LS +       F
Sbjct: 112 TLET--LPYYHELEVYREDILKKIG-----EFAGTAGNMLLGAISSFTLSAVNELFLLFF 164

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK---VIRSTFLGMTIIAIGEG 226
            +  +FFF +DG  I   LD +  +L P      SR++ K   V R+T  G  ++ + +G
Sbjct: 165 FLYTMFFFLKDGREI---LDKMLSYL-PLTEGVKSRLLEKFLSVTRATLKGSVVVGLVQG 220

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWG 285
            + G A  LAG+ S +  G I  +++ IP  G+P+ +    IYLL+ G    A  + L+ 
Sbjct: 221 TLAGLALHLAGIDSALFWGAIMTLLSFIPVLGSPLVWVPAVIYLLLIGQYPQALGVLLFC 280

Query: 286 AIELFIVDKTLRPFLVGGPIKL 307
           +I +  +D  LRP L+G   K+
Sbjct: 281 SIIVGQIDNILRPILIGRDTKM 302


>gi|161501878|ref|YP_049952.2| putative inner membrane protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 370

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 77/357 (21%), Positives = 149/357 (41%), Gaps = 30/357 (8%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I  +I+   + ++ F      A ++   +WP+   F +      +   ++ T+ ++ LF+
Sbjct: 22  ITIMIIACFWVVQPFILGFAWACMVVIATWPMLIKFQALLWGRRSLAVLVMTLLLILLFV 81

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           VP+  L    +     L+S          P   WL+ IP       +  K  +  Q+L  
Sbjct: 82  VPIAVLVSSVIDNSSALMSWGSRQENLSPPTLEWLTSIP------LVGEKLFNSWQAL-- 133

Query: 136 LSETFLKTNGIDFIPRFASRFGMI-------------FLDYCLSIIFMIIALFFFYRDGF 182
                L++ G     +    FG               FL +C S++ +  AL ++   G 
Sbjct: 134 -----LQSGGSGLFAKVQPYFGKTATWLVAQAAHVGRFLMHC-SLMLIFSALLYY--KGE 185

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           ++++ +      L          +  + IR+  LG+ + AI + ++ G    L+G+P   
Sbjct: 186 AVAKAVRHFAIRLGRERGDAAVILAAQSIRAVALGVVVTAIVQSVLGGIGLGLSGIPYTT 245

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L V+  +  +   G  +      I+L   G+    T L +W  + +  +D  +RP L+ 
Sbjct: 246 LLTVLMFLCCLAQLGPLLVLIPAIIWLYWTGDNTWGTILLVWSCV-VGTIDNVIRPMLIR 304

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
               LP L    G++GG+   G++GLFIGPV++A+   +    +  I E +  +S N
Sbjct: 305 MGADLPMLLILSGVIGGLLAFGMIGLFIGPVVLAVSYRLLFAWMREIPEPQNLLSVN 361


>gi|260204344|ref|ZP_05771835.1| hypothetical protein MtubK8_08558 [Mycobacterium tuberculosis K85]
          Length = 342

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 5/172 (2%)

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           +++ +AL        ++  QL+ LGE +   Y +K+  +V    R T  G  +IA  +G+
Sbjct: 128 VYVFVALLVNREKLRTLIGQLNPLGEDVTDLYLQKMGSMV----RGTVNGQFVIAACQGV 183

Query: 228 VLGSAYWLAGVPSHVAL-GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
              ++ ++AG      +  ++   +++IP G  I      I ++  GNI     + LW  
Sbjct: 184 AGAASIYIAGFHHGFFIFAIVLTALSIIPLGGGIVTIPFGIGMIFYGNIAWGIFVLLWHL 243

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           + +  +D  LRP LV    +L        +  G+   G  G+ IGPVLM LI
Sbjct: 244 LVVTNIDNVLRPILVPRDARLNSALMLLSVFAGITMFGPWGIIIGPVLMILI 295


>gi|239905742|ref|YP_002952481.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
 gi|239795606|dbj|BAH74595.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
          Length = 394

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 88/183 (48%), Gaps = 5/183 (2%)

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
           +    + +++ LF+F      + + L  L   L  +  ++++  +  V RS  +G     
Sbjct: 204 FAAQTVMLVLFLFYFLSQAEQVVRGLRLL-SPLRRSQEQELTERLKTVTRSILVGGAAAG 262

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATC 280
           + +GL      WL G+   +  G +  + ++IP  G   I   A+ +YLL  G +  A  
Sbjct: 263 LSQGLATMLGLWLVGI-DPLFWGFVALLASLIPVVGTTLIHVPAI-VYLLSLGAMGKAVF 320

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           L LW  + +  VD  +RPF +    +LP L  F  ++GGV   G LGL  GPV M+L  V
Sbjct: 321 LTLWWLVVVSTVDNVVRPFFIRDGAQLPLLLIFVAIIGGVLLFGPLGLIYGPVSMSLCLV 380

Query: 341 IWK 343
           +++
Sbjct: 381 VFQ 383


>gi|283785082|ref|YP_003364947.1| putative outer membrane protein [Citrobacter rodentium ICC168]
 gi|282948536|emb|CBG88126.1| putative outer membrane protein [Citrobacter rodentium ICC168]
          Length = 370

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 6/133 (4%)

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLL 270
           R+  LG+ + A+ + ++ G    ++GVP    L V+  +  ++  G  P+   A+ I+L 
Sbjct: 212 RAVALGVVVTALVQAVLGGIGLAISGVPYATLLTVVMILSCLVQLGPLPVLVPAI-IWLY 270

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             G     T L +W  + +  +D  +RP L+     LP +    G++GG+   G++GLFI
Sbjct: 271 WSGETTWGTVLLVWSCV-VGTLDNVIRPVLIRMGADLPLILILSGVIGGLIAFGMIGLFI 329

Query: 331 GPVLMALIAVIWK 343
           GPVL+   AV W+
Sbjct: 330 GPVLL---AVTWR 339


>gi|2960002|emb|CAA76498.1| outer membrane protein [Campylobacter jejuni]
          Length = 364

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 88/181 (48%), Gaps = 18/181 (9%)

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEG 226
           ++I +F+F+ + +    +L    + + P   K++  +   V  V+      M I+AI +G
Sbjct: 170 VLICVFYFFANLYG--TELVIYLKSIIPIDKKELDDVLSEVGNVMAVVLYSMVIVAIFQG 227

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLW 284
            + G      G    + +GVI A+ ++IP  GGA I +  VS+Y     N+ +A  +F++
Sbjct: 228 ALFGLITIFYGYDG-ILMGVIFAVSSLIPAIGGALI-YMPVSLYEFASNNLNSALVIFIY 285

Query: 285 GAIEL-FIVDKTLRPF--------LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             I + FI D  ++P         LV  P K+  L  F  ++ G+ T G  G+ +GP ++
Sbjct: 286 SVIVISFIADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFGFWGIILGPAIL 345

Query: 336 A 336
            
Sbjct: 346 T 346


>gi|303238314|ref|ZP_07324849.1| protein of unknown function UPF0118 [Acetivibrio cellulolyticus
           CD2]
 gi|302594018|gb|EFL63731.1| protein of unknown function UPF0118 [Acetivibrio cellulolyticus
           CD2]
          Length = 355

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 157/358 (43%), Gaps = 44/358 (12%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  +  +R MI+ I+   LY ++      L   I+ +  + I  SFIS K   S F+ V 
Sbjct: 8   LKKKSTIRIMILAILFFLLYLMRDMMNLFLLTFIMAYLMYRI-QSFISSK--ISKFVKVG 64

Query: 66  ATVSVMCLFI--VPLLFLFYYGML-----EMKELVSKVV-LANQHGIPVPRWLSDIPGGM 117
             V  +CL++  V L  L  Y  L     E K+++ +V+    Q+   + ++L       
Sbjct: 65  NRVVTICLYMIFVFLAILGIYNFLPLVIQESKDVIDQVISYYTQNEAAIEKYL------- 117

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
             S L   ++ +    K + +      G+D + + AS  G +  D  ++I   I++LFF 
Sbjct: 118 -LSALKKFNIDNLDISKYVGK------GLDILAKSASSIGKLSFDMFIAI---ILSLFFL 167

Query: 178 YRDG----FSISQQLDSLG--EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
                   F++  +  S+    +    + KK      KVI + FL   I +I   +VL  
Sbjct: 168 LERTRIARFTLKFKTSSISVFYNEIEYFGKKFINSFGKVIEAQFLIALINSILSTIVLS- 226

Query: 232 AYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
              + G    + LG++  ++ +IP  G  IS   +S+     G +   T LF+WG I + 
Sbjct: 227 ---ILGFDKVIGLGIMIFVLGLIPVAGVIISLVPLSLIAFNTGGV--KTVLFVWGMIAVL 281

Query: 291 --IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKES 345
             +    L P L+    +LP   TF  L+ G     + GL IG PV M ++ ++  +S
Sbjct: 282 HALEAYVLNPKLMSSKTELPVFYTFIILLIGEHFFKVWGLIIGIPVFMFILDLVEVKS 339


>gi|295096092|emb|CBK85182.1| Predicted permease [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 371

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 4/132 (3%)

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R+  LG+ + A+ + ++ G    ++GVP      V+  +  +   G  +      I+L  
Sbjct: 212 RAVALGVVVTALVQAVLGGIGLAISGVPYATIFTVVMLMTCLAQLGPLLVLVPCIIWLYW 271

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
            G+    T L +W  + +  +D  +RP L+     LP +    G++GG+   G++GLFIG
Sbjct: 272 TGDTTWGTVLLVWSCV-VGTMDNVIRPLLIRMGADLPLILILSGVIGGLIAFGMIGLFIG 330

Query: 332 PVLMALIAVIWK 343
           PVL+   AV W+
Sbjct: 331 PVLL---AVTWR 339


>gi|313887473|ref|ZP_07821162.1| putative membrane protein [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923115|gb|EFR33935.1| putative membrane protein [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 401

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 122/293 (41%), Gaps = 29/293 (9%)

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLL--FLFYYGMLEMKELVSKVVLANQHGIPVPRW 109
           + +K     + A + TV  +  F++PLL   L    +    +  S  VL  Q    V + 
Sbjct: 64  VERKRWGRNWAASLLTVEAIFFFLIPLLGIVLMLIDLFSAFDPESLNVLTTQAQDVVKQV 123

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
                  +W++E   K  S   SL               +          FL+      F
Sbjct: 124 EERFGIEIWSNENIQKLTSFSTSL---------------VKGLLQGMSSFFLN-----AF 163

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFP---AYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
           +I+ L +F   G+    Q ++  E L P      K +S     +++S  +G+ ++AI +G
Sbjct: 164 IILFLLYFMLRGYD---QFEAAVEELLPFTECNKKTVSNETISIVKSNAIGIPLLAIVQG 220

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           +     Y + GV + +   V+T    +IP  G  + +  +++ + I G+  NA  L L+G
Sbjct: 221 VFAYIGYLIFGVDNALLFAVLTTFTTIIPVLGTMLVWIPIAVVMGINGDWLNAILLALYG 280

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
            I +  VD   R  L      +  L T FG+  G+   G  G+  GP++++LI
Sbjct: 281 FIVIGGVDNVARLLLQKQMANIHPLITIFGVFIGLSLFGFWGVIFGPLILSLI 333


>gi|183221243|ref|YP_001839239.1| putative signal peptide [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189911334|ref|YP_001962889.1| permease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167776010|gb|ABZ94311.1| Permease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779665|gb|ABZ97963.1| Conserved hypothetical protein; putative membrane protein; putative
           signal peptide [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 369

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 76/146 (52%), Gaps = 4/146 (2%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +++ R + + IR+  +G   I++ +G ++        V +   L  I  I ++IP  G  
Sbjct: 212 ERLGRRIEEAIRTVMMGNMFISLLQGALVYFLLLFTSVSNKFLLSSIATIFSLIPVVGTS 271

Query: 260 ISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL-PFLPTFFGLV 317
           + +  + +Y+ L++ N   +    + GA    I++  ++P ++   +K  PFL  F  L+
Sbjct: 272 VVWFPIGLYMGLVQENWTGSVLFMIAGAASYLILENFVKPKILDKKLKTHPFL-IFLSLI 330

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWK 343
           GG++  G+ G+ IGP+ + L+ ++W 
Sbjct: 331 GGLQEFGVAGIIIGPMALTLVIILWD 356


>gi|154491658|ref|ZP_02031284.1| hypothetical protein PARMER_01269 [Parabacteroides merdae ATCC
           43184]
 gi|154087899|gb|EDN86944.1| hypothetical protein PARMER_01269 [Parabacteroides merdae ATCC
           43184]
          Length = 341

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 70/138 (50%), Gaps = 1/138 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAP 259
           K +   +  ++ S  +G+ ++AI +GL+    YW+  VPS    G +T    +IP  G  
Sbjct: 187 KNVLNEINMIVTSNAIGIPLLAIIQGLIALLGYWIFDVPSPFLFGFLTCFATIIPVVGTA 246

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +  +++Y+ + G+  NA  L  +  I +  VD  +R  L         L T FG++ G
Sbjct: 247 LVWLPLALYMTLTGDWVNAAGLTAYALIIITNVDNLIRFILQKKMADTHPLITIFGVIIG 306

Query: 320 VRTMGLLGLFIGPVLMAL 337
           +   G +G+  GP+L+++
Sbjct: 307 LSLFGFMGIIFGPLLISI 324


>gi|269961961|ref|ZP_06176316.1| putative lipoprotein [Vibrio harveyi 1DA3]
 gi|269833284|gb|EEZ87388.1| putative lipoprotein [Vibrio harveyi 1DA3]
          Length = 409

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 152/337 (45%), Gaps = 46/337 (13%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +   ++ A II    +PI+  F SK       +++++ V +  + ++PLLF+F       
Sbjct: 80  YVNSIVMAFIISLLMFPIHEWFESKMPNHKNLVSLLSCVVLTFIIVIPLLFVF------- 132

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS--ETFLKTNGID 147
             +V +  + +Q+     +W+++  GG+           HP  +K L+    +L  + I+
Sbjct: 133 AAIVQQGSVFSQNTY---KWVTN--GGI------QDIFQHPWVVKGLALVNEYLPFDKIE 181

Query: 148 ------FIPRFASRFGMIFL-----------DYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                  I +FA+ FG   +           ++ +    M+  LFF  RD      ++ S
Sbjct: 182 PQAIAEKIGQFATSFGSNLVAISAKILGDATNFLMDFFLMLFVLFFLLRD----HDKIIS 237

Query: 191 LGEHLFP---AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              H+ P   +   KI   + +V +S  +G  + AI +G   G   WLAG P  +  G +
Sbjct: 238 AMRHILPLSRSQEDKILTEIEQVSKSAVMGSFLTAIAQGFAGGIGMWLAGFPG-LFWGTM 296

Query: 248 TAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
               + IP  G  + +   + YL + G+   A  L +W  + +  +D  LRP L+ G   
Sbjct: 297 MGFASFIPVVGTALIWIPAAAYLFLTGDTTWAIFLTVWSVVVVGSIDNLLRPLLMQGSAG 356

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +  L  FF L+GG+   GL+GL  GP++ A+  V++ 
Sbjct: 357 MNTLMIFFSLLGGLHLFGLIGLIYGPLIFAVTMVLFN 393


>gi|294809934|ref|ZP_06768608.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
 gi|294442780|gb|EFG11573.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 176

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 1/133 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +++   +  ++RS  +G+ ++AI +G V    Y L G P+ + LG +T    +IP  G  
Sbjct: 17  QEVIHEINMIVRSNAIGIPLLAIIQGGVATIGYLLFGAPNILLLGFLTCFATIIPMVGTA 76

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +  V+ YL I G+ FNA  +  +GAI +   D  +R  L         L T FG+V G
Sbjct: 77  LVWFPVAAYLAISGDWFNAIGIAAYGAIVVSQSDNLIRFILQKKMADTHPLITIFGVVIG 136

Query: 320 VRTMGLLGLFIGP 332
           +   G +G+  GP
Sbjct: 137 LPLFGFMGVIFGP 149


>gi|254230483|ref|ZP_04923858.1| putative permease [Vibrio sp. Ex25]
 gi|262393362|ref|YP_003285216.1| putative permease [Vibrio sp. Ex25]
 gi|151936989|gb|EDN55872.1| putative permease [Vibrio sp. Ex25]
 gi|262336956|gb|ACY50751.1| predicted permease [Vibrio sp. Ex25]
          Length = 361

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 155/338 (45%), Gaps = 48/338 (14%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +   ++ A II    +P++  F  K  +     A+++ V +  + ++PLLF+F       
Sbjct: 32  YINSIVMAFIISLLMFPVHEWFERKIPKHPNMAALLSCVVLTFIIVIPLLFVF------- 84

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP---QSLKILSETFLKTNGI 146
             +V +  + +Q+      W+++  GG+           HP   + L I++E +L  + I
Sbjct: 85  AAIVQQGSVFSQNTY---NWVTN--GGI------QDIFQHPFVIKGLAIVNE-YLPFDKI 132

Query: 147 D------FIPRFASRFGMIFL-----------DYCLSIIFMIIALFFFYRDGFSISQQLD 189
           +       I +FA+ FG   +           ++ ++   M+  LFF  RD      ++ 
Sbjct: 133 EPKAIAEKIGQFATSFGSNLVAISAKILGDATNFLMNFFLMLFVLFFLLRD----HDKII 188

Query: 190 SLGEHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           S   H+ P    +  RI   + +V +S  +G  + AI +GL  G   WLAG P  +  G 
Sbjct: 189 SAIRHILPLSRSQEDRILTEIEQVSKSAVMGSFLTAIAQGLAGGIGMWLAGFPG-LFWGT 247

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +    + IP  G  + +   + YL + G++  A  L +W  + +  +D  LRP L+ G  
Sbjct: 248 MMGFASFIPVVGTALIWIPAAAYLFLTGDMTWAIFLTVWSVVVVGSIDNLLRPLLMQGSA 307

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            +  L  FF L+GG+   GL+GL  GP++ A+  V++ 
Sbjct: 308 GMNTLMIFFSLLGGLHLFGLIGLIYGPLIFAVTMVLFN 345


>gi|305431582|ref|ZP_07400756.1| acid membrane antigen A [Campylobacter coli JV20]
 gi|304445389|gb|EFM38028.1| acid membrane antigen A [Campylobacter coli JV20]
          Length = 347

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 72/326 (22%), Positives = 139/326 (42%), Gaps = 39/326 (11%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           KGF   ++ A ++   +    + F+S         +++ T  ++ LF  P    F Y M+
Sbjct: 24  KGFLLVIIIASLMAVATSNANAKFLSLTNGRKFLASMLTTACMVLLFFAP----FVYAMI 79

Query: 88  EMKELVSK--VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           E+ + +    + L  Q    V  +   +P  +   E   K       L  +S+  L    
Sbjct: 80  ELAKALKNFDINLVTQTLNYVKNYQFTLPESLSFLEPKIKEFLASIDLNSISKQIL---- 135

Query: 146 IDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 +AS F   G  FL     I  ++I +F+F+ + +    +L    + + P   ++
Sbjct: 136 -----NYASSFTKSGAKFL-----IDMVLICIFYFFANLYG--TELVIYIKSVIPIDKQE 183

Query: 203 ISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GA 258
           +  I   V  V+      M IIAI +G +        G  + + +GVI A+ ++IP  G 
Sbjct: 184 LDDILSEVGNVMAVVLYSMIIIAILQGALFSIIAMFYGYDA-ILMGVIFAVSSLIPALGG 242

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPF--------LVGGPIKLPF 309
            + +  +S+Y     ++ +A  +F++  + + FI D  ++P         LV  P K+  
Sbjct: 243 ALVYIPISLYEFASSSLGSALVIFIYSVVVISFIADTLVKPLIIKWINEKLVKTPAKINE 302

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLM 335
           L  F  ++ G+ T G  G+ +GP ++
Sbjct: 303 LLIFLAMIAGISTFGFWGIILGPAIL 328


>gi|113868389|ref|YP_726878.1| permease [Ralstonia eutropha H16]
 gi|113527165|emb|CAJ93510.1| predicted permease [Ralstonia eutropha H16]
          Length = 367

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 77/142 (54%), Gaps = 10/142 (7%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH--VALGVITAIMAMIPGGA 258
           ++I+ +    IR+   G+  IA  + L++G  + + GVP+   +A+ V+   +A +P  A
Sbjct: 207 QRIATLCTATIRAVAQGVVGIAFIQMLLIGIGFVIKGVPAAGVLAMAVLLLGIAQLP--A 264

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV---DKTLRPFLVGGPIKLPFLPTFFG 315
            +    V IY+        AT +F   AI +F+    D  L+P L+G  + +P      G
Sbjct: 265 TLITVPVIIYVFATEGASVATIVF---AIYVFVAGLADNVLKPLLLGRGVDVPMPVVLIG 321

Query: 316 LVGGVRTMGLLGLFIGPVLMAL 337
            +GG+ T G++GLFIGPV++A+
Sbjct: 322 ALGGMVTGGVIGLFIGPVVLAV 343


>gi|330946225|gb|EGH47411.1| hypothetical protein PSYPI_36155 [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 226

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 95/202 (47%), Gaps = 7/202 (3%)

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVP-RWLSDIP-GGMWASELWTKHLSHPQSL 133
            PL++L +     +++    +      G+P P +WL+ IP  G     LWT       + 
Sbjct: 5   APLVWLGFNLADHVRDATGLIKDIQVDGLPDPPQWLAGIPLVGERLVALWTTIDQQGAAF 64

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
               +  L   G ++I   +++ G   L+  LSI+F     FFFYRDG  ++  + SL E
Sbjct: 65  MATLKPHLGQVG-NWILARSAQIGSGILELTLSIVFA----FFFYRDGPRLAAFVLSLLE 119

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            L     +    +V   ++    G+   A  + ++    + +AG+P  + LG++T + ++
Sbjct: 120 RLIGERAQYYLDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALVLGILTFLFSL 179

Query: 254 IPGGAPISFTAVSIYLLIKGNI 275
           IP G P+ +   + +L+ +G +
Sbjct: 180 IPMGPPLVWLPATAWLVWQGGV 201


>gi|94969196|ref|YP_591244.1| hypothetical protein Acid345_2169 [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551246|gb|ABF41170.1| protein of unknown function UPF0118 [Candidatus Koribacter
           versatilis Ellin345]
          Length = 354

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/344 (21%), Positives = 140/344 (40%), Gaps = 27/344 (7%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  + L     LK F   +   +II    +P Y    +         AV+ T+ ++ L 
Sbjct: 26  LIALLALTCFVILKAFIPLLAWGVIIATAGYPGYRKLAAALGGREKLAAVLCTLILLSLI 85

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHP-QS 132
           ++P + L        + + S+V   N    P P  +   P  G   +++WT   +   Q+
Sbjct: 86  VIPAVLLAGTLTDGARSIASQVQSGNFRIPPPPAKVQGWPLIGKPLNKVWTTASTDATQA 145

Query: 133 LKILSETFLKTNGIDFIPRFAS---RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
           L  +S    K     + P   S   + G   L + LSI+     L    R     SQ++ 
Sbjct: 146 LNKVSPVIQK-----YAPTLLSAGAKLGGTLLQFILSIVLAGF-LLASSRGNAEFSQKIF 199

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI-- 247
                +F     +   +    +RS   G+  +A+ + ++    + + G+P      ++  
Sbjct: 200 ---RRIFREKGDEFETLTANTVRSVTNGIVGVALIQTILASLGFLVVGLPGAGMWSLLFF 256

Query: 248 --TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
               +   +    P    A +I       IF   C+F+       ++D  L+P L+G   
Sbjct: 257 VAAVLQVGVVVLLPAVAFAFTITSTTPAVIFLVWCMFVG------VIDNVLKPMLLGRGN 310

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL---IAVIWKESI 346
           ++P L  F G++GG   MG +GLFIG +++++   + +IW E +
Sbjct: 311 QVPTLVVFLGVIGGFIAMGTIGLFIGAIILSVGYKLFLIWLEDV 354


>gi|261339537|ref|ZP_05967395.1| putative membrane protein [Enterobacter cancerogenus ATCC 35316]
 gi|288318351|gb|EFC57289.1| putative membrane protein [Enterobacter cancerogenus ATCC 35316]
          Length = 371

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 4/132 (3%)

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R+  LG+ + A+ + ++ G    ++GVP      V+  +  +   G  +      I+L  
Sbjct: 212 RAVALGVVVTALVQAILGGIGLAVSGVPYATVFTVVMLMTCLAQLGPLLVLVPSIIWLYW 271

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
            G+    T L +W  + +  +D  +RP L+     LP +    G++GG+   G++GLFIG
Sbjct: 272 TGDTTWGTVLLVWSCV-VGTMDNVIRPILIRMGADLPLILILSGVIGGLIAFGMIGLFIG 330

Query: 332 PVLMALIAVIWK 343
           PVL+   AV W+
Sbjct: 331 PVLL---AVTWR 339


>gi|21228773|ref|NP_634695.1| hypothetical protein MM_2671 [Methanosarcina mazei Go1]
 gi|20907289|gb|AAM32367.1| hypothetical protein MM_2671 [Methanosarcina mazei Go1]
          Length = 401

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 113/240 (47%), Gaps = 16/240 (6%)

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL---FFFYRDGFSI 184
           +HP  L      +L T  +D++P+  +    I  D  + II +I+ +   ++   +  +I
Sbjct: 118 THPGKLTESIGGYLNTLVMDYVPQIQNNIVQISTDLSILIIELIVIVVLTYYLLVESETI 177

Query: 185 SQQLDSLGEHLFPAYWKKIS----RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           + +L  L    FP   +K+     R +  + ++ F+   +  +  G++ G  YW+ GVP 
Sbjct: 178 AAELPGL----FPD--RKVGVVFLRELNHIYQNLFVVYFLTCLATGVIGGILYWVLGVPY 231

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRP 298
            +  G++T IMA++P  GA   +  +++Y ++  N F A  L   G + L I+ D  +RP
Sbjct: 232 PLIWGIVTFIMALLPVVGAGTVYGLLALYYVLIQNYFTAGALVFLGIVFLNIIPDFVIRP 291

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA-LIAVIWKESIMAIKENKEKIS 357
            L      +    T       V  +G +G+ IGP+    L+AV   + I+     +E+ S
Sbjct: 292 KLARSRAAIHPAITLLAFAAPVFVLGPVGIIIGPLTYGFLLAVFRTKKIIGASPVREESS 351


>gi|300775462|ref|ZP_07085324.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
 gi|300506202|gb|EFK37338.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
          Length = 359

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 1/125 (0%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
           K+I +  +G+ ++A+G+G+V    Y + G P  V L  +TA  ++IP  G  I +  V I
Sbjct: 196 KLIMANAIGIPVVAVGQGIVSLIGYIIFGAPGPVLLFALTAASSVIPVVGTAIVYVPVCI 255

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +++ +GN      L  +  + + + D  LR  L+     +  L T FG++ G+   G +G
Sbjct: 256 FMIAEGNTGPGLGLAAYCVVVVGLTDNLLRFTLLKKLENIHPLNTVFGIIMGMNLFGFMG 315

Query: 328 LFIGP 332
           L  GP
Sbjct: 316 LIFGP 320


>gi|253997450|ref|YP_003049514.1| hypothetical protein Mmol_2085 [Methylotenera mobilis JLW8]
 gi|253984129|gb|ACT48987.1| protein of unknown function UPF0118 [Methylotenera mobilis JLW8]
          Length = 351

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 161/337 (47%), Gaps = 10/337 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYF-LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           M+N   I R   + +++V   F L  F A +L A II   +WP+Y        +     A
Sbjct: 1   MINTNQIARIASISLLIVGCVFVLYPFMAAMLFAAIICVFTWPLYQRVWLLFGKRDMLAA 60

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV-PRWLSDIPG-GMWASE 121
            + T+ ++   I+P+ +L          ++ +     Q   PV P WL ++P  G   +E
Sbjct: 61  AMMTLLLLFAMIMPMAYLAANLADSATLMLDEAQAVLQSMQPVAPTWLKNLPIIGESLAE 120

Query: 122 LWTKHL-SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            W + + SH + + +L++        + I  F  +   + +   + ++ ++   FFFYRD
Sbjct: 121 SWQRVMASHEELMHLLNQY------AEPIRVFLLKVVQMVMGGFVQLVLVVFVAFFFYRD 174

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +   + S+   L     +++  +    ++   LG+   A+ +  V    +WLAG P+
Sbjct: 175 GTKLVAAVTSMVRRLGGELGQEMLVLSCNTVKGVMLGVFGTALAQASVGLFGFWLAGAPA 234

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + L + T  +++IP G P+ +   S++L   G+   A  L ++G + + +VD  ++P L
Sbjct: 235 PLLLALATFFLSVIPVGPPLVWGGASLWLFNHGDQGWAIFLLVYGLLVISMVDNIVKPIL 294

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           +     LP L    G++GG+   G +G+F+GP L+A+
Sbjct: 295 ISHSSHLPLLLVVLGVLGGILAFGFIGIFLGPTLLAV 331


>gi|222824271|ref|YP_002575845.1| acid membrane antigen A [Campylobacter lari RM2100]
 gi|222539492|gb|ACM64593.1| acid membrane antigen A [Campylobacter lari RM2100]
          Length = 347

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/340 (21%), Positives = 147/340 (43%), Gaps = 41/340 (12%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I+FI+   L+  K F   +  A ++  ++  +   F+S  +      A   T  ++ LF 
Sbjct: 12  ILFILFWVLFLFKPFLMNIAIASLMAVSTSNVNVKFLSIFKGKKVIAAAATTTFMLALFF 71

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGI--PVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           +P    F Y ++E+ +  S   ++  H        +   +P  +   E   K       L
Sbjct: 72  IP----FVYAIIELAKAASGFNISYIHNTIEYFKNYSLHLPESLSFIEPKIKEALASIDL 127

Query: 134 KILSE---TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
             +S+   T+L +         A++FG  FL   +     +I +F+F+ + +    QL  
Sbjct: 128 NSISKDVLTYLSS---------ATKFGTKFLTDMV-----LICVFYFFANLYG--AQLIG 171

Query: 191 LGEHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
             + + P   ++   I   V  V+   F  M + AI +G++        G  + + +G++
Sbjct: 172 YIKTIVPMKKEETQGILSEVSNVMSVVFYSMVLNAILQGVLFAIITKFYGYDA-ILMGIL 230

Query: 248 TAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPF----- 299
               ++IP  GGA I +  VS+Y     N+  A  +F++  + + FI D  ++P+     
Sbjct: 231 FCFSSLIPVVGGALI-YVPVSLYEFANNNLSGALVIFIYSVVMISFIADTLVKPYIIKWI 289

Query: 300 ---LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
              LV  P ++  L  FF ++ G+ + G  G+ +GP ++ 
Sbjct: 290 NEKLVQIPTQINELLIFFAMIAGISSFGFWGIILGPAILT 329


>gi|227327021|ref|ZP_03831045.1| putative inner membrane protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 369

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 151/358 (42%), Gaps = 32/358 (8%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I  +I+   + ++ F      A ++   +WP+   F +      +   ++ T+ ++ LFI
Sbjct: 22  ITIMIIACFWVVQPFILGFAWACMVVIATWPMLIKFQALLWGRRSLAVLVMTLLLILLFI 81

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           VP+  L    +     L+S          P   WL+ IP       +  K  +  Q+L  
Sbjct: 82  VPIAVLVSSVVDNSSALMSWGARQENFSPPTLEWLTSIP------LVGEKLFNSWQAL-- 133

Query: 136 LSETFLKTNGIDFIPRFASRFGMI-------------FLDYCLSIIFMIIALFFFYRDGF 182
                L++ G     +    FG               FL +C S++ +  AL ++   G 
Sbjct: 134 -----LQSGGSGLFAKVQPYFGKTATWLVAQAAHVGRFLMHC-SLMLIFSALLYY--KGE 185

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           ++++ +      L          +  + IR+  LG+ + AI + ++ G    L+G+P   
Sbjct: 186 AVAKAVRHFAIRLGQERGDAAVILAAQSIRAVALGVVVTAIVQSVLGGIGLGLSGIPYTT 245

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  +  +   G  P+   A+ I+L   G+    T L +W    +  +D  +RP L+
Sbjct: 246 LLTVLMFLCCLAQLGPLPVLIPAI-IWLYWTGDTTWGTILLVWSCF-VGTIDNIIRPVLI 303

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                LP L    G++GG+   G++G+FIGPV++A+   +    +  I E +  +S N
Sbjct: 304 RMGADLPMLLILSGVIGGLLAFGMIGIFIGPVVLAVSYRLLFAWMREIPEPQNILSVN 361


>gi|57168276|ref|ZP_00367415.1| acid membrane antigen A Cj1363 [Campylobacter coli RM2228]
 gi|57020650|gb|EAL57319.1| acid membrane antigen A Cj1363 [Campylobacter coli RM2228]
          Length = 347

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 72/326 (22%), Positives = 138/326 (42%), Gaps = 39/326 (11%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           KGF   ++ A ++   +    + F+S         +++ T  ++ LF  P    F Y M+
Sbjct: 24  KGFLLVIIIASLMAVATSNANAKFLSLTNGRKFLASMLTTACMVLLFFAP----FVYAMI 79

Query: 88  EMKELVSK--VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           E+ + +    + L  Q    V  +   +P  +   E   K       L  +S+  L    
Sbjct: 80  ELAKALKNFDINLVTQTLNYVKNYQFTLPESLSFLEPKIKEFLASIDLNSISKQIL---- 135

Query: 146 IDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 +AS F   G  FL     I  ++I +F+F+ + +    +L    + + P   ++
Sbjct: 136 -----NYASSFTKSGAKFL-----IDMVLICIFYFFANLYG--TELVIYIKSVIPIDKQE 183

Query: 203 ISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GA 258
           +  I   V  V+      M IIAI +G +        G  + + +GVI A+ ++IP  G 
Sbjct: 184 LDDILSEVGNVMAVVLYSMIIIAILQGALFSIIAMFYGYDA-ILMGVIFAVSSLIPALGG 242

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPF--------LVGGPIKLPF 309
            + +  +S+Y      + +A  +F++  + + FI D  ++P         LV  P K+  
Sbjct: 243 ALVYIPISLYEFASSGLGSALVIFIYSVVVISFIADTLVKPLIIKWINEKLVKTPAKINE 302

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLM 335
           L  F  ++ G+ T G  G+ +GP ++
Sbjct: 303 LLIFLAMIAGISTFGFWGIILGPAIL 328


>gi|296102735|ref|YP_003612881.1| putative inner membrane protein [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295057194|gb|ADF61932.1| putative inner membrane protein [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 371

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 4/132 (3%)

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R+  LG+ + A+ + ++ G    ++GVP      V+  +  +   G  +      I+L  
Sbjct: 212 RAVALGVVVTALVQAVLGGIGLAISGVPYATVFTVVMLMTCLAQLGPLLVLVPSIIWLYW 271

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
            G+    T L +W  + +  +D  +RP L+     LP +    G++GG+   G++GLFIG
Sbjct: 272 TGDTTWGTVLLVWSCV-VGTMDNVIRPILIRMGADLPLILILSGVIGGLIAFGMIGLFIG 330

Query: 332 PVLMALIAVIWK 343
           PVL+   AV W+
Sbjct: 331 PVLL---AVTWR 339


>gi|91215955|ref|ZP_01252924.1| putative transmembrane protein [Psychroflexus torquis ATCC 700755]
 gi|91185932|gb|EAS72306.1| putative transmembrane protein [Psychroflexus torquis ATCC 700755]
          Length = 354

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 69/133 (51%), Gaps = 1/133 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAP 259
           K I++   K +++  +G+ ++A+ +G++    YW+ GVP  +   VIT I +MIP  G  
Sbjct: 183 KLIAKESAKKVKANAIGIPLVALFQGIISLIGYWIFGVPEAMFWFVITTIGSMIPFVGTA 242

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           I F  V++ L  +G   +A  + L+G + +   D  +R  ++        L T  G++ G
Sbjct: 243 IGFIPVTLLLYYQGETASAIGVLLYGFVIVGSSDNIVRLLVLKKMANEHPLITLIGVIIG 302

Query: 320 VRTMGLLGLFIGP 332
           V   G +GL  GP
Sbjct: 303 VPLFGFIGLIFGP 315


>gi|317485026|ref|ZP_07943908.1| permease [Bilophila wadsworthia 3_1_6]
 gi|316923561|gb|EFV44765.1| permease [Bilophila wadsworthia 3_1_6]
          Length = 353

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 1/128 (0%)

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFL 283
           +G + G  + +A VP     G+I A +A IP  G  + +  V I+L + G+      L +
Sbjct: 226 QGFLCGVGFAIAEVPQPAFWGLIAAFVAPIPFVGTALVWLPVCIWLWLTGSTVACIGLAI 285

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           W A+ +  VD  LRPF +   I    +     ++ G+   G +G+F GPVL+A+      
Sbjct: 286 WCALVVAGVDNLLRPFFLKTGIDASVVTLILSILCGLAAFGPVGVFAGPVLVAVAIQAGN 345

Query: 344 ESIMAIKE 351
           ES +  K 
Sbjct: 346 ESTLCRKH 353


>gi|170690238|ref|ZP_02881405.1| protein of unknown function UPF0118 [Burkholderia graminis C4D1M]
 gi|170144673|gb|EDT12834.1| protein of unknown function UPF0118 [Burkholderia graminis C4D1M]
          Length = 381

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 137/328 (41%), Gaps = 14/328 (4%)

Query: 37  ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV 96
            LI+  T +P++             +A +  +    + +VP  +L    + +  E V  V
Sbjct: 46  GLILAITLYPLHIRLRRSLRNRDGLVATLIVLVAFGVILVPS-YLLGVAVADSIEHVMAV 104

Query: 97  VLANQHGIPVPRWLSDIPG----GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
           V +    IP P     + G    G    + W +  +    L       LK  G   +   
Sbjct: 105 VKSGSFRIPPPA--ESVAGWPLVGQHVHDFWQQASTDLTGLAQRFAPQLKEAGRALLGTV 162

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
               G   L + +++I   I + +  R G   +QQ+ S      P    +I+ +    IR
Sbjct: 163 TG-LGAGLLIFFIALIVAGILMAYGER-GHRSAQQIAS--RISGPERGAQITDLCTATIR 218

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
           +   G+  IA  + L++G  + + G+P+   L +   ++ ++   A +    V  ++++ 
Sbjct: 219 AVAQGVVGIAFIQMLLIGGGFVVMGIPAAGLLALGVLLIGIMQLPATLITLPVIAFVMLT 278

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
             +  AT  F        + D  L+P L+G  + +P      G +GG+ T G++GLFIGP
Sbjct: 279 EGVSTATIAFSAYVFVAGLADNVLKPLLLGRGVAVPMPVVLIGALGGMVTGGVIGLFIGP 338

Query: 333 VLMAL-IAVIWKESIMAIKENKEKISSN 359
           V++A+   + W+   +  +   E+I  N
Sbjct: 339 VMLAVGYELFWRW--VKDQPQAERIDEN 364


>gi|28899250|ref|NP_798855.1| putative permease [Vibrio parahaemolyticus RIMD 2210633]
 gi|153838395|ref|ZP_01991062.1| putative permease [Vibrio parahaemolyticus AQ3810]
 gi|260362174|ref|ZP_05775164.1| putative permease [Vibrio parahaemolyticus K5030]
 gi|260879054|ref|ZP_05891409.1| putative permease [Vibrio parahaemolyticus AN-5034]
 gi|260895929|ref|ZP_05904425.1| putative permease [Vibrio parahaemolyticus Peru-466]
 gi|260903440|ref|ZP_05911835.1| putative permease [Vibrio parahaemolyticus AQ4037]
 gi|28807474|dbj|BAC60739.1| putative permease [Vibrio parahaemolyticus RIMD 2210633]
 gi|149748202|gb|EDM59061.1| putative permease [Vibrio parahaemolyticus AQ3810]
 gi|308085368|gb|EFO35063.1| putative permease [Vibrio parahaemolyticus Peru-466]
 gi|308089577|gb|EFO39272.1| putative permease [Vibrio parahaemolyticus AN-5034]
 gi|308106571|gb|EFO44111.1| putative permease [Vibrio parahaemolyticus AQ4037]
 gi|308111062|gb|EFO48602.1| putative permease [Vibrio parahaemolyticus K5030]
          Length = 361

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 151/337 (44%), Gaps = 46/337 (13%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +   ++ A II    +P++  F  K  +     +++  V +  + ++PLLF+F       
Sbjct: 32  YINSIVMAFIISLLMFPVHEWFERKMPKHKNSASLLTCVVLTFIIVIPLLFVF------- 84

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS--ETFLKTNGID 147
             +V +  + +Q+     +W+++  GG+           HP  +K LS    +L  + I+
Sbjct: 85  AAIVQQGSVFSQNTY---KWVTN--GGI------QDIFQHPWVIKGLSIVNEYLPFDKIE 133

Query: 148 ------FIPRFASRFGMIFL-----------DYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                  I +FA+ FG   +           ++ +    M+  LFF  RD      ++ S
Sbjct: 134 PKAIAEKIGQFATTFGSNLVAISAKILGDATNFLMDFFLMLFVLFFLLRD----HDKIIS 189

Query: 191 LGEHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              H+ P    +  RI   + +V +S  +G  + AI +GL  G   WLAG P  +  G +
Sbjct: 190 AIRHILPLSRSQEDRILTEIEQVSKSAVMGSFLTAIAQGLAGGIGMWLAGFPG-LFWGTM 248

Query: 248 TAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
               + IP  G  + +   + YL + G++  A  L  W  + +  +D  LRP L+ G   
Sbjct: 249 MGFASFIPVVGTALIWIPAAAYLFLTGDMTWAIFLTAWSVVIVGSIDNLLRPLLMQGSAG 308

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +  L  FF L+GG+   GL+GL  GP++ A+  V++ 
Sbjct: 309 MNTLMIFFSLLGGLHLFGLIGLIYGPLIFAVTMVLFN 345


>gi|153835384|ref|ZP_01988051.1| putative permease [Vibrio harveyi HY01]
 gi|156975685|ref|YP_001446592.1| hypothetical protein VIBHAR_03420 [Vibrio harveyi ATCC BAA-1116]
 gi|148868086|gb|EDL67255.1| putative permease [Vibrio harveyi HY01]
 gi|156527279|gb|ABU72365.1| hypothetical protein VIBHAR_03420 [Vibrio harveyi ATCC BAA-1116]
          Length = 361

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 151/337 (44%), Gaps = 46/337 (13%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +   ++ A II    +PI+  F  K       +++++ V +  + ++PLLF+F       
Sbjct: 32  YINSIVMAFIISLLMFPIHEWFERKLPNHKNLVSLLSCVVLTFIIVIPLLFVF------- 84

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS--ETFLKTNGID 147
             +V +  + +Q+     +W+S+  GG+           HP  +K L+    +L  + I+
Sbjct: 85  AAIVQQGSVFSQNTY---KWVSN--GGI------QDIFQHPWVVKGLALVNEYLPFDKIE 133

Query: 148 ------FIPRFASRFGMIFL-----------DYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                  I +FA+ FG   +           ++ +    M+  LFF  RD      ++ S
Sbjct: 134 PQAIAEKIGQFATSFGSNLVAISAKILGDATNFLMDFFLMLFVLFFLLRD----HDKIIS 189

Query: 191 LGEHLFP---AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              H+ P   +   KI   + +V +S  +G  + AI +G   G   WLAG P  +  G +
Sbjct: 190 AMRHILPLSRSQEDKILTEIEQVSKSAVMGSFLTAIAQGFAGGIGMWLAGFPG-LFWGTM 248

Query: 248 TAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
               + IP  G  + +   + YL + G+   A  L +W  + +  +D  LRP L+ G   
Sbjct: 249 MGFASFIPVVGTALIWIPAAAYLFLTGDTTWAIFLTVWSVLVVGSIDNLLRPLLMQGSAG 308

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +  L  FF L+GG+   GL+GL  GP++ A+  V++ 
Sbjct: 309 MNTLMIFFSLLGGLHLFGLIGLIYGPLIFAVTMVLFN 345


>gi|163803357|ref|ZP_02197234.1| hypothetical protein 1103602000583_AND4_14346 [Vibrio sp. AND4]
 gi|159172870|gb|EDP57710.1| hypothetical protein AND4_14346 [Vibrio sp. AND4]
          Length = 361

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 151/337 (44%), Gaps = 46/337 (13%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +   ++ A II    +PI+  F  K       +++++ V +  + ++PLLF+F   +++ 
Sbjct: 32  YINSIVMAFIISLLMFPIHEWFERKMPSHKNLVSLLSCVVLTFIIVIPLLFVFA-AIVQQ 90

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS--ETFLKTNGID 147
             + S+   A         W+++  GG+           HP  +K L+    +L  + I+
Sbjct: 91  GSVFSQNTYA---------WVTN--GGI------QDIFQHPFVVKALALVNEYLPFDKIE 133

Query: 148 ------FIPRFASRFGMIFL-----------DYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                  I +FA+ FG   +           ++ +    M+  LFF  RD      ++ S
Sbjct: 134 PQAIAEKIGQFATSFGSNLVAISAKILGDATNFLMDFFLMLFVLFFLLRD----HDKIIS 189

Query: 191 LGEHLFP---AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              H+ P   +   KI   + +V +S  +G  + AI +GL  G   WLAG P  +  G +
Sbjct: 190 AMRHILPLSRSQEDKILTEIEQVSKSAVMGSFLTAIAQGLAGGIGMWLAGFPG-LFWGTM 248

Query: 248 TAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
               + IP  G  + +   + YL + G+   A  L +W  + +  +D  LRP L+ G   
Sbjct: 249 MGFASFIPVVGTALIWIPAAAYLFLTGDTTWAIFLAVWSIVVVGSIDNLLRPLLMQGSSG 308

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +  L  FF L+GG+   GL+GL  GP++ A+  V++ 
Sbjct: 309 MNTLMIFFSLLGGLHLFGLIGLIYGPLVFAVTMVLFN 345


>gi|328474213|gb|EGF45018.1| putative permease [Vibrio parahaemolyticus 10329]
          Length = 361

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 151/337 (44%), Gaps = 46/337 (13%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +   ++ A II    +P++  F  K  +     +++  V +  + ++PLLF+F       
Sbjct: 32  YINSIVMAFIISLLMFPVHEWFERKMPKHKNSASLLTCVVLTFIIVIPLLFVF------- 84

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS--ETFLKTNGID 147
             +V +  + +Q+     +W+++  GG+           HP  +K LS    +L  + I+
Sbjct: 85  AAIVQQGSVFSQNTY---KWVTN--GGI------QDIFQHPWVIKGLSIVNEYLPFDKIE 133

Query: 148 ------FIPRFASRFGMIFL-----------DYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                  I +FA+ FG   +           ++ +    M+  LFF  RD      ++ S
Sbjct: 134 PKAIAEKIGQFATTFGSNLVAISAKILGDATNFLMDFFLMLFVLFFLLRD----HDKIIS 189

Query: 191 LGEHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              H+ P    +  RI   + +V +S  +G  + AI +GL  G   WLAG P  +  G +
Sbjct: 190 AIRHIMPLSRSQEDRILTEIEQVSKSAVMGSFLTAIAQGLAGGIGMWLAGFPG-LFWGTM 248

Query: 248 TAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
               + IP  G  + +   + YL + G++  A  L  W  + +  +D  LRP L+ G   
Sbjct: 249 MGFASFIPVVGTALIWIPAAAYLFLTGDMTWAIFLTAWSVVIVGSIDNLLRPLLMQGSAG 308

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +  L  FF L+GG+   GL+GL  GP++ A+  V++ 
Sbjct: 309 MNTLMIFFSLLGGLHLFGLIGLIYGPLIFAVTMVLFN 345


>gi|160891098|ref|ZP_02072101.1| hypothetical protein BACUNI_03545 [Bacteroides uniformis ATCC 8492]
 gi|270294399|ref|ZP_06200601.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317481005|ref|ZP_07940085.1| hypothetical protein HMPREF1007_03204 [Bacteroides sp. 4_1_36]
 gi|156859319|gb|EDO52750.1| hypothetical protein BACUNI_03545 [Bacteroides uniformis ATCC 8492]
 gi|270275866|gb|EFA21726.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316902898|gb|EFV24772.1| hypothetical protein HMPREF1007_03204 [Bacteroides sp. 4_1_36]
          Length = 340

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 88/191 (46%), Gaps = 8/191 (4%)

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           I  +PR           + ++I  ++  L+F    G  + Q ++ L     P        
Sbjct: 128 ISILPRIGQAIMGGISSFAVNIFVLVFVLYFMLIGGKKMEQYVNDL----LPFNDDNTQN 183

Query: 206 IVPKV---IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPIS 261
           ++ ++   +RS  +G+ ++A+ +G V    YW+ G P+ +  G +T   ++IP  G  + 
Sbjct: 184 VIHEINMIVRSNAIGIPLLAVIQGGVAMIGYWIFGAPNILFAGFLTCFASIIPMVGTALV 243

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +  +++Y+ + GN   A  L ++G   +  +D  +R  +      +  L T FG+V G+ 
Sbjct: 244 WFPIAVYMALIGNWVQAIGLAIYGGAVISQLDNLIRFIIQKKMADIHPLITVFGVVIGLS 303

Query: 322 TMGLLGLFIGP 332
             G +G+  GP
Sbjct: 304 LFGFMGVIFGP 314


>gi|186471214|ref|YP_001862532.1| hypothetical protein Bphy_6456 [Burkholderia phymatum STM815]
 gi|184197523|gb|ACC75486.1| protein of unknown function UPF0118 [Burkholderia phymatum STM815]
          Length = 367

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 78/160 (48%), Gaps = 6/160 (3%)

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
           YR    I+ ++        P    +I+ +    IR+   G+  IA  + L++G  + + G
Sbjct: 190 YRSAVQIASRISG------PDNGAQIADLCTATIRAVAQGVVGIAFIQMLLIGIGFVVMG 243

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           +P    L +   ++ ++   A +    V +++++   +  AT +F        + D  L+
Sbjct: 244 IPGAGLLALAVLLIGIMQLPATLITVPVIVFVIVTEGVSTATIIFSVYVFVAGLADNVLK 303

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           P L+G  + +P      G +GG+ T G++GLFIGPV++A+
Sbjct: 304 PLLLGRGVAVPMPVVLIGALGGMVTGGVIGLFIGPVMLAV 343


>gi|313156951|gb|EFR56384.1| putative membrane protein [Alistipes sp. HGB5]
          Length = 382

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 92/196 (46%), Gaps = 8/196 (4%)

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP---AYWKK 202
           I  IP+          D+ ++I+ ++  L+F    G    ++++     + P   +    
Sbjct: 147 IGMIPKLGQWVVSSIFDFGVNIVVLLFVLYFMLIGG----RRMEEYCREILPFDSSVSGS 202

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
           + R V  ++RS  +G+ ++A+ +G+V    Y + G PS +  GV+T    +IP  G  + 
Sbjct: 203 VMREVHMIVRSNAIGIPLLAVVQGIVAYIGYLIFGAPSPLFWGVLTCFATIIPIFGTALV 262

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +  ++ Y+ + G    A  L L+G + +  VD  +R  +         L T FG+  G+ 
Sbjct: 263 WLPLAGYMALAGEWGPAVGLTLYGGLVVTHVDNVVRFVMQKKLADTHPLVTIFGVFIGLS 322

Query: 322 TMGLLGLFIGPVLMAL 337
             G +G+  GP+L+ +
Sbjct: 323 LFGFMGVIFGPLLLEM 338


>gi|170723630|ref|YP_001751318.1| hypothetical protein PputW619_4469 [Pseudomonas putida W619]
 gi|169761633|gb|ACA74949.1| protein of unknown function UPF0118 [Pseudomonas putida W619]
          Length = 365

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 75/153 (49%), Gaps = 1/153 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           K ++ +    IR+   G+  IA  + L++G  + + GVP    L ++  ++ +    A +
Sbjct: 207 KPLATLCTATIRAVAQGVIGIAFIQMLLIGVGFVIKGVPGAGMLAILILMLGIAQAPATL 266

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
               V IY+L       AT +F        + D  L+P L+G  + +P      G +GG+
Sbjct: 267 ITLPVIIYVLNVEGFTVATIVFAVYTFVAGLADNVLKPLLLGRGVDVPMPVVLIGALGGM 326

Query: 321 RTMGLLGLFIGPVLMALIAVI-WKESIMAIKEN 352
              G++GLF+GPV++A+  V+ W+   + + E 
Sbjct: 327 VVKGIIGLFLGPVILAVTYVLFWQWVALQVPEQ 359


>gi|149196508|ref|ZP_01873562.1| hypothetical protein LNTAR_08459 [Lentisphaera araneosa HTCC2155]
 gi|149140188|gb|EDM28587.1| hypothetical protein LNTAR_08459 [Lentisphaera araneosa HTCC2155]
          Length = 363

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 161/368 (43%), Gaps = 26/368 (7%)

Query: 6   LNPQGIMRWMI-MFIILVSLYFLKGFFAP----VLSALIIGFTSWPIYSSFISKKEESST 60
           LN + +M  +I M +IL   Y     FAP    +L ALII    +P++   ++KK     
Sbjct: 8   LNKKTMMDLLIRMTLILYLSYLCLKVFAPFALLMLWALIIAIVLFPLHQK-LAKKFNGKQ 66

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW-LSDIPG-GMW 118
             A    V + CL I   + +  + M++  + + +   +    I  P+  + + P  G  
Sbjct: 67  GRAATVIVLLGCLIIGTPVVVLGFSMVDHVQDLYRAYESGNVQIKEPKESVKEWPIIGRK 126

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF- 177
           A +LWT   +   +  +  +  + +    F  +     G       + +  ++I+ F   
Sbjct: 127 AHQLWTDASADFSAFLVDYKEPITS----FFKKMLGAAGGAMGSVAMFMGALVISGFMMA 182

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
           + D  S++  L        P   +K++++    +RS   G+  +A  + L++G    LA 
Sbjct: 183 FGDRGSVAM-LKIANRITGPERGEKLTKLSVMTVRSVTTGVIGVAFIQALIIGVGLILAD 241

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYL------LIKGNIFNATCLFLWGAIELFI 291
           +P+   L ++   + ++   A I    V IY+       +  NIF  T  F+ G++    
Sbjct: 242 IPAAAILSLVVMFLGILQLPAVIILLPVIIYMWSSTGSSLAANIF-FTIYFIVGSLS--- 297

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            D  L+P L+G  +  P      G +GG+   GL+GLF+G  L+A+   I+ + +    E
Sbjct: 298 -DNILKPMLLGRGVDAPMPVVLIGALGGMMASGLIGLFLGATLLAVAYRIFMDWV-DDPE 355

Query: 352 NKEKISSN 359
             +KI++ 
Sbjct: 356 GNQKINAE 363


>gi|325105490|ref|YP_004275144.1| protein of unknown function UPF0118 [Pedobacter saltans DSM 12145]
 gi|324974338|gb|ADY53322.1| protein of unknown function UPF0118 [Pedobacter saltans DSM 12145]
          Length = 337

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 110/234 (47%), Gaps = 16/234 (6%)

Query: 126 HLSHPQSLKILSETFLK-TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           HL+ P   K+L +   K TN +     F S  G  F D  L ++ M   L+F +      
Sbjct: 112 HLNQP---KLLDKYLDKLTNLVQ--ELFPSFLGGAF-DVFLGLVLMYFILYFMFVQSERF 165

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              L      L   + ++ +  +     S  +G  IIA+ +G ++  A+++AG+   +  
Sbjct: 166 ENGLIKYAP-LREYHTRQFAEELKNTTYSNVIGQGIIALIQGSLVSLAFFIAGLEDAIFW 224

Query: 245 GVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           GV++  ++ +P  GAP+     ++ L + G+ +NA  + ++  + L  +D  +R  +   
Sbjct: 225 GVVSVFLSFMPVIGAPLVTLPAAVILYLNGDHYNAIFIVMFTLLILINIDNVIRFMINKH 284

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL----MALIAVIWKESIMAIKENK 353
                 + T  G++ G+   G +G+  GP+L    M LIA I+++ I A  ENK
Sbjct: 285 FADTHPIVTVIGVIIGIPLFGFVGIVFGPLLLLWFMHLIA-IYEDDIKA--ENK 335


>gi|218129309|ref|ZP_03458113.1| hypothetical protein BACEGG_00886 [Bacteroides eggerthii DSM 20697]
 gi|317475278|ref|ZP_07934544.1| hypothetical protein HMPREF1016_01524 [Bacteroides eggerthii
           1_2_48FAA]
 gi|217988486|gb|EEC54807.1| hypothetical protein BACEGG_00886 [Bacteroides eggerthii DSM 20697]
 gi|316908532|gb|EFV30220.1| hypothetical protein HMPREF1016_01524 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 336

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 88/188 (46%), Gaps = 8/188 (4%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +PR           + +++  ++  L+F    G  + Q ++ +     P        +V 
Sbjct: 131 LPRIGQTLMGGISSFAVNMFVLVFVLYFMLIGGKKMEQYVNGI----LPFNETNTQNVVH 186

Query: 209 KV---IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTA 264
           ++   +RS  +G+ ++AI +G V    YW+ G P+ +  G +T   +++P  G  + +  
Sbjct: 187 EINMIVRSNAIGIPLLAIIQGGVAMIGYWIFGAPNILFSGFLTGFASVVPMVGTALIWVP 246

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           ++IY+ + GN   A  L  +GA+ +  +D  +R  +      +  L T FG+V G+   G
Sbjct: 247 IAIYMALIGNWLQAIGLAAFGALVISQLDNLIRFIIQKKMADIHPLITIFGVVIGLSLFG 306

Query: 325 LLGLFIGP 332
            +G+  GP
Sbjct: 307 FMGVIFGP 314


>gi|324497297|gb|ADY39451.1| putative inner membrane protein [bacterium enrichment culture clone
           P43-9H:P46-4G]
          Length = 261

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 4/132 (3%)

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R+  LG+ + A+ + ++ G    ++GVP      V+  +  +   G  +      I+L  
Sbjct: 102 RAVALGVVVTALVQAVLGGIGLAISGVPYATVFTVVMLMTCLAQLGPLLVLVPSIIWLYW 161

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
            G+    T L +W  + +  +D  +RP L+     LP +    G++GG+   G++GLFIG
Sbjct: 162 TGDTTWGTVLLVWSCV-VGTMDNVIRPILIRMGADLPLILILSGVIGGLIAFGMIGLFIG 220

Query: 332 PVLMALIAVIWK 343
           PVL+   AV W+
Sbjct: 221 PVLL---AVTWR 229


>gi|254883091|ref|ZP_05255801.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319643611|ref|ZP_07998231.1| transmembrane protein [Bacteroides sp. 3_1_40A]
 gi|254835884|gb|EET16193.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317384780|gb|EFV65739.1| transmembrane protein [Bacteroides sp. 3_1_40A]
          Length = 333

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 72/138 (52%), Gaps = 1/138 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAP 259
           K + + +  ++RS  +G+ ++A+ +G +    Y+L  VPS +  G +T    +IP  G  
Sbjct: 182 KNVLKEINMIVRSNAIGIPLLAVIQGGIATLGYYLFDVPSALLFGFLTCFATVIPIVGTA 241

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +  ++ YL + G+  +A  L L+  + +  +D  +R  L         L T FG+V G
Sbjct: 242 LVWFPLAAYLALSGDWTHAVGLLLYCGLIVTNIDNLIRFILQKKMADTHPLITIFGVVIG 301

Query: 320 VRTMGLLGLFIGPVLMAL 337
           +   G +G+  GP+L+++
Sbjct: 302 LSLFGFMGVIFGPLLLSI 319


>gi|150402118|ref|YP_001329412.1| hypothetical protein MmarC7_0191 [Methanococcus maripaludis C7]
 gi|150033148|gb|ABR65261.1| protein of unknown function UPF0118 [Methanococcus maripaludis C7]
          Length = 336

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 88/188 (46%), Gaps = 15/188 (7%)

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKIS---RIVPKVIRSTFLGMTIIAIGEGLVLGS 231
           ++F +DG+      D++  H+   Y  +     R + +  ++ F+   + A   GL+  +
Sbjct: 154 YYFLKDGYRFK---DAIMPHVPEVYHVQTELFIRKLHEAYKNLFVVNALTAFTVGLISIA 210

Query: 232 AYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
            +W  G+P+ V LG ++ I+ ++P  GG  I +  +S+Y +  G    A  LF +G I L
Sbjct: 211 GFWAIGIPNPVTLGALSGILTLLPIVGGWTI-YMPLSVYYVAVGMYSKAVLLFGFGVIFL 269

Query: 290 FIV-DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            +  D  +RP LV     +         + G   +G+ G  +GP++M     I++     
Sbjct: 270 SLAPDFAIRPRLVNHESSIHPALALVAFLMGPLALGVTGFALGPLIMGTFDAIFR----- 324

Query: 349 IKENKEKI 356
           +K  K+ I
Sbjct: 325 VKNGKDSI 332


>gi|150004610|ref|YP_001299354.1| putative transmembrane protein [Bacteroides vulgatus ATCC 8482]
 gi|294776726|ref|ZP_06742190.1| putative membrane protein [Bacteroides vulgatus PC510]
 gi|149933034|gb|ABR39732.1| putative transmembrane protein [Bacteroides vulgatus ATCC 8482]
 gi|294449381|gb|EFG17917.1| putative membrane protein [Bacteroides vulgatus PC510]
          Length = 333

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 72/138 (52%), Gaps = 1/138 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAP 259
           K + + +  ++RS  +G+ ++A+ +G +    Y+L  VPS +  G +T    +IP  G  
Sbjct: 182 KNVLKEINMIVRSNAIGIPLLAVIQGGIATLGYYLFDVPSALLFGFLTCFATVIPIVGTA 241

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +  ++ YL + G+  +A  L L+  + +  +D  +R  L         L T FG+V G
Sbjct: 242 LVWFPLAAYLALSGDWTHAVGLLLYCGLIVTNIDNLIRFILQKKMADTHPLITIFGVVIG 301

Query: 320 VRTMGLLGLFIGPVLMAL 337
           +   G +G+  GP+L+++
Sbjct: 302 LSLFGFMGVIFGPLLLSI 319


>gi|225621492|ref|YP_002722751.1| hypothetical protein BHWA1_02594 [Brachyspira hyodysenteriae WA1]
 gi|225216313|gb|ACN85047.1| predicted transmembrane protein of unknown function [Brachyspira
           hyodysenteriae WA1]
          Length = 372

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 78/173 (45%), Gaps = 8/173 (4%)

Query: 193 EHLFPAYWKKISRIVPKV---IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
             L P   K + R++ +V   I+    G     I +G      Y + GV +      +T 
Sbjct: 196 RTLVPIDEKYLDRLIKQVSEGIKGIVFGNLFTGIFQGFCAFIVYTVFGVTNSFTFAFLTI 255

Query: 250 IMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I + +P  G  I +  + I  LI G I  A    +     + I D  +RP L+G  I+L 
Sbjct: 256 IASFMPIIGTTIIWIPLGILFLINGEIIRAIIFIVCSWFFITIPDNFVRPLLLGNRIELH 315

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGP---VLMALIAVIWKESIMAIKENKEKISS 358
            L  FF ++GGV   GL G+ +GP   +L   I  I+ E  + ++  KE+I+ 
Sbjct: 316 PLFIFFAILGGVLFFGLSGIILGPLSFILFFEIMKIYNEERL-LEAKKERIAK 367


>gi|325300722|ref|YP_004260639.1| hypothetical protein Bacsa_3645 [Bacteroides salanitronis DSM
           18170]
 gi|324320275|gb|ADY38166.1| protein of unknown function UPF0118 [Bacteroides salanitronis DSM
           18170]
          Length = 331

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 87/200 (43%), Gaps = 12/200 (6%)

Query: 141 LKTNGIDFIPRFASRFGMIFL----DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           L    + FI   AS  G   +    D  +++   I+ LFF   +G     +++     L 
Sbjct: 115 LSEKNLSFIITQASSIGHSIMTGVSDLIINLAVAIMLLFFMLWEG----DKMEQFISELL 170

Query: 197 PAYWKKISRIVPKV---IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           P        ++ K+   +RS  +G+ ++AI +G +    Y L   P+ V   ++T   ++
Sbjct: 171 PFEENNKREVLQKIQLIVRSNAIGIPLLAIIQGFISLFGYLLCHAPNPVLTAMLTGFASI 230

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +P  G  + +  V+ Y  I G+  +   L  +G I +   D  +R  L      +  L T
Sbjct: 231 VPLVGTALVWVPVTAYFFIIGDWVHGLILLAYGGIIISQCDNLIRFILQKKMANIHPLIT 290

Query: 313 FFGLVGGVRTMGLLGLFIGP 332
            FG+V G+   G +G+  GP
Sbjct: 291 IFGVVAGLPIFGFMGIIFGP 310


>gi|317491965|ref|ZP_07950399.1| hypothetical protein HMPREF0864_01163 [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920086|gb|EFV41411.1| hypothetical protein HMPREF0864_01163 [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 366

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 98/240 (40%), Gaps = 6/240 (2%)

Query: 99  ANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFG 157
           A    +P   WL  IP  G      W   L+   S+ I          I +    A+  G
Sbjct: 103 AKNWSVPDLLWLKSIPAVGHKLYNSWHSMLAGGGSIIIAKIQPYIGQTITWFVAQAAHVG 162

Query: 158 MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG 217
              L   L ++F  +     Y  G  ++  +      L          +  + IR+  LG
Sbjct: 163 SFVLHCSLMLLFSAL----LYSRGEDVALGIRHFAIRLGSDRGDAAVVLAAQAIRAVALG 218

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFN 277
           + + A+ + ++ G    ++G+     L V+  I  +   G  +      I+L   G+   
Sbjct: 219 VVVTALVQSVLGGIGLAISGIGYATLLTVLMFICCLAQLGPLLVLVPAIIWLYWTGDTTW 278

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
            T L +W  + +  +D  LRP L+     LP +    G++GG+   G++GLFIGPV++A+
Sbjct: 279 GTVLLVWSCV-VGTLDNFLRPALIRMGADLPMILILSGVIGGLLAFGMIGLFIGPVVLAV 337


>gi|283833356|ref|ZP_06353097.1| putative membrane protein [Citrobacter youngae ATCC 29220]
 gi|291070999|gb|EFE09108.1| putative membrane protein [Citrobacter youngae ATCC 29220]
          Length = 366

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 68/127 (53%), Gaps = 3/127 (2%)

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLL 270
           R+  LG+ + A+ + ++ G    + GVP    L V+  +  ++  G  P+   A+ I+L 
Sbjct: 212 RAVALGVVVTALVQAVLGGIGLAVTGVPYATLLAVLMILSCLVQLGPLPVLVPAI-IWLY 270

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             G+    T L +W  + +  +D  +RP L+     LP +    G++GG+   G++GLFI
Sbjct: 271 WTGDSTWGTVLLVWSGV-VGTLDNVIRPMLIRMGADLPLILILSGVIGGLIAFGMIGLFI 329

Query: 331 GPVLMAL 337
           GPV++A+
Sbjct: 330 GPVVLAV 336


>gi|218247850|ref|YP_002373221.1| hypothetical protein PCC8801_3084 [Cyanothece sp. PCC 8801]
 gi|257060829|ref|YP_003138717.1| hypothetical protein Cyan8802_3036 [Cyanothece sp. PCC 8802]
 gi|218168328|gb|ACK67065.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 8801]
 gi|256590995|gb|ACV01882.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 8802]
          Length = 363

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 98/209 (46%), Gaps = 10/209 (4%)

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
            A+  G++ L + +SII   I +     +   ++++   +   L P   +    +    I
Sbjct: 156 LAANMGLLLLKFIVSIIIAGILMI----NAQGLNRRASQVILRLTPQQGQGFLELATATI 211

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           RS   G+  +AI + L++     +A +P    L +++ ++ +I  G  I      IY   
Sbjct: 212 RSVTRGIIGVAILQTLLIALGLMVAKIPFAGLLALLSLVLCIIQIGPGIVVLGCIIYAWS 271

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
                 A    LW  +   +VD  L+P L+   + +P L    G++GG    G+LGLFIG
Sbjct: 272 TMGTLGALLFTLW-MVPTTLVDNVLKPILMAQGLPVPTLIILIGVLGGTLVHGILGLFIG 330

Query: 332 PVLMAL-----IAVIWKESIMAIKENKEK 355
           PV+++L     +A + +ES++    ++E+
Sbjct: 331 PVILSLGYQLIVAWVNQESVVISTISEEE 359


>gi|212693909|ref|ZP_03302037.1| hypothetical protein BACDOR_03431 [Bacteroides dorei DSM 17855]
 gi|237708530|ref|ZP_04539011.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237724003|ref|ZP_04554484.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265751306|ref|ZP_06087369.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|212663441|gb|EEB24015.1| hypothetical protein BACDOR_03431 [Bacteroides dorei DSM 17855]
 gi|229437667|gb|EEO47744.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229457459|gb|EEO63180.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263238202|gb|EEZ23652.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 333

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 72/138 (52%), Gaps = 1/138 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAP 259
           K + + +  ++RS  +G+ ++A+ +G +    Y+L  VPS +  G +T    +IP  G  
Sbjct: 182 KNVLKEINMIVRSNAIGIPLLAVIQGGIATLGYYLFDVPSALLFGFLTCFATVIPIVGTA 241

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +  ++ YL + G+  +A  L L+  + +  +D  +R  L         L T FG+V G
Sbjct: 242 LVWFPLAAYLALSGDWTHAIGLLLYCGLIVTNIDNLIRFILQKKMADTHPLITIFGVVIG 301

Query: 320 VRTMGLLGLFIGPVLMAL 337
           +   G +G+  GP+L+++
Sbjct: 302 LSLFGFMGVIFGPLLLSI 319


>gi|116748040|ref|YP_844727.1| hypothetical protein Sfum_0593 [Syntrophobacter fumaroxidans MPOB]
 gi|116697104|gb|ABK16292.1| protein of unknown function UPF0118 [Syntrophobacter fumaroxidans
           MPOB]
          Length = 376

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 145/345 (42%), Gaps = 46/345 (13%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I+ + ++    L  F   ++ ALI+  T +P++     +        A +  +  + L 
Sbjct: 28  LILVLAMLCYQVLSPFLTLMVWALILAVTIFPLHQFLAGRIGGRQGLAAALLVIVGLMLI 87

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-------GMWASELWTKHL 127
           +VP   L       + +LV+  V  N   IP PR     PG       G    ++W++  
Sbjct: 88  VVPTAMLMSSLGDSVHQLVND-VQNNSLKIPAPR-----PGVEGWPVVGKKVHDIWSRAY 141

Query: 128 SH----PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY---RD 180
           +      QS++       KT  + F+   A       L +  S I   I + F     R 
Sbjct: 142 ADLPALVQSMQPKIGELAKT-ALGFVAGIAGG----LLQFIASFIVAGIIMAFGQSGGRG 196

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
             +I +++  +G         + +R+    IR+   G+  +A  + +++G A  ++GVP 
Sbjct: 197 SLAIFERI--VGRE----RGGEFARLSTSTIRAVSQGVIGVAFIQAIIVGLALLVSGVPW 250

Query: 241 HVALGVITAIM--AMIPGGAPISFTAVSIYLLIKGNIFNATC------LFLWGAIELFIV 292
             AL +I  ++  A IP  A I      +Y+ + G+  NA        L L G     + 
Sbjct: 251 AGALALIVLVLGIAQIP--ALIVTLPAIVYIWMSGHYGNAAAVAYTVVLILSG-----MT 303

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           D  L+P ++G  +  P      G +GG+ T G+LG+F+G  L+ L
Sbjct: 304 DNVLKPLMLGRGVDAPMPVILLGALGGMGTAGILGMFVGATLLTL 348


>gi|237731304|ref|ZP_04561785.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226906843|gb|EEH92761.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 369

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 68/127 (53%), Gaps = 3/127 (2%)

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLL 270
           R+  LG+ + A+ + ++ G    + GVP    L V+  +  ++  G  P+   A+ I+L 
Sbjct: 212 RAVALGVVVTALVQAVLGGIGLAVTGVPYATLLAVLMILSCLVQLGPLPVLIPAI-IWLY 270

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             G+    T L +W  + +  +D  +RP L+     LP +    G++GG+   G++GLFI
Sbjct: 271 WTGDSTWGTVLLVWSGV-VGTLDNVIRPMLIRMGADLPLILILSGVIGGLIAFGMIGLFI 329

Query: 331 GPVLMAL 337
           GPV++A+
Sbjct: 330 GPVVLAV 336


>gi|134045617|ref|YP_001097103.1| hypothetical protein MmarC5_0574 [Methanococcus maripaludis C5]
 gi|132663242|gb|ABO34888.1| protein of unknown function UPF0118 [Methanococcus maripaludis C5]
          Length = 321

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 97/198 (48%), Gaps = 14/198 (7%)

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI----VPKVIRSTFLGMTI 220
           + ++F+    F+F +DG  I    DS   ++ P   K+ + +    + K +++ F+G  +
Sbjct: 131 MRLLFLSFMTFYFLKDGDKIK---DSFLLYI-PKEKKRNTLLFVNEIHKALKTLFIGNVV 186

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNA 278
            ++  G +    YWL G+P+ + LG ++ I+ ++P  GG  I +  +++Y L+ G     
Sbjct: 187 TSLIVGFISIIGYWLIGLPNPITLGALSGILNILPVVGGWTI-YVPLTVYYLLTGEFTKG 245

Query: 279 TCLFLWGAIELFIV-DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
             L  +G + L +  D  +RP ++     L         + G    G+ GL IGP+++AL
Sbjct: 246 ILLGFFGIVFLSLAPDFAIRPRVISKDGDLHPALVLIAFLIGPLVFGIPGLAIGPIIVAL 305

Query: 338 IAVIWKESIMAIKENKEK 355
           +  I K  +  I E+ E 
Sbjct: 306 VYAIHK--VRKIVESGEN 321


>gi|300710665|ref|YP_003736479.1| hypothetical protein HacjB3_06480 [Halalkalicoccus jeotgali B3]
 gi|299124348|gb|ADJ14687.1| hypothetical protein HacjB3_06480 [Halalkalicoccus jeotgali B3]
          Length = 325

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 135/308 (43%), Gaps = 26/308 (8%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVI-ATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           VL A++I +   P+Y   +    E+   LA++ A   V+ L    LL +     L++ + 
Sbjct: 23  VLLAVLIAYLLTPVYRRLVPVTGETGGALALMGAATGVVILPFAALLSVVASDALDLAQR 82

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
           +S                SDI       E     ++     ++   T L T G +F    
Sbjct: 83  LSD---------------SDID-----LEEVESVIAASTGREVDLSTTLGTAGENFAGVL 122

Query: 153 ---ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
              AS    +F    + I      LFFF RDG   ++ L  +   L      +++  V  
Sbjct: 123 VGNASDLVGVFTHALIGITLSAFLLFFFLRDGRYFTEWLFEV-TPLPDVVLGELATNVDD 181

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIY 268
           ++ +  +G  +++  +GL+ G    + G+P+ V   V   ++A++P  GA + +   ++Y
Sbjct: 182 LMWAVLVGHVLVSAIQGLLAGIGLAVTGIPNAVFWTVAMMLLALLPVVGAFLVWGPAAVY 241

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L+  G+      LFL+G   + + D  LR  LV    +L       G+VGG+  +G++GL
Sbjct: 242 LVALGDPVAGGGLFLYGMTVVGLSDNYLRSILVDRRAQLNPATIMLGVVGGLYLLGVMGL 301

Query: 329 FIGPVLMA 336
           F GPV++ 
Sbjct: 302 FFGPVIVG 309


>gi|240103191|ref|YP_002959500.1| hypothetical protein TGAM_1134 [Thermococcus gammatolerans EJ3]
 gi|239910745|gb|ACS33636.1| Conserved hypothetical protein [Thermococcus gammatolerans EJ3]
          Length = 335

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 101/215 (46%), Gaps = 8/215 (3%)

Query: 138 ETFLKTNGIDFIPR---FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           +TF        +P+   + S F      Y L +I  + A ++    G  + + + SL   
Sbjct: 109 QTFFGQVQSQIVPKLTDYVSSFTFSVPKYLLQLIVFLFAFYYALVYGEKLREFILSLVPE 168

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP---SHVALGVITAIM 251
               +  +I     K + +      ++ + +G ++   Y + GV    + +  G +T + 
Sbjct: 169 NQAPFIVEILNRTDKTLDALVRAWLLLNVAKGFLMTIGYIIFGVGDVYTAIIAGFLTFLF 228

Query: 252 AMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLVGGPIKLPF 309
           + +P     + + A +IYL +KG++  A  + ++GA+ +  + D T+RP LV    +L  
Sbjct: 229 SFVPLLEGWMLWVAGAIYLYMKGSLLGAIGIAVYGAVLVSPLPDYTVRPMLVAKDAELDE 288

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              F G++GG    GL GL +GPV++++  V+ KE
Sbjct: 289 TLVFIGMLGGTWAFGLKGLLLGPVILSIALVLLKE 323


>gi|118589355|ref|ZP_01546761.1| hypothetical protein SIAM614_07418 [Stappia aggregata IAM 12614]
 gi|118438055|gb|EAV44690.1| hypothetical protein SIAM614_07418 [Stappia aggregata IAM 12614]
          Length = 372

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 72/341 (21%), Positives = 147/341 (43%), Gaps = 17/341 (4%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           SL  +  FF  ++ A+++    +P++    ++        AV+ T+  + + I P+  L 
Sbjct: 42  SLQLVAPFFLFLVWAVVLTVALYPVFGWLTARLGGRKVLAAVLITLCCLAIVIGPVAVLV 101

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQSLKILSETFL 141
              +  ++     V        P+P  L+ +P  G   SE+W   L+     + L + F 
Sbjct: 102 VSLVDTLQGWYHGVAGGVLKLPPLPEKLAALPVVGAKLSEIW--QLAG----QGLEQVFA 155

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF---FYRDGFSISQQLDSLGEHLFPA 198
           K  G   +P   SR   +      S++F I+++      +    ++++      + +   
Sbjct: 156 KV-GPTLVPA-GSRILGVLASLSGSVLFFIVSIILAGCLFVPAPALAKGAKLFADRIIAP 213

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              +   +    IR+   G+  +A+ +GL+ G       VP    L  +  I+ ++  G 
Sbjct: 214 RGSEFVDLAGATIRNVSRGVIGVAVVQGLLTGIVLIAFSVPLAGVLTFVALILCIVQIGP 273

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            +      I+     ++  A  LF    + + ++D  LRP L+   + +P L    G++G
Sbjct: 274 ALVIVPTIIWAWSSWDLVPA-LLFTVLMVPVMLIDNVLRPILMSRGLNVPMLVILIGVLG 332

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G    GL+GLF+GPV++A    ++ E ++A  +  EK S+ 
Sbjct: 333 GTIAYGLIGLFLGPVILA----VFYELVIAWVKAGEKRSAE 369


>gi|313497077|gb|ADR58443.1| Permease [Pseudomonas putida BIRD-1]
          Length = 365

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 7/156 (4%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           K ++ +    IR+   G+  IA  + L++G  + + GVP    L ++  ++ +    A +
Sbjct: 207 KPLATLCTATIRAVAQGVIGIAFIQMLLIGVGFVVKGVPGAGMLAIVILMLGIAQAPATL 266

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIV---DKTLRPFLVGGPIKLPFLPTFFGLV 317
               V IY+        AT +F   AI  F+    D  L+P L+G  + +P      G +
Sbjct: 267 VTLPVIIYVFNAEGFTVATIIF---AIYTFVAGLADNVLKPLLLGRGVDVPMPVVLIGAL 323

Query: 318 GGVRTMGLLGLFIGPVLMALIAVI-WKESIMAIKEN 352
           GG+   G++GLFIGPV++ +  V+ W+   + + E 
Sbjct: 324 GGMVVKGIIGLFIGPVILGVTYVLFWQWVALQVPEQ 359


>gi|260664188|ref|ZP_05865041.1| permease [Lactobacillus jensenii SJ-7A-US]
 gi|260562074|gb|EEX28043.1| permease [Lactobacillus jensenii SJ-7A-US]
          Length = 395

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 86/190 (45%), Gaps = 11/190 (5%)

Query: 164 CLSIIFMII-----ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
            +++IFM +      LF+  +DG  ++  L       +   + ++   + + I +   G 
Sbjct: 175 VITMIFMTLLTAPFVLFYMLKDGHQLNGYLTKFAPRRWQDSFSRLLHDINEAISAYIRGQ 234

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIK--GNI 275
             +A+  G++    Y + G+P   AL V+ A M +IP  G  I+   V I   I   G +
Sbjct: 235 ITVAVWVGIIYAIGYNIIGLPYGSALAVLAAFMLLIPYFGTFIALIPVLIIASITSWGML 294

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
            N   +F   AIE  I  + + P +VG  +K+  + T   L+G     GL G+  G  + 
Sbjct: 295 INVLIVF---AIEQTIETRFISPIIVGNKMKMHPITTILLLIGASAVWGLWGVIFGIPIY 351

Query: 336 ALIAVIWKES 345
           A++ ++   S
Sbjct: 352 AVVKIVVSRS 361


>gi|297206302|ref|ZP_06923697.1| permease [Lactobacillus jensenii JV-V16]
 gi|297149428|gb|EFH29726.1| permease [Lactobacillus jensenii JV-V16]
          Length = 401

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 11/190 (5%)

Query: 164 CLSIIFMII-----ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
            +++IFM +      LF+  +DG  ++  L       +   + ++   + + I +   G 
Sbjct: 181 VITMIFMTLLTAPFVLFYMLKDGHQLNGYLTKFAPRRWQDSFSRLLHDINEAISAYIRGQ 240

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIK--GNI 275
             +A+  G++    Y + G+P   AL V+ A M +IP  G  I+   V I   I   G +
Sbjct: 241 ITVAVWVGIIYAIGYNIIGLPYGSALAVLAAFMLLIPYFGTFIALIPVLIIASITSWGML 300

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
            N   +F   AIE  I  + + P +VG  +K+  + T   L+G     GL G+  G  + 
Sbjct: 301 INVLIVF---AIEQTIETRFISPIVVGNKMKMHPITTILLLIGASAVWGLWGVIFGIPIY 357

Query: 336 ALIAVIWKES 345
           A++ +I   S
Sbjct: 358 AVVKIIVSRS 367


>gi|290770140|gb|ADD61900.1| putative protein [uncultured organism]
          Length = 310

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 88/191 (46%), Gaps = 8/191 (4%)

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           I  +PR           + ++I  ++  L+F    G  + Q ++ L     P        
Sbjct: 98  ISILPRIGQAIMGGISSFAVNIFVLVFVLYFMLIGGKKMEQYVNDL----LPFNDDNTQN 153

Query: 206 IVPKV---IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPIS 261
           ++ ++   +RS  +G+ ++A+ +G V    YW+ G P+ +  G +T   ++IP  G  + 
Sbjct: 154 VIHEINMIVRSNAIGIPLLAVIQGGVAMIGYWIFGAPNILFAGFLTCFASIIPMVGTALV 213

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +  +++Y+ + GN   A  L ++G   +  +D  +R  +      +  L T FG+V G+ 
Sbjct: 214 WFPIAVYMALIGNWVQAIGLAIYGGAVISQLDNLIRFIIQKKMADIHPLITVFGVVIGLS 273

Query: 322 TMGLLGLFIGP 332
             G +G+  GP
Sbjct: 274 LFGFMGVIFGP 284


>gi|255008391|ref|ZP_05280517.1| putative transmembrane protein [Bacteroides fragilis 3_1_12]
 gi|313146114|ref|ZP_07808307.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134881|gb|EFR52241.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 323

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 86/177 (48%), Gaps = 2/177 (1%)

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
            + +++  ++  L+F    G  +   +D +         ++++  +  ++RS  +G+ ++
Sbjct: 131 SFAINLFVLVFVLYFMLIGGTKMESYIDDI-LPFNEKNTREVTHNINMIVRSNAIGIPLL 189

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATC 280
           A+ +G V    Y++ G P+   +GV+T    +IP  G  + +  V+ YL + G   NA  
Sbjct: 190 AVIQGGVALIGYFIFGAPNAWLVGVLTCFATIIPMVGTALVWFPVAAYLALTGEWANAIG 249

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           L  +G I +   D  +R  L         L T FG+V G+   G +G+  GP++++L
Sbjct: 250 LAAYGGIVVSQCDNLIRFILQKKMADTHPLITIFGVVIGLPLFGFMGVIFGPLILSL 306


>gi|299538203|ref|ZP_07051488.1| hypothetical protein BFZC1_19390 [Lysinibacillus fusiformis ZC1]
 gi|298726405|gb|EFI66995.1| hypothetical protein BFZC1_19390 [Lysinibacillus fusiformis ZC1]
          Length = 352

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 126/271 (46%), Gaps = 43/271 (15%)

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF------ 140
           L + +++++++L ++     P ++S +      S++W   L   +++   +E F      
Sbjct: 79  LSITQIMTQIILLSKQA---PYYISKL------SDMW---LHMQENISKYTEDFPPEVSA 126

Query: 141 -LKTNGIDFIPRFASRFGMIFLDYC-------------LSIIFMIIALFFFYRDGFSISQ 186
            L+   +DFI +    F + F +Y              +S++  +IALF F  D   + Q
Sbjct: 127 SLQKTTMDFIKKVEESF-LSFFNYSKVSAFFSEIPSLFISLLVYMIALFLFMLDLPKLKQ 185

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV---PSH-V 242
                 ++L P   KKI  I+ ++  +TF G     +    ++G    +  +   P + V
Sbjct: 186 ---ITYKYLKPNTAKKIKIILNRLKDATF-GYMKAHLFVSFIIGGVTLIGLLLIQPKYAV 241

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            + +I  ++ ++P  G+ I      +Y L+ GN   A  LF+  AI L I+ + + P L+
Sbjct: 242 TMTIIIWLIDIVPFLGSIIILAPWGLYHLLMGNTSIAVKLFILAAI-LLIIRRVVEPKLM 300

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
           G  I L  LPT   +  G++  G++GL +GP
Sbjct: 301 GDHIGLSTLPTLISMFIGLQLFGIIGLLVGP 331


>gi|238854901|ref|ZP_04645231.1| transport protein [Lactobacillus jensenii 269-3]
 gi|282931613|ref|ZP_06337106.1| permease [Lactobacillus jensenii 208-1]
 gi|238832691|gb|EEQ24998.1| transport protein [Lactobacillus jensenii 269-3]
 gi|281304224|gb|EFA96333.1| permease [Lactobacillus jensenii 208-1]
          Length = 401

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 86/190 (45%), Gaps = 11/190 (5%)

Query: 164 CLSIIFMII-----ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
            +++IFM +      LF+  +DG  ++  L       +   + ++   + + I +   G 
Sbjct: 181 VITMIFMTLLTAPFVLFYMLKDGHQLNGYLTKFAPRRWQDSFSRLLHDINEAISAYIRGQ 240

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIK--GNI 275
             +A+  G++    Y + G+P   AL V+ A M +IP  G  I+   V I   I   G +
Sbjct: 241 ITVAVWVGIIYAIGYNIIGLPYGSALAVLAAFMLLIPYFGTFIALIPVLIIASITSWGML 300

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
            N   +F   AIE  I  + + P +VG  +K+  + T   L+G     GL G+  G  + 
Sbjct: 301 INVLIVF---AIEQTIETRFISPIIVGNKMKMHPITTILLLIGASAVWGLWGVIFGIPIY 357

Query: 336 ALIAVIWKES 345
           A++ ++   S
Sbjct: 358 AVVKIVVSRS 367


>gi|325959136|ref|YP_004290602.1| hypothetical protein Metbo_1390 [Methanobacterium sp. AL-21]
 gi|325330568|gb|ADZ09630.1| protein of unknown function UPF0118 [Methanobacterium sp. AL-21]
          Length = 349

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 97/197 (49%), Gaps = 11/197 (5%)

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY--WKKISRIVPKVIRSTFLGMTIIAI 223
            +I ++ ++F+F ++G     +     E L P    + +I   V  +++S  +   + A+
Sbjct: 159 DVIVLLFSVFYFAKEG----DKFVGFIEDLLPKTPTFSEIYSEVDAILKSIMITNILCAV 214

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLF 282
             GL+    Y++ G P  + LG++TA    +P   P I + A+ +  ++ GN      + 
Sbjct: 215 ILGLLSVVLYYILGYPYILLLGILTAFSEFVPVVGPWIVYGALGVVDILTGNPVRGVIVI 274

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           + G +   +VD  +RP L G    +  L    G + G  T+GL GLFIGP+++ +  V++
Sbjct: 275 VVGWLIDTVVDMYIRPKLAGEFTNVHPLIFLVGFLFGALTLGLPGLFIGPLIVGVTYVLF 334

Query: 343 KESIMAIKENKEKISSN 359
           ++     +E + KI+  
Sbjct: 335 EKY----REERLKINQQ 347


>gi|256851487|ref|ZP_05556876.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
 gi|260660908|ref|ZP_05861823.1| permease [Lactobacillus jensenii 115-3-CHN]
 gi|256616549|gb|EEU21737.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
 gi|260548630|gb|EEX24605.1| permease [Lactobacillus jensenii 115-3-CHN]
          Length = 395

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 11/190 (5%)

Query: 164 CLSIIFMII-----ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
            +++IFM +      LF+  +DG  ++  L       +   + ++   + + I +   G 
Sbjct: 175 VITMIFMTLLTAPFVLFYMLKDGHQLNGCLTKFAPRRWQDSFSRLLHDINEAISAYIRGQ 234

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIK--GNI 275
             +A+  G++    Y + G+P   AL V+ A M +IP  G  I+   V I   I   G +
Sbjct: 235 ITVAVWVGIIYAIGYNIIGLPYGSALAVLAAFMLLIPYFGTFIALIPVLIIASITSWGML 294

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
            N   +F   AIE  I  + + P +VG  +K+  + T   L+G     GL G+  G  + 
Sbjct: 295 INVLIVF---AIEQTIETRFISPIVVGNKMKMHPITTILLLIGASAVWGLWGVIFGIPIY 351

Query: 336 ALIAVIWKES 345
           A++ +I   S
Sbjct: 352 AVVKIIVSRS 361


>gi|282933487|ref|ZP_06338863.1| permease [Lactobacillus jensenii 208-1]
 gi|281302418|gb|EFA94644.1| permease [Lactobacillus jensenii 208-1]
          Length = 401

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 11/190 (5%)

Query: 164 CLSIIFMII-----ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
            +++IFM +      LF+  +DG  ++  L       +   + ++   + + I +   G 
Sbjct: 181 VITMIFMTLLTAPFVLFYMLKDGHQLNGCLTKFAPRRWQDSFSRLLHDINEAISAYIRGQ 240

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIK--GNI 275
             +A+  G++    Y + G+P   AL V+ A M +IP  G  I+   V I   I   G +
Sbjct: 241 ITVAVWVGIIYAIGYNIIGLPYGSALAVLAAFMLLIPYFGTFIALIPVLIIASITSWGML 300

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
            N   +F   AIE  I  + + P +VG  +K+  + T   L+G     GL G+  G  + 
Sbjct: 301 INVLIVF---AIEQTIETRFISPIVVGNKMKMHPITTILLLIGASAVWGLWGVIFGIPIY 357

Query: 336 ALIAVIWKES 345
           A++ +I   S
Sbjct: 358 AVVKIIVSRS 367


>gi|126436920|ref|YP_001072611.1| hypothetical protein Mjls_4349 [Mycobacterium sp. JLS]
 gi|126236720|gb|ABO00121.1| protein of unknown function UPF0118 [Mycobacterium sp. JLS]
          Length = 400

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 68/330 (20%), Positives = 144/330 (43%), Gaps = 33/330 (10%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           YFL+GFF  ++ A +  +   P+Y     ++   +   A +  ++ M   I+P   + + 
Sbjct: 34  YFLRGFFILIVVAAVGAYLFAPLYERL--RRRFGTGLSATLTLLAAMLTVIIPATLVVFL 91

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWL--SDIP-----GGMWASELWTK------HLSHPQ 131
            ++++ ++V+ V   NQ       W+  +D+         +A++L  K       L+ P 
Sbjct: 92  AIVQITQMVTTV---NQ-------WMATTDVSTLGDRAMTFANDLIEKVPFLDFRLT-PD 140

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL-FFFYRDGF-SISQQLD 189
           +L+    T  +  G   +       G +      ++IF+ + +     RD   ++ ++L+
Sbjct: 141 TLRDGVVTVSQRVGEWLLGVLQGAVGGVLGALAATVIFLYVFISLLVNRDKIRTLIRRLN 200

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV-PSHVALGVIT 248
            LGE +   Y  K   +V   ++  F    +IA+ +G+    + ++AG         ++ 
Sbjct: 201 PLGEDITDLYLAKTGAMVKGTVKGQF----VIALCQGVAGAISIYVAGFHDGFFFFAIVL 256

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           + +++IP G+ I      I + + GN+     +  +  + +  +D  LRP LV    +L 
Sbjct: 257 SALSVIPLGSGILSIPFGIGMALFGNVIGGVFVVAFHLLVVTNIDNVLRPMLVPKAARLD 316

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
                  +  G+   G  G+ +GPVLM +I
Sbjct: 317 PALMLLAVFSGIAMFGFWGIVLGPVLMIII 346


>gi|257093350|ref|YP_003166991.1| hypothetical protein CAP2UW1_1757 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045874|gb|ACV35062.1| protein of unknown function UPF0118 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 377

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 157/375 (41%), Gaps = 65/375 (17%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIY---SSFISKKEESSTFLAVIATVSVM 71
           +++ ++L+  +F   F   +L ALI+  T +P++   +  I  K+  ++ L V+  ++V+
Sbjct: 28  LVLALVLLCYHFFSPFLTMMLWALILAVTIYPLHEMLAGRIGGKQGLASTLIVLVAIAVI 87

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP-RWLSDIPG-GMWASELWTK-HLS 128
              + P + L       + ELV K V  N   +P P   ++  P  G     +W++ H  
Sbjct: 88  ---VTPTIMLASQFGDSVHELV-KGVRDNTLEVPAPSEKVAAWPVVGKKVHAIWSQAHDD 143

Query: 129 HPQSLKILSETF--LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            P  +K +      L T  +  +        M  L + ++ I M          G S +Q
Sbjct: 144 LPALVKSMQPKIGELATKALGIVAGLGGGLLMFVLAFIVAGIMMAY--------GESGAQ 195

Query: 187 QLDSLGEHLFP-AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            + ++ E +F  A  K+ + +    +R+   G+  IA  + L++G +  +A VP    L 
Sbjct: 196 AMQAIFERVFGLARGKEFTNLSSATVRAVASGVIGIACIQALLIGVSLMIASVPFAGLLA 255

Query: 246 VITAIM--AMIPG----------------GAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
           VI  ++  A +P                  A +   A S+ L++ G              
Sbjct: 256 VIVLVLGVAQLPALLVTLPVIGWIWASGDYATVPAAAYSVLLVVGG-------------- 301

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL---IAVIWKE 344
              + D  L+P ++G  +  P      G +GG+ T G+LG+FIG   +AL   I + W  
Sbjct: 302 ---MADNVLKPIMLGRGVDAPMPVILIGALGGMATSGILGMFIGATALALGYQIFMRW-- 356

Query: 345 SIMAIKENKEKISSN 359
               + +N E++   
Sbjct: 357 ----VDDNPERVRQQ 367


>gi|148545994|ref|YP_001266096.1| hypothetical protein Pput_0748 [Pseudomonas putida F1]
 gi|148510052|gb|ABQ76912.1| protein of unknown function UPF0118 [Pseudomonas putida F1]
          Length = 365

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 1/153 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           K ++ +    IR+   G+  IA  + L++G  + + GVP    L ++  ++ +    A +
Sbjct: 207 KPLATLCTATIRAVAQGVIGIAFIQMLLIGVGFIVKGVPGAGMLAIVILMLGIAQAPATL 266

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
               V IY+        AT +F        + D  L+P L+G  + +P      G +GG+
Sbjct: 267 VTLPVIIYVFNAEGFTVATIIFAVYTFVAGLADNVLKPLLLGRGVDVPMPVVLIGALGGM 326

Query: 321 RTMGLLGLFIGPVLMALIAVI-WKESIMAIKEN 352
              G++GLFIGPV++ +  V+ W+   + + E 
Sbjct: 327 VVKGIIGLFIGPVILGVAYVLFWQWVALQVPEQ 359


>gi|145222657|ref|YP_001133335.1| hypothetical protein Mflv_2069 [Mycobacterium gilvum PYR-GCK]
 gi|145215143|gb|ABP44547.1| protein of unknown function UPF0118 [Mycobacterium gilvum PYR-GCK]
          Length = 391

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 75/351 (21%), Positives = 145/351 (41%), Gaps = 50/351 (14%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISK----KEESSTFLAVIATVSVMCLFIVPLLF 80
           YFL+ +   +  + ++ +  +P+Y    ++       ++T  A IA V +      PL  
Sbjct: 26  YFLRTYVLLIAVSAVLAYLFFPLYRRLRTRMGTGGAAATTLFAAIAIVGL------PLSG 79

Query: 81  LFYYGMLEMKELVSKVV--LANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + +   L++ ++VS +   +       + + L D    + A   +      P+S++    
Sbjct: 80  VVFLAFLQISQMVSGIGHWVEQTDLTALGQRLLDSGNELLARVPFVNFTLTPESVR---- 135

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLS------------IIFMII--ALFFFYRDGFSI 184
                   D I R     G I L +               IIF+ +  AL         +
Sbjct: 136 --------DAIGRLGQNAGEIALGFARDSVGGIVSTVTGVIIFLYVFLALLTNGDKVLDL 187

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + L+ LG+ +   Y  KI  +V   ++  F    IIA  +G+    + ++AG+ +   +
Sbjct: 188 FRDLNPLGDKVSDIYLAKIGAMVSATVKGQF----IIAACQGVAGAISVYIAGIHNGFFM 243

Query: 245 GVI-TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            VI   +++ IP G+ I    + I + I GN      + ++  I    +D  LRPFLV  
Sbjct: 244 FVIFLTVLSFIPLGSGIVVIPLGIGMAIFGNPVGGIFVVVFHIIATTNIDNLLRPFLVPR 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA-------VIWKESIM 347
              L        +  G++  G +G+ +GPVLM +I        V+++++ M
Sbjct: 304 SAHLHPALMLLAVFAGLQMFGFIGIVLGPVLMIVIVTTISVYRVVYRDAPM 354


>gi|94264995|ref|ZP_01288765.1| Protein of unknown function UPF0118 [delta proteobacterium MLMS-1]
 gi|94267189|ref|ZP_01290805.1| Protein of unknown function UPF0118 [delta proteobacterium MLMS-1]
 gi|93452098|gb|EAT02778.1| Protein of unknown function UPF0118 [delta proteobacterium MLMS-1]
 gi|93454542|gb|EAT04823.1| Protein of unknown function UPF0118 [delta proteobacterium MLMS-1]
          Length = 381

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 97/211 (45%), Gaps = 9/211 (4%)

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
            P+ L        +T G+ ++   AS +    + +  S   M I +FF   +      +L
Sbjct: 131 EPEQLGRTLADLARTAGL-YLYNQASGWAANVVMFVFSFFLMFITIFFLLIE----QDRL 185

Query: 189 DSLGEHLFPAYWKKISRIVPK---VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            +    L P   ++  R+  K   +  +  +G  I A+ +G+V G  + L G+   V  G
Sbjct: 186 LNYILRLSPLPDQQERRLFAKFDEITSAVLIGNGICAVIQGVVGGIIFALLGLGPPVLWG 245

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            I A++A +P  G  +     ++Y+  KG++     L +   +    ++  L+P LVG  
Sbjct: 246 AIMAVLAFLPIFGIGLVMVPAALYMFFKGSLAGGIALLVLYGVLAVSIEYALKPKLVGQR 305

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
           +++  L  F  ++GG+ + G LG+  GP+++
Sbjct: 306 VRMHTLLVFLSIIGGLSSFGFLGIIYGPLII 336


>gi|15669367|ref|NP_248172.1| hypothetical protein MJ_1177 [Methanocaldococcus jannaschii DSM
           2661]
 gi|8928508|sp|Q58578|Y1177_METJA RecName: Full=UPF0118 membrane protein MJ1177
 gi|1591804|gb|AAB99180.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 334

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 63/302 (20%), Positives = 144/302 (47%), Gaps = 29/302 (9%)

Query: 41  GFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN 100
            + + P+Y+  I +K+ + T  A +A    + ++I+P++ +  Y +L   E++      N
Sbjct: 39  AYMALPVYN--ILRKKFNKTISAGLA----ISIYILPIMTITIYALLTFMEIILSF---N 89

Query: 101 QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIF 160
              I    ++++I   ++ S +  + +++ Q +    + F+K      + +F+ +  +I 
Sbjct: 90  TKSIE--PYINEILS-IYNSFMLERIINNEQIIAKYIDEFIKY----LVSQFSGK--IID 140

Query: 161 LDYCLSIIFMIIAL-FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
           + Y +  + M++ L F+F RDG     +  +L     P  +K+  RI    +  ++  + 
Sbjct: 141 VGYLIVKVIMVLFLTFYFLRDG----DKAKNLIISFVPDEYKEKMRIYLSYLHDSYKNLF 196

Query: 220 IIAIGEGLVLGS----AYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGN 274
           I  +   +++       Y + GVP      +IT I A++P  G  + + +++IY  +  +
Sbjct: 197 ISCVSLSIIITILSYIGYLILGVPYAELFAIITGIFALLPILGGWMVYISIAIYFFLIHD 256

Query: 275 IFNATCLFLWGAIELFIV-DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
              A  +F++G + L I  D  +RP+LV   + +  +      +    ++GL G  IGP+
Sbjct: 257 YTKAVFMFIYGELFLSIAPDFVIRPYLVKKEVDIHPVLVVIAFLMAPLSLGLSGFAIGPL 316

Query: 334 LM 335
           ++
Sbjct: 317 VV 318


>gi|150400408|ref|YP_001324175.1| hypothetical protein Mevan_1671 [Methanococcus vannielii SB]
 gi|150013111|gb|ABR55563.1| protein of unknown function UPF0118 [Methanococcus vannielii SB]
          Length = 334

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 12/180 (6%)

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG+ I     S        +   + R V    +  F+G  + ++  G++    Y L GVP
Sbjct: 159 DGYKIKDIFLSYVPEDRKEHATLVIREVHAAFKILFIGNAVTSLCVGIISIIGYSLMGVP 218

Query: 240 SHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTL 296
           + + LG ++ I+ ++P  GG  I F  ++IY L+ G+I  +  + L+G I L +  D  +
Sbjct: 219 NSITLGALSGILNILPVVGGWTIYF-PLTIYYLLIGDITKSILILLFGIIFLSLAPDFAI 277

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           RP +V     L  +      + G    G+ GL IGP+++         ++ A+ + ++KI
Sbjct: 278 RPKIVAKSSDLHPVLVLIAFLVGPLAFGISGLAIGPIIVG--------TVYAVHKARQKI 329


>gi|254503591|ref|ZP_05115742.1| conserved domain protein, putative [Labrenzia alexandrii DFL-11]
 gi|222439662|gb|EEE46341.1| conserved domain protein, putative [Labrenzia alexandrii DFL-11]
          Length = 367

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 140/329 (42%), Gaps = 33/329 (10%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISK----KEESSTFLA------VIATVSVMC 72
           SL  +  FFA +L A+++    +P Y+    K    K  S+T L       VI  V+V+ 
Sbjct: 42  SLQLVAPFFAFLLWAVVLTVALYPAYAWLTGKLGGRKVLSATILTLIGLGIVIGPVAVLV 101

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQ 131
           + +V  L  FY G+      V           P+P  L+++P  G   +E W   L+  Q
Sbjct: 102 VSLVETLQRFYEGVTSGAISVP----------PLPPKLAELPMVGEKIAEFW--QLAS-Q 148

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF---FYRDGFSISQQL 188
           SL    E FL   G    P   ++   +      S++F I+++      +  G +++   
Sbjct: 149 SL----EQFLTKIGPMVAPA-GTKILSVLASLSGSVLFFIVSIILSGCLFVPGPALASGA 203

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
               + +      +   +    IR+   G+  +A+ +GL+ G       VP    L    
Sbjct: 204 KRFADRIIAPRGGEFVDLAGATIRNVSRGVIGVAVIQGLLTGVILIAFAVPLAGLLTFAA 263

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ +I  G  +      I+      +  A  LF    + + +VD  LRP L+   + +P
Sbjct: 264 LILCIIQIGPALVILPTIIWTWSSWELLPA-LLFTVLIVPVMLVDNVLRPILMSRGLDVP 322

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
            L    G++GG    GL+GLF+GPV++++
Sbjct: 323 MLVILIGVLGGTLAYGLIGLFLGPVILSV 351


>gi|209515626|ref|ZP_03264490.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
 gi|209503862|gb|EEA03854.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
          Length = 370

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 82/163 (50%), Gaps = 12/163 (7%)

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
           YR    I+ ++        P    +I+ +    IR+   G+  IA  + L++G  + + G
Sbjct: 190 YRSAVQIASRISG------PEEGTQIADLCTATIRAVAQGVVGIAFIQMLLIGIGFIVMG 243

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV---DK 294
           +P    L +   ++ ++   A +    V I++++   +  AT +F   ++ +F+    D 
Sbjct: 244 IPGAGLLALAVLLLGIMQLPATLITIPVIIFVILTDGVSTATIIF---SVYIFVAGLADN 300

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
            L+P L+G  + +P      G +GG+ T G++GLF+GPV++A+
Sbjct: 301 VLKPLLLGRGVAVPMPVVLVGALGGMVTGGVIGLFVGPVVLAV 343


>gi|218888166|ref|YP_002437487.1| hypothetical protein DvMF_3082 [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218759120|gb|ACL10019.1| protein of unknown function UPF0118 [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 397

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 70/134 (52%), Gaps = 2/134 (1%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSI 267
           +V R+  +G  ++A+ +G++ G    + G+P  +  G +    +++P  G  + +   SI
Sbjct: 219 RVARAVLVGGLLVAVVQGVLGGLGMAIVGMPG-LFWGTVMGFASLVPVVGTGLVWGPASI 277

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           YLL+ G    A  L LW ++ +   D  LRP+ + G         F  ++GG++T G+ G
Sbjct: 278 YLLLMGQWKGAVFLVLWCSLVVAGADSFLRPYFMRGSSGASVFYIFLSILGGLKTFGMAG 337

Query: 328 LFIGPVLMALIAVI 341
           +  GP++++   V+
Sbjct: 338 IIYGPLILSFTMVM 351


>gi|57242122|ref|ZP_00370062.1| acid membrane antigen A Cj1363 [Campylobacter upsaliensis RM3195]
 gi|57017314|gb|EAL54095.1| acid membrane antigen A Cj1363 [Campylobacter upsaliensis RM3195]
          Length = 347

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 71/340 (20%), Positives = 139/340 (40%), Gaps = 34/340 (10%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           K F   +  A ++   +  +++ F+S  ++     + + T  ++ LF  P    F Y  +
Sbjct: 24  KSFLLVMAIAALMAVATSNLHAKFLSLTKQRKLLASTLTTSFMILLFFAP----FIYTSI 79

Query: 88  EMKELVSK--VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           E+ + +    + L  Q    +  +   +P  +   E   K       L  L         
Sbjct: 80  ELAKALKNFDINLITQTLDYIKHYEFSLPSSLEFLEPKIKEFIAGLDLNSLYR-----QA 134

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           + +   F        +D  L      I +F+F+ + +    +L    + + P    ++  
Sbjct: 135 LTYASSFTKSGAKFLMDMAL------ICVFYFFANLY--GTELVIYLKSIVPINKTELDE 186

Query: 206 I---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPIS 261
           I   V  V+      M I+AI +G + G   +  G    + +GVI A+ ++IP  G  + 
Sbjct: 187 ILGEVGNVMAVVLYSMIIVAIFQGALFGIIMFFYGYDG-LLMGVIFAVSSLIPAVGGALV 245

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPF--------LVGGPIKLPFLPT 312
           +  VS+Y    GN+ +A  +F++  I + FI D  ++P         LV  P  +  L  
Sbjct: 246 YVPVSLYTFASGNLGSAIVIFIYSFIMISFIADTLIKPLIIKWINEKLVKTPTNINELLI 305

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMA-LIAVIWKESIMAIKE 351
           F  ++ G+ + G  G+ +GP ++   I+ I   SI+  K 
Sbjct: 306 FLAMIAGISSFGFWGIILGPAILTFFISTIRFYSILKDKN 345


>gi|298374135|ref|ZP_06984093.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
 gi|298268503|gb|EFI10158.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
          Length = 337

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 90/179 (50%), Gaps = 8/179 (4%)

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV---IRSTFLGMT 219
           + ++++ +I  L+F    G  +   L +L    FP   +    ++ ++   ++S  +G+ 
Sbjct: 148 FAVNVVVLIFILYFMLIGGRKMENYLYTL----FPFSDQNKDEVLNEINMIVKSNAIGIP 203

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNA 278
           ++A+ +G+V    Y++   P  +  G +T I  +IP  G  + +  ++ Y+ + G+  +A
Sbjct: 204 LLAVIQGIVAVIGYFIFQTPDPLLFGFLTCIATIIPIVGTALVWVPLAAYMALNGDWVHA 263

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
             L ++  + +  VD  +R  L      +  L T FG+V G+   G +G+  GP+L++L
Sbjct: 264 LGLAIYALLVITNVDNLIRFILQKKLADIHPLITVFGVVIGLSLFGFMGIIFGPLLVSL 322


>gi|159906093|ref|YP_001549755.1| hypothetical protein MmarC6_1711 [Methanococcus maripaludis C6]
 gi|159887586|gb|ABX02523.1| protein of unknown function UPF0118 [Methanococcus maripaludis C6]
          Length = 336

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 113/252 (44%), Gaps = 32/252 (12%)

Query: 118 WASELWTKHLSHPQSLKILSE--TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM----- 170
           + S L  ++++      ILSE  TFLK      I + A +       Y L ++F+     
Sbjct: 100 FVSYLGLQNIAQEDLNPILSELWTFLKPT----INKMAEQI------YGLPLLFIKGMIT 149

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS---RIVPKVIRSTFLGMTIIAIGEGL 227
           +   ++F +DG       D++  H+   Y  +     R + +  ++ F+   + A   GL
Sbjct: 150 VFLTYYFLKDGHRFK---DAIMPHVPEVYHVQTELFIRKLHEAYKNLFVVNALTAFTVGL 206

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           +  + +W  G+P+ V LG ++ I+ ++P  GG  I +  +S+Y +  G    A  LF +G
Sbjct: 207 ISIAGFWAIGLPNPVTLGALSGILTLLPIVGGWTI-YMPLSLYYIAVGMYSKAILLFGFG 265

Query: 286 AIELFIV-DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            I L +  D  +RP LV     +         + G   +G+ G  +GP++M     I++ 
Sbjct: 266 VIFLSLAPDFVIRPRLVNQESDIHPAIALVAFLMGPLALGVTGFALGPLIMGTFDAIFR- 324

Query: 345 SIMAIKENKEKI 356
               +K  K+ I
Sbjct: 325 ----VKNGKDSI 332


>gi|167031767|ref|YP_001666998.1| hypothetical protein PputGB1_0752 [Pseudomonas putida GB-1]
 gi|166858255|gb|ABY96662.1| protein of unknown function UPF0118 [Pseudomonas putida GB-1]
          Length = 365

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 1/153 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           K ++ +    IR+   G+  IA  + L++G  + + GVP    L ++  ++ +    A +
Sbjct: 207 KPLATLCTATIRAVAQGVIGIAFIQMLLIGVGFVIKGVPGAGMLAIVILMLGIAQAPATL 266

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
               V IY+        A  +F        + D  L+P L+G  + +P      G +GG+
Sbjct: 267 VTVPVIIYVFNTDGFTVAAIVFAVYTFVAGLADNVLKPMLLGRGVDVPMPVVLIGALGGM 326

Query: 321 RTMGLLGLFIGPVLMALIAVI-WKESIMAIKEN 352
              G++GLFIGPV++ +  V+ W+   + + E 
Sbjct: 327 VVKGIIGLFIGPVILGVTYVLFWQWVALQVPEQ 359


>gi|302670428|ref|YP_003830388.1| hypothetical protein bpr_I1065 [Butyrivibrio proteoclasticus B316]
 gi|302394901|gb|ADL33806.1| hypothetical protein bpr_I1065 [Butyrivibrio proteoclasticus B316]
          Length = 382

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 154/351 (43%), Gaps = 29/351 (8%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISK-----KEESSTF-LAVIATVSVMCLFIVPLLF 80
           L G+  PV+S +I+ +   P+   F  K     K ES+ + L+V  T+ V+ L +V LLF
Sbjct: 42  LYGYIKPVVSGMIVAYIFNPLSKVFNDKVFRKMKNESAKWKLSVCCTIIVIVLAVV-LLF 100

Query: 81  LFYYGML--EMKELVSKV--VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
           +     L   +   VS V   +A   G+      +D  G +++ EL        + L  +
Sbjct: 101 VALIPQLADSISTFVSNVDGYVATTQGVLRDLEKNDTTG-LFSGELGALASFTDKILDKI 159

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR--DGFSISQQLDSLGE- 193
            E F  +N +  +   ++  G    D  ++ I  I  L    R  +GF+   +L    E 
Sbjct: 160 GEYF--SNNVGNVVTTSASIGKSVFDAVIAFILAIYLLLDKTRLKNGFARFTRLIMKPEN 217

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL----AGVPSHVALGVITA 249
           H   A +  + R    +IR  ++   I+   EG+++G+   +    AG+P  V + VI  
Sbjct: 218 HENVAIF--LDRCNSIIIR--YISFDIV---EGIIVGAVNLIFMLIAGMPYSVLISVIVG 270

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  + P   PI    +  ++L+  N + A     +  +   I    L+P L G  + +  
Sbjct: 271 VTNLAPTFGPIVGCVIGAFILVLVNPWYAVAFIAFTIVLQTIDGYILKPRLFGESLGVSP 330

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM-AIKENKEKISSN 359
           L     +V G R  G++G+ +     A+I  +W++ ++  ++E   K+  N
Sbjct: 331 LMILIAIVVGGRLFGVVGILLAIPFAAIIDFVWRDYVLKKLEERHAKVYHN 381


>gi|301058702|ref|ZP_07199703.1| putative ATP synthase F0, A subunit [delta proteobacterium NaphS2]
 gi|300447266|gb|EFK11030.1| putative ATP synthase F0, A subunit [delta proteobacterium NaphS2]
          Length = 370

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 128/295 (43%), Gaps = 15/295 (5%)

Query: 15  MIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +I+ ++ +S  FL   + F   +  A +      P+Y  F  +        ++   + ++
Sbjct: 11  LILLVLAISALFLSMIRDFLMALFLAALSSAMVHPLYKRFERRFGGRRGPASITTLLLMV 70

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L ++PL+ L    + +  ++   V    QH +  P  LS+    +     + +H++  +
Sbjct: 71  ILVLIPLVGLLGIVVGQAIKVGESVTPWIQHQVAQPGALSE----LLQKLPFYEHIAPYR 126

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            +       L      F     S F M  + +       +  +FFF  DG  + Q++   
Sbjct: 127 EVIFQKAGALVGTVSKFFINSLSSFTMGTVSFLFMFFLFLYTMFFFLMDGDKLLQKI--- 183

Query: 192 GEHLFPAYWKKISRIVPK---VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +  P   +   R++ +   V R+T  G  +I I +G + G A W+ G+PS V  G I 
Sbjct: 184 -LYYLPLEDQDEQRLLKRFTSVTRATLKGTAVIGIIQGGLAGLALWVVGIPSAVFWGAIM 242

Query: 249 AIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           A++++IPG G  + +  V I L+  G+      L L+  + +  +D  LRP LVG
Sbjct: 243 AVLSVIPGIGTGLVWGPVGIVLIAGGHYGKGIGLILFCGVVVGSIDNFLRPRLVG 297


>gi|134045790|ref|YP_001097276.1| hypothetical protein MmarC5_0751 [Methanococcus maripaludis C5]
 gi|132663415|gb|ABO35061.1| protein of unknown function UPF0118 [Methanococcus maripaludis C5]
          Length = 336

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 114/247 (46%), Gaps = 22/247 (8%)

Query: 118 WASELWTKHLSHPQSLKILSE--TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
           + + L  ++++     +ILSE  TFLK      I + A +   I L +   +I + +  +
Sbjct: 100 FVNYLGLQNIAQEDLNRILSELWTFLKPT----INKMAEQIYGIPLLFIKGLITVFLT-Y 154

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKIS---RIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
           +F +DG       D++  H+   Y  +     R + +  ++ F+   + +   GL+  + 
Sbjct: 155 YFLKDGHRFK---DAIMPHVPEVYHVQTELFIRKLNEAYKNLFVVNALTSFTVGLISIAG 211

Query: 233 YWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
           +W  G+P+ V LG ++ I+ ++P  GG  I +  +S+Y +  G    A  LF +G I L 
Sbjct: 212 FWAIGLPNPVTLGALSGILTLLPIVGGWTI-YMPLSLYYIAVGMYTKAILLFGFGVIFLS 270

Query: 291 IV-DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           +  D  +RP LV     +         + G   +G+ G  +GP++M     I++     +
Sbjct: 271 LAPDFAIRPRLVNHESDIHPAIALVAFLMGPLALGVTGFALGPLIMGTFDAIFR-----V 325

Query: 350 KENKEKI 356
           K  K+ I
Sbjct: 326 KNGKDSI 332


>gi|28901438|ref|NP_801093.1| hypothetical protein VPA1583 [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839443|ref|ZP_01992110.1| hipothetical membrane protein [Vibrio parahaemolyticus AQ3810]
 gi|260362991|ref|ZP_05775860.1| hipothetical membrane protein [Vibrio parahaemolyticus K5030]
 gi|260880278|ref|ZP_05892633.1| hipothetical membrane protein [Vibrio parahaemolyticus AN-5034]
 gi|260896661|ref|ZP_05905157.1| hipothetical membrane protein [Vibrio parahaemolyticus Peru-466]
 gi|28809985|dbj|BAC62926.1| putative membrane protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747032|gb|EDM58020.1| hipothetical membrane protein [Vibrio parahaemolyticus AQ3810]
 gi|308085424|gb|EFO35119.1| hipothetical membrane protein [Vibrio parahaemolyticus Peru-466]
 gi|308091913|gb|EFO41608.1| hipothetical membrane protein [Vibrio parahaemolyticus AN-5034]
 gi|308112310|gb|EFO49850.1| hipothetical membrane protein [Vibrio parahaemolyticus K5030]
          Length = 381

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 84/170 (49%), Gaps = 7/170 (4%)

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           F  Y +  S++  L ++         K  + ++   I+S  LG+  +A  + L++G+ ++
Sbjct: 184 FMTYSE--SLASGLQTIAIRTAGENAKSWTTLIAATIKSVLLGVVGVAAIQALLIGAGFF 241

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           + GVP+   L +I  I+ +    A ++   V  Y+ +  +   AT   +W A+   + + 
Sbjct: 242 VFGVPAAGLLTLILMILCIAQLPALLAVLPVIGYMYMTQDSTTATMFTVW-AVVGALSEN 300

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            L+P  +G  + +P      G +GG+   G++GLF+G V++A    IW E
Sbjct: 301 LLKPMFMGRGVDVPMPVILLGAIGGMLFYGIVGLFLGAVILA----IWYE 346


>gi|311106377|ref|YP_003979230.1| hypothetical protein AXYL_03195 [Achromobacter xylosoxidans A8]
 gi|310761066|gb|ADP16515.1| hypothetical protein AXYL_03195 [Achromobacter xylosoxidans A8]
          Length = 376

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 148/335 (44%), Gaps = 25/335 (7%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           SLY L+ F   ++ A  I   +WP+  + I +      ++  + T+ V+ LF++    L 
Sbjct: 28  SLYILRPFLPGLVWATTIVVATWPVMLA-IQRYCGGRRWIGTL-TMLVILLFVI---VLP 82

Query: 83  YYGMLEMKELVSKVVLANQHGIP------VPRWLSDIP--GGMWASELWTKHLSHPQSLK 134
            Y ++    L S  ++A    +P       P W+  IP  G   A E  T   +    L 
Sbjct: 83  LYEVISTLALHSGTIMAAVKSLPDYALLAPPAWVQGIPLVGPKIAHEWQTLSDAGAGGLL 142

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
              E +L T+ + ++   A+  G   +   ++++   I     Y  G      +      
Sbjct: 143 AKLEPYL-TSAVTWLLGHAAIVGAFMMHMLITVVVAGI----LYTKGEVAVDFVRRFFNR 197

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L         ++  + IR+  LG+ + A+ +  + G   W+AGVP   A G++TA+M M+
Sbjct: 198 LAGQRGLAAVKLAGQAIRAVALGIVVTAVVQSGLGGIGLWIAGVP---AAGILTALMVML 254

Query: 255 ---PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
                G  +      ++L        A  L +W A+ + ++D  LRP L+   + L  L 
Sbjct: 255 CLAQLGPFLPMLGGVVWLFQNDMKLAAAVLLVW-AVLVAMLDNLLRPLLIKRGVNLSLLL 313

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
              G++GG+   G++GLFIGPV++A+   + K  I
Sbjct: 314 ILVGVLGGLFAFGIVGLFIGPVILAVTHTLLKAWI 348


>gi|260899709|ref|ZP_05908104.1| hipothetical membrane protein [Vibrio parahaemolyticus AQ4037]
 gi|308106878|gb|EFO44418.1| hipothetical membrane protein [Vibrio parahaemolyticus AQ4037]
 gi|328469371|gb|EGF40317.1| hypothetical protein VP10329_10821 [Vibrio parahaemolyticus 10329]
          Length = 381

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 84/170 (49%), Gaps = 7/170 (4%)

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           F  Y +  S++  L ++         K  + ++   I+S  LG+  +A  + L++G+ ++
Sbjct: 184 FMTYSE--SLASGLQTIAIRTAGENAKSWTTLIAATIKSVLLGVVGVAAIQALLIGAGFF 241

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           + GVP+   L +I  I+ +    A ++   V  Y+ +  +   AT   +W A+   + + 
Sbjct: 242 VFGVPAAGLLTLILMILCIAQLPALLAVLPVIGYMYMTQDSTTATMFTVW-AVVGALSEN 300

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            L+P  +G  + +P      G +GG+   G++GLF+G V++A    IW E
Sbjct: 301 LLKPMFMGRGVDVPMPVILLGAIGGMLFYGIVGLFLGAVILA----IWYE 346


>gi|60681100|ref|YP_211244.1| putative transmembrane protein [Bacteroides fragilis NCTC 9343]
 gi|253563134|ref|ZP_04840591.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265762981|ref|ZP_06091549.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|60492534|emb|CAH07305.1| putative transmembrane protein [Bacteroides fragilis NCTC 9343]
 gi|251946910|gb|EES87192.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263255589|gb|EEZ26935.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|301162588|emb|CBW22135.1| putative transmembrane protein [Bacteroides fragilis 638R]
          Length = 332

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 90/197 (45%), Gaps = 6/197 (3%)

Query: 141 LKTNGIDFIPRFASRFGMIFL----DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           L ++ + FI     + G   +     + +++  ++  L+F    G  +   +D +     
Sbjct: 115 LGSDTLSFIVSLLPKIGQAVMGGISSFAVNLFVLVFVLYFMLIGGTKMEAYIDDI-LPFN 173

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               ++++  +  ++RS  +G+ ++A+ +G V    Y++ G P+   +GV+T    +IP 
Sbjct: 174 EKNTREVTHEINMIVRSNAIGIPLLAVIQGGVALIGYFIFGAPNAWLIGVLTCFATIIPM 233

Query: 257 -GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G  + +  V+ YL + G   NA  L  +G I +   D  +R  L         L T FG
Sbjct: 234 VGTALVWFPVAAYLALTGEWANAIGLAAYGGIVVSQCDNLIRFILQKKMADTHPLITIFG 293

Query: 316 LVGGVRTMGLLGLFIGP 332
           +V G+   G +G+  GP
Sbjct: 294 VVIGLSLFGFMGVIFGP 310


>gi|254173525|ref|ZP_04880197.1| membrane protein [Thermococcus sp. AM4]
 gi|214032217|gb|EEB73047.1| membrane protein [Thermococcus sp. AM4]
          Length = 335

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 4/97 (4%)

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
           A ++YL ++G++  A  + ++GA+ +  + D T+RP LV    +L     F G++GG   
Sbjct: 242 AGAVYLYMRGSLLGAIGISVYGAVLVSPLPDYTIRPMLVAKDAELDETLVFIGMLGGTWA 301

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            GL GL +GPV++++  V+ KE     K N E  +++
Sbjct: 302 FGLKGLLLGPVILSIALVLLKE---WKKRNSEGGAAD 335


>gi|53712882|ref|YP_098874.1| hypothetical protein BF1591 [Bacteroides fragilis YCH46]
 gi|52215747|dbj|BAD48340.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
          Length = 332

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 81/171 (47%), Gaps = 2/171 (1%)

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
           + +++  ++  L+F    G  +   +D +         ++++  +  ++RS  +G+ ++A
Sbjct: 141 FAVNLFVLVFVLYFMLIGGTKMEAYIDDI-LPFNEKNTREVTHEINMIVRSNAIGIPLLA 199

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCL 281
           + +G V    Y++ G P+   +GV+T    +IP  G  + +  V+ YL + G   NA  L
Sbjct: 200 VIQGGVALIGYFIFGAPNAWLIGVLTCFATIIPMVGTALVWFPVAAYLALTGEWANAIGL 259

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
             +G I +   D  +R  L         L T FG+V G+   G +G+  GP
Sbjct: 260 AAYGGIVVSQCDNLIRFILQKKMADTHPLITIFGVVIGLSLFGFMGVIFGP 310


>gi|284165585|ref|YP_003403864.1| hypothetical protein Htur_2311 [Haloterrigena turkmenica DSM 5511]
 gi|284015240|gb|ADB61191.1| protein of unknown function UPF0118 [Haloterrigena turkmenica DSM
           5511]
          Length = 393

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 72/130 (55%), Gaps = 6/130 (4%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
            +++++ +   ++A  + ++LG    + G+P+ V L V+T ++ ++P  GA   +  VSI
Sbjct: 199 HLMQASVISNVLVAAIQAVMLGVGLAVLGIPAVVLLTVLTFVLTLLPLVGAFGVWLPVSI 258

Query: 268 YLLIKGNIFNATCLFLWGAIELFIV--DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           YL+  G    A  L ++G   LF+   D  LRP L+G    +       G+ GG+ T G 
Sbjct: 259 YLVAIGRPVAAAALAVYG---LFVTVSDTYLRPALIGRTSAINSAIIVVGIFGGLITFGA 315

Query: 326 LGLFIGPVLM 335
           +GLF+GPV++
Sbjct: 316 VGLFVGPVVL 325


>gi|296127433|ref|YP_003634685.1| hypothetical protein Bmur_2416 [Brachyspira murdochii DSM 12563]
 gi|296019249|gb|ADG72486.1| protein of unknown function UPF0118 [Brachyspira murdochii DSM
           12563]
          Length = 378

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 14/185 (7%)

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKV---IRSTFLGMTIIAIGEGLVLGSAYWLA 236
           DG  + +Q+ +L     P   K   R++ +V   I+    G     + +G+     Y + 
Sbjct: 187 DGEYLMEQVRTL----VPIERKYFDRLIKQVSEGIKGIVFGNLFTGLFQGVCAFIVYSVF 242

Query: 237 GVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
           GV +      +T I + +P  G  I +  + +  +I G +  A    +     + I D  
Sbjct: 243 GVANSFTFAFLTIIASFMPIIGTTIIWLPLGVLFIINGQLIKAIIFVICSWFFITIPDNF 302

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK----ESIMAIKE 351
           +RP L+G  I+L  L  FF ++GGV   GL G+ +GP+   L   I K    E I+  K 
Sbjct: 303 VRPLLLGNRIELHPLFIFFAILGGVLFFGLSGIILGPLTFILFFEIMKIFNEERILEAK- 361

Query: 352 NKEKI 356
            KEKI
Sbjct: 362 -KEKI 365


>gi|116747741|ref|YP_844428.1| hypothetical protein Sfum_0292 [Syntrophobacter fumaroxidans MPOB]
 gi|116696805|gb|ABK15993.1| protein of unknown function UPF0118 [Syntrophobacter fumaroxidans
           MPOB]
          Length = 391

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 86/196 (43%), Gaps = 16/196 (8%)

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGS 231
           F+  RDG   +  LD+      P    +  R+   +  V RS  +G  + A+ +GL+ G 
Sbjct: 186 FYLVRDG---AAMLDA-ARGFSPLRKDQEDRLLGGIRVVARSVLMGAFMTALCQGLIGGI 241

Query: 232 AYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
              L G+P  +  G +    + IP  G  + +  ++ YL++ G   +A  L +W  + + 
Sbjct: 242 GVALIGLPG-LFWGTVMGFASFIPIVGTALVWVPMAAYLVLLGTWKSALFLAIWCIVLVG 300

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP-------VLMALIAVIWK 343
            +D  +RP+L+ G   L     F  ++G V+  GL G+  GP       +++ L    ++
Sbjct: 301 SIDNFVRPYLMRGQSNLSPFYIFLSIIGAVQYFGLTGILYGPLIVSFAMIMLYLYGAEYR 360

Query: 344 ESIMAIKENKEKISSN 359
           E +   K     +   
Sbjct: 361 EDLAESKSGTHAVEEK 376


>gi|163801373|ref|ZP_02195272.1| nicotinate phosphoribosyltransferase [Vibrio sp. AND4]
 gi|159174862|gb|EDP59662.1| nicotinate phosphoribosyltransferase [Vibrio sp. AND4]
          Length = 386

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 83/170 (48%), Gaps = 7/170 (4%)

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           F  Y +  S++  L ++         K  + ++   I+S  LG+  +A  + L++G+ ++
Sbjct: 184 FMTYSE--SLASGLSTIAVRTAGDNAKSWTTLIAATIKSVLLGVVGVAAIQALLIGAGFF 241

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           + GVP+   L ++  I+ +    A ++   V  Y+ +  +   AT   +W  +   + + 
Sbjct: 242 IFGVPAAGLLTLVLMILCIAQLPALLAVLPVIGYMYMTKDTSTATMFTVW-VVVAALSEN 300

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             +P L+G  + +P      G +GG+   G++GLF+G V++A    IW E
Sbjct: 301 LFKPMLMGRGVSVPMPVILLGAIGGMLFYGIVGLFLGAVILA----IWYE 346


>gi|42525852|ref|NP_970950.1| hypothetical protein TDE0336 [Treponema denticola ATCC 35405]
 gi|41815902|gb|AAS10831.1| membrane protein, putative [Treponema denticola ATCC 35405]
          Length = 372

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 23/184 (12%)

Query: 190 SLGEHLFPAYWKKISRIVPKVIRST---FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           SL +H  P   +   ++  K+   T   F G+ +++  + L     Y + GV S + L +
Sbjct: 195 SLLKHAIPIDNETSDKLFSKIGEITTNLFKGLFLVSFYQCLASFIVYLIFGVQSALLLAI 254

Query: 247 ITAIMAMIP----------GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           +T     +P           G  + FT      L+KG IF    L + G+I  F+ D  L
Sbjct: 255 LTFFSTFLPIVGCGLIWFPVGVGLCFTDG----LVKGLIF----LVVAGSIISFM-DNFL 305

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           RPF +   IK+  L  FF ++GGV      G+ +GP+++ L   I   + + I+E KE  
Sbjct: 306 RPFFLKDRIKIHPLLIFFSMLGGVSMFSFDGIILGPMIVILFFTILDMA-LDIEEKKEND 364

Query: 357 SSNF 360
             NF
Sbjct: 365 EDNF 368


>gi|284165881|ref|YP_003404160.1| hypothetical protein Htur_2610 [Haloterrigena turkmenica DSM 5511]
 gi|284015536|gb|ADB61487.1| protein of unknown function UPF0118 [Haloterrigena turkmenica DSM
           5511]
          Length = 370

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 8/181 (4%)

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDS---LGEHLFPAYWKKISRIVPKVIRSTFLG 217
           L+  + +   +  L++   DG  +   L     L  H+    + ++  +   VI S  L 
Sbjct: 148 LELAIGLAVCVFLLYYLLVDGDDLVAWLGDVAPLEPHVRDELFGEVRVVTWAVIHSHVL- 206

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIF 276
              +A+ +GL+ G    + G+P+     VI  +++ +P  G  + +   + YL   G+  
Sbjct: 207 ---VAVVQGLLGGIGLAVVGIPNAAFWTVIMILLSFLPAIGVWLVWGPAAGYLATAGDPL 263

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            A  L  +G   L +VD  LR   V     L       G++GG+  +G++GLF+GPVL+A
Sbjct: 264 AAVALLAYGLTILGLVDNYLRAIFVDRGSGLHPAAVIVGVIGGIYLLGVMGLFLGPVLLA 323

Query: 337 L 337
           +
Sbjct: 324 V 324


>gi|45358507|ref|NP_988064.1| hypothetical protein MMP0944 [Methanococcus maripaludis S2]
 gi|44921265|emb|CAF30500.1| hypothetical protein MMP0944 [Methanococcus maripaludis S2]
          Length = 336

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 88/188 (46%), Gaps = 15/188 (7%)

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKIS---RIVPKVIRSTFLGMTIIAIGEGLVLGS 231
           ++F +DG+      D++  H+   Y  +     R + +  ++ F+   + A   GL+  +
Sbjct: 154 YYFLKDGYRFK---DAVMPHVPEVYHVQTELFIRKLHEAYKNLFVVNALTAFTVGLISIA 210

Query: 232 AYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
            +W  G+P+ V LG ++ I+ ++P  GG  I +  +S+Y +  G    A  LF +G + L
Sbjct: 211 GFWAIGLPNPVTLGALSGILTLLPIVGGWTI-YMPLSVYYIAVGMYSKAILLFGFGVLFL 269

Query: 290 FIV-DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            +  D  +RP LV     +         + G   +G+ G  +GP++M     I++     
Sbjct: 270 SLAPDFVIRPRLVNHESSIHPAFALVAFLMGPLALGITGFALGPLIMGTFDAIFR----- 324

Query: 349 IKENKEKI 356
           +K  K+ I
Sbjct: 325 VKNGKDSI 332


>gi|329295579|ref|ZP_08252915.1| hypothetical protein Pstas_00795 [Plautia stali symbiont]
          Length = 123

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 3/109 (2%)

Query: 249 AIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A +++IP  G+ I +   +I+    G ++    L  +  I + +VD  LRP LVG   K+
Sbjct: 2   AFLSLIPAVGSAIVWVPAAIFFFATGALWKGLFLVGFFVIVVGLVDNILRPLLVGKDTKM 61

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           P        +GG+   G+ G  IGP++ AL    W  ++++ ++N+E +
Sbjct: 62  PDYLILIATLGGMEVYGINGFVIGPLIAALFIACW--NLLSGRDNRENV 108


>gi|257457925|ref|ZP_05623084.1| putative membrane protein [Treponema vincentii ATCC 35580]
 gi|257444638|gb|EEV19722.1| putative membrane protein [Treponema vincentii ATCC 35580]
          Length = 362

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 93/201 (46%), Gaps = 18/201 (8%)

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP---AYWKKI 203
           D I R+A+       ++ LS++FM  AL+F + DG    Q L S+     P   +  +K+
Sbjct: 154 DTIIRYATGIAKNIGNFVLSLLFMCFALYFLFIDG----QYLGSVFVTAIPIQVSEGQKL 209

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGA--- 258
           +  +   I + F+G  +++I +       Y +  V   + L  +T   + +P  G A   
Sbjct: 210 AAKIKDTITNLFMGYFLVSICQFAAAFIVYTIFRVEGALLLSFLTFFSSFLPFFGCALVW 269

Query: 259 -PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P+    +    L+KG +F     F   +I     D  LRP  +   I++  L  FF ++
Sbjct: 270 LPLGVEILLTAGLLKGILFLCVAGFFISSI-----DNFLRPMFLQNRIQIHPLLIFFSIL 324

Query: 318 GGVRTMGLLGLFIGPVLMALI 338
           GG+R   L G+ +GP+ + L+
Sbjct: 325 GGIRFFKLNGIVLGPMFVILL 345


>gi|167624368|ref|YP_001674662.1| hypothetical protein Shal_2445 [Shewanella halifaxensis HAW-EB4]
 gi|167354390|gb|ABZ77003.1| protein of unknown function UPF0118 [Shewanella halifaxensis
           HAW-EB4]
          Length = 383

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 82/364 (22%), Positives = 153/364 (42%), Gaps = 34/364 (9%)

Query: 9   QGIMRWMIMFIILV-SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +  +R  ++FI++V +   +K F  PVL   II     PI        +      A I  
Sbjct: 19  ESAIRIGLLFILIVWTFDIIKPFVIPVLWGAIIAVALMPITQKLERALKGRRGLAASILA 78

Query: 68  VSVMCLFIVPLLFL---FYYGMLEMKELVSKVVLANQHGIPVP-RWLSDIPG-GMWASEL 122
           ++ + L I P   +    + G+  M E    V+ +    IP P + ++DIP  G    ++
Sbjct: 79  LAGIILLIAPFWIVSSSIFDGVTHMIE----VLQSGDVDIPGPTQKVADIPLIGDKLYDI 134

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRF-------ASRFGMIFLDYCLSIIFMIIALF 175
           W            L  T L+   + F+P+        A   G       + II + IA  
Sbjct: 135 WA-----------LFATNLEKAVLHFLPQIKTGVTAAAGMLGSSLGSLVMFIISLAIAGG 183

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F      S +  + ++   +   + ++ + +    IRS  LG+  +A  + +++GSA + 
Sbjct: 184 FMAHAEKS-AAAVSTVAVRVAGKHGEEWTSLTAATIRSVLLGVVGVAFIQSILIGSALFT 242

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
             +P+      I  I+ +      +    +  Y+    +   AT   +W  I   I D  
Sbjct: 243 FSIPAAGIFTFIVFILGIAQLPPLLVVLPLIFYVFSTHDSTPATIFTVWVLIA-GISDSF 301

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L+P L+G  + +P      G +GG+ T G++GLF+G V++A    IW E  +   + +E+
Sbjct: 302 LKPMLMGRGVDVPMPVILIGAIGGMITAGIIGLFLGAVILA----IWYELFITWLKTEEE 357

Query: 356 ISSN 359
            ++ 
Sbjct: 358 ATTG 361


>gi|303246923|ref|ZP_07333199.1| protein of unknown function UPF0118 [Desulfovibrio fructosovorans
           JJ]
 gi|302491630|gb|EFL51513.1| protein of unknown function UPF0118 [Desulfovibrio fructosovorans
           JJ]
          Length = 362

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 117/262 (44%), Gaps = 26/262 (9%)

Query: 102 HGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL 161
           H +P+P W     G +  S +  + +          ET   ++G D    F S  G    
Sbjct: 119 HALPLPNWAK---GYLDVSSIDLRKI----------ETLALSSGGDIGLWFLSA-GKGVA 164

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK---VIRSTFLGM 218
              L ++ +++ LF+   +G    ++L  L     P    +   I+ +   V ++  LG 
Sbjct: 165 SMGLQLLVLVMFLFYLLAEG----ERLTELLRKASPLRRDQEDAIIARFKAVSQAVLLGG 220

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIF 276
              ++  G+V G   W+AG+ S +  G +  I ++IP  G + I   A+ I L+  G++ 
Sbjct: 221 LGTSVAIGVVTGIGLWIAGI-SPLLWGAVAVIASLIPVVGLSLIMLPAI-ISLIATGSVK 278

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            A  L L+  + +  VD  +RP  + G  ++  +  F  ++GGV   G LGL  GP+ ++
Sbjct: 279 MAIFLALYWLLVVSSVDNVVRPLFMRGTARMSLVWVFVSIIGGVLMFGPLGLLYGPLALS 338

Query: 337 LIAVIWKESIMAIKENKEKISS 358
            I+ ++ E     +   +  SS
Sbjct: 339 -ISFLFLEIFFDAQNEADDTSS 359


>gi|218514462|ref|ZP_03511302.1| putative permease protein [Rhizobium etli 8C-3]
          Length = 62

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/33 (69%), Positives = 26/33 (78%)

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           GGV+TMG LGLFIGPVLMALI  IW+E I   +
Sbjct: 1   GGVKTMGFLGLFIGPVLMALIVAIWREWIHEAR 33


>gi|315638162|ref|ZP_07893344.1| acid membrane antigen A family protein [Campylobacter upsaliensis
           JV21]
 gi|315481698|gb|EFU72320.1| acid membrane antigen A family protein [Campylobacter upsaliensis
           JV21]
          Length = 347

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 64/324 (19%), Positives = 131/324 (40%), Gaps = 33/324 (10%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           K F   +  A ++   +  +++ F+S  ++     + + T  ++ LF  P    F Y  +
Sbjct: 24  KSFLLVMAIAALMAVATSNLHAKFLSLTKQRKLLASTLTTSFMILLFFAP----FIYTSI 79

Query: 88  EMKELVSK--VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           E+ + +    + L  Q    +  +   +P  +   E   K       L  L         
Sbjct: 80  ELAKALKNFDINLITQTLDYIKHYEFSLPSSLEFLEPKIKEFIAELDLNSLYR-----QA 134

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           + +   F        +D  L      I +F+F+ + +    +L    + + P    ++  
Sbjct: 135 LTYASSFTKSGAKFLMDMAL------ICVFYFFANLY--GTELVIYLKSIVPINKTELDE 186

Query: 206 I---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPIS 261
           I   V  V+      M I+AI +G + G   +  G    + +GVI A+ ++IP  G  + 
Sbjct: 187 ILGEVGNVMAVVLYSMIIVAIFQGALFGIIMFFYGYDG-LLMGVIFAVSSLIPAVGGALV 245

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPF--------LVGGPIKLPFLPT 312
           +  VS+Y    GN+ +A  + ++  I + F+ D  ++P         LV  P  +  L  
Sbjct: 246 YVPVSLYTFASGNLSSAIVILIYSFIMISFVADTLIKPLIIKWINEKLVKTPTNINELLI 305

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMA 336
           F  ++ G+ + G  G+ +GP ++ 
Sbjct: 306 FLAMIAGISSFGFWGIILGPAILT 329


>gi|262044145|ref|ZP_06017219.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038517|gb|EEW39714.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 137

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           ++GVP    L V+     ++  G  +      I+L   G+    T L +W  + +  +D 
Sbjct: 2   VSGVPYAALLTVVMIFTCLVQLGPLLVLVPSIIWLYWSGDTTWGTVLLVWSCV-VGTMDN 60

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
            +RP L+     LP +    G++GG+   G++GLFIGPVL+A+
Sbjct: 61  VIRPVLIRMGADLPMILILTGVIGGLIAFGMIGLFIGPVLLAV 103


>gi|86133547|ref|ZP_01052129.1| protein of unknown function DUF20 [Polaribacter sp. MED152]
 gi|85820410|gb|EAQ41557.1| protein of unknown function DUF20 [Polaribacter sp. MED152]
          Length = 343

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 86/173 (49%), Gaps = 8/173 (4%)

Query: 189 DSLGEHLFPAYWKKISRIVPK---VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           DSL E++ P   K +  I  +   ++RS  +G+ ++AI +G++    + + G+       
Sbjct: 170 DSLYEYI-PISNKNLKIIGAESQAMVRSNAIGIPLVAIAQGIIALIGFLIFGIRDPFFWF 228

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           +I  I +MIP  G  I    V I  +  GN   A  + ++G + +   D  +R FL+   
Sbjct: 229 IIVTIGSMIPFVGTLIGILPVFILSMSYGNTVGAWGILIYGLVVVGSTDNIIRLFLLKKL 288

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV---IWKESIMAIKENKE 354
             +  L T  G++ GV   G +GL  GP+L++L  V   I+K+   A+ E K+
Sbjct: 289 DNVHPLITLIGVIVGVPLFGFIGLIFGPLLISLFLVVVRIYKKEFGALIEEKK 341


>gi|330508908|ref|YP_004385336.1| hypothetical protein MCON_3236 [Methanosaeta concilii GP-6]
 gi|328929716|gb|AEB69518.1| protein of unknown function (DUF20) [Methanosaeta concilii GP-6]
          Length = 408

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 2/129 (1%)

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLW 284
           GL+    + L GV      G+ TAI A++P  G PI F  + IY L+ GN  +   LF++
Sbjct: 238 GLLAAIGFALFGVSYPFLWGLTTAIFALLPMIGPPIIFVPICIYFLLIGNYLSGIGLFIY 297

Query: 285 GAIELFIV-DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             I +  + +  +RP L     K+    T       +  +G LG  IGP+L   +   ++
Sbjct: 298 SLIFINTIPENVIRPKLASQGAKIHPSITLLAFAAPIFVVGFLGFIIGPLLYGFLLAAFR 357

Query: 344 ESIMAIKEN 352
             +  +KE 
Sbjct: 358 TRVYMLKEE 366


>gi|315443121|ref|YP_004076000.1| permease [Mycobacterium sp. Spyr1]
 gi|315261424|gb|ADT98165.1| predicted permease [Mycobacterium sp. Spyr1]
          Length = 391

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 81/170 (47%), Gaps = 12/170 (7%)

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + L+ LG+ +   Y  KI  +V   ++  F    IIA  +G+    + ++AG+ +   + 
Sbjct: 189 RDLNPLGDKVSDIYLAKIGAMVSATVKGQF----IIAACQGVAGAISVYIAGIHNGFFMF 244

Query: 246 VI-TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           VI   +++ IP G+ I    + I + I GN      + ++  I    +D  LRPFLV   
Sbjct: 245 VIFLTVLSFIPLGSGIVVIPLGIGMAIFGNPVGGIFVVVFHIIATTNIDNLLRPFLVPRS 304

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA-------VIWKESIM 347
             L        +  G++  G +G+ +GPVLM +I        V+++++ M
Sbjct: 305 AHLHPALMLLAVFAGLQMFGFIGIVLGPVLMIVIVTTISVYRVVYRDAPM 354


>gi|242398490|ref|YP_002993914.1| hypothetical protein TSIB_0499 [Thermococcus sibiricus MM 739]
 gi|242264883|gb|ACS89565.1| hypothetical protein TSIB_0499 [Thermococcus sibiricus MM 739]
          Length = 329

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 98/216 (45%), Gaps = 27/216 (12%)

Query: 151 RFASRFGMIFLDYCLSI-------IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           R + +     L Y LSI       I  I+  +       S+S +L SL     P   + +
Sbjct: 116 RVSEKLSEYLLSYTLSIPKLLLQAIIFIVVFYGILIHSHSLSAELYSL----LPEERRDL 171

Query: 204 SRIVPKVIRSTFLGMT----IIAIGEGLVLGSAYWL---AGVPSHVALGVITAIMAMIPG 256
              + +  R T   +     ++++ +G++L   +++   A +   +A G++  ++ ++P 
Sbjct: 172 GIELIEKARDTLNAILRTWLMLSVSKGIILTLGFYVFRVADLSGSIAAGIVCVVLELLPV 231

Query: 257 -GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV---DKTLRPFLVGGPIKLPFLPT 312
            G  + +   +IYLL +G IF      ++GA  L I    D T+RP LV    K+     
Sbjct: 232 IGGWLVWLVGAIYLLTQGQIFAGIMFAIYGA--LLISPGPDITIRPKLVAEGAKMNSALA 289

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVI---WKES 345
             G+ GG+   G+ G+ IGPV + L+  +   WKE 
Sbjct: 290 LIGIFGGIMAFGIKGIVIGPVALGLLLTLLEEWKEQ 325


>gi|315928095|gb|EFV07414.1| outer membrane domain protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 153

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 11/129 (8%)

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIF 276
           M I+AI +G + G      G    + +GVI A+ ++IP  G  + +  VS+Y     N+ 
Sbjct: 8   MVIVAIFQGALFGLITIFYGY-DGILMGVIFAVSSLIPAIGGALIYMPVSLYEFASNNLN 66

Query: 277 NATCLFLWGAIEL-FIVDKTLRPF--------LVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +A  +F++  I + FI D  ++P         LV  P K+  L  F  ++ G+ T G  G
Sbjct: 67  SALVIFIYSVIVISFIADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFGFWG 126

Query: 328 LFIGPVLMA 336
           + +GP ++ 
Sbjct: 127 IILGPAILT 135


>gi|325287380|ref|YP_004263170.1| hypothetical protein Celly_2482 [Cellulophaga lytica DSM 7489]
 gi|324322834|gb|ADY30299.1| protein of unknown function UPF0118 [Cellulophaga lytica DSM 7489]
          Length = 339

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 1/133 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAP 259
           K I + +   +++  LG+ ++A+G+GLV    +++ G+        +  I +MIP  G+ 
Sbjct: 183 KTIGKEITANVKANALGIPLVALGQGLVALLGFYIFGIEDPFFWAAVVTIGSMIPFVGSA 242

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           +    V I  L  GN F A  + ++G + +   D   R +++     +  L T  G++ G
Sbjct: 243 LGTVPVFILALSNGNTFQAWGILIYGLVAIGATDNIFRLYILKRLDDVHPLITLVGVLVG 302

Query: 320 VRTMGLLGLFIGP 332
           V   G +GL  GP
Sbjct: 303 VPLFGFIGLIFGP 315


>gi|108801082|ref|YP_641279.1| hypothetical protein Mmcs_4118 [Mycobacterium sp. MCS]
 gi|119870223|ref|YP_940175.1| hypothetical protein Mkms_4193 [Mycobacterium sp. KMS]
 gi|108771501|gb|ABG10223.1| protein of unknown function UPF0118 [Mycobacterium sp. MCS]
 gi|119696312|gb|ABL93385.1| protein of unknown function UPF0118 [Mycobacterium sp. KMS]
          Length = 400

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 68/332 (20%), Positives = 145/332 (43%), Gaps = 37/332 (11%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           YFL+GFF  ++ A +  +   P+Y     ++   +   A +  ++ +   I+P   + + 
Sbjct: 34  YFLRGFFILIVVAAVGAYLFTPLYERL--RRRFGTGLSATLTLLAAVLTVIIPATLVVFL 91

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWL--SDIP-----GGMWASELWTK------HLSHPQ 131
            ++++ ++V+ V   NQ       W+  +D+         +A++L  K       L+ P 
Sbjct: 92  AIVQITQMVTTV---NQ-------WMATTDVSTLGDRAMKFANDLIEKVPFLDFRLT-PD 140

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL-FFFYRDGF-SISQQLD 189
           +L+    T  +  G   +       G +      ++IF+ + +     RD   ++ ++L+
Sbjct: 141 TLRDGVVTVSQRVGEWLLGVLQGAVGGVLGALAATVIFLYVFISLLVNRDKIRTLIRRLN 200

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL---GV 246
            LGE +   Y  K   +V   ++  F    +IA+ +G+    + ++AG   H       +
Sbjct: 201 PLGEDITDLYLAKTGAMVKGTVKGQF----VIALCQGVAGAISIYVAGF--HEGFFFFAI 254

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           + + +++IP G+ I      I + + GN+     +  +  + +  +D  LRP LV    +
Sbjct: 255 VLSALSVIPLGSGILSIPFGIGMALFGNVIGGVFVVAFHLLVVTNIDNVLRPMLVPKAAR 314

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           L        +  G+   G  G+ +GPVLM +I
Sbjct: 315 LDPALMLLAVFSGIAMFGFWGIVLGPVLMIII 346


>gi|319953361|ref|YP_004164628.1| hypothetical protein Celal_1829 [Cellulophaga algicola DSM 14237]
 gi|319422021|gb|ADV49130.1| protein of unknown function UPF0118 [Cellulophaga algicola DSM
           14237]
          Length = 342

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 4/160 (2%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           K I + V  ++RS  LG+ ++A  +G+V    + +  +       VI  + +MIP  G  
Sbjct: 183 KIIGKDVQAMVRSNALGIPLVAFAQGIVALIGFLIFNIEQPFFWAVIVFVGSMIPFIGTF 242

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           I    V I  L  GN F A  + ++G + +   D  LR  ++     +  L T  G++ G
Sbjct: 243 IGTLPVFILTLASGNDFQAWGILIYGLVVIGSTDNLLRLVILKRIDNVHPLITLIGVIVG 302

Query: 320 VRTMGLLGLFIGPVLMALIAV---IWKESIMAIKENKEKI 356
           V   G +GL  GP+L++L  +   I+K+       N+E++
Sbjct: 303 VPLFGFIGLIFGPLLISLFLIVLRIYKDEYGQEVHNQEQL 342


>gi|291513866|emb|CBK63076.1| Predicted permease [Alistipes shahii WAL 8301]
          Length = 350

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 70/138 (50%), Gaps = 1/138 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAP 259
           + + R +  ++RS  + + ++A+ +G+V    Y   GVP  +  GV+T    ++P  G  
Sbjct: 183 RSVMREIHMIVRSNAIVIPLLAVSQGVVAYVGYLAFGVPEPLFWGVLTCFATILPIVGTA 242

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +  ++ Y+ + GN      L ++G + +  VD  +R  +      +  L T FG+  G
Sbjct: 243 LVWLPLAAYMSLDGNWGQGVGLVMYGTLVVTQVDNLVRMVMQKKMADVHPLITIFGVFIG 302

Query: 320 VRTMGLLGLFIGPVLMAL 337
           +   G +G+  GP+++A+
Sbjct: 303 LSLFGFMGVIFGPLMLAM 320


>gi|212635770|ref|YP_002312295.1| hypothetical protein swp_2989 [Shewanella piezotolerans WP3]
 gi|212557254|gb|ACJ29708.1| Membrane protein, putative [Shewanella piezotolerans WP3]
          Length = 386

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 79/366 (21%), Positives = 155/366 (42%), Gaps = 33/366 (9%)

Query: 9   QGIMRWMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +  +R  ++FI++V  Y  +K F  PVL   II     P+        +      A I  
Sbjct: 19  ESAIRIGLLFILIVWTYDIIKPFVIPVLWGAIIAVALMPLTQKLERALKGRRGLAATILA 78

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG---IPVP-RWLSDIPG-GMWASEL 122
           +  + L I P + +       + + VS  +   Q G   IP P + ++DIP  G    + 
Sbjct: 79  LGSIILLITPFILVSS----SIFDGVSHTIAVLQSGEIRIPGPTQKIADIPLIGDKLFDA 134

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGM---IFLDYCLSIIFMIIALFF--- 176
           W            L  T L+   I F+P+  S  G    +      +++  I++L     
Sbjct: 135 WA-----------LFSTNLEKAVIHFLPQIKSAVGTMAGVLGSGVGTLVMFIVSLAIAGG 183

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
           F       +  + ++   +   + ++ + +    IRS  LG+  +A  + +++GSA +  
Sbjct: 184 FMAHAEKSAAAVSTVAVKVVGKHGEEWTTLTAATIRSVLLGVVGVAFIQAILIGSALFTF 243

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
            +P+      I  I+ +      +    +  ++    +   AT   +W  I   + D  L
Sbjct: 244 SIPAAGLFTFIVFILGIAQLPPLLVVLPLIFFVFSTHDSTPATIFTVW-VIIAGVSDSFL 302

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL---IAVIWKESIMAIKENK 353
           +P L+G  + +P      G +GG+ T G++GLF+G V++A+   + + W +S      +K
Sbjct: 303 KPMLMGRGVDVPMPVILIGAIGGMITAGIIGLFLGAVVLAIWYELFITWLKS--EDGRDK 360

Query: 354 EKISSN 359
           + +SS+
Sbjct: 361 DALSSD 366


>gi|169632703|ref|YP_001706439.1| PerM family permease [Acinetobacter baumannii SDF]
 gi|169795048|ref|YP_001712841.1| PerM family permease [Acinetobacter baumannii AYE]
 gi|184159168|ref|YP_001847507.1| permease [Acinetobacter baumannii ACICU]
 gi|213158290|ref|YP_002320341.1| permease [Acinetobacter baumannii AB0057]
 gi|215482597|ref|YP_002324789.1| hypothetical protein ABBFA_000876 [Acinetobacter baumannii
           AB307-0294]
 gi|239501015|ref|ZP_04660325.1| hypothetical protein AbauAB_01772 [Acinetobacter baumannii AB900]
 gi|260556531|ref|ZP_05828749.1| permease [Acinetobacter baumannii ATCC 19606]
 gi|294836605|ref|ZP_06781288.1| hypothetical protein A60131_01655 [Acinetobacter sp. 6013113]
 gi|294840701|ref|ZP_06785384.1| hypothetical protein A6014_02507 [Acinetobacter sp. 6014059]
 gi|294860824|ref|ZP_06798593.1| hypothetical protein A6013_19681 [Acinetobacter sp. 6013150]
 gi|301347426|ref|ZP_07228167.1| hypothetical protein AbauAB0_14283 [Acinetobacter baumannii AB056]
 gi|301513661|ref|ZP_07238898.1| hypothetical protein AbauAB05_18835 [Acinetobacter baumannii AB058]
 gi|301596501|ref|ZP_07241509.1| hypothetical protein AbauAB059_11822 [Acinetobacter baumannii
           AB059]
 gi|169147975|emb|CAM85838.1| putative permease (PerM family) [Acinetobacter baumannii AYE]
 gi|169151495|emb|CAP00258.1| putative permease (PerM family) [Acinetobacter baumannii]
 gi|183210762|gb|ACC58160.1| predicted permease [Acinetobacter baumannii ACICU]
 gi|193078086|gb|ABO13021.2| putative permease (PerM family) [Acinetobacter baumannii ATCC
           17978]
 gi|213057450|gb|ACJ42352.1| permease [Acinetobacter baumannii AB0057]
 gi|213987714|gb|ACJ58013.1| conserved hypothetical protein [Acinetobacter baumannii AB307-0294]
 gi|260409790|gb|EEX03090.1| permease [Acinetobacter baumannii ATCC 19606]
 gi|322509082|gb|ADX04536.1| Putative permease [Acinetobacter baumannii 1656-2]
 gi|323519112|gb|ADX93493.1| permease [Acinetobacter baumannii TCDC-AB0715]
          Length = 397

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 125/279 (44%), Gaps = 50/279 (17%)

Query: 111 SDIPGGM-W-ASEL--WTKHLSHPQSLKILSE-------TFLKTN----GIDFIPRFASR 155
             IP G+ W  +EL  W     H Q ++I ++        +++TN     I  +    ++
Sbjct: 91  DSIPAGIHWINAELLPWISSTFHVQQMEIDTDQMSKAVMDYVQTNYSADSIQAVLLKLAQ 150

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV----I 211
            G+ F+    +++ + I  F+F  D   + Q L  L    + A   +I R    V    +
Sbjct: 151 SGLNFIQIGGTVVLIPIIAFYFLLDWDRMLQNLRRLIPRPYEATTLQIVRECHSVLGAFV 210

Query: 212 RSTFL-----------GMTIIAIGEGLVLGSAYWLAGVPSHV--ALGVITAIMAMIPGGA 258
           +  FL           G+ +I +  GL++G    LA +  ++  A+G+I A++A +    
Sbjct: 211 KGQFLVMLLLGVVYAVGLQLIGLEVGLIIGMVAGLASIIPYLGFAVGIIAAVIASL---- 266

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
              F     +LL+ G +F      +  A+E +I    L+PFL+G  I L  +   F ++ 
Sbjct: 267 -FQFGMDWTHLLLVGVVF-----MIGQAVEGYI----LQPFLLGDKIGLSPVAVVFAVLA 316

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           G +  G LG+ I   + A+I V+ K     ++EN E+ S
Sbjct: 317 GAQLAGFLGMLIALPVAAVIVVLLKH----LRENYERSS 351


>gi|124484941|ref|YP_001029557.1| hypothetical protein Mlab_0113 [Methanocorpusculum labreanum Z]
 gi|124362482|gb|ABN06290.1| protein of unknown function UPF0118 [Methanocorpusculum labreanum
           Z]
          Length = 346

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 11/132 (8%)

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTA-VSIYLL----IKGNIFNATCLFLWGAI 287
           + L G    +    + A+ A+IP   P+     V IY L    I+G I  AT  +    +
Sbjct: 213 FLLLGYGHEIFFSTMCALFALIPVLGPLMVIIFVGIYALCLGDIRGVILTATLGYFLTCV 272

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              + D  +RP L G  +K+  +  F G  GG   MGLLG  +GPVL+ L    ++   +
Sbjct: 273 ---LTDLIIRPKLTGKRVKIRPMLMFVGFFGGAMAMGLLGFVLGPVLLILGLTAYE---I 326

Query: 348 AIKENKEKISSN 359
            IKE ++K +S 
Sbjct: 327 FIKEGRKKNASE 338


>gi|126642639|ref|YP_001085623.1| PerM family permease [Acinetobacter baumannii ATCC 17978]
          Length = 370

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 125/279 (44%), Gaps = 50/279 (17%)

Query: 111 SDIPGGM-W-ASEL--WTKHLSHPQSLKILSE-------TFLKTN----GIDFIPRFASR 155
             IP G+ W  +EL  W     H Q ++I ++        +++TN     I  +    ++
Sbjct: 64  DSIPAGIHWINAELLPWISSTFHVQQMEIDTDQMSKAVMDYVQTNYSADSIQAVLLKLAQ 123

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV----I 211
            G+ F+    +++ + I  F+F  D   + Q L  L    + A   +I R    V    +
Sbjct: 124 SGLNFIQIGGTVVLIPIIAFYFLLDWDRMLQNLRRLIPRPYEATTLQIVRECHSVLGAFV 183

Query: 212 RSTFL-----------GMTIIAIGEGLVLGSAYWLAGVPSHV--ALGVITAIMAMIPGGA 258
           +  FL           G+ +I +  GL++G    LA +  ++  A+G+I A++A +    
Sbjct: 184 KGQFLVMLLLGVVYAVGLQLIGLEVGLIIGMVAGLASIIPYLGFAVGIIAAVIASL---- 239

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
              F     +LL+ G +F      +  A+E +I    L+PFL+G  I L  +   F ++ 
Sbjct: 240 -FQFGMDWTHLLLVGVVF-----MIGQAVEGYI----LQPFLLGDKIGLSPVAVVFAVLA 289

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           G +  G LG+ I   + A+I V+ K     ++EN E+ S
Sbjct: 290 GAQLAGFLGMLIALPVAAVIVVLLKH----LRENYERSS 324


>gi|323136904|ref|ZP_08071984.1| protein of unknown function UPF0118 [Methylocystis sp. ATCC 49242]
 gi|322397665|gb|EFY00187.1| protein of unknown function UPF0118 [Methylocystis sp. ATCC 49242]
          Length = 386

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 132/308 (42%), Gaps = 30/308 (9%)

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASE 121
           A + T++ + L I P+ ++    +  +K +++     +    P P  + D P  G W   
Sbjct: 79  AALMTIAGLVLIIGPVTWMGVGVIDPLKGVLAGFENGDLSVPPPPEAVKDWPLIGDWLFS 138

Query: 122 LWTKHLS--HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            W    +  H    +IL +  LK  G +++   A   G+  L + LS+        F   
Sbjct: 139 YWELASTNIHGALAQILPQ--LKPVG-EYLLAGARNAGLGTLKFLLSVALA----GFLLA 191

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G  +   + +L   + P    K   +    I +   G+  +++ + ++ G    LAGVP
Sbjct: 192 SGPQLLVGIRALARRIDPTNGDKFVNLAGDTINAVSRGVMGLSLMQAVIGGLGMSLAGVP 251

Query: 240 SHVALGVITAIMAMIPGG-----APISF---TAVSIYLLIKGNIFNATCLFLWGAIELFI 291
               L +   ++ ++  G     AP+ F   T ++    +   I  AT  ++        
Sbjct: 252 GASLLTLAILVLGIVQIGPLLIVAPVIFWAWTHMTTGPALALTICMATVNYM-------- 303

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            D  L+PFL+   +  P    F G++GGV   G+ GLF+GPV++   AV+W+     I +
Sbjct: 304 -DNVLKPFLLAHGLSTPMGVIFIGVIGGVLAHGVAGLFVGPVVL---AVVWELGKAWIAD 359

Query: 352 NKEKISSN 359
           + ++  ++
Sbjct: 360 DLDETRND 367


>gi|303237018|ref|ZP_07323590.1| putative membrane protein [Prevotella disiens FB035-09AN]
 gi|302482798|gb|EFL45821.1| putative membrane protein [Prevotella disiens FB035-09AN]
          Length = 376

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 75/359 (20%), Positives = 148/359 (41%), Gaps = 25/359 (6%)

Query: 12  MRWMIM----FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +RW+++    F IL  + +L     P   A ++ +   P+ +    K +     LAVI T
Sbjct: 12  IRWVLIAALVFSILYIVNYLSHVLLPFFIAWLLAYLLNPVVNFVQHKMKVKVRALAVIIT 71

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKE----LVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           + ++   I  +++     M++  E    + ++ V  N     +  W+ D     W  E  
Sbjct: 72  MLLVVAIITGVMYTIIPPMVDQFEKLGAVANRYVQQNTPSNNLTAWIKD-----WIQEYL 126

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +   + +S K  +ET    N I  +     +   I L    S+I  ++ LFF   D   
Sbjct: 127 PQINEYFKS-KDFTETI--KNAIPKLFTVVGQTASIVLSIVASLI-TLLYLFFILLDYDY 182

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + +    +      ++WK + + V   +     G  ++A+  G++    + + G P  + 
Sbjct: 183 LVKNFVRIFPKKHRSFWKDLMQDVETEMNKYIRGQGLVALTMGILFCIGFTIIGFPMAIG 242

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLI----KGNIF---NATCLFLWGAIELFIVDKTL 296
           +G++  I+ +IP    ++   ++   L+    KG  F     T + ++  I+L + D  +
Sbjct: 243 MGILIGILTLIPYLHSLALIPMAFLSLLEAADKGQNFWVVFGTAILVFAIIQL-LCDLVV 301

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            P ++G  + L        L      +G +GL I   L  LI   WK  +    ENK+K
Sbjct: 302 TPRIMGKTMNLNPAILLLSLSVWGALLGFIGLIIALPLTTLIIAYWKRYVTKEDENKQK 360


>gi|242310532|ref|ZP_04809687.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239522930|gb|EEQ62796.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 353

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 23/162 (14%)

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           QQ+ SL        + ++S ++  V  S+ L M +    +G++ G      G  + + LG
Sbjct: 191 QQIKSL--------YDEVSAVISVVFYSSILSMVL----QGMLFGILMAFYGY-NAILLG 237

Query: 246 VITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPF---- 299
           V     ++IP  G  + +  V+ Y L  GN  NA  + L+  I +  I D  ++PF    
Sbjct: 238 VFYGFASLIPVVGGTLVWLPVACYELYLGNFTNAIIITLYSIIVIATIADNGVKPFIIAF 297

Query: 300 ----LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
               L+  P+K+  +  FF ++ G+ + G  G+ +GP + AL
Sbjct: 298 INRVLIEEPVKINEMLIFFAIIAGLSSFGFWGIVLGPAITAL 339


>gi|154173718|ref|YP_001408692.1| acid membrane antigen A [Campylobacter curvus 525.92]
 gi|112802392|gb|EAT99736.1| acid membrane antigen A [Campylobacter curvus 525.92]
          Length = 348

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 133/327 (40%), Gaps = 33/327 (10%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           +Y  K F   +  A ++   +  I   F+   +E  T  A + T  +  LFI P    F 
Sbjct: 21  VYLFKPFLLDIFIAALLAVATSNINVLFLKLTKERKTLSAALTTAVLFTLFIAP----FL 76

Query: 84  YGMLEMKELVSKVVLANQHGI--PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
           Y ++E+    S   + N  G    +  +   +P  +   E   K       +K ++   L
Sbjct: 77  YAVIELTRYASTFNMNNITGTIDYIKNYDFALPSSIEFLEPKFKEFIAQIDIKAITANIL 136

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            TN         +  G +   +   + F+++  FF    G     +L    +   P    
Sbjct: 137 -TN--------LANLGKLSAKFITDVAFILVFFFFAILYG----NELVIYMKKALPMKES 183

Query: 202 KISRIVPK---VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-G 257
           +   I+ +   V+      + I AI +GL+      + G    + +G++ A M++IP  G
Sbjct: 184 ESGFILSEMANVMSVVLYSIIINAILQGLLFAFITIIYGYNGFL-MGILFAFMSLIPVVG 242

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPF--------LVGGPIKLP 308
             +++  +S+Y L  GN   A  + L+  I +  I D  L+P         LV  P K+ 
Sbjct: 243 GVLAWAPISLYELANGNATGAIVIALYTIIVISVIADTFLKPLVIKFINDKLVKIPTKIN 302

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLM 335
            L  FF ++ G+ T G  GL +GP ++
Sbjct: 303 ELLIFFAMIAGITTFGFWGLILGPAIV 329


>gi|295135659|ref|YP_003586335.1| hypothetical protein ZPR_3833 [Zunongwangia profunda SM-A87]
 gi|294983674|gb|ADF54139.1| membrane protein, UPF0118 [Zunongwangia profunda SM-A87]
          Length = 339

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 1/124 (0%)

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIY 268
           +++S  LG+ ++A  +GL+    Y + GVP       ITAI +MIP  G  I     +I 
Sbjct: 192 LVKSNALGIPLVAFVQGLIALIGYLVLGVPDPFFWFGITAIGSMIPFIGTAIGIAPTTIL 251

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L   G  +    L ++G + +   D  +R  ++    K+  L T  G++ GV+  G +GL
Sbjct: 252 LFADGQNWQGVALLIYGIVVVGSTDNLIRIMVLDRLAKVHTLITLVGVIVGVQIFGFIGL 311

Query: 329 FIGP 332
             GP
Sbjct: 312 IFGP 315


>gi|320535789|ref|ZP_08035870.1| hypothetical protein HMPREF9554_00591 [Treponema phagedenis F0421]
 gi|320147337|gb|EFW38872.1| hypothetical protein HMPREF9554_00591 [Treponema phagedenis F0421]
          Length = 365

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 99/202 (49%), Gaps = 23/202 (11%)

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK---VIRSTFLGMT 219
           + +S++F    L+FFY DG      L +L   + P      ++++ K   V  +   G+ 
Sbjct: 170 FAVSLVFTCFTLYFFYIDG----HYLLNLFISIMPIKADASTKLLNKFNEVTTNLLKGLF 225

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGAPISF-TAVSIYLL---IKG 273
           +++  + ++    Y +  V   + L ++T   + +P  G A + F   + I LL   +KG
Sbjct: 226 LVSFYQCIISLIIYLIFKVEGALLLAILTFFSSFLPLVGCAFVWFPIGIGICLLEGWLKG 285

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
            IF    L + G +  F+ D  LRPF +   IK+  L  FF ++GGV+ +G  G+ +GP+
Sbjct: 286 IIF----LLVAGTLISFM-DNFLRPFFLKDRIKIHPLLIFFSMLGGVQMLGFNGIILGPM 340

Query: 334 LMALIAVIWKESIMAIKENKEK 355
           +     VI   +I+ I  + EK
Sbjct: 341 I-----VILFFTIIDIAHDSEK 357


>gi|269793324|ref|YP_003318228.1| hypothetical protein Taci_1732 [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269100959|gb|ACZ19946.1| protein of unknown function UPF0118 [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 355

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 63/126 (50%), Gaps = 1/126 (0%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSI 267
           +V+R+  +G  +  + +G +    +W +G+P+    G+     + IP  G  + +   + 
Sbjct: 206 RVMRAVIVGSVLTGLVQGGLGALGWWFSGLPNWATAGLGMFACSFIPVVGTALVWLPGAA 265

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           YL + G+I     L  WGA+ +  +D  +RP  +    +   L    G++GG+   G+ G
Sbjct: 266 YLALTGSIKGGLILAAWGALVVSSIDHLVRPLFMSSGEEASTLLMMVGVLGGLAAWGVPG 325

Query: 328 LFIGPV 333
           LF+GPV
Sbjct: 326 LFMGPV 331


>gi|323495911|ref|ZP_08100979.1| permease [Vibrio sinaloensis DSM 21326]
 gi|323319127|gb|EGA72070.1| permease [Vibrio sinaloensis DSM 21326]
          Length = 361

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 82/170 (48%), Gaps = 8/170 (4%)

Query: 193 EHLFP---AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            H+ P   +   K+   V +V +S  +G  + A+ +G   G   WLAG P  +  G +  
Sbjct: 192 RHILPLSRSQEDKLLDEVEQVSKSAVMGSFLTALAQGFAGGLGMWLAGFPG-LFWGTMMG 250

Query: 250 IMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
             + IP  G  + +   +IYL + G+   A  L +W    +  +D  LRPFL+ G   + 
Sbjct: 251 FASFIPVVGTALIWIPATIYLFLTGDTTWAIFLAIWSIAVVGSIDNLLRPFLMQGSAGMN 310

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV---IWKESIMAIKENKEK 355
            L  FF L+GG+   GL+GL  GP++ A+  V   I++E        +++
Sbjct: 311 TLMIFFSLLGGLHLFGLIGLIYGPLIFAITMVLFNIYEEEFQDFLSRQDQ 360


>gi|227877174|ref|ZP_03995248.1| permease [Lactobacillus crispatus JV-V01]
 gi|256842728|ref|ZP_05548216.1| permease [Lactobacillus crispatus 125-2-CHN]
 gi|256848962|ref|ZP_05554396.1| permease [Lactobacillus crispatus MV-1A-US]
 gi|262045695|ref|ZP_06018659.1| permease [Lactobacillus crispatus MV-3A-US]
 gi|293380173|ref|ZP_06626255.1| conserved hypothetical protein [Lactobacillus crispatus 214-1]
 gi|295692527|ref|YP_003601137.1| permease [Lactobacillus crispatus ST1]
 gi|312977748|ref|ZP_07789495.1| putative membrane protein [Lactobacillus crispatus CTV-05]
 gi|227863228|gb|EEJ70673.1| permease [Lactobacillus crispatus JV-V01]
 gi|256614148|gb|EEU19349.1| permease [Lactobacillus crispatus 125-2-CHN]
 gi|256714501|gb|EEU29488.1| permease [Lactobacillus crispatus MV-1A-US]
 gi|260573654|gb|EEX30210.1| permease [Lactobacillus crispatus MV-3A-US]
 gi|290923217|gb|EFE00138.1| conserved hypothetical protein [Lactobacillus crispatus 214-1]
 gi|295030633|emb|CBL50112.1| Permease [Lactobacillus crispatus ST1]
 gi|310895487|gb|EFQ44554.1| putative membrane protein [Lactobacillus crispatus CTV-05]
          Length = 395

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 4/170 (2%)

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           LFF  +DG  +   +       +   + K+   +   + S   G   +A   G++    Y
Sbjct: 195 LFFMLKDGHQLRPYITKFAPEKWQPSFSKLLYDINYAVASYVRGQITVAFWVGVMFSLGY 254

Query: 234 WLAGVPSHVALGVITAIMAMIPG-GAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFI 291
            L G+P  VAL ++   M +IP  G P++   V  I ++  G++     +    AIE  I
Sbjct: 255 ILIGLPYGVALAILAGFMNLIPYFGTPLAMIPVIVISIMTSGSMLIKVLIVF--AIEQTI 312

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             + L P+++G  +++  + T   L+G     GL G+  G  + A++ +I
Sbjct: 313 ESRILSPWVMGNKMEMHPITTILLLIGASAVWGLWGVVFGIPIYAILKII 362


>gi|260775444|ref|ZP_05884341.1| predicted permease [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608625|gb|EEX34790.1| predicted permease [Vibrio coralliilyticus ATCC BAA-450]
          Length = 361

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 82/170 (48%), Gaps = 8/170 (4%)

Query: 193 EHLFP---AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            H+ P   +   K+   V +V +S  +G  + AI +GL  G   WLAG P  +  G +  
Sbjct: 192 RHILPLSRSQEDKLLDEVEQVSKSAVMGSFLTAIAQGLAGGIGMWLAGFPG-LFWGTMMG 250

Query: 250 IMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
             + IP  G  + +   + YL + G+   A  L +W    +  +D  LRP L+ G   + 
Sbjct: 251 FASFIPVVGTALIWIPAAAYLFLTGDTTWAIFLTIWSVAVVGSIDNLLRPLLMQGSAGMN 310

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV---IWKESIMAIKENKEK 355
            L  FF L+GG+   GL+GL  GP++ A+  V   I++E      + +++
Sbjct: 311 TLMIFFSLLGGLHLFGLIGLIYGPLIFAITMVLFNIYEEEFQDFLDEQDQ 360


>gi|296108736|ref|YP_003615685.1| protein of unknown function UPF0118 [Methanocaldococcus infernus
           ME]
 gi|295433550|gb|ADG12721.1| protein of unknown function UPF0118 [Methanocaldococcus infernus
           ME]
          Length = 326

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 11/179 (6%)

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
           D  L +I ++   ++F +DG  I   +  +    +    + + + + ++ +S F+    +
Sbjct: 138 DLALKLIMVVFCTYYFLKDGEKIKDVILKITPTEYEYKVEILLKYLHEIYKSLFISCLFL 197

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLL----IKGNIF 276
           ++  G +    Y+L  +P    L V+TAI A +P  GA I +   S+Y+     IKG  F
Sbjct: 198 SVIIGFLAFIIYYLFSIPYPELLAVLTAIFAFLPIIGAWIIYLPASLYIALANPIKGLFF 257

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
              C+     I     D  LRP +V   I  P L     L+  + T+GL G  IGP+++
Sbjct: 258 LILCIVFLNIIP----DYILRPHIVSTDIH-PILVVIAFLIAPL-TLGLAGFAIGPLIV 310


>gi|73542584|ref|YP_297104.1| hypothetical protein Reut_A2900 [Ralstonia eutropha JMP134]
 gi|72119997|gb|AAZ62260.1| Protein of unknown function UPF0118 [Ralstonia eutropha JMP134]
          Length = 379

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 139/314 (44%), Gaps = 15/314 (4%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           FF  V+ ALI+  T +P+      +   S   +A +  +  + + +VP  +L    + E 
Sbjct: 39  FFDLVVWALILAVTIYPLQVRLRGRLGLSEGHIATLIVLLSIAIILVPA-YLLGVAVFES 97

Query: 90  KELVSKVVLANQHGIPVP-RWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            E    VV   +  IP P   ++  P  G      W +  +    L +     LK   + 
Sbjct: 98  VERAIDVVKDGRLSIPQPAESVASWPLVGQQLYAFWQQAATDLSGLLMKVAPQLKGFSVG 157

Query: 148 FIPRFAS-RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
            + + A    G++   + L I  +I+A   +   G   ++++ S    + P    +I  +
Sbjct: 158 LLAKLAGLGTGLLVFVFALIIAGIIMA---YGEMGSRSAERIAS--RIVGPDRGLRIVEL 212

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
               IR+   G+  IA  + +++G A+ +  +P    L +   ++ ++   A +    V 
Sbjct: 213 CTATIRAVAQGVVGIAFIQMMLIGVAFIVKDIPGAGLLALAVLLLGIMQLPATLITVPVI 272

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIV---DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
           +Y+        AT +F   +I +F+    D  L+P L+G  + +P      G +GG+ + 
Sbjct: 273 VYVFATEGTTFATIVF---SIYVFVAGLADNVLKPLLLGRGVDVPMPVVLIGALGGMVSG 329

Query: 324 GLLGLFIGPVLMAL 337
           G++GLFIGPV++A+
Sbjct: 330 GIIGLFIGPVMLAV 343


>gi|237803518|ref|ZP_04591103.1| lipoprotein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331025500|gb|EGI05556.1| lipoprotein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 211

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 7/176 (3%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             L+ +  F++ ++   ++ F SWP+        +   +  A++ ++  M L   PL++L
Sbjct: 19  ACLWVMAPFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAALVMSLCWMLLVAAPLVWL 78

Query: 82  FYYGMLEMKELVSKVVLANQHGIPV-PRWLSDIP-GGMWASELWTKHLSHPQSLKILSET 139
            +     +++    +      G+P  P+WL+ IP  G     +WT       +     + 
Sbjct: 79  GFNLADHVRDATGLIKNIQVDGLPDPPQWLAGIPLVGERLVGIWTTIDQQGAAFMTTVKP 138

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +L   G   + R A   G I L+  LSIIF     FFFYRDG  ++  + SL E L
Sbjct: 139 YLGEVGNWLLARSAQIGGGI-LELTLSIIFA----FFFYRDGPRLAAFVLSLLERL 189


>gi|226946440|ref|YP_002801513.1| hypothetical protein Avin_44170 [Azotobacter vinelandii DJ]
 gi|226721367|gb|ACO80538.1| Conserved hypothetical protein [Azotobacter vinelandii DJ]
          Length = 368

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 69/141 (48%)

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
           P   + +  +    IR+   G+  IA  + L++G  + L GVP    L +   ++ +I  
Sbjct: 203 PERGELLVELCTATIRTVAQGVLGIAFIQMLLVGVGFVLMGVPGAGLLALAVLLLGIIQV 262

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
            A +    V +Y+         T +F   +I   +VD  L+P L+G  + +P      G 
Sbjct: 263 PATLITVPVIVYVFSSEGASLTTIVFAVYSILAGLVDNVLKPLLLGRGVDVPMPVVLIGA 322

Query: 317 VGGVRTMGLLGLFIGPVLMAL 337
           +GG+   G+LGLFIGP+++A+
Sbjct: 323 LGGMVASGILGLFIGPIVLAV 343


>gi|283851774|ref|ZP_06369052.1| protein of unknown function UPF0118 [Desulfovibrio sp. FW1012B]
 gi|283572894|gb|EFC20876.1| protein of unknown function UPF0118 [Desulfovibrio sp. FW1012B]
          Length = 367

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 93/198 (46%), Gaps = 9/198 (4%)

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK---VIRSTFLGM 218
           +  L +  +++ LF+   +G  ++++L        P    +   I+ +   V RS  LG 
Sbjct: 159 NIGLQLFVLVMFLFYLLAEGEFLTERL----RRASPLRRDQEDAIIARFKAVSRSVLLGG 214

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFN 277
              ++  GLV G   W+AG+   +  G +  I ++IP  G  +      IYL+  G+   
Sbjct: 215 LGTSLAIGLVTGVGLWIAGITPFL-WGAVAVIASLIPVVGLSLILIPSIIYLVATGSWKM 273

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           A  L L+  + +  VD  +RP  + G  ++  +  F  ++GG+   G LGL  GP+ +++
Sbjct: 274 AIFLALYWLLVINSVDNVVRPLFMRGQARMSLVWVFVSILGGILLFGPLGLLYGPLALSI 333

Query: 338 IAVIWKESIMAIKENKEK 355
             + +   + A  E +++
Sbjct: 334 SFLFFDIFLEAQGETEDR 351


>gi|126650494|ref|ZP_01722717.1| hypothetical protein BB14905_07888 [Bacillus sp. B14905]
 gi|126592650|gb|EAZ86649.1| hypothetical protein BB14905_07888 [Bacillus sp. B14905]
          Length = 322

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 124/267 (46%), Gaps = 43/267 (16%)

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF-------LKT 143
           +++++++L ++     P ++S +      S++W   L   +++   +E F       L+ 
Sbjct: 53  QIMTQIILLSKQA---PYYISKL------SDMW---LHMQENISKYTEDFPPEVSTSLQK 100

Query: 144 NGIDFIPRFASRFGMIFLDYC-------------LSIIFMIIALFFFYRDGFSISQQLDS 190
             +DFI +    F + F +Y              +S++  +IALF F  D   + +    
Sbjct: 101 TTMDFIKKIEETF-LSFFNYSKVSAFFSEIPSLFISLLVYMIALFLFMLD---LPKLKRI 156

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV---PSH-VALGV 246
             ++L P   KKI  I+ ++  +TF G     +    ++G    +  +   P + + + +
Sbjct: 157 TYKYLKPNTAKKIKIILNRLKDATF-GYMKAHLFVSFIIGGVTLIGLLLIQPKYAITMTI 215

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           I  ++ ++P  G+ I      +Y L+ GN   A  LF+  AI L I+ + + P L+G  I
Sbjct: 216 IIWLIDIVPFLGSIIILAPWGLYHLLMGNTAIAVKLFILAAI-LLIIRRVVEPKLMGEHI 274

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGP 332
            L  LPT   +  G++  G++GL +GP
Sbjct: 275 GLSTLPTLIAMFIGLQLFGIIGLLVGP 301


>gi|209695373|ref|YP_002263302.1| membrane protein [Aliivibrio salmonicida LFI1238]
 gi|208009325|emb|CAQ79591.1| membrane protein [Aliivibrio salmonicida LFI1238]
          Length = 353

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 99/215 (46%), Gaps = 23/215 (10%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +   A   G  F+ + +S I  I  +F    D     +    + + L   + + ++ +  
Sbjct: 154 LASLAGSLGGGFIQFIISTI--IAGVFMANAD--KCERAFIVIADRLTGEHGEALTTLSK 209

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS---HVALGVITAIMAMIPGGA--PISFT 263
           K +RS   G+  +A+ + ++ G     AGVP+    + L ++ AI+ + P  A  P+ F 
Sbjct: 210 KTVRSVVQGVIGVAVIQSMMAGLGMAFAGVPAIGLWMLLVMLVAIIQLPPILALLPVIFY 269

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             S+       IF   C+ + G+      D  L+P L+     +P L    G +GG+   
Sbjct: 270 VFSVDTTTTAVIFLIWCIIVSGS------DAILKPMLLSRGSNIPMLVILLGALGGMAMS 323

Query: 324 GLLGLFIGPVLMAL---IAVIWKESIMAIKENKEK 355
           G++GLF+G V+++L   +  +W +S     E+KE+
Sbjct: 324 GIVGLFVGAVVLSLTYQLFTVWLDS-----ESKEE 353


>gi|325280258|ref|YP_004252800.1| hypothetical protein Odosp_1595 [Odoribacter splanchnicus DSM
           20712]
 gi|324312067|gb|ADY32620.1| protein of unknown function UPF0118 [Odoribacter splanchnicus DSM
           20712]
          Length = 349

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 63/320 (19%), Positives = 142/320 (44%), Gaps = 37/320 (11%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
            I KK    + +A +  +  + +F++P+  + +        L+SK+   N      P+ L
Sbjct: 51  LIEKKHMKKSLMATLMLIETILIFLIPISLVVWL-------LISKLQAINLD----PKSL 99

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL----DYCLS 166
            +  G          H+S     K   +   K N I  +     + G I +    ++ ++
Sbjct: 100 MEPIG----------HVSKLVQEKTGYDVLSKGN-IGALLSVLPKVGQILMGSISNFIIN 148

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK---VIRSTFLGMTIIAI 223
           ++ +I+ L+F    G    ++++     + P   +    ++ +   V++S  +G+ ++AI
Sbjct: 149 VLVLILVLYFMLVGG----RKMEDYIIDILPFNQRNKRDVLHEFHMVVKSNAIGVPLLAI 204

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLF 282
            +G +    Y++ G P  +  GV++    +IP  G  I +  +++Y+   G+ + A  L 
Sbjct: 205 IQGGIAMLGYYIFGAPEVILWGVVSCFATVIPVIGVAIVWIPLALYIGATGHWWTALGLS 264

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA---LIA 339
           ++  + +  VD  +R  L         L T FG+V G+   G +G+  GP+L++   L  
Sbjct: 265 VYCIVIVANVDNLIRSVLQRKMADTHPLITIFGVVIGLSLFGFMGIIFGPLLLSIFVLCV 324

Query: 340 VIWKESIMAIKENKEKISSN 359
            I+K   +   + +++++  
Sbjct: 325 QIFKAEYLEEPQGQKRLTGR 344


>gi|288941027|ref|YP_003443267.1| hypothetical protein Alvin_1296 [Allochromatium vinosum DSM 180]
 gi|288896399|gb|ADC62235.1| protein of unknown function UPF0118 [Allochromatium vinosum DSM
           180]
          Length = 355

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 75/138 (54%), Gaps = 3/138 (2%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-P 259
           ++++R+   ++RS   G+  +A+ + ++ G  + + G+P+     ++  +++ +  G  P
Sbjct: 202 EELARLAETIVRSVTKGILGVALIQAILAGIGFMVMGIPAAGLWALLCLLLSTVQIGIFP 261

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           I+   + IY+    +   A    +W  I +  +D  L+P ++G  +++P    F G +GG
Sbjct: 262 ITLP-ILIYVFATADTVPAVLFLVWSLI-VGSLDNVLKPLVLGRGVQVPMAVIFVGAIGG 319

Query: 320 VRTMGLLGLFIGPVLMAL 337
             + G++GLF+G V++ L
Sbjct: 320 FISSGIIGLFVGAVVLTL 337


>gi|18977478|ref|NP_578835.1| hypothetical protein PF1106 [Pyrococcus furiosus DSM 3638]
 gi|18893179|gb|AAL81230.1| hypothetical protein PF1106 [Pyrococcus furiosus DSM 3638]
          Length = 326

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 2/112 (1%)

Query: 235 LAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IV 292
           ++ +P+ +  G++T + + IP     + + A SIYLL  G+   A  L  +GA  +  + 
Sbjct: 205 VSSLPTAILAGIVTILFSFIPLFEGWMVWLAGSIYLLNSGHFIRAILLAAYGAALVSPLP 264

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           D T+RP +V    K        G++GGV  MGL GL IGP+++ +   + +E
Sbjct: 265 DFTIRPKIVAKEAKFDETLVLIGMIGGVWAMGLKGLIIGPIVLNVAVEMLRE 316


>gi|170695146|ref|ZP_02886294.1| protein of unknown function UPF0118 [Burkholderia graminis C4D1M]
 gi|170139998|gb|EDT08178.1| protein of unknown function UPF0118 [Burkholderia graminis C4D1M]
          Length = 367

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 71/141 (50%)

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
           P    +I+ +    IR+   G+  IA  + L++G A+ + G+P    L +   ++ ++  
Sbjct: 203 PENGPQIAELCTSTIRAVAQGVVGIAFIQMLLIGVAFVVMGIPGAGLLALAVLLLGIMQL 262

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
            A +    V I+++    +   T +F        + D  L+P L+G  + +P      G 
Sbjct: 263 PATLITIPVIIFVIATQGVSAITIVFSVYVFVAGLADNVLKPLLLGRGVAVPMPVVLIGA 322

Query: 317 VGGVRTMGLLGLFIGPVLMAL 337
           +GG+ T G++GLFIGPV++A+
Sbjct: 323 LGGMVTGGVIGLFIGPVMLAV 343


>gi|120405597|ref|YP_955426.1| hypothetical protein Mvan_4645 [Mycobacterium vanbaalenii PYR-1]
 gi|119958415|gb|ABM15420.1| protein of unknown function UPF0118 [Mycobacterium vanbaalenii
           PYR-1]
          Length = 396

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 80/170 (47%), Gaps = 12/170 (7%)

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + L+ LG+ +   Y  K+  +V   ++  F    IIA+ +G+    + ++ G+     + 
Sbjct: 189 RDLNPLGQQVSDIYLAKVGAMVSATVKGQF----IIAVCQGVAGAVSVYIGGIHDGFFMF 244

Query: 246 VI-TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           VI   +++ IP G  I    + + + + GN      + ++  I +  +D  LRPFLV   
Sbjct: 245 VIFLTVLSFIPLGGGIVTIPLGVGMAVFGNPVGGIFVIVFHIIVVTNIDNLLRPFLVPKS 304

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA-------VIWKESIM 347
             L        +  G++  G +G+ +GPVLM +I        V++K++ M
Sbjct: 305 AHLHPALMLLAVFAGLQMFGFIGIVLGPVLMIVIVTTISVYLVVYKDAPM 354


>gi|261250291|ref|ZP_05942867.1| predicted permease [Vibrio orientalis CIP 102891]
 gi|260939407|gb|EEX95393.1| predicted permease [Vibrio orientalis CIP 102891]
          Length = 363

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 154/354 (43%), Gaps = 51/354 (14%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +   ++ A II    +PI+     +        ++++ + +  + +VPLLF+F       
Sbjct: 32  YINSIVMAFIISLLMFPIHEWLEKRLPNHHNITSLLSCIVLTFIVVVPLLFVF------- 84

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS--ETFLKTNGID 147
               + V   +     V +W+++  GG+ A         HP  +K LS   T+L  + I+
Sbjct: 85  ---AAIVQQGSNFSQNVYQWVTN--GGIQAI------FEHPWVVKGLSLINTYLPFDTIE 133

Query: 148 ------FIPRFASRFGMIFL-----------DYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                  + +FA+ FG   +            + +    M+  LFF  RD      ++ S
Sbjct: 134 PQEVAQKVAQFATSFGSNLVGISAKILGDATSFLMDFFLMLFVLFFLLRD----HDKIIS 189

Query: 191 LGEHLFP---AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              H+ P   +   K+   + +V +S  +G  + AI +G+  G   WLAG P  +  G +
Sbjct: 190 AMRHILPLSRSQEDKLLDEIEQVSKSAVMGSFLTAIAQGVAGGLGMWLAGFPG-LFWGTM 248

Query: 248 TAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV--GGP 304
               + IP  G  + +   +IYL + G+   A  L +W    +  +D  LRP L+   G 
Sbjct: 249 MGFASFIPVVGTALIWIPAAIYLYVTGDTTWAIFLTVWSVAIVGSIDNLLRPLLMQGSGN 308

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV---IWKESIMAIKENKEK 355
             +  L  FF L+GG+   GL+GL  GP++ A+  V   I++E      + +++
Sbjct: 309 AGMSTLMIFFSLLGGLHLFGLIGLIYGPLIFAITMVLFNIYEEEFQGFLDQQDR 362


>gi|317129332|ref|YP_004095614.1| sporulation integral membrane protein YtvI [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474280|gb|ADU30883.1| sporulation integral membrane protein YtvI [Bacillus
           cellulosilyticus DSM 2522]
          Length = 353

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 142/324 (43%), Gaps = 20/324 (6%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           LYF+     P++ ALI      PI +  I + + S +    I  +S + +  + + FL  
Sbjct: 24  LYFVLPVSVPIIVALITALFLAPIVNVLIRRAKLSRSLAVFIVFISFVLVISLIVYFLLT 83

Query: 84  YGMLEMKELVSKV-VLANQHGIPVPRWLSDIPG--GMWASELWTKHLSHPQSLKILSETF 140
             + ++   +  +    N+       +L++I    G ++ +L  +       +  L ET 
Sbjct: 84  RAITQLNSFIENLPYTINEIAYAWTTFLNNIESQFGQYSPDL--RQEIDDVVMGFLIETR 141

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD-----GFSISQQLDSLGEHL 195
           +    ID +    S    I   Y +S++  +IAL+ F  D       ++S   D   E +
Sbjct: 142 MNLQEIDLVGHVTSILIKI-PSYIVSLLVYLIALYLFLMDLPRLKEKAMSYMTDKTAEKV 200

Query: 196 -FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F A   ++S +V    ++ FL   II +    V     W+      + + ++  ++  I
Sbjct: 201 TFMA--SRLSYVVFGFFKAQFLVSIIIFV----VTLIGLWIIAPEVAIIMSIVIWVIDFI 254

Query: 255 PGGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P    I+  A  ++Y +I GN   A  L +  AI L  + +T+ P ++G  I L  L T 
Sbjct: 255 PIIGSIAVLAPWALYHIIAGNTALAVQLLVLAAI-LLTIRRTVEPKVMGHHIGLSPLATL 313

Query: 314 FGLVGGVRTMGLLGLFIGPVLMAL 337
             L  G++ +G+LG  +GP+++ L
Sbjct: 314 ISLFIGLQLLGVLGFILGPLVVIL 337


>gi|325475471|gb|EGC78652.1| membrane protein [Treponema denticola F0402]
          Length = 372

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 83/184 (45%), Gaps = 23/184 (12%)

Query: 190 SLGEHLFPAYWKKISRIVPKVIRST---FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           SL +H  P   +   ++  K+   T   F G+ +++  + L     Y + GV S + L +
Sbjct: 195 SLLKHAIPIDNETSDKLFSKIGEITTNLFKGLFLVSFYQCLASFIVYLIFGVQSALLLAI 254

Query: 247 ITAIMAMIP----------GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           +T     +P           G  + FT      L KG IF    L + G+I  F+ D  L
Sbjct: 255 LTFFSTFLPLVGCGLIWFPVGVGLCFTDG----LAKGLIF----LVVAGSIISFM-DNFL 305

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           RPF +   IK+  L  FF ++GGV      G+ +GP+++ L   I   + + I+E KE  
Sbjct: 306 RPFFLKDRIKIHPLLIFFSMLGGVSMFSFDGIILGPMIVILFFTILDMA-LDIEEKKEND 364

Query: 357 SSNF 360
             NF
Sbjct: 365 EDNF 368


>gi|119503128|ref|ZP_01625212.1| hypothetical protein MGP2080_10708 [marine gamma proteobacterium
           HTCC2080]
 gi|119460774|gb|EAW41865.1| hypothetical protein MGP2080_10708 [marine gamma proteobacterium
           HTCC2080]
          Length = 402

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 6/131 (4%)

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           RS   G+  +A+ + L+LG  +  A VP+   L V+  I  +I   A +    V I+L  
Sbjct: 248 RSVATGVIGVAVIQSLLLGIGFLWAEVPAAGVLAVLALITGIIQLPALLITLPVLIWLWT 307

Query: 272 KGNIFNATCLFLWGAIELFIV-----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
            G    A+ +     I ++++     D  L+P L+G  + +P      G +GG+  MGL+
Sbjct: 308 SGGAGEASAVMDV-VITIYLIIAGLADNVLKPILLGRGVDVPMPVVLIGALGGMVGMGLI 366

Query: 327 GLFIGPVLMAL 337
           GLFIG V++A+
Sbjct: 367 GLFIGSVVLAI 377


>gi|254227295|ref|ZP_04920727.1| hipothetical membrane protein [Vibrio sp. Ex25]
 gi|262396438|ref|YP_003288291.1| hypothetical protein VEA_001141 [Vibrio sp. Ex25]
 gi|151939907|gb|EDN58733.1| hipothetical membrane protein [Vibrio sp. Ex25]
 gi|262340032|gb|ACY53826.1| putative membrane protein [Vibrio sp. Ex25]
          Length = 382

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 74/144 (51%), Gaps = 5/144 (3%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           K  + ++   I+S  LG+  +A  + L++G+ +++ GVP+   L +I  I+ +    A +
Sbjct: 208 KSWTTLIAATIKSVLLGVVGVAAIQALLIGAGFFVFGVPAAGLLTLILMILCIAQLPALL 267

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
           +   V  ++ +  +   AT   +W  +   + +   +P L+G  + +P      G +GG+
Sbjct: 268 AVLPVIGFMYMTQDTTTATMFTVW-VVVAALSENLFKPMLMGRGVDVPMPVILLGAIGGM 326

Query: 321 RTMGLLGLFIGPVLMALIAVIWKE 344
              G++GLF+G V++A    IW E
Sbjct: 327 LFYGIVGLFLGAVILA----IWYE 346


>gi|261251647|ref|ZP_05944221.1| putative membrane protein [Vibrio orientalis CIP 102891]
 gi|260938520|gb|EEX94508.1| putative membrane protein [Vibrio orientalis CIP 102891]
          Length = 374

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 79/162 (48%), Gaps = 5/162 (3%)

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           S+S  L ++   +     +  + ++   I+S  LG+  +A  + L++G+ +++ G+P   
Sbjct: 190 SLSAGLTTIAVRVAGDNAQSWASMIAATIKSVLLGVIGVAAIQSLLIGAGFFVFGIPGAG 249

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L +I  I+ +    A +    +  Y+ +  +   AT   +W  +   + +   +P L+G
Sbjct: 250 ILTLILMILCIAQLPALLVVLPIVGYMYMTQDTTTATLFTVW-VVVAALSENIFKPMLMG 308

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             + +P      G +GG+   G++GLF+G V++A    IW E
Sbjct: 309 RGVDIPMPVILLGAIGGMLIYGIVGLFLGAVILA----IWYE 346


>gi|153006036|ref|YP_001380361.1| hypothetical protein Anae109_3181 [Anaeromyxobacter sp. Fw109-5]
 gi|152029609|gb|ABS27377.1| protein of unknown function UPF0118 [Anaeromyxobacter sp. Fw109-5]
          Length = 419

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 81/174 (46%), Gaps = 2/174 (1%)

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
            ++ + M++A++F   +G  + + LD +   L P   +++       + +  +     A 
Sbjct: 216 VVNTLVMVVAVYFLLAEGHRLIEWLDEM-TPLEPGQLRELLATFNGAVGAVVVSALATAG 274

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLF 282
            +  +  + + +AGVP      ++T + A++P  GA +    V+ +    G+   A  L 
Sbjct: 275 VQAALAFAGFLVAGVPQPAFFAIVTFVAALVPLVGANLVVLPVAAFHFAAGHTVAAGLLA 334

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
           LW    +  VD  L+P L+   + +     F  L+GG+ T G  G+ +GP+ +A
Sbjct: 335 LWSLGVVGTVDNLLKPVLMRRGLSVHVSLVFLALLGGLSTFGAAGIIVGPLALA 388


>gi|228470697|ref|ZP_04055548.1| hypothetical protein PORUE0001_1322 [Porphyromonas uenonis 60-3]
 gi|228307554|gb|EEK16550.1| hypothetical protein PORUE0001_1322 [Porphyromonas uenonis 60-3]
          Length = 401

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 130/293 (44%), Gaps = 29/293 (9%)

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLL--FLFYYGMLEMKELVSKVVLANQHGIPVPRW 109
           + +K    ++ A + TV  +  F++P+L   L    +    +  S  VL  Q    + + 
Sbjct: 64  VERKHWGRSWAASLLTVEAIFFFLIPILGIVLMLIDLFSTFDPESLNVLTTQ-AQEMIQQ 122

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
           + D     +  ELW++   + Q L  +S + +K      + +  S F   FL+      F
Sbjct: 123 VED----RFGIELWSEE--NLQKLTSVSTSLVKG-----LLQGMSSF---FLN-----AF 163

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEG 226
           +I+ L +F   G+      +S  E L P   K    +S     +++S  +G+ ++A+ +G
Sbjct: 164 VILFLLYFMLRGYD---HFESAVEELLPFTGKNKRTVSSETISIVKSNAIGIPVLALVQG 220

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           +     Y + GV   +   V+T    +IP  G  I +  ++I + I G+  NA  L  +G
Sbjct: 221 VFAYIGYLIFGVEDALLFAVLTTFTTIIPVLGTMIVWVPMAIIMGINGDWLNAILLGAYG 280

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
            I +  VD   R  L      +  L T FG+  G+   G  G+  GP++++LI
Sbjct: 281 FIVIGGVDNVARLLLQKQMANIHPLITIFGVFIGLSLFGFWGVIFGPLILSLI 333


>gi|166369036|ref|YP_001661309.1| hypothetical protein MAE_62950 [Microcystis aeruginosa NIES-843]
 gi|166091409|dbj|BAG06117.1| hypothetical protein MAE_62950 [Microcystis aeruginosa NIES-843]
          Length = 358

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 92/188 (48%), Gaps = 9/188 (4%)

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
            A+  G+  L +  SI+    AL    ++   +++ ++ L E + P     ++ +    +
Sbjct: 153 LATSTGLTVLKFIASILIAA-ALTLSAKN---LTRPMNRLAEKIAPGRGIALAGLTASTV 208

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R+   G+  +AI + L++G      G P+   L ++T I+ ++  G  +      I+  +
Sbjct: 209 RNVSRGIIGVAIIQSLLIGIGLVTVGTPAAGLLTLLTLILGILQIGPGLIVLGALIHAWV 268

Query: 272 KGNIFNATCLF--LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
              + N+  L   LW  I   +VD  L+P L+G  + +P +    G+ GGV   G++GLF
Sbjct: 269 --TLPNSIALLFTLW-MIPATLVDNFLKPILMGRGLPIPMVVILLGVFGGVIAYGIIGLF 325

Query: 330 IGPVLMAL 337
           +GPVL+ L
Sbjct: 326 VGPVLLGL 333


>gi|169829827|ref|YP_001699985.1| hypothetical protein Bsph_4404 [Lysinibacillus sphaericus C3-41]
 gi|168994315|gb|ACA41855.1| UPF0118 membrane protein in ctaF 3'region [Lysinibacillus
           sphaericus C3-41]
          Length = 352

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 124/268 (46%), Gaps = 45/268 (16%)

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF-------LKT 143
           +++++++L ++     P ++S +      S++W   L   +++   +E F       L+ 
Sbjct: 83  QIMTQIILLSKQA---PYYISKL------SDMW---LHMQENISKYTEDFPPEVSTSLQK 130

Query: 144 NGIDFIPRFASRFGMIFLDYC-------------LSIIFMIIALFFFYRDGFSISQQLDS 190
             +DFI +    F + F +Y              +S++  +IALF F  D   + +    
Sbjct: 131 TTMDFIKKIEETF-LSFFNYSKVSAFFSEIPRLFISLLVYMIALFLFMLD---LPKLKRI 186

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV----PSH-VALG 245
             ++L P   KKI  I+ ++  +T LG     +    ++G    L G+    P + + + 
Sbjct: 187 TYKYLKPNTAKKIKIILNRLKDAT-LGYMKAHLFVSFIIGGVT-LVGLLLIQPKYAITMT 244

Query: 246 VITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           +I  ++ ++P  G+ I       Y L+ GN   A  LF+  AI L I+ + + P L+G  
Sbjct: 245 IIIWLIDIVPFLGSIIILAPWGFYHLLMGNTAIAVKLFILAAI-LLIIRRVVEPKLMGDH 303

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
           I L  LPT   +  G++  G++GL IGP
Sbjct: 304 IGLSTLPTLIAMFIGLQLFGIIGLLIGP 331


>gi|30248120|ref|NP_840190.1| hypothetical protein NE0089 [Nitrosomonas europaea ATCC 19718]
 gi|30180005|emb|CAD84000.1| Domain of unknown function DUF20 [Nitrosomonas europaea ATCC 19718]
          Length = 352

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 146/340 (42%), Gaps = 32/340 (9%)

Query: 7   NPQGIMRWMIMFIILVS--LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +P   + W +  I +VS  +Y L     P L A +I +   P+ + ++  ++   T   +
Sbjct: 6   SPDSRLFWYLTVIGVVSALIYLLSPILTPFLLAAVIAYICNPLVT-WLEARKIPRTLSTI 64

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKV----VLANQHGIPVPRWLSDIPGGMWAS 120
              +  M +FI   L LF     E+  LV ++     L     IP   WL D     +  
Sbjct: 65  FVMLMTMGIFIAMALILFPLFEKEVSRLVERIPSFLDLVKSQFIP---WLED----NFNV 117

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGI--DFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
           EL     S  Q   +L+E +    G+    +P   S  G+I L + ++++ + + LF+  
Sbjct: 118 ELQIDIASLKQ---MLTEHWKSAGGVAAQMLPSLKSG-GLILLTFLMNLVLVPVVLFYLL 173

Query: 179 RDGFSISQQLDSLGEHLFPAYWKK----ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           RD  ++ +Q   +GE L P  W+K    ++R    V+     G T +     +   +  W
Sbjct: 174 RDWNNLIRQ---VGE-LIPPVWQKQIFTLARETDDVLAEFMRGETAVITIMSIYYVTGLW 229

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLW---GAIELFI 291
           L  +   + +G+I+ I+  +P    I+  A++ +  I      +  + +W   G+ +L +
Sbjct: 230 LVKLEFALPIGLISGILVFVPYLGTITGLALATFAAITQFQEWSGVIAVWVVVGSGQL-L 288

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
               + P LVG  I L  +   F L+   +  G +G+ + 
Sbjct: 289 ESMLITPRLVGERIGLHPVAVIFALLAFGQLFGFIGILLA 328


>gi|322378404|ref|ZP_08052858.1| membrane protein [Helicobacter suis HS1]
 gi|322380085|ref|ZP_08054341.1| aminoacylase [Helicobacter suis HS5]
 gi|321147492|gb|EFX42136.1| aminoacylase [Helicobacter suis HS5]
 gi|321149160|gb|EFX43606.1| membrane protein [Helicobacter suis HS1]
          Length = 351

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 130/303 (42%), Gaps = 41/303 (13%)

Query: 76  VPLLFLFYYGM-----LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +PL FL Y  M     L ++ L       N+    +  ++ D P     S+   K LS+ 
Sbjct: 69  IPLYFLIYKSMDFVFHLNLERLS---FFINKFKTDLLMYVQDFPT---LSQYAHKILSNV 122

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF--FFYRDGFSISQQL 188
            +  ++S          +I  F+S  G   L +    + +++ LF  FFY   F  S  L
Sbjct: 123 SAQALMS----------YILHFSSDIGKYSLKFASDTVMVLVFLFLCFFYGQTFY-SYIL 171

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL-GSAYWLAGVPSHVALGVI 247
           + L      +  K I R V  ++R   L   I  + +G+   G   W       ++LGV+
Sbjct: 172 EVLPFEKIQS--KGIFREVAGILRVVLLTSIINVVLQGVAFAGLVVWFK--LDWLSLGVL 227

Query: 248 TAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLVGG- 303
             + A+IP  GGA + +  V+ Y + +GNI  A  + L+  I +  ++D  ++P+L+G  
Sbjct: 228 YGLSALIPIVGGALV-WIPVAFYEMYRGNITGAVVIALYSLILIGGLIDSLIKPWLIGFI 286

Query: 304 -------PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
                   +K+  +  FF ++ G+   G  G+ +GP + A   V+ +           K+
Sbjct: 287 KRRVLKISLKINEILIFFSILAGISKFGFWGIAVGPTITAFFIVLLRVYEKVFTSTARKM 346

Query: 357 SSN 359
            S 
Sbjct: 347 PSQ 349


>gi|312887141|ref|ZP_07746745.1| protein of unknown function UPF0118 [Mucilaginibacter paludis DSM
           18603]
 gi|311300453|gb|EFQ77518.1| protein of unknown function UPF0118 [Mucilaginibacter paludis DSM
           18603]
          Length = 362

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 74/143 (51%), Gaps = 2/143 (1%)

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
           R   K+++S  +G+ I      ++LG A W+ G+ + + +G+I A + +IP    +    
Sbjct: 198 RQTEKMVKSYLIGLLIQITYIIILLGGALWILGIQNALLIGIIFAFLNLIPYLGALIGNI 257

Query: 265 VSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
           + + L +  +   +  L + GAI    F+ +  L P +VG  +K+  L +  G++ G   
Sbjct: 258 LGVLLTLASSDKISDVLIVLGAITFVQFLDNNILMPRIVGSQVKINALVSIVGIIIGGVM 317

Query: 323 MGLLGLFIGPVLMALIAVIWKES 345
            GL G+F+   +++++ +++  S
Sbjct: 318 AGLSGMFLAMPIISILKIVFDRS 340


>gi|315230246|ref|YP_004070682.1| hypothetical protein TERMP_00482 [Thermococcus barophilus MP]
 gi|315183274|gb|ADT83459.1| hypothetical membrane protein [Thermococcus barophilus MP]
          Length = 346

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 11/127 (8%)

Query: 238 VPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKT 295
           V   +A G++  ++ ++P  G  I +   + YL+  GNI       ++GA+ +  I D T
Sbjct: 213 VSGAIAAGILCIVLELLPVIGGWILWAIGAAYLIKTGNIALGVLFAVYGAVFISPIPDIT 272

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI---WKESIMAIKEN 352
           +RP LV    K+  +    G+ GG+ + G+ G+ IGPV + L+  +   WKE      + 
Sbjct: 273 IRPKLVAEGAKVSSVVALVGIFGGIMSFGIKGVIIGPVALGLLVTLLEEWKE------QE 326

Query: 353 KEKISSN 359
           KE +S  
Sbjct: 327 KETLSKE 333


>gi|224026079|ref|ZP_03644445.1| hypothetical protein BACCOPRO_02832 [Bacteroides coprophilus DSM
           18228]
 gi|224019315|gb|EEF77313.1| hypothetical protein BACCOPRO_02832 [Bacteroides coprophilus DSM
           18228]
          Length = 334

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 88/183 (48%), Gaps = 8/183 (4%)

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV---IRSTFLGM 218
            + ++I  +II L+F    G  + Q +      + P   +    ++ ++   +RS  +G+
Sbjct: 145 SFTVNIGVLIIVLYFMLIGGKRMEQYI----YEILPFNEENKKEVLTEIHLLVRSNAIGI 200

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN 277
            ++A+ +G++    Y+L   PS +  G +T    +IP  G  + +  ++ Y+ I G+  +
Sbjct: 201 PLLAVIQGMIASLGYYLFDAPSVLLFGFLTCFATIIPIVGTALVWIPLAAYMAISGDWPH 260

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           A  L L+  + +  +D  +R  L         L T FG+  G+   G +G+  GP+L+++
Sbjct: 261 ALGLVLYCGLIVTNIDNLIRFILQKKLADTHPLITIFGVFIGLPLFGFMGIIFGPLLLSV 320

Query: 338 IAV 340
             V
Sbjct: 321 FLV 323


>gi|222479371|ref|YP_002565608.1| protein of unknown function UPF0118 [Halorubrum lacusprofundi ATCC
           49239]
 gi|222452273|gb|ACM56538.1| protein of unknown function UPF0118 [Halorubrum lacusprofundi ATCC
           49239]
          Length = 345

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 83/166 (50%), Gaps = 9/166 (5%)

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLG 230
           LF   RDG    +QL +  + + P     +  +   + +++ ++ +G   +A  +  +LG
Sbjct: 165 LFALLRDG----EQLVAWVQWVLPVDEDILDELREGLDQLMWASVVGNVAVAAIQAALLG 220

Query: 231 SAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
               +AG+P+ + L V+T ++ ++P  GA   +   ++YLL  G    +  + ++G +  
Sbjct: 221 VGLAIAGLPAVIFLTVVTFVLTLLPLVGAFGVWVPAAMYLLAVGRPIASAAIAVYGLLVT 280

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
           F  D  LRP L+G            G+ GG+   G +GLFIGPV++
Sbjct: 281 F-SDTYLRPALIGRTGAFNSAIIVIGIFGGLVVFGAVGLFIGPVVL 325


>gi|150009736|ref|YP_001304479.1| hypothetical protein BDI_3151 [Parabacteroides distasonis ATCC
           8503]
 gi|255012973|ref|ZP_05285099.1| hypothetical protein B2_03653 [Bacteroides sp. 2_1_7]
 gi|149938160|gb|ABR44857.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
          Length = 337

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 85/174 (48%), Gaps = 8/174 (4%)

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV---IRSTFLGMT 219
           + ++++ +I  L+F    G  +   L +L    FP   +    ++ ++   ++S  +G+ 
Sbjct: 148 FAVNVVVLIFILYFMLIGGRKMENYLYTL----FPFSDQNKDEVLNEINMIVKSNAIGIP 203

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNA 278
           ++A+ +G+V    Y++   P  +  G +T I  +IP  G  + +  ++ Y+ + G+  +A
Sbjct: 204 LLAVIQGIVAVIGYFIFQTPDPLLFGFLTCIATIIPIVGTALVWVPLAAYMALNGDWVHA 263

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
             L ++  + +  VD  +R  L      +  L T FG+V G+   G +G+  GP
Sbjct: 264 LGLAIYALLVITNVDNLIRFILQKKLADIHPLITVFGVVIGLSLFGFMGIIFGP 317


>gi|51244045|ref|YP_063929.1| hypothetical protein DP0193 [Desulfotalea psychrophila LSv54]
 gi|50875082|emb|CAG34922.1| hypothetical membrane protein [Desulfotalea psychrophila LSv54]
          Length = 365

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 80/360 (22%), Positives = 146/360 (40%), Gaps = 62/360 (17%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSS---FISKKEESSTFLAV 64
           P  I  ++++F I  + +FL     P  S L++ F    I+     F+SK+   S     
Sbjct: 17  PMRIKYFLLVFAI--AFFFLGRILWPFWSILVLSFLLVNIFQPVYLFLSKQLPRSV---- 70

Query: 65  IATVSVMCLFIVPLLF---LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
                + CL I+ L+F   LF+ G L                +    W+ D       S+
Sbjct: 71  --ASGLTCLMIIALVFFPLLFFTGAL------------TGEALSFYNWVRD-------SQ 109

Query: 122 LWTKHLSHPQSLKILS--ETFLKTNGIDFIPR--------FASRFGMIFLDYCLS----- 166
           +W +     Q  + ++  +  LK  GIDF P         FA   G+   D   S     
Sbjct: 110 VWMRFQDFIQQSQFITRMQAPLKDFGIDFQPAQITASLAYFAKAGGLFLYDQASSWAANI 169

Query: 167 ------IIFMIIALFFFYRDGFSISQ---QLDSLGEHLFPAYWKKISRIVPKVIRSTFLG 217
                    MI+ +FF + D   + +   +L  L E       KK   I   +++ + + 
Sbjct: 170 LQSVALFFIMILVIFFLFMDLLRLKEFLFKLSPLPEDENRLLVKKFEEIANAILKGSGIC 229

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIF 276
             I  I  G++      +  +PS +  G I +++A +P  G  +     ++ L I G   
Sbjct: 230 GIIQGIIGGVLFS----IMHLPSPILWGCIMSVLAFLPIFGIGLVMLPAALALAIDGQTA 285

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            A+ L +   +    ++  ++P LVG  +++  L  F  ++GG+   G+LG+  GP+++ 
Sbjct: 286 TASSLVISYLVLSLGMEYLIKPKLVGSQVEMHTLLVFLSIIGGISVYGILGIIYGPLIIT 345


>gi|154248269|ref|YP_001419227.1| hypothetical protein Xaut_4349 [Xanthobacter autotrophicus Py2]
 gi|154162354|gb|ABS69570.1| protein of unknown function UPF0118 [Xanthobacter autotrophicus
           Py2]
          Length = 368

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 33/47 (70%)

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           +++  LRP ++   + +P L  F G +GG+ T G+LGLF+GPV++AL
Sbjct: 297 LIEHVLRPLMLARGVDVPMLVVFIGAIGGLLTSGVLGLFVGPVVLAL 343


>gi|262382952|ref|ZP_06076089.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|301307733|ref|ZP_07213690.1| conserved hypothetical protein [Bacteroides sp. 20_3]
 gi|262295830|gb|EEY83761.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|300834407|gb|EFK65020.1| conserved hypothetical protein [Bacteroides sp. 20_3]
          Length = 337

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 85/174 (48%), Gaps = 8/174 (4%)

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV---IRSTFLGMT 219
           + ++++ +I  L+F    G  +   L +L    FP   +    ++ ++   ++S  +G+ 
Sbjct: 148 FAVNVVVLIFILYFMLIGGRKMENYLYTL----FPFSDQNKDEVLNEINMIVKSNAIGIP 203

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNA 278
           ++A+ +G+V    Y++   P  +  G +T I  +IP  G  + +  ++ Y+ + G+  +A
Sbjct: 204 LLAVIQGIVAVIGYFIFQTPDPLLFGFLTCIATIIPIVGTALVWVPLAAYMALNGDWVHA 263

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
             L ++  + +  VD  +R  L      +  L T FG+V G+   G +G+  GP
Sbjct: 264 LGLAIYALLVITNVDNLIRFILQKKLADIHPLITVFGVVIGLSLFGFMGIIFGP 317


>gi|295676312|ref|YP_003604836.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1002]
 gi|295436155|gb|ADG15325.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1002]
          Length = 370

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 74/144 (51%), Gaps = 6/144 (4%)

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
           P    +I+ +    IR+   G+  IA  + L++G  + + G+P    L +   ++ ++  
Sbjct: 203 PGNGVQIADLCTATIRAVAQGVVGIAFIQMLLIGIGFVVKGIPGAGLLALAVLLLGIMQL 262

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV---DKTLRPFLVGGPIKLPFLPTF 313
            A +    V  ++++   +  A  +F   A+ +F+    D  L+P ++G  + +P     
Sbjct: 263 PATLITIPVIAFVIVTDGVSTANIIF---AVYVFVAGLADNVLKPLMLGRGVAVPMPVVL 319

Query: 314 FGLVGGVRTMGLLGLFIGPVLMAL 337
            G +GG+ T G++GLF+GPV++A+
Sbjct: 320 IGALGGMVTGGVIGLFVGPVMLAV 343


>gi|256838584|ref|ZP_05544094.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256739503|gb|EEU52827.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 337

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 85/174 (48%), Gaps = 8/174 (4%)

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV---IRSTFLGMT 219
           + ++++ +I  L+F    G  +   L +L    FP   +    ++ ++   ++S  +G+ 
Sbjct: 148 FAVNVVVLIFILYFMLIGGRKMENYLYTL----FPFSDQNKDEVLNEINMIVKSNAIGIP 203

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNA 278
           ++A+ +G+V    Y++   P  +  G +T I  +IP  G  + +  ++ Y+ + G+  +A
Sbjct: 204 LLAVIQGIVAVIGYFIFQTPDPLLFGFLTCIATIIPIVGTALVWVPLAAYMALNGDWVHA 263

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
             L ++  + +  VD  +R  L      +  L T FG+V G+   G +G+  GP
Sbjct: 264 LGLAIYALLVITNVDNLIRFILQKKLADIHPLITVFGVVIGLSLFGFMGIIFGP 317


>gi|149371682|ref|ZP_01891098.1| hypothetical protein SCB49_09765 [unidentified eubacterium SCB49]
 gi|149355309|gb|EDM43869.1| hypothetical protein SCB49_09765 [unidentified eubacterium SCB49]
          Length = 346

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 1/141 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           K I + +   +RS  LG+ ++AI +G++    + + GV       VI  + +MIP  G  
Sbjct: 186 KTIGKEINSTVRSNALGIPLVAIAQGIIALIGFLIFGVEDPFFWFVIVTVGSMIPFIGTF 245

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           +    V I  L  G+ F A  +  +G + +   D  +R +++     +  L T  G++ G
Sbjct: 246 VGILPVFILTLSSGSAFQAWGILAYGIVVVGSTDNIIRLYVLKRLDDVHPLITLIGVIVG 305

Query: 320 VRTMGLLGLFIGPVLMALIAV 340
           V   G +GL  GP+L++L  V
Sbjct: 306 VPLFGFIGLVFGPLLISLFIV 326


>gi|261402505|ref|YP_003246729.1| protein of unknown function UPF0118 [Methanocaldococcus vulcanius
           M7]
 gi|261369498|gb|ACX72247.1| protein of unknown function UPF0118 [Methanocaldococcus vulcanius
           M7]
          Length = 331

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 60/306 (19%), Positives = 135/306 (44%), Gaps = 40/306 (13%)

Query: 41  GFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN 100
            + + PIY+  + K   +      ++    + ++++P+  +  Y       +V       
Sbjct: 39  AYMALPIYNLLVKKLNRT------VSAALAIGIYLIPITLITIYAFSTFLNIV------- 85

Query: 101 QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA-SRFGMI 159
                    LS  P  +  ++ +   L++P   +I++   + T  ++ + ++A S+    
Sbjct: 86  ---------LSIDPNSI--NQYFLSVLNNPLLDRIITNDEMITKYVNELIKYAISQLSGK 134

Query: 160 FLDY---CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
            +D     +  I ++   F+F RDG+     + S      P  +K+  RI  + +  ++ 
Sbjct: 135 IIDVGYLAIKTILVLFITFYFLRDGYKFKDVVISFT----PENYKEKMRIYLQYLHDSYK 190

Query: 217 GMTIIAIGEGLVLG----SAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLI 271
            + I  +   +++       Y +AGV       +IT + A++P  G  + + A++IY  +
Sbjct: 191 NLFISCVSLSIIITILSYIGYLIAGVKYAELFAIITGVFALLPILGGWMVYIAIAIYFFL 250

Query: 272 KGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIKL-PFLPTFFGLVGGVRTMGLLGLF 329
             N   A  +F++G + L I  D  +RP++V   + + P L     L+  + ++GL G  
Sbjct: 251 THNYAKAIFIFIYGELFLSIAPDFVIRPYIVKKEVDIHPVLVVVAFLIAPL-SLGLSGFA 309

Query: 330 IGPVLM 335
           IGP+++
Sbjct: 310 IGPLVV 315


>gi|289192288|ref|YP_003458229.1| protein of unknown function UPF0118 [Methanocaldococcus sp.
           FS406-22]
 gi|288938738|gb|ADC69493.1| protein of unknown function UPF0118 [Methanocaldococcus sp.
           FS406-22]
          Length = 334

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 78/167 (46%), Gaps = 10/167 (5%)

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS--- 231
           F+F RDG     ++ +L     P  +K+  RI    +  ++  + I  +   +++     
Sbjct: 156 FYFLRDG----DKVKNLIISFVPDEYKEKMRIYLSYLHDSYKNLFISCVSLSIIITILSY 211

Query: 232 -AYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
             Y +  VP      +IT I A++P  G  + + +++IY  +  +   A  +F++G + L
Sbjct: 212 IGYLIVAVPYAELFAIITGIFALLPILGGWMVYISIAIYFFLMHDYTKAVFMFIYGELFL 271

Query: 290 FIV-DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
            I  D  +RP+LV   + +  +      +    ++GL G  IGP+++
Sbjct: 272 SIAPDFVIRPYLVKKEVDIHPVLVVIAFLMAPLSLGLSGFAIGPLVV 318


>gi|319651819|ref|ZP_08005944.1| hypothetical protein HMPREF1013_02556 [Bacillus sp. 2_A_57_CT2]
 gi|317396471|gb|EFV77184.1| hypothetical protein HMPREF1013_02556 [Bacillus sp. 2_A_57_CT2]
          Length = 373

 Score = 45.4 bits (106), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 97/222 (43%), Gaps = 20/222 (9%)

Query: 147 DFIPRFASRFGMI---FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           DFI  F  +   I   F +    +IF ++A FF  +D      +L  L   + P+  KK 
Sbjct: 156 DFIQAFFEKIPNILSWFPNAATVLIFSLLATFFISKDW----HRLSGLFSRILPSRAKKS 211

Query: 204 SRIVPKVIRSTFLGM-----TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-G 257
            R V   ++    G      T+++I   ++L     L  V   + + ++T ++ +IP  G
Sbjct: 212 GRTVFADLQKALFGFVKAQATLVSITTVIILAGLLILR-VDYAITIALVTGLVDIIPYLG 270

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
             + F    IY  I G +  A  L +   I L +  + + P ++   I L  L T   L 
Sbjct: 271 TGLVFVPWIIYEAIGGEMSRAIGLGILYIIVL-VQRQIMEPKILSSSIGLDPLATLIALF 329

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESI-----MAIKENKE 354
            G + +G LGL  GPV + LI  + K  +     + IK N+E
Sbjct: 330 VGFKLIGFLGLIAGPVTLVLITTLHKAGVFRDIWLFIKGNEE 371


>gi|293400449|ref|ZP_06644594.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305475|gb|EFE46719.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 363

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 66/328 (20%), Positives = 137/328 (41%), Gaps = 35/328 (10%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISK-KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F P+LS +++ F   PI      K   + S  L  I  ++++  F+  LL L Y   LE+
Sbjct: 45  FLPILSGVLLAFFLQPIIDRVQQKFSLKVSVMLVYIGLLAILGAFLAVLLPLLYQQALEL 104

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
            +L             VPRWL  + G +       +H     +L  L + +++   I  I
Sbjct: 105 AQL-------------VPRWLQQLEGFL------KQHHIAYDNLNTLKQNYMQEGYIIAI 145

Query: 150 PRFASRFGMIFLDYCLSII---FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
               S    +  DY ++ I   F+ I + F+ R    I   +  +       ++  +S I
Sbjct: 146 DSAKSVIDTL-TDYGIAYIIAFFISIDMDFWKRTAKKIVPNVTRVA-----TFYHTLSNI 199

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAV 265
           + + +  T L +  I +  G+VL     L   P+ +   +I A++ + P  GA +    +
Sbjct: 200 IYQYLAGTMLDLLFIIVSVGIVLS----LYRFPNALLYAMILALLNLFPYVGATLGLILI 255

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +    +  + +     F+  +I+  I    ++P +    + +  L TF  +       G+
Sbjct: 256 AAVAALHYDHYPWMMFFIVWSIQQ-IESNIIQPLIFNRTMNVRPLLTFVFIFISDAFFGV 314

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENK 353
           +G+ + P+  A+  ++++  + +   +K
Sbjct: 315 IGVILSPIFAAVAQIVFRSYLHSKTSDK 342


>gi|260102475|ref|ZP_05752712.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|260083712|gb|EEW67832.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
          Length = 399

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 86/189 (45%), Gaps = 14/189 (7%)

Query: 164 CLSIIFMIIA--------LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
            +SII MI+         LFF  +DG  +   +       + + + ++   +   + S  
Sbjct: 178 AVSIITMIVMTLLTAPFILFFMLKDGHQLRPYITKFAPEHWQSSFSQLLYDINYALASYI 237

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAV-SIYLLIKG 273
            G   +A   G++    Y + G+P  +AL ++   M +IP  G P++   V  I ++  G
Sbjct: 238 RGQITVAFWVGVMFVVGYMIIGLPYGLALAILAGFMNLIPYFGTPLALIPVFVIAIMTSG 297

Query: 274 N-IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
           + +     +FL   IE  I  + L P ++G  +++  + T   L+G     GL G+F G 
Sbjct: 298 SMVIKVLVVFL---IEQAIETRILSPLVMGNKMEMHPVTTILLLIGASSVWGLWGVFFGI 354

Query: 333 VLMALIAVI 341
            + A++ +I
Sbjct: 355 PIYAILKII 363


>gi|254422637|ref|ZP_05036355.1| conserved domain protein, putative [Synechococcus sp. PCC 7335]
 gi|196190126|gb|EDX85090.1| conserved domain protein, putative [Synechococcus sp. PCC 7335]
          Length = 365

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 63/292 (21%), Positives = 130/292 (44%), Gaps = 21/292 (7%)

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           +++++ + ++ +  L   G++    LV ++   N+    +P W+      + A + W   
Sbjct: 66  SLAILLVLLITVSVLGVLGVILAPPLVEQL---NELSGRLPSWIDSSTSQVTAFQNWAVS 122

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII---FMIIALFFFYRDGFS 183
           L+ P  L  LS T L+T     +   ++    +  D   S++     ++  F+    G  
Sbjct: 123 LNLPIDLSRLS-TQLQTRITTQVQTISASILGLLPDAISSVVDLGLTVVLTFYLLLHG-- 179

Query: 184 ISQQLDSLGEHLFPAYWKKISR-IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             +  D L + L P  W   +R ++ +  ++ FLG   +A+  G  +  A+ +  VP  +
Sbjct: 180 -ERLWDGLYQWL-PDSWNARARPLIKQNFQNYFLGQFTVAMLMGTAMTIAFVVIQVPFGL 237

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
             G+   +MA+ P G  +S T +S    +K        + +   I+  +V+  + P L+G
Sbjct: 238 LFGIAVGVMAIFPFGPALSITIISFLTALKSIWLGVRVVTVAAVIDQ-VVENAIAPQLIG 296

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G + L  +     L+ G +  G+LGL        ++AV    SI +I E+++
Sbjct: 297 GFVGLNPVWILVSLLLGTKIAGVLGL--------IVAVPVASSIKSIFEDQK 340


>gi|190889747|ref|YP_001976289.1| hypothetical protein RHECIAT_CH0000115 [Rhizobium etli CIAT 652]
 gi|190695026|gb|ACE89111.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
          Length = 385

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 15/99 (15%)

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWG---------------AIELFIVDKTLRP 298
           IP G P++F    + L+  G       + LW                AI + I+D  L+P
Sbjct: 251 IPAGGPLTFIVFVLCLMQLGPALVLLPVILWAWFSWPTSIALVFTVVAIPIMIIDNILKP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
            L+   +  P      G++GG  + GLLGLF+GPV++++
Sbjct: 311 ILMARGLSTPMPVILIGVIGGTLSQGLLGLFLGPVVLSV 349


>gi|323466958|gb|ADX70645.1| Permease [Lactobacillus helveticus H10]
          Length = 369

 Score = 45.1 bits (105), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 86/189 (45%), Gaps = 14/189 (7%)

Query: 164 CLSIIFMIIA--------LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
            +SII MI+         LFF  +DG  +   +       + + + ++   +   + S  
Sbjct: 148 AVSIITMIVMTLLTAPFILFFMLKDGHQLRPYITKFAPEHWQSSFSQLLYDINYALASYI 207

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAV-SIYLLIKG 273
            G   +A   G++    Y + G+P  +AL ++   M +IP  G P++   V  I ++  G
Sbjct: 208 RGQITVAFWVGVMFVVGYMIIGLPYGLALAILAGFMNLIPYFGTPLALIPVFVIAIMTSG 267

Query: 274 N-IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
           + +     +FL   IE  I  + L P ++G  +++  + T   L+G     GL G+F G 
Sbjct: 268 SMVIKVLVVFL---IEQAIETRILSPLVMGNKMEMHPVTTILLLIGASSVWGLWGVFFGI 324

Query: 333 VLMALIAVI 341
            + A++ +I
Sbjct: 325 PIYAILKII 333


>gi|94310649|ref|YP_583859.1| hypothetical protein Rmet_1709 [Cupriavidus metallidurans CH34]
 gi|93354501|gb|ABF08590.1| hypothetical protein, putative membrane protein (permease)
           [Cupriavidus metallidurans CH34]
          Length = 388

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 84/177 (47%), Gaps = 17/177 (9%)

Query: 169 FMIIALFFFY-----RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
            MI  +F  Y     R    I+ ++        P    +++ +    +R+   G+  IA 
Sbjct: 176 LMIAGIFMAYGELGTRSAIQIASRISG------PERGPRLTVLCTATVRAVAQGVVGIAF 229

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
            + L++G A+ + GVP    L +   ++ ++   A +    V I+++    +     +F 
Sbjct: 230 IQMLLIGVAFVMKGVPGAGLLALAVLLLGIMQLPATLITIPVIIFVIATEGVSGMNIVF- 288

Query: 284 WGAIELFIV---DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
             A+ +FI    D  L+P L+G  + +P      G +GG+ + G++GLF+GPV++A+
Sbjct: 289 --AVYVFIAGLADNVLKPMLLGRGVDVPMPVVLIGALGGMVSGGVIGLFVGPVVLAV 343


>gi|209809760|ref|YP_002265299.1| membrane protein [Aliivibrio salmonicida LFI1238]
 gi|208011323|emb|CAQ81774.1| membrane protein [Aliivibrio salmonicida LFI1238]
          Length = 355

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 16/169 (9%)

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           + L   + K ++ +    +RS   G+  +A+ + ++ G    L GVP+     ++  ++A
Sbjct: 194 DRLTGEHGKALTALSRTTVRSVVQGVIGVAVIQAIMAGLGMALVGVPALGLWVLLVLLVA 253

Query: 253 MIP-----GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           +I         P+ F   S+       IF   CL +  +      D  L+P L+     +
Sbjct: 254 IIQLPPILALLPVIFYVFSVDTTTTAVIFLIWCLLIGSS------DAILKPILLSRGSDI 307

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMAL---IAVIWKESIMAIKENK 353
           P +    G +GG+   G++GLF+G V+++L   + ++W E+    KENK
Sbjct: 308 PMIVILLGALGGMAMSGIVGLFVGAVVLSLTYRLFMVWLEN--EDKENK 354


>gi|328461853|gb|EGF34075.1| putative permease [Lactobacillus helveticus MTCC 5463]
          Length = 350

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 86/189 (45%), Gaps = 14/189 (7%)

Query: 164 CLSIIFMIIA--------LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
            +SII MI+         LFF  +DG  +   +       + + + ++   +   + S  
Sbjct: 129 AVSIITMIVMTLLTAPFILFFMLKDGHQLRPYITKFAPEHWQSSFSQLLYDINYALASYI 188

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAV-SIYLLIKG 273
            G   +A   G++    Y + G+P  +AL ++   M +IP  G P++   V  I ++  G
Sbjct: 189 RGQITVAFWVGVMFVVGYMIIGLPYGLALAILAGFMNLIPYFGTPLALIPVFVIAIMTSG 248

Query: 274 N-IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
           + I     +FL   IE  I  + L P ++G  +++  + T   L+G     GL G+F G 
Sbjct: 249 SMIIKVLVVFL---IEQAIETRILSPLVMGNKMEMHPVTTILLLIGASSVWGLWGVFFGI 305

Query: 333 VLMALIAVI 341
            + A++ +I
Sbjct: 306 PIYAILKII 314


>gi|220908099|ref|YP_002483410.1| hypothetical protein Cyan7425_2702 [Cyanothece sp. PCC 7425]
 gi|219864710|gb|ACL45049.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7425]
          Length = 358

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 14/163 (8%)

Query: 200 WKKISRIVPKVIRSTF------------LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           W+ I R+VP+  R  F             G  +I+   GL     + +  +P  + L ++
Sbjct: 195 WQFILRLVPQAQRDRFDRSVHRSFQGFIRGQLLISFLLGLATYIVFVIFRLPFALVLSMV 254

Query: 248 TAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A+  +IPG GA +  T   + +L++   + A  +     I   + D  L P ++   ++
Sbjct: 255 VAVFDLIPGIGATLGVTLACLIVLLQSGWWVALQVLAICVILQQLQDNLLAPRIMQSTVR 314

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMA 348
           L  L  FF L+ G +  GLLG+F+  PV  A+++ +  E + A
Sbjct: 315 LHPLVVFFALLVGTQIAGLLGVFLAVPVAGAIVSFLQIEELQA 357


>gi|161507183|ref|YP_001577137.1| putative permease [Lactobacillus helveticus DPC 4571]
 gi|160348172|gb|ABX26846.1| putative permease [Lactobacillus helveticus DPC 4571]
          Length = 399

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 87/193 (45%), Gaps = 22/193 (11%)

Query: 164 CLSIIFMIIA--------LFFFYRDGFSISQQLDSLGEHLFPAYWK----KISRIVPKVI 211
            +SII MI+         LFF  +DG     QL        P +W+    ++   +   +
Sbjct: 178 AVSIITMIVMTLLTAPFILFFMLKDG----HQLRPYITKFAPEHWQSGFSQLLYDINYAL 233

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAV-SIYL 269
            S   G   +A   G++    Y + G+P  +AL ++   M +IP  G P++   V  I +
Sbjct: 234 ASYIRGQITVAFWVGVMFVVGYMIIGLPYGLALAILAGFMNLIPYFGTPLALIPVFVIAI 293

Query: 270 LIKGN-IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           +  G+ +     +FL   IE  I  + L P ++G  +++  + T   L+G     GL G+
Sbjct: 294 MTSGSMVIKVLVVFL---IEQAIETRILSPLVMGNKMEMHPVTTILLLIGASSVWGLWGV 350

Query: 329 FIGPVLMALIAVI 341
           F G  + A++ +I
Sbjct: 351 FFGIPIYAILKII 363


>gi|294651082|ref|ZP_06728419.1| membrane lipofamily protein [Acinetobacter haemolyticus ATCC 19194]
 gi|292823031|gb|EFF81897.1| membrane lipofamily protein [Acinetobacter haemolyticus ATCC 19194]
          Length = 398

 Score = 44.7 bits (104), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 115/251 (45%), Gaps = 21/251 (8%)

Query: 118 WASE---LWTKHLSHPQSLKILSETFLKTN-GIDFIPRFASRF---GMIFLDYCLSIIFM 170
           W SE   L    +   Q  K++ E +++TN   D I  FA R    G+ F+     II +
Sbjct: 107 WMSETFDLVPMEIDTDQISKVVME-YVQTNYSSDSIQTFALRLAQSGLNFIQIGGIIILI 165

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
            I  F+F  D   + Q L  L    + A   KI R    V+ +   G  ++ +  G++  
Sbjct: 166 PIISFYFLLDWERMLQSLRRLIPRPYEASTLKIIRECHSVLGAFVKGQFLVMLLLGVIYA 225

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
               L G+   + +G++  + ++IP  G  +   A  I  L +  + + T L L GA+  
Sbjct: 226 VGLQLIGLEVGLIIGMVAGLASIIPYLGFAVGIIAAVIATLFQFGL-DWTQLLLVGAV-- 282

Query: 290 FIVDKT-----LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           F+V +      L+PFL+G  I L  +   F ++ G +  G LG+ I   + A+I V+ + 
Sbjct: 283 FLVGQMVEGYILQPFLLGDKIGLSPVAVVFAVLAGAQLAGFLGMLIALPVAAVIVVLLRH 342

Query: 345 SIMAIKENKEK 355
           +    ++N EK
Sbjct: 343 A----RDNYEK 349


>gi|153833033|ref|ZP_01985700.1| transporter, PerM family [Vibrio harveyi HY01]
 gi|148870754|gb|EDL69660.1| transporter, PerM family [Vibrio harveyi HY01]
          Length = 379

 Score = 44.7 bits (104), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 8/139 (5%)

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           ++  +    IR   +G+  IA    +  G    L+GVP+     +I  + A++    P++
Sbjct: 209 ELHELTTATIRQVAIGIIGIAFLTAMTFGGVVALSGVPAAALFTLIALVFAIVQ--LPVT 266

Query: 262 FTA-VSIYLLIKGN---IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
             A V++ +L  G+   I N+    L  A  L  +D  L+P ++G  +++P      G V
Sbjct: 267 IIAIVAVAILWSGDTGTIHNSIFTVLLIAASL--IDNFLKPLILGRGLEVPMPIVLIGAV 324

Query: 318 GGVRTMGLLGLFIGPVLMA 336
           GG+ + G+LG+FIG   +A
Sbjct: 325 GGMMSGGILGMFIGAAFLA 343


>gi|78486220|ref|YP_392145.1| hypothetical protein Tcr_1881 [Thiomicrospira crunogena XCL-2]
 gi|78364506|gb|ABB42471.1| Conserved hypothetical protein with DUF20 [Thiomicrospira crunogena
           XCL-2]
          Length = 367

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 80/387 (20%), Positives = 158/387 (40%), Gaps = 77/387 (19%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           MR      +G +  +++  ++  L+    F   +L A+I+   ++ +Y   + K ++S  
Sbjct: 1   MRSNAPYEEGFLIILLLTAVVGLLWLFSPFLEALLFAMILATATYSLYLKVLPKVKQSPN 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           + + + +V V    I P+ +L     L++  +VS+            +WLS         
Sbjct: 61  YASAVMSVFVFVTVIAPVTYLLLEVGLQVGHIVSQA----------EQWLSQ-------- 102

Query: 121 ELWTKHLSHPQSLKILSET------FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                    P+SL  L++       F ++  ++ I +       +      +I+F++  +
Sbjct: 103 -------QTPESLSQLNQNLVEVIPFPESTQMELIRQVKDNSDKLITFAQDTIMFLVKGI 155

Query: 175 F------------------FFYRDGFSISQQLDSLG--EHLFPAYWKKISRIVPKVIRST 214
           F                  FFYRDG  IS  L  L   E+ +          +  ++  +
Sbjct: 156 FGNTTSFITFIFLAVFALFFFYRDGHRISHHLKILSPLENYYDTMIMTRFSNLSTILLLS 215

Query: 215 FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKG 273
            LG   +A+ +G V     W  G+P  + +G+  AI + IP  GA + +   ++ ++ +G
Sbjct: 216 VLG---VALMQGAVFAIVAWFLGMPG-LFIGMAIAITSFIPIVGAALIWIPFALIMVAQG 271

Query: 274 N-IFNATCLFLWGAIELFIVDKTLRPFLV-------GGPIK---------LPFLPTFFGL 316
           + +     +F    +  F +D  +RP L+       GG  +         +  L TF GL
Sbjct: 272 DYVAAGVVVFFGAVVNGFFIDNVVRPMLIQKISLSLGGASEELAVANHTLITVLSTFAGL 331

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +      G++GLF GPV+ A+   I+ 
Sbjct: 332 IH----FGMIGLFFGPVIAAMAITIFD 354


>gi|58336979|ref|YP_193564.1| permease [Lactobacillus acidophilus NCFM]
 gi|227903538|ref|ZP_04021343.1| permease [Lactobacillus acidophilus ATCC 4796]
 gi|58254296|gb|AAV42533.1| putative permease [Lactobacillus acidophilus NCFM]
 gi|227868425|gb|EEJ75846.1| permease [Lactobacillus acidophilus ATCC 4796]
          Length = 395

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 12/188 (6%)

Query: 164 CLSIIFMIIA--------LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
            +SII MI+         LFF  +DG  +   +       +   + K+   +   + S  
Sbjct: 177 AVSIITMIVMTLLTAPFILFFMLKDGHQLRPYITKFVPETWQQSFSKLLYDINYAVASYI 236

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAV-SIYLLIKG 273
            G   +A   G++    Y + G+P  +AL ++   M +IP  G P++   V  I ++  G
Sbjct: 237 RGQITVAFWVGVMFTIGYIIIGLPYGLALAILAGFMNLIPYFGTPLALIPVIVISIMTSG 296

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
           ++     +    AIE  I  + L P ++G  +++  + T   L+G     GL G+  G  
Sbjct: 297 SMLVKVLIVF--AIEQTIETRILSPLVMGNKMQMHPVTTILLLIGASSVWGLWGVIFGIP 354

Query: 334 LMALIAVI 341
           + A++ +I
Sbjct: 355 IYAVLKII 362


>gi|269962623|ref|ZP_06176969.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832660|gb|EEZ86773.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 382

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 8/143 (5%)

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
           A   ++  +    IR   +G+  IA    +  G+   L+GVP      +I  I A++   
Sbjct: 205 ARGTELHELTTATIRQVAVGIIGIAFLTAMAFGAVVALSGVPGAALFTLIALIFAIVQ-- 262

Query: 258 APISFTA-VSIYLLIKGN---IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
            P++  A V+I LL  G+   I N     L  A  L  +D  L+P ++G  + +P     
Sbjct: 263 LPVTLIALVTIGLLWSGDSGTIHNVIFTVLLIAASL--IDNFLKPLILGRGLDVPMPIVL 320

Query: 314 FGLVGGVRTMGLLGLFIGPVLMA 336
            G +GG+ + G+LG+FIG   +A
Sbjct: 321 IGAIGGMMSGGILGMFIGAAFLA 343


>gi|251797637|ref|YP_003012368.1| hypothetical protein Pjdr2_3650 [Paenibacillus sp. JDR-2]
 gi|247545263|gb|ACT02282.1| protein of unknown function UPF0118 [Paenibacillus sp. JDR-2]
          Length = 346

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 10/131 (7%)

Query: 234 WLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI--YLL--IKGNIFNATCLFLWGAIE 288
           W+ G P   AL ++  ++++IP  G  +SF  + I  Y L  IK  I+    + L  A+E
Sbjct: 218 WIMGFPYLFALTIMVFLLSLIPVAGVVVSFVPIGIIGYQLGGIKTVIWVIVLVLLIHALE 277

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIM 347
            +     L P L      LP   TFF L+     MG+ GL IG P+ M ++ V+  E   
Sbjct: 278 TYF----LNPRLYSHKTNLPMFYTFFILILSEHYMGIWGLLIGIPIFMFMLDVLKVEQAD 333

Query: 348 AIKENKEKISS 358
           +++E  + + S
Sbjct: 334 SLEEQAKPVKS 344


>gi|298675240|ref|YP_003726990.1| hypothetical protein Metev_1335 [Methanohalobium evestigatum
           Z-7303]
 gi|298288228|gb|ADI74194.1| protein of unknown function UPF0118 [Methanohalobium evestigatum
           Z-7303]
          Length = 356

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 68/356 (19%), Positives = 159/356 (44%), Gaps = 25/356 (7%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +++ + ++++Y  K F   V+ ++ + +  +P+YS ++ K  +S    + I+ +S + + 
Sbjct: 14  LLLLVSIIAIYLTKEFVPVVVFSIFLTYVLYPVYS-YLEKVTKSERIASSISVLSALFIL 72

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD-IPGGMWASELWTKHLSHPQSL 133
            + +  L    + E+ +L++      +  I + + L D I    + S +   ++S+  S 
Sbjct: 73  GLCIYLLLSSAVREISKLITSPDQIREPIIALEKELLDFISSTDYLSFIAESYISNGLSQ 132

Query: 134 KILS-----ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ- 187
            +++       ++KT    F+  F +   +  + + L+++F     ++F  D   I  Q 
Sbjct: 133 PVVTVINWVSPYVKT----FLTSFITNTPLYLISFVLTLLFT----YYFLIDARRIRAQI 184

Query: 188 LDSLGE---HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           +D + E   H+   +  +++ I   +    F    + +   G++    ++L G+P  V L
Sbjct: 185 MDVIPEKNKHVVSLFINELNVIYYNLFNIFF----VTSFLTGVIASVGFFLLGIPYPVIL 240

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVG 302
           G+   ++ ++P  GAP+ +    IY LI  +   A  + L+G   L I  D  +RP L  
Sbjct: 241 GMAVFLLTLLPLVGAPVIYIPFFIYYLIIQDYATAIIILLFGIFILSIFPDSFIRPRLAK 300

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
               +  + T       +  +G  G  +GP++   +   ++  I    +  E+  S
Sbjct: 301 NKASIHPVITLLSFTAPIFVIGFTGFIVGPLVYGFLLAFYRTKIKIKYQTDEEPES 356


>gi|226952105|ref|ZP_03822569.1| PerM family permease [Acinetobacter sp. ATCC 27244]
 gi|226837161|gb|EEH69544.1| PerM family permease [Acinetobacter sp. ATCC 27244]
          Length = 398

 Score = 44.3 bits (103), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 115/251 (45%), Gaps = 21/251 (8%)

Query: 118 WASE---LWTKHLSHPQSLKILSETFLKTN-GIDFIPRFASRF---GMIFLDYCLSIIFM 170
           W SE   L    +   Q  K++ E +++TN   D I  FA R    G+ F+     II +
Sbjct: 107 WMSETFDLVPMEIDTDQISKVVME-YVQTNYSSDSIQTFALRLAQSGLNFIQIGGIIILI 165

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
            I  F+F  D   + Q L  L    + A   KI R    V+ +   G  ++ +  G++  
Sbjct: 166 PIISFYFLLDWERMLQSLRRLIPRPYEASTLKIIRECHSVLGAFVKGQFLVMLLLGVIYA 225

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
               L G+   + +G++  + ++IP  G  +   A  +  L +  + + T L L GA+  
Sbjct: 226 VGLQLIGLEVGLIIGMVAGLASIIPYLGFAVGIIAAVVATLFQFGL-DWTQLLLVGAV-- 282

Query: 290 FIVDKT-----LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           F+V +      L+PFL+G  I L  +   F ++ G +  G LG+ I   + A+I V+ + 
Sbjct: 283 FLVGQMVEGYILQPFLLGDKIGLSPVAVVFAVLAGAQLAGFLGMLIALPVAAVIVVLLRH 342

Query: 345 SIMAIKENKEK 355
           +    ++N EK
Sbjct: 343 A----RDNYEK 349


>gi|219853173|ref|YP_002467605.1| protein of unknown function UPF0118 [Methanosphaerula palustris
           E1-9c]
 gi|219547432|gb|ACL17882.1| protein of unknown function UPF0118 [Methanosphaerula palustris
           E1-9c]
          Length = 363

 Score = 44.3 bits (103), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 35/67 (52%)

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           D  +RP L+G  +++     F G  GG+  MG +G  +GP+LMAL+   +K +I      
Sbjct: 293 DVVMRPLLMGQKMQVHPAILFIGFFGGIAVMGAIGFVLGPLLMALLVAAYKIAIEEFGAG 352

Query: 353 KEKISSN 359
           +E    N
Sbjct: 353 REGDKDN 359


>gi|312883995|ref|ZP_07743712.1| permease [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368453|gb|EFP95988.1| permease [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 361

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 86/173 (49%), Gaps = 14/173 (8%)

Query: 193 EHLFP---AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            H+ P   +   K+   V +V +S  +G  + AI +GL  G    +AG P+ +  G +  
Sbjct: 192 RHILPLSRSQEDKLLDEVEQVAKSAVMGSFLTAIAQGLAGGIGMAIAGFPA-LFWGTMMG 250

Query: 250 IMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV---DKTLRPFLVGGPI 305
             + IP  G  + +   S+YLL+ G       +FL G   +F+V   D  LRPFL+ G  
Sbjct: 251 FASFIPVIGTALIWIPASLYLLLTGE--TGLAIFLAG-FSVFVVGSIDNLLRPFLMQGNG 307

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV---IWKESIMAIKENKEK 355
            +  L  FF L+GG+   GL+GL  GP++ A+  V   I++E      + ++K
Sbjct: 308 GMNTLMIFFSLLGGLHLFGLIGLIYGPIIFAVTVVLFHIYEEEFQGFLDQQDK 360


>gi|262278141|ref|ZP_06055926.1| permease [Acinetobacter calcoaceticus RUH2202]
 gi|262258492|gb|EEY77225.1| permease [Acinetobacter calcoaceticus RUH2202]
          Length = 397

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 119/259 (45%), Gaps = 37/259 (14%)

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
            + A E+ T+ +S  +++    +T    + I  +    ++ G+ F+    +++ + I  F
Sbjct: 113 NLQAMEIDTEQMS--KAVMEYVQTNYSADSIQSVLLKLAQSGLNFIQIGGTVVLIPIIAF 170

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKI----SRIVPKVIRSTFL-----------GMTI 220
           +F  D   + Q L  L    + A   +I      ++   ++  FL           G+ +
Sbjct: 171 YFLLDWDRMLQNLRRLIPRRYEANTLQIVGECHSVLGAFVKGQFLVMLLLGIVYAVGLQL 230

Query: 221 IAIGEGLVLGSAYWLAGVPSHV--ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA 278
           I +  GL++G    LA +  ++  A+G+I A++A +       F    ++LL+ G +F  
Sbjct: 231 IGLEVGLIIGMVAGLASIIPYLGFAVGIIAAVIASL-----FQFGLDWMHLLLVGVVF-- 283

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
               +  AIE +I    L+PFL+G  I L  +   F ++ G +  G LG+ I   + A+I
Sbjct: 284 ---MIGQAIEGYI----LQPFLLGDKIGLSPVAVVFAVLAGAQLAGFLGMLIALPVAAVI 336

Query: 339 AVIWKESIMAIKENKEKIS 357
            V+ K     +++N E+ S
Sbjct: 337 VVLLKH----LRDNYERSS 351


>gi|256810121|ref|YP_003127490.1| protein of unknown function UPF0118 [Methanocaldococcus fervens
           AG86]
 gi|256793321|gb|ACV23990.1| protein of unknown function UPF0118 [Methanocaldococcus fervens
           AG86]
          Length = 333

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 82/177 (46%), Gaps = 10/177 (5%)

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
           + +I +I   F+F ++G      + S      P  +K+  +I  + +  ++  + I  + 
Sbjct: 145 IKVIMVIFITFYFLKEGDKAENVIISFT----PNEYKEKMKIYLEYLHDSYKNLFISCVS 200

Query: 225 EGLVLGS----AYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNAT 279
             +++       Y + GVP      V+T I A++P  G  + +  ++IY  I  +   A 
Sbjct: 201 LSIIITILSYIGYLIVGVPYAELFAVVTGIFALLPILGGWMVYIPIAIYYFITHDYTKAI 260

Query: 280 CLFLWGAIELFIV-DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
            LF++G + L I  D  +RP+LV   + +  +      +    ++GL G  IGP+++
Sbjct: 261 FLFIYGELMLSIAPDFVIRPYLVKKEVDIHPVLVIVAFLMAPLSLGLSGFAIGPLVV 317


>gi|86130132|ref|ZP_01048732.1| conserved hypothetical protein [Dokdonia donghaensis MED134]
 gi|85818807|gb|EAQ39966.1| conserved hypothetical protein [Dokdonia donghaensis MED134]
          Length = 345

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 3/160 (1%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAP 259
           K I +   ++++S  +G+ ++A+ +GLV    + + GV        I  + +MIP  G  
Sbjct: 184 KLIGKDSQELVKSNAIGIPLVALLQGLVALIGFLILGVEDPFFWFAIVTVGSMIPFVGTA 243

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           +    V I L   G+I+ A  + ++G + +   D   R  +      +  L T  G++ G
Sbjct: 244 LGIVPVCIILYAAGDIWQAIVMIIYGTVVVGSTDNLFRLVIQKRLADVHPLITIIGVIVG 303

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           V   G +GL  GP+++++  +I K  I   +  KEK S  
Sbjct: 304 VPLFGFIGLIFGPIVVSIFLLIVK--IYKQEYGKEKPSEQ 341


>gi|218290422|ref|ZP_03494552.1| sporulation integral membrane protein YtvI [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239550|gb|EED06744.1| sporulation integral membrane protein YtvI [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 375

 Score = 43.9 bits (102), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 21/123 (17%)

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT---AIMAMIPGGAPISFTAVSIYLLIK 272
           +GM ++     ++LG  + LAG+   V   ++T   AI+A+I G   ++   +++ ++I 
Sbjct: 238 IGMFVLGFPYAILLGILFGLAGLVPIVGSAILTVPWAIVALITGHVAVAIKVLALQVVIS 297

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
                             I+  T+ P ++   + L  L T FGL  G + MG +GLFIGP
Sbjct: 298 ------------------IIRHTVEPKILADSVGLDTLTTLFGLYVGFKVMGFIGLFIGP 339

Query: 333 VLM 335
           +L+
Sbjct: 340 ILL 342


>gi|71279220|ref|YP_271255.1| hypothetical protein CPS_4608 [Colwellia psychrerythraea 34H]
 gi|71144960|gb|AAZ25433.1| putative membrane protein [Colwellia psychrerythraea 34H]
          Length = 370

 Score = 43.9 bits (102), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 80/174 (45%), Gaps = 8/174 (4%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
           I+ +IIA+ F  +    + Q L  L   L   +  +        IRS   G+  +A+ + 
Sbjct: 175 IVSLIIAVVFMAKSA-PLHQGLSKLMRRLMNDFGDRTISTTIATIRSVATGVLGVAVIQS 233

Query: 227 LVLGSAYWLAGVPSHV--ALGVITAIMAMIPGGAPISFTA-VSIYLLIKGNIFNATCLFL 283
           L+ G    +A +P     A+ V+   +A +P   PI     ++ Y     +   A   FL
Sbjct: 234 LMSGVGLMIADIPGAGIWAIAVLILAIAQLP---PILILGPIAAYYFSVADTTPAIA-FL 289

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
             +I +   D  L+P  +G  + +P L    G +GG+   G++GLF+G V++AL
Sbjct: 290 IFSIIVSASDAFLKPLFLGRGMSIPMLVILLGAIGGMLLSGIIGLFVGAVVLAL 343


>gi|331677560|ref|ZP_08378235.1| putative permease [Escherichia coli H591]
 gi|331074020|gb|EGI45340.1| putative permease [Escherichia coli H591]
          Length = 123

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
           G  P+   A+ I+L   G+    T L +W  + +  +D  +RP L+     LP +    G
Sbjct: 10  GPLPVLIPAI-IWLYWTGDTTWGTVLLVWSGV-VGTLDNVIRPMLIRMGADLPLILILSG 67

Query: 316 LVGGVRTMGLLGLFIGPVLMAL 337
           ++GG+   G++GLFIGPVL+A+
Sbjct: 68  VIGGLIAFGMIGLFIGPVLLAV 89


>gi|116333210|ref|YP_794737.1| permease [Lactobacillus brevis ATCC 367]
 gi|116098557|gb|ABJ63706.1| Predicted permease [Lactobacillus brevis ATCC 367]
          Length = 347

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 98/222 (44%), Gaps = 21/222 (9%)

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA------LFF 176
           W K+L+   S+    +T L T+GI  + RF+S    + L +  S IF +        +  
Sbjct: 116 WIKNLTQNASVINNGKT-LFTSGIVKLSRFSSGVETVILAFFFSFIFNLTKTQLRHFVHA 174

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
           F +  FS  +    +GE +      K   I   VI +  +  +I  +   +V+G   WL 
Sbjct: 175 FTKSRFS--RLFVPMGELIL-----KFVTIFGTVIETQLMICSINTVL--MVIG--LWLV 223

Query: 237 GVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDK 294
           G+PS + LG++   + +IP  G  IS   ++I   I G I   A  L L   I LF    
Sbjct: 224 GMPSLLILGIMVFFLGLIPVAGVLISLIPLTIIAFISGGILRLAAVLVLVILIHLF-ESY 282

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            L P L+     LP   TF  L+   R  G  GL +G  L+A
Sbjct: 283 FLHPRLMANATNLPIFVTFITLIVSERLFGAWGLIVGVPLVA 324


>gi|14521184|ref|NP_126659.1| hypothetical protein PAB0658 [Pyrococcus abyssi GE5]
 gi|5458402|emb|CAB49890.1| Predicted permease [Pyrococcus abyssi GE5]
          Length = 329

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 93/189 (49%), Gaps = 12/189 (6%)

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
            Y L ++  +  ++FF     +I + L    E L     K+ +  +  +IR+  L    +
Sbjct: 135 KYLLQVVVYLTFVYFFLVKRKAIEELLSFRDERLVRIV-KRGNVTLQALIRAWLL----L 189

Query: 222 AIGEGLVLGS---AYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIF 276
            I +G+++     A+ ++ VP+ +  G++T + + +P   G  I + A + YL+  G+I 
Sbjct: 190 NIAKGILMTVGFLAFKVSNVPTAILAGILTVLFSFVPLFEGWMI-WLAGAFYLIKNGDIL 248

Query: 277 NATCLFLWGAIELF-IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
               L ++G + +  + D T+RP LV        +    G++GG   +GL GL IGP+++
Sbjct: 249 TGLGLAIYGFVLVSPLPDFTIRPKLVAREANFDEVLVLIGMIGGTWGLGLKGLIIGPIVL 308

Query: 336 ALIAVIWKE 344
            +   + +E
Sbjct: 309 NVAIEMLRE 317


>gi|309389223|gb|ADO77103.1| sporulation integral membrane protein YtvI [Halanaerobium
           praevalens DSM 2228]
          Length = 353

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 87/194 (44%), Gaps = 15/194 (7%)

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGE---HLFP-AYWKKISRIVPKVIRST---FLGMTI 220
           +FMI  LF  +   F IS+  D + E   ++FP A   KI+ +  ++  S       M I
Sbjct: 165 VFMI--LFIAFIGTFFISRDRDKIKEFLVNIFPLAIQPKIANVFTQLNSSAVGYIRAMLI 222

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNAT 279
           +    G+V G    L G    + +GV  A++ +IP  G  + F    I  +I GN   A 
Sbjct: 223 LITISGIVAGIGVKLLGNQYALIVGVTAAVLDLIPIIGPALLFYPWIIVSIIFGNFSQAF 282

Query: 280 CLFLWGAIELFI--VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
            LF+   + LF+  +       ++G  + L  L T   L  G R +G +G  +GP  + L
Sbjct: 283 SLFI---LHLFLAGIRSASEGKIMGKSLGLHPLATMIALFSGYRILGAIGFVVGPTFLVL 339

Query: 338 IAVIWKESIMAIKE 351
           I  I    ++ IK 
Sbjct: 340 IKAIVDSDLIDIKN 353


>gi|291276358|ref|YP_003516130.1| acid membrane antigen A [Helicobacter mustelae 12198]
 gi|290963552|emb|CBG39384.1| acid membrane antigen A [Helicobacter mustelae 12198]
          Length = 345

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 80/163 (49%), Gaps = 20/163 (12%)

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
           G H+F    +++S ++  V+ ++ + M +  +  G+ L   ++       + LG+   I 
Sbjct: 184 GHHIF----EEVSSVLKIVLLTSLVNMILQGLAFGIFLSFFHY----KHALILGICYGIA 235

Query: 252 AMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPF--------L 300
           +++P  GGA + +  V+ + +  G+  +A  + L+  I + F++D  ++P         L
Sbjct: 236 SLVPVVGGALV-WIPVAGFEIFLGHFQHAIIISLYALIFIAFVIDNVIKPIIITFFNHKL 294

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +  P+K+  L  FF +  G  T G  G+ +GP + A    +W+
Sbjct: 295 LSKPLKINELIIFFAIFAGFSTFGFWGILLGPAITAFFIALWR 337


>gi|76801133|ref|YP_326141.1| permease [Natronomonas pharaonis DSM 2160]
 gi|76556998|emb|CAI48572.1| homolog to predicted permease [Natronomonas pharaonis DSM 2160]
          Length = 331

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 104/238 (43%), Gaps = 14/238 (5%)

Query: 130 PQSLKILSETFLKTNGI-DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           P  L + +  F+ T  + D +   A     I +      IF+ + L  F    + +  + 
Sbjct: 98  PDELPVEAFGFVVTIDVADLVDTTADTLQSIAISLAADAIFLALQLLMFALVLYGLLLRP 157

Query: 189 DSLGEHLF---PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS----AYWLAGVPSH 241
           +++G   F   P+ +  I   + + I  T   + +I     ++        ++L G P  
Sbjct: 158 NAVGRAAFRVTPSPYHDILVALHRRIAGTLYALYVIQAATAVITFPLALIVFYLLGYPDV 217

Query: 242 VALGVITAIMAMIPGGAPISFTA-VSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPF 299
             L V+ A++  IP   P    A ++ + ++ G    A  + + G + +  + D  +RP 
Sbjct: 218 FVLAVLAALLQFIPIVGPGMLAAGLAGHDVLVGMPHRAVGVIILGPLFVGLLPDLLVRPR 277

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           L     KLP    F G VGGV T+G++G+  GP+++AL+     E++  + E  +  +
Sbjct: 278 LAASKAKLPASLYFVGFVGGVLTVGVIGIIAGPLVVALLV----EAVNLLSERNQSAA 331


>gi|15639542|ref|NP_218992.1| hypothetical protein TP0553 [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025781|ref|YP_001933553.1| hypothetical protein TPASS_0553 [Treponema pallidum subsp. pallidum
           SS14]
 gi|8928462|sp|O83564|Y553_TREPA RecName: Full=UPF0118 membrane protein TP_0553
 gi|3322847|gb|AAC26557.1| conserved hypothetical integral membrane protein [Treponema
           pallidum subsp. pallidum str. Nichols]
 gi|189018356|gb|ACD70974.1| hypothetical integral membrane protein [Treponema pallidum subsp.
           pallidum SS14]
 gi|291059930|gb|ADD72665.1| membrane protein [Treponema pallidum subsp. pallidum str. Chicago]
 gi|311359268|gb|ADP94169.1| conserved hypothetical membrane protein [Treponema pallidum subsp.
           pertenue]
 gi|311705159|gb|ADQ01048.1| conserved hypothetical membrane protein [Treponema pallidum subsp.
           pertenue]
 gi|311705167|gb|ADQ01055.1| conserved hypothetical membrane protein [Treponema pallidum subsp.
           pertenue str. Gauthier]
 gi|313505080|gb|ADR64248.1| conserved hypothetical membrane protein [Treponema pallidum]
 gi|313505088|gb|ADR64255.1| conserved hypothetical membrane protein [Treponema pallidum subsp.
           pallidum str. Mexico A]
 gi|313505096|gb|ADR64262.1| conserved hypothetical membrane protein [Treponema pallidum subsp.
           pallidum]
          Length = 403

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 29/167 (17%)

Query: 192 GEHL-------FPAYWKKISRIVPKVIRST---FLGMTIIAIGEGLVLGSAYWLAGVPSH 241
           GEHL        P   +  ++++ K   +T   F G+  IA  +  V    Y +  V   
Sbjct: 209 GEHLSCLLIAALPLRKRASAQLLEKCKEATRHLFKGLFSIAFYQTCVAFVFYGIFRVEGP 268

Query: 242 VALGVITAIMAMIP----------GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
           +AL ++T   + +P           G  I FT+      ++G +F    LF+ G+  + I
Sbjct: 269 MALAMLTFFASFLPLVGCACVWLPVGISIGFTSG----WMRGTLF----LFVAGS-SITI 319

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           +D  LRP L+   +++  L  FF ++GGV+T G  G+ +GP+L+ L+
Sbjct: 320 IDSFLRPLLLQNKMRIHPLLIFFSMLGGVQTFGFNGMVLGPILVILL 366


>gi|293609875|ref|ZP_06692177.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828327|gb|EFF86690.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325123103|gb|ADY82626.1| phosphoribosylaminoimidazole-succinocarboxamide (SAICAR) synthetase
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 397

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 117/254 (46%), Gaps = 37/254 (14%)

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E+ T+ LS  +++    +T    + I  +    ++ G+ F+    +++ + I  F+F  D
Sbjct: 118 EIDTEQLS--KAVMEYVQTNYSADSIQAVLLKLAQSGLNFIQIGGTVVLIPIIAFYFLLD 175

Query: 181 GFSISQQLDSLGEHLFPAYWKKI----SRIVPKVIRSTFL-----------GMTIIAIGE 225
              + Q L  L    + A   +I      ++   ++  FL           G+ +I +  
Sbjct: 176 WERMLQNLRRLIPRPYEATTLQIVGECHSVLGAFVKGQFLVMLLLGVVYAVGLQLIGLEV 235

Query: 226 GLVLGSAYWLAGVPSHV--ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
           GL++G    LA +  ++  A+G+I A++A +       F    ++LL+ G +F      +
Sbjct: 236 GLIIGMVAGLASIIPYLGFAVGIIAAVIASL-----FQFGLDWMHLLLVGIVF-----MI 285

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             A+E +I    L+PFL+G  I L  +   F ++ G +  G LG+ I   + A+I V+ K
Sbjct: 286 GQAVEGYI----LQPFLLGDKIGLSPVAVVFAVLAGAQLAGFLGMLIALPVAAVIVVLLK 341

Query: 344 ESIMAIKENKEKIS 357
                ++EN E+ S
Sbjct: 342 H----LRENYERSS 351


>gi|16080231|ref|NP_391058.1| integral inner membrane protein [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221311123|ref|ZP_03592970.1| hypothetical protein Bsubs1_17271 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315450|ref|ZP_03597255.1| hypothetical protein BsubsN3_17187 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320366|ref|ZP_03601660.1| hypothetical protein BsubsJ_17155 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324650|ref|ZP_03605944.1| hypothetical protein BsubsS_17306 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|8928521|sp|O32095|YUEF_BACSU RecName: Full=UPF0118 membrane protein yueF
 gi|2635675|emb|CAB15168.1| putative integral inner membrane protein [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 369

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 64/306 (20%), Positives = 130/306 (42%), Gaps = 38/306 (12%)

Query: 78  LLFLFYYGMLE-MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ----- 131
           L++L + G+L  +   V  ++ A   G+      +++P  +   +  TK LSH Q     
Sbjct: 73  LIYLLFIGLLAFISASVGPIITAQVTGL-----FNNLPDYIKQIQALTKDLSHSQWFTWM 127

Query: 132 ------SLKILSET---FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                 S+  + ++   FL+    +     ++ FG++  +  L II +   LF+  +DG 
Sbjct: 128 MNQDYVSISKIEQSLTSFLQNLPQNITSSLSAVFGVV-TNITLVIITVPFILFYMLKDG- 185

Query: 183 SISQQLDSLGEHLFPAYWK----KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
               +   L   + PA ++    KI + +   + + F G  +I +  G      Y +AG+
Sbjct: 186 ---HRFPHLAVKILPASYRTEGLKIFKDLSDTLAAYFQGQLLICLFVGTACFIGYLIAGL 242

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK---- 294
           P  + LG++ AI  +IP   P    A ++ +       ++    L+  I + IV +    
Sbjct: 243 PYALILGIVMAITNIIPYVGPFLGAAPAVIV----GFMDSPAKALFAIIVVVIVQQLDGN 298

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK-ENK 353
            L P ++G  +    L     L+G     G+LG+ +   + A++   +   +  IK   +
Sbjct: 299 LLSPLVIGKRLNTHPLTIILLLIGAGSFGGILGMILAVPVYAVVKAFFLNIVRLIKLRQR 358

Query: 354 EKISSN 359
            ++  N
Sbjct: 359 SRLEEN 364


>gi|75762049|ref|ZP_00741959.1| Hypothetical membrane spanning protein [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218899750|ref|YP_002448161.1| sporulation integral membrane protein YtvI [Bacillus cereus G9842]
 gi|74490456|gb|EAO53762.1| Hypothetical membrane spanning protein [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218541741|gb|ACK94135.1| sporulation integral membrane protein YtvI [Bacillus cereus G9842]
          Length = 372

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 22/191 (11%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI------RSTFLGMTI 220
           ++F+++A FF   D   ++Q+   L  +    Y K I   + K +      + T + MT 
Sbjct: 179 LVFILLATFFISYDWHRLAQKTRKLLPNRVHGYGKTIFVDLKKALFGFVKAQLTLVSMTT 238

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
           + +  GL++        VP  + + +IT ++ ++P  G    F    IY+   G+     
Sbjct: 239 VIVLIGLLI------LRVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGD----- 287

Query: 280 CLFLWGAIELFIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             F  G + L+IV     + + P ++   I L  L T   L  G +  G LGL IGPV +
Sbjct: 288 TAFAIGLLILYIVVIVQRQIMEPKVLSSNIGLDPLATLVALFVGFKLFGFLGLIIGPVTL 347

Query: 336 ALIAVIWKESI 346
            L+  + K ++
Sbjct: 348 VLLNTLHKANV 358


>gi|326942380|gb|AEA18276.1| hypothetical protein CT43_CH4616 [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 372

 Score = 43.5 bits (101), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 22/191 (11%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI------RSTFLGMTI 220
           ++F+++A FF   D   ++Q+   L  +    Y K I   + K +      + T + MT 
Sbjct: 179 LVFILLATFFISYDWHRLAQKTRKLLPNRVHGYGKTIFVDLKKALFGFVKAQLTLVSMTT 238

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
           + +  GL++        VP  + + +IT ++ ++P  G    F    IY+   G+     
Sbjct: 239 VIVLIGLLI------LRVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGD----- 287

Query: 280 CLFLWGAIELFIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             F  G + L+IV     + + P ++   I L  L T   L  G +  G LGL IGPV +
Sbjct: 288 TAFAIGLLILYIVVIVQRQIMEPKVLSSNIGLDPLATLVALFVGFKLFGFLGLIIGPVTL 347

Query: 336 ALIAVIWKESI 346
            L+  + K ++
Sbjct: 348 VLLNTLHKANV 358


>gi|89100377|ref|ZP_01173241.1| hypothetical protein B14911_07438 [Bacillus sp. NRRL B-14911]
 gi|89084896|gb|EAR64033.1| hypothetical protein B14911_07438 [Bacillus sp. NRRL B-14911]
          Length = 375

 Score = 43.5 bits (101), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 92/207 (44%), Gaps = 17/207 (8%)

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM- 218
           F +    +IF ++A FF  +D +    +L  LG  L P   K  S  V   ++    G  
Sbjct: 172 FPNAATVVIFSLLATFFISKDWY----RLSILGNRLLPEKAKASSATVFTDLKKALFGFV 227

Query: 219 ----TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKG 273
               T+++I   +++     +  V   + + ++T I+ +IP  G  + F    IY  I G
Sbjct: 228 KAQATLVSI-TAIIILIGLLILRVDYAITIALVTGIVDIIPYLGTGLIFVPWIIYEAIAG 286

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
            +  A  L +   I L +  + + P ++   I +  L T   L  G +T+G LGL  GPV
Sbjct: 287 EMSTAVGLGVLYVIVL-VQRQIMEPKVLSSSIGMDPLATLVALFVGFKTIGFLGLIAGPV 345

Query: 334 LMALIAVIWKESI-----MAIKENKEK 355
           ++ +I  + K  +     + IK N  +
Sbjct: 346 VLVIITTLHKAGVFRDLWLYIKGNDRR 372


>gi|300711171|ref|YP_003736985.1| hypothetical protein HacjB3_09050 [Halalkalicoccus jeotgali B3]
 gi|299124854|gb|ADJ15193.1| hypothetical protein HacjB3_09050 [Halalkalicoccus jeotgali B3]
          Length = 326

 Score = 43.5 bits (101), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 66/128 (51%), Gaps = 5/128 (3%)

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI 271
           +  +G   +A  +G+  G    LAGVP  V    +  ++A++P  GA + +    +YLL+
Sbjct: 190 AVIVGHVFVAFVQGMAGGIGLLLAGVPDPVFWTAVMILLALLPLIGAFLVWAPAGVYLLL 249

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
            G+ +    L ++G + + ++D  +RP ++    +L       G+ GG+ ++G    F+G
Sbjct: 250 IGHPYAGLFLLVYGIVVVSMIDNYVRPIIIDARARLNPGVILVGVFGGIYSLG----FVG 305

Query: 332 PVLMALIA 339
           P+ + ++ 
Sbjct: 306 PIALGVLG 313


>gi|299769104|ref|YP_003731130.1| hypothetical protein AOLE_04300 [Acinetobacter sp. DR1]
 gi|298699192|gb|ADI89757.1| hypothetical protein AOLE_04300 [Acinetobacter sp. DR1]
          Length = 397

 Score = 43.5 bits (101), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 108/237 (45%), Gaps = 35/237 (14%)

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
           +T    + I  +    ++ G+ F+    +++ + I  F+F  D   + Q L  L    + 
Sbjct: 133 QTNYSADSIQAVLLKLAQSGLNFIQIGGTVVLIPIIAFYFLLDWDRMLQNLRRLIPRPYE 192

Query: 198 AYWKKI----SRIVPKVIRSTFL-----------GMTIIAIGEGLVLGSAYWLAGVPSHV 242
           A   +I      ++   ++  FL           G+ +I +  GL++G    LA +  ++
Sbjct: 193 ATTLQIVGECHSVLGAFVKGQFLVMLLLGVVYAVGLQLIGLEVGLIIGMVAGLASIIPYL 252

Query: 243 --ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
             A+G+I A++A +       F    ++LL+ G +F      +  A+E +I    L+PFL
Sbjct: 253 GFAVGIIAAVIASL-----FQFGLDWMHLLLVGVVF-----MIGQAVEGYI----LQPFL 298

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           +G  I L  +   F ++ G +  G LG+ I   + A+I V+ K     ++EN E+ S
Sbjct: 299 LGDKIGLSPVAVVFAVLAGAQLAGFLGMLIALPVAAVIVVLLKH----LRENYERSS 351


>gi|313681479|ref|YP_004059217.1| hypothetical protein Sulku_0350 [Sulfuricurvum kujiense DSM 16994]
 gi|313154339|gb|ADR33017.1| protein of unknown function UPF0118 [Sulfuricurvum kujiense DSM
           16994]
          Length = 355

 Score = 43.1 bits (100), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 156/363 (42%), Gaps = 58/363 (15%)

Query: 6   LNPQGIMRWMIM--FIILVSLY--FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +     +RWM    F++++ L+  FLK FF  +L A+ +     P+Y S  S+ +     
Sbjct: 1   MQQNNFLRWMSFGIFVLILWLFSPFLKSFFVALLLAMAVS----PLYRSIKSRIDRYPAL 56

Query: 62  LAVIATVSV------MCLFIVPLLFLFYYGMLE--MKELVSKVVLANQHGIP---VP--- 107
           ++V + VS       + L I   + +F Y +L+   K L    ++ N+   P   +P   
Sbjct: 57  VSVASLVSASIVSIGLSLIIFLPIAIFLYQILDNPAKTLDMIRMIGNKIDSPYLNLPTFL 116

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
           +WLSD P       L T+  +H   +      +  +     I  FAS  G          
Sbjct: 117 QWLSD-P----LYNLLTQIRNHKDEIIAFLAGWFGSG----IKTFASMLGE--------- 158

Query: 168 IFMIIALFFFY----RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
           + MI+  FFF     R        +  L   +   +  +++ I+  V+  T +G   + I
Sbjct: 159 MAMIVIFFFFLTWYGRRLLLFLLPIIPLPRSIKRDFLDEMT-IMSAVVFYTLVG---VMI 214

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLF 282
            +GL  G         + + LG +T I A+IP  G  + +  V+++  + GNI NA  + 
Sbjct: 215 AQGLAFGIFIAFFEGYNPLLLGFLTGISAIIPVVGTALVWIPVAVHEYMSGNIVNAFIIS 274

Query: 283 LWG-AIELFIVDKTLRPFLVG--------GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
           L+  A+  F +D  ++  ++         G  ++     FF +VGG+ T G  G  +GP 
Sbjct: 275 LYSWAMMAFFIDNIVKLVILNFVNRSLSIGKRRINEFVIFFAIVGGLATFGFWGFILGPA 334

Query: 334 LMA 336
           ++A
Sbjct: 335 IVA 337


>gi|228903114|ref|ZP_04067250.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           IBL 4222]
 gi|228967694|ref|ZP_04128713.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228791986|gb|EEM39569.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228856523|gb|EEN01047.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           IBL 4222]
          Length = 365

 Score = 43.1 bits (100), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 22/191 (11%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI------RSTFLGMTI 220
           ++F+++A FF   D   ++Q+   L  +    Y K I   + K +      + T + MT 
Sbjct: 172 LVFILLATFFISYDWHRLAQKTRKLLPNRVHGYGKTIFVDLKKALFGFVKAQLTLVSMTT 231

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
           + +  GL++        VP  + + +IT ++ ++P  G    F    IY+   G+     
Sbjct: 232 VIVLIGLLI------LRVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGD----- 280

Query: 280 CLFLWGAIELFIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             F  G + L+IV     + + P ++   I L  L T   L  G +  G LGL IGPV +
Sbjct: 281 TAFAIGLLILYIVVIVQRQIMEPKVLSSNIGLDPLATLVALFVGFKLFGFLGLIIGPVTL 340

Query: 336 ALIAVIWKESI 346
            L+  + K ++
Sbjct: 341 VLLNTLHKANV 351


>gi|188527586|ref|YP_001910273.1| membrane protein [Helicobacter pylori Shi470]
 gi|188143826|gb|ACD48243.1| membrane protein [Helicobacter pylori Shi470]
          Length = 348

 Score = 43.1 bits (100), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 75/166 (45%), Gaps = 13/166 (7%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA-YWLAGVPSHVALGVITAIMAMIPG-GA 258
           KKI   V  ++R   L   I  I EG+  G+   W        +LG++  + +++P  G 
Sbjct: 182 KKIFEEVAGILRIVLLTSLITVILEGVAFGAMIVWFG--HDGWSLGILYGLASLVPAVGG 239

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLV--------GGPIKLPF 309
            + +  ++IY L  GN+  A  + L+  + +  ++D  ++P L+           +K+  
Sbjct: 240 ALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKRIFKTTLKINE 299

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 300 MLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345


>gi|228910420|ref|ZP_04074235.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           IBL 200]
 gi|228849186|gb|EEM94025.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           IBL 200]
          Length = 344

 Score = 43.1 bits (100), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 22/191 (11%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI------RSTFLGMTI 220
           ++F+++A FF   D   ++Q+   L  +    Y K I   + K +      + T + MT 
Sbjct: 151 LVFILLATFFISYDWHRLAQKARKLLPNRVHGYGKTIFVDLKKALFGFVKAQLTLVSMTT 210

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
           + +  GL++        VP  + + +IT ++ ++P  G    F    IY+   G+     
Sbjct: 211 VIVLIGLLI------LRVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGD----- 259

Query: 280 CLFLWGAIELFIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             F  G + L+IV     + + P ++   I L  L T   L  G +  G LGL IGPV +
Sbjct: 260 TAFAIGLLILYIVVIVQRQIMEPKVLSSNIGLDPLATLVALFVGFKLFGFLGLIIGPVTL 319

Query: 336 ALIAVIWKESI 346
            L+  + K ++
Sbjct: 320 VLLNTLHKANV 330


>gi|308061898|gb|ADO03786.1| membrane protein [Helicobacter pylori Cuz20]
          Length = 348

 Score = 43.1 bits (100), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 75/166 (45%), Gaps = 13/166 (7%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA-YWLAGVPSHVALGVITAIMAMIPG-GA 258
           KKI   V  ++R   L   I  I EG+  G+   W        +LG++  + +++P  G 
Sbjct: 182 KKIFEEVAGILRIVLLTSLITVILEGVAFGAMIVWFG--HDGWSLGILYGLASLVPAVGG 239

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLV--------GGPIKLPF 309
            + +  ++IY L  GN+  A  + L+  + +  ++D  ++P L+           +K+  
Sbjct: 240 ALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKRIFKTTLKINE 299

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 300 MLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345


>gi|228941775|ref|ZP_04104322.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974700|ref|ZP_04135266.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981294|ref|ZP_04141594.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           Bt407]
 gi|228778494|gb|EEM26761.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           Bt407]
 gi|228785103|gb|EEM33116.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228817987|gb|EEM64065.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 365

 Score = 43.1 bits (100), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 22/191 (11%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI------RSTFLGMTI 220
           ++F+++A FF   D   ++Q+   L  +    Y K I   + K +      + T + MT 
Sbjct: 172 LVFILLATFFISYDWHRLAQKTRKLLPNRVHGYGKTIFVDLKKALFGFVKAQLTLVSMTT 231

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
           + +  GL++        VP  + + +IT ++ ++P  G    F    IY+   G+     
Sbjct: 232 VIVLIGLLI------LRVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGD----- 280

Query: 280 CLFLWGAIELFIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             F  G + L+IV     + + P ++   I L  L T   L  G +  G LGL IGPV +
Sbjct: 281 TAFAIGLLILYIVVIVQRQIMEPKVLSSNIGLDPLATLVALFVGFKLFGFLGLIIGPVTL 340

Query: 336 ALIAVIWKESI 346
            L+  + K ++
Sbjct: 341 VLLNTLHKANV 351


>gi|218886800|ref|YP_002436121.1| hypothetical protein DvMF_1707 [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757754|gb|ACL08653.1| protein of unknown function UPF0118 [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 504

 Score = 43.1 bits (100), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 76/157 (48%), Gaps = 9/157 (5%)

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK---VIRSTFLGMTIIAIG 224
           + M+  L+F  RDG    +Q+ +  + + P    +  R++     V RS F+G  ++A+ 
Sbjct: 312 LLMLFILYFLLRDG----RQMMAFVKRVSPLAHAQEDRLLTALRGVARSVFMGGVLVAVF 367

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFL 283
           +G++    + L G+P+ +  G   +  AMIP  G  + +   + YL + G  + A  L  
Sbjct: 368 QGVIGAVGFALVGLPA-LFWGFAMSFAAMIPVVGTALIWAPATAYLYLSGETWRAVFLLG 426

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
           W A+ +   D  LR + +     +P L  F  ++GG+
Sbjct: 427 WCAVLVSSSDGLLRAWFMKEGAGIPMLYLFLAILGGL 463


>gi|300710664|ref|YP_003736478.1| hypothetical protein HacjB3_06475 [Halalkalicoccus jeotgali B3]
 gi|299124347|gb|ADJ14686.1| hypothetical protein HacjB3_06475 [Halalkalicoccus jeotgali B3]
          Length = 335

 Score = 43.1 bits (100), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 70/132 (53%), Gaps = 1/132 (0%)

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI 271
           +  LG  ++AI +G + G   ++ G+P+      I  ++++IP  G+ + +   +IYL+ 
Sbjct: 195 AVLLGHVLVAIVQGAIAGIGLFVVGIPNATLWTFIMIVLSLIPIIGSFLVWGPAAIYLVA 254

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
            G       L L+G I +   D  LRP +V    K+       G++GGV  +G +GLF+G
Sbjct: 255 TGQTVFGVGLLLYGTIIVNATDNFLRPIVVDRHAKINPSIIIIGVIGGVYLIGFMGLFVG 314

Query: 332 PVLMALIAVIWK 343
           PV++  + V+ +
Sbjct: 315 PVIVGALKVVLE 326


>gi|308063643|gb|ADO05530.1| membrane protein [Helicobacter pylori Sat464]
          Length = 348

 Score = 42.7 bits (99), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 17/168 (10%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA-YWLA--GVPSHVALGVITAIMAMIPG- 256
           KKI   V  ++R   L   I  I EG+  G+   W    G P    LG++  + +++P  
Sbjct: 182 KKIFEEVAGILRIVLLTSLITVILEGVAFGAMIVWFGHDGWP----LGILYGLASLVPAV 237

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLV--------GGPIKL 307
           G  + +  ++IY L  GN+  A  + L+  + +  ++D  ++P L+           +K+
Sbjct: 238 GGALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKRIFKTTLKI 297

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 298 NEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345


>gi|224418441|ref|ZP_03656447.1| membrane protein- permease [Helicobacter canadensis MIT 98-5491]
 gi|313141972|ref|ZP_07804165.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131003|gb|EFR48620.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 354

 Score = 42.7 bits (99), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 76/163 (46%), Gaps = 23/163 (14%)

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            QQ+ +L        + ++S ++  V  S+ + M +  +  G+++    +       + L
Sbjct: 191 KQQIKTL--------YDEVSAVISVVFYSSIVSMVLQGVLFGILMAFYRY-----DSILL 237

Query: 245 GVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPF--- 299
           GV     ++IP  G  + +  V  Y L  GN+ NA  + L+  I +  + D  ++PF   
Sbjct: 238 GVFYGFASLIPVVGGTLVWLPVVCYELYLGNVTNAIVIALYSIIIIATLADNGVKPFVIA 297

Query: 300 -----LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
                L+  P+K+  +  FF ++ G+ + G  G+ +GP + AL
Sbjct: 298 FINRILIETPVKINEMLIFFAIIAGLSSFGFWGIVLGPAITAL 340


>gi|30022672|ref|NP_834303.1| hypothetical protein BC4597 [Bacillus cereus ATCC 14579]
 gi|206969761|ref|ZP_03230715.1| sporulation integral membrane protein YtvI [Bacillus cereus AH1134]
 gi|218233703|ref|YP_002369392.1| sporulation integral membrane protein YtvI [Bacillus cereus B4264]
 gi|296505068|ref|YP_003666768.1| hypothetical protein BMB171_C4239 [Bacillus thuringiensis BMB171]
 gi|29898231|gb|AAP11504.1| hypothetical Membrane Spanning Protein [Bacillus cereus ATCC 14579]
 gi|206735449|gb|EDZ52617.1| sporulation integral membrane protein YtvI [Bacillus cereus AH1134]
 gi|218161660|gb|ACK61652.1| sporulation integral membrane protein YtvI [Bacillus cereus B4264]
 gi|296326120|gb|ADH09048.1| hypothetical protein BMB171_C4239 [Bacillus thuringiensis BMB171]
          Length = 372

 Score = 42.7 bits (99), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 22/191 (11%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI------RSTFLGMTI 220
           ++F+++A FF   D   ++Q+   L  +    Y K I   + K +      + T + MT 
Sbjct: 179 LVFILLATFFISYDWHRLAQKARKLLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTT 238

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
           + +  GL++        VP  + + +IT ++ ++P  G    F    IY+   G+     
Sbjct: 239 VIVLIGLLI------LRVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGD----- 287

Query: 280 CLFLWGAIELFIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             F  G + L+IV     + + P ++   I L  L T   L  G +  G LGL IGPV +
Sbjct: 288 TAFAIGLLILYIVVIVQRQIMEPKVLSSNIGLDPLATLVALFVGFKLFGFLGLIIGPVTL 347

Query: 336 ALIAVIWKESI 346
            L+  + K ++
Sbjct: 348 VLLNTLHKANV 358


>gi|312891170|ref|ZP_07750692.1| protein of unknown function UPF0118 [Mucilaginibacter paludis DSM
           18603]
 gi|311296337|gb|EFQ73484.1| protein of unknown function UPF0118 [Mucilaginibacter paludis DSM
           18603]
          Length = 350

 Score = 42.7 bits (99), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 75/344 (21%), Positives = 149/344 (43%), Gaps = 30/344 (8%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           +Y L+G  + +L A+++     P+Y   + KK  +   +A++  +  + + ++P L L  
Sbjct: 25  VYALRGLSSSILGAIVLFTIFRPVYLYLVEKKHWNKPLVAIMIILVSLIVIVIPFLSLSI 84

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                   +V+K+        P+ +WL+ I            HL+ P  +          
Sbjct: 85  L-------VVNKISSLTSANFPIQKWLAAI------DAFAGSHLNQPHFVD-------NI 124

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           N    I  +A+      L     I   ++ L+F     F+ +++ ++      P   +  
Sbjct: 125 NITQKIGTYAAELFPSILGSAADIFLTLLVLYFLLYFMFTQNKEFEAGLIKYAPFREQHA 184

Query: 204 SRIVPKVIRSTF---LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAP 259
            +   ++  ST+   LG  II+I +G++      + GV   V  GVI   ++ +P  G P
Sbjct: 185 LKFADELRISTYSNVLGQGIISISQGIMFAIGLRITGVEDPVFWGVIGTFISFLPVVGVP 244

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF-LPTFFGLVG 318
                  I LL+    +    L ++G + +  +D  LR F++   I     L T  G++ 
Sbjct: 245 TLAIPFGIILLLNDKTWQGVFLLIYGVLIIGYIDNFLR-FIINKRIANTHPLITVIGVII 303

Query: 319 GVRTMGLLGLFIGPVLMA---LIAVIWKESIMAIKENKEKISSN 359
           G+   G+LGL  GPVL++   L+  I++ + +A  +  E+I ++
Sbjct: 304 GIPLFGILGLVFGPVLLSYFLLLVEIYETNRLA-ADRLERIQTS 346


>gi|229147156|ref|ZP_04275514.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           BDRD-ST24]
 gi|228636266|gb|EEK92738.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           BDRD-ST24]
          Length = 344

 Score = 42.7 bits (99), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 22/191 (11%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI------RSTFLGMTI 220
           ++F+++A FF   D   ++Q+   L  +    Y K I   + K +      + T + MT 
Sbjct: 151 LVFILLATFFISYDWHRLAQKARKLLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTT 210

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
           + +  GL++        VP  + + +IT ++ ++P  G    F    IY+   G+     
Sbjct: 211 VIVLIGLLI------LRVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGD----- 259

Query: 280 CLFLWGAIELFIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             F  G + L+IV     + + P ++   I L  L T   L  G +  G LGL IGPV +
Sbjct: 260 TAFAIGLLILYIVVIVQRQIMEPKVLSSNIGLDPLATLVALFVGFKLFGFLGLIIGPVTL 319

Query: 336 ALIAVIWKESI 346
            L+  + K ++
Sbjct: 320 VLLNTLHKANV 330


>gi|298243575|ref|ZP_06967382.1| protein of unknown function UPF0118 [Ktedonobacter racemifer DSM
           44963]
 gi|297556629|gb|EFH90493.1| protein of unknown function UPF0118 [Ktedonobacter racemifer DSM
           44963]
          Length = 381

 Score = 42.7 bits (99), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 91/213 (42%), Gaps = 10/213 (4%)

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
             FL T G +F  R A  F   FL++ +  + + I   +   DG  + Q L         
Sbjct: 150 RQFLLTRGEEF-TRDAIPFLRSFLEFLIDTVIVAILSIYLLIDGTRVIQWLRRNTPQAAR 208

Query: 198 AYW--KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           A +    + R+V   IR  F    +I++  GL +G  + L   P    LG++  IMA IP
Sbjct: 209 ANFLLDTLQRVVGGYIRGQFTLALLISVLVGLGMGFIFHL---PYAFLLGILAFIMAFIP 265

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                   AV I + +  +   A  + ++      I  + + P +VG  + L  + + F 
Sbjct: 266 VLGTFISGAVCILIALTQSWVTALLVLVYFVFIHVIEGEVVGPRIVGKSVGLHPIVSLFA 325

Query: 316 LVGGVRTMGLLG-LFIGP---VLMALIAVIWKE 344
           LV G    G+ G LF  P   VL  +I V+W E
Sbjct: 326 LVAGGELFGIWGTLFASPIAGVLQTIIIVLWSE 358


>gi|229081848|ref|ZP_04214340.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock4-2]
 gi|228701436|gb|EEL53930.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock4-2]
          Length = 365

 Score = 42.7 bits (99), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 22/191 (11%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI------RSTFLGMTI 220
           ++F+++A FF   D   ++Q+   L  +    Y K I   + K +      + T + MT 
Sbjct: 172 LVFILLATFFISYDWHRLAQKARKLLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTT 231

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
           + +  GL++        VP  + + +IT ++ ++P  G    F    IY+   G+     
Sbjct: 232 VIVLIGLLI------LRVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGD----- 280

Query: 280 CLFLWGAIELFIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             F  G + L+IV     + + P ++   I L  L T   L  G +  G LGL IGPV +
Sbjct: 281 TAFAIGLLILYIVVIVQRQIMEPKVLSSNIGLDPLATLVALFVGFKLFGFLGLIIGPVTL 340

Query: 336 ALIAVIWKESI 346
            L+  + K ++
Sbjct: 341 VLLNTLHKANV 351


>gi|42523616|ref|NP_968996.1| hypothetical protein Bd2150 [Bdellovibrio bacteriovorus HD100]
 gi|39575822|emb|CAE79989.1| putative membrane protein [Bdellovibrio bacteriovorus HD100]
          Length = 345

 Score = 42.7 bits (99), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 120/287 (41%), Gaps = 45/287 (15%)

Query: 71  MCLFIVPLLFLFYY--------GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           MCLF++PL    Y           +E  +++S+      + I + + LSD  G       
Sbjct: 72  MCLFLIPLSLAIYRIVVYASQPKNIETDQILSQAHNLKNYAINMLQKLSDFTG------- 124

Query: 123 WTKHLSHPQSLKILSETFLK--TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF----- 175
               L+ P   +++     K  +  I++  +F  +  +I L   + +I M + L      
Sbjct: 125 --TDLAGPAR-EVMENVLHKIGSGAIEYSTQFLGQLPVILLMIFVFLISMTVMLMKAPGI 181

Query: 176 --FFYRDGFSISQQLDSLGEHLFPAYWKKI-SRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
             F  R     +   + L      + W  + S +V  +I+++ +G   +  GEG      
Sbjct: 182 KEFTLRYSPLKADTTEKLIVITKKSCWLTLFSTLVIGLIQASLIGAGSLIFGEG-----D 236

Query: 233 YWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
           +WL        +  +T  ++ IP  G AP+ +  + +   I      A  LF+   I   
Sbjct: 237 FWL--------VLTVTFFVSFIPVIGAAPVGYL-LCVLAFIGDRTGAAIGLFIVATIAGS 287

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           I D  L+PF +GG   +  +  F  +VG +  MGL GL IGPV+M L
Sbjct: 288 I-DNILKPFFIGGDQDISPVIGFTCVVGAIIMMGLPGLLIGPVVMNL 333


>gi|157961667|ref|YP_001501701.1| hypothetical protein Spea_1843 [Shewanella pealeana ATCC 700345]
 gi|157846667|gb|ABV87166.1| protein of unknown function UPF0118 [Shewanella pealeana ATCC
           700345]
          Length = 383

 Score = 42.7 bits (99), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 149/357 (41%), Gaps = 50/357 (14%)

Query: 9   QGIMRWMIMFIILV-SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +  +R  ++F++LV +   +K F  PVL   II     P+        +      A I  
Sbjct: 19  ESAIRIGLLFMLLVWTFDIIKPFVIPVLWGAIIAVALMPMTQKLERALKGRRGLAATILA 78

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG---IPVP-RWLSDIPG-GMWASEL 122
           ++ + L I P    F+     + + VS +V   Q G   IP P + ++DIP  G    + 
Sbjct: 79  LAGIILLIAP----FWIVSSSIFDGVSHIVAVMQAGDIKIPGPTQRVADIPLIGDKLFDA 134

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRF-------ASRFGMIFLDYCLSIIFMIIALF 175
           W            L  T L+   + F+P+        A   G       + II + IA  
Sbjct: 135 WA-----------LFATNLEKAVLHFLPQIKTGVSAAAGMLGSSLGTLVMFIISLAIAGG 183

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F      S S  + ++   +     ++ + +    IRS  LG+  +A  + L++GSA + 
Sbjct: 184 FMAHAEKS-SAAVSTVAVRVVGKNGEEWTSLTAATIRSVLLGVVGVAFIQSLLIGSALFT 242

Query: 236 AGVPSHVALGVITAI-----MAMIPG---GAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
             +P   A G+ T I     +A +P      PI F     Y+    +   AT   +W  I
Sbjct: 243 FSIP---AAGIFTFIVFILGIAQLPPLLVVLPIIF-----YVFSTQDSTPATIFTVWVLI 294

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              + D  L+P L+G  + +P      G +GG+   G++GLF+G V++A    IW E
Sbjct: 295 A-GVSDSFLKPMLMGRGVDVPMPVILIGAIGGMIAAGIIGLFLGAVILA----IWYE 346


>gi|321312725|ref|YP_004205012.1| putative integral inner membrane protein [Bacillus subtilis BSn5]
 gi|291485630|dbj|BAI86705.1| hypothetical protein BSNT_04678 [Bacillus subtilis subsp. natto
           BEST195]
 gi|320018999|gb|ADV93985.1| putative integral inner membrane protein [Bacillus subtilis BSn5]
          Length = 369

 Score = 42.7 bits (99), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 63/305 (20%), Positives = 128/305 (41%), Gaps = 36/305 (11%)

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ------ 131
           L++L + G+L         ++ +Q    V    +++P  +   +  TK LSH Q      
Sbjct: 73  LIYLLFIGLLAFISASVGPIITSQ----VTGLFNNLPDYIKQIQALTKDLSHSQWFTWMM 128

Query: 132 -----SLKILSET---FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                S+  + ++   FL+    +     ++ FG++  +  L II +   LF+  +DG  
Sbjct: 129 NQDYVSISKIEQSLTSFLQNLPQNITSSLSAVFGVV-TNITLVIITVPFILFYMLKDG-- 185

Query: 184 ISQQLDSLGEHLFPAYWK----KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
              +   L   + PA ++    KI + +   + + F G  +I +  G      Y +AG+P
Sbjct: 186 --HRFPHLAVKILPASYRTEGLKIFKDLSDTLAAYFQGQLLICLFVGTACFIGYLIAGLP 243

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK----T 295
             + LG++ AI  +IP   P    A ++ +       ++    L+  I + IV +     
Sbjct: 244 YALILGIVMAITNIIPYVGPFLGAAPAVIV----GFMDSPAKALFAIIVVVIVQQLDGNL 299

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK-ENKE 354
           L P ++G  +    L     L+G     G+LG+ +   + A++   +   +  IK   + 
Sbjct: 300 LSPLVIGKRLNTHPLTIILLLIGAGSFGGILGMILAVPVYAVVKAFFLNIVRLIKLRQRS 359

Query: 355 KISSN 359
           ++  N
Sbjct: 360 RLEEN 364


>gi|157164430|ref|YP_001467226.1| hypothetical protein CCC13826_0381 [Campylobacter concisus 13826]
 gi|112802037|gb|EAT99381.1| acid membrane antigen A [Campylobacter concisus 13826]
          Length = 346

 Score = 42.7 bits (99), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 68/318 (21%), Positives = 130/318 (40%), Gaps = 65/318 (20%)

Query: 50  SFISKKEESSTFLAVIATVSVMCLFIVPLLFLF-----YYGMLEMKELVSKVVLANQHGI 104
           +F++  +   T  + + T +++CLFI PLL+       Y    ++  +   +     +  
Sbjct: 45  AFLALTKNRKTLSSGLTTFALLCLFIAPLLYAVVEIAKYAAGFDINNVTKTIEFIKNYDF 104

Query: 105 PVPRWLS-------DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFG 157
            +P  ++       +  GG+    L+++  ++  +L  LS  F    G+D          
Sbjct: 105 SLPESINFLEPKIKEFIGGLDIKMLFSQVAANLANLGKLSLKF----GVD---------- 150

Query: 158 MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL------FPAYWKKISRIVPKVI 211
                       MII L FF+      ++ ++ L E L        +   ++  ++  V 
Sbjct: 151 ------------MIIILVFFFFCNLYGNELINYLKEALPLKKEDTESILSEVGNVMGVVF 198

Query: 212 RSTFLGMTIIAIGEGL---VLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
            ST   M I    +G    ++ S Y   GV +    G+  +  ++IP  G  +++  +SI
Sbjct: 199 YSTIANMII----QGFLFAIITSFYGYDGVLT----GIFFSFASLIPVVGGFLAWAPISI 250

Query: 268 YLLIKGNIFNATCLFLWGAIELFI-VDKTLRP--------FLVGGPIKLPFLPTFFGLVG 318
           Y    GN   A  + L+  I + +  D  L+P         LV  P K+  L  FF ++ 
Sbjct: 251 YEFANGNTAAAITITLYTIIVISLGADTLLKPPIIKFINSKLVKIPTKINELLIFFAMIA 310

Query: 319 GVRTMGLLGLFIGPVLMA 336
           G+ T G  G+ +GP ++ 
Sbjct: 311 GISTFGFWGVILGPAIVT 328


>gi|327190039|gb|EGE57156.1| hypothetical protein RHECNPAF_470031 [Rhizobium etli CNPAF512]
          Length = 400

 Score = 42.7 bits (99), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 33/52 (63%)

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           AI + I+D  L+P L+   +  P      G++GG  + GLLGLF+GPV++++
Sbjct: 313 AIPIMIIDNILKPILMARGLSTPMPVILIGVIGGTLSQGLLGLFLGPVVLSV 364


>gi|253827757|ref|ZP_04870642.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|253511163|gb|EES89822.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 324

 Score = 42.7 bits (99), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 76/163 (46%), Gaps = 23/163 (14%)

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            QQ+ +L        + ++S ++  V  S+ + M +  +  G+++    +       + L
Sbjct: 161 KQQIKTL--------YDEVSAVISVVFYSSIVSMVLQGVLFGILMAFYRY-----DSILL 207

Query: 245 GVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPF--- 299
           GV     ++IP  G  + +  V  Y L  GN+ NA  + L+  I +  + D  ++PF   
Sbjct: 208 GVFYGFASLIPVVGGTLVWLPVVCYELYLGNVTNAIVIALYSIIIIATLADNGVKPFVIA 267

Query: 300 -----LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
                L+  P+K+  +  FF ++ G+ + G  G+ +GP + AL
Sbjct: 268 FINRILIETPVKINEMLIFFAIIAGLSSFGFWGIVLGPAITAL 310


>gi|255323344|ref|ZP_05364478.1| acid membrane antigen A [Campylobacter showae RM3277]
 gi|255299636|gb|EET78919.1| acid membrane antigen A [Campylobacter showae RM3277]
          Length = 346

 Score = 42.7 bits (99), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 70/325 (21%), Positives = 142/325 (43%), Gaps = 29/325 (8%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           +Y  K F   +  A ++   +  +   F+   +   T  A + T+++  LFI PLL    
Sbjct: 19  VYLFKPFLLNIFIAALLAVATSNVNVKFLQLTKGKRTLSAALTTLALFSLFIAPLL---- 74

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
           Y ++E+ +       AN +   +   L+    G +      K L  P+  +++++  +K 
Sbjct: 75  YAVIEIAKHA-----ANFNTGYITNTLNYFQSGNFQLPEPIKFL-EPKIKEMIADIDVKA 128

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS---LGEHLFPAYW 200
              + I   A   G   +++ + +IF+++  FF    G  +   L S   + E       
Sbjct: 129 ISANLIANLAG-IGKSSVNFLVDMIFILVFFFFAVLYGSELVGYLKSALPMKESESEFIL 187

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
            +++ ++  V+ S    + I AI +G +        G    + +G++ A  +++P  G  
Sbjct: 188 SEVANVMSVVLYS----IVINAILQGCLFAIITISYGYNGFL-MGILFAFTSLVPVVGGL 242

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPF--------LVGGPIKLPFL 310
           +++  +S+Y    GN   A  + ++  I + +V D  L+P         LV  P K+  L
Sbjct: 243 LAWGPISLYEFANGNTAAAIVIAVYTIIVISVVADTFLKPIVIKFINDKLVKIPTKINEL 302

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLM 335
             FF ++ G+ T G  GL +GP ++
Sbjct: 303 LLFFSMIAGISTFGFWGLILGPAIV 327


>gi|228954865|ref|ZP_04116885.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228960864|ref|ZP_04122497.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229048303|ref|ZP_04193871.1| Sporulation integral membrane protein YtvI [Bacillus cereus AH676]
 gi|229112062|ref|ZP_04241605.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock1-15]
 gi|229129880|ref|ZP_04258846.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           BDRD-Cer4]
 gi|229152791|ref|ZP_04280974.1| Sporulation integral membrane protein YtvI [Bacillus cereus m1550]
 gi|229180915|ref|ZP_04308250.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           172560W]
 gi|229192797|ref|ZP_04319755.1| Sporulation integral membrane protein YtvI [Bacillus cereus ATCC
           10876]
 gi|228590636|gb|EEK48497.1| Sporulation integral membrane protein YtvI [Bacillus cereus ATCC
           10876]
 gi|228602472|gb|EEK59958.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           172560W]
 gi|228630611|gb|EEK87257.1| Sporulation integral membrane protein YtvI [Bacillus cereus m1550]
 gi|228653571|gb|EEL09443.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           BDRD-Cer4]
 gi|228671385|gb|EEL26686.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock1-15]
 gi|228723028|gb|EEL74405.1| Sporulation integral membrane protein YtvI [Bacillus cereus AH676]
 gi|228798760|gb|EEM45740.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228804854|gb|EEM51453.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 365

 Score = 42.7 bits (99), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 22/191 (11%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI------RSTFLGMTI 220
           ++F+++A FF   D   ++Q+   L  +    Y K I   + K +      + T + MT 
Sbjct: 172 LVFILLATFFISYDWHRLAQKARKLLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTT 231

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
           + +  GL++        VP  + + +IT ++ ++P  G    F    IY+   G+     
Sbjct: 232 VIVLIGLLI------LRVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGD----- 280

Query: 280 CLFLWGAIELFIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             F  G + L+IV     + + P ++   I L  L T   L  G +  G LGL IGPV +
Sbjct: 281 TAFAIGLLILYIVVIVQRQIMEPKVLSSNIGLDPLATLVALFVGFKLFGFLGLIIGPVTL 340

Query: 336 ALIAVIWKESI 346
            L+  + K ++
Sbjct: 341 VLLNTLHKANV 351


>gi|229072098|ref|ZP_04205307.1| Sporulation integral membrane protein YtvI [Bacillus cereus F65185]
 gi|228711032|gb|EEL62998.1| Sporulation integral membrane protein YtvI [Bacillus cereus F65185]
          Length = 365

 Score = 42.7 bits (99), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 22/191 (11%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI------RSTFLGMTI 220
           ++F+++A FF   D   ++Q+   L  +    Y K I   + K +      + T + MT 
Sbjct: 172 LVFILLATFFISYDWHRLAQKARKLLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTT 231

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
           + +  GL++        VP  + + +IT ++ ++P  G    F    IY+   G+     
Sbjct: 232 VIVLIGLLI------LRVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGD----- 280

Query: 280 CLFLWGAIELFIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             F  G + L+IV     + + P ++   I L  L T   L  G +  G LGL IGPV +
Sbjct: 281 TAFAIGLLILYIVVIVQRQIMEPKVLSSNIGLDPLATLVALFVGFKLFGFLGLIIGPVTL 340

Query: 336 ALIAVIWKESI 346
            L+  + K ++
Sbjct: 341 VLLNTLHKANV 351


>gi|15645192|ref|NP_207362.1| membrane protein [Helicobacter pylori 26695]
 gi|8928454|sp|O25291|Y567_HELPY RecName: Full=UPF0118 membrane protein HP_0567
 gi|2313674|gb|AAD07623.1| membrane protein [Helicobacter pylori 26695]
          Length = 348

 Score = 42.7 bits (99), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 75/166 (45%), Gaps = 13/166 (7%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA-YWLAGVPSHVALGVITAIMAMIPG-GA 258
           KKI   V  ++R   L   I  I EG+  G    W        +LG++  + +++P  G 
Sbjct: 182 KKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFG--HDGWSLGILYGLASLVPAVGG 239

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLV--------GGPIKLPF 309
            + +  ++IY L  GN+  A  + L+  + +  ++D  ++P L+           +K+  
Sbjct: 240 ALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKRIFKTTLKINE 299

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +  FF ++ G+   G  G+ +GP + A    + +       +N++K
Sbjct: 300 MLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNEQK 345


>gi|228923341|ref|ZP_04086629.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228836295|gb|EEM81648.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 365

 Score = 42.7 bits (99), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 22/191 (11%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI------RSTFLGMTI 220
           ++F+++A FF   D   ++Q+   L  +    Y K I   + K +      + T + MT 
Sbjct: 172 LVFILLATFFISYDWHRLAQKARKLLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTT 231

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
           + +  GL++        VP  + + +IT ++ ++P  G    F    IY+   G+     
Sbjct: 232 VIVLIGLLI------LRVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGD----- 280

Query: 280 CLFLWGAIELFIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             F  G + L+IV     + + P ++   I L  L T   L  G +  G LGL IGPV +
Sbjct: 281 TAFAIGLLILYIVVIVQRQIMEPKVLSSNIGLDPLATLVALFVGFKLFGFLGLIIGPVTL 340

Query: 336 ALIAVIWKESI 346
            L+  + K ++
Sbjct: 341 VLLNTLHKANV 351


>gi|154149249|ref|YP_001406317.1| acid membrane antigen A [Campylobacter hominis ATCC BAA-381]
 gi|153805258|gb|ABS52265.1| acid membrane antigen A [Campylobacter hominis ATCC BAA-381]
          Length = 352

 Score = 42.4 bits (98), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 73/329 (22%), Positives = 137/329 (41%), Gaps = 33/329 (10%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           +Y  + F   +   ++I  ++  +    +   +      AV+ TV +  LF VP    F 
Sbjct: 20  IYLFQSFLLAISIGVLIAVSTAGLNEKILKFTKNRQIVSAVLTTVILCVLFFVP----FI 75

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
           Y + E+ +      LAN     + + LS I    ++   + K+   P     ++   L  
Sbjct: 76  YAIAEIAK-----SLANIDVALLDKTLSYIKNYEFSLPNFAKNF-EPDIKSFIAN--LNF 127

Query: 144 NGI-DFIPRFASRFGMIFLDYCLSIIFMIIALFF---FYRDGFSISQQLDSLGEHLFPAY 199
            GI   I  +AS       ++ L +  +II  FF   + RD  +  ++   + E+     
Sbjct: 128 EGIIKQILSYASGIAKSSANFALQMFLIIIFYFFTNLYGRDILNFFKKSIPIAENELDYM 187

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP--GG 257
           +K+ S  +  V  ST L     A+ +G +      + G    +   ++ A  ++IP  GG
Sbjct: 188 FKQTSNTMSVVFYSTILN----AVLQGFLFSIIAAIYGF-DMIFFAILYAFCSLIPIIGG 242

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPF--------LVGGPIKLP 308
           A + +  + +Y L  GN   A  + L+  I +  I D  ++P         LV  P  + 
Sbjct: 243 A-LCWAPLGLYELANGNFSAAVIISLYSIIVISTIADNFIKPVIIRFINSKLVDNPANIN 301

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
            +  FF ++ G+ T G  G+ +GP ++ L
Sbjct: 302 EILIFFAMLAGIGTFGFWGMILGPAILTL 330


>gi|33596416|ref|NP_884059.1| hypothetical protein BPP1789 [Bordetella parapertussis 12822]
 gi|33566185|emb|CAE37091.1| conserved hypothetical protein [Bordetella parapertussis]
          Length = 361

 Score = 42.4 bits (98), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 63/313 (20%), Positives = 133/313 (42%), Gaps = 22/313 (7%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F   +L ++I+  T  P++              AV+ T++ M + +VP       G +  
Sbjct: 42  FIGMLLWSIILAVTLAPLHMRLTRLLGARPRLAAVVLTLATMLVLLVP-------GAMLT 94

Query: 90  KELVSKVVLANQHG------IPVP-RWLSDIPG-GMWASELWTKHLSHPQSLKILSETFL 141
             L   +V    H       IP P  ++ ++P  G+   E+W + +++ Q +    +  L
Sbjct: 95  ASLGDSLVNIFHHSTGRIVRIPAPPDFVIELPLIGVRLHEIWLQAMTNLQDVLKPLQPHL 154

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF-PAYW 200
            T G   +   AS  G+    +  SI   I  +   Y D     +   ++G  +  P   
Sbjct: 155 ATAGRWLLAGMASA-GLGIAVFLASI--AIAGVILVYAD--PAKRAAHAIGVRIAGPEQG 209

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             ++++    IR+   G+  +A+ + ++ G  + LAGVP+     ++  ++ ++     +
Sbjct: 210 VALAQLTAATIRAVAQGVIGVALIQAVLAGLGFLLAGVPAAGLWAIVALLICIVQLPLFL 269

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
               + +Y+ +      A    +W  + + + D  L+P ++   + +P      G +GGV
Sbjct: 270 LMVPMVVYVFLNNTPTVAAVFAVW-CLLVSLCDNVLKPLMLARGVDIPIPVILIGALGGV 328

Query: 321 RTMGLLGLFIGPV 333
              G++GLF+G V
Sbjct: 329 LAAGIVGLFLGSV 341


>gi|108562971|ref|YP_627287.1| membrane protein [Helicobacter pylori HPAG1]
 gi|107836744|gb|ABF84613.1| membrane protein [Helicobacter pylori HPAG1]
          Length = 349

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 74/166 (44%), Gaps = 13/166 (7%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA-YWLAGVPSHVALGVITAIMAMIPG-GA 258
           KKI   V  ++R   L   I  I EG+  G    W        +LG++  + +++P  G 
Sbjct: 182 KKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFG--HDGWSLGILYGLASLVPAVGG 239

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLV--------GGPIKLPF 309
            + +  V+IY L  GN+  A  + L+  + +  ++D  ++P L+           +K+  
Sbjct: 240 ALIWIPVAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKRIFKTTLKINE 299

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 300 MLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345


>gi|227893168|ref|ZP_04010973.1| permease [Lactobacillus ultunensis DSM 16047]
 gi|227865034|gb|EEJ72455.1| permease [Lactobacillus ultunensis DSM 16047]
          Length = 400

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 24/194 (12%)

Query: 164 CLSIIFMIIA--------LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
            +SII MI+         LFF  +DG  +   +       + A + K+   +   + S  
Sbjct: 178 AVSIITMIVMTLLTAPFILFFMLKDGHQLRPYITKFAPENWQASFSKLLYDINYALASYI 237

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAV-------SI 267
            G   +A   G++    Y + G+P  +AL ++   M +IP  G P++   V       S+
Sbjct: 238 RGQITVAFWVGVMFTIGYIVIGLPYGLALAILAGFMNLIPYFGTPLALIPVIVIAVMTSV 297

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            +LIK        +F+   IE  I  + L P ++G  +++  + T   L+G     GL G
Sbjct: 298 PMLIK-----VLVIFV---IEQAIETRILSPLVMGNKMEMHPVTTILLLIGASSVWGLWG 349

Query: 328 LFIGPVLMALIAVI 341
           +  G  + A++ +I
Sbjct: 350 VIFGIPIYAILKII 363


>gi|127511625|ref|YP_001092822.1| hypothetical protein Shew_0691 [Shewanella loihica PV-4]
 gi|126636920|gb|ABO22563.1| protein of unknown function UPF0118 [Shewanella loihica PV-4]
          Length = 377

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 77/150 (51%), Gaps = 23/150 (15%)

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
           + +    IRS  LG+  +A  + +++GSA ++ G+P   A G++T ++A+  G A     
Sbjct: 211 TSLTAATIRSVLLGVVGVAFIQAMLIGSALFVFGLP---AAGLLT-LVALFLGIA--QLP 264

Query: 264 AVSIYLLIKGNIFN------ATCLFLW---GAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           A+ I L + G  ++      AT   +W   G I     D  L+P L+G  + +P      
Sbjct: 265 ALIIVLPLIGYAYSSMEGTSATIFSVWIFLGGIS----DNILKPMLMGRGVDVPMPVILI 320

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           G +GG+   G++GLF+G V++A    IW E
Sbjct: 321 GAIGGMLFAGIIGLFLGAVVLA----IWYE 346


>gi|166366520|ref|YP_001658793.1| hypothetical protein MAE_37790 [Microcystis aeruginosa NIES-843]
 gi|166088893|dbj|BAG03601.1| UPF0118 membrane protein [Microcystis aeruginosa NIES-843]
          Length = 186

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 22/147 (14%)

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI 271
           ++FL  +++ I  GL+L S            LGVI AI    PG GA +    V+I    
Sbjct: 49  TSFLSFSLLGIKYGLILASI-----------LGVIDAI----PGVGATLGILLVTILTFT 93

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
              +  A   F+   + + I D  LRP ++G  ++L  +  F  L  G R  GLLG+F+ 
Sbjct: 94  SQGLAIAVKAFIVCVVLVQIQDNILRPKVMGNALELNPVILFLSLFIGERVAGLLGIFLS 153

Query: 332 PVLMALIAVIW-----KESIMAIKENK 353
             +  +IA IW     ++ I A++EN+
Sbjct: 154 IPIAGMIA-IWIGSSEEKPITALEENQ 179


>gi|49187485|ref|YP_030738.1| hypothetical protein BAS4490 [Bacillus anthracis str. Sterne]
 gi|165869655|ref|ZP_02214313.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0488]
 gi|167638139|ref|ZP_02396417.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0193]
 gi|170705406|ref|ZP_02895870.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0389]
 gi|177651155|ref|ZP_02933986.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0174]
 gi|190569043|ref|ZP_03021943.1| sporulation integral membrane protein YtvI [Bacillus anthracis
           Tsiankovskii-I]
 gi|227817381|ref|YP_002817390.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           CDC 684]
 gi|229603687|ref|YP_002868875.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0248]
 gi|254736704|ref|ZP_05194410.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           Western North America USA6153]
 gi|254754661|ref|ZP_05206696.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           Vollum]
 gi|254757493|ref|ZP_05209520.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           Australia 94]
 gi|49181412|gb|AAT56788.1| membrane protein, putative [Bacillus anthracis str. Sterne]
 gi|164714484|gb|EDR20003.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0488]
 gi|167513956|gb|EDR89324.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0193]
 gi|170129531|gb|EDS98394.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0389]
 gi|172082981|gb|EDT68043.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0174]
 gi|190559825|gb|EDV13810.1| sporulation integral membrane protein YtvI [Bacillus anthracis
           Tsiankovskii-I]
 gi|227005027|gb|ACP14770.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           CDC 684]
 gi|229268095|gb|ACQ49732.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0248]
          Length = 372

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 22/191 (11%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI------RSTFLGMTI 220
           ++F+++A FF   D   ++Q++     +    Y K I   + K +      + T + MT 
Sbjct: 179 LVFVLLATFFISNDWHRLAQKVRKFLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTT 238

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
           + +  GL++        VP  + + +IT ++ ++P  G    F    IY+   G+     
Sbjct: 239 VIVLIGLLI------LRVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGD----- 287

Query: 280 CLFLWGAIELFIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             F  G + L+IV     + + P ++   I L  L T   L  G +  G LGL IGPV +
Sbjct: 288 TAFAIGLLILYIVVIVQRQIMEPKVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVTL 347

Query: 336 ALIAVIWKESI 346
            L+  + K  +
Sbjct: 348 VLLNTLHKARV 358


>gi|218515641|ref|ZP_03512481.1| hypothetical protein Retl8_19092 [Rhizobium etli 8C-3]
          Length = 132

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA-----LIAV 340
           AI + I+D  L+P L+   +  P      G++GG  + GLLGLF+GPV+++     L A 
Sbjct: 45  AIPIMIIDNILKPILMARGLSTPMPVILIGVIGGTLSQGLLGLFLGPVVLSVFYELLRAW 104

Query: 341 IWKESIMAIKENKEKIS 357
            W  S+    EN    S
Sbjct: 105 AWP-SVSTAPENSRPAS 120


>gi|157962115|ref|YP_001502149.1| hypothetical protein Spea_2294 [Shewanella pealeana ATCC 700345]
 gi|157847115|gb|ABV87614.1| protein of unknown function UPF0118 [Shewanella pealeana ATCC
           700345]
          Length = 360

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 165/368 (44%), Gaps = 50/368 (13%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTS----WPIYSSFISKKEESSTFLAVIATVSV 70
           +++F + ++ Y      +P L ++++GF       P+++    +   S    +V +   V
Sbjct: 12  VLLFALAIAFYACYLLISPYLGSIVLGFIVSILFLPLHTRIQQRMPNSPNMASVFSCTLV 71

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             + ++PLLF+    M  M E ++   + N +G     WL+D  GG          L+HP
Sbjct: 72  TVMVLIPLLFV---AMAIMNEGIN--FMTNAYG-----WLTD--GGA------KSFLAHP 113

Query: 131 --QSLKILSETFLKTNGI---DFIPRFASRFGMI--------------FLDYCLSIIFMI 171
             QS   L   +L  + I   + + + A +   +                D  L    M+
Sbjct: 114 YIQSGVALLNKWLPFDTIKIDELVQQAAGKVTQLSSSLLTASTGIAGDVADTVLDFGLML 173

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK---VIRSTFLGMTIIAIGEGLV 228
             LFFF RD     Q++     H+ P    +   I  +   V +S  LG  + A+ +G +
Sbjct: 174 FVLFFFLRD----QQKIIDNTRHIIPLSRSQQGLIFNEIGVVAKSAVLGAFLTALAQGAL 229

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
            G A  LAG  S +  G + A  + IP  G  + +   SIYL I G+   A  L +WG +
Sbjct: 230 GGIAMSLAGF-SGLFWGSMMAFASFIPFVGTAMIWLPASIYLFITGDWQWALFLIVWGVV 288

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            +  +D  LRP+L+ G   +  L  FF L+GG++  GL+GL  GP++ A+  V+ +   +
Sbjct: 289 VIGSIDNFLRPWLMQGNTGMSTLLLFFSLLGGLQLFGLIGLIYGPIIFAVTLVLARLYEI 348

Query: 348 AIKENKEK 355
             K+  E+
Sbjct: 349 EFKDFIEQ 356


>gi|33602293|ref|NP_889853.1| hypothetical protein BB3318 [Bordetella bronchiseptica RB50]
 gi|33576732|emb|CAE33810.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 360

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 63/313 (20%), Positives = 133/313 (42%), Gaps = 22/313 (7%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F   +L ++I+  T  P++              AV+ T++ M + +VP       G +  
Sbjct: 41  FIGMLLWSIILAVTLAPLHMRLTRLLGARPRLAAVVLTLATMLVLLVP-------GAMLT 93

Query: 90  KELVSKVVLANQHG------IPVP-RWLSDIPG-GMWASELWTKHLSHPQSLKILSETFL 141
             L   +V    H       IP P  ++ ++P  G+   E+W + +++ Q +    +  L
Sbjct: 94  ASLGDSLVNIFHHSTGRIVRIPAPPDFVIELPLIGVRLHEIWLQAMTNLQDVLKPLQPHL 153

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF-PAYW 200
            T G   +   AS  G+    +  SI   I  +   Y D     +   ++G  +  P   
Sbjct: 154 ATAGRWLLAGMASA-GLGIAVFLASI--AIAGVILVYAD--PAKRAAHAIGVRIAGPEQG 208

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             ++++    IR+   G+  +A+ + ++ G  + LAGVP+     ++  ++ ++     +
Sbjct: 209 VALAQLTAATIRAVAQGVIGVALIQAVLAGLGFLLAGVPAAGLWAIVALLICIVQLPLFL 268

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
               + +Y+ +      A    +W  + + + D  L+P ++   + +P      G +GGV
Sbjct: 269 LMVPMVVYVFLNNTPTVAAVFAVW-CLLVSLCDNVLKPLMLARGVDIPIPVILIGALGGV 327

Query: 321 RTMGLLGLFIGPV 333
              G++GLF+G V
Sbjct: 328 LAAGIVGLFLGSV 340


>gi|227822502|ref|YP_002826474.1| hypothetical protein NGR_c19580 [Sinorhizobium fredii NGR234]
 gi|227341503|gb|ACP25721.1| conserved hypothetical protein [Sinorhizobium fredii NGR234]
          Length = 370

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 3/67 (4%)

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL---IAVIWKESIM 347
           ++D  L+P LV   +K P L    G++GG  + GL+GLF+GP+++ +   + V W  S+ 
Sbjct: 302 LIDNVLKPVLVARGLKTPMLVILAGVIGGTLSYGLIGLFLGPIVLGVFYDLVVAWMRSVP 361

Query: 348 AIKENKE 354
             ++  +
Sbjct: 362 RPEDETK 368


>gi|109947348|ref|YP_664576.1| hypothetical protein Hac_0787 [Helicobacter acinonychis str.
           Sheeba]
 gi|109714569|emb|CAJ99577.1| amaA [Helicobacter acinonychis str. Sheeba]
          Length = 348

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 75/165 (45%), Gaps = 13/165 (7%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           KKI   V  ++R   L   I  I EG+  G      G      LG++  + +++P  G  
Sbjct: 182 KKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFGHDGWF-LGILYGLASLVPAVGGA 240

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLV--------GGPIKLPFL 310
           + +  ++IY L  G++  A  + L+  + +  ++D  L+PFL+           +K+  +
Sbjct: 241 LIWIPIAIYELYHGHVNGAIFIVLYSILLIGGLIDSVLKPFLIVVVKKRIFKTTLKINEM 300

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK--ESIMAIKENK 353
             FF ++ G+   G  G+ +GP + A    + +  E+    KE K
Sbjct: 301 LIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQKEQK 345


>gi|229175304|ref|ZP_04302819.1| Sporulation integral membrane protein YtvI [Bacillus cereus MM3]
 gi|228608136|gb|EEK65443.1| Sporulation integral membrane protein YtvI [Bacillus cereus MM3]
          Length = 365

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 86/191 (45%), Gaps = 22/191 (11%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI------RSTFLGMTI 220
           ++F+++A FF   D   ++Q++     +    Y K I   + K +      + T + MT 
Sbjct: 172 LVFVLLATFFISYDWHRLAQKVRKFLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTT 231

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
           + +  GL++        VP  + + +IT ++ ++P  G    F    IY+   G+     
Sbjct: 232 VIVLIGLLI------LRVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGD----- 280

Query: 280 CLFLWGAIELFIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             F  G + L+IV     + + P ++   I L  L T   L  G +  G LGL IGPV++
Sbjct: 281 TAFAIGLLILYIVVIVQRQIMEPKVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVIL 340

Query: 336 ALIAVIWKESI 346
            L+  + K  +
Sbjct: 341 VLLNTLHKARV 351


>gi|308184350|ref|YP_003928483.1| hypothetical protein HPSJM_02870 [Helicobacter pylori SJM180]
 gi|308060270|gb|ADO02166.1| hypothetical protein HPSJM_02870 [Helicobacter pylori SJM180]
          Length = 348

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 15/166 (9%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA-YWLAGVPSHVALGVITAIMAMIPG-GA 258
           KKI   V  ++R   L   I  I EG+  G    W        +LG++  + +++P  G 
Sbjct: 182 KKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFG--HDGWSLGILYGLASLVPAVGG 239

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLV--------GGPIKLPF 309
            + +  ++IY L  GN+  A  + L+  + +  ++D  ++P L+           +K+  
Sbjct: 240 ALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKRIFKTTLKINE 299

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK--ESIMAIKENK 353
           +  FF ++ G+   G  G+ +GP + A    + +  E+    KE K
Sbjct: 300 ILIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQKEQK 345


>gi|301057257|ref|ZP_07198383.1| conserved hypothetical protein [delta proteobacterium NaphS2]
 gi|300448622|gb|EFK12261.1| conserved hypothetical protein [delta proteobacterium NaphS2]
          Length = 358

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 5/129 (3%)

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           +RS   G+  +A+ + ++ G      GVP      ++  I+A+I     I    + +Y  
Sbjct: 218 VRSVARGILGVAMIQSILAGLGCLAVGVPGAGLWALLVLILAVIQLPTFIILAPIVVYAF 277

Query: 271 IKGNIFNATCLFLWGAIELFI--VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
                  A    +W    LF+   D  L+P L+G  + +P L  F G +GG    G++GL
Sbjct: 278 YTTGTVPAVLFAVW---NLFVGGCDSFLKPLLMGRGVDVPMLVVFIGAIGGFILNGIIGL 334

Query: 329 FIGPVLMAL 337
           FIG ++++L
Sbjct: 335 FIGAIILSL 343


>gi|304407564|ref|ZP_07389216.1| protein of unknown function UPF0118 [Paenibacillus curdlanolyticus
           YK9]
 gi|304343515|gb|EFM09357.1| protein of unknown function UPF0118 [Paenibacillus curdlanolyticus
           YK9]
          Length = 356

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 68/336 (20%), Positives = 141/336 (41%), Gaps = 47/336 (13%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV-----SVMCLFIVPLLF 80
           FL+   AP   A+II +   P+ S    +K   +  + +I TV     +V+ +  VP+  
Sbjct: 39  FLRAVLAPFFIAMIISYVLNPVVSLLHVRKMPRTVAVLLIYTVFCGSLTVVLMNAVPMF- 97

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS-ET 139
                M +++EL       N+H   +     ++   +  + L  + +    +  +   E 
Sbjct: 98  -----MEQLQEL-------NRHAPELTVRAQNLVENLNNNSLMPESIRSGINNSLYKMEK 145

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            L  +  DF+    +   ++F      I+F+I  L F+    F + ++  ++  ++  ++
Sbjct: 146 KLSESVFDFVNNIGAMVNVVF------ILFIIPFLAFYILKDFEVFER--TVITYVPKSH 197

Query: 200 WKKISRIVPKV---IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
            ++  R++  +   + S   G  I+ +  G++    YW+ G+P  + L  + AI  +IP 
Sbjct: 198 RQQTVRLLKDIDAALGSYIRGQFIVCLIVGVLAYLGYWIIGMPYPLLLAAVVAITNVIPY 257

Query: 256 -----GGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
                G AP    A  +S+ ++I   + N  C  L            + P +VG  + + 
Sbjct: 258 LGPFIGAAPALLMAATISVKMMILVVVVNTLCQILE--------SNVVSPQVVGRTLHMH 309

Query: 309 FLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWK 343
            L     L+ G    G++G+ +  P+  AL  V+  
Sbjct: 310 PLSIILALLVGGELAGIVGMILAVPIFAALKVVVQH 345


>gi|33593185|ref|NP_880829.1| hypothetical protein BP2180 [Bordetella pertussis Tohama I]
 gi|33563560|emb|CAE42458.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
          Length = 361

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 63/313 (20%), Positives = 133/313 (42%), Gaps = 22/313 (7%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F   +L ++I+  T  P++              AV+ T++ M + +VP       G +  
Sbjct: 42  FIGMLLWSIILAVTLAPLHMRLTRLLGARPRLAAVVLTLATMLVLLVP-------GAMLT 94

Query: 90  KELVSKVVLANQHG------IPVP-RWLSDIPG-GMWASELWTKHLSHPQSLKILSETFL 141
             L   +V    H       IP P  ++ ++P  G+   E+W + +++ Q +    +  L
Sbjct: 95  ASLGDSLVNIFHHSTGRIVRIPAPPDFVIELPLIGVRLHEIWLQAMTNLQDVLKPLQPHL 154

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF-PAYW 200
            T G   +   AS  G+    +  SI   I  +   Y D     +   ++G  +  P   
Sbjct: 155 ATAGRWLLAGMASA-GLGIAVFLASI--AIAGVILVYAD--PAKRAAHAIGVRIAGPEQG 209

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             ++++    IR+   G+  +A+ + ++ G  + LAGVP+     ++  ++ ++     +
Sbjct: 210 VALAQLTAATIRAVAQGVIGVALIQAVLAGLGFLLAGVPAAGLWAIVALLICIVQLPLFL 269

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
               + +Y+ +      A    +W  + + + D  L+P ++   + +P      G +GGV
Sbjct: 270 LMVPMVVYVFLNNTPTVAIVFAVW-CLLVSLCDNVLKPLMLARGVDIPIPVILIGALGGV 328

Query: 321 RTMGLLGLFIGPV 333
              G++GLF+G V
Sbjct: 329 LAAGIVGLFLGSV 341


>gi|261408740|ref|YP_003244981.1| sporulation integral membrane protein YtvI [Paenibacillus sp.
           Y412MC10]
 gi|329930454|ref|ZP_08283994.1| sporulation integral membrane protein YtvI [Paenibacillus sp. HGF5]
 gi|261285203|gb|ACX67174.1| sporulation integral membrane protein YtvI [Paenibacillus sp.
           Y412MC10]
 gi|328934832|gb|EGG31322.1| sporulation integral membrane protein YtvI [Paenibacillus sp. HGF5]
          Length = 343

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 3/86 (3%)

Query: 266 SIYLLIKGNIFNATCL-FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           SIYLL  G+IF    L FL+  I + ++ + L P ++G  + +  LP    +  G + +G
Sbjct: 257 SIYLLAVGDIFTGIGLIFLF--ILITVIRRVLEPKVIGDAVGIGALPALVSMYVGFKLVG 314

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIK 350
           ++G FIGP+++ + + + K  +  IK
Sbjct: 315 VIGFFIGPLVVIIYSAMRKAGLFQIK 340


>gi|301056100|ref|YP_003794311.1| putative transmembrane protein [Bacillus anthracis CI]
 gi|300378269|gb|ADK07173.1| putative transmembrane protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 372

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 85/191 (44%), Gaps = 22/191 (11%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI------RSTFLGMTI 220
           ++F+++A FF   D   ++Q+   L  +    Y K I   + K +      + T + MT 
Sbjct: 179 LVFVLLATFFISYDWHRLAQKARKLLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTT 238

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
           + +  GL++        VP  + + +IT ++ ++P  G    F    IY+   G+     
Sbjct: 239 VIVLIGLLI------LRVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGD----- 287

Query: 280 CLFLWGAIELFIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             F  G + L+IV     + + P ++   I L  L T   L  G +  G LGL IGPV +
Sbjct: 288 TAFAIGLLILYIVVIVQRQIMEPKVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVTL 347

Query: 336 ALIAVIWKESI 346
            L+  + K  +
Sbjct: 348 VLLNTLHKARV 358


>gi|120435935|ref|YP_861621.1| membrane protein, UPF0118 [Gramella forsetii KT0803]
 gi|117578085|emb|CAL66554.1| membrane protein, UPF0118 [Gramella forsetii KT0803]
          Length = 347

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 151/341 (44%), Gaps = 45/341 (13%)

Query: 20  ILVSLYFL-------KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           I+V+ YFL       KGFFAP+++A+I+     P+     S++ E      + A ++ + 
Sbjct: 14  IIVATYFLFLGLTKAKGFFAPMITAVILSLIVLPL-----SQRMERKLKRPLAAILNSLL 68

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           LF++ +      G++    +VS  V +     P  +   + P    A E   +H   P +
Sbjct: 69  LFLISI------GLMA---IVSFQVRSFAEDWPQIKETME-PKIENAKEFALEH--TPLN 116

Query: 133 LKILSETFLKTNGIDFIP-----RFASRFGMIFLDYCLSIIFMIIALFFF--YRDGFS-- 183
            + + E    ++ +D  P      F S       +Y L+ ++    +FF   YR  F   
Sbjct: 117 KQDIEEAKNSSSTMDLQPGKWAKTFMSGLSSFLANYLLTFVY----IFFLLNYRHIFKNF 172

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + +      +        K + + P+ +    + M ++A+   + LG    ++GV + + 
Sbjct: 173 LLRVFPDEKQQTIKTIIVKSAEVAPQYLLGKLILMGLLAVIYSIGLG----ISGVNNFIL 228

Query: 244 LGVITAIMAMIPG-GAPISFT-AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           + VI A++ +IP  G  I F  AV+   L  G+I     + L   I  F+    L+P++V
Sbjct: 229 VSVIAAVLTLIPYIGNVIGFVMAVAFGFLTSGDITVLIGIALTFTITQFVESYVLQPYVV 288

Query: 302 GGPIKL-PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           G  + + PF      ++ G    G++G+ +   +MA+I V+
Sbjct: 289 GERVDVHPFF-VIVSVILGNMVWGVIGMILAIPIMAIITVV 328


>gi|17227738|ref|NP_484286.1| hypothetical protein alr0242 [Nostoc sp. PCC 7120]
 gi|17135220|dbj|BAB77766.1| alr0242 [Nostoc sp. PCC 7120]
          Length = 345

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 23/178 (12%)

Query: 192 GEHLFPAYWKKISRIVPK--------VIRSTFLGMTIIAIGEGLVLGSA----YWLAGVP 239
           GE L    W  I +IVP+        ++R +FLG     +   L L S+    + L  VP
Sbjct: 178 GEKL----WNFILKIVPQKRRIRFTNIMRRSFLGFFRGQLLLCLFLTSSTFIIFLLLQVP 233

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             + L VI  I+ +IPG GA +    +++ +L   +++ A  +     +   I D  + P
Sbjct: 234 FALILSVIVGILDIIPGIGATLGVGTITLIVL-SQDVWLALKVLAACVVLQQIQDNLISP 292

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            ++ G + L  +  FF L+ G R  GLLG+FI   +  +I      S+  I E K ++
Sbjct: 293 RIMQGSLNLNPVVVFFALLVGARVAGLLGVFISIPITGVIV-----SLFEIDEMKSEV 345


>gi|317009456|gb|ADU80036.1| outer membrane protein [Helicobacter pylori India7]
          Length = 348

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 74/166 (44%), Gaps = 13/166 (7%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA-YWLAGVPSHVALGVITAIMAMIPG-GA 258
           KKI   V  ++R   L   I  I EG+  G    W        +LG++  + +++P  G 
Sbjct: 182 KKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFG--HDGWSLGILYGLASLVPAVGG 239

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLV--------GGPIKLPF 309
            + +  ++IY L  GN+  A  + L+  + +  ++D  ++P L+           +K+  
Sbjct: 240 ALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKRIFKTTLKINE 299

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 300 MLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345


>gi|208434487|ref|YP_002266153.1| membrane protein [Helicobacter pylori G27]
 gi|208432416|gb|ACI27287.1| membrane protein [Helicobacter pylori G27]
          Length = 348

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 74/166 (44%), Gaps = 13/166 (7%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA-YWLAGVPSHVALGVITAIMAMIPG-GA 258
           KKI   V  ++R   L   I  I EG+  G    W        +LG++  + +++P  G 
Sbjct: 182 KKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFG--HDGWSLGILYGLASLVPAVGG 239

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLV--------GGPIKLPF 309
            + +  ++IY L  GN+  A  + L+  + +  ++D  ++P L+           +K+  
Sbjct: 240 ALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKRIFKTTLKINE 299

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 300 MLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345


>gi|317180338|dbj|BAJ58124.1| membrane protein [Helicobacter pylori F32]
          Length = 348

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 74/166 (44%), Gaps = 13/166 (7%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA-YWLAGVPSHVALGVITAIMAMIPG-GA 258
           KKI   V  ++R   L   I  I EG+  G    W        +LG++  + +++P  G 
Sbjct: 182 KKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFG--HDGWSLGILYGLASLVPAVGG 239

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLV--------GGPIKLPF 309
            + +  ++IY L  GN+  A  + L+  + +  ++D  ++P L+           +K+  
Sbjct: 240 ALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKRIFKTTLKINE 299

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 300 MLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345


>gi|210134768|ref|YP_002301207.1| outer membrane protein [Helicobacter pylori P12]
 gi|210132736|gb|ACJ07727.1| outer membrane protein [Helicobacter pylori P12]
          Length = 348

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 74/166 (44%), Gaps = 13/166 (7%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA-YWLAGVPSHVALGVITAIMAMIPG-GA 258
           KKI   V  ++R   L   I  I EG+  G    W        +LG++  + +++P  G 
Sbjct: 182 KKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFG--HDGWSLGILYGLASLVPAVGG 239

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLV--------GGPIKLPF 309
            + +  ++IY L  GN+  A  + L+  + +  ++D  ++P L+           +K+  
Sbjct: 240 ALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKRIFKTTLKINE 299

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 300 MLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345


>gi|153808650|ref|ZP_01961318.1| hypothetical protein BACCAC_02949 [Bacteroides caccae ATCC 43185]
 gi|149128476|gb|EDM19694.1| hypothetical protein BACCAC_02949 [Bacteroides caccae ATCC 43185]
          Length = 377

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 144/350 (41%), Gaps = 36/350 (10%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L G   P   A +I +  +P+   F  K +  S  ++++  + ++ +  V L +L    M
Sbjct: 31  LSGVLLPFFIAWLIAYMVYPLVKFFQYKLKLKSRIVSILCALFLITVVGVSLFYLLVPPM 90

Query: 87  L-EMKELVSKVV--LANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
           + E+  +   +V  L N  G  VP+ LS         E   +++      +ILSE  +  
Sbjct: 91  ISEISRMNDLLVTYLTNGAGNNVPQNLS---------EFIHENIDLQALNRILSEENILA 141

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE---HLFPAYW 200
              D +PR  +      L   L+I+F I+A F        I    +++ E   HL P  +
Sbjct: 142 AIKDTVPRMWA-----LLAESLNILFSILASFIILLYVIFILLDYEAIAEGWLHLLPNKY 196

Query: 201 KKI-SRIVPKV---IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
           +   S +V  V   +   F G  ++A   G++    + +   P  +ALG+    + M+P 
Sbjct: 197 RTFASNLVHDVQDGMNRYFRGQALVAFCVGILFSIGFLIIDFPMAIALGLFIGALNMVPY 256

Query: 257 GAPISFTAVSIYLLIKGN-------IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
              I F    +  ++K         I  A  L ++  +++ I D  L P ++G    L  
Sbjct: 257 LQIIGFLPTVLLAILKAADTGQNFWIIIACALAVFAIVQI-IQDTFLVPKIMGKITGLNP 315

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                 L      MG+LG+ I   L  L+   ++  I+    NKEKI  +
Sbjct: 316 AIILLSLSIWGSLMGMLGMIIALPLTTLMLSYYQRFII----NKEKIKYD 361


>gi|229076099|ref|ZP_04209067.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock4-18]
 gi|229099057|ref|ZP_04229991.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock3-29]
 gi|229118087|ref|ZP_04247446.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock1-3]
 gi|228665310|gb|EEL20793.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock1-3]
 gi|228684285|gb|EEL38229.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock3-29]
 gi|228706962|gb|EEL59167.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock4-18]
          Length = 346

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 85/191 (44%), Gaps = 22/191 (11%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI------RSTFLGMTI 220
           ++F+++A FF   D   ++Q+   L  +    Y K I   + K +      + T + MT 
Sbjct: 151 LVFILLATFFISYDWHRLAQKARKLLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTT 210

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
           + +  GL++        VP  + + +IT ++ ++P  G    F    IY+   G+     
Sbjct: 211 VIVLIGLLI------LRVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGD----- 259

Query: 280 CLFLWGAIELFIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             F  G + L+IV     + + P ++   I L  L T   L  G +  G LGL IGPV +
Sbjct: 260 TAFAIGLLILYIVVIVQRQIMEPKVLSSNIGLDPLATLVALFIGFKLFGFLGLIIGPVTL 319

Query: 336 ALIAVIWKESI 346
            L+  + K  +
Sbjct: 320 VLLNTLHKAHV 330


>gi|217032380|ref|ZP_03437875.1| hypothetical protein HPB128_25g28 [Helicobacter pylori B128]
 gi|298736258|ref|YP_003728784.1| hypothetical protein HPB8_763 [Helicobacter pylori B8]
 gi|216945947|gb|EEC24563.1| hypothetical protein HPB128_25g28 [Helicobacter pylori B128]
 gi|298355448|emb|CBI66320.1| conserved hypothetical membrane protein [Helicobacter pylori B8]
 gi|317012381|gb|ADU82989.1| hypothetical protein HPLT_02815 [Helicobacter pylori Lithuania75]
          Length = 348

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 74/166 (44%), Gaps = 13/166 (7%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA-YWLAGVPSHVALGVITAIMAMIPG-GA 258
           KKI   V  ++R   L   I  I EG+  G    W        +LG++  + +++P  G 
Sbjct: 182 KKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFG--HDGWSLGILYGLASLVPAVGG 239

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLV--------GGPIKLPF 309
            + +  ++IY L  GN+  A  + L+  + +  ++D  ++P L+           +K+  
Sbjct: 240 ALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKRIFKTTLKINE 299

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 300 MLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345


>gi|30264667|ref|NP_847044.1| hypothetical protein BA_4841 [Bacillus anthracis str. Ames]
 gi|47530136|ref|YP_021485.1| hypothetical protein GBAA_4841 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|65321963|ref|ZP_00394922.1| COG0628: Predicted permease [Bacillus anthracis str. A2012]
 gi|30259342|gb|AAP28530.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           Ames]
 gi|47505284|gb|AAT33960.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           'Ames Ancestor']
          Length = 365

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 22/191 (11%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI------RSTFLGMTI 220
           ++F+++A FF   D   ++Q++     +    Y K I   + K +      + T + MT 
Sbjct: 172 LVFVLLATFFISNDWHRLAQKVRKFLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTT 231

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
           + +  GL++        VP  + + +IT ++ ++P  G    F    IY+   G+     
Sbjct: 232 VIVLIGLLI------LRVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGD----- 280

Query: 280 CLFLWGAIELFIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             F  G + L+IV     + + P ++   I L  L T   L  G +  G LGL IGPV +
Sbjct: 281 TAFAIGLLILYIVVIVQRQIMEPKVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVTL 340

Query: 336 ALIAVIWKESI 346
            L+  + K  +
Sbjct: 341 VLLNTLHKARV 351


>gi|160885072|ref|ZP_02066075.1| hypothetical protein BACOVA_03070 [Bacteroides ovatus ATCC 8483]
 gi|156109422|gb|EDO11167.1| hypothetical protein BACOVA_03070 [Bacteroides ovatus ATCC 8483]
          Length = 374

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 147/368 (39%), Gaps = 36/368 (9%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G +  M++  IL+ +  L G   P   A +I +  +P+   F  K    S  +++  ++
Sbjct: 13  RGSIGCMLVVGILMLVERLSGVLLPFFIAWLIAYMVYPLVKFFQYKLRLKSRIISIFCSL 72

Query: 69  SVMCLFIVPLLFLFYYGML----EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            ++ +  V L +L    M+     M +L+    L N  G  VP+ LS         E   
Sbjct: 73  FLITVIGVTLFYLLVPPMISEIGRMNDLLVTY-LTNGAGNNVPKNLS---------EFIH 122

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +++      ++LSE  +     D +PR  +      L   L+I+F I+A F        I
Sbjct: 123 ENIDLQALNRVLSEENILAAIKDTVPRVWT-----LLAESLNILFSILASFIILLYVIFI 177

Query: 185 SQQLDSLGE---HLFPAYWKKI-SRIVPKV---IRSTFLGMTIIAIGEGLVLGSAYWLAG 237
               +++ E   HL P  ++   S +V  V   +   F G  ++A   G++    + +  
Sbjct: 178 LLDYEAIAEGWLHLLPNKYRTFASNLVHDVQDGMNRYFRGQALVAFCVGILFSIGFLIID 237

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNAT------CLFLWGAIELFI 291
            P  +ALG+    + M+P    I F    +  ++K             C     AI   I
Sbjct: 238 FPMAIALGLFIGALNMVPYLQIIGFLPTILLAILKAADTGQNFWIIIACALAVFAIVQII 297

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            D  L P ++G    L        L      MG+LG+ I   L  L+   ++  I+    
Sbjct: 298 QDTFLVPKIMGKITGLNPAIILLSLSIWGSLMGMLGMIIALPLTTLMLSYYQRFII---- 353

Query: 352 NKEKISSN 359
           NKEKI  +
Sbjct: 354 NKEKIKYD 361


>gi|325697596|gb|EGD39481.1| permease [Streptococcus sanguinis SK160]
          Length = 366

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 112/259 (43%), Gaps = 15/259 (5%)

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           V +WL    G + +S+L  K L+     K L  + +    I  +         IF ++  
Sbjct: 117 VAKWLQQ-SGLLSSSQL--KDLT-----KQLQNSDIVNRAISLLGSLTGNISAIFGNF-F 167

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF----LGMTII 221
           S+I  I  +F F      +      L + L P    K    V  VI  T+    +G  I 
Sbjct: 168 SVIMSIFLMFAFLSSKEHLQTITSRLLQVLLPEKAVKRLSYVGSVIVETYDKFLMGQMIE 227

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA-TC 280
           A+  G+++  AY L G+P     GV+  +++ IP   P S  A+    +   + + A   
Sbjct: 228 AVIVGVLVFIAYSLTGLPYAALTGVLAGVLSFIPYIGPFSACALGAIFIFTDSPWKALLS 287

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           + ++  ++L I    + P +VG  + LP L T    + G    GL+G+     + A+I  
Sbjct: 288 IAVFQGVQL-IEGNVIYPRVVGQSVGLPTLFTLAAALIGGNLFGLVGMIFFTPIFAVIYR 346

Query: 341 IWKESIMAIKENKEKISSN 359
           + +E ++  +E K + S++
Sbjct: 347 LVREFVVEKEEKKAEGSAS 365


>gi|308182723|ref|YP_003926850.1| membrane protein [Helicobacter pylori PeCan4]
 gi|308064908|gb|ADO06800.1| membrane protein [Helicobacter pylori PeCan4]
          Length = 349

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 74/166 (44%), Gaps = 13/166 (7%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA-YWLAGVPSHVALGVITAIMAMIPG-GA 258
           KKI   V  ++R   L   I  I EG+  G    W        +LG++  + +++P  G 
Sbjct: 182 KKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFG--HDGWSLGILYGLASLVPAVGG 239

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLV--------GGPIKLPF 309
            + +  ++IY L  GN+  A  + L+  + +  ++D  ++P L+           +K+  
Sbjct: 240 ALIWIPITIYELYHGNVNEAIFITLYSILLISVLIDSVIKPILIVFIKKRIFKTTLKINE 299

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 300 MLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345


>gi|328945816|gb|EGG39967.1| permease [Streptococcus sanguinis SK1087]
          Length = 360

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 108/254 (42%), Gaps = 15/254 (5%)

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           V +WL    G + +S+L  K L+     K L  + +    I  +         IF ++  
Sbjct: 117 VAKWLQQ-SGLLSSSQL--KDLT-----KQLQNSDIVNRAISLLGSLTGNISAIFGNF-F 167

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF----LGMTII 221
           S+I  I  +F F      +      L + L P    K    V  VI  T+    +G  I 
Sbjct: 168 SVIMSIFLMFAFLSSKEHLQTITSRLLQVLLPEKAVKRLSYVGSVIVETYDKFLMGQMIE 227

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA-TC 280
           A+  G+++  AY L G+P     GV+  +++ IP   P S  A+    +   + + A   
Sbjct: 228 AVIVGILVFIAYSLTGLPYAALTGVLAGVLSFIPYIGPFSACALGAIFIFTDSPWKALLS 287

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           + ++  ++L I    + P +VG  + LP L T    + G    GL+G+     + A+I  
Sbjct: 288 IAVFQGVQL-IEGNVIYPRVVGQSVGLPTLFTLAAALIGGNLFGLVGMIFFTPIFAVIYR 346

Query: 341 IWKESIMAIKENKE 354
           + +E ++  +E K 
Sbjct: 347 LVREFVVEKEEKKR 360


>gi|260549333|ref|ZP_05823553.1| permease [Acinetobacter sp. RUH2624]
 gi|260407739|gb|EEX01212.1| permease [Acinetobacter sp. RUH2624]
          Length = 397

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 119/274 (43%), Gaps = 40/274 (14%)

Query: 111 SDIPGGM-W-ASEL--WTKHLSHPQSLKILSE-------TFLKTN----GIDFIPRFASR 155
             IP G+ W  +EL  W     H Q ++I ++        +++TN     I  +    ++
Sbjct: 91  DSIPAGIHWINAELLPWISSTFHVQQMEIDTDQMSKAVMDYVQTNYSADSIQAVLLKLAQ 150

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
            G+ F+    +++ + I  F+F  D   + Q L  L    + A   +I R    V+ +  
Sbjct: 151 SGLNFIQIGGTLVLIPIIAFYFLLDWDRMLQNLRRLIPRPYEATTLQIVRECHSVLGAFV 210

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP------------GGAPISFT 263
            G  ++ +  G+V      L G+   + +G++  + ++IP              +   F 
Sbjct: 211 KGQFLVMLLLGVVYAVGLQLIGLEVGLIIGMVAGLASIIPYLGFAVGIIAAIIASLFQFG 270

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
               +LL+ G +F      +  A+E +I    L+PFL+G  I L  +   F ++ G +  
Sbjct: 271 MDWTHLLLVGVVF-----MIGQAVEGYI----LQPFLLGDKIGLSPVAVVFAVLAGAQLA 321

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           G LG+ I   + A+I V+ K     +++N EK S
Sbjct: 322 GFLGMLIALPVAAVIVVLLKH----LRDNYEKSS 351


>gi|258510443|ref|YP_003183877.1| sporulation integral membrane protein YtvI [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477169|gb|ACV57488.1| sporulation integral membrane protein YtvI [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 375

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 21/123 (17%)

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT---AIMAMIPGGAPISFTAVSIYLLIK 272
           +GM ++     ++LG  + LAG+   V   ++T   AI+A+I G   ++   +++ ++I 
Sbjct: 238 IGMFVLGFPYAILLGILFGLAGLVPIVGSAILTVPWAIVALITGHVAVAIKVLALQVVIS 297

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
                             I+   + P ++   + L  L T FGL  G + MG +GLFIGP
Sbjct: 298 ------------------IIRHAVEPKILADSVGLDTLATLFGLYVGFKVMGFIGLFIGP 339

Query: 333 VLM 335
           +L+
Sbjct: 340 ILL 342


>gi|15611581|ref|NP_223232.1| hypothetical protein jhp0514 [Helicobacter pylori J99]
 gi|8928476|sp|Q9ZLR4|Y567_HELPJ RecName: Full=UPF0118 membrane protein jhp_0514
 gi|4155053|gb|AAD06090.1| putative Inner membrane protein [Helicobacter pylori J99]
          Length = 349

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 76/165 (46%), Gaps = 13/165 (7%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           KKI   V  ++R   L   I  I EG+  G+     G     +LG++  + +++P  G  
Sbjct: 182 KKIFEEVAGILRIVLLTSLITVILEGVAFGTMIIWFGHDGW-SLGILYGLASLVPAVGGA 240

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLV--------GGPIKLPFL 310
           + +  ++IY L  G++  A  + L+  + +  ++D  ++P L+           +K+  +
Sbjct: 241 LIWIPIAIYELYHGHVNEAIFIVLYSILLIGVLIDSVIKPILIVFIKKRIFKTTLKINEI 300

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK--ESIMAIKENK 353
             FF ++ G+   G  G+ +GP + A    + +  E+    KE K
Sbjct: 301 LIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQKEQK 345


>gi|229163588|ref|ZP_04291537.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           R309803]
 gi|228619838|gb|EEK76715.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           R309803]
          Length = 365

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 85/191 (44%), Gaps = 22/191 (11%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI------RSTFLGMTI 220
           ++F+++A FF   D   ++Q+   L  +    Y K I   + K +      + T + MT 
Sbjct: 172 LVFVLLATFFISYDWHRLAQKARKLLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTT 231

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
           + +  GL++        VP  + + +IT ++ ++P  G    F    IY+   G+     
Sbjct: 232 VIVLIGLLI------LRVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGD----- 280

Query: 280 CLFLWGAIELFIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             F  G + L+IV     + + P ++   I L  L T   L  G +  G LGL IGPV +
Sbjct: 281 TAFAIGLLILYIVVIVQRQIMEPKVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVTL 340

Query: 336 ALIAVIWKESI 346
            L+  + K  +
Sbjct: 341 VLLNTLHKAHV 351


>gi|323144594|ref|ZP_08079182.1| hypothetical protein HMPREF9444_01862 [Succinatimonas hippei YIT
           12066]
 gi|322415603|gb|EFY06349.1| hypothetical protein HMPREF9444_01862 [Succinatimonas hippei YIT
           12066]
          Length = 358

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 64/129 (49%), Gaps = 1/129 (0%)

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIY 268
           ++RS  +G+ ++A+ +G+V    Y L GV + +  GV+T   ++IP  G  I +  + I 
Sbjct: 191 IVRSNAIGIPLLAVIQGVVATIGYMLCGVNNALLFGVLTGFASIIPIVGTMIVWIPLVIG 250

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
               G++ +   L  +    +   D  +R  L         L T FG++ G+   G +G+
Sbjct: 251 QYFDGSLLSTLGLAFYCIAIISQCDNVIRMILQKRMANTHPLITIFGVIAGLPIFGFMGV 310

Query: 329 FIGPVLMAL 337
             GP+++++
Sbjct: 311 IFGPLIVSM 319


>gi|254779441|ref|YP_003057546.1| hypothetical protein HELPY_0810 [Helicobacter pylori B38]
 gi|254001352|emb|CAX29337.1| Conserved hypothetical protein; putative membrane protein
           [Helicobacter pylori B38]
          Length = 348

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 74/166 (44%), Gaps = 13/166 (7%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA-YWLAGVPSHVALGVITAIMAMIPG-GA 258
           KKI   V  ++R   L   I  I EG+  G    W        +LG++  + +++P  G 
Sbjct: 182 KKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFG--HDGWSLGILYGLASLVPAVGG 239

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLV--------GGPIKLPF 309
            + +  ++IY L  GN+  A  + L+  + +  ++D  ++P L+           +K+  
Sbjct: 240 ALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKRIFKTTLKINE 299

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 300 MLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345


>gi|253997588|ref|YP_003049652.1| hypothetical protein Mmol_2223 [Methylotenera mobilis JLW8]
 gi|253984267|gb|ACT49125.1| protein of unknown function UPF0118 [Methylotenera mobilis JLW8]
          Length = 360

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 107/236 (45%), Gaps = 15/236 (6%)

Query: 131 QSLKILSETFLKTNGIDFIPRFA---SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           Q   IL+E + KT G +F    A   S  GM  + +  +++ + + LF+   D   + Q+
Sbjct: 131 QIQAILTENW-KTTG-NFAKNIALSLSSHGMTIIGWLGNVVLIPLVLFYLLVDWNILLQK 188

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + +L         ++I+  +  V+     G   + +   +   +  WL G+   + +G++
Sbjct: 189 ISTLLPRSLIGKTQEIAADIDAVLAEFLRGQLTVMLLMSVFYATGLWLVGLEFALPIGIL 248

Query: 248 TAIMAMIPG---GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           + ++  IP    G  ++  A+S  +L  GN+ +   + +   I   +    L P+LVG  
Sbjct: 249 SGLLGFIPYLGFGLGLTLAAIS-GVLQYGNLNDLIPVLIVFGIGQLVESMALTPWLVGDR 307

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           I L  L   F L+ G +  G  G+ +   + A IAV ++ +       ++ +SS+F
Sbjct: 308 IGLHPLVVIFALMAGGQLFGFAGILLALPVSAAIAVGFRHA------KQKYLSSHF 357


>gi|317181882|dbj|BAJ59666.1| membrane protein [Helicobacter pylori F57]
          Length = 349

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 74/166 (44%), Gaps = 13/166 (7%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLG-SAYWLAGVPSHVALGVITAIMAMIPG-GA 258
           KKI   V  ++R   L   I  I EG+  G    W        +LG++  + +++P  G 
Sbjct: 182 KKIFEEVAGILRIVLLTSLITVILEGVAFGLMIVWFG--HDGWSLGILYGLASLVPAVGG 239

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLV--------GGPIKLPF 309
            + +  ++IY L  GN+  A  + L+  + +  ++D  ++P L+           +K+  
Sbjct: 240 ALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKRIFKTTLKINE 299

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 300 MLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345


>gi|261838190|gb|ACX97956.1| outer membrane protein [Helicobacter pylori 51]
 gi|317179069|dbj|BAJ56857.1| membrane protein [Helicobacter pylori F30]
          Length = 348

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 74/166 (44%), Gaps = 13/166 (7%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLG-SAYWLAGVPSHVALGVITAIMAMIPG-GA 258
           KKI   V  ++R   L   I  I EG+  G    W        +LG++  + +++P  G 
Sbjct: 182 KKIFEEVAGILRIVLLTSLITVILEGVAFGLMIVWFG--HDGWSLGILYGLASLVPAVGG 239

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLV--------GGPIKLPF 309
            + +  ++IY L  GN+  A  + L+  + +  ++D  ++P L+           +K+  
Sbjct: 240 ALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKRIFKTTLKINE 299

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 300 MLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345


>gi|255693730|ref|ZP_05417405.1| putative membrane protein [Bacteroides finegoldii DSM 17565]
 gi|260620481|gb|EEX43352.1| putative membrane protein [Bacteroides finegoldii DSM 17565]
          Length = 377

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 141/355 (39%), Gaps = 36/355 (10%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           IL+ +  L G   P   A +I +  +P+   F  K    S  L++   + ++    V + 
Sbjct: 24  ILMLIERLSGVLLPFFIAWLIAYMIYPLVKLFQYKLRLKSRILSIFCALFLISAIGVTVF 83

Query: 80  FLFYYGML-EMKELVSKVV--LANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
           +L    M+ EM  +   +V  L N  G  VP+ LS         E   +++      +IL
Sbjct: 84  YLLVPPMISEMSRMNDLLVTYLTNGAGNNVPKNLS---------EFIHEYVDLQALNRIL 134

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE--- 193
           SE  +     D +PR  +      L   L+I+F I   F        I    +++ E   
Sbjct: 135 SEENILAAIKDTVPRLWT-----LLAESLNILFSIFTSFIILLYVVFILLDYEAIAEGWL 189

Query: 194 HLFPAYWK----KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           HL P  ++     + R V   +   F G  ++A   G++    + +   P  +ALG+   
Sbjct: 190 HLLPNKYRTFASNLVRDVQDGMNKYFRGQALVAFCVGILFSIGFLIIDFPMAIALGLFIG 249

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGN-------IFNATCLFLWGAIELFIVDKTLRPFLVG 302
            + M+P    I F    +  ++K         I  A  L ++  +++ I D  L P ++G
Sbjct: 250 ALNMVPYLQIIGFFPTVLLAILKAADTGENFWIIIACALAVFAVVQI-IQDTFLVPKIMG 308

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
               L        L      MG+LG+ I   L  L+   ++  I+    NKEKI 
Sbjct: 309 KITGLNPAIILLSLSIWGSLMGMLGMIIALPLTTLMLSYYQRFII----NKEKIK 359


>gi|315648858|ref|ZP_07901953.1| sporulation integral membrane protein YtvI [Paenibacillus vortex
           V453]
 gi|315275826|gb|EFU39178.1| sporulation integral membrane protein YtvI [Paenibacillus vortex
           V453]
          Length = 343

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 49/86 (56%), Gaps = 3/86 (3%)

Query: 266 SIYLLIKGNIFNATCL-FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           S+YLL  G++F    L FL+  I + ++ + L P ++G  + +  LP    +  G + +G
Sbjct: 257 SVYLLATGDVFTGLGLIFLF--ILITVIRRVLEPKVIGDAVGIGALPALVSMYVGFKLVG 314

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIK 350
           ++G FIGP+++ + + + K  +  IK
Sbjct: 315 VIGFFIGPLVVIIYSAMRKAGLFQIK 340


>gi|325688460|gb|EGD30478.1| toxin secretion/phage lysis holin subfamily [Streptococcus
           sanguinis SK72]
          Length = 360

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 103/253 (40%), Gaps = 13/253 (5%)

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           V +WL    G + +S+L  K L+     K L  + +    I  +         IF ++  
Sbjct: 117 VAKWLQQ-SGLLSSSQL--KDLT-----KQLQNSDIVNRAISLLGSLTGNISAIFGNF-F 167

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF----LGMTII 221
           S+I  I  +F F      +      L + L P    K    V  VI  T+    +G  I 
Sbjct: 168 SVIMSIFLMFAFLSSKEHLQTITSRLLQVLLPEKAVKRLSYVGSVIVETYDKFLMGQMIE 227

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL 281
           A+  G+++  AY L G+P     GV+  +++ IP   P S  A+    +   + + A   
Sbjct: 228 AVIVGVLVFIAYSLTGLPYAALTGVLAGVLSFIPYIGPFSACALGAIFIFTDSPWKALLS 287

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                +   I    + P +VG  + LP L T    + G    GL+G+     + A+I  +
Sbjct: 288 IAVFQVVQLIEGNVIYPRVVGQSVGLPTLFTLAAALIGGNLFGLVGMIFFTPIFAVIYRL 347

Query: 342 WKESIMAIKENKE 354
            +E ++  +E K 
Sbjct: 348 VREFVVEKEEKKR 360


>gi|323353414|ref|ZP_08087947.1| permease [Streptococcus sanguinis VMC66]
 gi|322121360|gb|EFX93123.1| permease [Streptococcus sanguinis VMC66]
          Length = 365

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 108/254 (42%), Gaps = 15/254 (5%)

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           V +WL    G + +S+L  K L+     K L  + +    I  +         IF ++  
Sbjct: 117 VAKWLQQ-SGLLSSSQL--KDLT-----KQLQNSDIVNRAISLLGSLTGNISAIFGNF-F 167

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF----LGMTII 221
           S+I  I  +F F      +      L + L P    K    V  VI  T+    +G  I 
Sbjct: 168 SVIMSIFLMFAFLSSKEHLQTITSRLLQVLLPEKAVKRLSYVGSVIVETYDKFLMGQMIE 227

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA-TC 280
           A+  G+++  AY L G+P     GV+  +++ IP   P S  A+    +   + + A   
Sbjct: 228 AVIVGILVFIAYSLTGLPYAALTGVLAGVLSFIPYIGPFSACALGAIFIFTDSPWKALLS 287

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           + ++  ++L I    + P +VG  + LP L T    + G    GL+G+     + A+I  
Sbjct: 288 IAVFQGVQL-IEGNVIYPRVVGQSVGLPTLFTLAAALIGGNLFGLVGMIFFTPIFAVIYR 346

Query: 341 IWKESIMAIKENKE 354
           + +E ++  +E  E
Sbjct: 347 LVREFVVEKEERNE 360


>gi|317177600|dbj|BAJ55389.1| membrane protein [Helicobacter pylori F16]
          Length = 348

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 74/166 (44%), Gaps = 13/166 (7%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLG-SAYWLAGVPSHVALGVITAIMAMIPG-GA 258
           KKI   V  ++R   L   I  I EG+  G    W        +LG++  + +++P  G 
Sbjct: 182 KKIFEEVAGILRIVLLTSLITVILEGVAFGLMIVWFG--HDGWSLGILYGLASLVPAVGG 239

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLV--------GGPIKLPF 309
            + +  ++IY L  GN+  A  + L+  + +  ++D  ++P L+           +K+  
Sbjct: 240 ALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKRIFKTTLKINE 299

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 300 MLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345


>gi|315037883|ref|YP_004031451.1| permease [Lactobacillus amylovorus GRL 1112]
 gi|325956356|ref|YP_004291768.1| permease [Lactobacillus acidophilus 30SC]
 gi|312276016|gb|ADQ58656.1| putative permease [Lactobacillus amylovorus GRL 1112]
 gi|325332921|gb|ADZ06829.1| permease [Lactobacillus acidophilus 30SC]
 gi|327183175|gb|AEA31622.1| permease [Lactobacillus amylovorus GRL 1118]
          Length = 400

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 79/187 (42%), Gaps = 10/187 (5%)

Query: 164 CLSIIFMIIA--------LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
            +SII M++         LFF  +DG  +   +       +   + K+   +   + S  
Sbjct: 178 AVSIITMVVMTLITAPFILFFMLKDGHQLRPYITKFAPEKWQPSFSKLLYDINYALASYI 237

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGN 274
            G   +A   G++    Y + G+P   AL ++   + +IP  G PI+   V +  ++   
Sbjct: 238 RGQITVAFWVGVMFAIGYSVVGLPYGAALAILAGFLNLIPYFGTPIALIPVIVIAIMTSG 297

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
                 L ++  IE  I  + L P ++G  + +  + T   L+G     GL G+  G  +
Sbjct: 298 SMLVKVLVVF-VIEQTIETRVLSPLVMGNKMAMHPVTTILLLIGASSVWGLWGVIFGIPI 356

Query: 335 MALIAVI 341
            A++ +I
Sbjct: 357 YAILKII 363


>gi|254508228|ref|ZP_05120352.1| hypothetical protein VPMS16_2375 [Vibrio parahaemolyticus 16]
 gi|219548845|gb|EED25846.1| hypothetical protein VPMS16_2375 [Vibrio parahaemolyticus 16]
          Length = 359

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 155/355 (43%), Gaps = 48/355 (13%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +   ++ A II    +PI+     K        ++++ V +  + +VPLLF+F       
Sbjct: 28  YINSIVMAFIISLLMFPIHEWIEKKLPNHPNISSLLSCVVLTFIIVVPLLFVF------- 80

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS--ETFLKTNGID 147
             +V +    +Q+   V +W++   GG+           HP  +K LS   T+L  + ++
Sbjct: 81  AAIVQQGSAFSQN---VYQWVTH--GGI------QTLFEHPWVVKGLSLVNTYLPFDTVE 129

Query: 148 ------FIPRFASRFGMIFL-----------DYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                  + +FA+ FG   +           ++ +    M+  LFF  RD      ++ S
Sbjct: 130 PQEIAQKVGQFATTFGSNLVGISAKILGDATNFLMDFFLMLFVLFFLLRD----HDKIIS 185

Query: 191 LGEHLFP---AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              H+ P   +   K+   V +V +S  +G  + AI +G+  G   WLAG P  +  G +
Sbjct: 186 AIRHILPLSRSQEDKLLDEVEQVSKSAVMGSFLTAIAQGIAGGIGMWLAGFPG-LFWGTM 244

Query: 248 TAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV--GGP 304
               + IP  G  + +   ++YL + G+   A  L +W    +  +D  LRP L+   G 
Sbjct: 245 MGFASFIPVVGTALIWIPATVYLYLTGDSTWAIFLAIWSIAIVGSIDNLLRPLLMQGSGN 304

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             +  L  FF L+GG+   GL+GL  GP++ A+  V++       K+  ++   N
Sbjct: 305 AGMSTLMIFFSLLGGLHLFGLIGLIYGPLIFAVTMVLFNIYEEEFKDFLDRQDQN 359


>gi|22297616|ref|NP_680863.1| hypothetical protein tll0072 [Thermosynechococcus elongatus BP-1]
 gi|22293793|dbj|BAC07625.1| tll0072 [Thermosynechococcus elongatus BP-1]
          Length = 395

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 63/306 (20%), Positives = 130/306 (42%), Gaps = 36/306 (11%)

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           FL  +  ++++ L +VP LF       + ++L++++          P W +     +   
Sbjct: 87  FLLALVLIAIIALVVVPNLFN------QAQQLIARL----------PEWFNSSQRRLLEF 130

Query: 121 ELWTKHLSHPQSLKI--LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             W   L+ P ++ +  L+   L+    D +   A     + L    S + ++I L    
Sbjct: 131 GQWVDSLNLPVTVDVDALANQLLEKLK-DQLQSLAREALNLILGTLSSAVDVLINLILTV 189

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR----STFLGMTIIAIGEGLVLGSAYW 234
              F + Q  D L   L       +   V + IR    S F+G  ++ +  G+ L + + 
Sbjct: 190 VLTFYLLQHGDELWNGLLSWLPNTVRPTVSETIRRSFESYFIGQLVLGLCMGIGLTTIFI 249

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFI 291
              VP  +  GVI  +MA++P G  +   ++S+ + ++    ++  A   FL+       
Sbjct: 250 FLKVPYGLLFGVIIGVMALVPFGGTVGIISISLLVALQDVWLSLKVAGFAFLYQQ----F 305

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           ++  + P ++G    L  +  F  ++ G R  GL+G+ I       IAV+ K  +++++ 
Sbjct: 306 LENVVAPRIIGSFTGLNPVWVFLAILTGARASGLVGVLIA----VPIAVVIKTFLVSVRS 361

Query: 352 --NKEK 355
             N E+
Sbjct: 362 RLNSEE 367


>gi|315586748|gb|ADU41129.1| membrane protein [Helicobacter pylori 35A]
          Length = 348

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 74/167 (44%), Gaps = 15/167 (8%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA-YWLAGVPSHVALGVITAIMAMIPG-GA 258
           KKI   V  ++R   L   I  I EG+  G+   W        +LG++  + +++P  G 
Sbjct: 182 KKIFEEVAGILRIVLLTSLITVILEGVAFGAMIVWFG--HDGWSLGILYGLASLVPAVGG 239

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELF--IVDKTLRPFLV--------GGPIKLP 308
            + +  ++IY L  GN+ N T      +I L   ++D  ++P L+           +K+ 
Sbjct: 240 ALIWIPIAIYELYHGNV-NETIFIALYSILLISVLIDSVIKPILIVFIKKRIFKTTLKIN 298

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 299 EMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345


>gi|317013986|gb|ADU81422.1| hypothetical protein HPGAM_02910 [Helicobacter pylori Gambia94/24]
          Length = 349

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 76/165 (46%), Gaps = 13/165 (7%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           KKI   V  ++R   L   I  I EG+  G+     G     +LG++  + +++P  G  
Sbjct: 182 KKIFEEVAGILRIVLLTSLITVILEGVAFGAMIIWFGHDGW-SLGILYGLASLVPAVGGA 240

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLV--------GGPIKLPFL 310
           + +  ++IY L  G++  A  + L+  + +  ++D  ++P L+           +K+  +
Sbjct: 241 LIWIPIAIYELYHGHVNEAIFIVLYSILLIGVLIDSVIKPILIVFIKKRIFKTTLKINEI 300

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK--ESIMAIKENK 353
             FF ++ G+   G  G+ +GP + A    + +  E+    KE K
Sbjct: 301 LIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQKEQK 345


>gi|229105224|ref|ZP_04235873.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock3-28]
 gi|228678150|gb|EEL32378.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock3-28]
          Length = 367

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 85/191 (44%), Gaps = 22/191 (11%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI------RSTFLGMTI 220
           ++F+++A FF   D   ++Q+   L  +    Y K I   + K +      + T + MT 
Sbjct: 172 LVFILLATFFISYDWHRLAQKARKLLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTT 231

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
           + +  GL++        VP  + + +IT ++ ++P  G    F    IY+   G+     
Sbjct: 232 VIVLIGLLI------LRVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGD----- 280

Query: 280 CLFLWGAIELFIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             F  G + L+IV     + + P ++   I L  L T   L  G +  G LGL IGPV +
Sbjct: 281 TAFAIGLLILYIVVIVQRQIMEPKVLSSNIGLDPLATLVALFIGFKLFGFLGLIIGPVTL 340

Query: 336 ALIAVIWKESI 346
            L+  + K  +
Sbjct: 341 VLLNTLHKAHV 351


>gi|115376481|ref|ZP_01463715.1| putative membrane protein [Stigmatella aurantiaca DW4/3-1]
 gi|115366484|gb|EAU65485.1| putative membrane protein [Stigmatella aurantiaca DW4/3-1]
          Length = 396

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 8/173 (4%)

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK---VIRSTFLGMTIIAIG 224
           + M+IA +F   +G    +QL +  E + P    + + ++ +   V RS        A  
Sbjct: 173 VMMLIAFYFLLVEG----KQLVAWIESVSPLRRGQTTELLTEFRGVTRSVLSSTLATAGV 228

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFL 283
           + L     +++ GVP  V    +T   A+IP  GA +   A ++ LL  G+   A  L L
Sbjct: 229 QALAALVGFFITGVPVPVFFAAVTFFFALIPAIGAAVVCVAAAVLLLATGHPVAALVLAL 288

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
           WG I + + D  ++P L    + +     FF L+GG+   G +GL +GP+++A
Sbjct: 289 WGIIVVGLADNVVKPLLARRGMNMHGAIVFFALLGGLAVFGAIGLLLGPLIVA 341


>gi|224438291|ref|ZP_03659218.1| hypothetical protein HcinC1_09901 [Helicobacter cinaedi CCUG 18818]
 gi|313144731|ref|ZP_07806924.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313129762|gb|EFR47379.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 355

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 101/227 (44%), Gaps = 26/227 (11%)

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI- 206
           ++  F+S+ G   L + +   F+I+ LFF++  G    Q  D + E L P    +IS + 
Sbjct: 131 YVLNFSSQLGKSSLGFMVDTGFIIVFLFFYFLYG---KQAYDYVIE-LIPFENIQISNVL 186

Query: 207 --VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
             V  VI+  F    +  + +G+  G      G    V  G++    +++P  G  + + 
Sbjct: 187 DEVTNVIKVVFYTSLVNIVLQGVAFGILIMFFGYDG-VFFGMLYGFASIVPIVGGGLVWL 245

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFI-VDKTLRPFLVG--------GPIKLPFLPTFF 314
            ++ Y    GN  NA  + L+  I   + +D  ++P L+G          +++  L  FF
Sbjct: 246 PLAGYEFYLGNTQNAIIIALYALIVCAVLIDNVIKPILIGLINKKVLKTSVRINELLIFF 305

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIW--------KESIMAIKENK 353
            ++ G+ ++G  G+ +GP + AL   +         KES+    E K
Sbjct: 306 AILAGLTSIGFWGIILGPAITALFISLLRIYRKQTAKESLTPTHEEK 352


>gi|320546512|ref|ZP_08040827.1| membrane protein [Streptococcus equinus ATCC 9812]
 gi|320448897|gb|EFW89625.1| membrane protein [Streptococcus equinus ATCC 9812]
          Length = 395

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 104/240 (43%), Gaps = 18/240 (7%)

Query: 109 WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII 168
           WLS+     + +EL    ++        +E+F K N  D+   FAS    +     ++II
Sbjct: 141 WLSN-----YQTELQDMLVNISNKAVDYAESFSK-NAFDWASNFASAIARV----TVAII 190

Query: 169 FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGE 225
                LF+F RD   +    D L + L     +  +RI   + K +     G   +AI  
Sbjct: 191 MSPFILFYFLRDSHKMK---DGLIKALPTKMRRPSARILGDINKQLAGYVQGQVTVAIVV 247

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLW 284
           G++    + + G+      G+I   + MIP  G+ ++   V I  +++G I     L  +
Sbjct: 248 GIMFTVFFNIIGLRYAATFGIIAGFLNMIPYLGSFLAMVPVVIMGIVQGPIMLVKVLVTF 307

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             IE  I  + + P ++G  + +  +   F L+      G+ G+F+G  + A I V+ KE
Sbjct: 308 -VIEQTIEGRFVAPLVLGSKLSIHPITIMFILLTSGSMFGIWGVFLGIPIYASIKVVVKE 366


>gi|324992095|gb|EGC24017.1| permease [Streptococcus sanguinis SK405]
 gi|324994189|gb|EGC26103.1| permease [Streptococcus sanguinis SK678]
 gi|327490609|gb|EGF22390.1| permease [Streptococcus sanguinis SK1058]
          Length = 365

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 108/254 (42%), Gaps = 15/254 (5%)

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           V +WL    G + +S+L  K L+     K L  + +    I  +         IF ++  
Sbjct: 117 VAKWLQQ-SGLLSSSQL--KDLT-----KQLQNSDIVNRAISLLGSLTGNISAIFGNF-F 167

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF----LGMTII 221
           S+I  I  +F F      +      L + L P    K    V  VI  T+    +G  I 
Sbjct: 168 SVIMSIFLMFAFLSSKEHLQTITSRLLQVLLPEKAVKRLSYVGSVIVETYDKFLMGQMIE 227

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA-TC 280
           A+  G+++  AY L G+P     GV+  +++ IP   P S  A+    +   + + A   
Sbjct: 228 AVIVGILVFIAYSLTGLPYAALTGVLAGVLSFIPYIGPFSACALGAIFIFTDSPWKALLS 287

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           + ++  ++L I    + P +VG  + LP L T    + G    GL+G+     + A+I  
Sbjct: 288 IAVFQGVQL-IEGNVIYPRVVGQSVGLPTLFTLAAALIGGNLFGLVGMIFFTPIFAVIYR 346

Query: 341 IWKESIMAIKENKE 354
           + +E ++  +E  E
Sbjct: 347 LVREFVVEKEERNE 360


>gi|167633918|ref|ZP_02392241.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0442]
 gi|254741741|ref|ZP_05199428.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           Kruger B]
 gi|167530719|gb|EDR93421.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0442]
          Length = 372

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 22/191 (11%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI------RSTFLGMTI 220
           ++F+++A FF   D   ++Q++     +    Y K I   + K +      + T + MT 
Sbjct: 179 LVFVLLATFFISYDWHRLAQKVRKFLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTT 238

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
           + +  GL++        VP  + + +IT ++ ++P  G    F    IY+   G+     
Sbjct: 239 VIVLIGLLI------LRVPYAITIAIITGVIDLLPYLGTGAVFVPWVIYVFFTGD----- 287

Query: 280 CLFLWGAIELFIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             F  G + L+IV     + + P ++   I L  L T   L  G +  G LGL IGPV +
Sbjct: 288 TAFAIGLLILYIVVIVQRQIMEPKVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVTL 347

Query: 336 ALIAVIWKESI 346
            L+  + K  +
Sbjct: 348 VLLNTLHKARV 358


>gi|300866882|ref|ZP_07111557.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300335132|emb|CBN56719.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 354

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 103/251 (41%), Gaps = 26/251 (10%)

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           ++ ELV+++          P W++           W K+ + P  L+     F K     
Sbjct: 94  QLNELVTRL----------PSWINSGAEQFETLHNWAKNRNLPIDLR----GFAKQLSER 139

Query: 148 FIPRFASRFGMIFL------DYCLSIIFMIIALFFFYRDGFSISQQL-DSLGEHLFPAYW 200
           F  +  S  G I           L ++  ++  F+    G    Q+L D L +   P   
Sbjct: 140 FSTQLQSIIGQILTVVLGAAGSLLDLMITVVLTFYLLLHG----QRLWDGLFQWFPPELG 195

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
            +I   + +  ++ F+G   +A   GL +  A+ +  VP  +  G+   IM +IP GA +
Sbjct: 196 SQIRESLRRNFQNYFIGQATLATFMGLSMTVAFLILQVPFGLLFGLAVGIMTLIPLGAGL 255

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
           S + VS+ + +         L +   ++  +++  + P L+GG   L  +  F  L+   
Sbjct: 256 SISIVSLLMALNNFWLGMKVLAVATVLDQ-VIENGIAPRLLGGFTGLNPVWIFISLLIAT 314

Query: 321 RTMGLLGLFIG 331
           +  GL+GL + 
Sbjct: 315 KVGGLIGLLVA 325


>gi|289580082|ref|YP_003478548.1| hypothetical protein Nmag_0398 [Natrialba magadii ATCC 43099]
 gi|289529635|gb|ADD03986.1| protein of unknown function UPF0118 [Natrialba magadii ATCC 43099]
          Length = 425

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 2/100 (2%)

Query: 238 VPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           VP+ V L V+T + A++P  GA   +  VS+YLL  G    A  L  +G+I +   D  +
Sbjct: 228 VPAVVLLSVVTFVFALLPLIGAFGVWVPVSLYLLATGQFVVAGILVAYGSI-VSASDTYI 286

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
           RP L+G            G+ GG+   G +GLFIGPV++ 
Sbjct: 287 RPALIGRTSAFNSAIIVVGIFGGLIIFGAVGLFIGPVVLG 326


>gi|225016793|ref|ZP_03705985.1| hypothetical protein CLOSTMETH_00705 [Clostridium methylpentosum
           DSM 5476]
 gi|224950461|gb|EEG31670.1| hypothetical protein CLOSTMETH_00705 [Clostridium methylpentosum
           DSM 5476]
          Length = 405

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 12/161 (7%)

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPIS 261
           +SRI   V+ S   G  + A+  G+V G    +  VP+   LG+I  + ++IP  GA   
Sbjct: 221 LSRIA-DVLYSFLYGQALDALFVGIVTGIILAVIQVPNAAVLGLIYGLFSLIPYFGAMFG 279

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG--LVGG 319
              V +   + G        F+   I  +I    + P ++G  I +  L   FG  L GG
Sbjct: 280 VLTVCLLTFLSGGFTKLILAFVLITILQWIDGNIINPKIIGNAIGIKPLYVIFGVTLFGG 339

Query: 320 VRTMGLLGLFIGPVLMALIA------VIWKESIMAIKENKE 354
           +   G++G+ IGP LMA+I       V  +E + A+KE  E
Sbjct: 340 L--FGIVGMLIGPPLMAIIIELVQEFVGDRERVKAVKEGLE 378


>gi|327468532|gb|EGF14011.1| permease [Streptococcus sanguinis SK330]
          Length = 364

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 103/252 (40%), Gaps = 13/252 (5%)

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           V +WL    G + +S+L  K L+     K L  + +    I  +         IF ++  
Sbjct: 117 VAKWLQQ-SGLLSSSQL--KDLT-----KQLQNSDIVNRAISLLGSLTGNISAIFGNF-F 167

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF----LGMTII 221
           S+I  I  +F F      +      L + L P    K    V  VI  T+    +G  I 
Sbjct: 168 SVIMSIFLMFAFLSSKEHLQTITSRLLQVLLPEKAVKRLSYVGSVIVETYDKFLMGQMIE 227

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL 281
           A+  G+++  AY L G+P     GV+  +++ IP   P S  A+    +   + + A   
Sbjct: 228 AVIVGILVFIAYSLTGLPYAALTGVLAGVLSFIPYIGPFSACALGAIFIFTDSPWKALLS 287

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                +   I    + P +VG  + LP L T    + G    GL+G+     + A+I  +
Sbjct: 288 IAVFQVVQLIEGNVIYPRVVGQSVGLPTLFTLAAALIGGNLFGLVGMIFFTPIFAVIYRL 347

Query: 342 WKESIMAIKENK 353
            +E ++  +E K
Sbjct: 348 VREFVVEKEEKK 359


>gi|310819639|ref|YP_003951997.1| hypothetical protein STAUR_2366 [Stigmatella aurantiaca DW4/3-1]
 gi|309392711|gb|ADO70170.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 390

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 8/173 (4%)

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK---VIRSTFLGMTIIAIG 224
           + M+IA +F   +G    +QL +  E + P    + + ++ +   V RS        A  
Sbjct: 167 VMMLIAFYFLLVEG----KQLVAWIESVSPLRRGQTTELLTEFRGVTRSVLSSTLATAGV 222

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFL 283
           + L     +++ GVP  V    +T   A+IP  GA +   A ++ LL  G+   A  L L
Sbjct: 223 QALAALVGFFITGVPVPVFFAAVTFFFALIPAIGAAVVCVAAAVLLLATGHPVAALVLAL 282

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
           WG I + + D  ++P L    + +     FF L+GG+   G +GL +GP+++A
Sbjct: 283 WGIIVVGLADNVVKPLLARRGMNMHGAIVFFALLGGLAVFGAIGLLLGPLIVA 335


>gi|206977140|ref|ZP_03238039.1| sporulation integral membrane protein YtvI [Bacillus cereus
           H3081.97]
 gi|217962076|ref|YP_002340646.1| sporulation integral membrane protein YtvI [Bacillus cereus AH187]
 gi|206744625|gb|EDZ56033.1| sporulation integral membrane protein YtvI [Bacillus cereus
           H3081.97]
 gi|217064824|gb|ACJ79074.1| sporulation integral membrane protein YtvI [Bacillus cereus AH187]
 gi|324328488|gb|ADY23748.1| sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 372

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 22/191 (11%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI------RSTFLGMTI 220
           ++F+++A FF   D   ++Q++     +    Y K I   + K +      + T + MT 
Sbjct: 179 LVFVLLATFFISYDWHRLAQKVRKFLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTT 238

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
           + +  GL++        VP  + + +IT ++ ++P  G    F    IY+   G+     
Sbjct: 239 VIVLIGLLI------LRVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGD----- 287

Query: 280 CLFLWGAIELFIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             F  G + L+IV     + + P ++   I L  L T   L  G +  G LGL IGPV +
Sbjct: 288 TAFAIGLLILYIVVIVQRQIMEPKVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVTL 347

Query: 336 ALIAVIWKESI 346
            L+  + K  +
Sbjct: 348 VLLNTLHKARV 358


>gi|49478696|ref|YP_038640.1| permease [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|52140913|ref|YP_085916.1| permease [Bacillus cereus E33L]
 gi|118479743|ref|YP_896894.1| permease [Bacillus thuringiensis str. Al Hakam]
 gi|196040923|ref|ZP_03108221.1| sporulation integral membrane protein YtvI [Bacillus cereus
           NVH0597-99]
 gi|196047486|ref|ZP_03114697.1| sporulation integral membrane protein YtvI [Bacillus cereus
           03BB108]
 gi|225866573|ref|YP_002751951.1| sporulation integral membrane protein YtvI [Bacillus cereus
           03BB102]
 gi|49330252|gb|AAT60898.1| conserved hypothetical protein, possible permease [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51974382|gb|AAU15932.1| conserved hypothetical protein; possible permease [Bacillus cereus
           E33L]
 gi|118418968|gb|ABK87387.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|196021701|gb|EDX60397.1| sporulation integral membrane protein YtvI [Bacillus cereus
           03BB108]
 gi|196028377|gb|EDX66986.1| sporulation integral membrane protein YtvI [Bacillus cereus
           NVH0597-99]
 gi|225789224|gb|ACO29441.1| sporulation integral membrane protein YtvI [Bacillus cereus
           03BB102]
          Length = 372

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 22/191 (11%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI------RSTFLGMTI 220
           ++F+++A FF   D   ++Q++     +    Y K I   + K +      + T + MT 
Sbjct: 179 LVFVLLATFFISYDWHRLAQKVRKFLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTT 238

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
           + +  GL++        VP  + + +IT ++ ++P  G    F    IY+   G+     
Sbjct: 239 VIVLIGLLI------LRVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGD----- 287

Query: 280 CLFLWGAIELFIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             F  G + L+IV     + + P ++   I L  L T   L  G +  G LGL IGPV +
Sbjct: 288 TAFAIGLLILYIVVIVQRQIMEPKVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVTL 347

Query: 336 ALIAVIWKESI 346
            L+  + K  +
Sbjct: 348 VLLNTLHKARV 358


>gi|20091671|ref|NP_617746.1| hypothetical protein MA2846 [Methanosarcina acetivorans C2A]
 gi|19916842|gb|AAM06226.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 405

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 3/136 (2%)

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLW 284
           G++ G  YW  GVP  +  G++T IMA++P  GA   +  +++Y ++  + F A  L   
Sbjct: 231 GIIGGVLYWALGVPYSLIWGILTFIMALLPVVGAGTVYGLLALYYVLIDDFFTAGALIFL 290

Query: 285 GAIELFIV-DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA-LIAVIW 342
           G + L I+ D  +RP        +    T       V  +G +G+ IGP+    L+A   
Sbjct: 291 GIVFLSIIPDFIMRPRFARNRAAIHPAITLVAFAAPVFVLGPIGIIIGPLTYGFLLAAFR 350

Query: 343 KESIMAIKENKEKISS 358
              I+     + + S+
Sbjct: 351 TRKILGTSSAQTESSA 366


>gi|330508411|ref|YP_004384839.1| hypothetical protein MCON_2605 [Methanosaeta concilii GP-6]
 gi|328929219|gb|AEB69021.1| Domain of unknown function protein (DUF20) [Methanosaeta concilii
           GP-6]
          Length = 355

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 2/78 (2%)

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFL 283
            G++    + L G+P    +GV+ A+  ++P  G P  F  +++Y LI G++F    L +
Sbjct: 226 SGVMAAIGFSLLGIPYPFLMGVVVAVFTLLPLLGPPFVFIPIAVYYLIVGDLFRCLILLV 285

Query: 284 WGAIELFIV-DKTLRPFL 300
           +G + L ++ +  +RP L
Sbjct: 286 FGTVVLMVIPENVIRPHL 303


>gi|21228979|ref|NP_634901.1| hypothetical protein MM_2877 [Methanosarcina mazei Go1]
 gi|20907519|gb|AAM32573.1| hypothetical protein MM_2877 [Methanosarcina mazei Go1]
          Length = 347

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 145/328 (44%), Gaps = 40/328 (12%)

Query: 43  TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH 102
           T  P+Y   + K   +    A++  +  + L ++PL FL    ++E+++     +L NQ 
Sbjct: 41  TFKPLYRFLLKKTRLNRQVSALLVIIISIFLVLIPLFFLLSMVIIEIQQ-----ILLNQE 95

Query: 103 GIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN----GIDFIPRFASRFGM 158
            I            M   E+  +  ++  S   +SE   + N     +D   +  +   +
Sbjct: 96  AI------------MATIEVGDRLFNNFFSRFGISENIFQINFEERVMDLATQIINFLSL 143

Query: 159 IFLDYCLSI----IFMIIALFFFYRDGFSISQQLDSLGEHLFPA--YWKKISRIV----P 208
           + +    SI    I ++I  F FY   + ++ +     ++LF A  +  K + I+     
Sbjct: 144 LVVGSIQSISHRAIGLLIMYFLFY---YLLTGEESDFMQNLFLAIPFNTKNTVILLNEFR 200

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
            ++R+T +    IA+ EG +L  ++ + GV      G I A+++ +P  G PI +    I
Sbjct: 201 NIVRTTLIASGAIAVIEGGILIVSFLIFGVQGAFLWGSIAAVLSFLPVVGTPIIWIPAVI 260

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKT-LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
              ++ +   A  + + G I L + D +  RP +     K+    +  G+  G+   GL+
Sbjct: 261 IQFLQQDYVAAAGILITG-IFLSVSDSSFFRPVIQKKVGKIHPFQSLLGIFIGIPLFGLV 319

Query: 327 GLFIGPVLMA---LIAVIWKESIMAIKE 351
           G+ IGP+L+A   L   ++ E  ++ KE
Sbjct: 320 GIIIGPLLLAYFYLTVKMFSEEYLSDKE 347


>gi|170685913|ref|ZP_02877136.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0465]
 gi|196033171|ref|ZP_03100584.1| sporulation integral membrane protein YtvI [Bacillus cereus W]
 gi|218905823|ref|YP_002453657.1| sporulation integral membrane protein YtvI [Bacillus cereus AH820]
 gi|254687404|ref|ZP_05151260.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724967|ref|ZP_05186750.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A1055]
 gi|170670377|gb|EDT21117.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0465]
 gi|195994600|gb|EDX58555.1| sporulation integral membrane protein YtvI [Bacillus cereus W]
 gi|218535804|gb|ACK88202.1| sporulation integral membrane protein YtvI [Bacillus cereus AH820]
          Length = 372

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 22/191 (11%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI------RSTFLGMTI 220
           ++F+++A FF   D   ++Q++     +    Y K I   + K +      + T + MT 
Sbjct: 179 LVFVLLATFFISYDWHRLAQKVRKFLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTT 238

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
           + +  GL++        VP  + + +IT ++ ++P  G    F    IY+   G+     
Sbjct: 239 VIVLIGLLI------LRVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGD----- 287

Query: 280 CLFLWGAIELFIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             F  G + L+IV     + + P ++   I L  L T   L  G +  G LGL IGPV +
Sbjct: 288 TAFAIGLLILYIVVIVQRQIMEPKVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVTL 347

Query: 336 ALIAVIWKESI 346
            L+  + K  +
Sbjct: 348 VLLNTLHKARV 358


>gi|327459002|gb|EGF05350.1| permease [Streptococcus sanguinis SK1057]
          Length = 365

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 108/254 (42%), Gaps = 15/254 (5%)

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           V +WL    G + +S+L  K L+     K L  + +    I  +         IF ++  
Sbjct: 117 VAKWLQQ-SGLLSSSQL--KDLT-----KQLQNSDIVNRAISLLGSLTGNISAIFGNF-F 167

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF----LGMTII 221
           S+I  I  +F F      +      L + L P    K    V  VI  T+    +G  I 
Sbjct: 168 SVIMSIFLMFAFLSSKEHLQTITSRLLQVLLPEKAVKRLSYVGSVIVETYDKFLMGQMIE 227

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA-TC 280
           A+  G+++  AY L G+P     GV+  +++ IP   P S  A+    +   + + A   
Sbjct: 228 AVIVGVLVFIAYSLTGLPYAALTGVLAGVLSFIPYIGPFSACALGAIFIFTDSPWKALLS 287

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           + ++  ++L I    + P +VG  + LP L T    + G    GL+G+     + A+I  
Sbjct: 288 IAVFQGVQL-IEGNVIYPRVVGQSVGLPTLFTLAAALIGGNLFGLVGMIFFTPIFAVIYR 346

Query: 341 IWKESIMAIKENKE 354
           + +E ++  +E  E
Sbjct: 347 LVREFVVEKEERNE 360


>gi|269967144|ref|ZP_06181211.1| hypothetical protein VMC_26410 [Vibrio alginolyticus 40B]
 gi|269828281|gb|EEZ82548.1| hypothetical protein VMC_26410 [Vibrio alginolyticus 40B]
          Length = 382

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 76/146 (52%), Gaps = 9/146 (6%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH--VALGVITAIMAMIPGGA 258
           K  + ++   I+S  LG+  +A  + L++G+ +++ GVP+   + L ++   +A +P  A
Sbjct: 208 KSWTTLIAATIKSVLLGVVGVAAIQALLIGAGFFVFGVPAAGLLTLLLMILCIAQLP--A 265

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            ++   V  ++ +  +   AT   +W  +   + +   +P L+G  + +P      G +G
Sbjct: 266 LLAVLPVIGFMYMTQDTSTATMFTVW-VVVAALSENLFKPMLMGRGVDVPMPVILLGAIG 324

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKE 344
           G+   G++GLF+G V++A    IW E
Sbjct: 325 GMLFYGIVGLFLGAVILA----IWYE 346


>gi|229158199|ref|ZP_04286266.1| Sporulation integral membrane protein YtvI [Bacillus cereus ATCC
           4342]
 gi|228625157|gb|EEK81917.1| Sporulation integral membrane protein YtvI [Bacillus cereus ATCC
           4342]
          Length = 344

 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 22/191 (11%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI------RSTFLGMTI 220
           ++F+++A FF   D   ++Q++     +    Y K I   + K +      + T + MT 
Sbjct: 151 LVFVLLATFFISYDWHRLAQKVRKFLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTT 210

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
           + +  GL++        VP  + + +IT ++ ++P  G    F    IY+   G+     
Sbjct: 211 VIVLIGLLI------LRVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGD----- 259

Query: 280 CLFLWGAIELFIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             F  G + L+IV     + + P ++   I L  L T   L  G +  G LGL IGPV +
Sbjct: 260 TAFAIGLLILYIVVIVQRQIMEPKVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVTL 319

Query: 336 ALIAVIWKESI 346
            L+  + K  +
Sbjct: 320 VLLNTLHKARV 330


>gi|324990266|gb|EGC22204.1| permease [Streptococcus sanguinis SK353]
          Length = 364

 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 109/258 (42%), Gaps = 15/258 (5%)

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           V +WL    G + +S+L  K L+     K L  + +    I  +         IF ++  
Sbjct: 117 VAKWLQQ-SGLLSSSQL--KDLT-----KQLQNSDIVNRAISLLGSLTGNISAIFGNF-F 167

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF----LGMTII 221
           S+I  I  +F F      +      L + L P    K    V  VI  T+    +G  I 
Sbjct: 168 SVIMSIFLMFAFLSSKEHLQTITSRLLQVLLPGKAVKRLSYVGSVIVETYDKFLMGQMIE 227

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA-TC 280
           A+  G+++  AY L G+P     GV+  +++ IP   P S  A+    +   + + A   
Sbjct: 228 AVIVGILVFIAYSLTGLPYAALTGVLAGVLSFIPYIGPFSACALGAIFIFTDSPWKALLS 287

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           + ++  ++L I    + P +VG  + LP L T    + G    GL+G+     + A+I  
Sbjct: 288 IAVFQGVQL-IEGNVIYPRVVGQSVGLPTLFTLAAALIGGNLFGLVGMIFFTPIFAVIYR 346

Query: 341 IWKESIMAIKENKEKISS 358
           + +E ++  +E K  I  
Sbjct: 347 LVREFVVEKEEKKALIKE 364


>gi|262368618|ref|ZP_06061947.1| PerM family permease [Acinetobacter johnsonii SH046]
 gi|262316296|gb|EEY97334.1| PerM family permease [Acinetobacter johnsonii SH046]
          Length = 406

 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 76/361 (21%), Positives = 155/361 (42%), Gaps = 68/361 (18%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE---------SSTFLAVIATVS 69
           +IL  LY LK    P + A ++ +    ++S  + K  +         S+ F+ +   ++
Sbjct: 17  LILWVLYLLKPVVLPFIGAFLVAY----LFSPLVDKLHKIGLPRWLSISAVFIGIGVVIT 72

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD----IPGGMWASELWTK 125
           +   ++VPL++     M     + S +  AN   +P   WLSD    +P  +   ++   
Sbjct: 73  LAFWYLVPLVW--EQLMYAKNSIPSGIHWANYKFLP---WLSDSFNLVPMELDVDQISAA 127

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            + + Q       T    + I  +    ++ G+ F+    +++ + I  F+F  D     
Sbjct: 128 IMEYVQ-------TNYSADSIQAMIAKLAQSGLNFIQIGGTVVLIPIIAFYFLLDW---D 177

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTF-------------------LGMTIIAIGEG 226
           + LDS    L P  +++ + ++ K   S                     +G+ +I +  G
Sbjct: 178 RMLDSF-RRLIPRRYEEQTLVIVKECHSVLGAFVKGQFLVMVLLGVVYAMGLQLIGLEVG 236

Query: 227 LVLGSAYWLAGVPSHV--ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLW 284
           L++G    L  +  ++  A+G+I A++A +       F    + LL+ G +F      + 
Sbjct: 237 LIIGMVAGLCSIIPYLGFAVGIIAAVIASL-----FQFGIDWMQLLLVGVVF-----MIG 286

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            A+E +I    L+PFL+G  I L  +   F ++ G +  G+LG+ I   + A+I V+ + 
Sbjct: 287 QAVEGYI----LQPFLLGDKIGLSPVAVVFAVLAGAQLGGILGMLIALPVAAVIVVLLRH 342

Query: 345 S 345
           +
Sbjct: 343 A 343


>gi|237713414|ref|ZP_04543895.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262406786|ref|ZP_06083335.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646015|ref|ZP_06723680.1| membrane family protein [Bacteroides ovatus SD CC 2a]
 gi|294806044|ref|ZP_06764904.1| membrane family protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229446653|gb|EEO52444.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262355489|gb|EEZ04580.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638586|gb|EFF56939.1| membrane family protein [Bacteroides ovatus SD CC 2a]
 gi|294446763|gb|EFG15370.1| membrane family protein [Bacteroides xylanisolvens SD CC 1b]
 gi|295084671|emb|CBK66194.1| Predicted permease [Bacteroides xylanisolvens XB1A]
          Length = 377

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 137/350 (39%), Gaps = 36/350 (10%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L G   P   A +I +  +P+   F  K    S  +++  ++ ++ +  V L +L    M
Sbjct: 31  LSGVLLPFFIAWLIAYMVYPLVKFFQYKLRLKSRIISIFCSLFLITVIGVTLFYLLVPPM 90

Query: 87  L----EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
           +     M +L+    L N  G  VP+ LS         E   +++      ++LSE  + 
Sbjct: 91  ISEIGRMNDLLV-TYLTNGAGNNVPKSLS---------EFIHENIDLQALNRVLSEENIL 140

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE---HLFPAY 199
               D +PR  +      L   L+I+F I+A F        I    +++ E   HL P  
Sbjct: 141 AAIKDTVPRVWT-----LLAESLNILFSILASFIILLYVIFILLDYEAIAEGWLHLLPNK 195

Query: 200 WKKI-SRIVPKV---IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           ++   S +V  V   +   F G  ++A   G++    + +   P  +ALG+    + M+P
Sbjct: 196 YRTFASNLVHDVQDGMNRYFRGQALVAFCVGILFSIGFLIIDFPMAIALGLFIGALNMVP 255

Query: 256 GGAPISFTAVSIYLLIKGNIFNAT------CLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
               I F    +  ++K             C     AI   I D  L P ++G    L  
Sbjct: 256 YLQIIGFLPTILLAILKAADTGQNFWIIIACALAVFAIVQIIQDTFLVPKIMGKITGLNP 315

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                 L      MG+LG+ I   L  L+   ++  I+    NKEKI  +
Sbjct: 316 AIILLSLSIWGSLMGMLGMIIALPLTTLMLSYYQRFII----NKEKIKYD 361


>gi|91223164|ref|ZP_01258430.1| hypothetical protein V12G01_04956 [Vibrio alginolyticus 12G01]
 gi|91191977|gb|EAS78240.1| hypothetical protein V12G01_04956 [Vibrio alginolyticus 12G01]
          Length = 382

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 76/146 (52%), Gaps = 9/146 (6%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH--VALGVITAIMAMIPGGA 258
           K  + ++   I+S  LG+  +A  + L++G+ +++ GVP+   + L ++   +A +P  A
Sbjct: 208 KSWTTLIAATIKSVLLGVVGVAAIQALLIGAGFFVFGVPAAGLLTLLLMILCIAQLP--A 265

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            ++   V  ++ +  +   AT   +W  +   + +   +P L+G  + +P      G +G
Sbjct: 266 LLAVLPVIGFMYMTQDTSTATMFTVW-VVVAALSENLFKPMLMGRGVDVPMPVILLGAIG 324

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKE 344
           G+   G++GLF+G V++A    IW E
Sbjct: 325 GMLFYGIVGLFLGAVILA----IWYE 346


>gi|261839604|gb|ACX99369.1| membrane protein [Helicobacter pylori 52]
          Length = 348

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 74/166 (44%), Gaps = 13/166 (7%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLG-SAYWLAGVPSHVALGVITAIMAMIPG-GA 258
           KKI   V  ++R   L   I  I EG+  G    W        +LG++  + +++P  G 
Sbjct: 182 KKIFEEVAGILRIVLLTSLITIILEGVAFGLMIVWFG--HDGWSLGILYGLASLVPAVGG 239

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLV--------GGPIKLPF 309
            + +  ++IY L  GN+  A  + L+  + +  ++D  ++P L+           +K+  
Sbjct: 240 ALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKRIFKTTLKINE 299

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 300 MLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345


>gi|260174265|ref|ZP_05760677.1| putative permease [Bacteroides sp. D2]
 gi|293370047|ref|ZP_06616614.1| membrane family protein [Bacteroides ovatus SD CMC 3f]
 gi|299147768|ref|ZP_07040831.1| putative membrane protein [Bacteroides sp. 3_1_23]
 gi|315922536|ref|ZP_07918776.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|292634965|gb|EFF53487.1| membrane family protein [Bacteroides ovatus SD CMC 3f]
 gi|298513951|gb|EFI37837.1| putative membrane protein [Bacteroides sp. 3_1_23]
 gi|313696411|gb|EFS33246.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 377

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 137/350 (39%), Gaps = 36/350 (10%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L G   P   A +I +  +P+   F  K    S  +++  ++ ++ +  V L +L    M
Sbjct: 31  LSGVLLPFFIAWLIAYMVYPLVKFFQYKLRLKSRIISIFCSLFLITVIGVTLFYLLVPPM 90

Query: 87  L----EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
           +     M +L+    L N  G  VP+ LS         E   +++      ++LSE  + 
Sbjct: 91  ISEIGRMNDLLV-TYLTNGAGNNVPKNLS---------EFIHENIDLQALNRVLSEENIL 140

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE---HLFPAY 199
               D +PR  +      L   L+I+F I+A F        I    +++ E   HL P  
Sbjct: 141 AAIKDTVPRVWT-----LLAESLNILFSILASFIILLYVIFILLDYEAIAEGWLHLLPNK 195

Query: 200 WKKI-SRIVPKV---IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           ++   S +V  V   +   F G  ++A   G++    + +   P  +ALG+    + M+P
Sbjct: 196 YRTFASNLVHDVQDGMNRYFRGQALVAFCVGILFSIGFLIIDFPMAIALGLFIGALNMVP 255

Query: 256 GGAPISFTAVSIYLLIKGNIFNAT------CLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
               I F    +  ++K             C     AI   I D  L P ++G    L  
Sbjct: 256 YLQIIGFLPTILLAILKAADTGQNFWIIIACALAVFAIVQIIQDTFLVPKIMGKITGLNP 315

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                 L      MG+LG+ I   L  L+   ++  I+    NKEKI  +
Sbjct: 316 AIILLSLSIWGSLMGMLGMIIALPLTTLMLSYYQRFII----NKEKIKYD 361


>gi|298484321|ref|ZP_07002483.1| membrane protein [Bacteroides sp. D22]
 gi|298269511|gb|EFI11110.1| membrane protein [Bacteroides sp. D22]
          Length = 360

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 77/345 (22%), Positives = 140/345 (40%), Gaps = 34/345 (9%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L G   P   A +I +  +P+   F  K    S  +++  ++ ++ +  V L +L    M
Sbjct: 31  LSGVLLPFFIAWLIAYMIYPLVKFFQYKLRLKSRIISIFCSLFLITVIGVTLFYLLVPPM 90

Query: 87  L----EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
           +     M +L+    L N  G  VP+ LS         E   +++      ++LSE  + 
Sbjct: 91  ISEIGRMNDLLVTY-LTNGAGNNVPKNLS---------EFIHENIDLQALNRVLSEENIL 140

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE---HLFPAY 199
               D +PR  +      L   L+I+F I+A F        I    +++ E   HL P  
Sbjct: 141 ATIKDTVPRVWT-----LLAESLNILFSILASFIILLYVIFILLDYEAIAEGWLHLLPNK 195

Query: 200 WKKI-SRIVPKV---IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           ++   S +V  V   +   F G  ++A   G++    + +   P  +ALG+    + M+P
Sbjct: 196 YRTFASNLVHDVQDGMNRYFRGQALVAFCVGILFSIGFLIIDFPMAIALGLFIGALNMVP 255

Query: 256 GGAPISFTAVSIYLLIKGN-------IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
               I F    +  ++K         I  A  L ++  +++ I D  L P ++G    L 
Sbjct: 256 YLQIIGFLPTILLAILKAADTGQNFWIIIACALAVFAIVQI-IQDTFLVPKIMGKITGLN 314

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                  L      MG+LG+ I   L  L+   ++  I+  ++NK
Sbjct: 315 PAIILLSLSIWGSLMGMLGMIIALPLTTLMLSYYQRFIINKEKNK 359


>gi|229824112|ref|ZP_04450181.1| hypothetical protein GCWU000282_01416 [Catonella morbi ATCC 51271]
 gi|229786466|gb|EEP22580.1| hypothetical protein GCWU000282_01416 [Catonella morbi ATCC 51271]
          Length = 379

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 126/281 (44%), Gaps = 31/281 (11%)

Query: 101 QHGIPVPRWLSDIPG-GMWASELWTKHLSH-PQSLKILSE-------------TFLKTNG 145
           Q    + R++  IPG   W      ++ ++ PQ   ++S+             T L T  
Sbjct: 103 QLSTAISRFIEVIPGVSTWLQRAIEEYDAYFPQLQTLMSQLNINWGSLIQQSMTVLNTLS 162

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK---K 202
            +F+    +    +  +   SI+ +++AL+        + Q    +  +L P++ +    
Sbjct: 163 SNFLNITFNTITGVASNTINSILSLMVALYILGSKERLLLQGKRVIMAYLKPSHAQTLLD 222

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG----VPSHVALGVITAIMAMIP-GG 257
           I R++ +   + F+GMT+    EG++LGS   +A     +P    LGVI  +MA+IP  G
Sbjct: 223 IIRLMNESFTNFFVGMTL----EGIILGSLVTVAASIFNLPYAGMLGVIAGVMALIPIIG 278

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
             IS  AV   +L+  +   A    +   I + +    + P +VGG I LP L       
Sbjct: 279 GYIS-AAVGTLMLLAVSPSQALFYLVMVIIIMQLEGNLIYPRVVGGSIGLPGLWVLVAFT 337

Query: 318 GGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKEKIS 357
            G   MG+ G+ +G P+   L  ++ ++ +M  +E ++ ++
Sbjct: 338 VGGGLMGISGMILGIPLAATLYKLLGRDVLM--REKRQTLT 376


>gi|229032241|ref|ZP_04188214.1| Sporulation integral membrane protein YtvI [Bacillus cereus AH1271]
 gi|228729021|gb|EEL80024.1| Sporulation integral membrane protein YtvI [Bacillus cereus AH1271]
          Length = 365

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 22/191 (11%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI------RSTFLGMTI 220
           ++F+++A FF   D   ++Q++     +    Y K I   + K +      + T + MT 
Sbjct: 172 LVFVLLATFFISYDWHRLAQKVRKFLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTT 231

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
           + +  GL++        VP  + + +IT ++ ++P  G    F    IY+   G+     
Sbjct: 232 VIVLIGLLI------LRVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGD----- 280

Query: 280 CLFLWGAIELFIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             F  G + L+IV     + + P ++   I L  L T   L  G +  G LGL IGPV +
Sbjct: 281 TAFAIGLLILYIVVIVQRQIMEPKVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVTL 340

Query: 336 ALIAVIWKESI 346
            L+  + K  +
Sbjct: 341 VLLNTLHKARV 351


>gi|288905039|ref|YP_003430261.1| hypothetical protein GALLO_0834 [Streptococcus gallolyticus UCN34]
 gi|306831112|ref|ZP_07464273.1| membrane protein [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325978008|ref|YP_004287724.1| membrane protein [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
 gi|288731765|emb|CBI13326.1| hypothetical membrane protein [Streptococcus gallolyticus UCN34]
 gi|304426678|gb|EFM29789.1| membrane protein [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325177936|emb|CBZ47980.1| membrane protein [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
          Length = 395

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 96/212 (45%), Gaps = 13/212 (6%)

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           +E+F K N ID+   FAS    +     ++II     LF+F RD     +  + L + L 
Sbjct: 164 AESFSK-NAIDWASNFASAIARV----TVAIIMSPFILFYFLRDS---GKMKEGLLKTLP 215

Query: 197 PAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
               + ISR+   + K +     G   +AI  G++    + + G+      G+I   + M
Sbjct: 216 TRMRRPISRVLGDINKQLAGYVQGQVTVAIVVGIMFTIFFNIIGLRYAATFGIIAGFLNM 275

Query: 254 IPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP  G+ ++   V I  +++G I     L  +  +E  I  + + P ++G  + +  +  
Sbjct: 276 IPYLGSFLAMVPVVIMGVVQGPIMLIKVLITF-VVEQTIEGRFVSPLVLGSKLSIHPITI 334

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            F L+      G+ G+F+G  + A I V+ KE
Sbjct: 335 MFILLTSGSMFGVWGVFLGIPIYASIKVVVKE 366


>gi|229093693|ref|ZP_04224792.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock3-42]
 gi|228689578|gb|EEL43386.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock3-42]
          Length = 365

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 22/191 (11%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI------RSTFLGMTI 220
           ++F+++A FF   D   ++Q++     +    Y K I   + K +      + T + MT 
Sbjct: 172 LVFVLLATFFISYDWHRLAQKVRKFLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTT 231

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
           + +  GL++        VP  + + +IT ++ ++P  G    F    IY+   G+     
Sbjct: 232 VIVLIGLLI------LRVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGD----- 280

Query: 280 CLFLWGAIELFIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             F  G + L+IV     + + P ++   I L  L T   L  G +  G LGL IGPV +
Sbjct: 281 TAFAIGLLILYIVVIVQRQIMEPKVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVTL 340

Query: 336 ALIAVIWKESI 346
            L+  + K  +
Sbjct: 341 VLLNTLHKARV 351


>gi|222098058|ref|YP_002532115.1| hypothetical protein BCQ_4400 [Bacillus cereus Q1]
 gi|228987844|ref|ZP_04147953.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229141322|ref|ZP_04269860.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           BDRD-ST26]
 gi|229198746|ref|ZP_04325443.1| Sporulation integral membrane protein YtvI [Bacillus cereus m1293]
 gi|221242116|gb|ACM14826.1| membrane protein, putative [Bacillus cereus Q1]
 gi|228584729|gb|EEK42850.1| Sporulation integral membrane protein YtvI [Bacillus cereus m1293]
 gi|228642103|gb|EEK98396.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           BDRD-ST26]
 gi|228771892|gb|EEM20349.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 365

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 22/191 (11%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI------RSTFLGMTI 220
           ++F+++A FF   D   ++Q++     +    Y K I   + K +      + T + MT 
Sbjct: 172 LVFVLLATFFISYDWHRLAQKVRKFLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTT 231

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
           + +  GL++        VP  + + +IT ++ ++P  G    F    IY+   G+     
Sbjct: 232 VIVLIGLLI------LRVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGD----- 280

Query: 280 CLFLWGAIELFIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             F  G + L+IV     + + P ++   I L  L T   L  G +  G LGL IGPV +
Sbjct: 281 TAFAIGLLILYIVVIVQRQIMEPKVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVTL 340

Query: 336 ALIAVIWKESI 346
            L+  + K  +
Sbjct: 341 VLLNTLHKARV 351


>gi|228935904|ref|ZP_04098714.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|229186851|ref|ZP_04314006.1| Sporulation integral membrane protein YtvI [Bacillus cereus BGSC
           6E1]
 gi|228596588|gb|EEK54253.1| Sporulation integral membrane protein YtvI [Bacillus cereus BGSC
           6E1]
 gi|228823672|gb|EEM69494.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 365

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 22/191 (11%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI------RSTFLGMTI 220
           ++F+++A FF   D   ++Q++     +    Y K I   + K +      + T + MT 
Sbjct: 172 LVFVLLATFFISYDWHRLAQKVRKFLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTT 231

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
           + +  GL++        VP  + + +IT ++ ++P  G    F    IY+   G+     
Sbjct: 232 VIVLIGLLI------LRVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGD----- 280

Query: 280 CLFLWGAIELFIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             F  G + L+IV     + + P ++   I L  L T   L  G +  G LGL IGPV +
Sbjct: 281 TAFAIGLLILYIVVIVQRQIMEPKVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVTL 340

Query: 336 ALIAVIWKESI 346
            L+  + K  +
Sbjct: 341 VLLNTLHKARV 351


>gi|42783773|ref|NP_981020.1| hypothetical protein BCE_4727 [Bacillus cereus ATCC 10987]
 gi|42739703|gb|AAS43628.1| membrane protein, putative [Bacillus cereus ATCC 10987]
          Length = 365

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 22/191 (11%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI------RSTFLGMTI 220
           ++F+++A FF   D   ++Q++     +    Y K I   + K +      + T + MT 
Sbjct: 172 LVFVLLATFFISYDWHRLAQKVRKFLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTT 231

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
           + +  GL++        VP  + + +IT ++ ++P  G    F    IY+   G+     
Sbjct: 232 VIVLIGLLI------LRVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGD----- 280

Query: 280 CLFLWGAIELFIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             F  G + L+IV     + + P ++   I L  L T   L  G +  G LGL IGPV +
Sbjct: 281 TAFAIGLLILYIVVIVQRQIMEPKVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVTL 340

Query: 336 ALIAVIWKESI 346
            L+  + K  +
Sbjct: 341 VLLNTLHKARV 351


>gi|257053164|ref|YP_003130997.1| protein of unknown function UPF0118 [Halorhabdus utahensis DSM
           12940]
 gi|256691927|gb|ACV12264.1| protein of unknown function UPF0118 [Halorhabdus utahensis DSM
           12940]
          Length = 336

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 75/172 (43%), Gaps = 8/172 (4%)

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTII----AIGEGLVLGSAYWLAGVPSHVALGVI 247
              + PA +  + + + + +R T  G+ ++     +G  ++    ++L G  + V L V+
Sbjct: 163 ARRVVPAEYHDVVQALHERLRDTLFGLYVLQGATGVGTFVIALPVFFLLGYDAAVTLAVL 222

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF--IVDKTLRPFLVGGPI 305
           + ++  +P   P     V +   +      A  L           + D  +RP L     
Sbjct: 223 SGVLQFVPIIGPSVLIGVLVLTEVLAENVTAAILVGVVGFVFVAGLPDVLIRPRLSAVAA 282

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
            LP    F G  GGV +MG +G+  GPV++AL+A      ++A +++ + + 
Sbjct: 283 DLPGSLYFIGFTGGVLSMGAIGIIAGPVVVALLA--ESVELLASEQHPDAVE 332


>gi|217033512|ref|ZP_03438941.1| hypothetical protein HP9810_905g31 [Helicobacter pylori 98-10]
 gi|216944037|gb|EEC23468.1| hypothetical protein HP9810_905g31 [Helicobacter pylori 98-10]
          Length = 331

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 74/166 (44%), Gaps = 13/166 (7%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLG-SAYWLAGVPSHVALGVITAIMAMIPG-GA 258
           KKI   V  ++R   L   I  I EG+  G    W        +LG++  + +++P  G 
Sbjct: 165 KKIFEEVAGILRIVLLTSLITVILEGVAFGLMIVWFG--HDGWSLGILYGLASLVPAVGG 222

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLV--------GGPIKLPF 309
            + +  ++IY L  GN+  A  + L+  + +  ++D  ++P L+           +K+  
Sbjct: 223 ALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKRIFKTTLKINE 282

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 283 MLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 328


>gi|296330760|ref|ZP_06873236.1| putative integral inner membrane protein [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675767|ref|YP_003867439.1| putative integral inner membrane protein [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296152074|gb|EFG92947.1| putative integral inner membrane protein [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305414011|gb|ADM39130.1| putative integral inner membrane protein [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 369

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 63/305 (20%), Positives = 127/305 (41%), Gaps = 36/305 (11%)

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ------ 131
           L++L + G+L         V+ +Q    V    +++P  +   +  TK LSH Q      
Sbjct: 73  LIYLLFIGLLAFVSASVGPVITSQ----VTGLFNNLPDYIKQIQSLTKDLSHSQWFTWMM 128

Query: 132 -----SLKILSET---FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                S+  + ++   FL+    +     ++ FG++  +  L II +   LF+  +DG  
Sbjct: 129 NQDYVSISKIEQSLTSFLQNLPQNITSSLSAVFGVV-TNITLVIITVPFILFYMLKDG-- 185

Query: 184 ISQQLDSLGEHLFPAYWK----KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
              +   L   + PA ++    KI + +   + + F G  +I +  G      Y +AG+P
Sbjct: 186 --HRFPHLAVKILPASYRTEGLKIFKDLSDTLAAYFQGQLLICLFVGTACFIGYLIAGLP 243

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK----T 295
             + LG++ AI  +IP   P    A ++ +       ++    L+  I + IV +     
Sbjct: 244 YALILGIVMAITNIIPYVGPFLGAAPAVIV----GFMDSPAKALFAIIVVVIVQQLDGNL 299

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK-ENKE 354
           L P ++G  +    L     L+G     G+LG+ +   + A++   +   +   K   + 
Sbjct: 300 LSPLVIGKRLNTHPLTIILLLIGAGSFGGILGMILAVPVYAVVKAFFLNIVRLFKLRQRS 359

Query: 355 KISSN 359
           ++  N
Sbjct: 360 RLEEN 364


>gi|218676834|ref|YP_002395653.1| hypothetical protein VS_II1074 [Vibrio splendidus LGP32]
 gi|218325102|emb|CAV26948.1| putative membrane protein [Vibrio splendidus LGP32]
          Length = 366

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 86/194 (44%), Gaps = 8/194 (4%)

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
            F  + AS  G +   +   II  IIA   F  +       +  L   L     +++ ++
Sbjct: 149 QFATKAASVLGSLGGGFIQFIISTIIA-GAFMSNADKCQTGVTHLVARLTDGKGEELVQL 207

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV--ALGVITAIMAMIPGGAPI-SFT 263
               +RS   G+  +A+ + ++      +AGVP+    AL V+   +  +P   PI +  
Sbjct: 208 SKSTVRSVVQGVIGVAVIQSIMSAIGLVIAGVPAAAFWALAVLLIAIIQLP---PILALL 264

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
              IY+    +   A+   +W  I +   D  L+P L+     +P L    G +GG+   
Sbjct: 265 PAIIYMFSVESTLAASLFLVW-CILVSGSDAILKPMLLSRGSHIPMLVILLGALGGMAMS 323

Query: 324 GLLGLFIGPVLMAL 337
           G++GLF+G V+++L
Sbjct: 324 GIVGLFVGAVILSL 337


>gi|47565007|ref|ZP_00236050.1| hypothetical protein membrane Spanning protein [Bacillus cereus
           G9241]
 gi|47557793|gb|EAL16118.1| hypothetical protein membrane Spanning protein [Bacillus cereus
           G9241]
          Length = 365

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 22/191 (11%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI------RSTFLGMTI 220
           ++F+++A FF   D   ++Q++     +    Y K I   + K +      + T + MT 
Sbjct: 172 LVFVLLATFFISYDWHRLAQKVRKFLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTT 231

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
           + +  GL++        VP  + + +IT ++ ++P  G    F    IY+   G+     
Sbjct: 232 VIVLIGLLI------LRVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGD----- 280

Query: 280 CLFLWGAIELFIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             F  G + L+IV     + + P ++   I L  L T   L  G +  G LGL IGPV +
Sbjct: 281 TAFAIGLLILYIVVIVQRQIMEPKVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVTL 340

Query: 336 ALIAVIWKESI 346
            L+  + K  +
Sbjct: 341 VLLNTLHKARV 351


>gi|228917234|ref|ZP_04080791.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228929643|ref|ZP_04092661.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228948321|ref|ZP_04110604.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229124162|ref|ZP_04253354.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           95/8201]
 gi|228659464|gb|EEL15112.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           95/8201]
 gi|228811308|gb|EEM57646.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228830030|gb|EEM75649.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228842435|gb|EEM87526.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 365

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 22/191 (11%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI------RSTFLGMTI 220
           ++F+++A FF   D   ++Q++     +    Y K I   + K +      + T + MT 
Sbjct: 172 LVFVLLATFFISYDWHRLAQKVRKFLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTT 231

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
           + +  GL++        VP  + + +IT ++ ++P  G    F    IY+   G+     
Sbjct: 232 VIVLIGLLI------LRVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGD----- 280

Query: 280 CLFLWGAIELFIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             F  G + L+IV     + + P ++   I L  L T   L  G +  G LGL IGPV +
Sbjct: 281 TAFAIGLLILYIVVIVQRQIMEPKVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVTL 340

Query: 336 ALIAVIWKESI 346
            L+  + K  +
Sbjct: 341 VLLNTLHKARV 351


>gi|125717282|ref|YP_001034415.1| permease, putative [Streptococcus sanguinis SK36]
 gi|125497199|gb|ABN43865.1| Permease, putative [Streptococcus sanguinis SK36]
          Length = 360

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 103/253 (40%), Gaps = 13/253 (5%)

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           V +WL    G + +S+L  K L+     K L  + +    I  +         IF ++  
Sbjct: 117 VAKWLQQ-SGLLSSSQL--KDLT-----KQLQNSDIVNRAISLLGSLTGNISAIFGNF-F 167

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF----LGMTII 221
           S+I  I  +F F      +      L + L P    K    V  VI  T+    +G  I 
Sbjct: 168 SVIMSIFLMFAFLSSKEHLQTITSRLLQVLLPEKAVKRLSYVGSVIVETYDKFLMGQMIE 227

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL 281
           A+  G+++  AY L G+P     GV+  +++ IP   P S  A+    +   + + A   
Sbjct: 228 AVIVGILVFIAYSLTGLPYAALTGVLAGVLSFIPYIGPFSACALGAIFIFTDSPWKALLS 287

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                +   I    + P +VG  + LP L T    + G    GL+G+     + A+I  +
Sbjct: 288 IAVFQLVQLIEGNIIYPRVVGQSVGLPTLFTLAAALIGGNLFGLVGMIFFTPIFAVIYRL 347

Query: 342 WKESIMAIKENKE 354
            +E ++  +E K 
Sbjct: 348 VREFVVEKEEKKR 360


>gi|89096364|ref|ZP_01169257.1| membrane protein [Bacillus sp. NRRL B-14911]
 gi|89089218|gb|EAR68326.1| membrane protein [Bacillus sp. NRRL B-14911]
          Length = 343

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 20/166 (12%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-- 258
           +K S    KVI + F    +IAI   ++   A W+   P  VAL ++  ++ +IP     
Sbjct: 189 RKFSMTFGKVIEAQF----VIAIVNCILTTLALWIMDFPQLVALSLMVLVLGLIPVAGVI 244

Query: 259 ----PISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
               P++  A SI  ++L+   I     +    AIE +I    L P L+    +LP   T
Sbjct: 245 ISMIPLTIIAYSIGGFMLVGYIILVVMVI---HAIEAYI----LNPKLMSSKTELPVFYT 297

Query: 313 FFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKEKIS 357
           F  L+      G+ GL +G PV M L+ ++  + I   +  + ++S
Sbjct: 298 FIVLIFSEHFFGIWGLIVGIPVFMFLLDILGVKEIAPKQTKQARVS 343


>gi|297518809|ref|ZP_06937195.1| putative inner membrane protein [Escherichia coli OP50]
          Length = 318

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 56/283 (19%), Positives = 123/283 (43%), Gaps = 15/283 (5%)

Query: 42  FTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ 101
             +WP+            +   ++ T+ ++ +FI+P+  L    +++    + K + +  
Sbjct: 46  IATWPVLLRLQKIMFGRRSLAVLVMTLLLVMVFIIPI-ALLVNSIVDGSGPLIKAISSGD 104

Query: 102 HGIPVPRWLSDIPGGMWASELWT--KHLSHPQSLKILSET--FLKTNGIDFIPRFASRFG 157
             +P   WL+ IP  +  ++L+    +L       I+++   ++ T    F+ + A+  G
Sbjct: 105 MTLPDLAWLNTIP--VIGAKLYAGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQ-AAHIG 161

Query: 158 MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG 217
             F+ +C     M++     Y  G  ++Q +      L          +  + IR+  LG
Sbjct: 162 R-FMVHC---ALMLLFSALLYWRGEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALG 217

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIF 276
           + + A+ + ++ G    ++GVP    L V+  +  ++  G  P+   A+ I+L   G+  
Sbjct: 218 VVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSCLVQLGPLPVLIPAI-IWLYWTGDTT 276

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
             T L +W  + +  +D  +RP L+     LP +    G++GG
Sbjct: 277 WGTVLLVWSGV-VGTLDNVIRPMLIRMGADLPLILILSGVIGG 318


>gi|298674448|ref|YP_003726198.1| hypothetical protein Metev_0489 [Methanohalobium evestigatum
           Z-7303]
 gi|298287436|gb|ADI73402.1| protein of unknown function UPF0118 [Methanohalobium evestigatum
           Z-7303]
          Length = 361

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 77/363 (21%), Positives = 161/363 (44%), Gaps = 34/363 (9%)

Query: 13  RWMIMFIILVSLYFLKGFF--APVLSALIIG----FTSWPIYSSFISKKEESSTFLAVIA 66
           +W I+  I V+L+FL   F   P+   +I+G    + S PIY      K       A++A
Sbjct: 16  KWKIIAAIAVALFFLAIIFILRPLADGIILGLVFAYISRPIYLKLNKNKRVG----ALVA 71

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT-K 125
           T+ ++   I  L      G+LE+ + ++ +V  NQ+ +     +S + G +   E+    
Sbjct: 72  TICIVIPIIFILGM----GILEIIQQITWIV-QNQNEV-----ISSLTGFINNVEIPDFL 121

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           H    QS++ +S++ +       I  +A    +IFL   L+++  II  +F   DG ++ 
Sbjct: 122 HTGIEQSIQDISQSIIPILREIGIVSYAKDL-VIFL---LNLVISIIVCYFLLSDGNTLY 177

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           Q++  +    +   ++     + K++   F+G    A+   ++    +++ G    +AL 
Sbjct: 178 QKVLDITPSNYQKTFQNYVTELDKILGGIFIGNAYAALFVSIMSAIVFYVFGFSHILALS 237

Query: 246 VITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT-LRPFLVGG 303
            +  I A++P  A  +    +++       I  A   FL  +I +++  +  +RP+L   
Sbjct: 238 ALIFIAAVVPLFAGYMVLLPLALLRYFNQGIEAALIFFLVASIVIYLPPELFMRPYLASL 297

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK-------ENKEKI 356
             K+  L      +GG    G+ G F  P+L+  +   ++  +  ++       +N +K 
Sbjct: 298 KSKVHPLLIMLAFIGGAFVGGIAGFFAAPILLGALIAAYRVYVSELRSYGYNLGQNTDKS 357

Query: 357 SSN 359
            +N
Sbjct: 358 ENN 360


>gi|302392163|ref|YP_003827983.1| hypothetical protein Acear_1408 [Acetohalobium arabaticum DSM 5501]
 gi|302204240|gb|ADL12918.1| protein of unknown function UPF0118 [Acetohalobium arabaticum DSM
           5501]
          Length = 355

 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 90/186 (48%), Gaps = 11/186 (5%)

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS-- 231
           +F+F +D   I   L S          K++ R + + + +T++G  +I      +LGS  
Sbjct: 176 VFYFLKDDHKIYYLLLSWFTEENKPQAKRMLREIDEAL-ATYIGTQLIV---AFILGSFM 231

Query: 232 --AYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
              Y L G+P+ +AL +I AI +++P   P      ++++ +  N      LF+  A+  
Sbjct: 232 FVGYLLIGLPNSLALALIIAITSLVPILGPALGILPALFVALTTNFLMIVKLFIVLAVAQ 291

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG-LFIGPVLMALIAVIWKESIMA 348
           ++    +RP + GG + +  L   F ++  +   G+LG LF+ P+ + +  +I  E+  A
Sbjct: 292 YLEGNLVRPIVQGGKLNIHPLVVLFLIIISILLFGVLGALFVVPIYVVVRIII--ENKTA 349

Query: 349 IKENKE 354
              NK+
Sbjct: 350 FYSNKQ 355


>gi|149280338|ref|ZP_01886459.1| permease [Pedobacter sp. BAL39]
 gi|149228887|gb|EDM34285.1| permease [Pedobacter sp. BAL39]
          Length = 367

 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 5/145 (3%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           K+I  I+ K I   FL M I+ +    VL    WL  V   V LG+IT I  +IP     
Sbjct: 191 KRIQYIIKKYITGLFLQMFIVTVLMIFVL----WLLNVKYAVLLGLITGIFNIIPYIGIF 246

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGG 319
           +   +S+ +           L +   + +  +D   L P +VG  +K+  L  F G+V G
Sbjct: 247 TALLISVLITFATAGVAKVLLVIIAFVAVHALDGNILMPLVVGSKVKINALFAFIGIVVG 306

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKE 344
               G+ G+F+    +A++ +I+  
Sbjct: 307 EMVWGISGMFLCIPYLAMLKIIFDR 331


>gi|212223162|ref|YP_002306398.1| hypothetical membrane protein, conserved, DUF20 family
           [Thermococcus onnurineus NA1]
 gi|212008119|gb|ACJ15501.1| hypothetical membrane protein, conserved, DUF20 family
           [Thermococcus onnurineus NA1]
          Length = 348

 Score = 41.2 bits (95), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 109/234 (46%), Gaps = 26/234 (11%)

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY---RDGFS 183
           L+ P   ++L   F++    +FIP+ +           +  + + I LF FY    +  S
Sbjct: 98  LAQPLPSEVLD--FIRNFSGEFIPKLSEYLSKQAFSLPMYPLQLFIFLFTFYYALANSTS 155

Query: 184 ISQQLD-SLGE---HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL---A 236
           I +Q+  SL E   HL     + +S+ +  ++R+  L    + + +G+++   + +   +
Sbjct: 156 IIEQIQLSLPEKNRHLGEEILQSVSKTLGALVRAWLL----LNVAKGVLMTFGFIIFDVS 211

Query: 237 GVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-- 292
            + + +  G +T + + +P   G  I   A + Y   +G   +A  + L+G    F+V  
Sbjct: 212 DIYTAIVAGFLTFLFSFVPLFEGWMIWLIAAA-YFAKEGMYLHAAGISLYG---FFLVSP 267

Query: 293 --DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             D  +RP +V     L     F G+VGG   MG+ GL IGP+++ L+  + KE
Sbjct: 268 MPDYIIRPLIVAKDTDLNETLVFIGMVGGTWAMGIKGLIIGPIVLNLLLTLLKE 321


>gi|153832787|ref|ZP_01985454.1| hipothetical membrane protein [Vibrio harveyi HY01]
 gi|148870921|gb|EDL69811.1| hipothetical membrane protein [Vibrio harveyi HY01]
          Length = 373

 Score = 41.2 bits (95), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 92/202 (45%), Gaps = 26/202 (12%)

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFY-----RDGFS-ISQQL-DSLGEHLFPAYW 200
           F+ + AS  G +   +   II  +IA  F       + GF+ ++ +L +  GE L     
Sbjct: 150 FLSQAASIVGSVSGGFIQFIISTMIAGAFMSNAEVCQKGFTKLADRLTNKKGEALIDLSK 209

Query: 201 KKISRIVPKVI-----RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
             +  +V  VI     +S   G+ ++A+G   V  +A W+  V   +A+  +  I+A+IP
Sbjct: 210 STVRSVVQGVIGVALIQSVMAGVGMVAVG---VPAAALWMVAVI-LIAIVQLPPILALIP 265

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                      IY+    +   A    +W  I +   D  L+P L+      P L T  G
Sbjct: 266 A---------IIYVFSVESTLVAGIFLVW-CILVSASDAVLKPVLLSRGSDTPMLVTLLG 315

Query: 316 LVGGVRTMGLLGLFIGPVLMAL 337
            +GG+   G++GLF+G V+++L
Sbjct: 316 ALGGMAMSGIVGLFVGAVVLSL 337


>gi|237718220|ref|ZP_04548701.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229452404|gb|EEO58195.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 360

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 77/345 (22%), Positives = 140/345 (40%), Gaps = 34/345 (9%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L G   P   A +I +  +P+   F  K    S  +++  ++ ++ +  V L +L    M
Sbjct: 31  LSGVLLPFFIAWLIAYMVYPLVKFFQYKLRLKSRIISIFCSLFLITVIGVTLFYLLVPPM 90

Query: 87  L----EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
           +     M +L+    L N  G  VP+ LS         E   +++      ++LSE  + 
Sbjct: 91  ISEIGRMNDLLVTY-LTNGAGNNVPKNLS---------EFIHENIDLQALNRVLSEENIL 140

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE---HLFPAY 199
               D +PR  +      L   L+I+F I+A F        I    +++ E   HL P  
Sbjct: 141 AAIKDTVPRVWT-----LLAESLNILFSILASFIILLYVIFILLDYEAIAEGWLHLLPNK 195

Query: 200 WKKI-SRIVPKV---IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           ++   S +V  V   +   F G  ++A   G++    + +   P  +ALG+    + M+P
Sbjct: 196 YRTFASNLVHDVQDGMNRYFRGQALVAFCVGILFSIGFLIIDFPMAIALGLFIGALNMVP 255

Query: 256 GGAPISFTAVSIYLLIKGN-------IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
               I F    +  ++K         I  A  L ++  +++ I D  L P ++G    L 
Sbjct: 256 YLQIIGFLPTILLAILKAADTGQNFWIIIACALAVFAIVQI-IQDTFLVPKIMGKITGLN 314

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                  L      MG+LG+ I   L  L+   ++  I+  ++NK
Sbjct: 315 PAIILLSLSIWGSLMGMLGMIIALPLTTLMLSYYQRFIINKEKNK 359


>gi|50085703|ref|YP_047213.1| PerM family permease [Acinetobacter sp. ADP1]
 gi|49531679|emb|CAG69391.1| putative permease (PerM family) [Acinetobacter sp. ADP1]
          Length = 396

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 121/278 (43%), Gaps = 52/278 (18%)

Query: 111 SDIPGGM-WASEL---WTKHLSHPQSLKILSET-------FLKTN-GIDFIPRFASRF-- 156
             IP G+ W +     W  H  + + ++I ++        +++TN   D I   A R   
Sbjct: 91  DSIPSGIHWVNATFLPWVSHTFNVERMEIDTDQISTVVMEYIQTNYSADSIQTMALRLAQ 150

Query: 157 -GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV----- 210
            G+ F+    +I+ + I  F+F  D     + L+SL   +   Y +   RIV +      
Sbjct: 151 SGLNFIQIGGTIVLIPIISFYFLLDW---DRMLNSLRRLIPRPYEESTLRIVYECHSVLG 207

Query: 211 --IRSTFL-----------GMTIIAIGEGLVLGSAYWLAGVPSHV--ALGVITAIMAMIP 255
             ++  FL           G+ +I +  GL++G    LA +  ++  A+G+I A++A + 
Sbjct: 208 AFVKGQFLVMLLLGIVYAVGLQLIGLEVGLIIGMVAGLASIIPYLGFAVGIIAAVIATV- 266

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                 F    + L + G +F      +  A+E +I    L+PFL+G  I L  +   F 
Sbjct: 267 ----FQFGVDWMQLALVGVVF-----MIGQAVEGYI----LQPFLLGDKIGLSPVAVVFA 313

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           ++ G +  G LG+ I   + A+I V+ +    A +  +
Sbjct: 314 VLAGAQLAGFLGMLIALPVAAVIVVLLRHLREAYEHTQ 351


>gi|169350364|ref|ZP_02867302.1| hypothetical protein CLOSPI_01131 [Clostridium spiroforme DSM 1552]
 gi|169293147|gb|EDS75280.1| hypothetical protein CLOSPI_01131 [Clostridium spiroforme DSM 1552]
          Length = 361

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 94/195 (48%), Gaps = 13/195 (6%)

Query: 167 IIFMIIALFFFYRDGF-SISQQLDSLG---EHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
           II++I+A++    + F SI Q + ++    +   P Y K+I   + + +++ F+G    A
Sbjct: 175 IIYVILAIYM--SNIFNSIRQTIKNIAIKIDCNLPIYLKEIDLSLVQYVKAFFIG----A 228

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF 282
           I + +     Y L G P+ + LGV++ + ++IP   PI    + +   +         L 
Sbjct: 229 IAQAITTMIMYVLIGHPNWLILGVVSGVSSIIPYVGPIIANCLGLITSLGMQSSTIIFLC 288

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +   I+  ++   + P +    I L  L   FG++ G    G++G+ I   L+  I +I+
Sbjct: 289 ILIFIQSIVMSYIITPRIYSSRIDLSILWVLFGILSGSSLFGIVGMIIAMPLLVSIKIIY 348

Query: 343 KESIMAIKENKEKIS 357
           +   +  + +++K+S
Sbjct: 349 Q---VYKEHHQDKLS 360


>gi|169830798|ref|YP_001716780.1| hypothetical protein Daud_0614 [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637642|gb|ACA59148.1| protein of unknown function UPF0118 [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 358

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 94/196 (47%), Gaps = 18/196 (9%)

Query: 167 IIFMI--IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK-----VIRSTFLGMT 219
           ++ MI  +A +FF RD    +++L        P  W   S ++ +      IR       
Sbjct: 170 VVLMITFVATYFFSRD----NEKLREAWIRAIPEPWGARSLLIVREGFGAFIRFFRAQFV 225

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNA 278
           +++I   + + +   + GVP  V++G++T I  ++P   P + F     + ++ G+   A
Sbjct: 226 LVSITTAITI-TGLLIIGVPYAVSIGIVTGIFDLLPILGPTTIFVPWIAWCVLTGSYSLA 284

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             LF+  AI LF V  +L   +V   + +  L     +  G++ MG+LGL +GP+L+   
Sbjct: 285 LKLFVLYAI-LFTVRASLEAKVVSMNLGIHPLAVLVAMYIGLKVMGILGLILGPILV--- 340

Query: 339 AVIWKESIMAIKENKE 354
            V+ + +I A K  +E
Sbjct: 341 -VVVQGAIKAGKRARE 355


>gi|207091774|ref|ZP_03239561.1| membrane protein [Helicobacter pylori HPKX_438_AG0C1]
          Length = 323

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 74/166 (44%), Gaps = 13/166 (7%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA-YWLAGVPSHVALGVITAIMAMIPG-GA 258
           KKI   V  ++R   L   I  I EG+  G    W        +LG++  + +++P  G 
Sbjct: 156 KKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFG--HDGWSLGILYGLASLVPAVGG 213

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLV--------GGPIKLPF 309
            + +  ++IY L  GN+  A  + L+  + +  ++D  ++P L+           +K+  
Sbjct: 214 ALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKRIFKTTLKINE 273

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 274 MLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 319


>gi|325689380|gb|EGD31385.1| permease [Streptococcus sanguinis SK115]
          Length = 360

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 108/254 (42%), Gaps = 15/254 (5%)

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           V +WL    G + +S+L  K L+     K L  + +    I  +         IF ++  
Sbjct: 117 VAKWLQQ-SGLLSSSQL--KDLT-----KQLQNSDIVNRAISLLGSLTGNISAIFGNF-F 167

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF----LGMTII 221
           S+I  I  +F F      +      L + + P    K    V  VI  T+    +G  I 
Sbjct: 168 SVIMSIFLMFAFLSSKEHLQTITSRLLQVMLPEKAVKRLSYVGSVIVETYDKFLMGQMIE 227

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA-TC 280
           A+  G+++  AY L G+P     GV+  +++ IP   P S  A+    +   + + A   
Sbjct: 228 AVIVGILVFIAYSLTGLPYAALTGVLAGVLSFIPYIGPFSACALGAIFIFTDSPWKALLS 287

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           + ++  ++L I    + P +VG  + LP L T    + G    GL+G+     + A+I  
Sbjct: 288 IAVFQGVQL-IEGNVIYPRVVGQSVGLPTLFTLAAALIGGNLFGLVGMIFFTPIFAVIYR 346

Query: 341 IWKESIMAIKENKE 354
           + +E ++  +E K 
Sbjct: 347 LVREFVVEKEEKKR 360


>gi|317010786|gb|ADU84533.1| hypothetical protein HPSA_02620 [Helicobacter pylori SouthAfrica7]
          Length = 360

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 76/166 (45%), Gaps = 15/166 (9%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA-YWLAGVPSHVALGVITAIMAMIPG-GA 258
           KK+   V  ++R   L   I  I EG+  G    W        +LG++  + +++P  G 
Sbjct: 193 KKVFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFG--HDGWSLGILYGLASLVPAVGG 250

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLV--------GGPIKLPF 309
            + +  ++IY L  G++  A  + L+  + +  ++D  L+P+L+           +K+  
Sbjct: 251 ALIWIPIAIYELYHGSVNGAIFIALYSILLISVLIDSVLKPYLIVFIKKRIFKTTLKINE 310

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK--ESIMAIKENK 353
           +  FF ++ G+   G  G+ +GP + A    + +  E+    KE +
Sbjct: 311 MLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQKEQE 356


>gi|56963356|ref|YP_175087.1| transporter [Bacillus clausii KSM-K16]
 gi|56909599|dbj|BAD64126.1| transporter [Bacillus clausii KSM-K16]
          Length = 358

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 102/231 (44%), Gaps = 31/231 (13%)

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           S+KI  E+F K  G+D I +   R    F+ + + + F++   F+  +D     + L  +
Sbjct: 141 SVKI--ESFAKA-GLDQIEQVIIRMLQSFMTWIV-VPFLV---FYLLKD----YELLKRV 189

Query: 192 GEHLFPAYWKK----ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
             +L P  W+K     +  V +   S   G  ++A   G++   A W+ GVP  + LG  
Sbjct: 190 AFYLTPRKWRKGLTAYANDVDRTFGSYVRGQLLVAFCVGVLSTVALWILGVPYPIVLGFF 249

Query: 248 TAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT----LRPFLV 301
                 IP  G    +  AV   LL       +T L L+  I L I+ +     L P +V
Sbjct: 250 VGATDFIPYFGAIIGAIPAVGAALL------ESTTLGLYTVIALVIIQQIEGNLLSPVIV 303

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           G  + L  +     L+ GV   G++GL I       +A I K +++ I+++
Sbjct: 304 GRTVHLHPMIIIIALLIGVEAGGIVGLLIA----VPVAAILKVTVVHIRQS 350


>gi|254422704|ref|ZP_05036422.1| conserved domain protein, putative [Synechococcus sp. PCC 7335]
 gi|196190193|gb|EDX85157.1| conserved domain protein, putative [Synechococcus sp. PCC 7335]
          Length = 353

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 12/136 (8%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           ++I+  V       F G  +++I  G+     + L GVP    L VI  +  +IPG GA 
Sbjct: 192 RRITETVQDSFLGFFWGRLLLSIFFGVSTFVVFLLLGVPYAPTLAVIAGVFDLIPGIGAT 251

Query: 260 ISFTAVSIYLLIKGNIFNAT-----CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           +  + +S++LL + +I  AT     C+ L    E  ++ + ++  L   P+ +     FF
Sbjct: 252 LGVSLISLFLLSQ-SILLATQSIVICVVLQQVEENLLLPRIMKDSLNINPVVM-----FF 305

Query: 315 GLVGGVRTMGLLGLFI 330
            L+ G R  G+LG+F+
Sbjct: 306 ALIVGARIAGVLGIFL 321


>gi|306833219|ref|ZP_07466348.1| membrane protein [Streptococcus bovis ATCC 700338]
 gi|304424586|gb|EFM27723.1| membrane protein [Streptococcus bovis ATCC 700338]
          Length = 395

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 96/212 (45%), Gaps = 13/212 (6%)

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           +E+F K N ID+   FAS    +     ++II     LF+F RD     +  + L + L 
Sbjct: 164 AESFSK-NAIDWASNFASAIARV----TVAIIMSPFILFYFLRDS---GKMKEGLLKTLP 215

Query: 197 PAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
               + ISR+   + K +     G   +AI  G++    + + G+      G+I   + M
Sbjct: 216 TRMRRPISRVLGDINKQLAGYVQGQVTVAIVVGIIFTIFFNIIGLRYAATFGIIAGFLNM 275

Query: 254 IPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP  G+ ++   V I  +++G I     L  +  IE  I  + + P ++G  + +  +  
Sbjct: 276 IPYLGSFLAMVPVVIMGVVQGPIMLIKVLIAF-VIEQTIEGRFVSPLVLGSKLSIHPITI 334

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            F L+      G+ G+F+G  + A I V+ KE
Sbjct: 335 MFILLTSGAMFGVWGVFLGIPIYASIKVVVKE 366


>gi|302877845|ref|YP_003846409.1| hypothetical protein Galf_0603 [Gallionella capsiferriformans ES-2]
 gi|302580634|gb|ADL54645.1| protein of unknown function UPF0118 [Gallionella capsiferriformans
           ES-2]
          Length = 352

 Score = 40.8 bits (94), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 102/216 (47%), Gaps = 29/216 (13%)

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           LSH QS   ++E  L        P  +S  G I L+  ++++ + +A+F+F RDG  +S 
Sbjct: 128 LSHWQSAGGVAEKLL--------PWLSSSGGKI-LNVAMNLLLIPVAMFYFLRDGGLMSA 178

Query: 187 QLDSLGEHLFPAYWK--------KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           + D+    L P +W         ++ R++ + +R     M +++    LVL    W  G+
Sbjct: 179 KFDA----LIPRHWHAKVCEISAEVDRVLAEFLRGQISVMLLMSAFYSLVL----WAVGL 230

Query: 239 PSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTL 296
              + +G++  ++  IP  G  I     ++  +++ +  + + +++WG      +++ TL
Sbjct: 231 EFALPIGIVAGMLVFIPYLGMVIGLLLATLAAVMQFSELS-SVVWVWGVFGAGQMLEGTL 289

Query: 297 -RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
             P+LVG  I L  L   F L+   +  G  G+ + 
Sbjct: 290 VTPWLVGERIGLHPLAVIFALLAFGQLFGFFGVLLA 325


>gi|29347686|ref|NP_811189.1| putative permease [Bacteroides thetaiotaomicron VPI-5482]
 gi|29339587|gb|AAO77383.1| putative permease [Bacteroides thetaiotaomicron VPI-5482]
          Length = 377

 Score = 40.8 bits (94), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 141/351 (40%), Gaps = 38/351 (10%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L G   P   A +I +  +P+   F  K    S  +++  ++ ++ L  V L +L    M
Sbjct: 31  LSGVLLPFFIAWLIAYMVYPLVKFFQYKLRLKSRIVSIFCSLFLITLVGVSLFYLLVPPM 90

Query: 87  L----EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
           +     M +L+    L N  G  VP+ LS         E   +++      +ILSE  + 
Sbjct: 91  ISEIGRMNDLLV-TYLTNGAGNNVPKNLS---------EFIHENIDLQALNRILSEENIL 140

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE---HLFPAY 199
               D +PR  +      L   L+I+F I+A F        I    + + E   HL P  
Sbjct: 141 AAIKDTVPRVWA-----LLAESLNILFSILASFIILLYVIFILLDYEVIAEGWLHLLPNK 195

Query: 200 WKKI-SRIVPKV---IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           ++   S +V  V   +   F G  ++A   G++    + +   P  +ALG+    + M+P
Sbjct: 196 YRTFASNLVHDVQDGMNRYFRGQALVAFCVGILFSIGFLIIDFPMAIALGLFIGALNMVP 255

Query: 256 GGAPISFTAVSIYLLIKGN-------IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
               I F    +  ++K         I  A  L ++  +++ I D  L P ++G    L 
Sbjct: 256 YLQIIGFLPTVLLAILKAADTGENFWIIIACALAVFAIVQI-IQDTFLVPKIMGKITGLN 314

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                  L      MG+LG+ I   L  L+   ++  I+    NKE+I  +
Sbjct: 315 PAIILLSLSIWGSLMGMLGMIIALPLTTLMLSYYQRFII----NKERIKYD 361


>gi|239828018|ref|YP_002950642.1| sporulation integral membrane protein YtvI [Geobacillus sp. WCH70]
 gi|239808311|gb|ACS25376.1| sporulation integral membrane protein YtvI [Geobacillus sp. WCH70]
          Length = 372

 Score = 40.8 bits (94), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 148/346 (42%), Gaps = 34/346 (9%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           +LY++     P + A  I F   P+   F+  K +   +LAVI T+ V+   +  L+ L 
Sbjct: 25  ALYYVSTVTYPFIIAFFIAFLINPLVD-FLETKTKMPRWLAVIVTLIVLFAIVAGLVTLL 83

Query: 83  YYGMLEMKELVSKVVLAN-------------QHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              ++   + ++ VV  N             Q  IP+   L+ +   + AS+  T  +++
Sbjct: 84  IAEIVSGTQYLANVVPENFQKLITYMETLVAQQIIPLYNDLAVLFKNLDASQQDTI-INN 142

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFL---DYCLSIIFMIIALFFFYRDGFSISQ 186
            Q++     T + T    FI        ++     +     IF ++A FF  +D +    
Sbjct: 143 IQAVG----TQIATTVGQFIQHVLQNIPLLLAWLPNAATVFIFSLLATFFISKDWY---- 194

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM-----TIIAIGEGLVLGSAYWLAGVPSH 241
           +L  + + + PA  +K  + V   ++    G      T+I+I   +VL     L  V   
Sbjct: 195 RLTGIAQKILPAKARKSGKTVFLDLKKALFGFIKAQATLISITTVIVLIGLLILR-VNYA 253

Query: 242 VALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           + + +I  I+ ++P  G  I F    IY  + G++  A  L +   I + +  + + P +
Sbjct: 254 ITIALIIGIVDILPYLGTGIVFVPWIIYAAVSGDVPFAIGLGVL-YIVVLVQRQIMEPKV 312

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           +   I L  L T   L  G + +G LGL IGPV + +I  +   ++
Sbjct: 313 LSSSIGLDPLATLVALFVGFKLIGFLGLIIGPVTLVIIRTLHSANV 358


>gi|239826942|ref|YP_002949566.1| hypothetical protein GWCH70_1491 [Geobacillus sp. WCH70]
 gi|239807235|gb|ACS24300.1| protein of unknown function UPF0118 [Geobacillus sp. WCH70]
          Length = 340

 Score = 40.8 bits (94), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 96/223 (43%), Gaps = 27/223 (12%)

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS-------QQLDSLGEHLFP 197
           G+ ++ ++ S    I L   L+   +I++LFF       IS        ++ S  + L  
Sbjct: 131 GMTYLIKYFSDISSIGLQILLA---LILSLFFLLEKERIISFTNRFKYSKISSFYDEL-E 186

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
            + KK +R   KVI + F    +IA    ++  +  W+ G P    LG++   + +IP  
Sbjct: 187 YFGKKFARTFGKVIEAQF----VIATINMIITVACLWMMGFPQLFGLGILIFFLGLIPVA 242

Query: 258 A------PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
                  P+ F A SI     G +     + +  A+   +    L P L+     LP   
Sbjct: 243 GVIISLFPLCFIAYSI-----GGVMKVVYVLIMIAVVHALEAYVLNPKLMSSKTNLPVFY 297

Query: 312 TFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENK 353
           TF  L+      G+ GL +G PV + ++ V+  +++   ++++
Sbjct: 298 TFIVLIFSEHFFGVWGLILGIPVFVFILDVLGVKTVQGKRDDE 340


>gi|89514122|gb|ABD74918.1| hypothetical protein [Sinorhizobium fredii]
          Length = 122

 Score = 40.8 bits (94), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 58/99 (58%)

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  +  G +T +++ +P   P+ + +V++ L I+G ++ +  +  WG + +  +D  + P
Sbjct: 1   PQALLFGFLTFVLSFVPIDPPLVWGSVALGLFIRGAVWWSFFVAAWGLLLVSSIDNVIGP 60

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           +++G     P L  FFG +GGV   G +G+F+GP L+A+
Sbjct: 61  YVLGKTDNRPVLLGFFGFLGGVVAFGFIGIFLGPTLLAV 99


>gi|152977617|ref|YP_001377134.1| hypothetical protein Bcer98_3955 [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152026369|gb|ABS24139.1| protein of unknown function UPF0118 [Bacillus cytotoxicus NVH
           391-98]
          Length = 347

 Score = 40.8 bits (94), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 72/162 (44%), Gaps = 6/162 (3%)

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GG 257
           + KK +R   KVI + FL    IAI   ++   A W+ G P  + L ++  ++ +IP  G
Sbjct: 190 FGKKFARSFGKVIEAQFL----IAIVNCVLSVIALWILGFPQLLGLSLMIFLLGLIPVAG 245

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
             IS   + +     G+I     + +  A+   +    L P  +     LP   TF  L+
Sbjct: 246 VIISLFPLCMIAYNIGSITYVIYILIIVAVIHALESYVLNPKFMSQKTNLPIFYTFMVLI 305

Query: 318 GGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKEKISS 358
                +G+ GL IG PV M L+ V+   S    K   EKI S
Sbjct: 306 FSEHFLGVWGLIIGIPVFMFLLDVLDVTSDEIEKGANEKIES 347


>gi|15895697|ref|NP_349046.1| permease [Clostridium acetobutylicum ATCC 824]
 gi|15025448|gb|AAK80386.1|AE007743_8 Predicted permease [Clostridium acetobutylicum ATCC 824]
 gi|325509847|gb|ADZ21483.1| permease [Clostridium acetobutylicum EA 2018]
          Length = 339

 Score = 40.8 bits (94), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 94/213 (44%), Gaps = 31/213 (14%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ--------QLDSLGEHL 195
            G+ +I  FA  FG + L+  L+    +++LFF    G +I +        +L ++ E+ 
Sbjct: 136 QGLSYIIEFAKNFGKVSLNLFLA---FVLSLFFVLEKG-TIKKFGKKFEKSKLSTMYEY- 190

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F  Y         KVI++  L    IAI   ++   A  + G P+ + LG +  ++++IP
Sbjct: 191 FVYYGNNFLNSFGKVIKAQIL----IAIVNAVLSSIALAIMGFPNLMTLGFMIFVLSLIP 246

Query: 256 GG------APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT-LRPFLVGGPIKLP 308
                    P+SF A +I      N F      +   + +  ++   L P L+    KLP
Sbjct: 247 VAGVIISLVPLSFIAFNI------NGFTEVIYVILMVVVIHCIESYFLNPKLMSSKTKLP 300

Query: 309 FLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAV 340
              TF  L+     MG  GL +G P+ M L+ V
Sbjct: 301 IFFTFIILIVSGDFMGTWGLLLGIPLFMFLLDV 333


>gi|206579747|ref|YP_002240299.1| hypothetical protein KPK_4500 [Klebsiella pneumoniae 342]
 gi|288937004|ref|YP_003441063.1| hypothetical protein Kvar_4154 [Klebsiella variicola At-22]
 gi|206568805|gb|ACI10581.1| putative membrane protein [Klebsiella pneumoniae 342]
 gi|288891713|gb|ADC60031.1| conserved hypothetical protein [Klebsiella variicola At-22]
          Length = 366

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 19/146 (13%)

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            ++R+    IR+   G+  +A+ + L++G    +A +P   A+G+   I+A+I G A + 
Sbjct: 210 TLTRLCTSTIRAVAQGVIGVALIQALLVGVIMLMASIP---AVGIFF-ILALILGIAQVP 265

Query: 262 F---TAVSIYLL-------IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
               TA +I L+          +IF    L + G     + D  L+P L+G  +  P   
Sbjct: 266 VILVTAPAIALMWSLGTHSTGMDIFYTILLIVAG-----MADNVLKPLLLGRGVDAPMPV 320

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMAL 337
              G +GG+ + G+LG+F+G  L+A+
Sbjct: 321 VLLGALGGMASNGILGMFLGATLLAI 346


>gi|89890618|ref|ZP_01202128.1| conserved hypothetical transmembrane protein [Flavobacteria
           bacterium BBFL7]
 gi|89517533|gb|EAS20190.1| conserved hypothetical transmembrane protein [Flavobacteria
           bacterium BBFL7]
          Length = 340

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 1/125 (0%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
            +++S  +G+ ++A+ +G+V    Y++ GV +     VIT I +MIP  G  +    V+I
Sbjct: 192 DLVKSNAIGIPLVALLQGIVALIGYFIFGVENPFFWFVITVIGSMIPFVGTALGILPVTI 251

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            L  +G    A  + ++G I +   D   R  +      +  L T  G+V GV   G +G
Sbjct: 252 LLFSQGETAAAIGILIYGVIVVGSTDNLFRLVVQKRLADVHPLVTLIGVVVGVPLFGFIG 311

Query: 328 LFIGP 332
           L  GP
Sbjct: 312 LIFGP 316


>gi|307637250|gb|ADN79700.1| acid membrane antigen A [Helicobacter pylori 908]
 gi|325995842|gb|ADZ51247.1| Acid membrane antigen A [Helicobacter pylori 2018]
 gi|325997436|gb|ADZ49644.1| putative membrane protein [Helicobacter pylori 2017]
          Length = 349

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 75/166 (45%), Gaps = 15/166 (9%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA-YWLAGVPSHVALGVITAIMAMIPG-GA 258
           KKI   V  ++R   L   I  I EG+  G    W        +LG++  + +++P  G 
Sbjct: 182 KKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFG--HDGWSLGILYGLASLVPAVGG 239

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLV--------GGPIKLPF 309
            + +  ++IY L  G++  A  + L+  + +  ++D  ++P L+           +K+  
Sbjct: 240 ALIWIPIAIYELYHGHVNEAIFIVLYSILLIGVLIDSVIKPILIVFIKKRIFKTTLKINE 299

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK--ESIMAIKENK 353
           +  FF ++ G+   G  G+ +GP + A    + +  E+    KE K
Sbjct: 300 ILIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQKEQK 345


>gi|256370809|ref|YP_003108634.1| lysyl-tRNA synthetase [Candidatus Sulcia muelleri SMDSEM]
 gi|256009601|gb|ACU52961.1| lysyl-tRNA synthetase [Candidatus Sulcia muelleri SMDSEM]
          Length = 497

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 11/156 (7%)

Query: 110 LSDIPGGMWASELWTKH--LSHPQSLKILSETFLKT---NGIDFIPRFASRFGMIFLDYC 164
           L  IPGG  A    T H  L+ P  L+I +E FLK     G++ +  F+  F    +D  
Sbjct: 206 LQSIPGGAIARPFITHHNALNIPLYLRISNELFLKKLIVGGLESVYEFSRNFRNEGIDKN 265

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHL-FPAYWKKISRIVPKVI--RSTFLGMTII 221
            +  F I+ L+  Y+D F +   ++ L E+L    Y KK+ +I  K+I  ++ F  +TI+
Sbjct: 266 HNPEFTILELYVSYKDYFWMMNFIEKLLEYLCIKLYNKKLLKINNKLISFKTPFKKITIL 325

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
              + +   + + L+G+       +   +   I   
Sbjct: 326 ---DSIKENTGFDLSGLNEKNIRNICKKLQLKIDKN 358


>gi|75908944|ref|YP_323240.1| hypothetical protein Ava_2732 [Anabaena variabilis ATCC 29413]
 gi|75702669|gb|ABA22345.1| Protein of unknown function UPF0118 [Anabaena variabilis ATCC
           29413]
          Length = 345

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 23/178 (12%)

Query: 192 GEHLFPAYWKKISRIVPK--------VIRSTFLGMTIIAIGEGLVLGSA----YWLAGVP 239
           GE L    W    +I+P+        ++R +FLG     +   L L S+    + L  VP
Sbjct: 178 GEKL----WNFTLKIIPQKRRIRFTNIMRRSFLGFFRGQLLLCLFLTSSTFIIFLLLQVP 233

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             + L VI  I+ +IPG GA +    +++ +L   +++ A  + +   +   I D  + P
Sbjct: 234 FALILSVIVGILDIIPGIGATLGVGTITLIVL-SQDVWLALKVLVACVVLQQIQDNLISP 292

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            ++ G + L  +  FF L+ G R  GLLG+FI   +  +I      S+  I E K ++
Sbjct: 293 RIMQGALNLNPVVVFFALLVGARVAGLLGVFISIPITGVIV-----SLFEIDEMKSEV 345


>gi|313125203|ref|YP_004035467.1| permease [Halogeometricum borinquense DSM 11551]
 gi|312291568|gb|ADQ66028.1| predicted permease [Halogeometricum borinquense DSM 11551]
          Length = 396

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 88/387 (22%), Positives = 158/387 (40%), Gaps = 58/387 (14%)

Query: 14  WMIMFIILVSLYFL-KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           W++   I V L F+   F    +  L + + + P+YS    +  + S    + A V+++ 
Sbjct: 17  WVLGVAIFVVLAFVADAFLGTFMLGLFLYYATRPVYSRIRGRIGQPS----IGAAVALLV 72

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGI--PVPRWLSDIPGGMWASELWTKHLSHP 130
           L +  +L + Y  ++ ++EL S  V  NQ GI   +  +L         SEL    L +P
Sbjct: 73  LSLPVVLLVNYTVLIAVQEL-SAFVGQNQQGILAALKPYLGSFESLQAPSELLATLLENP 131

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ-QLD 189
             L  +++T      +  I   AS      LD    +       F+  RD   +S    +
Sbjct: 132 SELVDMTDTATVEAVLSSIAGTAS----FILDAAFQLFIAFAFAFYLLRDDRRLSAWTRE 187

Query: 190 SLGEH--LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--------VP 239
           +L  H  +  AY   + R     +R+ + G  + A    ++   +Y            +P
Sbjct: 188 NLSGHGGVMDAYMTAVDRD----LRTIYFGNILNAFAIAVIAAVSYNAINLFAPPSLWIP 243

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFL---WGAIELFIVDKT 295
           S   LG +T   ++IP  G  I +  V++ L ++  +      ++   +GA+ L +VD  
Sbjct: 244 SPTLLGALTGAASLIPVVGMKIVYVPVTVLLAVEAALTAPDAFWVALAYGAVSLVVVDTI 303

Query: 296 ----LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW--------- 342
               LRP++ G    L      F  + G    G  GLF+GP+L+ +IAV +         
Sbjct: 304 PDFLLRPYVSGR--NLHTGTVMFAYIIGPALFGWYGLFLGPLLL-VIAVHFVRIVLPELV 360

Query: 343 -----------KESIMAIKENKEKISS 358
                      +  + AI + ++KIS 
Sbjct: 361 TGEPLKPDARGRNPLSAIDDEQQKISD 387


>gi|229827713|ref|ZP_04453782.1| hypothetical protein GCWU000182_03102 [Abiotrophia defectiva ATCC
           49176]
 gi|229787912|gb|EEP24026.1| hypothetical protein GCWU000182_03102 [Abiotrophia defectiva ATCC
           49176]
          Length = 385

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 34/168 (20%), Positives = 78/168 (46%), Gaps = 12/168 (7%)

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL----AGVPSHVALGVITAIM 251
           F  +W++ + I+ +     ++   II   +G+++G A ++    AG+P  V + ++  + 
Sbjct: 219 FAGFWERCNSILIR-----YIAFDII---DGIIVGVANFIFMSIAGIPYSVLISLVVGVT 270

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            + P   PI    +  ++L+  N  +A    ++  I   I    L+P L GG + +P + 
Sbjct: 271 NLAPTFGPIVGAIIGGFVLVLVNPLHALWFIIFTIILQTIDGYVLKPKLFGGSLGVPGVW 330

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
               ++ G R +G+ G+ +     A++  I+ + I      +E++   
Sbjct: 331 ILISIIVGSRILGVTGILLAIPFAAIVDFIYHDLIFQGARKREELEKQ 378


>gi|332171189|gb|AEE20444.1| protein of unknown function UPF0118 [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 345

 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 4/158 (2%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAP 259
           K I +    +++S  +G+ ++A+ +G V    + + GV        I  + +MIP  G  
Sbjct: 184 KLIGKDSVDLVKSNAIGIPLVALLQGAVALIGFLILGVEDPFFWFAIVTVGSMIPFVGTA 243

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           +    V I L   G+++ +  L L+G I +   D   R  +      +  L T  G++ G
Sbjct: 244 LGVIPVCIILYAAGDVWQSIVLALYGIIVVGSTDNLFRLVIQKRLADVHPLVTIIGVIVG 303

Query: 320 VRTMGLLGLFIGPVLMA---LIAVIWKESIMAIKENKE 354
           V   G +GL  GP++++   LI  I+K        NKE
Sbjct: 304 VPLFGFIGLIFGPIVVSIFLLIVKIYKHEYGKEISNKE 341


>gi|326800764|ref|YP_004318583.1| hypothetical protein Sph21_3375 [Sphingobacterium sp. 21]
 gi|326551528|gb|ADZ79913.1| protein of unknown function UPF0118 [Sphingobacterium sp. 21]
          Length = 372

 Score = 40.4 bits (93), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 14/164 (8%)

Query: 188 LDSLGEHLFPAYWK---KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           ++S  E+  P  ++   +I  I+ + +   FL M I+ I   L    A++  GV     L
Sbjct: 178 VNSFKENHSPVVYEIVYQIQYIIKRYVVGLFLQMLIVTILACL----AFYFIGVKYSFLL 233

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT----LRPFL 300
           G+IT I  +IP      FTA+ I +LI      AT + L+  I L ++       + P +
Sbjct: 234 GLITGIFNIIPYVGI--FTALVITVLITFATSTATNV-LFVVIALVVIHAVDGNYIMPKI 290

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           VG  +++  L    GLV G    G+ G+F+   ++A++ V++  
Sbjct: 291 VGSKVQINTLIALIGLVLGEMLWGITGMFLSIPIIAIMKVVFDR 334


>gi|300867990|ref|ZP_07112629.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300334011|emb|CBN57807.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 402

 Score = 40.4 bits (93), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 11/168 (6%)

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           +SL E L P + K  S  +    ++ F G  IIA      L SA+    VP  +  G+  
Sbjct: 204 ESLIEWLPPRFQKPFSETLRLSFQNYFTGQLIIATCMAFGLTSAFIFLKVPFGLLFGLTI 263

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF---IVDKTLRPFLVGGPI 305
            +MA++P G  +    V+I + ++        L    A+EL    IV+  + P ++G   
Sbjct: 264 GLMALVPFGGSVGIGLVTILVALQNIGLGLQVL----AVELIVQQIVENLIAPRVLGSVT 319

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L     F  ++ G R  G    F+G V+    AV+ KE++ A++  K
Sbjct: 320 GLNPFWVFVSILTGARVGG----FLGVVIAVPAAVVIKEALAAVRSEK 363


>gi|326424274|ref|NP_762641.2| putative permease [Vibrio vulnificus CMCP6]
 gi|319999660|gb|AAO07631.2| Predicted permease [Vibrio vulnificus CMCP6]
          Length = 360

 Score = 40.4 bits (93), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 4/137 (2%)

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI--PGGAP 259
            + ++    +R   +G+  IA    ++ G+   LAGVP+     +I  + A++  P    
Sbjct: 209 SLHKLTTATLRQVAVGIIGIAFLTAMIFGAIVALAGVPAASLFTLIALVFAIVQLPVTVV 268

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                  ++    G   NA    L   I    +D  L+P ++G  + +P      G VGG
Sbjct: 269 ALVAVAVLWSGDSGTAHNAIFTVL--IIAASFIDNFLKPIILGRGLDVPMPIILIGAVGG 326

Query: 320 VRTMGLLGLFIGPVLMA 336
           V + G+LG+F+G   +A
Sbjct: 327 VMSGGILGMFVGAAFLA 343


>gi|229062085|ref|ZP_04199410.1| hypothetical protein bcere0026_41570 [Bacillus cereus AH603]
 gi|228717237|gb|EEL68912.1| hypothetical protein bcere0026_41570 [Bacillus cereus AH603]
          Length = 361

 Score = 40.4 bits (93), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 26/172 (15%)

Query: 188 LDSLGE--HLF----PAYWKKISRIVPKVIR----STFLGMTIIAIGEGLVLGSAYWLAG 237
           L   GE  H+F    P+ W+   +++ K I     S   G   + +  G V   ++W  G
Sbjct: 185 LKDYGEFYHIFWKLVPSKWRSTGQMLAKEIDKSLGSYIRGQLFVCLVLGGVSVLSFWFIG 244

Query: 238 VPSHVALGVITAIMAMIP------GGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIEL 289
           +   + LG+I  +  +IP      G  P    A  VS  LLIK  I  A   FL   I  
Sbjct: 245 MKYPLLLGIIIGVTDIIPYFGPILGAIPTLMIAATVSTSLLIKAGIMIAILQFLESNI-- 302

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                 L P++VG  +++  +   F L+ G    G++GL I   ++A+I  +
Sbjct: 303 ------LSPYIVGKSLRMHPVIIMFALLVGGEVAGIVGLLISVPILAVIRTV 348


>gi|269959791|ref|ZP_06174170.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835545|gb|EEZ89625.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 373

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 4/191 (2%)

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
           F+ + AS  G +   +   II  +IA   F  +     +    L + L     + +  + 
Sbjct: 150 FLSQAASIVGSVSGGFIQFIISTMIA-GAFMSNAEVCQKGFTKLADRLTNKKGEALIDLS 208

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI-SFTAVS 266
              +RS   G+  +A+ + ++ G      GVP+  AL ++  I+  I    PI       
Sbjct: 209 KSTVRSVVQGVIGVALIQSVMAGVGMVAVGVPAA-ALWMVAVILIAIVQLPPILXLIPAI 267

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           IY+    +   A    +W  I +   D  L+P L+      P L T  G +GG+   G++
Sbjct: 268 IYVFSVESTLVAGIFLVW-CILVSASDAVLKPVLLSRGSDTPMLVTLLGALGGMAMSGIV 326

Query: 327 GLFIGPVLMAL 337
           GLF+G V+++L
Sbjct: 327 GLFVGAVVLSL 337


>gi|325693704|gb|EGD35623.1| permease [Streptococcus sanguinis SK150]
          Length = 366

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 112/259 (43%), Gaps = 15/259 (5%)

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           V +WL    G + +S+L  K L+     K L  + +    I  +         IF ++  
Sbjct: 117 VAKWLQQ-SGLLSSSQL--KDLT-----KQLQNSDIVNRAIYLLGSLTGNISAIFGNF-F 167

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF----LGMTII 221
           S+I  I  +F F      +      L + + P    K    V  VI  T+    +G  I 
Sbjct: 168 SVIMSIFLMFAFLSSKEHLQTITSRLLQVMLPEKAVKRLSYVGSVIVETYDKFLMGQMIE 227

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA-TC 280
           A+  G+++  AY L G+P     GV+  +++ IP   P S  A+    +   + + A   
Sbjct: 228 AVIVGVLVFIAYSLTGLPYAALTGVLAGVLSFIPYIGPFSACALGAIFIFTDSPWKALLS 287

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           + ++  ++L I    + P +VG  + LP L T    + G    GL+G+     + A+I  
Sbjct: 288 IAVFQGVQL-IEGNVIYPRVVGQSVGLPTLFTLAAALIGGNLFGLVGMIFFTPIFAVIYR 346

Query: 341 IWKESIMAIKENKEKISSN 359
           + +E ++  +E K + S++
Sbjct: 347 LVREFVVEKEEKKAEGSAS 365


>gi|254410689|ref|ZP_05024468.1| conserved domain protein, putative [Microcoleus chthonoplastes PCC
           7420]
 gi|196182895|gb|EDX77880.1| conserved domain protein, putative [Microcoleus chthonoplastes PCC
           7420]
          Length = 367

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 8/195 (4%)

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
            L ++ +II+ F+  + G  + +   SL E L     +  S  +    ++ F+G  IIA 
Sbjct: 169 VLDVLLIIISTFYLLQHGREVWR---SLIEWLPNKVQRSASNTLRLSFQNYFIGQIIIAT 225

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
                L S + L  VP  +  G    +MA++P G  +    V++ + ++        L +
Sbjct: 226 CMASGLISLFILLKVPFGLLFGFTIGVMALVPFGGSVGIALVTLLVALRDIGLGVQVLAV 285

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              +   +V+  L P + G    L     F  L+ GVR  GLLG+ +        AV+ K
Sbjct: 286 -AVVFQQLVENLLAPRIFGRVTGLNPFWVFISLLIGVRVGGLLGVIVA----VPTAVVIK 340

Query: 344 ESIMAIKENKEKISS 358
           E+++ +++ ++  ++
Sbjct: 341 EALVEVRKARKDRNT 355


>gi|73670231|ref|YP_306246.1| hypothetical protein Mbar_A2764 [Methanosarcina barkeri str.
           Fusaro]
 gi|72397393|gb|AAZ71666.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 346

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 68/131 (51%), Gaps = 6/131 (4%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSI 267
           K++R+T +    +A+ +G +L   + +  +      G I AI++ +P  GAP  +   +I
Sbjct: 201 KIVRTTLIASGAVALVQGGILTIVFVIFNIQGAFLWGFIAAILSFLPVVGAPFIWVPATI 260

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG--GPIKLPFLPTFFGLVGGVRTMGL 325
               + + + A    L   I + ++D  LRP +    G I  PFL +  G+V GV   GL
Sbjct: 261 VQFFQKD-YTAAIAILAAGIFISVIDNFLRPIIQKRVGEIH-PFL-SLLGVVIGVSLFGL 317

Query: 326 LGLFIGPVLMA 336
           LG+ IGP+L++
Sbjct: 318 LGIVIGPLLLS 328


>gi|254481333|ref|ZP_05094578.1| hypothetical protein GPB2148_1806 [marine gamma proteobacterium
           HTCC2148]
 gi|214038496|gb|EEB79158.1| hypothetical protein GPB2148_1806 [marine gamma proteobacterium
           HTCC2148]
          Length = 337

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 78/163 (47%), Gaps = 5/163 (3%)

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
           P    K+  +     RS  +G+  +A+ + +++G  + L GVP+   L +I  ++A++  
Sbjct: 169 PEQGPKMHNLATMTTRSVAVGVLGVAVIQAVLMGLIFILIGVPAAGLLALIIMMLAIVQ- 227

Query: 257 GAPISFTAVSIYLLI-KGNIFNATCLFLWGAIELF--IVDKTLRPFLVGGPIKLPFLPTF 313
             P     + + + +  G    AT    W  + L   + D  L+P L+G  +  P     
Sbjct: 228 -LPAMLVGIPVIIWVWNGGDAGATMNTFWTVVILVSGLADNVLKPLLLGRGVDAPMPVIL 286

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            G +GG+ + G +GLFIG V++A+   I+ + +   +E  E +
Sbjct: 287 IGALGGMISAGFIGLFIGAVVLAVGYQIFMQWVAEHEEELETM 329


>gi|154252605|ref|YP_001413429.1| hypothetical protein Plav_2158 [Parvibaculum lavamentivorans DS-1]
 gi|154156555|gb|ABS63772.1| protein of unknown function UPF0118 [Parvibaculum lavamentivorans
           DS-1]
          Length = 387

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 48/264 (18%), Positives = 103/264 (39%), Gaps = 32/264 (12%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++  +  +  + +  IL + Y  +   AP+ +A++  F   P+       +     F
Sbjct: 31  RARIMRAETALAILAVLAILYTAYLAQNLVAPITAAVVGSFIFMPLM------RAAPLRF 84

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           L    + S++   ++  L    Y + E                P   W + IP  +   E
Sbjct: 85  LPDALSASIIVATLIGALAGSVYLLAE----------------PAAEWTARIPAAIEEFE 128

Query: 122 LWTKHLSHP-QSLKILSETFLKTNGIDFIPR--------FASRFGMIFLDYCLSIIFMII 172
             ++ LS P  +++  S+   +    D  PR          ++   +      SI+  I+
Sbjct: 129 EKSRELSEPMAAMRRASKQVEEMTRADDAPREVVVRDEGLVAQAMEVAGQKGASILIFIV 188

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFP-AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
            L+F    G  +  ++    + L      ++I R + + I +    +++I  G G+ +G 
Sbjct: 189 LLYFLLATGELLRDRIIRSAKRLTDKERARRILRSIEREISTYLFSISLINAGLGVAIGL 248

Query: 232 AYWLAGVPSHVALGVITAIMAMIP 255
           + W  G+P+ +  G   A++  IP
Sbjct: 249 SMWAIGLPNALLWGFAAALLNFIP 272


>gi|307309747|ref|ZP_07589398.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
 gi|306899849|gb|EFN30473.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
          Length = 381

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 5/84 (5%)

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
           F    LF    I L I+D  ++P LV   +  P L    G++GG  + GL+GLF+GP+++
Sbjct: 290 FGMAALFTILLIPLLIIDNVMKPILVARGLSTPTLVILLGVLGGTLSYGLIGLFLGPIVL 349

Query: 336 ALIAVIWKESIMAIKENKEKISSN 359
           ++       S++ I  N + + S 
Sbjct: 350 SVF-----HSLLVIWMNTDTVGSE 368


>gi|57641097|ref|YP_183575.1| hypothetical protein TK1162 [Thermococcus kodakarensis KOD1]
 gi|57159421|dbj|BAD85351.1| hypothetical membrane protein, conserved, DUF20 family
           [Thermococcus kodakarensis KOD1]
          Length = 330

 Score = 40.0 bits (92), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 103/218 (47%), Gaps = 18/218 (8%)

Query: 153 ASRFGMIFLDYCLSI----IFMIIALFFFYR---DGFSISQQLDSLGEHLFPAYWKKISR 205
           + RF    L Y  S+    + +I+ +F FY    +  +I Q++ SL         +K+  
Sbjct: 118 SQRFNSYVLGYTYSLPTLLLQVIVTVFSFYGILVNADAIKQEVYSLIPPTNRDLARKLID 177

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLG---SAYWLAGVPSHVALGVITAIMAMIP--GGAPI 260
              + +     G  ++ +G+G+++      + ++ V   VA G++T ++ ++P  GG  +
Sbjct: 178 SGAETLHIVLRGWLLVGVGKGILMALFFRVFGISDVGGAVAAGILTVVIELLPVVGGWIV 237

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWG-AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
               V+ YL+ +G+I +   L + G ++   + D  LR  +      +  + +  G +GG
Sbjct: 238 WVGGVA-YLINQGHILSGVLLAVLGFSLVSPLPDILLRDKISRLKWGVNAIISLLGFIGG 296

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
               G +G+ IGPV + L+  + +E     KE KE+ S
Sbjct: 297 YIAFGFVGIIIGPVSLGLLKTLVEEW----KEIKERTS 330


>gi|67923851|ref|ZP_00517311.1| Protein of unknown function UPF0118 [Crocosphaera watsonii WH 8501]
 gi|67854314|gb|EAM49613.1| Protein of unknown function UPF0118 [Crocosphaera watsonii WH 8501]
          Length = 354

 Score = 40.0 bits (92), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 31/47 (65%)

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           +VD  L+P L+   + +P +    G++GG    G+LGLFIGPV+++L
Sbjct: 290 LVDNILKPILMSKGLPVPTIVILMGVLGGTLVHGILGLFIGPVILSL 336


>gi|325527775|gb|EGD05048.1| hypothetical protein B1M_08317 [Burkholderia sp. TJI49]
          Length = 36

 Score = 40.0 bits (92), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 24/31 (77%)

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           FG++GG  T GL+GLF+GP LM ++ ++W E
Sbjct: 3   FGILGGAETFGLIGLFVGPALMTVLTMLWTE 33


>gi|312870325|ref|ZP_07730452.1| putative membrane protein [Lactobacillus oris PB013-T2-3]
 gi|311094146|gb|EFQ52463.1| putative membrane protein [Lactobacillus oris PB013-T2-3]
          Length = 369

 Score = 40.0 bits (92), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 115/271 (42%), Gaps = 23/271 (8%)

Query: 87  LEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELW----TKHLSHPQSLKILSETFL 141
           L + EL+S V +L N H   + R+++         E++     +HLS  ++ K+LS  F 
Sbjct: 99  LVIPELISCVQLLINNHSKVITRFITAFEHNSNLQEVFKQFDVRHLSWSKAEKVLSYGFS 158

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            T  +  +   AS          +S+    I  FFF        + L      L  AY  
Sbjct: 159 GT--VKALMSTASS--------VVSVATTSIVAFFFSIYLLIYKEMLARQCTRLIDAYLG 208

Query: 202 KISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLA----GVPSHVALGVITAIMAMI 254
           KI R +  VIR+    +         +  +LG A ++      +P    +GV+TAI A+I
Sbjct: 209 KIKRPLMYVIRTFDNCYSNYIAGQCKDAAILGIACFIGMSILRMPYATMIGVVTAIGALI 268

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I   ++ + L+   +   A    ++  +   + ++   P +VG  I LP +  F 
Sbjct: 269 PIIGAILGASIGVVLIFAVSPLKAGIFLIFIIVLQQLDNRITYPLVVGKSIGLPSVWVFA 328

Query: 315 GLVGGVRTMGLLGLFIG-PVLMALIAVIWKE 344
            ++ G    G+LG+ +  P+  AL  +I  +
Sbjct: 329 AVIIGGSISGILGMMLTVPLFAALYQIIATD 359


>gi|297379768|gb|ADI34655.1| membrane protein [Helicobacter pylori v225d]
          Length = 349

 Score = 40.0 bits (92), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 74/166 (44%), Gaps = 13/166 (7%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLG-SAYWLAGVPSHVALGVITAIMAMIPG-GA 258
           KKI   V  ++R   L   I  I EG+  G    W        +LG++  + +++P  G 
Sbjct: 182 KKIFEEVAGILRIVLLTSLITVILEGVAFGLMIVWFG--HDGWSLGILYGLASLVPAVGG 239

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLV--------GGPIKLPF 309
            + +  ++IY L  G++  A  + L+  + +  ++D  ++P L+           +K+  
Sbjct: 240 ALIWIPIAIYELYHGHVNEAIFIALYSILLISVLIDSVIKPILIVFIKKRIFKTTLKINE 299

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 300 MLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345


>gi|290509932|ref|ZP_06549302.1| hypothetical protein HMPREF0485_01702 [Klebsiella sp. 1_1_55]
 gi|289776648|gb|EFD84646.1| hypothetical protein HMPREF0485_01702 [Klebsiella sp. 1_1_55]
          Length = 366

 Score = 40.0 bits (92), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 19/146 (13%)

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            ++R+    IR+   G+  +A+ + L++G    +A +P   A+G+   I+A+I G A + 
Sbjct: 210 TLTRLCTSTIRAVAQGVIGVALIQALLVGVIMLMASIP---AVGIFF-ILALILGIAQVP 265

Query: 262 F---TAVSIYLL-------IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
               TA +I L+          +IF    + + G     + D  L+P L+G  +  P   
Sbjct: 266 VILVTAPAIALMWSLGTHSTGMDIFYTILMIVAG-----MADNVLKPLLLGRGVDAPMPV 320

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMAL 337
              G +GG+ + G+LG+F+G  L+A+
Sbjct: 321 VLLGALGGMASNGILGMFLGATLLAI 346


>gi|146321353|ref|YP_001201064.1| permease [Streptococcus suis 98HAH33]
 gi|145692159|gb|ABP92664.1| Predicted permease [Streptococcus suis 98HAH33]
          Length = 391

 Score = 40.0 bits (92), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 104/233 (44%), Gaps = 27/233 (11%)

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC-----------LSIIFMIIALFFF 177
            P +L++L+    K N  D I  +A +F    +++            ++I+ M   LF+ 
Sbjct: 148 RPTALEMLN----KVN--DQIVAYAQKFSSSAVNWASNLISTASQIIVAILIMPFILFYL 201

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKK-ISRIVPKV---IRSTFLGMTIIAIGEGLVLGSAY 233
            RDG    Q L+       P  W++ I  ++  V   + +   G   +AI   L+    +
Sbjct: 202 LRDG----QYLNKHITQYLPTKWREPIGTVLSDVNGQLSNYVRGQVTVAIIVALMFSVMF 257

Query: 234 WLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            + G+   + LGV+   + +IP  G+ ++     I  LI G I     L ++  IE  I 
Sbjct: 258 SIIGLSYPITLGVMAGFLNLIPYLGSFLAMIPAVILGLIAGPIMLIKVLVVF-MIEQTIE 316

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            + + P ++G  + +  +   F L+   +  G+LG+F+G  + A I V+ K +
Sbjct: 317 GRFVTPLIIGSSLSIHPITILFVLLTAGQMYGVLGVFLGIPIYASIKVLVKAA 369


>gi|253572141|ref|ZP_04849545.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251838321|gb|EES66408.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 377

 Score = 39.7 bits (91), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 140/351 (39%), Gaps = 38/351 (10%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L G   P   A +I +  +P+   F  K    S  +++   + ++ L  V L +L    M
Sbjct: 31  LSGVLLPFFIAWLIAYMVYPLVKFFQYKLRLKSRIVSIFCALFLITLVGVSLFYLLVPPM 90

Query: 87  L----EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
           +     M +L+    L N  G  VP+ LS         E   +++      +ILSE  + 
Sbjct: 91  VSEIGRMNDLLVTY-LTNGAGNNVPKNLS---------EFIHENIDLQALNRILSEENIL 140

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE---HLFPAY 199
               D +PR  +      L   L+I+F I+A F        I    + + E   HL P  
Sbjct: 141 AAIKDTVPRVWA-----LLAESLNILFSILASFIILLYVIFILLDYEVIAEGWLHLLPNK 195

Query: 200 WKKI-SRIVPKV---IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           ++   S +V  V   +   F G  ++A   G++    + +   P  +ALG+    + M+P
Sbjct: 196 YRTFASNLVHDVQDGMNRYFRGQALVAFCVGILFSIGFLIIDFPMAIALGLFIGALNMVP 255

Query: 256 GGAPISFTAVSIYLLIKGN-------IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
               I F    +  ++K         I  A  L ++  +++ I D  L P ++G    L 
Sbjct: 256 YLQIIGFLPTVLLAILKAADTGENFWIIIACALAVFAIVQI-IQDTFLVPKIMGKITGLN 314

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                  L      MG+LG+ I   L  L+   ++  I+    NKE+I  +
Sbjct: 315 PAIILLSLSIWGSLMGMLGMIIALPLTTLMLSYYQRFII----NKERIKYD 361


>gi|307352761|ref|YP_003893812.1| hypothetical protein Mpet_0600 [Methanoplanus petrolearius DSM
           11571]
 gi|307155994|gb|ADN35374.1| protein of unknown function UPF0118 [Methanoplanus petrolearius DSM
           11571]
          Length = 346

 Score = 39.7 bits (91), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 31/51 (60%)

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           D  +RPFL+G   K+  +  F    GG+  MG++G  IGPV++AL+   ++
Sbjct: 277 DWWIRPFLMGKRTKISGVIMFIAFFGGIMAMGVVGFIIGPVIVALVIACYR 327


>gi|284037625|ref|YP_003387555.1| hypothetical protein Slin_2741 [Spirosoma linguale DSM 74]
 gi|283816918|gb|ADB38756.1| protein of unknown function UPF0118 [Spirosoma linguale DSM 74]
          Length = 355

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 60/308 (19%), Positives = 124/308 (40%), Gaps = 30/308 (9%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           +Y L G+ +  L A I+     P +++   K+  + + +  +  +  + + I+P L L  
Sbjct: 26  IYGLSGYISAFLGAGILYVVFRPWFTALAIKRHWNKSLVTTLLIIFSIVVIIMPFLTLSL 85

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                   L+ ++   +QH   +            A EL    ++  +++    +  L+ 
Sbjct: 86  L-------LIDRIQYYSQHTEDILNLAKK------AEELTGYQITSQENI----QNLLRQ 128

Query: 144 NGIDFIPRFASRFGMIFLDYC--LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP---A 198
            G  +  R         LD+   L ++F  +   F  ++GF    Q         P    
Sbjct: 129 GG-SYASRLLPSLAGGALDFIVILGLMFFTMYFMFVQQEGFQAGLQ------KYLPFKKD 181

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-G 257
             K++   +   + +  +G  ++++ +G++ G+  W+ GVP  +  G +   MA IP  G
Sbjct: 182 TQKELGESLKNNVNANVIGQALVSLVQGVLTGATLWIFGVPDALFWGTVAFFMAFIPVLG 241

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P+ +    +  L +GN      + + G + +  +D  LR  L      +  L T  G+V
Sbjct: 242 TPLVWGPAGLIQLSQGNTSQGIGILVVGVVVIINIDNLLRIMLAKRMGDIHPLVTLAGIV 301

Query: 318 GGVRTMGL 325
            GV   G+
Sbjct: 302 LGVPIFGI 309


>gi|159026346|emb|CAO86435.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 347

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 22/153 (14%)

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI 271
           ++FL  +++ I  GL+L      AG+     LGVI AI    PG GA +    V+I    
Sbjct: 210 TSFLSFSLLGIQYGLIL------AGI-----LGVIDAI----PGIGATLGILLVTILTFT 254

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
              +  A   F+   + + I D  +RP ++G  ++L  +  F  L  G R  GLLG+F+ 
Sbjct: 255 SQGLTIAVKAFIVCVVLVQIQDNIIRPKVMGNALELNPVILFLSLFIGERIAGLLGVFLS 314

Query: 332 PVLMALIAVIW-----KESIMAIKENKEKISSN 359
             +  +IA IW     ++ I  ++EN+ K S  
Sbjct: 315 IPIAGMIA-IWISYGEEKPITDLEENQLKESQE 346


>gi|256419838|ref|YP_003120491.1| hypothetical protein Cpin_0792 [Chitinophaga pinensis DSM 2588]
 gi|256034746|gb|ACU58290.1| protein of unknown function UPF0118 [Chitinophaga pinensis DSM
           2588]
          Length = 344

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 1/130 (0%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSI 267
           K++ +  +G+  IA+ +G+V    Y++  VP  V    +T   AM+P  GA   +  + +
Sbjct: 192 KLVIANAVGIPAIALIQGVVSLIGYFIFQVPQPVFWFAVTCFTAMLPVVGAAAVYVPMGL 251

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           YLL  G  +    + ++G   +   D   R  L      +  L T FG++ GV   G +G
Sbjct: 252 YLLGTGMTWQGIGVLVYGFAVVGTSDNIFRFVLAKRIGDVHPLITVFGVLIGVNLFGFIG 311

Query: 328 LFIGPVLMAL 337
           L  GP+L+++
Sbjct: 312 LIFGPLLISM 321


>gi|224370368|ref|YP_002604532.1| putative sodium:dicarboxylate symporter permease [Desulfobacterium
           autotrophicum HRM2]
 gi|223693085|gb|ACN16368.1| putative sodium:dicarboxylate symporter permease [Desulfobacterium
           autotrophicum HRM2]
          Length = 358

 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 1/97 (1%)

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFL 283
           +G + G A+ LAG+   V  G I A+ ++IP  G  + +    I L++ G       L +
Sbjct: 220 QGFICGLAFALAGIKGPVFWGSIMAVTSIIPAVGTALVWGPALIILVLMGKFTGVIILAV 279

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
              +    +D  LRP LVG   K+  L   FG +GG+
Sbjct: 280 LCGVVAGNLDNVLRPRLVGKDTKMHDLFVLFGTLGGI 316


>gi|229169133|ref|ZP_04296848.1| hypothetical protein bcere0007_40850 [Bacillus cereus AH621]
 gi|228614361|gb|EEK71471.1| hypothetical protein bcere0007_40850 [Bacillus cereus AH621]
          Length = 361

 Score = 39.7 bits (91), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 26/172 (15%)

Query: 188 LDSLGE--HLF----PAYWKKISRIVPKVIR----STFLGMTIIAIGEGLVLGSAYWLAG 237
           L   GE  H+F    P+ W+   +++ K I     S   G   + +  G V   ++W  G
Sbjct: 185 LKDYGEFYHIFWKLVPSKWRSTGQMLAKEIDKSLGSYIRGQLFVCLVLGGVSVLSFWFIG 244

Query: 238 VPSHVALGVITAIMAMIP------GGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIEL 289
           +   + LG+I  +  +IP      G  P    A  VS  LLIK  I  A   FL   I  
Sbjct: 245 MKYPLLLGIIIGVTDIIPYFGPILGAIPTLMIAATVSTSLLIKAGITIAILQFLESNI-- 302

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                 L P++VG  +++  +   F L+ G    G++GL I   ++A+I  +
Sbjct: 303 ------LSPYIVGKSLRMHPVIIMFALLVGGEVAGIVGLLISVPILAVIRTV 348


>gi|237752007|ref|ZP_04582487.1| membrane protein [Helicobacter winghamensis ATCC BAA-430]
 gi|229376574|gb|EEO26665.1| membrane protein [Helicobacter winghamensis ATCC BAA-430]
          Length = 355

 Score = 39.7 bits (91), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 13/169 (7%)

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
           P   K +   V  VI   F       I +G + G      G  S++ L V     +++P 
Sbjct: 189 PTQTKSLYNEVSAVISVVFYSSIFSMILQGTLFGILMLFFGYNSYL-LAVFYGFASLVPV 247

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPF--------LVGGPI 305
            GG+ +    V  Y L  GN  NA  + L+  I +  + D  ++PF        L+  P+
Sbjct: 248 VGGSLVWLPIVG-YELYLGNYTNAIVIALYSIIIIATLADNGIKPFIIAFINRVLIKTPV 306

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           ++  +  FF ++ G+ + G  G+ +GP + AL   + +     +  NK+
Sbjct: 307 QINEMLIFFAIIAGLTSFGFWGIVLGPAITALFIALLRIYQTLLNSNKD 355


>gi|289577289|ref|YP_003475916.1| sporulation integral membrane protein YtvI [Thermoanaerobacter
           italicus Ab9]
 gi|289527002|gb|ADD01354.1| sporulation integral membrane protein YtvI [Thermoanaerobacter
           italicus Ab9]
          Length = 354

 Score = 39.7 bits (91), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 109/250 (43%), Gaps = 35/250 (14%)

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI-------IFMI 171
              + T ++S P ++  L E+ + +  +++I  FA       L++   +       +  +
Sbjct: 115 VDRIRTYYISLPPNITSLIESNMHS-ILNYISLFAKNLATWLLNFATKLPNFFFMTLITL 173

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG----------MTII 221
           +A FF  +D   I   LD +   + P++W + ++ +   +  TF G          +T +
Sbjct: 174 VATFFISKDKNLI---LDFIKRQI-PSHWAQHAKNIQIDLLKTFFGYLRAVAAIMLITFL 229

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP----GGAPISFTAVSIYLLIKGNIFN 277
            +  GLV+       G      LG+   I+  +P    G   I +   +I ++IK  +  
Sbjct: 230 EVSIGLVI------IGFDYPFLLGLFVTIVDALPVLGSGSVMIPWALYNI-IIIKNYMVG 282

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
              L L+  I + +V + + P +VG  I L  L T   +  GV+  G LGL IGPV + +
Sbjct: 283 IYLLILY--ILVVVVRQMIEPKIVGQSIGLHPLVTLLSMFIGVKLFGALGLIIGPVFVVV 340

Query: 338 IAVIWKESIM 347
              + +  I+
Sbjct: 341 FKALQRAEII 350


>gi|229013608|ref|ZP_04170739.1| hypothetical protein bmyco0001_40160 [Bacillus mycoides DSM 2048]
 gi|229135213|ref|ZP_04264012.1| hypothetical protein bcere0014_41150 [Bacillus cereus BDRD-ST196]
 gi|228648255|gb|EEL04291.1| hypothetical protein bcere0014_41150 [Bacillus cereus BDRD-ST196]
 gi|228747667|gb|EEL97539.1| hypothetical protein bmyco0001_40160 [Bacillus mycoides DSM 2048]
          Length = 361

 Score = 39.7 bits (91), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 26/172 (15%)

Query: 188 LDSLGE--HLF----PAYWKKISRIVPKVIR----STFLGMTIIAIGEGLVLGSAYWLAG 237
           L   GE  H+F    P+ W+   +++ K I     S   G   + +  G V   ++W  G
Sbjct: 185 LKDYGEFYHIFWKLVPSKWRSTGQMLAKEIDKSLGSYIRGQLFVCLVLGGVSVLSFWFIG 244

Query: 238 VPSHVALGVITAIMAMIP------GGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIEL 289
           +   + LG+I  +  +IP      G  P    A  VS  LLIK  I  A   FL   I  
Sbjct: 245 MKYPLLLGIIIGVTDIIPYFGPILGAIPTLMIAATVSTSLLIKAGITIAILQFLESNI-- 302

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                 L P++VG  +++  +   F L+ G    G++GL I   ++A+I  +
Sbjct: 303 ------LSPYIVGKSLRMHPVIIMFALLVGGEVAGIVGLLISVPILAVIRTV 348


>gi|302389809|ref|YP_003825630.1| sporulation integral membrane protein YtvI [Thermosediminibacter
           oceani DSM 16646]
 gi|302200437|gb|ADL08007.1| sporulation integral membrane protein YtvI [Thermosediminibacter
           oceani DSM 16646]
          Length = 352

 Score = 39.7 bits (91), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 98/196 (50%), Gaps = 16/196 (8%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM-----TII 221
           +IF  ++ +FF +D   I   +  +  H F   +KK+  I  +++ S F+G+     T++
Sbjct: 165 LIFTFLSSYFFAKDKKRIMISIRKILPHNF---YKKLENIQLELLIS-FVGLIKAQITLV 220

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATC 280
            I   L+  + +++  V   + LG+I  ++ ++P  G  I F   +++  I GNI  A  
Sbjct: 221 MIST-LITIAGFYILKVDYALTLGIICGVLDVLPIFGPSIIFIPWAVFSAIVGNIKFAIA 279

Query: 281 LFLWGAIELFIV--DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           L    A+ L +V   + L+  ++G  + L  +     +  G++  G LGLFIGP+++ ++
Sbjct: 280 LI---ALYLVVVGCRQVLQAKVIGTHLGLDPIVALISIYVGIKIFGFLGLFIGPLVVVIV 336

Query: 339 AVIWKESIMAIKENKE 354
             + +  ++    N+ 
Sbjct: 337 RAVIQSGLIPPLVNRT 352


>gi|229019819|ref|ZP_04176621.1| Sporulation integral membrane protein YtvI [Bacillus cereus AH1273]
 gi|229026045|ref|ZP_04182428.1| Sporulation integral membrane protein YtvI [Bacillus cereus AH1272]
 gi|228735261|gb|EEL85873.1| Sporulation integral membrane protein YtvI [Bacillus cereus AH1272]
 gi|228741490|gb|EEL91688.1| Sporulation integral membrane protein YtvI [Bacillus cereus AH1273]
          Length = 365

 Score = 39.7 bits (91), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 22/191 (11%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI------RSTFLGMTI 220
           ++F+++A FF   D   ++ ++     +    Y K I   + K +      + T + MT 
Sbjct: 172 LVFILLATFFISYDWHHLAHKVRKFLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTT 231

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
           + +  GL++        VP  + + +IT ++ ++P  G    F    IY+   G+     
Sbjct: 232 VIVLIGLLI------LRVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGD----- 280

Query: 280 CLFLWGAIELFIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             F  G + L+IV     + + P ++   I L  L T   L  G +  G LGL IGPV +
Sbjct: 281 TAFAIGLLILYIVVIVQRQIMEPKVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVTL 340

Query: 336 ALIAVIWKESI 346
            L+  + K  +
Sbjct: 341 VLLNTLHKAHV 351


>gi|152976977|ref|YP_001376494.1| sporulation integral membrane protein YtvI [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025729|gb|ABS23499.1| Sporulation integral membrane protein YtvI [Bacillus cytotoxicus
           NVH 391-98]
          Length = 372

 Score = 39.7 bits (91), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 22/191 (11%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV------IRSTFLGMTI 220
           ++F+++A FF   D   ++ +      +    Y K I   + K        + T + MT 
Sbjct: 179 LVFILLATFFISFDWHRLAHKTRHFLPNRVHGYGKTIFVDLRKASFGFVKAQLTLVSMTT 238

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNAT 279
           I +  GL++        VP  + + +IT I+ ++P  G    F    IY+   G+     
Sbjct: 239 IIVLVGLLI------LRVPYAITIALITGIVDLLPYLGTGAVFVPWVIYVFFTGD----- 287

Query: 280 CLFLWGAIELFIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             F  G + L+I+     + + P ++   I L  LPT   L  G +  G LGL +GPV +
Sbjct: 288 TAFAIGLLILYIIVIVQRQIMEPKVLSSNIGLDPLPTLVALFVGFKLYGFLGLIVGPVTL 347

Query: 336 ALIAVIWKESI 346
            L+  + K  +
Sbjct: 348 VLLNTLHKAHV 358


>gi|300913741|ref|ZP_07131058.1| sporulation integral membrane protein YtvI [Thermoanaerobacter sp.
           X561]
 gi|300890426|gb|EFK85571.1| sporulation integral membrane protein YtvI [Thermoanaerobacter sp.
           X561]
          Length = 362

 Score = 39.7 bits (91), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 109/250 (43%), Gaps = 35/250 (14%)

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI-------IFMI 171
              + T ++S P ++  L E+ + +  +++I  FA       L++   +       +  +
Sbjct: 123 VDRIRTYYISLPPNITSLIESNMHS-ILNYISLFAKNLATWLLNFATKLPNFFFMTLITL 181

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG----------MTII 221
           +A FF  +D   I   LD +   + P++W + ++ +   +  TF G          +T +
Sbjct: 182 VATFFISKDKNLI---LDFIKRQI-PSHWAQHAKNIQIDLLKTFFGYLRAVAAIMLITFL 237

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP----GGAPISFTAVSIYLLIKGNIFN 277
            +  GLV+       G      LG+   I+  +P    G   I +   +I ++IK  +  
Sbjct: 238 EVSIGLVI------IGFDYPFLLGLFVTIVDALPVLGSGSVMIPWALYNI-IIIKNYMVG 290

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
              L L+  I + +V + + P +VG  I L  L T   +  GV+  G LGL IGPV + +
Sbjct: 291 IYLLILY--ILVVVVRQMIEPKIVGQSIGLHPLVTLLSMFIGVKLFGALGLIIGPVFVVV 348

Query: 338 IAVIWKESIM 347
              + +  I+
Sbjct: 349 FKALQRAEII 358


>gi|322386253|ref|ZP_08059885.1| permease [Streptococcus cristatus ATCC 51100]
 gi|321269715|gb|EFX52643.1| permease [Streptococcus cristatus ATCC 51100]
          Length = 364

 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 105/258 (40%), Gaps = 14/258 (5%)

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           V +WL    G + +S+L  K L+     K L  + +    I  +         IF ++  
Sbjct: 117 VAKWLQQ-SGLLSSSQL--KDLT-----KQLQNSDIVNRAISLLGSLTGNISAIFGNF-F 167

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF----LGMTII 221
           S+I  I  +F F      +      L + L P    K    V  VI  T+    +G  I 
Sbjct: 168 SVIMSIFLMFAFLSSKEHLQTITSRLLQVLLPEKAVKRLSYVGSVIVETYDKFLMGQMIE 227

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL 281
           A+  G+++  AY L G+P     GV+  +++ IP   P S  A+    +   + + A   
Sbjct: 228 AVIVGVLVFIAYSLTGLPYAALTGVLAGVLSFIPYIGPFSACALGAIFIFTDSPWKALLS 287

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                +   I    + P +VG  + LP L T    + G    GL+G+     + A+I  +
Sbjct: 288 IAVFQLVQLIEGNIIYPRVVGQSVGLPTLFTLAAALIGGNLFGLVGMIFFTPIFAVIYRL 347

Query: 342 WKESIMAIKENKEKISSN 359
            +E ++  KE  E  +S 
Sbjct: 348 VREFVVE-KEEAEGDTSR 364


>gi|300361263|ref|ZP_07057440.1| permease [Lactobacillus gasseri JV-V03]
 gi|300353882|gb|EFJ69753.1| permease [Lactobacillus gasseri JV-V03]
          Length = 393

 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 84/185 (45%), Gaps = 9/185 (4%)

Query: 164 CLSIIFMII-----ALFFFYRDGFSISQQLDSLG-EHLFPAYWKKISRIVPKVIRSTFLG 217
            +++IFM++      LFF  +DG  ++  +     + L P++   +S I    + S   G
Sbjct: 181 VITMIFMMLLTAPFVLFFMLKDGHRLNPYVTKFAPQKLQPSFSSLLSDI-NGAVASYIRG 239

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIF 276
              +A   G++    Y + G+   + L V+  ++ MIP  G  I+F    I  LI   + 
Sbjct: 240 QITVAFWVGVMFAIGYSVIGLNYGITLAVLAGVLNMIPYFGTFIAFIPAIILGLISSPMM 299

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
               L ++ AIE  +  + + P ++G  + +  + T   L+G     GL G+     + A
Sbjct: 300 LVKVLIVF-AIEQTLEGRVISPLVMGNKMNMNPVTTILLLIGASAVAGLWGVIFAIPVYA 358

Query: 337 LIAVI 341
           +I +I
Sbjct: 359 VIKII 363


>gi|209551614|ref|YP_002283531.1| hypothetical protein Rleg2_4043 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537370|gb|ACI57305.1| protein of unknown function UPF0118 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 385

 Score = 39.3 bits (90), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE-- 344
           + + ++D  L+P L+   +  P      G++GG  + GLLGLF+GPV++++   + K   
Sbjct: 299 VPIMLIDNILKPVLMARGLSTPMPVILIGVIGGTLSHGLLGLFLGPVVLSVFYELLKAWA 358

Query: 345 --SIMAIKENK 353
             S+    EN 
Sbjct: 359 WPSVQTASENS 369


>gi|298388101|ref|ZP_06997646.1| membrane protein [Bacteroides sp. 1_1_14]
 gi|298259131|gb|EFI02010.1| membrane protein [Bacteroides sp. 1_1_14]
          Length = 377

 Score = 39.3 bits (90), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 80/351 (22%), Positives = 140/351 (39%), Gaps = 38/351 (10%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L G   P   A +I +  +P+   F  K    S  +++   + ++ L  + L +L    M
Sbjct: 31  LSGVLLPFFIAWLIAYMVYPLVKFFQYKLRLKSRIVSIFCALFLITLVGISLFYLLVPPM 90

Query: 87  L----EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
           +     M +L+    L N  G  VP+ LS         E   +++      +ILSE  + 
Sbjct: 91  VSEIGRMNDLLV-TYLTNGAGNNVPKNLS---------EFIHENIDLQALNRILSEENIL 140

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE---HLFPAY 199
               D +PR  +      L   L+I+F I+A F        I    + + E   HL P  
Sbjct: 141 AAIKDTVPRVWA-----LLAESLNILFSILASFIILLYVIFILLDYEVIAEGWLHLLPNK 195

Query: 200 WKKI-SRIVPKV---IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           ++   S +V  V   +   F G  ++A   G++    + +   P  +ALG+    + M+P
Sbjct: 196 YRTFASNLVHDVQDGMNRYFRGQALVAFCVGILFSIGFLIIDFPMAIALGLFIGALNMVP 255

Query: 256 GGAPISFTAVSIYLLIKGN-------IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
               I F    +  ++K         I  A  L ++  +++ I D  L P ++G    L 
Sbjct: 256 YLQIIGFLPTVLLAILKAADTGENFWIIIACALAVFAIVQI-IQDTFLVPKIMGKITGLN 314

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                  L      MG+LG+ I   L  L+   ++  I+    NKE+I  +
Sbjct: 315 PAIILLSLSIWGSLMGMLGMIIALPLTTLMLSYYQRFII----NKERIKYD 361


>gi|300914210|ref|ZP_07131526.1| protein of unknown function UPF0118 [Thermoanaerobacter sp. X561]
 gi|300889145|gb|EFK84291.1| protein of unknown function UPF0118 [Thermoanaerobacter sp. X561]
          Length = 358

 Score = 39.3 bits (90), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 135/335 (40%), Gaps = 44/335 (13%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESS-----TFLAVIATVSVMCLFIVPLLFL 81
           +K   +P   + +I +   P+   F SK    S      FL V + +     +IVPLL  
Sbjct: 46  IKNILSPFFVSALIAYLLNPMVKFFNSKGFSISLSILLVFLIVASGILFFSFYIVPLLIN 105

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH--PQSLKILSET 139
            +  +L+M                +P +  +I   +   +L   +LS+  PQ  K+L + 
Sbjct: 106 EFIALLQM----------------IPFYAEEIQKLLI--QLKFNYLSYLPPQVEKVLDKN 147

Query: 140 FLKTNGIDFIPRFASRFGMI--FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
               N   F     S F  +   L   + II + I  F+F +D     ++++ +    + 
Sbjct: 148 LGSLNN-AFTYHIDSAFKSVITILKDAVDIIIIPIVTFYFLKDKKVFKEEIERILPQKYS 206

Query: 198 AYW----KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
             +    KKI +I+ K +R+     T +AI   + L     L  V     +GV+  I+ +
Sbjct: 207 TKFFNILKKIDKILSKYLRAQIYISTFVAIFTMIGLS----LIKVKYAFLIGVLAGILNI 262

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT----LRPFLVGGPIKLPF 309
           IP   PI    +SI   +   + ++     W  I   +V +     + P ++   + L  
Sbjct: 263 IPYVGPI----LSIIPTVLIGLLDSLTKGFWALIICLLVQQVENAFITPKIMSDSVGLHP 318

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           +   F L+ G    G+ GL +   ++A+I  I  E
Sbjct: 319 VTVIFSLIAGGELFGIWGLLLSVPIVAMIKAIVIE 353


>gi|329769779|ref|ZP_08261180.1| hypothetical protein HMPREF0433_00944 [Gemella sanguinis M325]
 gi|328838141|gb|EGF87759.1| hypothetical protein HMPREF0433_00944 [Gemella sanguinis M325]
          Length = 386

 Score = 39.3 bits (90), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 88/190 (46%), Gaps = 16/190 (8%)

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKK-----ISRIVPKVIRSTFLGMTIIAIGEGLV 228
           LFF  +D  +  + L SL     P   KK     I  I  KV  S   G  ++++  G++
Sbjct: 202 LFFLLKDASNFKEYLVSL----LPKKLKKPVVDTIDEIDNKV-GSYIQGQMLVSLCIGVM 256

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGN---IFNATCLFLWG 285
           L   Y + G+    +L  I A ++++P   PI   A++  +L+  +   I     L +WG
Sbjct: 257 LYIGYTIIGLHYGFSLATIAAFLSIVPYIGPI--IAITPAMLVAASTSWIMVVKMLVVWG 314

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            ++ F+    + P ++G  + +  L   F ++ GV   G++G  +G  + +++ V+  + 
Sbjct: 315 IVQ-FLEANIISPNIMGKSMDMHPLTVIFVILIGVNLAGVVGAILGIPVYSMLKVLGSKI 373

Query: 346 IMAIKENKEK 355
             AI E   K
Sbjct: 374 QEAITERYNK 383


>gi|295399501|ref|ZP_06809483.1| sporulation integral membrane protein YtvI [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978967|gb|EFG54563.1| sporulation integral membrane protein YtvI [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 372

 Score = 39.3 bits (90), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 84/361 (23%), Positives = 156/361 (43%), Gaps = 38/361 (10%)

Query: 12  MRWMIMFIILV----SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +R++++  I+V    +LY++     P + A  I F   P+   F+  K +   +LAV+ T
Sbjct: 10  LRFLLVIAIVVLGAIALYYVSTVIYPFIIAFFIAFFINPLVD-FLETKAKMPRWLAVVVT 68

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-------------QHGIPVPRWLSDIP 114
           + V+   +  L+ L    ++   + ++ VV  N             Q  IP+   L+ + 
Sbjct: 69  LIVLFALVAGLVTLLIAEIVSGTQYLANVVPENFQKLVKYIETFFAQQIIPLYHDLAALF 128

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL---DYCLSIIFMI 171
             + AS+  T  +++ Q++     T + T    F  R       +     +     IF +
Sbjct: 129 KNLDASQQDTI-MNNIQAVG----TQIATTVGQFTQRVLQNIPQLLTWLPNAATVFIFSL 183

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM-----TIIAIGEG 226
           +A FF  +D +    +L  + + + PA   K  + V   ++    G      T+I+I   
Sbjct: 184 LATFFISKDWY----RLTGMVQKILPAKAHKSGKRVFLDLKKALFGFIKAQATLISITTV 239

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           +VL     L GV   + + +I  ++ ++P  G  I F    IY  I GNI  A  L +  
Sbjct: 240 IVLIGLLIL-GVDYAITIALIIGLVDILPYLGTGIVFVPWIIYAAISGNIPFAIGLGVLY 298

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            I L +  + + P ++   I L  L T   L  G + +G LGL +GPV + +I  +   +
Sbjct: 299 IIVL-VQRQIMEPKVLSSSIGLDPLATLVALFVGFKLIGFLGLIVGPVTLVIIRTLHSAN 357

Query: 346 I 346
           +
Sbjct: 358 V 358


>gi|326423645|ref|NP_759024.2| putative permease [Vibrio vulnificus CMCP6]
 gi|319998997|gb|AAO08551.2| Predicted permease [Vibrio vulnificus CMCP6]
          Length = 360

 Score = 39.3 bits (90), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 4/137 (2%)

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI--PGGAP 259
            + ++    +R   +G+  IA    ++ G+   LAGVP+     +I  + A++  P    
Sbjct: 209 SLHKLTTATLRQVAVGIIGIAFLTAMIFGAIVGLAGVPAASLFTLIALVFAIVQLPVTVV 268

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                  ++    G   NA    L   I    +D  L+P ++G  + +P      G VGG
Sbjct: 269 ALVAVAVLWSGDSGTAHNAIFTVL--IIAASFIDNFLKPIILGRGLDVPMPIILIGAVGG 326

Query: 320 VRTMGLLGLFIGPVLMA 336
           V + G+LG+F+G    A
Sbjct: 327 VMSGGILGMFVGAAFFA 343


>gi|193782592|ref|NP_435597.2| hypothetical protein SMa0665 [Sinorhizobium meliloti 1021]
 gi|193073048|gb|AAK65009.2| conserved hypothetical protein [Sinorhizobium meliloti 1021]
          Length = 384

 Score = 39.3 bits (90), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 5/84 (5%)

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
           F    LF    I L I+D  ++P LV   +  P L    G++GG  + GL+GLF+GP+++
Sbjct: 290 FGMAALFTILLIPLLIIDNVMKPILVARGLSTPTLVILLGVLGGTLSYGLIGLFLGPIVL 349

Query: 336 ALIAVIWKESIMAIKENKEKISSN 359
           ++       S++ I  N + + S 
Sbjct: 350 SVF-----HSLLLIWMNTDTVGSE 368


>gi|158336770|ref|YP_001517944.1| hypothetical protein AM1_3638 [Acaryochloris marina MBIC11017]
 gi|158307011|gb|ABW28628.1| conserved membrane protein [Acaryochloris marina MBIC11017]
          Length = 351

 Score = 39.3 bits (90), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 35/181 (19%)

Query: 200 WKKISRIVPKVIRSTFL------------GMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           WK + R +PK  R+ F             G  ++A+   +     +    VP  + L V+
Sbjct: 182 WKWLLRGLPKASRTRFTLAMKRNFLGFFWGRFLLALFFAVSSFFVFLSLSVPVPLILAVV 241

Query: 248 TAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--------DKTLRP 298
             I  MIPG GA I    +S+ LL +G         LW A+++ I         +  L P
Sbjct: 242 AGIFDMIPGIGATIGIGLISLILLPQG---------LWRAMQVLIACIVLQQIEENILMP 292

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKEKIS 357
            ++   +++  +  FF L+ G R  GL+GLF+  P+   L++++  ++    +E+  + S
Sbjct: 293 RVMQNSLQMNPVVLFFALLIGSRLAGLVGLFLSIPIAGVLLSLMDNDT----EEDDNEFS 348

Query: 358 S 358
            
Sbjct: 349 K 349


>gi|268319844|ref|YP_003293500.1| hypothetical protein FI9785_1373 [Lactobacillus johnsonii FI9785]
 gi|262398219|emb|CAX67233.1| conserved hypothetical protein [Lactobacillus johnsonii FI9785]
          Length = 388

 Score = 39.3 bits (90), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 84/185 (45%), Gaps = 9/185 (4%)

Query: 164 CLSIIFMII-----ALFFFYRDGFSISQQLDSLG-EHLFPAYWKKISRIVPKVIRSTFLG 217
            +++IFM +      LFF  +DG  ++  +  +  + L P++   +S I    + S   G
Sbjct: 181 VITMIFMTLLTAPFVLFFMLKDGHRLNPYVTKIAPKKLQPSFSSLLSDI-NGAVASYIRG 239

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIF 276
              +A   G++    Y + G+   + L V+  I+ MIP  G  I+F    I  LI   + 
Sbjct: 240 QITVAFWVGVIFAIGYSVIGLNYGITLAVLAGILNMIPYFGTFIAFIPAIILGLISSPMM 299

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
               L ++ AIE  +  + + P ++G  + +  + T   L+G     GL G+     + A
Sbjct: 300 LIKVLIVF-AIEQTLEGRVISPLVMGNKMNMNPVTTILLLIGASAVAGLWGVIFAIPVYA 358

Query: 337 LIAVI 341
           +I +I
Sbjct: 359 VIKII 363


>gi|217964433|ref|YP_002350111.1| conserved integral membrane protein [Listeria monocytogenes HCC23]
 gi|217333703|gb|ACK39497.1| conserved integral membrane protein [Listeria monocytogenes HCC23]
 gi|307571002|emb|CAR84181.1| membrane protein, putative [Listeria monocytogenes L99]
          Length = 345

 Score = 39.3 bits (90), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 14/155 (9%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
           KVI + F    IIA+   ++   A W+ G P  + L ++  ++ +IP  G  IS   ++I
Sbjct: 197 KVIEAQF----IIALVNAILTTIALWILGFPQLMTLSIMVFLLGLIPVAGVIISLVPLTI 252

Query: 268 YLLIKGNI----FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
                G +    +    + +  A+E ++    L P L+     LP   TF  L+ G    
Sbjct: 253 IGYSIGGVEYIFYILVVVIIIHALESYV----LNPKLMSAKTNLPVFYTFIILIFGEHFF 308

Query: 324 GLLGLFIG-PVLMALIAVIWKESIMAIKENKEKIS 357
           G+ GL +G PV+M  + V+   +   I++ K+ IS
Sbjct: 309 GIWGLIVGIPVVMFFLDVLGVTNQEEIEQPKDTIS 343


>gi|241710578|ref|XP_002412051.1| transmembrane protein, putative [Ixodes scapularis]
 gi|215505112|gb|EEC14606.1| transmembrane protein, putative [Ixodes scapularis]
          Length = 968

 Score = 39.3 bits (90), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 75/190 (39%), Gaps = 14/190 (7%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
           G   L++ L+ +  + ALF+  R      + LD L   + P    ++   V + +   F 
Sbjct: 697 GTAVLNFVLNFVVFLTALFYLLRASGERYKPLD-LFASMLPGSASRLGEAVEEAVAGVFA 755

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP------ISFTAVSIYLL 270
               +A   GL      WL      V +  I   +A + G  P          AV    L
Sbjct: 756 ASFKMAAFYGLYT----WLIHTLFEVKMVYIPTALASLFGAVPFIGAYWACLPAVLELWL 811

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           ++G +  A C+ L        VD  +   + GG    PFL T   + GGV  +G  G   
Sbjct: 812 VQGQVVKALCMLLCQLAPTSFVDCAIYSEIKGG--GHPFL-TGLAIAGGVFCLGFQGALF 868

Query: 331 GPVLMALIAV 340
           GP+L+ ++ V
Sbjct: 869 GPMLLCVLIV 878


>gi|46907647|ref|YP_014036.1| hypothetical protein LMOf2365_1438 [Listeria monocytogenes str. 4b
           F2365]
 gi|226224020|ref|YP_002758127.1| hypothetical protein Lm4b_01428 [Listeria monocytogenes Clip81459]
 gi|254824521|ref|ZP_05229522.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|254829822|ref|ZP_05234477.1| hypothetical protein Lmon1_00635 [Listeria monocytogenes 10403S]
 gi|254852537|ref|ZP_05241885.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|254932604|ref|ZP_05265963.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|255521340|ref|ZP_05388577.1| hypothetical protein LmonocFSL_08960 [Listeria monocytogenes FSL
           J1-175]
 gi|300765772|ref|ZP_07075748.1| hypothetical protein LMHG_11889 [Listeria monocytogenes FSL N1-017]
 gi|46880915|gb|AAT04213.1| putative membrane protein [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|225876482|emb|CAS05191.1| unnamed protein product [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|258605846|gb|EEW18454.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|293584163|gb|EFF96195.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|293593760|gb|EFG01521.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|300513547|gb|EFK40618.1| hypothetical protein LMHG_11889 [Listeria monocytogenes FSL N1-017]
 gi|328465467|gb|EGF36696.1| hypothetical protein LM1816_05950 [Listeria monocytogenes 1816]
 gi|328475017|gb|EGF45809.1| hypothetical protein LM220_07922 [Listeria monocytogenes 220]
          Length = 345

 Score = 39.3 bits (90), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 14/155 (9%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
           KVI + F    IIA+   ++   A W+ G P  + L ++  ++ +IP  G  IS   ++I
Sbjct: 197 KVIEAQF----IIALVNAILTTIALWILGFPQLMTLSIMVFLLGLIPVAGVIISLVPLTI 252

Query: 268 YLLIKGNI----FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
                G +    +    + +  A+E ++    L P L+     LP   TF  L+ G    
Sbjct: 253 IGYSIGGVEYIFYILVVVIIIHALESYV----LNPKLMSAKTNLPVFYTFIILIFGEHFF 308

Query: 324 GLLGLFIG-PVLMALIAVIWKESIMAIKENKEKIS 357
           G+ GL +G PV+M  + V+   +   I++ K+ IS
Sbjct: 309 GIWGLIVGIPVVMFFLDVLGVTNQEEIEQPKDTIS 343


>gi|110637635|ref|YP_677842.1| permease [Cytophaga hutchinsonii ATCC 33406]
 gi|110280316|gb|ABG58502.1| conserved hypothetical protein; possible permease [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 366

 Score = 39.3 bits (90), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 73/348 (20%), Positives = 158/348 (45%), Gaps = 46/348 (13%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F + +L  +I+   + PI +   ++   S  + AV+ T   + +FIVP   L +  + E 
Sbjct: 39  FVSILLGGIILAVAASPILTLLRNRFNLSDKWGAVLITCVALIVFIVPSYLLIHSLIREF 98

Query: 90  KELVSKV-------VLANQHGIPVPR-----WLSDIPGGMWASELWTKHLSHPQSLKILS 137
              +S         ++ N  G+P+ +     +L ++     +S ++ +H +  +++ I  
Sbjct: 99  THFISPENRAAVTGMIENLRGLPLIQDTLYEFLKNLTNN--SSVVFKEHATQIEAVGIGV 156

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF- 196
             F+   G+  +   AS               +IIA  F        ++Q   L E +F 
Sbjct: 157 LGFIGGLGLGLVHFLAS---------------VIIAGLFLAH-----AKQSAGLAEKIFI 196

Query: 197 ---PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  ++ S I  + I++   G+  +A  E ++    +++AGVP      V+  ++++
Sbjct: 197 RIAGKNGEEFSHITERTIQNVTKGIIGVAFLESVLAAFGFFVAGVPLAGVWTVVCLLLSI 256

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV--GGPIKLPFLP 311
           +  G       + IY+   G+   A+ L  W  + ++I +  ++P L+  G P+ +P + 
Sbjct: 257 VQLGIVPLAVPIVIYMFYTGSPVTASLLAAW-MVLIYIFEHLMKPILLSKGAPVPMPII- 314

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            F G+VGG    G +G+F+G VL    ++ +K  ++ ++ + +K++ N
Sbjct: 315 -FIGVVGGFIAGGFIGMFLGAVLF---SIAYKLFLVWLENDVQKVAHN 358


>gi|163942140|ref|YP_001647024.1| hypothetical protein BcerKBAB4_4237 [Bacillus weihenstephanensis
           KBAB4]
 gi|163864337|gb|ABY45396.1| protein of unknown function UPF0118 [Bacillus weihenstephanensis
           KBAB4]
          Length = 355

 Score = 39.3 bits (90), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 26/172 (15%)

Query: 188 LDSLGE--HLF----PAYWKKISRIVPKVIR----STFLGMTIIAIGEGLVLGSAYWLAG 237
           L   GE  H+F    P+ W+   +++ K I     S   G   + +  G V   ++W  G
Sbjct: 179 LKDYGEFYHIFWKLVPSKWRSTGQMLAKEIDKSLGSYIRGQLFVCLVLGGVSVLSFWFIG 238

Query: 238 VPSHVALGVITAIMAMIP------GGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIEL 289
           +   + LG+I  +  +IP      G  P    A  VS  LLIK  I  A   FL   I  
Sbjct: 239 MKYPLLLGIIIGVTDIIPYFGPILGAIPTLMIAATVSTSLLIKAGITIAILQFLESNI-- 296

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                 L P++VG  +++  +   F L+ G    G++GL I   ++A+I  +
Sbjct: 297 ------LSPYIVGKSLRMHPVIIMFALLVGGEVAGIVGLLISVPILAVIRTV 342


>gi|16803459|ref|NP_464944.1| hypothetical protein lmo1419 [Listeria monocytogenes EGD-e]
 gi|47095370|ref|ZP_00232980.1| membrane protein, putative [Listeria monocytogenes str. 1/2a F6854]
 gi|224499726|ref|ZP_03668075.1| hypothetical protein LmonF1_08559 [Listeria monocytogenes Finland
           1988]
 gi|224501639|ref|ZP_03669946.1| hypothetical protein LmonFR_03832 [Listeria monocytogenes FSL
           R2-561]
 gi|254827707|ref|ZP_05232394.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|254898415|ref|ZP_05258339.1| hypothetical protein LmonJ_01330 [Listeria monocytogenes J0161]
 gi|254912094|ref|ZP_05262106.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254936421|ref|ZP_05268118.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|284801805|ref|YP_003413670.1| hypothetical protein LM5578_1560 [Listeria monocytogenes 08-5578]
 gi|284994947|ref|YP_003416715.1| hypothetical protein LM5923_1512 [Listeria monocytogenes 08-5923]
 gi|16410848|emb|CAC99497.1| lmo1419 [Listeria monocytogenes EGD-e]
 gi|47016191|gb|EAL07114.1| membrane protein, putative [Listeria monocytogenes str. 1/2a F6854]
 gi|258600086|gb|EEW13411.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|258609013|gb|EEW21621.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|284057367|gb|ADB68308.1| hypothetical protein LM5578_1560 [Listeria monocytogenes 08-5578]
 gi|284060414|gb|ADB71353.1| hypothetical protein LM5923_1512 [Listeria monocytogenes 08-5923]
 gi|293590062|gb|EFF98396.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 345

 Score = 39.3 bits (90), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 14/155 (9%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
           KVI + F    IIA+   ++   A W+ G P  + L ++  ++ +IP  G  IS   ++I
Sbjct: 197 KVIEAQF----IIALVNAILTTIALWILGFPQLMTLSIMVFLLGLIPVAGVIISLVPLTI 252

Query: 268 YLLIKGNI----FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
                G +    +    + +  A+E ++    L P L+     LP   TF  L+ G    
Sbjct: 253 IGYSIGGVEYIFYILVVVIIIHALESYV----LNPKLMSAKTNLPVFYTFIILIFGEHFF 308

Query: 324 GLLGLFIG-PVLMALIAVIWKESIMAIKENKEKIS 357
           G+ GL +G PV+M  + V+   +   I++ K+ IS
Sbjct: 309 GIWGLIVGIPVVMFFLDVLGVTNQEEIEQPKDTIS 343


>gi|222153253|ref|YP_002562430.1| membrane protein [Streptococcus uberis 0140J]
 gi|222114066|emb|CAR42470.1| putative membrane protein [Streptococcus uberis 0140J]
          Length = 393

 Score = 39.3 bits (90), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 102/241 (42%), Gaps = 18/241 (7%)

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
           +WL +     + +EL     +  Q     +E+F K N I++   FAS    I     +SI
Sbjct: 140 KWLVN-----YKAELQDMLTNISQKALDYAESFSK-NAINWAGNFASAIARI----TVSI 189

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIG 224
           I     LF+F RD    S   D L   L       ISR+   + + +     G   +AI 
Sbjct: 190 IISPFILFYFLRDS---SMMKDGLVNVLPTKVRIPISRVLGDINQQLSGYVQGQVTVAII 246

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFL 283
            G + G  + + G+   +   +    + M+P  G+ ++   V I  +++G I     L +
Sbjct: 247 VGFMFGIMFSIVGLKYSITFSIAAGFLNMVPYLGSFLAMIPVVIMAMVQGPIMLIKVLII 306

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +  IE  I  + + P ++G  + +  +   F L+      G+ G+F+     A + VI K
Sbjct: 307 F-TIEQTIEGRFVTPLVLGNKLSIHPITIMFLLLTAGAMFGVWGVFLVIPFYASVKVIVK 365

Query: 344 E 344
           E
Sbjct: 366 E 366


>gi|255027621|ref|ZP_05299607.1| hypothetical protein LmonocytFSL_16972 [Listeria monocytogenes FSL
           J2-003]
          Length = 345

 Score = 39.3 bits (90), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 14/155 (9%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
           KVI + F    IIA+   ++   A W+ G P  + L ++  ++ +IP  G  IS   ++I
Sbjct: 197 KVIEAQF----IIALVNAILTTIALWILGFPQLMTLSIMVFLLGLIPVAGVIISLVPLTI 252

Query: 268 YLLIKGNI----FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
                G +    +    + +  A+E ++    L P L+     LP   TF  L+ G    
Sbjct: 253 IGYSIGGVEYIFYILVVVIIIHALESYV----LNPKLMSAKTNLPVFYTFIILIFGEHFF 308

Query: 324 GLLGLFIG-PVLMALIAVIWKESIMAIKENKEKIS 357
           G+ GL +G PV+M  + V+   +   I++ K+ IS
Sbjct: 309 GIWGLIVGIPVVMFFLDVLGVTNQEEIEQPKDTIS 343


>gi|227889594|ref|ZP_04007399.1| permease [Lactobacillus johnsonii ATCC 33200]
 gi|227849842|gb|EEJ59928.1| permease [Lactobacillus johnsonii ATCC 33200]
          Length = 393

 Score = 39.3 bits (90), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 84/185 (45%), Gaps = 9/185 (4%)

Query: 164 CLSIIFMII-----ALFFFYRDGFSISQQLDSLG-EHLFPAYWKKISRIVPKVIRSTFLG 217
            +++IFM +      LFF  +DG  ++  +  +  + L P++   +S I    + S   G
Sbjct: 181 VITMIFMTLLTAPFVLFFMLKDGHRLNPYVTKIAPKKLQPSFSSLLSDI-NGAVASYIRG 239

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIF 276
              +A   G++    Y + G+   + L V+  I+ MIP  G  I+F    I  LI   + 
Sbjct: 240 QITVAFWVGVIFAIGYSVIGLNYGITLAVLAGILNMIPYFGTFIAFIPAIILGLISSPMM 299

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
               L ++ AIE  +  + + P ++G  + +  + T   L+G     GL G+     + A
Sbjct: 300 LIKVLIVF-AIEQTLEGRVISPLVMGNKMNMNPVTTILLLIGASAVAGLWGVIFAIPVYA 358

Query: 337 LIAVI 341
           +I +I
Sbjct: 359 VIKII 363


>gi|167038699|ref|YP_001661684.1| hypothetical protein Teth514_0024 [Thermoanaerobacter sp. X514]
 gi|307723242|ref|YP_003902993.1| sporulation integral membrane protein YtvI [Thermoanaerobacter sp.
           X513]
 gi|166852939|gb|ABY91348.1| protein of unknown function UPF0118 [Thermoanaerobacter sp. X514]
 gi|307580303|gb|ADN53702.1| sporulation integral membrane protein YtvI [Thermoanaerobacter sp.
           X513]
          Length = 355

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 109/250 (43%), Gaps = 35/250 (14%)

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI-------IFMI 171
              + T ++S P ++  L E+ + +  +++I  FA       L++   +       +  +
Sbjct: 116 VDRIRTYYISLPPNITSLIESNMHS-ILNYISLFAKNLATWLLNFATKLPNFFFMTLITL 174

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG----------MTII 221
           +A FF  +D   I   LD +   + P++W + ++ +   +  TF G          +T +
Sbjct: 175 VATFFISKDKNLI---LDFIKRQI-PSHWAQHAKNIQIDLLKTFFGYLRAVAAIMLITFL 230

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP----GGAPISFTAVSIYLLIKGNIFN 277
            +  GLV+       G      LG+   I+  +P    G   I +   +I ++IK  +  
Sbjct: 231 EVSIGLVI------IGFDYPFLLGLFVTIVDALPVLGSGSVMIPWALYNI-IIIKNYMVG 283

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
              L L+  I + +V + + P +VG  I L  L T   +  GV+  G LGL IGPV + +
Sbjct: 284 IYLLILY--ILVVVVRQMIEPKIVGQSIGLHPLVTLLSMFIGVKLFGALGLIIGPVFVVV 341

Query: 338 IAVIWKESIM 347
              + +  I+
Sbjct: 342 FKALQRAEII 351


>gi|87301132|ref|ZP_01083973.1| hypothetical protein WH5701_14641 [Synechococcus sp. WH 5701]
 gi|87284100|gb|EAQ76053.1| hypothetical protein WH5701_14641 [Synechococcus sp. WH 5701]
          Length = 347

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 87/195 (44%), Gaps = 13/195 (6%)

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
           F + FG +FL        ++I ++    +G + SQ L  L E +   + + + + V   +
Sbjct: 147 FTNVFGGVFL--------LVIVVYMLVDNGATWSQALRLLPEDVRGRFDRSVQKNVLGFL 198

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLL 270
           R     M  +++   LV    + L GV   + L ++  ++  IPG GA +     S  + 
Sbjct: 199 RGQITLMIFLSLASFLV----FALLGVKFSLVLAIVVGVLDAIPGIGATLGVIVASGLVF 254

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +    + A  + +   +   I D  + P ++G  +++  +  FF L  G R  GLLG+F+
Sbjct: 255 LTQGQWLALQVVIASVVLQQIQDNLIHPRVMGRALEIRPVVLFFALFVGERLAGLLGVFL 314

Query: 331 GPVLMALIAVIWKES 345
              +  +I    KES
Sbjct: 315 AIPVTGMILGWGKES 329


>gi|238788116|ref|ZP_04631911.1| permease perM [Yersinia frederiksenii ATCC 33641]
 gi|238723703|gb|EEQ15348.1| permease perM [Yersinia frederiksenii ATCC 33641]
          Length = 354

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 122/271 (45%), Gaps = 44/271 (16%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGF-TSWP---IYSSFISKKEE 57
           R    +PQ I   +I+ +    LYF  G  AP+L+A+++ +   WP   +     S+   
Sbjct: 10  RRRFADPQVIALLVILLVGFCILYFFSGILAPLLAAIVLAYLLEWPTARLQRVGCSRPWA 69

Query: 58  SSTFLAVIATVSVMCLFIV-PLLFLFYYGML-EMKELVSKVVLANQHGIPVP-RWLSDIP 114
           +S  L V A++ ++ +F+V P ++     ++ +M ++++K    N     +P R+ + + 
Sbjct: 70  ASIVLVVFASIMLLAVFVVAPTVWQQGNNLISDMPKMLNKF---NAFAQTLPARYPALVD 126

Query: 115 GG---MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
            G   M A  L +K       L  + E+ +K +        AS  G++ L   + +I + 
Sbjct: 127 AGIVDMMAENLRSK-------LSGMGESVVKIS-------LASLIGLLTL--AIYLILVP 170

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFP-------AYWKKISRIVPKVIRSTFLGMTIIAIG 224
           + LFF  +D     +Q+ +    + P         W ++++ +   IR   L M ++ I 
Sbjct: 171 LMLFFLLKD----KEQMLNAVRRILPRNRGLAGQVWLEMNQQITNYIRGKVLEMVVVGIA 226

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
             LV    +++ G+   + L V+     +IP
Sbjct: 227 TYLV----FFVMGMNYALLLAVLVGFSVLIP 253


>gi|228987642|ref|ZP_04147756.1| hypothetical protein bthur0001_43120 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228772102|gb|EEM20554.1| hypothetical protein bthur0001_43120 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 361

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 33/183 (18%)

Query: 188 LDSLGE--HLF----PAYWKKISRIVPKVIR----STFLGMTIIAIGEGLVLGSAYWLAG 237
           L   GE  H+F    P+ W+   +I+ K I     S   G   + +  G V   ++W  G
Sbjct: 185 LKDYGEFYHIFWKLVPSKWRSTGQILAKEIDKSLGSYIRGQLFVCLVLGGVSALSFWFIG 244

Query: 238 VPSHVALGVITAIMAMIP------GGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIEL 289
           +   + LG+I  +  +IP      G  P    A  VS  LL+K  I  A        I  
Sbjct: 245 MKYPLLLGIIIGVTDIIPYFGPILGAIPTLMIAATVSTSLLVKAGITIA--------ILQ 296

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI------W 342
           F+    L P++VG  +++  +     L+ G    G++GL I  PVL  +  VI      W
Sbjct: 297 FVESNILSPYIVGKSLRMHPVVIMLALLVGGEVAGIVGLLISVPVLAVIRTVIVHVRPLW 356

Query: 343 KES 345
           K+ 
Sbjct: 357 KKE 359


>gi|47092709|ref|ZP_00230495.1| membrane protein, putative [Listeria monocytogenes str. 4b H7858]
 gi|47018897|gb|EAL09644.1| membrane protein, putative [Listeria monocytogenes str. 4b H7858]
          Length = 333

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 14/155 (9%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
           KVI + F    IIA+   ++   A W+ G P  + L ++  ++ +IP  G  IS   ++I
Sbjct: 185 KVIEAQF----IIALVNAILTTIALWILGFPQLMTLSIMVFLLGLIPVAGVIISLVPLTI 240

Query: 268 YLLIKGNI----FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
                G +    +    + +  A+E ++    L P L+     LP   TF  L+ G    
Sbjct: 241 IGYSIGGVEYIFYILVVVIIIHALESYV----LNPKLMSAKTNLPVFYTFIILIFGEHFF 296

Query: 324 GLLGLFIG-PVLMALIAVIWKESIMAIKENKEKIS 357
           G+ GL +G PV+M  + V+   +   I++ K+ IS
Sbjct: 297 GIWGLIVGIPVVMFFLDVLGVTNQEEIEQPKDTIS 331


>gi|229158006|ref|ZP_04286077.1| hypothetical protein bcere0010_41850 [Bacillus cereus ATCC 4342]
 gi|228625459|gb|EEK82215.1| hypothetical protein bcere0010_41850 [Bacillus cereus ATCC 4342]
          Length = 361

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 33/183 (18%)

Query: 188 LDSLGE--HLF----PAYWKKISRIVPKVIR----STFLGMTIIAIGEGLVLGSAYWLAG 237
           L   GE  H+F    P+ W+   +I+ K I     S   G   + +  G V   ++W  G
Sbjct: 185 LKDYGEFYHIFWKLVPSKWRSTGQILAKEIDKSLGSYIRGQLFVCLVLGGVSALSFWFIG 244

Query: 238 VPSHVALGVITAIMAMIP------GGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIEL 289
           +   + LG+I  +  +IP      G  P    A  VS  LL+K  I  A        I  
Sbjct: 245 MKYPLLLGIIIGVTDIIPYFGPILGAIPTLMIAATVSTSLLVKAGITIA--------ILQ 296

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI------W 342
           F+    L P++VG  +++  +     L+ G    G++GL I  PVL  +  VI      W
Sbjct: 297 FVESNILSPYIVGKSLRMHPVVIMLALLVGGEVAGIVGLLISVPVLAVIRTVIVHVRPLW 356

Query: 343 KES 345
           K+ 
Sbjct: 357 KKE 359


>gi|297543538|ref|YP_003675840.1| sporulation integral membrane protein YtvI [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296841313|gb|ADH59829.1| sporulation integral membrane protein YtvI [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 354

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 109/250 (43%), Gaps = 35/250 (14%)

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI-------IFMI 171
              + T ++S P ++  L E+ + +  +++I  FA       L++   +       +  +
Sbjct: 115 VDRIRTYYISLPPNITSLIESNMYS-ILNYISLFAKNLATWLLNFATKLPNFFFMTLITL 173

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG----------MTII 221
           +A FF  +D   I   LD +   + P++W + ++ +   +  TF G          +T +
Sbjct: 174 VATFFISKDKNLI---LDFIKRQI-PSHWAQHAKNIQIDLLKTFFGYLRAVAAIMLITFL 229

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP----GGAPISFTAVSIYLLIKGNIFN 277
            +  GLV+       G      LG+   I+  +P    G   I +   +I ++IK  +  
Sbjct: 230 EVSIGLVI------IGFDYPFLLGLFVTIVDALPVLGSGSVMIPWALYNI-IIIKNYMVG 282

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
              L L+  I + +V + + P +VG  I L  L T   +  GV+  G LGL IGPV + +
Sbjct: 283 IYLLILY--ILVVVVRQMIEPKIVGQSIGLHPLVTLLSMFIGVKLFGALGLIIGPVFVVV 340

Query: 338 IAVIWKESIM 347
              + +  I+
Sbjct: 341 FKALQRAEII 350


>gi|150398999|ref|YP_001322766.1| hypothetical protein Mevan_0245 [Methanococcus vannielii SB]
 gi|150011702|gb|ABR54154.1| protein of unknown function UPF0118 [Methanococcus vannielii SB]
          Length = 336

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 37/194 (19%), Positives = 88/194 (45%), Gaps = 9/194 (4%)

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
           + I+  +   ++F +DG +    +      ++    +     + +  ++ F+G  + +  
Sbjct: 144 IKILITVFLTYYFLKDGHNFKGAIMPHVPDVYAPQTELFMENLHEAYKNLFVGNALTSFT 203

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLF 282
            G++    +W  G+P+ V LG ++ I+ ++P  GG  I +  + ++ +  G    A  LF
Sbjct: 204 VGIISIIGFWAMGLPNPVTLGALSGILTLLPVVGGWTI-YMPLCLFYIATGMYLKALLLF 262

Query: 283 LWGAIELFIV-DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            +G + L +  D  +RP +V     +         + G   +G+ G  +GP+++     I
Sbjct: 263 GFGVLFLSLAPDFVIRPSIVSNESDIHPALLLIAFLMGPLALGITGFALGPIIVGTFDAI 322

Query: 342 WK-----ESIMAIK 350
           ++     +SI+ +K
Sbjct: 323 FRVRTGEDSIINLK 336


>gi|229032040|ref|ZP_04188023.1| hypothetical protein bcere0028_40850 [Bacillus cereus AH1271]
 gi|228729285|gb|EEL80279.1| hypothetical protein bcere0028_40850 [Bacillus cereus AH1271]
          Length = 361

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 78/184 (42%), Gaps = 27/184 (14%)

Query: 188 LDSLGE--HLF----PAYWKKISRIVPKVIR----STFLGMTIIAIGEGLVLGSAYWLAG 237
           L   GE  H+F    P+ W+   +++ K I     S   G   + +  G V   ++W  G
Sbjct: 185 LKDYGEFYHIFWKLVPSKWRSTGQMLAKEIDKSLGSYIRGQLFVCLVLGGVSVLSFWFIG 244

Query: 238 VPSHVALGVITAIMAMIP------GGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIEL 289
           +   + LG+I  +  +IP      G  P    A  VS  LLIK  I  A   FL   I  
Sbjct: 245 MKYPLLLGIIIGVTDIIPYFGPILGAIPTLMIAATVSTSLLIKAGITIAILQFLESNI-- 302

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMA 348
                 L P++VG  +++  +     L+ G    G++GL I  P+L  +  VI     + 
Sbjct: 303 ------LSPYIVGKSLRMHPVIIMLALLVGGEIAGIVGLLISVPILAVIRTVIVHVRPLL 356

Query: 349 IKEN 352
            KEN
Sbjct: 357 KKEN 360


>gi|282879126|ref|ZP_06287885.1| membrane family protein [Prevotella buccalis ATCC 35310]
 gi|281298768|gb|EFA91178.1| membrane family protein [Prevotella buccalis ATCC 35310]
          Length = 372

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 66/362 (18%), Positives = 148/362 (40%), Gaps = 33/362 (9%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +++F +L  + +L G   P   A +  +  +P+      K       +A+I T+  + + 
Sbjct: 19  LLIFFVLYLVNYLSGVLLPFFVAWLFAYLLYPLVKFVQYKMHVKVRAIAIIITMLAVAVV 78

Query: 75  IVPLLFLFYYGMLE----MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           I  L++     M+E    + ++++  +  + H        SD+  G + S+  TK+ +  
Sbjct: 79  IGGLVYAIIPPMIEQFGKLNDILNNWINQSTHS-------SDL--GSYISQWITKNRTE- 128

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                  E+F+K+     I +         L    S++  IIA        F I Q  + 
Sbjct: 129 ------IESFMKSKDFSDILKTGMPKVFTLLGQTASVVISIIASLITLLYTFFILQDYEF 182

Query: 191 LGEH---LFPA----YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           L ++   +FP     +W+++ + V + + +   G  ++++  G++ G    +   P  +A
Sbjct: 183 LTDNWIRIFPKKNRPFWEELMKDVERELNNYIRGQGLVSLILGILFGIGLSIINFPMAIA 242

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG-AIELFIV-----DKTLR 297
           LG++   M ++P    ++   +    ++K          ++G A+ +F++     D  L 
Sbjct: 243 LGIMMGFMNLVPYLHTLALVPMVFLSMLKAADTGQNFWIVFGLAMLVFLIVQVISDTVLT 302

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           P ++G  + L        L      +G +GL +   L  L+   W++ +   K+  E   
Sbjct: 303 PKIMGKAMNLNPAILLLSLSVWGTLLGFIGLIVALPLTTLLIAYWQKYVTREKKQDETTQ 362

Query: 358 SN 359
             
Sbjct: 363 EQ 364


>gi|326942172|gb|AEA18068.1| hypothetical protein CT43_CH4407 [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 355

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 78/184 (42%), Gaps = 27/184 (14%)

Query: 188 LDSLGE--HLF----PAYWKKISRIVPKVIR----STFLGMTIIAIGEGLVLGSAYWLAG 237
           L   GE  H+F    P+ W+   +++ K I     S   G   + +  G V   ++W  G
Sbjct: 179 LKDYGEFYHIFWKLVPSKWRGTGQMLAKEIDKSLGSYIRGQLFVCLVLGGVSALSFWFIG 238

Query: 238 VPSHVALGVITAIMAMIP------GGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIEL 289
           +   + LG+I  +  +IP      G  P    A  VS  LLIK  I  A        I  
Sbjct: 239 MKYPLLLGIIIGVTDIIPYFGPILGAIPTLMIAATVSTSLLIKAGITIA--------ILQ 290

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMA 348
           F+    L P++VG  +++  +     L+ G    G++GL I  P+L  +  VI     + 
Sbjct: 291 FVESNILSPYIVGKSLRMHPVIIMLALLVGGEVAGIVGLLISVPILAVIRTVIVHVRPLL 350

Query: 349 IKEN 352
            KEN
Sbjct: 351 KKEN 354


>gi|228941558|ref|ZP_04104107.1| hypothetical protein bthur0008_41950 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974488|ref|ZP_04135055.1| hypothetical protein bthur0003_42410 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981082|ref|ZP_04141383.1| hypothetical protein bthur0002_42430 [Bacillus thuringiensis Bt407]
 gi|228778623|gb|EEM26889.1| hypothetical protein bthur0002_42430 [Bacillus thuringiensis Bt407]
 gi|228785205|gb|EEM33217.1| hypothetical protein bthur0003_42410 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818114|gb|EEM64190.1| hypothetical protein bthur0008_41950 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 361

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 78/184 (42%), Gaps = 27/184 (14%)

Query: 188 LDSLGE--HLF----PAYWKKISRIVPKVIR----STFLGMTIIAIGEGLVLGSAYWLAG 237
           L   GE  H+F    P+ W+   +++ K I     S   G   + +  G V   ++W  G
Sbjct: 185 LKDYGEFYHIFWKLVPSKWRGTGQMLAKEIDKSLGSYIRGQLFVCLVLGGVSALSFWFIG 244

Query: 238 VPSHVALGVITAIMAMIP------GGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIEL 289
           +   + LG+I  +  +IP      G  P    A  VS  LLIK  I  A        I  
Sbjct: 245 MKYPLLLGIIIGVTDIIPYFGPILGAIPTLMIAATVSTSLLIKAGITIA--------ILQ 296

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMA 348
           F+    L P++VG  +++  +     L+ G    G++GL I  P+L  +  VI     + 
Sbjct: 297 FVESNILSPYIVGKSLRMHPVIIMLALLVGGEVAGIVGLLISVPILAVIRTVIVHVRPLL 356

Query: 349 IKEN 352
            KEN
Sbjct: 357 KKEN 360


>gi|47566578|ref|ZP_00237400.1| hypothetical protein membrane Spanning protein [Bacillus cereus
           G9241]
 gi|47556608|gb|EAL14940.1| hypothetical protein membrane Spanning protein [Bacillus cereus
           G9241]
          Length = 361

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 33/183 (18%)

Query: 188 LDSLGE--HLF----PAYWKKISRIVPKVIR----STFLGMTIIAIGEGLVLGSAYWLAG 237
           L   GE  H+F    P+ W+   +I+ K I     S   G   + +  G V   ++W  G
Sbjct: 185 LKDYGEFYHIFWKLVPSKWRSTGQILAKEIDKSLGSYIRGQLFVCLVLGGVSALSFWFIG 244

Query: 238 VPSHVALGVITAIMAMIP------GGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIEL 289
           +   + LG+I  +  +IP      G  P    A  VS  LL+K  I  A        I  
Sbjct: 245 MKYPLLLGIIIGVTDIIPYFGPILGAIPTLMIAATVSTSLLVKAGITIA--------ILQ 296

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI------W 342
           F+    L P++VG  +++  +     L+ G    G++GL I  PVL  +  VI      W
Sbjct: 297 FVESNILSPYIVGKSLRMHPVIIMLALLVGGEVAGIVGLLISVPVLAVIRTVIVHVRPLW 356

Query: 343 KES 345
           K+ 
Sbjct: 357 KKE 359


>gi|113477436|ref|YP_723497.1| hypothetical protein Tery_4001 [Trichodesmium erythraeum IMS101]
 gi|110168484|gb|ABG53024.1| protein of unknown function UPF0118 [Trichodesmium erythraeum
           IMS101]
          Length = 368

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 89/206 (43%), Gaps = 22/206 (10%)

Query: 166 SIIFMIIALFFFYRDGF--SISQQLDSLGEHLFPAYWKKISRIVPKVIRST------FLG 217
           SI+ +I+ALF     G+  S SQ L +    LFP  W K  R+  +VI  T        G
Sbjct: 158 SIVSLILALFI---SGYMVSDSQTLITSIVKLFPQPWDK--RLEDQVIPVTKRMGGYIRG 212

Query: 218 MTIIAIGEGLVLGSAYWLAGVPS-HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIF 276
             I++   GL   +     G+    + LG I A+  +IP   PI   AV   ++    I 
Sbjct: 213 RIIVSAILGLATTTGLGFLGLQDFSLGLGAIAAVTNLIPFIGPI-LGAVPALIV---AIA 268

Query: 277 NATCLFLWGAIELFIVDKT----LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
               LFLW  I  +I+       L P LVG  + +  L     ++ GV+ +G++G  I P
Sbjct: 269 KGGWLFLWVIILYYIIQNIETYILDPLLVGSSVGVHPLYQLLSVLVGVQLLGIIGALIIP 328

Query: 333 VLMALIAVIWKESIMAIKENKEKISS 358
              A  A + +   +  K   E I S
Sbjct: 329 PWFAGAAALVENLYLKPKLEAENIQS 354


>gi|295397298|ref|ZP_06807392.1| protein of hypothetical function UPF0118 [Aerococcus viridans ATCC
           11563]
 gi|294974449|gb|EFG50182.1| protein of hypothetical function UPF0118 [Aerococcus viridans ATCC
           11563]
          Length = 406

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 15/185 (8%)

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL----GMTI 220
           L I+F I  LF   +    +++Q+D L          ++   V +V   TF     GM I
Sbjct: 187 LGILFAIYILFSKEK----LAKQVDRLLTVYVRDDIHQLIENVARVANETFAKFISGMVI 242

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC 280
            +I  G ++    ++  VP    LGV+  +MA+IP        AV + +L+     N T 
Sbjct: 243 ESIILGTLVTVGLFILQVPYAAMLGVLQGVMALIPIIGAFLSGAVGVLILLA---LNPTY 299

Query: 281 LFLWGAIELFIVD---KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMA 336
             ++    LF+       + P +VG  I LP +   F +  G   MG+ G+ IG PVL +
Sbjct: 300 ALIYLIFVLFVQQLEGDLIYPRVVGDSIGLPSMWVLFAVTVGGGLMGIPGMLIGVPVLAS 359

Query: 337 LIAVI 341
           +  +I
Sbjct: 360 IYKII 364


>gi|220906628|ref|YP_002481939.1| hypothetical protein Cyan7425_1198 [Cyanothece sp. PCC 7425]
 gi|219863239|gb|ACL43578.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7425]
          Length = 390

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 41/202 (20%), Positives = 92/202 (45%), Gaps = 10/202 (4%)

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
            LD  ++++  I+  F+  + G    +   SL + L P   +  S+ +    ++ F+G  
Sbjct: 171 LLDVLINVVLTIVLTFYLLQHG---DELWSSLIQWLPPKVQEPFSQTLRLSFQNYFIGQL 227

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNAT 279
           I++      L S + L  VP  +  G+   +MA++P G  +    +++ + ++ +++   
Sbjct: 228 ILSTCMAAGLISTFLLLKVPFGLLFGLTIGLMALVPFGGTVGIITITLLVTLQ-DVWLGL 286

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
            +     I   I++  + P ++G    L  +  F  ++ G +  GLLG+ +      +I 
Sbjct: 287 RVLGASVIVQQILENLIAPRIIGSVTGLNPVWVFLSILAGAKIGGLLGVVVAVPTAVVI- 345

Query: 340 VIWKESIMAIKE--NKEKISSN 359
              K  +MA++E  N+    +N
Sbjct: 346 ---KAGLMALRERMNQSNTEAN 364


>gi|326202288|ref|ZP_08192157.1| sporulation integral membrane protein YtvI [Clostridium
           papyrosolvens DSM 2782]
 gi|325987406|gb|EGD48233.1| sporulation integral membrane protein YtvI [Clostridium
           papyrosolvens DSM 2782]
          Length = 353

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 76/353 (21%), Positives = 152/353 (43%), Gaps = 51/353 (14%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSF----ISKKEESSTFLAVIATVSVMCLF 74
           +I +S+ +L  FFAP + ALI+ + + P+        IS+K  ++  ++++ T+S++ L 
Sbjct: 23  VIYLSMSYLLPFFAPFVIALIVSYINEPVIKLLQRLKISRKAAAA--VSLLFTMSLLGLV 80

Query: 75  IVPLLFLFYYGMLEMKELVSKV-----VLANQHGIPVPRWLSDIPGGMWASELWTKHL-- 127
           +   +   Y  ++ +++ ++K      V  N        + + +P  + ++   TK+L  
Sbjct: 81  LTVGILKMYNELIVLQDNLTKYSSDISVKINGLIHKATLFYNGLPDQVTST--ITKNLIS 138

Query: 128 -SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD-GFSIS 185
            S    L I S      N +  IPR      +  L              FFYR   FS  
Sbjct: 139 FSEKIGLIITSVIQYVINTVSSIPRLTVFVIVTILGTYFISSDKKSISSFFYRQLPFSWR 198

Query: 186 QQLDSLGEHLFPA---YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           + + SL +  F A   Y+K I            +G T I +  GL +           +V
Sbjct: 199 KNIVSLKKDTFKALLGYFKAIL---------ILMGFTFIEVSIGLFI----------LNV 239

Query: 243 ALGVITAIMAMIPGGAPISFTAVS-----IYLLIKGNI---FNATCLFLWGAIELFIVDK 294
               + A++  +    PI  T V      ++ +I G++      + +++ G     ++ +
Sbjct: 240 DYAFLIALLVGLSDAIPIMGTGVVMVPWILWTVISGDMPLALGLSIIYVLG----ILIRQ 295

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            + P +VG  I L  L T F +  G++  G++G+F+GP+ + ++  +    +M
Sbjct: 296 IMEPKIVGSQIGLHPLVTLFAMYIGLKFFGIIGMFVGPISIIVVKKLQDSGVM 348


>gi|295426406|ref|ZP_06819056.1| membrane protein [Lactobacillus amylolyticus DSM 11664]
 gi|295063774|gb|EFG54732.1| membrane protein [Lactobacillus amylolyticus DSM 11664]
          Length = 404

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 24/194 (12%)

Query: 164 CLSIIFMIIA--------LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
            +SII MII         LFF  +DG ++   +       +   + K+   +   I S  
Sbjct: 178 AVSIITMIIMTLMTAPFLLFFMLKDGHNLRPYITKFAPQRWQKSFGKLLWDINNAISSYI 237

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTA-------VSI 267
            G   +A   G++    Y + G+P    L ++   + +IP  G  I+F          S+
Sbjct: 238 RGQITVAFWVGVMFAIGYTVVGLPYGYTLAILAGFLNLIPYFGTFIAFIPALVIGIMTSV 297

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            +LIK        + +  AIE  I  + + P ++G  +++  + T   L+G     GL G
Sbjct: 298 PMLIK--------VLIVFAIEQAIEGRVISPLVMGNKLEMHPITTILLLIGASAVWGLWG 349

Query: 328 LFIGPVLMALIAVI 341
           +  G  + A++ +I
Sbjct: 350 VVFGIPIYAVLKII 363


>gi|312109941|ref|YP_003988257.1| sporulation integral membrane protein YtvI [Geobacillus sp.
           Y4.1MC1]
 gi|311215042|gb|ADP73646.1| sporulation integral membrane protein YtvI [Geobacillus sp.
           Y4.1MC1]
          Length = 372

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 83/361 (22%), Positives = 156/361 (43%), Gaps = 38/361 (10%)

Query: 12  MRWMIMFIILV----SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +R++++  I+V    +LY++     P + A  I F   P+   F+  K +   +LAV+ T
Sbjct: 10  LRFLLVIAIVVLGAIALYYVSTVIYPFIIAFFIAFFINPLVD-FLETKAKMPRWLAVVVT 68

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-------------QHGIPVPRWLSDIP 114
           + V+   +  L+ L    ++   + ++ VV  N             Q  IP+   L+ + 
Sbjct: 69  LIVLFALVAGLVTLLIAEIVSGTQYLANVVPENFQKLVKYIETFFAQQIIPLYHDLAALF 128

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL---DYCLSIIFMI 171
             + AS+  T  +++ Q++     T + T    F  R       +     +     IF +
Sbjct: 129 KNLDASQQDTI-MNNIQAVG----TQIATTVGQFTQRVLQNIPQLLTWLPNAATVFIFSL 183

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM-----TIIAIGEG 226
           +A FF  +D +    +L  + + + PA   K  + V   ++    G      T+I+I   
Sbjct: 184 LATFFISKDWY----RLTGMVQKILPAKAHKSGKRVFLDLKKALFGFIKAQATLISITTV 239

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           +VL     L GV   + + +I  ++ ++P  G  I F    IY  I GN+  A  L +  
Sbjct: 240 IVLIGLLIL-GVDYAITIALIIGLVDILPYLGTGIVFVPWIIYAAISGNVPFAIGLGVLY 298

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            I L +  + + P ++   I L  L T   L  G + +G LGL +GPV + +I  +   +
Sbjct: 299 IIVL-VQRQIMEPKVLSSSIGLDPLATLVALFVGFKLIGFLGLIVGPVTLVIIRTLHSAN 357

Query: 346 I 346
           +
Sbjct: 358 V 358


>gi|154243769|ref|YP_001409342.1| permease-like protein [Xanthobacter autotrophicus Py2]
 gi|154162891|gb|ABS70106.1| permease-like protein [Xanthobacter autotrophicus Py2]
          Length = 239

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 7/68 (10%)

Query: 282 FLWGAIELFI-------VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
           +L GAI L +       +D  LRP LVG   +LP        VGG+  +G+ G  IGP++
Sbjct: 162 YLTGAILLAVGVLVISTIDNFLRPALVGRGRRLPDYVVLISTVGGLSLIGMNGFVIGPLI 221

Query: 335 MALIAVIW 342
            AL    W
Sbjct: 222 AALFVADW 229


>gi|322833961|ref|YP_004213988.1| hypothetical protein Rahaq_3267 [Rahnella sp. Y9602]
 gi|321169162|gb|ADW74861.1| protein of unknown function UPF0118 [Rahnella sp. Y9602]
          Length = 354

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 115/269 (42%), Gaps = 40/269 (14%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGF-TSWP---IYSSFISKKEE 57
           R    +PQ I    I+      LYFL G  AP+L A+++ +   WP   +    +S+   
Sbjct: 10  RRRFTDPQAIALLAILVAGFCILYFLNGILAPLLVAIVLAYLLEWPTVRLQHVGLSRTLS 69

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP-RWLSDIPGG 116
            S  L + A + ++ +F++  +  +  G+  M +L S +         +P R+ + +  G
Sbjct: 70  VSVVLIIFAGILLLGMFVIAPV-TWQQGVNLMTDLPSMLNRFYDFAATLPKRYPALVDAG 128

Query: 117 ---MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
              M A  + +K       L  L E+ +K +        AS  G++ L   L ++ M++ 
Sbjct: 129 IIDMMAENMRSK-------LSGLGESVVKYS-------LASLVGLLTLAIYLILVPMMV- 173

Query: 174 LFFFYRDGFSISQQLDSLGEHLFP-------AYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
            FF  +D     +Q+ S    + P         W ++++ V   IR   L M I+ +   
Sbjct: 174 -FFLLKD----KEQMLSAVRRVLPRDRGLAGQVWVEMNQQVTNYIRGKVLEMIIVGVATY 228

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           LV    +W+  +   + L V+  +  +IP
Sbjct: 229 LV----FWVMDLHYSLLLAVLVGVSVLIP 253


>gi|295699812|ref|YP_003607705.1| hypothetical protein BC1002_4201 [Burkholderia sp. CCGE1002]
 gi|295439025|gb|ADG18194.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1002]
          Length = 364

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 104/241 (43%), Gaps = 19/241 (7%)

Query: 126 HLSHPQSLKILS--ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI---IALFFFYRD 180
           H   P   +I+    + ++T     +P  A   G+  +    ++I+++   I  F   +D
Sbjct: 115 HFLEPLRERIVDFVRSQIETGSDKAVP-LARSLGLGVVHAASNLIYLVLIPILSFLLIKD 173

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +     +L        W +I   V  ++      +  +++      G A+ L GVP 
Sbjct: 174 GERMRDAFLALLNRRHRVLWSEIVDDVNVLLSKYVRALLFLSLATLFGYGVAFSLLGVPY 233

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLW-----GAIELFIVDKT 295
              L V   ++  +P   P++  AV+I L++   +F+     LW     G   LF  D  
Sbjct: 234 AFLLAVSAGLLEFVPFAGPLA--AVAITLVVA--VFSGYPHLLWLVIFIGLYRLF-QDYV 288

Query: 296 LRPFLVGGPIKL-PFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENK 353
           L P+L+   +++ PFL    GL+ G +  G+ G+F+  PV+  L  VI +  +     ++
Sbjct: 289 LNPYLMSEGVEVSPFL-VIVGLLAGDQLGGVAGIFLAVPVIATLKIVIGRARVFYSASHE 347

Query: 354 E 354
           +
Sbjct: 348 Q 348


>gi|150377302|ref|YP_001313897.1| hypothetical protein Smed_5187 [Sinorhizobium medicae WSM419]
 gi|150031849|gb|ABR63964.1| protein of unknown function UPF0118 [Sinorhizobium medicae WSM419]
          Length = 381

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
           F    LF    I L I+D  ++P LV   +  P L    G++GG  + GL+GLF+GP+++
Sbjct: 290 FGMAALFTILLIPLLIIDNVMKPILVARGLSTPTLVILLGVLGGTLSYGLIGLFLGPIVL 349

Query: 336 AL 337
           ++
Sbjct: 350 SV 351


>gi|116629975|ref|YP_815147.1| permease [Lactobacillus gasseri ATCC 33323]
 gi|238853587|ref|ZP_04643957.1| transport protein [Lactobacillus gasseri 202-4]
 gi|282851417|ref|ZP_06260782.1| membrane family protein [Lactobacillus gasseri 224-1]
 gi|311110392|ref|ZP_07711789.1| membrane protein [Lactobacillus gasseri MV-22]
 gi|116095557|gb|ABJ60709.1| Predicted permease [Lactobacillus gasseri ATCC 33323]
 gi|238833805|gb|EEQ26072.1| transport protein [Lactobacillus gasseri 202-4]
 gi|282557385|gb|EFB62982.1| membrane family protein [Lactobacillus gasseri 224-1]
 gi|311065546|gb|EFQ45886.1| membrane protein [Lactobacillus gasseri MV-22]
          Length = 393

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 83/185 (44%), Gaps = 9/185 (4%)

Query: 164 CLSIIFMII-----ALFFFYRDGFSISQQLDSLG-EHLFPAYWKKISRIVPKVIRSTFLG 217
            +++IFM +      LFF  +DG  ++  +     + L P++   +S I    + S   G
Sbjct: 181 VITMIFMTLLTAPFVLFFMLKDGHRLNPYVTKFAPQRLQPSFSSLLSDI-NGAVASYIRG 239

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIF 276
              +A   G++    Y + G+   + L V+  ++ MIP  G  I+F    I  LI   + 
Sbjct: 240 QITVAFWVGVMFAIGYSVIGLNYGITLAVLAGVLNMIPYFGTFIAFIPAIILGLISSPMM 299

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
               L ++ AIE  +  + + P ++G  + +  + T   L+G     GL G+     + A
Sbjct: 300 LVKVLIVF-AIEQTLEGRVISPLVMGNKMNMNPVTTILLLIGASAVAGLWGVIFAIPVYA 358

Query: 337 LIAVI 341
           +I +I
Sbjct: 359 VIKII 363


>gi|290894088|ref|ZP_06557061.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|290556343|gb|EFD89884.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
          Length = 345

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 14/155 (9%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
           KVI + F    IIA+   ++   A W+ G P  + L ++  ++ +IP  G  IS   ++I
Sbjct: 197 KVIEAQF----IIALVNTILTTIALWILGFPQLMTLSIMVFLLGLIPVAGVIISLVPLTI 252

Query: 268 YLLIKGNI----FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
                G +    +    + +  A+E ++    L P L+     LP   TF  L+ G    
Sbjct: 253 IGYSIGGVEYIFYILVVVIIIHALESYV----LNPKLMSAKTNLPVFYTFIILIFGEHFF 308

Query: 324 GLLGLFIG-PVLMALIAVIWKESIMAIKENKEKIS 357
           G+ GL +G PV+M  + V+   +   I++ K+ IS
Sbjct: 309 GIWGLIVGIPVVMFFLDVLGVTNQEEIEQPKDTIS 343


>gi|325290064|ref|YP_004266245.1| protein of unknown function UPF0118 [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324965465|gb|ADY56244.1| protein of unknown function UPF0118 [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 349

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 46/215 (21%), Positives = 95/215 (44%), Gaps = 13/215 (6%)

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLD----YCLSIIFMIIA---LFFFYRDGFS 183
           + +K+  E  +   G      FA+R+ + FL+      +S+ +++++     +F  D   
Sbjct: 119 EVIKLYDEKIIYAQG------FATRWLVNFLNDIPGILVSLTYLVLSPVLAIYFLADWRR 172

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           ++Q +  L    +   W+ + + +  +I +   G  I A+  G+++G    L G    + 
Sbjct: 173 MTQTMIWLVPRKYRNSWRHLLKEINLIIVNYIHGNLIDAVLVGVIIGIGAALLGTEYALL 232

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           +G+I  I  +IP   P+     S+ L +  +   A  + +   I   I    + P L+  
Sbjct: 233 IGIICGITNIIPYFGPLIGAVPSLMLALSNSPIMAVKILVLILIVQQIDGNLINPKLMSD 292

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
            + L  L   F L+ G +  GLLG+ +   L A++
Sbjct: 293 KVGLRPLTVVFSLLAGEKLAGLLGMLVAIPLTAIM 327


>gi|167040126|ref|YP_001663111.1| hypothetical protein Teth514_1488 [Thermoanaerobacter sp. X514]
 gi|307724555|ref|YP_003904306.1| hypothetical protein Thet_1415 [Thermoanaerobacter sp. X513]
 gi|166854366|gb|ABY92775.1| protein of unknown function UPF0118 [Thermoanaerobacter sp. X514]
 gi|307581616|gb|ADN55015.1| protein of unknown function UPF0118 [Thermoanaerobacter sp. X513]
          Length = 341

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 135/335 (40%), Gaps = 44/335 (13%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESS-----TFLAVIATVSVMCLFIVPLLFL 81
           +K   +P   + +I +   P+   F SK    S      FL V + +     +IVPLL  
Sbjct: 29  IKNILSPFFVSALIAYLLNPMVKFFNSKGFSISLSILLVFLIVASGILFFSFYIVPLLIN 88

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH--PQSLKILSET 139
            +  +L+M                +P +  +I   +   +L   +LS+  PQ  K+L + 
Sbjct: 89  EFIALLQM----------------IPFYAEEIQKLLI--QLKFNYLSYLPPQVEKVLDKN 130

Query: 140 FLKTNGIDFIPRFASRFGMI--FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
               N   F     S F  +   L   + II + I  F+F +D     ++++ +    + 
Sbjct: 131 LGSLNN-AFTYHIDSAFKSVITILKDAVDIIIIPIVTFYFLKDKKVFKEEIERILPQKYS 189

Query: 198 AYW----KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
             +    KKI +I+ K +R+     T +AI   + L     L  V     +GV+  I+ +
Sbjct: 190 TKFFNILKKIDKILSKYLRAQIYISTFVAIFTMIGLS----LIKVKYAFLIGVLAGILNI 245

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT----LRPFLVGGPIKLPF 309
           IP   PI    +SI   +   + ++     W  I   +V +     + P ++   + L  
Sbjct: 246 IPYVGPI----LSIIPTVLIGLLDSLTKGFWALIICLLVQQVENAFITPKIMSDSVGLHP 301

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           +   F L+ G    G+ GL +   ++A+I  I  E
Sbjct: 302 VTVIFSLIAGGELFGIWGLLLSVPIVAMIKAIVIE 336


>gi|296447406|ref|ZP_06889332.1| protein of unknown function UPF0118 [Methylosinus trichosporium
           OB3b]
 gi|296255109|gb|EFH02210.1| protein of unknown function UPF0118 [Methylosinus trichosporium
           OB3b]
          Length = 360

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 14/88 (15%)

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWK-KISRIVPKVIRSTFL---GMTIIAIGEGLVLGSA 232
            YR+G S           LFP  W+ ++   +  V R+  L   G  I  +  G + G A
Sbjct: 169 LYREGLS----------RLFPREWRGEVEETIDTVARALRLWLFGQLIEMVIIGAMSGVA 218

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPI 260
            WL G+PS +ALGV+  +   +P   PI
Sbjct: 219 VWLIGLPSALALGVVAGVAEFVPYLGPI 246


>gi|116252884|ref|YP_768722.1| transmembrane transporter protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257532|emb|CAK08629.1| putative transmembrane transporter protein [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 368

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 7/116 (6%)

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAM--IPGGAPISFT-AVSIYLLIKGNIFNATCL 281
           + +++G  ++  G+P+  AL ++T ++A+  IP   P+  T  V  Y+ +      A   
Sbjct: 232 QSMLVGIGFFAIGLPAAGALTLVTFLLAVVQIP---PLLLTLPVMAYVFVTEATTPAIIF 288

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
            +W      + D  L+P ++G    +P      G++GG+   GLLG+F+GPVL+A+
Sbjct: 289 AIWSFFA-GLSDNLLKPLMLGRGSDVPMPVILVGVIGGMIADGLLGIFVGPVLLAV 343


>gi|42518755|ref|NP_964685.1| hypothetical protein LJ0830 [Lactobacillus johnsonii NCC 533]
 gi|41583041|gb|AAS08651.1| hypothetical protein LJ_0830 [Lactobacillus johnsonii NCC 533]
          Length = 393

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 83/185 (44%), Gaps = 9/185 (4%)

Query: 164 CLSIIFMII-----ALFFFYRDGFSISQQLDSLG-EHLFPAYWKKISRIVPKVIRSTFLG 217
            +++IFM +      LFF  +DG  ++  +     + L P++   +S I    + S   G
Sbjct: 181 VITMIFMTLLTAPFVLFFMLKDGHRLNSYVTKFAPKKLQPSFSSLLSDI-NGAVASYIRG 239

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIF 276
              +A   G++    Y + G+   + L V+  I+ MIP  G  I+F    I  LI   + 
Sbjct: 240 QITVAFWVGVMFAIGYSVIGLNYGITLAVLAGILNMIPYFGTFIAFIPAIILGLISSPMM 299

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
               L ++ AIE  +  + + P ++G  + +  + T   L+G     GL G+     + A
Sbjct: 300 LIKVLIVF-AIEQTLEGRVISPLVMGNKMNMNPVTTILLLIGASAVAGLWGVIFAIPVYA 358

Query: 337 LIAVI 341
           +I +I
Sbjct: 359 VIKII 363


>gi|148974917|ref|ZP_01811897.1| hypothetical membrane spanning protein [Vibrionales bacterium
           SWAT-3]
 gi|145965426|gb|EDK30675.1| hypothetical membrane spanning protein [Vibrionales bacterium
           SWAT-3]
          Length = 355

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 83/190 (43%), Gaps = 2/190 (1%)

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
           F  + AS  G +   +   II  IIA   F  +       +  L   L      ++ ++ 
Sbjct: 150 FATKAASILGSLGGGFIQFIISTIIA-GAFMSNADKCQTGVTHLVARLTDGKGVELVQLS 208

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
              +RS   G+  +A+ + ++      +AGVP+     +   ++A+I     ++     I
Sbjct: 209 KSTVRSVVQGVIGVAVIQSIMSAIGLVIAGVPAAAMWALAVLLIAIIQLPPILALLPAII 268

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           Y+    +   A+   +W  I +   D  L+P L+     +P L    G +GG+   G++G
Sbjct: 269 YMFSVESTLAASFFLVW-CILVSGSDAILKPMLLSRGSHIPMLVILLGALGGMAMSGIVG 327

Query: 328 LFIGPVLMAL 337
           LF+G V+++L
Sbjct: 328 LFVGAVILSL 337


>gi|146300706|ref|YP_001195297.1| hypothetical protein Fjoh_2957 [Flavobacterium johnsoniae UW101]
 gi|146155124|gb|ABQ05978.1| protein of unknown function UPF0118 [Flavobacterium johnsoniae
           UW101]
          Length = 366

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 39/190 (20%), Positives = 87/190 (45%), Gaps = 10/190 (5%)

Query: 159 IFLDYCLSIIFMIIALFFFYRDGFSI--SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
           + LD  + II+    LF  Y++ F +  ++ +      +      +I   +   I S  +
Sbjct: 153 VLLDSTIIIIYTF--LFLIYKEHFKLFLAKLISKENHSVLKDILSQIKVSINNYIVSLII 210

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIF 276
            M ++++  GL L    W+ G+   + LG+IT I+ +IP    +    +++   + G+  
Sbjct: 211 EMIVVSVLTGLGL----WIIGIKYFILLGLITGILNLIPYIGILVAGIITVLASLTGSAE 266

Query: 277 NATCL--FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
            +  L   +   I  FI +  L P ++   +++    +  G++ G    G+ G+F+   L
Sbjct: 267 ISMILGILIVNIIVQFIDNNLLVPLIINTKVEINAFVSIMGIIVGGAAAGISGMFLAIPL 326

Query: 335 MALIAVIWKE 344
           +A++ +I+  
Sbjct: 327 LAILKIIFDR 336


>gi|164688257|ref|ZP_02212285.1| hypothetical protein CLOBAR_01902 [Clostridium bartlettii DSM
           16795]
 gi|164602670|gb|EDQ96135.1| hypothetical protein CLOBAR_01902 [Clostridium bartlettii DSM
           16795]
          Length = 391

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 10/179 (5%)

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVP--KVIRSTFLGMTIIAIGEGLVLGSAYWLA---- 236
            +S QL  L     P   K + ++V   K+   TF         E L+LGS +++     
Sbjct: 209 KLSVQLKKLLYAFLPE--KIVDKMVEVGKLTHKTFTNFFTYQCIECLILGSMFFVTMVIL 266

Query: 237 GVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
            +P  + + V+  IMA+IP  G  I+F   SI L++  N        +  A+   I    
Sbjct: 267 KIPYALLISVMITIMALIPIFGLCIAFIIASI-LIVMVNPIKVIVFAILFAVLQQIEGNL 325

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           + P +VG  I LP +   F +  G + MG++G+ +   L ++I  + ++S+    +N++
Sbjct: 326 IYPRVVGKSIGLPPIWVIFVITLGSKLMGIVGMILFIPLSSVIYTLLRKSVYKRIQNRK 384


>gi|303239293|ref|ZP_07325821.1| sporulation integral membrane protein YtvI [Acetivibrio
           cellulolyticus CD2]
 gi|302593079|gb|EFL62799.1| sporulation integral membrane protein YtvI [Acetivibrio
           cellulolyticus CD2]
          Length = 360

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 23/157 (14%)

Query: 211 IRSTFLGMTI----IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP----GGAPISF 262
           IR+  + M+I    ++IG G++        GV  ++ LG++ +I+  +P    GG  I +
Sbjct: 214 IRAQLILMSITFVELSIGFGII--------GVRQNLLLGLLVSIIDALPILGTGGVLIPW 265

Query: 263 TAVSIYLLIKGNI-FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
              SIY  I G+I    + + L+G +   +V + + P ++G  I L  L T   +  G+R
Sbjct: 266 ---SIYNFITGDIRMGISLIILYGVV--LVVRQMIEPKVLGQQIGLHPLVTLLSMYVGLR 320

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
               +G+ IGP+ + L+  I  + I   K  KE +  
Sbjct: 321 VFSFIGMIIGPITILLLKNIL-QGIFKKKSFKEYVKE 356


>gi|94967597|ref|YP_589645.1| hypothetical protein Acid345_0566 [Candidatus Koribacter versatilis
           Ellin345]
 gi|94549647|gb|ABF39571.1| protein of unknown function UPF0118 [Candidatus Koribacter
           versatilis Ellin345]
          Length = 394

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 80/170 (47%), Gaps = 4/170 (2%)

Query: 176 FFYRDGFSISQQLDSL-GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           F  +D   +   L ++ GE     ++ ++   V  ++        ++AI  GLV  +A  
Sbjct: 203 FLLKDKRDLRLSLQNIVGEPRKREFFGQLITDVDAMLSQFVRAQLLLAIISGLVYTAALS 262

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIV 292
           +  VP    LG +  ++  +P   P +  AV I  +  G  N  +   + ++  +   + 
Sbjct: 263 VLQVPYAYILGAVGGLLEFVPLVGP-AIAAVGIVGVCFGTPNFHHTLWVVVFLGVWRLLQ 321

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           D  + P L+GG ++L  L T FG++ G    G+LG+++   +MA I +++
Sbjct: 322 DYVISPRLLGGKVELHPLLTIFGVLAGGEVAGVLGIYLSVPVMATIRILF 371


>gi|311032815|ref|ZP_07710905.1| hypothetical protein Bm3-1_20134 [Bacillus sp. m3-13]
          Length = 355

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 46/246 (18%), Positives = 102/246 (41%), Gaps = 7/246 (2%)

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           V ++  D P  +  +E  TK L    +  ++S    K  G+ F+   + R G        
Sbjct: 100 VVQFAEDFPAFLEKNEEQTKELMDDNNFGLISYEEAKKRGLAFLKEQSQRIGENVSSIIS 159

Query: 166 SI-----IFMIIA--LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
           SI     I +++   LF+F +DG  +   +  +  +      K++   + K + +   G 
Sbjct: 160 SITNFVTILVVVPFILFYFLKDGHKLLPFILKMLPNKHHDEGKRLLTDIDKTLSTYIGGQ 219

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA 278
            I+A+  G ++   Y + G+   + L +   I A++P   P      ++ + +  + F  
Sbjct: 220 MIVALVNGFLMYIGYLIIGLDYALVLALFIVITAVVPIIGPALGVLPAVIIGLMTDPFMV 279

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             + +  AI   I    + P ++G  + +  L     L+   +  G +G+ +   + +++
Sbjct: 280 VKILILLAIVQQIEGNLVSPQIIGNKLSIHPLTVILLLLAAGKLYGFIGILLAVPVYSVL 339

Query: 339 AVIWKE 344
            V+ K 
Sbjct: 340 KVVTKN 345


>gi|229087925|ref|ZP_04220036.1| hypothetical protein bcere0022_44800 [Bacillus cereus Rock3-44]
 gi|228695393|gb|EEL48267.1| hypothetical protein bcere0022_44800 [Bacillus cereus Rock3-44]
          Length = 342

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 6/145 (4%)

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GG 257
           + KK +R   KVI + FL    IAI   ++   A W+ G P  + L ++  ++ +IP  G
Sbjct: 190 FGKKFARSFGKVIEAQFL----IAIVNCVLSVIALWVLGFPQLLGLALMIFLLGLIPVAG 245

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
             IS   + +     G+I     + +  A+   +    L P  +     LP   TF  L+
Sbjct: 246 VIISLVPLCMIAYNIGSITYVVYILIIVAVIHALESYVLNPKFMSQKTNLPIFYTFMVLI 305

Query: 318 GGVRTMGLLGLFIG-PVLMALIAVI 341
                +G+ GL IG PV M L+ V+
Sbjct: 306 FSEHFLGVWGLIIGIPVFMFLLDVL 330


>gi|226310975|ref|YP_002770869.1| hypothetical protein BBR47_13880 [Brevibacillus brevis NBRC 100599]
 gi|226093923|dbj|BAH42365.1| conserved hypothetical membrane protein [Brevibacillus brevis NBRC
           100599]
          Length = 376

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 4/111 (3%)

Query: 238 VPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCL-FLWGAIELFIVDKT 295
           V   + +G+IT ++ ++P  G    F    IY+  KGN      L  L+G + +F   + 
Sbjct: 255 VEYAITIGLITGLVDLLPYLGTGTVFVPWIIYMFFKGNYTMVIGLSILYGVVLIF--RQI 312

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           + P +V   + L  L T   L  G++  G LGL IGPV + +I  + K ++
Sbjct: 313 IEPKVVAENVGLDPLLTLVALFVGLQLFGFLGLIIGPVSLVMINALVKANV 363


>gi|224372723|ref|YP_002607095.1| acid membrane antigen A [Nautilia profundicola AmH]
 gi|223589133|gb|ACM92869.1| acid membrane antigen A [Nautilia profundicola AmH]
          Length = 332

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 84/179 (46%), Gaps = 15/179 (8%)

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGL 227
           +I +FFF+   +   +++    + + P   K++ ++     +V+   F      AI EG+
Sbjct: 146 LIVIFFFFATLYG--KEIMEFFKKVIPLEEKQLEKLFFGTSEVMSVVFYSTVFTAILEGI 203

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           + G    + G  +     ++ A  ++IP  G  I +  VS+YL   GN   A  + L+  
Sbjct: 204 LFGIIAKVYGF-NFFFFTIMYAFSSLIPVIGGVIMWGPVSLYLYSIGNTTGAVVVALYSI 262

Query: 287 IELFIV-DKTLRPFLV-------GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           I + I+ D  ++P ++           +L  L  FF +V G+ + GL G+ IGP + A+
Sbjct: 263 IVISIIADTFIKPIIIEFVKKTFDADTELNSLLIFFSIVAGLSSFGLWGIIIGPAVTAM 321


>gi|303229262|ref|ZP_07316057.1| putative membrane protein [Veillonella atypica ACS-134-V-Col7a]
 gi|303231297|ref|ZP_07318033.1| putative membrane protein [Veillonella atypica ACS-049-V-Sch6]
 gi|302514027|gb|EFL56033.1| putative membrane protein [Veillonella atypica ACS-049-V-Sch6]
 gi|302516035|gb|EFL57982.1| putative membrane protein [Veillonella atypica ACS-134-V-Col7a]
          Length = 373

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 54/268 (20%), Positives = 108/268 (40%), Gaps = 50/268 (18%)

Query: 121 ELWTKHLSHPQSLKILSETFLKTNG---IDFIPRFASRFGM-------IFLDYCLSIIFM 170
           + W  HLS+   L          NG   +++   + ++ G          L + ++I   
Sbjct: 124 QQWIYHLSNTVPLASNPTVLNTLNGESIVNYTREWGTKGGTYVVNTMGTILSWTVNIALG 183

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAY----WKK----ISRIVPKVIRSTFLGMTIIA 222
           +I   +   D     ++L S G+ +  AY    W      ++++  +   S F+G  I A
Sbjct: 184 LIFAIYMLLD----KERLMSQGKRILKAYASDTWVNRVTYVAKVAVQTFSSFFVGQFIDA 239

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF 282
           +  G+++G   W+  +     +  +  +  +IP         V IY+   G +  A  L 
Sbjct: 240 LILGIMVGVTLWICNISYATTIACVIGLTGLIP--------LVGIYV---GGLMGAVILL 288

Query: 283 LWGAIELFIV-----------DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
               ++  I               + P +VG  + LP L  F  ++ G   MG+ G+ IG
Sbjct: 289 TISPMDALIYVIILEVLHQIESNVIYPKIVGNSVGLPGLWVFAAVIIGGSLMGVTGMIIG 348

Query: 332 PVLMALIAVIWKESIMAIKENKEKISSN 359
              + L+A  +K   + + + +E+++SN
Sbjct: 349 ---VPLVATCYK---LLMTDVEERLASN 370


>gi|255531139|ref|YP_003091511.1| hypothetical protein Phep_1233 [Pedobacter heparinus DSM 2366]
 gi|255344123|gb|ACU03449.1| protein of unknown function UPF0118 [Pedobacter heparinus DSM 2366]
          Length = 370

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 9/147 (6%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           ++I  I+ K I   FL M I+ +    ++    W+  V   V LG+I+ I  ++P     
Sbjct: 194 RQIQYIIKKYITGLFLQMFIVTV----LMIFTLWVLNVKYAVLLGLISGIFNIVPYLGI- 248

Query: 261 SFTAVSIYLLIKGNIFNAT--CLFLWGAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGLV 317
            FTA+ I +LI      A    L L   + +  +D   L P +VG  +K+  L  F G+V
Sbjct: 249 -FTALLISVLITFATAGAAKVLLVLIAFVSIHALDGNVLMPLVVGSKVKINALFAFIGIV 307

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKE 344
            G    G+ G+F+    +A++ +I+ +
Sbjct: 308 VGEMIWGISGMFLCIPYLAMLKIIFDK 334


>gi|153841626|ref|ZP_01993425.1| membrane protein [Vibrio parahaemolyticus AQ3810]
 gi|149745457|gb|EDM56708.1| membrane protein [Vibrio parahaemolyticus AQ3810]
          Length = 144

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 5/144 (3%)

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGN 274
           +G  + AI +GL  G   WLAG P  +  G +    + IP  G  + +   + YL + G+
Sbjct: 1   MGSFLTAIAQGLAGGIGMWLAGFPG-LFWGTMMGFASFIPVVGTALIWIPAAAYLFLTGD 59

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
           +  A  L  W  + +  +D  LRP L+ G   +  L  FF L+GG+   GL+GL  GP++
Sbjct: 60  MTWAIFLTAWSVVIVGSIDNLLRPLLMQGSAGMNTLMIFFSLLGGLHLFGLIGLIYGPLI 119

Query: 335 MALIAV---IWKESIMAIKENKEK 355
            A+  V   I++E        ++ 
Sbjct: 120 FAVTMVLFNIYEEEFKDFLNQQDN 143


>gi|37521449|ref|NP_924826.1| hypothetical protein glr1880 [Gloeobacter violaceus PCC 7421]
 gi|35212446|dbj|BAC89821.1| glr1880 [Gloeobacter violaceus PCC 7421]
          Length = 351

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 91/200 (45%), Gaps = 15/200 (7%)

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK-KISRIVPKVIRSTFLGM 218
           FL   ++ I +++  FF   DG  I   L        PA  + + S+ V       F G 
Sbjct: 161 FLGSYVTFIVIVVVAFFMLADGGRIWGLLI----KFLPAAQRVRFSQSVQSNFAGFFQGQ 216

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFN 277
            +IA+  G      + L  +P  + L +  A+  +IPG GA +    V + +L++G+ + 
Sbjct: 217 LLIALFLGTASFVVFTLLQIPFALVLAITVALFDLIPGIGATLGVGLVCLTVLVQGD-WV 275

Query: 278 ATCLFLWGAIELFIV-DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLM 335
           AT       I L  V D  + P ++   + L  +  FF L+ G R  GL+G+F+  PV  
Sbjct: 276 ATLKLFAACIALQQVQDNFIAPRVMQSTVNLNPVIVFFALLVGARIGGLIGVFLAVPVAG 335

Query: 336 ALIAVIWKESIMAIKENKEK 355
            ++      S++ ++E + K
Sbjct: 336 VVV------SLLDVEEAQSK 349


>gi|311280807|ref|YP_003943038.1| hypothetical protein Entcl_3510 [Enterobacter cloacae SCF1]
 gi|308750002|gb|ADO49754.1| protein of unknown function UPF0118 [Enterobacter cloacae SCF1]
          Length = 369

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 19/143 (13%)

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-- 262
           ++    IR+   G+  +A+ + L+ G    LAG+P   A+G+   I+A+I G A I    
Sbjct: 213 KLCTSTIRAVAQGVIGVALIQALLAGVVMALAGIP---AVGIFF-ILALILGIAQIPVIL 268

Query: 263 -TAVSIYLL-------IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
            TA +I ++          NI     L + G     + D  L+P ++G  +  P      
Sbjct: 269 VTAPAIAIMWHMGDHGTGLNIIYTVLLLIAG-----MADNVLKPLMLGRGVDAPMPVVLL 323

Query: 315 GLVGGVRTMGLLGLFIGPVLMAL 337
           G +GG+   G+LG+FIG  L+++
Sbjct: 324 GALGGMAASGILGMFIGATLLSI 346


>gi|327472814|gb|EGF18241.1| permease [Streptococcus sanguinis SK408]
          Length = 365

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 104/244 (42%), Gaps = 20/244 (8%)

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           V +WL    G + +S+L  K L+     K L  + +    I  +         IF ++  
Sbjct: 117 VAKWLQQ-SGLLSSSQL--KDLT-----KQLQNSDIVNRAISLLGSLTGNISAIFGNF-F 167

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF----LGMTII 221
           S+I  I  +F F      +      L + L P    K    V  VI  T+    +G  I 
Sbjct: 168 SVIMSIFLMFAFLSSKEHLQTITSRLLQVLLPEKAVKRLSYVGSVIVETYDKFLMGQMIE 227

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA-TC 280
           A+  G+++  AY L G+P     GV+  +++ IP   P S  A+    +   + + A   
Sbjct: 228 AVIVGILVFIAYSLTGLPYAALTGVLAGVLSFIPYIGPFSACALGAIFIFTDSPWKALLS 287

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL-FIGPVLMALIA 339
           + ++  ++L I    + P +VG  + LP L T    + G    GL+G+ F  P+     A
Sbjct: 288 IAVFQGVQL-IEGNVIYPRVVGQSVGLPTLFTLAAALIGGNLFGLVGMIFFTPIF----A 342

Query: 340 VIWK 343
           VI++
Sbjct: 343 VIYR 346


>gi|320352586|ref|YP_004193925.1| hypothetical protein Despr_0453 [Desulfobulbus propionicus DSM
           2032]
 gi|320121088|gb|ADW16634.1| protein of unknown function UPF0118 [Desulfobulbus propionicus DSM
           2032]
          Length = 360

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 91/202 (45%), Gaps = 11/202 (5%)

Query: 160 FLDYCLSIIFMIIALFFFYR-DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
           F D+C+ I+ +   L  ++R   F +  +L  L E        K S I   ++    +G 
Sbjct: 163 FFDFCILIVCIYFLLIEYHRLTAFLL--KLSPLPEAQNRLLIDKFSSIAGTIL----IGN 216

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN 277
            +  + +G++ G  +   G+ S V  GV+  ++A +P  G  +     ++   +KG  + 
Sbjct: 217 GLSGLIQGVLGGIFFAAMGLVSPVLWGVVMGVLAFLPILGVGLVLLPTTLIFFLKGKFWQ 276

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           A    ++       ++   +P  VG   +LP +     ++GG+   G+LG+  GP  +A+
Sbjct: 277 AVVTLVFYLFLTVFIEYMFKPKFVGAQAQLPPILVLLSIIGGMSISGVLGIIYGP--LAV 334

Query: 338 IAVIWKESIMAIKENKEKISSN 359
            A +   S M ++E +  + S 
Sbjct: 335 TAFL-TLSDMYVREYQPYLDSR 355


>gi|195978343|ref|YP_002123587.1| hypothetical protein Sez_1234 [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195975048|gb|ACG62574.1| hypothetical protein Sez_1234 [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 393

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 102/232 (43%), Gaps = 15/232 (6%)

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
           + S L     S  Q     +++F K N ID+   FA     I     ++II     LF+F
Sbjct: 145 YRSNLQDMLTSMSQKALDYAQSFSK-NAIDWAGNFAGAIARI----TVAIIMSPFILFYF 199

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKK-ISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAY 233
            RD   +   L     ++ P   ++ ++R+   + K +     G   +AI  GL+    +
Sbjct: 200 LRDSGHMKNGL----VNVLPIKLRQPMARVLGEINKQLSGYVQGQVTVAIVVGLMFSVMF 255

Query: 234 WLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            L G+   +  G+I   + MIP  G+ ++   V I  +++G +     L ++  IE  I 
Sbjct: 256 SLVGLNYSITFGIIAGFLNMIPYLGSFLAMIPVVIMGMVQGPLMLIKVLIIF-VIEQTIE 314

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            + + P ++G  + +  +   F L+      G+ G+F+   + A + V+ KE
Sbjct: 315 GRFVAPLVLGNKLSIHPITIMFLLLTAGSMFGVWGVFLVIPVYASVKVVVKE 366


>gi|327459398|gb|EGF05744.1| permease [Streptococcus sanguinis SK1]
          Length = 365

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 104/244 (42%), Gaps = 20/244 (8%)

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           V +WL    G + +S+L  K L+     K L  + +    I  +         IF ++  
Sbjct: 117 VAKWLQQ-SGLLSSSQL--KDLT-----KQLQNSDIVNRAISLLGSLTGNISAIFGNF-F 167

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF----LGMTII 221
           S+I  I  +F F      +      L + L P    K    V  VI  T+    +G  I 
Sbjct: 168 SVIMSIFLMFAFLSSKEHLQTITSRLLQVLLPEKAVKRLSYVGSVIVETYDKFLMGQMIE 227

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA-TC 280
           A+  G+++  AY L G+P     GV+  +++ IP   P S  A+    +   + + A   
Sbjct: 228 AVIVGILVFIAYSLTGLPYAALTGVLAGVLSFIPYIGPFSACALGAIFIFTDSPWKALLS 287

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL-FIGPVLMALIA 339
           + ++  ++L I    + P +VG  + LP L T    + G    GL+G+ F  P+     A
Sbjct: 288 IAVFQGVQL-IEGNVIYPRVVGQSVGLPTLFTLAAALIGGNLFGLVGMIFFTPIF----A 342

Query: 340 VIWK 343
           VI++
Sbjct: 343 VIYR 346


>gi|297544522|ref|YP_003676824.1| protein of unknown function UPF0118 [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842297|gb|ADH60813.1| protein of unknown function UPF0118 [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 341

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 140/335 (41%), Gaps = 44/335 (13%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +K   +P   A ++ +   P+   F SK    STF +++    ++ L I  L+F FY   
Sbjct: 29  IKNILSPFFIAGLVAYLLNPMVKFFNSKG--LSTFFSILLVFLIVTLGI--LIFSFYIFP 84

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH--PQSLKILSETFLKTN 144
           L + E+++ + +       +P ++ ++   +   +L   + S+  PQ  K+L +     N
Sbjct: 85  LMINEMIAFITM-------IPFYIEELQNILI--QLKFNYFSYLPPQFEKVLDKNLNTLN 135

Query: 145 GIDFIPRFASRFGMIF------LDYCLSIIFMIIALFFFYRDGFSISQQLD----SLGEH 194
            +     FASR  M F      L   +  I + I  F+F +D     ++++    S    
Sbjct: 136 NL-----FASRVDMAFKSTVAILKNVIDAILVPIITFYFLKDKNLFKKEIEKIIPSKYHS 190

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F    +KI +I+ K IR+       ++I  G++      L  +     +G++T ++ +I
Sbjct: 191 SFFTLLRKIDKILSKYIRAQ----IYLSIFVGILTSIGLSLIKIKYAFLVGLLTGVLNII 246

Query: 255 PGGAPISFTAVSIYL-----LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           P   PI     ++ L     L KG      CL +      FI  K L   +   PI    
Sbjct: 247 PYIGPILSIIPAVLLGFLDSLSKGIWALVVCLLVQQIENAFITPKILSDSVGLHPIT--- 303

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
               F L+ G    G+ GL +   ++A++  +  E
Sbjct: 304 --VIFSLIAGGELFGIWGLLLSVPIVAIVKAVVTE 336


>gi|225870739|ref|YP_002746686.1| membrane protein [Streptococcus equi subsp. equi 4047]
 gi|225700143|emb|CAW94274.1| putative membrane protein [Streptococcus equi subsp. equi 4047]
          Length = 393

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 102/232 (43%), Gaps = 15/232 (6%)

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
           + S L     S  Q     +++F K N ID+   FA     I     ++II     LF+F
Sbjct: 145 YRSNLQDMLTSMSQKALDYAQSFSK-NAIDWAGNFAGAIARI----TVAIIMSPFILFYF 199

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKK-ISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAY 233
            RD   +   L     ++ P   ++ ++R+   + K +     G   +AI  GL+    +
Sbjct: 200 LRDSGHMKNGL----VNVLPIKLRQPMARVLGEINKQLSGYVQGQVTVAIVVGLMFSVMF 255

Query: 234 WLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            L G+   +  G+I   + MIP  G+ ++   V I  +++G +     L ++  IE  I 
Sbjct: 256 SLVGLNYSITFGIIAGFLNMIPYLGSFLAMIPVVIMGMVQGPLMLIKVLIIF-VIEQTIE 314

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            + + P ++G  + +  +   F L+      G+ G+F+   + A + V+ KE
Sbjct: 315 GRFVAPLVLGNKLSIHPITIMFLLLTAGSMFGVWGVFLVIPVYASVKVVVKE 366


>gi|300864368|ref|ZP_07109241.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300337643|emb|CBN54387.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 345

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 98/218 (44%), Gaps = 16/218 (7%)

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ-QLDS 190
           +L+++ E  L+T  +  I    +    +F +  ++ IF+    FF   DG  + Q  L+ 
Sbjct: 131 NLRVIEEQ-LRTQALGGIVSSITLLQTVFTN-VITFIFITAVSFFMLLDGERLWQLMLNF 188

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L +HL   + + I R         FLG     I   L L +A ++  +  +V   +I A+
Sbjct: 189 LPKHLHRRFARTIER--------NFLGFFQAQIILMLFLVTASFIVLLILNVRFALILAV 240

Query: 251 M----AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +     +IPG       A+  ++++  N + A  + +   I   I D  + P ++   + 
Sbjct: 241 ILGAFDLIPGIGATLGIALVFFIVLAQNYWLAFKVLIACIILQQIQDNIIHPRIMKNSLN 300

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L  +  FF L+ G R  GLLG+F+   L  +I V W E
Sbjct: 301 LNPVVVFFALLVGARAAGLLGIFLAIPLAGVI-VSWFE 337


>gi|315282307|ref|ZP_07870742.1| membrane protein YdbI [Listeria marthii FSL S4-120]
 gi|313614043|gb|EFR87752.1| membrane protein YdbI [Listeria marthii FSL S4-120]
          Length = 345

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 30/163 (18%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
           KVI + F    IIA+    +   A W+ G P  + L ++  ++ +IP  G  IS   ++I
Sbjct: 197 KVIEAQF----IIALVNAFLTTIALWILGFPQLMTLSIMVFLLGLIPVAGVIISLIPLTI 252

Query: 268 ------------YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                       Y+LI         + +  A+E ++    L P L+     LP   TF  
Sbjct: 253 IGYSIGGVEYIFYILI--------VVIIIHALESYV----LNPKLMSAKTNLPVFYTFII 300

Query: 316 LVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKEKIS 357
           L+ G    G+ GL +G PV+M  + V+   +   I++ K+ IS
Sbjct: 301 LIFGEHFFGIWGLIVGIPVVMFFLDVLGVTNQEEIEQPKDTIS 343


>gi|257792294|ref|YP_003182900.1| hypothetical protein Elen_2556 [Eggerthella lenta DSM 2243]
 gi|317490215|ref|ZP_07948703.1| hypothetical protein HMPREF1023_02403 [Eggerthella sp. 1_3_56FAA]
 gi|257476191|gb|ACV56511.1| protein of unknown function UPF0118 [Eggerthella lenta DSM 2243]
 gi|316910709|gb|EFV32330.1| hypothetical protein HMPREF1023_02403 [Eggerthella sp. 1_3_56FAA]
          Length = 429

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 77/165 (46%), Gaps = 24/165 (14%)

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           +P ++  I G  W ++L+T++    Q+  +  +T++  N +D I  +AS F     +  +
Sbjct: 112 IPGYVQTIAG--WGNDLYTRYADVLQNDTV--QTWIN-NALDAIVSWASTFARDSANGVV 166

Query: 166 SI----IFMIIALFFFYRDGFSISQQLDSLGEHLF----PAYWKKI-------SRIVPKV 210
           +I    +   +AL F     F I  +L  LG        P   + +       +R++   
Sbjct: 167 AIGTGLVNTFVALGFALVVAFWILMELPQLGRECMRLVNPKRHEDLEMLHVTFTRVMGGY 226

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           I+ T L   II +G  ++ G+     G+P++ ALG I  ++ +IP
Sbjct: 227 IKGTLLQCAIIGVGCVVLFGAI----GIPNYAALGGIAGLLNIIP 267


>gi|329120004|ref|ZP_08248676.1| permease [Neisseria bacilliformis ATCC BAA-1200]
 gi|327463917|gb|EGF10231.1| permease [Neisseria bacilliformis ATCC BAA-1200]
          Length = 356

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 8/169 (4%)

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           S  + +L    F   + +ISR +  V+     G  ++ +  GLV G+   L G+ S  A+
Sbjct: 181 SHGIRALIPRRFIDTYTRISREMDDVLGEFLRGQLMVMLIMGLVYGTGLMLTGLDSGFAI 240

Query: 245 GVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNA--TCLFLWG--AIELFIVDKTLRPF 299
           G+I  I+  +P  GA   FT + +  +     FN+    + +W   A+  F+    + P 
Sbjct: 241 GMIAGILVFVPYLGA---FTGLLLATVAALLQFNSWHGMVAVWSVFAVGQFLESFFITPK 297

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           +VG  I L      F L+   + MG +G+ +G  L A+  V+ +E   A
Sbjct: 298 IVGDRIGLSPFWVIFSLMAFGQLMGFVGMLVGLPLAAVCLVLLREGSQA 346


>gi|325833632|ref|ZP_08166081.1| putative membrane protein [Eggerthella sp. HGA1]
 gi|325485556|gb|EGC88025.1| putative membrane protein [Eggerthella sp. HGA1]
          Length = 429

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 77/165 (46%), Gaps = 24/165 (14%)

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           +P ++  I G  W ++L+T++    Q+  +  +T++  N +D I  +AS F     +  +
Sbjct: 112 IPGYVQTIAG--WGNDLYTRYADVLQNDTV--QTWIN-NALDAIVSWASTFARDSANGVV 166

Query: 166 SI----IFMIIALFFFYRDGFSISQQLDSLGEHLF----PAYWKKI-------SRIVPKV 210
           +I    +   +AL F     F I  +L  LG        P   + +       +R++   
Sbjct: 167 AIGTGLVNTFVALGFALVVAFWILMELPQLGRECMRLVNPKRHEDLEMLHVTFTRVMGGY 226

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           I+ T L   II +G  ++ G+     G+P++ ALG I  ++ +IP
Sbjct: 227 IKGTLLQCAIIGVGCVVLFGAI----GIPNYAALGGIAGLLNIIP 267


>gi|76801595|ref|YP_326603.1| permease [Natronomonas pharaonis DSM 2160]
 gi|76557460|emb|CAI49038.1| predicted transporter (predicted permease) [Natronomonas pharaonis
           DSM 2160]
          Length = 414

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           VS+YL +      A  L ++G++ + + D   RP L+G    L       G+ GG+   G
Sbjct: 257 VSVYLAVADRPTAAALLVVYGSL-VSLSDNYFRPALIGRSGALNPAIIVVGIFGGIVAFG 315

Query: 325 LLGLFIGPVLM 335
            +GLFIGPV++
Sbjct: 316 AVGLFIGPVVL 326


>gi|16331485|ref|NP_442213.1| hypothetical protein sll0063 [Synechocystis sp. PCC 6803]
 gi|8928467|sp|Q55147|Y063_SYNY3 RecName: Full=UPF0118 membrane protein sll0063
 gi|1001141|dbj|BAA10283.1| sll0063 [Synechocystis sp. PCC 6803]
          Length = 395

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 5/155 (3%)

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           + K  S  + +  ++ FLG  + A    L L S + L  VP  +  G+   +MA+IP G 
Sbjct: 218 FQKPFSDTLRRSFQNYFLGQLVSATCMALGLISGFLLLKVPFGLLFGLTVGVMALIPFGG 277

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            +    V+ +L+   +I  A  L     +   IV+  + P ++G    L        L+ 
Sbjct: 278 SVGIVLVT-FLVALRDIGMALQLLAVALVIQQIVENGIAPRVLGSVTGLNPFWVLISLLT 336

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G R  GLLG+ +        AV+ KE++ AI+  K
Sbjct: 337 GARIGGLLGVIVA----VPSAVMIKEALGAIRSMK 367


>gi|329667697|gb|AEB93645.1| permease [Lactobacillus johnsonii DPC 6026]
          Length = 393

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 83/185 (44%), Gaps = 9/185 (4%)

Query: 164 CLSIIFMII-----ALFFFYRDGFSISQQLDSLG-EHLFPAYWKKISRIVPKVIRSTFLG 217
            +++IFM +      LFF  +DG  ++  +     + L P++   +S I    + S   G
Sbjct: 181 VITMIFMTLLTAPFVLFFMLKDGHRLNPYVTKFAPKKLQPSFSSLLSDI-NGAVASYIRG 239

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIF 276
              +A   G++    Y + G+   + L V+  I+ MIP  G  I+F    I  LI   + 
Sbjct: 240 QITVAFWVGVMFAIGYSVIGLNYGITLAVLAGILNMIPYFGTFIAFIPAIILGLISSPMM 299

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
               L ++ AIE  +  + + P ++G  + +  + T   L+G     GL G+     + A
Sbjct: 300 LIKVLIVF-AIEQTLEGRVISPLVMGNKMNMNPVTTILLLIGASAVAGLWGVIFAIPVYA 358

Query: 337 LIAVI 341
           +I +I
Sbjct: 359 VIKII 363


>gi|295695749|ref|YP_003588987.1| protein of unknown function UPF0118 [Bacillus tusciae DSM 2912]
 gi|295411351|gb|ADG05843.1| protein of unknown function UPF0118 [Bacillus tusciae DSM 2912]
          Length = 355

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 68/323 (21%), Positives = 136/323 (42%), Gaps = 33/323 (10%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P + ALII +   P+  + + ++        V   +S++ ++ + LL      +  +  L
Sbjct: 46  PFVVALIISYLLNPVVEALVKRR--------VPRGISILIIYAIFLLISAVAAVQGIPAL 97

Query: 93  VSKV--VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           V +V  + AN     +P  +  I    W +EL  +    P  ++   E     N ++ + 
Sbjct: 98  VEQVKALAAN-----LPETVHRI--DQWLNELARQTRYLPDGIQQAVE-----NHLNQLE 145

Query: 151 RFASRF-GMIF------LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           R+A +F G +       +   LS   +   +F+  +D   + + + SL       +WKK+
Sbjct: 146 RWAGQFLGQVVASLGATVGQVLSAFVVPFLVFYLLKDLKMVERVVLSLAPREQRDFWKKL 205

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
            + +   +     G  ++    G++  + Y + G+P  + +  I A+  +IP   P  F 
Sbjct: 206 LQEIDDALGRYVRGQLLVMALVGVLTYAGYLIIGLPFSLLMASIVAVANIIPYVGP--FI 263

Query: 264 AVSIYLLIKGNIFNATCL--FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
            ++   LI   I  A  L   L   I   I    + P +VG  + +  L   F L+ G +
Sbjct: 264 GLAPAALIGLTISPAMALKVLLVNLIVQQIESNFISPAVVGRSLDIHPLAIIFALLLGGQ 323

Query: 322 TMGLLGLFIGPVLMALIAVIWKE 344
             G+ G+     ++A++ VIW+ 
Sbjct: 324 LAGIAGMVFAVPVLAVLRVIWQH 346


>gi|254478928|ref|ZP_05092290.1| sporulation integral membrane protein YtvI [Carboxydibrachium
           pacificum DSM 12653]
 gi|214035150|gb|EEB75862.1| sporulation integral membrane protein YtvI [Carboxydibrachium
           pacificum DSM 12653]
          Length = 349

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 102/235 (43%), Gaps = 20/235 (8%)

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI-------IFMIIALFFFY 178
           ++S P ++  L E+ +++  ++++  FA       L++   +       +  ++A FF  
Sbjct: 118 YISLPPNITSLIESNMQS-ILNYVSLFAKNLATWLLNFATKLPNFFFMTLITLVATFFIS 176

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG----MTIIAIGEGLVLGSAYW 234
           +D     Q +    +   P++W + ++ +   +  TF G    +  I +   L +     
Sbjct: 177 KD----KQLILDFIKRQIPSHWAQHAKNIQVDLLKTFFGYLRAVATIMLITFLEVSIGLA 232

Query: 235 LAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           + G      LG++  I+  +P  G   +        +++K  +     L L+G +   +V
Sbjct: 233 IIGFDYPFLLGLLVTIVDALPVLGSGAVMVPWALYNIIMKNYMVGIYLLILYGLV--VVV 290

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            + + P +VG  I L  L T   +  GV+  G +GL IGPV + +   + K  I+
Sbjct: 291 RQMIEPKIVGQSIGLHPLVTLLSMFIGVKLFGAIGLVIGPVFVVVFKALQKAEII 345


>gi|52549442|gb|AAU83291.1| Htr-like protein [uncultured archaeon GZfos27E6]
          Length = 367

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 72/366 (19%), Positives = 138/366 (37%), Gaps = 58/366 (15%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSL--YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES 58
           +RE   N    + W I+ +I ++L  Y L  F   ++  + I + + P+YS F  ++ + 
Sbjct: 3   LREKTRNK---LYWQILGLISIALLAYMLFPFLDVLIYGIFIYYVARPMYSKF-DRRVKH 58

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV----------VLANQHGIPVPR 108
            +  A I+   V+   ++  +F      +E+   +S+V          +  N  GI    
Sbjct: 59  KSVGAFISLFFVVLPIVLISIFTLSIAYIELSTFLSQVDFGHMGYVNELFKNFEGIAANI 118

Query: 109 WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII 168
              DI   +   + W   L+    +   S+ F K                 F+D    + 
Sbjct: 119 KQGDISTLISQGDTWVLILTQ---ITKFSDIFFK-----------------FIDVLFRLF 158

Query: 169 FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLV 228
                 F+   D   + + +        P   KK    V   I + + G  + A+   L+
Sbjct: 159 LTFAIAFYLLTDATKLREWITDTFLGGKPELTKKFFDEVDSDIHTVYFGNILTAVLTALI 218

Query: 229 LGSAYWLAG--------VPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNAT 279
               +WL          +P  + + ++  +   IP  G  + +  ++IYL+I+  + N  
Sbjct: 219 AAVIFWLLNLVAPPQLLIPYPILMAILCGLGIFIPLVGMKLVWVPLAIYLVIQAYL-NGI 277

Query: 280 CLFLWGAIEL----------FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
               W  I L          F  D  LRP++ G  +        F  + G+   G +GLF
Sbjct: 278 LFTDWWFILLFLVVVFVVVDFAPDIALRPYISGKHVHAG--TMLFAYIFGIAVFGFVGLF 335

Query: 330 IGPVLM 335
           +GP+++
Sbjct: 336 LGPMIL 341


>gi|20806564|ref|NP_621735.1| permease [Thermoanaerobacter tengcongensis MB4]
 gi|20515003|gb|AAM23339.1| predicted permease [Thermoanaerobacter tengcongensis MB4]
          Length = 354

 Score = 37.7 bits (86), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 102/235 (43%), Gaps = 20/235 (8%)

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI-------IFMIIALFFFY 178
           ++S P ++  L E+ +++  ++++  FA       L++   +       +  ++A FF  
Sbjct: 123 YISLPPNITSLIESNMQS-ILNYVSLFAKNLATWLLNFATKLPNFFFMTLITLVATFFIS 181

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG----MTIIAIGEGLVLGSAYW 234
           +D     Q +    +   P++W + ++ +   +  TF G    +  I +   L +     
Sbjct: 182 KD----KQLILDFIKRQIPSHWAQHAKNIQVDLLKTFFGYLRAVATIMLITFLEVSIGLA 237

Query: 235 LAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           + G      LG++  I+  +P  G   +        +++K  +     L L+G +   +V
Sbjct: 238 IIGFDYPFLLGLLVTIVDALPVLGSGAVMVPWALYNIIMKNYMVGIYLLILYGLV--VVV 295

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            + + P +VG  I L  L T   +  GV+  G +GL IGPV + +   + K  I+
Sbjct: 296 RQMIEPKIVGQSIGLHPLVTLLSMFIGVKLFGAIGLVIGPVFVVVFKALQKAEII 350


>gi|253752195|ref|YP_003025336.1| hypothetical protein SSUSC84_1344 [Streptococcus suis SC84]
 gi|253754021|ref|YP_003027162.1| membrane protein [Streptococcus suis P1/7]
 gi|253755955|ref|YP_003029095.1| membrane protein [Streptococcus suis BM407]
 gi|251816484|emb|CAZ52120.1| putative membrane protein [Streptococcus suis SC84]
 gi|251818419|emb|CAZ56248.1| putative membrane protein [Streptococcus suis BM407]
 gi|251820267|emb|CAR46734.1| putative membrane protein [Streptococcus suis P1/7]
 gi|319758582|gb|ADV70524.1| hypothetical protein SSUJS14_1464 [Streptococcus suis JS14]
          Length = 388

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 103/233 (44%), Gaps = 27/233 (11%)

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC-----------LSIIFMIIALFFF 177
            P +L++L+    K N  D I  +A +F    +++            ++I+ M   LF+ 
Sbjct: 145 RPTALEMLN----KVN--DQIVAYAQKFSSSAVNWASNLISTASQIIVAILIMPFILFYL 198

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKK-ISRIVPKV---IRSTFLGMTIIAIGEGLVLGSAY 233
            RDG    Q L+       P  W++ I  ++  V   + +   G   +AI   L+    +
Sbjct: 199 LRDG----QYLNKHITQYLPTKWREPIGTVLSDVNGQLSNYVRGQVTVAIIVALMFSVMF 254

Query: 234 WLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            + G+   + LGV+   + +IP  G+ ++     I  LI G I     L ++  IE  I 
Sbjct: 255 SIIGLSYPITLGVMAGFLNLIPYLGSFLAMIPAVILGLIAGPIMLIKVLVVF-MIEQTIE 313

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            + + P ++G  + +  +   F L+   +  G+LG+ +G  + A I V+ K +
Sbjct: 314 GRFVTPLIIGSSLSIHPITILFVLLTAGQMYGVLGVLLGIPIYASIKVLVKAA 366


>gi|313623797|gb|EFR93928.1| membrane protein YdbI [Listeria innocua FSL J1-023]
          Length = 345

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 14/155 (9%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
           KVI + F    IIA+   ++   A W+ G P  + L ++  ++ +IP  G  IS   ++I
Sbjct: 197 KVIEAQF----IIALVNAVLTTIALWILGFPQLMTLSIMVFLLGLIPVAGVIISLIPLTI 252

Query: 268 YLLIKGNI----FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
                G +    +    + +  A+E ++    L P L+     LP   TF  L+ G    
Sbjct: 253 IGYSIGGVEYIFYILVVVIIIHALESYV----LNPKLMSAKTNLPVFYTFIILIFGEHFF 308

Query: 324 GLLGLFIG-PVLMALIAVIWKESIMAIKENKEKIS 357
           G+ GL +G PV+M  + V+   +   + + K+ IS
Sbjct: 309 GIWGLIVGIPVVMFFLDVLGVTNQEEVNQPKDTIS 343


>gi|146319150|ref|YP_001198862.1| permease [Streptococcus suis 05ZYH33]
 gi|145689956|gb|ABP90462.1| Predicted permease [Streptococcus suis 05ZYH33]
          Length = 391

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 103/233 (44%), Gaps = 27/233 (11%)

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC-----------LSIIFMIIALFFF 177
            P +L++L+    K N  D I  +A +F    +++            ++I+ M   LF+ 
Sbjct: 148 RPTALEMLN----KVN--DQIVAYAQKFSSSAVNWASNLISTASQIIVAILIMPFILFYL 201

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKK-ISRIVPKV---IRSTFLGMTIIAIGEGLVLGSAY 233
            RDG    Q L+       P  W++ I  ++  V   + +   G   +AI   L+    +
Sbjct: 202 LRDG----QYLNKHITQYLPTKWREPIGTVLSDVNGQLSNYVRGQVTVAIIVALMFSVMF 257

Query: 234 WLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            + G+   + LGV+   + +IP  G+ ++     I  LI G I     L ++  IE  I 
Sbjct: 258 SIIGLSYPITLGVMAGFLNLIPYLGSFLAMIPAVILGLIAGPIMLIKVLVVF-MIEQTIE 316

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            + + P ++G  + +  +   F L+   +  G+LG+ +G  + A I V+ K +
Sbjct: 317 GRFVTPLIIGSSLSIHPITILFVLLTAGQMYGVLGVLLGIPIYASIKVLVKAA 369


>gi|223932565|ref|ZP_03624566.1| protein of unknown function UPF0118 [Streptococcus suis 89/1591]
 gi|302024193|ref|ZP_07249404.1| membrane protein [Streptococcus suis 05HAS68]
 gi|330833141|ref|YP_004401966.1| hypothetical protein SSUST3_1355 [Streptococcus suis ST3]
 gi|223898836|gb|EEF65196.1| protein of unknown function UPF0118 [Streptococcus suis 89/1591]
 gi|329307364|gb|AEB81780.1| protein of unknown function UPF0118 [Streptococcus suis ST3]
          Length = 388

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 103/233 (44%), Gaps = 27/233 (11%)

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC-----------LSIIFMIIALFFF 177
            P +L++L+    K N  D I  +A +F    +++            ++I+ M   LF+ 
Sbjct: 145 RPTALEMLN----KVN--DQIVAYAQKFSSSAVNWASNLISTASQIIVAILIMPFILFYL 198

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKK-ISRIVPKV---IRSTFLGMTIIAIGEGLVLGSAY 233
            RDG    Q L+       P  W++ I  ++  V   + +   G   +AI   L+    +
Sbjct: 199 LRDG----QYLNKHITQYLPTKWREPIGTVLSDVNGQLSNYVRGQVTVAIIVALMFSVMF 254

Query: 234 WLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            + G+   + LGV+   + +IP  G+ ++     I  LI G I     L ++  IE  I 
Sbjct: 255 SIIGLSYPITLGVMAGFLNLIPYLGSFLAMIPAVILGLIAGPIMLIKVLVVF-MIEQTIE 313

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            + + P ++G  + +  +   F L+   +  G+LG+ +G  + A I V+ K +
Sbjct: 314 GRFVTPLIIGSSLSIHPITILFVLLTAGQMYGVLGVLLGIPIYASIKVLVKAA 366


>gi|325684459|gb|EGD26623.1| permease [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 396

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 2/169 (1%)

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           LFF  +DG  +   L       +     K+   V + + S  +G   +AI  G++L   Y
Sbjct: 192 LFFMLKDGHKLRPFLVKFAPQRWEQATSKLLHEVNQAVSSYVIGQVSVAICVGIMLFIGY 251

Query: 234 WLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            + G P   AL + +  + +IP  G  I      I  L+      A  L ++  IE  I 
Sbjct: 252 TIIGEPYGAALAICSGFLNLIPYFGTFIGLIPALIIALVTDLSMVAKVLVVF-FIEQIIE 310

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            + + P +VG  +K+    T   ++G     GL G+  G  + A++ ++
Sbjct: 311 TRVISPLVVGNRLKMHPATTIIVMLGAGSVWGLWGVIGGIPIYAVMKIL 359


>gi|16800526|ref|NP_470794.1| hypothetical protein lin1458 [Listeria innocua Clip11262]
 gi|16413931|emb|CAC96689.1| lin1458 [Listeria innocua Clip11262]
          Length = 345

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 14/155 (9%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
           KVI + F    IIA+   ++   A W+ G P  + L ++  ++ +IP  G  IS   ++I
Sbjct: 197 KVIEAQF----IIALVNAVLTTIALWILGFPQLMTLSIMVFLLGLIPVAGVIISLIPLTI 252

Query: 268 YLLIKGNI----FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
                G +    +    + +  A+E ++    L P L+     LP   TF  L+ G    
Sbjct: 253 IGYSIGGVEYIFYILVVVIIIHALESYV----LNPKLMSAKTNLPVFYTFIILIFGEHFF 308

Query: 324 GLLGLFIG-PVLMALIAVIWKESIMAIKENKEKIS 357
           G+ GL +G PV+M  + V+   +   + + K+ IS
Sbjct: 309 GIWGLIVGIPVVMFFLDVLGVTNQEEVNQPKDTIS 343


>gi|329117036|ref|ZP_08245753.1| putative membrane protein [Streptococcus parauberis NCFD 2020]
 gi|326907441|gb|EGE54355.1| putative membrane protein [Streptococcus parauberis NCFD 2020]
          Length = 393

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 8/175 (4%)

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLG 230
           LF+F RD     +  D + E L     K I+R+   + K +     G   +AI  G++  
Sbjct: 196 LFYFLRDS---GKMKDGIVETLPTRLRKPIARVLGDINKQLSGYVQGQVTVAIIVGIMFS 252

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
             + + G+   V  G++   + M+P  G+ ++   V I  L++G +     L ++  IE 
Sbjct: 253 IMFSIVGLKYSVTFGIVAGFLNMVPYLGSFLAMIPVVIMSLVQGPLMLVKVLIVF-TIEQ 311

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            I  + + P ++G  + +  +   F L+      G+ G+F+   + A + V+ KE
Sbjct: 312 TIEGRFVTPLVLGNKLSIHPITIMFLLLTAGAMFGVWGVFLVIPIYASVKVVVKE 366


>gi|257387204|ref|YP_003176977.1| hypothetical protein Hmuk_1144 [Halomicrobium mukohataei DSM 12286]
 gi|257169511|gb|ACV47270.1| protein of unknown function UPF0118 [Halomicrobium mukohataei DSM
           12286]
          Length = 341

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 76/169 (44%), Gaps = 10/169 (5%)

Query: 197 PAYWKKISRIVPKVIRSTFLGMTII----AIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           P  ++ + R + +  R+T   + ++    A+G  L+    +   G P    L  +  I+ 
Sbjct: 170 PEEYQSLVRTMHERTRNTLYAIYVLQGATALGTFLIAYLVFAGLGYPGAFGLAAVAGILQ 229

Query: 253 MIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLVGGPIKLPFL 310
            +P   P I    V+   ++ G++  A  L + G + + F+ D  +RP L      +P  
Sbjct: 230 FVPVVGPSILIAVVAATDVVAGDLTGAATLLVIGLVFVGFLPDAIIRPQLAPYTADIPAS 289

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             F G  GGV ++G++G   GP+++AL    + E++  +   +  +   
Sbjct: 290 LYFIGFTGGVLSIGIVGFIAGPLVVAL----FVEAVELLTNERPTVQRQ 334


>gi|167036456|ref|YP_001664034.1| hypothetical protein Teth39_0025 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|166855290|gb|ABY93698.1| protein of unknown function UPF0118 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
          Length = 392

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 48/241 (19%), Positives = 102/241 (42%), Gaps = 32/241 (13%)

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI-------IFMIIALFFFY 178
           ++S P ++  L E+ +++  ++++  FA       L++   +       +  ++A FF  
Sbjct: 161 YISLPPNITSLIESNMQS-ILNYVSLFAKNLATWLLNFATKLPNFFFMTLITLVATFFIS 219

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG----------MTIIAIGEGLV 228
           +D     Q +    +   P++W + ++ +   +  TF G          +T + +  GL 
Sbjct: 220 KD----KQLILDFIKRQIPSHWAQHAKSIQVNLLKTFFGYLRAVATIMLITFLEVSIGLA 275

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           +       G      LG++  I+  +P  G   +        +++K  +     L L+G 
Sbjct: 276 M------IGFDYPFLLGLLVTIVDALPVLGSGAVMVPWALYNIIMKNYMVGIYLLILYGL 329

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           +   +V + + P +VG  I L  L T   +  G +  G LGL IGPV + +   + +  I
Sbjct: 330 V--VVVRQIIEPKIVGQSIGLHPLVTLLSMFIGAKLFGALGLIIGPVFVVVFKALQRAEI 387

Query: 347 M 347
           +
Sbjct: 388 I 388


>gi|116492928|ref|YP_804663.1| permease [Pediococcus pentosaceus ATCC 25745]
 gi|116103078|gb|ABJ68221.1| Predicted permease [Pediococcus pentosaceus ATCC 25745]
          Length = 350

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 1/99 (1%)

Query: 234 WLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           W+ GVP  + + +I  ++ ++P  G  IS   +SI       I +   +     +  F  
Sbjct: 220 WIIGVPKLLLMAIIVFVLGLVPVAGVLISLIPLSIVAFSANGIISIAEVLCLVILIHFFE 279

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
              L P L+ G   LP   TF  L+ G + +G  GL +G
Sbjct: 280 SYFLHPRLMAGATDLPVFVTFITLIIGAKMLGTWGLIVG 318


>gi|16079795|ref|NP_390619.1| permease [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310678|ref|ZP_03592525.1| hypothetical protein Bsubs1_14976 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315001|ref|ZP_03596806.1| hypothetical protein BsubsN3_14892 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319922|ref|ZP_03601216.1| hypothetical protein BsubsJ_14803 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324203|ref|ZP_03605497.1| hypothetical protein BsubsS_14947 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321312267|ref|YP_004204554.1| putative permease [Bacillus subtilis BSn5]
 gi|8928489|sp|O34472|YRRI_BACSU RecName: Full=UPF0118 membrane protein yrrI
 gi|2635187|emb|CAB14683.1| putative permease [Bacillus subtilis subsp. subtilis str. 168]
 gi|320018541|gb|ADV93527.1| putative permease [Bacillus subtilis BSn5]
          Length = 353

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 67/148 (45%), Gaps = 16/148 (10%)

Query: 194 HLFPAYWKKIS----RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +L P  W+K      R V   +     G  ++ +  G++ G ++W+ G+P  + LG+I+ 
Sbjct: 191 YLTPKSWRKRGSAFLRDVDDSLGDYIRGQLLVCLILGVIAGISFWVFGLPYPLILGLISG 250

Query: 250 IMAMIP------GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           +  +IP      G  P    A++I   +K  +     +F    I  F+    L PF+VG 
Sbjct: 251 VTNVIPYFGPFIGAVPALLIAMTIS--VKAVLVVVITVF----ILQFMEGNILSPFIVGR 304

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
            +K+  +     L+ G    G++G+ + 
Sbjct: 305 SLKMHPVVIMLALLAGGELAGIVGMILA 332


>gi|282165362|ref|YP_003357747.1| hypothetical protein MCP_2692 [Methanocella paludicola SANAE]
 gi|282157676|dbj|BAI62764.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 380

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 111/286 (38%), Gaps = 44/286 (15%)

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
           S VV   Q    +   +S   G +   +L+     +  S+  L +  + T          
Sbjct: 110 SNVVSEIQRNFTMENIMSGNFGAIVPQDLYEALQGYGSSIANLQQLVIST---------- 159

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA-----------YWKK 202
              G   +D    +  +I+ +F+  R+     ++L S  +  FP+           Y + 
Sbjct: 160 ---GSTIVDIIFKLFLVIVIVFYMLRE----DEKLVSWLKSTFPSLMAEYDGMLLKYGRA 212

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA----GVPSHVALGVITAIMAMIP-GG 257
           +   + K+     L +   AI    V       A     +PS + +G++  + A++P  G
Sbjct: 213 VDEDLEKIFFGNILSIVFFAILAATVFSVLNMFAPPGMSIPSPILMGILCGVSALLPVVG 272

Query: 258 APISFTAVSIYLLI----KGNIFNATCLFLW--GAIELFIV---DKTLRPFLVGGPIKLP 308
             I    + +Y+L+     G  F     ++    AI +F+    D  LRPF+  G +   
Sbjct: 273 MYIVIVPLLLYVLVISLMAGTFFPNIVFYIMMVAAIMIFVEVLPDFVLRPFMSSGRVHTG 332

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            L   F  + G    G+ GLFIG +++ L+   ++  + AI    E
Sbjct: 333 LL--MFAYILGPIVFGIAGLFIGAIVLVLLTHYFRIVVPAISRESE 376


>gi|312864862|ref|ZP_07725093.1| putative membrane protein [Streptococcus downei F0415]
 gi|311099989|gb|EFQ58202.1| putative membrane protein [Streptococcus downei F0415]
          Length = 388

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 112/260 (43%), Gaps = 29/260 (11%)

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            ++  V++V+  N+     P+ L D     W +   +K + +       +E F K     
Sbjct: 128 SVERQVNQVIADNRFEAIRPQ-LED-----WVNNYSSKAIGY-------AENFSKN---- 170

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK-ISRI 206
            I  +A  F        ++II M   +F+  RD    S +L       FP  W+K +SRI
Sbjct: 171 -IVSWAGDFASAVTRVAIAIIMMPFIVFYLLRD----SDKLKGSILKTFPVKWRKPLSRI 225

Query: 207 VPKVI---RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISF 262
           +  V    +    G   +AI  G++    + L  +   VALG++  ++ +IP  G+ ++ 
Sbjct: 226 LSDVNTQWQGYVQGQVTVAIVVGIMFSILFSLIDLRYAVALGILAGVLNLIPYLGSFLAM 285

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
               I  L+ G       L ++ A+E  I  + + P ++G  + +  +   F L+     
Sbjct: 286 LPAIILGLVAGPWMLIKVLIVF-AVEQTIEGRFVSPLVLGTKLSIHPIMILFILLASGSV 344

Query: 323 MGLLGLFIG-PVLMALIAVI 341
            G+ G+ +G PV  AL  V+
Sbjct: 345 FGVWGVLLGIPVYSALKVVV 364


>gi|282876206|ref|ZP_06285073.1| putative membrane protein [Staphylococcus epidermidis SK135]
 gi|281295231|gb|EFA87758.1| putative membrane protein [Staphylococcus epidermidis SK135]
          Length = 368

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 82/190 (43%), Gaps = 8/190 (4%)

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV---IRSTFLGMTIIAIGEGLVLG 230
           LFF  +DG       D   + + P + K    ++ K+   + S   G  I++   GL+L 
Sbjct: 167 LFFMLKDGHKFK---DYTTKIMPPKFRKDFHDLLEKMSVQVGSYIQGQIIVSFCIGLLLF 223

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
             Y + G+   + L  I A+ +++P  G  I+ +   +  +I   +       +W  ++ 
Sbjct: 224 IGYSIIGLKYALVLASIAAVTSVVPYLGPTIAISPAIVIAIITSPLMLLKLAVVWTLVQF 283

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           F     + P ++G  +K+  L   F L+     MG++G+ IG  L A++ V+     M  
Sbjct: 284 F-EGHFISPNVMGKTLKIHPLTIIFILLCAGNLMGIVGVIIGIPLYAVLKVLVSHIFMLF 342

Query: 350 KENKEKISSN 359
           K    +   N
Sbjct: 343 KRRYNRYYGN 352


>gi|225868326|ref|YP_002744274.1| membrane protein [Streptococcus equi subsp. zooepidemicus]
 gi|225701602|emb|CAW98855.1| putative membrane protein [Streptococcus equi subsp. zooepidemicus]
          Length = 393

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 113/257 (43%), Gaps = 25/257 (9%)

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
           + S L     S  Q     +++F K N ID+   FA     I     ++II     LF+F
Sbjct: 145 YRSNLQDMLTSMSQKALDYAQSFSK-NAIDWAGNFAGAIARI----TVAIIMSPFILFYF 199

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKK-ISRIVPKV---IRSTFLGMTIIAIGEGLVLGSAY 233
            RD   +   L     ++ P   ++ ++R++ ++   +     G   +AI  GL+    +
Sbjct: 200 LRDSGHMKNGL----VNVLPIKLRQPMARVLGEINQQLSGYVQGQVTVAIVVGLMFSVMF 255

Query: 234 WLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            L G+   +  G+I   + MIP  G+ ++   V I  +++G +     L ++  IE  I 
Sbjct: 256 SLVGLNYSITFGIIAGFLNMIPYLGSFLAMIPVVIMGMVQGPLMLIKVLIIF-VIEQTIE 314

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF-IGPVLMALIAVI-----WKESI 346
            + + P ++G  + +  +   F L+      G+ G+F + PV  ++  V+     W + I
Sbjct: 315 GRFVAPLVLGNKLSIHPITIMFLLLTAGSMFGVWGVFLVIPVYASVKVVVKELFDWYKDI 374

Query: 347 MAIKENK----EKISSN 359
             + E K    E+I+ +
Sbjct: 375 TGLYEEKPTEAERIAED 391


>gi|108760978|ref|YP_629833.1| hypothetical protein MXAN_1581 [Myxococcus xanthus DK 1622]
 gi|108464858|gb|ABF90043.1| putative membrane protein [Myxococcus xanthus DK 1622]
          Length = 395

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 1/105 (0%)

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI-KGNIFNATCLFLWGAIELFI 291
           + +A VP+ +    +   MA+IP         V+  L+   G+ + A  L +WG + + +
Sbjct: 231 FLIARVPAALFFAGVAFFMALIPAVGAAIVVLVAAALMFFSGHPWAALFLAIWGTVVVGL 290

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
           VD  ++P L    +       FF L+GG+   G +GL +GP+++A
Sbjct: 291 VDNIVKPLLARRGMHQHAAIVFFALLGGLAAFGTVGLLLGPLIVA 335


>gi|303240190|ref|ZP_07326710.1| protein of unknown function UPF0118 [Acetivibrio cellulolyticus
           CD2]
 gi|302592281|gb|EFL62009.1| protein of unknown function UPF0118 [Acetivibrio cellulolyticus
           CD2]
          Length = 365

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 7/98 (7%)

Query: 166 SIIFMI-IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI---VPKVIRSTFLGMTII 221
           +II MI   LF+F +D    S+   +L EHL   +   + +I   + K + S  +G   +
Sbjct: 165 TIILMIPFILFYFLKDDEEFSK---NLIEHLPKKHVANVEKILYDIDKALSSYLVGQMTV 221

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
           A+ +G+++   Y + G+   + L +   I A+IP   P
Sbjct: 222 AMADGILMFIGYLIIGIKYPLILSIFVVITAIIPFFGP 259


>gi|251810791|ref|ZP_04825264.1| permease [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805719|gb|EES58376.1| permease [Staphylococcus epidermidis BCM-HMP0060]
 gi|329735852|gb|EGG72131.1| putative membrane protein [Staphylococcus epidermidis VCU028]
          Length = 405

 Score = 37.4 bits (85), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 82/190 (43%), Gaps = 8/190 (4%)

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV---IRSTFLGMTIIAIGEGLVLG 230
           LFF  +DG       D   + + P + K    ++ K+   + S   G  I++   GL+L 
Sbjct: 204 LFFMLKDGHKFK---DYTTKIMPPKFRKDFHDLLEKMSVQVGSYIQGQIIVSFCIGLLLF 260

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
             Y + G+   + L  I A+ +++P  G  I+ +   +  +I   +       +W  ++ 
Sbjct: 261 IGYSIIGLKYALVLASIAAVTSVVPYLGPTIAISPAIVIAIITSPLMLLKLAVVWTLVQF 320

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           F     + P ++G  +K+  L   F L+     MG++G+ IG  L A++ V+     M  
Sbjct: 321 F-EGHFISPNVMGKTLKIHPLTIIFILLCAGNLMGIVGVIIGIPLYAVLKVLVSHIFMLF 379

Query: 350 KENKEKISSN 359
           K    +   N
Sbjct: 380 KRRYNRYYGN 389


>gi|84497791|ref|ZP_00996588.1| integral membrane protein [Janibacter sp. HTCC2649]
 gi|84381291|gb|EAP97174.1| integral membrane protein [Janibacter sp. HTCC2649]
          Length = 404

 Score = 37.4 bits (85), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 89/203 (43%), Gaps = 27/203 (13%)

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY------------W 200
           A++ G+            + ALFFF  DG    +++ +    LFP              W
Sbjct: 190 AAQAGLTVTHLVAGFFISMFALFFFLYDG----ERIWAWVVRLFPRTSRDRVHSSGVIAW 245

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
            ++S       R+T L   + A+G G+V G    L GVP    + V+    A IP  GA 
Sbjct: 246 GQLSAFT----RATILVAAVDALGIGIVAG----LLGVPFASGVAVLVFFGAFIPVIGAA 297

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK-TLRPFLVGGPIKLPFLPTFFGLVG 318
           IS  AV + L +         + L G I +  ++   L+PFL+G  +++  L    G+ G
Sbjct: 298 IS-GAVPVLLALVALGPVQALIMLGGVIAVQQLESHVLQPFLLGRAVRVHPLAVILGIAG 356

Query: 319 GVRTMGLLGLFIGPVLMALIAVI 341
           GV   G+LG  I   L+A++  +
Sbjct: 357 GVVAAGILGALIAVPLVAVLNAV 379


>gi|171779330|ref|ZP_02920294.1| hypothetical protein STRINF_01175 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281947|gb|EDT47378.1| hypothetical protein STRINF_01175 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 371

 Score = 37.4 bits (85), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 78/176 (44%), Gaps = 7/176 (3%)

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS----AYWLAGV 238
            +S+Q + L +     Y K +  ++  ++   F G  +    E ++LGS       L  +
Sbjct: 196 QLSRQFNLLIDSYLGKYAKTVHYVLD-ILHQRFHGFFVGQTLEAMILGSLTAGGMLLLHL 254

Query: 239 PSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P    +G++ A  A+IP  GA I  T +   L+   ++  A    ++  +        + 
Sbjct: 255 PYAATIGILVAFTALIPVVGAYIGLT-IGFILIATQSVSQAIFFVIYLVVLQQFEGNLIY 313

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           P +VGG I LP +     +  G    G+LG+ +   L A +  I K+++   +EN+
Sbjct: 314 PRVVGGSIGLPGMWVLMAITIGAALWGVLGMLVAVPLAASLYQIIKDNVAKRQENR 369


>gi|313123300|ref|YP_004033559.1| permease [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279863|gb|ADQ60582.1| Predicted permease [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 384

 Score = 37.4 bits (85), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 2/169 (1%)

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           LFF  +DG  +   L       +     K+   V + + S  +G   +AI  G++L   Y
Sbjct: 180 LFFMLKDGHKLRPFLVKFAPQRWEQATSKLLHEVNQAVSSYVIGQVSVAICVGIMLFIGY 239

Query: 234 WLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            + G P   AL + +  + +IP  G  I      I  L+      A  L ++  IE  I 
Sbjct: 240 TIIGEPYGAALAICSGFLNLIPYFGTFIGLIPALIIALVTDLSMVAKVLVVF-FIEQIIE 298

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            + + P +VG  +K+    T   ++G     GL G+  G  + A++ ++
Sbjct: 299 TRVISPLVVGNRLKMHPATTIVVMLGAGSVWGLWGVIGGIPIYAVMKIL 347


>gi|315303146|ref|ZP_07873817.1| membrane protein YdbI [Listeria ivanovii FSL F6-596]
 gi|313628477|gb|EFR96939.1| membrane protein YdbI [Listeria ivanovii FSL F6-596]
          Length = 360

 Score = 37.4 bits (85), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 14/155 (9%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
           KVI + F    IIA+   ++   A W+ G P  + L ++  ++ +IP  G  IS   ++I
Sbjct: 212 KVIEAQF----IIALVNAVLTTIALWILGFPQLMTLSIMVFLLGLIPVAGVIISLVPLTI 267

Query: 268 YLLIKGNI----FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
                G +    +    + +  A+E ++    L P L+     LP   TF  L+ G    
Sbjct: 268 IGYSIGGVEYIFYILIVVIVIHALESYV----LNPKLMSAKTNLPVFYTFIILIFGEHFF 323

Query: 324 GLLGLFIG-PVLMALIAVIWKESIMAIKENKEKIS 357
           G+ GL +G PV+M  + V+       I++ K+ IS
Sbjct: 324 GIWGLIVGIPVVMFFLDVLGVTGQEEIEQPKDTIS 358


>gi|254416119|ref|ZP_05029874.1| conserved domain protein, putative [Microcoleus chthonoplastes PCC
           7420]
 gi|196177052|gb|EDX72061.1| conserved domain protein, putative [Microcoleus chthonoplastes PCC
           7420]
          Length = 336

 Score = 37.4 bits (85), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 2/95 (2%)

Query: 238 VPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           +P  + L  I  +  +IP  GA +  T V++ +L +G + + T L +   ++  + +  L
Sbjct: 223 IPYALVLAAIAGVFDLIPAIGATLGITIVALIVLPQGILLSITVLAICVTLQQ-VEENLL 281

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
            P ++ G + +  +  FF L+ G R  GLLG+F+ 
Sbjct: 282 MPRIMQGSLDMNPVVMFFALLVGARVAGLLGVFLA 316


>gi|27467958|ref|NP_764595.1| hypothetical protein SE1040 [Staphylococcus epidermidis ATCC 12228]
 gi|27315503|gb|AAO04637.1|AE016747_134 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
          Length = 409

 Score = 37.4 bits (85), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 82/190 (43%), Gaps = 8/190 (4%)

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV---IRSTFLGMTIIAIGEGLVLG 230
           LFF  +DG       D   + + P + K    ++ K+   + S   G  I++   GL+L 
Sbjct: 208 LFFMLKDGHKFK---DYTTKIMPPKFRKDFHDLLEKMSVQVGSYIQGQIIVSFCIGLLLF 264

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
             Y + G+   + L  I A+ +++P  G  I+ +   +  +I   +       +W  ++ 
Sbjct: 265 IGYSIIGLKYALVLASIAAVTSVVPYLGPTIAISPAIVIAIITSPLMLLKLAVVWTLVQF 324

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           F     + P ++G  +K+  L   F L+     MG++G+ IG  L A++ V+     M  
Sbjct: 325 F-EGHFISPNVMGKTLKIHPLTIIFILLCAGNLMGIVGVIIGIPLYAVLKVLVSHIFMLF 383

Query: 350 KENKEKISSN 359
           K    +   N
Sbjct: 384 KRRYNRYYGN 393


>gi|307128736|ref|YP_003880766.1| lysyl-tRNA synthetase [Candidatus Sulcia muelleri CARI]
 gi|306483198|gb|ADM90068.1| lysyl-tRNA synthetase [Candidatus Sulcia muelleri CARI]
          Length = 493

 Score = 37.4 bits (85), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 5/78 (6%)

Query: 110 LSDIPGGMWASELWTKH--LSHPQSLKILSETFLKT---NGIDFIPRFASRFGMIFLDYC 164
           L  IPGG  A    T H  L+ P  L+I +E FLK     G++++  F+  F    +D  
Sbjct: 204 LQSIPGGAIARPFITHHNALNIPLYLRISNELFLKKLIVGGLEYVYEFSRNFRNEGIDKI 263

Query: 165 LSIIFMIIALFFFYRDGF 182
            +  F I+ L+  Y+D F
Sbjct: 264 HNTEFTILELYVSYKDYF 281


>gi|163942329|ref|YP_001647213.1| sporulation integral membrane protein YtvI [Bacillus
           weihenstephanensis KBAB4]
 gi|163864526|gb|ABY45585.1| Sporulation integral membrane protein YtvI [Bacillus
           weihenstephanensis KBAB4]
          Length = 372

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 80/185 (43%), Gaps = 10/185 (5%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
           ++F+++A FF   D   ++ ++  L  +    Y K I   + K +         +     
Sbjct: 179 LVFVLLATFFISYDWHRLAHKVRKLLPNRLHGYGKTIFVDLRKALFGFVKAQLTLVSMTT 238

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           +++     +  VP  + + +IT ++ ++P  G    F    IY+   G+       F  G
Sbjct: 239 IIVLIGLLILRVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGD-----TAFAIG 293

Query: 286 AIELFIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            + L+IV     + + P ++   I L  L T   L  G +  G LGL IGPV++ L+  +
Sbjct: 294 LLILYIVVIVQRQIMEPKVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVILVLLNTL 353

Query: 342 WKESI 346
            K  +
Sbjct: 354 HKAHV 358


>gi|57866873|ref|YP_188508.1| hypothetical protein SERP0929 [Staphylococcus epidermidis RP62A]
 gi|242242638|ref|ZP_04797083.1| permease [Staphylococcus epidermidis W23144]
 gi|293366676|ref|ZP_06613352.1| conserved hypothetical protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|57637531|gb|AAW54319.1| conserved hypothetical protein [Staphylococcus epidermidis RP62A]
 gi|242233774|gb|EES36086.1| permease [Staphylococcus epidermidis W23144]
 gi|291318977|gb|EFE59347.1| conserved hypothetical protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|319401353|gb|EFV89564.1| conserved hypothetical protein [Staphylococcus epidermidis FRI909]
 gi|329725108|gb|EGG61602.1| putative membrane protein [Staphylococcus epidermidis VCU144]
 gi|329736684|gb|EGG72950.1| putative membrane protein [Staphylococcus epidermidis VCU045]
          Length = 405

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 82/190 (43%), Gaps = 8/190 (4%)

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV---IRSTFLGMTIIAIGEGLVLG 230
           LFF  +DG       D   + + P + K    ++ K+   + S   G  I++   GL+L 
Sbjct: 204 LFFMLKDGHKFK---DYTTKIMPPKFRKDFHDLLEKMSVQVGSYIQGQIIVSFCIGLLLF 260

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
             Y + G+   + L  I A+ +++P  G  I+ +   +  +I   +       +W  ++ 
Sbjct: 261 IGYSIIGLKYALVLASIAAVTSVVPYLGPTIAISPAIVIAIITSPLMLLKLAVVWTLVQF 320

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           F     + P ++G  +K+  L   F L+     MG++G+ IG  L A++ V+     M  
Sbjct: 321 F-EGHFISPNVMGKTLKIHPLTIIFILLCAGNLMGIVGVIIGIPLYAVLKVLVSHIFMLF 379

Query: 350 KENKEKISSN 359
           K    +   N
Sbjct: 380 KRRYNRYYGN 389


>gi|291485147|dbj|BAI86222.1| hypothetical protein BSNT_03979 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 279

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 16/158 (10%)

Query: 194 HLFPAYWKKIS----RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +L P  W+K      R V   +     G  ++ +  G++ G ++W+ G+P  + LG+I+ 
Sbjct: 117 YLTPKSWRKRGSAFLRDVDDSLGDYIRGQLLVCLILGVIAGISFWVFGLPYPLILGLISG 176

Query: 250 IMAMIP------GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           +  +IP      G  P    A++I   +K  +     +F    I  F+    L PF+VG 
Sbjct: 177 VTNVIPYFGPFIGAVPALLIAMTIS--VKAVLVVVITVF----ILQFMEGNILSPFIVGR 230

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            +K+  +     L+ G    G++G+ +     A++ V+
Sbjct: 231 SLKMHPVVIMLALLAGGELAGIVGMILAVPATAVLKVM 268


>gi|229105024|ref|ZP_04235678.1| hypothetical protein bcere0019_41600 [Bacillus cereus Rock3-28]
 gi|228678401|gb|EEL32624.1| hypothetical protein bcere0019_41600 [Bacillus cereus Rock3-28]
          Length = 361

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 26/172 (15%)

Query: 188 LDSLGE--HLF----PAYWKKISRIVPKVIR----STFLGMTIIAIGEGLVLGSAYWLAG 237
           L   GE  H+F    P+ W+   +++ K I     S   G   + +  G V   ++W  G
Sbjct: 185 LKDYGEFYHIFWKLVPSKWRSTGQMLAKEIDKSLGSYIRGQLFVCLVLGGVSVLSFWFIG 244

Query: 238 VPSHVALGVITAIMAMIP------GGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIEL 289
           +   + LG+I  +  +IP      G  P    A  VS  LLIK  I  A   FL   I  
Sbjct: 245 MKYPLLLGIIIGVTDIIPYFGPILGAIPTLMIAATVSTSLLIKAGITIAILQFLESNI-- 302

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                 L P++VG  +++  +     L+ G    G++GL I   ++A+I  +
Sbjct: 303 ------LSPYIVGKSLRMHPVIIMLALLVGGEVAGIVGLLISVPILAVIRTV 348


>gi|229019611|ref|ZP_04176424.1| hypothetical protein bcere0030_41130 [Bacillus cereus AH1273]
 gi|229025850|ref|ZP_04182248.1| hypothetical protein bcere0029_41410 [Bacillus cereus AH1272]
 gi|228735461|gb|EEL86058.1| hypothetical protein bcere0029_41410 [Bacillus cereus AH1272]
 gi|228741691|gb|EEL91878.1| hypothetical protein bcere0030_41130 [Bacillus cereus AH1273]
          Length = 361

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 26/172 (15%)

Query: 188 LDSLGE--HLF----PAYWKKISRIVPKVIR----STFLGMTIIAIGEGLVLGSAYWLAG 237
           L   GE  H+F    P+ W+   +++ K I     S   G   + +  G V   ++W  G
Sbjct: 185 LKDYGEFYHIFWKLVPSKWRSTGQMLAKEIDKSLGSYIRGQLFVCLVLGGVSVLSFWFIG 244

Query: 238 VPSHVALGVITAIMAMIP------GGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIEL 289
           +   + LG+I  +  +IP      G  P    A  VS  LLIK  I  A   FL   I  
Sbjct: 245 MKYPLLLGIIIGVTDIIPYFGPILGAIPTLMIAATVSTSLLIKAGITIAILQFLESNI-- 302

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                 L P++VG  +++  +     L+ G    G++GL I   ++A+I  +
Sbjct: 303 ------LSPYIVGKSLRMHPVIIMLALLVGGEVAGIVGLLISVPVLAIIRTV 348


>gi|218899559|ref|YP_002447970.1| hypothetical protein BCG9842_B0726 [Bacillus cereus G9842]
 gi|218541668|gb|ACK94062.1| putative membrane protein [Bacillus cereus G9842]
          Length = 355

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 78/184 (42%), Gaps = 27/184 (14%)

Query: 188 LDSLGE--HLF----PAYWKKISRIVPKVIR----STFLGMTIIAIGEGLVLGSAYWLAG 237
           L   GE  H+F    P+ W+   +++ K I     S   G   + +  G V   ++W  G
Sbjct: 179 LKDYGEFYHIFWKLVPSKWRGTGQMLAKEIDKSLGSYIRGQLFVCLVLGGVSALSFWFIG 238

Query: 238 VPSHVALGVITAIMAMIP------GGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIEL 289
           +   + LG+I  +  +IP      G  P    A  VS  LLIK  I  A        I  
Sbjct: 239 MKYPLLLGIIIGVTDIIPYFGPILGAIPTLMIAATVSTSLLIKAGITIA--------ILQ 290

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMA 348
           F+    L P++VG  +++  +     L+ G    G++GL I  P+L  +  VI     + 
Sbjct: 291 FVESNILSPYIVGKSLRMHPVIIMLALLVGGEVAGIVGLLISVPILAVIRTVIVHVKPLL 350

Query: 349 IKEN 352
            KE+
Sbjct: 351 KKED 354


>gi|229175064|ref|ZP_04302582.1| hypothetical protein bcere0006_41460 [Bacillus cereus MM3]
 gi|228608432|gb|EEK65736.1| hypothetical protein bcere0006_41460 [Bacillus cereus MM3]
          Length = 361

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 26/172 (15%)

Query: 188 LDSLGE--HLF----PAYWKKISRIVPKVIR----STFLGMTIIAIGEGLVLGSAYWLAG 237
           L   GE  H+F    P+ W+   +++ K I     S   G   + +  G V   ++W  G
Sbjct: 185 LKDYGEFYHIFWKLVPSKWRSTGQMLAKEIDKSLGSYIRGQLFVCLVLGGVSVLSFWFIG 244

Query: 238 VPSHVALGVITAIMAMIP------GGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIEL 289
           +   + LG+I  +  +IP      G  P    A  VS  LLIK  I  A   FL   I  
Sbjct: 245 MKYPLLLGIIIGVTDIIPYFGPILGAIPTLMIAATVSTSLLIKAGITIAILQFLESNI-- 302

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                 L P++VG  +++  +     L+ G    G++GL I   ++A+I  +
Sbjct: 303 ------LSPYIVGKSLRMHPVIIMLALLVGGEIAGIVGLLISVPILAVIRTV 348


>gi|225868492|ref|YP_002744440.1| membrane protein [Streptococcus equi subsp. zooepidemicus]
 gi|225701768|emb|CAW99160.1| putative membrane protein [Streptococcus equi subsp. zooepidemicus]
          Length = 384

 Score = 37.4 bits (85), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 82/181 (45%), Gaps = 7/181 (3%)

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS----AYWLAGV 238
            + QQ  +L +     Y K +  +V  ++ S F G  +    E ++LGS      ++  +
Sbjct: 206 ELCQQATTLIDTYTGKYAKTVHYLVS-LLHSRFRGFFVSQTLEAMILGSLTAIGMFILQL 264

Query: 239 PSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P    +GV+ A  A+IP  GA I   A+   L++  ++  A    ++  I   I    + 
Sbjct: 265 PFAGTIGVLVAFTALIPVVGASIG-AAIGFVLIMTQSMSQAVVFIVFLVILQQIEGNFIY 323

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           P +VGG I LP +     +  G    G++G+ +   L A +  + K+ I   +  +++ S
Sbjct: 324 PRVVGGSIGLPAMWVLMAITIGAALKGIVGMIVAVPLAATLYQVIKDHIHKKQALQDRQS 383

Query: 358 S 358
           +
Sbjct: 384 N 384


>gi|332187090|ref|ZP_08388830.1| hypothetical protein SUS17_2225 [Sphingomonas sp. S17]
 gi|332012790|gb|EGI54855.1| hypothetical protein SUS17_2225 [Sphingomonas sp. S17]
          Length = 364

 Score = 37.4 bits (85), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 4/128 (3%)

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           +R+  + MT + +  G+ LG    +AGVPS  ALG++T +   +P   PI+    ++ L 
Sbjct: 201 LRAQLIQMTTMGVLVGIGLG----IAGVPSAAALGLLTGLSEFVPYVGPIAAMLPALGLA 256

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            +G         +  A+   I    + PF+    + +P   T F ++      GL GLF 
Sbjct: 257 AQGGNGAVIGTLVTFAVVRLIQTNAITPFVTSRVVAIPPAITLFAIIAIGTIFGLFGLFF 316

Query: 331 GPVLMALI 338
              ++ ++
Sbjct: 317 SAAILVVV 324


>gi|228967465|ref|ZP_04128494.1| hypothetical protein bthur0004_42630 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228792242|gb|EEM39815.1| hypothetical protein bthur0004_42630 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 361

 Score = 37.4 bits (85), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 78/184 (42%), Gaps = 27/184 (14%)

Query: 188 LDSLGE--HLF----PAYWKKISRIVPKVIR----STFLGMTIIAIGEGLVLGSAYWLAG 237
           L   GE  H+F    P+ W+   +++ K I     S   G   + +  G V   ++W  G
Sbjct: 185 LKDYGEFYHIFWKLVPSKWRGTGQMLAKEIDKSLGSYIRGQLFVCLVLGGVSALSFWFIG 244

Query: 238 VPSHVALGVITAIMAMIP------GGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIEL 289
           +   + LG+I  +  +IP      G  P    A  VS  LLIK  I  A        I  
Sbjct: 245 MKYPLLLGIIIGVTDIIPYFGPILGAIPTLMIAATVSTSLLIKAGITIA--------ILQ 296

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMA 348
           F+    L P++VG  +++  +     L+ G    G++GL I  P+L  +  VI     + 
Sbjct: 297 FVESNILSPYIVGKSLRMHPVIIMLALLVGGEVAGIVGLLISVPILAVIRTVIVHVKPLL 356

Query: 349 IKEN 352
            KE+
Sbjct: 357 KKED 360


>gi|72535366|gb|AAT67989.2| permease protein [Halobacterium sp. AS7092]
          Length = 322

 Score = 37.4 bits (85), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 10/149 (6%)

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEG----LVLGSAYWLAGVPSHVALGVITAIMA 252
           P  ++ +   + K  R T   + ++ +       LV    + L G  + + L ++ A++ 
Sbjct: 126 PHDYRDVVYALTKRARETLYAIYVLQVATSIATLLVAYPLFRLLGYEAALTLSIMAAVLQ 185

Query: 253 MIPGGAPISFTA-VSIYLLIKGNIFNATCLFLWGAIELFIV---DKTLRPFLVGGPIKLP 308
            +P   P    A +++Y +  G++  AT + + G +  F+    D  +RP L      LP
Sbjct: 186 FVPIIGPSMLIAPITLYHVAVGDLVAATLIGVLGLV--FVAWLPDIAVRPRLSRRSAGLP 243

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
               F G  GG+ T+G +G+ +GP+++A+
Sbjct: 244 GSLYFVGFTGGLFTLGPIGIVVGPLIVAV 272


>gi|322411655|gb|EFY02563.1| hypothetical membrane spanning protein [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 375

 Score = 37.4 bits (85), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 65/303 (21%), Positives = 128/303 (42%), Gaps = 45/303 (14%)

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           +IA++S +  F  P           +KE+V+++    +H   + R +  I G    ++  
Sbjct: 104 LIASISALTKFDTP----------SIKEVVNQL----EHNKLLARVIKYIGGDAKLTQTI 149

Query: 124 TKHLSHPQSLKILSETFLK------TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
           T +          S+  LK      TN +  +   AS    +F+ +  S+        + 
Sbjct: 150 TSY----------SQQLLKQFIGVLTNILTSVTVIASAIINLFISFVFSL--------YV 191

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS----AY 233
             +  S+ +Q ++L +     Y + I  +V  ++   F G  +    E ++LG+      
Sbjct: 192 LANKESLCRQGNTLVDTYTGKYAQSIHYLVD-LLHHRFHGFFVSQTLEAMILGTLTTTGM 250

Query: 234 WLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           +L  +P    +GV+ A  A+IP  GA I   A+   L++  ++  A    ++  I   I 
Sbjct: 251 FLLQLPFAGTIGVLVAFTALIPVVGASIG-AAIGFVLIMTQSMSQAIVFIVFLIILQQIE 309

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              + P +VGG I LP +     +  G    G++G+ I   L A +  + K++I   +  
Sbjct: 310 GNFIYPRVVGGSIGLPAMWVLMAITIGASLRGIVGMIIAVPLAATLYQVIKDNIQRKQAI 369

Query: 353 KEK 355
           ++K
Sbjct: 370 QKK 372


>gi|225870497|ref|YP_002746444.1| membrane protein [Streptococcus equi subsp. equi 4047]
 gi|225699901|emb|CAW93811.1| putative membrane protein [Streptococcus equi subsp. equi 4047]
          Length = 384

 Score = 37.4 bits (85), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 7/181 (3%)

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS----AYWLAGV 238
            + QQ  +L +     Y K I  +V  ++ S F G  +    E ++LGS      ++  +
Sbjct: 206 ELCQQATTLIDTYTGKYAKAIHYLVG-LLHSRFRGFFVSQTLEAMILGSLTAIGMFILQL 264

Query: 239 PSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P    +GV+ A  A+IP  GA I   A+   L++  ++  A    ++  I   I    + 
Sbjct: 265 PFAGTIGVLVAFTALIPVVGASIG-AAIGFVLIMTQSMSQAVVFIVFLVILQQIEGNFIY 323

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           P +VGG I LP +     +  G    G++G+ +   L A +  + K+ I   +  + + S
Sbjct: 324 PRVVGGSIGLPAMWVLMAITIGAALKGIVGMIVAVPLAATLYQVVKDHIHKKQALQNRQS 383

Query: 358 S 358
           S
Sbjct: 384 S 384


>gi|30022466|ref|NP_834097.1| hypothetical protein BC4385 [Bacillus cereus ATCC 14579]
 gi|206969567|ref|ZP_03230521.1| putative membrane protein [Bacillus cereus AH1134]
 gi|218236103|ref|YP_002369200.1| hypothetical protein BCB4264_A4510 [Bacillus cereus B4264]
 gi|296504881|ref|YP_003666581.1| hypothetical protein BMB171_C4052 [Bacillus thuringiensis BMB171]
 gi|29898024|gb|AAP11298.1| hypothetical Membrane Spanning Protein [Bacillus cereus ATCC 14579]
 gi|206735255|gb|EDZ52423.1| putative membrane protein [Bacillus cereus AH1134]
 gi|218164060|gb|ACK64052.1| putative membrane protein [Bacillus cereus B4264]
 gi|296325933|gb|ADH08861.1| hypothetical protein BMB171_C4052 [Bacillus thuringiensis BMB171]
          Length = 355

 Score = 37.4 bits (85), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 78/184 (42%), Gaps = 27/184 (14%)

Query: 188 LDSLGE--HLF----PAYWKKISRIVPKVIR----STFLGMTIIAIGEGLVLGSAYWLAG 237
           L   GE  H+F    P+ W+   +++ K I     S   G   + +  G V   ++W  G
Sbjct: 179 LKDYGEFYHIFWKLVPSKWRGTGQMLAKEIDKSLGSYIRGQLFVCLVLGGVSALSFWFIG 238

Query: 238 VPSHVALGVITAIMAMIP------GGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIEL 289
           +   + LG+I  +  +IP      G  P    A  VS  LLIK  I  A        I  
Sbjct: 239 MKYPLLLGIIIGVTDIIPYFGPILGAIPTLMIAATVSTSLLIKAGITIA--------ILQ 290

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMA 348
           F+    L P++VG  +++  +     L+ G    G++GL I  P+L  +  VI     + 
Sbjct: 291 FVESNILSPYIVGKSLRMHPVIIMLALLVGGEVAGIVGLLISVPILAVIRTVIVHVRPLL 350

Query: 349 IKEN 352
            KE+
Sbjct: 351 KKED 354


>gi|119486999|ref|ZP_01620871.1| hypothetical protein L8106_18821 [Lyngbya sp. PCC 8106]
 gi|119455928|gb|EAW37062.1| hypothetical protein L8106_18821 [Lyngbya sp. PCC 8106]
          Length = 376

 Score = 37.4 bits (85), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 26/204 (12%)

Query: 170 MIIALF---FFYRDGFSISQQLDSLGEHLFPAYWK--------KISRIVPKVIRSTFLGM 218
           +IIALF   +   D  ++ + L      LFP  W         ++SR +   IR   L  
Sbjct: 169 LIIALFVSGYMVADSNTLIKSL----VQLFPYPWNERLNAQVSQVSRRMGGYIRGRLLVS 224

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI-SFTAVSIYLLIKGNIFN 277
            I+ +   + LG   +L      + LG I  +  +IP   PI       I  L KG    
Sbjct: 225 GILGVATTMGLG---FLGLREFALGLGAIAGVTNLIPFLGPILGAIPALIVALAKGGFLF 281

Query: 278 ATCLFLW---GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
              L L+     +E +++D    P LVG  + +  L     ++GGV+ +G+LG  I P  
Sbjct: 282 FWVLLLYVIAQNVETYVLD----PLLVGTSVGVHPLFQLLSVLGGVQVLGILGALIVPPW 337

Query: 335 MALIAVIWKESIMAIKENKEKISS 358
            A +A + +   +  KE +E++  
Sbjct: 338 FAGVAALVENLYLKPKEEQEQLKK 361


>gi|228910226|ref|ZP_04074044.1| hypothetical protein bthur0013_43740 [Bacillus thuringiensis IBL
           200]
 gi|228923142|ref|ZP_04086433.1| hypothetical protein bthur0011_41220 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228954675|ref|ZP_04116698.1| hypothetical protein bthur0006_40440 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228960662|ref|ZP_04122307.1| hypothetical protein bthur0005_41240 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229048098|ref|ZP_04193671.1| hypothetical protein bcere0027_40710 [Bacillus cereus AH676]
 gi|229071899|ref|ZP_04205110.1| hypothetical protein bcere0025_40660 [Bacillus cereus F65185]
 gi|229081655|ref|ZP_04214150.1| hypothetical protein bcere0023_42850 [Bacillus cereus Rock4-2]
 gi|229111863|ref|ZP_04241409.1| hypothetical protein bcere0018_41070 [Bacillus cereus Rock1-15]
 gi|229129671|ref|ZP_04258639.1| hypothetical protein bcere0015_41130 [Bacillus cereus BDRD-Cer4]
 gi|229146961|ref|ZP_04275325.1| hypothetical protein bcere0012_41000 [Bacillus cereus BDRD-ST24]
 gi|229152594|ref|ZP_04280783.1| hypothetical protein bcere0011_41290 [Bacillus cereus m1550]
 gi|229180666|ref|ZP_04308006.1| hypothetical protein bcere0005_40100 [Bacillus cereus 172560W]
 gi|228602811|gb|EEK60292.1| hypothetical protein bcere0005_40100 [Bacillus cereus 172560W]
 gi|228630855|gb|EEK87495.1| hypothetical protein bcere0011_41290 [Bacillus cereus m1550]
 gi|228636560|gb|EEK93026.1| hypothetical protein bcere0012_41000 [Bacillus cereus BDRD-ST24]
 gi|228653788|gb|EEL09658.1| hypothetical protein bcere0015_41130 [Bacillus cereus BDRD-Cer4]
 gi|228671619|gb|EEL26917.1| hypothetical protein bcere0018_41070 [Bacillus cereus Rock1-15]
 gi|228701659|gb|EEL54150.1| hypothetical protein bcere0023_42850 [Bacillus cereus Rock4-2]
 gi|228711195|gb|EEL63159.1| hypothetical protein bcere0025_40660 [Bacillus cereus F65185]
 gi|228723253|gb|EEL74625.1| hypothetical protein bcere0027_40710 [Bacillus cereus AH676]
 gi|228799026|gb|EEM45998.1| hypothetical protein bthur0005_41240 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228805002|gb|EEM51598.1| hypothetical protein bthur0006_40440 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228836521|gb|EEM81871.1| hypothetical protein bthur0011_41220 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228849390|gb|EEM94226.1| hypothetical protein bthur0013_43740 [Bacillus thuringiensis IBL
           200]
          Length = 361

 Score = 37.4 bits (85), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 78/184 (42%), Gaps = 27/184 (14%)

Query: 188 LDSLGE--HLF----PAYWKKISRIVPKVIR----STFLGMTIIAIGEGLVLGSAYWLAG 237
           L   GE  H+F    P+ W+   +++ K I     S   G   + +  G V   ++W  G
Sbjct: 185 LKDYGEFYHIFWKLVPSKWRGTGQMLAKEIDKSLGSYIRGQLFVCLVLGGVSALSFWFIG 244

Query: 238 VPSHVALGVITAIMAMIP------GGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIEL 289
           +   + LG+I  +  +IP      G  P    A  VS  LLIK  I  A        I  
Sbjct: 245 MKYPLLLGIIIGVTDIIPYFGPILGAIPTLMIAATVSTSLLIKAGITIA--------ILQ 296

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMA 348
           F+    L P++VG  +++  +     L+ G    G++GL I  P+L  +  VI     + 
Sbjct: 297 FVESNILSPYIVGKSLRMHPVIIMLALLVGGEVAGIVGLLISVPILAVIRTVIVHVRPLL 356

Query: 349 IKEN 352
            KE+
Sbjct: 357 KKED 360


>gi|41614957|ref|NP_963455.1| hypothetical protein NEQ162 [Nanoarchaeum equitans Kin4-M]
 gi|40068681|gb|AAR39016.1| NEQ162 [Nanoarchaeum equitans Kin4-M]
          Length = 327

 Score = 37.4 bits (85), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 81/178 (45%), Gaps = 4/178 (2%)

Query: 162 DYCLSIIFMIIALFFFYRDGF-SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
           D  L I   +++ ++F  DG  +I   ++ + E        +I       + +  +G   
Sbjct: 124 DMFLGIFIAMLSAYYFLLDGQKAIDYIINWIAES--KEDRNQIINTTKSYLDAVIIGTIF 181

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNAT 279
            A+ + +V    + +  +   + L ++  I+A++P  G  + +  +++Y  ++ NI    
Sbjct: 182 GALAQAVVSYIGFLILNIKLALVLSILVFIVAILPIVGPSMIWVLLALYYFMQNNISFTI 241

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
              ++G   + ++D  +R F V     +  L     ++GG   MG  GLF+GPVL+ L
Sbjct: 242 FSLVYGLFVVGLIDNIVRMFTVSSKADIHPLLAALSMIGGSILMGFAGLFLGPVLVGL 299


>gi|153816489|ref|ZP_01969157.1| hypothetical protein RUMTOR_02742 [Ruminococcus torques ATCC 27756]
 gi|317500769|ref|ZP_07958986.1| hypothetical protein HMPREF1026_00929 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089753|ref|ZP_08338647.1| hypothetical protein HMPREF1025_02230 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846185|gb|EDK23103.1| hypothetical protein RUMTOR_02742 [Ruminococcus torques ATCC 27756]
 gi|316897862|gb|EFV19916.1| hypothetical protein HMPREF1026_00929 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330403636|gb|EGG83191.1| hypothetical protein HMPREF1025_02230 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 380

 Score = 37.4 bits (85), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 75/173 (43%), Gaps = 4/173 (2%)

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA----GVPSHV 242
           Q+  +        W+K    V  +   TF         E L+LGS +++A     +P  +
Sbjct: 208 QVKKVMHAFLKEKWEKRCLKVCTLTSKTFSNFLTGQCLEALILGSMFFVAMSLFKMPYAL 267

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            +GV+ A  A+IP         V  +L++  +   A    +   +   I    + P +VG
Sbjct: 268 LVGVLVAFTALIPIFGAFIGCVVGAFLILMVDPLQALFFVIMFLVLQQIEGNLIYPKVVG 327

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             + LP +     +  G   MG++G+ I   L++++  +++ES+    E K++
Sbjct: 328 NSVGLPSIWVLAAVTIGGSLMGVVGMLIFIPLVSVVYTLFRESVYKRLEQKQR 380


>gi|288555382|ref|YP_003427317.1| putative autoinducer export protein AI-2E [Bacillus pseudofirmus
           OF4]
 gi|288546542|gb|ADC50425.1| putative autoinducer export protein AI-2E [Bacillus pseudofirmus
           OF4]
          Length = 354

 Score = 37.0 bits (84), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 16/175 (9%)

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYW----KKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
           +F+F +D F +   ++ +  +L P  W    K+ ++ V     S   G  ++A+   ++ 
Sbjct: 176 VFYFLKD-FDL---IEKVSWYLTPRKWRPGLKRYAKDVDHSFGSYIRGQLLVALAVTIIS 231

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKG---NIFNATCLFLWG 285
              +WL GVP  + LGV      MIP  GA I      I  L +     +  A  + +  
Sbjct: 232 SLGFWLIGVPYPILLGVFMGATEMIPYFGAYIGAVPAIIIALFESWQLALITAGFILILQ 291

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            IE       L P +VG  + L  +     LV G+   G++GL +    +A++ V
Sbjct: 292 QIE----GNILSPVIVGKTLHLHPILIILALVIGIEAGGVIGLLLAVPALAILKV 342


>gi|229135431|ref|ZP_04264218.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           BDRD-ST196]
 gi|228647992|gb|EEL04040.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           BDRD-ST196]
          Length = 365

 Score = 37.0 bits (84), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 80/185 (43%), Gaps = 10/185 (5%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
           ++F+++A FF   D   ++ ++  L  +    Y K I   + K +         +     
Sbjct: 172 LVFVLLATFFISYDWHRLAHKVRKLLPNRLHGYGKTIFVDLRKALFGFVKAQLTLVSMTT 231

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           +++     +  VP  + + +IT ++ ++P  G    F    IY+   G+       F  G
Sbjct: 232 IIVLIGLLILRVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGD-----TAFAIG 286

Query: 286 AIELFIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            + L+IV     + + P ++   I L  L T   L  G +  G LGL IGPV++ L+  +
Sbjct: 287 LLILYIVVIVQRQIMEPKVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVILVLLNTL 346

Query: 342 WKESI 346
            K  +
Sbjct: 347 HKAHV 351


>gi|24379535|ref|NP_721490.1| putative permease [Streptococcus mutans UA159]
 gi|290580464|ref|YP_003484856.1| putative permease [Streptococcus mutans NN2025]
 gi|24377477|gb|AAN58796.1|AE014947_8 putative permease [Streptococcus mutans UA159]
 gi|254997363|dbj|BAH87964.1| putative permease [Streptococcus mutans NN2025]
          Length = 374

 Score = 37.0 bits (84), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 126/280 (45%), Gaps = 34/280 (12%)

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK--TNG 145
           +++ ++++V    QH   V + L+   G    S L + +     S +ILS+ FL   TN 
Sbjct: 117 DIQNIINEV----QHNKWVSKMLASFGGDTQISSLISNY-----SRQILSQ-FLSVLTNV 166

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +   AS    IF+    SIIF +  L     +   + +Q + L +     Y   +  
Sbjct: 167 LTSVTSIASALISIFV----SIIFSMYVL----ANKEKLGRQFNLLIDTYLGKYSGTVHY 218

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGS----AYWLAGVPSHVALGVITAIMAMIP-GGAPI 260
           +V  ++ S F G  +    E ++LG+       L  +P    +G++ A  A+IP  GA I
Sbjct: 219 LV-GILHSRFHGFFVGQTLEAMILGTLTAIGMMLFNLPYAATIGILIAFTALIPVVGAYI 277

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGG 319
             T  +I +L +   F+   +FL   I L   +   + P +VG  I LP +     +  G
Sbjct: 278 GVTIGTILILTQS--FSQAVVFLVFVILLQQFEGNVIYPRVVGSSIGLPSMWVLLAITIG 335

Query: 320 VRTMGLLGLFIG-PVLMALIAVIWKESI---MAIKENKEK 355
               GL+G+ +  P+L +L  +I K+ +      K ++EK
Sbjct: 336 GALAGLVGMLMAVPILASLYQII-KDHVYQKQTQKASQEK 374


>gi|238792094|ref|ZP_04635730.1| permease perM [Yersinia intermedia ATCC 29909]
 gi|238728725|gb|EEQ20243.1| permease perM [Yersinia intermedia ATCC 29909]
          Length = 362

 Score = 37.0 bits (84), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 121/271 (44%), Gaps = 44/271 (16%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGF-TSWP---IYSSFISKKEE 57
           R    +PQ I   +I+ +    LYF  G  AP+L+A+++ +   WP   +     S+   
Sbjct: 18  RRRFTDPQVIALLVILLVGFCILYFFSGILAPLLAAIVLAYLLEWPTARLQRIGCSRPWA 77

Query: 58  SSTFLAVIATVSVMCLFIV-PLLFLFYYGML-EMKELVSKVVLANQHGIPVP-RWLSDIP 114
           +S  L +   ++++ +F+V P ++     ++ +M ++++K    N     +P R+ + + 
Sbjct: 78  ASIVLVIFGGITLLAVFVVAPTVWQQGNNLISDMPKMLNKF---NAFAQTLPSRYPALVD 134

Query: 115 GG---MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
            G   M A  L +K       L  + E+ +K +        AS  G++ L   + +I + 
Sbjct: 135 AGIVDMMAENLRSK-------LSGMGESVVKIS-------LASLIGLLTL--AIYLILVP 178

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFP-------AYWKKISRIVPKVIRSTFLGMTIIAIG 224
           + LFF  +D     +Q+ +    + P         W ++++ +   IR   L M I+ I 
Sbjct: 179 LMLFFLLKD----KEQMLNAVRRILPRNRGLAGQVWLEMNQQITNYIRGKVLEMVIVGIA 234

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
             LV    +++ G+   + L V+     +IP
Sbjct: 235 TYLV----FFVMGMNYALLLAVLVGFSVLIP 261


>gi|219669593|ref|YP_002460028.1| hypothetical protein Dhaf_3575 [Desulfitobacterium hafniense DCB-2]
 gi|219539853|gb|ACL21592.1| protein of unknown function UPF0118 [Desulfitobacterium hafniense
           DCB-2]
          Length = 344

 Score = 37.0 bits (84), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 8/149 (5%)

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
           W+++ + +  ++RS   G  I+A+  G++ G    L G+   + +GVI  +  +IP   P
Sbjct: 189 WQRVVQDISHIVRSFIRGNVIVALIVGILTGVGVKLVGMDYALLIGVICGVFDLIPYFGP 248

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK----TLRPFLVGGPIKLPFLPTFFG 315
           +     S+ L     +  +  + L  AI + IV +     + P L+G  + L  L   F 
Sbjct: 249 LIGAVPSVLL----GLIQSPMMALKVAIVILIVQQLESSIISPKLMGDSVGLHPLWIIFA 304

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L+ G    G  G+       A++ VI + 
Sbjct: 305 LLAGGEIAGFWGMLFAVPFAAVLRVIIRH 333


>gi|269926458|ref|YP_003323081.1| protein of unknown function UPF0118 [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269790118|gb|ACZ42259.1| protein of unknown function UPF0118 [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 438

 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 79/366 (21%), Positives = 146/366 (39%), Gaps = 45/366 (12%)

Query: 1   MRETMLNPQG--IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES 58
           MRE     +   I  W+ + +IL  L+       P + A++  +   P+ S F+S++   
Sbjct: 1   MREIRFTKRAKEITIWISIAVILYFLHSTAHLLTPFIWAIVATYIFHPLVS-FLSRESGV 59

Query: 59  ST-------FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS 111
                    ++A  + V+   + +VP++                + LANQ    VP  L+
Sbjct: 60  PRAIWIILLYIAAFSAVAWSLINVVPII------------RDQSLALANQ----VPYILN 103

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETF--LKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
            I G +  +++  +       LK L      L  N  D+  R A     + +D  +    
Sbjct: 104 QIEGIINRNQML-REWGISVDLKQLESQVVALSDNFADYARRMAVPILTVVIDKAVKFFI 162

Query: 170 MIIALFFFYRDGFSISQQLDSLG----EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
            ++A FF       I   L         H      ++I+  +   +RS  + + I+ I  
Sbjct: 163 FLVATFFLLLHADHIKSSLLEFTPAPYRHEIENLLRRINDTLGAYLRSQLILLAIMTIAT 222

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF--TAVSIYLLIKGNIFNATCLFL 283
            + L + +    V   + LGV+T  + +IP   P +    AVS+ L      F  +   L
Sbjct: 223 WIFLSAIH----VQYALLLGVLTGFLELIPIIGPYTAGGIAVSVALFQSNPPFGWSNFTL 278

Query: 284 WGAIEL--FIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
              + L  FI+    D  + PFL+G  + L  +   F ++ G    G+LGL I   + ++
Sbjct: 279 AAVVALGYFILRQLEDNLVIPFLIGRVVHLNPIIVIFFIMAGASYGGILGLLIAVPIASV 338

Query: 338 IAVIWK 343
           + +I +
Sbjct: 339 LRIIAQ 344


>gi|294635431|ref|ZP_06713920.1| permease, PerM family [Edwardsiella tarda ATCC 23685]
 gi|291091200|gb|EFE23761.1| permease, PerM family [Edwardsiella tarda ATCC 23685]
          Length = 356

 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 57/273 (20%), Positives = 115/273 (42%), Gaps = 48/273 (17%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGF-TSWPIYSSFISKKEE--- 57
           R    +PQ I    I+ +    +YF  G  AP+L A+++ +   WP      + K E   
Sbjct: 7   RRRFTDPQAIALLTILLVGFCIIYFFNGILAPLLVAIVLAYLLEWP------TNKLEGIG 60

Query: 58  -------SSTFLAVIATVSVMCLFIVPLLFLFYYGML-EMKELVSKVVLANQHGIPVPRW 109
                      L  I  V V  L ++P+++    G++ +M ++V++     ++   +PR 
Sbjct: 61  CSRIWAVCVVLLVFIGIVLVTMLVLIPIVWQQGLGLMGDMPKMVTRF---YEYAATLPR- 116

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
               P  M A  +     +    + ++ E+ LK +        AS  GM+ L   L ++ 
Sbjct: 117 --RYPALMDAGIIDVVVENLRARMALMGESVLKFS-------LASLVGMVTLAIYLVLVP 167

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFP-------AYWKKISRIVPKVIRSTFLGMTIIA 222
           +++  FF  +D     Q L++L   + P         W ++++ +   IR   + M ++ 
Sbjct: 168 LMV--FFLLKDK---EQMLNAL-RRVLPRERGLAGQVWLEMNQQITNYIRGKVVEMIVVG 221

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +   LV    + + G+   + L V+  +  +IP
Sbjct: 222 VATYLV----FLILGLNYGLLLAVLVGVSVLIP 250


>gi|75761648|ref|ZP_00741597.1| Hypothetical membrane spanning protein [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228902918|ref|ZP_04067059.1| hypothetical protein bthur0014_40860 [Bacillus thuringiensis IBL
           4222]
 gi|74490869|gb|EAO54136.1| Hypothetical membrane spanning protein [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228856702|gb|EEN01221.1| hypothetical protein bthur0014_40860 [Bacillus thuringiensis IBL
           4222]
          Length = 361

 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 78/184 (42%), Gaps = 27/184 (14%)

Query: 188 LDSLGE--HLF----PAYWKKISRIVPKVIR----STFLGMTIIAIGEGLVLGSAYWLAG 237
           L   GE  H+F    P+ W+   +++ K I     S   G   + +  G V   ++W  G
Sbjct: 185 LKDYGEFYHIFWKLVPSKWRGTGQMLAKEIDKSLGSYIRGQLFVCLVLGGVSALSFWFIG 244

Query: 238 VPSHVALGVITAIMAMIP------GGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIEL 289
           +   + LG+I  +  +IP      G  P    A  VS  LLIK  I  A        I  
Sbjct: 245 MKYPLLLGIIIGVTDIIPYFGPILGAIPTLMIAATVSTSLLIKAGITIA--------ILQ 296

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMA 348
           F+    L P++VG  +++  +     L+ G    G++GL I  P+L  +  VI     + 
Sbjct: 297 FVESNILSPYIVGKSLRMHPVIIMLALLVGGEVAGIVGLLISVPILAVIRTVIVHVKPLL 356

Query: 349 IKEN 352
            KE+
Sbjct: 357 KKED 360


>gi|118086653|ref|XP_419042.2| PREDICTED: similar to chromosome 9 open reading frame 5 [Gallus
           gallus]
          Length = 901

 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 80/204 (39%), Gaps = 37/204 (18%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW----------KKISRI 206
           G   L++ LS++  +  LF+           L S  E+  P  W             S I
Sbjct: 671 GTALLNFVLSVVIFLTTLFYL----------LSSSDEYYKPVKWVISLTPLSQPGPSSNI 720

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV----ITAIMAMIPGGAP--- 259
           V + +     G+   ++      G   WL    +H   G+    I + +A I G  P   
Sbjct: 721 VGQSVEEAIRGVFDASLKMAGFYGLYTWL----THTIFGINIVFIPSALAAILGAVPFLG 776

Query: 260 ---ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
               +  AV    L++G    A  L ++  +  + VD  +   + GG    P+L T   +
Sbjct: 777 TYWAAIPAVLDLWLVQGEGCKAILLLVFHLLPTYFVDTAIYSDISGG--GHPYL-TGLAV 833

Query: 317 VGGVRTMGLLGLFIGPVLMALIAV 340
            GG   +GL G  IGP+L+ ++ V
Sbjct: 834 AGGAYYLGLEGAIIGPILLCILVV 857


>gi|302527288|ref|ZP_07279630.1| predicted protein [Streptomyces sp. AA4]
 gi|302436183|gb|EFL07999.1| predicted protein [Streptomyces sp. AA4]
          Length = 405

 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 17/152 (11%)

Query: 200 WKKISRIVPKVIRS--------------TFLGMTI-IAIGEGLVLGSAYWLAGVPSHVAL 244
           W  + +IVP   R               +++  T+ +A  + + +G   WL GVP  V L
Sbjct: 197 WHFLLKIVPSATRDEIDVAGRRGFASLVSYVRATVAVACVDAVCIGLGIWLVGVPLAVPL 256

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK-TLRPFLVGG 303
             +  I A IP    +   AV++ + +  N F A  + L   + +  ++   L+PFL+G 
Sbjct: 257 AALIFIGAFIPILGAVVTGAVAVLIALVANGFVAAGIVLAIVVAVMQLESHVLQPFLLGR 316

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVL 334
            ++L  L    G+  G+   G++G  +  P+L
Sbjct: 317 AVRLHPLAVVLGIALGLEIAGIVGALLAVPIL 348


>gi|229013801|ref|ZP_04170929.1| Sporulation integral membrane protein YtvI [Bacillus mycoides DSM
           2048]
 gi|229169323|ref|ZP_04297033.1| Sporulation integral membrane protein YtvI [Bacillus cereus AH621]
 gi|228614086|gb|EEK71201.1| Sporulation integral membrane protein YtvI [Bacillus cereus AH621]
 gi|228747470|gb|EEL97345.1| Sporulation integral membrane protein YtvI [Bacillus mycoides DSM
           2048]
          Length = 365

 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 80/185 (43%), Gaps = 10/185 (5%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
           ++F+++A FF   D   ++ ++  L  +    Y K I   + K +         +     
Sbjct: 172 LVFVLLATFFISYDWHRLAHKVRKLLPNRLHGYGKTIFVDLRKALFGFVKAQLTLVSMTT 231

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           +++     +  VP  + + +IT ++ ++P  G    F    IY+   G+       F  G
Sbjct: 232 IIVLIGLLILRVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGD-----TAFAIG 286

Query: 286 AIELFIV----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            + L+IV     + + P ++   I L  L T   L  G +  G LGL IGPV++ L+  +
Sbjct: 287 LLILYIVVIVQRQIMEPKVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVILVLLNTL 346

Query: 342 WKESI 346
            K  +
Sbjct: 347 HKAHV 351


>gi|229098862|ref|ZP_04229798.1| hypothetical protein bcere0020_40860 [Bacillus cereus Rock3-29]
 gi|229117887|ref|ZP_04247249.1| hypothetical protein bcere0017_41570 [Bacillus cereus Rock1-3]
 gi|228665544|gb|EEL21024.1| hypothetical protein bcere0017_41570 [Bacillus cereus Rock1-3]
 gi|228684535|gb|EEL38477.1| hypothetical protein bcere0020_40860 [Bacillus cereus Rock3-29]
          Length = 361

 Score = 37.0 bits (84), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 26/172 (15%)

Query: 188 LDSLGE--HLF----PAYWKKISRIVPKVIR----STFLGMTIIAIGEGLVLGSAYWLAG 237
           L   GE  H+F    P+ W+   +++ K I     S   G   + +  G V   ++W  G
Sbjct: 185 LKDYGEFYHIFWKLVPSKWRSTGQMLAKEIDKSLGSYIRGQLFVCLVLGGVSVLSFWFIG 244

Query: 238 VPSHVALGVITAIMAMIP------GGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIEL 289
           +   + LG+I  +  +IP      G  P    A  VS  LLIK  I  A   FL   I  
Sbjct: 245 MKYPLLLGIIIGVTDIIPYFGPILGAIPTLMIAATVSTSLLIKAGITIAILQFLESNI-- 302

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                 L P++VG  +++  +     L+ G    G++GL I   ++A+I  +
Sbjct: 303 ------LSPYIVGKSLRMHPVIIMLALLVGGEIAGIVGLLISVPILAVIRTV 348


>gi|187920328|ref|YP_001889359.1| hypothetical protein Bphyt_5642 [Burkholderia phytofirmans PsJN]
 gi|187718766|gb|ACD19989.1| protein of unknown function UPF0118 [Burkholderia phytofirmans
           PsJN]
          Length = 361

 Score = 37.0 bits (84), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 48/251 (19%), Positives = 105/251 (41%), Gaps = 14/251 (5%)

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILS--ETFLKTNGIDFIPRFASRFGMIFLDYCLSII 168
           SD+P     + +   H   P   +I+      ++T     +P  A   G+  +    ++I
Sbjct: 105 SDVP-----NRIPLPHFLEPLRERIVDFVRGQIETGSDKAVP-MARSVGLGVMHAASNLI 158

Query: 169 FMI---IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           +++   I  F   ++G  + +    L        W +I   +  ++      +  +++  
Sbjct: 159 YLVLIPILSFLLIKEGPQMREDFLDLLNDRHRTLWAEIVTDLNVLLSKYVRALLFLSLAT 218

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
            +  G A+ L GVP    L V   ++  +P   P+   A+++ + +     +   L ++ 
Sbjct: 219 LICYGMAFSLLGVPYAFLLAVSAGLLEFVPFAGPLGAVAITLVVAVFSGYPHLLWLVIFI 278

Query: 286 AIELFIVDKTLRPFLVGGPIKL-PFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWK 343
           A+     D  L P+L+   +++ PFL    GL+ G +  G+ G+F+  PV+  L  +I +
Sbjct: 279 ALYRLFQDYVLNPYLMSEGVEVSPFL-VIVGLLAGDQLGGVAGIFLAVPVIAMLKIIIGR 337

Query: 344 ESIMAIKENKE 354
             +     + E
Sbjct: 338 ARVFYAASHDE 348


>gi|290968827|ref|ZP_06560364.1| putative membrane protein [Megasphaera genomosp. type_1 str. 28L]
 gi|290781123|gb|EFD93714.1| putative membrane protein [Megasphaera genomosp. type_1 str. 28L]
          Length = 359

 Score = 37.0 bits (84), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 111/246 (45%), Gaps = 34/246 (13%)

Query: 126 HLSHPQSLK-ILSETFLKTN--GIDFIPRFASRFGMI---FLDYCLSIIFMIIALFFFYR 179
           H+  P+ +K +++E  +K    G+D I        +I    +++C+ + F+    F+F +
Sbjct: 121 HVYIPEQVKQLINEALVKAGNYGVDSITNVVKSVVVIAGTVVEFCV-VPFIT---FYFMK 176

Query: 180 DGFSISQQLDSLGEHLFPAYWK--------KISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
           DG  + Q   S+    FP  ++        +I R++ + IR   +   IIA   G++   
Sbjct: 177 DGAHLVQSFISI----FPPTYRPRLEGIAGEIHRVLSRYIRGQIILSCIIA---GVIF-C 228

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIEL 289
             W+ GVP  + +G++ AI   IP   PI     +I L   + G++  A  + ++  I  
Sbjct: 229 GMWIMGVPYPMVIGLLAAITEWIPIVGPIVGAVPAILLGATVSGSL--ALKVLIFYVIVQ 286

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF----IGPVLMALIAVIWKES 345
            +    + P ++G  I+L  +     L+ G   MG+ G+     I  VL  L + +W   
Sbjct: 287 QMDSHVIMPQVMGAVIRLHPVVIIISLLIGGTLMGVAGMILTVPITAVLQILCSHLWFYE 346

Query: 346 IMAIKE 351
           +   KE
Sbjct: 347 LYKDKE 352


>gi|209520430|ref|ZP_03269191.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
 gi|209499122|gb|EDZ99216.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
          Length = 364

 Score = 37.0 bits (84), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 107/244 (43%), Gaps = 18/244 (7%)

Query: 126 HLSHPQSLKILS--ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI---IALFFFYRD 180
           H   P   +I+    + ++T     +P  A   G+  +    ++I+++   I  F   +D
Sbjct: 115 HFLEPLRERIVDFVRSQIETGSDKAVP-LARSVGLGVVHAASNVIYLVLIPILSFLLIKD 173

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +     +L        W +I   V  ++      +  +++   L  G A+ L GVP 
Sbjct: 174 GEQMRDAFLALLNRPHRTLWSEIVVDVNVLLSKYVRALLFLSLATLLCYGVAFSLLGVPY 233

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLW-----GAIELFIVDKT 295
              L V  A++  +P   P++  A++I L++   +F+     LW     G   LF  D  
Sbjct: 234 AFLLAVSAALLEFVPFAGPLA--AIAITLVVA--VFSGYPHLLWLLIFIGLYRLF-QDYV 288

Query: 296 LRPFLVGGPIKL-PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L P+L+   +++ PFL    GL+ G +  G+ G+F+   ++A + ++   + M   E  E
Sbjct: 289 LNPYLMSEGVEVSPFL-VIVGLLAGDQLGGVAGIFLAVPVIATLKIVVGRARMFYAELHE 347

Query: 355 KISS 358
             ++
Sbjct: 348 HDAA 351


>gi|160940895|ref|ZP_02088235.1| hypothetical protein CLOBOL_05787 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436139|gb|EDP13906.1| hypothetical protein CLOBOL_05787 [Clostridium bolteae ATCC
           BAA-613]
          Length = 251

 Score = 37.0 bits (84), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC 280
           IA G GL+   AY +AGVP+HVALG      AM   G  +S   ++ +  +KG +  A C
Sbjct: 20  IAGGGGLIALPAYLIAGVPAHVALGTNKLSSAM---GTTVSTARLAKHGFLKGKVLMAVC 76


>gi|89895168|ref|YP_518655.1| hypothetical protein DSY2422 [Desulfitobacterium hafniense Y51]
 gi|89334616|dbj|BAE84211.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 344

 Score = 37.0 bits (84), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 8/149 (5%)

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
           W+++ + +  ++RS   G  I+A+  G++ G    L G+   + +GVI  +  +IP   P
Sbjct: 189 WQRVVQDISHIVRSFIRGNVIVALIVGILTGVGVKLVGMDYALLIGVICGVFDLIPYFGP 248

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK----TLRPFLVGGPIKLPFLPTFFG 315
           +     S+ L     +  +  + L  AI + IV +     + P L+G  + L  L   F 
Sbjct: 249 LIGAVPSVLL----GLIQSPMMALKVAIVILIVQQLESSIISPKLMGDSVGLHPLWIIFA 304

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L+ G    G  G+       A++ VI + 
Sbjct: 305 LLAGGEIAGFWGMLFSVPFAAVLRVIIRH 333


>gi|229192602|ref|ZP_04319563.1| hypothetical protein bcere0002_42530 [Bacillus cereus ATCC 10876]
 gi|228590909|gb|EEK48767.1| hypothetical protein bcere0002_42530 [Bacillus cereus ATCC 10876]
          Length = 361

 Score = 37.0 bits (84), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 26/172 (15%)

Query: 188 LDSLGE--HLF----PAYWKKISRIVPKVIR----STFLGMTIIAIGEGLVLGSAYWLAG 237
           L   GE  H+F    P+ W+   +++ K I     S   G   + +  G V   ++W  G
Sbjct: 185 LKDYGEFYHIFWKLVPSKWRGTGQMLAKEIDKSLGSYIRGQLFVCLVLGGVSALSFWFIG 244

Query: 238 VPSHVALGVITAIMAMIP------GGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIEL 289
           +   + LG+I  +  +IP      G  P    A  VS  LLIK  I  A        I  
Sbjct: 245 MKYPLLLGIIIGVTDIIPYFGPILGAIPTLMIAATVSTSLLIKAGITIA--------ILQ 296

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           F+    L P++VG  +++  +     L+ G    G++GL I   ++A+I  +
Sbjct: 297 FVESNILSPYIVGKSLRMHPVIIMLALLVGGEVAGIVGLLISVPILAVIRTV 348


>gi|14590842|ref|NP_142914.1| hypothetical protein PH1000 [Pyrococcus horikoshii OT3]
 gi|8928493|sp|O58728|YA00_PYRHO RecName: Full=UPF0118 membrane protein PH1000
 gi|3257414|dbj|BAA30097.1| 355aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 355

 Score = 37.0 bits (84), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 61/113 (53%), Gaps = 4/113 (3%)

Query: 235 LAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWG-AIELFI 291
           ++ +P+ +  G++T + + IP   G  I + A + YL+ +G+I     L ++G  +   +
Sbjct: 233 VSNLPTAILAGLLTVLFSFIPLFEGWMI-WLAGAFYLVKQGHIIAGIGLAVYGFTLVSPL 291

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            D T+RP LV    +   +    G++GG   +GL GL IGP+++ +   + +E
Sbjct: 292 PDFTIRPKLVAREAEFNDVLVLIGMIGGTWGLGLKGLIIGPIVLNVAIEMLRE 344


>gi|313618959|gb|EFR90805.1| membrane protein YdbI [Listeria innocua FSL S4-378]
          Length = 345

 Score = 37.0 bits (84), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 14/155 (9%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
           KVI + F    IIA+   ++   A W+ G P  + L ++  ++ +IP  G  IS   ++I
Sbjct: 197 KVIEAQF----IIALVNAVLTTIALWILGFPQLMTLSIMVFLLGLIPVAGVIISLIPLTI 252

Query: 268 YLLIKGNI----FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
                G +    +    + +  A+E ++    L P L+     LP   TF  L+ G    
Sbjct: 253 IGYSIGGVEYIFYILVVVIIIHALESYV----LNPKLMSAKTNLPVFYTFIILIFGEHFF 308

Query: 324 GLLGLFIG-PVLMALIAVIWKESIMAIKENKEKIS 357
           G+ GL +G PV+M  + V+   +   + + K+ IS
Sbjct: 309 GIWGLIVGIPVVMFFLDVLGVTNQEEVNQPKDIIS 343


>gi|262373133|ref|ZP_06066412.1| PerM family permease [Acinetobacter junii SH205]
 gi|262313158|gb|EEY94243.1| PerM family permease [Acinetobacter junii SH205]
          Length = 397

 Score = 37.0 bits (84), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 113/266 (42%), Gaps = 28/266 (10%)

Query: 111 SDIPGGM-WASEL---WTKHLSHPQSLKILSE-------TFLKTN-GIDFIPRFASRF-- 156
             IP G+ W +     W  H  +   ++I +E        +++TN   D I   A R   
Sbjct: 91  DSIPAGIHWINATFLPWVSHTFNVVPMEIDTEQLSKAVMDYIQTNYSADSIQTMALRVAQ 150

Query: 157 -GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
            G+ F+     +I + I  F+F  D   +   L  L    + A    I R    V+ +  
Sbjct: 151 SGLNFIQLGGIVILIPIIAFYFLLDWERMLDSLRRLIPRPYEASTLTIVRECHSVLGAFV 210

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGN 274
            G  ++ +  G+V      L G+   + +G++  + ++IP  G  +   A  I  L +  
Sbjct: 211 KGQFLVMLLLGIVYAVGLQLIGLEVGLIIGMVAGLASIIPYLGFGVGIIAAVIATLFQFG 270

Query: 275 IFNATCLFLWGAIELFIVDKT-----LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           I +   L L G +  F++ +      L+PFL+G  I L  +   F ++ G +  G LG+ 
Sbjct: 271 I-DWMQLLLVGVV--FMIGQMVEGYILQPFLLGDKIGLSPVAVVFAVLAGAQLGGFLGML 327

Query: 330 IGPVLMALIAVIWKESIMAIKENKEK 355
           I   + A+I V+ K +    + N E+
Sbjct: 328 IALPVAAVIVVLLKHA----RNNYER 349


>gi|295397118|ref|ZP_06807227.1| possible permease [Aerococcus viridans ATCC 11563]
 gi|294974643|gb|EFG50361.1| possible permease [Aerococcus viridans ATCC 11563]
          Length = 353

 Score = 37.0 bits (84), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 27/218 (12%)

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
           RF S  G  FLD    II   I  F++ +D   I + +         A  K++   V KV
Sbjct: 152 RFVSYTGT-FLD----IIITPIITFYYLKDKDRIMKAITGEIPVKRLAKAKELGGEVDKV 206

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           +     G   +A   G++ G   W+ GVP  + +G++  I  +IP   P     + + L 
Sbjct: 207 LGGFIKGQLTVAGFVGILTGMGCWIIGVPYSLTIGLVAGITNIIPYFGPWIGGVLPVIL- 265

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFL--------VG-GPIKLPFLPTFFGLVGGVR 321
                  +  + LW  + + ++ +    FL        VG  P+ + F   FFG      
Sbjct: 266 ---AFMESPIMALWVTMLIVVIQQVESAFLSPQIMSHSVGLHPLLVIFSVLFFG-----N 317

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            +G+LG+ IG  LM L+ +    ++  +KE + +I S 
Sbjct: 318 MLGILGMIIGVPLMGLLKI----ALRYLKEFRSEIDSK 351


>gi|197335961|ref|YP_002155739.1| hipothetical membrane protein [Vibrio fischeri MJ11]
 gi|197317451|gb|ACH66898.1| hipothetical membrane protein [Vibrio fischeri MJ11]
          Length = 353

 Score = 37.0 bits (84), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 68/146 (46%), Gaps = 6/146 (4%)

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
           GEH      + ++ +    +RS   G+  +A+ + ++ G      GVP+     ++  ++
Sbjct: 198 GEH-----GEALTTLSKTTVRSVVQGVIGVAVIQSVMAGLGMAFVGVPAIGLWMLLVMLI 252

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           A+I     ++   V +Y+        A    +W  I +   D  L+P L+    + P L 
Sbjct: 253 AIIQLPPILALLPVILYVFSVDTTTTAVLFLIW-CIVVSGSDAILKPMLLSRGSETPMLV 311

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMAL 337
              G +GG+   G++GLF+G V+++L
Sbjct: 312 ILLGALGGMAMSGIVGLFVGAVILSL 337


>gi|320114881|ref|YP_004185040.1| sporulation integral membrane protein YtvI [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|319927972|gb|ADV78657.1| sporulation integral membrane protein YtvI [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 354

 Score = 37.0 bits (84), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 47/235 (20%), Positives = 101/235 (42%), Gaps = 20/235 (8%)

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI-------IFMIIALFFFY 178
           ++S P ++  L E+ +++  ++++  FA       L++   +       +  ++A FF  
Sbjct: 123 YISLPPNITSLIESNMQS-ILNYVSLFAKNLATWLLNFATKLPNFFFMTLITLVATFFIS 181

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG----MTIIAIGEGLVLGSAYW 234
           +D     Q +    +   P++W + ++ +   +  TF G    +  I +   L +     
Sbjct: 182 KD----KQLILDFIKRQIPSHWAQHAKSIQVNLLKTFFGYLRAVATIMLITFLEVSIGLA 237

Query: 235 LAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           + G      LG++  I+  +P  G   +        +++K  +     L L+G +   +V
Sbjct: 238 MIGFDYPFLLGLLVTIVDALPVLGSGAVMVPWALYNIIMKNYMVGIYLLILYGLV--VVV 295

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            + + P +VG  I L  L T   +  G +  G LGL IGPV + +   + +  I+
Sbjct: 296 RQIIEPKIVGQSIGLHPLVTLLSMFIGAKLFGALGLIIGPVFVVVFKALQRAEII 350


>gi|293379019|ref|ZP_06625173.1| putative membrane protein [Enterococcus faecium PC4.1]
 gi|292642361|gb|EFF60517.1| putative membrane protein [Enterococcus faecium PC4.1]
          Length = 334

 Score = 37.0 bits (84), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 20/178 (11%)

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           L F ++DG      +D+L  H FP   +K  R   K +  T        I + L++G   
Sbjct: 136 LLFMFKDGHKF---IDALS-HFFPKAIRKELRQTVKELNETLSAYISSTILDALIIGVMS 191

Query: 234 WLA----GVPSHVALGVITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAI 287
           +LA      P  + L VI  I  +IP   P   +  A+ + L I    F A    L+ A+
Sbjct: 192 FLAMRIFNQPYSLLLAVICGITNIIPYVGPFIGAVPAIIVGLFISP--FQA----LYMAL 245

Query: 288 ELFIVDKT----LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            + ++ +     ++P L G  + +  L     L+G     G+LG+ I   + A+I  I
Sbjct: 246 SILVIQQLDGNLIKPLLFGKSMNIHPLTIILVLIGAGSVAGILGMLICIPVYAVIKTI 303


>gi|104773700|ref|YP_618680.1| hypothetical protein Ldb0590 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116513697|ref|YP_812603.1| permease [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|103422781|emb|CAI97420.1| Conserved hypothetical membrane protein [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116093012|gb|ABJ58165.1| Predicted permease [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|325125348|gb|ADY84678.1| Putative permease [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 378

 Score = 37.0 bits (84), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 2/169 (1%)

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           LFF  +DG  +   L       +     K+   V + + S  +G   +AI  G++    Y
Sbjct: 192 LFFMLKDGHKLRPFLVKFAPQRWEQATSKLLHEVNQAVSSYVIGQVSVAICVGIMFFIGY 251

Query: 234 WLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            + G P   AL +    + +IP  GA I      I  L+      A  L ++  IE  I 
Sbjct: 252 TIIGEPYGAALAICAGFLNLIPYFGAFIGLIPALIIALVTDLPMVAKVLVVF-FIEQIIE 310

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            + + P +VG  +K+    T   ++G     GL G+  G  + A++ ++
Sbjct: 311 TRVISPLVVGNRLKMHPATTIIVMLGAGSVWGLWGVIGGIPIYAVMKIL 359


>gi|253997933|ref|YP_003049996.1| hypothetical protein Msip34_0220 [Methylovorus sp. SIP3-4]
 gi|313199998|ref|YP_004038656.1| hypothetical protein MPQ_0231 [Methylovorus sp. MP688]
 gi|253984612|gb|ACT49469.1| protein of unknown function UPF0118 [Methylovorus sp. SIP3-4]
 gi|312439314|gb|ADQ83420.1| conserved hypothetical protein [Methylovorus sp. MP688]
          Length = 359

 Score = 37.0 bits (84), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 85/200 (42%), Gaps = 7/200 (3%)

Query: 147 DFIPRFA---SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           DF+ +F    S  G+    +  +++ + I LF+  RD   I  + D L    + A   +I
Sbjct: 144 DFVGKFLLALSDHGLALFAWLANLVLIPIVLFYLLRDWHDILNRFDQLLPRRWYAKTVEI 203

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG---GAPI 260
           +R V  ++     G   + +       +  WL+G+   + +G+I  ++  +P    G  +
Sbjct: 204 AREVDMMLAEFLRGQLSVMLLMSAFYATGLWLSGLELALPIGLIAGLLGFVPYLGIGTGM 263

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
              A++  L           + ++G I   +    L P+LVG  I L  +   F L+ G 
Sbjct: 264 LLAALASVLQFTTFAQYVPVIAVFG-IGQMLESMWLTPWLVGDRIGLHPVMVIFALLAGG 322

Query: 321 RTMGLLGLFIGPVLMALIAV 340
           +  G  G+ +   + A IAV
Sbjct: 323 QLFGFTGILLALPVSAAIAV 342


>gi|229062280|ref|ZP_04199601.1| Sporulation integral membrane protein YtvI [Bacillus cereus AH603]
 gi|228717008|gb|EEL68689.1| Sporulation integral membrane protein YtvI [Bacillus cereus AH603]
          Length = 365

 Score = 37.0 bits (84), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 10/114 (8%)

Query: 238 VPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV---- 292
           VP  + + +IT ++ ++P  G    F    IY+   G+       F  G + L+IV    
Sbjct: 243 VPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGD-----TAFAIGLLILYIVVIVQ 297

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            + + P ++   I L  L T   L  G +  G LGL IGPV++ L+  + K  +
Sbjct: 298 RQIMEPKVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVILVLLNTLHKAHV 351


>gi|254481300|ref|ZP_05094545.1| conserved domain protein, putative [marine gamma proteobacterium
           HTCC2148]
 gi|214038463|gb|EEB79125.1| conserved domain protein, putative [marine gamma proteobacterium
           HTCC2148]
          Length = 360

 Score = 37.0 bits (84), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 79/379 (20%), Positives = 155/379 (40%), Gaps = 63/379 (16%)

Query: 7   NPQGIMRWMIMF----IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
            P  + RW +      +I V+LY L+   +P +   +I +   P+     S+    +  +
Sbjct: 8   EPSEVYRWPVAIALAAVICVALYLLQPILSPFVLGGLIAYLGDPLVDRLESRGVGRTLGV 67

Query: 63  AVI-----ATVSVMCLFIVPLLFLFYYGMLEMKELVSKV----VLANQHGIPVPRWLSD- 112
           A++     A +++  +F +P+L      + ++  L+SKV        Q  +P   WL   
Sbjct: 68  AIVFLLFSAIITLAIIFALPML------LHQLDALISKVPEIYRWLTQDALP---WLQQR 118

Query: 113 --IPGGMWASELWTKHLSHP-QSL-KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII 168
             IP        W+  L+   QS+ K  +++  +  G           G   L    ++ 
Sbjct: 119 LAIPERRLPQVDWSGQLADNWQSVGKFTAQSLKRITG----------SGANLLLSLANLA 168

Query: 169 FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK--------ISRIVPKVIRSTFLGMTI 220
            + +  F+  RD   +  +  +LG  + P  W++           +V   +R  FL M  
Sbjct: 169 LVPVVAFYLMRDWNLLLDK--ALG--IVPLSWQQRTSELAGEADEVVGAFLRGQFLVMCA 224

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNI-FNAT 279
           +    G +  +  WL G+   + LG+I  + +++P    + F    +  LI     FN  
Sbjct: 225 L----GAIYSAGLWLVGLQLAMLLGLIAGLSSIVP---YLGFMVGIVASLIAAYAQFNDW 277

Query: 280 CLFLWGAIELFIVDKT-----LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
            + LW  + +F V +      L P LVG  I L  +   F L+ G +  G +G+ +   +
Sbjct: 278 TMLLW-VVLVFGVGQAVESMLLTPILVGDRIGLHPVAVIFVLMAGAQVAGFVGVVLALPV 336

Query: 335 MALIAVIWKESIMAIKENK 353
            A+I V  + ++   + ++
Sbjct: 337 GAVIMVFLRHALQHYRSSE 355


>gi|154148283|ref|YP_001406674.1| transport protein [Campylobacter hominis ATCC BAA-381]
 gi|153804292|gb|ABS51299.1| transport protein [Campylobacter hominis ATCC BAA-381]
          Length = 339

 Score = 37.0 bits (84), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFN 277
           TI++   G+++GS  +   +P  V  G++  IM  IP  G+ ++        L+ GNI +
Sbjct: 196 TIVSTATGIIIGSGLYYLNIPYAVLWGIVAFIMNYIPTIGSFVAAVPAVFIALLSGNISD 255

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMA 336
           A  + +       I+   L P LVG  + +  +   F L+     +G+ GLF+  P+ M 
Sbjct: 256 AIWVIILYTATNTILGVILEPRLVGEELGISTITVLFSLLLWGYVLGIGGLFLAVPLTMT 315

Query: 337 L 337
           +
Sbjct: 316 I 316


>gi|295400285|ref|ZP_06810264.1| protein of unknown function UPF0118 [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294977560|gb|EFG53159.1| protein of unknown function UPF0118 [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 342

 Score = 37.0 bits (84), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 16/162 (9%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-- 258
           +K  R   KVI + F    IIA     +  +  W+   P    LG++   + +IP     
Sbjct: 190 RKFVRTFGKVIEAQF----IIATVNMAITVAGLWIMDFPQLFGLGILIFFLGLIPVAGVI 245

Query: 259 ----PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
               P+ F A SI     G I     + +  A+   +    L P L+     LP   TF 
Sbjct: 246 ISLFPLCFIAYSI-----GGIMKVVYILIMIAVIHALEAYVLNPKLMSSKTNLPVFYTFI 300

Query: 315 GLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKEK 355
            L+      G+ GL +G PV + ++ V+  +++   +++ ++
Sbjct: 301 VLIFSEHFFGVWGLILGIPVFVFILDVLGVKTVQGKRDDDDE 342


>gi|257899624|ref|ZP_05679277.1| conserved hypothetical protein [Enterococcus faecium Com15]
 gi|293570808|ref|ZP_06681855.1| transport protein [Enterococcus faecium E980]
 gi|257837536|gb|EEV62610.1| conserved hypothetical protein [Enterococcus faecium Com15]
 gi|291609076|gb|EFF38351.1| transport protein [Enterococcus faecium E980]
          Length = 379

 Score = 37.0 bits (84), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 20/178 (11%)

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           L F ++DG      +D+L  H FP   +K  R   K +  T        I + L++G   
Sbjct: 181 LLFMFKDGHKF---IDALS-HFFPKAIRKELRQTVKELNETLSAYISSTILDALIIGVMS 236

Query: 234 WLA----GVPSHVALGVITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAI 287
           +LA      P  + L VI  I  +IP   P   +  A+ + L I    F A    L+ A+
Sbjct: 237 FLAMRIFNQPYSLLLAVICGITNIIPYVGPFIGAVPAIIVGLFISP--FQA----LYMAL 290

Query: 288 ELFIVDKT----LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            + ++ +     ++P L G  + +  L     L+G     G+LG+ I   + A+I  I
Sbjct: 291 SILVIQQLDGNLIKPLLFGKSMNIHPLTIILVLIGAGSVAGILGMLICIPVYAVIKTI 348


>gi|330506790|ref|YP_004383218.1| hypothetical protein MCON_0564 [Methanosaeta concilii GP-6]
 gi|328927598|gb|AEB67400.1| protein of unknown function (DUF20) [Methanosaeta concilii GP-6]
          Length = 346

 Score = 37.0 bits (84), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 143/363 (39%), Gaps = 68/363 (18%)

Query: 13  RWM-----IMFIILVSLYFLKGFFAPVLSALIIG----FTSWPIYSSFISKKEESSTFLA 63
           RW      I+ + L ++     F  P L  +I+G    +   PI   F  +K+  S    
Sbjct: 7   RWCSEHKGILILALAAVLMTACFAFPFLDGIILGSVFAYVGRPIRDRFGKRKKLGSL--- 63

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA-NQH------GIPVPRWLSDIPGG 116
               V+ +C+ +VP+  +   G LE+   +  + LA NQ       G  + +  +D+P  
Sbjct: 64  ----VAAICV-VVPIFLMLGLGSLEVATQI--IALAKNQEALRYWLGYLMQQTATDLPS- 115

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL-- 174
            WA E     LS  ++   L  +   +  I  I R AS          L II  +I+   
Sbjct: 116 -WARE---SLLSGLENAFGLIASLAASIPILQIGRMAS----------LGIINFLISFPI 161

Query: 175 -FFFYRDGFSISQQLDSL---GE-HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
            +F   DG      L SL   GE  +   Y  +I RI    +   F+G    +I   L+ 
Sbjct: 162 CYFILLDGEGFVGSLISLLPDGEMRVLERYIDRIDRI----LSGIFIGTVYTSIVGSLIA 217

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
              ++L  +P  +AL  I  I  M+P          S  +L+   ++    + L GA+  
Sbjct: 218 AVIFFLFDIPRPIALASIVFIAGMVP-------VLTSWAVLVPLAVYRYFTVGLEGALFF 270

Query: 290 FIVDKTL---------RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            ++   L         RP+++     L  L       GG    G+ G F+ P ++  I+ 
Sbjct: 271 LVISSALIYLPSELFIRPYIISTRSSLHPLLVMLSFFGGALVAGIGGFFLAPAVIGAISG 330

Query: 341 IWK 343
           I++
Sbjct: 331 IYQ 333


>gi|319651659|ref|ZP_08005786.1| hypothetical protein HMPREF1013_02398 [Bacillus sp. 2_A_57_CT2]
 gi|317396726|gb|EFV77437.1| hypothetical protein HMPREF1013_02398 [Bacillus sp. 2_A_57_CT2]
          Length = 362

 Score = 36.6 bits (83), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 94/236 (39%), Gaps = 34/236 (14%)

Query: 141 LKTNGIDFIPRFASRFGMIF----------LDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           L+T   DFI     R   +           L+Y + I  +    F+  +D FSI ++   
Sbjct: 131 LQTRIDDFIVAVEKRLNNLLSKVITFFLNVLNYAVIIAVIPFISFYLLKD-FSIMKKA-- 187

Query: 191 LGEHLFPAYWKKIS----RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
              +L P  W+K      R V K + S   G  ++    G +    +W+  +   + LG 
Sbjct: 188 -AWYLTPRKWRKEGVLFLRDVDKSLGSYIRGQLLVCAAIGAISSLLFWIFDMRYPLLLGT 246

Query: 247 ITAIMAMIP------GGAP--ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           I  +  +IP      G  P  I  +A+S+ +++          FL G I        L P
Sbjct: 247 IIGVTNVIPYFGPIIGAVPAVIIASALSVKMIVITIGIIIVLQFLEGNI--------LSP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            +VG  + +  L     L+ G    G+LGL I   ++A+I V    +     +NK+
Sbjct: 299 LIVGKSLHMHPLLIMLALLAGGEAAGILGLIIAVPILAVIKVSIIHAKKHFSKNKQ 354


>gi|315453202|ref|YP_004073472.1| outer membrane protein [Helicobacter felis ATCC 49179]
 gi|315132254|emb|CBY82882.1| Outer membrane protein [Helicobacter felis ATCC 49179]
          Length = 353

 Score = 36.6 bits (83), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 63/305 (20%), Positives = 131/305 (42%), Gaps = 33/305 (10%)

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM--LEMKELVSKVVLANQHGIPVPRWLS 111
            K     F +++  V ++   ++PL F+ +  +  L    L       N+    V  +L 
Sbjct: 47  DKYMRDLFSSLLCVVVLLSFLVIPLYFIIHQSVDFLSHINLEKLSFFFNKFKADVLIFLD 106

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
             P     ++ +  HLS  QS+            + ++ RF+S  G   L      + ++
Sbjct: 107 RFPAINTDAKNFISHLS-AQSI------------MSYVLRFSSDIGKYSLKLASDTVMVL 153

Query: 172 IALF--FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
           + LF  FFY   F  S  L+ L      +  K I R V  ++R   L   I  + +G+  
Sbjct: 154 VFLFLCFFYGRHFY-SYILEILPFEKIQS--KGIFREVAGILRVVLLTSIINVVLQGVAF 210

Query: 230 GS-AYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
           G+   W       ++LG++  + ++IP  G  + +  V++Y + + +   A  + ++  +
Sbjct: 211 GALVVWFD--LDWLSLGILYGLASLIPIVGGSLVWIPVALYEMYRDHTTIAIVIAIYSIV 268

Query: 288 ELF-IVDKTLRPFLVGG--------PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
            +  ++D  ++P+L+G          +K+  +  FF ++ G+   G  G+ +GP + A  
Sbjct: 269 LIGGLIDSLIKPWLIGFIKHRILKISLKINEILIFFSILAGISKFGFWGIAVGPTITAFF 328

Query: 339 AVIWK 343
            V+ +
Sbjct: 329 IVLLR 333


>gi|167629939|ref|YP_001680438.1| domain of unknown function, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167592679|gb|ABZ84427.1| domain of unknown function, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 365

 Score = 36.6 bits (83), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 72/350 (20%), Positives = 143/350 (40%), Gaps = 50/350 (14%)

Query: 3   ETMLNPQGIMRWMIMF------IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           ET L P+G  RW I+       I+L+  Y L+    P   A ++ +  +P          
Sbjct: 23  ETAL-PKG--RWRILLVAGFWAIVLLLSYLLRQTLVPFAVAFVLAYLLYPGVVWL----- 74

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM-KELVSKVVLANQHGIPVPRWLSDIPG 115
           E      V++ ++V  +       L  +GM  +  EL    V   Q+   +  WL+ I  
Sbjct: 75  EKGGLSRVVSILAVFAVVFGGFASLIAFGMPRIFSELNRFSVQLPQYTQQMQAWLARIQQ 134

Query: 116 GMWAS-------ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII 168
            M  S       ++W+  L+  ++  + +  +L  + +               +    I+
Sbjct: 135 DMIQSGFPPGIQQVWSDTLARGEATILAAVRWLLESAVSLA------------ENAFDIV 182

Query: 169 FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK----KISRIVPKVIRSTFLGMTIIAIG 224
            + +  F+F RD  +I +   +L      A+ +    +++RI+  V+R  FL    +A+ 
Sbjct: 183 LIPVMSFYFLRDWEAIGKGSLNLVPQNLRAHVQIVGGEVNRILRAVVRCNFL----MALV 238

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLW 284
            G++      L G+   + +G+I  I  +IP   P+     ++ +     +  +  L L+
Sbjct: 239 VGVLTTVGLTLIGLEYSLLIGIIAGIADLIPYFGPLIGMVPALVV----GLLESPRLALY 294

Query: 285 GAIELFIVDKT----LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + + +V +     L P L+G  + L  L   F L+ G    G++GL +
Sbjct: 295 AVLIMIVVQQIEANLLSPKLLGDSVGLHPLAVIFALLAGGHLFGIVGLLL 344


>gi|254172650|ref|ZP_04879325.1| membrane protein [Thermococcus sp. AM4]
 gi|214033579|gb|EEB74406.1| membrane protein [Thermococcus sp. AM4]
          Length = 329

 Score = 36.6 bits (83), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 156/359 (43%), Gaps = 65/359 (18%)

Query: 14  WMIMFIILVSLYFL--KGFFAPVLSALIIGFTSWPIYSSF---ISKKEESSTFLAVIATV 68
           W I+ ++++ L +L      +P++ AL + + ++PI+      I +K+ +    AVIA +
Sbjct: 8   WAIVTVVILYLVWLVVSPVVSPIILALAVAYVTYPIHERLSPKIGRKKAAFLLTAVIAVL 67

Query: 69  SVMCLFIVPLLFLFYYG-MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           S          FLF  G +L + ++  ++V   +       WL  +             +
Sbjct: 68  S----------FLFLLGFVLWINDVKYQIVRYMEISF---NWLQSVT------------I 102

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF---FFYRDGFSI 184
           S  +  ++L+     T G+       SR     + Y  SI  + + +F   F Y      
Sbjct: 103 SSQRINEVLTAI---TEGVR------SRIEAYVISYTYSIPKLALEIFVMLFVYYGTLVN 153

Query: 185 SQQLDSLGEHLFPAYWKKI-------SRIVPKVIRSTFLGMTIIAIGEGLVLGS-AYWLA 236
           ++++     +L P   K+        +R     +  ++L ++++  G    LG  A+ +A
Sbjct: 154 AEEIGRELYNLLPPQRKEFGIRLIEAARYTLDTLLKSWLTLSVLK-GSATALGFWAFRIA 212

Query: 237 GVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-- 292
                +ALG++TA + ++P  GG  I    V +YL+   +   A   FL+    +  +  
Sbjct: 213 PTSGAIALGILTAFVELLPFLGGWLIWIPGV-VYLVHTSHYVLA---FLFAVYSIVFISP 268

Query: 293 --DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI---WKESI 346
             D  L P +      L  L +  G+ GG+   GL+G+ IGPV + L+A +   WK+++
Sbjct: 269 LPDFVLAPKMTLRRRGLNALISLLGIFGGLWAFGLVGIIIGPVSLGLLATVIEEWKKAM 327


>gi|77405418|ref|ZP_00782512.1| membrane protein, putative [Streptococcus agalactiae H36B]
 gi|77176000|gb|EAO78775.1| membrane protein, putative [Streptococcus agalactiae H36B]
          Length = 396

 Score = 36.6 bits (83), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 111/267 (41%), Gaps = 26/267 (9%)

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA--SELWTKHLSHPQSLKILSETFLKT 143
           M ++   V+KV +     I    WL    G + +  S + ++ +S+       +E F K 
Sbjct: 119 MEDLPSYVNKVQMETSSFIDHNPWLKSYKGEISSMLSNISSQAVSY-------AEKFSK- 170

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           N +D+    AS    +     ++ I     LF+  RD  ++      +          +I
Sbjct: 171 NVLDWAGNLASTVARV----TVATIMAPFILFYLLRDSRNMKNGFLMVLPTKLRQPTDRI 226

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISF 262
            R +   +     G  I+AI  G++    Y + G+   V LG+I  ++ M+P  G+ ++ 
Sbjct: 227 LREMNSQMSGYVQGQIIVAITVGVIFSIMYSIIGLRYGVTLGIIAGVLNMVPYLGSFVAQ 286

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR-----PFLVGGPIKLPFLPTFFGLV 317
             V I  L+ G +             +F++++TL      P ++G  + +  +   F L+
Sbjct: 287 IPVFILALVAGPVMVVKVAI------VFVIEQTLEGRFVSPLVLGNKLSIHPITIMFILL 340

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKE 344
                 G+ G+F+   + A I V+ KE
Sbjct: 341 TSGAMFGVWGVFLSIPIYASIKVVVKE 367


>gi|227552578|ref|ZP_03982627.1| permease [Enterococcus faecium TX1330]
 gi|257888193|ref|ZP_05667846.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257896916|ref|ZP_05676569.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|227178327|gb|EEI59299.1| permease [Enterococcus faecium TX1330]
 gi|257824247|gb|EEV51179.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257833481|gb|EEV59902.1| conserved hypothetical protein [Enterococcus faecium Com12]
          Length = 379

 Score = 36.6 bits (83), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 20/178 (11%)

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           L F ++DG      +D+L  H FP   +K  R   K +  T        I + L++G   
Sbjct: 181 LLFMFKDGHKF---IDALS-HFFPKAIRKELRQTVKELNETLSAYISSTILDALIIGVMS 236

Query: 234 WLA----GVPSHVALGVITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAI 287
           +LA      P  + L VI  I  +IP   P   +  A+ + L I    F A    L+ A+
Sbjct: 237 FLAMRIFNQPYSLLLAVICGITNIIPYVGPFIGAVPAIIVGLFISP--FQA----LYMAL 290

Query: 288 ELFIVDKT----LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            + ++ +     ++P L G  + +  L     L+G     G+LG+ I   + A+I  I
Sbjct: 291 SILVIQQLDGNLIKPLLFGKSMNIHPLTIILVLIGAGSVAGILGMLICIPVYAVIKTI 348


>gi|296112696|ref|YP_003626634.1| hypothetical protein MCR_0469 [Moraxella catarrhalis RH4]
 gi|295920390|gb|ADG60741.1| conserved hypothetical protein [Moraxella catarrhalis RH4]
 gi|326560951|gb|EGE11316.1| hypothetical protein E9G_03819 [Moraxella catarrhalis 7169]
 gi|326563813|gb|EGE14064.1| hypothetical protein E9M_02703 [Moraxella catarrhalis 46P47B1]
 gi|326566826|gb|EGE16965.1| hypothetical protein E9K_00888 [Moraxella catarrhalis 103P14B1]
 gi|326567334|gb|EGE17449.1| hypothetical protein E9Q_05493 [Moraxella catarrhalis BC1]
 gi|326569849|gb|EGE19899.1| hypothetical protein E9U_06036 [Moraxella catarrhalis BC8]
 gi|326571545|gb|EGE21560.1| hypothetical protein E9S_02959 [Moraxella catarrhalis BC7]
 gi|326576739|gb|EGE26646.1| hypothetical protein E9Y_02005 [Moraxella catarrhalis 101P30B1]
 gi|326577585|gb|EGE27462.1| hypothetical protein EA1_02327 [Moraxella catarrhalis O35E]
          Length = 415

 Score = 36.6 bits (83), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 92/224 (41%), Gaps = 34/224 (15%)

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLS---------IIFMIIALFF-----FYRDGFSISQ 186
           L+ N   F+ RF S   M +L   L          ++  II LF       YR  F    
Sbjct: 136 LRDNPQQFLTRF-SDGAMAYLPTYLGGMVSGMGTLVVITIIGLFLAISPSVYRRSFVAMV 194

Query: 187 QLDSL--GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             DS    E+L    ++ + +          LG  ++    G+  G A WL G+P  +AL
Sbjct: 195 PKDSRDKAEYLLDRSYRSMQQ--------WLLGQLVVMAFVGIATGIALWLMGIPFALAL 246

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK----TLRPFL 300
           G I  ++  +P   P   +A+ I LL    +  +  + LW A+ + +V +     + P +
Sbjct: 247 GFIAFLLDFVPVLGP-WLSAIPILLL---TLIVSPKMLLWVALMIVVVQQLESYVISPIV 302

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
               + LP +      V      G+LG+ +   LM ++ ++W +
Sbjct: 303 QNRMVDLPPVALLLSQVIMGSITGILGIALATPLMVMV-IVWVQ 345


>gi|257885399|ref|ZP_05665052.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257821255|gb|EEV48385.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
          Length = 379

 Score = 36.6 bits (83), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 20/178 (11%)

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           L F ++DG      +D+L  H FP   +K  R   K +  T        I + L++G   
Sbjct: 181 LLFMFKDGHKF---IDALS-HFFPKAIRKELRQTVKELNETLSAYISSTILDALIIGVMS 236

Query: 234 WLA----GVPSHVALGVITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAI 287
           +LA      P  + L VI  I  +IP   P   +  A+ + L I    F A    L+ A+
Sbjct: 237 FLAMRIFDQPYSLLLAVICGITNIIPYVGPFIGAVPAIIVGLFISP--FQA----LYMAL 290

Query: 288 ELFIVDKT----LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            + ++ +     ++P L G  + +  L     L+G     G+LG+ I   + A+I  I
Sbjct: 291 SILVIQQLDGNLIKPLLFGKSMNIHPLTIILVLIGAGSVAGILGMLICIPVYAVIKTI 348


>gi|77411721|ref|ZP_00788059.1| membrane protein, putative [Streptococcus agalactiae CJB111]
 gi|77162229|gb|EAO73202.1| membrane protein, putative [Streptococcus agalactiae CJB111]
          Length = 396

 Score = 36.6 bits (83), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 117/271 (43%), Gaps = 34/271 (12%)

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA--SELWTKHLSHPQSLKILSETFLKT 143
           M ++   V+KV +     I    WL    G + +  S + ++ +S+       +E F K 
Sbjct: 119 MEDLPSYVNKVQMETSSFIDHNPWLKSYKGEISSMLSNISSQAVSY-------AEKFSK- 170

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           N +D+    AS    +     ++ I     LF+  RD    S+++ +    + P   ++ 
Sbjct: 171 NVLDWAGNLASTVARV----TVATIMAPFILFYLLRD----SRKMKNGFLMVLPTKLRQP 222

Query: 204 SRIVPKVIRSTF----LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GA 258
           +  + + + S       G  I+AI  G++    Y + G+   V LG+I  ++ M+P  G+
Sbjct: 223 TDRILREMNSQMSGYVQGQIIVAITVGVIFSIMYSIIGLRYGVTLGIIAGVLNMVPYLGS 282

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR-----PFLVGGPIKLPFLPTF 313
            ++   V I  L+ G +             +F++++TL      P ++G  + +  +   
Sbjct: 283 FVAQIPVFILALVAGPVMVVKVAI------VFVIEQTLEGRFVSPLVLGNKLSIHPITIM 336

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           F L+      G+ G+F+   + A I V+ KE
Sbjct: 337 FILLTSGAMFGVWGVFLSIPIYASIKVVVKE 367


>gi|69245951|ref|ZP_00603723.1| Protein of unknown function UPF0118 [Enterococcus faecium DO]
 gi|257880352|ref|ZP_05660005.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257891011|ref|ZP_05670664.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257894264|ref|ZP_05673917.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|258614696|ref|ZP_05712466.1| membrane protein [Enterococcus faecium DO]
 gi|260562344|ref|ZP_05832858.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|293563178|ref|ZP_06677636.1| transport protein [Enterococcus faecium E1162]
 gi|314939360|ref|ZP_07846601.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
 gi|314941563|ref|ZP_07848448.1| conserved hypothetical protein [Enterococcus faecium TX0133C]
 gi|314949610|ref|ZP_07852934.1| conserved hypothetical protein [Enterococcus faecium TX0082]
 gi|314953717|ref|ZP_07856592.1| conserved hypothetical protein [Enterococcus faecium TX0133A]
 gi|314992173|ref|ZP_07857617.1| conserved hypothetical protein [Enterococcus faecium TX0133B]
 gi|314997664|ref|ZP_07862594.1| conserved hypothetical protein [Enterococcus faecium TX0133a01]
 gi|68195481|gb|EAN09925.1| Protein of unknown function UPF0118 [Enterococcus faecium DO]
 gi|257814580|gb|EEV43338.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257827371|gb|EEV53997.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257830643|gb|EEV57250.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|260073268|gb|EEW61609.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|291604869|gb|EFF34345.1| transport protein [Enterococcus faecium E1162]
 gi|313588299|gb|EFR67144.1| conserved hypothetical protein [Enterococcus faecium TX0133a01]
 gi|313593276|gb|EFR72121.1| conserved hypothetical protein [Enterococcus faecium TX0133B]
 gi|313594301|gb|EFR73146.1| conserved hypothetical protein [Enterococcus faecium TX0133A]
 gi|313599622|gb|EFR78465.1| conserved hypothetical protein [Enterococcus faecium TX0133C]
 gi|313641345|gb|EFS05925.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
 gi|313644034|gb|EFS08614.1| conserved hypothetical protein [Enterococcus faecium TX0082]
          Length = 379

 Score = 36.6 bits (83), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 20/178 (11%)

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           L F ++DG      +D+L  H FP   +K  R   K +  T        I + L++G   
Sbjct: 181 LLFMFKDGHKF---IDALS-HFFPKAIRKELRQTVKELNETLSAYISSTILDALIIGVMS 236

Query: 234 WLA----GVPSHVALGVITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAI 287
           +LA      P  + L VI  I  +IP   P   +  A+ + L I    F A    L+ A+
Sbjct: 237 FLAMRIFDQPYSLLLAVICGITNIIPYVGPFIGAVPAIIVGLFISP--FQA----LYMAL 290

Query: 288 ELFIVDKT----LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            + ++ +     ++P L G  + +  L     L+G     G+LG+ I   + A+I  I
Sbjct: 291 SILVIQQLDGNLIKPLLFGKSMNIHPLTIILVLIGAGSVAGILGMLICIPVYAVIKTI 348


>gi|77407806|ref|ZP_00784559.1| membrane protein, putative [Streptococcus agalactiae COH1]
 gi|77173553|gb|EAO76669.1| membrane protein, putative [Streptococcus agalactiae COH1]
          Length = 396

 Score = 36.6 bits (83), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 111/267 (41%), Gaps = 26/267 (9%)

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA--SELWTKHLSHPQSLKILSETFLKT 143
           M ++   V+KV +     I    WL    G + +  S + ++ +S+       +E F K 
Sbjct: 119 MEDLPSYVNKVQMETSSFIDHNPWLKSYKGEISSMLSNISSQAVSY-------AEKFSK- 170

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           N +D+    AS    +     ++ I     LF+  RD  ++      +          +I
Sbjct: 171 NVLDWAGNLASTVARV----TVATIMAPFILFYLLRDSRNMKNGFLMVLPTKLRQPADRI 226

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISF 262
            R +   +     G  I+AI  G++    Y + G+   V LG+I  ++ M+P  G+ ++ 
Sbjct: 227 LREMNSQMSGYVQGQIIVAITVGVIFSIMYSIIGLRYGVTLGIIAGVLNMVPYLGSFVAQ 286

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR-----PFLVGGPIKLPFLPTFFGLV 317
             V I  L+ G +             +F++++TL      P ++G  + +  +   F L+
Sbjct: 287 IPVFILALVAGPVMVVKVAI------VFVIEQTLEGRFVSPLVLGNKLSIHPITIMFILL 340

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKE 344
                 G+ G+F+   + A I V+ KE
Sbjct: 341 TSGAMFGVWGVFLSIPIYASIKVVVKE 367


>gi|116491173|ref|YP_810717.1| permease [Oenococcus oeni PSU-1]
 gi|290890689|ref|ZP_06553759.1| hypothetical protein AWRIB429_1149 [Oenococcus oeni AWRIB429]
 gi|116091898|gb|ABJ57052.1| Predicted permease [Oenococcus oeni PSU-1]
 gi|290479664|gb|EFD88318.1| hypothetical protein AWRIB429_1149 [Oenococcus oeni AWRIB429]
          Length = 382

 Score = 36.6 bits (83), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 46/222 (20%), Positives = 92/222 (41%), Gaps = 13/222 (5%)

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           S+ +L TNGI  + +      MI     +++I     L++  +DG     QL       F
Sbjct: 166 SKNYL-TNGIAGVGKITRVITMI----VITLITFPFILYYMLKDG----DQLPRYISQFF 216

Query: 197 PAYWK----KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           PA  +    ++   + K I     G  + A+   ++    + + G+P  + +G++   + 
Sbjct: 217 PARTRPSLLEVLHEINKQISDYLRGQILTAVAVSIMFMIGFSIIGLPYGIWIGLLAGPLN 276

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +IP          +I + + G I     + +   IE  +  + + P ++G  + +  +  
Sbjct: 277 LIPYLGSFLVMVPAIIIALFGGIHLVIAVLIVFVIEQTLESRLIHPKIMGASMNIHPITV 336

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
              L+G     GLLG+  G    A++ V+   S    +EN E
Sbjct: 337 LVILLGAGEMFGLLGVAFGIPTYAVLKVLIGRSYHWWRENSE 378


>gi|312111198|ref|YP_003989514.1| hypothetical protein GY4MC1_2166 [Geobacillus sp. Y4.1MC1]
 gi|311216299|gb|ADP74903.1| protein of unknown function UPF0118 [Geobacillus sp. Y4.1MC1]
          Length = 342

 Score = 36.6 bits (83), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 16/162 (9%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-- 258
           +K  R   KVI + F    IIA     +  +  W+   P    LG++   + +IP     
Sbjct: 190 RKFVRTFGKVIEAQF----IIATVNMAITVAGLWIMDFPQLFGLGILIFFLGLIPVAGVI 245

Query: 259 ----PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
               P+ F A SI     G I     + +  A+   +    L P L+     LP   TF 
Sbjct: 246 ISLFPLCFIAYSI-----GGIMKVVYVLIMIAVIHALEAYVLNPKLMSSKTNLPVFYTFI 300

Query: 315 GLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKEK 355
            L+      G+ GL +G PV + ++ V+  +++   +++ ++
Sbjct: 301 VLIFSEHFFGVWGLILGIPVFVFILDVLGVKTVQGKRDDDDE 342


>gi|87123583|ref|ZP_01079434.1| hypothetical protein RS9917_06970 [Synechococcus sp. RS9917]
 gi|86169303|gb|EAQ70559.1| hypothetical protein RS9917_06970 [Synechococcus sp. RS9917]
          Length = 349

 Score = 36.6 bits (83), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 94/212 (44%), Gaps = 23/212 (10%)

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETF--LKTNGIDFIPRFASRFGMIFLD----- 162
           ++ +PG + A+E W   L    + + L   F  L ++ +  + R AS+     L      
Sbjct: 95  INALPGWLVAAEAWINRLQDLAASRGLPSEFGDLSSDLLTRVSRVASQLSQRLLAILGAT 154

Query: 163 ---YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK-ISRIVPKVIRSTFLGM 218
                 ++I +++A+FF    G +I+  L        P  W++ +   + +  R  F G 
Sbjct: 155 LGITINTVIVLVLAVFFLL-GGDAITAGL----ARWLPERWRQLVVSTITRTFRGYFAGQ 209

Query: 219 TIIAI--GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIF 276
            ++A+    G ++   + + G+P  V   V+  +  +IP  + ++  AVS  L ++    
Sbjct: 210 VLLALILSAGQIV--VFTVIGIPYGVLFAVVIGLTTLIPYASALTIVAVSALLAVQDP-- 265

Query: 277 NATCLFLWGAIEL-FIVDKTLRPFLVGGPIKL 307
                 L  AI +  +VD+ ++P L+G  + L
Sbjct: 266 RTGLEILAAAIGVGQVVDQVIQPRLMGSIVGL 297


>gi|293400193|ref|ZP_06644339.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306593|gb|EFE47836.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 384

 Score = 36.6 bits (83), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 148/354 (41%), Gaps = 59/354 (16%)

Query: 26  FLK---GFFAPVLSALIIGFT-SWPIY------SSFISKKEESS--------TFLAVIAT 67
           FLK   G  AP+LS L++ F  S P+          ++K  +          T + VIA 
Sbjct: 31  FLKSCIGLLAPILSGLLLAFVLSIPVRGLAKRLRRKLTKATDRQIDMISLLLTLICVIAI 90

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSK-----VVLANQHGIPVPRWLSDIPGGMWASEL 122
           ++++C+  +P L      +  +  LV +     V L  ++GI   +  +      W S L
Sbjct: 91  IALLCVIAIPQL---TASVKSIAALVQEKWPDWVGLLQRYGIDTEKLSAHFAALDWKSIL 147

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                   QS+     T + +     +   A        D  +S++       F+   G+
Sbjct: 148 --------QSISSEMNTVISS-----VANVAGSTVSAIADVAISLVIT-----FYVLIGW 189

Query: 183 SISQQLDSLGEHLFPAYWKK--ISRI--VPKVIRSTFLGMTIIAIGEGLVLGS----AYW 234
              ++L S  +    AY K+    RI  + K+   T+         E ++LG+    ++ 
Sbjct: 190 ---RELSSQSKRALYAYCKESVADRICHISKLAHDTYAKFLSGQCVEVMILGTLIFLSFS 246

Query: 235 LAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
           +AG+P      V+TA  A +P  G  +S     ++ L+        C  ++ A + F+ +
Sbjct: 247 VAGIPYAGLTAVLTAAFAFVPYIGGFLSCAFGILFTLLAAPNKALLCFIVYQATQ-FVEN 305

Query: 294 KTLRPFLVGGPIKL-PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           + + P +VG  + L PF      L+GG +  G+LG+     LMAL++ +  ESI
Sbjct: 306 QFIYPHVVGNSVGLSPFWTLLAVLLGG-KLFGVLGMIFFIPLMALVSQLLHESI 358


>gi|167037464|ref|YP_001665042.1| hypothetical protein Teth39_1051 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115878|ref|YP_004186037.1| hypothetical protein Thebr_1078 [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856298|gb|ABY94706.1| protein of unknown function UPF0118 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928969|gb|ADV79654.1| protein of unknown function UPF0118 [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 341

 Score = 36.6 bits (83), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 121/297 (40%), Gaps = 39/297 (13%)

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
            FL V + +     +IVPLL   +  +L+M                +P +  +I   +  
Sbjct: 67  VFLIVASGILFFSFYIVPLLINEFIALLQM----------------IPFYAEEIQKLLI- 109

Query: 120 SELWTKHLSH--PQSLKILSETFLKTNGIDFIPRFASRFGMI--FLDYCLSIIFMIIALF 175
            +L   +LS+  PQ  K+L +     N   F     S F  +   L   + II + I  F
Sbjct: 110 -QLKFNYLSYLPPQVEKVLDKNLGSLNN-AFTYHIDSAFKSVITILKDAVDIIIIPIVTF 167

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYW----KKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
           +F +D     ++++ +    +   +    KKI +I+ K +R+     T +AI   + L  
Sbjct: 168 YFLKDKKVFKEEIERILPQKYSTKFFNILKKIDKILSKYLRAQIYISTFVAIFTMIGLS- 226

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
              L  V     +GV+  I+ +IP   PI    +SI   +   + ++     W  I   +
Sbjct: 227 ---LIKVKYAFLIGVLAGILNIIPYVGPI----LSIIPTVLIGLLDSLTKGFWALIICLL 279

Query: 292 VDKT----LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           V +     + P ++   + L  +   F L+ G    G+ GL +   ++A+I  I  E
Sbjct: 280 VQQVENAFITPKIMSDSVGLHPVTVIFSLIAGGELFGIWGLLLSVPIVAMIKAIVIE 336


>gi|240103708|ref|YP_002960017.1| hypothetical protein TGAM_1651 [Thermococcus gammatolerans EJ3]
 gi|239911262|gb|ACS34153.1| Conserved hypothetical protein [Thermococcus gammatolerans EJ3]
          Length = 333

 Score = 36.6 bits (83), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 76/357 (21%), Positives = 148/357 (41%), Gaps = 61/357 (17%)

Query: 14  WMIMFIILVSLYFL--KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           W I+ ++++ L +L      +P++ AL + + ++P++   + K         + A ++V+
Sbjct: 8   WAIVTVVILYLVWLVVSPVVSPIILALAVAYVTYPLHEKLLPKIGRRKAAFLLTAIIAVL 67

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
                   FLF  G          V+  N     + R++         S  W + ++   
Sbjct: 68  S-------FLFLIGF---------VLWINDVKYQIVRYME-------ISFTWLQSVTV-S 103

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF---FFYRDGFSISQQL 188
           S +I       T G+       SR     + Y  SI  + + +F   F Y      ++++
Sbjct: 104 SQRINEVLTAITEGVR------SRIESYIVSYTYSIPKLALEIFVMLFVYYGALVNAEEI 157

Query: 189 DSLGEHLFPAYWKKI-------SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP-- 239
                +L P   K+        +R     +  ++L ++++   +G      +W  G+   
Sbjct: 158 GRELYNLLPPQRKEFGIRLIEAARYTLDTLLKSWLTLSVL---KGFATALGFWAFGIAPT 214

Query: 240 -SHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV---- 292
              +ALG++TA + ++P  GG  I    V +YL+   N   A   FL+    +  V    
Sbjct: 215 SGAIALGILTAFVELLPFLGGWLIWIPGV-VYLIHSSNYVLA---FLFAVYSIVFVSPLP 270

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI---WKESI 346
           D  L P +      L  L +  G+ GG+   GL+G+ IGPV + L+A +   WK+++
Sbjct: 271 DFVLAPKMTLRRRGLNALISLLGIFGGLWAFGLVGIIIGPVSLGLLATVIEEWKKAM 327


>gi|330752584|emb|CBL87530.1| lysyl-tRNA synthetase [uncultured Flavobacteria bacterium]
          Length = 567

 Score = 36.6 bits (83), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 5/100 (5%)

Query: 110 LSDIPGGMWASELWTKHLSHPQS--LKILSETFLKT---NGIDFIPRFASRFGMIFLDYC 164
           L  IPGG  A    T H +H     L+I +E +LK     G + +  FA  F    +D  
Sbjct: 206 LQPIPGGAAARPFVTHHNAHNTKLYLRIANELYLKRLIVGGFEGVFEFAKDFRNEGMDRT 265

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            +  F ++ L+  Y+D F + +  ++L E +  A  KK  
Sbjct: 266 HNPEFTVMELYVAYKDYFWMMETTENLLESISYAIHKKTE 305


>gi|296333166|ref|ZP_06875619.1| putative permease [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305675328|ref|YP_003867000.1| putative permease [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296149364|gb|EFG90260.1| putative permease [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305413572|gb|ADM38691.1| putative permease [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 353

 Score = 36.6 bits (83), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 16/148 (10%)

Query: 194 HLFPAYWKKIS----RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +L P  W+K      R V   +     G  ++ +  G++ G  +W+ G+P  + LG+I+ 
Sbjct: 191 YLTPKSWRKRGSAFLRDVDDSLGDYIRGQLLVCLILGVMAGITFWIFGLPYPLILGLISG 250

Query: 250 IMAMIP------GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           I  +IP      G  P    A++I   +K  +     +F    I  F+    L PF+VG 
Sbjct: 251 ITNVIPYFGPFIGAIPALLIAMTIS--VKAILVVVITVF----ILQFMEGNILSPFIVGR 304

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
            +K+  +     L+ G    G++G+ + 
Sbjct: 305 SLKMHPVVIMLALLAGGELAGIVGMILA 332


>gi|261209281|ref|ZP_05923673.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289567000|ref|ZP_06447401.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|293553987|ref|ZP_06674589.1| transport protein [Enterococcus faecium E1039]
 gi|294615275|ref|ZP_06695152.1| transport protein [Enterococcus faecium E1636]
 gi|294617337|ref|ZP_06696976.1| transport protein [Enterococcus faecium E1679]
 gi|260076827|gb|EEW64562.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289161201|gb|EFD09100.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|291591872|gb|EFF23504.1| transport protein [Enterococcus faecium E1636]
 gi|291596410|gb|EFF27664.1| transport protein [Enterococcus faecium E1679]
 gi|291601844|gb|EFF32094.1| transport protein [Enterococcus faecium E1039]
          Length = 379

 Score = 36.6 bits (83), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 20/178 (11%)

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           L F ++DG      +D+L  H FP   +K  R   K +  T        I + L++G   
Sbjct: 181 LLFMFKDGHKF---IDALS-HFFPKAIRKELRQTVKELNETLSAYISSTILDALIIGVMS 236

Query: 234 WLA----GVPSHVALGVITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAI 287
           +LA      P  + L VI  I  +IP   P   +  A+ + L I    F A    L+ A+
Sbjct: 237 FLAMRIFDQPYSLLLAVICGITNIIPYVGPFIGAVPAIIVGLFISP--FQA----LYMAL 290

Query: 288 ELFIVDKT----LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            + ++ +     ++P L G  + +  L     L+G     G+LG+ I   + A+I  I
Sbjct: 291 SILVIQQLDGNLIKPLLFGKSMNIHPLTIILVLIGAGSVAGILGMLICIPVYAVIKTI 348


>gi|257882205|ref|ZP_05661858.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|293568382|ref|ZP_06679703.1| transport protein [Enterococcus faecium E1071]
 gi|294623135|ref|ZP_06702021.1| transport protein [Enterococcus faecium U0317]
 gi|257817863|gb|EEV45191.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|291588903|gb|EFF20730.1| transport protein [Enterococcus faecium E1071]
 gi|291597504|gb|EFF28669.1| transport protein [Enterococcus faecium U0317]
          Length = 379

 Score = 36.6 bits (83), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 20/178 (11%)

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           L F ++DG      +D+L  H FP   +K  R   K +  T        I + L++G   
Sbjct: 181 LLFMFKDGHKF---IDALS-HFFPKAIRKELRQTVKELNETLSAYISSTILDALIIGVMS 236

Query: 234 WLA----GVPSHVALGVITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAI 287
           +LA      P  + L VI  I  +IP   P   +  A+ + L I    F A    L+ A+
Sbjct: 237 FLAMRIFDQPYSLLLAVICGITNIIPYVGPFIGAVPAIIVGLFISP--FQA----LYMAL 290

Query: 288 ELFIVDKT----LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            + ++ +     ++P L G  + +  L     L+G     G+LG+ I   + A+I  I
Sbjct: 291 SILVIQQLDGNLIKPLLFGKSMNIHPLTIILVLIGAGSVAGILGMLICIPVYAVIKTI 348


>gi|228917024|ref|ZP_04080584.1| hypothetical protein bthur0012_42360 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228929435|ref|ZP_04092456.1| hypothetical protein bthur0010_41200 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228935711|ref|ZP_04098524.1| hypothetical protein bthur0009_41560 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228948104|ref|ZP_04110388.1| hypothetical protein bthur0007_42300 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229123931|ref|ZP_04253123.1| hypothetical protein bcere0016_42160 [Bacillus cereus 95/8201]
 gi|228659233|gb|EEL14881.1| hypothetical protein bcere0016_42160 [Bacillus cereus 95/8201]
 gi|228811462|gb|EEM57799.1| hypothetical protein bthur0007_42300 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228823949|gb|EEM69768.1| hypothetical protein bthur0009_41560 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228830223|gb|EEM75839.1| hypothetical protein bthur0010_41200 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228842631|gb|EEM87719.1| hypothetical protein bthur0012_42360 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 361

 Score = 36.6 bits (83), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 33/183 (18%)

Query: 188 LDSLGE--HLF----PAYWKKISRIVPKVIR----STFLGMTIIAIGEGLVLGSAYWLAG 237
           L   GE  H+F    P+ W+   +++ K I     S   G   + +  G V   ++W  G
Sbjct: 185 LKDYGEFYHIFWKLVPSKWRSTGQMLAKEIDKSLGSYIRGQLFVCLVLGGVSVLSFWFIG 244

Query: 238 VPSHVALGVITAIMAMIP------GGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIEL 289
           +   + LG+I  +  +IP      G  P    A  VS  LLIK  I  A        I  
Sbjct: 245 MKYPLLLGIIIGVTDIIPYFGPILGAIPALMIAATVSTSLLIKAGITIA--------ILQ 296

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI------W 342
           F+    L P++VG  +++  +     L+ G    G++GL I  PVL  +  VI      W
Sbjct: 297 FVESNILSPYIVGKSLRMHPVIIMLALLVGGEVAGIVGLLISVPVLAVIRTVIVHVRPLW 356

Query: 343 KES 345
           K+ 
Sbjct: 357 KKE 359


>gi|307265414|ref|ZP_07546970.1| sporulation integral membrane protein YtvI [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|326390340|ref|ZP_08211899.1| sporulation integral membrane protein YtvI [Thermoanaerobacter
           ethanolicus JW 200]
 gi|306919528|gb|EFN49746.1| sporulation integral membrane protein YtvI [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|325993617|gb|EGD52050.1| sporulation integral membrane protein YtvI [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 354

 Score = 36.6 bits (83), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 100/235 (42%), Gaps = 20/235 (8%)

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI-------IFMIIALFFFY 178
           +++ P ++  L E  +++  +++I  FA       L++   +       +  ++A FF  
Sbjct: 123 YVTLPPNITSLIENNMQS-ILNYISLFAKNLATWLLNFATKLPNFFFMTLITLVATFFIS 181

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG----MTIIAIGEGLVLGSAYW 234
           +D     Q +    +   P++W + ++ +   +  TF G    +  I +   L +     
Sbjct: 182 KD----KQLILDFIKRQIPSHWAQHAKNIQVDLLKTFFGYLRAVATIMLITFLEVSIGLA 237

Query: 235 LAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           + G      LG++  I+  +P  G   +        +++K  +     L L+G +   +V
Sbjct: 238 MIGFDYPFLLGLLVTIVDALPVLGSGAVMVPWALYNIIMKNYMVGIYLLILYGLV--VVV 295

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            + + P +VG  I L  L T   +  G +  G LGL IGPV + +   + K  I+
Sbjct: 296 RQMIEPKIVGQSIGLHPLVTLLSMFIGAKLFGALGLVIGPVFVVVFKALQKAEII 350


>gi|329923748|ref|ZP_08279143.1| putative membrane protein [Paenibacillus sp. HGF5]
 gi|328941114|gb|EGG37416.1| putative membrane protein [Paenibacillus sp. HGF5]
          Length = 379

 Score = 36.6 bits (83), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 80/173 (46%), Gaps = 2/173 (1%)

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
           F +  LSII +   LF+  +DG  + Q++ S       +    + + +   I S   G  
Sbjct: 179 FTEIVLSIITVPFVLFYMLKDGKKLPQKILSFLPTQSRSGILHVLQDINHQISSFIRGQI 238

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNA 278
           I+++  G++L   Y + G+   + L +I +  +++P  G  I+ T   I  L+   +   
Sbjct: 239 IVSVCIGILLYIGYMIIGLDYALILAIIASFTSVVPYLGPAIAITPALIVALVTSPVMLL 298

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
             + +W  ++L I  K + P ++G  +K+  +   F ++      G++G+ + 
Sbjct: 299 KMVAVWTIVQL-IEGKFISPQIMGKTLKIHPITIIFVILTAGNLFGVVGILLA 350


>gi|326575175|gb|EGE25103.1| hypothetical protein E9W_04228 [Moraxella catarrhalis CO72]
          Length = 415

 Score = 36.6 bits (83), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 92/224 (41%), Gaps = 34/224 (15%)

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLS---------IIFMIIALFF-----FYRDGFSISQ 186
           L+ N   F+ RF S   M +L   L          ++  II LF       YR  F    
Sbjct: 136 LRDNPQQFLTRF-SDGAMAYLPTYLGGMVSGMGTLVVITIIGLFLAISPSVYRRSFVAMV 194

Query: 187 QLDSL--GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             DS    E+L    ++ + +          LG  ++    G+  G A WL G+P  +AL
Sbjct: 195 PKDSRDKAEYLLDRSYRSMQQ--------WLLGQLVVMAFVGIATGIALWLMGIPFALAL 246

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK----TLRPFL 300
           G I  ++  +P   P   +A+ I LL    +  +  + LW A+ + +V +     + P +
Sbjct: 247 GFIAFLLDFVPVLGP-WLSAIPILLL---TLIVSPKMLLWVALMIVVVQQLESYVISPIV 302

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
               + LP +      V      G+LG+ +   LM ++ ++W +
Sbjct: 303 QNRMVDLPPVALLLSQVIMGSITGILGIALATPLMVMV-IVWVQ 345


>gi|86608241|ref|YP_477003.1| hypothetical protein CYB_0757 [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556783|gb|ABD01740.1| putative membrane protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 417

 Score = 36.6 bits (83), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 18/171 (10%)

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D L + + P   +    I  +V+ S  LG+ I          S  +L      +ALGVI 
Sbjct: 195 DRLAQQVHPMAQRMGGYIQGRVLVSAILGVMITV--------SLRFLGLSEFALALGVIA 246

Query: 249 AIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAI---ELFIVDKTLRPFLVGG 303
               +IP   P+  S  A+ + ++  G  F    L L+ A+   E +++D    P LVG 
Sbjct: 247 GFTNLIPFIGPVLGSLPALVVAIVQGGWTF-LWVLILYVAVQNLETYVLD----PLLVGS 301

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            +++  L     ++GG + +G++G  I P  +A +AV+ +   +  K+  E
Sbjct: 302 SVRVKPLYQLLAVLGGTQLLGIVGAVIAPPWVAGMAVLLENLYLKPKQEAE 352


>gi|195978174|ref|YP_002123418.1| permease [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|195974879|gb|ACG62405.1| permease [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 375

 Score = 36.6 bits (83), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 82/181 (45%), Gaps = 7/181 (3%)

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS----AYWLAGV 238
            + QQ  +L +     Y K +  +V  ++ S F G  +    E ++LGS      ++  +
Sbjct: 197 ELCQQATTLIDTYTGKYAKTVHYLVG-LLHSRFRGFFVSQTLEAMILGSLTAIGMFILQL 255

Query: 239 PSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P    +GV+ A  A+IP  GA I   A+   L++  ++  A    ++  I   I    + 
Sbjct: 256 PFAGTIGVLVAFTALIPVVGASIG-AAIGFVLIMTQSMSQAVVFIVFLVILQQIEGNFIY 314

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           P +VGG I LP +     +  G    G++G+ +   L A +  + K+ I   +  +++ S
Sbjct: 315 PRVVGGSIGLPAMWVLMAITIGAALKGIVGMIVAVPLAATLYQVVKDHIHKKQALQDRQS 374

Query: 358 S 358
           +
Sbjct: 375 N 375


>gi|315648828|ref|ZP_07901923.1| sporulation integral membrane protein YtvI [Paenibacillus vortex
           V453]
 gi|315275796|gb|EFU39148.1| sporulation integral membrane protein YtvI [Paenibacillus vortex
           V453]
          Length = 372

 Score = 36.6 bits (83), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 68/136 (50%), Gaps = 3/136 (2%)

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIF 276
           + +I+I   +V+ + Y L GV S  A+G++  ++ ++P  G  I     S+Y  +  ++ 
Sbjct: 231 LILISITAFIVMITLYAL-GVNSAFAIGLLIGLVDLLPYLGVGIVLIPWSLYAFMSDDLT 289

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
               L +  +I + IV + + P ++   + L  L   FG+  G++  G+LGL IGPV + 
Sbjct: 290 LGIGLTVLYSI-ILIVRQIMEPKVLASSVGLDPLAALFGMFVGLKLFGILGLIIGPVSLV 348

Query: 337 LIAVIWKESIMAIKEN 352
           ++    +  +     N
Sbjct: 349 IVDAFRRAHVFKDLRN 364


>gi|282880125|ref|ZP_06288845.1| membrane family protein [Prevotella timonensis CRIS 5C-B1]
 gi|281305998|gb|EFA98038.1| membrane family protein [Prevotella timonensis CRIS 5C-B1]
          Length = 385

 Score = 36.6 bits (83), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 40/201 (19%), Positives = 85/201 (42%), Gaps = 13/201 (6%)

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEH---LFPA----YWKKISRIVPKVIRSTFLGM 218
           SII  ++A        F I Q  + L ++   +FP     +W ++ + V + + +   G 
Sbjct: 174 SIIISVVASLITLLYTFFILQDYEFLTDNWIRIFPKKNRPFWSELMQDVERELNNYIRGQ 233

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA 278
            ++++  G++ G    +   P  +ALG++  +M ++P    ++   ++   ++K      
Sbjct: 234 GLVSLCLGILFGIGLTIIDFPMAIALGIMMGLMNLVPYLHTLALVPMAFLAMLKAADTGQ 293

Query: 279 TCLFLWG------AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
             L ++G       I   I D  L P ++G  + L        L      +G +GL +  
Sbjct: 294 NFLIVFGLSLLVFLIVQVISDTVLTPKIMGKAMNLNPAILLLSLSIWGTLLGFIGLIVAL 353

Query: 333 VLMALIAVIWKESIMAIKENK 353
            L  L+   WK+ +   K+ +
Sbjct: 354 PLTTLLIAYWKKYVTQEKQQE 374


>gi|317128236|ref|YP_004094518.1| hypothetical protein Bcell_1524 [Bacillus cellulosilyticus DSM
           2522]
 gi|315473184|gb|ADU29787.1| protein of unknown function UPF0118 [Bacillus cellulosilyticus DSM
           2522]
          Length = 358

 Score = 36.2 bits (82), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 103/246 (41%), Gaps = 34/246 (13%)

Query: 129 HPQSLKILSETFLKT------NGIDFIPRFASRFGMI---FLDYCLSIIFMIIALFFFYR 179
           H Q+ ++L  TF +       +G  +I    +  G+I     D+ L +I +   +F+  +
Sbjct: 122 HAQT-EVLPSTFQEQVEGWMESGEAYIAESITSIGLIIRQLFDWMLLLIVIPFIVFYLLK 180

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF----LGMTIIAIGEGLVLGSAYWL 235
           D       +  +  ++ P  W+K    + K I  +      G  ++ I  G++    +W+
Sbjct: 181 D----MDLVKKVCWYITPDRWRKEGASLVKEIDHSLGNYIRGQILVCIVVGILAYIGFWI 236

Query: 236 AGVPSHVALGVITAIMAMIP------GGAPISFTAV--SIYLLIKGNIFNATCLFLWGAI 287
             +P  V L V   +  +IP      G  P+ F A+  S  L+I G I N     + G +
Sbjct: 237 IDMPYAVLLAVFIGLTNIIPYFGPIIGVIPVVFIALTESFQLVILGLIVNFIVQIIEGNL 296

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
                   + P +VG  + +  +   F LV G    G++GL I   ++ ++ VI      
Sbjct: 297 --------IAPLIVGKTLHMHPVLIIFALVVGGELGGVIGLIISVPILTVLRVILLHIRQ 348

Query: 348 AIKENK 353
            ++E K
Sbjct: 349 IVRERK 354


>gi|118479551|ref|YP_896702.1| permease [Bacillus thuringiensis str. Al Hakam]
 gi|229186630|ref|ZP_04313791.1| hypothetical protein bcere0004_41730 [Bacillus cereus BGSC 6E1]
 gi|118418776|gb|ABK87195.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|228596889|gb|EEK54548.1| hypothetical protein bcere0004_41730 [Bacillus cereus BGSC 6E1]
          Length = 361

 Score = 36.2 bits (82), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 33/183 (18%)

Query: 188 LDSLGE--HLF----PAYWKKISRIVPKVIR----STFLGMTIIAIGEGLVLGSAYWLAG 237
           L   GE  H+F    P+ W+   +++ K I     S   G   + +  G V   ++W  G
Sbjct: 185 LKDYGEFYHIFWKLVPSKWRSTGQMLAKEIDKSLGSYIRGQLFVCLVLGGVSVLSFWFIG 244

Query: 238 VPSHVALGVITAIMAMIP------GGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIEL 289
           +   + LG+I  +  +IP      G  P    A  VS  LLIK  I  A        I  
Sbjct: 245 MKYPLLLGIIIGVTDIIPYFGPILGAIPALMIAATVSTSLLIKAGITIA--------ILQ 296

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI------W 342
           F+    L P++VG  +++  +     L+ G    G++GL I  PVL  +  VI      W
Sbjct: 297 FVESNILSPYIVGKSLRMHPVIIMLALLVGGEVAGIVGLLISVPVLAVIRTVIVHVRPLW 356

Query: 343 KES 345
           K+ 
Sbjct: 357 KKE 359


>gi|253989272|ref|YP_003040628.1| permease perm [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253780722|emb|CAQ83884.1| putative permease perm [Photorhabdus asymbiotica]
          Length = 359

 Score = 36.2 bits (82), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 104/237 (43%), Gaps = 36/237 (15%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGF-TSWPIYSSFISKKEESST 60
           R    +PQ I  ++I+ +    +YFL G  AP+L A+++ +   WP  +S + K      
Sbjct: 10  RRRFTDPQVIALFIILVVGFCIIYFLHGILAPLLVAIVLAYLLEWP--TSMLEK------ 61

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM--- 117
            L    TV+V  + I+      + G+  +  L+     A Q G+ +   LSDIP  +   
Sbjct: 62  -LGCSRTVAVCIVLII------FSGISALVILIVAPT-AWQQGLNL---LSDIPNMLNRF 110

Query: 118 --WASELWTKH--LSHPQSLKILSETF---LKTNGIDFIP-RFASRFGMIFLDYCLSIIF 169
             +A  L T++  L     + +++E     + T G   +    AS  G++ L   + +I 
Sbjct: 111 NEYAQTLPTRYPVLVDAGIIDMMAENLRSKISTAGESVVKFSVASLIGLLTL--AIYLIL 168

Query: 170 MIIALFFFYRDGFSISQQLDSL---GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
           + +  FF  +D   + Q L  +      L    W+++++ +   IR     M I+ I
Sbjct: 169 VPLMAFFLLKDKNQMLQALQRVLPRNRILAGQVWREMNQQITNYIRGKVTEMVIVGI 225


>gi|300812733|ref|ZP_07093140.1| putative membrane protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496273|gb|EFK31388.1| putative membrane protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 393

 Score = 36.2 bits (82), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 2/169 (1%)

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           LFF  +DG  +   L       +     K+   V + + S  +G   +AI  G++    Y
Sbjct: 192 LFFMLKDGHKLRPFLVKFAPQRWEQATSKLLHEVNQAVSSYVIGQVSVAICVGIMFFIGY 251

Query: 234 WLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            + G P   AL +    + +IP  G  I      I  L+      A  L ++  IE  I 
Sbjct: 252 TIIGEPYGAALAICAGFLNLIPYFGTFIGLIPALIIALVTNLPMVAKVLVVF-FIEQIIE 310

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            + + P +VG  +K+  + T   ++G     GL G+  G  + A++ ++
Sbjct: 311 TRVISPLVVGNRLKMHPVTTIIVMLGAGSVWGLWGVIGGIPIYAVMKIL 359


>gi|320526967|ref|ZP_08028156.1| hypothetical protein HMPREF9430_00255 [Solobacterium moorei F0204]
 gi|320132552|gb|EFW25093.1| hypothetical protein HMPREF9430_00255 [Solobacterium moorei F0204]
          Length = 380

 Score = 36.2 bits (82), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 81/189 (42%), Gaps = 5/189 (2%)

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK----ISRIVPKVIRSTFLGMTIIAIGE 225
           MIIAL+    D  ++ +Q+  +   L P    K     +R+      S   G  + ++  
Sbjct: 189 MIIALYILL-DEINLKRQIKKVLYALLPEKTTKSILRTTRLTINTFNSFVAGKAVDSLII 247

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           G++         +P    + V+  +  MIP   P      SI +L+  + F A    ++ 
Sbjct: 248 GILCYIILSFMKMPYTPLISVVVGVTNMIPVFGPFLGAVPSILILLLVDPFKALEFSIFV 307

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            I   +    + P ++GG + LP L   F ++ G    G++G+FIG  + ++I V+  E 
Sbjct: 308 LILQQVDGNIIGPRILGGAVGLPTLYVMFAIIIGGALFGIVGMFIGVPVFSVIFVLVSEF 367

Query: 346 IMAIKENKE 354
           I    + K 
Sbjct: 368 IHRQLDRKN 376


>gi|302875978|ref|YP_003844611.1| hypothetical protein Clocel_3161 [Clostridium cellulovorans 743B]
 gi|307686694|ref|ZP_07629140.1| hypothetical protein Ccel74_00981 [Clostridium cellulovorans 743B]
 gi|302578835|gb|ADL52847.1| protein of unknown function UPF0118 [Clostridium cellulovorans
           743B]
          Length = 307

 Score = 36.2 bits (82), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 8/151 (5%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
           KVI++ FL    IA+   ++   A W+ G P  + LG +  +++ IP  G  IS   +S+
Sbjct: 162 KVIQAQFL----IALVNSILSIIALWIMGFPQLIGLGFMIFVLSFIPVAGVIISLIPLSL 217

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
                G +     + +  A+        L P L+     LP    F  L+ G   MG+ G
Sbjct: 218 IAFKIGGVTKLISVIIMIALLHSFESYVLNPKLISDKTSLPIFFIFAILILGKEFMGMWG 277

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L +G  L   I  I    I+   E+ +KI +
Sbjct: 278 LLLGIPLFIFILDILDVKIV---EDSKKIKN 305


>gi|260584716|ref|ZP_05852462.1| conserved hypothetical protein [Granulicatella elegans ATCC 700633]
 gi|260157739|gb|EEW92809.1| conserved hypothetical protein [Granulicatella elegans ATCC 700633]
          Length = 362

 Score = 36.2 bits (82), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 114/272 (41%), Gaps = 33/272 (12%)

Query: 100 NQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG-IDFIPRFASRFGM 158
           +Q G  +   L+ +   + +SE  TK +       I  ++   +   I F+    S  G 
Sbjct: 104 SQLGTVLSTVLTQLGKLLGSSEFVTKDMLSTIVSGIQGQSSSISQALIGFLSGLTSNIGN 163

Query: 159 IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK--VIRSTFL 216
           IF    L   F+II   F +           S  EHL     + +   +P+  VI+ T++
Sbjct: 164 IF--SSLMNAFLIIVFTFLFL----------SSKEHLAAMTSRLLKVFLPEKVVIKLTYI 211

Query: 217 GMT-------------IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISF 262
           G               I A+  G+++   Y + G+P  V  G+   +++ IP   P I+ 
Sbjct: 212 GQVALETYDQFLMSQLIEAVIIGVMIAVGYSVFGIPYGVMTGIFAGVLSFIPYVGPMIAC 271

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +I++           L L+  I+L I    + P +VG  I LP L T      G   
Sbjct: 272 VVGAIFIFTVSPTQALLSLLLYQVIQL-IEGNLIYPRVVGQSIGLPALFTLAAASIGGNL 330

Query: 323 MGLLGL-FIGPVLMALIAVIWKESIMAIKENK 353
            GLLG+ F  PV  A+I  + KE ++A KEN+
Sbjct: 331 FGLLGMIFFTPVF-AVIYRLVKEFVVA-KENQ 360


>gi|84385148|ref|ZP_00988180.1| hypothetical membrane spanning protein [Vibrio splendidus 12B01]
 gi|84379745|gb|EAP96596.1| hypothetical membrane spanning protein [Vibrio splendidus 12B01]
          Length = 366

 Score = 36.2 bits (82), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 83/190 (43%), Gaps = 2/190 (1%)

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
           F  + AS  G +   +   II  IIA   F  +       +  L   L      ++ ++ 
Sbjct: 150 FASKMASILGSLGGGFVQFIISTIIA-GAFMSNADKCQTGVTHLVVRLTDGKGVELVQLS 208

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
              +RS   G+  +A+ + ++      +AGVP+     +   ++A+I     ++     I
Sbjct: 209 KSTVRSVVQGVIGVAVIQSIMSAIGLVIAGVPAAALWALAVLLVAIIQLPPILALLPAII 268

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           Y+    +   A+   +W  I +   D  L+P L+     +P L    G +GG+   G++G
Sbjct: 269 YMFSVESTLAASLFLVW-CILVSGSDAILKPVLLSRGSHIPMLVILLGALGGMAMSGIVG 327

Query: 328 LFIGPVLMAL 337
           LF+G V+++L
Sbjct: 328 LFVGAVILSL 337


>gi|309808761|ref|ZP_07702647.1| putative membrane protein [Lactobacillus iners LactinV 01V1-a]
 gi|309810014|ref|ZP_07703861.1| putative membrane protein [Lactobacillus iners SPIN 2503V10-D]
 gi|312870682|ref|ZP_07730790.1| putative membrane protein [Lactobacillus iners LEAF 3008A-a]
 gi|308167997|gb|EFO70129.1| putative membrane protein [Lactobacillus iners LactinV 01V1-a]
 gi|308169654|gb|EFO71700.1| putative membrane protein [Lactobacillus iners SPIN 2503V10-D]
 gi|311093793|gb|EFQ52129.1| putative membrane protein [Lactobacillus iners LEAF 3008A-a]
          Length = 380

 Score = 36.2 bits (82), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 76/182 (41%), Gaps = 2/182 (1%)

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           LFF  +DG  I+  L S         + K+   +   + S   G  I+A   G++    Y
Sbjct: 197 LFFMLKDGKKINPYLTSFMPPRLQNVFSKLLHDINIAVSSYVRGQLIVAFWVGVMFAVGY 256

Query: 234 WLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
              G+   + L ++ A + +IP  G  IS     I  ++   +     +F+   IE  I 
Sbjct: 257 TTIGLKYGLTLAILAACLNLIPYFGTLISLIPAIIIGILDSPVM-LLKIFVVFFIEQLIE 315

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            + + P ++G  +K+  + T   L+G     GLLG+     + A I +I  +     ++N
Sbjct: 316 GRFISPLVMGSKMKMNPVTTILLLIGANSVAGLLGVIFAIPIYAGIKIIVVQVFDYYRKN 375

Query: 353 KE 354
             
Sbjct: 376 SS 377


>gi|114332236|ref|YP_748458.1| hypothetical protein Neut_2276 [Nitrosomonas eutropha C91]
 gi|114309250|gb|ABI60493.1| protein of unknown function UPF0118 [Nitrosomonas eutropha C91]
          Length = 363

 Score = 36.2 bits (82), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 70/369 (18%), Positives = 153/369 (41%), Gaps = 31/369 (8%)

Query: 7   NPQGIMRWMIMFIILVS--LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +P     W +  I +VS  +Y L     P L A  I +   PI + ++  ++   T   V
Sbjct: 6   SPDSRFFWYLALIGIVSALIYLLSPILTPFLLAAGIAYICNPIVT-WLEVRKVPRTLSTV 64

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM--WASEL 122
              +  + +FI  +L +      E+  L+ ++          P +L  +   +  W   +
Sbjct: 65  FVMLMAIGIFITMILIMLPLFEKEISRLIERI----------PSFLDMLSNRLIPWVEGV 114

Query: 123 WTKHLSHPQSL--KILSETFLKTNGI--DFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
           +   L     +   +L+E +    G+    +P   S  G++ L + +++I + + LF+  
Sbjct: 115 FNIELQIDVDMLKDLLAEHWQSAGGVAARALPTLKSG-GLVILGFLINLILVPVVLFYLL 173

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKI---SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           RD   + +Q    GE + PA+ K+I   SR    V+     G   +     +   +  WL
Sbjct: 174 RDWNILIKQ---AGELIPPAWQKQIFTVSREADDVLAEFMRGEIAVITIMSIYYVTGLWL 230

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI--ELFIVD 293
            G+   + +G+++ ++  +P    I+   ++ +  +      ++ + +W  I     +  
Sbjct: 231 VGLEFSLPIGLLSGVLVFVPYLGTITGLTLATFAALTQFQEWSSIIIVWVVIGSGQLLEG 290

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE---SIMAIK 350
             + P LVG  I L  +   F L+   +  G +G+ +   + A++ V+ +      M + 
Sbjct: 291 MLITPRLVGERIGLHPVAVIFSLMAFGQLFGFIGILLALPISAILLVLLRHLHTQYMEVM 350

Query: 351 ENKEKISSN 359
           E+ E  ++ 
Sbjct: 351 EDDETRAAK 359


>gi|261405442|ref|YP_003241683.1| hypothetical protein GYMC10_1593 [Paenibacillus sp. Y412MC10]
 gi|329926788|ref|ZP_08281196.1| putative membrane protein [Paenibacillus sp. HGF5]
 gi|261281905|gb|ACX63876.1| protein of unknown function UPF0118 [Paenibacillus sp. Y412MC10]
 gi|328938988|gb|EGG35356.1| putative membrane protein [Paenibacillus sp. HGF5]
          Length = 355

 Score = 36.2 bits (82), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 79/359 (22%), Positives = 148/359 (41%), Gaps = 69/359 (19%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI-----ATV 68
           W++  + L    FLK   AP L A+II +   PI  +   +K   S  + +I      ++
Sbjct: 27  WLLRPLFLDVYRFLKAVLAPFLVAMIISYVLNPIVCTLSDRKVPRSIAVLLIYAVFLTSL 86

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +V+ + ++P+L      + +++EL       N+H   +P         M A  L T   S
Sbjct: 87  AVILINMIPML------IRQLEEL-------NEH---LPEL------SMNAQSLMTNLDS 124

Query: 129 H--PQSLK-------ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              P  ++       +  E+ L     DF+    +   ++F     +++ +   +F+  +
Sbjct: 125 RLLPPGVRTGVNSWFLQMESRLAGGISDFMDNIGNTINILF-----NVLIVPFLIFYILK 179

Query: 180 DGFSISQQ-----LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           D F + Q+     L            K+I   +   +R  FL   II    G++    Y 
Sbjct: 180 D-FEVFQRTAVSYLPRSRRKSIVTLLKEIDTALGNYVRGQFLVCLII----GVLAYVGYM 234

Query: 235 LAGVPSHVALGVITAIMAMIP------GGAP--ISFTAVSIYLLIKGNIFNATCLFLWGA 286
           + G+P  + L  I A+  +IP      G AP  +  + +S  +++   + N  C  L   
Sbjct: 235 IVGMPYALLLASIVAVFNIIPYLGPFLGAAPALVMASTISWRMVLLVAVVNMVCQTLESN 294

Query: 287 IELFIVDKTLRPFLVGGPIKL-PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           +        + P +VG  + + P L  F  LVGG +  G +GL +   + A+I V+ + 
Sbjct: 295 V--------ISPQVVGKKLHMHPLLIIFALLVGG-QVAGTVGLILAVPVFAVIKVLLQH 344


>gi|22537352|ref|NP_688203.1| hypothetical protein SAG1194 [Streptococcus agalactiae 2603V/R]
 gi|22534224|gb|AAN00076.1|AE014246_11 membrane protein, putative [Streptococcus agalactiae 2603V/R]
          Length = 396

 Score = 36.2 bits (82), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 111/267 (41%), Gaps = 26/267 (9%)

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA--SELWTKHLSHPQSLKILSETFLKT 143
           M ++   V+KV +     I    WL    G + +  S + ++ +S+       +E F K 
Sbjct: 119 MEDLPSYVNKVQMETSSFIDHNPWLKSYKGEISSMLSNISSQAVSY-------AEKFSK- 170

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           N +D+    AS    +     ++ I     LF+  RD  ++      +          +I
Sbjct: 171 NILDWAGNLASTVARV----TVATIMAPFILFYLLRDSRNMKNGFLMVLPTKLRQPTDRI 226

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISF 262
            R +   +     G  I+AI  G++    Y + G+   V LG+I  ++ M+P  G+ ++ 
Sbjct: 227 LREMNSQMSGYVQGQIIVAITVGVIFSIMYSIIGLRYGVTLGIIAGVLNMVPYLGSFVAQ 286

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR-----PFLVGGPIKLPFLPTFFGLV 317
             V I  L+ G +             +F++++TL      P ++G  + +  +   F L+
Sbjct: 287 IPVFILALVAGPVMVVKVAI------VFVIEQTLEGRFVSPLVLGNKLSIHPITIMFILL 340

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKE 344
                 G+ G+F+   + A I V+ KE
Sbjct: 341 TSGAMFGVWGVFLSIPIYASIKVVVKE 367


>gi|326563941|gb|EGE14191.1| hypothetical protein E9O_07758 [Moraxella catarrhalis 12P80B1]
          Length = 385

 Score = 36.2 bits (82), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 102/250 (40%), Gaps = 45/250 (18%)

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLS---------IIFMIIALFF-----FYRDGFSISQ 186
           L+ N   F+ RF S   M +L   L          ++  II LF       YR  F    
Sbjct: 136 LRDNPQQFLTRF-SDGAMAYLPTYLGGMVSGMGTLVVITIIGLFLAISPSVYRRSFVAMV 194

Query: 187 QLDSL--GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             DS    E+L    ++ + +          LG  ++    G+  G A WL G+P  +AL
Sbjct: 195 PKDSRDKAEYLLDRSYRSMQQ--------WLLGQLVVMAFVGIATGIALWLMGIPFALAL 246

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK----TLRPFL 300
           G I  ++  +P   P   +A+ I LL    +  +  + LW A+ + +V +     + P +
Sbjct: 247 GFIAFLLDFVPVLGP-WLSAIPILLL---TLIVSPKMLLWVALMIVVVQQLESYVISPIV 302

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE-----------SIMAI 349
               + LP +      V      G+LG+ +   LM ++ ++W +           ++  +
Sbjct: 303 QNRMVDLPPVALLLSQVIMGSITGILGIALATPLMVMV-IVWVQVLYIKFTLGDYAVRIL 361

Query: 350 KENKEKISSN 359
            +N+ ++ ++
Sbjct: 362 DQNESQMQAD 371


>gi|315653902|ref|ZP_07906818.1| permease [Lactobacillus iners ATCC 55195]
 gi|315488598|gb|EFU78244.1| permease [Lactobacillus iners ATCC 55195]
          Length = 380

 Score = 36.2 bits (82), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 76/182 (41%), Gaps = 2/182 (1%)

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           LFF  +DG  I+  L S         + K+   +   + S   G  I+A   G++    Y
Sbjct: 197 LFFMLKDGKKINPYLTSFMPPRLQNVFSKLLHDINIAVSSYVRGQLIVAFWVGVMFAVGY 256

Query: 234 WLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
              G+   + L ++ A + +IP  G  IS     I  ++   +     +F+   IE  I 
Sbjct: 257 TTIGLKYGLTLAILAACLNLIPYFGTLISLIPAIIIGILDSPVM-LLKIFVVFFIEQLIE 315

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            + + P ++G  +K+  + T   L+G     GLLG+     + A I +I  +     ++N
Sbjct: 316 GRFISPLVMGSKMKMNPVTTILLLIGANSVAGLLGVIFAIPIYAGIKIIVVQVFDYYRKN 375

Query: 353 KE 354
             
Sbjct: 376 SS 377


>gi|312874325|ref|ZP_07734356.1| putative membrane protein [Lactobacillus iners LEAF 2052A-d]
 gi|325911463|ref|ZP_08173875.1| putative membrane protein [Lactobacillus iners UPII 143-D]
 gi|325913113|ref|ZP_08175483.1| putative membrane protein [Lactobacillus iners UPII 60-B]
 gi|311090091|gb|EFQ48504.1| putative membrane protein [Lactobacillus iners LEAF 2052A-d]
 gi|325476813|gb|EGC79967.1| putative membrane protein [Lactobacillus iners UPII 143-D]
 gi|325477534|gb|EGC80676.1| putative membrane protein [Lactobacillus iners UPII 60-B]
          Length = 380

 Score = 36.2 bits (82), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 76/182 (41%), Gaps = 2/182 (1%)

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           LFF  +DG  I+  L S         + K+   +   + S   G  I+A   G++    Y
Sbjct: 197 LFFMLKDGKKINPYLTSFMPPRLQNVFSKLLHDINIAVSSYVRGQLIVAFWVGVMFAVGY 256

Query: 234 WLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
              G+   + L ++ A + +IP  G  IS     I  ++   +     +F+   IE  I 
Sbjct: 257 TTIGLKYGLTLAILAACLNLIPYFGTLISLIPAIIIGILDSPVM-LLKIFVVFFIEQLIE 315

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            + + P ++G  +K+  + T   L+G     GLLG+     + A I +I  +     ++N
Sbjct: 316 GRFISPLVMGSKMKMNPVTTILLLIGANSVAGLLGVIFAIPIYAGIKIIVVQVFDYYRKN 375

Query: 353 KE 354
             
Sbjct: 376 SS 377


>gi|259501038|ref|ZP_05743940.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
 gi|302190513|ref|ZP_07266767.1| permease [Lactobacillus iners AB-1]
 gi|329920543|ref|ZP_08277275.1| putative membrane protein [Lactobacillus iners SPIN 1401G]
 gi|259167732|gb|EEW52227.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
 gi|328936219|gb|EGG32672.1| putative membrane protein [Lactobacillus iners SPIN 1401G]
          Length = 380

 Score = 36.2 bits (82), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 76/182 (41%), Gaps = 2/182 (1%)

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           LFF  +DG  I+  L S         + K+   +   + S   G  I+A   G++    Y
Sbjct: 197 LFFMLKDGKKINPYLTSFMPPRLQNVFSKLLHDINIAVSSYVRGQLIVAFWVGVMFAVGY 256

Query: 234 WLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
              G+   + L ++ A + +IP  G  IS     I  ++   +     +F+   IE  I 
Sbjct: 257 TTIGLKYGLTLAILAACLNLIPYFGTLISLIPAIIIGILDSPVM-LLKIFVVFFIEQLIE 315

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            + + P ++G  +K+  + T   L+G     GLLG+     + A I +I  +     ++N
Sbjct: 316 GRFISPLVMGSKMKMNPVTTILLLIGANSVAGLLGVIFAIPIYAGIKIIVVQVFDYYRKN 375

Query: 353 KE 354
             
Sbjct: 376 SS 377


>gi|86145809|ref|ZP_01064138.1| hypothetical membrane spanning protein [Vibrio sp. MED222]
 gi|85836508|gb|EAQ54637.1| hypothetical membrane spanning protein [Vibrio sp. MED222]
          Length = 366

 Score = 36.2 bits (82), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 83/190 (43%), Gaps = 2/190 (1%)

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
           F  + AS  G +   +   II  IIA   F  +       +  L   L      ++ ++ 
Sbjct: 150 FASKMASILGSLGGGFVQFIISTIIA-GAFMSNADKCQTGVTHLVVRLTDGKGVELVQLS 208

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
              +RS   G+  +A+ + ++      +AGVP+     +   ++A+I     ++     I
Sbjct: 209 KSTVRSVVQGVIGVAVIQSIMSAIGLVIAGVPAAALWALAVLLVAIIQLPPILALLPAII 268

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           Y+    +   A+   +W  I +   D  L+P L+     +P L    G +GG+   G++G
Sbjct: 269 YMFSVESTLAASLFLVW-CILVSGSDAILKPVLLSRGSHIPMLVILLGALGGMAMSGIVG 327

Query: 328 LFIGPVLMAL 337
           LF+G V+++L
Sbjct: 328 LFVGAVILSL 337


>gi|229163339|ref|ZP_04291291.1| hypothetical protein bcere0009_41050 [Bacillus cereus R309803]
 gi|228620120|gb|EEK76994.1| hypothetical protein bcere0009_41050 [Bacillus cereus R309803]
          Length = 361

 Score = 36.2 bits (82), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 26/172 (15%)

Query: 188 LDSLGE--HLF----PAYWKKISRIVPKVIR----STFLGMTIIAIGEGLVLGSAYWLAG 237
           L   GE  H+F    P+ W+   +++ K I     S   G   + +  G V   ++W  G
Sbjct: 185 LKDYGEFYHIFWKLVPSKWRSTGQMLAKEIDKSLGSYIRGQLFVCLVLGGVSVLSFWFIG 244

Query: 238 VPSHVALGVITAIMAMIP------GGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIEL 289
           +   + LG+I  +  +IP      G  P    A  VS  LLIK  I  A   FL   I  
Sbjct: 245 MKYPLLLGIIIGVTDIIPYFGPILGAIPTLMIAATVSTSLLIKAGITIAILQFLESNI-- 302

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                 L P++VG  +++  +     L+ G    G++GL +   ++A+I  +
Sbjct: 303 ------LSPYIVGKSLRMHPVIIMLALLVGGEVAGIVGLLVSVPILAVIRTV 348


>gi|116872852|ref|YP_849633.1| integral membrane protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741730|emb|CAK20854.1| conserved integral membrane protein [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 345

 Score = 36.2 bits (82), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 30/163 (18%)

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
           KVI + F    IIA+   ++   A W+ G P  + L ++  ++ +IP  G  IS   ++I
Sbjct: 197 KVIEAQF----IIALVNAVLTTIALWILGFPQLMTLSIMVFLLGLIPVAGVIISLVPLTI 252

Query: 268 ------------YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                       Y+LI         + +  A+E ++    L P L+     LP   TF  
Sbjct: 253 IGYSIGGLEYIFYILI--------VVIIIHALESYV----LNPKLMSAKTNLPVFYTFII 300

Query: 316 LVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKEKIS 357
           L+ G    G+ GL +G PV+M  + V+   +    ++ K+ IS
Sbjct: 301 LIFGEHFFGIWGLIVGIPVVMFFLDVLGVTNQEEDEQLKDTIS 343


>gi|206970693|ref|ZP_03231645.1| membrane protein [Bacillus cereus AH1134]
 gi|206734329|gb|EDZ51499.1| membrane protein [Bacillus cereus AH1134]
          Length = 340

 Score = 36.2 bits (82), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 7/159 (4%)

Query: 198 AYW-KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
           AY+ ++ +R   KVI + FL    IA+  G++   A  + G P  + L V+  ++ +IP 
Sbjct: 185 AYFGERFARSFGKVIEAQFL----IAVVNGVLTVIALVILGFPQLLVLTVMVFLLGLIPV 240

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G  IS   + I     G +     + ++  +   +    L P  +     LP   TF  
Sbjct: 241 AGVIISLFPLCIIAYNVGGVMYVVYILVFITVIHALESYFLNPKFMSAKTNLPVFYTFMI 300

Query: 316 LVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENK 353
           L+     +G+ GL IG P+ + L+ V+   +   IK NK
Sbjct: 301 LIFSEHFLGIWGLIIGIPIFIFLLDVLDVNNDEPIKSNK 339


>gi|30264460|ref|NP_846837.1| hypothetical protein BA_4618 [Bacillus anthracis str. Ames]
 gi|47529918|ref|YP_021267.1| hypothetical protein GBAA_4618 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187282|ref|YP_030534.1| hypothetical protein BAS4286 [Bacillus anthracis str. Sterne]
 gi|49478624|ref|YP_038441.1| hypothetical protein BT9727_4123 [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141116|ref|YP_085713.1| hypothetical protein BCZK4134 [Bacillus cereus E33L]
 gi|165872760|ref|ZP_02217388.1| putative membrane protein [Bacillus anthracis str. A0488]
 gi|167636499|ref|ZP_02394796.1| putative membrane protein [Bacillus anthracis str. A0442]
 gi|167638692|ref|ZP_02396968.1| putative membrane protein [Bacillus anthracis str. A0193]
 gi|170689642|ref|ZP_02880824.1| putative membrane protein [Bacillus anthracis str. A0465]
 gi|170709393|ref|ZP_02899804.1| putative membrane protein [Bacillus anthracis str. A0389]
 gi|177653234|ref|ZP_02935486.1| putative membrane protein [Bacillus anthracis str. A0174]
 gi|190566844|ref|ZP_03019760.1| putative membrane protein [Bacillus anthracis Tsiankovskii-I]
 gi|196034451|ref|ZP_03101860.1| putative membrane protein [Bacillus cereus W]
 gi|218905585|ref|YP_002453419.1| hypothetical protein BCAH820_4470 [Bacillus cereus AH820]
 gi|225866372|ref|YP_002751750.1| hypothetical protein BCA_4502 [Bacillus cereus 03BB102]
 gi|227817169|ref|YP_002817178.1| hypothetical protein BAMEG_4655 [Bacillus anthracis str. CDC 684]
 gi|229601469|ref|YP_002868677.1| hypothetical protein BAA_4638 [Bacillus anthracis str. A0248]
 gi|254684146|ref|ZP_05148006.1| hypothetical protein BantC_09855 [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724683|ref|ZP_05186466.1| hypothetical protein BantA1_19790 [Bacillus anthracis str. A1055]
 gi|254736493|ref|ZP_05194199.1| hypothetical protein BantWNA_15131 [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741531|ref|ZP_05199218.1| hypothetical protein BantKB_11057 [Bacillus anthracis str. Kruger
           B]
 gi|254751370|ref|ZP_05203407.1| hypothetical protein BantV_02826 [Bacillus anthracis str. Vollum]
 gi|254757702|ref|ZP_05209729.1| hypothetical protein BantA9_05266 [Bacillus anthracis str.
           Australia 94]
 gi|301055899|ref|YP_003794110.1| membrane protein [Bacillus anthracis CI]
 gi|30259118|gb|AAP28323.1| putative membrane protein [Bacillus anthracis str. Ames]
 gi|47505066|gb|AAT33742.1| putative membrane protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181209|gb|AAT56585.1| membrane protein, putative [Bacillus anthracis str. Sterne]
 gi|49330180|gb|AAT60826.1| probable membrane protein [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|51974585|gb|AAU16135.1| probable membrane protein [Bacillus cereus E33L]
 gi|164711536|gb|EDR17085.1| putative membrane protein [Bacillus anthracis str. A0488]
 gi|167513540|gb|EDR88910.1| putative membrane protein [Bacillus anthracis str. A0193]
 gi|167528092|gb|EDR90889.1| putative membrane protein [Bacillus anthracis str. A0442]
 gi|170125692|gb|EDS94608.1| putative membrane protein [Bacillus anthracis str. A0389]
 gi|170666412|gb|EDT17193.1| putative membrane protein [Bacillus anthracis str. A0465]
 gi|172081516|gb|EDT66588.1| putative membrane protein [Bacillus anthracis str. A0174]
 gi|190561835|gb|EDV15804.1| putative membrane protein [Bacillus anthracis Tsiankovskii-I]
 gi|195992993|gb|EDX56952.1| putative membrane protein [Bacillus cereus W]
 gi|218540217|gb|ACK92615.1| putative membrane protein [Bacillus cereus AH820]
 gi|225785955|gb|ACO26172.1| putative membrane protein [Bacillus cereus 03BB102]
 gi|227003791|gb|ACP13534.1| putative membrane protein [Bacillus anthracis str. CDC 684]
 gi|229265877|gb|ACQ47514.1| putative membrane protein [Bacillus anthracis str. A0248]
 gi|300378068|gb|ADK06972.1| conserved hypothetical membrane protein [Bacillus cereus biovar
           anthracis str. CI]
          Length = 355

 Score = 36.2 bits (82), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 33/183 (18%)

Query: 188 LDSLGE--HLF----PAYWKKISRIVPKVIR----STFLGMTIIAIGEGLVLGSAYWLAG 237
           L   GE  H+F    P+ W+   +++ K I     S   G   + +  G V   ++W  G
Sbjct: 179 LKDYGEFYHIFWKLVPSKWRSTGQMLAKEIDKSLGSYIRGQLFVCLVLGGVSVLSFWFIG 238

Query: 238 VPSHVALGVITAIMAMIP------GGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIEL 289
           +   + LG+I  +  +IP      G  P    A  VS  LLIK  I  A        I  
Sbjct: 239 MKYPLLLGIIIGVTDIIPYFGPILGAIPALMIAATVSTSLLIKAGITIA--------ILQ 290

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI------W 342
           F+    L P++VG  +++  +     L+ G    G++GL I  PVL  +  VI      W
Sbjct: 291 FVESNILSPYIVGKSLRMHPVIIMLALLVGGEVAGIVGLLISVPVLAVIRTVIVHVRPLW 350

Query: 343 KES 345
           K+ 
Sbjct: 351 KKE 353


>gi|300119211|ref|ZP_07056908.1| hypothetical protein BCSJ1_23269 [Bacillus cereus SJ1]
 gi|298723431|gb|EFI64176.1| hypothetical protein BCSJ1_23269 [Bacillus cereus SJ1]
          Length = 355

 Score = 36.2 bits (82), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 33/183 (18%)

Query: 188 LDSLGE--HLF----PAYWKKISRIVPKVIR----STFLGMTIIAIGEGLVLGSAYWLAG 237
           L   GE  H+F    P+ W+   +++ K I     S   G   + +  G V   ++W  G
Sbjct: 179 LKDYGEFYHIFWKLVPSKWRSTGQMLAKEIDKSLGSYIRGQLFVCLVLGGVSVLSFWFIG 238

Query: 238 VPSHVALGVITAIMAMIP------GGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIEL 289
           +   + LG+I  +  +IP      G  P    A  VS  LLIK  I  A        I  
Sbjct: 239 MKYPLLLGIIIGVTDIIPYFGPILGAIPALMIAATVSTSLLIKAGITIA--------ILQ 290

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI------W 342
           F+    L P++VG  +++  +     L+ G    G++GL I  PVL  +  VI      W
Sbjct: 291 FVESNILSPYIVGKSLRMHPVIIMLALLVGGEVAGIVGLLISVPVLAVIRTVIVHVRPLW 350

Query: 343 KES 345
           K+ 
Sbjct: 351 KKE 353


>gi|291288291|ref|YP_003505107.1| hypothetical protein Dacet_2389 [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885451|gb|ADD69151.1| protein of unknown function UPF0118 [Denitrovibrio acetiphilus DSM
           12809]
          Length = 342

 Score = 36.2 bits (82), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 83/180 (46%), Gaps = 10/180 (5%)

Query: 172 IALFFFYRDGFSISQQL-DSLGEHLFPAYWKKISRIV---PKVIRSTFLGMTIIAIGEGL 227
           I +F+F +D   I+ ++ D+L       Y   I R +    K++ + F G  I+A   G+
Sbjct: 165 ILVFYFLKDFDRINTKIFDALNRK----YDNDIKRYITEFDKILSAYFRGQLIVAAILGV 220

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIK-GNIFNATCLFLWG 285
           +      + G+   V +G+++ +++++P  G  I F A  I   ++  +I +   +F+  
Sbjct: 221 LYTIILLVVGIKPAVLIGIVSGVLSVVPYLGFIIGFAASLILAFVQFQDILHPLMVFIGF 280

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           A+   I    + P +VG  + L      F L+ G    G+ G+ I   + A I ++  E 
Sbjct: 281 AVVQAIEGNLITPKIVGESLGLHPTAVIFALLAGGSLFGIGGMIIALPVAAFIKILLSEQ 340


>gi|251782288|ref|YP_002996590.1| hypothetical protein SDEG_0877 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390917|dbj|BAH81376.1| hypothetical protein SDEG_0877 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323127187|gb|ADX24484.1| hypothetical protein SDE12394_04950 [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 375

 Score = 36.2 bits (82), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 63/292 (21%), Positives = 123/292 (42%), Gaps = 45/292 (15%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           IA++S +  F  P           +KE+V+++    +H   + R +  I G    ++  T
Sbjct: 105 IASISTLTKFDTP----------SIKEVVNQL----EHNKLLARVIKYIGGDAKLTQTIT 150

Query: 125 KHLSHPQSLKILSETFLK------TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            +          S+  LK      TN +  +   AS    +F+ +  S+        +  
Sbjct: 151 SY----------SQQLLKQFIGVLTNILTSVTVIASAIINLFISFVFSL--------YVL 192

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS----AYW 234
            +  S+ +Q ++L +     Y ++I  +V  ++   F G  +    E ++LG+      +
Sbjct: 193 ANKESLCRQGNTLVDTYTGKYAQRIHYLV-DLLHHRFHGFFVSQTLEAMILGTLTTTGMF 251

Query: 235 LAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
           L  +P    +GV+ A  A+IP  GA I   A+   L++  ++  A    ++  I   I  
Sbjct: 252 LLQLPFAGTIGVLVAFTALIPVVGASIG-AAIGFVLIMTQSMSQAIVFIVFLIILQQIEG 310

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             + P +VGG I LP +     +  G    G++G+ I   L A +  + K++
Sbjct: 311 NFIYPRVVGGSIGLPAMWVLMAITIGASLRGIVGMIIAVPLAATLYQVIKDN 362


>gi|319649707|ref|ZP_08003863.1| hypothetical protein HMPREF1013_00467 [Bacillus sp. 2_A_57_CT2]
 gi|317398869|gb|EFV79551.1| hypothetical protein HMPREF1013_00467 [Bacillus sp. 2_A_57_CT2]
          Length = 352

 Score = 36.2 bits (82), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +++ L+ G++   T L +  A+ L I+ +T+ P ++G  I L  L T   +  G++ +G+
Sbjct: 266 ALFHLLTGDLAMGTQLAILAAV-LLIIRRTVEPKVMGTHIGLSPLATLIAMYLGLKLIGI 324

Query: 326 LGLFIGPVLM 335
           LG  IGP+L+
Sbjct: 325 LGFIIGPLLV 334


>gi|291296851|ref|YP_003508249.1| hypothetical protein Mrub_2478 [Meiothermus ruber DSM 1279]
 gi|290471810|gb|ADD29229.1| protein of unknown function UPF0118 [Meiothermus ruber DSM 1279]
          Length = 369

 Score = 36.2 bits (82), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 71/172 (41%), Gaps = 33/172 (19%)

Query: 105 PVPRWLSDIPGGMWASEL----WTKHLSHPQSLKILSETFLKT----------NGIDFIP 150
           P+  W+ ++P  +   EL            Q L+ L E F +T           G   + 
Sbjct: 110 PLLTWIENLPSRIGQVELPPALEGAFAQAAQGLQTLLEGFTQTLLQGLRALLAQGGSLVG 169

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA----YWKKISRI 206
            FAS  G +   +      +II+++  Y         L  + + LF A    Y   ++ I
Sbjct: 170 FFASLVGGVLQLFAA----LIISIYLLY--------DLPQISKTLFQAVPLPYQPFVADI 217

Query: 207 VPKVIRST---FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
             K+ R+      G  ++AI  GL++   +W+ GVP   +LG + A+  ++P
Sbjct: 218 AAKLDRAVGGYIRGQLLVAISVGLIVTVGFWICGVPLAGSLGFLAAVFNLVP 269


>gi|196044927|ref|ZP_03112161.1| putative membrane protein [Bacillus cereus 03BB108]
 gi|196024415|gb|EDX63088.1| putative membrane protein [Bacillus cereus 03BB108]
          Length = 355

 Score = 36.2 bits (82), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 33/183 (18%)

Query: 188 LDSLGE--HLF----PAYWKKISRIVPKVIR----STFLGMTIIAIGEGLVLGSAYWLAG 237
           L   GE  H+F    P+ W+   +++ K I     S   G   + +  G V   ++W  G
Sbjct: 179 LKDYGEFYHIFWKLVPSKWRSTGQMLAKEIDKSLGSYIRGQLFVCLVLGGVSVLSFWFIG 238

Query: 238 VPSHVALGVITAIMAMIP------GGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIEL 289
           +   + LG+I  +  +IP      G  P    A  VS  LLIK  I  A        I  
Sbjct: 239 MKYPLLLGIIIGVTDIIPYFGPILGAIPALMIAATVSTSLLIKAGITIA--------ILQ 290

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI------W 342
           F+    L P++VG  +++  +     L+ G    G++GL I  PVL  +  VI      W
Sbjct: 291 FVESNILSPYIVGKSLRMHPVIIMLALLVGGEVAGIVGLLISVPVLAVIRTVIVHVRPLW 350

Query: 343 KES 345
           K+ 
Sbjct: 351 KKE 353


>gi|170078569|ref|YP_001735207.1| hypothetical protein SYNPCC7002_A1964 [Synechococcus sp. PCC 7002]
 gi|169886238|gb|ACA99951.1| Protein of unknown function PF01594 [Synechococcus sp. PCC 7002]
          Length = 373

 Score = 36.2 bits (82), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 71/148 (47%), Gaps = 13/148 (8%)

Query: 194 HLFPAYWKK--ISRIVPKVIR--STFLGMTIIAIGEGLVLGSAYWLAGVPS-HVALGVIT 248
            LFPA W +  + ++ P   R  S   G  +++   G+V+     L G+    + LGVI 
Sbjct: 187 SLFPAPWDEQLLEQVQPMSERMGSYIQGRIVVSGILGIVITIGLRLLGISELALGLGVIA 246

Query: 249 AIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLF--LWGAIELFIVDKTLRPFLVGGP 304
           A+  +IP   P+  +  A+ + +   G  F +  L   L   +E +++D    P LVG  
Sbjct: 247 AVTNLIPFFGPVLGAVPALIVAIAQGGWTFLSVLLLFTLIQNLETYVLD----PLLVGSS 302

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
           +K+  L     ++GG + +G+LG  I P
Sbjct: 303 VKVNPLYQLLAVLGGAQVLGILGAVIVP 330


>gi|116332976|ref|YP_794503.1| permease [Lactobacillus brevis ATCC 367]
 gi|116098323|gb|ABJ63472.1| Predicted permease [Lactobacillus brevis ATCC 367]
          Length = 390

 Score = 36.2 bits (82), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 93/218 (42%), Gaps = 45/218 (20%)

Query: 138 ETFLKTNGIDFIPRFASRFGMIFL---DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
            T+    G++ +    S  G +     D+ ++II   + LFF  +DG             
Sbjct: 157 STYFSKRGLNLLTGTLSSLGNVVTTVSDWIITIITAPLVLFFMLKDGTR----------- 205

Query: 195 LFPAYWKKISRIVPKVIRSTFL---------------GMTIIAIGEGLVLGSAYWLAGVP 239
            FP Y   IS++VP   RS F+               G   +A+   ++  + Y + G+ 
Sbjct: 206 -FPHY---ISQVVPTAYRSRFVVMLDQMNVKVSSYVRGQLTVALCVLIIFTTGYSIIGLR 261

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD----- 293
             + +G++   + +IP  G+ I+        LI G + + + L   G + +++++     
Sbjct: 262 YALLIGLLAGPLNLIPYFGSAIALVPA----LIMGVVTSPSMLL--GVVIVYLIEWVLET 315

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
           + L P ++G  + +  +   F L+ G +  GL+G+  G
Sbjct: 316 QVLSPLIMGNSLAMHPITIVFVLLAGGKMFGLVGVIFG 353


>gi|229017259|ref|ZP_04174165.1| UPF0118 membrane protein [Bacillus cereus AH1273]
 gi|229023432|ref|ZP_04179933.1| UPF0118 membrane protein [Bacillus cereus AH1272]
 gi|228737880|gb|EEL88375.1| UPF0118 membrane protein [Bacillus cereus AH1272]
 gi|228744049|gb|EEL94145.1| UPF0118 membrane protein [Bacillus cereus AH1273]
          Length = 339

 Score = 36.2 bits (82), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 7/159 (4%)

Query: 198 AYW-KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
           AY+ ++ +R   KVI + FL    IA+   ++   A  + G P  + L V+  ++ +IP 
Sbjct: 185 AYFGERFARSFGKVIEAQFL----IAVVNCVLTVIALVILGFPQLLVLAVMVFLLGLIPV 240

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G  IS   + I     G +     + ++  I   +    L P  +     LP   TF  
Sbjct: 241 AGVIISLFPLCIIAYNVGGVMYVVYILVFITIIHALESYFLNPKFMSAKTNLPVFYTFMI 300

Query: 316 LVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENK 353
           L+     +G+ GL IG P+ + L+ V+   +  +IK NK
Sbjct: 301 LIFSEHFLGIWGLIIGIPIFIFLLDVLDVNNDKSIKSNK 339


>gi|257439067|ref|ZP_05614822.1| conserved hypothetical protein [Faecalibacterium prausnitzii
           A2-165]
 gi|257198445|gb|EEU96729.1| conserved hypothetical protein [Faecalibacterium prausnitzii
           A2-165]
          Length = 379

 Score = 36.2 bits (82), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 84/182 (46%), Gaps = 14/182 (7%)

Query: 189 DSLGEH---LFPAYWK--------KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
           +SL  H   L  AY K        K  R+  +   +   G    A+  G+++  A+ +  
Sbjct: 194 ESLCHHARTLVCAYLKPSHSAWLLKFCRLFRQSFANFLTGQCSEAVILGVLMALAFSVFK 253

Query: 238 VPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           +P    +G++TAI A+IP  GA IS       +L+   +    CL ++ A++ FI ++ +
Sbjct: 254 IPYGSLVGMLTAICAIIPYVGALISCVVSVFLVLLVDPVLAVRCLIVYLAVQ-FIENQFI 312

Query: 297 RPFLVGGPIKL-PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            P +VG  + L P       ++GG     +  +F  P+   +I ++ +++   I+  + +
Sbjct: 313 YPRVVGKSVGLSPLYTLVAAMIGGELFGIIGIIFFIPLTAVIIELVKEDACRRIQARESQ 372

Query: 356 IS 357
            S
Sbjct: 373 RS 374


>gi|229093461|ref|ZP_04224564.1| hypothetical protein bcere0021_41850 [Bacillus cereus Rock3-42]
 gi|228689932|gb|EEL43736.1| hypothetical protein bcere0021_41850 [Bacillus cereus Rock3-42]
          Length = 361

 Score = 36.2 bits (82), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 77/183 (42%), Gaps = 33/183 (18%)

Query: 188 LDSLGE--HLF----PAYWKKISRIVPKVIR----STFLGMTIIAIGEGLVLGSAYWLAG 237
           L   GE  H+F    P+ W+   +++ K I     S   G   + +  G V   ++W  G
Sbjct: 185 LKDYGEFYHIFWKLVPSKWRSTGQMLAKEIDKSLGSYIRGQLFVCLVLGGVSVLSFWFIG 244

Query: 238 VPSHVALGVITAIMAMIP------GGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIEL 289
           +   + LG+I  +  +IP      G  P    A  VS  LLIK  +  A        I  
Sbjct: 245 MKYPLLLGIIIGVTDIIPYFGPILGAIPALMIAATVSTSLLIKAGVTIA--------ILQ 296

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI------W 342
           F+    L P++VG  +++  +     L+ G    G++GL I  PVL  +  VI      W
Sbjct: 297 FVESNILSPYIVGKSLRMHPVIIMLALLVGGEVAGIVGLLISVPVLAVIRTVIVHVRPLW 356

Query: 343 KES 345
           K+ 
Sbjct: 357 KKE 359


>gi|330863271|emb|CBX73396.1| putative permease perM [Yersinia enterocolitica W22703]
          Length = 338

 Score = 36.2 bits (82), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 120/271 (44%), Gaps = 44/271 (16%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGF-TSWP---IYSSFISKKEE 57
           R    +PQ I   +I+      LYF  G  AP+L+A+++ +   WP   +     S+   
Sbjct: 10  RRRFTDPQVIALLVILLAGFCILYFFSGILAPLLAAIVLAYLLEWPTARLQRIGCSRPWA 69

Query: 58  SSTFLAVIATVSVMCLFIV-PLLFLFYYGML-EMKELVSKVVLANQHGIPVP-RWLSDIP 114
           +S  L V   ++++ +F+V P ++     +L +M ++++K    N     +P R+ + + 
Sbjct: 70  ASIVLVVFGGIALLAVFVVAPTVWQQGNNLLSDMPKMLNKF---NAFAQTLPARYPALVD 126

Query: 115 GG---MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
            G   M A  L +K       L  + E+ +K +        AS  G++ L   + +I + 
Sbjct: 127 AGIVDMMAENLRSK-------LSGMGESVVKFS-------LASLIGLLTL--AIYLILVP 170

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFP-------AYWKKISRIVPKVIRSTFLGMTIIAIG 224
           + LFF  +D     +Q+ +    + P         W ++++ +   IR   L M ++ + 
Sbjct: 171 LMLFFLLKD----KEQMLNAVRRILPRNRGLAGQVWLEMNQQITNYIRGKVLEMVVVGVA 226

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
             LV    +++ G+   + L V+     +IP
Sbjct: 227 TYLV----FFVLGMNYALLLAVLVGFSVLIP 253


>gi|317063451|ref|ZP_07927936.1| permease [Fusobacterium ulcerans ATCC 49185]
 gi|313689127|gb|EFS25962.1| permease [Fusobacterium ulcerans ATCC 49185]
          Length = 333

 Score = 36.2 bits (82), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 92/214 (42%), Gaps = 26/214 (12%)

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
           FI  F + F ++  +Y +  I  I+A+ F    G  +S  L+     L    W +I    
Sbjct: 131 FIGFFLAVFILLDKEYFIRFIKNILAIIFGKEKGMYLSDFLNQSRNVLLNYVWGRI---- 186

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
              I S F+G+    +          +LAGVP  +   ++  +  MIP    I   A++I
Sbjct: 187 ---IASAFVGVITFVV---------LFLAGVPYALLSSLMIGMGNMIPYVGSIVAGAIAI 234

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI--KLPFLPTFFGLVG---GVRT 322
           +L+I         LFL       I+ +T+  ++VG  I  +   + TF+ +V    G   
Sbjct: 235 FLVILAEPSKIGYLFL-----AMIIGQTVDGWIVGPKIVSETVGMSTFWVIVAVLIGGSV 289

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           MG +G+F G     +I +I++  +  I+     I
Sbjct: 290 MGPMGMFFGVPAFGIIKLIYETQLKKIENGSTNI 323


>gi|158338720|ref|YP_001519897.1| hypothetical protein AM1_5628 [Acaryochloris marina MBIC11017]
 gi|158308961|gb|ABW30578.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 385

 Score = 36.2 bits (82), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 4/171 (2%)

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
           LD  + ++  II  F+  + G    +  DSL + L     + +S  +    ++ F+G  +
Sbjct: 172 LDILIDVLVTIILTFYLLQHG---DELWDSLIDWLPEESQQPVSETLRSSFQNYFIGQLL 228

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC 280
             I    VL   + +  VP  +  G+    MA+IP G  +    V+  + ++ NI+    
Sbjct: 229 FGICMTSVLVPTFLILKVPFGLLFGLTIGTMALIPFGGTVGIILVTCLVTLQ-NIWLGLK 287

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
           L     +   I+D  + P ++G    L     F  ++ G +  GL+G+ I 
Sbjct: 288 LLAAAVVVQQILDNLVAPRILGTMTGLNPAWVFISILIGAKAGGLIGVVIA 338


>gi|223039328|ref|ZP_03609617.1| acid membrane antigen A [Campylobacter rectus RM3267]
 gi|222879389|gb|EEF14481.1| acid membrane antigen A [Campylobacter rectus RM3267]
          Length = 346

 Score = 35.8 bits (81), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 71/324 (21%), Positives = 136/324 (41%), Gaps = 29/324 (8%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           Y  K F   +  A ++   +  I   F+   +   T  A + T+ +  LFI P    F Y
Sbjct: 20  YLFKPFLLNIFIAALLAVATSNINVKFLQLTKGKKTLSAALTTIVLFSLFIAP----FLY 75

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            ++E+         A+ +   V   L     G +      K +  P+  +I+++  +K  
Sbjct: 76  AVIEIARNA-----ASFNTSYVTNTLDYFQSGNFQLPEPIKFM-EPKIKEIIADIDVKAI 129

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS---LGEHLFPAYWK 201
             + I   A   G   +++ + ++F+++  FF    G  ++  L S   + E        
Sbjct: 130 SANIIANLAG-IGKSSVNFLIDMVFILVFFFFAILYGSELAGYLKSALPMKESESEFILS 188

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPI 260
           ++  ++  V+ S  L     AI +G +        G    + +G+I A  ++IP  G  +
Sbjct: 189 EVVNVMSVVLYSIVLN----AILQGCLFAIIMISYGYNGFL-MGIIFAFTSLIPVVGGLL 243

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPF--------LVGGPIKLPFLP 311
           ++  +S+Y    GN   A  + ++  + + IV D  L+P         LV  P K+  L 
Sbjct: 244 AWGPISLYEFANGNTAAAVVIAVYTVVVISIVADTFLKPIVIKFINDRLVKIPAKINELL 303

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLM 335
            FF ++ G+ T G  GL +GP ++
Sbjct: 304 IFFSMIAGISTFGFWGLILGPAIV 327


>gi|320546652|ref|ZP_08040964.1| permease [Streptococcus equinus ATCC 9812]
 gi|320448707|gb|EFW89438.1| permease [Streptococcus equinus ATCC 9812]
          Length = 371

 Score = 35.8 bits (81), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 51/231 (22%), Positives = 99/231 (42%), Gaps = 22/231 (9%)

Query: 132 SLKILSETF-LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           S +IL++   + TN +  +   AS    +F+ +  SI        +       + +Q + 
Sbjct: 152 SKQILNQVLAVLTNILTSVSTIASTLLNVFISFVFSI--------YVLASKEQLGRQFNL 203

Query: 191 LGEHLFPAYWKKIS---RIVPKVIRSTFLGMTIIAIGEGLVLGS----AYWLAGVPSHVA 243
           L +     Y K +     I+ K     F+G T+    E ++LGS      +L  +P    
Sbjct: 204 LIDSYLGKYAKTVHYVLDILHKRFHGFFVGQTL----EAMILGSLTAIGMFLFKLPYAAT 259

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           +G++ A  A+IP  GA I  T +   L+   ++  A    ++  +        + P +VG
Sbjct: 260 IGILVAFTALIPVVGAYIGVT-IGFILIATQDVSQAIFFVIYLVVLQQFEGNIIYPRVVG 318

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G I LP +     +  G    G+LG+ +   L A +  + K+++   ++N+
Sbjct: 319 GSIGLPGMWVLMAITIGASLWGVLGMLVAVPLAASLYQMIKDNVAKRQKNR 369


>gi|229543555|ref|ZP_04432615.1| sporulation integral membrane protein YtvI [Bacillus coagulans
           36D1]
 gi|229327975|gb|EEN93650.1| sporulation integral membrane protein YtvI [Bacillus coagulans
           36D1]
          Length = 372

 Score = 35.8 bits (81), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 86/189 (45%), Gaps = 18/189 (9%)

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG-----MTII 221
           +IF ++A FF  +D      QL   G+ L P   +K    V   +R+   G     +T+I
Sbjct: 179 LIFALLATFFISKDW----NQLTGKGKLLLPKKARKSGITVFADLRNALFGFVRAELTLI 234

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNI---FN 277
           ++   +VL     L  V   + + ++  I+ ++P  G  + F    IY  I G++     
Sbjct: 235 SMTLVIVLIGLLILR-VDYAITIALVCGIVDILPYLGTGVVFVPWIIYEFITGSLPLAIG 293

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
            T L+    I + +  + + P ++   I +  L T   L  G +T+G LGL +GP+ + L
Sbjct: 294 LTVLY----IVVIVQRQIMEPKILSSSIGMNPLATLIALFIGFKTVGFLGLILGPITLVL 349

Query: 338 IAVIWKESI 346
           +  + +  +
Sbjct: 350 LTALIRAHV 358


>gi|255037065|ref|YP_003087686.1| hypothetical protein Dfer_3310 [Dyadobacter fermentans DSM 18053]
 gi|254949821|gb|ACT94521.1| protein of unknown function UPF0118 [Dyadobacter fermentans DSM
           18053]
          Length = 354

 Score = 35.8 bits (81), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 70/143 (48%), Gaps = 8/143 (5%)

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           +  +I+S  +G+ +      ++  +   +  V   + LGV+ AI+ ++P    +  TA++
Sbjct: 172 IKSIIQSYMVGLLLETTAVAVLNSAGLLVLNVQYAILLGVMAAILNLVPYIGGLVATALA 231

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIV-----DKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           + +     I +     L G + +FIV     +  L PF+VG  +K+  L +  G++ G  
Sbjct: 232 VMVTF---ISHPEIDVLLGVVGIFIVVQIIDNNFLVPFIVGSKVKINALVSIVGVLVGGA 288

Query: 322 TMGLLGLFIGPVLMALIAVIWKE 344
             GL G+F+    +A++ VI+  
Sbjct: 289 LAGLSGMFLSIPAIAMMKVIFDR 311


>gi|228994155|ref|ZP_04154055.1| hypothetical protein bpmyx0001_48780 [Bacillus pseudomycoides DSM
           12442]
 gi|229000224|ref|ZP_04159793.1| hypothetical protein bmyco0003_47770 [Bacillus mycoides Rock3-17]
 gi|229007747|ref|ZP_04165338.1| hypothetical protein bmyco0002_46250 [Bacillus mycoides Rock1-4]
 gi|228753517|gb|EEM02964.1| hypothetical protein bmyco0002_46250 [Bacillus mycoides Rock1-4]
 gi|228759556|gb|EEM08533.1| hypothetical protein bmyco0003_47770 [Bacillus mycoides Rock3-17]
 gi|228765607|gb|EEM14261.1| hypothetical protein bpmyx0001_48780 [Bacillus pseudomycoides DSM
           12442]
          Length = 344

 Score = 35.8 bits (81), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 6/159 (3%)

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GG 257
           + KK +R   KVI + FL    IAI   ++   A W+ G P  + L ++  ++ +IP  G
Sbjct: 190 FGKKFARSFGKVIEAQFL----IAIVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAG 245

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
             IS   + +     G+I     + +  A+   +    L P  +     LP   TF  L 
Sbjct: 246 VIISLVPLCMIAYNIGSITYVVYILIIVAVIHALESYVLNPKFMSQKTNLPIFYTFMVLT 305

Query: 318 GGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKEK 355
                +G+ GL IG P+ + L+ V+   S    K++ +K
Sbjct: 306 FSEHFLGVWGLIIGIPIFVFLLDVLDVTSDEIEKDSAKK 344


>gi|310644432|ref|YP_003949191.1| hypothetical membrane protein [Paenibacillus polymyxa SC2]
 gi|309249383|gb|ADO58950.1| Hypothetical membrane protein [Paenibacillus polymyxa SC2]
          Length = 381

 Score = 35.8 bits (81), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 82/172 (47%), Gaps = 8/172 (4%)

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV---IRSTFLGMTIIAIGEGLVLG 230
           LF+  +DG  + Q +  +   L P + K+  RI+ ++   + S   G  I++   G++L 
Sbjct: 193 LFYLLKDGHKLPQWILKM---LPPMFRKETDRIMTEMNHQVSSYIRGQIIVSFCIGVLLY 249

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
             Y + G+   + L VI +  +++P   P I+ T   I  ++   I     + +W  ++L
Sbjct: 250 IGYLIIGLDYSLTLAVIASFTSVVPYLGPVIAITPALIVAIVTSPIMLLKMVIVWTVVQL 309

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            I  K + P ++G  +++  +   F ++      G++G+ +     A++ VI
Sbjct: 310 -IEGKFISPQIMGKSLRVHPITIIFVILTAGNLFGVVGIVLAVPGYAVLKVI 360


>gi|32475947|ref|NP_868941.1| membrane protein- a permease [Rhodopirellula baltica SH 1]
 gi|32446490|emb|CAD76326.1| putative membrane protein-putative a permease [Rhodopirellula
           baltica SH 1]
          Length = 384

 Score = 35.8 bits (81), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           V + +RS     T+I++  G+V G A WL GVP  +  G++  ++  IP   PI
Sbjct: 218 VDRQVRSYLFVKTMISLATGIVFGMALWLFGVPMALTFGLLAFLLNYIPNIGPI 271


>gi|209559329|ref|YP_002285801.1| hypothetical protein Spy49_0794 [Streptococcus pyogenes NZ131]
 gi|209540530|gb|ACI61106.1| Membrane protein, putative [Streptococcus pyogenes NZ131]
          Length = 393

 Score = 35.8 bits (81), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 91/221 (41%), Gaps = 10/221 (4%)

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           L+H     +        N ID+   FA     I     ++II     LF+F RD   +  
Sbjct: 153 LTHTSQKALDYAQSFSKNAIDWAGNFAGAIARI----TVAIIISPFILFYFLRDSSHMKN 208

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L ++          ++   + K +     G   +AI  G +    + L G+   +  G+
Sbjct: 209 GLVNVLPLKLRVPMVRVLGDINKQLSGYVQGQVTVAIVVGFMFSIMFSLVGLKYAITFGI 268

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGN--IFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           I   + MIP  G+ ++   V I  +++G   +F    +F+   IE  I  + + P ++G 
Sbjct: 269 IAGFLNMIPYLGSFLAMIPVVIMAMVQGPFMLFKVLVIFM---IEQTIEGRFVAPLVLGN 325

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            + +  +   F L+      G+ G+F+   + A + V+ KE
Sbjct: 326 KLSIHPITIMFLLLTAGSMFGVWGVFLVIPIYASVKVVIKE 366


>gi|194017243|ref|ZP_03055855.1| sporulation integral membrane protein YtvI [Bacillus pumilus ATCC
           7061]
 gi|194011111|gb|EDW20681.1| sporulation integral membrane protein YtvI [Bacillus pumilus ATCC
           7061]
          Length = 372

 Score = 35.8 bits (81), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 90/210 (42%), Gaps = 19/210 (9%)

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
           TFL +  ++ IP F      +  D   +++F  +A FF  +D F+    L   G  +FPA
Sbjct: 156 TFL-SKTLELIPAFLG----LLPDAAATLLFSALATFFITKDWFT----LKKYGSRIFPA 206

Query: 199 YWKKISRIVPKVIRSTFLG----MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            W + +R +   I+    G      ++      ++     +  V   + + +    + ++
Sbjct: 207 KWMQHTRAILSEIKKAITGFMKAQLLLVAMTIGLVIIGLIILKVEHALVIALCIGFVDLL 266

Query: 255 PG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P  G+   F    IY  + GN+  A  L +   I + I  +   P ++   I L  L T 
Sbjct: 267 PYIGSGTVFLPWIIYSAMTGNLSLAIGLGIL-YIVVLIQRQISEPKVLSKSIGLNPLATL 325

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             L  G++ +G LGL IGP  +    V+W+
Sbjct: 326 VALFVGLKWLGFLGLVIGPASL----VVWQ 351


>gi|125717110|ref|YP_001034243.1| permease, putative [Streptococcus sanguinis SK36]
 gi|322377490|ref|ZP_08051981.1| putative membrane protein [Streptococcus sp. M334]
 gi|125497027|gb|ABN43693.1| Permease, putative [Streptococcus sanguinis SK36]
 gi|321281690|gb|EFX58699.1| putative membrane protein [Streptococcus sp. M334]
          Length = 298

 Score = 35.8 bits (81), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 108/260 (41%), Gaps = 9/260 (3%)

Query: 100 NQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG-IDFIPRFASRFGM 158
           +Q G  +   L+ +   + +SE  TK +       I  ++   +   I F+    S  G 
Sbjct: 40  SQLGAVLSTVLTQLGKLLDSSEFVTKDMLSTIVSGIQGQSSSISQALITFLSGLTSNIGN 99

Query: 159 IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP----AYWKKISRIVPKVIRST 214
           IF    ++   +I+  F F      ++     L + +FP         I ++  +     
Sbjct: 100 IF-SSIMNAFLIIVFTFLFLSSKEHLAAMTSRLLKVIFPEKVVTKLTYIGQVALETYDQF 158

Query: 215 FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKG 273
            +   I A+  G+++   Y L G+P  V  G+   +++ IP   P I+    +I++    
Sbjct: 159 LMSQLIEAVIIGVMIAVGYSLFGLPYGVMTGIFAGVLSFIPYVGPMIACVVGAIFIFTVS 218

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
                  L L+  I+L I    + P +VG  I LP + T      G    GLLG+     
Sbjct: 219 PTQALLSLLLYQVIQL-IEGNLIYPRVVGQSIGLPAIFTLAAASIGGNLFGLLGMIFFTP 277

Query: 334 LMALIAVIWKESIMAIKENK 353
           + A+I  + KE ++A KEN+
Sbjct: 278 IFAVIYRLVKEFVVA-KENQ 296


>gi|308071200|ref|YP_003872805.1| hypothetical protein PPE_04507 [Paenibacillus polymyxa E681]
 gi|305860479|gb|ADM72267.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 387

 Score = 35.8 bits (81), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 77/162 (47%), Gaps = 8/162 (4%)

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV---IRSTFLGMTIIAIGEGLVLG 230
           LF+  +DG  + Q +  +   L P + K+ +RI+ ++   + S   G  I++   G +L 
Sbjct: 193 LFYLLKDGHKLPQFILKM---LPPMFRKETNRIMNEMNHQVSSYIRGQIIVSFCIGALLY 249

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
             Y + G+   + L VI +  +++P   P I+ T   I  L+   I     + +W  ++L
Sbjct: 250 IGYLIIGLDYSLTLAVIASFTSVVPYLGPVIAITPALIVALVTSPIMLLKMVIVWTVVQL 309

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
            I  K + P ++G  +++  +   F ++      G++G+ + 
Sbjct: 310 -IEGKFISPQIMGKSLRVHPITIIFVILTAGNLFGVVGIVLA 350


>gi|302392357|ref|YP_003828177.1| sporulation integral membrane protein YtvI [Acetohalobium
           arabaticum DSM 5501]
 gi|302204434|gb|ADL13112.1| sporulation integral membrane protein YtvI [Acetohalobium
           arabaticum DSM 5501]
          Length = 352

 Score = 35.8 bits (81), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 83/185 (44%), Gaps = 24/185 (12%)

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG-----------MT 219
           +I+ FF  RD   I+Q +       FP  W K    +   I S  +G            T
Sbjct: 171 LISTFFISRDKELINQTI----LRAFPRPWHKNINKLESEIMSAAIGFIRAELILISITT 226

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNA 278
           ++ I   L+LGS Y        ++LG++  ++ +IP  G  +     + Y +I G+I   
Sbjct: 227 VLMITGLLLLGSDY-------AISLGLVAGLLDLIPVIGPSLVILPWAGYSMIIGDISFG 279

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             L L   I + ++ + +   ++G  I +  L T   +  GV+ +G+ G FIGP ++ L+
Sbjct: 280 VSL-LAVLITVAVIRQLVEAKVIGENIGIHPLATLISMYLGVQILGIGGFFIGPAILILL 338

Query: 339 AVIWK 343
             I +
Sbjct: 339 RAIIR 343


Searching..................................................done


Results from round 2




>gi|254780223|ref|YP_003064636.1| ABC transporter permease [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254039900|gb|ACT56696.1| ABC transporter permease [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 360

 Score =  328 bits (841), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 360/360 (100%), Positives = 360/360 (100%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST
Sbjct: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS
Sbjct: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD
Sbjct: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS
Sbjct: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL
Sbjct: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF
Sbjct: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360


>gi|195970204|ref|NP_384592.2| ABC transporter permease [Sinorhizobium meliloti 1021]
 gi|187904139|emb|CAC41923.2| Probable permease [Sinorhizobium meliloti 1021]
          Length = 436

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 177/356 (49%), Positives = 232/356 (65%), Gaps = 2/356 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++ P    RW+++ I+L  +YF  GF  PVL+A++IGF SWPIY   +     + T 
Sbjct: 70  RSALVVPISAARWLLVLILLCGVYFFHGFLVPVLAAVVIGFASWPIYWRLLQGLNGNRTL 129

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWAS 120
            A IA +SV+   +VP+     Y + E+++ +   V  N +G P P WL+ IP  G W  
Sbjct: 130 AATIAIISVVAFIVVPISLAAIYAVEEVRDWLVWAVATNANGAPAPAWLATIPAVGAWLG 189

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E W K++ HP +L  L +    +N  + I R     G       L+++FM+I LFF YRD
Sbjct: 190 EQWVKYVGHPGALGELVQLVSGSNIGN-IYRGVLVVGASAFQSFLTLLFMLITLFFVYRD 248

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G S S+QLD LGE +FP  W+++SR+VP  I ST  GM IIAIGEG+VLG AYWLAGVPS
Sbjct: 249 GQSFSKQLDHLGERIFPMRWERLSRVVPLTISSTVTGMGIIAIGEGIVLGVAYWLAGVPS 308

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            V LG++T IMA+IPGGAP+ FT VS+YL+  G+  +   LF WG  ELFIVDKTLRP L
Sbjct: 309 PVTLGILTGIMALIPGGAPLCFTLVSVYLVASGSPVHGIALFTWGTTELFIVDKTLRPRL 368

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           VGGPIKLPFLPTFFGL+GGV+TMG LGLF+GPVLMAL+  IW+E +  +    E  
Sbjct: 369 VGGPIKLPFLPTFFGLIGGVKTMGFLGLFVGPVLMALLVAIWREWLREVTSQPEPP 424


>gi|260466876|ref|ZP_05813060.1| protein of unknown function UPF0118 [Mesorhizobium opportunistum
           WSM2075]
 gi|259029378|gb|EEW30670.1| protein of unknown function UPF0118 [Mesorhizobium opportunistum
           WSM2075]
          Length = 413

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 172/360 (47%), Positives = 231/360 (64%), Gaps = 2/360 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R  ++ P    RW+++ I+   +YF  GF  PVL+AL+I F SWP+Y   ++    + T
Sbjct: 31  LRSAVIPPLSAARWLLVLIVAAGVYFFHGFLFPVLAALVIAFASWPLYRRLLASVGGNRT 90

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWA 119
             A  A + ++   ++P+     Y + E++E V   +  N+HG   P W++ +P  G W 
Sbjct: 91  IAATFAILFILAFLVIPIALAGTYAINEVREWVGWAIETNRHGATTPHWIATLPVIGEWL 150

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           +E WT +  HP  +  L +  +    I  I R     G       L+++FM+IALFF YR
Sbjct: 151 NEQWTDNFGHPGGIGELIQ-LISGANIGSIYRGVLAAGGSAFGLLLTLLFMMIALFFAYR 209

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG   + Q+D LGE + P  W++ISR+VP  I ST  GMT+IAIGEGLVLG AYWLAGVP
Sbjct: 210 DGEHFAGQVDRLGERILPTRWERISRVVPATISSTVTGMTVIAIGEGLVLGIAYWLAGVP 269

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           S V LG +T +MA+IPGGAP+SFT VSIYL   G+      LFLWGA+ELFIVDKTLRP 
Sbjct: 270 SPVTLGALTGVMALIPGGAPLSFTLVSIYLAASGSPMAGLALFLWGAVELFIVDKTLRPK 329

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           LVGGPIKLPFLPTFFGL+GGV+TMG LGLFIGPVLMAL+  IW+E +  ++   E  + +
Sbjct: 330 LVGGPIKLPFLPTFFGLIGGVKTMGFLGLFIGPVLMALLVAIWREWLREVELADETAADS 389


>gi|315122337|ref|YP_004062826.1| ABC transporter permease [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495739|gb|ADR52338.1| ABC transporter permease [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 361

 Score =  275 bits (703), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 258/353 (73%), Positives = 293/353 (83%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           MRE +LNPQ IMRW I+FI+L  +YFLKGFFAPVL+ALIIGF SWPIYS FISK+E+S T
Sbjct: 1   MREIILNPQRIMRWTIIFIVLACIYFLKGFFAPVLTALIIGFASWPIYSLFISKEEKSFT 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A IAT++V+ LFI+PLLF  YY  LE+K L S V L N+ GIP P WLS IPGG   +
Sbjct: 61  LEATIATLTVILLFIIPLLFFSYYTTLEIKNLASYVALVNEKGIPKPSWLSHIPGGGVWA 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            LWTK+LS PQSL  L+E  L TNG  F  +F S F     DY LSIIFM+IALFFFYRD
Sbjct: 121 GLWTKYLSPPQSLMTLTENILTTNGTQFTLKFVSYFSNCIFDYLLSIIFMLIALFFFYRD 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G S+S QLDSLG +L P YW+KISRI+P+VIRSTF+GMT+IAIGEGLVLGSAYW+AGVPS
Sbjct: 181 GLSMSLQLDSLGGYLLPVYWEKISRIIPRVIRSTFVGMTVIAIGEGLVLGSAYWIAGVPS 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           + ALGVITAIMAMIPGGAP+SFT VSIYL+IKG+I NA  LF WGAIELFIVDKTLRPFL
Sbjct: 241 YTALGVITAIMAMIPGGAPVSFTVVSIYLVIKGSITNAILLFSWGAIELFIVDKTLRPFL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           VGGPI+LPFLPTFFGLVGGVRTMGLLGLFIGPV+MAL+ VIWKESI+AI+EN 
Sbjct: 301 VGGPIRLPFLPTFFGLVGGVRTMGLLGLFIGPVIMALMTVIWKESILAIRENN 353


>gi|13476905|ref|NP_108474.1| hypothetical protein mlr8361 [Mesorhizobium loti MAFF303099]
 gi|14027666|dbj|BAB53935.1| mlr8361 [Mesorhizobium loti MAFF303099]
          Length = 411

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 172/351 (49%), Positives = 230/351 (65%), Gaps = 2/351 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R  ++ P    RW+++ I+   +YF  GF  PVL+AL+I F SWP+Y   ++    + T
Sbjct: 29  LRSAVIPPLSAARWLLVLIVAAGVYFFHGFLFPVLAALVIAFASWPLYQRLLAGVGGNRT 88

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWA 119
             A +A + ++   ++P+     Y + E++E V   +  N+HG   P W++ +P  G W 
Sbjct: 89  IAATLAILFILAFLVIPIALAGTYAINEVREWVGWAIETNRHGAVTPHWIATMPVVGDWL 148

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           +E WT +  HP  +  L +  +    I  I R A   G       L+++FM+IALFF YR
Sbjct: 149 NEQWTTNFGHPGGIGELIQ-LISGANIGSIYRGALAAGGSAFGLLLTLLFMMIALFFAYR 207

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG   + Q+D LGE + P  W++ISR+VP  I ST  GMT+IAIGEGLVLG AYWLAGVP
Sbjct: 208 DGEHFAGQVDRLGERILPTRWERISRVVPATISSTVTGMTVIAIGEGLVLGIAYWLAGVP 267

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           S V LG +T +MA+IPGGAP+SFT VSIYL   G+      LFLWGA+ELFIVDKTLRP 
Sbjct: 268 SPVTLGALTGVMALIPGGAPLSFTLVSIYLAASGSPMAGLALFLWGAVELFIVDKTLRPK 327

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           LVGGPIKLPFLPTFFGL+GGV+TMG LGLFIGPVLMAL+  IW+E +  ++
Sbjct: 328 LVGGPIKLPFLPTFFGLIGGVKTMGFLGLFIGPVLMALLVAIWREWLREVE 378


>gi|227820705|ref|YP_002824675.1| predicted transmembrane protein [Sinorhizobium fredii NGR234]
 gi|227339704|gb|ACP23922.1| predicted transmembrane protein [Sinorhizobium fredii NGR234]
          Length = 391

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 181/357 (50%), Positives = 235/357 (65%), Gaps = 2/357 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++ P    RWM++ I+L  +YF  GF  PVL+A++IGF SWPIY   +     + T 
Sbjct: 25  RSALVLPISAARWMLVLILLAGVYFFHGFVVPVLAAVVIGFASWPIYRRLLQALNGNRTL 84

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWAS 120
            A IA +SV+   +VP+     Y + E+++ +   V  N +G PVP WL+ IP  G W  
Sbjct: 85  AATIAIISVIAFIVVPISIAAAYAIDEVRDWLVWAVETNVNGAPVPAWLTTIPVAGAWLG 144

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           + W K++ HP +L  L +    +N  + I R     G       L+++FM+I LFF YRD
Sbjct: 145 QQWVKYVGHPGALGELVQLVSGSNIGN-IYRGVLVIGASAFQSFLTLLFMLITLFFVYRD 203

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G S S+QLD LGE +FP  W+++SR+VP  I ST  GM IIAIGEG+VLG AYWLAGVPS
Sbjct: 204 GHSFSKQLDRLGEQIFPMRWERLSRVVPLTISSTVTGMGIIAIGEGIVLGVAYWLAGVPS 263

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            V LG+IT +MA+IPGGAP+ FT VSIYL+  G+ F+   LF WG  ELFIVDKTLRP L
Sbjct: 264 PVTLGIITGLMALIPGGAPLCFTLVSIYLVASGSPFHGVALFAWGTTELFIVDKTLRPRL 323

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           VGGPIKLPFLPTFFGLVGGV+TMG LGLF+GPVLMAL+  IW+E +  +    E  +
Sbjct: 324 VGGPIKLPFLPTFFGLVGGVKTMGFLGLFVGPVLMALLVAIWREWMHEVANQPEPTA 380


>gi|325293121|ref|YP_004278985.1| permease [Agrobacterium sp. H13-3]
 gi|325060974|gb|ADY64665.1| permease [Agrobacterium sp. H13-3]
          Length = 412

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 169/350 (48%), Positives = 233/350 (66%), Gaps = 2/350 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++ P    RW+++ + L  +YF  GF  PVL+AL+IGF SWP+Y+  + +   ++T 
Sbjct: 23  RIALIPPISAARWLLVLVALAGIYFFHGFLVPVLAALVIGFASWPVYTRLLRQVGGNTTL 82

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWAS 120
            A IA + ++   +VP+     Y   E++E     V  N+ G PVP W++ +PG G W  
Sbjct: 83  GASIAIILILTFLVVPIFIAASYTASEIREWFGWAVHVNKVGAPVPDWIAALPGVGSWLG 142

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E W K++  P ++  + +     N  + I R     G       L+++FM+IALFF YR+
Sbjct: 143 EQWVKYIGTPGAIGEVIQLVSGANIGN-IYRAILAAGNGAFHLVLTLLFMLIALFFVYRN 201

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G   S Q+D +GE + P  W++ISR+VP  I ST  GMT+IAIGEG++LG AYW+AGVPS
Sbjct: 202 GAGFSHQVDLVGERILPTRWERISRVVPATISSTVTGMTLIAIGEGIILGIAYWIAGVPS 261

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            V LGV+T +MA+IPGGAP+SFT VSIYL+  G+      LF+WG++ELFIVDKT+RP L
Sbjct: 262 PVTLGVLTGVMALIPGGAPLSFTLVSIYLVASGSPAYGLGLFIWGSVELFIVDKTIRPKL 321

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           VGGPIKLPFLPTFFGLVGGV+TMG LGLFIGPVLMAL+  IW+E +  ++
Sbjct: 322 VGGPIKLPFLPTFFGLVGGVKTMGFLGLFIGPVLMALLVAIWREWVREVE 371


>gi|319784191|ref|YP_004143667.1| hypothetical protein Mesci_4507 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170079|gb|ADV13617.1| protein of unknown function UPF0118 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 401

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 172/359 (47%), Positives = 231/359 (64%), Gaps = 2/359 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R  ++ P    RW+++ I+   +YF  GF  PVL+AL+I F SWP+Y   +     + T
Sbjct: 22  LRAAVIPPLSAARWLLVLIVAAGVYFFHGFLFPVLAALVIAFASWPLYRRLLVAVGGNRT 81

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWA 119
             A  A + ++   ++P+     Y + E++E V+  +  N+HG   P W++ +P  G W 
Sbjct: 82  IAATFAILFILAFLVIPIALAGTYAINEVREWVAWAIETNRHGAVTPHWIATMPVVGEWL 141

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           +E WT +  HP  +  L +     N I  I R     G       L+++FM+IALFF YR
Sbjct: 142 NEQWTTNFGHPGGIGELIQLVSGAN-IGSIYRGVLAAGGSAFGLLLTLLFMMIALFFAYR 200

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG   + Q+D LGE + P  W++ISR+VP  I ST  GMT+IAIGEGLVLG AYWLAGVP
Sbjct: 201 DGEHFAGQVDRLGERILPTRWERISRVVPATISSTVTGMTVIAIGEGLVLGIAYWLAGVP 260

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           S V LG +T +MA+IPGGAP+SFT VSIYL   G+      LFLWGA+ELFIVDKTLRP 
Sbjct: 261 SPVTLGALTGVMALIPGGAPLSFTLVSIYLAASGSPMAGLALFLWGAVELFIVDKTLRPK 320

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           LVGGPIKLPFLPTFFGL+GGV+TMG LGLFIGPVLMAL+  IW+E +  ++  ++ +  
Sbjct: 321 LVGGPIKLPFLPTFFGLIGGVKTMGFLGLFIGPVLMALLVAIWREWLREVEMAEDVVPD 379


>gi|307306991|ref|ZP_07586730.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
 gi|307318057|ref|ZP_07597494.1| protein of unknown function UPF0118 [Sinorhizobium meliloti AK83]
 gi|306896459|gb|EFN27208.1| protein of unknown function UPF0118 [Sinorhizobium meliloti AK83]
 gi|306901931|gb|EFN32530.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
          Length = 391

 Score =  269 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 177/356 (49%), Positives = 232/356 (65%), Gaps = 2/356 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++ P    RW+++ I+L  +YF  GF  PVL+A++IGF SWPIY   +     + T 
Sbjct: 25  RSALVVPISAARWLLVLILLCGVYFFHGFLVPVLAAVVIGFASWPIYWRLLQGLNGNRTL 84

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWAS 120
            A IA +SV+   +VP+     Y + E+++ +   V  N +G P P WL+ IP  G W  
Sbjct: 85  AATIAIISVVAFIVVPISLAAIYAVEEVRDWLVWAVATNANGAPAPAWLATIPAVGAWLG 144

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E W K++ HP +L  L +    +N  + I R     G       L+++FM+I LFF YRD
Sbjct: 145 EQWVKYVGHPGALGELVQLVSGSNIGN-IYRGVLVVGASAFQSFLTLLFMLITLFFVYRD 203

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G S S+QLD LGE +FP  W+++SR+VP  I ST  GM IIAIGEG+VLG AYWLAGVPS
Sbjct: 204 GQSFSKQLDHLGERIFPMRWERLSRVVPLTISSTVTGMGIIAIGEGIVLGVAYWLAGVPS 263

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            V LG++T IMA+IPGGAP+ FT VS+YL+  G+  +   LF WG  ELFIVDKTLRP L
Sbjct: 264 PVTLGILTGIMALIPGGAPLCFTLVSVYLVASGSPVHGIALFTWGTTELFIVDKTLRPRL 323

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           VGGPIKLPFLPTFFGL+GGV+TMG LGLF+GPVLMAL+  IW+E +  +    E  
Sbjct: 324 VGGPIKLPFLPTFFGLIGGVKTMGFLGLFVGPVLMALLVAIWREWLREVTSQPEPP 379


>gi|150395339|ref|YP_001325806.1| hypothetical protein Smed_0111 [Sinorhizobium medicae WSM419]
 gi|150026854|gb|ABR58971.1| protein of unknown function UPF0118 [Sinorhizobium medicae WSM419]
          Length = 391

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 175/359 (48%), Positives = 230/359 (64%), Gaps = 2/359 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++ P    RW+++ ++L  +YF  GF  PVL+A++IGF SWPIY   +     + T 
Sbjct: 25  RSALVVPISAARWLLVLVLLAGVYFFHGFLVPVLAAVVIGFASWPIYWRMLQALNGNRTL 84

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWAS 120
            A IA + V+   +VP+     Y + E++  +   V  N +G P P WL+ IP  G W  
Sbjct: 85  AATIALICVVAFIVVPISLAAIYAVDEVRSGLVWAVETNANGAPAPAWLATIPAVGAWLG 144

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E W K++ HP +L  L +    +N  + I R     G       L+++FM+I LFF YRD
Sbjct: 145 EQWVKNVGHPGALGELVQLVSGSNIGN-IYRGVLVVGASAFQSFLTLLFMLITLFFVYRD 203

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G S S+QLD LGE +FP  W+++SR+VP  I ST  GM IIAIGEG+VLG AYWLAGVPS
Sbjct: 204 GHSFSKQLDHLGERIFPMRWERLSRVVPLTISSTVTGMGIIAIGEGIVLGVAYWLAGVPS 263

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            V LG+IT +MA++PGGAP+ FT VS+YL+  G+  +   LF WG  ELFIVDKTLRP L
Sbjct: 264 PVTLGIITGLMALVPGGAPLCFTLVSVYLVASGSPIHGIALFTWGTTELFIVDKTLRPRL 323

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           VGGPIKLPFLPTFFGLVGGV+TMG LGLF+GPVLMAL+  IW+E +  +    E     
Sbjct: 324 VGGPIKLPFLPTFFGLVGGVKTMGFLGLFVGPVLMALLVAIWREWLREVTSQPEPADDK 382


>gi|221641060|ref|YP_002527322.1| hypothetical protein RSKD131_2961 [Rhodobacter sphaeroides KD131]
 gi|221161841|gb|ACM02821.1| Hypothetical Protein RSKD131_2961 [Rhodobacter sphaeroides KD131]
          Length = 424

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 152/351 (43%), Positives = 212/351 (60%), Gaps = 2/351 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R  ++      RW+++ I+  S+YF  GF  PVL+ALII F SWP+          S  
Sbjct: 35  VRRPLITDISAARWLLLLILAASVYFFHGFLVPVLAALIIAFASWPLMLKLERSLPISRG 94

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWA 119
               +  + ++   ++P++    Y   E++  +   +  N  G P P WL  +P  G W 
Sbjct: 95  IAGALLVMMIVGFLVIPVMMALLYAFRELQAWIGWAINTNSTGAPPPVWLEALPHVGPWV 154

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            E W  ++  P ++  + +     N I  I R     G +     L+++FM+IALF FYR
Sbjct: 155 GEKWRTYIGEPGAISEMVQLVSGAN-IGTISRGILTAGTLAFHLALTLLFMLIALFIFYR 213

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  I+ Q+D +G  + P  W +ISR+VP  I ST  GMT+IA+GEG+VLG+AYW+AG+P
Sbjct: 214 DGERIAAQVDRVGTRILPDRWDRISRVVPATISSTVTGMTLIAMGEGVVLGTAYWIAGMP 273

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           S V LGVIT  MA+IPGGAP      S YL   G+ +    LFLWG +ELF+VDKT+RP 
Sbjct: 274 SPVTLGVITGFMALIPGGAPFCVIVASSYLAASGSPWAGLGLFLWGTVELFVVDKTIRPV 333

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           LVGGP+KLPFLPTFFGLVGG+ TMG++GLF+GPVLMAL+  +W+E    I 
Sbjct: 334 LVGGPVKLPFLPTFFGLVGGIETMGIVGLFVGPVLMALLVAMWREWQREID 384


>gi|86357805|ref|YP_469697.1| putative permease protein [Rhizobium etli CFN 42]
 gi|86281907|gb|ABC90970.1| putative permease protein [Rhizobium etli CFN 42]
          Length = 398

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 173/353 (49%), Positives = 235/353 (66%), Gaps = 2/353 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++      RW+++ ++   +YF  GF  PVL+AL+IGF SWP+Y   +S+   ++T 
Sbjct: 21  RTPLIPSISAARWLLVLVVAAGVYFFYGFLVPVLAALVIGFASWPLYRKLLSRVGGNTTI 80

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWAS 120
            A IA V ++   ++P+     Y   E++  V+  + AN+ G   P W+  +P  G +  
Sbjct: 81  AATIAIVMIVTFLVIPIGLAVTYTTGEVRNWVTWAIHANRTGAATPDWIVALPWAGAYLD 140

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           ++WTK++  P +L  L +     N  + I R     G       L+++FM+IALFF YRD
Sbjct: 141 DVWTKYIGSPGALGELIQAVSGANIGN-IYRALLAAGGGAFHLLLTLLFMLIALFFVYRD 199

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           GFS S+Q+D LGE + P  W++ISR+VP  I ST +GMT+IAIGEG+VLG AYW+AGVPS
Sbjct: 200 GFSFSKQIDMLGERILPNRWERISRVVPATISSTVMGMTLIAIGEGIVLGVAYWIAGVPS 259

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            V LGV+T +MA+IPGGAP+SFT VS+YLL  G+      LF+WG +ELFIVDKTLRP L
Sbjct: 260 PVTLGVLTGVMALIPGGAPLSFTLVSVYLLASGSHAAGIALFVWGTVELFIVDKTLRPKL 319

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           VGGPIKLPFLPTFFGL+GGV+TMG LGLFIGPVLMALI  IW+E I   +  +
Sbjct: 320 VGGPIKLPFLPTFFGLIGGVKTMGFLGLFIGPVLMALIVAIWREWIHEARNAE 372


>gi|146279074|ref|YP_001169233.1| hypothetical protein Rsph17025_3044 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557315|gb|ABP71928.1| protein of unknown function UPF0118 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 398

 Score =  265 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 152/350 (43%), Positives = 212/350 (60%), Gaps = 2/350 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R+ ++      RW+++ I+  S+YF  GF  PVL+A+II F SWP+              
Sbjct: 20  RKPLITDISAARWLLLLILAASVYFFHGFLVPVLAAVIIAFASWPLLQRLERSLPIGRAG 79

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWAS 120
              +  + ++   ++P++    Y   E++  +   +  N  G P P WL  +P  G W  
Sbjct: 80  AGALLLMMIVGFLVIPVMMALLYAFRELQSWIGWAINTNSLGAPPPVWLETLPHVGPWIG 139

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E W  ++  P ++  + +     N I  I R     G +     L+++FM+IALF FYRD
Sbjct: 140 EKWRAYIGEPGAISEMVQLVSGAN-IGTISRGILTAGTLAFHLALTLLFMLIALFIFYRD 198

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  I+ Q+D +G  + P  W +ISR+VP  I ST  GMT+IA+GEG+VLG+AYW+AG+PS
Sbjct: 199 GERIAAQVDRVGSRILPDRWDRISRVVPATISSTVTGMTLIAMGEGVVLGTAYWIAGMPS 258

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            V LGVIT  MA++PGGAP    A S YL   G+ +    LFLWG IELFIVDKT+RP L
Sbjct: 259 PVTLGVITGFMALVPGGAPFCVVAASSYLAASGSPWAGLGLFLWGTIELFIVDKTIRPVL 318

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           VGGP+KLPFLPTFFGLVGG+ TMG++GLF+GPVLMAL+  +W+E    I 
Sbjct: 319 VGGPVKLPFLPTFFGLVGGIETMGIVGLFVGPVLMALLVSMWREWQREID 368


>gi|119386380|ref|YP_917435.1| hypothetical protein Pden_3672 [Paracoccus denitrificans PD1222]
 gi|119376975|gb|ABL71739.1| protein of unknown function UPF0118 [Paracoccus denitrificans
           PD1222]
          Length = 396

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 157/360 (43%), Positives = 222/360 (61%), Gaps = 2/360 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  +L      RW+++ I+  S+YF  GF  PVL+A++I   SWP+      +     T+
Sbjct: 34  RPPLLTNISAARWLLLAIVAASIYFFHGFLVPVLAAMVIALASWPLRERAAHQLNLGRTW 93

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWAS 120
            A    + ++C  ++P+     Y   E+++ ++  +L N  G   P W+ D+P  G W  
Sbjct: 94  AAAALVLVLVCFLLIPIAMALIYAFRELRDWINWAILVNSSGAATPGWMVDLPQIGDWLD 153

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E W  ++  P  +  + +    +N I  I R A   G +     L+++FM+I LF  YRD
Sbjct: 154 ENWQTYIGRPGGISEIVQLVSGSN-IGAIYRGAVTAGTLAFHLALTLLFMLITLFVLYRD 212

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  I  Q+D +G  + P  W ++SR+VP  I ST  GMT+IAIGEG++LG AYWLAGVPS
Sbjct: 213 GDKIVAQIDQVGRRILPDRWSRLSRVVPATISSTVTGMTLIAIGEGVILGIAYWLAGVPS 272

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            V  GVIT  MA+IPGGAP+SFT VSIYL+  G+      LF+WG  ELF+VDKT+RP L
Sbjct: 273 PVTFGVITGFMALIPGGAPLSFTLVSIYLVASGSPVAGAALFVWGTCELFVVDKTIRPVL 332

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           VGGP+KLPFLPTFFGL+GGV+TMG++GLF+GPVLMAL+  IW+E    + E +++  S  
Sbjct: 333 VGGPVKLPFLPTFFGLIGGVKTMGIVGLFVGPVLMALLVSIWREWQRELSEEEQRQDSKL 392


>gi|218672333|ref|ZP_03522002.1| putative permease protein [Rhizobium etli GR56]
          Length = 413

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 175/351 (49%), Positives = 236/351 (67%), Gaps = 2/351 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++      RW+++ I+   +YF  GF  PVL+AL+IGF SWP+Y   +++   ++T 
Sbjct: 21  RTPLIPSISAARWLLVLIVAAGVYFFYGFLVPVLAALVIGFASWPLYRKLLARVGGNTTI 80

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWAS 120
            A IA + ++   ++P+ F   Y   E++  ++  + AN+ G   P W++ +P  G +  
Sbjct: 81  AATIAIIMIVTFLVIPIGFAATYTTGEVRTWLAWAIHANRSGASTPGWIAALPFAGPYLD 140

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           ELWTK++  P +L  L +     +  + I R     G       L+++FM+IALFF YRD
Sbjct: 141 ELWTKYIGSPGALGELIQAVSGAHIGN-IYRAVLAAGGGAFHLLLTLLFMLIALFFVYRD 199

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           GFS S+Q+D LGE + P  W++ISR+VP  I ST +GMT+IAIGEG+VLG AYW+AGVPS
Sbjct: 200 GFSFSKQIDMLGERILPNRWERISRVVPATISSTVMGMTLIAIGEGIVLGLAYWIAGVPS 259

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            V LGV+T +MA+IPGGAP+SFT VSIYLL  G+      LF+WG +ELFIVDKTLRP L
Sbjct: 260 PVTLGVLTGVMALIPGGAPLSFTLVSIYLLASGSHVAGVGLFVWGTVELFIVDKTLRPKL 319

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           VGGPIKLPFLPTFFGLVGGV+TMG LGLFIGPVLMALI  IW+E I   + 
Sbjct: 320 VGGPIKLPFLPTFFGLVGGVKTMGFLGLFIGPVLMALIVAIWREWIHEARN 370


>gi|77462103|ref|YP_351607.1| putative transmembrane transport protein [Rhodobacter sphaeroides
           2.4.1]
 gi|126460992|ref|YP_001042106.1| hypothetical protein Rsph17029_0215 [Rhodobacter sphaeroides ATCC
           17029]
 gi|77386521|gb|ABA77706.1| Putative transmembrane transport protein [Rhodobacter sphaeroides
           2.4.1]
 gi|126102656|gb|ABN75334.1| protein of unknown function UPF0118 [Rhodobacter sphaeroides ATCC
           17029]
          Length = 406

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 152/351 (43%), Positives = 212/351 (60%), Gaps = 2/351 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R  ++      RW+++ I+  S+YF  GF  PVL+ALII F SWP+          S  
Sbjct: 27  VRRPLITDISAARWLLLLILAASVYFFHGFLVPVLAALIIAFASWPLMLKLERSLPISRG 86

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWA 119
               +  + ++   ++P++    Y   E++  +   +  N  G P P WL  +P  G W 
Sbjct: 87  IAGALLVMMIVGFLVIPVMMALLYAFRELQAWIGWAINTNSTGAPPPVWLEALPHVGPWV 146

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            E W  ++  P ++  + +     N I  I R     G +     L+++FM+IALF FYR
Sbjct: 147 GEKWRTYIGEPGAISEMVQLVSGAN-IGTISRGILTAGTLAFHLALTLLFMLIALFIFYR 205

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  I+ Q+D +G  + P  W +ISR+VP  I ST  GMT+IA+GEG+VLG+AYW+AG+P
Sbjct: 206 DGERIAAQVDRVGTRILPDRWDRISRVVPATISSTVTGMTLIAMGEGVVLGTAYWIAGMP 265

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           S V LGVIT  MA+IPGGAP      S YL   G+ +    LFLWG +ELF+VDKT+RP 
Sbjct: 266 SPVTLGVITGFMALIPGGAPFCVIVASSYLAASGSPWAGLGLFLWGTVELFVVDKTIRPV 325

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           LVGGP+KLPFLPTFFGLVGG+ TMG++GLF+GPVLMAL+  +W+E    I 
Sbjct: 326 LVGGPVKLPFLPTFFGLVGGIETMGIVGLFVGPVLMALLVAMWREWQREID 376


>gi|163858826|ref|YP_001633124.1| hypothetical protein Bpet4506 [Bordetella petrii DSM 12804]
 gi|163262554|emb|CAP44857.1| conserved hypothetical protein [Bordetella petrii]
          Length = 389

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 163/360 (45%), Positives = 228/360 (63%), Gaps = 2/360 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M + +L    I RW+++ ++L   YFL GF  P L+ALIIG  +WP++   + K    +T
Sbjct: 21  MHQPVLPAYLIARWLLLLVLLAGAYFLSGFLVPALAALIIGLATWPLFQRIVQKCGGRAT 80

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWA 119
             A +A + V+ + IVPL     Y + E     +  + AN+HG+ VP W+S +P  G   
Sbjct: 81  LAATLALIGVILVIIVPLALALSYAVQEASNFFAWALAANRHGMAVPDWISSLPAVGPRL 140

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           +  W  +L  P +L  L E     +  + I R             L+++FM+I LFF Y+
Sbjct: 141 AVYWQTYLGEPHALGALVELVSGEHLGN-IYRMVLSATGNAFQLLLNVVFMLITLFFVYK 199

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  +  QLD LGE + P  W++ SR+VP  + ST  GM++IA+GEG+VLG AYWLAGVP
Sbjct: 200 DGDRMIAQLDVLGERILPTRWQRFSRVVPATVGSTVTGMSLIAVGEGVVLGVAYWLAGVP 259

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           S V LGV+T  MA+IPGGAP+SFT VS+YL+  G++     L  WG IELFIVDKTLRP 
Sbjct: 260 SPVLLGVVTGFMALIPGGAPLSFTLVSLYLIGSGHLVAGLALLAWGTIELFIVDKTLRPR 319

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           LVGGP+KLPFLPTFFGL+GGV+TMG++GLF+GPVLMAL+  +W+E +  ++  ++    N
Sbjct: 320 LVGGPVKLPFLPTFFGLIGGVKTMGIVGLFVGPVLMALLVAVWREWVRNVERERDTARLN 379


>gi|159184894|ref|NP_354723.2| permease [Agrobacterium tumefaciens str. C58]
 gi|159140174|gb|AAK87508.2| permease [Agrobacterium tumefaciens str. C58]
          Length = 412

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 168/350 (48%), Positives = 236/350 (67%), Gaps = 2/350 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++ P    RW+++ ++L  +YF  GF  PVL+AL+IGF SWP+Y+  + +   ++T 
Sbjct: 23  RIALIPPISAARWLLLLVVLAGIYFFNGFLVPVLAALVIGFASWPVYTRLLRQVGGNTTL 82

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWAS 120
            A IA + ++   +VP+     Y   E++E     V  N+ G PVP W++ +PG G W  
Sbjct: 83  GATIAIILIIAFLVVPIFIAASYTATEIREWFGWAVHVNKAGAPVPDWIAALPGIGPWLG 142

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E W K++  P ++  + +     N  + I R     G       L+++FM+IALFF YR+
Sbjct: 143 EQWVKYIGTPGAIGEVIQLVSGANIGN-IYRAILAAGNGAFHLVLTLLFMLIALFFVYRN 201

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G   ++Q+D +GE + P  W++ISR+VP  I ST  GMT+IAIGEG++LG AYW+AGVPS
Sbjct: 202 GAGFTRQIDLVGERILPTRWERISRVVPATISSTVTGMTLIAIGEGIILGIAYWIAGVPS 261

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            V LGV+T +MA+IPGGAP+SFT VSIYL+  G+  +   LF+WG++ELFIVDKT+RP L
Sbjct: 262 PVTLGVLTGVMALIPGGAPLSFTLVSIYLVASGSPAHGLALFVWGSVELFIVDKTIRPKL 321

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           VGGPIKLPFLPTFFGLVGGV+TMG LGLFIGPVLMAL+  IW+E +  ++
Sbjct: 322 VGGPIKLPFLPTFFGLVGGVKTMGFLGLFIGPVLMALLVAIWREWVREVE 371


>gi|241204758|ref|YP_002975854.1| hypothetical protein Rleg_2037 [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858648|gb|ACS56315.1| protein of unknown function UPF0118 [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 405

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 173/351 (49%), Positives = 236/351 (67%), Gaps = 2/351 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++      RW+++ ++   +YF  GF  PVL+AL+IGF SWP+Y   +++   ++T 
Sbjct: 23  RTPLIPSISAARWLLVLVVAAGVYFFYGFLVPVLAALVIGFASWPLYRKLLARVGGNTTI 82

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWAS 120
            A IA + ++   ++P+     Y   E++  V+  + AN+ G P P W+  +P  G + +
Sbjct: 83  AATIAIIMIITFLVIPIGLAVTYTTGEVRTWVTWAIHANRVGAPTPDWIVALPWAGAYLN 142

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E+WT+++  P +L  + +     N  + I R     G       L+++FM+IALFF YRD
Sbjct: 143 EVWTRYIGSPGALGEVIQAVSGANIGN-IYRAVLAAGGGAFHLLLTLLFMLIALFFVYRD 201

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           GFS S+Q+D LGE + P  W++ISR+VP  I ST +GMT+IAIGEG+VLG AYW+AGVPS
Sbjct: 202 GFSFSKQIDMLGERILPNRWERISRVVPATISSTVMGMTLIAIGEGIVLGLAYWIAGVPS 261

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            V LGV+T +MA+IPGGAP+SFT VSIYLL  G+      LF+WG +ELFIVDKTLRP L
Sbjct: 262 PVTLGVLTGVMALIPGGAPLSFTLVSIYLLASGSHVAGIGLFVWGTVELFIVDKTLRPKL 321

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           VGGPIKLPFLPTFFGLVGGV+TMG LGLFIGPVLMALI  IW+E I   + 
Sbjct: 322 VGGPIKLPFLPTFFGLVGGVKTMGFLGLFIGPVLMALIVAIWREWIHEARN 372


>gi|116252266|ref|YP_768104.1| transmembrane protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256914|emb|CAK08008.1| putative transmembrane protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 405

 Score =  258 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 174/351 (49%), Positives = 235/351 (66%), Gaps = 2/351 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++      RW+++ ++   +YF  GF  PVL+AL+IGF SWP+Y   +++   ++T 
Sbjct: 23  RTPLIPSISAARWLLVLVVAAGVYFFYGFLVPVLAALVIGFASWPLYRKLLARVGGNTTI 82

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWAS 120
            A IA + ++   ++P+     Y   E++  V+  + AN+ G P P W+  +P  G +  
Sbjct: 83  AATIAIILIITFLVIPIGLAVTYTTGEVRTWVAWAIHANRAGAPTPDWIVALPWAGAYLD 142

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E+WTK++  P +L  + +     N  + I R     G       L+++FM+IALFF YRD
Sbjct: 143 EVWTKYIGSPGALGEVIQAVSGANIGN-IYRAVLAAGGGAFHLLLTLLFMLIALFFVYRD 201

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           GFS S+Q+D LGE + P  W++ISR+VP  I ST +GMT+IAIGEG+VLG AYW+AGVPS
Sbjct: 202 GFSFSKQIDMLGERILPNRWERISRVVPATISSTVMGMTLIAIGEGIVLGLAYWIAGVPS 261

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            V LGV+T +MA+IPGGAP+SFT VSIYLL  G+      LF+WG +ELFIVDKTLRP L
Sbjct: 262 PVTLGVLTGVMALIPGGAPLSFTLVSIYLLASGSHVAGISLFVWGTVELFIVDKTLRPKL 321

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           VGGPIKLPFLPTFFGLVGGV+TMG LGLFIGPVLMALI  IW+E I   + 
Sbjct: 322 VGGPIKLPFLPTFFGLVGGVKTMGFLGLFIGPVLMALIVAIWREWIHEARN 372


>gi|190891868|ref|YP_001978410.1| putative permease protein [Rhizobium etli CIAT 652]
 gi|190697147|gb|ACE91232.1| putative permease protein [Rhizobium etli CIAT 652]
          Length = 398

 Score =  258 bits (660), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 176/353 (49%), Positives = 237/353 (67%), Gaps = 2/353 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++      RW+++ I+   +YF  GF  PVL+AL+IGF SWP+Y   +++   ++T 
Sbjct: 21  RTPLIPSISAARWLLVLIVAAGVYFFYGFLVPVLAALVIGFASWPLYRKLLARVGGNTTI 80

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWAS 120
            A IA + ++   ++P+ F   Y   E++  ++  + AN+ G   P W++ +P  G +  
Sbjct: 81  AATIAIIMIVTFLVIPIGFAATYTTGEVRTWLAWAIHANRSGASTPGWIAALPFAGPYLD 140

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           ELWTK++  P +L  L +     +  + I R     G       L+++FM+IALFF YRD
Sbjct: 141 ELWTKYIGSPGALGELIQAVSGAHIGN-IYRAVLAAGGGAFHLLLTLLFMLIALFFVYRD 199

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           GFS S+QLD LGE + P  W++ISR+VP  I ST +GMT+IAIGEG+VLG AYW+AGVPS
Sbjct: 200 GFSFSKQLDMLGERILPNRWERISRVVPATISSTVMGMTLIAIGEGIVLGLAYWIAGVPS 259

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            V LGV+T +MA+IPGGAP+SFT VSIYLL  G+      LF+WG +ELFIVDKTLRP L
Sbjct: 260 PVTLGVLTGVMALIPGGAPLSFTLVSIYLLASGSHVAGVGLFVWGTVELFIVDKTLRPKL 319

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           VGGPIKLPFLPTFFGLVGGV+TMG LGLFIGPVLMALI  IW+E I   +  +
Sbjct: 320 VGGPIKLPFLPTFFGLVGGVKTMGFLGLFIGPVLMALIVAIWREWIHEARNAE 372


>gi|187476842|ref|YP_784866.1| membrane protein [Bordetella avium 197N]
 gi|115421428|emb|CAJ47933.1| putative membrane protein [Bordetella avium 197N]
          Length = 369

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 166/355 (46%), Positives = 230/355 (64%), Gaps = 2/355 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M++ +     I RW+++ ++   LYFL GF  P L+ALIIG  +WP+Y   +   +  + 
Sbjct: 1   MQQPVFPVYLIARWLLLLVVAAGLYFLSGFLVPALAALIIGLATWPLYERVVRFCKGRNI 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWA 119
             A +A   V+ + +VPL     Y   E     +  + AN+HG+ VP W+S +PG G   
Sbjct: 61  LAATLALCIVVLVVVVPLSMALTYAFKEASNFFAWALAANKHGVEVPFWISSLPGVGERL 120

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           S+ WT +L  P +L  + E     +  + I R A         + L+++FM+I LFF Y+
Sbjct: 121 SQYWTTYLGEPHALGAMVELVSGEHLGN-IYRMALSATGNVFQWLLTLLFMLITLFFVYK 179

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG S+  QLD LGE + PA WK+ SR+VP  + ST  GM +IA+GEG+VLG AYW+AGVP
Sbjct: 180 DGKSMVAQLDILGERVLPARWKRFSRVVPATVSSTVTGMCLIALGEGVVLGLAYWIAGVP 239

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           S V LGVIT  MA+IPGGAP+SFT VS+YL+   ++     LF+WG +ELFIVDKTLRP 
Sbjct: 240 SPVLLGVITGFMALIPGGAPLSFTLVSLYLVGSNHLVAGVGLFVWGTVELFIVDKTLRPR 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           LVGGP+KLPFLPTFFGLVGGV+TMG++GLF+GPVLMAL+  IW+E +   + + +
Sbjct: 300 LVGGPVKLPFLPTFFGLVGGVKTMGIVGLFVGPVLMALLVAIWREWVRNTERDCD 354


>gi|119896356|ref|YP_931569.1| permease [Azoarcus sp. BH72]
 gi|119668769|emb|CAL92682.1| probable permease [Azoarcus sp. BH72]
          Length = 367

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 167/343 (48%), Positives = 227/343 (66%), Gaps = 2/343 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           + RW++  ++L  +YFL GF  PVL+ALIIGF SWP+Y   + +    S   A +A ++V
Sbjct: 10  VARWLLFLLLLAGVYFLSGFIVPVLAALIIGFASWPLYERLLRRCGGRSAVAASLALMTV 69

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSH 129
           + + +VPL     Y M E   L+  ++ AN++G+  PRW+  +P  G   + LW ++L  
Sbjct: 70  ILVLVVPLSLAGSYAMREADTLIEWLLAANRNGMAPPRWVEALPLVGGRLAALWQEYLGA 129

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
           PQ+L    +  L    +  I R         L   L+++FM+I LFF Y+DG  I+ QLD
Sbjct: 130 PQALGEWVQ-ILSGQHLGNIYRILLAATGDLLHAVLTLLFMLITLFFIYKDGDRIAAQLD 188

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +GE + PA W++ SR+VP  + +T  GM +IAIGEG+VLG AYW+AGVPS V LGV TA
Sbjct: 189 RVGEQVLPARWQRFSRVVPATVSATVTGMGLIAIGEGVVLGLAYWIAGVPSPVLLGVATA 248

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            MA+IPGGAP++FT VS+YL+  G+      LF WG  ELFIVDKTLRP LVGGP+KLPF
Sbjct: 249 FMALIPGGAPLAFTLVSLYLVGSGDPMAGLALFTWGTCELFIVDKTLRPRLVGGPVKLPF 308

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           LPTFFGLVGGV+TMGL+GLF+GPVLMAL+  IW+E +   +E 
Sbjct: 309 LPTFFGLVGGVKTMGLVGLFVGPVLMALLVAIWREWLHHTEEE 351


>gi|222086043|ref|YP_002544575.1| permease protein [Agrobacterium radiobacter K84]
 gi|221723491|gb|ACM26647.1| permease protein [Agrobacterium radiobacter K84]
          Length = 392

 Score =  255 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 165/359 (45%), Positives = 233/359 (64%), Gaps = 2/359 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++      RW+++ I    +YF  GF  PVL+A +IGF +WP+YS  + +   ++T 
Sbjct: 22  RMALIPSISAARWLLILIAAAGIYFFYGFLIPVLAAAVIGFATWPLYSDLLRRTGGNTTL 81

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWAS 120
            A IA   ++   ++P++    Y   E++E     V  N+ G P P+W+  +P  G W  
Sbjct: 82  AAAIAIAFIVTFLVLPIVLSAIYMAGEVREWFGWAVHVNRDGAPPPQWILALPMVGAWLG 141

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           + WT+++  P S+  L++  +    I  I R     G       L+++FM+IALFF YRD
Sbjct: 142 DQWTQYIGSPGSIGELAQ-LISGAHIGNIYRAVLAAGGGAFHVILTLLFMLIALFFIYRD 200

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G    +Q+D LGE + P  W++ISR+VP  I ST +GMT+IAIGEG+VLG AYW+AG PS
Sbjct: 201 GSMFVRQVDLLGERILPNRWERISRVVPATISSTVMGMTLIAIGEGIVLGVAYWIAGAPS 260

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + LGV+T +MA++PGGAP+S + VSIYL+  G+++    LF+WG +ELFIVDKTLRP L
Sbjct: 261 AITLGVLTGVMALVPGGAPLSMSLVSIYLIASGSLWAGIALFVWGTVELFIVDKTLRPKL 320

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           VGGPIKLPFLPTFFGLVGGV+TMG LGLFIGPVLMA+I  IW+E I   +  +E+ +  
Sbjct: 321 VGGPIKLPFLPTFFGLVGGVKTMGFLGLFIGPVLMAIIVAIWREWIREAELTEEQHAQE 379


>gi|310815151|ref|YP_003963115.1| hypothetical protein EIO_0655 [Ketogulonicigenium vulgare Y25]
 gi|308753886|gb|ADO41815.1| putative membrane protein [Ketogulonicigenium vulgare Y25]
          Length = 390

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 142/358 (39%), Positives = 223/358 (62%), Gaps = 4/358 (1%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R+ ++  Q  +RW+++ ++  S+YF  GF  PVL+A++I F SWPI    +      +T+
Sbjct: 32  RKPVITDQAAVRWLLLVLLAASVYFFYGFIVPVLAAMVIAFASWPIRQRLVPHMG--TTW 89

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWAS 120
            A++  ++++   ++P+L    Y + E++     ++  N  G P P W+ ++P  G    
Sbjct: 90  AAIVMVLALVVCIVLPILMGVLYAIHEVRGWSMWLMEVNTTGAPTPEWMQELPFFGAQID 149

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E W + L  P  +  L +    +N ++ I R     G       L+++F+++ALF FY D
Sbjct: 150 ERWAEFLGRPGGVSALIQLVTGSNIMN-IYRGVLSAGYYSFHLFLNLVFVLVALFVFYHD 208

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  I  Q+  +G  L P  W ++S + P  + ST  GMT+IAIGEG++LG AYW+AGVP+
Sbjct: 209 GDKIVAQIGRVGRRLLPERWDRLSSVAPMTVSSTVTGMTLIAIGEGIILGLAYWVAGVPA 268

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
               G+IT  +A+IPGGAP++FT +S+YL+  G+      LF+WG +ELFIVDKT+RP+L
Sbjct: 269 PATFGLITGFLALIPGGAPLAFTTISLYLVASGSPIAGVGLFVWGTVELFIVDKTIRPWL 328

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           VGGP++LPFL TFFGL+GG++TMG++GLF+GPVLMAL+  IW+E    I+   E+   
Sbjct: 329 VGGPVRLPFLLTFFGLIGGIKTMGIVGLFVGPVLMALLMTIWREWQREIRAPYERAED 386


>gi|209549432|ref|YP_002281349.1| hypothetical protein Rleg2_1838 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535188|gb|ACI55123.1| protein of unknown function UPF0118 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 398

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 174/354 (49%), Positives = 237/354 (66%), Gaps = 2/354 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++      RW+++ ++   +YF  GF  PVL+AL+IGF SWP+Y   +++   ++T 
Sbjct: 23  RTPLIPSISAARWLLVLVVAAGVYFFYGFLVPVLAALVIGFASWPLYRKLLARVGGNTTI 82

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWAS 120
            A IA + ++   ++P+     Y   E++  V+  + AN+ G P P W+  +P  G +  
Sbjct: 83  AATIAIIMIITFLVIPIGLAITYTTGEVRTWVAWAIHANRAGAPTPAWIVALPWAGAYLD 142

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E+WTK++  P +L  + +     N  + I R     G       L+++FM+IALFF YRD
Sbjct: 143 EVWTKYIGSPGALGEVIQAVSGANIGN-IYRAVLAAGGGAFHLLLTLLFMLIALFFVYRD 201

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           GFS S+Q+D LGE + P  W++ISR+VP  I ST +GMT+IAIGEG+VLG AYW+AGVPS
Sbjct: 202 GFSFSKQIDMLGERILPNRWERISRVVPATISSTVMGMTLIAIGEGIVLGLAYWIAGVPS 261

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            V LGV+T +MA+IPGGAP+SFT VSIYLL  G+      LF+WG +ELFIVDKTLRP L
Sbjct: 262 PVTLGVLTGVMALIPGGAPLSFTLVSIYLLASGSHVAGIGLFVWGTVELFIVDKTLRPKL 321

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           VGGPIKLPFLPTFFGLVGGV+TMG LGLFIGPVLMALI  IW+E I   +  ++
Sbjct: 322 VGGPIKLPFLPTFFGLVGGVKTMGFLGLFIGPVLMALIVAIWREWIHEARNAEK 375


>gi|33594470|ref|NP_882114.1| hypothetical protein BP3604 [Bordetella pertussis Tohama I]
 gi|33595146|ref|NP_882789.1| hypothetical protein BPP0437 [Bordetella parapertussis 12822]
 gi|33599428|ref|NP_886988.1| hypothetical protein BB0439 [Bordetella bronchiseptica RB50]
 gi|33564545|emb|CAE43862.1| putative membrane protein [Bordetella pertussis Tohama I]
 gi|33565223|emb|CAE36021.1| putative membrane protein [Bordetella parapertussis]
 gi|33567024|emb|CAE30937.1| putative membrane protein [Bordetella bronchiseptica RB50]
          Length = 367

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 163/356 (45%), Positives = 231/356 (64%), Gaps = 2/356 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M + +L    I RW+++ ++L  +YFL GF  P L+ALIIG  +WP++   +      +T
Sbjct: 1   MHQPVLPAFLIARWLLLLVLLAGIYFLSGFLVPALAALIIGLATWPLFQRLVRAFGGRTT 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWA 119
             A +A V+V+ + +VPL     Y + E     +  + AN+HG+ VP W+  +P  G   
Sbjct: 61  LAATLALVAVIVILVVPLSLALSYAIKEAGNFFAWALAANKHGVDVPAWIMSLPMVGERL 120

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           +E W  +L  P +L  L E     +  + I R             L+++FM+I LFF Y+
Sbjct: 121 AEYWRTYLGEPHALGALVEIVSGEHLGN-IYRMVLSATGNAFQLLLTVLFMLITLFFVYK 179

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  +  QLD LGE + PA W++ SR+VP  + ST  GM +IA+GEG+VLG AYW+AGVP
Sbjct: 180 DGTRMVGQLDILGERVLPARWQRFSRVVPATVSSTVTGMCLIALGEGVVLGLAYWVAGVP 239

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           S V LGVIT  MA++PGGAP+SFT VS+YL+  G++     LF+WG +ELFIVDKTLRP 
Sbjct: 240 SPVLLGVITGFMALVPGGAPLSFTLVSLYLVGSGHLVAGIGLFVWGTVELFIVDKTLRPR 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           LVGGP+KLPFLPTFFGLVGGV+TMG++GLF+GPVLMAL+  IW+E +  ++  +++
Sbjct: 300 LVGGPVKLPFLPTFFGLVGGVKTMGIVGLFVGPVLMALLVAIWREWVRNVERERDQ 355


>gi|293602078|ref|ZP_06684532.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292819533|gb|EFF78560.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 374

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 162/358 (45%), Positives = 229/358 (63%), Gaps = 2/358 (0%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           + +L    I RW+++ ++L  +YFL GF  P L+ALIIG  SWP+Y   + +    +   
Sbjct: 2   QPVLPAYLIARWLLLLVLLAGVYFLSGFLVPALAALIIGLASWPLYQRLVVRCGGRTAVA 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASE 121
           A +A + V+ + IVP+     Y + E     +  + AN+HG+ VP W++ +P  G    +
Sbjct: 62  ASLALLMVIVVLIVPMSLALSYAIKEASTFFAWAIAANRHGVAVPNWITSMPVVGERLGQ 121

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            W  ++  P +L  L E     +  + I R             L+++FM+I LFF Y+DG
Sbjct: 122 YWESYIGEPHALGALVEAVSGEHLGN-IYRMVLAATGNVFQLLLTVLFMLITLFFVYKDG 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +  QLD LGE + PA W++ SR+VP  I ST  GM +IA+GEGLVLG AYW+AGVPS 
Sbjct: 181 IRMVAQLDVLGERILPARWQRFSRVVPATINSTVTGMGLIALGEGLVLGVAYWVAGVPSP 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           V LGV+T  MA+IPGGAP+SFT VS+YL+  G++     L +WG++ELFIVDKTLRP LV
Sbjct: 241 VLLGVVTGFMALIPGGAPLSFTLVSLYLVGSGHVVAGIALMVWGSVELFIVDKTLRPRLV 300

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           GGP+KLPFLPTFFGLVGGV+TMGL+GLF+GPVLMAL+  +W+E +    + ++   S+
Sbjct: 301 GGPVKLPFLPTFFGLVGGVKTMGLVGLFVGPVLMALLVAVWREWVHHEVQERDAERSH 358


>gi|113968823|ref|YP_732616.1| hypothetical protein Shewmr4_0479 [Shewanella sp. MR-4]
 gi|113883507|gb|ABI37559.1| protein of unknown function UPF0118 [Shewanella sp. MR-4]
          Length = 372

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 166/350 (47%), Positives = 232/350 (66%), Gaps = 2/350 (0%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +++   + R +++ ++   ++F   F  P L+ALI+ F+SWP+Y   + K    S   A 
Sbjct: 4   IISNAAVGRTLLILLLCAGVFFFIDFLVPALAALIVCFSSWPLYQKLMVKCGGRSALSAT 63

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELW 123
           IA V ++   I PL+F+F Y + E++  V  +V ANQHG PVP W+ D+P  G W +  W
Sbjct: 64  IALVLIILGLITPLIFVFSYALQEIRAWVEWLVYANQHGAPVPLWIKDLPWIGEWLTLQW 123

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            + +  P  L  +       N    I R+  + G   L   L+++FM+I LFF Y+DG S
Sbjct: 124 QQFIGEPHELGKIVSAISGQNLSG-ISRWVLQLGWNTLGLLLTLLFMLITLFFLYKDGES 182

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +++QLD +GE + PA W + SR+VP  + ST +GMT+IAIGEG+VLG AYW+AGVPS VA
Sbjct: 183 VAKQLDIVGERILPARWHRFSRVVPATVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSAVA 242

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            GV+TA MA++PGGAP  FT +S+YL+  G++     LFLWG+IELFIVDKTLRP LVGG
Sbjct: 243 FGVLTAFMALVPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLVGG 302

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           PIKLPFLPTFFGL+GGV+TMG +GLF+GPVLMAL+  IW+E +      +
Sbjct: 303 PIKLPFLPTFFGLIGGVKTMGFVGLFVGPVLMALLIAIWREWLRDDPSTE 352


>gi|153002392|ref|YP_001368073.1| hypothetical protein Shew185_3886 [Shewanella baltica OS185]
 gi|151367010|gb|ABS10010.1| protein of unknown function UPF0118 [Shewanella baltica OS185]
          Length = 359

 Score =  249 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 165/350 (47%), Positives = 229/350 (65%), Gaps = 2/350 (0%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   I R +++ ++   ++F   F  P L+ALI+ F+SWP+Y   ++K    S   A
Sbjct: 3   PIFSNAAIGRSLLILLLCAGVFFFIDFLVPALAALIVCFSSWPLYQKLLAKCGGRSALAA 62

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASEL 122
            IA   ++   I+PL+F+F Y + E++  V  +V  NQHG PVP W+ D+P  G W +  
Sbjct: 63  TIALCCIVLGLIIPLVFVFSYALQEIRTWVDWLVFTNQHGSPVPLWIKDLPWMGEWLTLQ 122

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           W + +  P  L  +       N    I R+  + G   L   L+++FM+I LFF Y+DG 
Sbjct: 123 WQQFIGEPHELGKIISAISGQNLSG-ISRWVLQLGWNTLGLLLTLLFMLITLFFLYKDGE 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +++QLD +GE + PA W   SR+VP  + ST +GMT+IAIGEG+VLG AYW+AGVPS V
Sbjct: 182 QVAKQLDIVGERVLPARWHSFSRVVPATVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSAV 241

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           A GV+TA MA++PGGAP  FT +S+YL+  G++     LFLWG+IELFIVDKTLRP LVG
Sbjct: 242 AFGVLTAFMALVPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLVG 301

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           GPIKLPFLPTFFGL+GGV+TMG +GLF+GPVLMAL+  IW+E +    E 
Sbjct: 302 GPIKLPFLPTFFGLIGGVKTMGFVGLFVGPVLMALLVAIWREWLREEPET 351


>gi|307822136|ref|ZP_07652368.1| calcium-translocating P-type ATPase, PMCA-type [Methylobacter
           tundripaludum SV96]
 gi|307736702|gb|EFO07547.1| calcium-translocating P-type ATPase, PMCA-type [Methylobacter
           tundripaludum SV96]
          Length = 1256

 Score =  249 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 83/337 (24%), Positives = 156/337 (46%), Gaps = 5/337 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
               L+ F   +  ALII +  WP Y     + +  +T  A + T  +  +  + + +L 
Sbjct: 26  GFMVLREFLLTLAWALIIAYVVWPPYRYLRQQLKGDATLSAAVMTTIIAAVLFLTVYWLV 85

Query: 83  YYGMLEMKELVS-KVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
                E+K      V    Q+   +P ++S IP     ++ W + L+  ++  I      
Sbjct: 86  AMLQDELKTAYQTLVSDFGQNTYRLPDFISRIPWLGSTAQEWLERLTDDRAAVIAQFADW 145

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                    +F    G     Y + +  +++ +FF +RDG    +QL          Y  
Sbjct: 146 AQQWSGEFAKFLGGIGR----YIMKLGVILVTVFFCFRDGDEAVRQLHQGLVRFLGKYQD 201

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
                     R+   G+ + A+G+G++ G  Y +AGV + V LG +TA++A++P GA + 
Sbjct: 202 VYLEAAGHTTRAVVYGLVLAALGQGMLAGLGYAVAGVQAPVLLGAVTALLALVPMGATLV 261

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +  V I L++    +    L LWG + +  VD  +RP ++ G  ++PFL   FG++GG+ 
Sbjct: 262 WMPVGIVLVLTEQTWQGIGLLLWGFLVVSTVDNVIRPLVISGAGRIPFLVVLFGVLGGLS 321

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G +GLF+GPV++A++  +W+  +   +  ++   S
Sbjct: 322 AFGAIGLFLGPVILAVLLSVWQAWLKLQQHEEQTHES 358


>gi|117918932|ref|YP_868124.1| hypothetical protein Shewana3_0477 [Shewanella sp. ANA-3]
 gi|117611264|gb|ABK46718.1| protein of unknown function UPF0118 [Shewanella sp. ANA-3]
          Length = 368

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 166/349 (47%), Positives = 234/349 (67%), Gaps = 2/349 (0%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +++   + R +++ ++   ++F   F  P L+ALI+ F+SWP+Y   ++K    S   A 
Sbjct: 4   IISNAAVGRTLLILLLCAGVFFFIDFLVPALAALIVCFSSWPLYQKLMAKCGGRSALSAT 63

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELW 123
           IA V ++   I PL+F+F Y + E++  V  +V ANQHG PVP W+ D+P  G W +  W
Sbjct: 64  IALVLIIVGLITPLIFVFSYALQEIRAWVEWLVYANQHGAPVPLWIKDLPWIGEWLTLQW 123

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            + +  P  L  +       N    I R+  + G   L   L+++FM+I LFF Y+DG S
Sbjct: 124 QQFIGEPHELGKIVSAISGQNLSG-ISRWVLQLGWNTLGLLLTLLFMLITLFFLYKDGES 182

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +++QLD +GE + PA W + SR+VP  + ST +GMT+IAIGEG+VLG AYW+AGVPS VA
Sbjct: 183 VAKQLDIVGERILPARWHRFSRVVPATVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSAVA 242

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            GV+TA MA++PGGAP  FT +S+YL+  G++     LFLWG+IELFIVDKTLRP LVGG
Sbjct: 243 FGVLTAFMALVPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLVGG 302

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           PIKLPFLPTFFGL+GGV+TMG +GLF+GPVLMAL+  IW+E +    ++
Sbjct: 303 PIKLPFLPTFFGLIGGVKTMGFVGLFVGPVLMALLIAIWREWLRDEPDH 351


>gi|126172699|ref|YP_001048848.1| hypothetical protein Sbal_0447 [Shewanella baltica OS155]
 gi|125995904|gb|ABN59979.1| protein of unknown function UPF0118 [Shewanella baltica OS155]
          Length = 360

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 165/349 (47%), Positives = 229/349 (65%), Gaps = 2/349 (0%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   I R +++ ++   ++F   F  P L+ALI+ F+SWP+Y   ++K    S   A
Sbjct: 3   PIFSNAAIGRSLLILLLCAGVFFFIDFLVPALAALIVCFSSWPLYQKLLAKCGGRSALAA 62

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASEL 122
            IA   ++   I+PL+F+F Y + E++  V  +V  NQHG PVP W+ D+P  G W +  
Sbjct: 63  TIALCCIVLGLIIPLVFVFSYALQEIRTWVDWLVFTNQHGSPVPLWIKDLPWMGEWLTLQ 122

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           W + +  P  L  +       N    I R+  + G   L   L+++FM+I LFF Y+DG 
Sbjct: 123 WQQFIGEPHELGKIISAISGQNLSG-ISRWVLQLGWNTLGLLLTLLFMLITLFFLYKDGE 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +++QLD +GE + PA W   SR+VP  + ST +GMT+IAIGEG+VLG AYW+AGVPS V
Sbjct: 182 QVAKQLDIVGERVLPARWHSFSRVVPATVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSAV 241

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           A GV+TA MA++PGGAP  FT +S+YL+  G++     LFLWG+IELFIVDKTLRP LVG
Sbjct: 242 AFGVLTAFMALVPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLVG 301

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           GPIKLPFLPTFFGL+GGV+TMG +GLF+GPVLMAL+  IW+E +    E
Sbjct: 302 GPIKLPFLPTFFGLIGGVKTMGFVGLFVGPVLMALLVAIWREWLREEPE 350


>gi|114049038|ref|YP_739588.1| hypothetical protein Shewmr7_3551 [Shewanella sp. MR-7]
 gi|113890480|gb|ABI44531.1| protein of unknown function UPF0118 [Shewanella sp. MR-7]
          Length = 364

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 166/350 (47%), Positives = 233/350 (66%), Gaps = 2/350 (0%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +++   + R +++ ++   ++F   F  P L+ALI+ F+SWP+Y   ++K    S   A 
Sbjct: 4   IISNAAVGRTLLILLLCAGVFFFIDFLVPALAALIVCFSSWPLYQKLMAKCGGRSALSAT 63

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELW 123
           IA V ++   I PL+F+F Y + E++  V  +V ANQHG PVP W+ D+P  G W +  W
Sbjct: 64  IALVLIIVGLITPLIFVFSYALQEIRAWVEWLVYANQHGAPVPLWIKDLPWIGEWLTLQW 123

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            + +  P  L  +       N    I R+  + G   L   L+++FM+I LFF Y+DG S
Sbjct: 124 QQFIGEPHELGKIVSAISGQNLSG-ISRWVLQLGWNTLGLLLTLLFMLITLFFLYKDGES 182

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +++QLD +GE + PA W + SR+VP  + ST +GMT+IAIGEG+VLG AYW+AGVPS VA
Sbjct: 183 VAKQLDIVGERILPARWHRFSRVVPTTVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSAVA 242

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            GV+TA MA++PGGAP  FT +S+YL+  G++     LFLWG+IELFIVDKTLRP LVGG
Sbjct: 243 FGVLTAFMALVPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLVGG 302

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           PIKLPFLPTFFGL+GGV+TMG +GLF+GPVLMAL+  IW+E +      +
Sbjct: 303 PIKLPFLPTFFGLIGGVKTMGFVGLFVGPVLMALLIAIWREWLRDDPSAE 352


>gi|304410810|ref|ZP_07392427.1| protein of unknown function UPF0118 [Shewanella baltica OS183]
 gi|307305019|ref|ZP_07584769.1| protein of unknown function UPF0118 [Shewanella baltica BA175]
 gi|304350707|gb|EFM15108.1| protein of unknown function UPF0118 [Shewanella baltica OS183]
 gi|306912421|gb|EFN42845.1| protein of unknown function UPF0118 [Shewanella baltica BA175]
          Length = 360

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 165/349 (47%), Positives = 229/349 (65%), Gaps = 2/349 (0%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   I R +++ ++   ++F   F  P L+ALI+ F+SWP+Y   ++K    S   A
Sbjct: 3   PIFSNAAIGRSLLILLLCAGVFFFIDFLVPALAALIVCFSSWPLYQKLLAKCGGRSALAA 62

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASEL 122
            IA   ++   I+PL+F+F Y + E++  V  +V  NQHG PVP W+ D+P  G W +  
Sbjct: 63  TIALCCIVLGLIIPLVFVFSYALQEIRTWVDWLVFTNQHGSPVPLWIKDLPWIGEWLTLQ 122

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           W + +  P  L  +       N    I R+  + G   L   L+++FM+I LFF Y+DG 
Sbjct: 123 WQQFIGEPHELGKIISAISGQNLSG-ISRWVLQLGWNTLGLLLTLLFMLITLFFLYKDGE 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +++QLD +GE + PA W   SR+VP  + ST +GMT+IAIGEG+VLG AYW+AGVPS V
Sbjct: 182 QVAKQLDIVGERVLPARWHSFSRVVPATVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSAV 241

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           A GV+TA MA++PGGAP  FT +S+YL+  G++     LFLWG+IELFIVDKTLRP LVG
Sbjct: 242 AFGVLTAFMALVPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLVG 301

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           GPIKLPFLPTFFGL+GGV+TMG +GLF+GPVLMAL+  IW+E +    E
Sbjct: 302 GPIKLPFLPTFFGLIGGVKTMGFVGLFVGPVLMALLVAIWREWLREEPE 350


>gi|160877112|ref|YP_001556428.1| hypothetical protein Sbal195_4008 [Shewanella baltica OS195]
 gi|160862634|gb|ABX51168.1| protein of unknown function UPF0118 [Shewanella baltica OS195]
 gi|315269316|gb|ADT96169.1| protein of unknown function UPF0118 [Shewanella baltica OS678]
          Length = 360

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 165/349 (47%), Positives = 229/349 (65%), Gaps = 2/349 (0%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   I R +++ ++   ++F   F  P L+ALI+ F+SWP+Y   ++K    S   A
Sbjct: 3   PIFSNAAIGRSLLILLLCAGVFFFIDFLVPALAALIVCFSSWPLYQKLLAKCGGRSALAA 62

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASEL 122
            IA   ++   I+PL+F+F Y + E++  V  +V  NQHG PVP W+ D+P  G W +  
Sbjct: 63  TIALCCIVLGLIIPLVFVFSYALQEIRTWVDWLVFTNQHGSPVPLWIKDLPWMGEWLTLQ 122

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           W + +  P  L  +       N    I R+  + G   L   L+++FM+I LFF Y+DG 
Sbjct: 123 WQQFIGEPHELGKIISAISGQNLSG-ISRWVLQLGWNTLGLLLTLLFMLITLFFLYKDGQ 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +++QLD +GE + PA W   SR+VP  + ST +GMT+IAIGEG+VLG AYW+AGVPS V
Sbjct: 182 QVAKQLDIVGERVLPARWHSFSRVVPATVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSAV 241

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           A GV+TA MA++PGGAP  FT +S+YL+  G++     LFLWG+IELFIVDKTLRP LVG
Sbjct: 242 AFGVLTAFMALVPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLVG 301

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           GPIKLPFLPTFFGL+GGV+TMG +GLF+GPVLMAL+  IW+E +    E
Sbjct: 302 GPIKLPFLPTFFGLIGGVKTMGFVGLFVGPVLMALLVAIWREWLREEPE 350


>gi|222149993|ref|YP_002550950.1| permease [Agrobacterium vitis S4]
 gi|221736975|gb|ACM37938.1| permease [Agrobacterium vitis S4]
          Length = 349

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 172/350 (49%), Positives = 232/350 (66%), Gaps = 2/350 (0%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M+ P    RW+++ +++ S YF  GF  P+L+A++IGF SWPIY   +S    + T  A 
Sbjct: 1   MVAPTSAARWLLLAVLMASAYFFYGFIVPLLAAMVIGFASWPIYRRILSLARGNRTIGAT 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELW 123
           IA + V+   +VP+     Y + E+K      + AN+ G PVP+WL  +P  G W SE W
Sbjct: 61  IAIILVVSFIVVPISLAGIYAVDEVKSWGVWALRANEVGAPVPQWLIQVPLAGAWLSEHW 120

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +++ HP +L  L +  +    I  I R     G       L+++FM+IALFF YRDG  
Sbjct: 121 DQYVGHPGALGELVQ-LISGANIGTIYRGLLVVGSSAFHSFLTLLFMLIALFFVYRDGER 179

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           I  Q+D +GE + P  W+++SR+VP  I ST  GMTIIA+GEG+VLG AYW+AGVPS V 
Sbjct: 180 IVAQVDIVGERILPGRWERVSRLVPLTISSTVTGMTIIAVGEGIVLGLAYWIAGVPSPVT 239

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           LG+IT  MA+IPGGAP+SFT VSIYL+  G+      L  WG +ELFIVDKTLRP LVGG
Sbjct: 240 LGIITGFMALIPGGAPLSFTLVSIYLVASGSTIAGVGLLAWGTVELFIVDKTLRPRLVGG 299

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           PIKLPFLPTFFGL+GGV+TMG+LGLF+GPVLMA++  IW+E ++  K+ +
Sbjct: 300 PIKLPFLPTFFGLIGGVKTMGMLGLFVGPVLMAILVAIWREWLLEAKQPE 349


>gi|217974961|ref|YP_002359712.1| hypothetical protein Sbal223_3812 [Shewanella baltica OS223]
 gi|217500096|gb|ACK48289.1| protein of unknown function UPF0118 [Shewanella baltica OS223]
          Length = 356

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 165/349 (47%), Positives = 229/349 (65%), Gaps = 2/349 (0%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   I R +++ ++   ++F   F  P L+ALI+ F+SWP+Y   ++K    S   A
Sbjct: 3   PIFSNAAIGRSLLILLLCAGVFFFIDFLVPALAALIVCFSSWPLYQKLLAKCGGRSALAA 62

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASEL 122
            IA   ++   I+PL+F+F Y + E++  V  +V  NQHG PVP W+ D+P  G W +  
Sbjct: 63  TIALCCIVLGLIIPLVFVFSYALQEIRTWVDWLVFTNQHGSPVPLWIKDLPWMGEWLTLQ 122

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           W + +  P  L  +       N    I R+  + G   L   L+++FM+I LFF Y+DG 
Sbjct: 123 WQQFIGEPHELGKIISAISGQNLSG-ISRWVLQLGWNTLGLLLTLLFMLITLFFLYKDGQ 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +++QLD +GE + PA W   SR+VP  + ST +GMT+IAIGEG+VLG AYW+AGVPS V
Sbjct: 182 QVAKQLDIVGERVLPARWHSFSRVVPATVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSAV 241

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           A GV+TA MA++PGGAP  FT +S+YL+  G++     LFLWG+IELFIVDKTLRP LVG
Sbjct: 242 AFGVLTAFMALVPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLVG 301

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           GPIKLPFLPTFFGL+GGV+TMG +GLF+GPVLMAL+  IW+E +    E
Sbjct: 302 GPIKLPFLPTFFGLIGGVKTMGFVGLFVGPVLMALLVAIWREWLREEPE 350


>gi|120597402|ref|YP_961976.1| hypothetical protein Sputw3181_0571 [Shewanella sp. W3-18-1]
 gi|146294457|ref|YP_001184881.1| hypothetical protein Sputcn32_3370 [Shewanella putrefaciens CN-32]
 gi|120557495|gb|ABM23422.1| protein of unknown function UPF0118 [Shewanella sp. W3-18-1]
 gi|145566147|gb|ABP77082.1| protein of unknown function UPF0118 [Shewanella putrefaciens CN-32]
          Length = 360

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 164/350 (46%), Positives = 228/350 (65%), Gaps = 2/350 (0%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   I R +++ ++   ++F   F  P L+ALI+ F+SWP+Y   ++K    S   A
Sbjct: 3   PIFSNAAIGRTLLILLLCAGVFFFIDFLVPALAALIVCFSSWPLYQKLLAKCRGRSALAA 62

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASEL 122
            IA V ++   ++PL F+F Y + E++  V  +V  NQHG  VP W+ ++P  G W +  
Sbjct: 63  TIALVLIVLGLVIPLAFVFSYALHEIRGWVEWLVHTNQHGAAVPVWIKELPLIGEWLTLQ 122

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           W + +  P  L  +       N    I R+  + G   L   L+++FM+I LFF Y+DG 
Sbjct: 123 WHEFIGEPHELGKIISAISGQNLSG-ISRWVLQLGWNTLGLLLTLLFMLITLFFLYKDGE 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +++QLD +GE + PA W   SR+VP  + ST +GMT+IAIGEG+VLG AYW+AGVPS V
Sbjct: 182 HVAKQLDIVGERVLPARWHSFSRVVPATVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSAV 241

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           A GV+TA MA+IPGGAP  FT +S+YL+  G++     LFLWG+IELFIVDKTLRP LVG
Sbjct: 242 AFGVLTAFMALIPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLVG 301

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           GPIKLPFLPTFFGL+GGV+TMG +GLF+GPVLMAL+  IW+E +    E 
Sbjct: 302 GPIKLPFLPTFFGLIGGVKTMGFVGLFVGPVLMALLVAIWREWLREEPET 351


>gi|24372067|ref|NP_716109.1| hypothetical protein SO_0472 [Shewanella oneidensis MR-1]
 gi|24345945|gb|AAN53554.1|AE015495_8 membrane protein, putative [Shewanella oneidensis MR-1]
          Length = 373

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 166/349 (47%), Positives = 231/349 (66%), Gaps = 2/349 (0%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +++   + R +++ ++   ++F   F  P L+ALII F+SWP+Y   + K    S   A 
Sbjct: 4   IISNAAVGRTLLILLLCAGVFFFIDFLVPALAALIICFSSWPLYKKLLVKCGGRSAVAAS 63

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELW 123
           IA V ++   I PL+F+F Y + E++     +V ANQHG PVP W+ D+P  G W +  W
Sbjct: 64  IALVLIVLGLITPLIFVFSYALQEIRIWAEWLVYANQHGAPVPLWIKDLPWVGEWLTLQW 123

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            + +  P  L  +       N    I R+  + G   L   L+++FM+I LFF Y+DG S
Sbjct: 124 QQFIGEPHELGQIVSAISGQNLTG-ISRWVLQLGWNTLGLLLTLLFMLITLFFLYKDGES 182

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +++Q+D +GE + PA W + SR+VP  + ST +GMT+IAIGEG+VLG AYW+AGVPS VA
Sbjct: 183 VAKQVDVVGERILPARWYRFSRVVPATVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSAVA 242

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            GV+TA MA+IPGGAP  FT +S+YL+  G++     LFLWG+IELFIVDKTLRP LVGG
Sbjct: 243 FGVLTAFMALIPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLVGG 302

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           PIKLPFLPTFFGL+GGV+TMG +GLF+GPVLMAL+  IW+E +    + 
Sbjct: 303 PIKLPFLPTFFGLIGGVKTMGFVGLFVGPVLMALLVAIWREWLRDDPDT 351


>gi|317405134|gb|EFV85477.1| hypothetical protein HMPREF0005_04798 [Achromobacter xylosoxidans
           C54]
          Length = 373

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 162/353 (45%), Positives = 229/353 (64%), Gaps = 2/353 (0%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           + +L    I RW+++ ++L  +YFL GF  P L+ALIIG  SWP+Y   +++    +   
Sbjct: 2   QPVLPAYLIARWLLLLVLLAGVYFLSGFLVPALAALIIGLASWPLYQRLVARCGGRTALA 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASE 121
           A +A + V+ + IVPL     Y + E     +  + AN+HG+ VP W++ +P  G   SE
Sbjct: 62  ASLALLVVIVVLIVPLSLALSYAIKEASTFFAWAIAANRHGVDVPNWITSMPVVGDRLSE 121

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            W  ++  P +L  L E     +  + I R             L+++FM+I LFF Y+DG
Sbjct: 122 YWQAYIGQPHALGALVEAVSGEHLGN-IYRMVLAATGNVFQLLLTVLFMLITLFFVYKDG 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +  QLD LGE + PA W++ SR+VP  I ST  GM +IA+GEG+VLG AYW+AGVPS 
Sbjct: 181 MRMVAQLDVLGERILPARWQRFSRVVPATINSTVTGMGLIALGEGVVLGIAYWVAGVPSP 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           V LGV+T  MA+IPGGAP+SFT VS+YL+  G++     L +WG++ELFIVDKTLRP LV
Sbjct: 241 VLLGVVTGFMALIPGGAPLSFTLVSLYLVGSGHVVAGIALMVWGSVELFIVDKTLRPRLV 300

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           GGP+KLPFLPTFFGLVGGV+TMG++GLF+GPVLMAL+  +W+E +   +  ++
Sbjct: 301 GGPVKLPFLPTFFGLVGGVKTMGIVGLFVGPVLMALLVAVWREWVHHEEAERD 353


>gi|311109042|ref|YP_003981895.1| hypothetical protein AXYL_05884 [Achromobacter xylosoxidans A8]
 gi|310763731|gb|ADP19180.1| hypothetical protein AXYL_05884 [Achromobacter xylosoxidans A8]
          Length = 366

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 161/358 (44%), Positives = 229/358 (63%), Gaps = 2/358 (0%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           + +L    I RW+++ ++L  +YFL GF  P L+ALIIG  SWP+Y   +++    +   
Sbjct: 2   QPVLPAYLIARWLLLLVLLAGVYFLSGFLVPALAALIIGLASWPLYQRLVARCGGRTALA 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASE 121
           A +A + V+ + IVP+     Y + E     +  + AN+HG+ VP W++ +P  G    +
Sbjct: 62  ASLALLVVIVVLIVPMSLALSYAIKEASTFFAWAIAANRHGVDVPNWITSMPVVGERLGQ 121

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            W  ++  P +L  L E     +  + I R             L+++FM+I LFF Y+DG
Sbjct: 122 YWEAYIGQPHALGALVEAVSGEHLGN-IYRMVLAATGNVFQLLLTVLFMLITLFFVYKDG 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +  QLD LGE + PA W++ SR+VP  I ST  GM +IA+GEGLVLG AYW+AGVPS 
Sbjct: 181 IRMVAQLDVLGERILPARWQRFSRVVPATINSTVTGMGLIALGEGLVLGIAYWVAGVPSP 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           V LGV+T  MA+IPGGAP+SFT VS+YL+  G++     L +WG++ELFIVDKTLRP LV
Sbjct: 241 VLLGVVTGFMALIPGGAPLSFTLVSLYLVGSGHLVAGIALMVWGSVELFIVDKTLRPRLV 300

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           GGP+KLPFLPTFFGLVGGV+TMG++GLF+GPVLMAL+  +W+E +    + ++    N
Sbjct: 301 GGPVKLPFLPTFFGLVGGVKTMGIVGLFVGPVLMALLVAVWREWVHHEVQERDAARIN 358


>gi|262370626|ref|ZP_06063951.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262314426|gb|EEY95468.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 373

 Score =  242 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 96/356 (26%), Positives = 179/356 (50%), Gaps = 8/356 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIIL-VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M+      Q ++ + ++FI+  +S   LK F  PVL A II + +WP+Y S         
Sbjct: 1   MQRYAPALQKVLLFGLIFILFYLSFQVLKYFIVPVLWAAIIAYITWPLYHSVQKLCGPRP 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPG-GM 117
           T  A I    V+ +  +PL F  +    E + L  ++      G + VP+++ D+P  G 
Sbjct: 61  TLSATIMISMVVLVVGIPLTFAIFMLQHEGRNLFYELQRQVFSGHLDVPQFIRDLPIIGK 120

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
             +    +  + P S+      + +++       +              + F +++LFFF
Sbjct: 121 EVTRTLKEINTDPNSIVQNVSGWFQSH-----LNYGRLVLSEISKNIFKLCFAVMSLFFF 175

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
           YRDG +I  Q+    E +           + +  R+   G+ + AI + L+ G +Y++AG
Sbjct: 176 YRDGQTILNQVSKALEMVIGPRIHHYLDTISETTRAVVYGVGLTAIAQALLAGLSYFVAG 235

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           VP+ + L ++T I A+IP G P++++AVS++L  +G    A  + +WG   +   D  +R
Sbjct: 236 VPNPMVLTIVTFIFALIPFGPPVAYSAVSLWLFSQGQTIEAIGVMVWGVCVVSTADNVIR 295

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           P ++ G  ++PFL   FG++GG+ + G++GLF+GPV++A++  IW+E +     + 
Sbjct: 296 PLVISGATQIPFLLIMFGVLGGLASFGMVGLFVGPVILAVLLAIWREWLHEQVHDP 351


>gi|255319865|ref|ZP_05361070.1| putative membrane protein [Acinetobacter radioresistens SK82]
 gi|262380394|ref|ZP_06073548.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|255303184|gb|EET82396.1| putative membrane protein [Acinetobacter radioresistens SK82]
 gi|262297840|gb|EEY85755.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 372

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 97/363 (26%), Positives = 186/363 (51%), Gaps = 8/363 (2%)

Query: 1   MRETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M++     Q ++ + + FI + +  + LK F  PVL A II + +WP+Y S      + S
Sbjct: 1   MQQYAPTLQRVLLFGLFFILVFLGFHVLKYFIVPVLWAAIIAYMTWPLYLSIQRMCGQRS 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPG-GM 117
           +  A +  V ++ +  +PL F  +    E + L  ++      G + VP ++ ++P  G 
Sbjct: 61  SISASVMIVLIILVIGIPLTFAIFILQHEGRNLYYELQRQIFSGHVSVPDFIRELPIIGK 120

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
             +    +  + PQS+      +++ +       +            + + F I++LFFF
Sbjct: 121 EVTRTLKELNTDPQSITQNVAAWIQGH-----LGYGRFVLNEISKNIIKLCFAIMSLFFF 175

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
           YRDG +I +Q+ +  E +           + +  R+   G+ + AI + ++ G +Y +AG
Sbjct: 176 YRDGQTILRQVSTAMEKVIGPRIHHYMDTISETTRAVVYGVGLTAIAQAILAGLSYVVAG 235

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           VP+ + L + T ++A+IP G P+++ +V+++L  +G    A  +F WG   +   D  +R
Sbjct: 236 VPNPMVLTIATFLLALIPFGTPVAYGSVALWLFSQGQTVEAIGVFAWGVCIVSTSDNVIR 295

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           P ++ G  ++PFL   FG++GGV + GL+GLFIGPV++A+I  IW+E +    E +    
Sbjct: 296 PLVISGATQIPFLLIMFGVLGGVASFGLVGLFIGPVILAVILAIWREWLHETTEPEPMPD 355

Query: 358 SNF 360
           ++ 
Sbjct: 356 ASL 358


>gi|319427812|gb|ADV55886.1| protein of unknown function UPF0118 [Shewanella putrefaciens 200]
          Length = 360

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 164/349 (46%), Positives = 228/349 (65%), Gaps = 2/349 (0%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   I R +++ ++   ++F   F  P L+ALI+ F+SWP+Y   ++K    S   A
Sbjct: 3   PIFSNAAIGRTLLILLLCAGVFFFIDFLVPALAALIVCFSSWPLYQKLLAKCRGRSALAA 62

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASEL 122
            IA V ++   ++PL F+F Y + E++  V  +V  NQHG  VP W+ ++P  G W +  
Sbjct: 63  TIALVLIVLGLVIPLAFVFSYALHEIRGWVEWLVHTNQHGAAVPVWIKELPLIGEWLTLQ 122

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           W + +  P  L  +       N    I R+  + G   L   L+++FM+I LFF Y+DG 
Sbjct: 123 WHEFIGEPHELGKIISAISGQNLSG-ISRWVLQLGWNTLGLLLTLLFMLITLFFLYKDGE 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +++QLD +GE + PA W   SR+VP  + ST +GMT+IAIGEG+VLG AYW+AGVPS V
Sbjct: 182 HVAKQLDIVGERVLPARWHSFSRVVPATVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSAV 241

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           A GV+TA MA+IPGGAP  FT +S+YL+  G++     LFLWG+IELFIVDKTLRP LVG
Sbjct: 242 AFGVLTAFMALIPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLVG 301

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           GPIKLPFLPTFFGL+GGV+TMG +GLF+GPVLMAL+  IW+E +    E
Sbjct: 302 GPIKLPFLPTFFGLIGGVKTMGFVGLFVGPVLMALLVAIWREWLREEPE 350


>gi|330428410|gb|AEC19744.1| membrane protein [Pusillimonas sp. T7-7]
          Length = 361

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 171/356 (48%), Positives = 226/356 (63%), Gaps = 2/356 (0%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             +L    I RW+++ +ILV LYFL GF  PVL+ALII   SWP+Y   + +    +   
Sbjct: 2   HPVLPAFLIARWLLVLLILVGLYFLSGFLVPVLAALIISLASWPLYQRLLRRCHGRNALA 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASE 121
           A +A + V+ + IVPL     Y + E    ++  + AN+HG+PVP W+  +P  G   +E
Sbjct: 62  ASLALIIVIIVLIVPLSLALSYAVQEASNFIAWALAANRHGMPVPAWILALPLVGARLAE 121

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            WT +L  P +L  + E     +  + I R             L +IFM+I LFF Y+DG
Sbjct: 122 YWTTYLGEPHALGEMVEIVSGEHLGN-IYRMLLSATGDVFRLLLGVIFMLITLFFVYKDG 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I  QLD +G+ + P  W++ SR+VP  I ST  GM +IA+GEG+VLG AYW+AGVPS 
Sbjct: 181 AHILGQLDIVGDRILPGRWRRFSRVVPATINSTVTGMGLIALGEGVVLGLAYWIAGVPSP 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           V LGVIT  MA+IPGGAP+SF+ VS+YL+  G       LFLWG +ELFIVDKTLRP LV
Sbjct: 241 VLLGVITGFMALIPGGAPLSFSVVSLYLVGSGEPMAGLGLFLWGTVELFIVDKTLRPRLV 300

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           GGP+KLPFLPTFFGL+GGV+TMGL+GLF+GPVLMAL+  IW+E I        K+S
Sbjct: 301 GGPVKLPFLPTFFGLIGGVQTMGLVGLFVGPVLMALLVAIWREWIHEDDNKIAKLS 356


>gi|262377359|ref|ZP_06070583.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
 gi|262307812|gb|EEY88951.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
          Length = 376

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 96/356 (26%), Positives = 186/356 (52%), Gaps = 8/356 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIIL-VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M++     Q ++ + + FI++ +S + LK F  PV+ A II + +WP+Y S +       
Sbjct: 1   MQQYAPTLQKVLLFGLFFILIFLSFHILKYFIIPVVWAAIIAYMTWPLYQSVLRLCGNRP 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIP-GGM 117
           T  A +  ++V+ +F +P +F  +    E + L  ++      G + VP ++  +P  G 
Sbjct: 61  TLSATVMILAVILVFGLPFIFAIFMLQHEGRNLYFELQRQVFSGHLNVPDFIRGLPIVGK 120

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
             +    +  + PQS+ +   T+++ +       +              + F +++LFFF
Sbjct: 121 EITRTLNEINTDPQSIALSVSTWIQGH-----LNYGKVVLNEVSKNIFKLCFAVLSLFFF 175

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
           YRDG +I  Q+    E +           +    R+   G+ + AI + L+ G +Y++AG
Sbjct: 176 YRDGQTILNQVRKAFEMVVGPRVHHYFSTISATTRAVVYGVGLTAIAQSLLAGLSYFVAG 235

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           VP+ + L ++T I A+IP G P++++AV+++L  +G    A  + +WG   +   D  +R
Sbjct: 236 VPNPMVLTIVTFIFALIPFGPPLAYSAVALWLFSQGQTIEAIGVMVWGVCIVSTADNVIR 295

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           P ++ G  ++PFL   FG++GG+ + GL+G+FIGPV++A++  IW+E +     N+
Sbjct: 296 PLVISGATQIPFLLIMFGVLGGIASFGLVGVFIGPVILAVLLAIWREWLHESNLNE 351


>gi|330875659|gb|EGH09808.1| hypothetical protein PSYMP_10962 [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 348

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 82/331 (24%), Positives = 154/331 (46%), Gaps = 7/331 (2%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             L+ +  F++ ++   ++ F SWP+        +   +  A++  +  M L   PL++L
Sbjct: 19  ACLWVMAPFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAALVMCLCWMLLVAAPLVWL 78

Query: 82  FYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSET 139
            +     +++    +      G+P  P+WL+ IP  G     LWT       +     + 
Sbjct: 79  GFNLADHVRDATGLIKDIQVDGLPDPPQWLAGIPLVGERLVALWTTIDQQGAAFMATLKP 138

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            L   G   + R A + G   L+  LSI+F     FFFYRDG  ++  + SL E L    
Sbjct: 139 HLGQVGNWVLARSA-QIGSGILELTLSIVFA----FFFYRDGPRLAAFVLSLLERLIGDR 193

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            +    +V   ++    G+   A  + ++    + +AG+P  + LG++T + ++IP G P
Sbjct: 194 AQYYLDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALVLGILTFLFSLIPMGPP 253

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +   + +L+ +G    A  L +WG   +  VD  L+P+L+     LP +    G+ GG
Sbjct: 254 LVWLPATAWLVWQGEYGMAIFLGIWGMFVISGVDNVLKPYLISRGGNLPLVIVLLGVFGG 313

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +   G +GLFIGP L+A+   +  + + + +
Sbjct: 314 LLAFGFIGLFIGPTLLAVAYSLLTDWVGSER 344


>gi|330959036|gb|EGH59296.1| putative lipoprotein [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 349

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 81/336 (24%), Positives = 157/336 (46%), Gaps = 7/336 (2%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             L+ +  F++ ++   ++ F SWP+        +   +  A++ ++  M L   PL++L
Sbjct: 19  ACLWVMAPFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAALVMSLCWMLLVAAPLVWL 78

Query: 82  FYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSET 139
            +     +++    +      G+P  P+WL+ IP  G     LWT       +     + 
Sbjct: 79  GFNLADHVRDATGLIKNIQVDGLPDPPQWLAGIPLVGERLVALWTTIDQQGAAFMTTVKP 138

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
           +L   G   + R A + G   L+  LSI+F     FFFYRDG  ++  + SL E L    
Sbjct: 139 YLGEVGNWLLARSA-QIGGGILELTLSIVFA----FFFYRDGPRLAAFVLSLLERLIGDR 193

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            +    +V   ++    G+   A  + ++    + +AG+P  + LG++T + ++IP G P
Sbjct: 194 AQYYLDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALVLGILTFLFSLIPMGPP 253

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +   + +L+ +G    A  + +WG   +  VD  L+P+L+     LP +    G+ GG
Sbjct: 254 LVWLPATAWLVWQGEYGMAVFMGIWGMFVISGVDNVLKPYLISRGGNLPLVIVLLGVFGG 313

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +   G +GLFIGP L+A+   +  + + + +    +
Sbjct: 314 LLAFGFIGLFIGPTLLAVAYSLLTDWVGSERARNSR 349


>gi|257486360|ref|ZP_05640401.1| putative lipoprotein [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289628087|ref|ZP_06461041.1| putative lipoprotein [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289646709|ref|ZP_06478052.1| putative lipoprotein [Pseudomonas syringae pv. aesculi str. 2250]
 gi|320324915|gb|EFW80987.1| putative lipoprotein [Pseudomonas syringae pv. glycinea str. B076]
 gi|320329281|gb|EFW85278.1| putative lipoprotein [Pseudomonas syringae pv. glycinea str. race
           4]
 gi|330867463|gb|EGH02172.1| putative lipoprotein [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|331010639|gb|EGH90695.1| putative lipoprotein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 349

 Score =  238 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 82/336 (24%), Positives = 155/336 (46%), Gaps = 7/336 (2%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             L+ +  F++ ++   ++ F SWP+        +   +  A++  +  M L   PL++L
Sbjct: 19  ACLWVMAPFWSALIWGAVLAFASWPLMRLLTRWFKGRESLAALVMCLCWMLLVAAPLVWL 78

Query: 82  FYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSET 139
            +     +++    +      G+P  P+WL+ IP  G     LWT       +     + 
Sbjct: 79  GFNLADHVRDATGLIKDIQVDGLPDPPQWLAGIPLVGERLVALWTTIDQQGAAFMATLKP 138

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            L   G   + R A + G   L+  LSI+F     FFFYRDG  ++  + SL E L    
Sbjct: 139 HLGQVGNWVLARSA-QIGSGILELTLSIVFA----FFFYRDGPRLAAFVLSLLERLIGDR 193

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            +    +V   ++    G+   A  + ++    + +AG+P  + LG++T + ++IP G P
Sbjct: 194 AQYYLDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALVLGILTFLFSLIPMGPP 253

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +   + +L+ +G    A  L +WG   +  VD  L+P+L+     LP +    G+ GG
Sbjct: 254 LVWLPATAWLVWQGEYGMAIFLGIWGMFIISGVDNVLKPYLISRGGNLPLVIVLLGVFGG 313

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +   G +GLFIGP L+A+   +  + + + +    +
Sbjct: 314 LLAFGFIGLFIGPTLLAVAYSLLTDWVGSERARSSR 349


>gi|330987461|gb|EGH85564.1| putative lipoprotein [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 349

 Score =  238 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 82/336 (24%), Positives = 155/336 (46%), Gaps = 7/336 (2%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             L+ +  F++ ++   ++ F SWP+        +   +  A++  +  M L   PL++L
Sbjct: 19  ACLWVMAPFWSALIWGAVLAFASWPLMRLLTRWFKGRESLAALVMCLCWMLLVAAPLVWL 78

Query: 82  FYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSET 139
            +     +++    +      G+P  P+WL+ IP  G     LWT       +     + 
Sbjct: 79  GFNLADHVRDATGLIKDIQVDGLPDPPQWLAGIPLVGERLVALWTTIDQQGAAFMATLKP 138

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            L   G   + R A + G   L+  LSI+F     FFFYRDG  ++  + SL E L    
Sbjct: 139 HLGQVGNWVLARSA-QIGSGILELTLSIVFA----FFFYRDGPRLAAFVLSLLERLIGER 193

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            +    +V   ++    G+   A  + ++    + +AG+P  + LG++T + ++IP G P
Sbjct: 194 AQYYLDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALVLGILTFLFSLIPMGPP 253

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +   + +L+ +G    A  L +WG   +  VD  L+P+L+     LP +    G+ GG
Sbjct: 254 LVWLPATAWLVWQGEYGMAIFLGIWGMFIISGVDNVLKPYLISRGGNLPLVIVLLGVFGG 313

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +   G +GLFIGP L+A+   +  + + + +    +
Sbjct: 314 LLAFGFIGLFIGPTLLAVAYSLLTDWVGSERARSSR 349


>gi|71734505|ref|YP_274223.1| putative lipoprotein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71555058|gb|AAZ34269.1| lipoprotein, putative [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 349

 Score =  238 bits (609), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 82/336 (24%), Positives = 155/336 (46%), Gaps = 7/336 (2%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             L+ +  F++ ++   ++ F SWP+        +   +  A++  +  M L   PL++L
Sbjct: 19  ACLWVMAPFWSALIWGAVLAFASWPLMRLLNRWFKGRESLAALVMCLCWMLLVAAPLVWL 78

Query: 82  FYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSET 139
            +     +++    +      G+P  P+WL+ IP  G     LWT       +     + 
Sbjct: 79  GFNLADHVRDATGLIKDIQVDGLPDPPQWLAGIPLVGERLVALWTTIDQQGAAFMATLKP 138

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            L   G   + R A + G   L+  LSI+F     FFFYRDG  ++  + SL E L    
Sbjct: 139 HLGQVGNWVLARSA-QIGSGILELTLSIVFA----FFFYRDGPRLAAFVLSLLERLIGDR 193

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            +    +V   ++    G+   A  + ++    + +AG+P  + LG++T + ++IP G P
Sbjct: 194 AQYYLDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALVLGILTFLFSLIPMGPP 253

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +   + +L+ +G    A  L +WG   +  VD  L+P+L+     LP +    G+ GG
Sbjct: 254 LVWLPATAWLVWQGEYGMAIFLGIWGMFIISGVDNVLKPYLISRGGNLPLVIVLLGVFGG 313

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +   G +GLFIGP L+A+   +  + + + +    +
Sbjct: 314 LLAFGFIGLFIGPTLLAVAYSLLTDWVGSERARSSR 349


>gi|330980752|gb|EGH78855.1| hypothetical protein PSYAP_19606 [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 348

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 82/334 (24%), Positives = 154/334 (46%), Gaps = 7/334 (2%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             L+ +  F++ ++   ++ F SWP+        +   +  A++  +  M L   PL++L
Sbjct: 19  ACLWVMAPFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAALVMCLCWMLLVAAPLVWL 78

Query: 82  FYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSET 139
            +     +++    +      G+P  P+WL+ IP  G     LWT       +     + 
Sbjct: 79  GFNLADHVRDATGLIKDIQVDGLPDPPQWLAGIPLVGERLVALWTTIDQQGAAFMATLKP 138

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            L   G   + R A + G   L+  LSI+F     FFFYRDG  ++  + SL E L    
Sbjct: 139 HLGQVGNWILARSA-QIGSGILELTLSIVFA----FFFYRDGPRLAAFVLSLLERLIGER 193

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            +    +V   ++    G+   A  + ++    + +AG+P  + LG++T + ++IP G P
Sbjct: 194 AQYYLDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALVLGILTFLFSLIPMGPP 253

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +   + +L+ +G    A  L +WG   +  VD  L+P+L+     LP +    G+ GG
Sbjct: 254 LVWLPATAWLVWQGEYGMAIFLGIWGMFIISGVDNVLKPYLISRGGNLPLVIVLLGVFGG 313

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +   G +GLFIGP L+A+   +  + + + +   
Sbjct: 314 LLAFGFIGLFIGPTLLAVAYSLLTDWVGSERARP 347


>gi|28869423|ref|NP_792042.1| lipoprotein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28852664|gb|AAO55737.1| lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
 gi|331016291|gb|EGH96347.1| lipoprotein, putative [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 349

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 83/336 (24%), Positives = 157/336 (46%), Gaps = 7/336 (2%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             L+ +  F++ ++   ++ F SWP+        +   +  A++  +  M L   PL++L
Sbjct: 19  ACLWVMAPFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAALVMCLCWMLLVAAPLVWL 78

Query: 82  FYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSET 139
            +     +++  + +      G+P  P+WL+ IP  G     LWT       +     + 
Sbjct: 79  GFNLADHVRDATALIKDIQVDGLPDPPQWLAGIPLVGERLVGLWTTIDQQGAAFMTTVKP 138

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
           +L   G   + R A + G   L+  LSI+F     FFFYRDG  ++  + SL E L    
Sbjct: 139 YLGEVGNWLLARSA-QIGGGILELTLSIVFA----FFFYRDGPRLAAFVLSLLERLIGDR 193

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            +    +V   ++    G+   A  + L+    + +AG+P  + LG++T + ++IP G P
Sbjct: 194 AQYYLDLVAGTVQRVVNGVIGTAAAQALLALIGFLIAGIPGALVLGILTFLFSLIPMGPP 253

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +   + +L+ +G    A  L +WG   +  VD  L+P+L+     LP +    G+ GG
Sbjct: 254 LVWLPATAWLVWQGEYGMAIFLGIWGMFVISGVDNVLKPYLISRGGNLPLVIVLLGVFGG 313

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +   G +GLFIGP L+A+   +  + + + +    +
Sbjct: 314 LLAFGFIGLFIGPTLLAVAYSLLTDWVGSERARNPR 349


>gi|312959876|ref|ZP_07774391.1| hypothetical protein PFWH6_1780 [Pseudomonas fluorescens WH6]
 gi|311285823|gb|EFQ64389.1| hypothetical protein PFWH6_1780 [Pseudomonas fluorescens WH6]
          Length = 353

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 86/355 (24%), Positives = 164/355 (46%), Gaps = 7/355 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + N + +++ +++ +   S + +  F++ +    ++ F SWP+            +  A 
Sbjct: 2   LNNDRLLVQILLLVLFGASFWVMAPFWSALFWGAVLAFASWPLMVLLTRWLGGRESLAAG 61

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASEL 122
           I T+  M L  VPL++L +     +++ V+ +      G+P  P WL  IP  G     +
Sbjct: 62  ILTLGWMLLVAVPLVWLGFNLADHVRDAVALIKDIQVDGLPEAPTWLGSIPFVGERLVGM 121

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           W        +L +  + +L   G   + R A + G   L+  LS++F    +FFFYRDG 
Sbjct: 122 WNSIDQQGAALMVSIKPYLGQVGNWLLARSA-QIGGGILELTLSLVF----VFFFYRDGP 176

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            ++  +  L E L          +V   ++    G+   A  + ++    + +AGVP  +
Sbjct: 177 RLAMFVHRLLERLIGDRAGYYIELVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGVPGAL 236

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            LG++T ++++IP G P+ +   + +L  KG+   A  L +WG   +  VD  L+P+L+ 
Sbjct: 237 VLGIVTFLLSLIPMGPPLVWIPATAWLAWKGDYTYAVFLGVWGTFIISGVDNVLKPYLIS 296

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
               LP +    G+ GG+   G +GLFIGP L+A+   +  +        + +  
Sbjct: 297 RGGNLPLVIVLLGVFGGLIAFGFIGLFIGPTLLAVAYSLLMDWSATHAPRRPEDK 351


>gi|66045269|ref|YP_235110.1| hypothetical protein Psyr_2029 [Pseudomonas syringae pv. syringae
           B728a]
 gi|302187399|ref|ZP_07264072.1| hypothetical protein Psyrps6_13658 [Pseudomonas syringae pv.
           syringae 642]
 gi|63255976|gb|AAY37072.1| Protein of unknown function UPF0118 [Pseudomonas syringae pv.
           syringae B728a]
 gi|330973446|gb|EGH73512.1| hypothetical protein PSYAR_23439 [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 348

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 82/331 (24%), Positives = 154/331 (46%), Gaps = 7/331 (2%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             L+ +  F++ ++   ++ F SWP+        +   +  A++  +  M L   PL++L
Sbjct: 19  ACLWVMAPFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAALVMCLCWMLLVAAPLVWL 78

Query: 82  FYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSET 139
            +     +++    +      G+P  P+WL+ IP  G     LWT       +     + 
Sbjct: 79  GFNLADHVRDATGLIKDIQVDGLPDPPQWLAGIPLVGERLVALWTTIDQQGAAFMATLKP 138

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            L   G   + R A + G   L+  LSI+F     FFFYRDG  ++  + SL E L    
Sbjct: 139 HLGQVGNWILARSA-QIGSGILELTLSIVFA----FFFYRDGPRLAAFVLSLLERLIGER 193

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            +    +V   ++    G+   A  + ++    + +AG+P  + LG++T + ++IP G P
Sbjct: 194 AQYYLDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALVLGILTFLFSLIPMGPP 253

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +   + +L+ +G    A  L +WG   +  VD  L+P+L+     LP +    G+ GG
Sbjct: 254 LVWLPATAWLVWQGEYGMAIFLGIWGMFIISGVDNVLKPYLISRGGNLPLVIVLLGVFGG 313

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +   G +GLFIGP L+A+   +  + + + +
Sbjct: 314 LLAFGFIGLFIGPTLLAVAYSLLTDWVGSER 344


>gi|213968162|ref|ZP_03396307.1| lipoprotein [Pseudomonas syringae pv. tomato T1]
 gi|301383833|ref|ZP_07232251.1| lipoprotein, putative [Pseudomonas syringae pv. tomato Max13]
 gi|302133398|ref|ZP_07259388.1| lipoprotein, putative [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213927142|gb|EEB60692.1| lipoprotein [Pseudomonas syringae pv. tomato T1]
          Length = 349

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 82/336 (24%), Positives = 156/336 (46%), Gaps = 7/336 (2%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             L+ +  F++ ++   ++ F SWP+        +   +  A++  +  M L   PL++L
Sbjct: 19  ACLWVMAPFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAALVMCLCWMLLVAAPLVWL 78

Query: 82  FYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSET 139
            +     +++  + +      G+P  P+WL+ IP  G      WT       +     + 
Sbjct: 79  GFNLADHVRDATALIKDIQVDGLPDPPQWLAGIPLVGERLVGFWTTIDQQGAAFMTTVKP 138

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
           +L   G   + R A + G   L+  LSI+F     FFFYRDG  ++  + SL E L    
Sbjct: 139 YLGEVGNWLLARSA-QIGGGILELTLSIVFA----FFFYRDGPRLAAFVLSLLERLIGDR 193

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            +    +V   ++    G+   A  + L+    + +AG+P  + LG++T + ++IP G P
Sbjct: 194 AQYYLDLVAGTVQRVVNGVIGTAAAQALLALIGFLIAGIPGALVLGILTFLFSLIPMGPP 253

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +   + +L+ +G    A  L +WG   +  VD  L+P+L+     LP +    G+ GG
Sbjct: 254 LVWLPATAWLVWQGEYGMAIFLGIWGMFVISGVDNVLKPYLISRGGNLPLVIVLLGVFGG 313

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +   G +GLFIGP L+A+   +  + + + +    +
Sbjct: 314 LLAFGFIGLFIGPTLLAVAYSLLTDWVGSERARNPR 349


>gi|330888175|gb|EGH20836.1| putative lipoprotein [Pseudomonas syringae pv. mori str. 301020]
          Length = 349

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 82/336 (24%), Positives = 155/336 (46%), Gaps = 7/336 (2%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             L+ +  F++ ++   ++ F SWP+        +   +  A++  +  M L   PL++L
Sbjct: 19  ACLWVMAPFWSALIWGAVLAFASWPLMRLLTRWFKGRESLAALVMCLCWMLLVAAPLVWL 78

Query: 82  FYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSET 139
            +     +++    +      G+P  P+WL+ IP  G     LWT       +     + 
Sbjct: 79  GFNLADHVRDATGLIKDIQVDGLPDPPQWLAGIPLVGERLVALWTTIDQQGAAFMATLKP 138

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            L   G   + R A + G   L+  LSI+F     FFFYRDG  ++  + SL E L    
Sbjct: 139 HLGQVGNWVLARSA-QIGSGILELTLSIVFA----FFFYRDGPRLAAFVLSLLERLIGDR 193

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            +    +V   ++    G+   A  + ++    + +AG+P  + LG++T + ++IP G P
Sbjct: 194 AQYYLDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALVLGILTFLFSLIPMGPP 253

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +   + +L+ +G    A  L +WG   +  VD  L+P+L+     LP +    G+ GG
Sbjct: 254 LVWLPATAWLVWQGEYGMAIFLGIWGIFIISGVDNVLKPYLISRGGNLPLVIVLLGVFGG 313

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +   G +GLFIGP L+A+   +  + + + +    +
Sbjct: 314 LLAFGFIGLFIGPTLLAVAYSLLTDWVGSERARSSR 349


>gi|330965376|gb|EGH65636.1| lipoprotein [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 349

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 82/336 (24%), Positives = 157/336 (46%), Gaps = 7/336 (2%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             L+ +  F++ ++   ++ F SWP+        +   +  A++  +  M L   PL++L
Sbjct: 19  ACLWVMAPFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAALVMCLCWMLLVAAPLVWL 78

Query: 82  FYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSET 139
            +     +++  + +      G+P  P+WL+ IP  G     +WT       +     + 
Sbjct: 79  GFNLADHVRDATALIKDIQVDGLPDPPQWLAGIPLVGERLVGVWTTIDQQGAAFMTTVKP 138

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
           +L   G   + R A + G   L+  LSI+F     FFFYRDG  ++  + SL E L    
Sbjct: 139 YLGEVGNWLLARSA-QIGGGILELTLSIVFA----FFFYRDGPRLAAFVLSLLERLIGDR 193

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            +    +V   ++    G+   A  + L+    + +AG+P  + LG++T + ++IP G P
Sbjct: 194 AQYYLDLVAGTVQRVVNGVIGTAAAQALLALIGFLIAGIPGALVLGILTFLFSLIPMGPP 253

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +   + +L+ +G    A  L +WG   +  VD  L+P+L+     LP +    G+ GG
Sbjct: 254 LVWLPATAWLVWQGEYGMAIFLGIWGMFVISGVDNVLKPYLISRGGNLPLVIVLLGVFGG 313

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +   G +GLFIGP L+A+   +  + + + +    +
Sbjct: 314 LLAFGFIGLFIGPTLLAVAYSLLTDWVGSERARNPR 349


>gi|70729140|ref|YP_258876.1| hypothetical protein PFL_1750 [Pseudomonas fluorescens Pf-5]
 gi|68343439|gb|AAY91045.1| membrane protein, putative [Pseudomonas fluorescens Pf-5]
          Length = 350

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 86/336 (25%), Positives = 153/336 (45%), Gaps = 7/336 (2%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
            S + +  F++ +    ++ F SWP+            +  A + T+  M L   PL++L
Sbjct: 19  ASFWVMAPFWSALFWGAVLAFASWPLMRLLTRWLNGRESLAAALLTLGWMVLVAAPLVWL 78

Query: 82  FYYGMLEMKELVSKVVLANQHGIPV-PRWLSDIP-GGMWASELWTKHLSHPQSLKILSET 139
                  +++  + +      G+P  P WL ++P  G     LW        +L +  + 
Sbjct: 79  GLNLADHVRDATAFIKDVQVDGLPAAPEWLGNLPLVGERLVGLWNSIDQQGAALMLAVKP 138

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
           +L   G   + R A + G   L+  LSI+F    +FFFYRDG  ++  +  L E L    
Sbjct: 139 YLGQVGNWLLARSA-QIGGGILELTLSIVF----VFFFYRDGPRLALFVHKLLERLIGER 193

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
                 +V   ++    G+   A  +GL+    + +AGVP  + LG++T ++++IP G P
Sbjct: 194 AGYYIDLVAGTVQRVVNGVIGTAAAQGLLALIGFLIAGVPGALVLGIVTFLLSLIPMGPP 253

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +   + +L  KG    A  L +WG   +  VD  L+P+L+     LP +    G+ GG
Sbjct: 254 LVWIPATAWLAWKGEYGMAVFLGIWGTFIISGVDNVLKPYLISRGGNLPLVIVLLGVFGG 313

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +   G +GLFIGP L+A+   +  +   +    +E 
Sbjct: 314 LIAFGFIGLFIGPTLLAVAYSLLLDWSASQARAQEP 349


>gi|160898931|ref|YP_001564513.1| hypothetical protein Daci_3492 [Delftia acidovorans SPH-1]
 gi|160364515|gb|ABX36128.1| protein of unknown function UPF0118 [Delftia acidovorans SPH-1]
          Length = 387

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 74/353 (20%), Positives = 145/353 (41%), Gaps = 5/353 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +   +     +++   +     L  F   +   + +     P++   +++    +   A+
Sbjct: 4   LPLHKRTFMLLLIAATIGFGAVLWEFMGAIFWGVALAILFSPLHRRLLARMPRRTNLAAL 63

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWASELW 123
              +  + + I+PL  +    + E   +  +V   N   G  + + +  +P   W +   
Sbjct: 64  STLLLCLVVAILPLALIGASLVREASLIYERVNSGNLDAGTYLQQIMDALP--SWVTPWL 121

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +      +      + +           A   G     + +    M+  LFF  RDG  
Sbjct: 122 ERLHLGSLAELQDKLSSIAMQASKLAATKALGIGQNTFGFLVGFCVMLYLLFFLLRDGRD 181

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           ++Q++  +   L   +  ++S     VIR+T  G   +A  +G + G  +W+ G+   V 
Sbjct: 182 LTQRI-RMAIPLQADHKAELSSKFTTVIRATVKGNLAVAAAQGALGGLIFWILGIQGPVL 240

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            GV+ A ++++P  GA + +  V+IY L  G +     L  +G + + +VD  LRP LVG
Sbjct: 241 WGVVMAFLSLLPAVGAGLIWAPVAIYFLATGAMGKGLILIAYGVLVIGLVDNVLRPLLVG 300

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
              K+P        +GG+   GL G  IGPV+ AL   IW        +++EK
Sbjct: 301 KDTKMPDYIVLISTLGGMALFGLTGFVIGPVIAALFMAIWDMFSRMQVQDEEK 353


>gi|289679981|ref|ZP_06500871.1| hypothetical protein PsyrpsF_42172 [Pseudomonas syringae pv.
           syringae FF5]
          Length = 348

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 82/334 (24%), Positives = 154/334 (46%), Gaps = 7/334 (2%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             L+ +  F++ ++   ++ F SWP+        +   +  A++  +  M L   PL++L
Sbjct: 19  ACLWVMAPFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAALVMCLCWMLLVAAPLVWL 78

Query: 82  FYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSET 139
            +     +++    +      G+P  P+WL+ IP  G     LWT       +     + 
Sbjct: 79  GFNLADHVRDATGLIKDIQVDGLPDPPQWLAGIPLVGERLVALWTTIDQQGAAFMATLKP 138

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            L   G   + R A + G   L+  LSI+F     FFFYRDG  ++  + SL E L    
Sbjct: 139 HLGQVGNWILARSA-QIGSGILELTLSIVFA----FFFYRDGPRLAAFVLSLLERLIGER 193

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            +    +V   ++    G+   A  + ++    + +AG+P  + LG++T + ++IP G P
Sbjct: 194 AQYYLDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALVLGILTFLFSLIPMGPP 253

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +   + +L+ +G    A  L +WG   +  VD  L+P+L+     LP +    G+ GG
Sbjct: 254 LVWLPATAWLVWQGEYGMAIFLGIWGMFIISGVDNVLKPYLISRGGNLPLVIVLLGVFGG 313

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +   G +GLFIGP L+A+   +  + + + +   
Sbjct: 314 LLAFGFIGLFIGPTLLAVAYSLLTDWVGSERARP 347


>gi|158424265|ref|YP_001525557.1| hypothetical protein AZC_2641 [Azorhizobium caulinodans ORS 571]
 gi|158331154|dbj|BAF88639.1| putative membrane protein [Azorhizobium caulinodans ORS 571]
          Length = 388

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 76/338 (22%), Positives = 144/338 (42%), Gaps = 3/338 (0%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              QG    +I+ + +   + L  F+  +L A+I+     P+           +   A +
Sbjct: 42  NVQQGSFLALIVLVSVAFAWLLLPFYGALLWAVILAILFNPLNRWLTRLLGGRANLAAAL 101

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           + ++ +C+ ++P   +      E  EL  +V     +   +     D+        L   
Sbjct: 102 SVLACICIVVIPGSMILASLAREASELYQQVSSRQFNPTEITARAHDLLPDFVKDLLPPF 161

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                + ++    +FL       I   A   G       +S+  M+  LFF +RDG S++
Sbjct: 162 TGDTFKEIESRLASFLG-QASQVIASSAVSVGQGTAQLFVSLGVMVYVLFFLFRDGASLA 220

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +      L P + + +      V+++T  G  IIA+ +GL+ G A+W  G+ + +  G
Sbjct: 221 LAIRRTSP-LSPHHTESLFAKFSDVLKATVKGNVIIALVQGLIGGLAFWGLGIGAPLLWG 279

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           V  A+++++P  GA + +   + YL++ G       L   G   + ++D  LRP LVG  
Sbjct: 280 VSMAVLSLVPAVGAALVWGPTAAYLMLSGQYLKGAILLGIGIFVISMIDNLLRPPLVGKG 339

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            +LP        +GG+   G+ G  IGP++ A+   IW
Sbjct: 340 TRLPDYMVLVSTLGGISLFGVNGFVIGPLIAAMFVAIW 377


>gi|229589365|ref|YP_002871484.1| hypothetical protein PFLU1848 [Pseudomonas fluorescens SBW25]
 gi|229361231|emb|CAY48095.1| putative membrane protein [Pseudomonas fluorescens SBW25]
          Length = 353

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 84/355 (23%), Positives = 164/355 (46%), Gaps = 7/355 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + N + +++ +++ +   S + +  F++ +    ++ F SWP+            +  A 
Sbjct: 2   LNNDRLLVQILLLVLFGASFWVMAPFWSALFWGAVLAFASWPLMVLLTRWLGGRESLAAG 61

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV-PRWLSDIP-GGMWASEL 122
           I T+  M L  +PL++L +     +++  + +      G+P  P WL  IP  G     +
Sbjct: 62  ILTLCWMLLVALPLVWLGFNLADHVRDATALIKDIQVDGLPAAPTWLGSIPFVGERLVAM 121

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           W        +L +  + +L   G   + R A + G   L+  LS++F    +FFFYRDG 
Sbjct: 122 WDSIDQQGAALMVSIKPYLGQVGNWLLARSA-QIGGGILELTLSLVF----VFFFYRDGP 176

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            ++  +  L E L          +V   ++    G+   A  + ++    + +AGVP  +
Sbjct: 177 RLAMFVHRLLERLIGDRAGYYIELVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGVPGAL 236

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            LG++T ++++IP G P+ +   + +L  KG+   A  L +WG   +  VD  L+P+L+ 
Sbjct: 237 VLGIVTFLLSLIPMGPPLVWIPATAWLAWKGDYTYAVFLGVWGTFIISGVDNVLKPYLIS 296

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
               LP +    G+ GG+   G +GLFIGP L+A+   +  +      + + +  
Sbjct: 297 RGGNLPLVIVLLGVFGGLIAFGFIGLFIGPTLLAVAYSLLMDWSATQAQGRREDK 351


>gi|330951703|gb|EGH51963.1| hypothetical protein PSYCIT7_10049 [Pseudomonas syringae Cit 7]
          Length = 348

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 82/331 (24%), Positives = 154/331 (46%), Gaps = 7/331 (2%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             L+ +  F++ ++   ++ F SWP+        +   +  A++  +  M L   PL++L
Sbjct: 19  ACLWVMAPFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAALVMCLCWMLLVAAPLVWL 78

Query: 82  FYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSET 139
            +     +++    +      G+P  P+WL+ IP  G     LWT       +     + 
Sbjct: 79  GFNLADHVRDATGLIKDIQVDGLPDPPQWLAGIPLVGERLVALWTTIDQQGAAFMATLKP 138

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            L   G   + R A + G   L+  LSI+F     FFFYRDG  ++  + SL E L    
Sbjct: 139 HLGQVGNWVLARSA-QIGSGILELTLSIVFA----FFFYRDGPRLAAFVLSLLERLIGEG 193

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            +    +V   ++    G+   A  + ++    + +AG+P  + LG++T + ++IP G P
Sbjct: 194 AQYYLDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALVLGILTFLFSLIPMGPP 253

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +   + +L+ +G    A  L +WG   +  VD  L+P+L+     LP +    G+ GG
Sbjct: 254 LVWLPATAWLVWQGEYGMAIFLGIWGMFIISGVDNVLKPYLISRGGNLPLVIVLLGVFGG 313

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +   G +GLFIGP L+A+   +  + + + +
Sbjct: 314 LLAFGFIGLFIGPTLLAVAYSLLTDWVGSER 344


>gi|167034729|ref|YP_001669960.1| hypothetical protein PputGB1_3734 [Pseudomonas putida GB-1]
 gi|166861217|gb|ABY99624.1| protein of unknown function UPF0118 [Pseudomonas putida GB-1]
          Length = 350

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 83/333 (24%), Positives = 153/333 (45%), Gaps = 7/333 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + +  F + +L   I+ F SWP+            T  A + T + + +  +PL++L + 
Sbjct: 22  WVMAPFISALLWGAILAFASWPLMRLLTRLLGGRETLAASLLTTAWILIVALPLVWLGFN 81

Query: 85  GMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLK 142
               +++  + V      G+P  P WL  IP  G      W        +L   ++ +  
Sbjct: 82  LADHIRDATAFVRDVQVDGLPEAPAWLGGIPFVGERLVNWWQSLDQQGAALLASAKPYFG 141

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
             G   + R A + G   L+  LS++F    +FFFYRDG  ++  +  L   L     + 
Sbjct: 142 QVGNWLLARSA-QIGSGVLELTLSLVF----VFFFYRDGPRLAAFVLRLLHRLMGERAEY 196

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             ++V   ++    G+   A  +GL+    + +AGVP  + LG++T ++++IP G P+++
Sbjct: 197 YLQLVAGTVQRVVNGVIGTAAAQGLLALIGFLIAGVPGAIVLGLVTFMLSLIPMGPPLAW 256

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              + +L+ KG    A  L +WG   +  VD  L+P+L+     LP +    G+ GG+  
Sbjct: 257 IPATGWLVWKGEYGMAVFLGIWGTFVISGVDNVLKPYLISRGGNLPLVIVLLGVFGGLLA 316

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            G +GLFIGP L+A+   +  +      +   +
Sbjct: 317 FGFIGLFIGPTLLAVGYSLLLDWSRNAAQQPPQ 349


>gi|302058489|ref|ZP_07250030.1| lipoprotein, putative [Pseudomonas syringae pv. tomato K40]
          Length = 349

 Score =  235 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 81/336 (24%), Positives = 155/336 (46%), Gaps = 7/336 (2%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             L+ +  F++ ++   ++ F SWP+        +   +  A++  +  M L   PL++L
Sbjct: 19  ACLWVMAPFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAALVMCLCWMLLVAAPLVWL 78

Query: 82  FYYGMLEMKELVSKVVLANQHGIP-VPRWLSDI-PGGMWASELWTKHLSHPQSLKILSET 139
            +     +++  + +      G+P  P+WL+ I   G      WT       +     + 
Sbjct: 79  GFNLADHVRDATALIKDIQVDGLPDPPQWLAGIQLVGERLVGFWTTIDQQGAAFMTTVKP 138

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
           +L   G   + R A + G   L+  LSI+F     FFFYRDG  ++  + SL E L    
Sbjct: 139 YLGEVGNWLLARSA-QIGGGILELTLSIVFA----FFFYRDGPRLAAFVLSLLERLIGDR 193

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            +    +V   ++    G+   A  + L+    + +AG+P  + LG++T + ++IP G P
Sbjct: 194 AQYYLDLVAGTVQRVVNGVIGTAAAQALLALIGFLIAGIPGALVLGILTFLFSLIPMGPP 253

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +   + +L+ +G    A  L +WG   +  VD  L+P+L+     LP +    G+ GG
Sbjct: 254 LVWLPATAWLVWQGEYGMAIFLGIWGMFVISGVDNVLKPYLISRGGNLPLVIVLLGVFGG 313

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +   G +GLFIGP L+A+   +  + + + +    +
Sbjct: 314 LLAFGFIGLFIGPTLLAVAYSLLTDWVGSERARNPR 349


>gi|325123669|gb|ADY83192.1| hypothetical protein BDGL_002606 [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 372

 Score =  235 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 97/357 (27%), Positives = 174/357 (48%), Gaps = 9/357 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIIL-VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE-S 58
           M     N Q ++ + + FI++ +    LK F  PVL A II + +WPIY        E  
Sbjct: 1   MHPYAPNLQRVLLFGLFFILIFLGFNILKYFIVPVLWAAIIAYMTWPIYLRIQRFFGESR 60

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIP-GG 116
           +T  A +    V+ +  +P     +    E + L   +      G + VP ++ D+P  G
Sbjct: 61  NTLNATLMISLVILVVGIPFTCAVFILQHEGRNLYFDLQRQVFSGHLSVPDFIRDLPFVG 120

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
              S    +  + P S       +++++       +            + + F + +LFF
Sbjct: 121 KEISRTLNELNNDPNSTIQNIAAWVQSH-----LSYGRVLLGEISKNIVKLGFAVFSLFF 175

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
           FYRDG  I  Q+    E +           + +  R+   G+ + AI + ++ G +Y++A
Sbjct: 176 FYRDGQMILSQVSKALEMVIGPRIHHYLDTISETTRAVVYGVGLTAIAQAVLAGLSYFVA 235

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           GVP+ + L ++T ++A+IP G PIS+  V ++L  +G    A  + +WG + +   D  +
Sbjct: 236 GVPNPMVLTIVTFLLALIPFGTPISYLGVGLWLFSQGQTMEAIGVVVWGVLIVSSSDNVI 295

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           RP ++ G  K+PFL   FG++GG+ + GL+GLFIGPV++A++  IW+E +    E +
Sbjct: 296 RPLVISGATKIPFLLIMFGVLGGIASFGLVGLFIGPVILAILLAIWREWLHETIEPE 352


>gi|293610761|ref|ZP_06693061.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827105|gb|EFF85470.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 372

 Score =  235 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 97/357 (27%), Positives = 174/357 (48%), Gaps = 9/357 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIIL-VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE-S 58
           M     N Q ++ + + FI++ +    LK F  PVL A II + +WPIY        E  
Sbjct: 1   MHPYAPNLQRVLLFGLFFILIFLGFNILKYFIVPVLWAAIIAYMTWPIYLRIQRFFGESR 60

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIP-GG 116
           +T  A +    V+ +  +P     +    E + L   +      G + VP ++ D+P  G
Sbjct: 61  NTLNATLMISLVILVVGIPFTCAVFILQHEGRNLYFDLQRQVFSGHLSVPDFIRDLPFVG 120

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
              S    +  + P S       +++++       +            + + F + +LFF
Sbjct: 121 KEISRTLNELNNDPNSTIQNIAAWVQSH-----LSYGRVLLGEISKNIVKLGFAVFSLFF 175

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
           FYRDG  I  Q+    E +           + +  R+   G+ + AI + ++ G +Y++A
Sbjct: 176 FYRDGQMILSQVSKALEMVIGPRIHHYLDTISETTRAVVYGVGLTAIAQAVLAGLSYFVA 235

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           GVP+ + L ++T ++A+IP G PIS+  V ++L  +G    A  + +WG + +   D  +
Sbjct: 236 GVPNPMVLTIVTFLLALIPFGTPISYLGVGLWLFSQGQTMEAIGVVVWGVLIVSSSDNVI 295

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           RP ++ G  K+PFL   FG++GG+ + GL+GLFIGPV++A++  IW+E +    E +
Sbjct: 296 RPLVISGATKIPFLLIMFGVLGGIASFGLVGLFIGPVILAILLAIWREWLHETIEPE 352


>gi|238025001|ref|YP_002909233.1| hypothetical protein bglu_2g16580 [Burkholderia glumae BGR1]
 gi|237879666|gb|ACR31998.1| Hypothetical protein bglu_2g16580 [Burkholderia glumae BGR1]
          Length = 364

 Score =  235 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 67/349 (19%), Positives = 143/349 (40%), Gaps = 3/349 (0%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E+  + Q   ++++  + +   + L  FF  +    I+     P+     +   +     
Sbjct: 15  ESAKDHQKFFQFLLTVVTIGFCWILIPFFGAIFWGTILAILFQPVQRWLAAHFGKRRNLA 74

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A++   +++ + I+PL F+    + E+  +  +V  +  +     + +           L
Sbjct: 75  ALVTLSAIVLIVILPLTFVAATLVQEIAYVYQQVKTSQPNMTLYLQQVVHALPTSLQRVL 134

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            +  L+    ++             F+   A   G     + +S   M+  +FF  RDG 
Sbjct: 135 HSYGLADIAGIQKKLTD-GAAAISQFVATQAFSIGQNTFQFVVSFGVMLYLVFFLLRDGG 193

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I +++      L   +   +      V+R+T  G   +A+ +G + G  +W+ G+   +
Sbjct: 194 EIGRRVRRALP-LDEDHKHLLLSKFTTVVRATVKGNIAVALVQGALGGVIFWILGIEGAL 252

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             G + A ++++P  GA + +   ++Y  + G I+    L ++    + +VD  LRP LV
Sbjct: 253 LWGSLMAFLSLLPAIGAGLVWAPAAVYFAVTGQIWKCVILVVFCVGVIGLVDNLLRPILV 312

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           G   K+P        +GG+   G+ G  IGP++ AL    W     A +
Sbjct: 313 GKDTKMPDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIFARADQ 361


>gi|77460421|ref|YP_349928.1| hypothetical protein Pfl01_4200 [Pseudomonas fluorescens Pf0-1]
 gi|77384424|gb|ABA75937.1| putative membrane protein [Pseudomonas fluorescens Pf0-1]
          Length = 346

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 83/326 (25%), Positives = 151/326 (46%), Gaps = 7/326 (2%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
            S + +  F++ +    ++ F SWP+            +  A++ T+  M L   PL++L
Sbjct: 19  ASFWVMAPFWSALFWGAVLAFASWPLMRLLTRWLNGRESLAALLLTMGWMLLVAGPLVWL 78

Query: 82  FYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSET 139
            +     +++  + +      G+P  P WL  +P  G     +W        +L +  + 
Sbjct: 79  GFNLADHVRDATAFIKDVQVDGLPEAPSWLGGVPLVGERLVGIWNSIDQQGAALMVTVKP 138

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
           +L   G   + R A + G   L+  LSI+F    +FFFYRDG  ++  + SL E L    
Sbjct: 139 YLGQVGNWLLARSA-QIGSGILELTLSIVF----VFFFYRDGPRLAAFVHSLLERLIGDR 193

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
                 +V   ++    G+   A  + ++    + +AGVP  + LG++T ++++IP G P
Sbjct: 194 AGYYIDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGVPGALVLGIVTFLLSLIPMGPP 253

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +   + +L  KG    A  L +WG   +  VD  L+P+L+     LP +    G+ GG
Sbjct: 254 LVWIPATAWLAWKGEYGMAVFLGIWGTFIISGVDNVLKPYLISRGGNLPLVIVLLGVFGG 313

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKES 345
           +   G +GLFIGP L+A+   +  + 
Sbjct: 314 LIAFGFIGLFIGPTLLAVAYSLLTDW 339


>gi|21958751|gb|AAM85497.1|AE013795_7 hypothetical protein y1931 [Yersinia pestis KIM 10]
 gi|45436849|gb|AAS62402.1| putative membrane protein [Yersinia pestis biovar Microtus str.
           91001]
          Length = 382

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 140/346 (40%), Gaps = 6/346 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             IM +I+ S + ++ F      A ++   +WP+            +   V+ T+ ++ L
Sbjct: 34  IFIMGMIIASFWVIQPFVMGFAWAGMVVIATWPLLIRLEKLLWGRRSLAVVVMTILLILL 93

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           F++P+  L    +     L+      +   +P   W+  IP  G      W   +S   +
Sbjct: 94  FVIPIALLVSSLVENSAPLIQWASSPSNLRMPNVDWMKSIPLIGDKLYSSWNTLISGGAN 153

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F ++     Y  G  ++  +    
Sbjct: 154 ALMAKVQPYIGATATWFVAQAAHVGYFLIHLALMVLFSVL----LYIHGEQVALGIRHFA 209

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                     +  +  K IR+  LG+ + A+ + ++ G    +AG+     L V+  I  
Sbjct: 210 MRAADKRGDAVVVMAAKAIRAVALGVVVTALVQAILGGIGLAIAGIQYATLLTVLMFICC 269

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +   G  +      I++   G+    T L +W  I +  +D  LRP+L+     +P +  
Sbjct: 270 VAQLGPLLVLVPAVIWVYWTGDTTWGTILLVWSCI-VGTLDNFLRPYLIRMEADMPMILI 328

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G++GG+ + G++GLFIGPV++A+   +    +    E +E ++ 
Sbjct: 329 LSGVIGGLLSFGMIGLFIGPVVLAISYRLISAWVHETPEPEESVTD 374


>gi|312796207|ref|YP_004029129.1| hypothetical protein RBRH_03616 [Burkholderia rhizoxinica HKI 454]
 gi|312167982|emb|CBW74985.1| Hypothetical membrane spanning protein [Burkholderia rhizoxinica
           HKI 454]
          Length = 414

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 73/354 (20%), Positives = 149/354 (42%), Gaps = 5/354 (1%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             Q   + ++  + L  ++ L  FF  +    I+     P+  +  ++    +   A+  
Sbjct: 33  RNQRGFQVLLYAVSLALVWILLPFFGAIFWGAILAILFQPLQRTLTARLGNRANLAALAT 92

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTK 125
               + + I+P+  +    + E+     ++        +   + +  +P   +A      
Sbjct: 93  LSLCVLVVILPVSLMIGTLVQEVSFAYEQIKTGQWNVTLYFQKAVGALPA--FAQHWLND 150

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                        T        F+   A   G   L + +    M+  +FF  RDG +IS
Sbjct: 151 VGLADMQSLQAKLTEGAARISQFVAAQAVEIGQNTLQFAVGFGIMLYMVFFLLRDGSAIS 210

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +++      L  ++ +K+      V+R+T  G   +A  +GL+ G  +++ G+   +  G
Sbjct: 211 RRIREAVP-LADSHKQKLLGKFTTVVRATVKGNIAVAAVQGLLGGLIFFILGISGSLLWG 269

Query: 246 VITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            + A+++++P  G+ + +   +IY L+ G ++ A  L L+ ++ +  VD  LRP LVG  
Sbjct: 270 TLMALLSLLPAIGSALVWGPAAIYFLLAGPLWKAVVLGLFCSLVIGGVDNILRPILVGKD 329

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            KLP        VGG+ T G+ G  IGP++ AL    W  S++  ++      S
Sbjct: 330 TKLPDWVVLISTVGGMATFGINGFVIGPLIAALFIACWDISVLIARDETHPSPS 383


>gi|227328036|ref|ZP_03832060.1| hypothetical protein PcarcW_12170 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 404

 Score =  233 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 73/351 (20%), Positives = 153/351 (43%), Gaps = 7/351 (1%)

Query: 14  WMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
            +I+FI+ ++ +  L  +++ +L A ++     P+ S    K  + +   +++  + +  
Sbjct: 12  ILILFIVTLAFFDILAPYYSAILWAAVLAIIFHPLKSKIRQKLNDRNGVASLLTVLIIFL 71

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
           L  +PL  +    ++E+  + +++  +N Q  + +   +  +P   WA     +H     
Sbjct: 72  LVFIPLGVIVSSLVVEINGVYTRLQDSNTQFPVVLAELIQHLP--KWARHFLAEHNLDNA 129

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +      + +   G  ++       G     + +    M+  LFF  +DG  +   +   
Sbjct: 130 AKIQQELSQVVLKGGQYLAGSVLLIGKGTFTFFIGFGVMLYLLFFLLKDGAYLVNLILE- 188

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L       +      V R+T  G  ++AI +G + G A+ +AG+   +  G + A +
Sbjct: 189 SLPLSTHVKHHLLVKFAAVSRATVKGTVVVAIVQGTLGGIAFSIAGIEGSLLWGSLMAFL 248

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           ++IP  G+ I +   +++L     ++ A  +  +  + + +VD  LRP LVG   K+P  
Sbjct: 249 SLIPAVGSAIIWVPAAVFLFATDMLWQAIFIVAFFVLVIGLVDNILRPLLVGKDTKMPDY 308

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE-SIMAIKENKEKISSNF 360
                 +GG+   G+ G  IGP++ AL    W   S    +EN E I  +F
Sbjct: 309 LILIATLGGMEIYGINGFVIGPLIAALFIACWNILSGRDNQENIEGIDEDF 359


>gi|262280291|ref|ZP_06058075.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258069|gb|EEY76803.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 372

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 98/357 (27%), Positives = 172/357 (48%), Gaps = 9/357 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIIL-VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE-S 58
           M     N Q ++ + + FI++ +    LK F  PVL A II + +WPIY        E  
Sbjct: 1   MHPYAPNLQRVLLFGLFFILIFLGFNILKYFIVPVLWAAIIAYMTWPIYLRIQRFFGETR 60

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIP-GG 116
           +T  A +    V+ +  +P     +    E + L   +      G + VP ++ D+P  G
Sbjct: 61  NTLNATLMISLVILVVGIPFTCAIFILQHEGRNLYFDLQRQVFSGHLSVPDFIRDLPFVG 120

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
              S    +  + P S       +++++       +            + + F + +LFF
Sbjct: 121 KEISRTLNELNNDPNSTIQNIAAWVQSH-----LSYGRVLLGEISKNIVKLGFAVFSLFF 175

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
           FYRDG  I  Q+    E +           + +  R+   G+ + AI +  + G +Y++A
Sbjct: 176 FYRDGQLILTQVSKALEMVIGPRIHHYLDTISETTRAVVYGVGLTAIAQAFLAGLSYFVA 235

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           GVP+ + L + T I+A+IP G PIS+  V ++L  +G    A  + +WG + +   D  +
Sbjct: 236 GVPNPMVLTIATFILALIPFGTPISYLGVGLWLFSQGQTMEAIGVIVWGILIVSSSDNVI 295

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           RP ++ G  K+PFL   FG++GG+ + GL+GLFIGPV++A++  IW+E +    E +
Sbjct: 296 RPLVISGATKIPFLLIMFGVLGGIASFGLVGLFIGPVILAILLAIWREWLHETIEPE 352


>gi|193078525|gb|ABO13539.2| putative membrane protein [Acinetobacter baumannii ATCC 17978]
          Length = 372

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 94/357 (26%), Positives = 172/357 (48%), Gaps = 9/357 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIIL-VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE-ES 58
           M       Q ++ + + FI++ +    LK F  PVL A II + +WPIY           
Sbjct: 1   MHPYAPTLQRVLLFGLFFILIFLGFNILKYFIVPVLWAAIIAYMTWPIYLRIQHFFGENR 60

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPG-G 116
           +   A +    V+ +  VP     +    E + L   +      G + VP ++ ++P  G
Sbjct: 61  NNLNATVMISLVILIVGVPFTCAIFILQHEGRNLYFDLQRQVFSGHLSVPDFIRNLPFIG 120

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
              S    +  + P S       +L+++       +            + + F I++LFF
Sbjct: 121 KEISRTLNEINTDPNSTIQNIAAWLQSH-----LSYGRVLLNEISKNIVKLCFAILSLFF 175

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
           FYRDG +I  Q+    E +           + +  R+   G+ + AI + ++ G +Y++A
Sbjct: 176 FYRDGHTILTQVSKALEMVIGPRIHHYLDTISETTRAVVYGVGLTAIAQAVLAGLSYFVA 235

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           GVP+ + L + T ++A+IP G P+S+  V ++L  +G    A  + LWG + +   D  +
Sbjct: 236 GVPNPMVLTIATFLLALIPFGTPVSYLGVGLWLFSQGQTMEAIGVILWGVLIVSSSDNVI 295

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           RP ++ G  ++PFL   FG++GG+ + GL+GLFIGPV++A++  IW+E +    + +
Sbjct: 296 RPLVISGATQIPFLLIMFGVLGGIASFGLVGLFIGPVILAVLLAIWREWLHETIDPE 352


>gi|104782634|ref|YP_609132.1| hypothetical protein PSEEN3611 [Pseudomonas entomophila L48]
 gi|95111621|emb|CAK16342.1| conserved hypothetical protein; putative membrane protein
           [Pseudomonas entomophila L48]
          Length = 350

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 83/333 (24%), Positives = 153/333 (45%), Gaps = 7/333 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + +  F + +L   I+ F SWP+            T  A + T   + L  +PL++L + 
Sbjct: 22  WVMAPFISALLWGAILAFASWPLMRLLTRLLGGRETLAASLLTTVWILLVALPLVWLGFN 81

Query: 85  GMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLK 142
               +++  + V      G+P  P W+  IP  G      W        +L   ++ +L 
Sbjct: 82  LADHIRDATAFVRDVQVDGLPDAPAWVGSIPFVGGRLVSWWESLDQQGAALLASAKPYLG 141

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
             G   + R A + G   L+  LS++F    +FFFYRDG  ++  +  L   L     + 
Sbjct: 142 QVGNWLLARSA-QIGSGVLELTLSLVF----VFFFYRDGPRLAAFVHRLLHRLVGERAEY 196

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
              +V   ++    G+   A  + L+    + +AGVP  + LG++T ++++IP G P+++
Sbjct: 197 YVDLVAGTVQRVVNGVIGTAAAQALLALIGFLIAGVPGAIVLGLVTFMLSLIPMGPPLAW 256

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              + +L+ KG+   A  L +WG   +  VD  L+P+L+     LP +    G+ GG+  
Sbjct: 257 IPATAWLVSKGDYGMAVFLGIWGTFVISGVDNVLKPYLISRGGNLPLVIVLLGVFGGLIA 316

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            G +GLFIGP L+A+   +  +      ++  +
Sbjct: 317 FGFIGLFIGPTLLAVGYSLLLDWSRNSAQHTPQ 349


>gi|110835489|ref|YP_694348.1| hypothetical protein ABO_2628 [Alcanivorax borkumensis SK2]
 gi|110648600|emb|CAL18076.1| membrane protein, putative [Alcanivorax borkumensis SK2]
          Length = 373

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 155/356 (43%), Gaps = 8/356 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           MR++ +  +   R  +  ++ VS  F   ++ FFAP+  A  I    +P++   +++   
Sbjct: 1   MRDSGILEKLEQRAFLFSLVAVSAVFALLIQPFFAPIFWACAISVIFYPLHKRLLARWPT 60

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
               +A+   +  + L ++P+L +    + E   L  KV       I +  ++  +    
Sbjct: 61  RRNLVALFTLMLCVVLVVIPVLAVATSFVTEGVGLFQKVQSGE---IDLASYVDKVKHAF 117

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
              +   +                 T    F+ + A   G     + L++  M+   FF 
Sbjct: 118 PGVQSLAERFDVDLEKIKEQAVKAFTGAGQFLAKRALAVGQNTFQFFLNLGLMLYLAFFL 177

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            RDG S+   L      L     + +     +V R+T  G  ++AI +G + G  +W  G
Sbjct: 178 IRDGDSMVAMLIRALP-LGDEREELLFAKFAEVTRATIKGNLLVAITQGALGGLIFWWLG 236

Query: 238 VPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           +P  +  GV+ A++++IP  GA + +  V++YL   G++  AT L L+G   + +VD  L
Sbjct: 237 IPGALLWGVVMAVLSLIPAVGAGLIWFPVALYLYAVGDMKEATVLILFGVFVIGLVDNIL 296

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           RP LVG   KLP     F  +GG+   G+ G  +GP+L AL    W   I    E 
Sbjct: 297 RPILVGRDTKLPDYVVLFSTLGGLAMFGITGFAVGPLLAALFVAFWGIFIREFNEE 352


>gi|253690490|ref|YP_003019680.1| hypothetical protein PC1_4130 [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251757068|gb|ACT15144.1| protein of unknown function UPF0118 [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 406

 Score =  232 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 72/351 (20%), Positives = 153/351 (43%), Gaps = 7/351 (1%)

Query: 14  WMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
            +I+F++ ++ +  L  +++ +L A ++     P+ S    K  + +   +++  + +  
Sbjct: 19  ILILFVVTLAFFDILAPYYSAILWAAVLAVIFHPLKSKIRQKLNDRNGVASLLTVLIIFL 78

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
           +  +PL  +    ++E+  + +++  +N Q  + +   L  +P   WA     +H     
Sbjct: 79  IVFIPLGVIVSSLVVEINGVYTRLQDSNTQFPVVLAELLQHLP--KWARHFLAEHNLDNA 136

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +      + +   G  ++       G     + +    M+  LFF  +DG  +   +   
Sbjct: 137 AKIQQELSQVALKGGQYLAGSVLLIGKGTFTFFIGFGVMLYLLFFLLKDGSYLVNLILE- 195

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L       +      V R+T  G  ++AI +G + G A+ +AG+   +  G + A +
Sbjct: 196 SLPLSTHVKHHLLVKFAAVSRATVKGTAVVAIVQGTLGGIAFSIAGIEGSLLWGSLMAFL 255

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           ++IP  G+ I +   +++L     ++ A  +  +  + + +VD  LRP LVG   K+P  
Sbjct: 256 SLIPAVGSAIIWVPAAVFLFATDMLWQAIFIVAFFVLVIGLVDNILRPLLVGKDTKMPDY 315

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE-SIMAIKENKEKISSNF 360
                 +GG+   G+ G  IGP++ AL    W   S    +EN E I  +F
Sbjct: 316 LILIATLGGMEIYGINGFVIGPLIAALFIACWNILSGRDNQENIEGIDEDF 366


>gi|169632288|ref|YP_001706024.1| hypothetical protein ABSDF0345 [Acinetobacter baumannii SDF]
 gi|169794531|ref|YP_001712324.1| hypothetical protein ABAYE0342 [Acinetobacter baumannii AYE]
 gi|184159661|ref|YP_001848000.1| permease [Acinetobacter baumannii ACICU]
 gi|213158897|ref|YP_002320895.1| hypothetical protein AB57_3597 [Acinetobacter baumannii AB0057]
 gi|215482119|ref|YP_002324301.1| hypothetical protein ABBFA_000368 [Acinetobacter baumannii
           AB307-0294]
 gi|239501916|ref|ZP_04661226.1| hypothetical protein AbauAB_06345 [Acinetobacter baumannii AB900]
 gi|260556965|ref|ZP_05829182.1| permease [Acinetobacter baumannii ATCC 19606]
 gi|294837967|ref|ZP_06782650.1| hypothetical protein A60131_08510 [Acinetobacter sp. 6013113]
 gi|294843277|ref|ZP_06787960.1| hypothetical protein A6014_15504 [Acinetobacter sp. 6014059]
 gi|294858709|ref|ZP_06796478.1| hypothetical protein A6013_08961 [Acinetobacter sp. 6013150]
 gi|301344848|ref|ZP_07225589.1| hypothetical protein AbauAB0_01365 [Acinetobacter baumannii AB056]
 gi|301513299|ref|ZP_07238536.1| hypothetical protein AbauAB05_17001 [Acinetobacter baumannii AB058]
 gi|301597602|ref|ZP_07242610.1| hypothetical protein AbauAB059_17343 [Acinetobacter baumannii
           AB059]
 gi|169147458|emb|CAM85319.1| conserved hypothetical protein; putative membrane protein
           [Acinetobacter baumannii AYE]
 gi|169151080|emb|CAO99739.1| conserved hypothetical protein; putative membrane protein
           [Acinetobacter baumannii]
 gi|183211255|gb|ACC58653.1| predicted permease [Acinetobacter baumannii ACICU]
 gi|213058057|gb|ACJ42959.1| hypothetical protein AB57_3597 [Acinetobacter baumannii AB0057]
 gi|213986092|gb|ACJ56391.1| conserved hypothetical protein [Acinetobacter baumannii AB307-0294]
 gi|260409571|gb|EEX02872.1| permease [Acinetobacter baumannii ATCC 19606]
 gi|322509572|gb|ADX05026.1| permease [Acinetobacter baumannii 1656-2]
 gi|323519592|gb|ADX93973.1| permease [Acinetobacter baumannii TCDC-AB0715]
          Length = 372

 Score =  232 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 93/357 (26%), Positives = 172/357 (48%), Gaps = 9/357 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIIL-VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE-ES 58
           M       Q ++ + + FI++ +    LK F  PVL A II + +WPIY           
Sbjct: 1   MHPYAPTLQRVLLFGLFFILIFLGFNILKYFIVPVLWAAIIAYMTWPIYLRIQHFFGENR 60

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPG-G 116
           +   A +    V+ +  VP     +    E + L   +      G + VP ++ ++P  G
Sbjct: 61  NNLNATVMISLVILIVGVPFTCAIFILQHEGRNLYFDLQRQVFSGHLSVPDFIRNLPFIG 120

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
              S    +  + P S       +++++       +            + + F I++LFF
Sbjct: 121 KEISRTLNEINTDPNSTIQNIAAWVQSH-----LSYGRVLLNEISKNIVKLCFAILSLFF 175

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
           FYRDG +I  Q+    E +           + +  R+   G+ + AI + ++ G +Y++A
Sbjct: 176 FYRDGHTILTQVSKALEMVIGPRIHHYLDTISETTRAVVYGVGLTAIAQAVLAGLSYFVA 235

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           GVP+ + L + T ++A+IP G P+S+  V ++L  +G    A  + LWG + +   D  +
Sbjct: 236 GVPNPMVLTIATFLLALIPFGTPVSYLGVGLWLFSQGQTMEAIGVILWGVLIVSSSDNVI 295

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           RP ++ G  ++PFL   FG++GG+ + GL+GLFIGPV++A++  IW+E +    + +
Sbjct: 296 RPLVISGATQIPFLLIMFGVLGGIASFGLVGLFIGPVILAVLLAIWREWLHETIDPE 352


>gi|50119081|ref|YP_048248.1| hypothetical protein ECA0120 [Pectobacterium atrosepticum SCRI1043]
 gi|49609607|emb|CAG73040.1| putative membrane protein [Pectobacterium atrosepticum SCRI1043]
          Length = 438

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 74/351 (21%), Positives = 154/351 (43%), Gaps = 7/351 (1%)

Query: 14  WMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
            +I+F++ ++ +  L  +++ +L A ++     P+ S    K  + +   +++  + +  
Sbjct: 51  ILILFVVTLAFFDILAPYYSAILWAAVLAIIFHPLKSKIRQKLNDRNGLASLLTVLIIFL 110

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
           +  +PL  +    ++E+  + +++  +N Q  + +      +P   WA    T+H     
Sbjct: 111 IVFIPLGIIVSSLVVEINGVYTRLQDSNTQFPVVLAELFQHLP--KWARHFLTEHNLDNA 168

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +      + +   G  ++       G     + +    M+  LFF  +DG  +   +   
Sbjct: 169 AKIQQELSQVALKGGQYLAGSVLLIGKGTFTFFIGFGVMLYLLFFLLKDGSYLVNLILE- 227

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L       +      V R+T  G  ++AI +G + G A+ +AG+   +  G + A +
Sbjct: 228 SLPLSTHVKHHLLVKFAAVSRATVKGTVVVAIVQGTLGGIAFSIAGIEGSLLWGSLMAFL 287

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           ++IP  G+ I +   +I+L     ++ A  +  +  + + +VD  LRP LVG   K+P  
Sbjct: 288 SLIPAVGSAIIWVPAAIFLFATDMLWQAIFIVAFFVLVIGVVDNILRPLLVGKDTKMPDY 347

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE-SIMAIKENKEKISSNF 360
                 +GG+   G+ G  IGP++ AL    W   S    +EN E IS +F
Sbjct: 348 LILIATLGGMEIYGINGFVIGPLIAALFIACWNILSGRDNQENIEGISEDF 398


>gi|260549903|ref|ZP_05824119.1| permease [Acinetobacter sp. RUH2624]
 gi|260407153|gb|EEX00630.1| permease [Acinetobacter sp. RUH2624]
          Length = 372

 Score =  232 bits (591), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 88/331 (26%), Positives = 162/331 (48%), Gaps = 8/331 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKE-ESSTFLAVIATVSVMCLFIVPLLFLFYY 84
            LK F  PV+ A II + +WPIY           +   A +    V+ +  VPL+   + 
Sbjct: 27  ILKYFIVPVVWAAIIAYMTWPIYLRIQRFFGENRNNLNATVMISFVILVVGVPLICAIFI 86

Query: 85  GMLEMKELVSKVVLANQHG-IPVPRWLSDIPG-GMWASELWTKHLSHPQSLKILSETFLK 142
              E + L   +      G + VP ++ ++P  G   +       + P S       +++
Sbjct: 87  LQHEGRNLYLDLQRQVFSGHLSVPDFIKNLPFIGKEITRTLNDINTDPNSTIQSIAAWIQ 146

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           ++       +            + + F I++LFFFYRDG +I  Q+    E +       
Sbjct: 147 SH-----LSYGRVLINEISKNLVKLGFAILSLFFFYRDGHTILTQVSKALEMVIGLRIHH 201

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
               + +  R+   G+ + AI + ++ G +Y++AGVP+ + L + T ++A+IP G P+S+
Sbjct: 202 YLDTISETTRAVVYGVGLTAIAQAVLAGLSYFVAGVPNPMVLTIATFLLALIPFGTPVSY 261

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             V ++L  +G    A  + LWG + +   D  +RP ++ G  ++PFL   FG++GG+ +
Sbjct: 262 LGVGLWLFSQGQTMEAIGVVLWGVLIVSSSDNVIRPLVISGATQIPFLLIMFGVLGGIAS 321

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            GL+GLFIGPV++A++  IW+E +    + +
Sbjct: 322 FGLVGLFIGPVILAVLLAIWREWLHETIDPE 352


>gi|330811059|ref|YP_004355521.1| hypothetical protein PSEBR_a4112 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379167|gb|AEA70517.1| Conserved hypothetical protein; putative membrane protein
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 345

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 86/326 (26%), Positives = 153/326 (46%), Gaps = 7/326 (2%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
            SL+ +  F++ +    ++ F SWP+            +  A + TV  M L  VPL++L
Sbjct: 19  ASLWVMAPFWSALFWGAVLAFASWPLMRLLTRWVNGRESLAAALLTVGWMLLVAVPLVWL 78

Query: 82  FYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSET 139
            +     +++  + +  A   G+P  P WL+ +P  G     +W        +L + +  
Sbjct: 79  GFNLADHVRDATAFIKDAQVDGLPEAPTWLAGVPLVGERLVGIWNSIDQQGAALMVSARP 138

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
           +L   G   + R A + G   L+  LSI+F    +FFFYRDG  ++  +  L E L    
Sbjct: 139 YLGQVGNWLLARSA-QIGGGILELTLSIVF----VFFFYRDGPRLAVFVHGLLERLIGDR 193

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
                 +V   ++    G+   A  + ++    + +AGVP  + LG++T ++++IP G P
Sbjct: 194 AGYYIELVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGVPGALVLGIVTFLLSLIPMGPP 253

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +   + +L  KG    A  L +WG   +  VD  L+P+L+     LP +    G+ GG
Sbjct: 254 LVWIPATAWLAWKGEYGMAVFLGIWGTFIISGVDNVLKPYLISRGGNLPLVIVLLGVFGG 313

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKES 345
           +   G +GLFIGP L+A+   +  + 
Sbjct: 314 LIAFGFIGLFIGPTLLAVAYSLLTDW 339


>gi|227114498|ref|ZP_03828154.1| hypothetical protein PcarbP_16133 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 389

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 74/351 (21%), Positives = 153/351 (43%), Gaps = 7/351 (1%)

Query: 14  WMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
            +I+FI+ ++ +  L  +++ +L A ++     P+ S    K  + +   +++  + +  
Sbjct: 12  ILILFIVTLAFFDILAPYYSAILWAAVLAIIFHPLKSKIRQKLNDRNGVASLLTVLIIFL 71

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
           L  +PL  +    ++E+  + +++  +N Q  + +   +  +P   WA     +H     
Sbjct: 72  LVFIPLGIIVSSLVVEINGVYTRLQDSNTQFPVVLAELIQHLP--RWARHFLAEHNLDNA 129

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +      + +   G  ++       G     + +    M+  LFF  +DG  +   +   
Sbjct: 130 AKIQQELSQVVLKGGQYLAGSVLLIGKGTFTFFIGFGVMLYLLFFLLKDGAYLVNLILE- 188

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L       +      V R+T  G  ++AI +G + G A+ +AG+   +  G + A +
Sbjct: 189 SLPLSTHVKHHLLVKFAAVSRATVKGTVVVAIVQGTLGGIAFSIAGIEGSLLWGSLMAFL 248

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           ++IP  G+ I +   +I+L     ++ A  +  +  + + +VD  LRP LVG   K+P  
Sbjct: 249 SLIPAVGSAIIWVPAAIFLFATDMLWQAIFIVAFFVLVIGLVDNILRPLLVGKDTKMPDY 308

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE-SIMAIKENKEKISSNF 360
                 +GG+   G+ G  IGP++ AL    W   S    +EN E I  +F
Sbjct: 309 LILIATLGGMEIYGINGFVIGPLIAALFIACWNILSGRDNQENIEGIDEDF 359


>gi|76818196|ref|YP_336095.1| PerM family permease [Burkholderia pseudomallei 1710b]
 gi|76582669|gb|ABA52143.1| Predicted permease PerM family [Burkholderia pseudomallei 1710b]
          Length = 374

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 65/353 (18%), Positives = 137/353 (38%), Gaps = 3/353 (0%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           ++  + Q     +++ + +   + L  FF  +    I+     P+     ++  +     
Sbjct: 24  DSGNDHQKFFHLLLLVVTVGLCWILTPFFGAIFWGTILAILFQPVQRWLAARFGKRRNLA 83

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A++    ++ + I+PL F+    + E+     ++     +     +             L
Sbjct: 84  ALVTLSLIILIVILPLAFVTATLVQEIAYAYQQIKTMQPNMTQYFQEFMHALPSSVHRVL 143

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               L+    ++             F+   A   G     + +S   M+  +FF  RDG 
Sbjct: 144 HNYGLTDIAGIQKKLTD-GAAAISQFVAAQALSIGQNTFQFVVSFGVMLYLVFFLLRDGG 202

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I +++      L   + + +      V+R+T  G   +A  +G + G  +W+ G+   +
Sbjct: 203 EIGRRVRRALP-LDEEHKQHLLTKFTTVVRATVKGNIAVAAVQGALGGLIFWILGIEGVI 261

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             G + A ++++P  GA + +   + Y  + G I+    L  +    + +VD  LRP LV
Sbjct: 262 LWGALMAFLSLLPAIGAGLVWVPAAGYFAVTGQIWKCVILVAFCVGVIGLVDNLLRPILV 321

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G   K+P        +GG+   G+ G  IGP++ AL    W       + + E
Sbjct: 322 GKDTKMPDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIFARTEQTDWE 374


>gi|304395632|ref|ZP_07377515.1| protein of unknown function UPF0118 [Pantoea sp. aB]
 gi|304356926|gb|EFM21290.1| protein of unknown function UPF0118 [Pantoea sp. aB]
          Length = 412

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 76/351 (21%), Positives = 144/351 (41%), Gaps = 7/351 (1%)

Query: 14  WMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
            +I+ I  V+ +  L  +F+ +L A I+     P+ +   ++  + +   A+I  + +  
Sbjct: 12  ILILAIATVAFFDVLSPYFSSILWAAILAVIFHPLKTWLRNRLGDRNGVAALITLLCICL 71

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVL-ANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
           +   PL  +    ++E   +  K+   ++Q  +     L  +P   WA     ++     
Sbjct: 72  IVFTPLAIIASSLVVETNAVYHKLQTNSSQFPVVFADLLQHLP--RWAKHFLAENNLDNA 129

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                  +     G  ++   A   G     + +    M+  LFF  +DG  +   +   
Sbjct: 130 GQIQQKLSSFALKGGQYVAGSAFIIGKGTFSFTVGFGIMLYLLFFLLKDGSYLVHLILEA 189

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L       +      V R+T  G  ++ I +G++ G A+W  G+   +  G + A +
Sbjct: 190 LP-LSTYVKHHLMVKFAAVARATVKGTVVVGIVQGILGGLAFWFTGIDGSLLWGALMAFL 248

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           ++IP  G+ I +   +I+    G ++    L  +  + + +VD  LRP LVG   K+P  
Sbjct: 249 SLIPAVGSAIIWVPAAIFFFATGALWKGLFLVGFFVVIVGLVDNILRPLLVGKDTKMPDY 308

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK-ESIMAIKENKEKISSNF 360
                 +GG+   G+ G  IGPV+ AL    W   S    +EN E I   F
Sbjct: 309 MILIATLGGMEIYGINGFVIGPVIAALFIACWNLLSGRDNRENIEAIDEEF 359


>gi|261823604|ref|YP_003261710.1| hypothetical protein Pecwa_4411 [Pectobacterium wasabiae WPP163]
 gi|261607617|gb|ACX90103.1| protein of unknown function UPF0118 [Pectobacterium wasabiae
           WPP163]
          Length = 389

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 73/355 (20%), Positives = 151/355 (42%), Gaps = 6/355 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G    ++  + L     L  +++ +L A ++     P+ S    K  + +   +++  +
Sbjct: 8   KGFFILILFAVTLAFFDILAPYYSAILWAAVLAIIFHPLKSKIRQKLNDRNGIASLLTVL 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHL 127
            +  +  +PL  +    ++E+  + +++  +N Q  + +   L  +P   WA    T+H 
Sbjct: 68  IIFLIVFIPLGIIVSSLVVEINGVYTRLQDSNTQFPVVLAELLQHLP--KWARHFLTEHN 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +      + +   G  ++       G     + +    M+  LFF  +DG  +   
Sbjct: 126 LDNAAKIQQELSQVALKGGQYLAGSVLLIGKGTFTFFIGFGVMLYLLFFLLKDGSYLVNL 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L       +      V R+T  G  ++AI +G + G A+ +AG+   +  G +
Sbjct: 186 ILE-SLPLSTHVKHHLLVKFAAVSRATVKGTAVVAIVQGTLGGIAFSIAGIEGSLLWGSL 244

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A +++IP  G+ I +   +++L     ++ A  +  +  + + +VD  LRP LVG   K
Sbjct: 245 MAFLSLIPAVGSAIIWVPAAVFLFATDMLWQAIFIVAFFVLVIGLVDNILRPLLVGKDTK 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE-SIMAIKENKEKISSNF 360
           +P        +GG+   G+ G  IGP++ AL    W   S    +EN E I  +F
Sbjct: 305 MPDYLILIATLGGMEIYGINGFVIGPLIAALFIACWNILSGRDNQENIEGIDEDF 359


>gi|114327071|ref|YP_744228.1| hypothetical protein GbCGDNIH1_0407 [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315245|gb|ABI61305.1| hypothetical membrane spanning protein [Granulibacter bethesdensis
           CGDNIH1]
          Length = 391

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 100/349 (28%), Positives = 170/349 (48%), Gaps = 5/349 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI-SKKEESSTFLAVIA 66
            +     + + I   +L+ L  F   +  A +    +WP+Y     +        L ++ 
Sbjct: 39  QKIAFCVLALIITAGALWTLGSFMPALAWAAVFAIATWPLYRRARNAWPGGGRVLLPLLF 98

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           TV+V  LF+ PL         + + ++  V     +G+PVP  LS +P G    E W  +
Sbjct: 99  TVAVTLLFLGPLTLAGIEVANDARGVIDGVEHVLHNGLPVPSALSSLPFGSPVVEWWQDN 158

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           L   +    L+    ++     +   +     +     +   FM++ LFF YRDG +++ 
Sbjct: 159 LGSGEGAARLARHIDRSQ----LVAISRHLSAVLAHRVVLFSFMLVTLFFLYRDGDTLTA 214

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           QL       F  +  ++ R V   I  T  G+ ++ + EG+++G  Y +AGVP     G 
Sbjct: 215 QLSRASARAFGPHGARVGRQVIASIHGTVDGLVLVGLAEGILIGIGYAIAGVPHPTLFGA 274

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +TAI AMIP GAP +F   ++ L   G + +A  +  +G + +FI D  +RPFL+GG  +
Sbjct: 275 VTAIAAMIPFGAPAAFLLAALLLAANGALLSAAIIAGYGCLIVFIADHFVRPFLIGGATR 334

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           LPF+    G++GGV   GL GLF+GP LMA +  +W+E   A  +N+++
Sbjct: 335 LPFILVLLGILGGVECWGLFGLFLGPALMAAVTHLWREFSAAGPDNRDR 383


>gi|170722651|ref|YP_001750339.1| hypothetical protein PputW619_3487 [Pseudomonas putida W619]
 gi|169760654|gb|ACA73970.1| protein of unknown function UPF0118 [Pseudomonas putida W619]
          Length = 354

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 83/336 (24%), Positives = 152/336 (45%), Gaps = 7/336 (2%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
            +L+ +  F + +L   I+ F SWP+            T  A + T + + +  +PL++L
Sbjct: 23  AALWVMAPFISALLWGAILAFASWPLMRLLTRALGGRETLAAGLLTSAWILIVALPLVWL 82

Query: 82  FYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSET 139
            +     +++  + V      G+P  P WL  IP  G      W        +L    + 
Sbjct: 83  GFNLADHVRDATAFVRDVQVDGLPDAPAWLGGIPLVGERLVSGWQSLDQQGAALIASVKP 142

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            L   G   + R A + G   L+  LS++F    +FFFYRDG  ++  +  L   L    
Sbjct: 143 HLGQVGNWLLARSA-QIGSGVLELTLSLVF----VFFFYRDGPRLAAFVLRLLNRLVGER 197

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            +    +V   ++    G+   A  + L+    + +AGVP  + LG++T ++++IP G P
Sbjct: 198 AEYYLELVAGTVQRVVNGVIGTAAAQALLALIGFLIAGVPGAIVLGLVTFMLSLIPMGPP 257

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           +++   + +L+ +G    A  L +WG   +  VD  L+P+L+     LP +    G+ GG
Sbjct: 258 LAWIPATAWLVWQGEYGMAVFLGIWGTFVISGVDNVLKPYLISRGGNLPLVIVLLGVFGG 317

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +   G +GLFIGP L+A+   +  +      +   +
Sbjct: 318 LIAFGFIGLFIGPTLLAVGYSLLLDWSRNAGQPTPQ 353


>gi|148654006|ref|YP_001281099.1| hypothetical protein PsycPRwf_2209 [Psychrobacter sp. PRwf-1]
 gi|148573090|gb|ABQ95149.1| protein of unknown function UPF0118 [Psychrobacter sp. PRwf-1]
          Length = 409

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 89/349 (25%), Positives = 178/349 (51%), Gaps = 7/349 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           ++  + +   +++ + ++    ++ F  P L A I+ + ++PIY+ F  K + S    A 
Sbjct: 9   LVTQRVLTATLLVILFILCFRVVQFFIVPALWAAILAYVTFPIYNFFHKKVKLSPNISAG 68

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPG-GMWASEL 122
           I TVS+  +  VP++   +    E   L S ++   + G + VP+ + ++P  G    ++
Sbjct: 69  IMTVSISLMLGVPIVLGLFVLQQEAVNLYSNLLYRIKVGYVDVPQEIKNLPVIGQQIKDI 128

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             +    P++       +L+++   +  + A       +     +   ++ +FFFYRDG 
Sbjct: 129 LWEINKDPEASLSAFRAWLQSHL--YYGKVALDVAFSTM---AKLGMALMTIFFFYRDGI 183

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           S+ +Q+     ++           V    ++   G+ + A+ + L+ G  Y+ AG PS +
Sbjct: 184 SLIKQIRQALRNIIGNRIDDYLDSVGSTTQAVVYGIGLTALAQALLAGVGYYFAGAPSPI 243

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L ++T ++A++P G P ++  VSI+LL +G+   A  L LWG + +  VD  +RP ++ 
Sbjct: 244 LLTLMTFVVALVPFGTPFAWMGVSIWLLTQGHTPEAIGLALWGMLVISWVDNLIRPIVIS 303

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           G  K+PF+  F G++GG+   G +GLFIGPV++A+   +W+E I   + 
Sbjct: 304 GATKIPFIIIFIGVLGGLTAFGFVGLFIGPVVLAIALAVWREWINQHRN 352


>gi|206563261|ref|YP_002234024.1| hypothetical protein BCAM1409 [Burkholderia cenocepacia J2315]
 gi|198039301|emb|CAR55266.1| putative membrane protein [Burkholderia cenocepacia J2315]
          Length = 356

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 94/326 (28%), Positives = 160/326 (49%), Gaps = 7/326 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+   F       +  T +A + T ++  L ++P+    
Sbjct: 35  WVIRDFIPAIAWACVIAIAMWPLLKRFESHRLFRDRPTLIATVITAAISLLVVLPVAVAT 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-MWASELWTKHLSHPQSLKILSETFL 141
              + +  +L   +     +GIP+P  +S +P G    +E W  +L HP    + + T +
Sbjct: 95  TQAIAQAHDLREWLHTVQDNGIPLPDVVSRLPYGAAQITEWWQANLGHP----LHAATAM 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                +    F  +FG       L   FM++ LF   R G  +S  L       F     
Sbjct: 151 HGVNSEKFIAFGRQFGTKLAHVLLEFGFMLVTLFVILRAGHKLSGALLQGARRAFGRNGA 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           ++   +   +  T  G+ ++ +GEG +LG AY LAGVP    LG++TA+ AM+P  AP+ 
Sbjct: 211 ELIERMVAAVYGTVTGLVVVGLGEGALLGVAYALAGVPHAALLGLVTAVAAMLPFCAPVV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G    A  +   G I +F+ +  +RP L+GG  +LPFL   FG++GG  
Sbjct: 271 FCGAALWLFVQGATMWAVVVAALGFIVVFVAEHFVRPVLIGGSTRLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIM 347
           T GL+GLF+GP LM ++ ++W E I 
Sbjct: 331 TFGLIGLFVGPALMTVLTMLWAEWIA 356


>gi|50086276|ref|YP_047786.1| hypothetical protein ACIAD3289 [Acinetobacter sp. ADP1]
 gi|49532252|emb|CAG69964.1| conserved hypothetical protein; putative membrane protein
           [Acinetobacter sp. ADP1]
          Length = 370

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 84/336 (25%), Positives = 169/336 (50%), Gaps = 8/336 (2%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKE-ESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           K F  PV+ A II + +WPIY               A +    ++ +  +PL F  +   
Sbjct: 29  KYFIVPVVWAAIIAYMTWPIYIGIQRFCGENRPNLSATLMISLIILVIGIPLTFAVFMLQ 88

Query: 87  LEMKELVSKVVLANQHG-IPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLKTN 144
            E + L  ++      G +  P ++ ++P  G   + +  +  ++P +L      +++++
Sbjct: 89  HEGRNLFIELQQQIFSGHLSAPDFIRELPLVGNEITRILNEINTNPSNLTQNLSLWIQSH 148

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
                  +            + + F +++LFFFYRDG +I  Q+    E +         
Sbjct: 149 -----MGYGRFVLSEISKNLVKLCFALLSLFFFYRDGHTILNQVSKALEMVIGPRIHHYM 203

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
             + +  R+   G+ + A+ + ++ G +Y++AGVP+ + L ++T ++A+IP G P+++T+
Sbjct: 204 DTISETTRAVVYGVGLTAVAQAILAGLSYFVAGVPNPMVLTIVTFLLALIPFGTPLAYTS 263

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           V+++L  +G +  A  + LWG   +   D  +RP ++ G  ++PFL   FG++GG+ + G
Sbjct: 264 VALWLFSQGQMMGAIGVMLWGVCIVSTSDNVIRPLVISGATQIPFLLIMFGVLGGLASFG 323

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           L+GLFIGPV++A++  IW+E +    E +    +  
Sbjct: 324 LVGLFIGPVILAILLAIWREWLHENIEPEPVPKATL 359


>gi|238757756|ref|ZP_04618939.1| hypothetical protein yaldo0001_35130 [Yersinia aldovae ATCC 35236]
 gi|238703999|gb|EEP96533.1| hypothetical protein yaldo0001_35130 [Yersinia aldovae ATCC 35236]
          Length = 367

 Score =  229 bits (584), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 72/358 (20%), Positives = 143/358 (39%), Gaps = 6/358 (1%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R T L         IM +I+ S + ++ F      A ++   +WP+   F          
Sbjct: 7   RRTDLPKLMFGVIFIMIMIVSSFWVVQPFIMGFAWAGMVVIATWPLLIRFEKLLWGKRWL 66

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWAS 120
            A++ T+ ++ LF++P+  L    +     +++     ++   P   WL  IP  G    
Sbjct: 67  AAIVMTMLLILLFVIPIALLVSSLVENSGPVIAWASSPSKLHFPEMNWLQSIPMIGSKLY 126

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   ++   +  +            ++   A+  G   +   L ++F  +  F     
Sbjct: 127 SSWHTLVAGGGNALLAKVQPYVGATATWLVAQAAHVGYFVIHLALMVLFSTLLYF----H 182

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +   +              +  +  K IR+  LG+ + A+ + ++ G    +AG+  
Sbjct: 183 GEQVGLGIRHFAVRAADKRGDAVVVLAAKAIRAVALGVVVTALVQAVLGGIGLAIAGIQY 242

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  I  +   G  +      I+L   G+    T L +W  I +  +D  LRP+L
Sbjct: 243 ATLLTVLMFICCVAQLGPLLILVPAVIWLYWTGDTTWGTVLLVWSCI-VGTMDNVLRPYL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +     +P +    G++GG+ + G++GLFIGPV++A+   +    +    E +E I  
Sbjct: 302 IRMEADMPMILILSGVIGGLLSFGMIGLFIGPVVLAISYRLTSAWVNEAPEPEESIKD 359


>gi|26988931|ref|NP_744356.1| hypothetical protein PP_2207 [Pseudomonas putida KT2440]
 gi|24983744|gb|AAN67820.1|AE016413_2 membrane protein, putative [Pseudomonas putida KT2440]
          Length = 354

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 77/343 (22%), Positives = 151/343 (44%), Gaps = 4/343 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M ET L  + +   ++  + +   + L  ++  +  A+I+G    P+    + +      
Sbjct: 1   MNETALQNKALA-VLLALVTIAFFWILLPYYGAIFWAVILGILFAPLQRHLLIRCGRRRN 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A  +T+  + + I+P++ +    + E   L  ++               D+       
Sbjct: 60  LAAATSTLVCLLVAILPVIIISALLVQEGATLYQRIESGQLDIAGYVERGKDMLPAFAQR 119

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L    + +   L+     +  T G   +   A  FG    ++ +S   M+  LFFF RD
Sbjct: 120 GLDNMGMGNLDGLRDKITKW-ATQGSQVLASQAFSFGQGTFEFLISFGIMMYLLFFFLRD 178

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +++++  +   L     +++     +V+R+T  G  ++AI +G + G  +W+  +PS
Sbjct: 179 GPEVARRVR-MAVPLPEHQKRRLQLKFNRVVRATVKGNVLVAITQGALGGFIFWVLDIPS 237

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +   V+ A ++++P  GA I +  V+ Y L+ G I     L  +G + + +VD  LRP 
Sbjct: 238 ALVWAVLMAFLSLLPAVGAGIIWAPVAAYFLLTGAILQGVVLTAFGVLVIGLVDNVLRPI 297

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           LVG   ++P        +GG+   GL G  IGP++ AL    W
Sbjct: 298 LVGKDTRMPDYLILVSTLGGLAVFGLNGFVIGPLIAALFVSSW 340


>gi|297183286|gb|ADI19424.1| predicted permease [uncultured Pseudomonadales bacterium
           HF0500_12O04]
          Length = 349

 Score =  228 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 86/350 (24%), Positives = 163/350 (46%), Gaps = 7/350 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + N + +++ +++ +   SL+ +  F++ +    ++ F SWP+            +  A 
Sbjct: 2   LNNDRLLVQILLLVLFGASLWVMAPFWSALFWGAVLAFASWPLMRLLTRVLGGRESLAAS 61

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASEL 122
           I T+  M L   PL++L       +++  + V      G+P  P WL+ +P  G     +
Sbjct: 62  ILTLGWMLLVAGPLVWLGLNLADHVRDATTFVKDVQLEGLPEAPAWLAGLPLVGERLVGI 121

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           W        ++ +  + +L   G   + R A + G   L+  LSI+F    +FFFYRDG 
Sbjct: 122 WNTIDEQGAAMLVAIKPYLGQVGNWLLARSA-QIGSGILELTLSIVF----VFFFYRDGP 176

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            ++  +  L E L          +V   ++    G+   A  + L+    + +AGVP  +
Sbjct: 177 RLATFVHGLLERLIGERADYYQELVAGTVQRVVNGVIGTAAAQALLALIGFLIAGVPGAL 236

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            LG+ T ++++IP G P+ +   + +L  KG+   A  L +WG + +  VD  L+P+L+ 
Sbjct: 237 VLGLATFLLSLIPMGPPLIWVPATAWLAWKGDYGMAIFLGIWGTLIISGVDNVLKPYLIS 296

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
               LP +    G+ GG+   G +GLFIGP L+A+   +  +   + +  
Sbjct: 297 RGGNLPLVIVLLGVFGGLIAFGFIGLFIGPTLLAIAYSLLVDWSASQQNR 346


>gi|254253952|ref|ZP_04947269.1| hypothetical protein BDAG_03238 [Burkholderia dolosa AUO158]
 gi|124898597|gb|EAY70440.1| hypothetical protein BDAG_03238 [Burkholderia dolosa AUO158]
          Length = 356

 Score =  228 bits (583), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 100/346 (28%), Positives = 171/346 (49%), Gaps = 8/346 (2%)

Query: 6   LNPQGIMRWMI-MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK--KEESSTFL 62
              Q I R M+    +L++L+ ++ F   +  A +I    WP+   F S     +  T +
Sbjct: 15  PRAQQIARAMLYTAFLLLALWVIRDFIPAIAWACVISIAMWPLLERFESHPLFRDRPTLI 74

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM-WASE 121
           A + T  +  L I+P+   F   + +  ++   +     +GIP+P  +  +P G    +E
Sbjct: 75  ATVITTGISLLVILPVAAGFTEAVAQAHDVRMWLHTIQDNGIPLPDVVGRLPYGAAQITE 134

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            W  +L HP    + + T +     +    F  +FG       L   FM++ LF   R G
Sbjct: 135 WWQANLGHP----LHAATAMHGVNGEKFIAFGRQFGTKLAHALLEFGFMLVTLFVILRAG 190

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +S  L       F A   ++   +   +  T  G+ ++ +GEG +LG AY  AGVP  
Sbjct: 191 HKLSGALLHGARRAFGASGAELIDRMVDAVYGTVTGLVVVGLGEGALLGVAYAFAGVPHA 250

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             LG++TA+ AM+P  API F   +++L + G   +A  +  +G + +F+ +  +RP L+
Sbjct: 251 ALLGLVTAVAAMLPFCAPIVFCGAALWLFVHGATVSAVGVAAFGFVVVFVAEHFVRPVLI 310

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           GG  +LPFL   FG++GG  T GL+GLF+GP LM ++ ++W E + 
Sbjct: 311 GGSTRLPFLLVLFGILGGAETFGLIGLFVGPALMTVLTMLWAEWVA 356


>gi|254248509|ref|ZP_04941829.1| hypothetical protein BCPG_03340 [Burkholderia cenocepacia PC184]
 gi|124875010|gb|EAY65000.1| hypothetical protein BCPG_03340 [Burkholderia cenocepacia PC184]
          Length = 356

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 95/326 (29%), Positives = 158/326 (48%), Gaps = 7/326 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+   F          T +A + T S+  L ++P+    
Sbjct: 35  WVIRDFIPAIAWACVIAIAMWPLLKRFESHRLFRNRPTLIATVITTSISLLVVLPVAVAT 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-MWASELWTKHLSHPQSLKILSETFL 141
                +  +L   +     +GIP+P  +S +P G    +E W  +L HP    + + T +
Sbjct: 95  TQAFAQAHDLREWLHTIQDNGIPLPDVVSRLPYGAAQITEWWQANLGHP----LHAATAM 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                +    F  +FG       L   FM++ LF   R G  +S  L       F     
Sbjct: 151 HGVNGEKFIAFGRQFGTKLAHVLLEFGFMLVTLFVILRAGHKLSGALLQGARRAFGRNGA 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           ++   +   +  T  G+ ++ +GEG +LG AY LAGVP    LG++TA+ AM+P  AP+ 
Sbjct: 211 ELIERMVAAVYGTVTGLVVVGLGEGALLGVAYALAGVPHAALLGLVTAVAAMLPFCAPVV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G    A  +   G I +F+ +  +RP L+GG  +LPFL   FG++GG  
Sbjct: 271 FCGAALWLFVQGATMWAVVVAALGFIVVFVAEHFVRPVLIGGSTRLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIM 347
           T GL+GLF+GP LM ++ ++W E I 
Sbjct: 331 TFGLIGLFVGPALMTVLTMLWAEWIA 356


>gi|53722867|ref|YP_111852.1| hypothetical protein BPSS1848 [Burkholderia pseudomallei K96243]
 gi|52213281|emb|CAH39324.1| putative membrane protein [Burkholderia pseudomallei K96243]
          Length = 364

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 65/353 (18%), Positives = 137/353 (38%), Gaps = 3/353 (0%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           ++  + Q     +++ + +   + L  FF  +    I+     P+     ++  +     
Sbjct: 14  DSGNDHQKFFHLLLLVVTVGLCWILTPFFGAIFWGTILAILFQPVQRWLAARFGKRRNLA 73

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A++    ++ + I+PL F+    + E+     ++     +     +             L
Sbjct: 74  ALVTLSLIILIVILPLAFVTATLVQEIAYAYQQIKTMQPNMTQYFQEFMHALPSSVHRVL 133

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               L+    ++             F+   A   G     + +S   M+  +FF  RDG 
Sbjct: 134 HNYGLTDIAGIQKKLTD-GAAAISQFVAAQALSIGQNTFQFVVSFGVMLYLVFFLLRDGG 192

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I +++      L   + + +      V+R+T  G   +A  +G + G  +W+ G+   +
Sbjct: 193 EIGRRVRRALP-LDEEHKQHLLTKFTTVVRATVKGNIAVAAVQGALGGLIFWILGIEGVI 251

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             G + A ++++P  GA + +   + Y  + G I+    L  +    + +VD  LRP LV
Sbjct: 252 LWGALMAFLSLLPAIGAGLVWVPAAGYFAVTGQIWKCVILVAFCVGVIGLVDNLLRPILV 311

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G   K+P        +GG+   G+ G  IGP++ AL    W       + + E
Sbjct: 312 GKDTKMPDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIFARTEQTDWE 364


>gi|148548739|ref|YP_001268841.1| hypothetical protein Pput_3531 [Pseudomonas putida F1]
 gi|148512797|gb|ABQ79657.1| protein of unknown function UPF0118 [Pseudomonas putida F1]
          Length = 354

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 77/343 (22%), Positives = 150/343 (43%), Gaps = 4/343 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M ET L  + +   ++  + +   + L  ++  +  A+I+G    P+    + +      
Sbjct: 1   MNETALQNKALA-VLLALVTIAFFWILLPYYGAIFWAVILGILFAPLQRHLLIRCGRRRN 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A  +T+  + + I+P++      + E   L  ++               D+       
Sbjct: 60  LAAATSTLVCLLVAILPVIITSALLVQEGATLYQRIESGQLDIAGYVERGKDMLPAFAQR 119

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L    + +   L+     +  T G   +   A  FG    ++ +S   M+  LFFF RD
Sbjct: 120 GLDNMGMGNLDGLRDKIAKW-ATQGSQVLASQAFSFGQGTFEFLISFGIMMYLLFFFLRD 178

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +++++  +   L     +++     +V+R+T  G  ++AI +G + G  +W+  +PS
Sbjct: 179 GPEVARRV-RMAVPLPEHQKRRLQLKFNRVVRATVKGNVLVAITQGALGGFIFWVLDIPS 237

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +   V+ A ++++P  GA I +  V+ Y L+ G I     L  +G + + +VD  LRP 
Sbjct: 238 ALVWAVLMAFLSLLPAVGAGIIWAPVAAYFLLTGAILPGVVLTAFGVLVIGLVDNVLRPI 297

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           LVG   ++P        +GG+   GL G  IGP++ AL    W
Sbjct: 298 LVGKDTRMPDYLILVSTLGGLAVFGLNGFVIGPLIAALFVSSW 340


>gi|49086714|gb|AAT51373.1| PA2651 [synthetic construct]
          Length = 353

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 72/331 (21%), Positives = 136/331 (41%), Gaps = 5/331 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + L  F+  V    I+     P+      +  +     A+I  +  + + I+P++F+   
Sbjct: 24  WLLLPFYGAVFWGTILAIIFAPVQRRLQVRLRDRKNLAALITLLICVLIVIIPVIFIAGS 83

Query: 85  GMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
            + E   +  +V          + + ++ +P      +   +      S      + +  
Sbjct: 84  LVQEGASVYQRVKSGELNFAAYLQQAVAALPPS--VHQWLERFDLANLSSLQEKLSSVAM 141

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
                +   A   G   LD+ +S   M+  LFF  RDG  + +++      L   +   +
Sbjct: 142 QASQVVATKAFSIGQNTLDFVISFGIMLYLLFFLLRDGRVLGRRIKQAVP-LSQEHKHHL 200

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISF 262
                 VIR+T  G   +A  +G + G  +WL G+   +  G + A ++++P  GA + +
Sbjct: 201 FAKFTTVIRATVKGNIAVAATQGALGGLIFWLPGIEGALLWGTLMAFLSLLPAIGAALIW 260

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             V+ Y L+ G I+    L L+  + + +VD  LRP LVG   K+P        +GG+  
Sbjct: 261 APVAAYFLLTGAIWQGVVLILFCVVVIGLVDNILRPILVGKDTKMPDYVVLISTLGGMAL 320

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            GL G  IGP++ AL    W       +E +
Sbjct: 321 FGLNGFVIGPLIAALFMASWDLFTGREEEPQ 351


>gi|116050638|ref|YP_790543.1| hypothetical protein PA14_29820 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296388888|ref|ZP_06878363.1| hypothetical protein PaerPAb_12095 [Pseudomonas aeruginosa PAb1]
 gi|313107690|ref|ZP_07793872.1| putative exported protein [Pseudomonas aeruginosa 39016]
 gi|115585859|gb|ABJ11874.1| putative exported protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310880374|gb|EFQ38968.1| putative exported protein [Pseudomonas aeruginosa 39016]
          Length = 352

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 71/331 (21%), Positives = 136/331 (41%), Gaps = 5/331 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + L  F+  V    I+     P+      +  +     A+I  +  + + I+P++F+   
Sbjct: 24  WLLLPFYGAVFWGTILAIIFAPVQRRLQVRLRDRKNLAALITLLICVLIVIIPVIFIAGS 83

Query: 85  GMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
            + E   +  +V          + + ++ +P      +   +      S      + +  
Sbjct: 84  LVQEGASVYQRVKSGELNFAAYLQQAVAALPPS--VHQWLERFDLANLSSLQEKLSSVAM 141

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
                +   A   G   LD+ +S   M+  LFF  RDG  + +++      L   +   +
Sbjct: 142 QASQVVATKAFSIGQNTLDFVISFGIMLYLLFFLLRDGRVLGRRIKQAVP-LSQEHKHHL 200

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISF 262
                 VIR+T  G   +A  +G + G  +W+ G+   +  G + A ++++P  GA + +
Sbjct: 201 FAKFTTVIRATVKGNIAVAATQGALGGLIFWVLGIEGALLWGTLMAFLSLLPAIGAALIW 260

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             V+ Y L+ G I+    L L+  + + +VD  LRP LVG   K+P        +GG+  
Sbjct: 261 APVAAYFLLTGAIWQGVVLILFCVVVIGLVDNILRPILVGKDTKMPDYVVLISTLGGMAL 320

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            GL G  IGP++ AL    W       +E +
Sbjct: 321 FGLNGFVIGPLIAALFMASWDLFTGREEEPQ 351


>gi|237749388|ref|ZP_04579868.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229380750|gb|EEO30841.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 367

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 72/335 (21%), Positives = 142/335 (42%), Gaps = 4/335 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +  + ++ + L     L  F+  +    ++     P+   F+ K        A++    
Sbjct: 9   KVFLFFLLIVTLAFFSILLPFYGGIFWGFVLAILFMPLNDFFLRKMPAKKNLAALLTLAI 68

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            + + I+PL+ +    + E   L  K+             ++S +P   WA ++      
Sbjct: 69  CLLIVIIPLIVVAGSLVEESSVLYQKILNQKIDSDASFHHFISQLP--DWAVDVLNHFGI 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +      T L      ++       G   LD+ +    M+  LFF  RDG  ++ ++
Sbjct: 127 STFAELQKEATRLILVTGQYLGSRVFIIGQNVLDFTVGFFVMLYLLFFLLRDGHDLADKI 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S    L      ++      VIR+T  G  ++A+ +G + G  +W  G+ + +  G I 
Sbjct: 187 RSKIP-LADNQKTRLLTKFMGVIRATVKGNLVVALVQGGLGGLIFWFLGIEAALLWGAIM 245

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++++++P G+ + +  V+IY L+ G+I     L  +G + + ++D  LRP LVG   ++P
Sbjct: 246 SVLSLLPAGSGVVWAPVAIYFLLTGSILKGVILLAFGILVIGLIDNFLRPLLVGKDTQMP 305

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                   +GG+   GL G  IGP++ AL    W 
Sbjct: 306 DYLVLISTIGGMALFGLNGFIIGPMIAALFLTAWD 340


>gi|330821282|ref|YP_004350144.1| hypothetical protein bgla_2g21980 [Burkholderia gladioli BSR3]
 gi|327373277|gb|AEA64632.1| hypothetical protein bgla_2g21980 [Burkholderia gladioli BSR3]
          Length = 350

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 69/350 (19%), Positives = 140/350 (40%), Gaps = 3/350 (0%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E+  + Q     ++  + +   + L  FF  +    I+     P+   F +   +     
Sbjct: 2   ESGKDHQKFFHLLLAIVTIGFCWILLPFFGAIFWGTILAILFQPVQRWFAAHFGKRRNLA 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A++    ++ + I+PL F+    + E+     ++  A  +     + +           L
Sbjct: 62  ALVTLSLIVLIVILPLSFVAGTLVQEIAFAYQQIKAAQPNMTGWLQEIVHALPASLQRIL 121

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            +  L+    ++             F+   A   G     + +S   M+  +FF  RDG 
Sbjct: 122 HSYGLTDIAGIQKKLTD-GAAAISQFVAAQAFSIGQNTFQFIVSFGIMLYLVFFLLRDGG 180

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I +++      L   + + +      V+R+T  G   +AI +G + G  +W+ G+   +
Sbjct: 181 EIGRRVRRALP-LDEDHKQLLLTKFTTVVRATVKGNIAVAIVQGALGGLIFWILGIEGVL 239

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             G + A ++++P  GA + +   ++Y  + G I+    L  +    + +VD  LRP LV
Sbjct: 240 LWGALMAFLSLLPAIGAGLVWAPAAVYFAVTGQIWKCVILVAFCVGVIGLVDNLLRPILV 299

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           G   K+P        +GG+   G+ G  IGP++ AL    W     A + 
Sbjct: 300 GKDTKMPDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIFARADQN 349


>gi|83718340|ref|YP_438729.1| hypothetical protein BTH_II0529 [Burkholderia thailandensis E264]
 gi|167577075|ref|ZP_02369949.1| hypothetical protein BthaT_02997 [Burkholderia thailandensis TXDOH]
 gi|167615244|ref|ZP_02383879.1| hypothetical protein BthaB_03087 [Burkholderia thailandensis Bt4]
 gi|257141807|ref|ZP_05590069.1| hypothetical protein BthaA_21719 [Burkholderia thailandensis E264]
 gi|83652165|gb|ABC36229.1| membrane protein, putative [Burkholderia thailandensis E264]
          Length = 352

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 64/353 (18%), Positives = 137/353 (38%), Gaps = 3/353 (0%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           ++  + Q     +++ + +   + L  FF  +    I+     P+     ++  +     
Sbjct: 2   DSGNDHQKFFHLLLLVVTVGLCWILTPFFGAIFWGTILAILFQPVQRWLAARLGKRRNLA 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A++    ++ + I+PL F+    + E+     ++     +     +             L
Sbjct: 62  ALVTLTLIILIVILPLAFVTATLVQEIAYAYQQIKTMQPNMTQYFQEFMHALPTSVHRVL 121

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               L+    ++             F+   A   G     + +S   M+  +FF  RDG 
Sbjct: 122 HNYGLTDIAGIQKKLTD-GAAAISQFVAAQALSIGQNTFQFVVSFGVMLYLVFFLLRDGG 180

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I +++      L   + + +      V+R+T  G   +A  +G + G  +W+ G+   +
Sbjct: 181 EIGRRVRRALP-LDEEHKQHLLTKFTTVVRATVKGNIAVAAVQGALGGLIFWILGIEGVI 239

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             G + A ++++P  GA + +   + Y  + G ++    L  +    + +VD  LRP LV
Sbjct: 240 LWGALMAFLSLLPAIGAGLVWVPAAGYFAVTGQVWKCVILVAFCVGVIGLVDNLLRPILV 299

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G   K+P        +GG+   G+ G  IGP++ AL    W       + + E
Sbjct: 300 GKDTKMPDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIFARTEQTDWE 352


>gi|121603896|ref|YP_981225.1| hypothetical protein Pnap_0987 [Polaromonas naphthalenivorans CJ2]
 gi|120592865|gb|ABM36304.1| protein of unknown function UPF0118 [Polaromonas naphthalenivorans
           CJ2]
          Length = 394

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 82/334 (24%), Positives = 142/334 (42%), Gaps = 5/334 (1%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
              + L  ++  V    I      PI+  F+SK  +  T  A+     ++ L I+P+  +
Sbjct: 58  AFFWVLWPYYGAVFWGAIFALMFSPIFLRFMSKLSQRRTLSALFTVSIILVLVILPVGLI 117

Query: 82  FYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
                 E   +  +V   +   G    +    +P   W + L  +   +   L     + 
Sbjct: 118 SALLTQEAAGVYQRVQSGDLSFGRYFQQIYDALPA--WITSLLNRSGLNNLGLIQERVSD 175

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
             T G  FI   A   G    D+ +S   M+  +FFF RDG ++S+++      L     
Sbjct: 176 SLTKGSQFIATQALNIGQNAFDFFVSFFIMLYLMFFFLRDGAALSRRIKQAIP-LEEDIK 234

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAP 259
           + +      VIR+T  G   +A+ +G + G  +W   + + V  G + A ++++P  GA 
Sbjct: 235 RNLFSKFTTVIRATVRGNIAVAVMQGALGGLIFWFLNIHAPVLWGTLMAFLSLLPAVGAA 294

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +  V+IY L  G I+    L  +G + + +VD  LRP LVG   K+P        +GG
Sbjct: 295 LVWIPVAIYFLATGAIWQGVVLIAFGVLVIGLVDNVLRPVLVGKDTKMPDYVVLVSTIGG 354

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +   GL G  IGPV+ A+    W     A ++  
Sbjct: 355 MSLFGLNGFVIGPVIAAMFMAAWDIFSKARQDAP 388


>gi|107026899|ref|YP_624410.1| hypothetical protein Bcen_4556 [Burkholderia cenocepacia AU 1054]
 gi|105896273|gb|ABF79437.1| protein of unknown function UPF0118 [Burkholderia cenocepacia AU
           1054]
          Length = 398

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 68/350 (19%), Positives = 143/350 (40%), Gaps = 5/350 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           ++  + Q    +++  + +   + L  F   V    I+     P+     ++  +     
Sbjct: 50  DSGQDHQKFFYFLLFAVTVGLCWILAPFSGAVFWGTILAILFQPVQRWLAARFGKRRNLA 109

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWASE 121
           A++    ++ + I+PL+F+    + E+  +  ++  A  +        +  +P  +    
Sbjct: 110 ALVTMSLIILIVILPLVFVTATLVQEIAYVYQELKDAQPNYSQYFHDIIHALPTSIQNLL 169

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 + P   K L++         F    A   G     + +S   M+  +FF  RDG
Sbjct: 170 QKYGLTNIPGIQKKLTDG--AAQISQFAATQALSIGQNTFQFVVSFGVMLYMVFFLLRDG 227

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I +++      L   +   +      V+R+T  G   +A+ +G + G  +W+ G+   
Sbjct: 228 GEIGRRVRRALP-LDEEHKNLLLAKFTTVVRATVKGNIAVALVQGALGGLIFWILGIEGV 286

Query: 242 VALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           V  G + A ++++P  GA + +   ++Y L+ G ++    L  +    + +VD  LRP L
Sbjct: 287 VLWGALMAFLSLLPAIGASLVWVPAALYFLMIGAVWKCVILVAFCVGVIGLVDNLLRPIL 346

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           VG   K+P        +GG+   G+ G  IGP++ AL    W     + +
Sbjct: 347 VGKDTKMPDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIYARSEQ 396


>gi|170735629|ref|YP_001776889.1| hypothetical protein Bcenmc03_3243 [Burkholderia cenocepacia MC0-3]
 gi|169817817|gb|ACA92399.1| protein of unknown function UPF0118 [Burkholderia cenocepacia
           MC0-3]
          Length = 356

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 94/326 (28%), Positives = 159/326 (48%), Gaps = 7/326 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+   F          T +A + T ++  L ++P+    
Sbjct: 35  WVIRDFIPAIAWACVIAIAMWPLLKRFESHRLFRSRPTLIATVITAAISLLVVLPVAVAT 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-MWASELWTKHLSHPQSLKILSETFL 141
              + +  +L   +     +GIP+P  +S +P G    +E W  +L HP    + + T +
Sbjct: 95  TQAIAQAHDLREWLHSIQDNGIPLPDVISRLPYGAAQITEWWQANLGHP----LHAATAM 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                +    F  +FG       L   FM++ LF   R G  +S  L       F     
Sbjct: 151 HGVNSEKFIAFGRQFGTKLAHVLLEFGFMLVTLFVILRAGHKLSGALLQGARRAFGRNGA 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           ++   +   +  T  G+ ++ +GEG +LG AY LAGVP    LG++TA+ AM+P  AP+ 
Sbjct: 211 ELIERMVAAVYGTVTGLVVVGLGEGALLGVAYALAGVPHAALLGLVTAVAAMLPFCAPVV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G    A  +   G I +F+ +  +RP L+GG  +LPFL   FG++GG  
Sbjct: 271 FCGAALWLFVQGATMWAVVVAALGFIVVFVAEHFVRPVLIGGSTRLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIM 347
           T GL+GLF+GP LM ++ ++W E I 
Sbjct: 331 TFGLIGLFVGPALMTVLTMLWAEWIA 356


>gi|313499673|gb|ADR61039.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1]
          Length = 354

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 77/343 (22%), Positives = 149/343 (43%), Gaps = 4/343 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M ET L  + +   ++  + +   + L  ++  +  A+I+G    P+    + +      
Sbjct: 1   MNETALQNKALA-VLLALVTIAFFWILLPYYGAIFWAVILGILFAPLQRHLLIRCGRRRN 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A  +T+  + + I+P++      + E   L  ++               D+       
Sbjct: 60  LAAGTSTLVCLLVAILPVIITSALLVQEGATLYQRIESGQLDIAGYVERGKDMLPAFAQR 119

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L    + +   L+     +  T G   +   A  FG    ++ +S   M+  LFFF RD
Sbjct: 120 GLDNMGMGNLDGLRDKITKW-ATQGSQALASQAFSFGQGTFEFLISFGIMMYLLFFFLRD 178

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +++++  +   L     +++     +V+R+T  G  ++AI +G + G  +W   +PS
Sbjct: 179 GPEVARRV-RMAVPLPEHQKRRLQLKFNRVVRATVKGNVLVAITQGALGGFIFWALDIPS 237

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +   V+ A ++++P  GA I +  V+ Y L+ G I     L  +G + + +VD  LRP 
Sbjct: 238 ALVWAVLMAFLSLLPAVGAGIIWAPVAAYFLLTGAILQGVVLTAFGVLVIGLVDNVLRPI 297

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           LVG   ++P        +GG+   GL G  IGP++ AL    W
Sbjct: 298 LVGKDTRMPDYLILVSTLGGLAVFGLNGFVIGPLIAALFVSSW 340


>gi|51596641|ref|YP_070832.1| inner membrane protein [Yersinia pseudotuberculosis IP 32953]
 gi|149365682|ref|ZP_01887717.1| putative membrane protein [Yersinia pestis CA88-4125]
 gi|153950534|ref|YP_001400713.1| inner membrane protein [Yersinia pseudotuberculosis IP 31758]
 gi|161484817|ref|NP_669246.2| putative inner membrane protein [Yersinia pestis KIM 10]
 gi|161511367|ref|NP_993525.2| putative inner membrane protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|162100171|ref|YP_651663.2| putative inner membrane protein [Yersinia pestis Antiqua]
 gi|162139438|ref|YP_647791.2| putative inner membrane protein [Yersinia pestis Nepal516]
 gi|165927526|ref|ZP_02223358.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165939531|ref|ZP_02228077.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011791|ref|ZP_02232689.1| putative membrane protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166210661|ref|ZP_02236696.1| putative membrane protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167400956|ref|ZP_02306462.1| putative membrane protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167422187|ref|ZP_02313940.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167424857|ref|ZP_02316610.1| putative membrane protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167469404|ref|ZP_02334108.1| putative inner membrane protein [Yersinia pestis FV-1]
 gi|170024083|ref|YP_001720588.1| hypothetical protein YPK_1844 [Yersinia pseudotuberculosis YPIII]
 gi|186895697|ref|YP_001872809.1| hypothetical protein YPTS_2391 [Yersinia pseudotuberculosis PB1/+]
 gi|218929498|ref|YP_002347373.1| putative inner membrane protein [Yersinia pestis CO92]
 gi|229837932|ref|ZP_04458091.1| predicted inner membrane protein [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229895092|ref|ZP_04510268.1| predicted inner membrane protein [Yersinia pestis Pestoides A]
 gi|229898493|ref|ZP_04513638.1| predicted inner membrane protein [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229902336|ref|ZP_04517456.1| predicted inner membrane protein [Yersinia pestis Nepal516]
 gi|270490484|ref|ZP_06207558.1| putative membrane protein [Yersinia pestis KIM D27]
 gi|294503589|ref|YP_003567651.1| hypothetical protein YPZ3_1479 [Yersinia pestis Z176003]
 gi|51589923|emb|CAH21555.1| putative membrane protein [Yersinia pseudotuberculosis IP 32953]
 gi|115348109|emb|CAL21036.1| putative membrane protein [Yersinia pestis CO92]
 gi|149292095|gb|EDM42169.1| putative membrane protein [Yersinia pestis CA88-4125]
 gi|152962029|gb|ABS49490.1| putative membrane protein [Yersinia pseudotuberculosis IP 31758]
 gi|165912580|gb|EDR31211.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165920581|gb|EDR37858.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989256|gb|EDR41557.1| putative membrane protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207841|gb|EDR52321.1| putative membrane protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166958999|gb|EDR56020.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167049809|gb|EDR61217.1| putative membrane protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167056044|gb|EDR65822.1| putative membrane protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169750617|gb|ACA68135.1| protein of unknown function UPF0118 [Yersinia pseudotuberculosis
           YPIII]
 gi|186698723|gb|ACC89352.1| protein of unknown function UPF0118 [Yersinia pseudotuberculosis
           PB1/+]
 gi|229680671|gb|EEO76767.1| predicted inner membrane protein [Yersinia pestis Nepal516]
 gi|229688041|gb|EEO80112.1| predicted inner membrane protein [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229694298|gb|EEO84345.1| predicted inner membrane protein [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229701854|gb|EEO89877.1| predicted inner membrane protein [Yersinia pestis Pestoides A]
 gi|262361631|gb|ACY58352.1| hypothetical protein YPD4_1444 [Yersinia pestis D106004]
 gi|262365627|gb|ACY62184.1| hypothetical protein YPD8_1501 [Yersinia pestis D182038]
 gi|270338988|gb|EFA49765.1| putative membrane protein [Yersinia pestis KIM D27]
 gi|294354048|gb|ADE64389.1| hypothetical protein YPZ3_1479 [Yersinia pestis Z176003]
 gi|320015062|gb|ADV98633.1| putative inner membrane protein [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 367

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 140/346 (40%), Gaps = 6/346 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             IM +I+ S + ++ F      A ++   +WP+            +   V+ T+ ++ L
Sbjct: 19  IFIMGMIIASFWVIQPFVMGFAWAGMVVIATWPLLIRLEKLLWGRRSLAVVVMTILLILL 78

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           F++P+  L    +     L+      +   +P   W+  IP  G      W   +S   +
Sbjct: 79  FVIPIALLVSSLVENSAPLIQWASSPSNLRMPNVDWMKSIPLIGDKLYSSWNTLISGGAN 138

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F ++     Y  G  ++  +    
Sbjct: 139 ALMAKVQPYIGATATWFVAQAAHVGYFLIHLALMVLFSVL----LYIHGEQVALGIRHFA 194

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                     +  +  K IR+  LG+ + A+ + ++ G    +AG+     L V+  I  
Sbjct: 195 MRAADKRGDAVVVMAAKAIRAVALGVVVTALVQAILGGIGLAIAGIQYATLLTVLMFICC 254

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +   G  +      I++   G+    T L +W  I +  +D  LRP+L+     +P +  
Sbjct: 255 VAQLGPLLVLVPAVIWVYWTGDTTWGTILLVWSCI-VGTLDNFLRPYLIRMEADMPMILI 313

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G++GG+ + G++GLFIGPV++A+   +    +    E +E ++ 
Sbjct: 314 LSGVIGGLLSFGMIGLFIGPVVLAISYRLISAWVHETPEPEESVTD 359


>gi|15597847|ref|NP_251341.1| hypothetical protein PA2651 [Pseudomonas aeruginosa PAO1]
 gi|107102172|ref|ZP_01366090.1| hypothetical protein PaerPA_01003222 [Pseudomonas aeruginosa PACS2]
 gi|218891187|ref|YP_002440053.1| hypothetical protein PLES_24531 [Pseudomonas aeruginosa LESB58]
 gi|254235633|ref|ZP_04928956.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|254241080|ref|ZP_04934402.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|9948721|gb|AAG06039.1|AE004694_2 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|126167564|gb|EAZ53075.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126194458|gb|EAZ58521.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218771412|emb|CAW27179.1| putative exported protein [Pseudomonas aeruginosa LESB58]
          Length = 352

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 72/331 (21%), Positives = 136/331 (41%), Gaps = 5/331 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + L  F+  V    I+     P+      +  +     A+I  +  + + I+P++F+   
Sbjct: 24  WLLLPFYGAVFWGTILAIIFAPVQRRLQVRLRDRKNLAALITLLICVLIVIIPVIFIAGS 83

Query: 85  GMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
            + E   +  +V          + + ++ +P      +   +      S      + +  
Sbjct: 84  LVQEGASVYQRVKSGELNFAAYLQQAVAALPPS--VHQWLERFDLANLSSLQEKLSSVAM 141

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
                +   A   G   LD+ +S   M+  LFF  RDG  + +++      L   +   +
Sbjct: 142 QASQVVATKAFSIGQNTLDFVISFGIMLYLLFFLLRDGRVLGRRIKQAVP-LSQEHKHHL 200

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISF 262
                 VIR+T  G   +A  +G + G  +WL G+   +  G + A ++++P  GA + +
Sbjct: 201 FAKFTTVIRATVKGNIAVAATQGALGGLIFWLLGIEGALLWGTLMAFLSLLPAIGAALIW 260

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             V+ Y L+ G I+    L L+  + + +VD  LRP LVG   K+P        +GG+  
Sbjct: 261 APVAAYFLLTGAIWQGVVLILFCVVVIGLVDNILRPILVGKDTKMPDYVVLISTLGGMAL 320

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            GL G  IGP++ AL    W       +E +
Sbjct: 321 FGLNGFVIGPLIAALFMASWDLFTGREEEPQ 351


>gi|26990854|ref|NP_746279.1| hypothetical protein PP_4162 [Pseudomonas putida KT2440]
 gi|24985865|gb|AAN69743.1|AE016611_1 membrane protein, putative [Pseudomonas putida KT2440]
          Length = 350

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 84/353 (23%), Positives = 163/353 (46%), Gaps = 7/353 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + N + +++ +++ ++   L+ +  F + +L   I+ F SWP+            T  A 
Sbjct: 2   VNNDRLLVQILLVALLGAGLWVMAPFISALLWGAILAFASWPLMRFLTRLLGGRETLAAG 61

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASEL 122
           + T++ + +  +PL++L +     +++  + V      G+P  P WL  IP  G      
Sbjct: 62  LLTMAWILIVALPLVWLGFNLADHIRDATAFVRDVQVDGLPDAPAWLGGIPFVGERLVNG 121

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           W        +L    + +    G   + R A + G   L+  LS++F    +FFFYRDG 
Sbjct: 122 WQSLDQKGAALLTSIKPYFGQVGNWLLARSA-QIGSGVLELTLSLVF----VFFFYRDGP 176

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            ++  +  L   L     +    +V   ++    G+   A  + L+    + +AGVP  +
Sbjct: 177 RLAAFVLRLLHRLVGERAEYYLDLVAATVQRVVNGVIGTAAAQALLALIGFLIAGVPGAI 236

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            LG++T ++++IP G P+++   + +L+ KG    A  L +WG   +  VD  L+P+L+ 
Sbjct: 237 VLGLVTFMLSLIPMGPPLAWIPATAWLVWKGEYGMAVFLGVWGTFVISGVDNVLKPYLIS 296

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
               LP +    G+ GG+   G +GLFIGP L+A+   +  +      +   +
Sbjct: 297 RGGNLPLVIVLLGVFGGLLAFGFIGLFIGPTLLAVGYSLLLDWSRNAAQQPPQ 349


>gi|161520866|ref|YP_001584293.1| hypothetical protein Bmul_4321 [Burkholderia multivorans ATCC
           17616]
 gi|160344916|gb|ABX18001.1| protein of unknown function UPF0118 [Burkholderia multivorans ATCC
           17616]
          Length = 380

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 90/324 (27%), Positives = 160/324 (49%), Gaps = 7/324 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFIS--KKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+     +        T +A I T +V  L ++P+    
Sbjct: 59  WVIRAFIPAIAWACVIAIAMWPLLQRIEANALLRNRPTLVATIVTAAVSLLVVLPVAMAL 118

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM-WASELWTKHLSHPQSLKILSETFL 141
              +++  +L         +GIP+P  ++ +P G    ++ W  +L HP    + + T +
Sbjct: 119 TQAIVQAHDLREWFQSIRDNGIPLPDVVNRLPYGAAQITQWWQTNLGHP----LHAATAM 174

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                + +  F  +FG           FM++ LF   R G  ++ +L    +  F     
Sbjct: 175 HGASGEKVLAFGRQFGTRVAHAVFEFGFMLVTLFVIVRAGHRLAGELLQGAQRAFGHDGA 234

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            +   +   ++ T  G+ ++ +GEG +LG AY LAGVP    LGV+TA+ AM+P  AP+ 
Sbjct: 235 HLIERMVAAVQGTVTGLVVVGLGEGALLGVAYALAGVPHAALLGVVTAVAAMLPFCAPLV 294

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G    A  + + G + +F+ +  +RP L+G   +LPFL   FG++GG  
Sbjct: 295 FCGAALWLFVQGATVWAIVIAVLGFVVVFVAEHFVRPVLIGNSARLPFLLVLFGILGGAE 354

Query: 322 TMGLLGLFIGPVLMALIAVIWKES 345
           T GL+GLF+GP LM ++ V+W E 
Sbjct: 355 TFGLIGLFVGPALMTVLTVLWAEW 378


>gi|313497990|gb|ADR59356.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1]
          Length = 350

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 84/353 (23%), Positives = 163/353 (46%), Gaps = 7/353 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + N + +++ +++ ++   L+ +  F + +L   I+ F SWP+            T  A 
Sbjct: 2   VNNDRLLVQILLVALLGAGLWVMAPFISALLWGAILAFASWPLMRFLTRLLGGRETLAAG 61

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASEL 122
           + T++ + +  +PL++L +     +++  + V      G+P  P WL  IP  G      
Sbjct: 62  LLTMAWILIVALPLVWLGFNLADHIRDATAFVRDVQVDGLPDAPAWLGGIPFVGERLVNG 121

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           W        +L    + +    G   + R A + G   L+  LS++F    +FFFYRDG 
Sbjct: 122 WQSLDQQGAALLASIKPYFGQVGNWLLARSA-QIGSGVLELTLSLVF----VFFFYRDGP 176

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            ++  +  L   L     +    +V   ++    G+   A  + L+    + +AGVP  +
Sbjct: 177 RLAAFVLRLLHRLVGERAEYYLDLVAATVQRVVNGVIGTAAAQALLALIGFLIAGVPGAI 236

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            LG++T ++++IP G P+++   + +L+ KG    A  L +WG   +  VD  L+P+L+ 
Sbjct: 237 VLGLVTFMLSLIPMGPPLAWIPATAWLVWKGEYGMAVFLGVWGTFVISGVDNVLKPYLIS 296

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
               LP +    G+ GG+   G +GLFIGP L+A+   +  +      +   +
Sbjct: 297 RGGNLPLVIVLLGVFGGLLAFGFIGLFIGPTLLAVGYSLLLDWSRNAAQQPPQ 349


>gi|238791674|ref|ZP_04635311.1| hypothetical protein yinte0001_13870 [Yersinia intermedia ATCC
           29909]
 gi|238728778|gb|EEQ20295.1| hypothetical protein yinte0001_13870 [Yersinia intermedia ATCC
           29909]
          Length = 367

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 70/358 (19%), Positives = 139/358 (38%), Gaps = 6/358 (1%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R   L         IM +I+ S + ++ F      A ++   +WP+              
Sbjct: 7   RRFDLPKLMFGVIFIMIMIIASFWVVQPFIMGFAWAGMVVIATWPLLIRLQKLLWGKRWL 66

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWAS 120
             ++ T+ ++ LF++P+  L    +     L+      +   +P   WL  IP  G    
Sbjct: 67  AVIVMTLLLILLFVIPIALLVSSLVENSGPLIQWASSPSNLRMPDVTWLQSIPMVGNKLY 126

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   ++   +  I            ++   A+  G   +   L ++F ++  F     
Sbjct: 127 SSWHTLVAGGGNAMIAKVQPYIGAAATWLVAQAAHVGYFLIHLALMVLFSVLLYF----H 182

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +   +              +  +  K IR+  LG+ + A+ + ++ G    +AG+  
Sbjct: 183 GEQVGLGIRHFAVRAADKRGDGVVVLAAKAIRAVALGVVVTALVQAVLGGIGLAIAGIQY 242

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
                V+  I  +   G  +      I+L   G+    T L +W  I +  +D  LRP+L
Sbjct: 243 ATLFTVLMFICCVAQLGPLLILVPAIIWLYWTGDTTWGTALLIWSCI-VGTMDNVLRPYL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +     +P +    G++GG+ + G++GLFIGPV++A+   +    +    E +E I  
Sbjct: 302 IRMEADMPMILILSGVIGGLLSFGMIGLFIGPVVLAISYRLTSAWVNEAPEPEESIQE 359


>gi|116692369|ref|YP_837902.1| hypothetical protein Bcen2424_4274 [Burkholderia cenocepacia
           HI2424]
 gi|116650369|gb|ABK11009.1| protein of unknown function UPF0118 [Burkholderia cenocepacia
           HI2424]
          Length = 356

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 94/326 (28%), Positives = 158/326 (48%), Gaps = 7/326 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+   F          T +A + T ++  L ++P+    
Sbjct: 35  WVIRDFIPAIAWACVIAIAMWPLLKRFESHRLFRSRPTLIATVITAAISLLVVLPVAVAT 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-MWASELWTKHLSHPQSLKILSETFL 141
                +  +L   +     +GIP+P  +S +P G    +E W  +L HP    + + T +
Sbjct: 95  TQAFAQAHDLREWLHTVQDNGIPLPDVVSRLPYGAAQITEWWQANLGHP----LHAATAM 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                +    F  +FG       L   FM++ LF   R G  +S  L       F     
Sbjct: 151 HGVNGEKFIAFGRQFGTKLAHVLLEFGFMLVTLFVILRAGHKLSGALLQGARRAFGRNGA 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           ++   +   +  T  G+ ++ +GEG +LG AY LAGVP    LG++TA+ AM+P  AP+ 
Sbjct: 211 ELIERMVAAVYGTVTGLVVVGLGEGALLGVAYALAGVPHAALLGLVTAVAAMLPFCAPVV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G    A  +   G I +F+ +  +RP L+GG  +LPFL   FG++GG  
Sbjct: 271 FCGAALWLFVQGATMWAVVVAALGFIVVFVAEHFVRPVLIGGSTRLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIM 347
           T GL+GLF+GP LM ++ ++W E I 
Sbjct: 331 TFGLIGLFVGPALMTVLTMLWAEWIA 356


>gi|148546943|ref|YP_001267045.1| hypothetical protein Pput_1705 [Pseudomonas putida F1]
 gi|148511001|gb|ABQ77861.1| protein of unknown function UPF0118 [Pseudomonas putida F1]
          Length = 349

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 84/353 (23%), Positives = 164/353 (46%), Gaps = 7/353 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + N + +++ +++ ++   L+ +  F + +L   I+ F SWP+            T  A 
Sbjct: 2   VNNDRLLVQILLVALLGAGLWVMAPFISALLWGAILAFASWPLMRFLTRLLGGRETLAAG 61

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASEL 122
           + T++ + +  +PL++L +     +++  + V      G+P  P WL  IP  G      
Sbjct: 62  LLTMAWILIVALPLVWLGFNLADHIRDATAFVRDVQVDGLPDAPAWLGGIPFVGERLVNG 121

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           W        +L    + +    G   + R A + G   L+  LS++F    +FFFYRDG 
Sbjct: 122 WQSLDQQGAALLTSIKPYFGQVGNWLLARSA-QIGSGVLELTLSLVF----VFFFYRDGP 176

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            ++  +  L   L     +    +V   ++    G+   A  + L+    + +AGVP  +
Sbjct: 177 RLAAFVLRLLHRLVGERAEYYLDLVAATVQRVVNGVIGTAAAQALLALIGFLIAGVPGAI 236

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            LG++T ++++IP G P+++   + +L+ KG    A  L +WG   +  VD  L+P+L+ 
Sbjct: 237 VLGLVTFMLSLIPMGPPLAWIPATAWLVWKGEYGMAVFLGVWGTFVISGVDNVLKPYLIS 296

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
               LP +    G+ GG+   G +GLFIGP L+A+   +  +      +  ++
Sbjct: 297 RGGNLPLVIVLLGVFGGLLAFGFIGLFIGPTLLAVGYSLLLDWSRNAAQPPQQ 349


>gi|319795203|ref|YP_004156843.1| hypothetical protein Varpa_4567 [Variovorax paradoxus EPS]
 gi|315597666|gb|ADU38732.1| protein of unknown function UPF0118 [Variovorax paradoxus EPS]
          Length = 377

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 76/336 (22%), Positives = 138/336 (41%), Gaps = 3/336 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +G+   ++  + +  ++ L  FF  VL  + +     P+Y   + K        A+   
Sbjct: 7   QRGVFIALLAAVTVAFVWVLLPFFGAVLWGVALAILFTPLYKWLLKKMRGKPNAAALATL 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
              + + I+PL  +    + E+  +   +     +     + + D       S +   +L
Sbjct: 67  AICLFIVILPLAMVGVSLVQEIALVTQNIRSGQINFAAYFQQILDASPQWLLSLVERFNL 126

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               + +    T         I   A   G    D+ +S   M+  L+F  RDG ++S+ 
Sbjct: 127 GDMAAWQARISTAAG-QASQIIASQALAIGQNTFDFIVSFFVMLYLLYFLVRDGSTLSKT 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L   +   +      VIR+T  G   +AI +G + G A+W  GV   +   V+
Sbjct: 186 MRDAVP-LAKPHTHYLLNKFTTVIRATVKGNVAVAIAQGTIGGLAFWFLGVQGALLWAVL 244

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A ++++P  GA + +  V+IY L  G+ +    L   G   + +VD  LRP LVG   +
Sbjct: 245 MAFLSLLPAVGAALIWGPVAIYFLATGHFWQGGVLIFVGVFVIGLVDNILRPVLVGKDTQ 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +P        +GG+   G+ G  IGPV+ AL    W
Sbjct: 305 MPDYIVLMSTIGGMAIFGINGFVIGPVIAALFMAAW 340


>gi|331000798|ref|ZP_08324444.1| hypothetical protein HMPREF9439_02096 [Parasutterella
           excrementihominis YIT 11859]
 gi|329570326|gb|EGG52059.1| hypothetical protein HMPREF9439_02096 [Parasutterella
           excrementihominis YIT 11859]
          Length = 402

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 87/330 (26%), Positives = 152/330 (46%), Gaps = 6/330 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           FI +     +  F   +  A +I   SWP++     +    +    +I    +  L ++P
Sbjct: 21  FIAIGCFLVVWPFATAMSVAAVIAIVSWPLFKRVRKEVGGRNLVATLIMVSLLAILIVLP 80

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKIL 136
           +  L      E+  L+  V      G  VP  L +IP  G WA       L + + L  +
Sbjct: 81  IAGLSLVSAQEIPTLIRYVREWIASGFTVPEELKEIPFVGEWAYTQAAHLLGNKEELAAI 140

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           ++        D + R A    ++  D  L +  M+  +FFFYRDG  +SQ+  +L   + 
Sbjct: 141 AQKLF-----DPVSRAALAGAVMLGDGLLQLFLMLFVIFFFYRDGEVLSQKSLALLTRMS 195

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
            +   ++  I+    RS   G+   A G+G+V    +W+AGVP  + LGV   +++ +P 
Sbjct: 196 GSIGAEVRDIIVNTTRSVVFGIVGSAAGQGVVALIGFWIAGVPGAITLGVAVFVLSAVPI 255

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           G P+ +   + +L  KG +  A  L LWG++ +  VD  L+P L+     LP    + G+
Sbjct: 256 GPPLVWGPAAFWLYYKGEVGMAIFLVLWGSLAVSSVDNFLKPILISKGASLPLSLIYLGV 315

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            GGV   G +G+ +GPV++A+   + K  +
Sbjct: 316 FGGVLAFGFMGIILGPVVIAVGIAMSKTWL 345


>gi|329894051|ref|ZP_08270036.1| putative permease PerM family [gamma proteobacterium IMCC3088]
 gi|328923223|gb|EGG30543.1| putative permease PerM family [gamma proteobacterium IMCC3088]
          Length = 378

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 82/352 (23%), Positives = 147/352 (41%), Gaps = 8/352 (2%)

Query: 2   RETMLNPQGIMRWMIMFIILVSL---YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES 58
           RE  +     +R  I  +I VS+   Y +  FF+ +L A II     P+++  + +    
Sbjct: 6   REPDMQKVIEIRSFIAALIAVSIAFTYLMLPFFSVILWACIIALLFHPLHAKLLDRYPRH 65

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
               A++  ++ + + + P LFL    + +   +  ++       +    W+  I     
Sbjct: 66  ENIAALVTLLACVLIAVTPALFLASSFIKQGTAIYQQLESGQ---LKPALWIDQIRQAFP 122

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +   + L    +        L       +   A   G   L + +S+  M+   FF  
Sbjct: 123 VIDELLRTLGFDVAEVKQQLGSLSVEAGKVMASNALLIGQNTLGWLVSLGLMLYLTFFML 182

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           RDG  +   L      L     + + +   +V R+T  G  ++A+ +G + G  +WL  +
Sbjct: 183 RDGARLIPILIRALP-LGDERERLLMQKFAEVTRATIKGSLVVAMAQGSLGGLIFWLLDL 241

Query: 239 PSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P  V  GV+  ++++IP  GA + +  V +YLL  GN  +   L  +GAI + +VD  LR
Sbjct: 242 PGPVLWGVVMTVLSLIPVVGASLIWLPVGLYLLATGNTSDGIILIAFGAIVIGLVDNILR 301

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           P LVG   KLP        +GG    G+ G  +GP++  L    W+      
Sbjct: 302 PILVGRDTKLPDYLVLLSTLGGFTMFGMTGFVLGPLIAVLFITFWEIFSREF 353


>gi|310815720|ref|YP_003963684.1| hypothetical protein EIO_1241 [Ketogulonicigenium vulgare Y25]
 gi|308754455|gb|ADO42384.1| putative membrane protein [Ketogulonicigenium vulgare Y25]
          Length = 374

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 72/333 (21%), Positives = 142/333 (42%), Gaps = 3/333 (0%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            M++ + +  ++ +  F+  VL A+I+     P++   +       +  A  +T++ +C+
Sbjct: 13  VMLIIVTIAFVWLMLPFYGAVLWAIILAILFNPLHRRLVRGLGGRRSLAAAFSTLACICI 72

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            ++P   +      E   L ++V   +   I +   +           L   +LS    +
Sbjct: 73  VVIPGSMVLAALAREAGSLYARVSAPDFDAISILERVHAGMPSYLVEALSAFNLSEFDQI 132

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           +     FL  +    +   A   G       + +  M+  LFF +RDG  ++  +     
Sbjct: 133 QTRLTGFLG-DAAQTVATGALNIGQSTAQLVIGLGVMLYVLFFMFRDGSQLA-IIIRRAS 190

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            L     + + R    V++ T  G  IIA+ +G + G  + L G+ +    GV+ A++++
Sbjct: 191 PLTDYQTEHVLRKFTTVVKYTVRGNVIIAVIQGAIGGITFLLLGIEAAFLWGVLMAVLSL 250

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +P  GA + ++  + YL + G +     L   G + +  +D  LRP LVG   KLP    
Sbjct: 251 LPAVGAFLVWSPAAAYLFLSGQVIQGFILVAVGVVIISTIDNILRPPLVGQGTKLPDYMV 310

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
               +GG+   G+ G  IGP++ AL   +W   
Sbjct: 311 LVSTLGGLALFGVNGFVIGPLIAALFVALWSLY 343


>gi|238796346|ref|ZP_04639855.1| hypothetical protein ymoll0001_21740 [Yersinia mollaretii ATCC
           43969]
 gi|238719791|gb|EEQ11598.1| hypothetical protein ymoll0001_21740 [Yersinia mollaretii ATCC
           43969]
          Length = 367

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 65/346 (18%), Positives = 135/346 (39%), Gaps = 6/346 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             I+ +I+ S + ++ F      A ++   +WP+                 I T+ ++ L
Sbjct: 19  IFILIMIVASFWVVQPFIMGFAWAGMVVIATWPLLIRLQKLLWGKRWLAVFIMTLLLILL 78

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           F++P+  L    +     L+      +   +P   WL  +P  G      W   ++   +
Sbjct: 79  FVIPIALLVSSLVENSGPLIQWASSPSNLRMPDVTWLQSVPMVGDKLYNSWHTLIAGGGN 138

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             I            ++   A+  G   +   L ++F ++  F     G  +   +    
Sbjct: 139 AIIAKVQPYVGAAATWLVAQAAHVGYFLIHLALMVLFSVLLYF----HGEQVGLGIRHFA 194

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                     +  +  K IR+  LG+ + A+ + ++ G    +AG+       V+  I  
Sbjct: 195 VRAADKRGDAVVVMAAKAIRAVALGVVVTALVQAVLGGIGLAIAGIQYATLFTVLMFICC 254

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +   G  +      ++L   G+    T L +W    +  +D  LRP+L+     +P +  
Sbjct: 255 VAQLGPLLILVPAILWLYWTGDTTWGTVLLVWSC-VVGTMDNFLRPYLIRMEADMPMILI 313

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G++GG+ + G++GLFIGPV++A+   +    +    E +E I  
Sbjct: 314 LSGVIGGLLSFGMIGLFIGPVVLAISYRLTAAWVNEAPEPEESIKE 359


>gi|312960058|ref|ZP_07774571.1| hypothetical protein PFWH6_1962 [Pseudomonas fluorescens WH6]
 gi|311285715|gb|EFQ64283.1| hypothetical protein PFWH6_1962 [Pseudomonas fluorescens WH6]
          Length = 355

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 74/331 (22%), Positives = 138/331 (41%), Gaps = 3/331 (0%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             ++ L  F+  V  A+I+G    P+      +   +    ++   +  + + I+P++  
Sbjct: 21  AFIWILLPFYGAVFWAVILGIIFAPLQRRLQQRFGWNRNLTSLTTLMVCLVIAILPVIIT 80

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E   L   V                     +   L    L + + L+       
Sbjct: 81  SALLVQEGATLYKNVESGKLDVAGYIEQFKHFLPPYFQHLLDRFGLGNLEGLREKIVK-S 139

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
              G  F    A  FG    D+ +S   M+  LFF  RDG  + +++ +    L     +
Sbjct: 140 AMQGSQFFATQAFSFGQGTFDFLVSFFIMLYLLFFLLRDGPELVRKVRTAVP-LAEPQKR 198

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPI 260
           ++     +V+R+T  G  ++A+ +G + G  +W   +P+ +   V+ A ++++P  GA I
Sbjct: 199 RLQLKFNRVVRATVKGNVLVAVTQGALGGLIFWFLDIPNALLWAVLMAFLSLLPAVGAGI 258

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +  V+ Y L+ G+I+    L L+G   + +VD  LRP LVG   K+P        +GG+
Sbjct: 259 VWAPVAAYFLLSGSIWQGVVLGLFGVFVIGLVDNVLRPILVGKDTKMPDYLILISTLGGL 318

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
              GL G  IGP++ AL    W   + +   
Sbjct: 319 SVFGLNGFVIGPLVAALFMSSWALFVESKPR 349


>gi|239833729|ref|ZP_04682057.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301]
 gi|239821792|gb|EEQ93361.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301]
          Length = 375

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 78/352 (22%), Positives = 144/352 (40%), Gaps = 7/352 (1%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            M   +     ++  + +   + L  +++ VL A+I+     P+               A
Sbjct: 20  FMSVQRASFYILLALVTIAFAWLLLPYYSAVLWAVILAVVFSPVQQRLERLLGGRKNIAA 79

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW--ASE 121
           +++ +  +CL I+P+L +F   + E   L  ++         +  ++S I G +     E
Sbjct: 80  LLSVLMCICLVIIPMLAIFGSLVQEGNSLYQRLSSRE---FDLNSYISRILGALPDSLEE 136

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
             T+      +      +     G          FG   L + +    M+  LFF +RDG
Sbjct: 137 WLTRFELGDFAEWRSRISSAIMQGSQLFAGRLVSFGQNTLQFFIGFGIMLYLLFFLFRDG 196

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +++      L   Y ++       VIR+T  G  IIAI +G + G  +WL GV + 
Sbjct: 197 AELGRKIRQ-AIPLNDDYTRQFLEKFTAVIRATVKGNIIIAIIQGTIGGVTFWLLGVEAA 255

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +  GV+   ++M+P  GA + +   + +    G   +   L   G   + +VD  LRP L
Sbjct: 256 LLWGVMMTFLSMLPAVGAALVWIPAAAWFFASGEWISGAVLIFVGVFVIGLVDNLLRPPL 315

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           VG   ++P        VGG+  +G+ G  +GP++ A+    W       K N
Sbjct: 316 VGKGTRMPDYVVLISTVGGISLIGINGFVVGPLIAAMFIAAWSLLAEEQKGN 367


>gi|303257155|ref|ZP_07343169.1| putative membrane protein [Burkholderiales bacterium 1_1_47]
 gi|302860646|gb|EFL83723.1| putative membrane protein [Burkholderiales bacterium 1_1_47]
          Length = 402

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 87/330 (26%), Positives = 152/330 (46%), Gaps = 6/330 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           FI +     +  F   +  A +I   SWP++     +    +    +I    +  L ++P
Sbjct: 21  FIAIGCFLVVWPFATAMSVAAVIAIVSWPLFKRVRKEVGGRNLVATLIMVSLLAILIVLP 80

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKIL 136
           +  L      E+  L+  V      G  VP  L +IP  G WA       L + + L  +
Sbjct: 81  IAGLSLVSAQEIPTLIRYVREWIASGFTVPEELKEIPFVGEWAYTQAAHLLGNKEELAAI 140

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           ++        D + R A    ++  D  L +  M+  +FFFYRDG  +SQ+  +L   + 
Sbjct: 141 AQKLF-----DPVSRAALAGAVMLGDGLLQLFLMLFVIFFFYRDGEVLSQKSLALLTRMS 195

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
            +   ++  I+    RS   G+   A G+G+V    +W+AGVP  + LGV   +++ +P 
Sbjct: 196 GSIGAEVRDIIVNTTRSVVFGIVGSAAGQGVVALIGFWIAGVPGAITLGVAVFVLSAVPI 255

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           G P+ +   + +L  KG +  A  L LWG++ +  VD  L+P L+     LP    + G+
Sbjct: 256 GPPLVWGPAAFWLYYKGEVGMAIFLVLWGSLAVSSVDNFLKPILISKGASLPLSLIYLGV 315

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            GGV   G +G+ +GPV++A+   + K  +
Sbjct: 316 FGGVLAFGFMGIILGPVVIAVGIAMSKTWL 345


>gi|332161640|ref|YP_004298217.1| putative inner membrane protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318605868|emb|CBY27366.1| putative membrane protein [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325665870|gb|ADZ42514.1| putative inner membrane protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330861398|emb|CBX71629.1| UPF0118 inner membrane protein ydiK [Yersinia enterocolitica
           W22703]
          Length = 367

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 73/359 (20%), Positives = 143/359 (39%), Gaps = 6/359 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R   L         IM +I+ S + ++ F      A ++   +WP+             
Sbjct: 6   LRRFDLPKLMFGVIFIMIMIIASFWVVQPFIMGFAWAGMVVIATWPLLIRLQKILWGKRW 65

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWA 119
             A+I T+ ++ LF++P+  L    +     L+      +   +P   WL  IP  G   
Sbjct: 66  LAAIIMTILLVLLFVIPIALLVSSLVENSGPLIQWASSPSNLKMPDVTWLKSIPMVGNKL 125

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              W   ++   ++ I            ++   A+  G   +   L ++F I+  F    
Sbjct: 126 YSGWHSLIAGGGNVLIAKIQPYVGAAATWLVAQAAHIGYFLIHLALMVLFSILLYF---- 181

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G  +   +              +  +  K IR+  LG+ + A+ + ++ G    +AG+ 
Sbjct: 182 HGEQVGLGIRHFAVRAADKRGDAVVVLAAKAIRAVALGVVVTALVQAVLGGIGLAIAGIQ 241

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
                 V+  I  +   G  +      I+L   G+    T L +W  I +  +D  LRP+
Sbjct: 242 YATLFTVLMFICCVAQLGPLLILIPAVIWLYWTGDSTWGTILLVWSCI-VGTMDNVLRPY 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L+     +P +    G++GG+ + G++GLFIGPV++A+   +    +    E +E I+ 
Sbjct: 301 LIRMEADMPMILILSGVIGGLLSFGMIGLFIGPVVLAISYRLTSAWVNEAPEPEESITE 359


>gi|226953805|ref|ZP_03824269.1| protein of hypothetical function UPF0118 [Acinetobacter sp. ATCC
           27244]
 gi|294651707|ref|ZP_06729009.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
 gi|226835444|gb|EEH67827.1| protein of hypothetical function UPF0118 [Acinetobacter sp. ATCC
           27244]
 gi|292822426|gb|EFF81327.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
          Length = 366

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 93/350 (26%), Positives = 172/350 (49%), Gaps = 9/350 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE--SSTFLAVI 65
            + ++  +   ++ +    LK F  PVL A II + +WP+Y     +       T  A I
Sbjct: 10  QRVLLFGLFFVLMFLGFNILKYFIVPVLWAAIIAYMTWPVYLWVQRRFFGENRPTLNATI 69

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPG-GMWASELW 123
               V+ +  VP +F  +   LE + L   +      G I VP ++ ++P  G   S   
Sbjct: 70  MISLVILVIGVPFIFAIFLLQLEGRNLYMNLQKQLFSGHIQVPDFIRNLPVIGEDISHTI 129

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +    P S+      +++++       +            + + F ++ LFFFYRDG +
Sbjct: 130 NELSGDPNSITRSIAEWIQSH-----LSYGRFVLSEISRNLVKLTFALMTLFFFYRDGQT 184

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           I  Q+    E +         + + +  R+   G+ + A+ + L+ G +Y++AGVP+ + 
Sbjct: 185 ILAQVSRALEMVIGPRVHHYLQTISETTRAVVYGIGLTAVAQALLAGLSYFVAGVPNPML 244

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           L ++T I+A+IP G P+S+  V ++L  +G    A  +  WG + +   D  +RP ++ G
Sbjct: 245 LTIVTFILALIPFGTPVSYLGVGLWLFAQGQTVEAIGVVTWGVLIVSSADNVIRPLVISG 304

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             ++PFL   FG++GG+ + GL+GLFIGPV++A++  IW+E +    E +
Sbjct: 305 ATQIPFLLIMFGVLGGIASFGLVGLFIGPVILAVLLAIWREWLHENVEQQ 354


>gi|167850688|ref|ZP_02476196.1| Predicted permease PerM family protein [Burkholderia pseudomallei
           B7210]
          Length = 352

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 65/353 (18%), Positives = 137/353 (38%), Gaps = 3/353 (0%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           ++  + Q     +++ + +   + L  FF  +    I+     P+     ++  +     
Sbjct: 2   DSGNDHQKFFHLLLLVVTVGLCWILTPFFGAIFWGTILAILFQPVQRWLAARFGKRRNLA 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A++    ++ + I+PL F+    + E+     ++     +     +             L
Sbjct: 62  ALVTLSLIILIVILPLAFVTATLVQEIAYAYQQIKTMQSNMTQYFQEFMHALPSSVHRVL 121

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               L+    ++             F+   A   G     + +S   M+  +FF  RDG 
Sbjct: 122 HNYGLTDIAGIQKKLTD-GAAAISQFVAAQALSIGQNTFQFVVSFGVMLYLVFFLLRDGG 180

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I +++      L   + + +      V+R+T  G   +A  +G + G  +W+ G+   +
Sbjct: 181 EIGRRVRRALP-LDEEHKQHLLTKFTTVVRATVKGNIAVAAVQGALGGLIFWILGIEGVI 239

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             G + A ++++P  GA + +   + Y  + G I+    L  +    + +VD  LRP LV
Sbjct: 240 LWGALMAFLSLLPAIGAGLVWVPAAGYFAVTGQIWKCVILVAFCVGVIGLVDNLLRPILV 299

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G   K+P        +GG+   G+ G  IGP++ AL    W       + + E
Sbjct: 300 GKDTKMPDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIFARTEQTDWE 352


>gi|258542772|ref|YP_003188205.1| transporter [Acetobacter pasteurianus IFO 3283-01]
 gi|256633850|dbj|BAH99825.1| transporter [Acetobacter pasteurianus IFO 3283-01]
 gi|256636909|dbj|BAI02878.1| transporter [Acetobacter pasteurianus IFO 3283-03]
 gi|256639962|dbj|BAI05924.1| transporter [Acetobacter pasteurianus IFO 3283-07]
 gi|256643018|dbj|BAI08973.1| transporter [Acetobacter pasteurianus IFO 3283-22]
 gi|256646073|dbj|BAI12021.1| transporter [Acetobacter pasteurianus IFO 3283-26]
 gi|256649126|dbj|BAI15067.1| transporter [Acetobacter pasteurianus IFO 3283-32]
 gi|256652113|dbj|BAI18047.1| transporter [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655170|dbj|BAI21097.1| transporter [Acetobacter pasteurianus IFO 3283-12]
          Length = 390

 Score =  225 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 106/350 (30%), Positives = 170/350 (48%), Gaps = 8/350 (2%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE--SS 59
           + +    +     + +FI+ V++Y ++GF   +    +    +WP+Y+   +K     S 
Sbjct: 40  QRSRRGQEMARTVLALFIVGVAVYTIQGFLPALAWGSVFAIATWPLYTRACNKWPHAASG 99

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
           T L ++ T ++  LF++PL  +    + E +  +  V  A ++G+PVP  +  +P G  A
Sbjct: 100 TLLPLLFTAAMALLFVIPLTLVTLEAVGEAQSALEWVSHAREYGVPVPDAIHRLPFGSSA 159

Query: 120 -SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            S+ W  HLS P+ L  +                    G           F I+ LFF Y
Sbjct: 160 ISKWWEAHLSDPRDLSGMLGNLDSKG-----VAVTRAVGSQVAHRATLFCFSILTLFFLY 214

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +DG S+ +Q   +    F    + + R +   I  +  G+ ++ IGEGL+LG  Y  A  
Sbjct: 215 KDGLSVIRQCRVVSCRAFGKRGESVGRQIVASIHGSVQGLVLVGIGEGLLLGVVYVFAHA 274

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P     GVITA+ AMIP  A I+   VS+ +L++G+   A   F  GA+ +F  D  +RP
Sbjct: 275 PHPALFGVITAVAAMIPFCAMIAVGLVSLLILVQGSSVAAITTFCIGAVIIFTADHFIRP 334

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            L+GG  KLPFL    G++GG  T GL+GLFIGP  MA + ++W      
Sbjct: 335 ALIGGSTKLPFLWVLLGILGGAETWGLIGLFIGPAAMAALNLLWCRWAYG 384


>gi|134096432|ref|YP_001101507.1| hypothetical protein HEAR3279 [Herminiimonas arsenicoxydans]
 gi|133740335|emb|CAL63386.1| Conserved hypothetical protein, putative permease [Herminiimonas
           arsenicoxydans]
          Length = 369

 Score =  225 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 88/355 (24%), Positives = 156/355 (43%), Gaps = 6/355 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
            +M  P+   +  +  +I+ SL F   L  F+  V  A ++     P Y   + K  + S
Sbjct: 9   HSMNYPEIQQKTFLGLLIIFSLAFIGILLPFYGAVFWAAVLAILFSPFYRKLLIKMNQHS 68

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
              A+      + + I+PL+ +    + E   L + +           + +         
Sbjct: 69  NLAALATLGMCLVVVIIPLVLISISLVHEASALYANIRSGQIDFGVFFQKVISALPSWVV 128

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           S+L    L+   SL+          G +FI + A   G    ++ +S   M+  LFF  R
Sbjct: 129 SQLERFGLTDMTSLQAKLSNA-AVQGSEFITKQAISIGQNTFNFLVSFTIMLYILFFLLR 187

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  I+ ++      L   + + +   +   IR+T  G  I+A  +G + G A+W  GV 
Sbjct: 188 DGDRIATRIKQAAP-LNAEHKRLLFNNLTTAIRATVKGNIIVAAVQGALGGIAFWFLGVQ 246

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             +  GV+ A ++++P  GA + +  V+IY L+ G ++    L  +G + + +VD  LRP
Sbjct: 247 GALLWGVLMAFLSLLPAVGAALIWVPVAIYFLLTGAVWQGVTLIAFGVLVIGLVDNILRP 306

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            LVG   +LP        VGG+  +GL G  IGPV+ AL   +W+      ++ +
Sbjct: 307 MLVGKDTQLPDFVVLISTVGGMAWLGLNGFVIGPVIAALFISLWEIFSSGKQKQE 361


>gi|167566605|ref|ZP_02359521.1| Predicted permease PerM family protein [Burkholderia oklahomensis
           EO147]
 gi|167573685|ref|ZP_02366559.1| Predicted permease PerM family protein [Burkholderia oklahomensis
           C6786]
          Length = 352

 Score =  225 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 67/349 (19%), Positives = 139/349 (39%), Gaps = 3/349 (0%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           ++  + Q     ++  + +   + L  FF  +    I+     P+     ++  +     
Sbjct: 2   DSGNDHQKFFHLLLFVVTVGLCWILTPFFGAIFWGTILAILFQPVQRWLAARFGKRRNLA 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A++    ++ + I+PL F+    + E+  +  ++     +     + +           L
Sbjct: 62  ALVTLSLIILIVILPLAFVAGTLVQEITYVYQQIKTMQPNMTQYFQDIMHALPTSVHRVL 121

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               L+   S++             F+   A   G     + +S   M+  +FF  RDG 
Sbjct: 122 HNYGLTDIASIQKKLTD-GAAAISQFVATQALSIGQNTFQFVVSFGVMLYLVFFLLRDGG 180

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I +++      L   + + +      V+R+T  G   +A  +G + G  +W+ G+   +
Sbjct: 181 EIGRRVRRALP-LAEDHKQHLLTKFTTVVRATVKGNIAVAAVQGALGGLIFWILGIEGVI 239

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             G + A ++++P  GA + +   + YL + G I+    L  +    + +VD  LRP LV
Sbjct: 240 LWGALMAFLSLLPAIGAGLVWVPAAGYLAVTGQIWKCVILVAFCVGVIGLVDNLLRPILV 299

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           G   K+P        +GG+   G+ G  IGP++ AL    W     A +
Sbjct: 300 GKDTKMPDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIFARAEQ 348


>gi|94309527|ref|YP_582737.1| hypothetical protein Rmet_0582 [Cupriavidus metallidurans CH34]
 gi|93353379|gb|ABF07468.1| conserved hypothetical protein; putative membrane protein
           [Cupriavidus metallidurans CH34]
          Length = 367

 Score =  225 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 78/354 (22%), Positives = 145/354 (40%), Gaps = 7/354 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M    L  +    + ++ +I  SL  L  F   +L   I+ ++SW  Y+           
Sbjct: 1   MSSGQLIEKLAAVFALIVLIGGSLLVLAPFATALLWGAILAYSSWHPYTVLTRWLGNRRG 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMW 118
             A+I  +    + + P ++        + EL + V    +HGIP +P WLS +P  G  
Sbjct: 61  LAALICVLIATVIVLGPFVYAGASFSAHIDELTALVNRYTEHGIPQLPDWLSSLPFVGPQ 120

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
               W K ++            +   G   +       G       LSI+      FFFY
Sbjct: 121 IESAWNKVITADSETVASLRKLIAPVGHALLGA-GLSIGAGLGQLALSIVLA----FFFY 175

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
             G      +      +       +  +    ++    G+   A  + ++ G  +W+AGV
Sbjct: 176 TGGELAVDWVRGGMRRVSGDRADHLLSLAGSTVKGVVYGVLGTAFVQAVLAGIGFWIAGV 235

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P    LG IT  ++++P G P+++   +++L   G    A  + +WGA  + + D  ++P
Sbjct: 236 PGAAILGFITFFLSVVPMGPPLAWIPAALWLYHTGETGWAIFMVVWGAAVVGMADNVIKP 295

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            L+     LP +    G++GG    G LG+FIGP ++A+   + ++  +  +E 
Sbjct: 296 LLISKGTGLPLIWIMMGVLGGALAFGFLGVFIGPTVLAVAYALLRDWTIGNQER 349


>gi|53716720|ref|YP_105073.1| hypothetical protein BMAA0253 [Burkholderia mallei ATCC 23344]
 gi|67643155|ref|ZP_00441903.1| putative membrane protein [Burkholderia mallei GB8 horse 4]
 gi|121597560|ref|YP_991032.1| hypothetical protein BMASAVP1_1436 [Burkholderia mallei SAVP1]
 gi|124382408|ref|YP_001025433.1| hypothetical protein BMA10229_1633 [Burkholderia mallei NCTC 10229]
 gi|126442642|ref|YP_001063635.1| hypothetical protein BURPS668_A2642 [Burkholderia pseudomallei 668]
 gi|126446184|ref|YP_001077494.1| hypothetical protein BMA10247_A0289 [Burkholderia mallei NCTC
           10247]
 gi|126456863|ref|YP_001076534.1| hypothetical protein BURPS1106A_A2503 [Burkholderia pseudomallei
           1106a]
 gi|134278524|ref|ZP_01765238.1| putative membrane protein [Burkholderia pseudomallei 305]
 gi|167002310|ref|ZP_02268100.1| putative membrane protein [Burkholderia mallei PRL-20]
 gi|167724720|ref|ZP_02407956.1| Predicted permease PerM family protein [Burkholderia pseudomallei
           DM98]
 gi|167743670|ref|ZP_02416444.1| Predicted permease PerM family protein [Burkholderia pseudomallei
           14]
 gi|167820858|ref|ZP_02452538.1| Predicted permease PerM family protein [Burkholderia pseudomallei
           91]
 gi|167829215|ref|ZP_02460686.1| Predicted permease PerM family protein [Burkholderia pseudomallei
           9]
 gi|167899287|ref|ZP_02486688.1| Predicted permease PerM family protein [Burkholderia pseudomallei
           7894]
 gi|167907623|ref|ZP_02494828.1| Predicted permease PerM family protein [Burkholderia pseudomallei
           NCTC 13177]
 gi|167915960|ref|ZP_02503051.1| Predicted permease PerM family protein [Burkholderia pseudomallei
           112]
 gi|167923807|ref|ZP_02510898.1| Predicted permease PerM family protein [Burkholderia pseudomallei
           BCC215]
 gi|217422033|ref|ZP_03453536.1| putative membrane protein [Burkholderia pseudomallei 576]
 gi|226195553|ref|ZP_03791140.1| putative membrane protein [Burkholderia pseudomallei Pakistan 9]
 gi|237508341|ref|ZP_04521056.1| conserved hypothetical protein [Burkholderia pseudomallei MSHR346]
 gi|242313791|ref|ZP_04812808.1| putative membrane protein [Burkholderia pseudomallei 1106b]
 gi|254177421|ref|ZP_04884077.1| putative membrane protein [Burkholderia mallei ATCC 10399]
 gi|254184824|ref|ZP_04891413.1| putative membrane protein [Burkholderia pseudomallei 1655]
 gi|254186044|ref|ZP_04892562.1| putative membrane protein [Burkholderia pseudomallei Pasteur 52237]
 gi|254194276|ref|ZP_04900708.1| putative membrane protein [Burkholderia pseudomallei S13]
 gi|254203008|ref|ZP_04909370.1| putative membrane protein [Burkholderia mallei FMH]
 gi|254208340|ref|ZP_04914689.1| putative membrane protein [Burkholderia mallei JHU]
 gi|254263546|ref|ZP_04954411.1| putative membrane protein [Burkholderia pseudomallei 1710a]
 gi|254301103|ref|ZP_04968547.1| putative membrane protein [Burkholderia pseudomallei 406e]
 gi|52422690|gb|AAU46260.1| putative membrane protein [Burkholderia mallei ATCC 23344]
 gi|121225358|gb|ABM48889.1| putative membrane protein [Burkholderia mallei SAVP1]
 gi|126222133|gb|ABN85638.1| putative membrane protein [Burkholderia pseudomallei 668]
 gi|126230631|gb|ABN94044.1| putative membrane protein [Burkholderia pseudomallei 1106a]
 gi|126239038|gb|ABO02150.1| putative membrane protein [Burkholderia mallei NCTC 10247]
 gi|134250308|gb|EBA50388.1| putative membrane protein [Burkholderia pseudomallei 305]
 gi|147746053|gb|EDK53131.1| putative membrane protein [Burkholderia mallei FMH]
 gi|147751027|gb|EDK58095.1| putative membrane protein [Burkholderia mallei JHU]
 gi|157811370|gb|EDO88540.1| putative membrane protein [Burkholderia pseudomallei 406e]
 gi|157933730|gb|EDO89400.1| putative membrane protein [Burkholderia pseudomallei Pasteur 52237]
 gi|160698461|gb|EDP88431.1| putative membrane protein [Burkholderia mallei ATCC 10399]
 gi|169651027|gb|EDS83720.1| putative membrane protein [Burkholderia pseudomallei S13]
 gi|184215416|gb|EDU12397.1| putative membrane protein [Burkholderia pseudomallei 1655]
 gi|217394264|gb|EEC34283.1| putative membrane protein [Burkholderia pseudomallei 576]
 gi|225932038|gb|EEH28038.1| putative membrane protein [Burkholderia pseudomallei Pakistan 9]
 gi|235000546|gb|EEP49970.1| conserved hypothetical protein [Burkholderia pseudomallei MSHR346]
 gi|238524422|gb|EEP87855.1| putative membrane protein [Burkholderia mallei GB8 horse 4]
 gi|242137030|gb|EES23433.1| putative membrane protein [Burkholderia pseudomallei 1106b]
 gi|243061963|gb|EES44149.1| putative membrane protein [Burkholderia mallei PRL-20]
 gi|254214548|gb|EET03933.1| putative membrane protein [Burkholderia pseudomallei 1710a]
 gi|261826786|gb|ABN00128.2| putative membrane protein [Burkholderia mallei NCTC 10229]
          Length = 352

 Score =  225 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 65/353 (18%), Positives = 137/353 (38%), Gaps = 3/353 (0%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           ++  + Q     +++ + +   + L  FF  +    I+     P+     ++  +     
Sbjct: 2   DSGNDHQKFFHLLLLVVTVGLCWILTPFFGAIFWGTILAILFQPVQRWLAARFGKRRNLA 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A++    ++ + I+PL F+    + E+     ++     +     +             L
Sbjct: 62  ALVTLSLIILIVILPLAFVTATLVQEIAYAYQQIKTMQPNMTQYFQEFMHALPSSVHRVL 121

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               L+    ++             F+   A   G     + +S   M+  +FF  RDG 
Sbjct: 122 HNYGLTDIAGIQKKLTD-GAAAISQFVAAQALSIGQNTFQFVVSFGVMLYLVFFLLRDGG 180

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I +++      L   + + +      V+R+T  G   +A  +G + G  +W+ G+   +
Sbjct: 181 EIGRRVRRALP-LDEEHKQHLLTKFTTVVRATVKGNIAVAAVQGALGGLIFWILGIEGVI 239

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             G + A ++++P  GA + +   + Y  + G I+    L  +    + +VD  LRP LV
Sbjct: 240 LWGALMAFLSLLPAIGAGLVWVPAAGYFAVTGQIWKCVILVAFCVGVIGLVDNLLRPILV 299

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G   K+P        +GG+   G+ G  IGP++ AL    W       + + E
Sbjct: 300 GKDTKMPDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIFARTEQTDWE 352


>gi|221067315|ref|ZP_03543420.1| protein of unknown function UPF0118 [Comamonas testosteroni KF-1]
 gi|220712338|gb|EED67706.1| protein of unknown function UPF0118 [Comamonas testosteroni KF-1]
          Length = 391

 Score =  225 bits (574), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 71/357 (19%), Positives = 144/357 (40%), Gaps = 5/357 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +   +     +++ +       L+ +   +   ++      P++   + +     T  A+
Sbjct: 4   LPLHKRAFILLLIAVTAGFGLVLEEYAVAIFWGVVFAIVFAPLHRKLLMRMPNRPTLAAL 63

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELW 123
              +  + + I+PL  +    + E   +  +V   N   G  V +  + +P   W +   
Sbjct: 64  ATLLISLVMVILPLSLIGLSLIKETSAIYDQVSSGNLSAGSYVEQIFNALP--SWLTPWM 121

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            K             + +           A   G   L + +    M+  +FF  RDG  
Sbjct: 122 EKLHLGTLEEIQAKLSNIALQASKLAATKAVGLGQNTLGFVVGFGVMLYLIFFLLRDGKE 181

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  ++ +    L P + ++++     VIR+T  G   +A  +G + G  +W+ G+   V 
Sbjct: 182 LVARIWA-ATPLAPEHKRELATKFITVIRATVKGNLAVAAAQGALGGLIFWILGIQGAVL 240

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
             V+ A ++++P  GA + +  V+IY L  G I     L  +G + + +VD  LRP LVG
Sbjct: 241 WAVVMAFLSLLPAVGAGLVWGPVAIYFLATGAITKGLILAAYGVLVIGLVDNVLRPLLVG 300

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              K+P        +GG+   GL G  +GP + AL    W+       + +E+++  
Sbjct: 301 KDTKMPDYVVLISTLGGMALFGLSGFVLGPAIAALFMAAWELFATMQLQVEEQLNRE 357


>gi|296112637|ref|YP_003626575.1| hypothetical protein MCR_0410 [Moraxella catarrhalis RH4]
 gi|295920331|gb|ADG60682.1| conserved hypothetical protein [Moraxella catarrhalis RH4]
 gi|326560897|gb|EGE11262.1| hypothetical protein E9G_03549 [Moraxella catarrhalis 7169]
 gi|326563867|gb|EGE14118.1| hypothetical protein E9M_02983 [Moraxella catarrhalis 46P47B1]
 gi|326566876|gb|EGE17015.1| hypothetical protein E9K_01168 [Moraxella catarrhalis 103P14B1]
 gi|326569796|gb|EGE19846.1| hypothetical protein E9U_05771 [Moraxella catarrhalis BC8]
 gi|326571292|gb|EGE21314.1| hypothetical protein E9Q_00168 [Moraxella catarrhalis BC1]
 gi|326571600|gb|EGE21615.1| hypothetical protein E9S_03234 [Moraxella catarrhalis BC7]
 gi|326575122|gb|EGE25050.1| hypothetical protein E9W_03963 [Moraxella catarrhalis CO72]
 gi|326576792|gb|EGE26699.1| hypothetical protein E9Y_02270 [Moraxella catarrhalis 101P30B1]
 gi|326577531|gb|EGE27408.1| hypothetical protein EA1_02057 [Moraxella catarrhalis O35E]
          Length = 390

 Score =  225 bits (574), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 86/332 (25%), Positives = 162/332 (48%), Gaps = 7/332 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
               ++ F  P L A I+ + ++PIY+ F +K   S +F A + T  +  +  VPL+   
Sbjct: 27  CFKVVRFFIVPALWAGILAYVTFPIYTFFHTKVRLSPSFSAFLMTFCISLMIGVPLIVGV 86

Query: 83  YYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPG-GMWASELWTKHLSHPQSLKILSETF 140
           +Y   E+   V  V+   Q G + +P  + D+P  G    +   +   +P++       +
Sbjct: 87  FYLQHEVLSFVGMVIRRLQAGYLDLPSQIKDLPVIGQTIKDTLWEINKNPETTMEAVRAW 146

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           ++++       +        L     +   ++ LFFFYRDG S+ +Q+     ++     
Sbjct: 147 VQSHLY-----YGKMAFDAVLKNLAKLGMALMTLFFFYRDGKSLVRQIRQAMRNIIGDRI 201

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
                 V    ++   G+ + A+ + ++ G  Y     P+ + L +IT ++A+IP G P 
Sbjct: 202 DDYIDSVGATTQAVVYGIGLTALAQAILAGMGYAFTNAPNPILLTLITFVVALIPFGTPF 261

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
           ++  V+++LL +G+      L LWG + +  VD  +RP ++ G  K+PF+  F G++GG+
Sbjct: 262 AWGGVAVWLLSQGHTTEGIGLGLWGILVISWVDNLIRPIVISGATKIPFIIIFIGVLGGL 321

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              G +GLFIGPV++A+   +W+E I   K  
Sbjct: 322 TAFGFVGLFIGPVVLAIGLAVWREWISQHKNE 353


>gi|126665221|ref|ZP_01736204.1| Predicted permease PerM family protein [Marinobacter sp. ELB17]
 gi|126630591|gb|EBA01206.1| Predicted permease PerM family protein [Marinobacter sp. ELB17]
          Length = 378

 Score =  225 bits (574), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 79/344 (22%), Positives = 143/344 (41%), Gaps = 5/344 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
                M++ + +  +  +K FF P+  A+ I     P+      +  +     A+I    
Sbjct: 8   RAFLAMLVGVSVAFILLMKPFFGPIFWAVAIALIFHPVQLKLARRFGDRPNTNALITLFL 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            M + ++P+L L    + E   L  K+   +   +    ++  +     A + +      
Sbjct: 68  CMVIVVIPVLLLVASLVAEGIGLYQKIQTGD---VRPGEYIDQVNQSFPAIQSFLAQFDI 124

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S        L  +G  F+ + A   G     + L +  M+   FF  RDG S+ + L 
Sbjct: 125 SFSELRDRTVNLVVSGSQFLGKQALGLGQNTFQFFLGLALMVYLAFFLLRDGVSLVELLI 184

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                L     + +     +V R+T  G  +IAI +G + G  +W+ G+   +  GV+ A
Sbjct: 185 RALP-LGDERERLLFAKFAEVTRATVKGNLLIAIIQGAMGGLIFWILGIEGALLWGVVMA 243

Query: 250 IMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I++++P  GA + +   +IYL   G++  A  L  +G + + + D  LRP LVG   KLP
Sbjct: 244 IVSLLPAVGAALVWVPAAIYLAAVGDVVQALILTAFGVVVIGLADNVLRPILVGRDTKLP 303

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
                   +GG+   G+ G  +GP++ AL    W   I      
Sbjct: 304 DYIVLLSTLGGLAMFGINGFVMGPLVAALFNAFWGIFIREFSHE 347


>gi|241763379|ref|ZP_04761434.1| protein of unknown function UPF0118 [Acidovorax delafieldii 2AN]
 gi|241367421|gb|EER61732.1| protein of unknown function UPF0118 [Acidovorax delafieldii 2AN]
          Length = 357

 Score =  225 bits (574), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 74/343 (21%), Positives = 141/343 (41%), Gaps = 5/343 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
              L    +   ++  + L     L  F   V   +++     P +   + +   S    
Sbjct: 2   HPTLFQNRVFLILLTLVTLAFGAILWQFHGAVFWGVVLAILFTPFHRKLLRRMPGSPNLA 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASE 121
           A+      + + I+P+  +    + E   +  ++       G  + + L  +P   WA+ 
Sbjct: 62  ALATLGLCLVIVILPMTLISLSLVQEATGIYDRLKSGQLNFGQYLQQILDAMPA--WAAG 119

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L  +             + +      F    A   G   L++ +    M+  LFF  RDG
Sbjct: 120 LLDRFNLTTLGELQEKLSSVAVQASQFFATKALSIGQNTLEFVVGFGVMLYLLFFLLRDG 179

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            +++ +++     L   + ++++     VIR+T  G  ++A  +G + G  +W+ G+   
Sbjct: 180 SALAARINR-ATPLDTEHKRQLASKFTTVIRATVKGNIVVAASQGALGGLIFWILGIQGP 238

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           V  GV  A ++++P  GA + +  V++Y L  G ++    L L+G   + +VD  LRP L
Sbjct: 239 VLWGVAMAFLSLLPAVGAGLVWGPVALYFLATGAVWQGVVLALYGVGVIGLVDNILRPLL 298

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           VG   K+P        +GG+   GL G  IGP + AL    W 
Sbjct: 299 VGKDTKMPDYVVLISTLGGMALFGLTGFVIGPAIAALFIASWD 341


>gi|78063136|ref|YP_373044.1| hypothetical protein Bcep18194_B2289 [Burkholderia sp. 383]
 gi|77971021|gb|ABB12400.1| protein of unknown function UPF0118 [Burkholderia sp. 383]
          Length = 353

 Score =  225 bits (574), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 68/350 (19%), Positives = 139/350 (39%), Gaps = 5/350 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E+  + Q    +++  + +   + L  F   V    I+     P+     ++  +     
Sbjct: 5   ESGHDHQKFFYFLLAAVTVGLCWILAPFSGAVFWGTILAILFQPVQRWLAARFGKRRNLA 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWASE 121
           A++    ++ + I+PL+F+    + E+  +  ++  A  +        +  +P       
Sbjct: 65  ALVTLSLIVLIVILPLVFVAATLVQEIAYVYQEIKTAQPNYSQYFQDIIHALPSS--IQH 122

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L  K+            T             A   G     + +S   M+  +FF  RDG
Sbjct: 123 LLQKYGLSNLPGIQKKLTDGAAQISQLAATQALSIGQNTFQFVVSFGVMLYMVFFLLRDG 182

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I +++      L   +   +      V+R+T  G   +A+ +G + G  +W+ G+   
Sbjct: 183 GEIGRRVRRALP-LDDEHKNLLLAKFTTVVRATVKGNIAVALVQGALGGLIFWILGIEGV 241

Query: 242 VALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           V  G + A ++++P  GA + +   ++Y L+ G ++    L  +    + +VD  LRP L
Sbjct: 242 VLWGALMAFLSLLPAIGASLVWVPAALYFLMIGALWKCAILVAFCVGVIGLVDNLLRPIL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           VG   K+P        +GG+   G+ G  IGP++ AL    W     + +
Sbjct: 302 VGKDTKMPDWVVLISTLGGMALFGITGFVIGPLVAALFMASWDIYARSEQ 351


>gi|238782558|ref|ZP_04626589.1| hypothetical protein yberc0001_22080 [Yersinia bercovieri ATCC
           43970]
 gi|238716485|gb|EEQ08466.1| hypothetical protein yberc0001_22080 [Yersinia bercovieri ATCC
           43970]
          Length = 367

 Score =  225 bits (574), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 139/346 (40%), Gaps = 6/346 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             I+ +I+ S + ++ F      A ++   +WP+               A+I T+ ++ L
Sbjct: 19  IFILIMIIASFWVVQPFIMGFAWAGMVVIATWPLLIRLQKILWGKRWLAALIMTLLLVLL 78

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           F++P+  L    +     L+      +   +P   WL  +P  G      W   ++   +
Sbjct: 79  FVIPIALLVSSLVQNSGPLIQWASSPSNLRMPDVTWLQSVPMVGNKLYSSWHTLIAGGGN 138

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             I            ++   A+  G   +   L ++F ++  F     G  +   +    
Sbjct: 139 AIIAKVQPYVGAAATWLVAQAAHIGYFLIHLALMVLFSVLLYF----HGEQVGLGIRHFA 194

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                     +  +  K IR+  LG+ + A+ + ++ G    +AG+       V+  I  
Sbjct: 195 VRAADKRGDAVVVLAAKAIRAVALGVVVTALVQAVLGGIGLAIAGIQYATLFTVLMFICC 254

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +   G  +      I+L   G+    T L +W  I +  +D  LRP+L+     +P +  
Sbjct: 255 VAQLGPLLILVPAIIWLYWTGDTTWGTVLLVWSCI-VGTMDNVLRPYLIRMEADMPMILI 313

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G++GG+ + G++GLFIGPV++A+   +    +    E +E I+ 
Sbjct: 314 LSGVIGGLLSFGMIGLFIGPVVLAISYRLTAAWVSEAPEPEESITE 359


>gi|317402762|gb|EFV83307.1| exported protein [Achromobacter xylosoxidans C54]
          Length = 373

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 76/336 (22%), Positives = 137/336 (40%), Gaps = 8/336 (2%)

Query: 13  RWMIMFIILVSL---YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           R  ++ +++VS+   + L  F+  V    I+     P+    + +        A+I    
Sbjct: 4   RTFLLLLVVVSIAFGWLLWPFYGAVFWGAILAILFAPLQRRLVPRIGGRRNLAALITLAM 63

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLS 128
           V+ L I+PL+ +    + E   L   +       G    + +  +P      +L  +   
Sbjct: 64  VLLLVILPLVVISGSLVREGANLYQSIKSGQINFGAYFQQAMEALPPS--VHDLLARFDL 121

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                     +        F+   A   G     + +S   M+  LFF  RDG  ++Q++
Sbjct: 122 ADIPSLQEKLSAGAMQASQFLATQALSIGQDTFQFVVSFAIMLYLLFFLLRDGPQLAQRV 181

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 L   +   + R    V+R+T  G   +A  +G + G  + + G+   +  GVI 
Sbjct: 182 KRAVP-LSETHKHHLFRKFTTVVRATVKGNIAVAASQGALGGIIFSILGIQGALLWGVIM 240

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             ++++P  GA + +  V+IY L+ G       L  +G + + +VD  LRP LVG   K+
Sbjct: 241 GFLSLLPAVGAGLIWAPVAIYFLLTGATIKGVVLIAFGVLVIGMVDNVLRPILVGKDTKM 300

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           P        +GG+   GL G  IGP++ AL    W 
Sbjct: 301 PDYVVLISTLGGMALFGLNGFVIGPLIAALFMASWD 336


>gi|113866712|ref|YP_725201.1| membrane spanning protein/permease [Ralstonia eutropha H16]
 gi|113525488|emb|CAJ91833.1| hypothetical membrane spanning protein/Predictedpermease [Ralstonia
           eutropha H16]
          Length = 385

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 79/354 (22%), Positives = 144/354 (40%), Gaps = 7/354 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M    L  +    + ++ +I  SL  L  F   +L   I+ F+SW  Y+          +
Sbjct: 1   MSSGQLIEKIAAVFALIVLIGGSLLVLAPFTTALLWGAILAFSSWYPYTVLSRWLGNRRS 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMW 118
             A+I  +    + + P ++        + EL + V    +HGIP +P WLS +P  G +
Sbjct: 61  LAALICVLLATVVVLGPFVYAGASFSAHLDELSALVDRYREHGIPQLPAWLSSLPYVGSY 120

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
               W   ++    +       +   G   +       G       LSII      FFFY
Sbjct: 121 LQNSWNSVINADSEMVANLRKLIAPVGHMLLGA-GLSIGAGLGQLALSIILA----FFFY 175

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
             G      L +    +       +  +    ++    G+   A  + ++ G   W+AGV
Sbjct: 176 TGGELAIAWLRAGMHRIAGERADHLLELAGSTVKGVVYGVLGTAFIQAVLAGIGLWIAGV 235

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P    LG +T  +++IP G P+ +   +++L   G    A  L +WG   + + D  ++P
Sbjct: 236 PGAAILGFVTFFLSVIPVGPPLVWLPAALWLYHTGATGWAIFLVVWGVGVVSMADNIVKP 295

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            L+     +P +    G++GG    G LG+FIGP L+A+   + ++  +  +  
Sbjct: 296 LLISKGTGMPLIWIMLGVLGGALAFGFLGVFIGPTLLAVAYALLRDWTIGSQAE 349


>gi|298487561|ref|ZP_07005603.1| membrane protein, putative [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298157945|gb|EFH99023.1| membrane protein, putative [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 354

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 81/343 (23%), Positives = 152/343 (44%), Gaps = 4/343 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M ET L  + ++  +++ + +  ++ L  F+  V  A+I+G    P+      K   S  
Sbjct: 1   MNETTLQYKTLI-MLLVLVTIAFIWILLPFYGAVFWAVILGIIFAPVQRRLQIKFNWSRN 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             ++      + + I+P++ +    + E   L   V               D+      +
Sbjct: 60  LTSLCTLTICLVIAILPVIVISALLVQEGTTLYKNVESGQLDIAGYLAEFKDLLPHSIQA 119

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L    +   + L+          G  ++   A  FG    D+ +S+  M+  L+FF RD
Sbjct: 120 LLDRLGMGDLEGLRDKITK-GAMQGSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRD 178

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  + +++ +    L     +++     +V+R+T  G  ++A+ +G + G  +W   +PS
Sbjct: 179 GQELVRKIRTAFP-LGEQQKRRLQLKFTRVVRATVKGNVVVAVTQGALGGFIFWALDIPS 237

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +   VI A ++++P  GA I +  V++Y L+ G I+    L L+G   + +VD  LRP 
Sbjct: 238 ALLWAVIMAFLSLLPAVGAGIVWAPVAVYFLLSGMIWQGVVLGLFGVFVIGLVDNVLRPI 297

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           LVG   K+P        +GG+   GL G  IGP++ AL    W
Sbjct: 298 LVGKDTKMPDYLILISTLGGMSVFGLNGFVIGPLVAALFISSW 340


>gi|229589626|ref|YP_002871745.1| hypothetical protein PFLU2129 [Pseudomonas fluorescens SBW25]
 gi|229361492|emb|CAY48368.1| putative membrane protein [Pseudomonas fluorescens SBW25]
          Length = 355

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 75/334 (22%), Positives = 143/334 (42%), Gaps = 3/334 (0%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           + +  ++ L  F+  V  A+I+G    P+      +   +  F ++    + + + I+P+
Sbjct: 18  VTIAFIWILLPFYGAVFWAVILGIIFAPMQRRLQQRFGWNRNFTSLATLSACLIIAILPV 77

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           +      + E   L   V               ++    +   L    + + + L+    
Sbjct: 78  IITSALLVQEGATLYKNVESGKLDVAGYIEQFKNVLPPYFQHLLDRFGMGNLEGLREKIV 137

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                 G  F    A  FG    D+ +S   M+  LFF  RDG  + +++ +    L   
Sbjct: 138 K-SAMQGSQFFATQAFSFGQGTFDFLVSFFIMLYLLFFLLRDGPELVRKVRTAVP-LAEP 195

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GG 257
             +++     +V+R+T  G  ++A+ +G + G  +W   +PS +   V+ A ++++P  G
Sbjct: 196 QKRRLQLKFNRVVRATVKGNVLVAVTQGALGGLIFWFLDIPSALLWAVLMAFLSLLPAVG 255

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
           A I +  V+ Y L+ G+I+    L L+G   + +VD  LRP LVG   K+P        +
Sbjct: 256 AGIVWGPVAAYFLLSGSIWQGVVLALFGVFVIGLVDNVLRPILVGKDTKMPDYLILISTL 315

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           GG+   GL G  IGP++ AL    W   + +   
Sbjct: 316 GGLSVFGLNGFVIGPLVAALFMSSWALFVESKPR 349


>gi|152988070|ref|YP_001347913.1| hypothetical protein PSPA7_2549 [Pseudomonas aeruginosa PA7]
 gi|150963228|gb|ABR85253.1| membrane protein, putative [Pseudomonas aeruginosa PA7]
          Length = 352

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 70/330 (21%), Positives = 134/330 (40%), Gaps = 5/330 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + L  F+  V    I+     P+      + ++     A+I     + + I+P++F+   
Sbjct: 24  WLLLPFYGAVFWGTILAIIFAPVQRRLQVRLKDRKNLAALITLSICVLIVIIPVIFIAGS 83

Query: 85  GMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
            + E   +  +V          + + ++ +P      +   +      +      + +  
Sbjct: 84  LVQEGASVYQRVKSGELNFAAYLQQAVAALPPS--VHQWLERFDLTNLASLQEKLSSVAM 141

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
                +   A   G    D+ +S   M+  LFF  RDG  + +++      L   +   +
Sbjct: 142 QASQVVATKAFSIGQNTFDFVISFGIMLYLLFFLLRDGRVLGRRIKQAVP-LSQEHKHHL 200

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISF 262
                 VIR+T  G   +A  +G + G  +WL G+   +  G + A ++++P  GA + +
Sbjct: 201 FAKFTTVIRATVKGNIAVAATQGALGGLIFWLLGIEGALLWGTLMAFLSLLPAIGAALIW 260

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             V+ Y L+ G I+    L L+  + + +VD  LRP LVG   K+P        +GG+  
Sbjct: 261 APVAAYFLLTGAIWQGVVLILFCVVVIGLVDNILRPILVGKDTKMPDYVVLISTLGGMAL 320

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            GL G  IGP++ AL    W       +E 
Sbjct: 321 FGLNGFVIGPLIAALFMASWDLFTGREEEP 350


>gi|37526518|ref|NP_929862.1| putative inner membrane protein [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36785949|emb|CAE15001.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 369

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 70/354 (19%), Positives = 140/354 (39%), Gaps = 6/354 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L         +  +I+ S + +K F    + A ++   +WP+                 I
Sbjct: 10  LPKLLFTLIFLSLLIVTSFWVIKPFIFGFVWAGMVVIATWPLLEKLQDSLWGKRWIAVSI 69

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWT 124
            T+ ++ LF++P+  L    +     L+      +   IP   WL+ IP  G      W 
Sbjct: 70  MTLLLILLFVIPIALLVSSLLENSAPLIQWTKSPSHFQIPTMTWLNSIPLVGDKLYSAWN 129

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             ++   ++ I            +    A+  G      CL ++F ++     Y  G  +
Sbjct: 130 SLITDGGNVLIAKVQPYVGEAATWFFTQAANAGRFVFHLCLMVLFSVL----LYLKGEQV 185

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           +  +      L          +  + IR+  LG+ + A+ + ++ G    ++G+P    L
Sbjct: 186 TMSIRHFAIRLANKRGDAAILLAAQSIRAVALGVVVTALVQAIIGGLGLAVSGIPYATLL 245

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            V+  +  +   G  +       +L   G+    T L +W  I +  +D  LRPFL+   
Sbjct: 246 TVLMFVCCVAQLGPLLILVPAVAWLYWTGDTTWGTVLLVWSCI-VTTMDGFLRPFLIRLG 304

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             LP      G++GG+ + G++GLFIGPV++A+   +    +  + E +  ++ 
Sbjct: 305 ADLPMALILIGVIGGILSFGMIGLFIGPVVLAVAYRLLIAWMNEVPEPENDLAE 358


>gi|49611311|emb|CAG74758.1| putative membrane protein [Pectobacterium atrosepticum SCRI1043]
          Length = 396

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 74/347 (21%), Positives = 139/347 (40%), Gaps = 6/347 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             I  +I+   + ++ F      A ++   +WP+   F +      +   ++ T+ ++ L
Sbjct: 46  VFITIMIIACFWVVQPFILGFAWACMVVIATWPMLIKFQALLWGRRSLAVLVMTLLLILL 105

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           F+VP+  L    +     L+S          P   WL+ IP  G      W   L    S
Sbjct: 106 FVVPIAVLVSSVIDNSSALMSWGSRQENLSPPTLEWLTSIPLVGEKLFNSWQALLQSGGS 165

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                          ++   A+  G   +   L +IF  +     Y  G ++++ +    
Sbjct: 166 GLFAKVQPYFGKTATWLVAQAAHVGRFLMHCSLMLIFSAL----LYYKGEAVAKAVRHFA 221

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + AI + ++ G    L+G+P    L V+  +  
Sbjct: 222 IRLGRERGDAAVILAAQSIRAVALGVVVTAIVQSVLGGIGLGLSGIPYTTLLTVLMFLCC 281

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +   G  +      I+L   G+    T L +W    +  +D  +RP L+     LP L  
Sbjct: 282 LAQLGPLLVLIPAIIWLYWTGDNTWGTILLVWSC-VVGTIDNVIRPMLIRMGADLPMLLI 340

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             G++GG+   G++GLFIGPV++A+   +    +  I E +  +S N
Sbjct: 341 LSGVIGGLLAFGMIGLFIGPVVLAVSYRLLFAWMREIPEPQNLLSVN 387


>gi|330954547|gb|EGH54807.1| hypothetical protein PSYCIT7_24977 [Pseudomonas syringae Cit 7]
          Length = 356

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 77/322 (23%), Positives = 141/322 (43%), Gaps = 3/322 (0%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             ++ L  F+  V  A+I+G    P+      K   S    ++      + + I+P++ +
Sbjct: 21  AFIWILLPFYGAVFWAVILGIIFAPVQRKLQIKFNWSRNLTSLCTLTICLVIAILPVIVI 80

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E   L   V               D+      + L    +   + L+       
Sbjct: 81  SALLVQEGTTLYKNVETGQLDIAGYLAEFKDLLPHSIQALLDRLGMGDLEGLRDKIAK-G 139

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
              G  ++   A  FG    D+ +S+  M+  L+FF RDG  + +++ +    L     +
Sbjct: 140 AMQGSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRDGQELVRKIRTAFP-LGEQQKR 198

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPI 260
           ++     +V+R+T  G  ++A+ +G + G  +W+  +PS +   VI A ++++P  GA I
Sbjct: 199 RLQLKFTRVVRATVKGNVVVAVTQGALGGFIFWVLDIPSALLWAVIMAFLSLLPAVGAGI 258

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +  V++Y L+ G I+    L L+G   + +VD  LRP LVG   K+P        +GG+
Sbjct: 259 VWAPVAVYFLLSGMIWQGVVLGLFGVFVIGLVDNVLRPILVGKDTKMPDYLILISTLGGM 318

Query: 321 RTMGLLGLFIGPVLMALIAVIW 342
              GL G  IGP++ AL    W
Sbjct: 319 SVFGLNGFVIGPLVAALFISSW 340


>gi|330972921|gb|EGH72987.1| hypothetical protein PSYAR_20762 [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 354

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 78/322 (24%), Positives = 142/322 (44%), Gaps = 3/322 (0%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             ++ L  F+  V  A+I+G    P+      K   S    ++      + + I+P++ +
Sbjct: 21  AFIWILLPFYGAVFWAVILGIIFAPVQRKLQIKFNWSRNLTSLCTLTICLVIAILPVIVI 80

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E   L   V               D+      + L    +   + L+       
Sbjct: 81  SALLVQEGTTLYKNVETGQLDIAGYLAEFKDLLPHSMQALLDRLGMGDLEGLRDKIAK-G 139

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
              G  ++   A  FG    D+ +S+  M+  L+FF RDG  + +++ +    L     +
Sbjct: 140 AMQGSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRDGQELVRKIRTAFP-LGEQQKR 198

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPI 260
           ++     +V+R+T  G  ++A+ +G + G  +W+  +PS +   VI A ++++P  GA I
Sbjct: 199 RLQLKFTRVVRATVKGNVVVAVTQGALGGFIFWVLDIPSALLWAVIMAFLSLLPAVGAGI 258

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +  V+IY L+ G I+    L L+G + + +VD  LRP LVG   K+P        +GG+
Sbjct: 259 VWAPVAIYFLLSGMIWQGVVLGLFGVLVIGLVDNVLRPILVGKDTKMPDYLILISTLGGM 318

Query: 321 RTMGLLGLFIGPVLMALIAVIW 342
              GL G  IGP++ AL    W
Sbjct: 319 SVFGLNGFVIGPLVAALFMSSW 340


>gi|167032838|ref|YP_001668069.1| hypothetical protein PputGB1_1830 [Pseudomonas putida GB-1]
 gi|166859326|gb|ABY97733.1| protein of unknown function UPF0118 [Pseudomonas putida GB-1]
          Length = 354

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 77/343 (22%), Positives = 149/343 (43%), Gaps = 4/343 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M ET L  + +   ++  + +   + L  ++  +  A+I+G    P+    + +      
Sbjct: 1   MNETALQNKALA-VLLALVTIAFFWILLPYYGAIFWAVILGILFAPLQRHLLIRFGRRRN 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A   T+  + + I+P++      + E   L  ++               D+       
Sbjct: 60  LAAAATTLVCLLVAILPVIITSALLVQEGATLYQRIESGQLDIAGYVEHGKDMLPAFAQH 119

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L    + +   L+     +  T G   +   A  FG    ++ +S   M+  LFFF R+
Sbjct: 120 GLDNMGMGNLDGLRDKITKW-ATQGSQALASQAFSFGQGTFEFVISFGIMMYLLFFFLRE 178

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +++++  L   L     +++     +V+R+T  G  ++AI +G + G  +W+  +PS
Sbjct: 179 GPEVARRV-RLAVPLPEHQKRRLQLKFNRVVRATVKGNVLVAITQGALGGLIFWVLDIPS 237

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +   V+ A ++++P  GA I +  V+ Y L+ G I     L  +G + + +VD  LRP 
Sbjct: 238 ALVWAVLMAFLSLLPAVGAGIVWAPVAAYFLLTGAILPGVILTAFGVLVIGLVDNLLRPI 297

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           LVG   ++P        +GG+   GL G  IGP++ AL    W
Sbjct: 298 LVGKDTRMPDYLILVSTLGGLAVFGLNGFVIGPLIAALFMSSW 340


>gi|289625440|ref|ZP_06458394.1| hypothetical protein PsyrpaN_09999 [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649278|ref|ZP_06480621.1| hypothetical protein Psyrpa2_16276 [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330866824|gb|EGH01533.1| hypothetical protein PSYAE_06090 [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 354

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 81/343 (23%), Positives = 152/343 (44%), Gaps = 4/343 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M ET L  + ++  +++ + +  ++ L  F+  V  A+I+G    P+      K   S  
Sbjct: 1   MNETTLQYKTLI-MLLVLVTIAFIWILLPFYGAVFWAVILGIIFAPVQRRLQIKFNWSRN 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             ++      + + I+P++ +    + E   L   V               D+      +
Sbjct: 60  LTSLCTLTICLVIAILPVIVISALLVQEGTTLYKNVETGQLDIAGYLAEFKDLLPHSIQA 119

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L    +   + L+          G  ++   A  FG    D+ +S+  M+  L+FF RD
Sbjct: 120 LLDRLGMGDLEGLRDKITK-GAMQGSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRD 178

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  + +++ +    L     +++     +V+R+T  G  ++A+ +G + G  +W   +PS
Sbjct: 179 GQELVRKIRTAFP-LGEQQKRRLQLKFTRVVRATVKGNVVVAVTQGALGGFIFWALDIPS 237

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +   VI A ++++P  GA I +  V++Y L+ G I+    L L+G   + +VD  LRP 
Sbjct: 238 ALLWAVIMAFLSLLPAVGAGIVWAPVAVYFLLSGMIWQGVVLGLFGVFVIGLVDNVLRPI 297

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           LVG   K+P        +GG+   GL G  IGP++ AL    W
Sbjct: 298 LVGKDTKMPDYLILISTLGGMSVFGLNGFVIGPLVAALFISSW 340


>gi|253989383|ref|YP_003040739.1| inner membrane protein [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253780833|emb|CAQ83995.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 369

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 70/354 (19%), Positives = 140/354 (39%), Gaps = 6/354 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L         +  +I+ S + +K F    + A ++   +WP+     +           I
Sbjct: 10  LPKLLFTLIFLSLLIVTSFWVMKPFILGFVWAGMVVIATWPLLEKLQNSLWGKRWLAVAI 69

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWT 124
            T+ ++ LF++P++ L    +     L++         +P   WLS IP  G      W 
Sbjct: 70  MTLLLILLFVIPIVLLVSSLLENSAPLIAWAKSPTNFQMPAMTWLSSIPLVGDKLYSGWN 129

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             ++   ++ I            +    A+  G       L ++F ++     Y  G  +
Sbjct: 130 SLITDGGNVLIAKVQPYIGEAATWFFTQAANAGRFVFHLALMVLFSVL----LYLKGEQV 185

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           +  +      L          +  + IR+  LG+ + A+ + ++ G    ++G+P    L
Sbjct: 186 TMSIRHFAVRLADKRGDAAILLAAQSIRAVALGVVVTALVQAIIGGIGLAVSGIPYATLL 245

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            V+  +  +   G  +       +L   G+    T L +W    +  +D  LRPFL+   
Sbjct: 246 TVLMFVCCVAQIGPLLILVPAVAWLYWTGDTTWGTALLVWSC-VVTTMDGFLRPFLIRLG 304

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             LP      G++GG+ + G++GLFIGPV++A+   +    +  I E K  ++ 
Sbjct: 305 ADLPMALILTGVIGGILSFGMIGLFIGPVVLAVAYRLLIAWMNEIPEPKNDLTE 358


>gi|261340952|ref|ZP_05968810.1| putative membrane protein [Enterobacter cancerogenus ATCC 35316]
 gi|288316812|gb|EFC55750.1| putative membrane protein [Enterobacter cancerogenus ATCC 35316]
          Length = 369

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 75/355 (21%), Positives = 145/355 (40%), Gaps = 6/355 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G    ++  +       L  +F+ +L A I+     P+ +   +   E +   + +   
Sbjct: 8   KGFFILILALVTWAFFDVLSPYFSAILWAAILTIIFNPVKNKLRTALGERNGLASFLTLC 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHL 127
            +  +  +PL  +     +E+  + +K+   N Q    V    + +P   WAS     H 
Sbjct: 68  IICLIVFIPLTVILSSLAIELNVVYTKLQQNNTQFPEVVAGVFNRLP--DWASGFLADHD 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +      +     G  ++   A   G     + +S   M+  LFF  +DG  + +Q
Sbjct: 126 LTNAAEIQKKLSDAALKGGQYLAGSAFLIGKGTFGFAISFGIMLYLLFFLLKDGPYLVRQ 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L     + +      V R+T  G  ++A+ +G + G A+ + G+   +  G +
Sbjct: 186 ILD-SLPLSDFAKQHLFAKFVGVSRATVKGTAVVAVVQGTLGGIAFAIVGIDGSILWGAL 244

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A ++++P  G+ I +   +IYL     I+    +  +  I + +VD  LRP LVG   K
Sbjct: 245 MAFLSLVPAVGSAIVWVPAAIYLFATHQIWQGLFIVGFFVIIVGLVDNILRPLLVGKDTK 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE-NKEKISSNF 360
           +P        +GG+   G+ G  IGP++ AL    W        E N E++ + F
Sbjct: 305 MPDYLILISTLGGMELYGINGFVIGPLIAALFIACWNLFSGRDHEGNAEELDAEF 359


>gi|170696533|ref|ZP_02887657.1| protein of unknown function UPF0118 [Burkholderia graminis C4D1M]
 gi|170138580|gb|EDT06784.1| protein of unknown function UPF0118 [Burkholderia graminis C4D1M]
          Length = 372

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 92/347 (26%), Positives = 175/347 (50%), Gaps = 5/347 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEESST 60
           E +   +     + + ++L++L+ ++ F   V  A ++    WP+             +T
Sbjct: 29  ERVKKQRAASLALYIGLVLLALWVVRDFLPVVGWAAVLAIALWPLLRKVEGSRWLTGRTT 88

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            +A + T+++  L ++P+       + E  +L      A ++GI +P ++  +P G   +
Sbjct: 89  LIAAVLTLAIALLVVLPVGVGIAQALREAHDLTDWFKAAQENGIAMPDFIHRLPFGAHQA 148

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E W +    P    +     +K      +      FG   +       FM++ LF  ++ 
Sbjct: 149 EAWWQAYLTP---PLRDSAAMKGLHSTTVVTLGRHFGARAVHAVTVFAFMLVTLFVIFQA 205

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +S  L    +  F     ++ + +   +R T  G+ ++ +GEG +LG AY++ G+P 
Sbjct: 206 GPRLSGALARGLQRGFGEDGAQLVQRMATAVRGTVSGLVVVGLGEGALLGVAYFVTGLPH 265

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L +ITAI AM+P  API+F+  +++L  +G++ +A  L ++G+I +F+ +  +RP L
Sbjct: 266 VALLALITAIAAMLPFCAPITFSLAALWLFSQGSVASAIGLLVFGSIVVFVAEHFVRPVL 325

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           +G   +LPFL   FG++GG  T GLLGLFIGP LM ++ V+W + + 
Sbjct: 326 IGSSTRLPFLLVLFGILGGAETFGLLGLFIGPALMTVLMVLWTDLVQ 372


>gi|71737762|ref|YP_275294.1| hypothetical protein PSPPH_3124 [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257485456|ref|ZP_05639497.1| hypothetical protein PsyrptA_19480 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|71558315|gb|AAZ37526.1| membrane protein, putative [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|320323803|gb|EFW79887.1| hypothetical protein PsgB076_15967 [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327942|gb|EFW83947.1| hypothetical protein PsgRace4_21198 [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330881164|gb|EGH15313.1| hypothetical protein Pgy4_19969 [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330889643|gb|EGH22304.1| hypothetical protein PSYMO_12697 [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330989763|gb|EGH87866.1| hypothetical protein PLA107_32388 [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331010711|gb|EGH90767.1| hypothetical protein PSYTB_13666 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 354

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 81/343 (23%), Positives = 152/343 (44%), Gaps = 4/343 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M ET L  + ++  +++ + +  ++ L  F+  V  A+I+G    P+      K   S  
Sbjct: 1   MNETTLQYKTLI-MLLVLVTIAFIWILLPFYGAVFWAVILGIIFAPVQRRLQIKFNWSRN 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             ++      + + I+P++ +    + E   L   V               D+      +
Sbjct: 60  LTSLCTLTICLVIAILPVIVISALLVQEGTTLYKNVETGQLDIAGYLAEFKDLLPHSIQA 119

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L    +   + L+          G  ++   A  FG    D+ +S+  M+  L+FF RD
Sbjct: 120 LLDRLGMGDLEGLRDKITK-GAMQGSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRD 178

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  + +++ +    L     +++     +V+R+T  G  ++A+ +G + G  +W   +PS
Sbjct: 179 GQELVRKIRTAFP-LGEQQKRRLQLKFTRVVRATVKGNVVVAVTQGALGGFIFWALDIPS 237

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +   VI A ++++P  GA I +  V++Y L+ G I+    L L+G   + +VD  LRP 
Sbjct: 238 ALLWAVIMAFLSLLPAVGAGIVWAPVAVYFLLSGMIWQGVVLGLFGVFVIGLVDNVLRPI 297

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           LVG   K+P        +GG+   GL G  IGP++ AL    W
Sbjct: 298 LVGKDTKMPDYLILISTLGGMSVFGLNGFVIGPLVAALFISSW 340


>gi|66046439|ref|YP_236280.1| hypothetical protein Psyr_3210 [Pseudomonas syringae pv. syringae
           B728a]
 gi|63257146|gb|AAY38242.1| Protein of unknown function UPF0118 [Pseudomonas syringae pv.
           syringae B728a]
          Length = 354

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 78/322 (24%), Positives = 142/322 (44%), Gaps = 3/322 (0%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             ++ L  F+  V  A+I+G    P+      K   S    ++      + + I+P++ +
Sbjct: 21  AFIWILLPFYGAVFWAVILGIIFAPVQRKLQIKFNWSRNLTSLCTLTICLVIAILPVIVI 80

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E   L   V               D+      + L    +   + L+       
Sbjct: 81  SALLVQEGTTLYKNVETGQLDIAGYLAEFKDLLPHSMQALLDRLGMGDLEGLRDKIAK-G 139

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
              G  ++   A  FG    D+ +S+  M+  L+FF RDG  + +++ +    L     +
Sbjct: 140 AMQGSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRDGQELVRKIRTAFP-LGEQQKR 198

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPI 260
           ++     +V+R+T  G  ++A+ +G + G  +W+  +PS +   VI A ++++P  GA I
Sbjct: 199 RLQLKFTRVVRATVKGNVVVAVTQGALGGFIFWMLDIPSALLWAVIMAFLSLLPAVGAGI 258

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +  V+IY L+ G I+    L L+G + + +VD  LRP LVG   K+P        +GG+
Sbjct: 259 VWAPVAIYFLLSGMIWQGVVLGLFGVLVIGLVDNVLRPILVGKDTKMPDYLILISTLGGM 318

Query: 321 RTMGLLGLFIGPVLMALIAVIW 342
              GL G  IGP++ AL    W
Sbjct: 319 SVFGLNGFVIGPLVAALFMSSW 340


>gi|104782535|ref|YP_609033.1| hypothetical protein PSEEN3498 [Pseudomonas entomophila L48]
 gi|95111522|emb|CAK16242.1| conserved hypothetical protein; putative membrane protein
           [Pseudomonas entomophila L48]
          Length = 354

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 76/352 (21%), Positives = 155/352 (44%), Gaps = 4/352 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M ET+L  + +   ++  + +  L+ L  +   +  A+I+G    P+    + +      
Sbjct: 1   MNETVLQNKALT-VLLALVTVAFLWILLPYAGAIFWAVILGILFSPLQRHLLLRFGGRRN 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
                A V+ + + ++P++ +    + E   L  ++               D+       
Sbjct: 60  LATATALVTCLLIAVLPVIVISALLVQEGAALYQRIESGQLDIAGYIERGKDMLPAYAQH 119

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L    + +   L+     +  T G  F+   A  FG    ++ +S   M+  LFFF R+
Sbjct: 120 FLDRMGMGNLDGLREKISKW-ATEGSQFLAGQAFSFGQGTFEFLVSFGIMLYLLFFFLRE 178

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +++++      L     +++     +V+R+T  G  ++AI +G + G  +W+  +PS
Sbjct: 179 GAEVARKVRQAVP-LPEQQKRRLQLKFKRVVRATVKGNLLVAITQGALGGLIFWVLDIPS 237

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +   V+ A ++++P  GA I +  V++Y L+ G  +    L  +G + + +VD  LRP 
Sbjct: 238 ALVWAVLMAFLSLLPAVGAGIVWGPVAVYFLLTGATWQGVVLIAFGVLVIGLVDNLLRPI 297

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           LVG   ++P        +GG+   GL G  IGP++ AL    W   + +  +
Sbjct: 298 LVGKDTRMPDYLVLVSTLGGLAVFGLNGFVIGPLIAALFVSSWAIFVSSKPQ 349


>gi|78062585|ref|YP_372493.1| hypothetical protein Bcep18194_B1735 [Burkholderia sp. 383]
 gi|77970470|gb|ABB11849.1| protein of unknown function UPF0118 [Burkholderia sp. 383]
          Length = 356

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 95/345 (27%), Positives = 167/345 (48%), Gaps = 7/345 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEESSTFLA 63
              Q     +   +++++L+ ++ F   +  A +I    WP+   F          T +A
Sbjct: 16  RTQQVSRAVLYAALLVIALWVIRDFIPAIAWACVIAIAMWPMLKRFESHRLFRNRPTLIA 75

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM-WASEL 122
           V+ T ++  L ++P+       + +  +L   +     +GIPVP  +  +P G    +E 
Sbjct: 76  VVITAAISLLVVLPVAVAATQAIGQAHDLREWLRTVQDNGIPVPDVIGRLPYGAAQITEW 135

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           W  +L HP    + + + +     +    F  +FG       L   FM++ LF   R G 
Sbjct: 136 WQANLGHP----LHAASAMHGVNSEKFLAFGRQFGTKLAHALLEFGFMLVTLFVILRAGH 191

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +S  L       F     ++   +   +  T  G+ ++ +GEG +LG AY LAGVP   
Sbjct: 192 KLSGALLQGARRAFGRSGAELIERMVAAVFGTVTGLVVVGLGEGALLGIAYALAGVPHAA 251

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            LG++TAI AM+P  AP+ F   +++L ++G    A  + + G + +F+ +  +RP L+G
Sbjct: 252 LLGLVTAIAAMLPFCAPVVFCGAALWLFVQGATMWAIVVAVLGFVVVFVAEHFVRPVLIG 311

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              +LPFL   FG++GG  T GL+GLF+GP LM ++ ++W E I 
Sbjct: 312 SSARLPFLLVLFGILGGAETFGLIGLFVGPALMTVLTMLWAEWIA 356


>gi|330981355|gb|EGH79458.1| hypothetical protein PSYAP_22717 [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 354

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 77/322 (23%), Positives = 142/322 (44%), Gaps = 3/322 (0%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             ++ L  F+  V  A+I+G    P+      K   S    ++   +  + + I+P++ +
Sbjct: 21  AFIWILLPFYGAVFWAVILGIIFAPVQRKLQIKFNWSRNLTSLCTLMICLVIAILPVIVI 80

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E   L   V               D+      + L    +   + L+       
Sbjct: 81  SALLVQEGTTLYKNVETGQLDIAGYLAEFKDLLPHSMQALLDRLGMGDLEGLRDKIAK-G 139

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
              G  ++   A  FG    D+ +S+  M+  L+FF RDG  + +++ +    L     +
Sbjct: 140 AMQGSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRDGQELVRKIRTAFP-LGEQQKR 198

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPI 260
           ++     +V+R+T  G  ++A+ +G + G  +W+  +PS +   VI A ++++P  GA I
Sbjct: 199 RLQLKFTRVVRATVKGNVVVAVTQGALGGFIFWVLDIPSALLWAVIMAFLSLLPAVGAGI 258

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +  V++Y L+ G I+    L L+G   + +VD  LRP LVG   K+P        +GG+
Sbjct: 259 VWAPVAVYFLLSGMIWQGVVLGLFGVFVIGLVDNVLRPILVGKDTKMPDYLILISTLGGM 318

Query: 321 RTMGLLGLFIGPVLMALIAVIW 342
              GL G  IGP++ AL    W
Sbjct: 319 SVFGLNGFVIGPLVAALFMSSW 340


>gi|221210158|ref|ZP_03583139.1| putative membrane protein [Burkholderia multivorans CGD1]
 gi|221170846|gb|EEE03312.1| putative membrane protein [Burkholderia multivorans CGD1]
          Length = 356

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 90/324 (27%), Positives = 160/324 (49%), Gaps = 7/324 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFIS--KKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+     +        T +A I T +V  L ++P+    
Sbjct: 35  WVIRAFIPAIAWACVIAIAMWPLLQRIEANALLRNRPTLVATIVTAAVSLLVVLPVAIAL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM-WASELWTKHLSHPQSLKILSETFL 141
              +++  +L         +GIP+P  ++ +P G    ++ W  +L HP    + + T +
Sbjct: 95  TQAIVQAHDLREWFQSIRDNGIPLPDVVNRLPYGAAQITQWWQTNLGHP----LHAATAM 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                + +  F  +FG           FM++ LF   R G  ++ +L    +  F     
Sbjct: 151 HGASGEKVLAFGRQFGTRVAHAVFEFGFMLVTLFVIVRAGHRLAGELLQGAQRAFGHDGA 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            +   +   ++ T  G+ ++ +GEG +LG AY LAGVP    LGV+TA+ AM+P  AP+ 
Sbjct: 211 HLIERMVAAVQGTVTGLVVVGLGEGALLGVAYALAGVPHAALLGVVTAVAAMLPFCAPLV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G    A  + + G + +F+ +  +RP L+G   +LPFL   FG++GG  
Sbjct: 271 FCGAALWLFVQGATAWAIVIAVLGFVVVFVAEHFVRPVLIGNSARLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKES 345
           T GL+GLF+GP LM ++ V+W E 
Sbjct: 331 TFGLIGLFVGPALMTVLTVLWAEW 354


>gi|329114629|ref|ZP_08243388.1| UPF0118 membrane protein [Acetobacter pomorum DM001]
 gi|326696109|gb|EGE47791.1| UPF0118 membrane protein [Acetobacter pomorum DM001]
          Length = 398

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 105/350 (30%), Positives = 170/350 (48%), Gaps = 8/350 (2%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE--SS 59
           + +    +     + +FI+ V++Y ++GF   +    +    +WP+Y+   +K     S 
Sbjct: 48  QRSRRGQEMARTVLALFIVGVAVYTIQGFLPALAWGSVFAIATWPLYTRACNKWPHAASG 107

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
           T L ++ T ++  LF++PL  +    + E +  +  +  A ++G+PVP  +  +P G  A
Sbjct: 108 TLLPLLFTAAMALLFVIPLTLVTLEAVGEAQSALEWLSHAREYGVPVPDTIHRLPFGSAA 167

Query: 120 -SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            S+ W  HLS P+ L  +                    G           F I+ LFF Y
Sbjct: 168 ISKWWEAHLSDPRDLSGMLGNLDSKG-----VAVTRAVGSQVAHRATLFCFSILTLFFLY 222

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +DG S+ +Q   +    F    + I R +   I  +  G+ ++ IGEGL+LG  Y  A  
Sbjct: 223 KDGLSVIRQCRVVSCRAFGKRGESIGRQIVASIHGSVQGLVLVGIGEGLLLGIIYVFAHA 282

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P     GVITA+ AMIP  A I+   VS+ +L++G+   A   F  GA+ +F  D  +RP
Sbjct: 283 PHPALFGVITAVAAMIPFCAMIAVGLVSLLILVQGSSVAAITTFCIGAVIIFTADHFIRP 342

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            L+GG  KLPFL    G++GG  T GL+GLF+GP  MA + ++W      
Sbjct: 343 ALIGGSTKLPFLWVLLGILGGAETWGLIGLFVGPAAMAALNLLWCRWAYG 392


>gi|149377701|ref|ZP_01895436.1| hypothetical protein MDG893_12430 [Marinobacter algicola DG893]
 gi|149357986|gb|EDM46473.1| hypothetical protein MDG893_12430 [Marinobacter algicola DG893]
          Length = 371

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 79/351 (22%), Positives = 146/351 (41%), Gaps = 5/351 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
                M++ + L  +  +K FF P+  A+ I     P+      +  +    +A++  + 
Sbjct: 8   RTFLAMLVGVSLAFILLMKPFFGPIFWAVAIALIFHPVREYLARRLGDRPNTIALLTLLI 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            M + ++P+L L    + E   L  ++       +    ++  +     A E +      
Sbjct: 68  CMVIVVIPVLGLVTSLVAEGLSLYQRIQEGQ---LRPGDYIDRVIQSFPAIESFFAQFGL 124

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             +            G  F+ + A  FG     + L +  MI   FF  RDG  +   L 
Sbjct: 125 DFAEVRDRVVSGFVGGSQFLAKQALGFGQNTFQFFLGLALMIYLAFFLLRDGSKLVDLLI 184

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                L     + +     +V R+T  G  +IA+ +G + G  +W+ G+   +  GV+ A
Sbjct: 185 RALP-LGDERERLLFAKFAEVTRATVKGNLLIAVIQGALGGGIFWILGIQGALLWGVVMA 243

Query: 250 IMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I++++P  GA + +   ++YL   G + +A  L  +G I + + D  LRP  VG   KLP
Sbjct: 244 IVSLLPAVGAALVWVPAALYLAATGEMVSAIVLTAFGVIVIGLADNLLRPVFVGRDTKLP 303

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                   +GG+   G+ G  +GP++ AL    W   I    E+++  S N
Sbjct: 304 DYIVLLSTLGGIVMFGINGFVMGPLVAALFMAFWGIFIREFGESEQAPSVN 354


>gi|326316808|ref|YP_004234480.1| hypothetical protein Acav_1999 [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323373644|gb|ADX45913.1| protein of unknown function UPF0118 [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 350

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 79/343 (23%), Positives = 146/343 (42%), Gaps = 5/343 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +T L        +++ + L  L  L  F   V   +I+     P++   +      +   
Sbjct: 2   KTTLLQNRTFIALLIAVSLAFLAILWPFHGAVFWGIILAILFAPMHRRLLRYMPRRANLA 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASE 121
           A+      + + I+P+  +    + E   +  ++            + +  +P   WA +
Sbjct: 62  ALCTLSLCLLVVILPMTLITVSLVQEASLVYERIRSGQLDFTAYFHQVMQAMP--SWAMQ 119

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +  +      S      + +      F+   A  FG   L + +S   M+  LFF  RDG
Sbjct: 120 ILDRLNLTTASELQARLSSVTVQATQFVGSKAIDFGQNTLQFVVSFGIMLYLLFFLLRDG 179

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            +++ ++      L   + ++++     VIR+T  G   +A  +G + G A+W  G+ + 
Sbjct: 180 PALAARIRE-ATPLDEGHKRQLATKFTTVIRATVKGNIAVAAAQGALGGLAFWFLGIQAP 238

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           V  GV+ A ++++P  GA + +  V+IYLL  G ++    L  +G   + +VD  LRP L
Sbjct: 239 VLWGVLMAFLSLLPAVGAGLIWAPVAIYLLATGAVWQGAGLAAFGIGVIGLVDNVLRPVL 298

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           VG   K+P        +GG+   GL G  IGPV+ AL    W 
Sbjct: 299 VGKDTKMPDYIVLISTLGGMSLFGLTGFVIGPVIAALFIATWD 341


>gi|221196526|ref|ZP_03569573.1| putative membrane protein [Burkholderia multivorans CGD2M]
 gi|221203195|ref|ZP_03576214.1| putative membrane protein [Burkholderia multivorans CGD2]
 gi|221177129|gb|EEE09557.1| putative membrane protein [Burkholderia multivorans CGD2]
 gi|221183080|gb|EEE15480.1| putative membrane protein [Burkholderia multivorans CGD2M]
          Length = 356

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 90/324 (27%), Positives = 160/324 (49%), Gaps = 7/324 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFIS--KKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+     +        T +A I T +V  L ++P+    
Sbjct: 35  WVIRAFIPAIAWACVIAIAMWPLLQRIEANALLRNRPTLVATIVTAAVSLLVVLPVAIAL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM-WASELWTKHLSHPQSLKILSETFL 141
              +++  +L         +GIP+P  ++ +P G    ++ W  +L HP    + + T +
Sbjct: 95  TQAIVQAHDLREWFQSIRDNGIPLPDVVNRLPYGAAQITQWWQTNLGHP----LHAATAM 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                + +  F  +FG           FM++ LF   R G  ++ +L    +  F     
Sbjct: 151 HGASGEKVLAFGRQFGTRVAHAVFEFGFMLVTLFVIVRAGHRLAGELLQGAQRAFGHDGA 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            +   +   ++ T  G+ ++ +GEG +LG AY LAGVP    LGV+TA+ AM+P  AP+ 
Sbjct: 211 HLIERMVAAVQGTVTGLVVVGLGEGALLGVAYALAGVPHAALLGVVTAVAAMLPFCAPLV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G    A  + + G + +F+ +  +RP L+G   +LPFL   FG++GG  
Sbjct: 271 FCGAALWLFVQGATAWAVVIAVLGFVVVFVAEHFVRPVLIGNSARLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKES 345
           T GL+GLF+GP LM ++ V+W E 
Sbjct: 331 TFGLIGLFVGPALMTVLTVLWAEW 354


>gi|167840497|ref|ZP_02467181.1| Predicted permease PerM family protein [Burkholderia thailandensis
           MSMB43]
          Length = 352

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 65/353 (18%), Positives = 138/353 (39%), Gaps = 3/353 (0%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           ++  + Q     +++ + +   + L  FF  +    I+     P+     ++  +     
Sbjct: 2   DSGNDHQKFFHLLLLVVTVGLCWILTPFFGAIFWGTILAILFQPVQRWLAARFGKRRNLA 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A++    ++ + I+PL F+    + E+     ++     +     +             L
Sbjct: 62  ALVTLSLIILIVILPLAFVTATLVQEIAYAYQQIKTLQPNMTQYFQEFMHALPSSVHRVL 121

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               L+    ++             F+   A   G     + +S   M+  +FF  RDG 
Sbjct: 122 HNYGLTDIAGIQKKLTD-GAAAISQFVAAQALSIGQNTFQFVVSFGVMLYLVFFLLRDGG 180

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I +++      L  A+ + +      V+R+T  G   +A  +G + G  +W+ G+   +
Sbjct: 181 EIGRRVRRALP-LNEAHKQHLLTKFTTVVRATVKGNIAVAAVQGALGGLIFWILGIEGVI 239

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             G + A ++++P  GA + +   + Y  + G ++    L  +    + +VD  LRP LV
Sbjct: 240 LWGALMAFLSLLPAIGAGLVWVPAAGYFAVTGQVWKCVILVAFCVGVIGLVDNLLRPILV 299

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G   K+P        +GG+   G+ G  IGP++ AL    W       + + E
Sbjct: 300 GKDTKMPDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDLFARTEQTDWE 352


>gi|237797235|ref|ZP_04585696.1| hypothetical protein POR16_00180 [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331020085|gb|EGI00142.1| hypothetical protein POR16_00180 [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 354

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 77/322 (23%), Positives = 141/322 (43%), Gaps = 3/322 (0%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             ++ L  F+  V  A+I+G    P+      K   S    ++      + + I+P++ +
Sbjct: 21  AFIWILLPFYGAVFWAVILGIIFAPVQRRLQIKFNWSRNLTSLCTLTICLVIAILPVIVI 80

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E   L   V               D+      + L    +   + L+       
Sbjct: 81  SALLVQEGTTLYKNVETGQLDIAGYLAEFKDLLPHSIQALLDRLGMGDLEGLRDKITK-G 139

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
              G  ++   A  FG    D+ +S+  M+  L+FF RDG  + +++ +    L     +
Sbjct: 140 AMQGSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRDGQELVRKIRTAFP-LGEQQKR 198

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPI 260
           ++     +V+R+T  G  ++A+ +G++ G  +W   +PS +   VI A ++++P  GA I
Sbjct: 199 RLQLKFTRVVRATVKGNVVVAVTQGMLGGFIFWALDIPSALLWAVIMAFLSLLPAVGAGI 258

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +  V++Y L+ G I+    L L+G   + +VD  LRP LVG   K+P        +GG+
Sbjct: 259 VWAPVAVYFLLSGMIWQGVILGLFGVFVIGLVDNVLRPVLVGKDTKMPDYLILISTLGGM 318

Query: 321 RTMGLLGLFIGPVLMALIAVIW 342
              GL G  IGP++ AL    W
Sbjct: 319 SVFGLNGFVIGPLIAALFISSW 340


>gi|237808109|ref|YP_002892549.1| hypothetical protein Tola_1348 [Tolumonas auensis DSM 9187]
 gi|237500370|gb|ACQ92963.1| protein of unknown function UPF0118 [Tolumonas auensis DSM 9187]
          Length = 365

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 97/336 (28%), Positives = 166/336 (49%), Gaps = 7/336 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            ++ F  PV  A+II + SWP+Y       +   T  A++ T+ V   FI+P L++    
Sbjct: 29  VVQPFIIPVAWAMIIAYASWPLYCLLRQSIKLRPTLSALLMTLLVTTAFILPTLWVISLL 88

Query: 86  MLEMKELVSKVVLANQHGIP-VPRWLSDIPG-GMWASELWTKHLSHPQSLKILSETFLKT 143
             E+    +        G P +P ++  +P  G W   L T+ +  P + +    T+L+ 
Sbjct: 89  RDEVGIAYTHFNSRIAEGPPKLPEYIRTLPWLGSWLDGLITQSIGDPAAFQDKISTWLQE 148

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
            G + +       G         + F +I LFF +RDG  I  Q+  +      A     
Sbjct: 149 -GSNQLVSVLGDVGRN----AAKVGFALITLFFMFRDGEHILTQVHKVLFRFLGARIDNY 203

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
              V ++  +   G+ + A+ +G V G  YW   + + + LG ITA+++MIP GAP ++ 
Sbjct: 204 LAAVGEMTIAVVWGLILTALAQGFVAGLGYWWLDLSAPMLLGAITALVSMIPFGAPFAWG 263

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
           +++++LLI G   N   L LWGA+ +  VD  +RP ++    ++PFL   FG++GG+   
Sbjct: 264 SITVFLLIDGQYLNGIILLLWGALAVSSVDNLVRPMVISSATQIPFLLVMFGVLGGLAAF 323

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           GL+GLF+GPV++A++  IW+E +          SS 
Sbjct: 324 GLVGLFMGPVILAVLMAIWQEWLEESDLESATDSSQ 359


>gi|299768601|ref|YP_003730627.1| hypothetical protein AOLE_01755 [Acinetobacter sp. DR1]
 gi|298698689|gb|ADI89254.1| hypothetical protein AOLE_01755 [Acinetobacter sp. DR1]
          Length = 372

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 98/357 (27%), Positives = 173/357 (48%), Gaps = 9/357 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIIL-VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE-S 58
           M     N Q ++ + + FI++ +    LK F  PVL A II + +WPIY        E  
Sbjct: 1   MHPYAPNLQRVLLFGLFFILIFLGFNILKYFIVPVLWAAIIAYMTWPIYLRIQRFFGETR 60

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIP-GG 116
           +T  A +    V+ +  VP     +    E + L   +      G + VP ++ D+P  G
Sbjct: 61  NTLNATLMISLVILVVGVPFTCAIFILQHEGRNLYFDLQRQVFSGHLSVPDFIRDLPFVG 120

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
              S    +  + P S       +++++       +            + + F + +LFF
Sbjct: 121 KEISRTLNELNNDPNSTIQNVAAWVQSH-----LSYGRVLLGEISKNIVKLGFAVFSLFF 175

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
           FYRDG  I  Q+    E +           + +  R+   G+ + AI + ++ G +Y++A
Sbjct: 176 FYRDGQMILSQVSKALEMVIGPRIHHYLDTISETTRAVVYGVGLTAIAQAVLAGLSYFVA 235

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           GVP+ + L + T ++A+IP G PIS+  V ++L  +G    A  + +WG + +   D  +
Sbjct: 236 GVPNPMVLTIATFLLALIPFGTPISYLGVGLWLFSQGQTMEAIGVVVWGVVIVSSSDNVI 295

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           RP ++ G  K+PFL   FG++GG+ + GL+GLFIGPV++A++  IW+E +    E +
Sbjct: 296 RPLVISGATKIPFLLIMFGVLGGIASFGLVGLFIGPVILAILLAIWREWLHETIEPE 352


>gi|330958144|gb|EGH58404.1| hypothetical protein PMA4326_06145 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 354

 Score =  223 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 77/322 (23%), Positives = 140/322 (43%), Gaps = 3/322 (0%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             ++ L  F+  V  A+I+G    P+      K   S    ++      + + I+P++ +
Sbjct: 21  AFIWILLPFYGAVFWAVILGIIFAPVQRRLQIKFNWSRNLTSLCTLTICLVIAILPVIVI 80

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E   L   V               D+      + L    +   + L+       
Sbjct: 81  SALLVQEGTMLYKNVETGQLDIAGYLAEFKDLLPHSIQALLDRLGMGDLEGLRDKITK-G 139

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
              G  ++   A  FG    D+ +S+  M+  L+FF RDG  + +++ +    L     +
Sbjct: 140 AMQGSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRDGQELVRKIRTAFP-LGEQQKR 198

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPI 260
           ++     +V+R+T  G  ++A+ +G + G  +W   +PS +   VI A ++++P  GA I
Sbjct: 199 RLQLKFTRVVRATVKGNVVVAVTQGALGGFIFWALDIPSALLWAVIMAFLSLLPAVGAGI 258

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +  V++Y L+ G I+    L L+G   + +VD  LRP LVG   K+P        +GG+
Sbjct: 259 VWAPVAVYFLLSGMIWQGVVLGLFGVFVIGLVDNVLRPILVGKDTKMPDYLILISTLGGM 318

Query: 321 RTMGLLGLFIGPVLMALIAVIW 342
              GL G  IGP++ AL    W
Sbjct: 319 SVFGLNGFVIGPLVAALFISSW 340


>gi|162419988|ref|YP_001607006.1| putative inner membrane protein [Yersinia pestis Angola]
 gi|162352803|gb|ABX86751.1| putative membrane protein [Yersinia pestis Angola]
          Length = 365

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 69/347 (19%), Positives = 143/347 (41%), Gaps = 10/347 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             IM +I+ S + ++ F      A ++   +WP+            +   V+ T+ ++ L
Sbjct: 19  IFIMGMIIASFWVIQPFVMGFAWAGMVVIATWPLLIRLEKLLWGRRSLAVVVMTILLILL 78

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP--GGMWASELWTKHLSHPQ 131
           F++P+  L    +     L+      +   +P   W+  IP  G    S   T       
Sbjct: 79  FVIPIALLVSSLVENSAPLIQWASSPSNLRMPNVDWMKSIPLIGDKLYSSWNTLISGGAN 138

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +L    + ++   G  +    A+  G   +   L ++F ++     Y  G  ++  +   
Sbjct: 139 ALMAKVQPYI---GATWFVAQAAHVGYFLIHLALMVLFSVL----LYIHGEQVALGIRHF 191

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                      +  +  K IR+  LG+ + A+ + ++ G    +AG+     L V+  I 
Sbjct: 192 AMRAADKRGDAVVVMAAKAIRAVALGVVVTALVQAILGGIGLAIAGIQYATLLTVLMFIC 251

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +   G  +      I++   G+    T L +W  I +  +D  LRP+L+     +P + 
Sbjct: 252 CVAQLGPLLVLVPAVIWVYWTGDTTWGTILLVWSCI-VGTLDNFLRPYLIRMEADMPMIL 310

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
              G++GG+ + G++GLFIGPV++A+   +    +    E +E ++ 
Sbjct: 311 ILSGVIGGLLSFGMIGLFIGPVVLAISYRLISAWVHETPEPEESVTD 357


>gi|253688831|ref|YP_003018021.1| hypothetical protein PC1_2454 [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251755409|gb|ACT13485.1| protein of unknown function UPF0118 [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 395

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 75/347 (21%), Positives = 138/347 (39%), Gaps = 6/347 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             I  +I+   + ++ F      A ++   +WP+   F +      +   ++ T+ ++ L
Sbjct: 46  AFITIMIIACFWVVQPFILGFAWACMVVIATWPMLIKFQALLWGRRSLAVIVMTLLLILL 105

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           FIVP+  L    +     L+S          P   WL+ IP  G      W   L    S
Sbjct: 106 FIVPIGVLVSSVVDNSSALMSWGARQENFSPPTLEWLTSIPLVGEKLFNSWQALLQSGGS 165

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                          ++   A+  G   +   L +IF  +     Y  G ++++ +    
Sbjct: 166 GLFAKVQPYFGKTATWLVAQAAHVGRFLMHCSLMLIFSAL----LYYKGEAVAKAVRHFA 221

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + AI + ++ G    L+G+P    L V+  +  
Sbjct: 222 IRLGQERGDAAVILAAQSIRAVALGVVVTAIVQSVLGGIGLGLSGIPYTTLLTVLMFLCC 281

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +   G         I+L   G+    T L +W    +  +D  +RP L+     LP L  
Sbjct: 282 LAQLGPLPVLIPAIIWLYWTGDNTWGTILLVWSC-VVGTIDNIIRPVLIRMGADLPMLLI 340

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             G++GG+   G++GLFIGPV++A+   +    +  I E +  +S N
Sbjct: 341 LSGVIGGLLAFGMIGLFIGPVVLAVSYRLLFAWMREIPEPQNILSVN 387


>gi|134293526|ref|YP_001117262.1| hypothetical protein Bcep1808_4840 [Burkholderia vietnamiensis G4]
 gi|134136683|gb|ABO57797.1| protein of unknown function UPF0118 [Burkholderia vietnamiensis G4]
          Length = 379

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 89/326 (27%), Positives = 155/326 (47%), Gaps = 7/326 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+   F       +  T +A + T  V  L ++P+    
Sbjct: 58  WVIRDFLPAIAWACVIAIALWPLLKRFESNRWFRDRPTLIATVVTAGVSLLVVLPVAIAL 117

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM-WASELWTKHLSHPQSLKILSETFL 141
              + +  +L   +     +GI +P  +S +P G    ++ W  +L HP    + + T +
Sbjct: 118 GQAIAQAHDLRIWLHSIQDNGIALPDVVSRLPYGSTQIADWWQANLGHP----LHAGTAM 173

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                + +  F  +FG           FM++ LF   R G  +S  L       F     
Sbjct: 174 HGANGEKVIAFGRQFGTKLAHALFEFGFMLVTLFVIMRAGHQLSGALLLGARRAFGRGGA 233

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            +   +   +  T  G+ ++ +GEG +LG AY LAG+P    LG +TA+ AM+P  API 
Sbjct: 234 ALIERMVAAVYGTVTGLVVVGLGEGAILGVAYALAGLPHAALLGFVTAVAAMLPFCAPIV 293

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G    A  +   G + +F+ +  +RP L+G   +LPFL   FG++GG  
Sbjct: 294 FCGAALWLFVQGATAWAIVVLALGIVVVFVAEHFVRPVLIGNSTRLPFLLVLFGILGGAE 353

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIM 347
           T GL+GLF+GP LM ++ ++W E + 
Sbjct: 354 TFGLIGLFVGPALMTVLTMLWSEWVA 379


>gi|290508508|ref|ZP_06547879.1| hypothetical protein HMPREF0485_00279 [Klebsiella sp. 1_1_55]
 gi|289777902|gb|EFD85899.1| hypothetical protein HMPREF0485_00279 [Klebsiella sp. 1_1_55]
          Length = 369

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 79/351 (22%), Positives = 149/351 (42%), Gaps = 7/351 (1%)

Query: 14  WMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
            +I+FI+ ++ +  L  +++ +L A I+     P+ +   ++  E +   A++  V +  
Sbjct: 12  ILIVFIVTLAFFDVLSPYYSAILWAAILAVIFNPVKNKIRTRLGERNGLAALLTIVIICL 71

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
           +   PL  +      E+  + SK+   + Q    V    + +PG  WA     +H     
Sbjct: 72  IVFTPLAIILSSLAYELNVVYSKLQHNDTQFPTVVASLFAHLPG--WARSFLAEHNLDSA 129

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                  + +      ++   A   G     + +S   M+  LFF  +DG  +   L   
Sbjct: 130 QQIQQQLSDVALKSGQYLAGSAFLIGKGTFGFTVSFGIMLYLLFFLLKDGPYLV-LLTLE 188

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L     + +      V R+T  G   +A+ +G + G A+W+AG+   +  G + A +
Sbjct: 189 SLPLSSYVKQHLFAKFAAVARATVKGTVAVALAQGALGGFAFWVAGLDGSILWGALMAFL 248

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           ++IP  G+ I +   +IYL   G ++    +  +  I + +VD  LRP LVG   K+P  
Sbjct: 249 SLIPAVGSAIIWVPAAIYLFATGQLWQGAFIVGFFVIVIGLVDNILRPLLVGKDTKMPDY 308

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK-ESIMAIKENKEKISSNF 360
                 +GG+   G+ G  IGP++ AL    W   S      N +++   F
Sbjct: 309 LILIATLGGMEIYGINGFVIGPLIAALFIACWNLLSGREHAGNTDELDEEF 359


>gi|296157947|ref|ZP_06840780.1| protein of unknown function UPF0118 [Burkholderia sp. Ch1-1]
 gi|295891715|gb|EFG71500.1| protein of unknown function UPF0118 [Burkholderia sp. Ch1-1]
          Length = 368

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 96/355 (27%), Positives = 167/355 (47%), Gaps = 5/355 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              + I   ++  I+++    L  F  PV  ALII + +WP+Y    +     +   A++
Sbjct: 9   DRKRVIQAVLLAAILVLGYVVLWPFVIPVAWALIIAYVTWPLYCRLHALIRGRAWISALL 68

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWT 124
            T+ V  +  +P+  L      E   L   V      G + +P +++ IP   W      
Sbjct: 69  MTLLVGMIAFIPIASLISPVFREFLALYRNVAEYAASGPLRIPDFIARIP---WLGHALQ 125

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           + +S           ++  +G  +I   AS  G       + + F  + LFF YRDG ++
Sbjct: 126 QLVSEFADDPQRLHAYITQSGDRWIGELASMVGS-VGRNAIKLGFATLTLFFAYRDGHTL 184

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +Q+  +   +           +  V RS   G+ + AI +G + G  YW AGV + + L
Sbjct: 185 LRQVQRVMRPVLGDRLDGYLSAIGGVTRSVVYGLALTAIVQGALAGLGYWAAGVEAPLLL 244

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            +IT + A+IP G P  +  V I L+  GN F    L LWGA+ +  VD  +RP ++   
Sbjct: 245 TIITTLAALIPFGTPFVWIPVGIGLIANGNTFAGVGLLLWGALVVSWVDNLIRPVVISNA 304

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +++PFL   FG++GG+   G +GLF+GPV++A++  +W+E   +  E     S++
Sbjct: 305 VRVPFLLVLFGVLGGIGAFGFIGLFVGPVVVAILLALWREWCTSEPETGSVDSAD 359


>gi|330944584|gb|EGH46538.1| hypothetical protein PSYPI_31203 [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 354

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 77/322 (23%), Positives = 142/322 (44%), Gaps = 3/322 (0%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             ++ L  F+  V  A+I+G    P+      K   S    ++   +  + + I+P++ +
Sbjct: 21  AFIWILLPFYGAVFWAVILGIIFAPVQRKLQIKFNWSRNLTSLCTLMICLVIAILPVIVI 80

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E   L   V               D+      + L    +   + L+       
Sbjct: 81  SALLVQEGTMLYKNVETGQLDIAGYLAEFKDLLPHSAQALLDRLGMGDLEGLRDKIAK-G 139

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
              G  ++   A  FG    D+ +S+  M+  L+FF RDG  + +++ +    L     +
Sbjct: 140 AMQGSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRDGQELVRKIRTAFP-LGEQQKR 198

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPI 260
           ++     +V+R+T  G  ++A+ +G + G  +W+  +PS +   VI A ++++P  GA I
Sbjct: 199 RLQLKFTRVVRATVKGNVVVAVTQGALGGFIFWVLDIPSALLWAVIMAFLSLLPAVGAGI 258

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +  V++Y L+ G I+    L L+G   + +VD  LRP LVG   K+P        +GG+
Sbjct: 259 VWAPVAVYFLLSGMIWQGVVLGLFGVFVIGLVDNVLRPILVGKDTKMPDYLILISTLGGM 318

Query: 321 RTMGLLGLFIGPVLMALIAVIW 342
              GL G  IGP++ AL    W
Sbjct: 319 SVFGLNGFVIGPLVAALFMSSW 340


>gi|302185038|ref|ZP_07261711.1| hypothetical protein Psyrps6_01802 [Pseudomonas syringae pv.
           syringae 642]
          Length = 354

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 77/322 (23%), Positives = 142/322 (44%), Gaps = 3/322 (0%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             ++ L  F+  V  A+I+G    P+      K   S    ++   +  + + I+P++ +
Sbjct: 21  AFIWILLPFYGAVFWAVILGIIFAPVQRKLQIKFNWSRNLTSLCTLMICLVIAILPVIVI 80

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E   L   V               D+      + L    +   + L+       
Sbjct: 81  SALLVQEGTMLYKNVETGQLDIAGYLAEFKDLLPHSVQALLDRLGMGDLEGLRDKIAK-G 139

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
              G  ++   A  FG    D+ +S+  M+  L+FF RDG  + +++ +    L     +
Sbjct: 140 AMQGSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRDGQELVRKIRTAFP-LGEQQKR 198

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPI 260
           ++     +V+R+T  G  ++A+ +G + G  +W+  +PS +   VI A ++++P  GA I
Sbjct: 199 RLQLKFTRVVRATVKGNVVVAVTQGALGGFIFWVLDIPSALLWAVIMAFLSLLPAVGAGI 258

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +  V++Y L+ G I+    L L+G   + +VD  LRP LVG   K+P        +GG+
Sbjct: 259 VWAPVAVYFLLSGMIWQGVVLGLFGVFVIGLVDNVLRPILVGKDTKMPDYLILISTLGGM 318

Query: 321 RTMGLLGLFIGPVLMALIAVIW 342
              GL G  IGP++ AL    W
Sbjct: 319 SVFGLNGFVIGPLVAALFMSSW 340


>gi|270261462|ref|ZP_06189735.1| putative transport protein [Serratia odorifera 4Rx13]
 gi|270044946|gb|EFA18037.1| putative transport protein [Serratia odorifera 4Rx13]
          Length = 370

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 75/351 (21%), Positives = 144/351 (41%), Gaps = 7/351 (1%)

Query: 14  WMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
            +I+FI+  +    L  +++ VL A+I+     P+ +       + +  ++++  + +  
Sbjct: 12  ILILFIVTAAFLDVLGPYYSSVLWAIILAVIFHPLKNKLKQYLGDRNGLVSLLTLLVICL 71

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHLSHPQ 131
           +   PL  +     LE   L  K+   N      +   +  +PG  WA     +H     
Sbjct: 72  IVFTPLAIIASSLALEFNVLYEKLQNNNTQLPAMLAEVMQHLPG--WARHFLAEHNLDSA 129

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +      + +   G  F+       G    ++ +    M+  LFF  +DG  +       
Sbjct: 130 AEIQKQLSDVALKGGQFLAGSVFLIGKGTFNFAVGFGIMLYLLFFLLKDGPYLVTLALEA 189

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L       +      V R+T  G  ++AI +G + G A+++ G+   +  G + A +
Sbjct: 190 LP-LSEHVKHHLFVKFAAVSRATVKGTVVVAIVQGALGGLAFYITGIDGSLLWGALMAFL 248

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           ++IP  G+ I +   +IY    G ++    L  +  + + +VD  LRP LVG   K+P  
Sbjct: 249 SIIPAVGSAIIWVPAAIYFFATGMLWQGAFLVGFFVVIIGLVDNILRPLLVGKDTKMPDY 308

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE-SIMAIKENKEKISSNF 360
                 +GG+   G+ G  IGP++ AL    W   S    +E  ++I   F
Sbjct: 309 LILISTLGGMEIYGINGFVIGPLIAALFIACWNILSGRDSEETTDEIDEAF 359


>gi|192288979|ref|YP_001989584.1| hypothetical protein Rpal_0549 [Rhodopseudomonas palustris TIE-1]
 gi|192282728|gb|ACE99108.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           TIE-1]
          Length = 384

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 73/353 (20%), Positives = 155/353 (43%), Gaps = 6/353 (1%)

Query: 8   PQGIMRWMIMFIILVSL---YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           P    ++ I+ +++ +    + L   ++ VL  ++I     P+               A+
Sbjct: 2   PASENKFFILLLVVATGLFGWILWPLYSAVLWGMVIAILFAPLNRGLNRAFGFRRNLAAL 61

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++   ++ + ++P+  L      E   + +K+   N   +   R L           L  
Sbjct: 62  MSVTIIVLMVLLPMSLLGAALAREAAGMYTKIESGNLDLLKTMRELLAARPDWLGDLLSR 121

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             + +   ++      L   G  ++   A   G    D+ +++  M+  LFF  RDG  +
Sbjct: 122 FGVGNLADIQQRLSAAL-LRGSQYLAGQALDIGQSTFDFTVNLFVMVYLLFFLLRDGDLL 180

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           + ++      L   +  ++      VIR+T  G  +IA+ +G + G A+++ G+   +  
Sbjct: 181 AARIRR-ATPLGVDHQTRLLDKFTVVIRATVKGNMLIALIQGALGGLAFYVLGISGALMW 239

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            V+ A ++++P  GA I +  +++YL+  G++++   L +WG + + +VD  LRP LVG 
Sbjct: 240 AVVMAFLSLLPAVGAGIVWLPMALYLIASGSVWHGVGLIVWGMLVIGMVDNFLRPILVGK 299

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
             ++P        +GG+   GL G  IGPV+ A+    W    +A ++  +  
Sbjct: 300 DTRMPDYVVLISTLGGLEVFGLNGFVIGPVIAAMFIATWDIYSIAREDAGDTP 352


>gi|325274729|ref|ZP_08140770.1| hypothetical protein G1E_15893 [Pseudomonas sp. TJI-51]
 gi|324100130|gb|EGB97935.1| hypothetical protein G1E_15893 [Pseudomonas sp. TJI-51]
          Length = 354

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 74/352 (21%), Positives = 156/352 (44%), Gaps = 4/352 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M ET L  + +   ++  + +  ++ L  ++  +  A+++     P+  + + +      
Sbjct: 1   MNETALQNKALA-VLLALVTIAFVWILLPYYGAIFWAVVLAILFAPLQRNLVMRFGRRRN 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A+  T+  + + ++P++      + E   L  ++               D+      +
Sbjct: 60  LAAITTTMICLLVAVLPVIITSLLLVQEGATLYQRIESGQLDIAGYVERGKDMLPAFAQN 119

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L    + +   L+     +  T G   +   A  FG    ++ +    M+  LFFF R+
Sbjct: 120 GLDHLGVGNLDGLRDKITKW-ATQGSQVLASQAFSFGQGTFEFLIGFGIMMYLLFFFLRE 178

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +++++  L   L     +++     +V+R+T  G  ++A+ +G + G  +W+  +PS
Sbjct: 179 GADVARRV-RLAVPLPEHQKRRLQLKFNRVVRATVKGNVLVAVTQGALGGFIFWVLDIPS 237

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  GV+ A+++++P  GA I +  V++Y L+ G I     L  +G + + +VD  LRP 
Sbjct: 238 ALVWGVLMALLSLLPAVGAGIVWAPVAVYFLLTGAILPGIILTAFGVLVIGLVDNLLRPI 297

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           LVG   ++P        +GG+   GL G  IGP++ AL    W     A  +
Sbjct: 298 LVGKDTRMPDYLILVSTLGGLTVFGLNGFVIGPLIAALFMSSWAIFAEAKPQ 349


>gi|189352951|ref|YP_001948578.1| putative permease [Burkholderia multivorans ATCC 17616]
 gi|189336973|dbj|BAG46042.1| putative permease [Burkholderia multivorans ATCC 17616]
          Length = 356

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 90/324 (27%), Positives = 160/324 (49%), Gaps = 7/324 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFIS--KKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+     +        T +A I T +V  L ++P+    
Sbjct: 35  WVIRAFIPAIAWACVIAIAMWPLLQRIEANALLRNRPTLVATIVTAAVSLLVVLPVAMAL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM-WASELWTKHLSHPQSLKILSETFL 141
              +++  +L         +GIP+P  ++ +P G    ++ W  +L HP    + + T +
Sbjct: 95  TQAIVQAHDLREWFQSIRDNGIPLPDVVNRLPYGAAQITQWWQTNLGHP----LHAATAM 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                + +  F  +FG           FM++ LF   R G  ++ +L    +  F     
Sbjct: 151 HGASGEKVLAFGRQFGTRVAHAVFEFGFMLVTLFVIVRAGHRLAGELLQGAQRAFGHDGA 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            +   +   ++ T  G+ ++ +GEG +LG AY LAGVP    LGV+TA+ AM+P  AP+ 
Sbjct: 211 HLIERMVAAVQGTVTGLVVVGLGEGALLGVAYALAGVPHAALLGVVTAVAAMLPFCAPLV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G    A  + + G + +F+ +  +RP L+G   +LPFL   FG++GG  
Sbjct: 271 FCGAALWLFVQGATVWAIVIAVLGFVVVFVAEHFVRPVLIGNSARLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKES 345
           T GL+GLF+GP LM ++ V+W E 
Sbjct: 331 TFGLIGLFVGPALMTVLTVLWAEW 354


>gi|238753651|ref|ZP_04615013.1| hypothetical protein yruck0001_13830 [Yersinia ruckeri ATCC 29473]
 gi|238708203|gb|EEQ00559.1| hypothetical protein yruck0001_13830 [Yersinia ruckeri ATCC 29473]
          Length = 367

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 76/346 (21%), Positives = 143/346 (41%), Gaps = 6/346 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             I+ +I+   + ++ F      A ++   +WP+     +      +   +I T+ ++ L
Sbjct: 19  IFILTMIIACFWVVQPFIMGFAWAGMVVIATWPLLIKLQAVLWGRRSLAVIIMTLLLVLL 78

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           F++P+  L    +     L+          IP   WL  IP  G      W   L+    
Sbjct: 79  FVIPIALLVSSLVENSAPLIKSASSPANLQIPEAAWLKSIPMIGDKLYSSWHTLLAGGGK 138

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           + I            +    A+  G   L   L ++F ++  F     G S++Q +    
Sbjct: 139 VLIAKVQPYVGETATWFVAQAAHIGRFLLHLALMVLFSVLLYF----RGESVAQGIRHFA 194

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ +G++ G    +AG+P  + L V+  +  
Sbjct: 195 IRLADQRGDAAVVLAAQSIRAVALGVVVTALVQGILGGIGLAIAGIPYAMLLTVVMFVCC 254

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +   G  +      I+L   G+    T L +W  I +  +D  LRP L+     LP +  
Sbjct: 255 VAQLGPLLVLIPAVIWLYWSGDNTFGTLLLVWSCI-VGTLDGVLRPALIRMGADLPMVLI 313

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G++GG+ + G++GLFIGPV++A+   +    I    E +E I+ 
Sbjct: 314 LSGVIGGLLSFGMIGLFIGPVVLAVSYRLIAAWIHEAPEPEENIAE 359


>gi|145598044|ref|YP_001162120.1| putative inner membrane protein [Yersinia pestis Pestoides F]
 gi|108775672|gb|ABG18191.1| membrane protein [Yersinia pestis Nepal516]
 gi|108779660|gb|ABG13718.1| putative membrane protein [Yersinia pestis Antiqua]
 gi|145209740|gb|ABP39147.1| membrane protein [Yersinia pestis Pestoides F]
          Length = 346

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 66/343 (19%), Positives = 139/343 (40%), Gaps = 6/343 (1%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           M +I+ S + ++ F      A ++   +WP+            +   V+ T+ ++ LF++
Sbjct: 1   MGMIIASFWVIQPFVMGFAWAGMVVIATWPLLIRLEKLLWGRRSLAVVVMTILLILLFVI 60

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKI 135
           P+  L    +     L+      +   +P   W+  IP  G      W   +S   +  +
Sbjct: 61  PIALLVSSLVENSAPLIQWASSPSNLRMPNVDWMKSIPLIGDKLYSSWNTLISGGANALM 120

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                       +    A+  G   +   L ++F ++     Y  G  ++  +       
Sbjct: 121 AKVQPYIGATATWFVAQAAHVGYFLIHLALMVLFSVL----LYIHGEQVALGIRHFAMRA 176

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                  +  +  K IR+  LG+ + A+ + ++ G    +AG+     L V+  I  +  
Sbjct: 177 ADKRGDAVVVMAAKAIRAVALGVVVTALVQAILGGIGLAIAGIQYATLLTVLMFICCVAQ 236

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G  +      I++   G+    T L +W  I +  +D  LRP+L+     +P +    G
Sbjct: 237 LGPLLVLVPAVIWVYWTGDTTWGTILLVWSCI-VGTLDNFLRPYLIRMEADMPMILILSG 295

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           ++GG+ + G++GLFIGPV++A+   +    +    E +E ++ 
Sbjct: 296 VIGGLLSFGMIGLFIGPVVLAISYRLISAWVHETPEPEESVTD 338


>gi|70731365|ref|YP_261106.1| hypothetical protein PFL_4009 [Pseudomonas fluorescens Pf-5]
 gi|68345664|gb|AAY93270.1| membrane protein, putative [Pseudomonas fluorescens Pf-5]
          Length = 353

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 78/327 (23%), Positives = 146/327 (44%), Gaps = 7/327 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            ++ L  F+  +  A+I+G    P+     ++        ++   +  + + I+P++   
Sbjct: 22  FIWILLPFYGALFWAVILGIVFAPLQRRLQARFGWQRNLTSLCTLLICLVIAILPVIITS 81

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + E  EL  K+       + +  +L+     +               LK L E  +K
Sbjct: 82  VLLVQEGAELYKKIESGQ---LDIAAYLAQFKHSLPPYFQHLLDRFGLGELKGLQEKVVK 138

Query: 143 T--NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           +   G  ++   A  FG    ++ +S   M+  LFFF RDG  + +++ +    L     
Sbjct: 139 SAMQGSQYLATQAFSFGQGTFEFVVSFFIMLYLLFFFLRDGPELVRKIRTAVP-LAEYQK 197

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAP 259
           +++     +V+R+T  G  ++A+ +G + G  +W   +PS +   V+ A ++++P  GA 
Sbjct: 198 RRLQLKFNRVVRATVKGNVLVAVTQGALGGLIFWFLDIPSALLWAVLMAFLSLLPAVGAG 257

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           I +  V+ Y LI G I+    L L+G   + +VD  LRP LVG   K+P        +GG
Sbjct: 258 IVWGPVAAYFLISGAIWQGVVLGLFGVFVIGLVDNLLRPILVGKDTKMPDYLILISTLGG 317

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESI 346
           +   GL G  IGP++ AL    W   +
Sbjct: 318 LAIFGLNGFVIGPLIAALFMSSWALFV 344


>gi|121610898|ref|YP_998705.1| hypothetical protein Veis_3980 [Verminephrobacter eiseniae EF01-2]
 gi|121555538|gb|ABM59687.1| protein of unknown function UPF0118 [Verminephrobacter eiseniae
           EF01-2]
          Length = 352

 Score =  222 bits (566), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 79/332 (23%), Positives = 142/332 (42%), Gaps = 5/332 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +++ + +     L  F   V   +I+     P +   + +     T  A+      + +
Sbjct: 13  LLLILVTIAFGAILWQFHGAVFWGVILAILFAPWHRRLLDRMPGRPTLAALCTLALCLIV 72

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
            I+PL  +      E   +  +V       G+ + + ++ +P   WA  L          
Sbjct: 73  VILPLAAITVSLAQEATVIYERVYTGQIDFGLYLQQVIAALPA--WAVNLLDGLHLTSVG 130

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                 + +      F+   A   G   L++ +S   M+  LFF  RDG  ++ ++    
Sbjct: 131 QWQQRLSAVAVQASQFLATQALNIGQNTLEFIVSFGVMLYLLFFLLRDGPRLALRIGQ-A 189

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L P + + + R    VIR+T  G  ++A  +G + G  +W+ G+   V  GV+ A ++
Sbjct: 190 TPLEPNHKQPLIRNFTTVIRATVKGNIVVAAAQGALGGLIFWVLGIQGPVLWGVLMAFLS 249

Query: 253 MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++P  GA + +  V+IY L  G I+    L  +G   + +VD  LRP LVG   K+P   
Sbjct: 250 LLPAVGAGLIWVPVAIYFLATGAIWQGVVLTAFGVGVIGLVDNILRPILVGKDTKMPDYI 309

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                +GG+   GL+G  IGPV+ AL    W+
Sbjct: 310 VLISTLGGMALFGLMGFVIGPVIAALFIASWE 341


>gi|293604365|ref|ZP_06686772.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292817242|gb|EFF76316.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 365

 Score =  222 bits (566), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 77/345 (22%), Positives = 142/345 (41%), Gaps = 5/345 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M E+          +++ + +   + L  F+  V    I+     P+    + +      
Sbjct: 1   MSESSSLHHRTFLLLLVVVSIAFGWLLWPFYGAVFWGAILAIIFGPLQRRLVKRMGGRRN 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWA 119
             A+I  + V+ L I+PL+ +    + E   L   +       G    + ++ +P  +  
Sbjct: 61  LSALITLLGVLLLVILPLVAISGSLVREGANLYQSIKSGELNFGAYFQQAMAALPPSVHD 120

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                     P   + LS   ++     F+   A   G     + +S   M+  LFF  R
Sbjct: 121 VLARFDLADIPSLQEKLSAGAMQ--ASQFLATQALSIGQDTFQFVISFGIMLYLLFFLLR 178

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  +S ++      L  A+ + + R    V+R+T  G   +A  +G + G  + +  + 
Sbjct: 179 DGPELSARIKR-AMPLSEAHKQHLFRKFTTVVRATVKGNIAVAAAQGALGGIIFSVLSIQ 237

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             +  GVI   ++++P  GA + +  V+IY L+ G +     L  +G + + +VD  LRP
Sbjct: 238 GALLWGVIMGFLSLLPAVGAGLIWAPVAIYFLLTGAVVKGAVLIAFGVLVIGMVDNVLRP 297

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            LVG   K+P        +GG+   GL G  IGP++ AL    W 
Sbjct: 298 ILVGKDTKMPDYVVLISTLGGMALFGLNGFVIGPLIAALFMASWD 342


>gi|33597100|ref|NP_884743.1| hypothetical protein BPP2512 [Bordetella parapertussis 12822]
 gi|33566551|emb|CAE37807.1| putative exported protein [Bordetella parapertussis]
          Length = 358

 Score =  222 bits (566), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 80/345 (23%), Positives = 147/345 (42%), Gaps = 5/345 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M ++ L        +++ + +   + L  F+  V    I+     P++     +      
Sbjct: 1   MSQSSLFNSRAFVGLLIVVTIAFAWLLWPFYGAVFWGAILAIIFAPVHRRIAVRLAPRRN 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWA 119
             A++  + V+ + I+PL+F+    + E   L  ++   N   G  + + +  +P     
Sbjct: 61  LAALLTLLMVLLVVIIPLIFITGSLVQEGANLYQRLKSGNLNFGAYLQQAIDALP--PTV 118

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            ++  +             T        FI   A   G     + +    M+  LFF  R
Sbjct: 119 HDVLARFDLADLGSIQEKLTAGMMQASQFIATQAFNIGQDTFQFLIGFGVMLYLLFFLLR 178

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  +S++L      L   + + + R    VIR+T  G  ++A  +G + G  + + G+ 
Sbjct: 179 DGSQLSRRLRRAVP-LDEHHKQHLFRKFTTVIRATVKGNIVVAAAQGALGGVMFSVLGIQ 237

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             +  GVI A ++++P  GA + +  V++Y L+ G I+    L L+G + + +VD  LRP
Sbjct: 238 GALLWGVIMAFLSLLPAIGAGLIWAPVAVYFLLTGAIWQGVVLILFGVLVIGMVDNVLRP 297

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            LVG   KLP        +GG+   GL G  IGP++ AL    W 
Sbjct: 298 LLVGKDTKLPDYVVLISTLGGMALFGLNGFVIGPLIAALFVACWD 342


>gi|33593825|ref|NP_881469.1| hypothetical protein BP2885 [Bordetella pertussis Tohama I]
 gi|33600943|ref|NP_888503.1| hypothetical protein BB1958 [Bordetella bronchiseptica RB50]
 gi|33563898|emb|CAE43157.1| putative exported protein [Bordetella pertussis Tohama I]
 gi|33575378|emb|CAE32455.1| putative exported protein [Bordetella bronchiseptica RB50]
          Length = 358

 Score =  222 bits (565), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 80/345 (23%), Positives = 146/345 (42%), Gaps = 5/345 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M ++ L        +++ + +   + L  F+  V    I+     P++     +      
Sbjct: 1   MSQSSLFNSRAFVGLLIVVTIAFAWLLWPFYGAVFWGAILAIIFAPVHRRIAVRLAPRRN 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWA 119
             A++  + V+ + I+PL+F+    + E   L  ++   N   G  + + +  +P     
Sbjct: 61  LAALLTLLMVLLVVIIPLIFITGSLVQEGANLYQRLKSGNLNFGAYLQQAIDALP--PTV 118

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            ++  +             T        FI   A   G     + +    M+  LFF  R
Sbjct: 119 HDVLARFDLADLGSIQEKLTAGMMQASQFIATQAFNIGQDTFQFLIGFGVMLYLLFFLLR 178

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  +S++L      L   + + + R    VIR+T  G   +A  +G + G  + + G+ 
Sbjct: 179 DGSQLSRRLRRAVP-LDEHHKQHLFRKFTTVIRATVKGNIAVAAAQGALGGVMFSVLGIQ 237

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             +  GVI A ++++P  GA + +  V++Y L+ G I+    L L+G + + +VD  LRP
Sbjct: 238 GALLWGVIMAFLSLLPAIGAGLIWAPVAVYFLLTGAIWQGVVLILFGVLVIGMVDNVLRP 297

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            LVG   KLP        +GG+   GL G  IGP++ AL    W 
Sbjct: 298 LLVGKDTKLPDYVVLISTLGGMALFGLNGFVIGPLIAALFVACWD 342


>gi|157370292|ref|YP_001478281.1| hypothetical protein Spro_2050 [Serratia proteamaculans 568]
 gi|157322056|gb|ABV41153.1| protein of unknown function UPF0118 [Serratia proteamaculans 568]
          Length = 373

 Score =  222 bits (565), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 75/351 (21%), Positives = 146/351 (41%), Gaps = 7/351 (1%)

Query: 14  WMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
            +I+FI+  +    L  +++ VL A+I+     P+         E +  ++++    +  
Sbjct: 12  ILILFIVTAAFLDVLGPYYSSVLWAIILAVIFHPVKQKLKQYLGERNGLVSLLTVAVICL 71

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
           +   PL  +     +E+  + +K+   N Q  + +   L  +PG  WA    T+H     
Sbjct: 72  IVFTPLAIIASSLAIELNVVYTKLQGNNAQFPVVLADTLRVLPG--WARHFLTEHNLDNA 129

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +      + +   G  ++       G    ++ +    M+  LFF  +DG  +   L   
Sbjct: 130 AEIQKKLSQVALQGGQYLAGSVFLIGKGTFNFAVGFGVMLYLLFFLLKDGPYLVN-LTLQ 188

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L       +      V R+T  G  ++A  +G + G A+++ G+   +    + A +
Sbjct: 189 ALPLSEHVKHHLFVKFAAVSRATVKGTVVVAAVQGALGGLAFYITGIEGSLLWAALMAFL 248

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           ++IP  G+ I +   +IY    G ++    L  +  + + +VD  LRP LVG   K+P  
Sbjct: 249 SIIPAVGSAIIWVPAAIYFFATGMLWKGLFLVGFFVVIIGLVDNILRPLLVGKDTKMPDY 308

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE-SIMAIKENKEKISSNF 360
                 +GG+   G+ G  IGP++ AL    W   S     E  ++I  +F
Sbjct: 309 LILISTLGGMEIYGINGFVIGPLIAALFIACWNILSGRDSAETTDEIDEDF 359


>gi|239816920|ref|YP_002945830.1| hypothetical protein Vapar_3950 [Variovorax paradoxus S110]
 gi|239803497|gb|ACS20564.1| protein of unknown function UPF0118 [Variovorax paradoxus S110]
          Length = 360

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 78/345 (22%), Positives = 142/345 (41%), Gaps = 5/345 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +G+   ++  + +  L+ L  FF  VL  + +     P+Y   +          A+   
Sbjct: 7   QRGVFLALLAAVTVAFLWVLMPFFGAVLWGVALAILFTPLYKRLLKAMPGKPNAAALSTL 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKH 126
              + + I+PL  +    + E+ ++   +            + L+ +P   W   L+ + 
Sbjct: 67  AICLFIVILPLAMVGVSLVQEIVQVTQSIRSGQINFAAYFQQILNAVP--QWLLNLFDRF 124

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                       +     G   I   A   G    D+ +S   M+  L+F  RDG ++S+
Sbjct: 125 NLGDMEAWQARISAGAAQGSQLIAGQALTIGQNTFDFVISFFVMLYLLYFLVRDGSALSK 184

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +      L   +   +      VIR+T  G   +AI +G + G A+WL GV   +   V
Sbjct: 185 SMREAVP-LARPHTHYLLNKFTTVIRATVKGNVAVAIAQGAIGGLAFWLLGVQGALLWAV 243

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           + A ++++P  GA + +  V+IY L  G+ +    L   G   + +VD  LRP LVG   
Sbjct: 244 LMAFLSLLPAVGAALIWGPVAIYFLATGHFWQGGILVFVGVFVIGLVDNILRPVLVGKDT 303

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++P        +GG+   G+ G  IGPV+ AL    W   + + +
Sbjct: 304 QMPDYIVLMSTIGGMAIFGINGFVIGPVIAALFMAAWSLFVESGQ 348


>gi|53803180|ref|YP_115110.1| hypothetical protein MCA2709 [Methylococcus capsulatus str. Bath]
 gi|53756941|gb|AAU91232.1| conserved hypothetical integral membrane protein [Methylococcus
           capsulatus str. Bath]
          Length = 362

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 76/333 (22%), Positives = 161/333 (48%), Gaps = 10/333 (3%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
           ++   ++ F   +  A+ + + +WP+++    + E   T  A++ T  +  + + PL++L
Sbjct: 20  LTYAVVRPFLVSIGWAVFVSYVAWPLHAWSQRRFEGRKTLSALVTTALLGSVVLAPLIWL 79

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
                 E+ EL+  +    +    +P ++S IP        +   L             L
Sbjct: 80  AVLLQGEVSELIRSLPDWLEQKPRLPDFVSHIP-------YFGNELQAVVDQFEDLHGLL 132

Query: 142 KTNGIDFIPRFAS---RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
           K +  +++ R  S         +     +   +  LFF +RDG  ++  +  +   +   
Sbjct: 133 KRHAPEWVRRLGSPVLGIMTTLVQNAAVLFMTLFTLFFLFRDGLQLATDVRRVFTRVLGE 192

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             K     +   +++   G+ + A+ +G + G  YW+ GV + + LG+ T ++AMIP G 
Sbjct: 193 RLKGYFATIEATVKAVLYGIVLTALAQGFLAGLGYWIVGVKAPIVLGIATTLIAMIPFGT 252

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P ++ +VSI+LL++G  +    L LWG + +  +D  +RP ++     +PF+   FG++G
Sbjct: 253 PFAWGSVSIWLLLQGETWAGVSLALWGTLVISWIDNIIRPLVISSATHIPFVLVMFGVLG 312

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           G+ + G +GL +GPV++A+   +W+E +  ++E
Sbjct: 313 GLASFGFIGLVLGPVILAMALAVWREWLQQVRE 345


>gi|238787117|ref|ZP_04630917.1| hypothetical protein yfred0001_6030 [Yersinia frederiksenii ATCC
           33641]
 gi|238724905|gb|EEQ16545.1| hypothetical protein yfred0001_6030 [Yersinia frederiksenii ATCC
           33641]
          Length = 367

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 72/359 (20%), Positives = 143/359 (39%), Gaps = 6/359 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R   L         IM +I+ S + ++ F      A ++   +WP+             
Sbjct: 6   LRRFDLPKLMFGVIFIMIMIVASFWVVQPFVMGFAWAGMVVIATWPLLVRLQKLLWGKRW 65

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWA 119
              ++ T+ ++ LF++P+  L    +     L+      +   +P   WL  IP  G   
Sbjct: 66  LAVMVMTLLLILLFVIPIALLVSSLVENSGPLIQWASSPSNLRMPDVTWLQTIPMVGNKL 125

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              W   ++   ++ I          + ++   A+  G   +   L ++F I+  F    
Sbjct: 126 YSGWHTLIAGGGNVLIAKIQPYIGASVTWLVAQAAHVGYFLIHLALMLLFSILLYF---- 181

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G  +   +              +  +  K IR+  LG+ + A+ + ++ G    LAGV 
Sbjct: 182 HGEQVGLAIRHFAVRAADKRGDAVVVLAAKAIRAVALGVVVTALVQSVLGGIGLALAGVQ 241

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
                 V+  +  +   G  +      I+L   G+    T L +W  I +  +D  LRP+
Sbjct: 242 YATLFTVLMFVCCVAQLGPLLILIPAVIWLYWTGDSTWGTILLVWSCI-VGTMDNVLRPY 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L+     +P +    G++GG+ + G++GLFIGPV++A+   +    +    E +E I+ 
Sbjct: 301 LIRMEADMPMILILSGVIGGLLSFGMIGLFIGPVVLAISYRLTAAWVSEAPEPEESITE 359


>gi|213970022|ref|ZP_03398154.1| membrane protein [Pseudomonas syringae pv. tomato T1]
 gi|301381377|ref|ZP_07229795.1| hypothetical protein PsyrptM_02033 [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062148|ref|ZP_07253689.1| hypothetical protein PsyrptK_19351 [Pseudomonas syringae pv. tomato
           K40]
 gi|302130458|ref|ZP_07256448.1| hypothetical protein PsyrptN_03622 [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213925126|gb|EEB58689.1| membrane protein [Pseudomonas syringae pv. tomato T1]
 gi|330875760|gb|EGH09909.1| hypothetical protein PSYMP_11317 [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330965579|gb|EGH65839.1| hypothetical protein PSYAC_13156 [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|331017284|gb|EGH97340.1| hypothetical protein PLA106_14651 [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 354

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 75/322 (23%), Positives = 139/322 (43%), Gaps = 3/322 (0%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             ++ L  F+  V  A+I+G    P+      K        ++      + + I+P++ +
Sbjct: 21  AFIWILLPFYGAVFWAVILGIIFAPVQRRLQIKFNWPRNLTSLCTLTICLVIAILPVIVI 80

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E   L   V               ++      + L    +   + L+       
Sbjct: 81  SALLVQEGTTLYKNVETGQLDIAGYLAEFKNLLPHSIQALLDRLGMGDLEGLRDKITK-G 139

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
              G  ++   A  FG    D+ +S+  M+  L+FF RDG  + +++ +    L     +
Sbjct: 140 AMQGSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRDGQELVRKIRTAFP-LGEQQKR 198

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPI 260
           ++     +V+R+T  G  ++A+ +G + G  +W   +PS +   VI A ++++P  GA I
Sbjct: 199 RLQLKFTRVVRATVKGNVVVAVTQGALGGFIFWALDIPSALLWAVIMAFLSLLPAVGAGI 258

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +  V++Y L+ G I+    L L+G   + +VD  LRP LVG   K+P        +GG+
Sbjct: 259 VWAPVALYFLLSGMIWQGVVLGLFGVFVIGLVDNVLRPILVGKDTKMPDYLILISTLGGM 318

Query: 321 RTMGLLGLFIGPVLMALIAVIW 342
              GL G  IGP++ AL    W
Sbjct: 319 SVFGLNGFVIGPLIAALFISSW 340


>gi|39933625|ref|NP_945901.1| hypothetical protein RPA0548 [Rhodopseudomonas palustris CGA009]
 gi|39647471|emb|CAE25992.1| Protein of unknown function UPF0118 [Rhodopseudomonas palustris
           CGA009]
          Length = 386

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 73/353 (20%), Positives = 155/353 (43%), Gaps = 6/353 (1%)

Query: 8   PQGIMRWMIMFIILVSL---YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           P    ++ I+ +++ +    + L   ++ VL  ++I     P+               A+
Sbjct: 2   PASENKFFILLLVVATGLFGWILWPLYSAVLWGMVIAILFAPLNRGLNRAFGFRRNLAAL 61

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++   ++ + ++P+  L      E   + +K+   N   +   R L           L  
Sbjct: 62  MSVTIIVLMVLLPMSLLGAALAREAAGMYTKIESGNLDLLKTMRELLAARPDWLGDLLSR 121

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             + +   ++      L   G  ++   A   G    D+ +++  M+  LFF  RDG  +
Sbjct: 122 FGVGNLADIQQRLSAAL-LRGSQYLAGQALDIGQSTFDFTVNLFVMVYLLFFLLRDGDLL 180

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           + ++      L   +  ++      VIR+T  G  +IA+ +G + G A+++ G+   +  
Sbjct: 181 AARIRR-ATPLGVDHQTRLLDKFTVVIRATVKGNMLIALIQGALGGLAFYVLGISGALMW 239

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            V+ A ++++P  GA I +  +++YL+  G++++   L +WG + + +VD  LRP LVG 
Sbjct: 240 AVVMAFLSLLPAVGAGIVWLPMALYLIASGSVWHGVGLIVWGMLVIGMVDNFLRPILVGK 299

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
             ++P        +GG+   GL G  IGPV+ A+    W    +A ++  +  
Sbjct: 300 DTRMPDYVVLISTLGGLEVFGLNGFVIGPVIAAMFIATWDIYSIAREDAGDTP 352


>gi|264678266|ref|YP_003278173.1| hypothetical membrane protein [Comamonas testosteroni CNB-2]
 gi|262208779|gb|ACY32877.1| hypothetical membrane protein [Comamonas testosteroni CNB-2]
          Length = 368

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 73/333 (21%), Positives = 139/333 (41%), Gaps = 6/333 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L+ +   +   ++      P++   + +     T  A+   +  + + I+PL  +    
Sbjct: 2   VLEEYAVAIFWGVVFAIVFAPLHRKLLMRMPNKPTLAALATLLISLVMVILPLSLIGLSL 61

Query: 86  MLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
           + E   +  ++   N   G  V +  + +P   W +    K             + +   
Sbjct: 62  IKETAAIYDRISSGNLSAGSYVEQVFNALP--SWLTPWMEKLHLGTLEEIQTKLSNIALQ 119

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
                   A   G   L + +    M+  +FF  RDG  +  ++ +    L P + ++++
Sbjct: 120 ASKLAATKAVGLGQNTLGFVVGFGVMLYLIFFLLRDGKELVARIWA-ATPLAPEHKRELA 178

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
                VIR+T  G   +A  +G + G  +WL G+   V   V+ A ++++P  GA + + 
Sbjct: 179 IKFITVIRATVKGNLAVAAAQGALGGLIFWLLGIQGAVLWAVVMAFLSLLPAVGAGLVWG 238

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
            V+IY L  G +     L  +G + + +VD  LRP LVG   K+P        +GG+   
Sbjct: 239 PVAIYFLATGAVTKGLILAAYGVLVIGLVDNVLRPLLVGKDTKMPDYVVLISTLGGMALF 298

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           GL G  +GP + AL    W E    ++E +EK+
Sbjct: 299 GLSGFVLGPAIAALFMAAW-ELFATMQEQEEKL 330


>gi|261822011|ref|YP_003260117.1| inner membrane protein [Pectobacterium wasabiae WPP163]
 gi|261606024|gb|ACX88510.1| protein of unknown function UPF0118 [Pectobacterium wasabiae
           WPP163]
          Length = 369

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 75/347 (21%), Positives = 138/347 (39%), Gaps = 6/347 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             I  +I+   + ++ F      A ++   +WP+   F +      +   ++ T  ++ L
Sbjct: 20  VFITIMIIACFWVVQPFILGFAWACMVVIATWPLLIKFQALLWGRRSLAVLVMTFLLILL 79

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           FIVP+  L    +     L+S          P   WL+ IP  G      W   L    S
Sbjct: 80  FIVPIAVLISSVVDNSSALMSWGARQENFSPPTLEWLTSIPLVGEKLFNSWQALLQSGGS 139

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                          ++   A+  G   +   L +IF  +     Y  G ++++ +    
Sbjct: 140 GLFAKVQPYFGKTATWLVAQAAHIGRFLMHCTLMLIFSAL----LYYKGEAVAKAVRHFA 195

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + AI + ++ G    L+G+P    L V+  +  
Sbjct: 196 IRLGQERGDAAVILAAQSIRAVALGVVVTAIVQSVLGGIGLGLSGIPYTTLLTVLMFLCC 255

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +   G  +      I+L   G+    T L +W    +  +D  +RP L+     LP L  
Sbjct: 256 LAQLGPLLVLIPAIIWLYWTGDNTWGTILLVWSC-VVGTIDNVIRPMLIRMGADLPMLLI 314

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             G++GG+   G++GLFIGPV++A+   +    +  I E +  +S N
Sbjct: 315 LSGVIGGLLAFGMIGLFIGPVVLAVSYRLLFAWMREIPEPQSILSVN 361


>gi|292488505|ref|YP_003531389.1| putative AI-2E family transporter [Erwinia amylovora CFBP1430]
 gi|292899691|ref|YP_003539060.1| membrane protein [Erwinia amylovora ATCC 49946]
 gi|291199539|emb|CBJ46656.1| putative membrane protein [Erwinia amylovora ATCC 49946]
 gi|291553936|emb|CBA20981.1| putative AI-2E family transporter [Erwinia amylovora CFBP1430]
 gi|312172649|emb|CBX80905.1| putative AI-2E family transporter [Erwinia amylovora ATCC BAA-2158]
          Length = 372

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 78/359 (21%), Positives = 149/359 (41%), Gaps = 10/359 (2%)

Query: 9   QGIMRWMIMFIILVS----LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           QG+ +   +FI+ V+    L+ L  +F+ +L A I+     P+ S       + +   ++
Sbjct: 4   QGMSKGFFIFILAVTTLGFLHILGPYFSAILWAAILAIIFHPLKSKIRKYCGDRNGLASM 63

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP-RWLSDIPGGMWASELW 123
           +  + +  +  +PL  +     +E   L +++         V    ++ +P   W     
Sbjct: 64  LTLLIICLIVFIPLAVVVSSLAVEFNALYNRIQANQTELTTVATSVVNHLP--EWLRHFL 121

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            ++  +  +      + +   G  F        G     + +    M+  LFF  +DG  
Sbjct: 122 AENNLNDANAIQQKLSGVAMKGGQFFAGSLMMIGKSTFSFTIGFGVMLYLLFFLLKDGAY 181

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +          L       +      V R+T  G  ++A+ +G + G A+W AG+   + 
Sbjct: 182 LVGMALDAIP-LSRFVKHHLFVKFAAVSRATVKGTVVVAVVQGTLGGIAFWCAGIQGSML 240

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G + A +++IP  G+ I +  V I+LL  G +     L  +  + + +VD  LRP LVG
Sbjct: 241 WGSLMAFLSLIPAVGSAIIWLPVVIWLLFSGAMVKGLALTFFFVVVIGLVDNILRPLLVG 300

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK-ESIMAIKENKEKISSNF 360
              K+P        +GG+   G+ G  IGP++ AL    W   S    + N ++I S+F
Sbjct: 301 KDTKMPDYLILISTLGGMEIYGINGFVIGPLIAALFISCWNLLSGRDHRGNTDEIDSDF 359


>gi|290475511|ref|YP_003468399.1| putative transport protein [Xenorhabdus bovienii SS-2004]
 gi|289174832|emb|CBJ81633.1| putative transport protein [Xenorhabdus bovienii SS-2004]
          Length = 369

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 67/337 (19%), Positives = 132/337 (39%), Gaps = 6/337 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
             + L  F    + + ++   +WP+                 I T+ ++ LF++P+  L 
Sbjct: 27  CFWVLSPFVLGFIWSGMVVIATWPLLEKLQQHLWGKRWIAVSIMTLLLVLLFVIPIALLV 86

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQSLKILSETFL 141
              +     L+      +   +P   WLS IP  G      W   ++   ++ +      
Sbjct: 87  SSLLENSTPLIEWAKSPSTFQLPQLEWLSRIPVIGEDLYVKWQDTVADGSNILLTKIPPY 146

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                 +    A+  G       L ++F ++     Y  G  +   +      L      
Sbjct: 147 IGKTATWFFTQAANAGRFLFHLVLMVLFSVL----LYWKGEQVMLSIRHFAIRLADQRGD 202

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            +  +  + IR+  LG+ + A+ + +  G    +AG+P  + L V+  I  +   G  + 
Sbjct: 203 AVVLLAAQSIRAVALGVVVTALVQAIAGGIGLAIAGIPYAMILTVLMFICCVAQLGPLLV 262

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
                 +L   G     T L +W  + L  +D  LRPFL+     LP +    G++GG+ 
Sbjct: 263 LVPSIAWLYWTGETTWGTVLVIWS-LVLTTMDGVLRPFLIRLGADLPMVLILTGVIGGIL 321

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           ++GL+GLFIGPV++A+   +    +  + + + K   
Sbjct: 322 SLGLIGLFIGPVVLAVSYRLLLAWMNEVPKPENKTED 358


>gi|319779612|ref|YP_004130525.1| hypothetical protein TEQUI_1468 [Taylorella equigenitalis MCE9]
 gi|317109636|gb|ADU92382.1| membrane protein, putative [Taylorella equigenitalis MCE9]
          Length = 387

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 81/336 (24%), Positives = 148/336 (44%), Gaps = 3/336 (0%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +++ I +  ++ L  +F+ +  A+I      PIY   + K        A++  +  + L 
Sbjct: 15  LLLLITIGFIWVLAPYFSALFWAVIFAVLFRPIYLKLLEKMPGKRNLSALLTLILAIILG 74

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           I+P+  +      +  +L  KV     +       + +       S L   H++   S +
Sbjct: 75  IIPIGIIATSLTSQAVDLYQKVESGQINFGEYVDLVYNNLPSPIHSFLEKFHITSEFSFR 134

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                 L   G   +             + + +  M+  ++FF RDG +I + +      
Sbjct: 135 EKL-LQLFNQGSKMMATELVNISQNTFTFIMDLGIMLYLMYFFIRDGETIKEYIKRFTP- 192

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L   +  K+      V+R+T  G  ++AI +G + G  + + G+PS +  GVI A ++++
Sbjct: 193 LSGNHKIKLFSKFLTVVRATVKGNMLVAIAQGALGGFIFAVLGIPSPILWGVIMAFLSLL 252

Query: 255 PG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P  GA + +  V+IYLL+ G++     L +WG + + + D  LRP LVG   +LP     
Sbjct: 253 PAIGAALVWLPVAIYLLVSGSLVEGIILMVWGVVVIGMSDNLLRPILVGKDTRLPDYLIL 312

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
              +GG+   GL G  IGP+L AL    W E   A+
Sbjct: 313 ITTIGGMAVFGLNGFVIGPLLAALFITFWGELPNAV 348


>gi|217968723|ref|YP_002353957.1| hypothetical protein Tmz1t_0268 [Thauera sp. MZ1T]
 gi|217506050|gb|ACK53061.1| protein of unknown function UPF0118 [Thauera sp. MZ1T]
          Length = 363

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 92/330 (27%), Positives = 162/330 (49%), Gaps = 7/330 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           S   L  F  PV  A+II F +WP+Y    ++     T  A++ T+ +   FI+P L++ 
Sbjct: 26  SYAVLHVFIVPVAWAIIIAFATWPLYRKLRARLRRYPTVSALLMTLLLSAAFILPALWMG 85

Query: 83  YYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPG-GMWASELWTKHLSHPQSLKILSETF 140
                E+   ++ V    + G + +P ++  +P  G W   L       P + +     +
Sbjct: 86  ALLRTEVGVAIATVTAQIKAGSLALPDFIRSMPWVGDWLQSLLDSLTGDPDAFRAQLTEW 145

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           ++      +       G         + F +I +FF YRDG  +  Q+  +         
Sbjct: 146 VRQGSDQAVA-LIGDVGRN----AAKLGFALITVFFLYRDGDRVLAQVQVVLHRFLGERV 200

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
                 V  + ++   G+   A+G+GLV G  YW AG+P+ V LG +TA++AMIP G P 
Sbjct: 201 DAYLAAVGGMTKAVVWGLIATALGQGLVAGLGYWWAGLPAPVLLGAVTALIAMIPFGTPF 260

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
           ++ ++ ++LL+ G+      L LWG + +  VD  +RP ++    ++PFL   FG++GG+
Sbjct: 261 AWGSLGVWLLVSGDTAAGIGLLLWGTLVVSWVDNLIRPLVISNATQIPFLLVMFGVLGGL 320

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
              GL+GLF+GPV++A++  +W+E I    
Sbjct: 321 AAFGLVGLFLGPVVLAVLMAVWREWIEESD 350


>gi|238765277|ref|ZP_04626205.1| hypothetical protein ykris0001_43250 [Yersinia kristensenii ATCC
           33638]
 gi|238696500|gb|EEP89289.1| hypothetical protein ykris0001_43250 [Yersinia kristensenii ATCC
           33638]
          Length = 367

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 71/359 (19%), Positives = 143/359 (39%), Gaps = 6/359 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R   L         IM +I+ S + ++ F      A ++   +WP+     +       
Sbjct: 6   LRRFDLPKLMFGVIFIMIMIIASFWVVQPFVMGFAWAGMVVIATWPLLIRLQNLLWGKRW 65

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWA 119
             A+I T+ ++ LF++P+  L    +     L+      +   +P   WL  +P  G   
Sbjct: 66  LAAIIMTILLILLFVIPIALLVSSLVENSGPLIQWASSPSNLKMPDVTWLKSVPLVGNKL 125

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              W   ++   ++ I            ++   A+  G   +   L ++F I+  F    
Sbjct: 126 YSGWHTLIAGGGNVLIAKVQPYVGAAATWLVAQAAHIGYFLIHLALMVLFSILLYF---- 181

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G  +   +              +  +  K IR+  LG+ + A+ + ++ G    +AG+ 
Sbjct: 182 HGEQVGLGIRHFAVRAADKRGDAVVVLAAKAIRAVALGVVVTALVQAVLGGIGLAIAGIQ 241

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
                 V+  I  +   G  +      I+L   G+    T L +W    +  +D  LRP+
Sbjct: 242 YATLFTVLMFICCVAQLGPLLIMIPAVIWLYWTGDSTWGTILLVWSC-VVGTMDNVLRPY 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L+     +P +    G++GG+ + G++GLFIGPV++A+   +    +    E +E I+ 
Sbjct: 301 LIRMEADMPMILILSGVIGGLLSFGMIGLFIGPVVLAISYRLTSAWVSEAPEPEESITE 359


>gi|115360276|ref|YP_777414.1| hypothetical protein Bamb_5533 [Burkholderia ambifaria AMMD]
 gi|115285564|gb|ABI91080.1| protein of unknown function UPF0118 [Burkholderia ambifaria AMMD]
          Length = 355

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 73/356 (20%), Positives = 142/356 (39%), Gaps = 9/356 (2%)

Query: 1   MRETMLN----PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           MRE  ++     Q    +++  + +   + L  F   V    I+     P+     ++  
Sbjct: 1   MREPSMDSGHDHQKFFYFLLFAVTVGLCWILAPFSGAVFWGTILAILFQPVQRWLAARFG 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPG 115
           +     A+++   ++ + I+PL+F+    + E+  +  ++  A  +        +  +P 
Sbjct: 61  KRRNLAALVSMSLIILIVILPLVFVTATLVQEIAYVYQELKDAQPNYSRYFHDIIHALPT 120

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
                 L  K+            T        F    A   G     + +S   M+  LF
Sbjct: 121 S--IQNLLQKYGLSNIPGIQKKLTDGAAQISQFAATQALSIGQNTFQFVVSFGVMLYMLF 178

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F  RDG  I +++      L   +   +      V+R+T  G   +A+ +G + G  +W+
Sbjct: 179 FLLRDGGEIGRRVRR-SIPLDEEHKNLLLAKFTTVVRATVKGNIAVALVQGALGGLIFWI 237

Query: 236 AGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
            G+   V  G + A ++++P  GA + +   ++Y L  G I+    L  +    + +VD 
Sbjct: 238 LGIEGVVLWGALMAFLSLLPAIGASLVWIPAALYFLAIGAIWKCVILVAFCVGVIGLVDN 297

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            LRP LVG   K+P        +GG+   G+ G  IGP++ AL    W     + +
Sbjct: 298 LLRPILVGKDTKMPDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIYARSEQ 353


>gi|323529942|ref|YP_004232094.1| hypothetical protein BC1001_5660 [Burkholderia sp. CCGE1001]
 gi|323386944|gb|ADX59034.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1001]
          Length = 372

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 93/348 (26%), Positives = 174/348 (50%), Gaps = 7/348 (2%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEESST 60
           E +   +     + + ++L++L+ ++ F   V  A ++    WP+             +T
Sbjct: 29  ERVKKQKAASLALYIGLVLLALWVVRDFLPVVGWAGVLAIALWPLLRRVEGSRWLSGRTT 88

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            +AV+ T+++  L ++P+       + E  +L      A + GI +P ++  +P G   +
Sbjct: 89  LIAVVLTLAIALLVVLPVGIGIAQALREAHDLSDWFKAAQETGIAMPDFIHRLPFGAREA 148

Query: 121 E-LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           E  W  +L+ P    +     +K      +      FG   +       FM++ LF  ++
Sbjct: 149 EAWWQAYLAAP----LRDSAAMKGLHSTTVVTLGRHFGARAVHAVTVFAFMLVTLFVIFQ 204

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G  +S  L    +  F     ++   +   +R T  G+ ++ +GEG +LG AY++ G+P
Sbjct: 205 AGPRLSGALARGLQRGFGEDGAQLVERMAIAVRGTVSGLVVVGLGEGALLGVAYFVTGLP 264

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               L +ITAI AM+P  API+F   +++L  +G++  A  L ++G++ +F+ +  +RP 
Sbjct: 265 HVALLALITAIAAMLPFCAPITFGLAALWLFSQGSVAGAIGLLVFGSVVVFVAEHFVRPV 324

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           L+G   +LPFL   FG++GG  T GLLGLFIGP LM ++ V+W + + 
Sbjct: 325 LIGSSTRLPFLLVLFGILGGAETFGLLGLFIGPALMTVLMVLWTDLVQ 372


>gi|28870542|ref|NP_793161.1| hypothetical protein PSPTO_3378 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28853790|gb|AAO56856.1| membrane protein, putative [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 354

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 75/322 (23%), Positives = 139/322 (43%), Gaps = 3/322 (0%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             ++ L  F+  V  A+I+G    P+      K        ++      + + I+P++ +
Sbjct: 21  AFIWILLPFYGAVFWAVILGIIFAPVQRRLQIKFNWPRNLTSLCTLTICLVIAILPVIVI 80

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E   L   V               ++      + L    +   + L+       
Sbjct: 81  SALLVQEGTTLYKNVETGQLDIAGYLAEFKNLLPHSIQALLDRLGMGDLEGLRDKITK-G 139

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
              G  ++   A  FG    D+ +S+  M+  L+FF RDG  + +++ +    L     +
Sbjct: 140 AMQGSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRDGQELVRKIRTAFP-LGEQQKR 198

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPI 260
           ++     +V+R+T  G  ++A+ +G + G  +W   +PS +   VI A ++++P  GA I
Sbjct: 199 RLQLKFTRVVRATVKGNVVVAVTQGALGGFIFWALDIPSALLWAVIMAFLSLLPAVGAGI 258

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +  V++Y L+ G I+    L L+G   + +VD  LRP LVG   K+P        +GG+
Sbjct: 259 VWAPVALYFLLSGMIWQGVVLGLFGVFVIGLVDNVLRPILVGKDTKMPDYLILISTLGGM 318

Query: 321 RTMGLLGLFIGPVLMALIAVIW 342
              GL G  IGP++ AL    W
Sbjct: 319 SVFGLNGFLIGPLIAALFISSW 340


>gi|319945201|ref|ZP_08019463.1| permease [Lautropia mirabilis ATCC 51599]
 gi|319741771|gb|EFV94196.1| permease [Lautropia mirabilis ATCC 51599]
          Length = 433

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 71/348 (20%), Positives = 148/348 (42%), Gaps = 5/348 (1%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
            +  + L  L  L  F++ ++ A+I+     P+  + + +  + +     I   +V+ + 
Sbjct: 14  FLALVSLAFLAILLPFYSALMWAVILAMLFAPMQRALMRRMPQRANTATFITLGAVIMMV 73

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           I+P++ L    + +  ++ S++   +   G  + + +  +PG +         L  P   
Sbjct: 74  IIPVIGLTMSLVNQGAQIYSRIRSGDLNFGAYLAKIIEAMPGWLHRMLDAQGLLDLPSIQ 133

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           + L+++   +    F+   A   G   +D   S   ++  LFF  RDG  +         
Sbjct: 134 RRLADS--GSEIGQFLASQAVNIGQNTVDALASTGVLLYVLFFLLRDGGQLVAMFYR-AI 190

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            L       +      V+++T  G   +AI +G++ G   W  G+   +   V+ A +++
Sbjct: 191 PLEDEPKNHLLGKFSAVVKATVKGNVAVAIVQGVLGGIILWALGIKGVILWSVVMAFLSL 250

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +P  G+ + +  +++Y L  G  +    L  +G   + +VD  LRP LVG   K+P    
Sbjct: 251 LPAVGSGLIWGPIALYFLATGATWQGVVLLAYGVGVIGMVDNVLRPVLVGKNTKMPDYVV 310

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
               +GG+   GL G  IGP++ AL    W   +   ++  E++    
Sbjct: 311 LVSTIGGMSLFGLNGFVIGPLIAALFMAAWDLYVAPDRDRDEEVHEAL 358


>gi|123442436|ref|YP_001006415.1| putative inner membrane protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089397|emb|CAL12245.1| putative membrane protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 367

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 74/359 (20%), Positives = 143/359 (39%), Gaps = 6/359 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R   L         IM +I+ S + ++ F      A ++   +WP+             
Sbjct: 6   LRRFDLPKLMFGVIFIMIMIIASFWVVQPFIMGFAWAGMVVIATWPLLIWLQKILWGKRW 65

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWA 119
             A+I T+ ++ LF++P+  L    +     L+      +   +P   WL  IP  G   
Sbjct: 66  LAAIIMTILLILLFVIPIALLVSSLVENSGPLIQWASSPSNLKMPDVTWLKSIPMVGNKL 125

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              W   ++   +L I            ++   A+  G   +   L ++F I+  F    
Sbjct: 126 YSGWHSLIAGGGNLLIAKIQPYVGAAATWLVAQAAHIGYFLIHLALMVLFSILLYF---- 181

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G  +   +              +  +  K IR+  LG+ + A+ + ++ G    +AG+ 
Sbjct: 182 HGEQVGLGIRHFAVRAADKRGDAVVVLAAKAIRAVALGVVVTALVQAVLGGIGLAIAGIQ 241

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
                 V+  I  +   G  +      I+L   G+    T L +W  I +  +D  LRP+
Sbjct: 242 YATLFTVLMFICCVAQLGPLLILIPAVIWLYWTGDSTWGTILLVWSCI-VGTMDNVLRPY 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L+     +P +    G++GG+ + G++GLFIGPV++A+   +    +    E +E I+ 
Sbjct: 301 LIRMEADMPMILILSGVIGGLLSFGMIGLFIGPVVLAISYRLTSAWVNEAPEPEESITE 359


>gi|172062740|ref|YP_001810391.1| hypothetical protein BamMC406_3708 [Burkholderia ambifaria MC40-6]
 gi|171995257|gb|ACB66175.1| protein of unknown function UPF0118 [Burkholderia ambifaria MC40-6]
          Length = 355

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 70/350 (20%), Positives = 140/350 (40%), Gaps = 5/350 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E+  + Q    +++  + +   + L  F   V    I+     P+     ++  +     
Sbjct: 7   ESGHDHQKFFYFLLFAVTVGLCWILAPFSGAVFWGTILAILFQPVQRWLAARFGKRRNLA 66

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWASE 121
           A+++   ++ + I+PL+F+    + E+  +  ++  A  +        +  +P       
Sbjct: 67  ALVSMSLIILIVILPLVFVTATLVQEIAYVYQELKDAQPNYSRYFHDIIHALPTS--IQN 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L  K+            T        F    A   G     + +S   M+  +FF  RDG
Sbjct: 125 LLQKYGLSNIPGIQKKLTDGAAQISQFAATQALSIGQNTFQFVVSFGVMLYMVFFLLRDG 184

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I +++      L   +   +      V+R+T  G   +A+ +G + G  +W+ G+   
Sbjct: 185 GEIGRRVRR-SIPLDEEHKNLLLAKFTTVVRATVKGNIAVALVQGALGGLIFWILGIEGV 243

Query: 242 VALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           V  G + A ++++P  GA + +   ++Y L  G I+    L  +    + +VD  LRP L
Sbjct: 244 VLWGALMAFLSLLPAIGASLVWIPAALYFLAIGAIWKCVILVAFCVGVIGLVDNLLRPIL 303

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           VG   K+P        +GG+   G+ G  IGP++ AL    W     + +
Sbjct: 304 VGKDTKMPDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIYARSEQ 353


>gi|152980908|ref|YP_001355199.1| hypothetical protein mma_3509 [Janthinobacterium sp. Marseille]
 gi|151280985|gb|ABR89395.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 359

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 89/356 (25%), Positives = 154/356 (43%), Gaps = 8/356 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           M  P+   +  +  +I  SL F   L  F+  V  A ++     P Y   + K  + S  
Sbjct: 1   MNYPEIQQKTFLALLIAFSLAFIGILLPFYGAVFWAAVLAILFSPFYRKLLIKMNQRSNL 60

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWAS 120
            A+      + + I+PL+ +    + E   L S +        +   + ++ +P   W  
Sbjct: 61  AALTTLGICLVVVILPLVLISISLVHEATNLYSNIRSGQLNFSVYFEKVVAALP--TWVV 118

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
               K      +      +     G +FI + A   G    ++ +S   M+  LFF  RD
Sbjct: 119 NQMDKFGLTNIATLQAKLSQAAVQGSEFITKQAISIGQNTFNFLISFTIMLYMLFFLLRD 178

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  I+ ++      L P + + +   +   IR+T  G  I+A  +G + G A+W  GV  
Sbjct: 179 GDKIAARIRQAAP-LNPDHKRTLFNNLTTAIRATVKGNIIVAAVQGALGGVAFWFLGVQG 237

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  GV+ A ++++P  GA + +  V+IY L+ G I+    L  +G + + +VD  LRP 
Sbjct: 238 ALLWGVLMAFLSLLPAVGAALIWVPVAIYFLLTGAIWQGVTLIAFGVLVIGLVDNILRPI 297

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           LVG    LP        VGG+  +GL G  IGPV+ AL   +W       ++ + +
Sbjct: 298 LVGKDTALPDFVVLISTVGGMALLGLNGFVIGPVIAALFMTLWDIFSSGKQKQEAE 353


>gi|186472140|ref|YP_001859482.1| hypothetical protein Bphy_3280 [Burkholderia phymatum STM815]
 gi|184194472|gb|ACC72436.1| protein of unknown function UPF0118 [Burkholderia phymatum STM815]
          Length = 361

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 95/350 (27%), Positives = 168/350 (48%), Gaps = 8/350 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK--KEES 58
           M       +     +   +++++L+ ++ F   +  A +I    WP +         +  
Sbjct: 14  MPNRRKMQRIASAALYAAMVVLALWVIRDFVPAIAWACVIAIALWPAFHRIEEHKFFKGR 73

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM- 117
           ST +A + T+++  LF++P+         E  +++       ++GIPVP ++  +P G  
Sbjct: 74  STLIATVLTIAIGLLFLLPVGIGIAQAASEAHDVIEWARGVQENGIPVPDFVQHLPFGAA 133

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                W  +LS P    +     +K      +  F   FG       +   FM++ LF  
Sbjct: 134 QIGSWWQDNLSQP----LRDSPAMKGLHGGAVVTFGRHFGARAAHALMLFAFMLVTLFVI 189

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
           ++ G  +S +L       F      +   +   +R T  G+ ++ IGEG +L  AY L G
Sbjct: 190 FQAGPKLSCELMKGVRRAFGYDGMHLFERMAAAVRGTVSGLVVVGIGEGALLLVAYMLTG 249

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI-KGNIFNATCLFLWGAIELFIVDKTL 296
           VP    LG +TAI AM+P  AP+ F   ++++ + +G +  A  L ++G + +F+ +  +
Sbjct: 250 VPHAALLGFVTAIAAMLPFCAPVVFCGAALWIFVEQGALIPAIGLAVFGFVVVFVAEHFV 309

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           RP L+G   +LPFL   FG++GG  T GLLGLF+GP LM ++ V+W E I
Sbjct: 310 RPVLIGSSARLPFLLVLFGILGGAETFGLLGLFVGPALMTVLMVLWTEWI 359


>gi|188533650|ref|YP_001907447.1| Conserved hypothetical protein (UPF0118) [Erwinia tasmaniensis
           Et1/99]
 gi|188028692|emb|CAO96554.1| Conserved hypothetical protein (UPF0118) [Erwinia tasmaniensis
           Et1/99]
          Length = 379

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 80/359 (22%), Positives = 144/359 (40%), Gaps = 10/359 (2%)

Query: 9   QGIMRWMIMFIILVS----LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           QGI +   +FI+  +     + L  +F+ +L A I+     P+ S       + +   ++
Sbjct: 4   QGISKGFFIFILAATTLGFFHILGPYFSAILWAAILAIIFHPLKSKIRKYCRDKNGLASL 63

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMWASELW 123
           I    +  +  +PL  +     +E   L S++         V    ++ +P   W     
Sbjct: 64  ITLFIICLIVFIPLAVVASSLAIEFNALYSRIQGDQTELTTVAASVVNHLP--DWLRHFL 121

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            ++  +  S      + +   G  F        G     + +    M+  LFF  +DG  
Sbjct: 122 AENNLNDASAIQQKLSGVAMKGGQFFAGSLMMIGKSTFSFTIGFGIMLYLLFFLLKDGAY 181

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +          L       +      V R+T  G  ++A+ +G + G A+W AG+   + 
Sbjct: 182 LVGMALDAIP-LSRFVKHHLFVKFAAVSRATVKGTVVVAVVQGTLGGIAFWFAGIQGSIL 240

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G + A +++IP  G+ I +  V +Y    G +     L  +  + + +VD  LRP LVG
Sbjct: 241 WGSLMAFLSLIPAVGSAIIWLPVVLYFFFSGAMIKGLLLTFFFVVVIGLVDNILRPLLVG 300

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK-ESIMAIKENKEKISSNF 360
              K+P        +GG+   G+ G  IGP++ AL    W   S    K N +KI S+F
Sbjct: 301 KDTKMPDYLILISTLGGMEIYGINGFVIGPLIAALFISCWNLLSGRDHKGNTDKIDSDF 359


>gi|308185989|ref|YP_003930120.1| UPF0118 inner membrane protein ydiK [Pantoea vagans C9-1]
 gi|308056499|gb|ADO08671.1| UPF0118 inner membrane protein ydiK [Pantoea vagans C9-1]
          Length = 412

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 72/333 (21%), Positives = 136/333 (40%), Gaps = 6/333 (1%)

Query: 14  WMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
            +I+ I  V+ +  L  +F+P+L A I+     P+ +   S+  + +   A+I    +  
Sbjct: 12  ILILAIATVAFFEVLSPYFSPILWAAILAVIFHPLKTWLRSRLGDRNGVAALITLFCICL 71

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVL-ANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
           +   PL  +    ++E   +  K+   ++Q        L  +P   WA     ++     
Sbjct: 72  IVFTPLAIIASSLVVETNAVYHKLQTNSSQFPAVFADLLQHLP--RWAKHFLAENNLDNA 129

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                  +     G  ++   A   G     + +    M+  LFF  +DG  +   +   
Sbjct: 130 EQIQQKLSSFALKGGQYVAGSAFIIGKGTFSFTVGFGIMLYLLFFLLKDGSYLVHLILEA 189

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L       +      V R+T  G  ++ I +G++ G A+W  G+   +  G + A +
Sbjct: 190 LP-LSTYVKHHLMVKFAAVARATVKGTVVVGIVQGILGGLAFWFTGIDGSLLWGALMAFL 248

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           ++IP  G+ I +   +I+    G ++    L  +  + + +VD  LRP LVG   K+P  
Sbjct: 249 SLIPAVGSAIIWVPAAIFFFATGALWKGLFLVGFFVVIVGLVDNILRPLLVGKDTKMPDY 308

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                 +GG+   G+ G  IGPV+ AL    W 
Sbjct: 309 MILIATLGGMEIYGINGFVIGPVIAALFIACWN 341


>gi|194288785|ref|YP_002004692.1| hypothetical protein RALTA_A0641 [Cupriavidus taiwanensis LMG
           19424]
 gi|193222620|emb|CAQ68623.1| conserved hypothetical protein, DUF20; putative membrane protein
           [Cupriavidus taiwanensis LMG 19424]
          Length = 394

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 75/357 (21%), Positives = 144/357 (40%), Gaps = 7/357 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M    L  +    + ++ +I  SL  L  F   +L   I+ F+SW  Y+           
Sbjct: 1   MSSGQLIEKIAAVFALIVLIGGSLLVLAPFTTALLWGAILAFSSWHPYTVLSRWLGNRRG 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMW 118
             A+I  +    + + P ++        + +L + V    + G+P +P WLS +P  G +
Sbjct: 61  LAALICVLLATVIVLGPFVYAGASFSAHLDDLAALVDRYMEQGLPQLPLWLSSLPYVGSY 120

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
               W   ++    +       +   G   +       G       LSII      FFFY
Sbjct: 121 LQNSWDSVINADSEMVANLRKLIAPVGHVLLGA-GLSIGAGLGQLALSIILA----FFFY 175

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
             G      L +    +       +  +    ++    G+   A  + ++ G   W+AGV
Sbjct: 176 TGGEFAIAWLRAGMRRIAGERADHLLELAGSTVKGVVYGVLGTAFIQAVLAGIGLWIAGV 235

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P    LG +T  ++++P G P+ +   +++L   G    A  L +WG   + + D  ++P
Sbjct: 236 PGAAILGFVTFFLSVVPVGPPLVWLPAALWLYHTGATGWAIFLVVWGVGVVSMADNIVKP 295

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            L+     +P +    G++GG    G LG+FIGP L+A+   + ++  +  +   ++
Sbjct: 296 LLISKGTGMPLIWIMLGVLGGALAFGFLGVFIGPTLLAVAYALLRDWTIGSQGELQR 352


>gi|330882685|gb|EGH16834.1| putative lipoprotein [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 321

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 75/308 (24%), Positives = 140/308 (45%), Gaps = 7/308 (2%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             L+ +  F++ ++   ++ F SWP+        +   +  A++  +  M L   PL++L
Sbjct: 19  ACLWVMAPFWSALIWGAVLAFASWPLMRLLTRWFKGRESLAALVMCLCWMLLVAAPLVWL 78

Query: 82  FYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSET 139
            +     +++    +      G+P  P+WL+ IP  G     LWT       +     + 
Sbjct: 79  GFNLADHVRDATGLIKDIQVDGLPDPPQWLAGIPLVGERLVALWTTIDQQGAAFMATLKP 138

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            L   G   + R A + G   L+  LSI+F     FFFYRDG  ++  + SL E L    
Sbjct: 139 HLGQVGNWVLARSA-QIGSGILELTLSIVFA----FFFYRDGPRLAAFVLSLLERLIGDR 193

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            +    +V   ++    G+   A  + ++    + +AG+P  + LG++T + ++IP G P
Sbjct: 194 AQYYLDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALVLGILTFLFSLIPMGPP 253

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +   + +L+ +G    A  L +WG   +  VD  L+P+L+     LP +    G+ GG
Sbjct: 254 LVWLPATAWLVWQGEYGMAIFLGIWGMFIISGVDNVLKPYLISRGGNLPLVIVLLGVFGG 313

Query: 320 VRTMGLLG 327
           +   G +G
Sbjct: 314 LLAFGFIG 321


>gi|310767844|gb|ADP12794.1| hypothetical protein EJP617_31130 [Erwinia sp. Ejp617]
          Length = 372

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 75/355 (21%), Positives = 143/355 (40%), Gaps = 6/355 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G   +++    L  L+ L  +F+ +L A I+     P+ S       + +   +++  +
Sbjct: 8   KGFFIFILAITTLGFLHILGPYFSAILWAAILAIIFHPLKSKIGKYCGDRNGLASMLTLL 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP-RWLSDIPGGMWASELWTKHL 127
            +  +  +PL  +     +E   L +++         V    ++ +P   W      ++ 
Sbjct: 68  IICLIVFIPLAVVASSLAVEFNALYNRIQANQTELTTVATSVVNHLP--EWLRHFLAENN 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +      + +   G  F        G     + +    M+  LFF  +DG  +   
Sbjct: 126 LTDANAIQQKLSGVAMKGGQFFAGSLMMIGKSTFSFTIGFGIMLYLLFFLLKDGAYLVGM 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                  L       +      V R+T  G   +A+ +G + G A+W AG+   +  G +
Sbjct: 186 ALDAIP-LSRFVKHHLFVKFAAVSRATVKGTVAVAVVQGTLGGIAFWCAGIQGSILWGSL 244

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A +++IP  G+ I +  V I+LL  G +     L  +  + + +VD  LRP LVG   K
Sbjct: 245 MAFLSLIPAVGSAIIWLPVVIWLLFSGAMVKGLALTFFFVVVIGLVDNILRPLLVGKDTK 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK-ESIMAIKENKEKISSNF 360
           +P        +GG+   G+ G  IGP++ AL    W   S    + N ++I S+F
Sbjct: 305 MPDYLILISTLGGMEIYGINGFVIGPLIAALFISCWNLLSGRESRGNTDEIDSDF 359


>gi|171317803|ref|ZP_02906983.1| protein of unknown function UPF0118 [Burkholderia ambifaria MEX-5]
 gi|171097027|gb|EDT41884.1| protein of unknown function UPF0118 [Burkholderia ambifaria MEX-5]
          Length = 356

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 90/326 (27%), Positives = 159/326 (48%), Gaps = 7/326 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+   F          T +A + TV V  L ++P+    
Sbjct: 35  WVIRDFLPAIAWACVIAIALWPLLKRFESDRWFRNRPTLIATVITVGVSLLVVLPVALAL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-MWASELWTKHLSHPQSLKILSETFL 141
              + +  +L   +     +GIP+P +++ +P G    ++ W  +L HP    + + T +
Sbjct: 95  GQAISQEHDLRMWLHSIQDNGIPLPDFIARLPYGAAQITDWWQANLGHP----LHAGTAM 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                +    F  +FG           FM++ LF   R G  +S  +       F     
Sbjct: 151 HGATGEKFIAFGRQFGTKLAHALFEFGFMLVTLFVILRAGHKLSGAMLHGARRAFGPGGG 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           ++   +   +  T  G+ ++ +GEG +LG AY LAGVP    LG++TA+ AM+P  API 
Sbjct: 211 ELIERMVAAVYGTVTGLVVVGLGEGAILGIAYALAGVPHAALLGLVTAVAAMLPFCAPIV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G    A  + + G + +F+ +  +RP L+G   +LPFL   FG++GG  
Sbjct: 271 FCGAALWLFVQGATVWAVVVLVVGFVVVFVAEHFVRPVLIGSSTRLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIM 347
           T GL+GLF+GP LM ++ ++W E + 
Sbjct: 331 TFGLIGLFVGPALMTVLTMLWAEWVA 356


>gi|238749448|ref|ZP_04610953.1| hypothetical protein yrohd0001_27650 [Yersinia rohdei ATCC 43380]
 gi|238712103|gb|EEQ04316.1| hypothetical protein yrohd0001_27650 [Yersinia rohdei ATCC 43380]
          Length = 367

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 70/346 (20%), Positives = 140/346 (40%), Gaps = 6/346 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             I+ +IL S + ++ F      A ++   +WP+     +          +I T+ ++ L
Sbjct: 19  IFILIMILASFWVIQPFVMGFAWAGMVVIATWPLLIRLQNLLWGKRWLAVIIMTLLLVLL 78

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           F++P+  L    +     L+      +   +P   WL  IP  G      W   ++   +
Sbjct: 79  FVIPIGLLVSSLVENSGPLIQWASSPSNLRMPDVTWLKTIPMVGDKLYSGWYTLIAGGGN 138

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             I          + ++   A+  G   +   L ++F ++  F     G  +   +    
Sbjct: 139 ALIAKVQPYIGAAVTWLVAQAAHVGYFLIHMALMLLFSVLLYF----HGEQVGLGIRHFA 194

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                     +  +  K IR+  LG+ + A+ + ++ G    LAG+     L V+  I  
Sbjct: 195 VRAADKRGDAVVVLAAKAIRAVALGVVVTALVQAVLGGIGLALAGIQYATLLTVLMFICC 254

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +   G  +      I+L   G+    T L +W  I +  +D  LRP+L+     +P +  
Sbjct: 255 VAQLGPLLILIPAIIWLYWTGDNTWGTILLVWSCI-VGTMDNVLRPYLIRMEADMPMILI 313

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G++GG+ + G++GLFIGPV++A+   +    +    E +E +  
Sbjct: 314 LSGVIGGLLSFGMIGLFIGPVVLAISYRLTAAWVSEAPEPEESLQE 359


>gi|327393717|dbj|BAK11139.1| UPF0118 inner membrane permease protein YdiK [Pantoea ananatis
           AJ13355]
          Length = 376

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 68/353 (19%), Positives = 143/353 (40%), Gaps = 8/353 (2%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R+  L         I+ +I   L+ ++ F      A ++   +WP+            + 
Sbjct: 16  RQIDLPQMLFTLIFILLLIAACLWVVQPFILGFAWASMVVIATWPLMLKIQRLLWGRRSL 75

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWAS 120
             ++ T+ ++ LFI+P+  L    +     +++       H +P   WL+DIP  G    
Sbjct: 76  AVIVMTILLLLLFIIPVALLVNSLIDNSAPVIAWATQG--HMLPTLSWLNDIPMVGEKLY 133

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             + K ++   +  +            F    A  FG   +   + ++F ++     Y  
Sbjct: 134 ASYQKLVAGGGAAIMAKLQPYVGRTTGFFVAQAGHFGRFMIHLAVMLLFSVL----LYWR 189

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G   +Q +      +          +  + +R+  LG+ + A+ +G++ G    ++G+P 
Sbjct: 190 GEQAAQGIRHFAWRMAGRRGDAAVLLAGQAVRAVALGVVVTALVQGVLGGIGLAVSGIPY 249

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G  +      +YL   G+    T L +W    +  +D  LRP L
Sbjct: 250 ATLLTVLMILCCLVQIGPLLVLVPAIVYLYWSGDTTWGTVLLIWSC-VVGTLDNILRPVL 308

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +     LP +    G++GG+   G++GLFIGPV++A+   +    +  +   +
Sbjct: 309 IRMGADLPLILILSGVIGGLIAFGMIGLFIGPVVLAVSYRLVSVWMHEVPAPQ 361


>gi|161501878|ref|YP_049952.2| putative inner membrane protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 370

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 74/347 (21%), Positives = 139/347 (40%), Gaps = 6/347 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             I  +I+   + ++ F      A ++   +WP+   F +      +   ++ T+ ++ L
Sbjct: 20  VFITIMIIACFWVVQPFILGFAWACMVVIATWPMLIKFQALLWGRRSLAVLVMTLLLILL 79

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           F+VP+  L    +     L+S          P   WL+ IP  G      W   L    S
Sbjct: 80  FVVPIAVLVSSVIDNSSALMSWGSRQENLSPPTLEWLTSIPLVGEKLFNSWQALLQSGGS 139

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                          ++   A+  G   +   L +IF  +     Y  G ++++ +    
Sbjct: 140 GLFAKVQPYFGKTATWLVAQAAHVGRFLMHCSLMLIFSAL----LYYKGEAVAKAVRHFA 195

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + AI + ++ G    L+G+P    L V+  +  
Sbjct: 196 IRLGRERGDAAVILAAQSIRAVALGVVVTAIVQSVLGGIGLGLSGIPYTTLLTVLMFLCC 255

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +   G  +      I+L   G+    T L +W    +  +D  +RP L+     LP L  
Sbjct: 256 LAQLGPLLVLIPAIIWLYWTGDNTWGTILLVWSC-VVGTIDNVIRPMLIRMGADLPMLLI 314

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             G++GG+   G++GLFIGPV++A+   +    +  I E +  +S N
Sbjct: 315 LSGVIGGLLAFGMIGLFIGPVVLAVSYRLLFAWMREIPEPQNLLSVN 361


>gi|172063209|ref|YP_001810860.1| hypothetical protein BamMC406_4180 [Burkholderia ambifaria MC40-6]
 gi|171995726|gb|ACB66644.1| protein of unknown function UPF0118 [Burkholderia ambifaria MC40-6]
          Length = 356

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 92/326 (28%), Positives = 157/326 (48%), Gaps = 7/326 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSF--ISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+   F          T +A + TV V  L I+P+    
Sbjct: 35  WVIRDFLPAIAWACVIAIALWPLLKRFESERWFRNRPTLIATVITVGVSLLVILPVALAL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-MWASELWTKHLSHPQSLKILSETFL 141
              + +  +L   +     +GIP+P  ++ +P G    +E W  +L HP    + +   +
Sbjct: 95  GQAISQEHDLRMWLQSVQDNGIPLPDVIARLPYGAAQVTEWWQANLGHP----LHAGAAM 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                +    F  +FG           FM++ LF   R G  +S  L       F     
Sbjct: 151 HGASGEKFIAFGRQFGTKVAHALFEFGFMLVTLFVILRAGHKLSGALLHGARRAFGPGGG 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           ++   +   +  T  G+ ++ +GEG +LG AY LAGVP    LG++TA+ AM+P  API 
Sbjct: 211 ELIERMVAAVYGTVTGLVVVGLGEGAILGVAYALAGVPHAALLGLVTAVAAMLPFCAPIV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G    A  + + G + +F+ +  +RP L+G   +LPFL   FG++GG  
Sbjct: 271 FCGAALWLFVQGATVWAVVVLVVGFVVVFVAEHFVRPVLIGSSTRLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIM 347
           T GL+GLF+GP LM ++ ++W E + 
Sbjct: 331 TFGLIGLFVGPALMTVLTMLWAEWVA 356


>gi|254428305|ref|ZP_05042012.1| conserved domain protein, putative [Alcanivorax sp. DG881]
 gi|196194474|gb|EDX89433.1| conserved domain protein, putative [Alcanivorax sp. DG881]
          Length = 371

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 90/356 (25%), Positives = 156/356 (43%), Gaps = 8/356 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           MR+T ++ +   R  +  ++ VS  F   ++ FFAP+  A  I    +P +   +++  +
Sbjct: 1   MRDTGISEKLEQRAFLFSLVAVSAVFALLIQPFFAPIFWACAISVIFYPFHKRLLARWPQ 60

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
               +A+   +  + L ++P+L +    + E   L  KV       I +  ++  I    
Sbjct: 61  RRNLVALFTLLLCVVLVVIPVLAVATSFVSEGVGLFQKVQSGE---IDLASYVDKIKHAF 117

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
              +   +                 T    F+ + A   G     + L++  M+   FF 
Sbjct: 118 PGVQSLAERFDVDLEKIKEQAVKAFTGAGQFLAKRALAVGQNTFQFFLNLGLMLYLAFFL 177

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            RDG S+   L      L     K +     +V R+T  G  ++AI +G + G  +W  G
Sbjct: 178 IRDGDSMVAMLIRALP-LGDEREKLLFAKFAEVTRATIKGNLLVAITQGALGGLIFWWLG 236

Query: 238 VPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           +P  +  GV+ A++++IP  GA + +  V++YL   G++  AT L L+G   + +VD  L
Sbjct: 237 IPGALLWGVVMAVLSLIPAVGAGLIWFPVALYLYAVGDMKEATILILFGVFVIGLVDNLL 296

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           RP LVG   KLP     F  +GG+   G+ G  +GP+L AL    W   I    E 
Sbjct: 297 RPILVGRDTKLPDYVVLFSTLGGLAMFGITGFAVGPLLAALFVAFWGIFIREFNEE 352


>gi|56461267|ref|YP_156548.1| PerM family permease [Idiomarina loihiensis L2TR]
 gi|56180277|gb|AAV82999.1| Predicted permease PerM family [Idiomarina loihiensis L2TR]
          Length = 348

 Score =  219 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 82/350 (23%), Positives = 145/350 (41%), Gaps = 7/350 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           MRE++   +      ++ + +   + L  F+  +  A ++    +P+         +   
Sbjct: 1   MRESL--ERRSFLLTLILVSIAFAWVLIPFWGAIFWACVVTVIFYPLQQKLKKTFGDKPN 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A++  +  + + ++P L + Y  + E      ++   ++  I   +   DI       
Sbjct: 59  RAALVTLLIALVIVVIPALGISYSFVQEGVSFYQRL---DEGKINPGKLFDDIQKAFPVI 115

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                      S      +    +G  F+   A   G     + +S+  MI   FF  RD
Sbjct: 116 SDLLAQFDIKASDVREKISSGAVSGSKFLAEEALSIGQNTFSFIISLSLMIYLTFFLLRD 175

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +   L      L     +K+     +V R+T  G  ++AI +G + G  + L G+P 
Sbjct: 176 GHLLIDLLVKALP-LGDERERKLFTKFAEVTRATVKGNIVVAIVQGTLGGIIFALLGIPG 234

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  GV+ A +++IP  GA + +  VSIYL   GN    T L  +GAI + + D  LRP 
Sbjct: 235 ALLWGVVMAFLSLIPAVGASLVWLPVSIYLYATGNWIAGTILVAYGAIVIGLADNVLRPV 294

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           LVG   KLP     F  +GG+   G+ G  +GP++ AL  V W   +   
Sbjct: 295 LVGRDTKLPDYLVLFSTLGGLSLFGITGFVLGPLVAALFLVFWDIFMNEF 344


>gi|146310488|ref|YP_001175562.1| hypothetical protein Ent638_0826 [Enterobacter sp. 638]
 gi|145317364|gb|ABP59511.1| protein of unknown function UPF0118 [Enterobacter sp. 638]
          Length = 369

 Score =  219 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 74/337 (21%), Positives = 143/337 (42%), Gaps = 5/337 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G    ++  + L     L  +F+ VL A I+     P+ +   S   E +   +++  V
Sbjct: 8   KGFFILILAIVSLAFFDILAPYFSAVLWASILAVIFHPVKNKLRSMMGERNGLASLLTLV 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHL 127
            +  +   PL+ +     +E+  + +K+   N Q    V    + +P   WA      H 
Sbjct: 68  IICLIVFTPLIVILSSLAIELNVVYTKLQHTNSQFPEVVASLFAHLP--EWARNFLVDHN 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +      +     G  ++   A   G     + +S   MI  LFF  +DG  + +Q
Sbjct: 126 LDNAAQIQQKLSDAALKGGQYLAGSAFLIGKGTFGFAISFGIMIYLLFFLLKDGPYLVRQ 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L     + +      V R+T  G  ++A+ +G++ G A+++AG+   +  G +
Sbjct: 186 ILD-SLPLSDFVKQHLFAKFAAVSRATVKGTVVVALVQGILGGIAFYIAGIDGSILWGAL 244

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A +++IP  G+ I +   +++L     ++    +  +  I + +VD  LRP LVG   K
Sbjct: 245 MAFLSLIPAVGSAIIWVPAAVFLFATQQLWQGFFIVGFFVIIVGLVDNILRPLLVGKDTK 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +P        +GG+   G+ G  IGP++ AL    W 
Sbjct: 305 MPDYLILISTLGGMEIYGINGFVIGPLIAALFIACWN 341


>gi|254711673|ref|ZP_05173484.1| hypothetical protein BpinB_15754 [Brucella pinnipedialis B2/94]
          Length = 352

 Score =  219 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 76/352 (21%), Positives = 149/352 (42%), Gaps = 7/352 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     ++  + +   + L  ++  VL A+I+    +P+    +          A 
Sbjct: 1   MSVQRASFYILLTLVTIAFAWLLIPYYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAF 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW--ASEL 122
           ++ +  +CL I+P+L +F   + E   L  ++         +  +++ I   +     E 
Sbjct: 61  LSVLMCICLVIIPMLAIFGSLVDEGTSLYQRLSSRE---FDINGYIARIMAALPESLEEW 117

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             +      +      + +   G          FG   L + +    M+  LFF +RDG 
Sbjct: 118 LKRFELGTFADWRARISSVVMQGSQLFAARLVSFGQNTLQFFIGFGIMLYLLFFLFRDGA 177

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + +++      L   Y ++       VIR+T  G  IIAI +G+  G  +WL G+ + +
Sbjct: 178 DVGKKIRRAIP-LSDDYTRQFLEKFTAVIRATVKGNIIIAIIQGMNGGVTFWLLGIEAAL 236

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             GVI    +M+P  GA + +T  +++  + G+ ++   L + G + + +VD  LRP LV
Sbjct: 237 LWGVIMTFCSMLPAVGAALVWTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLV 296

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G   ++P        VGG+  +G+ G  IGP++ A+    W       K+  
Sbjct: 297 GKGTRMPDYVVLISTVGGISLIGINGFVIGPLIAAMFIAAWSLLAEEQKDQH 348


>gi|170702831|ref|ZP_02893681.1| protein of unknown function UPF0118 [Burkholderia ambifaria
           IOP40-10]
 gi|170132267|gb|EDT00745.1| protein of unknown function UPF0118 [Burkholderia ambifaria
           IOP40-10]
          Length = 356

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 91/326 (27%), Positives = 156/326 (47%), Gaps = 7/326 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSF--ISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+   F          T +A + T  V  L I+P+    
Sbjct: 35  WVIRDFIPAIAWACVIAIALWPLLKRFESERWFRNRPTLIATVITAGVSLLVILPVALAL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM-WASELWTKHLSHPQSLKILSETFL 141
              + +  +L   +     +GIP+P  ++ +P G    +E W  +L HP    + +   +
Sbjct: 95  GQAISQEHDLRMWLQSIQDNGIPLPDVIARLPYGATQVTEWWQANLGHP----LHAGAAM 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                +    F  +FG           FM++ LF   R G  +S  L       F     
Sbjct: 151 HGASGEKFIAFGRQFGTKLAHALFEFGFMLVTLFVILRAGHKLSGALLHGARRAFGPGGG 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           ++   +   +  T  G+ ++ +GEG +LG AY LAGVP    LG++TA+ AM+P  API 
Sbjct: 211 ELIERMVAAVYGTVTGLVVVGLGEGAILGVAYALAGVPHAALLGLVTAVAAMLPFCAPIV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G    A  + + G + +F+ +  +RP L+G   +LPFL   FG++GG  
Sbjct: 271 FCGAALWLFVQGATVWAVVVLVVGFVVVFVAEHFVRPVLIGSSTRLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIM 347
           T GL+GLF+GP LM ++ ++W E + 
Sbjct: 331 TFGLIGLFVGPALMTVLTMLWAEWVA 356


>gi|311693484|gb|ADP96357.1| protein belonging to uncharacterized protein family UPF0118 [marine
           bacterium HP15]
          Length = 371

 Score =  219 bits (558), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 78/351 (22%), Positives = 147/351 (41%), Gaps = 5/351 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
                +++ + L  ++ +K FF P+  A+ I     P+      K  +     A+I    
Sbjct: 8   RTFLALLVGVSLAFVFLMKPFFGPIFWAVAIALIFHPVQQLLERKLGDRPNVNALITLCI 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            M + ++P+L L    + E   L  ++       I    ++  +     A + +      
Sbjct: 68  CMFIVVIPVLVLVTSLVAEGVALYQQIQSGE---IRPGEYIDRVNQSFPAIQAFLAQFDI 124

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             +        +   G  F+ R A   G     + L +  M+   FF  RDG ++ + + 
Sbjct: 125 SFAELRDRAVSIFVGGSQFLGRQALGVGQNTFQFFLGLALMVYLAFFLLRDGRALVELMI 184

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                L     + +     +V R+T  G  +IAI +G + G  +W+ G+   +  GV+ A
Sbjct: 185 RALP-LGDERERLLFAKFAEVTRATVKGNLLIAIIQGALGGLIFWILGISGALLWGVVMA 243

Query: 250 IMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I++++P  GA + +   +IYL   G++  A  L  +G + + + D  LRP LVG   KLP
Sbjct: 244 IVSLLPAVGAALVWVPAAIYLAAVGDVVEAVVLTAFGVVVIGLADNLLRPVLVGRDTKLP 303

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                   +GG+   G+ G  +GP++ AL    W   I    E   + +++
Sbjct: 304 DYIVLLSTLGGIVMFGINGFVMGPLVAALFMAFWGIFIREFSEEAHRPAAS 354


>gi|259908241|ref|YP_002648597.1| hypothetical protein EpC_15860 [Erwinia pyrifoliae Ep1/96]
 gi|224963863|emb|CAX55365.1| Putative membrane protein [Erwinia pyrifoliae Ep1/96]
 gi|283478172|emb|CAY74088.1| putative AI-2E family transporter [Erwinia pyrifoliae DSM 12163]
          Length = 372

 Score =  219 bits (558), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 75/355 (21%), Positives = 144/355 (40%), Gaps = 6/355 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G   +++    L  L+ L  +F+ +L A I+     P+ S       + +   +++  +
Sbjct: 8   KGFFIFILAITTLGFLHILGPYFSAILWAAILAIIFHPLKSKIGKHCGDRNGLASMLTLL 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMWASELWTKHL 127
            +  +  +PL  +     +E   L +++         V    ++ +P   W      ++ 
Sbjct: 68  IICLIVFIPLAVVASSLAVEFNALYNRIQANQTELTTVASSVVNHLP--EWLRHFLAENN 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +      + +   G  F        G     + +    M+  LFF  +DG  +   
Sbjct: 126 LTDANAIQQKLSGVAMKGGQFFAGSLMMIGKSTFSFTIGFGIMLYLLFFLLKDGAYLVGM 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                  L       +      V R+T  G  ++A+ +G + G A+W AG+   +  G +
Sbjct: 186 ALD-AIPLSRFVKHHLFVKFAAVSRATVKGTVVVAVVQGTLGGIAFWCAGIQGSILWGSL 244

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A +++IP  G+ I +  V I+LL  G +     L  +  + + +VD  LRP LVG   K
Sbjct: 245 MAFLSLIPAVGSAIIWLPVVIWLLFSGAMVKGLALTFFFVVVIGLVDNILRPLLVGKDTK 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK-ESIMAIKENKEKISSNF 360
           +P        +GG+   G+ G  IGP++ AL    W   S    + N ++I S+F
Sbjct: 305 MPDYLILISTLGGMEIYGINGFVIGPLIAALFISCWNLLSGRDHRGNTDEIDSDF 359


>gi|153010748|ref|YP_001371962.1| hypothetical protein Oant_3427 [Ochrobactrum anthropi ATCC 49188]
 gi|151562636|gb|ABS16133.1| protein of unknown function UPF0118 [Ochrobactrum anthropi ATCC
           49188]
          Length = 355

 Score =  219 bits (558), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 77/351 (21%), Positives = 143/351 (40%), Gaps = 7/351 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     ++  + +   + L  +++ VL A+I+     P+               A+
Sbjct: 1   MSVQRASFYILLALVTIAFAWLLLPYYSAVLWAVILAVVFSPVQQRLERLLGGRKNIAAL 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW--ASEL 122
           ++ +  +CL I+P+L +F   + E   L  ++         +  ++S I G +     E 
Sbjct: 61  LSVLMCICLVIIPMLAIFGSLVQEGNSLYQRLSSRE---FDLNSYISRILGALPDSLEEW 117

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            T+      +      +     G          FG   L + +    M+  LFF +RDG 
Sbjct: 118 LTRFELGDFAEWRARISSAIMQGSQLFAGKLVSFGQNTLQFFIGFGIMLYLLFFLFRDGA 177

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + +++      L   Y ++       VIR+T  G  IIAI +G + G  +W  GV + +
Sbjct: 178 DLGRKIRQAIP-LNDDYTRQFLEKFIAVIRATVKGNIIIAIIQGTIGGVTFWSLGVEAAL 236

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             GV+   ++M+P  GA + +   + +    G   +   L   G   + +VD  LRP LV
Sbjct: 237 LWGVLMTFLSMLPAVGAALVWVPAAAWFFASGEWISGGILVFVGVFVIGLVDNLLRPPLV 296

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           G   ++P        VGG+  +G+ G  +GP++ A+    W       K N
Sbjct: 297 GKGTRMPDYVVLISTVGGISLIGINGFVVGPLIAAMFIAAWSLLAEEQKGN 347


>gi|115358452|ref|YP_775590.1| hypothetical protein Bamb_3702 [Burkholderia ambifaria AMMD]
 gi|115283740|gb|ABI89256.1| protein of unknown function UPF0118 [Burkholderia ambifaria AMMD]
          Length = 356

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 91/326 (27%), Positives = 156/326 (47%), Gaps = 7/326 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSF--ISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+              T +A + TV V  L I+P+    
Sbjct: 35  WVIRDFLPAIAWACVIAIALWPLLKRLESERWFRNRPTLIATVITVGVSLLVILPVALAL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-MWASELWTKHLSHPQSLKILSETFL 141
              + +  +L   +     +GIP+P  ++ +P G    +E W  +L HP    + +   +
Sbjct: 95  GQAIAQEHDLRMWLQSVQDNGIPLPDVIARLPYGAAQVTEWWQANLGHP----LHAGAAM 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                +    F  +FG           FM++ LF   R G  +S  L       F     
Sbjct: 151 HGASGEKFIAFGRQFGTKLAHALFEFGFMLVTLFVILRAGHKLSGALLHGARRAFGPGGG 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           ++   +   +  T  G+ ++ +GEG +LG AY LAGVP    LG++TA+ AM+P  API 
Sbjct: 211 ELIERMVAAVYGTVTGLVVVGLGEGAILGVAYALAGVPHAALLGLVTAVAAMLPFCAPIV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G    A  + + G + +F+ +  +RP L+G   +LPFL   FG++GG  
Sbjct: 271 FCGAALWLFVQGATVWAVVVLVVGFVVVFVAEHFVRPVLIGSSTRLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIM 347
           T GL+GLF+GP LM ++ ++W E + 
Sbjct: 331 TFGLIGLFVGPALMTVLTMLWAEWVA 356


>gi|254248847|ref|ZP_04942167.1| hypothetical protein BCPG_03698 [Burkholderia cenocepacia PC184]
 gi|124875348|gb|EAY65338.1| hypothetical protein BCPG_03698 [Burkholderia cenocepacia PC184]
          Length = 353

 Score =  218 bits (557), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 69/350 (19%), Positives = 143/350 (40%), Gaps = 5/350 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           ++  + Q    +++  + +   + L  F   V    I+     P+     ++  +     
Sbjct: 5   DSGQDHQKFFYFLLFAVTVGLCWILAPFSGAVFWGTILAILFQPVQRWLAARFGKRRNLA 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWASE 121
           A++    ++ + I+PL+F+    + E+  +  ++  A  +        +  +P  +    
Sbjct: 65  ALVTMSLIILIVILPLVFVTATLVQEIAYVYQELKDAQPNYSQYFHDIIHALPTSIQNLL 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 + P   K L++         F    A   G     + +S   M+  +FF  RDG
Sbjct: 125 QKYGLTNIPGIQKKLTDG--AAQISQFAATQALSIGQNTFQFVVSFGVMLYMVFFLLRDG 182

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I +++      L   +   +      V+R+T  G   +A+ +G + G  +W+ G+   
Sbjct: 183 GEIGRRVRRALP-LDEEHKNLLLAKFTTVVRATVKGNIAVALVQGALGGLIFWILGIEGV 241

Query: 242 VALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           V  G + A ++++P  GA + +   ++Y L+ G I+    L  +    + +VD  LRP L
Sbjct: 242 VLWGALMAFLSLLPAIGASLVWVPAALYFLMIGAIWKCVILVAFCVGVIGLVDNLLRPIL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           VG   K+P        +GG+   G+ G  IGP++ AL    W     + +
Sbjct: 302 VGKDTKMPDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIYARSEQ 351


>gi|254253542|ref|ZP_04946859.1| hypothetical protein BDAG_02809 [Burkholderia dolosa AUO158]
 gi|124898187|gb|EAY70030.1| hypothetical protein BDAG_02809 [Burkholderia dolosa AUO158]
          Length = 350

 Score =  218 bits (557), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 70/348 (20%), Positives = 142/348 (40%), Gaps = 5/348 (1%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + +    +++  + +   + L  F   V    I+     P+   F ++  +     A++ 
Sbjct: 6   DHEKFFYFLLFAVTVGLCWILAPFSGAVFWGTILAILFQPVQRWFAARFGKRRNVAALLT 65

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWASELWTK 125
              ++ + I+PL+F+    + E+  +  ++  A  +        +  +P  +        
Sbjct: 66  LTLIVLIVILPLVFVTATLVQEIAYVYQELKDAQPNYSKYFQDIIHALPTSIQHLLAKYG 125

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             + P   K L+E         F    A   G     + +S   M+  +FF  RDG  I 
Sbjct: 126 LTNIPGIQKKLTEG--AAQISQFAAAQALSIGQNTFQFIVSFGVMLYMVFFLLRDGGEIG 183

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +++      L   +   +      V+R+T  G   +A+ +G++ G  +W+ G+   V  G
Sbjct: 184 RRVRRALP-LDEEHKNLLLAKFTTVVRATVKGNIAVALVQGILGGLIFWILGIQGVVLWG 242

Query: 246 VITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            + A ++++P  GA + +   ++Y L  G I+    L  +    + +VD  LRP LVG  
Sbjct: 243 ALMAFLSLLPAIGASLVWVPAALYFLATGAIWKCVILVAFCVGVIGLVDNLLRPILVGKD 302

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            K+P        +GG+   G+ G  IGP++ AL    W     + +  
Sbjct: 303 TKMPDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIYARSEQSE 350


>gi|330994022|ref|ZP_08317952.1| UPF0118 inner membrane protein ydiK [Gluconacetobacter sp. SXCC-1]
 gi|329758968|gb|EGG75482.1| UPF0118 inner membrane protein ydiK [Gluconacetobacter sp. SXCC-1]
          Length = 399

 Score =  218 bits (557), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 106/350 (30%), Positives = 176/350 (50%), Gaps = 8/350 (2%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS--T 60
           ET    +     + +F +L++LY ++GF   ++   I    SWP+Y+    +    +   
Sbjct: 52  ETQRTQRVARALLALFFVLLALYTVRGFLPSLIWGCIFAIASWPLYARARQRWPSRAHQA 111

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW-A 119
            L V  T+++  +F+ PL         E + ++  +  A   GIPVP W+S +P G    
Sbjct: 112 MLPVAFTLAIALIFLGPLALFGLEAGREAEGVLRLLNDARHSGIPVPPWISRLPYGQQTI 171

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              W  HL  P  +       L +  I    +   + G   L   L  IF I+ LFF  +
Sbjct: 172 ETWWNDHLKDPADI----SALLGSMNIGQGMKVTQQLGSQVLHRGLLFIFAILTLFFLLK 227

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG ++ +Q  ++    F    ++I+  +   +  +  G+ ++ IGEG+++G AY +AG P
Sbjct: 228 DGDAVIRQSLNVSRRAFGKRGERIALQMIASVHGSVSGLVLVGIGEGMLMGLAYLVAGAP 287

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLI-KGNIFNATCLFLWGAIELFIVDKTLRP 298
                GVITAI AMIP  A I+  AV++ LL+  G +  A  + L+G   +F+ D  +RP
Sbjct: 288 HPFLFGVITAIAAMIPFCALIAIGAVALLLLVNTGAVLTAVAIVLFGLAVIFLADHLVRP 347

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            L+GG  +LPFL    G++GG  +  LLGLF+GP +MA++ ++W     A
Sbjct: 348 ALIGGTTQLPFLWVLMGILGGAESWSLLGLFVGPAIMAVLHMLWLNWSRA 397


>gi|271500197|ref|YP_003333222.1| hypothetical protein Dd586_1651 [Dickeya dadantii Ech586]
 gi|270343752|gb|ACZ76517.1| protein of unknown function UPF0118 [Dickeya dadantii Ech586]
          Length = 366

 Score =  218 bits (557), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 71/359 (19%), Positives = 137/359 (38%), Gaps = 11/359 (3%)

Query: 1   MRETMLNPQGIMRWM-----IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK 55
           MR++      + R +     I  +I+   + ++ F      A ++   +WP+        
Sbjct: 1   MRQSQSQRFDLARILFSLLFIGIMIIACFWVVQPFILGFAWASMVVIATWPLLIRLQQIL 60

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP- 114
               +   ++ T+ ++ LF+ P   L    +     L++ V    +   P   WL  IP 
Sbjct: 61  WGYRSLAVIVMTILLVLLFVFPTSILVSSVIDNASNLINWVSAQGRMTPPSLDWLQSIPL 120

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
            G      W           +            ++   A+  G   +   L ++F ++  
Sbjct: 121 VGAKLHSSWHALAHSGGPALMAKIQPYIGQTASWVVSQAAHVGRFLMHCALMVLFSVL-- 178

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
              Y  G  ++  +      L          +  + IR+  LG+ + AI + ++ G    
Sbjct: 179 --LYSKGDQVALGVRRFAIRLGGQGGDSAVILAAQAIRAVALGVVVTAIVQSVLGGIGLA 236

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           LAG+P    L V+  +  +   G         I+L   G+    T L +W    +  +D 
Sbjct: 237 LAGIPYTTLLTVLMFLSCVAQIGPLTVLVPAIIWLYWSGDTTWGTVLLVWSC-VVGTLDN 295

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            +RP L+     LP L    G++GG+   G++GLFIGPV++A+   +    + A  E +
Sbjct: 296 IIRPLLIRMGADLPMLLILSGVIGGLLAFGMIGLFIGPVVLAVSYRLLSAWMKASPEPQ 354


>gi|73542361|ref|YP_296881.1| hypothetical protein Reut_A2676 [Ralstonia eutropha JMP134]
 gi|72119774|gb|AAZ62037.1| Protein of unknown function UPF0118 [Ralstonia eutropha JMP134]
          Length = 388

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 78/352 (22%), Positives = 143/352 (40%), Gaps = 7/352 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M    L  +    + ++ +I  SL  L  F   +L   I+ F+SW  Y+          +
Sbjct: 1   MSSGQLIEKIAAVFALVVLIGGSLLVLAPFTTALLWGAILAFSSWYPYTVLARWLGNRRS 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMW 118
             A+I  V    + + P ++        + +L + V      GIP +P WLS +P  G +
Sbjct: 61  LAALICVVLAAVIVLGPFVYAGASFSAHIDQLSALVDRYIDQGIPQLPDWLSSLPYVGGY 120

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
               W + +     +       +   G   +       G       LSII      FFFY
Sbjct: 121 LQTSWERLIHADSEMVANVRKLIAPVGHALLGA-GLSVGAGLGQLALSIILA----FFFY 175

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
             G      L +    +       +  +    ++    G+   A  + ++ G   W+AGV
Sbjct: 176 TGGEYAIDWLRAGMRRIAGERADHLLALAGSTVKGVVYGVLGTAFIQAVLQGIGLWIAGV 235

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P+   LG +T  +++IP G P+ +   +++L   G    A  L +WG   + + D  ++P
Sbjct: 236 PAAAILGFVTFFLSVIPVGPPLVWLPAALWLYHGGETGWAIFLVVWGVAVVGMADNVVKP 295

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            L+     +P +    G++GG    G LG+FIGP L+A+   + ++  +  +
Sbjct: 296 LLISKGTGMPLIWIMMGVLGGALAFGFLGVFIGPTLLAVAYALLRDWTIGSQ 347


>gi|299533519|ref|ZP_07046896.1| hypothetical membrane protein [Comamonas testosteroni S44]
 gi|298718477|gb|EFI59457.1| hypothetical membrane protein [Comamonas testosteroni S44]
          Length = 359

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 72/333 (21%), Positives = 139/333 (41%), Gaps = 6/333 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L+ +   +   ++      P++   + +     T  A+   +  + + I+PL  +    
Sbjct: 2   VLEEYAVAIFWGVVFAIVFAPLHRKLLMRMPNKPTLAALATLLISLVMVILPLSLIGLSL 61

Query: 86  MLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
           + E   +  ++   N   G  V +  + +P   W +    K             + +   
Sbjct: 62  IKETAAIYDRISSGNLSAGSYVEQVFNALP--SWLTPWMEKLHLGTLEEIQTKLSNIALQ 119

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
                   A   G   L + +    M+  +FF  RDG  +  ++ +    L P + ++++
Sbjct: 120 ASKLAATKAVGLGQNTLGFVVGFGVMLYLIFFLLRDGKELVARIWA-ATPLAPEHKRELA 178

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
                VIR+T  G   +A  +G + G  +W+ G+   V   V+ A ++++P  GA + + 
Sbjct: 179 IKFITVIRATVKGNLAVAAAQGALGGLIFWILGIQGAVLWAVVMAFLSLLPAVGAGLVWG 238

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
            V+IY L  G +     L  +G + + +VD  LRP LVG   K+P        +GG+   
Sbjct: 239 PVAIYFLATGAVTKGLILAAYGVLVIGLVDNVLRPLLVGKDTKMPDYVVLISTLGGMALF 298

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           GL G  +GP + AL    W E    ++E +EK+
Sbjct: 299 GLSGFVLGPAIAALFMAAW-ELFATMQEQEEKL 330


>gi|261319296|ref|ZP_05958493.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261298519|gb|EEY02016.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
          Length = 354

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 76/352 (21%), Positives = 149/352 (42%), Gaps = 7/352 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     ++  + +   + L  ++  VL A+I+    +P+    +          A 
Sbjct: 3   MSVQRASFYILLTLVTIAFAWLLIPYYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAF 62

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW--ASEL 122
           ++ +  +CL I+P+L +F   + E   L  ++         +  +++ I   +     E 
Sbjct: 63  LSVLMCICLVIIPMLAIFGSLVDEGTSLYQRLSSRE---FDINGYIARIMAALPESLEEW 119

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             +      +      + +   G          FG   L + +    M+  LFF +RDG 
Sbjct: 120 LKRFELGTFADWRARISSVVMQGSQLFAARLVSFGQNTLQFFIGFGIMLYLLFFLFRDGA 179

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + +++      L   Y ++       VIR+T  G  IIAI +G+  G  +WL G+ + +
Sbjct: 180 DVGKKIRRAIP-LSDDYTRQFLEKFTAVIRATVKGNIIIAIIQGMNGGVTFWLLGIEAAL 238

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             GVI    +M+P  GA + +T  +++  + G+ ++   L + G + + +VD  LRP LV
Sbjct: 239 LWGVIMTFCSMLPAVGAALVWTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLV 298

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G   ++P        VGG+  +G+ G  IGP++ A+    W       K+  
Sbjct: 299 GKGTRMPDYVVLISTVGGISLIGINGFVIGPLIAAMFIAAWSLLAEEQKDQH 350


>gi|170736099|ref|YP_001777359.1| hypothetical protein Bcenmc03_3717 [Burkholderia cenocepacia MC0-3]
 gi|169818287|gb|ACA92869.1| protein of unknown function UPF0118 [Burkholderia cenocepacia
           MC0-3]
          Length = 350

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 68/350 (19%), Positives = 143/350 (40%), Gaps = 5/350 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           ++  + Q    +++  + +   + L  F   V    I+     P+     ++  +     
Sbjct: 2   DSGQDHQKFFYFLLFAVTVGLCWILAPFSGAVFWGTILAILFQPVQRWLAARFGKRRNLA 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWASE 121
           A++    ++ + I+PL+F+    + E+  +  ++  A  +        +  +P  +    
Sbjct: 62  ALVTMSLIILIVILPLVFVTATLVQEIAYVYQELKDAQPNYSQYFHDIIHALPTSIQNLL 121

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 + P   K L++         F    A   G     + +S   M+  +FF  RDG
Sbjct: 122 QKYGLTNIPGIQKKLTDG--AAQISQFAATQALSIGQNTFQFVVSFGVMLYMVFFLLRDG 179

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I +++      L   +   +      V+R+T  G   +A+ +G + G  +W+ G+   
Sbjct: 180 GEIGRRVRRALP-LDEEHKNLLLAKFTTVVRATVKGNIAVALVQGALGGLIFWILGIEGV 238

Query: 242 VALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           V  G + A ++++P  GA + +   ++Y L+ G ++    L  +    + +VD  LRP L
Sbjct: 239 VLWGALMAFLSLLPAIGASLVWVPAALYFLMIGAVWKCVILVAFCVGVIGLVDNLLRPIL 298

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           VG   K+P        +GG+   G+ G  IGP++ AL    W     + +
Sbjct: 299 VGKDTKMPDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIYARSEQ 348


>gi|296101461|ref|YP_003611607.1| hypothetical protein ECL_01097 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055920|gb|ADF60658.1| hypothetical protein ECL_01097 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 369

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 70/337 (20%), Positives = 144/337 (42%), Gaps = 5/337 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G   +++  +       L  +F+ +L A I+     P+ +   +   + +   +++   
Sbjct: 8   KGFFIFILALVTWAFFDVLSPYFSAILWAAILTVIFNPVKNKLRAALGDRNGLASLLTIG 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL-SDIPGGMWASELWTKHL 127
            +  +  +PL+ +F    +E+  + +K+   N     V   + + +P   WAS     H 
Sbjct: 68  IICLIVFIPLMVIFSSLAIELNVVYTKLQENNTQFPEVVASIFNHLP--DWASGFLADHN 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +      + +   G  ++   A   G     + +S   M+  LFF  +DG  + +Q
Sbjct: 126 LTNAAQIQKKLSDVALQGGQYLAGSAFLIGKGTFGFAISFGIMLYLLFFLLKDGPFLVRQ 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L     + +      V R+T  G  ++A+ +G + G A+ +AG+   +  G +
Sbjct: 186 ILD-SLPLSDFAKQHLFAKFVGVSRATVKGTAVVAVVQGTLGGIAFAIAGIDGSILWGAL 244

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A ++++P  G+ I +   +I+L     I+    +  +  I + +VD  LRP LVG   K
Sbjct: 245 MAFLSLVPAVGSAIVWVPAAIFLFATHQIWQGLFIVGFFVIIVGLVDNILRPLLVGKDTK 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +P        +GG+   G+ G  IGP++ AL    W 
Sbjct: 305 MPDYLILISTLGGMELYGINGFVIGPLIAALFIACWN 341


>gi|306845823|ref|ZP_07478391.1| transmembrane protein [Brucella sp. BO1]
 gi|306273715|gb|EFM55553.1| transmembrane protein [Brucella sp. BO1]
          Length = 352

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 77/352 (21%), Positives = 150/352 (42%), Gaps = 7/352 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     ++  + +   + L  ++  VL A+I+    +P+    +          A 
Sbjct: 1   MSVQRASFYILLTLVTIAFAWLLIPYYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAF 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW--ASEL 122
           ++ +  +CL I+P+L +F   + E   L  ++         +  +++ I   +     E 
Sbjct: 61  LSVLMCICLVIIPMLAIFGSLVDEGTSLYQRLSSRE---FDINSYIARIMAALPESLEEW 117

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             +      +      + +   G          FG   L + +    M+  LFF +RDG 
Sbjct: 118 LKRFELGTFADWRARISSVVMQGSQLFAARLVSFGQNTLQFFIGFGIMLYLLFFLFRDGA 177

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + +++      L   Y ++       VIR+T  G  IIAI +G++ G  +WL G+ + +
Sbjct: 178 DVGKKIRR-AIPLSDDYTRQFLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAAL 236

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             GVI    +M+P  GA + +T  +++  + G+ ++   L L G + + +VD  LRP LV
Sbjct: 237 LWGVIMTFCSMLPAVGAALVWTPAAVWFFVSGDWWSGAILVLVGVLVIGLVDNLLRPPLV 296

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G   ++P        VGG+  +G+ G  IGP++ A+    W       K+  
Sbjct: 297 GKGTRMPDYVVLISTVGGISLIGINGFVIGPLIAAMFIAAWSLLAEEQKDQH 348


>gi|163857030|ref|YP_001631328.1| hypothetical protein Bpet2718 [Bordetella petrii DSM 12804]
 gi|163260758|emb|CAP43060.1| putative membrane protein [Bordetella petrii]
          Length = 360

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 83/340 (24%), Positives = 142/340 (41%), Gaps = 5/340 (1%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           +   + L  F+  V    I+     P++    +K  +     A+   + V+ L IVP+  
Sbjct: 20  IAFGWVLWPFYGAVFWGAILAIIFAPVHRRIAAKLVKRRNLAALCTLLLVLLLVIVPVTL 79

Query: 81  LFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
           +    + E   L  +V   N   G+   + L  +P       L T+      +      T
Sbjct: 80  ITGSLVQEGANLYQRVKSGNLNFGVYFQQVLDALPAS--LHSLLTRFGMADITSLQDKLT 137

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
                G  ++   A   G     + +S   M+  LFF  RDG  +S +L +    L  + 
Sbjct: 138 AGAMRGSQYLATQAFNIGQDTFQFLISFGIMLYLLFFLLRDGSLLSARLRA-AIPLSDSR 196

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GA 258
              + R    VIR+T  G   +A  +G + G  +++ G+   V  GV+ A ++++P  GA
Sbjct: 197 KIHLLRKFTTVIRATVKGNIAVAAAQGALGGVIFYVLGIQGPVLWGVVMAFLSLLPAIGA 256

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            + +  V++Y L+ G  +    L L+G + + +VD  LRP LVG   KLP        +G
Sbjct: 257 GLIWVPVAVYFLVTGATWQGVALILYGVLVIGMVDNVLRPLLVGKDTKLPDYVVLISTLG 316

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           G+   GL G  IGP++ AL    W        E   +  +
Sbjct: 317 GMALFGLNGFVIGPLIAALFITCWDLFTSDFVEPAARDDT 356


>gi|227111729|ref|ZP_03825385.1| putative inner membrane protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 369

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 74/347 (21%), Positives = 138/347 (39%), Gaps = 6/347 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             I  +I+   + ++ F      A ++   +WP+   F +      +   ++ T+ ++ L
Sbjct: 20  VFITIMIIACFWVVQPFILGFAWACMVVIATWPLLIKFQALLWGRRSLAVLVMTLLLILL 79

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           FIVP+  L    +     L+S          P   WL+ IP  G      W   L    S
Sbjct: 80  FIVPIAVLVSSVVENSSALMSWGARQENFSPPTLEWLTSIPLVGEKLFNSWQALLQSGGS 139

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                          ++   A+  G   +   L +IF  +     Y  G ++++ +    
Sbjct: 140 GLFAKVQPYFGKTATWLVAQAAHVGRFLMHCSLMLIFSAL----LYYKGEAVAKAVRHFA 195

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + AI + ++ G    L+G+P    L V+  +  
Sbjct: 196 IRLGQERGDAAVILAAQSIRAVALGVVVTAIVQSVLGGIGLGLSGIPYTTLLTVLMFLCC 255

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +   G         I+L   G+    T L +W    +  +D  +RP L+     LP L  
Sbjct: 256 LAQLGPLPVLIPAIIWLYWTGDNTWGTILLVWSC-VVGTIDNVIRPVLIKMGADLPMLLI 314

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             G++GG+   G++G+FIGPV++A+   +    +  I E +  +S N
Sbjct: 315 LSGVIGGLLAFGMIGIFIGPVVLAVSYRLLFAWMREIPEPQNILSVN 361


>gi|283784810|ref|YP_003364675.1| putative outer membrane protein [Citrobacter rodentium ICC168]
 gi|282948264|emb|CBG87835.1| putative outer membrane protein [Citrobacter rodentium ICC168]
          Length = 370

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 72/356 (20%), Positives = 150/356 (42%), Gaps = 8/356 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G   ++++ +       L  +F+ +L A I+    +P+ +   +   + +   +++   
Sbjct: 8   KGFFLFLLVVVTWAFFDVLSPYFSAILWAAILTVIFYPVKNKLRTALGDRNGLASLLTLG 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM--WASELWTKH 126
            +  +  +PL  +      E+  +  K+     +    P  ++ +   M  WA E    H
Sbjct: 68  IICLIVFIPLALILSSLAFELNVVYVKL---QNNNAQFPEVIASLFAHMPDWAREFLADH 124

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                +      + +   G  ++   A   G     + +S   M+  LFF  +DG  + +
Sbjct: 125 NLDSAAEIQQKLSEVALKGGQYLAGSAFLIGKGTFGFAISFGVMLYLLFFLLKDGPFLVR 184

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           Q+      L     + +      V R+T  G  ++AI +G + G A+++AG+   +  G 
Sbjct: 185 QILD-SLPLSNFVKQHLFAKFAGVSRATVKGTVVVAIVQGTLGGIAFYIAGIEGSILWGA 243

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           + A +++IP  G+ I +   +I+L     ++    +  +  + + +VD  LRP LVG   
Sbjct: 244 LMAFLSLIPAVGSAIVWGPAAIFLFSTQQLWQGFFIVGFFVVVVGLVDNILRPILVGKDT 303

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE-SIMAIKENKEKISSNF 360
           K+P        +GG+   G+ G  IGP++ AL    W   S    + N E++   F
Sbjct: 304 KMPDYLILITTLGGMEIYGINGFVIGPLVAALFIACWNILSGRDHEGNAEELDKEF 359


>gi|330810817|ref|YP_004355279.1| hypothetical protein PSEBR_a3885 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378925|gb|AEA70275.1| Conserved hypothetical protein; putative membrane protein
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 353

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 81/352 (23%), Positives = 148/352 (42%), Gaps = 4/352 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M   ML  +  M  +++ + +  ++ L  F+  V  A+I+G    P+      K      
Sbjct: 1   MNRKMLQNKAQM-LLLVLVTIAFIWILLPFYGAVFWAVILGIVFAPMQRRLQLKFGWHRN 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             ++      +   I+P++ +    + E   L   +               D     +  
Sbjct: 60  VTSLFTLSICVVCAILPVIIISTLLVQEGAALYKSLESGELDIADYLARFKDALPPYFQH 119

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L    L +   L+          G +F    A  FG     + +S   MI  LFFF RD
Sbjct: 120 LLDRFGLGNLNGLRDKI-VKSAMQGSEFFATQAFSFGQGTFQFLVSFFVMIYLLFFFLRD 178

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  + +++ +    L     +++     +V+R+T  G  ++AI +G + G  +W+ G+P+
Sbjct: 179 GAELVRKVRTAVP-LAEHQKRRLQLKFNRVVRATVKGNLLVAISQGALGGLIFWILGIPT 237

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +   V+ A ++++P  GA + +  V++Y L+ G I+    L L+G   + +VD  LRP 
Sbjct: 238 VLPWAVLMAFLSLLPAVGAGLVWAPVAVYFLLSGAIWQGVVLTLFGVFVIGLVDNFLRPI 297

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           LVG   K+P        +GG+   GL G  IGP++ AL    W   +     
Sbjct: 298 LVGKDTKMPDYMVLVSTLGGLAVFGLNGFVIGPLIAALFMSSWALFVETTPR 349


>gi|330899208|gb|EGH30627.1| hypothetical protein PSYJA_17246 [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 319

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 74/306 (24%), Positives = 138/306 (45%), Gaps = 7/306 (2%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             L+ +  F++ ++   ++ F SWP+        +   +  A++  +  M L   PL++L
Sbjct: 19  ACLWVMAPFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAALVMCLCWMLLVAAPLVWL 78

Query: 82  FYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSET 139
            +     +++    +      G+P  P+WL+ IP  G     LWT       +     + 
Sbjct: 79  GFNLADHVRDATGLIKDIQVDGLPDPPQWLAGIPLVGERLVALWTTIDQQGAAFMATLKP 138

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            L   G   + R A + G   L+  LSI+F     FFFYRDG  ++  + SL E L    
Sbjct: 139 HLGQVGNWILARSA-QIGSGILELTLSIVFA----FFFYRDGPRLAAFVLSLLERLIGER 193

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            +    +V   ++    G+   A  + ++    + +AG+P  + LG++T + ++IP G P
Sbjct: 194 AQYYLDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALVLGILTFLFSLIPMGPP 253

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +   + +L+ +G    A  L +WG   +  VD  L+P+L+     LP +    G+ GG
Sbjct: 254 LVWLPATAWLVWQGEYGMAIFLGIWGMFIISGVDNVLKPYLISRGGNLPLVIVLLGVFGG 313

Query: 320 VRTMGL 325
           +   G 
Sbjct: 314 LLAFGF 319


>gi|317047887|ref|YP_004115535.1| hypothetical protein Pat9b_1663 [Pantoea sp. At-9b]
 gi|316949504|gb|ADU68979.1| protein of unknown function UPF0118 [Pantoea sp. At-9b]
          Length = 370

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 72/350 (20%), Positives = 141/350 (40%), Gaps = 10/350 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
            I+ +I+  L+ ++ F      A ++   +WP+            +   V  T+ ++ LF
Sbjct: 19  FILIMIVACLWVVQPFILGFAWASMVVIATWPLMIKLQRLLWGRRSLAVVAMTILLLLLF 78

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
           I+P+  L    +     +++         +P   WL ++P  G      + K +    S 
Sbjct: 79  IIPIAVLVNSLIDNSAPVIAWATQG-HLAVPQLDWLKEVPMVGDKLFSSYHKLVDGGGSA 137

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            +            F    A  FG   L   L ++F ++     Y  G  + Q +     
Sbjct: 138 IMSKLQPYIGRTTGFFVAQAGHFGRFMLHLALMLLFSVL----LYWRGEQVGQGIRHFAY 193

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            +          +  + IR+  LG+ + A+ +G++ G    ++G+P    L V+  +  +
Sbjct: 194 RMGGRRGDAAVLLAGQAIRAVALGVVVTALVQGVLGGIGLAISGIPYATLLTVVMILSCL 253

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +  G  I      I+L   G+    T L +W    +  +D  LRP L+     LP +   
Sbjct: 254 VQLGPLIVLVPAIIWLYWSGDTTWGTVLLIWSC-VVGTLDNVLRPMLIRMGADLPMILIL 312

Query: 314 FGLVGGVRTMGLLGLFIGPVLMAL---IAVIWKESIMAIKENKEKISSNF 360
            G++GG+   G++GLFIGPV++A+   +  +W     A  ++ E +    
Sbjct: 313 SGVIGGLVAFGMIGLFIGPVVLAVSYRLVSVWMHEAPAPDDDPETVVEEL 362


>gi|93005128|ref|YP_579565.1| hypothetical protein Pcryo_0297 [Psychrobacter cryohalolentis K5]
 gi|92392806|gb|ABE74081.1| protein of unknown function UPF0118 [Psychrobacter cryohalolentis
           K5]
          Length = 379

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 92/347 (26%), Positives = 173/347 (49%), Gaps = 7/347 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + +   +++ + ++    ++ F  P L A I+ + ++PIY+ F  +   SS F A I T
Sbjct: 12  QRLLAITLLVVLFVLCFQVVQFFIVPALWAAILAYVTFPIYNFFHQRVRFSSNFSAAIMT 71

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPG-GMWASELWTK 125
           VS+  +  VPL+   +    E   L+S +V   + G + VP  + D+P  G    ++  +
Sbjct: 72  VSITLMIGVPLVAGIFILQQEALSLISNLVYRIKVGYLDVPDSVKDLPIIGQQVKDVLWR 131

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
              +P+        +++++       +      +       +   ++ LFFFYRDG S+ 
Sbjct: 132 INKNPEGTLEAFRLWVQSHLY-----YGKIAFDVVFSSLAKLGMALMTLFFFYRDGTSLV 186

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +Q+     ++           V    R+   G+ + A+ + L+ G  Y+ A  PS + + 
Sbjct: 187 RQIRQALRNIIGNRIDGYIDSVGTTTRAVVYGIGLTALAQALLAGIGYYFASAPSPILMT 246

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++T I+A+IP G P  +  VS++LL +G+      L LWG + +  VD  +RP ++ G  
Sbjct: 247 IVTFIIALIPFGTPFVWGGVSLWLLSQGHTVEGIGLALWGILVISWVDNLIRPIVISGAT 306

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           K+PF+  F G++GG+   G +GLFIGPV++A+   +W+E I   K +
Sbjct: 307 KIPFIIIFIGVLGGLTAFGFVGLFIGPVVLAIGLAVWREWISQHKND 353


>gi|170721039|ref|YP_001748727.1| hypothetical protein PputW619_1855 [Pseudomonas putida W619]
 gi|169759042|gb|ACA72358.1| protein of unknown function UPF0118 [Pseudomonas putida W619]
          Length = 354

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 74/343 (21%), Positives = 151/343 (44%), Gaps = 4/343 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M +T L  + +   ++  + +   + L  ++  +  A+I+G    P+  + + +      
Sbjct: 1   MNQTALQNKALA-VLLALVTIAFGWILLPYYGAIFWAVILGILFAPLQRNLLMRFGRRRN 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A    +  + + I+P++      + E   L  ++               ++       
Sbjct: 60  LAAATTLLICLLVAILPVIITSALLVQEGATLYQRIESGQLDIAGYVERGMNMLPPFMQH 119

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L +  + + + L+     +  T G   +   A  FG    ++ +S   M+  LFFF R+
Sbjct: 120 SLDSMGMGNLEGLRDKITKW-ATQGSQILATQAFSFGQGTFEFLISFGIMLYLLFFFLRE 178

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +++++  L   L     +++     +V+R+T  G  ++AI +G + G  +W+  +PS
Sbjct: 179 GADVARRV-RLAVPLPEHQKRRLQLKFNRVVRATVKGNVLVAITQGALGGFIFWVLDIPS 237

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +   V+ A ++++P  GA I +  V+ Y L+ G I     L  +G + + +VD  LRP 
Sbjct: 238 ALVWAVMMAFLSLLPAVGAGIIWAPVAAYFLLTGAILQGVILTAFGVLVIGLVDNLLRPI 297

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           LVG   ++P        +GG+   GL G  IGP++ AL    W
Sbjct: 298 LVGKDTRMPDYLILVSTLGGLAVFGLNGFVIGPLIAALFMSSW 340


>gi|206578196|ref|YP_002237378.1| hypothetical protein KPK_1525 [Klebsiella pneumoniae 342]
 gi|206567254|gb|ACI09030.1| putative membrane protein [Klebsiella pneumoniae 342]
          Length = 369

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 74/337 (21%), Positives = 140/337 (41%), Gaps = 5/337 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G    ++  + L     L  +++ +L A I+     P+ +   ++  E +   A++  V
Sbjct: 8   KGFFILIVFIVTLAFFDVLSPYYSAILWAAILAVIFNPVKNKIRTRLGERNGLAALLTIV 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHL 127
            +  +   PL  +      E+  + SK+   + Q    V   ++ +P   WA     +H 
Sbjct: 68  IICLIVFTPLAIILSSLAYELNVVYSKLQHNDTQFPTVVASLIAHLP--DWARGFLAEHN 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                      + +      ++   A   G     + +S   M+  LFF  +DG  +   
Sbjct: 126 LDSAQQIQQQLSDVALKSGQYLAGSAFLIGKGTFGFTVSFGIMLYLLFFLLKDGPYLV-L 184

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L      L     + +      V R+T  G   +A+ +G + G A+W+AG+   +  G +
Sbjct: 185 LTLESLPLSSYVKQHLFAKFAAVARATVKGTVAVALAQGALGGFAFWVAGLDGSILWGAL 244

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A +++IP  G+ I +   +IYL   G ++    +  +  I + +VD  LRP LVG   K
Sbjct: 245 MAFLSLIPAVGSAIIWVPAAIYLFATGQLWQGAFIVGFFVIVIGLVDNILRPLLVGKDTK 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +P        +GG+   G+ G  IGP++ AL    W 
Sbjct: 305 MPDYLILIATLGGMEIYGINGFVIGPLIAALFIACWN 341


>gi|116691904|ref|YP_837437.1| hypothetical protein Bcen2424_3807 [Burkholderia cenocepacia
           HI2424]
 gi|116649904|gb|ABK10544.1| protein of unknown function UPF0118 [Burkholderia cenocepacia
           HI2424]
          Length = 353

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 68/350 (19%), Positives = 143/350 (40%), Gaps = 5/350 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           ++  + Q    +++  + +   + L  F   V    I+     P+     ++  +     
Sbjct: 5   DSGQDHQKFFYFLLFAVTVGLCWILAPFSGAVFWGTILAILFQPVQRWLAARFGKRRNLA 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWASE 121
           A++    ++ + I+PL+F+    + E+  +  ++  A  +        +  +P  +    
Sbjct: 65  ALVTMSLIILIVILPLVFVTATLVQEIAYVYQELKDAQPNYSQYFHDIIHALPTSIQNLL 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 + P   K L++         F    A   G     + +S   M+  +FF  RDG
Sbjct: 125 QKYGLTNIPGIQKKLTDG--AAQISQFAATQALSIGQNTFQFVVSFGVMLYMVFFLLRDG 182

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I +++      L   +   +      V+R+T  G   +A+ +G + G  +W+ G+   
Sbjct: 183 GEIGRRVRRALP-LDEEHKNLLLAKFTTVVRATVKGNIAVALVQGALGGLIFWILGIEGV 241

Query: 242 VALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           V  G + A ++++P  GA + +   ++Y L+ G ++    L  +    + +VD  LRP L
Sbjct: 242 VLWGALMAFLSLLPAIGASLVWVPAALYFLMIGAVWKCVILVAFCVGVIGLVDNLLRPIL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           VG   K+P        +GG+   G+ G  IGP++ AL    W     + +
Sbjct: 302 VGKDTKMPDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIYARSEQ 351


>gi|170701167|ref|ZP_02892139.1| protein of unknown function UPF0118 [Burkholderia ambifaria
           IOP40-10]
 gi|171317430|ref|ZP_02906622.1| protein of unknown function UPF0118 [Burkholderia ambifaria MEX-5]
 gi|170133910|gb|EDT02266.1| protein of unknown function UPF0118 [Burkholderia ambifaria
           IOP40-10]
 gi|171097385|gb|EDT42228.1| protein of unknown function UPF0118 [Burkholderia ambifaria MEX-5]
          Length = 350

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 138/346 (39%), Gaps = 5/346 (1%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + Q    +++  + +   + L  F   V    I+     P+     ++  +     A+++
Sbjct: 6   DHQKFFYFLLFAVTVGLCWILAPFSGAVFWGTILAILFQPVQRWLAARFGKRRNLAALVS 65

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWASELWTK 125
              ++ + I+PL+F+    + E+  +  ++  A  +        +  +P       L  K
Sbjct: 66  MSLIILIVILPLVFVTATLVQEIAYVYQELKDAQPNYSRYFHDIIHALP--TSIQNLLQK 123

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +            T        F    A   G     + +S   M+  +FF  RDG  I 
Sbjct: 124 YGLSNIPGIQKKLTDGAAQISQFAATQALSIGQNTFQFVVSFGVMLYMVFFLLRDGGEIG 183

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +++      L   +   +      V+R+T  G   +A+ +G + G  +W+ G+   V  G
Sbjct: 184 RRVRR-SIPLDEEHKNLLLAKFTTVVRATVKGNIAVALVQGALGGLIFWILGIEGVVLWG 242

Query: 246 VITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            + A ++++P  GA + +   ++Y L  G I+    L  +    + +VD  LRP LVG  
Sbjct: 243 ALMAFLSLLPAIGASLVWIPAALYFLAIGAIWKCVILVAFCVGVIGLVDNLLRPILVGKD 302

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            K+P        +GG+   G+ G  IGP++ AL    W     + +
Sbjct: 303 TKMPDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIYARSEQ 348


>gi|283833290|ref|ZP_06353031.1| putative membrane protein [Citrobacter youngae ATCC 29220]
 gi|291070927|gb|EFE09036.1| putative membrane protein [Citrobacter youngae ATCC 29220]
          Length = 369

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 70/348 (20%), Positives = 144/348 (41%), Gaps = 7/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G   +++  +       L  +F+ +L A I+     P+ +   S   E +   ++I   
Sbjct: 8   KGFFIFILAVVTWAFFDVLSPYFSAILWAAILTTIFNPVKNRLRSALGERNGLASLITIA 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM--WASELWTKH 126
            +  +  +PL+ +     +E+  + +K+    Q+    P  ++ I   +  WA     +H
Sbjct: 68  IICLIVFIPLMVILSSLAIELNVVYTKL---QQNDTQFPEVVTSILSYLPGWARGFLAEH 124

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                +      + +   G  ++   A   G     + +S   M+  LFF  +DG  + +
Sbjct: 125 NLDNAAEIQKKLSNIALQGGQYLAGSAFLIGKGTFGFAISFGIMLYLLFFLLKDGPYLVR 184

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           Q+      L     + +      V R+T  G  ++A+ +G++ G A+ +  +   V  G 
Sbjct: 185 QILD-SLPLSDFAKQHLFAKFVGVTRATVKGTAVVALVQGILGGIAFAIVDIDGSVLWGA 243

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           + A ++++P  G+ I +   +I+L     ++    +  +  I + +VD  LRP LVG   
Sbjct: 244 LMAFLSLVPAVGSAIVWVPAAIFLFATHQLWQGLFIVGFFVIIVGLVDNILRPLLVGKDT 303

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           K+P        +GG+   G+ G  IGP++ AL    W        E  
Sbjct: 304 KMPDYLILITTLGGMEIYGINGFVIGPLIAALFITCWNLFSGRDHEGN 351


>gi|156934268|ref|YP_001438184.1| putative inner membrane protein [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156532522|gb|ABU77348.1| hypothetical protein ESA_02098 [Cronobacter sakazakii ATCC BAA-894]
          Length = 375

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 72/361 (19%), Positives = 152/361 (42%), Gaps = 10/361 (2%)

Query: 1   MRETMLNPQGIMRWMIM-FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           +R+ M  PQ ++  + +  +I+  L+ ++ F      A  +   +WP+            
Sbjct: 7   LRQPMDVPQILLSVLFLSVMIIACLWIVQPFILGFAWAGTVVIATWPLLLRLQKMLWGRR 66

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
           +   ++  + ++ LF++P+  L    +      +  +  + +  IP   WL+ IP     
Sbjct: 67  SLAVLVMVLILIMLFVIPVALLVNSLVDSSGPFIHWL-TSGKMTIPDLAWLNSIPYIGNK 125

Query: 120 SELWTKHL--SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
             L   +L  S   ++      +L T    FI + A+  G + +   L ++F  +     
Sbjct: 126 LYLGWHNLVESGGSAIMAKVRPYLGTTTGWFIGQ-AAHLGRLLMHCGLMLLFSAL----L 180

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
           Y  G  ++  +      L          +  + IR+  LG+ + A+ +G++ G    ++G
Sbjct: 181 YWRGEQVAYGIRHFAIRLASKRGDAAVLLAGQAIRAVALGVVVTALVQGVLGGIGLAISG 240

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           +P    L V+  +  ++  G         I+L   G+    T L +W A  +  +D  +R
Sbjct: 241 IPYATLLTVVMILSCLVQLGPLPVLVPAIIWLYWSGDATWGTVLLIWSA-VVGTLDNIIR 299

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           P L+     LP +    G++GG+   G++GLFIGPVL+A+   ++   +      ++   
Sbjct: 300 PMLIRMGADLPMVLILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFSVWVREAPLPEDDSE 359

Query: 358 S 358
           +
Sbjct: 360 T 360


>gi|134292899|ref|YP_001116635.1| hypothetical protein Bcep1808_4190 [Burkholderia vietnamiensis G4]
 gi|134136056|gb|ABO57170.1| protein of unknown function UPF0118 [Burkholderia vietnamiensis G4]
          Length = 350

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 70/346 (20%), Positives = 138/346 (39%), Gaps = 5/346 (1%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + Q    +++  + +   + L  F   V    I+     P+     ++  +     A++ 
Sbjct: 6   DHQKFFYFLLFAVTVGLCWILAPFSGAVFWGTILAILFQPVQRWLAARFGKRRNLAALLT 65

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWASELWTK 125
              ++ + I+PL+F+    + E+  +  ++  A  +    V   +  +P       L  K
Sbjct: 66  LSLIILIVILPLVFVAGTLVQEIAYVYQELKDAPPNYSKYVHDIIQALP--TSIQHLLQK 123

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +            T        F    A   G     + +S   M+  +FF  RDG  I 
Sbjct: 124 YGLTNVPGIQKKLTDGAAQISQFAATQALSIGQNTFQFVVSFGVMLYMVFFLLRDGGEIG 183

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +++      L   +   +      V+R+T  G   +A+ +G + G  +W+ G+   V  G
Sbjct: 184 RRVRRALP-LDEEHKNLLLAKFTTVVRATVKGNIAVALVQGALGGLIFWILGIEGVVLWG 242

Query: 246 VITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            + A ++++P  GA + +   ++Y L  G ++    L  +    + +VD  LRP LVG  
Sbjct: 243 ALMAFLSLLPAIGASLVWVPAALYFLATGAVWKCVILVGFCVGVIGLVDNLLRPILVGKD 302

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            K+P        +GG+   G+ G  IGP++ AL    W     A +
Sbjct: 303 TKMPDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIYARAEQ 348


>gi|296116563|ref|ZP_06835173.1| hypothetical protein GXY_12188 [Gluconacetobacter hansenii ATCC
           23769]
 gi|295976775|gb|EFG83543.1| hypothetical protein GXY_12188 [Gluconacetobacter hansenii ATCC
           23769]
          Length = 379

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 102/349 (29%), Positives = 171/349 (48%), Gaps = 7/349 (2%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE--SS 59
           RET    +     + +F ++++LY ++GF   ++   I    SWP+Y    ++       
Sbjct: 32  RETQRAQRVARGLLALFFVVMALYTVRGFLPSLIWGGIFAIASWPLYVRARTRWHAATHQ 91

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW- 118
             L    T+ +  +F+VP+         + + ++  +  A Q G+PVP+W+  +P G   
Sbjct: 92  LLLPAAFTLGIALIFLVPVTLFGLEAARDAEGVLHLLNNARQSGMPVPQWIDHLPIGAQG 151

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
               W  HL  P          L +  I    +   + G       +  IF I+ LFF  
Sbjct: 152 LRAWWESHLQDPDDF----SALLGSLRIGQSVKMTQQVGTQLAHRGILFIFSILTLFFLL 207

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +DG ++ +Q   +    F    ++I+  +   I  T  G+ ++ +GEG+V+G AY +AG 
Sbjct: 208 KDGDAVIRQCLVVSRRAFGKRGERIALQIIASIHGTVAGLVLVGMGEGVVMGLAYLIAGA 267

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P     GV+TA+ AMIP  A I+   VS  LLIKG+   A  + L G   +F+ D  +RP
Sbjct: 268 PHAFLFGVVTAVAAMIPFCAMIAIGIVSTLLLIKGSAVIAIVIMLVGLAVIFLADHLVRP 327

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            L+GG  +LPFL    G++GG  +  LLGLF+GP +MA++ ++W+    
Sbjct: 328 ALIGGSTQLPFLWVLTGILGGAESWNLLGLFVGPAIMAVLHMLWRNWTR 376


>gi|227327021|ref|ZP_03831045.1| putative inner membrane protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 369

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 74/347 (21%), Positives = 138/347 (39%), Gaps = 6/347 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             I  +I+   + ++ F      A ++   +WP+   F +      +   ++ T+ ++ L
Sbjct: 20  VFITIMIIACFWVVQPFILGFAWACMVVIATWPMLIKFQALLWGRRSLAVLVMTLLLILL 79

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           FIVP+  L    +     L+S          P   WL+ IP  G      W   L    S
Sbjct: 80  FIVPIAVLVSSVVDNSSALMSWGARQENFSPPTLEWLTSIPLVGEKLFNSWQALLQSGGS 139

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                          ++   A+  G   +   L +IF  +     Y  G ++++ +    
Sbjct: 140 GLFAKVQPYFGKTATWLVAQAAHVGRFLMHCSLMLIFSAL----LYYKGEAVAKAVRHFA 195

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + AI + ++ G    L+G+P    L V+  +  
Sbjct: 196 IRLGQERGDAAVILAAQSIRAVALGVVVTAIVQSVLGGIGLGLSGIPYTTLLTVLMFLCC 255

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +   G         I+L   G+    T L +W    +  +D  +RP L+     LP L  
Sbjct: 256 LAQLGPLPVLIPAIIWLYWTGDTTWGTILLVWSCF-VGTIDNIIRPVLIRMGADLPMLLI 314

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             G++GG+   G++G+FIGPV++A+   +    +  I E +  +S N
Sbjct: 315 LSGVIGGLLAFGMIGIFIGPVVLAVSYRLLFAWMREIPEPQNILSVN 361


>gi|126443267|ref|YP_001062066.1| hypothetical protein BURPS668_A1067 [Burkholderia pseudomallei 668]
 gi|126222758|gb|ABN86263.1| putative membrane protein [Burkholderia pseudomallei 668]
          Length = 356

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 95/325 (29%), Positives = 161/325 (49%), Gaps = 7/325 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSF--ISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A ++    WP       +      +T +A + T +V  L +VP+    
Sbjct: 35  WVIRDFMPAIAWACVVAIALWPALRRIDALPALRGRATLVAALLTSAVALLVVVPIAAGL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-MWASELWTKHLSHPQSLKILSETFL 141
              + +  EL+  +    Q GIP P  LS +P G   AS  W  +L+ P    +   T +
Sbjct: 95  VEAVDQSHELLGWLHRVEQTGIPEPDVLSHLPFGSQQASTWWQANLAKP----LHPATAV 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
           K      +  F   FG       +   FM++ LF  ++ G  +S  L +     F     
Sbjct: 151 KGVDGASVVTFGRHFGSRLAHAAVLFGFMLVTLFVIFQAGPRLSGSLLTGVRRAFGDSGA 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            + + +   +  T  G+ ++  GEG++LG AY  AG+P    LG++TAI AM+P  AP+ 
Sbjct: 211 ALLQRMAAAVYGTVTGLVVVGFGEGVLLGLAYAFAGLPHAALLGLVTAIAAMLPFCAPLV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G +  A  L  +G++ +F+ +  +RP L+G   +LPFL   FG++GG  
Sbjct: 271 FGGAALWLFVQGALGWAIGLAAFGSVVVFVAEHFVRPVLIGNSARLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKESI 346
           T GLLGLF+GP LM ++ V+W E +
Sbjct: 331 TFGLLGLFVGPALMTVLTVLWAEWV 355


>gi|322832729|ref|YP_004212756.1| hypothetical protein Rahaq_2014 [Rahnella sp. Y9602]
 gi|321167930|gb|ADW73629.1| protein of unknown function UPF0118 [Rahnella sp. Y9602]
          Length = 369

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 75/356 (21%), Positives = 151/356 (42%), Gaps = 8/356 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G    ++  + L     L+ +++ VL A+I+     P+ +       + +  ++++  +
Sbjct: 8   KGFFIAILFIVTLAFFDVLRPYYSSVLWAIILAVIFNPLKNRLKQVVGDRNGVVSLLTVL 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV--PRWLSDIPGGMWASELWTKH 126
            +  +   PL  +     LE   + +K+   NQ  +PV    ++  +P   WA    + H
Sbjct: 68  IICLIVFTPLAIITSSLALEFNAVYTKLQ-GNQTQLPVILADFIHHLP--RWARHFLSDH 124

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                +      + +   G  ++       G     + +    M+  LFF  +DG  +  
Sbjct: 125 DLDSTAEIQKKLSDVALQGSQYLAGSVFVIGKSTFGFVVGFGIMLYILFFLIKDGAYLVN 184

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L      L       +      V R+T  G  ++A+ +G + G A+++AG+   +  G 
Sbjct: 185 -LTLATLPLSRYVKHHLFMKFAAVSRATVKGTVVVAVVQGALGGIAFYIAGLDGSLLWGA 243

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           + A +++IP  G+ I +   +IY    G ++    +  +  + + IVD  LRP LVG   
Sbjct: 244 LMAFLSIIPAVGSAIIWVPAAIYFFASGMLWQGIFIVAFFVVVIGIVDNVLRPLLVGKDT 303

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE-SIMAIKENKEKISSNF 360
           K+P        +GG+   G+ G  IGP++ AL    W   S    + N ++I+ +F
Sbjct: 304 KMPDYLILVTTLGGMEVYGINGFVIGPLIAALFIACWNILSGRDHQNNTDEINEDF 359


>gi|206562699|ref|YP_002233462.1| hypothetical protein BCAM0842 [Burkholderia cenocepacia J2315]
 gi|198038739|emb|CAR54700.1| putative membrane protein [Burkholderia cenocepacia J2315]
          Length = 350

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 141/346 (40%), Gaps = 5/346 (1%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + Q    +++  + +   + L  F   V    I+     P+     ++  +     A++ 
Sbjct: 6   DHQKFFYFLLFAVTVGLCWILAPFSGAVFWGTILAILFQPVQRWLAARFGKRRNLAALVT 65

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWASELWTK 125
              ++ + I+PL+F+    + E+  +  ++  A  +        +  +P  +        
Sbjct: 66  MSLIILIVILPLVFVTATLVQEIAYVYQELKDAQPNYSQYFHDIIHALPTSIQNLLQKYG 125

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             + P   K L++         F    A   G     + +S   M+  +FF  RDG  I 
Sbjct: 126 LTNIPGIQKKLTDG--AAQISQFAAAQALSIGQNTFQFVVSFGVMLYMVFFLLRDGGEIG 183

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +++      L   +   +      V+R+T  G   +A+ +G + G  +W+ G+   V  G
Sbjct: 184 RRVRRALP-LDEEHKNLLLAKFTTVVRATVKGNIAVALVQGALGGLIFWILGIEGVVLWG 242

Query: 246 VITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            + A ++++P  GA + +   ++Y L+ G ++    L  +    + +VD  LRP LVG  
Sbjct: 243 ALMAFLSLLPAIGASLVWVPAALYFLMIGAVWKCVILVAFCVGVIGLVDNLLRPILVGKD 302

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            K+P        +GG+   G+ G  IGP++ AL    W     + +
Sbjct: 303 TKMPDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIYARSEQ 348


>gi|217969998|ref|YP_002355232.1| hypothetical protein Tmz1t_1578 [Thauera sp. MZ1T]
 gi|217507325|gb|ACK54336.1| protein of unknown function UPF0118 [Thauera sp. MZ1T]
          Length = 373

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 93/330 (28%), Positives = 163/330 (49%), Gaps = 7/330 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           S   L  F  PV  A+II + +W  Y    S+     T  A++ T+ +   F++P L++ 
Sbjct: 26  SYAVLHLFIVPVAWAVIIAYATWTPYRQLRSRLPRYPTISALLMTLLLSAAFVLPALWIG 85

Query: 83  YYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPG-GMWASELWTKHLSHPQSLKILSETF 140
                E+   ++ V    + G   +P ++  +P  G     +  +    P++L+     +
Sbjct: 86  MLLRTEVGVAIAAVTAQIREGAFVLPEFVRTLPWIGDDLQAMVGELTREPEALRAQLTEW 145

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           ++  G D         G         + F +I +FF YRDG  + +Q+ ++         
Sbjct: 146 VR-QGSDLALTLIGDVGRN----AAKLGFALITVFFLYRDGERVLEQVVAVLRRFLGERL 200

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
                 V  + ++   G+   AIG+G V G  YW AGVP+ V +G ITA++AMIP G P 
Sbjct: 201 DPYLSAVGGMTKAVVWGLIATAIGQGFVAGLGYWWAGVPAPVLMGAITAVIAMIPFGTPF 260

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
           ++ ++  +LL+ GN      L LWGA+ +  VD  +RP ++    ++PFL   FG++GG+
Sbjct: 261 AWGSIGAWLLLTGNTVEGIGLLLWGALVVSWVDNLVRPLVISNATRIPFLLVMFGVLGGL 320

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
              GL+GLF+GPV++A++  +W E +   +
Sbjct: 321 SAFGLVGLFLGPVVLAVLMAVWGEWLEESE 350


>gi|167897573|ref|ZP_02484975.1| hypothetical protein Bpse7_27792 [Burkholderia pseudomallei 7894]
 gi|167922146|ref|ZP_02509237.1| hypothetical protein BpseBC_26558 [Burkholderia pseudomallei
           BCC215]
          Length = 356

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 95/325 (29%), Positives = 160/325 (49%), Gaps = 7/325 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSF--ISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A ++    WP       +      +T +A + T +V  L +VP+    
Sbjct: 35  WVIRDFMPAIAWACVVAIALWPALRRIDALPALRGRATLVAALLTSAVALLVVVPIAAGL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-MWASELWTKHLSHPQSLKILSETFL 141
              + +  EL+  +    Q GIP P  LS +P G   AS  W  +L+ P    +   T +
Sbjct: 95  VEAVDQSHELLGWLHRVEQTGIPEPDVLSHLPFGSQQASTWWQANLAKP----LHPATAV 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
           K      +  F   FG       +   FM++ LF  ++ G  +S  L +     F     
Sbjct: 151 KGVDGASVVTFGRHFGSRLAHAAVLFGFMLVTLFVIFQAGPRLSGSLLTGVRRAFGDSGA 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            + + +   +  T  G+ ++  GEG++LG AY  AG+P    LG++TAI AM+P  AP+ 
Sbjct: 211 ALLQRMAAAVYGTVTGLVVVGFGEGVLLGLAYAFAGLPHAALLGLVTAIAAMLPFCAPLV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G +  A  L  +G++ +F  +  +RP L+G   +LPFL   FG++GG  
Sbjct: 271 FGGAALWLFVQGALGWAIGLAAFGSVVVFAAEHFVRPVLIGNSARLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKESI 346
           T GLLGLF+GP LM ++ V+W E +
Sbjct: 331 TFGLLGLFVGPALMTVLTVLWAEWV 355


>gi|325528611|gb|EGD05706.1| hypothetical protein B1M_05106 [Burkholderia sp. TJI49]
          Length = 350

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 137/346 (39%), Gaps = 5/346 (1%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + Q    +++  + +     L  F   V    I+     P+     ++  +     A++ 
Sbjct: 6   DHQKFFYFLLFAVTVGLCGILAPFSGAVFWGTILAILFQPVQRWLAARFGKRRNLAALVT 65

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWASELWTK 125
              ++ + I+PL+F+    + E+  +  ++  A  +        +  +P       L  K
Sbjct: 66  MTLIILIVILPLVFVTATLVQEIAYVYQELKDAQPNYSQYFQDIIHALPTS--IQHLLQK 123

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +            T        F    A   G     + +S   M+  +FF  RDG  I 
Sbjct: 124 YGLTNIPGIQKKLTDGAAQISQFAASQALSIGQNTFQFIVSFGVMLYMVFFLLRDGGEIG 183

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +++      L   +   +      V+R+T  G   +A+ +G + G  +W+ G+   V  G
Sbjct: 184 RRVRRALP-LDEEHKNLLLAKFTTVVRATVKGNIAVALVQGALGGLIFWILGIQGVVLWG 242

Query: 246 VITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            + A ++++P  GA + +   ++Y L+ G ++    L  +    + +VD  LRP LVG  
Sbjct: 243 ALMAFLSLLPAIGASLVWVPAALYFLMTGAVWKCVILVAFCVGVIGLVDNLLRPILVGKD 302

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            K+P        +GG+   G+ G  IGP++ AL    W     A +
Sbjct: 303 TKMPDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIYARAEQ 348


>gi|288934305|ref|YP_003438364.1| hypothetical protein Kvar_1426 [Klebsiella variicola At-22]
 gi|288889034|gb|ADC57352.1| protein of unknown function UPF0118 [Klebsiella variicola At-22]
          Length = 369

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 75/337 (22%), Positives = 140/337 (41%), Gaps = 5/337 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G    ++  + L     L  +++ +L A I+     P+ +   ++  E +   A++  V
Sbjct: 8   KGFFILIVFIVTLAFFDVLSPYYSAILWAAILAVIFNPVKNKIRTRLGERNGLAALLTIV 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHL 127
            +  +   PL  +      E+  + SK+   + Q    V    + +PG  WA     +H 
Sbjct: 68  IICLIVFTPLAIILSSLAYELNVVYSKLQHNDTQFPTVVASLFAHLPG--WARGFLAEHN 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                      + +      ++   A   G     + +S   M+  LFF  +DG  +   
Sbjct: 126 LDSAQQIQQQLSDVALKSGQYLAGSAFLIGKGTFGFTVSFGIMLYLLFFLLKDGPYLV-L 184

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L      L     + +      V R+T  G   +A+ +G + G A+W+AG+   +  G +
Sbjct: 185 LTLESLPLSSYVKQHLFAKFAAVARATVKGTVAVALAQGALGGFAFWVAGLDGSILWGAL 244

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A +++IP  G+ I +   +IYL   G ++    +  +  I + +VD  LRP LVG   K
Sbjct: 245 MAFLSLIPAVGSAIIWVPAAIYLFATGQLWQGAFIVGFFVIVIGLVDNILRPLLVGKDTK 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +P        +GG+   G+ G  IGP++ AL    W 
Sbjct: 305 MPDYLILIATLGGMEIYGINGFVIGPLIAALFIACWN 341


>gi|167819115|ref|ZP_02450795.1| hypothetical protein Bpse9_28538 [Burkholderia pseudomallei 91]
 gi|167827496|ref|ZP_02458967.1| hypothetical protein Bpseu9_27695 [Burkholderia pseudomallei 9]
 gi|226195214|ref|ZP_03790805.1| putative membrane protein [Burkholderia pseudomallei Pakistan 9]
 gi|254189761|ref|ZP_04896270.1| putative membrane protein [Burkholderia pseudomallei Pasteur 52237]
 gi|254300035|ref|ZP_04967481.1| putative membrane protein [Burkholderia pseudomallei 406e]
 gi|157809903|gb|EDO87073.1| putative membrane protein [Burkholderia pseudomallei 406e]
 gi|157937438|gb|EDO93108.1| putative membrane protein [Burkholderia pseudomallei Pasteur 52237]
 gi|225933019|gb|EEH29015.1| putative membrane protein [Burkholderia pseudomallei Pakistan 9]
          Length = 356

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 95/325 (29%), Positives = 161/325 (49%), Gaps = 7/325 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSF--ISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A ++    WP       +      +T +A + T +V  L +VP+    
Sbjct: 35  WVIRDFMPAIAWACVVAIALWPALRRIDALPALRGRATLVAALLTSAVALLVVVPIAAGL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-MWASELWTKHLSHPQSLKILSETFL 141
              + +  EL+  +    Q GIP P  LS +P G   AS  W  +L+ P    +   T +
Sbjct: 95  VEAVDQSHELLGWLHRVEQTGIPEPDVLSHLPFGSQQASAWWQANLAKP----LHPATAV 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
           K      +  F   FG       +   FM++ LF  ++ G  +S  L +     F     
Sbjct: 151 KGVDGASVVTFGRHFGSRLAHAAVLFGFMLVTLFVIFQAGPRLSGSLLTGVRRAFGDSGA 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            + + +   +  T  G+ ++  GEG++LG AY  AG+P    LG++TAI AM+P  AP+ 
Sbjct: 211 ALLQRMAAAVYGTVTGLVVVGFGEGVLLGLAYAFAGLPHAALLGLVTAIAAMLPFCAPLV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G +  A  L  +G++ +F+ +  +RP L+G   +LPFL   FG++GG  
Sbjct: 271 FGGAALWLFVQGALGWAIGLAAFGSVVVFVAEHFVRPVLIGNSARLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKESI 346
           T GLLGLF+GP LM ++ V+W E +
Sbjct: 331 TFGLLGLFVGPALMTVLTVLWAEWV 355


>gi|83716829|ref|YP_439890.1| hypothetical protein BTH_II1696 [Burkholderia thailandensis E264]
 gi|83650654|gb|ABC34718.1| membrane protein, putative [Burkholderia thailandensis E264]
          Length = 391

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 95/325 (29%), Positives = 163/325 (50%), Gaps = 7/325 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSF--ISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A ++    WP       +      +T +A   T ++  L +VP+    
Sbjct: 70  WVIRDFIPAIAWAGVVAIALWPALRRIDALPAFHGRATLVAAALTAAIALLVVVPVAAGL 129

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-MWASELWTKHLSHPQSLKILSETFL 141
              + + +EL+  +    Q GIP+P  LS +P G   AS  W  HL+ P    +   + +
Sbjct: 130 VEAIEQSRELLGWLHRVEQTGIPMPDALSHLPFGSQQASAWWQAHLAQP----LHPASAV 185

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
           K      +  F   FG   +   +   FM++ LF  +R G  +S  L +     F     
Sbjct: 186 KGVDGGSVVTFGRHFGSRLVHAAVLFGFMLVTLFVIFRAGPRLSGALLTGVRRAFGDSGA 245

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            + + +   +  T  G+ ++  GEG++LG AY  AG+P    LG++TA+ AM+P  AP+ 
Sbjct: 246 ALLQRMAAAVHGTVTGLVVVGFGEGVLLGLAYAFAGLPHAALLGLVTAVAAMLPFCAPLV 305

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G +  A  L  +GA+ +F+ +  +RP L+G   +LPFL   FG++GG  
Sbjct: 306 FCGAALWLFVQGALGWAIGLAAFGAVVVFVAEHFVRPVLIGSSARLPFLLVLFGILGGAE 365

Query: 322 TMGLLGLFIGPVLMALIAVIWKESI 346
           T GLLGLF+GP LM ++ V+W E +
Sbjct: 366 TFGLLGLFVGPALMTVLTVLWAEWV 390


>gi|262373577|ref|ZP_06066855.1| permease [Acinetobacter junii SH205]
 gi|262311330|gb|EEY92416.1| permease [Acinetobacter junii SH205]
          Length = 372

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 91/332 (27%), Positives = 163/332 (49%), Gaps = 9/332 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEE--SSTFLAVIATVSVMCLFIVPLLFLFY 83
            LK F  PVL A II + +WP+Y     +       T  A I    V+ +  +P +F  +
Sbjct: 34  ILKYFIVPVLWAAIIAYMTWPVYLWVQRRFFGENRPTLNATIMITLVILVIGIPFIFAIF 93

Query: 84  YGMLEMKELVSKVVLANQHG-IPVPRWLSDIPG-GMWASELWTKHLSHPQSLKILSETFL 141
              LE + L   +      G I VP ++ ++P  G   S    +  + P S+      ++
Sbjct: 94  MLQLEGRNLYFNLQKQLFSGHIQVPDFIRNLPIIGKDISRTVNELSADPNSITKNVAEWI 153

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
           + +       +            + + F I+ LFFFYRDG  I  Q+    E +      
Sbjct: 154 QGH-----LSYGRFVLSEISRNLVKLTFAIMTLFFFYRDGQLILSQVSRALEMVIGPRVH 208

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
                + +  R+   G+ + A+ + ++ G +Y++A VP+ + L ++T I+A+IP G PIS
Sbjct: 209 HYLETISETTRAVVYGVGLTAVAQAILAGLSYFVADVPNPMLLTMVTFILALIPFGTPIS 268

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           + +V ++L  +G    A  + +WG + +   D  +RP ++ G  K+PF+   FG++GG+ 
Sbjct: 269 YLSVGLWLFAQGQTVEAIGVVVWGLLVVSSSDNVIRPLVISGATKIPFILIMFGVLGGIA 328

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           + GL+GLFIGPV++A++  IW+E +    +  
Sbjct: 329 SFGLVGLFIGPVILAILLAIWREWLHENVQEP 360


>gi|86747614|ref|YP_484110.1| hypothetical protein RPB_0488 [Rhodopseudomonas palustris HaA2]
 gi|86570642|gb|ABD05199.1| Protein of unknown function UPF0118 [Rhodopseudomonas palustris
           HaA2]
          Length = 371

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 75/345 (21%), Positives = 152/345 (44%), Gaps = 3/345 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
                 +++    +  ++ L  F+  +L  ++I     P+Y              AV+  
Sbjct: 5   DNKFFIFLLAAASVAFVWILLPFYGALLWGVVIAILFAPLYRQLNRAFGFRRNLAAVVGV 64

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             ++ L ++P   +      E   L +++   N   +   R   + P   W ++L  +  
Sbjct: 65  TVIVLLVLLPFSAIGTALAKEATGLYARIESGNLALLNNLRNFIEQPPS-WINDLLERFG 123

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +      + +   G  ++   A   G   +D+ +++  M+  LFF  RDG  I+ +
Sbjct: 124 IGSVAELQQRLSSVLMRGSQYLAGQALTIGQSTVDFTVNLFVMLYLLFFLLRDGDLIAGR 183

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L   G  L       +      VIR+T  G  +IA+ +G + G A+++ G+   +   V+
Sbjct: 184 LRR-GLPLSVDQQNLLLNKFTVVIRATVKGNMLIALIQGALGGLAFYVLGIGGALLWAVV 242

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A ++++P  GA + +  V++YL+  G+++    L  +GA+ + +VD  LRP LVG   +
Sbjct: 243 MAFVSLLPAVGAGLVWAPVAVYLIATGSMWQGILLIAYGALVIGMVDNVLRPVLVGKDTR 302

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           +P        +GG++  GL G  IGPV+ A+   +W     + ++
Sbjct: 303 MPDYVVLISTLGGLQVFGLNGFVIGPVIAAMFIAVWDIYSASRED 347


>gi|306840623|ref|ZP_07473375.1| transmembrane protein [Brucella sp. BO2]
 gi|306289361|gb|EFM60597.1| transmembrane protein [Brucella sp. BO2]
          Length = 351

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 77/352 (21%), Positives = 150/352 (42%), Gaps = 7/352 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     ++  + +   + L  ++  VL A+I+    +P+    +          A 
Sbjct: 1   MSVQRASFYILLTLVTIAFAWLLIPYYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAF 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW--ASEL 122
           ++ +  +CL I+P+L +F   + E   L  ++         +  +++ I   +     E 
Sbjct: 61  LSVLMCICLVIIPMLAIFGSLVDEGTSLYQRLSSRE---FDINGYIARIMAALPESLEEW 117

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             +      +      + +   G          FG   L + +    M+  LFF +RDG 
Sbjct: 118 LKRFELGTFADWRARISSVVMQGSQLFAARLVSFGQNTLQFFIGFGIMLYLLFFLFRDGA 177

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + +++      L   Y ++       VIR+T  G  IIAI +G++ G  +WL G+ + +
Sbjct: 178 DVGKKIRR-AIPLSDDYTRQFLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAAL 236

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             GVI    +M+P  GA + +T  +++  + G+ ++   L L G + + +VD  LRP LV
Sbjct: 237 LWGVIMTFCSMLPAVGAALVWTPAAVWFFVSGDWWSGAILVLVGVLVIGLVDNLLRPPLV 296

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G   ++P        VGG+  +G+ G  IGP++ A+    W       K+  
Sbjct: 297 GKGTRMPDYVVLISTVGGISLIGINGFVIGPLIAAMFIAAWSLLAEEQKDQH 348


>gi|167722951|ref|ZP_02406187.1| hypothetical protein BpseD_28289 [Burkholderia pseudomallei DM98]
          Length = 356

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 95/325 (29%), Positives = 160/325 (49%), Gaps = 7/325 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSF--ISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A ++    WP       +      +T +A + T +V  L +VP+    
Sbjct: 35  WVIRDFMPAIAWACVVAIALWPALRRIDALPALRGRATLVAALLTSAVALLVVVPIAAGL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-MWASELWTKHLSHPQSLKILSETFL 141
              + +  EL+  +    Q GIP P  LS +P G   AS  W  +L+ P    +   T +
Sbjct: 95  VEAVDQSHELLGWLHRVEQTGIPEPDVLSHLPFGSQQASAWWQANLAKP----LHPATAV 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
           K      +  F   FG       +   FM++ LF  ++ G  +S  L +     F     
Sbjct: 151 KGVDGASVVTFGRHFGSRLAHAAVLFGFMLVTLFVIFQAGPRLSGSLLTGVRRAFGDSGA 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            + + +   +  T  G+ ++  GEG++LG AY  AG+P    LG++TAI AM+P  AP+ 
Sbjct: 211 ALLQRMAAAVYGTVTGLVVVGFGEGVLLGLAYTFAGLPHAALLGLVTAIAAMLPFCAPLV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G +  A  L  +G++ +F  +  +RP L+G   +LPFL   FG++GG  
Sbjct: 271 FGGAALWLFVQGALGWAIGLAAFGSVVVFAAEHFVRPVLIGNSARLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKESI 346
           T GLLGLF+GP LM ++ V+W E +
Sbjct: 331 TFGLLGLFVGPALMTVLTVLWAEWV 355


>gi|152971165|ref|YP_001336274.1| putative transport protein [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238895753|ref|YP_002920489.1| putative transport protein [Klebsiella pneumoniae NTUH-K2044]
 gi|150956014|gb|ABR78044.1| putative transport protein [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238548071|dbj|BAH64422.1| putative transport protein [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 369

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 74/337 (21%), Positives = 139/337 (41%), Gaps = 5/337 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G    ++  + L     L  +++ +L A I+     P+ +   ++  E +   A++  V
Sbjct: 8   KGFFILIVFIVTLAFFDVLSPYYSAILWAAILAVIFNPVKNKIRTRLGERNGLAALMTIV 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHL 127
            +  +   PL  +      E+  + SK+   + Q    V    + +PG  WA      H 
Sbjct: 68  IICLIVFTPLAIILSSLAYELNLVYSKLQHNDTQFPTVVASLFAHLPG--WARSFLADHN 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                      +     G  ++   A   G     + +S   M+  LFF  +DG  +   
Sbjct: 126 LDSAQQIQQQLSDAALKGGQYLAGSAFLIGKGTFGFTVSFGIMLYLLFFLLKDGPYLVLL 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L     + +      V R+T  G   +A+ +G + G A+W+AG+   +  G +
Sbjct: 186 ILE-SLPLSSYVKQHLFAKFAAVARATVKGTVAVALAQGALGGFAFWIAGLDGSILWGAL 244

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A +++IP  G+ I +   +IYL   G ++    +  +  I + +VD  LRP LVG   +
Sbjct: 245 MAFLSLIPAVGSAIIWVPAAIYLFATGQLWQGAFIVGFFVIVIGLVDNILRPLLVGKDTR 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +P        +GG+   G+ G  IGP++ AL    W 
Sbjct: 305 MPDYLILIATLGGMEIYGINGFVIGPLIAALFIACWN 341


>gi|53721751|ref|YP_110736.1| hypothetical protein BPSS0723 [Burkholderia pseudomallei K96243]
 gi|76817947|ref|YP_337450.1| hypothetical protein BURPS1710b_A2299 [Burkholderia pseudomallei
           1710b]
 gi|126455713|ref|YP_001075020.1| hypothetical protein BURPS1106A_A0984 [Burkholderia pseudomallei
           1106a]
 gi|167741935|ref|ZP_02414709.1| hypothetical protein Bpse14_27958 [Burkholderia pseudomallei 14]
 gi|167848970|ref|ZP_02474478.1| hypothetical protein BpseB_27141 [Burkholderia pseudomallei B7210]
 gi|167914234|ref|ZP_02501325.1| hypothetical protein Bpse112_27347 [Burkholderia pseudomallei 112]
 gi|217418668|ref|ZP_03450175.1| putative membrane protein [Burkholderia pseudomallei 576]
 gi|237509212|ref|ZP_04521927.1| putative membrane protein [Burkholderia pseudomallei MSHR346]
 gi|242312985|ref|ZP_04812002.1| putative membrane protein [Burkholderia pseudomallei 1106b]
 gi|254183096|ref|ZP_04889688.1| putative membrane protein [Burkholderia pseudomallei 1655]
 gi|254192859|ref|ZP_04899294.1| putative membrane protein [Burkholderia pseudomallei S13]
 gi|254262513|ref|ZP_04953378.1| putative membrane protein [Burkholderia pseudomallei 1710a]
 gi|52212165|emb|CAH38183.1| putative membrane protein [Burkholderia pseudomallei K96243]
 gi|76582420|gb|ABA51894.1| putative membrane protein [Burkholderia pseudomallei 1710b]
 gi|126229481|gb|ABN92894.1| putative membrane protein [Burkholderia pseudomallei 1106a]
 gi|169649613|gb|EDS82306.1| putative membrane protein [Burkholderia pseudomallei S13]
 gi|184213629|gb|EDU10672.1| putative membrane protein [Burkholderia pseudomallei 1655]
 gi|217397972|gb|EEC37987.1| putative membrane protein [Burkholderia pseudomallei 576]
 gi|235001417|gb|EEP50841.1| putative membrane protein [Burkholderia pseudomallei MSHR346]
 gi|242136224|gb|EES22627.1| putative membrane protein [Burkholderia pseudomallei 1106b]
 gi|254213515|gb|EET02900.1| putative membrane protein [Burkholderia pseudomallei 1710a]
          Length = 356

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 95/325 (29%), Positives = 160/325 (49%), Gaps = 7/325 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSF--ISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A ++    WP       +      +T +A + T +V  L +VP+    
Sbjct: 35  WVIRDFMPAIAWACVVAIALWPALRRIDALPALRGRATLVAALLTSAVALLVVVPIAAGL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-MWASELWTKHLSHPQSLKILSETFL 141
              + +  EL+  +    Q GIP P  LS +P G   AS  W  +L+ P    +   T +
Sbjct: 95  VEAVDQSHELLGWLHRVEQTGIPEPDVLSHLPFGSQQASAWWQANLAKP----LHPATAV 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
           K      +  F   FG       +   FM++ LF  ++ G  +S  L +     F     
Sbjct: 151 KGVDGASVVTFGRHFGSRLAHAAVLFGFMLVTLFVIFQAGPRLSGSLLTGVRRAFGDSGA 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            + + +   +  T  G+ ++  GEG++LG AY  AG+P    LG++TAI AM+P  AP+ 
Sbjct: 211 ALLQRMAAAVYGTVTGLVVVGFGEGVLLGLAYAFAGLPHAALLGLVTAIAAMLPFCAPLV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G +  A  L  +G++ +F  +  +RP L+G   +LPFL   FG++GG  
Sbjct: 271 FGGAALWLFVQGALGWAIGLAAFGSVVVFAAEHFVRPVLIGNSARLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKESI 346
           T GLLGLF+GP LM ++ V+W E +
Sbjct: 331 TFGLLGLFVGPALMTVLTVLWAEWV 355


>gi|237731362|ref|ZP_04561843.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226906901|gb|EEH92819.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 369

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 71/348 (20%), Positives = 145/348 (41%), Gaps = 7/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G   +++  +       L  +F+ +L A I+     P+ +   S   E +   ++I  V
Sbjct: 8   KGFFIFILALVTWAFFDVLSPYFSAILWAAILTTIFNPVKNRLRSALGERNGLASLITIV 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM--WASELWTKH 126
            +  +  +PL+ +     +E+  + +K+    Q+    P  ++ I   +  WA     +H
Sbjct: 68  IICLIVFIPLMVILSSLAIELNVVYTKL---QQNDTQFPEVVTSILSFLPDWARGFLAEH 124

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                +      + +   G  ++   A   G     + +S   M+  LFF  +DG  + +
Sbjct: 125 NLDDIAQIQKKLSDVVLQGGQYLAGSAFLIGKGTFGFAISFGIMLYLLFFLLKDGPYLVR 184

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           Q+      L     + +      V R+T  G  ++A+ +G++ G A+ +  +   V  G 
Sbjct: 185 QILD-SLPLSDFAKQHLFAKFVGVTRATVKGTAVVALVQGILGGIAFAIVDIDGSVLWGA 243

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           + A ++++P  G+ I +   +I+L     ++    +  +  I + +VD  LRP LVG   
Sbjct: 244 LMAFLSLVPAVGSAIVWVPAAIFLFATHQLWQGLFIVGFFVIIVGLVDNILRPLLVGKDT 303

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           K+P        +GG+   G+ G  IGP++ AL    W        E  
Sbjct: 304 KMPDYLILITTLGGMEIYGINGFVIGPLIAALFITCWNLFSGRDHEGN 351


>gi|146307480|ref|YP_001187945.1| hypothetical protein Pmen_2457 [Pseudomonas mendocina ymp]
 gi|145575681|gb|ABP85213.1| protein of unknown function UPF0118 [Pseudomonas mendocina ymp]
          Length = 362

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 80/334 (23%), Positives = 150/334 (44%), Gaps = 7/334 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + L  F++ +  A ++ F SWP+        +   +  A I T   + L   PL++L + 
Sbjct: 22  WVLAPFWSALFWAAVLAFASWPLMRLLTQLLKGRLSLAAGILTCGWVILVAGPLIWLGFN 81

Query: 85  GMLEMKELVSKVVLANQHGIPVP-RWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLK 142
               +K+  + +      G+P P  WL+ +P  G   + LW        +       +L 
Sbjct: 82  LADHIKDANALIKDLQVEGLPPPPAWLTGLPLVGERLAALWMTIDQQGAAFFASLRPYLG 141

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
             G   + R A   G +       ++      FFFYRDG  ++  +  L E L       
Sbjct: 142 QVGNWLLARSAQLGGGMLELGLSLVLV-----FFFYRDGPRLAVFVHGLLERLIGERADH 196

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
              +V   ++    G+   A  +GL+    +W+AGVP  + LG++T +++++P G P+ +
Sbjct: 197 YLELVAGTVQRVVNGVIGTAAAQGLLALIGFWIAGVPGAIVLGILTFVLSLVPMGPPLVW 256

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              + +L+ +G+   A  L +WG   +  VD  L+P+L+     LP +    G+ GG+  
Sbjct: 257 IPATAWLVWQGDYGFALFLGVWGMFVISGVDNILKPYLISRGGNLPLVVVLLGVFGGLLA 316

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            G +GLF+GP L+A+   +  + +       E++
Sbjct: 317 FGFMGLFLGPTLLAVAYSLLSDWVADKAPPAEEV 350


>gi|134278850|ref|ZP_01765563.1| putative membrane protein [Burkholderia pseudomallei 305]
 gi|167905924|ref|ZP_02493129.1| hypothetical protein BpseN_27051 [Burkholderia pseudomallei NCTC
           13177]
 gi|134249269|gb|EBA49350.1| putative membrane protein [Burkholderia pseudomallei 305]
          Length = 356

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 96/325 (29%), Positives = 161/325 (49%), Gaps = 7/325 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSF--ISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A ++    WP       +      +T +A + T +V  L +VP+    
Sbjct: 35  WVIRDFMPAIAWACVVAIALWPALRRIDALPALRGRATLVAALLTSAVALLVVVPIAAGL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-MWASELWTKHLSHPQSLKILSETFL 141
              + +  EL+  +    Q GIP P  LS +P G   AS  W  +L+ P    +   T +
Sbjct: 95  VEAVDQSHELLGWLHRVEQTGIPEPDVLSHLPFGSQQASAWWQANLAKP----LHPATAV 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
           K      +  F   FG       +   FM++ LF  ++ G  +S  L +     F     
Sbjct: 151 KGVDGASVVTFGRHFGSRLAHAAVLFGFMLVTLFVIFQAGPRLSGSLLTGVRRAFGDSGA 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            + + +   +  T  G+ ++  GEG++LG AY LAG+P    LG++TAI AM+P  AP+ 
Sbjct: 211 ALLQRMAAAVYGTVTGLVVVGFGEGVLLGLAYALAGLPHAALLGLVTAIAAMLPFCAPLV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G +  A  L  +G++ +F  +  +RP L+G   +LPFL   FG++GG  
Sbjct: 271 FGGAALWLFVQGALGWAIGLAAFGSVVVFAAEHFVRPVLIGNSARLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKESI 346
           T GLLGLF+GP LM ++ V+W E +
Sbjct: 331 TFGLLGLFVGPALMTVLTVLWAEWV 355


>gi|77459939|ref|YP_349446.1| hypothetical protein Pfl01_3717 [Pseudomonas fluorescens Pf0-1]
 gi|77383942|gb|ABA75455.1| putative membrane protein [Pseudomonas fluorescens Pf0-1]
          Length = 353

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 78/338 (23%), Positives = 149/338 (44%), Gaps = 7/338 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            ++  + +  ++ L  F+  V  A+I+G    P+      K        ++      + +
Sbjct: 13  VLLFLVTVAFIWILLPFYGAVFWAVILGILFAPMQRQLQLKFGWQRNLTSLCTLSICLVI 72

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            I+P++ L    + E   L   +       + +  +L+     +               L
Sbjct: 73  AILPVIVLSVLLVQEGATLYDNIESG---KLDIGAYLAQFKHSLPPYFQHLLDRFGMGEL 129

Query: 134 KILSETFLKT--NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
             L E  +K    G   +   A  FG    ++ +S   M+  LFFF RDG  +++++ + 
Sbjct: 130 NALREKIVKAAMQGSQVLASQAFSFGQGTFEFVVSFFIMLYLLFFFLRDGAELARKVRTA 189

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L   + +++     +V+R+T  G  ++AI +G + G+ +W   +PS +   V+ A +
Sbjct: 190 IP-LEEHHKRRLQLKFNRVVRATVKGNLLVAITQGALGGAIFWFLDIPSALLWAVLMAFL 248

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +++P  GA I +  V++Y L+ G I+    L L+G   + +VD  LRP LVG   ++P  
Sbjct: 249 SLLPAVGAGIVWVPVAVYFLLSGMIWQGVVLGLFGVFVIGLVDNLLRPILVGKDTRMPDY 308

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
                 +GG+   GL G  IGP++ AL    W   I +
Sbjct: 309 MILISTLGGLAVFGLNGFVIGPLIAALFMSSWALFIES 346


>gi|316932016|ref|YP_004106998.1| hypothetical protein Rpdx1_0627 [Rhodopseudomonas palustris DX-1]
 gi|315599730|gb|ADU42265.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           DX-1]
          Length = 381

 Score =  215 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 76/353 (21%), Positives = 154/353 (43%), Gaps = 6/353 (1%)

Query: 8   PQGIMRWMIMFIILVSL---YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           P    ++ I+ ++ V+    + L   ++ VL  ++I     P+               A+
Sbjct: 2   PASENKFFILLLVTVTGLFGWILWPLYSAVLWGMVIAILFAPLNRWLNQAFGFRRNLAAL 61

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            +   ++ + ++PL  L      E   + +K+   N   +   R L           L  
Sbjct: 62  TSVTIIVLMVLLPLSLLGAALAREAAGMYTKIESGNLDLLNTLRELLAARPDWIGDLLGR 121

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             + +   L+      L   G  ++   A   G    D+ +++  M+  LFF  RDG  +
Sbjct: 122 FGVGNLADLQQRLSAVL-LRGSQYLAGQALGIGQSTFDFTVNLFVMVYLLFFLLRDGDLV 180

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           + ++      L   +  ++      VIR+T  G  +IA+ +G + G A+++ G+   +  
Sbjct: 181 AGRIRR-ATPLGVDHQTRLLDKFTVVIRATVKGNMLIALIQGSLGGLAFYVLGISGALMW 239

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            V+ A ++++P  GA + +  +++YL+  G+I++   L +WGA+ + +VD  LRP LVG 
Sbjct: 240 AVVMAFLSLLPAVGAGLVWLPMALYLIFTGSIWHGIGLIVWGALVIGMVDNVLRPILVGK 299

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
             ++P        +GG+   GL G  +GPV+ A+    W     + +E  +  
Sbjct: 300 DTRMPDYVVLISTLGGLEVFGLNGFVVGPVIAAMFIAAWDIYSTSREEAGDTP 352


>gi|148558731|ref|YP_001257437.1| hypothetical protein BOV_A0400 [Brucella ovis ATCC 25840]
 gi|225628899|ref|ZP_03786933.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
 gi|148370016|gb|ABQ62888.1| putative membrane protein [Brucella ovis ATCC 25840]
 gi|225616745|gb|EEH13793.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
          Length = 372

 Score =  215 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 77/355 (21%), Positives = 151/355 (42%), Gaps = 7/355 (1%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  M   +     ++  + +   + L  ++  VL A+I+    +P+    +         
Sbjct: 18  RVLMSVQRASFYILLTLVTIAFAWLLIPYYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNI 77

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW--A 119
            A ++ +  +CL I+P+L +F   + E   L  ++         +  +++ I   +    
Sbjct: 78  AAFLSVLMCICLVIIPMLAIFGSLVDEGTSLYQRLSSRE---FDINGYIARIMAALPESL 134

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            E   +      +      + +   G          FG   L + +    M+  LFF +R
Sbjct: 135 EEWLKRFELGTFADWRARISSVVMQGSQLFAARLVSFGQNTLQFFIGFGIMLYLLFFLFR 194

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  + +++      L   Y ++       VIR+T  G  IIAI +G++ G  +WL G+ 
Sbjct: 195 DGADVGKKIRRAIP-LSDDYTRQFLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIE 253

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           + +  GVI    +M+P  GA + +T  +++  + G+ ++   L + G + + +VD  LRP
Sbjct: 254 AALLWGVIMTFCSMLPAVGAALVWTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRP 313

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            LVG   ++P        VGG+  +G+ G  IGP++ A+    W       K+  
Sbjct: 314 PLVGKGTRMPDYVVLISTVGGISLIGINGFVIGPLIAAMFIAAWSLLAEEQKDQH 368


>gi|71064848|ref|YP_263575.1| hypothetical protein Psyc_0271 [Psychrobacter arcticus 273-4]
 gi|71037833|gb|AAZ18141.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
          Length = 379

 Score =  215 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 90/347 (25%), Positives = 171/347 (49%), Gaps = 7/347 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + +   +++ + ++    ++ F  P L   I+ + ++PIY+ F  +   SS F A I T
Sbjct: 12  QRLLAITLLVVLFVLCFQVVRFFIVPALWGAILAYVTFPIYNFFHQRVRFSSNFSATIMT 71

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPG-GMWASELWTK 125
           VS+  +  VPL+   +    E   L+S +V   + G + VP  + D+P  G    ++  +
Sbjct: 72  VSITLMIGVPLVAGIFILQQEALSLISNLVYRIKAGYLDVPDSVKDLPVIGQQVKDVLWR 131

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
              +P         +++++       +      +       +   ++ LFFFYRDG S+ 
Sbjct: 132 VNKNPAGTLETFRLWVQSHLY-----YGKIAFDVVFSSLAKLGMALMTLFFFYRDGTSLV 186

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +Q+     ++           V    R+   G+ + A+ + L+ G  Y+ A  PS + + 
Sbjct: 187 RQIRQALRNIIGNRIDGYIDSVGTTTRAVVYGIGLTALAQALLAGIGYYFASAPSPILMT 246

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++T I+A+IP G P  + ++S++LL +G+      L LWG + +  VD  +RP ++ G  
Sbjct: 247 ILTFIIALIPFGTPFVWGSISLFLLSQGHTVEGIGLALWGILVISWVDNLIRPIVISGAT 306

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           K+PF+  F G++GG+   G +GLFIGPV++A+   +W+E I   K  
Sbjct: 307 KIPFIIIFIGVLGGLTAFGFVGLFIGPVVLAIGLAVWREWISQHKNE 353


>gi|260596705|ref|YP_003209276.1| hypothetical protein CTU_09130 [Cronobacter turicensis z3032]
 gi|260215882|emb|CBA28407.1| hypothetical protein CTU_09130 [Cronobacter turicensis z3032]
          Length = 367

 Score =  215 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 72/354 (20%), Positives = 146/354 (41%), Gaps = 8/354 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           M + +    + I+ + +VS+ F   +K + + VL A+I+    +P+           +  
Sbjct: 1   MNSKEMSRAFFILILFIVSILFFNLVKPYLSAVLWAVILAVIFYPVKRRLCHMMNGRNNI 60

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV-PRWLSDIPGGMWAS 120
            +++  V +  L  VPL  +    + E   L + +   +     +    +  +P   WA 
Sbjct: 61  ASLLTVVLICVLVFVPLAVVASSLVREFNTLYTDLQANDTTFPTLLADGVRILP--DWAQ 118

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           ++  ++     +      + +   G  ++               +    M+  LFF  +D
Sbjct: 119 QMLAENHLDSAAAIQKKISGVALKGSQYVAGSIFLISRNTFSVVIGFGIMLYLLFFLLKD 178

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +   + +    L     +++ R    V R+T  G  ++AI +GL+ G A++ AG+ +
Sbjct: 179 GSRLVAVVLNAVP-LSDKVKQRLFRRFAAVSRATVKGTVVVAIVQGLLGGVAFYFAGIGA 237

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  G + A ++++P  GA + +    IYL   G I  A  L  +  + + + D  LRP 
Sbjct: 238 SILWGSLMAFLSLVPAVGAALIWVPAVIYLFTTGAIIKAVLLTAFFVVVVGLADNLLRPL 297

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           LVG  I++P        +GG+   G+ G  +GP++ AL    W           
Sbjct: 298 LVGKDIRMPDWLILLATLGGLEVYGINGFVVGPLIAALFVTCWNTFSAGPGRTH 351


>gi|170751399|ref|YP_001757659.1| hypothetical protein Mrad2831_5018 [Methylobacterium radiotolerans
           JCM 2831]
 gi|170657921|gb|ACB26976.1| protein of unknown function UPF0118 [Methylobacterium radiotolerans
           JCM 2831]
          Length = 372

 Score =  215 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 99/327 (30%), Positives = 161/327 (49%), Gaps = 7/327 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKK--EESSTFLAVIATVSVMCLFIVPLLFLF 82
           + L  F   +  A+++    WPIY     +    + +  L  + T +V  +F+ PL  L 
Sbjct: 45  WILHEFLPALAWAVVLAIALWPIYQRLEHRFPPGKHNILLPTLMTAAVALVFLAPLAILG 104

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM-WASELWTKHLSHPQSLKILSETFL 141
                E  ++   V  A  +GIP P +L  +P G   A+  W  +L H Q+        L
Sbjct: 105 IQAAREAHDVAEFVRNAEANGIPAPEFLQHLPYGAAQATAWWNDNLGHAQA----GSDLL 160

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
           +      +   +   G   +   +   F ++ALFF +RD  ++  Q  +    LF    +
Sbjct: 161 RRFENHSVLGASRNVGREVVHRIVLFGFSLVALFFLFRDWRTVRDQSLTACHRLFGPRGE 220

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +++R +   +  T  G+ ++ +GEG VLG  Y  AGVP  V LG  TA+ AMIP GA ++
Sbjct: 221 RVARQMVASVHGTVDGLVLVGLGEGFVLGIVYHFAGVPHPVLLGAFTAVAAMIPFGAAVA 280

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               ++ L+  G++  A  +   G +  F+ D  +RP L+GG  KLPFL    G++GGV 
Sbjct: 281 IAVAALLLVAAGSVTAALVVAAAGLVVTFVADHFIRPALIGGTTKLPFLWVLLGILGGVE 340

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMA 348
           T GLLGLF+GP +MA + ++W+E    
Sbjct: 341 TFGLLGLFVGPAVMAALVLLWREFTEG 367


>gi|91974818|ref|YP_567477.1| hypothetical protein RPD_0338 [Rhodopseudomonas palustris BisB5]
 gi|91681274|gb|ABE37576.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           BisB5]
          Length = 365

 Score =  215 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 75/345 (21%), Positives = 151/345 (43%), Gaps = 6/345 (1%)

Query: 10  GIMRWMIMFIILVSL---YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
              R+ I+ +++ S+   + L   ++ VL  ++I     P+Y              A+  
Sbjct: 4   SENRFFILLLLVASIGFGWILLPLYSAVLWGVVIAILFAPLYRQLNRAFGFRRNLAALTT 63

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
              ++ + I+P+  +      E + +  ++   N   +   + +   P    +  L    
Sbjct: 64  VAIIVTMVILPISLIGAALAQEARAMFLRIESGNLDMLQYLKQVLAEPPAWISGVLERFS 123

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           + +   L+      L   G  ++   A   G   ++  +++  M+  LFF  RDG  ++ 
Sbjct: 124 IGNLSDLQERLSAVL-MRGSQYLAGQAIGIGQGTVEIVINLGVMVYLLFFLLRDGDLLAA 182

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           ++      L      ++ R    VIR+T  G  +IA+ +G + G  +++ GV   +  GV
Sbjct: 183 RIRRAVP-LSVEQESQLLRKFTVVIRATVKGNMLIALIQGALGGVMFYILGVNGALLWGV 241

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           + A ++++P  GA + +  V++YLL  G+I+    L  +G + +  VD  LRP LVG   
Sbjct: 242 VMAFLSLLPAVGAGLVWLPVALYLLGTGSIWQGVALIAFGTMVIGTVDNVLRPVLVGKDT 301

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++P        +GG++  GL G  IGPV+ A+    W     + +
Sbjct: 302 RMPDYVVLISTLGGIQVFGLNGFVIGPVIAAIFIAAWDIYSASRE 346


>gi|90423586|ref|YP_531956.1| hypothetical protein RPC_2083 [Rhodopseudomonas palustris BisB18]
 gi|90105600|gb|ABD87637.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           BisB18]
          Length = 356

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 80/345 (23%), Positives = 155/345 (44%), Gaps = 3/345 (0%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
              +++ I L   + L  F+  +L  ++I     P+     +   +  T  A+I  + ++
Sbjct: 10  FLLLVVVISLAFGWILWPFYGAILWGVVIAVVFAPLSRRLAALMPQRPTLAALITLLIIV 69

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + I+PL  +      E   +  K+   +   +   + + ++    WA+ L  ++     
Sbjct: 70  FIVILPLTLVVASLAQEAASVYEKIQSKDLDLVRSFQEVLNVLPS-WATSLLERYGLASL 128

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                  +     G  FI   A   G    D+ L +  MI  LFF  RD  ++S+++ + 
Sbjct: 129 GAVQDKLSAGLLKGSQFIATQALNVGQSTFDFVLELFIMIYLLFFLLRDEAALSRRIRTA 188

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L P   K +      V+R+   G  ++A+ +G + G  +W  G+ + +   V+ A +
Sbjct: 189 IP-LRPEQQKALLNKFTVVVRAMIKGNMLVALLQGALGGLMFWFLGISASLLWAVLMAFL 247

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +++P  GA + +  V+IYLL  G+I+    L  +GA+ + +VD  LRP LVG   K+P  
Sbjct: 248 SLLPAVGAGLIWGPVAIYLLAIGSIWKGVLLIAYGALVIGLVDNILRPILVGKDTKMPDY 307

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                 +GG+   G+ G  IGPV+ AL   +W     + +++ + 
Sbjct: 308 IVLISTLGGIEVFGINGFVIGPVIAALFIAVWDIFSASRQQDAQP 352


>gi|289679219|ref|ZP_06500109.1| hypothetical protein PsyrpsF_38341 [Pseudomonas syringae pv.
           syringae FF5]
          Length = 330

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 74/312 (23%), Positives = 137/312 (43%), Gaps = 3/312 (0%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             ++ L  F+  V  A+I+G    P+      K   S    ++   +  + + I+P++ +
Sbjct: 21  AFIWILLPFYGAVFWAVILGIIFAPVQRKLQIKFNWSRNLTSLCTLMICLVIAILPVIVI 80

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E   L   V               D+      + L    +   + L+       
Sbjct: 81  SALLVQEGTTLYKNVETGQLDIAGYLAEFKDLLPHSMQALLDRLGMGDLEGLRDKIAK-G 139

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
              G  ++   A  FG    D+ +S+  M+  L+FF RDG  + +++ +    L     +
Sbjct: 140 AMQGSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRDGQELVRKIRTAFP-LGEQQKR 198

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPI 260
           ++     +V+R+T  G  ++A+ +G + G  +W+  +PS +   VI A ++++P  GA I
Sbjct: 199 RLQLKFTRVVRATVKGNVVVAVTQGALGGFIFWVLDIPSALLWAVIMAFLSLLPAVGAGI 258

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +  V++Y L+ G I+    L L+G   + +VD  LRP LVG   K+P        +GG+
Sbjct: 259 VWAPVAVYFLLSGMIWQGVVLGLFGVFVIGLVDNVLRPILVGKDTKMPDYLILISTLGGM 318

Query: 321 RTMGLLGLFIGP 332
              GL G  IGP
Sbjct: 319 SVFGLNGFVIGP 330


>gi|152987375|ref|YP_001349002.1| hypothetical protein PSPA7_3648 [Pseudomonas aeruginosa PA7]
 gi|150962533|gb|ABR84558.1| membrane protein, putative [Pseudomonas aeruginosa PA7]
          Length = 354

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 74/335 (22%), Positives = 148/335 (44%), Gaps = 8/335 (2%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
             SL+ L  F++ +  A ++ F SWP+            +  A + T+  + L  +PL++
Sbjct: 18  AASLWVLAPFWSALFWAAVLAFASWPLMRMLTRLLGGRESLAAGLLTLGWIVLVALPLVW 77

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIP-GGMWASELWTKHLSHPQSLKILSE 138
           L +     ++ L+  +      G+P P  W++ +P  G      W        +   + +
Sbjct: 78  LGFGLADNVRSLMELLKNLQVEGLPPPPSWMAGVPLVGDRLIGWWDSIDQQGVAFFYVLK 137

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
            ++   G   + R A   G       L ++  ++ +FFFYRDG  +   +    E L   
Sbjct: 138 PYVGEVGNWLLARSAKIGGG-----ILELVLSLVLIFFFYRDGPRLESIVHRALERLIGN 192

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             +    +V   ++    G+   A  + L+    + +AGVP  + LG++T + +++    
Sbjct: 193 RAEHYRDLVAGTVQRVVNGVIGTAAAQALLAWIGFTIAGVPGAMLLGLLTFVFSLL-MVP 251

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P+ +   + +L  +G+  +   L LWG   +  VD  L+P+L+     LP +    G+ G
Sbjct: 252 PLVWGPATAWLFFQGDYGHGIFLGLWGFFIISGVDNILKPYLISRGGNLPLVVVLLGVFG 311

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G+   G +GLF+GP+L+A+   +  + I +     
Sbjct: 312 GLLAFGFMGLFLGPILLAVAYNLVSDWIASTPRPP 346


>gi|311105126|ref|YP_003977979.1| hypothetical protein AXYL_01931 [Achromobacter xylosoxidans A8]
 gi|310759815|gb|ADP15264.1| hypothetical protein AXYL_01931 [Achromobacter xylosoxidans A8]
          Length = 363

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 75/345 (21%), Positives = 139/345 (40%), Gaps = 5/345 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M ++          +++ + +   + L  F+  V    ++     P+    +++      
Sbjct: 1   MSQSSSVHYRTFLLLLVVVTIAFGWLLWPFYGAVFWGAVLAIIFAPLQRRLVARIGGRRN 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWA 119
             A+I  + V+ L I+PL+ +    + E   L   V       G    + ++ +P     
Sbjct: 61  LAALITLLLVLLLVILPLIVISGSLVREGANLYQSVKSGQINFGAYFQQAMAALPPS--V 118

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            +L  +             +        F+   A   G     + +S   M+  LFF  R
Sbjct: 119 HDLLARFDLTDIPSLQEKLSAGAMQASQFLATQALNIGQDTFQFVISFGIMLYLLFFLLR 178

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  +S +L      L   + + + R    V+R+T  G   +A  +G + G  + +  + 
Sbjct: 179 DGPLLSARLKR-AMPLSDTHKQHLLRKFTTVVRATVKGNVAVAAAQGALGGIIFSILSIQ 237

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             +  GVI   ++++P  GA + +  V+IY L+ G       L L+G + + +VD  LRP
Sbjct: 238 GALLWGVIMGFLSLLPAIGAGLIWAPVAIYFLLTGATIKGVVLILFGVLVIGMVDNVLRP 297

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            LVG   K+P        +GG+   GL G  IGP++ AL    W 
Sbjct: 298 ILVGKDTKMPDYVVLISTLGGMALFGLNGFVIGPLIAALFMASWD 342


>gi|297539685|ref|YP_003675454.1| hypothetical protein M301_2517 [Methylotenera sp. 301]
 gi|297259032|gb|ADI30877.1| protein of unknown function UPF0118 [Methylotenera sp. 301]
          Length = 352

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 88/346 (25%), Positives = 164/346 (47%), Gaps = 8/346 (2%)

Query: 5   MLNPQGIMRWMIM-FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           M+N   + R  I+  +++  +Y L+ F A  L A I    +WP+Y     +  +  T+ A
Sbjct: 1   MINTNQVTRIAIITLLVIGCIYVLQPFMAAALFAAIFCLFTWPLYHRLWLRLGKRDTWAA 60

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASE 121
           +I T+ ++   I+P+ +L         +L +++    Q   P VP W+ ++P  G   S 
Sbjct: 61  MIMTLLLLIALILPMAYLAMNLADSSDQLFNELGTRLQSLQPKVPDWVRNLPIVGEQISH 120

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            W +  +  + L  L   + +      +  FA R   +     L ++ ++   FFFYRDG
Sbjct: 121 SWERATASQEELMKLLRQYYEP-----MRTFALRAVQLVAGGFLQLLLVVFVAFFFYRDG 175

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I+Q L ++   L     +++  +    ++   LG+   A+ + +V    + LAG P+ 
Sbjct: 176 TRIAQGLVTIVRRLGGELGEEMLILSCNTVKGVMLGIFGTALAQSVVAMIGFLLAGAPAP 235

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           + L   T  +++IP G P+ +   S +L  +G    A  L L+G + +  VD  ++P L+
Sbjct: 236 LLLACATFFLSVIPVGPPLIWGGASFWLYSQGEHGWAIFLALYGLLAISTVDNVVKPILI 295

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
                LP L   FG++GG  T G +G+F+GP L+A+   +    + 
Sbjct: 296 SHSSHLPLLLIVFGVLGGALTFGFIGIFLGPTLLAVGFTLMLHWMA 341


>gi|330015775|ref|ZP_08308269.1| hypothetical protein HMPREF9538_05993 [Klebsiella sp. MS 92-3]
 gi|328530551|gb|EGF57419.1| hypothetical protein HMPREF9538_05993 [Klebsiella sp. MS 92-3]
          Length = 369

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 74/337 (21%), Positives = 137/337 (40%), Gaps = 5/337 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G    ++  + L     L  +++ +L A I+     P  +    +  E +   A++  V
Sbjct: 8   KGFFILIVFIVTLAFFDVLSPYYSAILWAAILAVIFNPDKNKPRPRLGERNGLAALMTIV 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHL 127
            +  +   PL  +      E+  + SK+   + Q    V    + +PG  WA      H 
Sbjct: 68  IICLIVFTPLAIILSSLAYELNLVYSKLQHNDTQFPTVVASLFAHLPG--WARSFLADHN 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                      +     G  ++   A   G     + +S   M+  LFF  +DG  +   
Sbjct: 126 LDSAQQIQQQLSDAALKGGQYLAGSAFLIGKGTFGFTVSFGIMLYLLFFLLKDGPYLVLL 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L     + +      V R+T  G   +A+ +G + G A+W+AG+   +  G +
Sbjct: 186 ILE-SLPLSSYVKQHLFAKFAAVARATVKGTVAVALAQGALGGFAFWIAGLDGSILWGAL 244

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A +++IP  G+ I +   +IYL   G ++    +  +  I + +VD  LRP LVG   +
Sbjct: 245 MAFLSLIPAVGSAIIWVPAAIYLFATGQLWQGAFIVGFFVIVIGLVDNILRPLLVGKDTR 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +P        +GG+   G+ G  IGP++ AL    W 
Sbjct: 305 MPDYLILIATLGGMEIYGINGFVIGPLIAALFIACWN 341


>gi|192360560|ref|YP_001981648.1| hypothetical protein CJA_1152 [Cellvibrio japonicus Ueda107]
 gi|190686725|gb|ACE84403.1| putative membrane protein [Cellvibrio japonicus Ueda107]
          Length = 387

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 84/349 (24%), Positives = 150/349 (42%), Gaps = 8/349 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +N +   R  ++F++ VS+ F   L+ FF  +  A  I    +P++   +      +   
Sbjct: 1   MNKKLETRTFLLFLLAVSIAFILVLRPFFGTIFWACAITIIFYPLHLRLVELTRGRTNTS 60

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A++  V+ + + ++P +FL    + E      K+       I   +++  +     A + 
Sbjct: 61  ALLTLVACILIVVLPAIFLISSVVREGAVFYGKLQSGE---INPAQYIEQLRTAFPAVQQ 117

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             +HL         +   L  +    I +     G       L+I  M+   FF  RDG 
Sbjct: 118 ALEHLEIDIDNLKKNALDLGMSSGKLIAQHLLNAGQNTFILLLNICLMLYLTFFLLRDGP 177

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + + L      L  A  + +     +V R+T  G  +IA+ +G + G  +W+ G+P  +
Sbjct: 178 QLLELLIRALP-LGDARERLLFAKFGEVTRATIKGNLVIAVIQGSLGGLIFWVLGIPGAL 236

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             GV+ AI+++IP  G  + +  V+IYL   G+      L  +G   + ++D  LRP LV
Sbjct: 237 LWGVVMAILSLIPAVGPALIWLPVAIYLFATGDFTKGAILVAFGGGVIGLIDNILRPILV 296

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           G   KLP        +GG+   G+ G  IGP++ AL    W   I  I 
Sbjct: 297 GRDTKLPDYIVLLSTLGGLGLFGVNGFIIGPLVAALFMAFWGIFIREIH 345


>gi|162148843|ref|YP_001603304.1| putative permease [Gluconacetobacter diazotrophicus PAl 5]
 gi|209545409|ref|YP_002277638.1| hypothetical protein Gdia_3296 [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161787420|emb|CAP57015.1| putative permease [Gluconacetobacter diazotrophicus PAl 5]
 gi|209533086|gb|ACI53023.1| protein of unknown function UPF0118 [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 381

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 104/362 (28%), Positives = 182/362 (50%), Gaps = 7/362 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE--S 58
           MRE     +     + MF  L++LY ++GF   ++   I    +WP+Y++   + +    
Sbjct: 21  MRERHRVQRVARFLLAMFFTLLALYTIRGFLPSLIWGGIFAIVAWPLYAATRERWKSLPG 80

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM- 117
            T L ++ T  +  +F+VP+         E + +V+    A   G+PVP W+  +P G  
Sbjct: 81  GTILPLLFTTGIALIFLVPMGLFALEAAREAQSVVTWANEARHSGMPVPGWIQRLPLGSA 140

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
             +  W  HL++P  +  L  +F   +G+        R G       +  IF I+ LFF 
Sbjct: 141 TLAGWWQDHLANPDDVSDLLHSFNIGHGMQ----VTQRVGTQIFHRGVLFIFAILTLFFL 196

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            +DG S+++Q   +    F    + I++ +   I  T  G+ ++ +GEG ++G AY +AG
Sbjct: 197 LKDGESVTRQCLVVSRRAFGKRGETIAQQIIASIHGTVAGLVLVGLGEGALMGVAYLIAG 256

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
                  GV TA+ AMIP  A I+  AV++ LL+KG    A  +   G   +FI D  +R
Sbjct: 257 AQHPFLFGVFTAVAAMIPFCAVIAVAAVTLMLLVKGATIAAIAILALGLAVIFIADHFVR 316

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           P L+GG  ++PFL    G++GGV +  LLGLF+GP +M+++ ++W+       ++  +  
Sbjct: 317 PALIGGSTQMPFLWVLTGILGGVESWNLLGLFVGPAIMSVLHLLWRNWTRDRVQDGLREE 376

Query: 358 SN 359
           ++
Sbjct: 377 AD 378


>gi|116049570|ref|YP_791626.1| hypothetical protein PA14_43510 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296390001|ref|ZP_06879476.1| hypothetical protein PaerPAb_17706 [Pseudomonas aeruginosa PAb1]
 gi|313106640|ref|ZP_07792863.1| putative permease [Pseudomonas aeruginosa 39016]
 gi|115584791|gb|ABJ10806.1| putative permease [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310879365|gb|EFQ37959.1| putative permease [Pseudomonas aeruginosa 39016]
          Length = 355

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 76/334 (22%), Positives = 147/334 (44%), Gaps = 8/334 (2%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
            SL+ L  F++ +  A ++ F SWP+            +  A + T+  + L  +PL++L
Sbjct: 19  ASLWVLAPFWSALFWAAVLAFASWPLMRMLTRLLGGRESLAAGLLTLGWIVLVALPLIWL 78

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIP-GGMWASELWTKHLSHPQSLKILSET 139
            +     ++ L+  +      G+P P  W++ +P  G      W        +   + + 
Sbjct: 79  GFGLADNVRSLMELLKNLQVEGLPPPPSWMAGVPLIGDRLIGWWNSIDQQGVAFFYVLKP 138

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
           ++   G   + R A   G       L ++  +I +FFFYRDG  +   +    E L    
Sbjct: 139 YVGEVGNWLLARSAKIGGG-----ILELVLSLILIFFFYRDGPRLESIVHRALERLIGNR 193

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            +    +V   ++    G+   A  + L+    + +AGVP  + LG++T   +++    P
Sbjct: 194 AEHYRDLVAGTVQRVVNGVIGTAAAQALLAWIGFTIAGVPGAMLLGLLTFACSLL-MVPP 252

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +   + +L  KG+  +   L LWG   +  VD  L+P+L+     LP +    G+ GG
Sbjct: 253 LVWGPATAWLFFKGDYGHGVFLGLWGFFIISGVDNILKPYLISRGGNLPLVVVLLGVFGG 312

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +   G +GLF+GP+L+A+   +  + I +     
Sbjct: 313 LLAFGFMGLFLGPILLAVAYNLLSDWIASTPRTP 346


>gi|327480919|gb|AEA84229.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 353

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 76/335 (22%), Positives = 148/335 (44%), Gaps = 3/335 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q +   +++ + L   + L  F+  V  A+I+     P+      +  +     A+   +
Sbjct: 8   QKVFLALLVVVSLAFGWILLPFYGAVFWAVILAIIFAPLQRYLYRRFSQRRNLTALFTLL 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + + ++P++ +    + E   L  ++         +   L ++      ++L      
Sbjct: 68  VCLLVAVLPVILITGMLVQEGATLYKQIKSGELDIGRLVSGLRELLPQSVQAQLQRFGFG 127

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S++    +     G  F+   A  FG     + +S   M+  LFFF RDG  +  ++
Sbjct: 128 DLDSMRERLAS-GALEGSQFLATKAFSFGQGTFQFLISFFVMLYLLFFFIRDGRELVARI 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 L  A   ++     +V+R+T  G  ++A+ +G + G  + + G+   +  GV+ 
Sbjct: 187 RKAIP-LSDAQKTRLFNKFTRVVRATVKGNIVVAVTQGALGGIIFAVLGISGALLWGVLM 245

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A ++++P  GA + +T V+IY L+ G I+    L L+G + + +VD  LRP LVG   K+
Sbjct: 246 AFLSLLPAVGAGLIWTPVAIYFLMTGAIWQGVILTLYGVLVIGLVDNILRPILVGKDTKM 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           P        +GG+   GL G  IGP++ AL    W
Sbjct: 306 PDYVVLISTLGGLALFGLNGFVIGPLVAALFISTW 340


>gi|27383175|ref|NP_774704.1| hypothetical protein blr8064 [Bradyrhizobium japonicum USDA 110]
 gi|27356349|dbj|BAC53329.1| blr8064 [Bradyrhizobium japonicum USDA 110]
          Length = 387

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 100/335 (29%), Positives = 168/335 (50%), Gaps = 6/335 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK-KEESSTFLAVIATVSVMC 72
              + I+ +SL+   GF + ++ A I+    WP+Y +F ++     S + A   T  V  
Sbjct: 47  VFALAIVALSLWTAAGFLSALIWATILAIALWPLYVAFANRVMSGPSGWSAFAFTCFVAV 106

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQ 131
           +   P+    Y    +  E+ + +  A + GI VP W++ +P     A + W  +LS PQ
Sbjct: 107 ILFTPMALAIYQVAQQSGEIAAWLKKARESGIEVPDWIARLPIAAEIAQQWWRANLSDPQ 166

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +     +     N  D      +  G   L     ++F ++ALF    +G S++ +    
Sbjct: 167 AATGWLKAISADNASDLF----NSLGGQLLHRMFMLLFSLVALFVLLSNGRSVASRFLET 222

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
            E +     + +   +   IR T  G  ++A+GEGL++G  Y +AGVP+ V   + T   
Sbjct: 223 SERILGHPGEGVVEKIVDSIRGTVNGTVVVAVGEGLLIGVGYLVAGVPNAVMFTIFTTAF 282

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           AM+P GA  +F+A ++ L+  GN   A  +F WGA+ +   D  + P LVGG  +LPFL 
Sbjct: 283 AMLPFGAWAAFSAAALTLISNGNEAAAAGVFCWGAVIMLAGDHFVWPVLVGGSARLPFLF 342

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            F G+ GG+   GL+GLF+GPV+MA +  +W+E +
Sbjct: 343 AFVGIFGGLAAFGLIGLFLGPVVMAALLTVWREWV 377


>gi|212704261|ref|ZP_03312389.1| hypothetical protein DESPIG_02316 [Desulfovibrio piger ATCC 29098]
 gi|212672341|gb|EEB32824.1| hypothetical protein DESPIG_02316 [Desulfovibrio piger ATCC 29098]
          Length = 368

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 75/344 (21%), Positives = 144/344 (41%), Gaps = 6/344 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
                ++  + L  L+ L+ FF  +   ++I   S P+Y +   ++       A+   + 
Sbjct: 11  RAFLLLLAGVSLAFLWMLRPFFDVIFWGIVIALLSTPVYDALQRRRMGR-NLAALTCVIL 69

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + L IVP  ++FY  + E+  L +++      G  +   L  +       + W     +
Sbjct: 70  SLVLIIVPCAYIFYTFINEVANLYARLTSG---GHDIRETLERLREVAPGVQDWLTRYGY 126

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              +     + L       + R     G   +++ + +  M+   FF  RDG  + + L 
Sbjct: 127 GPEVITQKLSELAVKISGLVARNTVALGGSTVNFLVDLCIMLYLAFFLVRDGKQL-RVLL 185

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                        +     +V+R+T  G  ++A+ +G + G  +W+ G+ + V  GV+  
Sbjct: 186 IRALPFGDHREDLLFAKFAEVLRATVKGSLLVAMAQGALGGLIFWILGIKAPVLWGVVMT 245

Query: 250 IMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++++IP  GA + +  V+ YLL+ G+  +   L  +G   + + D  LRP LVG   KLP
Sbjct: 246 LLSLIPVVGAGVVWAPVAGYLLLTGDHVSGVVLLAYGVFVIGLADNILRPVLVGRDTKLP 305

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
                   +GG    G+ G   GP+L  L   +WK  +   K  
Sbjct: 306 DFMVLLSTLGGFSLFGMDGFVTGPMLAVLFVTVWKIFMDEFKPP 349


>gi|115522818|ref|YP_779729.1| hypothetical protein RPE_0793 [Rhodopseudomonas palustris BisA53]
 gi|115516765|gb|ABJ04749.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           BisA53]
          Length = 355

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 146/348 (41%), Gaps = 19/348 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
                +I  + L   + L  F++ +L  L+I     P++    +   +  +  AV     
Sbjct: 7   KFFLLLIAAVTLAFGWVLMPFYSGLLWGLVIAILFMPLHRRLSAAMRDRDSLAAVSTVAI 66

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVL--------ANQHGIPVPRWLSDIPGGMWASE 121
           V+   ++PL  +      E     S++            Q    +P W++D    +  ++
Sbjct: 67  VIMSVLLPLSLIGAALAREAAITYSRLQSREFDLARLWQQVTGALPSWINDWINRVELAD 126

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L          L           G  F+   A   G    ++ +++  M+  LFF +RDG
Sbjct: 127 LGELQNKLSDGLLK---------GSQFLAGQALTIGQNTFEFAINLGVMLYLLFFLFRDG 177

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            ++SQ++      +    + ++      VIR+T  G  +IA+ +G + G   W  G+   
Sbjct: 178 EALSQRIRDALP-MREHLFDELLTKFIVVIRATIKGNMVIAMLQGALGGLMLWFLGIGGA 236

Query: 242 VALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +   V+ A ++++P  GA + +  V+IYLL  G ++    L  +G   + +VD  LRP L
Sbjct: 237 LLWAVVMAFLSLLPAIGAGLVWLPVAIYLLATGAVWKGVLLIAYGTFVIGMVDNLLRPIL 296

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           VG   K+P        +GG+   GL G  +GPV+ A+   +W     +
Sbjct: 297 VGKDTKMPDYVVLISTLGGLEVFGLNGFILGPVIAAMFIAVWDIFASS 344


>gi|209965732|ref|YP_002298647.1| hypothetical protein RC1_2451 [Rhodospirillum centenum SW]
 gi|209959198|gb|ACI99834.1| conserved hypothetical protein [Rhodospirillum centenum SW]
          Length = 362

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 87/351 (24%), Positives = 155/351 (44%), Gaps = 11/351 (3%)

Query: 5   MLNPQGIMRWM----IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M   + + R +    ++ +    +  +K F + +L A+I+ + +WP Y            
Sbjct: 1   MATDKLVERALGMAALVVLGTAIILVVKPFLSALLLAVILVYATWPAYLWVERTCGGRKN 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIP-GGMW 118
             A + T     + + P   +       +  + S +    ++G P P  WL D+P  G W
Sbjct: 61  LAAFLMTALSSLVIVAPFAIVGATLADSVGGISSGIRQIIENGPPPPPVWLGDVPLVGPW 120

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
           A   W    +  Q L       L  +GI      A   G +     L ++  +   FF Y
Sbjct: 121 AVGYWADLTAGGQDLLT-----LLRSGIRPATDLALAAGSVIGAGVLELMAAVFIAFFLY 175

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           R G  I++Q+    E         +  +    ++    G+   A+ +G++ G  + +AG+
Sbjct: 176 RGGRDIARQVAYAIERFTGPRVHHLLEVAGGTVQGVIYGILGTALAQGILAGLGFVVAGI 235

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P    LG +T ++++IP G P+ +  VS++L  +G I  A  +  WG   +  VD  LRP
Sbjct: 236 PWGPFLGFMTFVVSVIPMGPPLIWVPVSVWLATEGEIGWAVAMAAWGFFVVSSVDNVLRP 295

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           +L+     LP +  F G++GGV   G++G+FIGPVL+AL   + +E     
Sbjct: 296 YLISRGSALPLVLVFMGVLGGVLAFGVIGIFIGPVLLALGYALMREWTAQA 346


>gi|15596822|ref|NP_250316.1| hypothetical protein PA1625 [Pseudomonas aeruginosa PAO1]
 gi|9947592|gb|AAG05014.1|AE004590_5 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
          Length = 355

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 76/334 (22%), Positives = 147/334 (44%), Gaps = 8/334 (2%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
            SL+ L  F++ +  A ++ F SWP+            +  A + T+  + L  +PL++L
Sbjct: 19  ASLWVLAPFWSALFWAAVLAFASWPLMRMLTRLLGGRESLAAGLLTLGWIVLVALPLIWL 78

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIP-GGMWASELWTKHLSHPQSLKILSET 139
            +     ++ L+  +      G+P P  W++ +P  G      W        +   + + 
Sbjct: 79  GFGLADNVRSLMELLKNLQVEGLPPPPSWMAGVPLIGDRLIGWWDSIDQQGVAFFYVLKP 138

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
           ++   G   + R A   G       L ++  +I +FFFYRDG  +   +    E L    
Sbjct: 139 YVGEVGNWLLARSAKIGGG-----ILELVLSLILIFFFYRDGPRLESIVHRALERLIGNR 193

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            +    +V   ++    G+   A  + L+    + +AGVP  + LG++T   +++    P
Sbjct: 194 AEHYRDLVAGTVQRVVNGVIGTAAAQALLAWIGFMIAGVPGAMLLGLLTFACSLL-MVPP 252

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +   + +L  KG+  +   L LWG   +  VD  L+P+L+     LP +    G+ GG
Sbjct: 253 LVWGPATAWLFFKGDYGHGVFLGLWGFFIISGVDNILKPYLISRGGNLPLVVVLLGVFGG 312

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +   G +GLF+GP+L+A+   +  + I +     
Sbjct: 313 LLAFGFMGLFLGPILLAVAYNLLSDWIASTPRTP 346


>gi|237817216|ref|ZP_04596208.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
 gi|237788029|gb|EEP62245.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
          Length = 372

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 78/354 (22%), Positives = 151/354 (42%), Gaps = 5/354 (1%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  M   +     ++  + +   + L  ++  VL A+I+    +P+    +         
Sbjct: 18  RVLMSVQRASFYILLTLVTIAFAWLLIPYYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNI 77

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ-HGIPVPRWLSDIPGGMWAS 120
            A ++ +  +CL I+P+L +F   + E   L  ++          + R ++ +P      
Sbjct: 78  AAFLSVLMCICLVIIPMLAIFGSLVDEGTSLYQRLSSREFGINGYIARIMAALPES--LE 135

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E   +      +      + +   G          FG   L + +    M+  LFF +RD
Sbjct: 136 EWLKRFELGTFADWRARISSVVMQGSQLFAARLVSFGQNTLQFFIGFGIMLYLLFFLFRD 195

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  + +++      L   Y ++       VIR+T  G  IIAI +G++ G  +WL G+ +
Sbjct: 196 GADVGKKIRRAIP-LSDDYTRQFLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEA 254

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  GVI    +M+P  GA + +T  +++  + G+ ++   L + G + + +VD  LRP 
Sbjct: 255 ALLWGVIMTFCSMLPAVGAALVWTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPP 314

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           LVG   ++P        VGG+  +G+ G  IGP++ A+    W       K+  
Sbjct: 315 LVGKGTRMPDYVVLISTVGGISLIGINGFVIGPLIAAMFIAAWSLLAEEQKDQH 368


>gi|317491965|ref|ZP_07950399.1| hypothetical protein HMPREF0864_01163 [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920086|gb|EFV41411.1| hypothetical protein HMPREF0864_01163 [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 366

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 135/346 (39%), Gaps = 6/346 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A +I   +WP+     +          ++ T+ ++ L
Sbjct: 18  LFVSLMIVACLWVVRPFILGFAWASMIVIATWPVLIKLQNIFWGKRWIAVLLMTMLLLLL 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           FI+P+  +    +     ++     A    +P   WL  IP  G      W   L+   S
Sbjct: 78  FIIPIALVIGSLIDNSGPVLDWASSAKNWSVPDLLWLKSIPAVGHKLYNSWHSMLAGGGS 137

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           + I          I +    A+  G   L   L ++F  +     Y  G  ++  +    
Sbjct: 138 IIIAKIQPYIGQTITWFVAQAAHVGSFVLHCSLMLLFSAL----LYSRGEDVALGIRHFA 193

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    ++G+     L V+  I  
Sbjct: 194 IRLGSDRGDAAVVLAAQAIRAVALGVVVTALVQSVLGGIGLAISGIGYATLLTVLMFICC 253

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +   G  +      I+L   G+    T L +W    +  +D  LRP L+     LP +  
Sbjct: 254 LAQLGPLLVLVPAIIWLYWTGDTTWGTVLLVWSC-VVGTLDNFLRPALIRMGADLPMILI 312

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G++GG+   G++GLFIGPV++A+   +    +    E  + +  
Sbjct: 313 LSGVIGGLLAFGMIGLFIGPVVLAVSYRLVSAWVHEAPEPSKDVEQ 358


>gi|291617264|ref|YP_003520006.1| YdiK [Pantoea ananatis LMG 20103]
 gi|291152294|gb|ADD76878.1| YdiK [Pantoea ananatis LMG 20103]
          Length = 376

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 66/353 (18%), Positives = 143/353 (40%), Gaps = 8/353 (2%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R+  L         I+ +I   L+ ++ F      A ++   +WP+            + 
Sbjct: 16  RQIDLPQMLFTLIFILLLIAACLWVVQPFILGFAWASMVVIATWPLMLKIQRLLWGRRSL 75

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWAS 120
             ++ T+ ++ LFI+P+  L    +     +++       H +P   WL+DIP  G    
Sbjct: 76  AVIVMTILLLLLFIIPVALLVNSLIDNSAPVIAWATQG--HMLPTLNWLNDIPMVGEKLY 133

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             + K ++   +  +            F+ R      +  +   + ++F ++     Y  
Sbjct: 134 ASYQKLVAGGGAAIMAKLQPYVGRTTGFLWRRPGTLAVFMIHLAVMLLFSVL----LYWR 189

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G   +Q +      +          +  + +R+  LG+ + A+ +G++ G    ++G+P 
Sbjct: 190 GEQAAQGIRHFAWRMAGRRGDAAVLLAGQAVRAVALGVVVTALVQGVLGGIGLAVSGIPY 249

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G  +      +YL   G+    T L +W    +  +D  LRP L
Sbjct: 250 ATLLTVLMILCCLVQIGPLLVLVPAIVYLYWSGDTTWGTVLLIWSC-VVGTLDNILRPVL 308

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +     LP +    G++GG+   G++GLFIGPV++A+   +    +  +   +
Sbjct: 309 IRMGADLPLILILSGVIGGLIAFGMIGLFIGPVVLAVSYRLVSVWMHEVPAPQ 361


>gi|167839250|ref|ZP_02465977.1| hypothetical protein Bpse38_21639 [Burkholderia thailandensis
           MSMB43]
          Length = 356

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 96/325 (29%), Positives = 162/325 (49%), Gaps = 7/325 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSF--ISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A ++    WP       +      +T +A   T +V  L +VP+    
Sbjct: 35  WVIRDFVPAIAWACVVAIALWPALRRIDALPAFHGRATLVAAALTSAVALLVVVPIAAGL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-MWASELWTKHLSHPQSLKILSETFL 141
              + +  EL+  +  A Q GIP P  LS +P G   AS  W  +L+ P    +   + +
Sbjct: 95  VEAVEQSHELLGWLHRAEQTGIPAPDALSHLPFGSQQASAWWQANLAKP----LHPASAV 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
           K+     +  F   FG       +   FM++ LF  ++ G  +S  L +     F     
Sbjct: 151 KSVDGGSVVTFGRHFGSRLAHAAVLFGFMLVTLFVIFQAGPRLSGALLTGVRRAFGESGA 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            + R +   +  T  G+ ++  GEG++LG AY  AG+P    LG++TA+ AM+P  AP+ 
Sbjct: 211 ALLRRMAAAVYGTVTGLVVVGFGEGVLLGLAYAFAGLPHAALLGLVTAVAAMLPFCAPLV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G +  A  L  +GA+ +F+ +  +RP L+G   +LPFL   FG++GG  
Sbjct: 271 FGGAALWLFVQGALGWAIGLAAFGAVVVFVAEHFVRPVLIGSSARLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKESI 346
           T GLLGLF+GP LM ++ V+W E +
Sbjct: 331 TFGLLGLFVGPALMTVLTVLWAEWV 355


>gi|107101057|ref|ZP_01364975.1| hypothetical protein PaerPA_01002087 [Pseudomonas aeruginosa PACS2]
 gi|218892418|ref|YP_002441285.1| putative permease [Pseudomonas aeruginosa LESB58]
 gi|254239971|ref|ZP_04933293.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126193349|gb|EAZ57412.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218772644|emb|CAW28429.1| putative permease [Pseudomonas aeruginosa LESB58]
          Length = 355

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 76/334 (22%), Positives = 147/334 (44%), Gaps = 8/334 (2%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
            SL+ L  F++ +  A ++ F SWP+            +  A + T+  + L  +PL++L
Sbjct: 19  ASLWVLAPFWSALFWAAVLAFASWPLMRMLTRLLGGRESLAAGLLTLGWIVLVALPLIWL 78

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIP-GGMWASELWTKHLSHPQSLKILSET 139
            +     ++ L+  +      G+P P  W++ +P  G      W        +   + + 
Sbjct: 79  GFGLADNVRSLMELLKNLQVEGLPPPPSWMAGVPLIGDRLIGWWDSIDQQGVAFFYVLKP 138

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
           ++   G   + R A   G       L ++  +I +FFFYRDG  +   +    E L    
Sbjct: 139 YVGEVGNWLLARSAKIGGG-----ILELVLSLILIFFFYRDGPRLESIVHRALERLIGNR 193

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            +    +V   ++    G+   A  + L+    + +AGVP  + LG++T   +++    P
Sbjct: 194 AEHYRDLVAGTVQRVVNGVIGTAAAQALLAWIGFMIAGVPGAMLLGLLTFACSLL-MVPP 252

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +   + +L  KG+  +   L LWG   +  VD  L+P+L+     LP +    G+ GG
Sbjct: 253 LVWGPATAWLFFKGDYGHGVFLGLWGFFIISGVDNILKPYLISRGGNLPLVVVLLGVFGG 312

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +   G +GLF+GP+L+A+   +  + I +     
Sbjct: 313 LLAFGFMGLFLGPILLAVAYNLLSDWIASTPRTP 346


>gi|53716952|ref|YP_106010.1| hypothetical protein BMAA1401 [Burkholderia mallei ATCC 23344]
 gi|67643334|ref|ZP_00442081.1| putative membrane protein [Burkholderia mallei GB8 horse 4]
 gi|121597068|ref|YP_990127.1| hypothetical protein BMASAVP1_0518 [Burkholderia mallei SAVP1]
 gi|124383193|ref|YP_001023956.1| hypothetical protein BMA10229_0130 [Burkholderia mallei NCTC 10229]
 gi|126446549|ref|YP_001078668.1| hypothetical protein BMA10247_A1484 [Burkholderia mallei NCTC
           10247]
 gi|167001472|ref|ZP_02267269.1| putative membrane protein [Burkholderia mallei PRL-20]
 gi|254174598|ref|ZP_04881260.1| putative membrane protein [Burkholderia mallei ATCC 10399]
 gi|254200862|ref|ZP_04907227.1| putative membrane protein [Burkholderia mallei FMH]
 gi|254204829|ref|ZP_04911182.1| putative membrane protein [Burkholderia mallei JHU]
 gi|254356602|ref|ZP_04972877.1| putative membrane protein [Burkholderia mallei 2002721280]
 gi|52422922|gb|AAU46492.1| putative membrane protein [Burkholderia mallei ATCC 23344]
 gi|121224866|gb|ABM48397.1| putative membrane protein [Burkholderia mallei SAVP1]
 gi|124291213|gb|ABN00483.1| putative membrane protein [Burkholderia mallei NCTC 10229]
 gi|126239403|gb|ABO02515.1| putative membrane protein [Burkholderia mallei NCTC 10247]
 gi|147748474|gb|EDK55549.1| putative membrane protein [Burkholderia mallei FMH]
 gi|147754415|gb|EDK61479.1| putative membrane protein [Burkholderia mallei JHU]
 gi|148025629|gb|EDK83752.1| putative membrane protein [Burkholderia mallei 2002721280]
 gi|160695644|gb|EDP85614.1| putative membrane protein [Burkholderia mallei ATCC 10399]
 gi|238524656|gb|EEP88088.1| putative membrane protein [Burkholderia mallei GB8 horse 4]
 gi|243062780|gb|EES44966.1| putative membrane protein [Burkholderia mallei PRL-20]
          Length = 356

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 95/325 (29%), Positives = 160/325 (49%), Gaps = 7/325 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSF--ISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A ++    WP       +      +T +A + T +V  L +VP+    
Sbjct: 35  WVIRDFMPAIAWACVVAIALWPALRRIDALPALRGRATLVAAVLTSAVALLVVVPIAAGL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-MWASELWTKHLSHPQSLKILSETFL 141
              + +  EL+  +    Q GIP P  LS +P G   AS  W  +L+ P    +   T +
Sbjct: 95  VEAVDQSHELLGWLHRVEQTGIPEPDVLSHLPFGSQQASAWWLANLAKP----LHPATAV 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
           K      +  F   FG       +   FM++ LF  ++ G  +S  L +     F     
Sbjct: 151 KGVDGASVVTFGRHFGSRLAHAAVLFGFMLVTLFVIFQAGPRLSGSLLTGVRRAFGDSGA 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            + + +   +  T  G+ ++  GEG++LG AY  AG+P    LG++TAI AM+P  AP+ 
Sbjct: 211 ALLQRMAAAVYGTVTGLVVVGFGEGVLLGLAYAFAGLPHAALLGLVTAIAAMLPFCAPLV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G +  A  L  +G++ +F  +  +RP L+G   +LPFL   FG++GG  
Sbjct: 271 FGGAALWLFVQGALGWAIGLAAFGSVVVFAAEHFVRPVLIGNSARLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKESI 346
           T GLLGLF+GP LM ++ V+W E +
Sbjct: 331 TFGLLGLFVGPALMTVLTVLWAEWV 355


>gi|329296193|ref|ZP_08253529.1| putative inner membrane protein [Plautia stali symbiont]
          Length = 370

 Score =  213 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 72/360 (20%), Positives = 143/360 (39%), Gaps = 8/360 (2%)

Query: 1   MRETMLNPQGIMRWM-IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           ++  M  PQ +   M I+ +I+  L+ ++ F      A ++   +WP+            
Sbjct: 4   LQRGMDLPQMLFSLMFILLMIIACLWVVQPFILGFAWASMVVIATWPLMIRLQQLLWGRR 63

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMW 118
           +   +  T+ ++ LFI+P+  L    +     +++         +P   WL DIP  G  
Sbjct: 64  SLAVIAMTILLLLLFIIPIALLVSSLIDNSAPVIAWATQ-RHLVLPDLAWLRDIPYAGRK 122

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
               + K +    +  +            F    A  FG   L   L ++F ++     Y
Sbjct: 123 LYSSYHKLIDGGGAAIMSQVQPYIGRTTGFFVAQAGHFGRFMLHLALMLLFSVL----LY 178

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
             G  +   +      +          +  + IR+  LG+ + A+ +G++ G    ++G+
Sbjct: 179 WRGEQVGLGIRHFAYRMGGRRGDAAVLLAGQAIRAVALGVVVTALVQGVLGGIGLAISGI 238

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P    L V+  +  ++  G  I      I+L   G+    T L +W    +  +D  LRP
Sbjct: 239 PYATLLTVLMILTCLVQLGPLIVLVPAIIWLYWSGDTTWGTVLLVWSC-VVGTLDNVLRP 297

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            L+     LP +    G++GG+   G++GLFIGPV++A+   +    +       +   +
Sbjct: 298 MLIRMGADLPMILILSGVIGGLIAFGMIGLFIGPVVLAVSYRLVSVWMHEAPAPDDDPET 357


>gi|300722815|ref|YP_003712107.1| putative transport protein [Xenorhabdus nematophila ATCC 19061]
 gi|297629324|emb|CBJ89923.1| putative transport protein [Xenorhabdus nematophila ATCC 19061]
          Length = 369

 Score =  213 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 69/337 (20%), Positives = 137/337 (40%), Gaps = 6/337 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           S + L  F    + A ++   +WP+      +          I T+ ++ LF++P+  L 
Sbjct: 27  SFWVLSPFILGFIWAGMVVIATWPLLEKLQQRLWGKRWIAVSIMTLLLVLLFVLPIALLI 86

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQSLKILSETFL 141
              +     L+      +   +P   WL+ +P  G      W + ++   ++ +      
Sbjct: 87  SSVVENSAPLIEWAKSPSALQLPQLNWLNQVPVIGDNLYLKWQELIADGSNMLLNKIPPY 146

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                 +    A+  G   L   L +IF ++     Y  G  +   +      L      
Sbjct: 147 IGKTATWFFTQAANAGRFLLHLALMVIFSVL----LYWKGEQVMLSIRHFAIRLADKRGD 202

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
               +  + IR+  LG+ + A+ + +  G    +AG+P  + L V   +  +   G  + 
Sbjct: 203 SAVLLAAQSIRAVALGVVVTALVQAIAGGIGLAIAGIPYPLILTVTMFVCCVAQLGPLLV 262

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
                 +L   G+    T L +W  + L  +D  LRPFL+     LP +    G++GG+ 
Sbjct: 263 LIPSIAWLYWTGDTTWGTILAIWS-LVLTTMDGVLRPFLIRLGADLPMVLILTGVIGGIL 321

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           ++G++GLFIGPV++A+   +    +  + + + KIS 
Sbjct: 322 SLGVIGLFIGPVVLAVSFRLLLAWMNEVPKPEGKISD 358


>gi|306838115|ref|ZP_07470972.1| transmembrane protein [Brucella sp. NF 2653]
 gi|306406852|gb|EFM63074.1| transmembrane protein [Brucella sp. NF 2653]
          Length = 361

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 77/355 (21%), Positives = 151/355 (42%), Gaps = 7/355 (1%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  M   +     ++  + +   + L  ++  VL A+I+    +P+    +         
Sbjct: 7   RVLMSVQRASFYILLTLVTIAFAWLLIPYYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNI 66

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW--A 119
            A ++ +  +CL I+P+L +F   + E   L  ++         +  +++ I   +    
Sbjct: 67  AAFLSVLMCICLVIIPMLAIFGSLVDEGTSLYQRLSSRE---FDINGYIARIMAALPESL 123

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            E   +      +      + +   G          FG   L + +    M+  LFF +R
Sbjct: 124 EEWLKRFELGTFADWRARISSVVMQGSQLFAARLVSFGQNTLQFFIGFGIMLYLLFFLFR 183

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  + +++      L   Y ++       VIR+T  G  IIAI +G++ G  +WL G+ 
Sbjct: 184 DGADVGKKIRR-AIPLSDDYTRQFLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIE 242

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           + +  GVI    +M+P  GA + +T  +++  + G+ ++   L + G + + +VD  LRP
Sbjct: 243 AALLWGVIMTFCSMLPAVGAALVWTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRP 302

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            LVG   ++P        VGG+  +G+ G  IGP++ A+    W       K+  
Sbjct: 303 PLVGKGTRMPDYVVLISTVGGISLIGINGFVIGPLIAAMFIAAWSLLAEEQKDQH 357


>gi|126643157|ref|YP_001086141.1| hypothetical protein A1S_3142 [Acinetobacter baumannii ATCC 17978]
          Length = 329

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 151/314 (48%), Gaps = 8/314 (2%)

Query: 43  TSWPIYSSFISKKE-ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ 101
            +WPIY           +   A +    V+ +  VP     +    E + L   +     
Sbjct: 1   MTWPIYLRIQHFFGENRNNLNATVMISLVILIVGVPFTCAIFILQHEGRNLYFDLQRQVF 60

Query: 102 HG-IPVPRWLSDIPG-GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI 159
            G + VP ++ ++P  G   S    +  + P S       +L+++       +       
Sbjct: 61  SGHLSVPDFIRNLPFIGKEISRTLNEINTDPNSTIQNIAAWLQSH-----LSYGRVLLNE 115

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
                + + F I++LFFFYRDG +I  Q+    E +           + +  R+   G+ 
Sbjct: 116 ISKNIVKLCFAILSLFFFYRDGHTILTQVSKALEMVIGPRIHHYLDTISETTRAVVYGVG 175

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNAT 279
           + AI + ++ G +Y++AGVP+ + L + T ++A+IP G P+S+  V ++L  +G    A 
Sbjct: 176 LTAIAQAVLAGLSYFVAGVPNPMVLTIATFLLALIPFGTPVSYLGVGLWLFSQGQTMEAI 235

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
            + LWG + +   D  +RP ++ G  ++PFL   FG++GG+ + GL+GLFIGPV++A++ 
Sbjct: 236 GVILWGVLIVSSSDNVIRPLVISGATQIPFLLIMFGVLGGIASFGLVGLFIGPVILAVLL 295

Query: 340 VIWKESIMAIKENK 353
            IW+E +    + +
Sbjct: 296 AIWREWLHETIDPE 309


>gi|209516308|ref|ZP_03265165.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
 gi|209503244|gb|EEA03243.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
          Length = 364

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 98/347 (28%), Positives = 173/347 (49%), Gaps = 7/347 (2%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEESST 60
           E +   +     + + ++L++L+ ++ F   V  A ++    WP+             +T
Sbjct: 21  ERLKKQKAASAALYIGLVLLALWVVRDFIVVVAWAGVVSIALWPLLHKVAGSRWFRGRTT 80

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-MWA 119
            LA + T+ +  L ++P+       + E  EL        ++GI VP +++ +P G    
Sbjct: 81  VLATVFTLVIAVLVLLPVALGLAQALREAHELSEWFRGVQENGIAVPDFVNRLPFGVPQI 140

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           +  W  +L+ P    +     +K    + +     +FG   L   +   FM++ LF  ++
Sbjct: 141 TAWWQANLAQP----LRDSAAMKGLHSETVMTLGRQFGARALHAAMVFAFMLVTLFVIFQ 196

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G  +S  L       F      +   +   +R T  G+ ++  GEG++LG AY + GVP
Sbjct: 197 AGPRLSGSLLKAARRGFGDSGADLVEQMATAVRGTVSGLIVVGAGEGVLLGFAYLVTGVP 256

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               LG +TAI AM+P  API+F   +++LL++G++  A  L ++GAI +FI +  +RP 
Sbjct: 257 HAALLGFVTAIAAMLPFCAPITFGLAALWLLVQGSVVPAAGLAVFGAIVVFIAEHFVRPV 316

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           L+G   +LPFL   FG++GG  T GLLG+FIGP LM ++ V+W   +
Sbjct: 317 LIGNSTRLPFLLVLFGILGGAETFGLLGIFIGPALMTVLMVLWTALV 363


>gi|254234725|ref|ZP_04928048.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126166656|gb|EAZ52167.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
          Length = 355

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 76/334 (22%), Positives = 147/334 (44%), Gaps = 8/334 (2%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
            SL+ L  F++ +  A ++ F SWP+            +  A + T+  + L  +PL++L
Sbjct: 19  ASLWVLAPFWSALFWAAVLAFASWPLMRMLTRLLGGRESLAAGLLTLGWIVLVALPLIWL 78

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIP-GGMWASELWTKHLSHPQSLKILSET 139
            +     ++ L+  +      G+P P  W++ +P  G      W        +   + + 
Sbjct: 79  GFGLADNVRSLMELLKNLQVEGLPPPPSWMAGVPLIGDRLIGWWDSIDQQGVAFFYVLKP 138

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
           ++   G   + R A   G       L ++  +I +FFFYRDG  +   +    E L    
Sbjct: 139 YVGEVGNWLLARSAKIGGG-----ILELVLSLILIFFFYRDGPRLESIVHRALERLIGNR 193

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            +    +V   ++    G+   A  + L+    + +AGVP  + LG++T   +++    P
Sbjct: 194 AEHYRDLVAGTVQRVVNGVIGTAAAQALLAWIGFMIAGVPGAMLLGLLTFACSLL-MVPP 252

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +   + +L  KG+  +   L LWG   +  VD  L+P+L+     LP +    G+ GG
Sbjct: 253 LVWGPTTAWLFFKGDYGHGVFLGLWGFFIISGVDNILKPYLISRGGNLPLVVVLLGVFGG 312

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +   G +GLF+GP+L+A+   +  + I +     
Sbjct: 313 LLAFGFMGLFLGPILLAVAYNLLSDWIASTPRTP 346


>gi|293396334|ref|ZP_06640612.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
 gi|291421123|gb|EFE94374.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
          Length = 349

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 136/346 (39%), Gaps = 8/346 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
            I  +I+   + ++ F      A ++   +WP+     +      +   ++ T+ ++ LF
Sbjct: 2   FIAIMIVACFWVVQPFILGFAWASMVVIATWPLLIKLQNLLWGRRSLAVLVMTLILIVLF 61

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP--GGMWASELWTKHLSHPQS 132
           ++P+  L    +     +V+      +  IP   WL+ IP  G    S   T   S   +
Sbjct: 62  VMPIALLVNSVVDNSAPIVAWASTPGKVHIPDLAWLNSIPMIGDKVYSSYHTLINSGGGA 121

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           L    + +       F    A+  G   +   L ++F ++     Y  G  ++  +    
Sbjct: 122 LIAKVQPYFGQTATWF-AAQAAHIGRFLMHCSLMVLFSVL----LYARGEQVALGIRHFA 176

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++      + G+P+   L V+  I  
Sbjct: 177 VRLGAERGDAAVLLGGQAIRAVALGVVVTALVQSVLGAIGLAITGIPAATLLAVLMFIFC 236

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +   G         I+L   G+    T L +W    +  +D  LRP L+     LP +  
Sbjct: 237 VAQLGPLPVLIPAIIWLYWSGDTTWGTVLLVWSC-VVGTLDNFLRPVLIRMGADLPMILI 295

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G++GG+   G++GLFIGPV++A+   +    +    E    +  
Sbjct: 296 LSGVIGGLLAFGMIGLFIGPVVLAVSYRLLTAWMNEAPEPTADLDE 341


>gi|300716475|ref|YP_003741278.1| hypothetical protein EbC_18970 [Erwinia billingiae Eb661]
 gi|299062311|emb|CAX59428.1| uncharacterized protein [Erwinia billingiae Eb661]
          Length = 376

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 64/341 (18%), Positives = 136/341 (39%), Gaps = 7/341 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
            I+ +I+   + ++ F      A ++   +WP+            +   +  T+ ++ LF
Sbjct: 23  FIILMIVACFWVVQPFVLGFAWASMVVIATWPLMIKLQGLLWGRRSLAVIAMTLLLILLF 82

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
           ++P+  L    +     +++    A    +P   W++ IP  G      +   +    S 
Sbjct: 83  VLPVSVLVNSLIDSSGPVIAWA-SAGHIQLPDMHWMNSIPLVGRKLFSAYHNLVQGGGSA 141

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            +            F+   A  FG   +   L ++F ++     Y  G  +   +     
Sbjct: 142 MMTKVQPYIGRTSGFLFAQAGHFGRFMMHLGLMLLFSVL----LYARGEQVGHGIRHFAF 197

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            L          +  + IR+  LG+ + A+ +GL+ G    ++G+P    L V+  +  +
Sbjct: 198 RLASRRGDAAVLLAGQAIRAVALGVVVTALVQGLLGGIGLAISGIPYATVLTVVMILSCL 257

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +  G  +      ++L   G+    T L +W    +  +D  LRP L+     LP +   
Sbjct: 258 VQLGPLVVLIPAIVWLYWTGDTTWGTVLLIWSC-VVGTLDNVLRPMLIRMGADLPMILIL 316

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            G++GG+   G++GLFIGPV++A+   +    +      ++
Sbjct: 317 SGVIGGLIAFGMIGLFIGPVVLAVSYRLVSVWVHEAPAPED 357


>gi|187927640|ref|YP_001898127.1| hypothetical protein Rpic_0540 [Ralstonia pickettii 12J]
 gi|187724530|gb|ACD25695.1| protein of unknown function UPF0118 [Ralstonia pickettii 12J]
          Length = 349

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 70/351 (19%), Positives = 145/351 (41%), Gaps = 5/351 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           ++  + Q  +  ++  + L   + L  FF  V   +I+     P+  + +++  +     
Sbjct: 2   DSGNDHQKFLYLLLFAVTLGLCWILSPFFGAVFWGVILAILFQPVQRALVARMGKRRNLA 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWASE 121
           A++    ++ + I+P++F+    + E+     ++  A  +    +   +  +P   W  +
Sbjct: 62  ALVTLALIILIVILPVIFVAATIVQEIGVAYQEIQSAQPNYSRYLSEAVHALP--TWVQQ 119

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L  K      +               F    A   G     + +    M+  +FF  RDG
Sbjct: 120 LLAKAGLTNIAGIQKKLADGAAQISQFAATKALSIGQNTFQFVVGFGVMLYMVFFLLRDG 179

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I +++      +   + + +      V+R+T  G   +A+ +G + G  +W+ G+   
Sbjct: 180 TEIGRRVRRALP-MDEEHKRLLLSKFTTVVRATVKGNIAVALVQGALGGLIFWILGIDGV 238

Query: 242 VALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           V  G + A ++++P  GA + +  V++Y L+ G I+    L  +    + +VD  LRP L
Sbjct: 239 VLWGALMAFLSLLPAIGASLVWIPVAVYFLMVGAIWKCVILVAFCGGVIGLVDNLLRPLL 298

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           VG   K+P        +GG+   G+ G  IGP++ AL    W        E
Sbjct: 299 VGKDTKMPDWVVLISTLGGMELFGITGFVIGPLVAALFMASWDIFARGQNE 349


>gi|296535339|ref|ZP_06897542.1| protein of hypothetical function UPF0118 [Roseomonas cervicalis
           ATCC 49957]
 gi|296264338|gb|EFH10760.1| protein of hypothetical function UPF0118 [Roseomonas cervicalis
           ATCC 49957]
          Length = 357

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 91/334 (27%), Positives = 154/334 (46%), Gaps = 7/334 (2%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           +     L+ F + +L A I+ F +WP Y +   +   S    A++     M L  +PLLF
Sbjct: 27  IGCFLVLRPFLSALLWAAILAFCTWPAYRTLRDRLRLSPGLAALLMVTLEMLLVGLPLLF 86

Query: 81  LFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPG-GMWASELWTKHLSHPQSLKILSE 138
                  +++ L S V      G+P +  WL  IP  G +  E W         L  +  
Sbjct: 87  ATPIRAEDIEGLRSSVENLIASGLPGLSDWLGRIPWVGEFLRERWDALQLDFTPLTDMLR 146

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
            +        I + A    +  L     +I  I+  FFFYRDG  ++  L+ L   +  A
Sbjct: 147 PYAG-----VIAQQALGVLLAVLSGLAELILAILLSFFFYRDGPRMAAGLEGLVVRIAGA 201

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             +++ ++   V      G+   A+ +GL+ G   W++GVP    L VI  I++++P GA
Sbjct: 202 QARRLVQLTANVTTGVVYGLLGTAVAQGLMTGFGLWISGVPQPALLAVIAGIISVLPVGA 261

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P+ +   +++L  +G+      L ++GA  +  VD  +RP+L+     LP L T  G +G
Sbjct: 262 PLVWLPAALWLFSQGSTGWGLFLLVYGAGGISSVDNVIRPWLISRGADLPLLLTILGALG 321

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           GV   G LGLF+GPVL+A+   + ++      + 
Sbjct: 322 GVFAFGFLGLFLGPVLLAVGFTLLRDWAEEEPQT 355


>gi|311279418|ref|YP_003941649.1| hypothetical protein Entcl_2111 [Enterobacter cloacae SCF1]
 gi|308748613|gb|ADO48365.1| protein of unknown function UPF0118 [Enterobacter cloacae SCF1]
          Length = 374

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 70/358 (19%), Positives = 134/358 (37%), Gaps = 7/358 (1%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R   +    +    +  II+  L+ ++ F      A  I   +WP+              
Sbjct: 6   RPRDIPQILLSVLFLTLIIVACLWIVQPFILGFAWASTIVIATWPVLIRLQRILFGKRAL 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWAS 120
             ++ T+ +  LF++P+  L    +     LV  +         +P WL+ IP  G    
Sbjct: 66  AVLVMTLLLFLLFVIPIALLVNSLVDGSLPLVHAITSGELTPPDLP-WLNSIPLIGAKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    +  +            +    A+  G   L   L ++F  +     Y  
Sbjct: 125 GAWHGLLDMGGAAIMTKVKPYIGTTTTWFVGQAAHIGRFMLHCGLMLLFSAL----LYWQ 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  ++  +      L          +  + IR+  LG+ + A+ + ++ G    ++GVP 
Sbjct: 181 GEKVAWGVRYFATRLAAKRGDAAVLLAGQAIRAVALGVVVTALVQAVLGGIGLAISGVPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+     ++  G  I      I+L   G+    T L +W    +  +D  +RP L
Sbjct: 241 ATLLTVVMIFSCLVQLGPLIVLVPSIIWLYWSGDTTWGTVLLVWSC-VVGTMDNFIRPVL 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  +    +    
Sbjct: 300 IRMGADLPMILIISGVIGGLIAFGMIGLFIGPVLLAVTWRLFDTWMREVPPPSDNPEE 357


>gi|91778031|ref|YP_553239.1| hypothetical protein Bxe_B2098 [Burkholderia xenovorans LB400]
 gi|91690691|gb|ABE33889.1| Putative membrane protein [Burkholderia xenovorans LB400]
          Length = 368

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 97/343 (28%), Positives = 168/343 (48%), Gaps = 6/343 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYF-LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           ML+ + +++ M++  ILV  Y  L  F  PV  ALII + +WP+Y    +     +   A
Sbjct: 7   MLDRKRVIQAMLLAAILVLGYVVLWPFVIPVAWALIIAYVTWPLYCRLHALIRGRAWISA 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASEL 122
           ++ T+ V  +  +P+  L      E   L   V      G + VP +++ IP   W    
Sbjct: 67  LLMTLLVGVVAFIPIASLISPVFREFLALYRNVAEYAASGPLRVPDFIARIP---WLGHS 123

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             + +S           ++  +G  ++   AS  G       + + F  + LFF YRDG 
Sbjct: 124 LQQLVSEFADDPQRLHAYITQSGDRWVGELASMVGS-VGRNAVKLGFATLTLFFAYRDGR 182

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           ++  Q+  +   +           +  V RS   G+ + A+ +G + G  YW AGV + +
Sbjct: 183 ALLLQVQGVMRPVLGDRLDGYLSAIGGVTRSVVYGLALTAVVQGALAGLGYWAAGVKAPL 242

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L +IT + A+IP G P  +  V + L+  GN+F    L LWGA+ +  VD  +RP ++ 
Sbjct: 243 LLTIITTLAALIPFGTPFVWIPVGVGLIANGNMFAGVGLLLWGALVVSWVDNLIRPMVIS 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             +++PFL   FG++GG+   G +GLF+GPV++A++  +W+E 
Sbjct: 303 NAVRVPFLLILFGVLGGIGAFGFIGLFVGPVVVAILLALWREW 345


>gi|304397632|ref|ZP_07379509.1| protein of unknown function UPF0118 [Pantoea sp. aB]
 gi|304354804|gb|EFM19174.1| protein of unknown function UPF0118 [Pantoea sp. aB]
          Length = 372

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 70/350 (20%), Positives = 142/350 (40%), Gaps = 8/350 (2%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R+  L         I+ +I+  L+ ++ F      A ++   +WP+   F        + 
Sbjct: 7   RDMDLPQILFTLMFILLLIVACLWVVQPFILGFAWASMVVIATWPLMLKFQRLLWGRRSL 66

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWAS 120
             ++ T+ ++ LFI+P+  L    +     +++ V     H +P   WL +IP  G    
Sbjct: 67  AVIVMTLLLLLLFIIPIALLVSSLIDNSAPVIAWVTQG--HTMPKLTWLREIPMVGKKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             +   ++   +  +            F    A  FG   +   + ++F ++     Y  
Sbjct: 125 VSYDTLVASGGAGVMAKIQPYIGRTTGFFVAQAGHFGRFMIHLGVMLLFSVL----LYWR 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G   +Q +      +          +  + IR+  LG+ + A+ +G++ G    ++G+P 
Sbjct: 181 GEQAAQGIRHFAFRMAGRRGDAAVLLAAQSIRAVALGVVVTALVQGVLGGIGLAISGIPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G  +      IYL   G+    T L +W    +  +D  LRP L
Sbjct: 241 ATLLTVLMILCCLVQLGPLLVLVPAIIYLYWSGDTTWGTVLLVWSC-VVGTMDNVLRPML 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +     LP +    G++GG+   G++GLFIGPV++A+   +    +    
Sbjct: 300 IRMGADLPMILILSGVIGGLFAFGMIGLFIGPVVLAVSYRLVSVWVHEAP 349


>gi|94312981|ref|YP_586190.1| hypothetical protein Rmet_4053 [Cupriavidus metallidurans CH34]
 gi|93356833|gb|ABF10921.1| conserved hypothetical protein; putative inner membrane protein
           (permease) [Cupriavidus metallidurans CH34]
          Length = 361

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 74/345 (21%), Positives = 144/345 (41%), Gaps = 5/345 (1%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
              ++  + +   + L  F+  V    ++     P+     +     +   A++  + V+
Sbjct: 12  FLLLLAAVSIAFFWILLPFYGAVFWGAVLAIIFAPLQRRLTAGLRGRNNVAALLTLLLVL 71

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
            L I+PL  +    + +   L   +       G+   R +  +P   +   L  K     
Sbjct: 72  VLVILPLTIITASLINQGVSLYDSIRSGQLNFGVYFQRAVDALP--PYVRTLLAKVDLTS 129

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +      +        F+   A   G     + +S   M+  LFF  RDG  +S+++ +
Sbjct: 130 IADLQEKLSASALQASQFVATRALSIGQNTAQFVISFGIMLYLLFFLLRDGPRLSRKIRT 189

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
               L   Y + + +    V+R+T  G   +A+ +G + G  + + G+   +  GVI A 
Sbjct: 190 AVP-LSDLYKQHLIQKFTTVVRATVKGNVAVALVQGTLGGGIFAVLGIQGALLWGVIMAF 248

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++++P  GA + +  V++Y L+ G+      L  +G + + +VD  LRP LVG   ++P 
Sbjct: 249 LSLLPAVGAGLIWAPVAVYFLLTGSTVTGLVLIGFGVLVIGMVDNVLRPILVGKDTQMPD 308

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                  +GG+   GL G  IGP++ AL    W  +   I EN +
Sbjct: 309 YVVLISTLGGMALFGLNGFVIGPLIAALFIACWDLNAHGIDENGD 353


>gi|82701870|ref|YP_411436.1| hypothetical protein Nmul_A0737 [Nitrosospira multiformis ATCC
           25196]
 gi|82409935|gb|ABB74044.1| Protein of unknown function UPF0118 [Nitrosospira multiformis ATCC
           25196]
          Length = 356

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 78/353 (22%), Positives = 152/353 (43%), Gaps = 6/353 (1%)

Query: 5   MLNPQGIMRWMIMFIILVS---LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           M +P+   +  ++ +I VS   ++ L  F+  V  A ++     P +    +   +    
Sbjct: 1   MNSPELRQKAFLLMLIAVSVAFIWILLPFYGTVFWAAVLAIIFTPFHRKLQAALGQHRNL 60

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A    + ++ + I+P+  +    + E   +  K+     +     + ++        + 
Sbjct: 61  AAFTTLLLILVIVILPVTLMTISLLQEGTIVYQKIRSGELNFGMYFQQIASASPPWLVNL 120

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L    L++   L+ +  + +   G  F+   A   G    ++ +S   M+  LFF  RDG
Sbjct: 121 LDRSGLTNMAELQDMLSSGV-LRGSQFVATHALSLGQNAFEFLVSFGIMLYLLFFLLRDG 179

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            +++ ++      L   + + +S     VIR+T  G   +A  +G + G  ++  G+   
Sbjct: 180 DNLAAKIKQ-AMPLTMEHKRHLSSKFTTVIRATVKGNVAVAAIQGALGGVVFYFLGIQGA 238

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +  G + A +++IP  GA + +  V+IY L  G ++  T L  +G   + +VD  LRP L
Sbjct: 239 LLWGFMMAFLSLIPAVGAGLIWIPVAIYFLFTGAVWQGTVLIAFGVFVIGLVDNLLRPVL 298

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           VG   K+P        +GG+   GL G  IGPV+ AL    W     A+   +
Sbjct: 299 VGRDTKMPDYVVLISTLGGLVLFGLNGFVIGPVIAALFMSAWDLFAAAMDTPR 351


>gi|256828705|ref|YP_003157433.1| protein of unknown function UPF0118 [Desulfomicrobium baculatum DSM
           4028]
 gi|256577881|gb|ACU89017.1| protein of unknown function UPF0118 [Desulfomicrobium baculatum DSM
           4028]
          Length = 365

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 134/331 (40%), Gaps = 5/331 (1%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
            F+  +  A IIG    P+Y   +   +      A+   +    + I+P LF+      E
Sbjct: 37  PFWGAIFWACIIGLIFSPMYQRLLRMGKPKPNLAALGTLLICFVIGIIPSLFVIISFFRE 96

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
              L +++             +            + +      S++     F  T+   +
Sbjct: 97  GASLYNRLKSGEFDIADRIDKVQT--AFPSIKNFFDRFDLDINSIQAQLSDFALTS-SGY 153

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           I + A   G   L + +++  M+   FF  RDG  +   L      L       +     
Sbjct: 154 IAQNALALGQGTLQFFVALGLMLYMAFFMLRDGDKLVATLVRALP-LGNEREYLLFNKFA 212

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSI 267
           +V+R+T  G  ++A  +G++ G  +W+  +   +  GV+  ++++IP  GA + +  V+I
Sbjct: 213 EVVRATVKGNLLVAAVQGILGGFIFWVLDIHGALLWGVVMTLLSLIPVIGAGLIWGPVAI 272

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           YL   G + +   L  +GA  + + D  LRP LVG   KLP        +GG    G+ G
Sbjct: 273 YLFAIGELSHGVILVAYGAGVIGLADNILRPLLVGRDTKLPDYIVLLSTLGGFSLFGMNG 332

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             +GP++ AL    W+  I     +K   +S
Sbjct: 333 FVLGPLVAALFIAFWEIFIREFNTSKSGNAS 363


>gi|156935110|ref|YP_001439026.1| hypothetical protein ESA_02961 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533364|gb|ABU78190.1| hypothetical protein ESA_02961 [Cronobacter sakazakii ATCC BAA-894]
          Length = 362

 Score =  212 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 74/353 (20%), Positives = 145/353 (41%), Gaps = 6/353 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           M + +    + I+ + +VS+ F   +K + + VL A+I+    +PI           +  
Sbjct: 1   MNSKEMSRAFFILILFIVSILFFNLVKPYLSAVLWAVILAVIFYPIKRRLCHMMNGRNNI 60

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            +++  V +  L  VPL  +    + E   + S V   N     +   +  I    WA  
Sbjct: 61  ASLLTVVLICLLVFVPLAVVASSLVSEFNAVYSDVQANNTTLPTLLADVVRILP-DWAQR 119

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +  ++     +      + +   G  ++               +    M+  LFF  +DG
Sbjct: 120 MLAENQLDNAAAIQQKISGVALKGSQYVAGSIFLISRNTFSVVIGFGIMLYLLFFLLKDG 179

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   + S    L     +++ R    V R+T  G  ++A+ +G++ G A++ AG+ + 
Sbjct: 180 SRLVSVVLSAVP-LSDKVKQRLFRRFAAVARATVKGTVVVAVVQGILGGVAFYFAGIGAS 238

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +  G + A ++++P  GA + +    IYL   G I  A  L  +  + + + D  LRP L
Sbjct: 239 ILWGSLMAFLSLVPAVGAALIWVPAVIYLFTTGAIIKAVLLTAFFVVVVGLADNLLRPLL 298

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           VG  I++P        +GG+   G+ G  +GP++ AL    W          +
Sbjct: 299 VGKDIRMPDWLILLSTLGGLEVYGINGFVVGPLIAALFVTCWNTFSAGPGRTR 351


>gi|307727746|ref|YP_003910959.1| hypothetical protein BC1003_5755 [Burkholderia sp. CCGE1003]
 gi|307588271|gb|ADN61668.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1003]
          Length = 369

 Score =  212 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 91/347 (26%), Positives = 174/347 (50%), Gaps = 5/347 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEESST 60
           E +   +     + + ++L++L+ ++ F   V  A ++    WP+             +T
Sbjct: 26  ERVKKQKAASLALYIGLVLLALWVVRDFLPVVGWAGVLAIALWPLLRKVEGSRWLSGRTT 85

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            +A   T+++  L ++P+       + E  +L      A ++GI +P ++  +P G+  +
Sbjct: 86  LIAAALTLAIALLVVLPVGVGIAQALREAHDLSEWFKAAQENGIAMPDFIHRLPFGVQQA 145

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E W +    P    +     +K      +      FG   +       FM++ LF  ++ 
Sbjct: 146 EAWWQAYLAP---PLRDSAAMKGLHSTTVVTLGRHFGARAVHAVTVFAFMLVTLFVIFQA 202

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +S  L    +  F     ++ + +   +R T  G+ ++ +GEG +LG AY++ G+P 
Sbjct: 203 GPRLSGALARGLQRGFGEDGAQLVQRMATAVRGTVSGLVVVGLGEGALLGVAYFVTGLPH 262

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L +IT+I AM+P  API+F+  +++L  +G++  A  L ++G+I +F+ +  +RP L
Sbjct: 263 VALLALITSIAAMLPFCAPITFSLAALWLFSQGSVAGAIGLLVFGSIVVFVAEHFVRPVL 322

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           +G   +LPFL   FG++GG  T GLLGLFIGP LM ++ V+W + + 
Sbjct: 323 IGNSTRLPFLLVLFGILGGAETFGLLGLFIGPALMTVLMVLWTDLVQ 369


>gi|296159881|ref|ZP_06842702.1| protein of unknown function UPF0118 [Burkholderia sp. Ch1-1]
 gi|295889864|gb|EFG69661.1| protein of unknown function UPF0118 [Burkholderia sp. Ch1-1]
          Length = 360

 Score =  212 bits (540), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 93/346 (26%), Positives = 174/346 (50%), Gaps = 7/346 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEESSTFL 62
           +   +     + + ++L++L+ ++ F A V  A +I    WP+             +T +
Sbjct: 19  LKKQKTASLALYIGLVLLALWVVRDFIAVVAWAGVIAIALWPLLRKVEGNRWFTGRTTLI 78

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-MWASE 121
           A + T+ +  L ++P+       + E  +L      A ++GIP+P ++  +P G    S 
Sbjct: 79  AAVLTLLIALLVVLPVGIGIAQALREAHDLNEWFKTAQENGIPLPDFIQRLPFGVQQISA 138

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            W  +L+ P    +     +K      +      FG   +       FM++ LF  ++ G
Sbjct: 139 WWQANLTQP----LRESAAMKGLHSPAVVTLGRHFGARAVHAVTVFAFMLVTLFVIFQAG 194

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +S  L       F     ++ + +   +R T  G+ ++ +GEG +LG AY++ G+P  
Sbjct: 195 PRLSGALLKGMRRGFGDDGAQLLQRMAAAVRGTVSGLVVVGLGEGALLGVAYFVTGLPHV 254

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             L  +TAI AM+P  AP++F   +++LL++G++  A  L ++G++ +FI +  +RP L+
Sbjct: 255 ALLAFVTAIAAMLPFCAPLTFGIAALWLLLQGSVAAAIGLAVFGSVVVFIAEHFVRPVLI 314

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           G   +LPFL   FG++GG  T GLLG+FIGP LM ++ V+W + + 
Sbjct: 315 GNSTRLPFLLVLFGILGGAETFGLLGIFIGPALMTVLMVLWTDLVQ 360


>gi|292488148|ref|YP_003531029.1| hypothetical protein EAMY_1671 [Erwinia amylovora CFBP1430]
 gi|292899359|ref|YP_003538728.1| membrane protein [Erwinia amylovora ATCC 49946]
 gi|291199207|emb|CBJ46322.1| putative membrane protein [Erwinia amylovora ATCC 49946]
 gi|291553576|emb|CBA20621.1| UPF0118 inner membrane protein ydiK [Erwinia amylovora CFBP1430]
 gi|312172286|emb|CBX80543.1| UPF0118 inner membrane protein ydiK [Erwinia amylovora ATCC
           BAA-2158]
          Length = 374

 Score =  212 bits (540), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 67/352 (19%), Positives = 131/352 (37%), Gaps = 7/352 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L         I   I+   + ++ F      A ++   +WP+                + 
Sbjct: 10  LAQIVFSLLFISLTIVACFWIVQPFILGFAWASMVVIATWPLMIKIQRLLWGRRALAVIT 69

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWT 124
            T+ ++ +FI+P+  L    +     +++ +       +P   WL   P  G      + 
Sbjct: 70  MTLLLILVFIIPVALLVNSLIENSAPMIAWLGSG-HLQMPDLHWLRSTPLVGRKLYSAYH 128

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
              +   S  +            F    A  FG   +   L ++F ++     Y  G  +
Sbjct: 129 NLFAGGGSALLAQVQPYIGRTTGFFFAQAGHFGRFMMHLGLMLLFSVL----LYWRGEQV 184

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            Q +      L          +  + IR+  LG+ + A+ +G++ G    ++G+P    L
Sbjct: 185 GQGIRHFAFRLASRRGDAAVLLAAQAIRAVALGVVVTALVQGVLGGIGLAISGIPFATIL 244

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            V+  +  ++  G  I      I+L   G+    T L +W    +  +D  LRP L+   
Sbjct: 245 TVLMILSCLVQLGPLIVLVPAIIWLYWSGDTTWGTVLLIWSC-VVGTLDNVLRPMLIRMG 303

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
             LP +    G++GG+   G++GLFIGPV++A+   +    +       E  
Sbjct: 304 ADLPMILILSGVIGGLVAFGMIGLFIGPVVLAISYRLVSVWVHETPAPHENP 355


>gi|189022920|ref|YP_001932661.1| hypothetical protein BAbS19_II07200 [Brucella abortus S19]
 gi|189021494|gb|ACD74215.1| hypothetical protein BAbS19_II07200 [Brucella abortus S19]
          Length = 361

 Score =  212 bits (540), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 78/354 (22%), Positives = 151/354 (42%), Gaps = 5/354 (1%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  M   +     ++  + +   + L  ++  VL A+I+    +P+    +         
Sbjct: 7   RVLMSVQRASFYILLTLVTIAFAWLLIPYYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNI 66

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ-HGIPVPRWLSDIPGGMWAS 120
            A ++ +  +CL I+P+L +F   + E   L  ++          + R ++ +P      
Sbjct: 67  AAFLSVLMCICLVIIPMLAIFGSLVDEGTSLYQRLSSREFGINGYIARIMAALPES--LE 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E   +      +      + +   G          FG   L + +    M+  LFF +RD
Sbjct: 125 EWLKRFELGTFADWRARISSVVMQGSQLFAARLVSFGQNTLQFFIGFGIMLYLLFFLFRD 184

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  + +++      L   Y ++       VIR+T  G  IIAI +G++ G  +WL G+ +
Sbjct: 185 GADVGKKIRR-AIPLSDDYTRQFLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEA 243

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  GVI    +M+P  GA + +T  +++  + G+ ++   L + G + + +VD  LRP 
Sbjct: 244 ALLWGVIMTFCSMLPAVGAALVWTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPP 303

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           LVG   ++P        VGG+  +G+ G  IGP++ A+    W       K+  
Sbjct: 304 LVGKGTRMPDYVVLISTVGGISLIGINGFVIGPLIAAMFIAAWSLLAEEQKDQH 357


>gi|330428771|gb|AEC20105.1| hypothetical protein PT7_1565 [Pusillimonas sp. T7-7]
          Length = 353

 Score =  212 bits (539), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 79/355 (22%), Positives = 153/355 (43%), Gaps = 6/355 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSL---YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           M N     R  ++ +  VS+   + L  ++  +    I+     P+  S + K       
Sbjct: 1   MDNSNLYFRSFLLLLAAVSIAFIWILLPYYGAIFWGAILAIIFMPLNRSLLGKMRGRRNL 60

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A+   + ++ + I+P++ +    + E   +  ++     +       + +         
Sbjct: 61  AALATLLIIILIVIIPMILITASLLQEGASVYQRISSGQLNLGAYFEQIMNALPESVHDV 120

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    +    SL+    + +   G  ++   A   G     + +S+  M+  LFF  RDG
Sbjct: 121 MMRFGVGDVFSLREKLSS-MALEGSKYLASQAVNVGQNTFQFLISMGIMLYLLFFLLRDG 179

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            S+++    L   L   + + + R    V+R+T  G  ++A  +G + G  +W  G+   
Sbjct: 180 GSLARHSKHLIP-LSEEHKQHLFRKFATVVRATVKGNIVVAATQGTLGGLMFWFLGIQGA 238

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +  GV+ A ++++P  GA I +  V++Y L+ G ++    L L+G + + +VD  LRP L
Sbjct: 239 LLWGVLMAFLSLLPAVGAAIIWVPVAVYFLVTGAVWQGVTLTLFGVLVIGLVDNILRPLL 298

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           VG   K+P        +GG+   GL G  IGP+  AL    W     AI+ N E+
Sbjct: 299 VGKDTKIPDYVILVSTLGGLAVFGLNGFVIGPLFAALFIACWDLFPSAIRMNHEE 353


>gi|146311402|ref|YP_001176476.1| putative inner membrane protein [Enterobacter sp. 638]
 gi|145318278|gb|ABP60425.1| protein of unknown function UPF0118 [Enterobacter sp. 638]
          Length = 371

 Score =  212 bits (539), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 69/359 (19%), Positives = 141/359 (39%), Gaps = 8/359 (2%)

Query: 1   MRETMLNPQGIMRWMIM-FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           +R+     Q ++  + +  II+  L+ ++ F      A  +   +WP++           
Sbjct: 4   LRQPRDVAQILLSVLFLAIIIIACLWIVRPFVLGFAWAGTVVIATWPLFIRLQKLLFGRR 63

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMW 118
           +   V+ T+ +  +FI+P+  L    +     ++  V  + +  IP   WL+ +P  G  
Sbjct: 64  SLAVVVMTLFLFLVFIIPIALLVNSLVDTSGPVIRSV-TSGEMTIPDLAWLNSVPVIGAK 122

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
               W   L    S  +            +    A+  G   +   L ++F  +     Y
Sbjct: 123 LYSGWHSLLEMGGSAIMTKVRPYIGTTTTWFVGQAAHVGRFVMHCALMLVFSAL----LY 178

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
             G  ++  +      L          +  + +R+  LG+ + A+ + ++ G    ++GV
Sbjct: 179 WRGEQVALGVRHFATRLAGQRGDAAVLLAGQAVRAVALGVVVTALVQAVLGGIGLAISGV 238

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P      VI  +  ++  G  +      I+L   G+    T L +W    +  +D  +RP
Sbjct: 239 PYATIFTVIMILTCLVQLGPLLVLIPCIIWLYWSGDTTWGTVLLVWSC-VVGTMDNVIRP 297

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
            L+     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  I        
Sbjct: 298 MLIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEIPPPATDPD 356


>gi|226943150|ref|YP_002798223.1| hypothetical protein Avin_10160 [Azotobacter vinelandii DJ]
 gi|226718077|gb|ACO77248.1| conserved hypothetical protein [Azotobacter vinelandii DJ]
          Length = 364

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 81/331 (24%), Positives = 153/331 (46%), Gaps = 7/331 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + L  F + +  A ++ F SWP+     ++     +  A + T   + L  VPLL   + 
Sbjct: 22  WVLLPFASALFWAAVLAFASWPLMRLLTARLNGRESVAAGLLTAGWVILVAVPLLLFGFN 81

Query: 85  GMLEMKELVSKVVLANQHGIPVP-RWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLK 142
            +  ++EL   +      G+P P  WL+ +P  G    +LW        +L    + +L 
Sbjct: 82  LVDYIRELTGLINTLRLEGLPPPPEWLAGMPLFGDELVDLWRTVDQQGLALFATLKPYLG 141

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
             G   + R A   G +     L +   ++ +FFFYRDG  + + + SL   L     + 
Sbjct: 142 QVGNWLLARSAKLAGGM-----LELALSLVLVFFFYRDGPRLERFVQSLLTRLIGERAEH 196

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
              +V   ++    G+   A  +  +    +W+AGVP  + LG++T  +++IP G P+++
Sbjct: 197 YLELVAATVQRVVNGVIGTAAAQSALALIGFWIAGVPGALLLGLLTFALSLIPMGPPLAW 256

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              + +L+ +G+   A  L +WG   +  VD  L+P+L+     LP +    G+ GG+  
Sbjct: 257 IPATAWLVWQGDYGYAIFLGIWGMFVISGVDNVLKPYLISRGGNLPLVVVLLGVFGGIYA 316

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            G +GLF+GP L+A+   +  + +   +  +
Sbjct: 317 FGFMGLFLGPTLLAVAYSLLSDWVSEARPAE 347


>gi|121594188|ref|YP_986084.1| hypothetical protein Ajs_1821 [Acidovorax sp. JS42]
 gi|120606268|gb|ABM42008.1| protein of unknown function UPF0118 [Acidovorax sp. JS42]
          Length = 381

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 73/334 (21%), Positives = 132/334 (39%), Gaps = 5/334 (1%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
                L      +   +++     P++     +        A+      + + I+P+  +
Sbjct: 50  AFGAILWPLNGAIFWGVVLAILFTPLHRRLQRRMPRRRNLAALATLGVCLVIVILPVTLI 109

Query: 82  FYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
               + E      +        G  + + L+ +P   W  EL  +     ++      T 
Sbjct: 110 GASLVQEASVAYERARSGQLNFGAYLQQVLAALP--PWMLELLDRFHLTTRAELQARLTT 167

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           +      F+   A   G   L + +S   M+  LFF  RDG  ++ ++      L   + 
Sbjct: 168 IGAQASQFLATKALDVGQNTLQFVVSFGVMLYLLFFLLRDGARLAARIREAIP-LDARHK 226

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAP 259
           ++++     VIR+T  G  ++A  +G + G  +WL  +   V  GV+ A ++++P  GA 
Sbjct: 227 EQLAIKFTTVIRATVKGNIVVAAAQGALGGLIFWLLNIQGPVMWGVLMAFLSLLPAVGAS 286

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +  V+IY L  G    A  L  +G   + +VD  LRP LVG   KLP        +GG
Sbjct: 287 LIWGPVAIYFLATGAPGQAVILTAYGVFVIGLVDNVLRPVLVGKDTKLPDYVVLISTLGG 346

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +   GL G  IGP++ AL    W          +
Sbjct: 347 MALFGLTGFVIGPMIAALFIATWDLFAPHDGAER 380


>gi|298291255|ref|YP_003693194.1| hypothetical protein Snov_1260 [Starkeya novella DSM 506]
 gi|296927766|gb|ADH88575.1| protein of unknown function UPF0118 [Starkeya novella DSM 506]
          Length = 370

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 72/330 (21%), Positives = 142/330 (43%), Gaps = 3/330 (0%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +++ +    L+ L  ++  +L A+I+     P+     ++        A ++ ++ +C+
Sbjct: 33  VLVIGVTAAFLWLLLPYYGAILWAVILAILFDPLRRRLEARLGGCRNLAAALSVLACICI 92

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            ++P   +      E   L +++         +   +             T +L     +
Sbjct: 93  VVIPGAAILASLAQEAASLYNRINTREFDLATLLGEIQGALPPFVEKAFATLNLGDFVEI 152

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           +    +FL       +   A   G     + +S+  M+  LFF +RDG  ++  +     
Sbjct: 153 RTRLTSFLMY-ASQEVATRALSIGQNTAQFFVSLGVMLYLLFFLFRDGRLLANLIRKASP 211

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            L   +   I      V+ +T  G  IIA  +G + G A+W+ G+ + +  GV+ A +++
Sbjct: 212 -LSGRHTDHILEKFSSVVAATVKGNIIIAAIQGGIGGIAFWMLGIQAALLWGVLMAFLSL 270

Query: 254 IPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +P  GA + +  V++Y L+  + F    LF  G + +  VD  LRP LVG   +LP    
Sbjct: 271 LPAIGAALVWVPVAVYFLLAADYFRGVVLFAVGVLVISTVDNLLRPPLVGRGTRLPDYVV 330

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
               VGG+  +G+ G  IGP++ AL   +W
Sbjct: 331 LISTVGGLSVIGMNGFVIGPLIAALFIAVW 360


>gi|270261590|ref|ZP_06189863.1| putative inner membrane protein [Serratia odorifera 4Rx13]
 gi|270045074|gb|EFA18165.1| putative inner membrane protein [Serratia odorifera 4Rx13]
          Length = 366

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 70/347 (20%), Positives = 140/347 (40%), Gaps = 8/347 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             I+ +I+   + ++ F      A ++   +WP+            +   ++ T+ ++ L
Sbjct: 18  LFIVIMIVACFWVIQPFILGFAWAGMVVIATWPLLIKLQKLLWGRRSLAVLVMTLLLILL 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP--GGMWASELWTKHLSHPQ 131
           FI+P+  L    +     +V+      +  IP   WL  IP  G    +   T   +   
Sbjct: 78  FILPISLLVSSVVDNSAPVVAWASTPGKLHIPDLAWLQSIPMIGNKVYNSYHTLVNAGGA 137

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +L    + +       F+ + A+  G   L   L ++F ++     Y  G  ++  +   
Sbjct: 138 ALLAKIQPYFGQTATWFVAQ-AAHIGRFLLHCTLMLLFSVL----LYARGEQVALGIRHF 192

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L          +  + IR+  LG+ + A+ + ++ G    ++G+P+   L V+  I 
Sbjct: 193 AARLAAERGDAAVVLGGQAIRAVALGVVVTALVQSVLGGIGLAVSGIPAATLLTVLIFIC 252

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +   G  +      I+L   G+    T L +W    +  +D  LRP L+     LP L 
Sbjct: 253 CVAQLGPLLVLVPAIIWLYWSGDTTWGTVLLVWSC-VVATLDNVLRPVLIRMGADLPMLL 311

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
              G++GG+   G++GLFIGPV++A+   +    +    E    +  
Sbjct: 312 ILSGVIGGLLAFGMIGLFIGPVVLAVSYRLLTAWMDEAPEPTADLDE 358


>gi|260597659|ref|YP_003210230.1| putative inner membrane protein [Cronobacter turicensis z3032]
 gi|260216836|emb|CBA30340.1| UPF0118 inner membrane protein ydiK [Cronobacter turicensis z3032]
          Length = 375

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 74/361 (20%), Positives = 151/361 (41%), Gaps = 10/361 (2%)

Query: 1   MRETMLNPQGIMRWMIM-FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           +R+ M  PQ ++  + +  +I+  L+ ++ F      A  +   +WP+            
Sbjct: 7   LRQPMDVPQILLSVLFLSVMIIACLWIVQPFILGFAWAGTVVIATWPLLLRLQKMLWGRR 66

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
           +   ++  + ++ LF++P+  L    +      +  +  + Q  IP   WL  IP     
Sbjct: 67  SLAVLVMVLILIMLFVIPVALLVNSLVDSSGPFIHWL-TSGQMTIPDLAWLHSIPYIGDK 125

Query: 120 SELWTKHL--SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
             L   +L  S   ++      +L T    FI + A+  G + +   L ++F  +     
Sbjct: 126 LYLGWHNLVESGGSAIMAKVRPYLGTTTGWFIGQ-AAHLGRLLMHCGLMLLFSAL----L 180

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
           Y  G  ++  +      L          +  + IR+  LG+ + A+ +G++ G    ++G
Sbjct: 181 YWRGEQVALGIRHFAIRLASKRGDAAVVLAGQAIRAVALGVVVTALVQGVLGGIGLAISG 240

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           +P    L V+  +  ++  G         I+L   G+    T L +W A  +  +D  +R
Sbjct: 241 IPYATLLTVVMILSCLVQLGPLPVLVPAIIWLYWSGDATWGTVLLVWSA-VVGTLDNIIR 299

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           P L+     LP +    G++GG+   G++GLFIGPVL+A+   ++   +      +E   
Sbjct: 300 PMLIRMGADLPMVLILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFSVWVSEAPLPEENSK 359

Query: 358 S 358
           +
Sbjct: 360 T 360


>gi|254712287|ref|ZP_05174098.1| hypothetical protein BcetM6_02689 [Brucella ceti M644/93/1]
 gi|254715358|ref|ZP_05177169.1| hypothetical protein BcetM_02704 [Brucella ceti M13/05/1]
          Length = 352

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 76/352 (21%), Positives = 150/352 (42%), Gaps = 7/352 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     ++  + +   + L  ++  VL A+I+    +P+    +          A 
Sbjct: 1   MSVQRASFYILLTLVTIAFAWLLIPYYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAF 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW--ASEL 122
           ++ +  +CL I+P+L +F   + E   L  ++         +  +++ I   +     E 
Sbjct: 61  LSVLMCICLVIIPMLAVFGSLVDEGTSLYQRLSSRE---FDINGYIARIMAALPESLEEW 117

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             +      +      + +   G          FG   L + +    M+  LFF +RDG 
Sbjct: 118 LKRFELGTFADWRARISSVVMQGSQLFAARLVSFGQNTLQFFIGFGIMLYLLFFLFRDGA 177

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + +++      L   Y ++       VIR+T  G  IIAI +G++ G  +WL G+ + +
Sbjct: 178 DVGKKIRR-AIPLSDDYTRQFLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAAL 236

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             GVI    +M+P  GA + +T  +++  + G+ ++   L + G + + +VD  LRP LV
Sbjct: 237 LWGVIMTFCSMLPAVGAALVWTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLV 296

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G   ++P        VGG+  +G+ G  IGP++ A+    W       K+  
Sbjct: 297 GKGTRMPDYVVLISTVGGISLIGINGFVIGPLIAAMFIAAWSLLAEEQKDQH 348


>gi|23500209|ref|NP_699649.1| hypothetical protein BRA0460 [Brucella suis 1330]
 gi|161620528|ref|YP_001594414.1| hypothetical protein BCAN_B0462 [Brucella canis ATCC 23365]
 gi|254699715|ref|ZP_05161543.1| hypothetical protein Bsuib55_02471 [Brucella suis bv. 5 str. 513]
 gi|254702852|ref|ZP_05164680.1| hypothetical protein Bsuib36_02714 [Brucella suis bv. 3 str. 686]
 gi|254706027|ref|ZP_05167855.1| hypothetical protein BpinM_03248 [Brucella pinnipedialis
           M163/99/10]
 gi|254720517|ref|ZP_05182328.1| hypothetical protein Bru83_13551 [Brucella sp. 83/13]
 gi|256015243|ref|YP_003105252.1| hypothetical protein BMI_II457 [Brucella microti CCM 4915]
 gi|256029693|ref|ZP_05443307.1| hypothetical protein BpinM2_03388 [Brucella pinnipedialis
           M292/94/1]
 gi|256157846|ref|ZP_05455764.1| hypothetical protein BcetM4_03193 [Brucella ceti M490/95/1]
 gi|256253192|ref|ZP_05458728.1| hypothetical protein BcetB_02609 [Brucella ceti B1/94]
 gi|260167217|ref|ZP_05754028.1| hypothetical protein BruF5_02324 [Brucella sp. F5/99]
 gi|23463812|gb|AAN33654.1| membrane protein, putative [Brucella suis 1330]
 gi|161337339|gb|ABX63643.1| Hypothetical protein BCAN_B0462 [Brucella canis ATCC 23365]
 gi|255997903|gb|ACU49590.1| hypothetical protein BMI_II457 [Brucella microti CCM 4915]
          Length = 352

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 76/352 (21%), Positives = 150/352 (42%), Gaps = 7/352 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     ++  + +   + L  ++  VL A+I+    +P+    +          A 
Sbjct: 1   MSVQRASFYILLTLVTIAFAWLLIPYYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAF 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW--ASEL 122
           ++ +  +CL I+P+L +F   + E   L  ++         +  +++ I   +     E 
Sbjct: 61  LSVLMCICLVIIPMLAIFGSLVDEGTSLYQRLSSRE---FDINGYIARIMAALPESLEEW 117

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             +      +      + +   G          FG   L + +    M+  LFF +RDG 
Sbjct: 118 LKRFELGTFADWRARISSVVMQGSQLFAARLVSFGQNTLQFFIGFGIMLYLLFFLFRDGA 177

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + +++      L   Y ++       VIR+T  G  IIAI +G++ G  +WL G+ + +
Sbjct: 178 DVGKKIRRAIP-LSDDYTRQFLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAAL 236

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             GVI    +M+P  GA + +T  +++  + G+ ++   L + G + + +VD  LRP LV
Sbjct: 237 LWGVIMTFCSMLPAVGAALVWTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLV 296

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G   ++P        VGG+  +G+ G  IGP++ A+    W       K+  
Sbjct: 297 GKGTRMPDYVVLISTVGGISLIGINGFVIGPLIAAMFIAAWSLLAEEQKDQH 348


>gi|251789301|ref|YP_003004022.1| putative inner membrane protein [Dickeya zeae Ech1591]
 gi|247537922|gb|ACT06543.1| protein of unknown function UPF0118 [Dickeya zeae Ech1591]
          Length = 370

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 67/340 (19%), Positives = 128/340 (37%), Gaps = 6/340 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             I  +I+   + ++ F      A ++   +WP+            +   ++ T+ ++ L
Sbjct: 19  LFIGILIIACFWVVQPFILGFAWASMVVIATWPLLIRLQQMLWGYRSLAVIVMTLLLVLL 78

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           F+ P   L    +     L+S +    +   P   WL  IP  G      W         
Sbjct: 79  FVFPTSILVSSVIDNASNLISWISAQGRLSPPELDWLQSIPLVGAKLHSSWHSLAHSGGP 138

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            ++   A+  G   +   L ++F ++     Y  G  ++  +    
Sbjct: 139 ALMAKIQPYIGQTASWVVSQAAHIGRFLMHCALMVLFSVL----LYSKGDQVALGVRRFA 194

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + AI + ++ G    LAG+P    L V+  +  
Sbjct: 195 IRLGRQGGDSAVILAAQAIRAVALGVVVTAIVQSVLGGIGLALAGIPYTTLLTVLMFLSC 254

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +   G         I+L   G+    T L +W    +  +D  +RP L+     LP L  
Sbjct: 255 VAQLGPLTVLIPAIIWLYWSGDTTWGTILLIWSC-VVGTLDNIIRPLLIRMGADLPMLLI 313

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             G++GG+   G++GLFIGPV++A+   +    +    E 
Sbjct: 314 LSGVIGGLLAFGMIGLFIGPVVLAVSYRLLSAWMKESPEP 353


>gi|323968456|gb|EGB63862.1| ydiK protein [Escherichia coli M863]
 gi|327252805|gb|EGE64459.1| hypothetical protein ECSTEC7V_2050 [Escherichia coli STEC_7v]
          Length = 370

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 66/346 (19%), Positives = 137/346 (39%), Gaps = 7/346 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +
Sbjct: 18  LFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMV 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQS 132
           FI+P+  L    +     L+ K + +    +P   WL+ IP  G      W   L    +
Sbjct: 78  FIIPIALLVNSIVDGSGPLI-KAISSGDMTLPDLAWLNTIPVIGTKLYAGWHNLLDMGGT 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  ++Q +    
Sbjct: 137 AIMAKVRPYIGTTTTWFVGQAAHIGRFMVHCALMLLFSAL----LYWRGEQVAQGIRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  
Sbjct: 193 TRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G+    T L +W    +  +D  +RP L+     LP +  
Sbjct: 253 LVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSG-VVGTLDNVIRPMLIRMGADLPLILI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G++GG+   G++GLFIGPVL+A+   ++   +  +    ++   
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQPEE 357


>gi|91775579|ref|YP_545335.1| hypothetical protein Mfla_1226 [Methylobacillus flagellatus KT]
 gi|91709566|gb|ABE49494.1| protein of unknown function UPF0118 [Methylobacillus flagellatus
           KT]
          Length = 352

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 79/341 (23%), Positives = 143/341 (41%), Gaps = 3/341 (0%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           ++++ +    +  L  F+  V   +I+     P+Y   +          A+    + + +
Sbjct: 13  FLLLLVSAGLIIILLPFYGAVFWGVILSILFTPLYRRLLVTTRNRKNLAALGTLSACIII 72

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            IVP++ +    + E   L  K+     +     + + D         L    LS  QS 
Sbjct: 73  VIVPVIIIASSLVHEGTMLFQKIKTGQINPALYTQQILDATPAPVHRILERVGLSDVQSF 132

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           +      L   G   +   A   G     + +    M+  +FF  RDG S+S ++     
Sbjct: 133 QEKLSQ-LAMEGSQLLATKALSIGQNTFQFVVGFAVMLYLMFFLLRDGSSLSIRVKQAIP 191

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            L   + + +      VIR+T  G  ++AI +G + G  +W+ G+ + +   VI A +++
Sbjct: 192 -LSAEHKRHLFNKFTTVIRATVKGNILVAITQGALGGLIFWILGIQAALLWAVIMAFLSL 250

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +P  GA + +  V++Y L  G I+    L  +G   + +VD  LRP LVG   KLP    
Sbjct: 251 LPAVGASLIWAPVAVYFLATGAIWQGVILIAFGVFVIGLVDNILRPILVGKDTKLPDYVV 310

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               +GG+   GL G  IGP++ AL   +W     A   ++
Sbjct: 311 LISTLGGMAVFGLNGFVIGPLIAALFITMWDIFSTARPLDR 351


>gi|218705186|ref|YP_002412705.1| putative inner membrane protein [Escherichia coli UMN026]
 gi|293405185|ref|ZP_06649177.1| inner membrane protein [Escherichia coli FVEC1412]
 gi|298380829|ref|ZP_06990428.1| inner membrane protein [Escherichia coli FVEC1302]
 gi|300898531|ref|ZP_07116864.1| hypothetical protein HMPREF9552_02700 [Escherichia coli MS 198-1]
 gi|301026918|ref|ZP_07190314.1| hypothetical protein HMPREF9534_05215 [Escherichia coli MS 69-1]
 gi|218432283|emb|CAR13173.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli UMN026]
 gi|291427393|gb|EFF00420.1| inner membrane protein [Escherichia coli FVEC1412]
 gi|298278271|gb|EFI19785.1| inner membrane protein [Escherichia coli FVEC1302]
 gi|300357795|gb|EFJ73665.1| hypothetical protein HMPREF9552_02700 [Escherichia coli MS 198-1]
 gi|300395265|gb|EFJ78803.1| hypothetical protein HMPREF9534_05215 [Escherichia coli MS 69-1]
          Length = 370

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 66/346 (19%), Positives = 137/346 (39%), Gaps = 7/346 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +
Sbjct: 18  LFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMV 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQS 132
           FI+P+  L    +     L+ K + +    +P   WL+ IP  G      W   L    +
Sbjct: 78  FIIPIALLVNSIVDGSGPLI-KAISSGDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGT 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  ++Q +    
Sbjct: 137 AIMAKVRPYIGTTTTWFVGQAAHIGRFMVHCALMLLFSAL----LYWRGEQVAQGIRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  
Sbjct: 193 TRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G+    T L +W    +  +D  +RP L+     LP +  
Sbjct: 253 LVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSG-VVGTLDNVIRPMLIRMGADLPLILI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G++GG+   G++GLFIGPVL+A+   ++   +  +    ++   
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQPEE 357


>gi|307131465|ref|YP_003883481.1| putative inner membrane protein [Dickeya dadantii 3937]
 gi|306528994|gb|ADM98924.1| predicted inner membrane protein [Dickeya dadantii 3937]
          Length = 367

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 69/353 (19%), Positives = 131/353 (37%), Gaps = 6/353 (1%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +   L         I  +I+   + ++ F      A ++   +WP+          S + 
Sbjct: 8   QRFDLARILFSLLFIGILIIACFWVVQPFILGFAWASMVVVATWPLLIRLQQMLWGSRSL 67

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWAS 120
             ++ T+ ++ LF+ P   L    +     L+S +    +   P   WL  IP  G    
Sbjct: 68  AVLVMTLLLVLLFVFPTSILVSSVIDNASNLISWIGAQGRITPPELDWLQSIPLVGAKLH 127

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W           +            ++   A+  G   +   L ++F ++     Y  
Sbjct: 128 SSWHSLAHSGGPALMAKIQPYIGQTASWVVSQAAHIGRFLMHCTLMVLFSVL----LYSK 183

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  ++  +      L          +  + IR+  LG+ + AI + ++ G    LAG+P 
Sbjct: 184 GDQVALGVRRFAIRLGRQGGDSAVILAAQAIRAVALGVVVTAIVQSVLGGIGLALAGIPY 243

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  +   G         I+L   G+    T L +W    +  +D  +RP L
Sbjct: 244 TTLLTVLMFLSCVAQIGPLTVLIPAIIWLYWSGDTTWGTILLIWSC-VVGTLDNIIRPLL 302

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +     LP L    G++GG+   G++GLFIGPV++A+   +    +    E  
Sbjct: 303 IRMGADLPMLLILSGVIGGLLAFGMIGLFIGPVVLAVSYRLLSAWMKESPEPP 355


>gi|146282264|ref|YP_001172417.1| putative lipoprotein [Pseudomonas stutzeri A1501]
 gi|145570469|gb|ABP79575.1| lipoprotein, putative [Pseudomonas stutzeri A1501]
 gi|327480512|gb|AEA83822.1| putative lipoprotein [Pseudomonas stutzeri DSM 4166]
          Length = 364

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 76/326 (23%), Positives = 143/326 (43%), Gaps = 8/326 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + L  F + +  A ++ F SWP+          ++T  A + T S M L  VPL++L + 
Sbjct: 22  WVLAPFASALFWAAVLAFASWPVMRLLTRWLNGNATLAAGLLTFSWMVLVAVPLVWLGFN 81

Query: 85  GMLEMKELVSKVVLANQHGIPV-PRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLK 142
              ++++  + +      G+P  P WL ++P  G      W        +L      ++ 
Sbjct: 82  IADQIRDANALLHDLQVEGLPPAPEWLGELPLIGDSLVNFWNTVDEQGTALIASIRPYIG 141

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 + R A   G +     L +   ++ +FFFYRDG  +S  + SL   L       
Sbjct: 142 QVANWLLVRSARIGGGM-----LELALSLVLVFFFYRDGPRLSAFVHSLLHRLIGDRADH 196

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
              +V   ++    G+   A  + ++    + +AG+P  + LG++T   + I    P+ +
Sbjct: 197 YLELVAGTVQRVVNGVIGTAAAQAILAYIGFLIAGIPGALVLGLLTFACSFI-MVPPLIW 255

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
                +L  +G+   A  L +WG   +  VD  L+P+L+     LP +    G+ GG+  
Sbjct: 256 GPAVAWLAWQGDYGMAVFLGIWGMFVISGVDNVLKPYLISRGGNLPLVVVLLGVFGGILA 315

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMA 348
            G +GLF+GP L+A+   +  + ++ 
Sbjct: 316 FGFMGLFLGPTLLAVAYSLLGDWLIK 341


>gi|146282661|ref|YP_001172814.1| hypothetical protein PST_2313 [Pseudomonas stutzeri A1501]
 gi|145570866|gb|ABP79972.1| membrane protein, putative [Pseudomonas stutzeri A1501]
          Length = 337

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 75/326 (23%), Positives = 143/326 (43%), Gaps = 3/326 (0%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            + L   + L  F+  V  A+I+     P+      +  +     A+   +  + + ++P
Sbjct: 1   MVSLAFGWILLPFYGAVFWAVILAIIFAPLQRYLYRRFSQRRNLTALFTLLVCLLVAVLP 60

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           ++ +    + E   L  ++         +   L ++       +L         S++   
Sbjct: 61  VILITGMLVQEGATLYKQIESGELDIGRLVSGLRELLPQSVQLQLQRFGFGDLDSMRERL 120

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            +     G  F+   A  FG     + +S   M+  LFFF RDG  +  ++      L  
Sbjct: 121 AS-GALEGSQFLATKAFSFGQGTFQFLISFFVMLYLLFFFIRDGRELVARIRK-AIPLSD 178

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-G 256
           A  +++     +V+R+T  G  ++A+ +G + G  + + G+   +  GV+ A ++++P  
Sbjct: 179 AQKRRLFNKFTRVVRATVKGNIVVAVTQGALGGIIFAVLGISGALLWGVLMAFLSLLPAV 238

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           GA + +T V+IY L+ G I+    L L+G + + +VD  LRP LVG   K+P        
Sbjct: 239 GAGLIWTPVAIYFLMTGAIWQGVILTLYGVLVIGLVDNILRPILVGKDTKMPDYVVLIST 298

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIW 342
           +GG+   GL G  IGP++ AL    W
Sbjct: 299 LGGLALFGLNGFVIGPLVAALFISTW 324


>gi|261217086|ref|ZP_05931367.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261319956|ref|ZP_05959153.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|260922175|gb|EEX88743.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261292646|gb|EEX96142.1| conserved hypothetical protein [Brucella ceti M644/93/1]
          Length = 354

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 76/352 (21%), Positives = 150/352 (42%), Gaps = 7/352 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     ++  + +   + L  ++  VL A+I+    +P+    +          A 
Sbjct: 3   MSVQRASFYILLTLVTIAFAWLLIPYYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAF 62

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW--ASEL 122
           ++ +  +CL I+P+L +F   + E   L  ++         +  +++ I   +     E 
Sbjct: 63  LSVLMCICLVIIPMLAVFGSLVDEGTSLYQRLSSRE---FDINGYIARIMAALPESLEEW 119

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             +      +      + +   G          FG   L + +    M+  LFF +RDG 
Sbjct: 120 LKRFELGTFADWRARISSVVMQGSQLFAARLVSFGQNTLQFFIGFGIMLYLLFFLFRDGA 179

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + +++      L   Y ++       VIR+T  G  IIAI +G++ G  +WL G+ + +
Sbjct: 180 DVGKKIRRAIP-LSDDYTRQFLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAAL 238

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             GVI    +M+P  GA + +T  +++  + G+ ++   L + G + + +VD  LRP LV
Sbjct: 239 LWGVIMTFCSMLPAVGAALVWTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLV 298

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G   ++P        VGG+  +G+ G  IGP++ A+    W       K+  
Sbjct: 299 GKGTRMPDYVVLISTVGGISLIGINGFVIGPLIAAMFIAAWSLLAEEQKDQH 350


>gi|167583840|ref|ZP_02376228.1| hypothetical protein BuboB_00802 [Burkholderia ubonensis Bu]
          Length = 350

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 138/346 (39%), Gaps = 3/346 (0%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            + Q     ++  + +   + L  FF  V    I+     P+     ++  +     A++
Sbjct: 5   NDHQKFFYLLLFVVTVGLCWILTPFFGAVFWGTILAILFQPVQRWLAARFGKRRNLAALL 64

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
               ++ + I+PL+F+    + E+  +  ++  A  +     + +           L   
Sbjct: 65  TLSLIILIVILPLVFVTATLVQEIAYVYQEIKTAQPNYTQYYQDIIHALPTSIQRLLAKY 124

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            +++   ++             F+   A   G     + +S   M+  +FF  RDG  I 
Sbjct: 125 GVTNLTGIQKKLTD-GAAQISQFVAAQALVIGQNTFQFVISFGVMLYMVFFLLRDGGEIG 183

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +++      L   +   +      V+R+T  G   +A+ +G + G  +W+ G+   V   
Sbjct: 184 RRVRRALP-LDDEHKHLLLSKFTTVVRATVKGNIAVALVQGALGGLIFWILGIEGVVLWS 242

Query: 246 VITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            + A ++++P  GA + +   +IY L+   I+    L  +    + +VD  LRP LVG  
Sbjct: 243 ALMAFLSLLPAIGAGLVWVPAAIYFLMIDEIWKCVILVAFCGGVIGLVDNLLRPILVGKD 302

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            K+P        +GG+   G+ G  IGP++ AL    W     A +
Sbjct: 303 TKMPDWVVLLSTLGGMALFGINGFVIGPLIAALFMASWDIFARAEQ 348


>gi|187478630|ref|YP_786654.1| membrane protein [Bordetella avium 197N]
 gi|115423216|emb|CAJ49747.1| putative membrane protein [Bordetella avium 197N]
          Length = 374

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 78/343 (22%), Positives = 144/343 (41%), Gaps = 5/343 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  L        +++ + +  ++ L  F+  V    I+     P++     +        
Sbjct: 2   QQRLQHSRSFIALLIAVSIAFIWLLWPFYGAVFWGTILAVVFAPLHRRLARRLAPRGNLA 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASE 121
           A I+ + V+ + I+PL+ +    + E   L  ++   +   G+   + ++ +P       
Sbjct: 62  AFISLLVVLLVAIIPLILITGSLIQEGAGLYQRMRSGSVDFGLYFQQVMNAMP--PMVHS 119

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L  +             +        F+       G     + +S   M+  LFF  RDG
Sbjct: 120 LLARFDLTELGSVQAKLSNGAMQLSQFMATQLLNVGQDTAQFLVSFGVMLYLLFFLLRDG 179

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +S +L      L   Y + + R    V+R+T  G   +A  +G + G  +W+ G+   
Sbjct: 180 PILSSRLLLALP-LEEEYKRHLFRKFTTVVRATVKGNIAVAAIQGALGGVIFWVLGIQGA 238

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +  GV+ A ++++P  GA + +  V+IY L+ G I+    L L+G + + +VD  LRP L
Sbjct: 239 LLWGVVMAFLSLLPAVGAGLIWLPVAIYFLVTGAIWQGVVLILFGMLVIGMVDNVLRPVL 298

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           VG   KLP        +GG+   GL G  IGP++ AL    W 
Sbjct: 299 VGKDTKLPDYVILISTLGGMALFGLNGFVIGPLIAALFVACWD 341


>gi|308186662|ref|YP_003930793.1| UPF0118 inner membrane protein ydiK [Pantoea vagans C9-1]
 gi|308057172|gb|ADO09344.1| UPF0118 inner membrane protein ydiK [Pantoea vagans C9-1]
          Length = 372

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 70/350 (20%), Positives = 142/350 (40%), Gaps = 8/350 (2%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R+  L         I+ +I+  L+ ++ F      A ++   +WP+   F        + 
Sbjct: 7   RDMDLPQILFTLMFILLLIVACLWVVQPFILGFAWASMVVIATWPLMLKFQRLLWGRRSL 66

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWAS 120
             ++ T+ ++ LFI+P+  L    +     +++ V     H +P   WL D+P  G    
Sbjct: 67  AVIVMTMLLLLLFIIPIALLVSSLIDNSAPVIAWVTQG--HTMPQLLWLRDVPMVGKKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             +   ++   +  +            F    A  FG   +   + ++F ++     Y  
Sbjct: 125 VSYDTLVASGGAGIMAKIQPYIGRTTGFFVAQAGHFGRFMIHLGVMLLFSVL----LYWR 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G   +Q +      +          +  + IR+  LG+ + A+ +G++ G    ++G+P 
Sbjct: 181 GEQAAQGIRHFAFRMAGRRGDAAVLLAAQSIRAVALGVVVTALVQGVLGGIGLAISGIPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G  +      IYL   G+    T L +W    +  +D  LRP L
Sbjct: 241 ATLLTVLMILCCLVQLGPLLVLVPAIIYLYWSGDTTWGTVLLVWSC-VVGTMDNVLRPML 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +     LP +    G++GG+   G++GLFIGPV++A+   +    +    
Sbjct: 300 IRMGADLPMILILSGVIGGLFAFGMIGLFIGPVVLAVSYRLVSVWVHEAP 349


>gi|260568237|ref|ZP_05838706.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|261220299|ref|ZP_05934580.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261313468|ref|ZP_05952665.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261750180|ref|ZP_05993889.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261753452|ref|ZP_05997161.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|261756621|ref|ZP_06000330.1| conserved hypothetical protein [Brucella sp. F5/99]
 gi|265985549|ref|ZP_06098284.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|265986704|ref|ZP_06099261.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|265996354|ref|ZP_06108911.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|294853728|ref|ZP_06794400.1| hypothetical protein BAZG_02708 [Brucella sp. NVSL 07-0026]
 gi|260154902|gb|EEW89983.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|260918883|gb|EEX85536.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261302494|gb|EEY05991.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261736605|gb|EEY24601.1| conserved hypothetical protein [Brucella sp. F5/99]
 gi|261739933|gb|EEY27859.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261743205|gb|EEY31131.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|262550651|gb|EEZ06812.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|264658901|gb|EEZ29162.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|264664141|gb|EEZ34402.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|294819383|gb|EFG36383.1| hypothetical protein BAZG_02708 [Brucella sp. NVSL 07-0026]
          Length = 354

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 76/352 (21%), Positives = 150/352 (42%), Gaps = 7/352 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     ++  + +   + L  ++  VL A+I+    +P+    +          A 
Sbjct: 3   MSVQRASFYILLTLVTIAFAWLLIPYYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAF 62

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW--ASEL 122
           ++ +  +CL I+P+L +F   + E   L  ++         +  +++ I   +     E 
Sbjct: 63  LSVLMCICLVIIPMLAIFGSLVDEGTSLYQRLSSRE---FDINGYIARIMAALPESLEEW 119

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             +      +      + +   G          FG   L + +    M+  LFF +RDG 
Sbjct: 120 LKRFELGTFADWRARISSVVMQGSQLFAARLVSFGQNTLQFFIGFGIMLYLLFFLFRDGA 179

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + +++      L   Y ++       VIR+T  G  IIAI +G++ G  +WL G+ + +
Sbjct: 180 DVGKKIRRAIP-LSDDYTRQFLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAAL 238

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             GVI    +M+P  GA + +T  +++  + G+ ++   L + G + + +VD  LRP LV
Sbjct: 239 LWGVIMTFCSMLPAVGAALVWTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLV 298

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G   ++P        VGG+  +G+ G  IGP++ A+    W       K+  
Sbjct: 299 GKGTRMPDYVVLISTVGGISLIGINGFVIGPLIAAMFIAAWSLLAEEQKDQH 350


>gi|167578405|ref|ZP_02371279.1| hypothetical protein BthaT_09713 [Burkholderia thailandensis TXDOH]
 gi|167616545|ref|ZP_02385176.1| hypothetical protein BthaB_09603 [Burkholderia thailandensis Bt4]
          Length = 356

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 96/325 (29%), Positives = 163/325 (50%), Gaps = 7/325 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSF--ISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A ++    WP       +      +T +A   T ++  L +VP+    
Sbjct: 35  WVIRDFIPAIAWAGVVAIALWPALRRIDALPAFHGRATLVAAALTAAIALLVVVPVAAGL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-MWASELWTKHLSHPQSLKILSETFL 141
              + + +EL+  +    Q GIPVP  LS +P G   AS  W  HL+ P    +   + +
Sbjct: 95  VEAIEQSRELLGWLHRVEQTGIPVPDALSHLPFGSQQASAWWQAHLAQP----LHPASAV 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
           K      +  F   FG   +   +   FM++ LF  +R G  +S  L +     F     
Sbjct: 151 KGVDGGSVVTFGRHFGSRLVHAAVLFGFMLVTLFVIFRAGPRLSGALLTGVRRAFGDSGA 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            + + +   +  T  G+ ++  GEG++LG AY  AG+P    LG++TA+ AM+P  AP+ 
Sbjct: 211 ALLQRMAAAVHGTVTGLVVVGFGEGVLLGLAYAFAGLPHAALLGLVTAVAAMLPFCAPLV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G +  A  L  +GA+ +F+ +  +RP L+G   +LPFL   FG++GG  
Sbjct: 271 FCGAALWLFVQGALGWAIGLAAFGAVVVFVAEHFVRPVLIGSSARLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKESI 346
           T GLLGLF+GP LM ++ V+W E +
Sbjct: 331 TFGLLGLFVGPALMTVLTVLWAEWV 355


>gi|74318619|ref|YP_316359.1| hypothetical protein Tbd_2601 [Thiobacillus denitrificans ATCC
           25259]
 gi|74058114|gb|AAZ98554.1| membrane protein, putative [Thiobacillus denitrificans ATCC 25259]
          Length = 352

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 93/348 (26%), Positives = 179/348 (51%), Gaps = 6/348 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  + +    ++FI  ++ + L  F A +  A I+ + +WP+Y     +     T  A++
Sbjct: 9   LARRAVAFAFLVFIFGLTFWVLSPFLAALAWAGILAYATWPLYQRLSRRLAGRDTLCALL 68

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWT 124
            T++V+ + ++P++++      ++    +++ L    G+P +P  +   PGG W +  + 
Sbjct: 69  MTIAVVTMLLLPMIWVTSMLAGDVSAASAQLRLVATEGLPPLPPGVRSWPGGDWLAAQYA 128

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +  + P  ++   +  L       +   A   G     + L     + ALFF +R G S+
Sbjct: 129 RIQADPAWVRAQIDA-LGLTDAQRLKAVAGGVGRNVAKFAL----AVFALFFLFRHGASL 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             Q+  +         +     V   +R+   G+ + A+ +G +    YW+AGV + V  
Sbjct: 184 LSQVRRVATRWLGGAARGYIHAVGVTVRAVVFGIVLTALAQGALAALGYWVAGVAAPVLW 243

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           GVITA++A+IP   P+ +  +S+ LL +G    A  LFLWGA+ +  VD  +RP ++ GP
Sbjct: 244 GVITALVALIPFVGPVVWIGLSLSLLAQGESQAALGLFLWGALVVSWVDNLIRPLVISGP 303

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            ++PFL  F G++GG++  GL+GLF+GP L+A+   IW+E ++ ++ +
Sbjct: 304 TRIPFLLVFLGVLGGLQAFGLIGLFLGPALLAISVAIWREWLVRVESS 351


>gi|62317671|ref|YP_223524.1| hypothetical protein BruAb2_0762 [Brucella abortus bv. 1 str.
           9-941]
 gi|83269654|ref|YP_418945.1| hypothetical protein BAB2_0776 [Brucella melitensis biovar Abortus
           2308]
 gi|225686264|ref|YP_002734236.1| hypothetical protein BMEA_B0439 [Brucella melitensis ATCC 23457]
 gi|254691168|ref|ZP_05154422.1| hypothetical protein Babob68_13648 [Brucella abortus bv. 6 str.
           870]
 gi|254695528|ref|ZP_05157356.1| hypothetical protein Babob3T_12990 [Brucella abortus bv. 3 str.
           Tulya]
 gi|254698951|ref|ZP_05160779.1| hypothetical protein Babob28_14959 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254732398|ref|ZP_05190976.1| hypothetical protein Babob42_14739 [Brucella abortus bv. 4 str.
           292]
 gi|256111637|ref|ZP_05452627.1| hypothetical protein Bmelb3E_03218 [Brucella melitensis bv. 3 str.
           Ether]
 gi|256256354|ref|ZP_05461890.1| hypothetical protein Babob9C_03093 [Brucella abortus bv. 9 str.
           C68]
 gi|261215918|ref|ZP_05930199.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
 gi|62197864|gb|AAX76163.1| hypothetical membrane protein [Brucella abortus bv. 1 str. 9-941]
 gi|82939928|emb|CAJ12942.1| Protein of unknown function UPF0118 [Brucella melitensis biovar
           Abortus 2308]
 gi|225642369|gb|ACO02282.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
 gi|260917525|gb|EEX84386.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
 gi|326410623|gb|ADZ67687.1| conserved hypothetical protein [Brucella melitensis M28]
          Length = 352

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 77/351 (21%), Positives = 150/351 (42%), Gaps = 5/351 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     ++  + +   + L  ++  VL A+I+    +P+    +          A 
Sbjct: 1   MSVQRASFYILLTLVTIAFAWLLIPYYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAF 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ-HGIPVPRWLSDIPGGMWASELW 123
           ++ +  +CL I+P+L +F   + E   L  ++          + R ++ +P      E  
Sbjct: 61  LSVLMCICLVIIPMLAIFGSLVDEGTSLYQRLSSREFGINGYIARIMAALPES--LEEWL 118

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +      +      + +   G          FG   L + +    M+  LFF +RDG  
Sbjct: 119 KRFELGTFADWRARISSVVMQGSQLFAARLVSFGQNTLQFFIGFGIMLYLLFFLFRDGAD 178

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + +++      L   Y ++       VIR+T  G  IIAI +G++ G  +WL G+ + + 
Sbjct: 179 VGKKIRRAIP-LSDDYTRQFLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAALL 237

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            GVI    +M+P  GA + +T  +++  + G+ ++   L + G + + +VD  LRP LVG
Sbjct: 238 WGVIMTFCSMLPAVGAALVWTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLVG 297

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              ++P        VGG+  +G+ G  IGP++ A+    W       K+  
Sbjct: 298 KGTRMPDYVVLISTVGGISLIGINGFVIGPLIAAMFIAAWSLLAEEQKDQH 348


>gi|322833507|ref|YP_004213534.1| hypothetical protein Rahaq_2804 [Rahnella sp. Y9602]
 gi|321168708|gb|ADW74407.1| protein of unknown function UPF0118 [Rahnella sp. Y9602]
          Length = 365

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 68/348 (19%), Positives = 135/348 (38%), Gaps = 6/348 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             I  + + S++ ++ F    + A ++   +WP+                +I T+ ++ L
Sbjct: 18  LFIALMTVASIWIVQPFILGFVWAGMVVIATWPLMIKLQRLLWGRRFLAVIIMTLLLILL 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           F++P+  L    +     LV      +   +P  +WL+ IP  G      W   ++   +
Sbjct: 78  FVLPIALLVSSAVENGAPLVEIASHPSSLHMPDFQWLNAIPLVGNKLYNGWHALINGGGN 137

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A   G   +   L ++F  +     Y  G +++  +    
Sbjct: 138 ALMSKVQPYVGQTAAWFVTQAGHLGRFIVHCALMLLFSAL----LYSRGENVAMGIRHFA 193

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + AI + ++ G    +AG+P    L V+  +  
Sbjct: 194 VRLAAERGDAAVILAGQAIRAVALGVVVTAIVQSVLGGIGLAIAGIPYATVLTVVMFVCC 253

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +   G  +      I+L   G+    T L +W    +  +D  LRP L+     LP L  
Sbjct: 254 VAQIGPLLVLIPAIIWLYWSGDNTWGTVLLVWSC-VVGSLDNVLRPVLIRMGADLPMLLI 312

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
             G++GG+   G++GLFIGPV++A+   +    +    E   +     
Sbjct: 313 LSGVIGGLFAFGMIGLFIGPVVLAVSYRLISLWVNEAPEPDMEPEEAL 360


>gi|262043269|ref|ZP_06016400.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039368|gb|EEW40508.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 341

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 71/315 (22%), Positives = 131/315 (41%), Gaps = 5/315 (1%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           ++ +L A I+     P+ +   ++  E +   A++  V +  +   PL  +      E+ 
Sbjct: 2   YSAILWAAILAVIFNPVKNKIRTRLGERNGLAALMTIVIICLIVFTPLAIILSSLAYELN 61

Query: 91  ELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
            + SK+   + Q    V    + +PG  WA      H            +     G  ++
Sbjct: 62  LVYSKLQHNDTQFPTVVASLFAHLPG--WARSFLADHNLDSAQQIQQQLSDAALKGGQYL 119

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
              A   G     + +S   M+  LFF  +DG  +   +      L     + +      
Sbjct: 120 AGSAFLIGKGTFGFTVSFGIMLYLLFFLLKDGPYLVLLILE-SLPLSSYVKQHLFAKFAA 178

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIY 268
           V R+T  G   +A+ +G + G A+W+AG+   +  G + A +++IP  G+ I +   +IY
Sbjct: 179 VARATVKGTVAVALAQGALGGFAFWIAGLDGSILWGALMAFLSLIPAVGSAIIWVPAAIY 238

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L   G ++    +  +  I + +VD  LRP LVG   ++P        +GG+   G+ G 
Sbjct: 239 LFATGQLWQGAFIVGFFVIVIGLVDNILRPLLVGKDTRMPDYLILIATLGGMEIYGINGF 298

Query: 329 FIGPVLMALIAVIWK 343
            IGP++ AL    W 
Sbjct: 299 VIGPLIAALFIACWN 313


>gi|167565423|ref|ZP_02358339.1| hypothetical protein BoklE_22909 [Burkholderia oklahomensis EO147]
          Length = 356

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 96/325 (29%), Positives = 160/325 (49%), Gaps = 7/325 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISK--KEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A ++    WP      +       +T +A   T +V  L +VP+    
Sbjct: 35  WVIRDFIPAIAWACVVAIALWPALRRIDAHPGFHGRATLVAAALTTAVALLVVVPIAAGL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-MWASELWTKHLSHPQSLKILSETFL 141
              + +  EL+  +  A Q GIP P  L+ +P G   AS  W  +L+ P    +  E  +
Sbjct: 95  VEAVDQSHELLGWLHRAEQTGIPAPDALAHLPFGSQQASAWWHAYLAKP----LHPEAAV 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
           K      +  F   FG       +   FM++ LF  ++ G  +S  L +     F     
Sbjct: 151 KGVDGGAVVTFGRHFGSRIAHAAVLFGFMLVTLFVIFQAGPRLSGALLTGVRRAFGDNGA 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            + + +   +  T  G+ ++  GEG++LG AY  AG+P    LG++TAI AM+P  AP+ 
Sbjct: 211 ALLQRMAAAVYGTVTGLVVVGFGEGVLLGVAYAFAGLPHAALLGLVTAIAAMLPFCAPLV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G +  A  L  +G + +F+ +  +RP L+G   +LPFL   FG++GG  
Sbjct: 271 FCGAALWLFVQGAVGWAIGLAAFGFVVVFVAEHFVRPVLIGNSARLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKESI 346
           T GLLGLFIGP LM ++ V+W E +
Sbjct: 331 TFGLLGLFIGPALMTVLTVLWVEWV 355


>gi|257143048|ref|ZP_05591310.1| hypothetical protein BthaA_28058 [Burkholderia thailandensis E264]
          Length = 356

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 95/325 (29%), Positives = 163/325 (50%), Gaps = 7/325 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSF--ISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A ++    WP       +      +T +A   T ++  L +VP+    
Sbjct: 35  WVIRDFIPAIAWAGVVAIALWPALRRIDALPAFHGRATLVAAALTAAIALLVVVPVAAGL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-MWASELWTKHLSHPQSLKILSETFL 141
              + + +EL+  +    Q GIP+P  LS +P G   AS  W  HL+ P    +   + +
Sbjct: 95  VEAIEQSRELLGWLHRVEQTGIPMPDALSHLPFGSQQASAWWQAHLAQP----LHPASAV 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
           K      +  F   FG   +   +   FM++ LF  +R G  +S  L +     F     
Sbjct: 151 KGVDGGSVVTFGRHFGSRLVHAAVLFGFMLVTLFVIFRAGPRLSGALLTGVRRAFGDSGA 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            + + +   +  T  G+ ++  GEG++LG AY  AG+P    LG++TA+ AM+P  AP+ 
Sbjct: 211 ALLQRMAAAVHGTVTGLVVVGFGEGVLLGLAYAFAGLPHAALLGLVTAVAAMLPFCAPLV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +++L ++G +  A  L  +GA+ +F+ +  +RP L+G   +LPFL   FG++GG  
Sbjct: 271 FCGAALWLFVQGALGWAIGLAAFGAVVVFVAEHFVRPVLIGSSARLPFLLVLFGILGGAE 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKESI 346
           T GLLGLF+GP LM ++ V+W E +
Sbjct: 331 TFGLLGLFVGPALMTVLTVLWAEWV 355


>gi|309780687|ref|ZP_07675428.1| membrane protein [Ralstonia sp. 5_7_47FAA]
 gi|308920369|gb|EFP66025.1| membrane protein [Ralstonia sp. 5_7_47FAA]
          Length = 349

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 70/351 (19%), Positives = 142/351 (40%), Gaps = 5/351 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           ++    Q     ++  + L   + L  FF  V   +I+     P+  + +++  +     
Sbjct: 2   DSGNGHQKFFFLLLFVVTLGLCWILSPFFGAVFWGVILAILFQPVQRALVARMGKRPNLA 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWASE 121
           A+     ++ + I+P++F+    + E+     ++  A  +    +   +  +P   W  +
Sbjct: 62  ALATLTLIILIVILPVIFVTATIVQEIGVAYQQIQGAQPNYSRYLSEAVQALP--TWVQQ 119

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L  K      +               F    A   G     + +    M+  +FF  RDG
Sbjct: 120 LLAKAGLTNIAGIQKKLADGAAQISQFAATKALSIGQNTFQFVVGFGVMLYMVFFLLRDG 179

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I +++      +   + + +      V+R+T  G   +A+ +G++ G  +W  G+   
Sbjct: 180 TDIGRRVRRALP-MDEEHKRLLLNKFTTVVRATVKGNIAVALVQGVLGGLIFWFLGIDGV 238

Query: 242 VALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           V  G + A ++++P  GA + +  V++Y L+ G I+    L  +    + +VD  LRP L
Sbjct: 239 VLWGALMAFLSLLPAIGASLVWIPVALYFLMVGAIWKCVILVAFCGGVIGLVDNLLRPLL 298

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           VG   K+P        +GG+   G+ G  IGP++ AL    W        E
Sbjct: 299 VGKDTKMPDWVVLISTLGGMELFGITGFVIGPLVAALFMASWDIFAREQSE 349


>gi|310767540|gb|ADP12490.1| putative inner membrane protein [Erwinia sp. Ejp617]
          Length = 374

 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 66/352 (18%), Positives = 132/352 (37%), Gaps = 7/352 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L         I   I+   + ++ F      A ++   +WP+  +             + 
Sbjct: 10  LAQIVFSLLFISLTIVACFWIVQPFILGFAWASMVVIATWPLMINIQRLLWGRRALAVIT 69

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWT 124
            T+ ++ +FI+P+  L    +     +++ +       +P   WL   P  G      + 
Sbjct: 70  MTLLLILVFIIPVALLVNSLVENSAPMIAWLGSG-HLQMPDLHWLRSTPLVGRKLYSAYH 128

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             ++   S  +            F    A  FG   +   L ++F ++     Y  G  +
Sbjct: 129 NLIAGGGSALLAQVQPYIGRTTGFFFAQAGHFGRFMMHLGLMLLFSVL----LYWRGEQV 184

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              +      L          +  + IR+  LG+ + A+ +G++ G    ++G+P    L
Sbjct: 185 GLGIRHFAFRLASRRGDAAVLLAAQAIRAVALGVVVTALVQGVLGGIGLAVSGIPFATIL 244

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            V+  +  ++  G  I      I+L   G+    T L +W    +  +D  LRP L+   
Sbjct: 245 TVLMILSCLVQLGPLIVLVPAIIWLYWSGDTTWGTVLLIWSC-VVGTLDNVLRPMLIRMG 303

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
             LP +    G++GG+   G++GLFIGPV++A+   +    +       E  
Sbjct: 304 ADLPMILILSGVIGGLVAFGMIGLFIGPVVLAISYRLVSVWVHETPAPHENP 355


>gi|17989151|ref|NP_541784.1| putative transmembrane protein [Brucella melitensis bv. 1 str. 16M]
 gi|256043359|ref|ZP_05446292.1| hypothetical protein Bmelb1R_02664 [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|17985002|gb|AAL54048.1| putative transmembrane protein [Brucella melitensis bv. 1 str. 16M]
          Length = 352

 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 77/351 (21%), Positives = 150/351 (42%), Gaps = 5/351 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     ++  + +   + L  ++  VL A+I+    +P+    +          A 
Sbjct: 1   MSVQRASFYILLTLVTIAFAWLLIPYYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAF 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ-HGIPVPRWLSDIPGGMWASELW 123
           ++ +  +CL I+P+L +F   + E   L  ++          + R ++ +P      E  
Sbjct: 61  LSVLMCICLVIIPMLAIFGSLVDEGTSLYQRLSSREFGINGYIARIMAALPES--LEEWL 118

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +      +      + +   G          FG   L + +    M+  LFF +RDG  
Sbjct: 119 KRFELGTFADWRARISSVVMQGSQLFAARLVSFGQNTLQFFIGFGIMLYLLFFLFRDGAD 178

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + +++      L   Y ++       VIR+T  G  IIAI +G++ G  +WL G+ + + 
Sbjct: 179 VGKKIRRAIP-LSDDYTRQFLEKFTAVIRATVKGNIIIAIIQGMIGGITFWLLGIEAALL 237

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            GVI    +M+P  GA + +T  +++  + G+ ++   L + G + + +VD  LRP LVG
Sbjct: 238 WGVIMTFCSMLPAVGAALVWTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLVG 297

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              ++P        VGG+  +G+ G  IGP++ A+    W       K+  
Sbjct: 298 KGTRMPDYVVLISTVGGISLIGINGFVIGPLIAAMFIAAWSLLAEEQKDQH 348


>gi|226943233|ref|YP_002798306.1| hypothetical protein Avin_11000 [Azotobacter vinelandii DJ]
 gi|226718160|gb|ACO77331.1| conserved hypothetical protein [Azotobacter vinelandii DJ]
          Length = 346

 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 70/342 (20%), Positives = 141/342 (41%), Gaps = 6/342 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSL---YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           M+NP+   R  +  ++L+S+   + +  F+  +  A ++     P+              
Sbjct: 1   MINPRFEYRVFLFLLVLISVAFVWIILPFYGAIFWAAVLAILFHPLQIRLQRHLGNHPNL 60

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A++  +  + + ++P+  +    + E   L +++         +   L         ++
Sbjct: 61  SALLTLIVCVVVAVLPITIVSMLLIQEGATLYNEIEAGRIDFAGMLEGLKAQLPEPLQAQ 120

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    L     L+      +   G   +   A   G     + L    M+  LFFF RDG
Sbjct: 121 MSRFGLDSRYDLRDRIAN-IAMQGSQLLATKAFNIGQNTFQFILGFFVMLYLLFFFLRDG 179

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            ++  ++      L      ++ + +  ++++T  G  ++A+ +G + G  + L G+P  
Sbjct: 180 TALVARIRE-AIPLSEMKKSRLFQRITGMVQATIKGSLVVAVIQGSLGGVIFALLGIPRA 238

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +  GV  A ++ +P  G  + +  V+IY L+ G I  +  L   G   + +VD  +RP L
Sbjct: 239 LLWGVAMAFLSFLPALGTGLVWAPVAIYFLLSGAILKSVLLTACGIFIIGLVDNIVRPIL 298

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           V    +LP        +GG+   GL G  IGPV+ AL    W
Sbjct: 299 VSKDTRLPDYLVLVSTLGGLALFGLNGFVIGPVIAALFVSTW 340


>gi|188533959|ref|YP_001907756.1| putative inner membrane protein [Erwinia tasmaniensis Et1/99]
 gi|188029001|emb|CAO96869.1| Conserved hypothetical protein (UPF0118) [Erwinia tasmaniensis
           Et1/99]
          Length = 374

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 66/350 (18%), Positives = 135/350 (38%), Gaps = 7/350 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L         I   I+   + ++ F      A ++   +WP+   F        +   + 
Sbjct: 10  LAQIVFSLLFISLTIVACFWIVQPFILGFAWASMVVIATWPLMIKFQRLLWGKRSLAVIT 69

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWT 124
            T+ ++ +FI+P+  L    +     L++ +       +P  +W+  IP  G      + 
Sbjct: 70  MTLLLILVFIIPVALLVNSLIENSGPLIAWLGSG-HLQMPELQWMRSIPLVGRKLYSAYH 128

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             ++   +  +            F    A  FG   +   L ++F ++     Y  G  +
Sbjct: 129 NLVAGGGTALLAQVQPYIGRTTGFFFAQAGHFGRFMMHLGLMLLFSVL----LYWRGEQV 184

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            Q +      L          +  + IR+  LG+ + A+ + ++ G    ++G+P    L
Sbjct: 185 GQGIRHFAFRLASRRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAISGIPFATIL 244

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            V+  +  ++  G  +      I+L   G+    T L +W    +  +D  LRP L+   
Sbjct: 245 TVLMILSCLVQLGPLVVLVPAIIWLYWSGDTTWGTVLLVWSC-VVGTLDNVLRPVLIRMG 303

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             LP +    G++GG+   G++GLFIGPV++A+   +    +       E
Sbjct: 304 ADLPMILILSGVIGGLIAFGMIGLFIGPVVLAISYRLVSVWVHEAPAPHE 353


>gi|259908561|ref|YP_002648917.1| putative inner membrane protein [Erwinia pyrifoliae Ep1/96]
 gi|224964183|emb|CAX55690.1| conserved uncharacterized protein [Erwinia pyrifoliae Ep1/96]
 gi|283478527|emb|CAY74443.1| UPF0118 inner membrane protein ydiK [Erwinia pyrifoliae DSM 12163]
          Length = 374

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 66/352 (18%), Positives = 132/352 (37%), Gaps = 7/352 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L         I   I+   + ++ F      A ++   +WP+  +             + 
Sbjct: 10  LAQIVFSLLFISLTIVACFWIVQPFILGFAWASMVVIATWPLMINIQRLLWGRRALAVIT 69

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWT 124
            T+ ++ +FI+P+  L    +     +++ +       +P   WL   P  G      + 
Sbjct: 70  MTLLLILVFIIPVALLVNSLIENSAPMIAWLGSG-HLQMPDLHWLRSTPLVGRKLYSAYH 128

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             ++   S  +            F    A  FG   +   L ++F ++     Y  G  +
Sbjct: 129 NLIAGGGSALLAQVQPYIGRTTGFFFAQAGHFGRFMMHLGLMLLFSVL----LYWRGEQV 184

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              +      L          +  + IR+  LG+ + A+ +G++ G    ++G+P    L
Sbjct: 185 GLGIRHFAFRLASRRGDAAVLLAAQAIRAVALGVVVTALVQGVLGGIGLAVSGIPFATIL 244

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            V+  +  ++  G  I      I+L   G+    T L +W    +  +D  LRP L+   
Sbjct: 245 TVLMILSCLVQLGPLIVLVPAIIWLYWSGDTTWGTVLLIWSC-VVGTLDNVLRPMLIRMG 303

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
             LP +    G++GG+   G++GLFIGPV++A+   +    +       E  
Sbjct: 304 ADLPMILILSGVIGGLVAFGMIGLFIGPVVLAISYRLVSVWVHETPAPHENP 355


>gi|187923378|ref|YP_001895020.1| hypothetical protein Bphyt_1381 [Burkholderia phytofirmans PsJN]
 gi|187714572|gb|ACD15796.1| protein of unknown function UPF0118 [Burkholderia phytofirmans
           PsJN]
          Length = 371

 Score =  208 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 75/360 (20%), Positives = 152/360 (42%), Gaps = 7/360 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+   L  +    + ++ ++  SL  L  F   +L   I+ ++SW +Y    +       
Sbjct: 1   MKSDQLIERLAAVFALIILVGGSLLVLAPFTTALLWGAILSYSSWGLYRRLTAALGGRRK 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMW 118
             A +  + ++ + + P ++  +     + E+V+ V    + G+P +P W++ IP  G  
Sbjct: 61  GAATLIVLIILIVVLGPFVYAGFAFGAHVHEIVALVQRLFEAGLPDLPPWVARIPLVGSN 120

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
               W +  S    L     T     G   +    +            +   I+  FFFY
Sbjct: 121 IEAFWERLTSSNSELIAQLRTLAAPAGKWILAAAIA-----VTHGLGLLALSIVLAFFFY 175

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
             G   +  L++    +       +  +    ++    G+   A+ +G++ G   W+AGV
Sbjct: 176 TGGEGAAAWLNAGMRRIAGERADYLLALAGSTVKGVVYGILGTALVQGILAGFGCWIAGV 235

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P+   LG+ T  +++IPGG  + +   +I+L   G    A  L +WG + + + D  ++P
Sbjct: 236 PAPALLGLATFFLSVIPGGPVVVWLPAAIWLYHGGATGWAIFLVVWGVLAVGMSDNVIKP 295

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            L+G    +P +    G++GG    G LG+FIGP L+A+   +  +  +     +  +  
Sbjct: 296 ILIGKNSDMPLILVMLGILGGAFAFGFLGVFIGPTLLAVAYTVLHDWTIGAPAARALVPD 355


>gi|146306684|ref|YP_001187149.1| hypothetical protein Pmen_1653 [Pseudomonas mendocina ymp]
 gi|145574885|gb|ABP84417.1| protein of unknown function UPF0118 [Pseudomonas mendocina ymp]
          Length = 362

 Score =  208 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 76/345 (22%), Positives = 158/345 (45%), Gaps = 8/345 (2%)

Query: 4   TMLNPQGIMRWMIMFIILVS---LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           TM +P    +  I+ + LV+    + L  F+  V  A+++     P+      +      
Sbjct: 8   TMPSPSVEHKAFILLLALVTIAFFWILLPFYGAVFWAIVLAVVFAPLQQRLARRFGGRGN 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWA 119
             A++  +  + + I+P++F+    + E   L  ++       G  V   +  +P  M  
Sbjct: 68  LSALLTLIVCLLVAILPVIFVISAVVAEGTSLYQRLESGELDIGAYVTNTIEMLPPFMQ- 126

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            +L    +S+ + L+          G  ++       G +  ++ +    M+  LFF  R
Sbjct: 127 DQLHRFGMSNLEGLREQISK-GAMAGSQYLATKVFVIGQMTFEFLIGFFIMLYLLFFLLR 185

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG ++++ + +    L     +++     +V+R+T  G  ++A  +G + G   W+ G+P
Sbjct: 186 DGRTLARDVRTAVP-LGDTTKRRLQIKFTRVVRATVKGNIVVAAVQGALGGLILWVLGLP 244

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           S +  G + A ++++P  GA + +  ++ YLL+ G+++    L ++G + + +VD  LRP
Sbjct: 245 SPLLWGALMAFLSLLPAVGAGLVWAPMAAYLLLSGSVWQGVTLSVFGVLVISLVDNILRP 304

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            LVG   ++P        +GG+  +GL G  IGP++ AL    W 
Sbjct: 305 ILVGKDTRMPDYLILTSTLGGLALLGLNGFVIGPLVAALFVASWN 349


>gi|54293714|ref|YP_126129.1| hypothetical protein lpl0767 [Legionella pneumophila str. Lens]
 gi|53753546|emb|CAH15001.1| hypothetical protein lpl0767 [Legionella pneumophila str. Lens]
          Length = 350

 Score =  208 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 103/338 (30%), Positives = 174/338 (51%), Gaps = 3/338 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + I   + + I++ SLY +  F   ++ A II   ++P+Y+ +           A + T
Sbjct: 6   KELISIGLTVSIVIFSLYIVHKFIPSMIWAAIIVIATYPLYTRWRKLFGNKHNTSAFLFT 65

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKH 126
             +  LF++PL +L    + E +  ++ +   N+ G   P +  +IP  G    + W  +
Sbjct: 66  TLMGLLFLIPLSWLIGILIKESQLFINFLQHINKEGGAAPEFFKNIPLVGDDLIQYWDVN 125

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +  P S+K        T        +  + G+        + F ++ LFFFYRDG  +  
Sbjct: 126 IGKPGSIKEFLSNLHVTLTPT--SYYIKQIGVNLAHRSFQVGFTLLTLFFFYRDGDKLLL 183

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           Q+  +GE+     W + S  +P  +R T  G  ++ IG G+++G  Y L G P+    G 
Sbjct: 184 QIQHIGEYCLGDRWFRYSDKLPSALRGTVNGTIVVGIGVGILMGICYALVGFPAPTLTGF 243

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           ITA+ AMIP   PI F  V++ LL  G++     + +WG + +F+ D  ++P L+GG I+
Sbjct: 244 ITALAAMIPFVVPIVFIIVALILLSVGSLIGGIIVLVWGTLVMFVADHFVKPVLIGGAIQ 303

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           LPFL   FG++GGV T+GLLGLF+GP++M L   +W+E
Sbjct: 304 LPFLAVLFGILGGVETLGLLGLFLGPMVMVLFVTLWQE 341


>gi|148360616|ref|YP_001251823.1| transmembrane permease [Legionella pneumophila str. Corby]
 gi|148282389|gb|ABQ56477.1| transmembrane permease [Legionella pneumophila str. Corby]
 gi|307609525|emb|CBW99023.1| hypothetical protein LPW_08081 [Legionella pneumophila 130b]
          Length = 350

 Score =  208 bits (531), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 103/338 (30%), Positives = 174/338 (51%), Gaps = 3/338 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + I   + + I++ SLY +  F   ++ A II   ++P+Y+ +           A + T
Sbjct: 6   KELISIGLTVSIVIFSLYIVHKFIPSMIWAAIIVIATYPLYTRWRKLFGNKHNTSAFLFT 65

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKH 126
             +  LF++PL +L    + E +  ++ +   N+ G   P +  +IP  G    + W  +
Sbjct: 66  TLMGLLFLIPLSWLIGILIKESQLFINFLQHINKEGGAAPEFFKNIPLVGDDLIQYWDVN 125

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +  P S+K        T        +  + G+        + F ++ LFFFYRDG  +  
Sbjct: 126 IGKPGSIKEFLSNLHVTLTPT--SYYIKQIGVNLAHRSFQVGFTLLTLFFFYRDGDKLLL 183

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           Q+  +GE+     W + S  +P  +R T  G  ++ IG G+++G  Y L G P+    G 
Sbjct: 184 QIQHIGEYCLGDRWFRYSDRLPSALRGTVNGTIVVGIGVGILMGICYALVGFPAPTLTGF 243

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           ITA+ AMIP   PI F  V++ LL  G++     + +WG + +F+ D  ++P L+GG I+
Sbjct: 244 ITALAAMIPFVVPIVFIIVALILLSVGSLIGGIIVLVWGTLVMFVADHFVKPVLIGGAIQ 303

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           LPFL   FG++GGV T+GLLGLF+GP++M L   +W+E
Sbjct: 304 LPFLAVLFGILGGVETLGLLGLFLGPMVMVLFVTLWQE 341


>gi|186476728|ref|YP_001858198.1| hypothetical protein Bphy_1973 [Burkholderia phymatum STM815]
 gi|184193187|gb|ACC71152.1| protein of unknown function UPF0118 [Burkholderia phymatum STM815]
          Length = 382

 Score =  208 bits (531), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 71/333 (21%), Positives = 141/333 (42%), Gaps = 7/333 (2%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
             F   +L   I+ F+SW +Y    +       + A +  + ++ + + P ++  +    
Sbjct: 37  APFTTALLWGAILSFSSWGLYCKLATSLGGRRRWAATLIVLIILIVVLGPFVYAGFALGA 96

Query: 88  EMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             +++ + V      G+P +P W++ IP  G      W +  S    +           G
Sbjct: 97  HTRDITALVQHLMDAGLPDLPDWVARIPLVGSSIESFWERVTSSNSEMVAQLRGLAAPAG 156

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              +    +            +   II  FFFY  G   +  L++    +       +  
Sbjct: 157 KWILAAALA-----VTHGLGLLALSIILTFFFYTGGEGAAAWLNAGMRRIAGERADYLLA 211

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
           +    ++    G+   A+ +G++ G   W+AGVP+   LG+ T  +++IPGG  + +   
Sbjct: 212 LAGSTVKGVVYGILGTALVQGVLAGFGCWIAGVPAPALLGLATFFLSVIPGGPVVVWLPA 271

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +I+L   G    A  L +WG + + + D  ++P L+G    +P +    G++GG    G 
Sbjct: 272 AIWLYHGGETGWAIFLVVWGVVVVGMSDNVVKPILIGKSSDMPLILVMLGILGGAFAFGF 331

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           LG+FIGP L+A+   +  +  +   E +E I+ 
Sbjct: 332 LGVFIGPTLLAVAYTVLHDWTIGSPEARELIAK 364


>gi|330502637|ref|YP_004379506.1| hypothetical protein MDS_1723 [Pseudomonas mendocina NK-01]
 gi|328916923|gb|AEB57754.1| hypothetical protein MDS_1723 [Pseudomonas mendocina NK-01]
          Length = 353

 Score =  208 bits (531), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 73/344 (21%), Positives = 151/344 (43%), Gaps = 5/344 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q     +++ + +   + L  F+  V  A+++     P+    I +    S   A++ ++
Sbjct: 8   QKAFILLLVLVTIAFFWILLPFYGAVFWAMVLAVVFAPLQERLIRRTGGRSNLAALLTSI 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWASELWTKHL 127
             + + I+P++F+    + E   L  K+       G  V  ++  +P  +          
Sbjct: 68  ICLLVAILPVIFITSSVVAEGASLYQKLESGELDIGTYVTSFIQMLPPSIQEQLDRLGMS 127

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                 + +S+  +   G  ++       G    ++ +    M+  LFF  RDG  +  +
Sbjct: 128 DLDGLREQVSKGAM--AGSQYLATKVFAIGQGTFEFFIGFFVMLYLLFFLLRDGKELVHK 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + +    L     +++     +V+R+T  G  ++A  +G + G  +W  G+ S +  GV+
Sbjct: 186 IRTTIP-LADTTKRRLQIKFTRVVRATVKGNVVVAAVQGALGGFIFWALGIYSPLLWGVL 244

Query: 248 TAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A ++++P  GA I +  V++YL++ G++     L  +G + + +VD  LRP LVG   +
Sbjct: 245 MAFLSLLPAAGAGIVWAPVAVYLMLSGSLVQGIILTAFGVLVIGLVDNILRPILVGKDTR 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +P        +GG+  +GL G  IGP++ AL    W       K
Sbjct: 305 MPDYLILISTLGGLSLLGLNGFVIGPLVAALFVASWNLFGAKKK 348


>gi|260544905|ref|ZP_05820726.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260756769|ref|ZP_05869117.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260760200|ref|ZP_05872548.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260763438|ref|ZP_05875770.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260882585|ref|ZP_05894199.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|265993113|ref|ZP_06105670.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|265999137|ref|ZP_05465132.2| conserved hypothetical protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|297249715|ref|ZP_06933416.1| hypothetical protein BAYG_02478 [Brucella abortus bv. 5 str. B3196]
 gi|260098176|gb|EEW82050.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260670518|gb|EEX57458.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260673859|gb|EEX60680.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260676877|gb|EEX63698.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260872113|gb|EEX79182.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|262763983|gb|EEZ10015.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263092386|gb|EEZ16639.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|297173584|gb|EFH32948.1| hypothetical protein BAYG_02478 [Brucella abortus bv. 5 str. B3196]
 gi|326553915|gb|ADZ88554.1| conserved hypothetical protein [Brucella melitensis M5-90]
          Length = 354

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 77/351 (21%), Positives = 150/351 (42%), Gaps = 5/351 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     ++  + +   + L  ++  VL A+I+    +P+    +          A 
Sbjct: 3   MSVQRASFYILLTLVTIAFAWLLIPYYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAF 62

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ-HGIPVPRWLSDIPGGMWASELW 123
           ++ +  +CL I+P+L +F   + E   L  ++          + R ++ +P      E  
Sbjct: 63  LSVLMCICLVIIPMLAIFGSLVDEGTSLYQRLSSREFGINGYIARIMAALPES--LEEWL 120

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +      +      + +   G          FG   L + +    M+  LFF +RDG  
Sbjct: 121 KRFELGTFADWRARISSVVMQGSQLFAARLVSFGQNTLQFFIGFGIMLYLLFFLFRDGAD 180

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + +++      L   Y ++       VIR+T  G  IIAI +G++ G  +WL G+ + + 
Sbjct: 181 VGKKIRRAIP-LSDDYTRQFLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAALL 239

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            GVI    +M+P  GA + +T  +++  + G+ ++   L + G + + +VD  LRP LVG
Sbjct: 240 WGVIMTFCSMLPAVGAALVWTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLVG 299

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              ++P        VGG+  +G+ G  IGP++ A+    W       K+  
Sbjct: 300 KGTRMPDYVVLISTVGGISLIGINGFVIGPLIAAMFIAAWSLLAEEQKDQH 350


>gi|330503226|ref|YP_004380095.1| hypothetical protein MDS_2312 [Pseudomonas mendocina NK-01]
 gi|328917512|gb|AEB58343.1| hypothetical protein MDS_2312 [Pseudomonas mendocina NK-01]
          Length = 361

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 83/334 (24%), Positives = 146/334 (43%), Gaps = 8/334 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + L  F++ +  A ++ F SWP+            +  A I T   + +  VPL++L + 
Sbjct: 22  WVLAPFWSALFWAAVLAFASWPLMRLLTQLLNGRLSLAAGILTGVWVVMVAVPLVWLGFN 81

Query: 85  GMLEMKELVSKVVLANQHGIPVPR-WLSDIP-GGMWASELWTKHLSHPQSLKILSETFLK 142
               +K+  + V      G+P P  WL  IP  G    ELW        +       +L 
Sbjct: 82  LADHIKDANALVRDLQVEGLPPPPSWLGSIPLVGDRLVELWRTIDQQGAAFFDTLRPYLG 141

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
             G   + R A + G   ++  LS    ++ +FFFYRDG  ++  + SL E L       
Sbjct: 142 QVGNWLVARSA-KIGAGMVELALS----LVLVFFFYRDGPRLAVFVHSLLERLIGERADH 196

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
              +V   ++    G+   A  + ++    + +AGVP  + LG++T   + I    P+ +
Sbjct: 197 YLELVAGTVQRVVNGVIGTAAAQAVLAYIGFVIAGVPGALVLGLLTFAFSFI-MIPPLIW 255

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
                +L+ +G I  A  L +WG   +  VD  L+P+L+     LP +    G+ GG+  
Sbjct: 256 GPAVAWLVWQGEIGMAIFLGVWGFFIISGVDNILKPYLISRGGNLPLVVVLLGVFGGILA 315

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            G +GLF+GP L+A+   +  + +       E +
Sbjct: 316 FGFMGLFLGPTLLAVAYSLLSDWVANKTPPVETV 349


>gi|154243797|ref|YP_001409370.1| hypothetical protein Xaut_4931 [Xanthobacter autotrophicus Py2]
 gi|154162919|gb|ABS70134.1| protein of unknown function UPF0118 [Xanthobacter autotrophicus
           Py2]
          Length = 351

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 68/336 (20%), Positives = 137/336 (40%), Gaps = 3/336 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +      ++ + +  L+ L  ++  +L A+I+     P+               A ++ 
Sbjct: 7   QEFAFLATLVLVTVAFLWLLSPYYGAILWAVILAILFDPLQRGLERWLGGRRNLAAALSV 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++ +C+ ++P   +      E   L +++         +   L  +        L    L
Sbjct: 67  LACICVVVIPGTLILAALANEAASLYTRIGTREFDPGTMLAQLQGVLPSFVWRALAALDL 126

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                L+    +FL       +   A   G     + +S+  M+  LFF +RDG +++  
Sbjct: 127 GDMAQLQTRLTSFLLE-FSQTLANRAIIIGQNTAQFVISLGVMLYLLFFLFRDGVALAAS 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L      ++      V+++T  G   IA  +G + G  + + G+ + +  GV+
Sbjct: 186 IRKASP-LGAHETDQLLEKFTSVVKATVKGNVTIAAIQGAIGGVTFGMLGIQAALLWGVL 244

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A+++++P  GA + +   + YLL+ G       L   G + +  VD  LRP LVG    
Sbjct: 245 MAVLSLLPAVGAGLVWVPAAAYLLLTGAYLKGAILLAIGTLVISTVDNVLRPALVGKGTM 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           LP        VGG+  +G+ G  +GP+++AL    W
Sbjct: 305 LPDYAVLISTVGGLSLIGMNGFVLGPLIVALFVAAW 340


>gi|307320954|ref|ZP_07600362.1| protein of unknown function UPF0118 [Sinorhizobium meliloti AK83]
 gi|306893438|gb|EFN24216.1| protein of unknown function UPF0118 [Sinorhizobium meliloti AK83]
          Length = 371

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 88/341 (25%), Positives = 159/341 (46%), Gaps = 7/341 (2%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           +     L  F + +L A +I F++WP Y  F           A   TV V+ + + PL  
Sbjct: 22  IGCTLVLWPFLSAILWAAVICFSTWPAYRLFERAVGGYRALAAAAMTVLVVVVIVAPLAL 81

Query: 81  LFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSE 138
           L       +  LV+ V    + G P  P W+ ++P  G   +  W     +  +  I  +
Sbjct: 82  LATTLADNISSLVAGVTHVLEQGPPAPPDWVRELPIAGEGLATYWEGLAHNAPAFTIELK 141

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             +           A   G +F    L +   I   FF +  G  ++     + E +  A
Sbjct: 142 KVIGP-----FADVALIGGTLFGAGLLELALSIFIGFFLFLHGRRMTALTRQIAERVAGA 196

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             +++  +V   +     G+   A+ +GL+ G  +W+AGVP  + LG +T +++ +P G 
Sbjct: 197 RARRLLSVVGVTVTGVVYGLIGTALAQGLLAGVGFWIAGVPQALLLGCLTFVLSFVPAGP 256

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P  +  V+++L ++ +++    + +WG + +  +D  LRP+L+G    LP L   FGL+G
Sbjct: 257 PFVWGPVALWLFMQESVWWGIFVAIWGLLLVSSIDNFLRPYLLGRNTNLPVLLGLFGLIG 316

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           GV   GL+GLF+GP L+A+   +++E I A  E + +  S+
Sbjct: 317 GVLAFGLIGLFLGPTLLAVAHSLFREWIAAELEERRQPPSS 357


>gi|307730302|ref|YP_003907526.1| hypothetical protein BC1003_2282 [Burkholderia sp. CCGE1003]
 gi|307584837|gb|ADN58235.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1003]
          Length = 371

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 74/355 (20%), Positives = 150/355 (42%), Gaps = 7/355 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+   L  +    + ++ ++  SL  L  F   +L   I+ ++SW +Y    +       
Sbjct: 1   MKSDQLIERLAAVFALIILVGGSLLVLAPFTTALLWGAILSYSSWGLYRRLTAAVGGRRR 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMW 118
           + A +    ++ + + P ++  +     + ++++ V    + G+P +P W++ IP  G  
Sbjct: 61  WAATLMVFVILIVVLGPFVYAGFAFGAHVHDIIALVQRLFEAGLPDLPPWVARIPVVGSS 120

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
               W    S    L     T     G   +        +        +   I+  FFFY
Sbjct: 121 IQSFWETATSSNSELIAQLRTLAAPAGKWIL-----SAAIAVTHGLGLLALSIVLAFFFY 175

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
             G      L++    +       +  +    ++    G+   A+ +G++ G   W+AGV
Sbjct: 176 TGGEGAGAWLNAGMRRIAGERADYLLALAGSTVKGVVYGILGTALVQGVLAGFGCWIAGV 235

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P+   LG+ T  +++IPGG  I +   +I+L   G    A  L +WG + + + D  ++P
Sbjct: 236 PAPALLGLATFFLSVIPGGPVIVWLPAAIWLYHGGATGWAIFLVVWGVLVVGMSDNVIKP 295

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L+G    +P +    G++GG    G LG+FIGP L+A+   +  +  +    ++
Sbjct: 296 ILIGKNSDMPLILVMLGILGGAFAFGFLGVFIGPTLLAVAYTVLHDWTIGAPASR 350


>gi|242239096|ref|YP_002987277.1| inner membrane protein [Dickeya dadantii Ech703]
 gi|242131153|gb|ACS85455.1| protein of unknown function UPF0118 [Dickeya dadantii Ech703]
          Length = 364

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 69/340 (20%), Positives = 132/340 (38%), Gaps = 6/340 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             I  +I+   + ++ F      A ++   +WP+     S          ++ TV ++  
Sbjct: 19  LFIGILIIACFWVVQPFILGFAWASMVVIATWPLLIKLQSMLWGYRFLAVIVMTVLLVLF 78

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           F++P   L    +     L++      +   P   WL  IP  G      W   +    +
Sbjct: 79  FVIPTSILVSSVIDNTSTLIAWAGSQERITPPSLDWLRSIPMFGEKLHSSWYGLVHSGGA 138

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F I+     Y  G  ++  +    
Sbjct: 139 AVMAKVQPYVGQAASWAVAQAAHIGRFLMHCALMVLFSIL----LYSKGDQVALGVRRFA 194

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L     +    +  + IR+  LG+ + AI + L+ G    L+G+P    L V+  +  
Sbjct: 195 MRLGKQGGEAAVILAAQSIRAVALGVVVTAIVQSLLGGIGLALSGIPYTTLLTVLMFLSC 254

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +   G  +      I+L   G+    T L +W  I +  +D  +RP L+     LP L  
Sbjct: 255 VAQLGPLMVLVPAIIWLYWTGDTTWGTILLVWSCI-VGTLDNVIRPLLIRMGADLPMLLI 313

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             G++GG+   G++GLFIGPV++A+   +    +    E+
Sbjct: 314 LSGVIGGLLAFGMIGLFIGPVVLAVSYRLLSAWMKDTPES 353


>gi|260564563|ref|ZP_05835048.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|265989779|ref|ZP_06102336.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260152206|gb|EEW87299.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|263000448|gb|EEZ13138.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 354

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 77/351 (21%), Positives = 150/351 (42%), Gaps = 5/351 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     ++  + +   + L  ++  VL A+I+    +P+    +          A 
Sbjct: 3   MSVQRASFYILLTLVTIAFAWLLIPYYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAF 62

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ-HGIPVPRWLSDIPGGMWASELW 123
           ++ +  +CL I+P+L +F   + E   L  ++          + R ++ +P      E  
Sbjct: 63  LSVLMCICLVIIPMLAIFGSLVDEGTSLYQRLSSREFGINGYIARIMAALPES--LEEWL 120

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +      +      + +   G          FG   L + +    M+  LFF +RDG  
Sbjct: 121 KRFELGTFADWRARISSVVMQGSQLFAARLVSFGQNTLQFFIGFGIMLYLLFFLFRDGAD 180

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + +++      L   Y ++       VIR+T  G  IIAI +G++ G  +WL G+ + + 
Sbjct: 181 VGKKIRRAIP-LSDDYTRQFLEKFTAVIRATVKGNIIIAIIQGMIGGITFWLLGIEAALL 239

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            GVI    +M+P  GA + +T  +++  + G+ ++   L + G + + +VD  LRP LVG
Sbjct: 240 WGVIMTFCSMLPAVGAALVWTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLVG 299

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              ++P        VGG+  +G+ G  IGP++ A+    W       K+  
Sbjct: 300 KGTRMPDYVVLISTVGGISLIGINGFVIGPLIAAMFIAAWSLLAEEQKDQH 350


>gi|294636262|ref|ZP_06714670.1| putative membrane protein [Edwardsiella tarda ATCC 23685]
 gi|291090449|gb|EFE23010.1| putative membrane protein [Edwardsiella tarda ATCC 23685]
          Length = 368

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 64/339 (18%), Positives = 131/339 (38%), Gaps = 6/339 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             I  +++  L+ ++ F      A ++   +WP+                ++ T+ ++ L
Sbjct: 21  LFIALLLISCLWVVQPFILGFTWASMVVIATWPVLVWLQRHLWGKRWLAVLLMTLLLLLL 80

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           F++P+  +    +     ++     A    +P   WL  +P            L    +L
Sbjct: 81  FVIPIGMVIASLITNAGPILDWAANARNWQMPQLEWLQTLPLVGEKLYASWHGLMSEGAL 140

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
               + ++      F+   A+  G  FL   L ++F  +     Y  G  ++  +     
Sbjct: 141 MAKIQPYIGQAITWFV-TQAAHVGGFFLHCSLMLLFSAL----LYSRGEDVALGIRHFAI 195

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            L          +  + IR+  LG+ + A+ + L+ G    ++G+   V L V+  +  +
Sbjct: 196 RLAAERGDAAVILGGQAIRAVALGVVVTALAQSLLAGIGLAVSGIHYAVLLTVVMFVCCL 255

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
              G  +       +L   G+    T L +W    +  +D  LRP L+     LP L   
Sbjct: 256 AQLGPLLVLLPAVGWLYWSGDTTWGTLLLVWSG-VVGTMDNVLRPALIRMGADLPMLLVL 314

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            G++GG+   G++GLFIGPV++A+   +    +      
Sbjct: 315 SGVIGGLLAFGMIGLFIGPVVLAVSYRLVSAWVNEAPPP 353


>gi|161521467|ref|YP_001584894.1| hypothetical protein Bmul_4931 [Burkholderia multivorans ATCC
           17616]
 gi|160345517|gb|ABX18602.1| protein of unknown function UPF0118 [Burkholderia multivorans ATCC
           17616]
          Length = 353

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 69/347 (19%), Positives = 142/347 (40%), Gaps = 5/347 (1%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + Q    +++  + +   + L  FF  V    I+     P+     ++  +     A++ 
Sbjct: 9   DHQKFFYFLLFAVTVGLCWVLAPFFGAVFWGTILAILFQPVQRWLAARFGKRRNLAALLT 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWASELWTK 125
              ++ + I+PL+F+    + E+  +  ++  A  +        +  +P  +        
Sbjct: 69  LTLIILIVILPLVFVTATLVQEIAYVYQELKDAQPNYSKYFQDVIHALPTSVQHLLAKYG 128

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             + P   K L++     +            G     + +S   M+  +FF  RDG  I 
Sbjct: 129 LTNIPGIQKKLTDGAAAISQFAAAQAL--SIGQNTFQFIVSFGVMLYMVFFLLRDGGEIG 186

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +++      L   +   +      V+R+T  G   +A+ +G++ G  +W+ G+   V  G
Sbjct: 187 RRVRRALP-LDEEHKNLLLAKFTTVVRATVKGNIAVALVQGILGGLIFWILGIQGVVLWG 245

Query: 246 VITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            + A ++++P  GA + +   ++Y L  G ++    L  +    + +VD  LRP LVG  
Sbjct: 246 ALMAFLSLLPAIGASLVWVPAALYFLATGAVWKCVILVAFCVGVIGLVDNLLRPILVGKD 305

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            K+P        +GG+   G+ G  IGP++ AL    W     A +E
Sbjct: 306 TKMPDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIYARAEQE 352


>gi|16262687|ref|NP_435480.1| hypothetical protein SMa0447 [Sinorhizobium meliloti 1021]
 gi|14523310|gb|AAK64892.1| conserved hypothetical protein [Sinorhizobium meliloti 1021]
          Length = 373

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 88/341 (25%), Positives = 158/341 (46%), Gaps = 7/341 (2%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           +     L  F + +L A +I F++WP Y  F           A   TV V+ + + PL  
Sbjct: 24  IGCTLVLWPFLSAILWAAVICFSTWPAYRLFERAVGGYRALAAAAMTVLVVVVIVAPLAL 83

Query: 81  LFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSE 138
           L       +  LV+ V    + G P  P W+  +P  G   +  W     +  +  I  +
Sbjct: 84  LATTLADNISSLVAGVTHVLEQGPPAPPDWVRGLPIAGEGLATYWEGLAHNAPAFTIELK 143

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             +           A   G +F    L +   I   FF +  G  ++     + E +  A
Sbjct: 144 KVIGP-----FADVALIGGTLFGAGLLELALSIFIGFFLFLHGRRMTALTRQIAERVAGA 198

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             +++  +V   +     G+   A+ +GL+ G  +W+AGVP  + LG +T +++ +P G 
Sbjct: 199 RARRLLSVVGVTVTGVVYGLIGTALAQGLLAGVGFWIAGVPQALLLGCLTFVLSFVPAGP 258

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P  +  V+++L ++ +++    + +WG + +  +D  LRP+L+G    LP L   FGL+G
Sbjct: 259 PFVWGPVALWLFMQESVWWGIFVAIWGLLLVSSIDNFLRPYLLGRNTNLPVLLGLFGLIG 318

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           GV   GL+GLF+GP L+A+   +++E I A  E + +  S+
Sbjct: 319 GVLAFGLIGLFLGPTLLAVAHSLFREWIAAELEERRQPPSS 359


>gi|120555336|ref|YP_959687.1| hypothetical protein Maqu_2425 [Marinobacter aquaeolei VT8]
 gi|120325185|gb|ABM19500.1| protein of unknown function UPF0118 [Marinobacter aquaeolei VT8]
          Length = 363

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 79/351 (22%), Positives = 144/351 (41%), Gaps = 5/351 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
                M++ + L  +  +K FF P+  A+ I     P+    + +  +  T  A+I    
Sbjct: 8   RTFLAMLLGVSLAFILLMKPFFGPIFWAVAIALIFHPVQQLLVRRLGDRPTLNALITLFV 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            M + ++P+L L    + E   +  K+       I    ++  +     A + +      
Sbjct: 68  CMVIVVIPVLVLGAALIAEGMGIYQKIQAGE---IRPGEYIDQVNQSFPAIQAFLAQFDI 124

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             +            G  F+ + A   G     + L +  M+   FF  RDG  + + + 
Sbjct: 125 NFADLRDRAVNAFLGGSQFLAKQALGIGQNTFQFFLGLALMVYLAFFLIRDGQKLIELMI 184

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                L     + +     +V R+T  G  +IAI +G + G  +W+ G+   +  GV+ A
Sbjct: 185 RALP-LGDERERLLFAKFAEVTRATVKGNLLIAIIQGALGGMIFWILGITGALLWGVVMA 243

Query: 250 IMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I++++P  GA I +   +IYL   G+I  A  L  +G + + + D  LRP LVG   K+P
Sbjct: 244 IVSLLPAVGAAIVWVPAAIYLAAVGDIVPAIILTAYGVVVIGLADNLLRPVLVGRDTKMP 303

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                   +GG+   G+ G  +GP++ AL    W   I    +      +N
Sbjct: 304 DYLVLLSTLGGIVMFGINGFVMGPLVAALFMAFWGIFIREFGQYHYADPAN 354


>gi|189352364|ref|YP_001947991.1| putative permease [Burkholderia multivorans ATCC 17616]
 gi|221210990|ref|ZP_03583970.1| conserved hypothetical protein [Burkholderia multivorans CGD1]
 gi|189336386|dbj|BAG45455.1| putative permease [Burkholderia multivorans ATCC 17616]
 gi|221169946|gb|EEE02413.1| conserved hypothetical protein [Burkholderia multivorans CGD1]
          Length = 350

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 69/347 (19%), Positives = 142/347 (40%), Gaps = 5/347 (1%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + Q    +++  + +   + L  FF  V    I+     P+     ++  +     A++ 
Sbjct: 6   DHQKFFYFLLFAVTVGLCWVLAPFFGAVFWGTILAILFQPVQRWLAARFGKRRNLAALLT 65

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWASELWTK 125
              ++ + I+PL+F+    + E+  +  ++  A  +        +  +P  +        
Sbjct: 66  LTLIILIVILPLVFVTATLVQEIAYVYQELKDAQPNYSKYFQDVIHALPTSVQHLLAKYG 125

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             + P   K L++     +            G     + +S   M+  +FF  RDG  I 
Sbjct: 126 LTNIPGIQKKLTDGAAAISQFAAAQAL--SIGQNTFQFIVSFGVMLYMVFFLLRDGGEIG 183

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +++      L   +   +      V+R+T  G   +A+ +G++ G  +W+ G+   V  G
Sbjct: 184 RRVRRALP-LDEEHKNLLLAKFTTVVRATVKGNIAVALVQGILGGLIFWILGIQGVVLWG 242

Query: 246 VITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            + A ++++P  GA + +   ++Y L  G ++    L  +    + +VD  LRP LVG  
Sbjct: 243 ALMAFLSLLPAIGASLVWVPAALYFLATGAVWKCVILVAFCVGVIGLVDNLLRPILVGKD 302

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            K+P        +GG+   G+ G  IGP++ AL    W     A +E
Sbjct: 303 TKMPDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIYARAEQE 349


>gi|329908669|ref|ZP_08274912.1| hypothetical protein IMCC9480_3662 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546658|gb|EGF31619.1| hypothetical protein IMCC9480_3662 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 352

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 74/337 (21%), Positives = 142/337 (42%), Gaps = 5/337 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q    +++  + L   + L  F   V  A ++     P++   +++  +  T  A+   
Sbjct: 7   HQKFFLFLLAAVTLAFGWILLPFIGAVFWAAVLALLFAPLHRRLLNRFGQRHTLSALATL 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKH 126
           + V+ + I+PL  +      E   +  K+   +   G    + L+ +P   W      + 
Sbjct: 67  MVVLFIVILPLTLIGVSLAQEGTLVYHKIRTGSLDFGTYFQQILAALP--QWLVTQLQRV 124

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                +      + +   G   I            D+ +    M+  LFF  RDG ++S 
Sbjct: 125 GMADFTELQDKVSQVIRQGSQTIASQVLNITQNTFDFVIGFGMMLYLLFFLLRDGAALSA 184

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           ++      L     K++      VIR+T  G  ++A  +G + G  +W  G+   +  GV
Sbjct: 185 RIRHAIP-LEREQKKQLVAKFATVIRATVKGNIVVAASQGTLGGLMFWFLGIQGALLWGV 243

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           + A+++++P  GA + +  V+IY L+ G I+    L  +G + + +VD  LRP LVG   
Sbjct: 244 LMAVLSLLPAIGAALIWGPVAIYFLLTGAIWQGVTLIAFGVLVIGLVDNILRPVLVGKDT 303

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           ++P        +GG+   GL G  +GP + A+    W
Sbjct: 304 QMPDYVVLISTIGGISVFGLSGFVVGPSIAAMFMAAW 340


>gi|85710071|ref|ZP_01041136.1| membrane protein, putative [Erythrobacter sp. NAP1]
 gi|85688781|gb|EAQ28785.1| membrane protein, putative [Erythrobacter sp. NAP1]
          Length = 400

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 72/348 (20%), Positives = 143/348 (41%), Gaps = 3/348 (0%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
              ++  + ++ ++    F  PV+ A +      P+Y   ++K        A ++ + + 
Sbjct: 28  FLLILAVVSILFVWVTWPFVGPVMWAALAAIMFQPLYKWSLTKTRGRRNIAASLSLLIIF 87

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              ++P L++    + E   +++ +             +  I              ++  
Sbjct: 88  VAVLLPALWIGSLVLDEAVGVINALQANPIDIAQTVNSIFSILPDSLQRMALENGWTNVS 147

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            ++   E+ L  +    I + A   G   L + LS    +  LFF  RDG  I + +   
Sbjct: 148 VMQDRLESLLGESA-GLIAQSAVSIGSGALGFFLSFGIGLYVLFFLLRDGSRIGETILHS 206

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              +      +++     ++R+   G  ++ + +G + G    LAGVPS + LGV+ AI+
Sbjct: 207 AP-IEREIADRLADRFLGIVRAVIKGSGVVGLVQGTLGGIMLALAGVPSALLLGVLMAIL 265

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           A+IP  G  + +    I+L+I G ++    +   G I +  VD  LRP LVG    +P  
Sbjct: 266 ALIPAVGTALVWAPAGIWLIIAGEVWTGAFVLAAGTIVIASVDNVLRPILVGRDTGIPDW 325

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                 +GG+   G  G+ +GP++  L    W        E++E I+ 
Sbjct: 326 IVLVTTLGGISLAGFSGIVLGPLVAGLFLASWSILQEQRAEDEEAIAK 373


>gi|221197138|ref|ZP_03570185.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
 gi|221203811|ref|ZP_03576829.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gi|221175977|gb|EEE08406.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gi|221183692|gb|EEE16092.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
          Length = 350

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 69/347 (19%), Positives = 142/347 (40%), Gaps = 5/347 (1%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + Q    +++  + +   + L  FF  V    I+     P+     ++  +     A++ 
Sbjct: 6   DHQKFFYFLLFAVTVGLCWVLAPFFGAVFWGTILAILFQPVQRWLAARFGKRRNLAALLT 65

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWASELWTK 125
              ++ + I+PL+F+    + E+  +  ++  A  +        +  +P  +        
Sbjct: 66  LTLIILIVILPLVFVTATLVQEIAYVYQELKDAQPNYSKYFQDVIHALPTSIQHLLAKYG 125

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             + P   K L++     +            G     + +S   M+  +FF  RDG  I 
Sbjct: 126 LTNIPGIQKKLTDGAAAISQFAAAQAL--SIGQNTFQFIVSFGVMLYMVFFLLRDGGEIG 183

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +++      L   +   +      V+R+T  G   +A+ +G++ G  +W+ G+   V  G
Sbjct: 184 RRVRRALP-LDEEHKNLLLAKFTTVVRATVKGNIAVALVQGILGGLIFWILGIQGVVLWG 242

Query: 246 VITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            + A ++++P  GA + +   ++Y L  G ++    L  +    + +VD  LRP LVG  
Sbjct: 243 ALMAFLSLLPAIGASLVWVPAALYFLATGAVWKCVILVAFCVGVIGLVDNLLRPILVGKD 302

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            K+P        +GG+   G+ G  IGP++ AL    W     A +E
Sbjct: 303 TKMPDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIYARAEQE 349


>gi|145300900|ref|YP_001143741.1| permease [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853672|gb|ABO91993.1| putative permease [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 362

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 72/357 (20%), Positives = 144/357 (40%), Gaps = 6/357 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M++  L    +    +  +I+     L+ F   ++ A +I   +WP+             
Sbjct: 3   MKKVDLAKITLGVLFLSILIISCFMVLRPFLPALVWATMITIATWPLMRMVQRLLWGKRM 62

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWA 119
             A+  T+ ++ +F++PL         +   L+      +    P   WL  IP  G   
Sbjct: 63  LAALFMTLVLLLMFVIPLFMALANVAEQAPMLIELGTTISHSPPPELLWLQQIPLVGTKL 122

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            E W + L+    +              ++   A   G++F+ + L++    +     Y 
Sbjct: 123 YEFWQQILASGGQVLFTKLAPYFGQTARWLASQAGNLGLLFVHFLLTVGICGV----LYH 178

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G  ++  +      L        + +  + IR+  +G+ + A+ +  V G    +AG+P
Sbjct: 179 SGEMVATGIRRFAHRLAGERGDNATVLASQAIRAVAMGVVVTALVQSSVAGIGLLIAGIP 238

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             + L V+  ++ +   G      A   YL   G+    T L +W  +    +D  LRPF
Sbjct: 239 YTMVLVVVMFLLIVAQIGPFPVLLACIGYLYWSGDTTWGTFLLVWS-LFAGTMDNILRPF 297

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           L+     LP +    G++GG+ TMG++GLFIGPV++A+   +    +   ++   + 
Sbjct: 298 LIKRGADLPLILILVGVIGGLLTMGIIGLFIGPVVLAVGYTLLDAWVREDEQAAAEP 354


>gi|194292237|ref|YP_002008144.1| transmembrane protein [Cupriavidus taiwanensis LMG 19424]
 gi|193226141|emb|CAQ72088.1| putative transmembrane protein [Cupriavidus taiwanensis LMG 19424]
          Length = 348

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 69/341 (20%), Positives = 139/341 (40%), Gaps = 5/341 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +++ + +  ++ L  F++ +L   I+     P++     +        A+   +  + +
Sbjct: 9   ILLVAVTIAFIWILLPFYSAILWGTILAILFHPMHRKLTVRFGNRENLAALATLLVCVLM 68

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
            I+P+  +      E      ++       G      +  +P          +      +
Sbjct: 69  AIIPVFLMIATLAQEAAFAYQQIRTGKWDFGQYFQTAVQALPAS--VEAWLNEMGLADVA 126

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                 T        F+   A   G   L + + +  M+  +FF  RDG  IS +     
Sbjct: 127 GLQAKLTEGAARISQFMAAQAVAIGQNTLQFAVGLGVMLYLVFFLLRDGAMISHRFRE-A 185

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L  A+ +++      V+R+T  G  ++A  +G++ G A+ L G+   +  G + A ++
Sbjct: 186 MPLSDAHTRRLVGRFTTVVRATVKGNVVVAAVQGILGGLAFLLLGINGALLWGTLMAFLS 245

Query: 253 MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++P  GA + +   +IY L+ G  +    L   G + +  VD  LRP LVG   KLP   
Sbjct: 246 LLPAVGAALVWGPAAIYFLLAGPAWKGIALIAIGTLVIGAVDNVLRPILVGKDTKLPDWV 305

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
                +GG+   G+ G  IGP++ AL    W  S++  +++
Sbjct: 306 VLISTLGGMSVFGINGFVIGPLIAALFMSCWHMSVIEDRDD 346


>gi|91778406|ref|YP_553614.1| hypothetical protein Bxe_B1702 [Burkholderia xenovorans LB400]
 gi|91691066|gb|ABE34264.1| putative membrane protein [Burkholderia xenovorans LB400]
          Length = 360

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 92/346 (26%), Positives = 172/346 (49%), Gaps = 7/346 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEESSTFL 62
           +   +     + + ++L++L+ ++ F A V  A +I    WP+             +T +
Sbjct: 19  LKKQKTASLALYIGLVLLALWVVRDFIAVVAWAGVIAIALWPLLRKVEGNRWFTGRTTLI 78

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-MWASE 121
           A + T+ +  L ++P+       + E  +L        ++GIP+P ++  +P G    S 
Sbjct: 79  AAVLTLLIALLVVLPVGIGIAQALREAHDLNEWFKTVQENGIPLPDFVQHLPFGVQQIST 138

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            W  +L+ P    +     +K      +      FG   +       FM++ LF  ++ G
Sbjct: 139 WWQANLTQP----LRESAAMKGLHSPAVVTLGRHFGARAVHAVTVFAFMLVTLFVIFQAG 194

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +S  L       F     ++ + +   +R T  G+ ++ +GEG +LG AY++ G+P  
Sbjct: 195 PRLSGALLKGMRRGFGDDGAQLLQRMAAAVRGTVSGLVVVGLGEGALLGVAYFVTGLPHV 254

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             L  +TAI AM+P  AP++F   +++LL +G++  A  L ++GA+ +F+ +  +RP L+
Sbjct: 255 ALLAFVTAIAAMLPFCAPLTFGIAALWLLSQGSVAAAIGLAVFGAVVVFVAEHFVRPVLI 314

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           G   +LPFL   FG++GG  T GLLG+FIGP LM ++ V+W + + 
Sbjct: 315 GNSTRLPFLLVLFGILGGAETFGLLGIFIGPALMTVLMVLWTDLVQ 360


>gi|256059328|ref|ZP_05449530.1| hypothetical protein Bneo5_03088 [Brucella neotomae 5K33]
          Length = 352

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 75/352 (21%), Positives = 149/352 (42%), Gaps = 7/352 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     ++  + +   + L  ++  VL A+I+    +P+    +          A 
Sbjct: 1   MSVQRASFYILLTLVTIAFAWLLIPYYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAF 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW--ASEL 122
           ++ +  +CL I+P+L +F   + E   L  ++         +  +++ I   +     E 
Sbjct: 61  LSVLMCICLVIIPMLAIFGSLVDEGTSLYQRLSSRE---FDINGYIARIMAALPESLEEW 117

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             +      +      + +   G          FG   L + +    M+  LFF +RDG 
Sbjct: 118 LKRFELGTFADWRARISSVVMQGSQLFAARLVSFGQNTLQFFIGFGIMLYLLFFLFRDGA 177

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + +++      L   Y ++       VIR+T  G  IIAI +G++ G  +WL G+ + +
Sbjct: 178 DVGKKIRRAIP-LSDDYTRQFLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAAL 236

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             GVI    +M+P  GA + +T  +++  + G+ ++   L + G + + +VD  LR  LV
Sbjct: 237 LWGVIMTFCSMLPAVGAALVWTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRLPLV 296

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G   ++P        VGG+  +G+ G  IGP++ A+    W       K+  
Sbjct: 297 GKGTRMPDYVVLISTVGGISLIGINGFVIGPLIAAMFIAAWSLLAEEQKDQH 348


>gi|119387710|ref|YP_918744.1| hypothetical protein Pden_4988 [Paracoccus denitrificans PD1222]
 gi|119378285|gb|ABL73048.1| protein of unknown function UPF0118 [Paracoccus denitrificans
           PD1222]
          Length = 347

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 65/330 (19%), Positives = 137/330 (41%), Gaps = 3/330 (0%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +++   +  ++ +  F+  VL A+I+     P++              A+++ ++ + +
Sbjct: 13  AVVLITTVALIWVVLPFYGGVLWAVILAILFSPLHDRLEHVLGGRRNLAALLSVLACIFI 72

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            ++P   +      +   +   V         V   +           L   +L   + +
Sbjct: 73  VVIPATLILGALARQATSVYQSVSSQEPDLAAVMDQVRGAMPSFVLDALSAMNLGSFEEI 132

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           +    +F+      FI   A   G     + + +  M+  LFF +RDG  +   + +   
Sbjct: 133 QSRLVSFVGQAA-QFIASRAMVIGQGAAQFSIGLGVMLYVLFFLFRDGRGLVGSISAASP 191

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            L   + + I +    V+++T  G  +IA  +G + G  +WL G+ + +  GVI  ++++
Sbjct: 192 -LSAPHTRHIMQKFVDVVKATVTGNVVIATIQGTIGGVTFWLVGIEAALLCGVIMGVLSL 250

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +P  GA + +   ++Y LI G       +   G + +  +D  LRP LVG    LP    
Sbjct: 251 LPAVGAFLVWLPFAVYYLITGAYLKGIVIMAVGVLVISTIDNLLRPPLVGRRSSLPDYVV 310

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
               +GG+  MG+ G  +GP++ A    +W
Sbjct: 311 LVSTLGGISQMGMNGFVVGPLIAAFFIAVW 340


>gi|222111100|ref|YP_002553364.1| hypothetical protein Dtpsy_1907 [Acidovorax ebreus TPSY]
 gi|221730544|gb|ACM33364.1| protein of unknown function UPF0118 [Acidovorax ebreus TPSY]
          Length = 352

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 73/334 (21%), Positives = 132/334 (39%), Gaps = 5/334 (1%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
                L      +   +++     P++     +        A+      + + I+P+  +
Sbjct: 21  AFGAILWPLNGAIFWGVVLAILFTPLHRRLQRRMPRRRNLAALATLGVCLVIVILPVTLI 80

Query: 82  FYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
               + E      +        G  + + L+ +P   W  EL  +     ++      T 
Sbjct: 81  GASLVQEASVAYERARSGQLNFGAYLQQVLAALP--PWMLELLDRFHLTTRAELQARLTT 138

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           +      F+   A   G   L + +S   M+  LFF  RDG  ++ ++      L   + 
Sbjct: 139 IGAQASQFLATKALDVGQNTLQFVVSFGVMLYLLFFLLRDGARLAARIREAIP-LDARHK 197

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAP 259
           ++++     VIR+T  G  ++A  +G + G  +WL  +   V  GV+ A ++++P  GA 
Sbjct: 198 EQLAIKFTTVIRATVKGNIVVAAAQGALGGLIFWLLNIQGPVMWGVLMAFLSLLPAVGAS 257

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +  V+IY L  G    A  L  +G   + +VD  LRP LVG   KLP        +GG
Sbjct: 258 LIWGPVAIYFLATGAPGQAVILTAYGVFVIGLVDNVLRPVLVGKDTKLPDYVVLISTLGG 317

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +   GL G  IGP++ AL    W          +
Sbjct: 318 MALFGLTGFVIGPMIAALFIATWDLFAPHDGSER 351


>gi|15802100|ref|NP_288122.1| putative inner membrane protein [Escherichia coli O157:H7 EDL933]
 gi|15831649|ref|NP_310422.1| inner membrane protein [Escherichia coli O157:H7 str. Sakai]
 gi|168751901|ref|ZP_02776923.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4113]
 gi|168756686|ref|ZP_02781693.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4401]
 gi|168762251|ref|ZP_02787258.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4501]
 gi|168770447|ref|ZP_02795454.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4486]
 gi|168775015|ref|ZP_02800022.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4196]
 gi|168782100|ref|ZP_02807107.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4076]
 gi|168789822|ref|ZP_02814829.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC869]
 gi|168800134|ref|ZP_02825141.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC508]
 gi|195937372|ref|ZP_03082754.1| putative inner membrane protein [Escherichia coli O157:H7 str.
           EC4024]
 gi|208810488|ref|ZP_03252364.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4206]
 gi|208816562|ref|ZP_03257682.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4045]
 gi|208820705|ref|ZP_03261025.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4042]
 gi|209397418|ref|YP_002270757.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4115]
 gi|217328985|ref|ZP_03445066.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. TW14588]
 gi|254793305|ref|YP_003078142.1| putative inner membrane protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|261227867|ref|ZP_05942148.1| putative inner membrane protein [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261258399|ref|ZP_05950932.1| putative inner membrane protein [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291282818|ref|YP_003499636.1| Inner membrane protein YdiK [Escherichia coli O55:H7 str. CB9615]
 gi|12515693|gb|AAG56675.1|AE005392_1 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13361862|dbj|BAB35818.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187769380|gb|EDU33224.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4196]
 gi|188014138|gb|EDU52260.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4113]
 gi|189000250|gb|EDU69236.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4076]
 gi|189356127|gb|EDU74546.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4401]
 gi|189360631|gb|EDU79050.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4486]
 gi|189367449|gb|EDU85865.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4501]
 gi|189370582|gb|EDU88998.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC869]
 gi|189377566|gb|EDU95982.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC508]
 gi|208725004|gb|EDZ74711.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4206]
 gi|208730905|gb|EDZ79594.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4045]
 gi|208740828|gb|EDZ88510.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4042]
 gi|209158818|gb|ACI36251.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4115]
 gi|209769108|gb|ACI82866.1| hypothetical protein ECs2395 [Escherichia coli]
 gi|209769110|gb|ACI82867.1| hypothetical protein ECs2395 [Escherichia coli]
 gi|209769112|gb|ACI82868.1| hypothetical protein ECs2395 [Escherichia coli]
 gi|209769114|gb|ACI82869.1| hypothetical protein ECs2395 [Escherichia coli]
 gi|209769116|gb|ACI82870.1| hypothetical protein ECs2395 [Escherichia coli]
 gi|217318332|gb|EEC26759.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. TW14588]
 gi|254592705|gb|ACT72066.1| predicted inner membrane protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|290762691|gb|ADD56652.1| Inner membrane protein YdiK [Escherichia coli O55:H7 str. CB9615]
 gi|320188374|gb|EFW63036.1| Putative membrane protein [Escherichia coli O157:H7 str. EC1212]
 gi|320641903|gb|EFX11271.1| putative inner membrane protein [Escherichia coli O157:H7 str.
           G5101]
 gi|320647359|gb|EFX16167.1| putative inner membrane protein [Escherichia coli O157:H- str.
           493-89]
 gi|320652653|gb|EFX20922.1| putative inner membrane protein [Escherichia coli O157:H- str. H
           2687]
 gi|320653038|gb|EFX21234.1| putative inner membrane protein [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320658722|gb|EFX26399.1| putative inner membrane protein [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320668712|gb|EFX35517.1| putative inner membrane protein [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326342053|gb|EGD65834.1| Putative membrane protein [Escherichia coli O157:H7 str. 1044]
 gi|326343605|gb|EGD67367.1| Putative membrane protein [Escherichia coli O157:H7 str. 1125]
          Length = 370

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 66/344 (19%), Positives = 137/344 (39%), Gaps = 7/344 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +
Sbjct: 18  LFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMV 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQS 132
           FI+P+  L    +     L+ K + +    +P   WL+ IP  G      W   L    +
Sbjct: 78  FIIPIALLVNSIVDGSGPLI-KAISSGDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGT 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  ++Q +    
Sbjct: 137 AIMAKVRPYIGTTTTWFVGQAAHIGRFMVHCALMLLFSAL----LYWRGEQVAQGIRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  
Sbjct: 193 TRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G+    T L +W    +  +D  +RP L+     LP +  
Sbjct: 253 LVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSG-VVGTLDNVIRPMLIRMGADLPLILI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
             G++GG+   G++GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQP 355


>gi|194434783|ref|ZP_03067033.1| inner membrane protein YdiK [Shigella dysenteriae 1012]
 gi|194416952|gb|EDX33071.1| inner membrane protein YdiK [Shigella dysenteriae 1012]
 gi|332093944|gb|EGI98997.1| hypothetical protein SD15574_1835 [Shigella dysenteriae 155-74]
          Length = 370

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 66/344 (19%), Positives = 137/344 (39%), Gaps = 7/344 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +
Sbjct: 18  LFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMV 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQS 132
           FI+P+  L    +     L+ K + +    +P   WL+ IP  G      W   L    +
Sbjct: 78  FIIPIALLVNSIVDGSGPLI-KAISSGDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGT 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  ++Q +    
Sbjct: 137 AIMAKVRPYIGTTTTWFVGQAAHIGRFMVHCALMLLFSAL----LYWRGEQVAQGIRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  
Sbjct: 193 TRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G+    T L +W    +  +D  +RP L+     LP +  
Sbjct: 253 LVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSG-VVGTLDNVIRPMLIRMGADLPLILI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
             G++GG+   G++GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVLLAVSWRLFATWVEEVPPPTDQP 355


>gi|215486863|ref|YP_002329294.1| putative inner membrane protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215264935|emb|CAS09321.1| predicted inner membrane protein [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 370

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 66/344 (19%), Positives = 136/344 (39%), Gaps = 7/344 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +
Sbjct: 18  LFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMV 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQS 132
           FI+P+  L    +     L+ K + +    +P   WL  IP  G      W   L    +
Sbjct: 78  FIIPIALLVNSIVDGSGPLI-KAISSGDMTLPDLAWLKTIPVIGTKLYAGWHNLLDMGGT 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  ++Q +    
Sbjct: 137 AIMAKVRPYIGTTTTWFVGQAAHIGRFMVHCALMLLFSAL----LYWRGEQVAQGIRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  
Sbjct: 193 TRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G+    T L +W    +  +D  +RP L+     LP +  
Sbjct: 253 LVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSG-VVGTLDNVIRPMLIRMGADLPLILI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
             G++GG+   G++GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQP 355


>gi|312966841|ref|ZP_07781059.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|312288305|gb|EFR16207.1| conserved hypothetical protein [Escherichia coli 2362-75]
          Length = 370

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 66/344 (19%), Positives = 136/344 (39%), Gaps = 7/344 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +
Sbjct: 18  LFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMV 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQS 132
           FI+P+  L    +     L+ K + +    +P   WL  IP  G      W   L    +
Sbjct: 78  FIIPIALLVNSIVDGSGPLI-KAISSGDMTLPDLAWLKTIPVIGTKLYAGWHNLLDMGGT 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  ++Q +    
Sbjct: 137 AIMAKVRPYIGTTTTWFVGQAAHIGRFMVHCALMLLFSAL----LYWRGEQVAQGIRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  
Sbjct: 193 TRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G+    T L +W    +  +D  +RP L+     LP +  
Sbjct: 253 LVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSG-VVGTLDNVIRPMLIRMGADLPLILI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
             G++GG+   G++GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQP 355


>gi|85711221|ref|ZP_01042281.1| Predicted permease PerM family protein [Idiomarina baltica OS145]
 gi|85695134|gb|EAQ33072.1| Predicted permease PerM family protein [Idiomarina baltica OS145]
          Length = 348

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 83/348 (23%), Positives = 151/348 (43%), Gaps = 8/348 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  +   R  ++ ++ VS+ F   LK F+A +  A  +    +P+           S   
Sbjct: 1   MQDKLETRSFLLMLLAVSIAFALILKPFWASIFWACAVAVIFYPLQIRLKRMLGRRSNRA 60

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A++  +    + ++P+L + Y  + E  +L  K+   +     +   +    G  +  +L
Sbjct: 61  ALLTLLIATVIVVIPVLLVAYSFIQEGVQLYQKLSSGDVSIAQIVDKIEK--GLPFLPDL 118

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             +     +SL      +   +   F  + A   G     + +++  M+   FF  RDG 
Sbjct: 119 LARLGIDIESLPERISQW-AMSASQFFAQEALVVGQNTFGFVMNLGLMLYLTFFLLRDGN 177

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + + +      L      ++ +   +V R+T  G  ++A+ +G + G  + L G+P+ V
Sbjct: 178 KLIRLMVRALP-LGDEREHQLFKKFAEVTRATVKGNIVVAMVQGALGGVIFALLGIPAPV 236

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             GV+ A +++IP  GA I +  VS+YLL  G  F    L L+G I + + D  LRP LV
Sbjct: 237 LWGVVMAFLSLIPAVGAGIVWLPVSVYLLATGATFEGIVLVLYGLIIIGLADNALRPLLV 296

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           G   KLP     F  +GG+   G+ G  IGP++ AL    W       
Sbjct: 297 GRDTKLPDYVVLFSTLGGLSLFGITGFVIGPLIAALFLAFWDMFTHEF 344


>gi|218558557|ref|YP_002391470.1| inner membrane protein [Escherichia coli S88]
 gi|218365326|emb|CAR03047.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli S88]
          Length = 370

 Score =  205 bits (523), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 66/344 (19%), Positives = 136/344 (39%), Gaps = 7/344 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +
Sbjct: 18  LFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMV 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQS 132
           FI+P+  L    +     L+  +   N   +P   WL+ IP  G      W   L    +
Sbjct: 78  FIIPIALLVNSIVDGSGPLIKAISSGN-MTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGT 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  ++Q +    
Sbjct: 137 AIMAKVRPYIGTTTTWFVGQAAHIGRFMVHCALMLLFSAL----LYWRGEQVAQGIRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  
Sbjct: 193 TRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G+    T L +W    +  +D  +RP L+     LP +  
Sbjct: 253 LVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSG-VVGTLDNVIRPMLIRMGADLPLILI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
             G++GG+   G++GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQP 355


>gi|320175148|gb|EFW50259.1| putative membrane protein [Shigella dysenteriae CDC 74-1112]
          Length = 370

 Score =  205 bits (523), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 66/344 (19%), Positives = 137/344 (39%), Gaps = 7/344 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +
Sbjct: 18  LFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMV 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQS 132
           FI+P+  L    +     L+ K + +    +P   WL+ IP  G      W   L    +
Sbjct: 78  FIIPIALLVNSIVDGSGPLI-KAISSGDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGT 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  ++Q +    
Sbjct: 137 AIMAKVRPYIGTTTTWFVGQAAHIGRFMVHCALMLLFSAL----LYWRGEQVAQGIRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  
Sbjct: 193 TRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G+    T L +W    +  +D  +RP L+     LP +  
Sbjct: 253 LVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSG-VVGTLDNVIRPMLIRMGADLPLILI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
             G++GG+   G++GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQP 355


>gi|58038598|ref|YP_190562.1| putative permease [Gluconobacter oxydans 621H]
 gi|58001012|gb|AAW59906.1| Putative permease [Gluconobacter oxydans 621H]
          Length = 374

 Score =  205 bits (523), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 90/339 (26%), Positives = 169/339 (49%), Gaps = 6/339 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +    ++ +F + + LY LKGF   +L   +   + WP+Y     +    S +L ++ T
Sbjct: 25  QRRARGFLALFFVAIGLYTLKGFLPALLWGCVFAISIWPLYRRTELRF-GRSDWLPMVFT 83

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKH 126
           ++V  +F+VP+  +      E +  +  +     +GIP+P W+  +P     A+  W  H
Sbjct: 84  LAVALIFLVPVSLVGVKVADEARSALEWIDDVRNNGIPMPEWVPHLPFLSAQATNWWQNH 143

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           ++ PQ L  L  +    +G+    +  S+       +  S++ +   L    +DG S+ +
Sbjct: 144 MTSPQRLSHLLHSVDVGHGMQMTKQVGSQLARRGTLFAFSLLTLFFLL----KDGDSVIR 199

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           +     + LF    + +++ +   +  T  G+ ++ +GEG ++G  Y   G P  +   +
Sbjct: 200 KCLLGSQRLFGEQGESLAKQMISSVHGTLAGLVLVGLGEGAIMGIVYMATGAPQPLLFAM 259

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +TA+ AMIP  A  +   V++ LL K ++  A  +   G++ +FI D  +RP L+GG  K
Sbjct: 260 VTAVAAMIPFLAWPTVGLVALLLLAKSSMIGAIVVSAVGSVVIFIADHFIRPALIGGSTK 319

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +PFL    G++GG  T GLLGLF+GP +MA + ++W   
Sbjct: 320 MPFLWVLLGILGGAETWGLLGLFLGPAIMAALHLLWTLW 358


>gi|16129644|ref|NP_416203.1| inner membrane protein, UPF0118 family [Escherichia coli str. K-12
           substr. MG1655]
 gi|24113077|ref|NP_707587.1| putative inner membrane protein [Shigella flexneri 2a str. 301]
 gi|30063202|ref|NP_837373.1| putative inner membrane protein [Shigella flexneri 2a str. 2457T]
 gi|82543942|ref|YP_407889.1| inner membrane protein [Shigella boydii Sb227]
 gi|82776939|ref|YP_403288.1| putative inner membrane protein [Shigella dysenteriae Sd197]
 gi|89108528|ref|AP_002308.1| predicted inner membrane protein [Escherichia coli str. K-12
           substr. W3110]
 gi|91210901|ref|YP_540887.1| putative inner membrane protein [Escherichia coli UTI89]
 gi|110805665|ref|YP_689185.1| putative inner membrane protein [Shigella flexneri 5 str. 8401]
 gi|117623867|ref|YP_852780.1| putative inner membrane protein [Escherichia coli APEC O1]
 gi|157157163|ref|YP_001462982.1| putative inner membrane protein [Escherichia coli E24377A]
 gi|157161153|ref|YP_001458471.1| putative inner membrane protein [Escherichia coli HS]
 gi|170019962|ref|YP_001724916.1| putative inner membrane protein [Escherichia coli ATCC 8739]
 gi|170081348|ref|YP_001730668.1| inner membrane protein [Escherichia coli str. K-12 substr. DH10B]
 gi|187732656|ref|YP_001880447.1| putative inner membrane protein [Shigella boydii CDC 3083-94]
 gi|188492403|ref|ZP_02999673.1| putative membrane protein [Escherichia coli 53638]
 gi|191167867|ref|ZP_03029672.1| inner membrane protein YdiK [Escherichia coli B7A]
 gi|193065271|ref|ZP_03046343.1| inner membrane protein YdiK [Escherichia coli E22]
 gi|193068945|ref|ZP_03049904.1| inner membrane protein YdiK [Escherichia coli E110019]
 gi|194429510|ref|ZP_03062032.1| inner membrane protein YdiK [Escherichia coli B171]
 gi|194438554|ref|ZP_03070643.1| inner membrane protein YdiK [Escherichia coli 101-1]
 gi|209919002|ref|YP_002293086.1| putative inner membrane protein [Escherichia coli SE11]
 gi|218554254|ref|YP_002387167.1| hypothetical protein ECIAI1_1740 [Escherichia coli IAI1]
 gi|218695249|ref|YP_002402916.1| putative inner membrane protein [Escherichia coli 55989]
 gi|237705634|ref|ZP_04536115.1| inner membrane protein YdiK [Escherichia sp. 3_2_53FAA]
 gi|238900903|ref|YP_002926699.1| putative inner membrane protein [Escherichia coli BW2952]
 gi|253773356|ref|YP_003036187.1| inner membrane protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161749|ref|YP_003044857.1| putative inner membrane protein [Escherichia coli B str. REL606]
 gi|256018118|ref|ZP_05431983.1| putative inner membrane protein [Shigella sp. D9]
 gi|256022649|ref|ZP_05436514.1| putative inner membrane protein [Escherichia sp. 4_1_40B]
 gi|260843994|ref|YP_003221772.1| putative inner membrane protein [Escherichia coli O103:H2 str.
           12009]
 gi|260855512|ref|YP_003229403.1| putative inner membrane protein [Escherichia coli O26:H11 str.
           11368]
 gi|293415004|ref|ZP_06657647.1| inner membrane protein [Escherichia coli B185]
 gi|293446062|ref|ZP_06662484.1| inner membrane protein [Escherichia coli B088]
 gi|300818325|ref|ZP_07098535.1| hypothetical protein HMPREF9345_03403 [Escherichia coli MS 107-1]
 gi|300821439|ref|ZP_07101586.1| hypothetical protein HMPREF9346_01266 [Escherichia coli MS 119-7]
 gi|300904539|ref|ZP_07122378.1| hypothetical protein HMPREF9536_02615 [Escherichia coli MS 84-1]
 gi|300918058|ref|ZP_07134679.1| hypothetical protein HMPREF9540_01865 [Escherichia coli MS 115-1]
 gi|300924723|ref|ZP_07140669.1| hypothetical protein HMPREF9548_02850 [Escherichia coli MS 182-1]
 gi|300930842|ref|ZP_07146212.1| hypothetical protein HMPREF9550_03100 [Escherichia coli MS 187-1]
 gi|300951280|ref|ZP_07165129.1| hypothetical protein HMPREF9541_04601 [Escherichia coli MS 116-1]
 gi|300958569|ref|ZP_07170699.1| hypothetical protein HMPREF9547_04277 [Escherichia coli MS 175-1]
 gi|301027867|ref|ZP_07191168.1| hypothetical protein HMPREF9551_03793 [Escherichia coli MS 196-1]
 gi|301303203|ref|ZP_07209329.1| hypothetical protein HMPREF9347_01794 [Escherichia coli MS 124-1]
 gi|301326548|ref|ZP_07219889.1| hypothetical protein HMPREF9535_01500 [Escherichia coli MS 78-1]
 gi|301647871|ref|ZP_07247653.1| hypothetical protein HMPREF9543_04379 [Escherichia coli MS 146-1]
 gi|306815059|ref|ZP_07449215.1| putative inner membrane protein [Escherichia coli NC101]
 gi|307138347|ref|ZP_07497703.1| putative inner membrane protein [Escherichia coli H736]
 gi|307310741|ref|ZP_07590387.1| protein of unknown function UPF0118 [Escherichia coli W]
 gi|309788635|ref|ZP_07683235.1| conserved hypothetical protein [Shigella dysenteriae 1617]
 gi|309793455|ref|ZP_07687882.1| hypothetical protein HMPREF9348_00614 [Escherichia coli MS 145-7]
 gi|331642286|ref|ZP_08343421.1| putative permease [Escherichia coli H736]
 gi|331647179|ref|ZP_08348273.1| putative permease [Escherichia coli M605]
 gi|331653088|ref|ZP_08354093.1| putative permease [Escherichia coli M718]
 gi|331657665|ref|ZP_08358627.1| putative permease [Escherichia coli TA206]
 gi|331668373|ref|ZP_08369221.1| putative permease [Escherichia coli TA271]
 gi|331683195|ref|ZP_08383796.1| putative permease [Escherichia coli H299]
 gi|84027918|sp|P0AFS7|YDIK_ECOLI RecName: Full=UPF0118 inner membrane protein ydiK
 gi|84027919|sp|P0AFS8|YDIK_SHIFL RecName: Full=UPF0118 inner membrane protein ydiK
 gi|1742759|dbj|BAA15450.1| predicted inner membrane protein [Escherichia coli str. K12 substr.
           W3110]
 gi|1787979|gb|AAC74758.1| inner membrane protein, UPF0118 family [Escherichia coli str. K-12
           substr. MG1655]
 gi|24052052|gb|AAN43294.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30041454|gb|AAP17182.1| hypothetical protein S1850 [Shigella flexneri 2a str. 2457T]
 gi|81241087|gb|ABB61797.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|81245353|gb|ABB66061.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|91072475|gb|ABE07356.1| putative purine regulated protein YdiK [Escherichia coli UTI89]
 gi|110615213|gb|ABF03880.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|115512991|gb|ABJ01066.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|157066833|gb|ABV06088.1| inner membrane protein YdiK [Escherichia coli HS]
 gi|157079193|gb|ABV18901.1| inner membrane protein YdiK [Escherichia coli E24377A]
 gi|169754890|gb|ACA77589.1| protein of unknown function UPF0118 [Escherichia coli ATCC 8739]
 gi|169889183|gb|ACB02890.1| predicted inner membrane protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|187429648|gb|ACD08922.1| inner membrane protein YdiK [Shigella boydii CDC 3083-94]
 gi|188487602|gb|EDU62705.1| putative membrane protein [Escherichia coli 53638]
 gi|190902126|gb|EDV61870.1| inner membrane protein YdiK [Escherichia coli B7A]
 gi|192927065|gb|EDV81687.1| inner membrane protein YdiK [Escherichia coli E22]
 gi|192957740|gb|EDV88184.1| inner membrane protein YdiK [Escherichia coli E110019]
 gi|194412474|gb|EDX28774.1| inner membrane protein YdiK [Escherichia coli B171]
 gi|194422564|gb|EDX38562.1| inner membrane protein YdiK [Escherichia coli 101-1]
 gi|209912261|dbj|BAG77335.1| putative transport protein [Escherichia coli SE11]
 gi|218351981|emb|CAU97713.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli 55989]
 gi|218361022|emb|CAQ98597.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli IAI1]
 gi|222033444|emb|CAP76185.1| UPF0118 inner membrane protein ydiK [Escherichia coli LF82]
 gi|226900391|gb|EEH86650.1| inner membrane protein YdiK [Escherichia sp. 3_2_53FAA]
 gi|238862554|gb|ACR64552.1| predicted inner membrane protein [Escherichia coli BW2952]
 gi|253324400|gb|ACT29002.1| protein of unknown function UPF0118 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973650|gb|ACT39321.1| predicted inner membrane protein [Escherichia coli B str. REL606]
 gi|253977844|gb|ACT43514.1| predicted inner membrane protein [Escherichia coli BL21(DE3)]
 gi|257754161|dbj|BAI25663.1| predicted inner membrane protein [Escherichia coli O26:H11 str.
           11368]
 gi|257759141|dbj|BAI30638.1| predicted inner membrane protein [Escherichia coli O103:H2 str.
           12009]
 gi|260449189|gb|ACX39611.1| protein of unknown function UPF0118 [Escherichia coli DH1]
 gi|281601125|gb|ADA74109.1| inner membrane protein ydiK [Shigella flexneri 2002017]
 gi|291322892|gb|EFE62320.1| inner membrane protein [Escherichia coli B088]
 gi|291432652|gb|EFF05631.1| inner membrane protein [Escherichia coli B185]
 gi|294492598|gb|ADE91354.1| inner membrane protein YdiK [Escherichia coli IHE3034]
 gi|299879023|gb|EFI87234.1| hypothetical protein HMPREF9551_03793 [Escherichia coli MS 196-1]
 gi|300314778|gb|EFJ64562.1| hypothetical protein HMPREF9547_04277 [Escherichia coli MS 175-1]
 gi|300403533|gb|EFJ87071.1| hypothetical protein HMPREF9536_02615 [Escherichia coli MS 84-1]
 gi|300414749|gb|EFJ98059.1| hypothetical protein HMPREF9540_01865 [Escherichia coli MS 115-1]
 gi|300419101|gb|EFK02412.1| hypothetical protein HMPREF9548_02850 [Escherichia coli MS 182-1]
 gi|300449461|gb|EFK13081.1| hypothetical protein HMPREF9541_04601 [Escherichia coli MS 116-1]
 gi|300461317|gb|EFK24810.1| hypothetical protein HMPREF9550_03100 [Escherichia coli MS 187-1]
 gi|300525942|gb|EFK47011.1| hypothetical protein HMPREF9346_01266 [Escherichia coli MS 119-7]
 gi|300528965|gb|EFK50027.1| hypothetical protein HMPREF9345_03403 [Escherichia coli MS 107-1]
 gi|300841612|gb|EFK69372.1| hypothetical protein HMPREF9347_01794 [Escherichia coli MS 124-1]
 gi|300846768|gb|EFK74528.1| hypothetical protein HMPREF9535_01500 [Escherichia coli MS 78-1]
 gi|301074012|gb|EFK88818.1| hypothetical protein HMPREF9543_04379 [Escherichia coli MS 146-1]
 gi|305851707|gb|EFM52160.1| putative inner membrane protein [Escherichia coli NC101]
 gi|306908919|gb|EFN39415.1| protein of unknown function UPF0118 [Escherichia coli W]
 gi|308123042|gb|EFO60304.1| hypothetical protein HMPREF9348_00614 [Escherichia coli MS 145-7]
 gi|308923457|gb|EFP68964.1| conserved hypothetical protein [Shigella dysenteriae 1617]
 gi|309701913|emb|CBJ01225.1| putative membrane protein [Escherichia coli ETEC H10407]
 gi|312946288|gb|ADR27115.1| putative inner membrane protein [Escherichia coli O83:H1 str. NRG
           857C]
 gi|313648970|gb|EFS13407.1| hypothetical protein SF2457T_2635 [Shigella flexneri 2a str. 2457T]
 gi|313848654|emb|CAQ32163.2| predicted inner membrane protein [Escherichia coli BL21(DE3)]
 gi|315060993|gb|ADT75320.1| predicted inner membrane protein [Escherichia coli W]
 gi|315136329|dbj|BAJ43488.1| putative inner membrane protein [Escherichia coli DH1]
 gi|315257509|gb|EFU37477.1| putative membrane protein [Escherichia coli MS 85-1]
 gi|315286386|gb|EFU45822.1| hypothetical protein HMPREF9539_03668 [Escherichia coli MS 110-3]
 gi|315299716|gb|EFU58956.1| hypothetical protein HMPREF9545_01227 [Escherichia coli MS 16-3]
 gi|315618883|gb|EFU99466.1| conserved hypothetical protein [Escherichia coli 3431]
 gi|320181288|gb|EFW56207.1| Putative membrane protein [Shigella boydii ATCC 9905]
 gi|320184437|gb|EFW59245.1| Putative membrane protein [Shigella flexneri CDC 796-83]
 gi|320197870|gb|EFW72478.1| Putative membrane protein [Escherichia coli EC4100B]
 gi|323153078|gb|EFZ39347.1| hypothetical protein ECEPECA14_5161 [Escherichia coli EPECa14]
 gi|323163462|gb|EFZ49288.1| hypothetical protein ECE128010_0313 [Escherichia coli E128010]
 gi|323170001|gb|EFZ55657.1| hypothetical protein ECLT68_5645 [Escherichia coli LT-68]
 gi|323186039|gb|EFZ71395.1| hypothetical protein ECOK1357_0501 [Escherichia coli 1357]
 gi|323378435|gb|ADX50703.1| protein of unknown function UPF0118 [Escherichia coli KO11]
 gi|323937291|gb|EGB33570.1| ydiK protein [Escherichia coli E1520]
 gi|323940645|gb|EGB36836.1| ydiK protein [Escherichia coli E482]
 gi|323948016|gb|EGB44008.1| ydiK protein [Escherichia coli H120]
 gi|323952195|gb|EGB48068.1| ydiK protein [Escherichia coli H252]
 gi|323973932|gb|EGB69104.1| ydiK protein [Escherichia coli TA007]
 gi|324016518|gb|EGB85737.1| hypothetical protein HMPREF9542_04862 [Escherichia coli MS 117-3]
 gi|324119172|gb|EGC13060.1| ydiK protein [Escherichia coli E1167]
 gi|330911495|gb|EGH40005.1| putative membrane protein [Escherichia coli AA86]
 gi|331039084|gb|EGI11304.1| putative permease [Escherichia coli H736]
 gi|331043962|gb|EGI16098.1| putative permease [Escherichia coli M605]
 gi|331049186|gb|EGI21258.1| putative permease [Escherichia coli M718]
 gi|331055913|gb|EGI27922.1| putative permease [Escherichia coli TA206]
 gi|331063567|gb|EGI35478.1| putative permease [Escherichia coli TA271]
 gi|331079410|gb|EGI50607.1| putative permease [Escherichia coli H299]
 gi|332090828|gb|EGI95920.1| hypothetical protein SB521682_1834 [Shigella boydii 5216-82]
 gi|332096073|gb|EGJ01078.1| hypothetical protein SB359474_1615 [Shigella boydii 3594-74]
 gi|332101515|gb|EGJ04861.1| inner membrane protein YdiK [Shigella sp. D9]
          Length = 370

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 66/344 (19%), Positives = 137/344 (39%), Gaps = 7/344 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +
Sbjct: 18  LFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMV 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQS 132
           FI+P+  L    +     L+ K + +    +P   WL+ IP  G      W   L    +
Sbjct: 78  FIIPIALLVNSIVDGSGPLI-KAISSGDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGT 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  ++Q +    
Sbjct: 137 AIMAKVRPYIGTTTTWFVGQAAHIGRFMVHCALMLLFSAL----LYWRGEQVAQGIRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  
Sbjct: 193 TRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G+    T L +W    +  +D  +RP L+     LP +  
Sbjct: 253 LVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSG-VVGTLDNVIRPMLIRMGADLPLILI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
             G++GG+   G++GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQP 355


>gi|261323287|ref|ZP_05962484.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261299267|gb|EEY02764.1| conserved hypothetical protein [Brucella neotomae 5K33]
          Length = 354

 Score =  205 bits (522), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 75/352 (21%), Positives = 149/352 (42%), Gaps = 7/352 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     ++  + +   + L  ++  VL A+I+    +P+    +          A 
Sbjct: 3   MSVQRASFYILLTLVTIAFAWLLIPYYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAF 62

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW--ASEL 122
           ++ +  +CL I+P+L +F   + E   L  ++         +  +++ I   +     E 
Sbjct: 63  LSVLMCICLVIIPMLAIFGSLVDEGTSLYQRLSSRE---FDINGYIARIMAALPESLEEW 119

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             +      +      + +   G          FG   L + +    M+  LFF +RDG 
Sbjct: 120 LKRFELGTFADWRARISSVVMQGSQLFAARLVSFGQNTLQFFIGFGIMLYLLFFLFRDGA 179

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + +++      L   Y ++       VIR+T  G  IIAI +G++ G  +WL G+ + +
Sbjct: 180 DVGKKIRRAIP-LSDDYTRQFLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAAL 238

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             GVI    +M+P  GA + +T  +++  + G+ ++   L + G + + +VD  LR  LV
Sbjct: 239 LWGVIMTFCSMLPAVGAALVWTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRLPLV 298

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G   ++P        VGG+  +G+ G  IGP++ A+    W       K+  
Sbjct: 299 GKGTRMPDYVVLISTVGGISLIGINGFVIGPLIAAMFIAAWSLLAEEQKDQH 350


>gi|26247938|ref|NP_753978.1| putative inner membrane protein [Escherichia coli CFT073]
 gi|110641809|ref|YP_669539.1| putative inner membrane protein [Escherichia coli 536]
 gi|191171652|ref|ZP_03033199.1| inner membrane protein YdiK [Escherichia coli F11]
 gi|218689630|ref|YP_002397842.1| putative inner membrane protein [Escherichia coli ED1a]
 gi|218699747|ref|YP_002407376.1| putative inner membrane protein [Escherichia coli IAI39]
 gi|227885892|ref|ZP_04003697.1| inner membrane protein [Escherichia coli 83972]
 gi|300938988|ref|ZP_07153686.1| hypothetical protein HMPREF9530_03822 [Escherichia coli MS 21-1]
 gi|300987762|ref|ZP_07178340.1| hypothetical protein HMPREF9553_03359 [Escherichia coli MS 200-1]
 gi|300994853|ref|ZP_07180966.1| hypothetical protein HMPREF9531_05248 [Escherichia coli MS 45-1]
 gi|301050981|ref|ZP_07197827.1| hypothetical protein HMPREF9549_04881 [Escherichia coli MS 185-1]
 gi|331673244|ref|ZP_08374012.1| putative permease [Escherichia coli TA280]
 gi|26108341|gb|AAN80543.1|AE016761_118 Hypothetical protein ydiK [Escherichia coli CFT073]
 gi|110343401|gb|ABG69638.1| hypothetical protein YdiK [Escherichia coli 536]
 gi|190907982|gb|EDV67574.1| inner membrane protein YdiK [Escherichia coli F11]
 gi|218369733|emb|CAR17504.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli IAI39]
 gi|218427194|emb|CAR08080.2| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli ED1a]
 gi|227837465|gb|EEJ47931.1| inner membrane protein [Escherichia coli 83972]
 gi|281178758|dbj|BAI55088.1| putative transport protein [Escherichia coli SE15]
 gi|284921609|emb|CBG34681.1| putative membrane protein [Escherichia coli 042]
 gi|300297358|gb|EFJ53743.1| hypothetical protein HMPREF9549_04881 [Escherichia coli MS 185-1]
 gi|300306050|gb|EFJ60570.1| hypothetical protein HMPREF9553_03359 [Escherichia coli MS 200-1]
 gi|300406193|gb|EFJ89731.1| hypothetical protein HMPREF9531_05248 [Escherichia coli MS 45-1]
 gi|300456091|gb|EFK19584.1| hypothetical protein HMPREF9530_03822 [Escherichia coli MS 21-1]
 gi|307553709|gb|ADN46484.1| predicted inner membrane protein YdiK [Escherichia coli ABU 83972]
 gi|315290535|gb|EFU49909.1| hypothetical protein HMPREF9544_05061 [Escherichia coli MS 153-1]
 gi|320195417|gb|EFW70042.1| Putative membrane protein [Escherichia coli WV_060327]
 gi|324007042|gb|EGB76261.1| hypothetical protein HMPREF9532_03276 [Escherichia coli MS 57-2]
 gi|324011447|gb|EGB80666.1| hypothetical protein HMPREF9533_04541 [Escherichia coli MS 60-1]
 gi|331069442|gb|EGI40829.1| putative permease [Escherichia coli TA280]
          Length = 370

 Score =  205 bits (522), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 66/344 (19%), Positives = 137/344 (39%), Gaps = 7/344 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +
Sbjct: 18  LFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMV 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQS 132
           FI+P+  L    +     L+ K + +    +P   WL+ IP  G      W   L    +
Sbjct: 78  FIIPIALLVNSIVDGSGPLI-KAISSGDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGT 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  ++Q +    
Sbjct: 137 AIMAKVRPYIGTTTTWFVGQAAHIGRFMVHCALMLLFSAL----LYWRGEQVAQGIRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  
Sbjct: 193 TRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G+    T L +W    +  +D  +RP L+     LP +  
Sbjct: 253 LVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSG-VVGTLDNVIRPMLIRMGADLPLILI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
             G++GG+   G++GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQP 355


>gi|170680839|ref|YP_001743566.1| putative inner membrane protein [Escherichia coli SMS-3-5]
 gi|170518557|gb|ACB16735.1| inner membrane protein YdiK [Escherichia coli SMS-3-5]
          Length = 370

 Score =  205 bits (522), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 66/344 (19%), Positives = 137/344 (39%), Gaps = 7/344 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +
Sbjct: 18  LFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKFMFGRRSLAVLVMTLLLVMV 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQS 132
           FI+P+  L    +     L+ K + +    +P   WL+ IP  G      W   L    +
Sbjct: 78  FIIPIALLVNSIVDGSGPLI-KAISSGDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGT 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  ++Q +    
Sbjct: 137 AIMAKVRPYIGTTTTWFVGQAAHIGRFMVHCALMLLFSAL----LYWRGEQVAQGIRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  
Sbjct: 193 TRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G+    T L +W    +  +D  +RP L+     LP +  
Sbjct: 253 LVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSG-VVGTLDNVIRPMLIRMGADLPLILI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
             G++GG+   G++GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQP 355


>gi|295676075|ref|YP_003604599.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1002]
 gi|295435918|gb|ADG15088.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1002]
          Length = 371

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 77/356 (21%), Positives = 158/356 (44%), Gaps = 5/356 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+   L  +    + ++ ++  SL  L  F   +L   I+ ++SW +Y            
Sbjct: 1   MKSDQLIERLAAVFALIVLVGGSLLVLAPFTTALLWGAILSYSSWGLYRRLTGVVGGRRK 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWA 119
             A +  + ++ + + P ++  +     + E+V+ V    + G+P +P W+  IP    +
Sbjct: 61  LAATMIVLIILVVVLGPFVYAGFAFGAHVHEIVALVQRLFESGLPDLPPWVQRIPLVGSS 120

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            E + + L+   S  I     L      +I   A           LSI+      FFFY 
Sbjct: 121 IEAFWERLTSSNSELIAQLRTLAAPAGKWILAAALAVTHGLGLLALSIVLA----FFFYT 176

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G   +  L++    +     + +  +    ++    G+   A+ +G++ G  +W+AGVP
Sbjct: 177 GGEGAAAWLNAGMRRVAGERAEYLLALAGSTVKGVVYGILGTALVQGVLAGFGFWVAGVP 236

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           +   LG++T  ++++PGG  + +   +I+L   G+   A  L +WG + + + D  ++P 
Sbjct: 237 APALLGLVTFFLSVVPGGPVVVWLPAAIWLYQGGSTGWAIFLVVWGLLVVGMADNVIKPI 296

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L+G    +P +    G++GG    G LG+FIGP L+A+   +  +  +     + +
Sbjct: 297 LIGKNSDMPLILVMLGILGGAFAFGFLGVFIGPTLLAVAHTVLHDWTIGASAAQTQ 352


>gi|170768895|ref|ZP_02903348.1| inner membrane protein YdiK [Escherichia albertii TW07627]
 gi|170122443|gb|EDS91374.1| inner membrane protein YdiK [Escherichia albertii TW07627]
          Length = 370

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 137/343 (39%), Gaps = 7/343 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +
Sbjct: 18  LFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMV 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQS 132
           FI+P+  L    +     L+ K + +    +P   WL+ IP  G      W   L    +
Sbjct: 78  FIIPIALLVNSIVDGSGPLI-KAISSGDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGT 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  ++Q +    
Sbjct: 137 AIMAKVRPYIGTTTTWFVGQAAHIGRFMMHCALMLLFSAL----LYWRGEQVAQGIRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    +AGVP    L V+  +  
Sbjct: 193 TRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVAGVPYATLLTVLMILSC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G+    T L +W    +  +D  +RP L+     LP +  
Sbjct: 253 LVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSG-VVGTLDNIIRPMLIRMGADLPLILI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             G++GG+   G++GLFIGPVL+A+   ++   +  +    ++
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQ 354


>gi|293410002|ref|ZP_06653578.1| inner membrane protein [Escherichia coli B354]
 gi|291470470|gb|EFF12954.1| inner membrane protein [Escherichia coli B354]
          Length = 370

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 66/344 (19%), Positives = 136/344 (39%), Gaps = 7/344 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +
Sbjct: 18  LFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMV 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQS 132
           FI+P+  L    +     L+ K + +    +P   WL+ IP  G      W   L    +
Sbjct: 78  FIIPIALLVNSIVDGSGPLI-KAISSGDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGT 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  + Q +    
Sbjct: 137 AIMAKVRPYIGTTTTWFVGQAAHIGRFMVHCALMLLFSAL----LYWRGEQVGQGIRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  
Sbjct: 193 TRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G+    T L +W    +  +D  +RP L+     LP +  
Sbjct: 253 LVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSG-VVGTLDNVIRPMLIRMGADLPLILI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
             G++GG+   G++GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQP 355


>gi|83644526|ref|YP_432961.1| permease [Hahella chejuensis KCTC 2396]
 gi|83632569|gb|ABC28536.1| predicted permease [Hahella chejuensis KCTC 2396]
          Length = 361

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 77/336 (22%), Positives = 140/336 (41%), Gaps = 5/336 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
             +  FF  +  A ++     P++   I +        A++  ++ + + ++PL  +   
Sbjct: 23  LLILPFFYAIFWAAMLAILFAPLHRWLIRRFPGRDNISALLTLLASLLIVVIPLAVMMTM 82

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
              E   +  +V       I +   +      M   +   +             +     
Sbjct: 83  LAKEGARVYQQVSSGE---IQLQALVDKARATMPVIQELAERFDIDLGNVKQMLSQAALT 139

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
           G  F    A  FG  +L + +S + M+   FFF RDG S+ Q L      L       + 
Sbjct: 140 GSKFFATQAFNFGQEYLQFTVSFVLMLYLTFFFLRDGGSLIQLLIRALP-LGDTREMHLF 198

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
           +   +V R+T  G  ++AI +G + G  +W  G+   +  GV+  +++++P  G+ + + 
Sbjct: 199 QKFAEVSRATVKGNLVVAIVQGTLGGLIFWALGIKGALLWGVVMVVLSLLPAVGSALVWA 258

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             + YL   G++F    L L+G   + +VD  LRP LVG   K+P        +GG+   
Sbjct: 259 PAAAYLFFSGDVFKGVVLVLFGFFVIGLVDNVLRPVLVGRDTKMPDYLVLLSTLGGLSLF 318

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           GL G  +GPVL AL    W+  +     N+EK  S+
Sbjct: 319 GLNGFVLGPVLTALFLAFWQIFMEEFNNNEEKSISD 354


>gi|323978175|gb|EGB73261.1| ydiK protein [Escherichia coli TW10509]
          Length = 370

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 66/344 (19%), Positives = 137/344 (39%), Gaps = 7/344 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +
Sbjct: 18  LFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMV 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQS 132
           FI+P+  L    +     L+ K + +    +P   WL+ IP  G      W   L    +
Sbjct: 78  FIIPIALLVNSIVDGSGPLI-KAISSGDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGT 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  ++Q +    
Sbjct: 137 AIMAKLRPYIGTTTTWFVGQAAHIGRFMVHCALMLLFSAL----LYWRGEQVAQGIRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  
Sbjct: 193 TRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G+    T L +W    +  +D  +RP L+     LP +  
Sbjct: 253 LVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSG-VVGTLDNVIRPMLIRMGADLPLILI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
             G++GG+   G++GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQP 355


>gi|260868179|ref|YP_003234581.1| putative inner membrane protein [Escherichia coli O111:H- str.
           11128]
 gi|257764535|dbj|BAI36030.1| predicted inner membrane protein [Escherichia coli O111:H- str.
           11128]
 gi|323181004|gb|EFZ66542.1| hypothetical protein ECOK1180_0300 [Escherichia coli 1180]
          Length = 370

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 66/344 (19%), Positives = 136/344 (39%), Gaps = 7/344 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +
Sbjct: 18  LFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMV 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQS 132
           FI+P+  L    +     L+ K + +    +P   WL+ IP  G      W   L    +
Sbjct: 78  FIIPIALLVNSIVDGSGPLI-KAISSGDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGT 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  + Q +    
Sbjct: 137 AIMAKVRPYIGTTTTWFVGQAAHIGRFMVHCALMLLFSAL----LYWRGEQVVQGIRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  
Sbjct: 193 TRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G+    T L +W    +  +D  +RP L+     LP +  
Sbjct: 253 LVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSG-VVGTLDNVIRPMLIRMGADLPLILI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
             G++GG+   G++GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQP 355


>gi|74311987|ref|YP_310406.1| putative inner membrane protein [Shigella sonnei Ss046]
 gi|73855464|gb|AAZ88171.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|323169258|gb|EFZ54934.1| hypothetical protein SS53G_0428 [Shigella sonnei 53G]
          Length = 370

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 65/344 (18%), Positives = 136/344 (39%), Gaps = 7/344 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +
Sbjct: 18  LFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMV 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQS 132
           FI+P+  L    +     L+ K + +    +P   WL+ IP  G      W   L    +
Sbjct: 78  FIIPIALLVNSIVDGSGPLI-KAISSGDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGT 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  ++Q +    
Sbjct: 137 AIMAKVRPYIGTTTTWFVGQAAHIGRFMVHCALMLLFSAL----LYWRGEQVAQGIRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++      ++GVP    L V+  +  
Sbjct: 193 TRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGSIGLAVSGVPYATLLTVLMILSC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G+    T L +W    +  +D  +RP L+     LP +  
Sbjct: 253 LVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSG-VVGTLDNVIRPMLIRMGADLPLILI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
             G++GG+   G++GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQP 355


>gi|323187112|gb|EFZ72428.1| hypothetical protein ECRN5871_4699 [Escherichia coli RN587/1]
          Length = 370

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 66/344 (19%), Positives = 136/344 (39%), Gaps = 7/344 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +
Sbjct: 18  LFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMV 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQS 132
           FI+P+  L    +     L+ K + +    +P   WL+ IP  G      W   L    +
Sbjct: 78  FIIPIALLVNSIVDGSGPLI-KAISSGDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGT 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  + Q +    
Sbjct: 137 AIMAKVRPYIGTTTTWFVGQAAHIGRFMVHCALMLLFSAL----LYWRGEQVVQGIRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  
Sbjct: 193 TRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G+    T L +W    +  +D  +RP L+     LP +  
Sbjct: 253 LVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSG-VVGTLDNVIRPMLIRMGADLPLILI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
             G++GG+   G++GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQP 355


>gi|296160670|ref|ZP_06843485.1| protein of unknown function UPF0118 [Burkholderia sp. Ch1-1]
 gi|295889196|gb|EFG68999.1| protein of unknown function UPF0118 [Burkholderia sp. Ch1-1]
          Length = 371

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 77/354 (21%), Positives = 155/354 (43%), Gaps = 5/354 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+   L  +    + ++ ++  SL  L  F   +L   I+ ++SW +Y    +       
Sbjct: 1   MKSDQLIERLAAVFALIILVGGSLLVLAPFTTALLWGAILSYSSWGLYRRLTAALGGRRK 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWA 119
           + A +    ++ + + P ++  +     + ++V+ V    + G+P +P W++ IP    +
Sbjct: 61  WAATLIVFIILIVVLGPFVYAGFAFGAHVHDIVALVQRLFEAGLPDLPSWVARIPLVGSS 120

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            E + + L+   S  I     L      +I   A           LSI+      FFFY 
Sbjct: 121 IETFWERLTSSNSELIAQLRTLAAPAGKWILAAAIAVTHGLGLLALSIVLA----FFFYT 176

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G   +  L++    +       +  +    ++    G+   A+ +G++ G   W+AGVP
Sbjct: 177 GGEGAAAWLNAGMRRIAGERADYLLALAGSTVKGVVYGILGTALVQGILAGFGCWIAGVP 236

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           +   LG+ T  +++IPGG  + +   +I+L   G    A  L +WG + + + D  ++P 
Sbjct: 237 APALLGLATFFLSVIPGGPVVVWLPAAIWLYHGGATGWAIFLVVWGVLVVGMSDNVIKPI 296

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L+G    +P +    G++GG    G LG+FIGP L+A+   +  +  +     +
Sbjct: 297 LIGKNSDMPLILVMLGILGGAFAFGFLGVFIGPTLLAVAYTVLHDWTIGAPAAR 350


>gi|148555776|ref|YP_001263358.1| hypothetical protein Swit_2868 [Sphingomonas wittichii RW1]
 gi|148500966|gb|ABQ69220.1| protein of unknown function UPF0118 [Sphingomonas wittichii RW1]
          Length = 358

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 74/333 (22%), Positives = 137/333 (41%), Gaps = 3/333 (0%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
              +++ + +     +  FF  +L  L++     P++   + +    S   A+I  + ++
Sbjct: 17  FLALVLIVTVAFAMVIAPFFGAILWGLVLALMFSPVHRRILDRMPGRSNVAALITLLIII 76

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + I+P  FL    + E   + + V         +   ++      WAS           
Sbjct: 77  LIVILPAAFLGSAMIQEFLHVYAMVQSGQIDIARMFEQMTGALP-DWASHWLAARGLTDF 135

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +      +   +     I   A + G   L+  L +  M+   FF  RDG  +++++   
Sbjct: 136 AAARQQISETLSGSFSAIAAHALQVGQGALNLVLMLGVMLYLTFFLIRDGEELARRVIE- 194

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L P   + + R    V R+T  G  I+AI +G   G  + L G+   +  G + AI 
Sbjct: 195 SIPLDPDRRRAVIRNFTVVTRATIKGSLIVAIVQGFTGGVTFALLGIEGALLWGTMMAIF 254

Query: 252 AMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           ++IP  G  I +  V++YL   G +     L + GA+ +  +D  LRP LVG   ++P  
Sbjct: 255 SLIPAIGCGIVWVPVALYLFATGAVVKGIILVVAGALVIGSIDNVLRPLLVGRDTRMPDY 314

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                 +GG++  G  G  +GPV+ AL    W 
Sbjct: 315 VVLISTLGGLQLFGFHGFIVGPVVAALFIGTWN 347


>gi|212712086|ref|ZP_03320214.1| hypothetical protein PROVALCAL_03165 [Providencia alcalifaciens DSM
           30120]
 gi|212685608|gb|EEB45136.1| hypothetical protein PROVALCAL_03165 [Providencia alcalifaciens DSM
           30120]
          Length = 371

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 133/344 (38%), Gaps = 6/344 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I+F+I    + L  F    + A ++   +WPI     ++        ++   + +  LF+
Sbjct: 20  IIFMIATCFWVLSPFILGFIWAGMMVIATWPILLRLEARLWHKRWLASLTMVLLIFLLFV 79

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLK 134
           +P   L    +     L+          +P   WL+ IP  G      W   ++   +  
Sbjct: 80  IPTSILIGSIIQNSAPLIELAKSPTNMTLPDLEWLNQIPMVGEKLYYAWHSLVASGGNAL 139

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           +            +    A           L ++F  +     Y  G  ++  +      
Sbjct: 140 LAKVQPYFGQAAGWFATQAISASRFLFHLVLMLLFSGL----LYYKGELVTLGVRHFAVR 195

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L          +  + IR+  LG+ + A+ + +V G    L+G+     L V+  I  + 
Sbjct: 196 LAGIRGDAAVVLAAQSIRAVALGVVVTALIQAIVGGIGLALSGISYAAILTVLIFICCVA 255

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G  +      ++L   G+   A  L +W A  +  +D  LRP+L+     LP +    
Sbjct: 256 QLGPLLVMVPSVLWLFWTGDTTWAIILGVW-AAVVATMDGVLRPWLIKMGADLPMVLILV 314

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           G++GG+ + G++GLFIGPV++A+   + K  +  +    E + +
Sbjct: 315 GVIGGILSFGMIGLFIGPVVLAVSYSLLKAWMNEVAPPSEDLEA 358


>gi|157370415|ref|YP_001478404.1| hypothetical protein Spro_2175 [Serratia proteamaculans 568]
 gi|157322179|gb|ABV41276.1| protein of unknown function UPF0118 [Serratia proteamaculans 568]
          Length = 366

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 69/347 (19%), Positives = 138/347 (39%), Gaps = 8/347 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             I  +I+   + ++ F      A ++   +WP+            +   ++ T+ ++ L
Sbjct: 18  LFIAIMIVACFWVIQPFILGFAWAGMVVIATWPLLIKLQKILWGRRSLAVLVMTILLILL 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP--GGMWASELWTKHLSHPQ 131
           FI+P+  L    +     +V+      +  IP   WL  IP  G        T   +   
Sbjct: 78  FILPISLLVSSVVDNSAPIVAWASTPGKLHIPDLAWLQSIPMIGDKVYHSYHTLVNAGGS 137

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +L    + +       F+ + A+  G + L   L ++F ++     Y  G  ++  +   
Sbjct: 138 ALVAKVQPYFGQTATWFVAQ-AAHIGRLLLHCTLMLLFSVL----LYARGEQVALGIRHF 192

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L          +  + IR+  LG+ + A+ + ++ G    + G+P+   L V+  I 
Sbjct: 193 ATRLGAERGDAAVVLGGQAIRAVALGVVVTALVQSVLGGIGLAVTGIPAATLLTVLIFIC 252

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +   G  +      I+L   G+    T L +W    +  +D  LRP L+     LP + 
Sbjct: 253 CVAQLGPLLVLVPAIIWLYWSGDTTWGTVLLVWSC-VVATLDNVLRPVLIRMGADLPMIL 311

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
              G++GG+   G++GLFIGPV++A+   +    +    E    +  
Sbjct: 312 ILSGVIGGLLAFGMIGLFIGPVVLAVSYRLLTAWMNEAPEPTADLEE 358


>gi|27904620|ref|NP_777746.1| putative inner membrane protein [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|46397200|sp|Q89AW1|Y117_BUCBP RecName: Full=UPF0118 membrane protein bbp_117
 gi|27904017|gb|AAO26851.1| putative membrane protein [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 368

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 84/351 (23%), Positives = 156/351 (44%), Gaps = 8/351 (2%)

Query: 2   RETMLNPQGIMRWMIMFIILVS-LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           RE M  PQ I   + +FI+++S L+ ++ FF     A ++   +WPI+         +  
Sbjct: 5   REGMDLPQVIFSLVFIFIMIISSLWIMRPFFLGFAWASMVVVATWPIFLKLQILLWGNRA 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWA 119
              V+ T S++ +FI+P++ L    +     ++S +  +++   P   WL DIP  G+  
Sbjct: 65  CAVVMMTFSLLLVFIIPIVCLVNSLIDNSTSVISWL-SSDKFRFPSLEWLQDIPIIGIKL 123

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              + K L+   +  I           +F    A  FG     + L +IFM+I     Y 
Sbjct: 124 FSSYQKLLNEGGAELITKVQPYMGKTTEFFVIQAGHFGR----FILHLIFMLIFSALLYW 179

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           +G  +   +      L       +  +  + IR+  LG+ + A+ +G++ G    ++G+P
Sbjct: 180 NGEKVQSVIRHFAIRLGSKSGDSVVLLAGQAIRAVALGVVVTALVQGILSGIGLAISGIP 239

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               L ++  I  ++  G         I+L   G     T L +W    + I+D  LRP 
Sbjct: 240 YSSLLMMLIIIFCLVQLGPLPVLIPAIIWLYWNGKTTWGTVLLIWSC-VVCILDHILRPI 298

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+   + LP +    G++GG+   G++GLFIGPV++ +   +    +  I 
Sbjct: 299 LIRIGVDLPTVLILSGVIGGLIAFGMIGLFIGPVVLIISYRLISSWMDEIP 349


>gi|257092178|ref|YP_003165819.1| hypothetical protein CAP2UW1_0541 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044702|gb|ACV33890.1| protein of unknown function UPF0118 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 372

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 141/346 (40%), Gaps = 7/346 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I  SL+ L+ F   ++ A ++   +WP+      +         ++ T  V+ +
Sbjct: 18  LFLCVLIAASLWILRPFLPALIWATMVVVATWPLMLRAQRRFGNRRWPAVILMTFLVLLI 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMW-ASELWTKHLSHPQ 131
            +VPL       +    E+       +   +   P W++D+P   W   ++W +  +   
Sbjct: 78  LVVPLSVAIATIVGNADEITEWAKSLSSLHVQSPPAWVADVPFVGWRLEQIWQQTATTGG 137

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +           N   +       FG++F+ + L++    +     Y  G   +  +   
Sbjct: 138 TELAAKVAPYAANLTRWFVSEIGSFGLVFVQFLLTVALCAV----LYASGEKAAAGVRRF 193

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
           G  L     +    +  +  R+  LG+ + A+ + ++ G    +AGVP    L  +  + 
Sbjct: 194 GYRLSGERGEGAVILAGQAARAVALGVGVTALVQSILGGIGLAIAGVPFAPVLTAVMFMF 253

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +   G  +      ++L    +    T L +W AI +  +D  LRP L+     LP L 
Sbjct: 254 CIAQLGPGLVLVPAVVWLYWGDHTGWGTFLLIW-AIFVGTMDNFLRPVLIKQGADLPLLL 312

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
              G++GG+   GL+GLF+GPV++A+   + +  I  +    + ++
Sbjct: 313 ILAGVIGGMLAFGLVGLFVGPVILAVGYTLLEAWINEVPHEIDSVA 358


>gi|209521729|ref|ZP_03270416.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
 gi|209497846|gb|EDZ98014.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
          Length = 371

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 75/351 (21%), Positives = 149/351 (42%), Gaps = 7/351 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+   L  +    + ++ ++  SL  L  F   +L   I+ ++SW +Y            
Sbjct: 1   MKSDQLIERLAAVFALIVLVGGSLLVLAPFTTALLWGAILSYSSWGLYRRLTGVVGGRRK 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMW 118
             A +  + ++ + + P ++  +     + ++V+ V    + G+P +P W+  IP  G  
Sbjct: 61  LAATLIVLIILVVVLGPFVYAGFAFGTHVHQIVALVERLFESGLPDLPPWVQRIPLVGSS 120

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
               W +  S    L     T     G   +       G+        +   I+  FFFY
Sbjct: 121 IEAFWERVTSSNSELIAQLRTLAAPAGKWILAA-----GLAVTHGLGLLALSIVLAFFFY 175

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
             G   +  L++    +       +  +    ++    G+   A+ + ++ G   WLAGV
Sbjct: 176 TGGEGAAAWLNAGMRRVAGERADYLLALAGSTVKGVVYGILGTALVQAVLAGFGCWLAGV 235

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P+   LG+ T  ++++PGG  I +   +I+L   G+   A  L +WG + + + D  ++P
Sbjct: 236 PAPALLGLATFFLSVVPGGPVIVWLPAAIWLYQGGSTGWAIFLVVWGVLVVGMSDNVIKP 295

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            L+G    +P +    G++GG    G LG+FIGP L+A+   +  +  +  
Sbjct: 296 ILIGKNSDMPLILVMLGILGGALAFGFLGVFIGPTLLAVAYTVLHDWTIGA 346


>gi|163853947|ref|YP_001641990.1| hypothetical protein Mext_4551 [Methylobacterium extorquens PA1]
 gi|163665552|gb|ABY32919.1| protein of unknown function UPF0118 [Methylobacterium extorquens
           PA1]
          Length = 359

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 104/333 (31%), Positives = 170/333 (51%), Gaps = 7/333 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK--EESSTFLAVIATVSVMCLFIVPLLF 80
            LY L GF   ++ A+++    WP++     +      +     + T  V  + ++P+  
Sbjct: 30  GLYILSGFLRALVWAVVLAIALWPLFVRAHRRFPPGRHNILWPAVFTGLVALVLLLPIAV 89

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA-SELWTKHLSHPQSLKILSET 139
           L      E  +L++    A ++GIPVP +++ +P G  A +E W  HL+H      LSE 
Sbjct: 90  LAVEAGREAHDLLAYAREAERNGIPVPDFVARLPYGAAAVTEWWNAHLAHAGLAHELSER 149

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
              T+  D         G   +   +   F ++ALFF +R+G ++  Q       LF   
Sbjct: 150 LNTTSNRDL----TRSLGAGLVHRAVLFGFCLLALFFLFREGDTVIAQSLRASHRLFGPR 205

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            ++++R +   +  T  G+ ++ IGEG +LG  Y  AGVP  V  G +TA+ AMIP GAP
Sbjct: 206 GERVARQMVASVHGTVDGLVLVGIGEGFLLGIVYAFAGVPHPVLFGALTAVAAMIPFGAP 265

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           ++F   ++ LL  G +  A  +   G +  F+ D  +RP L+GG  +LPFL    G++GG
Sbjct: 266 LAFGLAAVLLLAGGAVVPAAIVVAAGFVVTFVADHFVRPALIGGTTRLPFLWVLLGILGG 325

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           V T GLLGLF+GP +MA + ++W+E     +E 
Sbjct: 326 VETFGLLGLFVGPAVMAALILLWREFTEGSEEP 358


>gi|218532888|ref|YP_002423704.1| hypothetical protein Mchl_5011 [Methylobacterium chloromethanicum
           CM4]
 gi|218525191|gb|ACK85776.1| protein of unknown function UPF0118 [Methylobacterium
           chloromethanicum CM4]
          Length = 359

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 104/333 (31%), Positives = 170/333 (51%), Gaps = 7/333 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK--EESSTFLAVIATVSVMCLFIVPLLF 80
            LY L GF   ++ A+++    WP++     +      +     + T  V  + ++P+  
Sbjct: 30  GLYILSGFLRALVWAVVLAIALWPLFVRAHRRFPPGRHNILWPAVFTGLVALVLLLPIAV 89

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA-SELWTKHLSHPQSLKILSET 139
           L      E  +L++    A ++GIPVP +++ +P G  A +E W  HL+H      LSE 
Sbjct: 90  LAVEAGREAHDLLAYAREAERNGIPVPDFVAHLPYGAAAITEWWNAHLAHAGLAHELSER 149

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
              T+  D         G   +   +   F ++ALFF +R+G ++  Q       LF   
Sbjct: 150 LNTTSNRDL----TRSLGAGLVHRVVLFGFCLLALFFLFREGDTVIAQSLRASHRLFGPR 205

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            ++++R +   +  T  G+ ++ IGEG +LG  Y  AGVP  V  G +TA+ AMIP GAP
Sbjct: 206 GERVARQMVASVHGTVDGLVLVGIGEGFLLGIVYAFAGVPHPVLFGALTAVAAMIPFGAP 265

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           ++F   ++ LL  G +  A  +   G +  F+ D  +RP L+GG  +LPFL    G++GG
Sbjct: 266 LAFGLAAVLLLAGGAVVPAAIVVAAGFVVTFVADHFVRPALIGGTTRLPFLWVLLGILGG 325

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           V T GLLGLF+GP +MA + ++W+E     +E 
Sbjct: 326 VETFGLLGLFVGPAVMAALILLWREFTEGSEEP 358


>gi|261339537|ref|ZP_05967395.1| putative membrane protein [Enterobacter cancerogenus ATCC 35316]
 gi|288318351|gb|EFC57289.1| putative membrane protein [Enterobacter cancerogenus ATCC 35316]
          Length = 371

 Score =  203 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 67/360 (18%), Positives = 139/360 (38%), Gaps = 8/360 (2%)

Query: 1   MRETMLNPQGIMRWMIM-FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           +R+     Q ++  + +  +I+  L+ ++ F      A  +   +WP+            
Sbjct: 4   LRQPRDVAQILLSVLFLALMIIACLWIVQPFILGFAWAGTVVVATWPLLLRLQKMLFGRR 63

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMW 118
               ++ T+ +  LFI+P+  L    +     ++ + V +    +P   WL+ IP  G  
Sbjct: 64  ALAVLVMTLLLFLLFIIPIALLVNSLVDSSGPVI-RAVSSGDMTLPDLAWLNSIPVIGAK 122

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
               W   L    S  +            +    A+  G   +   L ++F  +     Y
Sbjct: 123 LYSGWHGLLEMGGSALMAKVRPYIGTTTTWFVGQAAHIGRFMMHCALMLVFSAL----LY 178

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
             G  ++  +      L          +  + +R+  LG+ + A+ + ++ G    ++GV
Sbjct: 179 WRGEQVALGVRHFATRLAGKRGDAAVLLAAQAVRAVALGVVVTALVQAILGGIGLAVSGV 238

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P      V+  +  +   G  +      I+L   G+    T L +W    +  +D  +RP
Sbjct: 239 PYATVFTVVMLMTCLAQLGPLLVLVPSIIWLYWTGDTTWGTVLLVWSC-VVGTMDNVIRP 297

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            L+     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  I        +
Sbjct: 298 ILIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEIPPPGTDPDA 357


>gi|319763353|ref|YP_004127290.1| hypothetical protein Alide_2671 [Alicycliphilus denitrificans BC]
 gi|330825587|ref|YP_004388890.1| hypothetical protein Alide2_3027 [Alicycliphilus denitrificans
           K601]
 gi|317117914|gb|ADV00403.1| protein of unknown function UPF0118 [Alicycliphilus denitrificans
           BC]
 gi|329310959|gb|AEB85374.1| protein of unknown function UPF0118 [Alicycliphilus denitrificans
           K601]
          Length = 352

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 76/320 (23%), Positives = 136/320 (42%), Gaps = 5/320 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L      +   +++     P++   + +        A I     + + I+P++F+    
Sbjct: 25  ILWPLNGAIFWGVVLAILFTPLHRRLLRRMPRRRNLAAFITLCICLVIVILPMVFIGISL 84

Query: 86  MLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
           + E      +       +G  + + L+ +P   W  EL  +      +      T +   
Sbjct: 85  VQEASVAYERARSGQLNYGAYLQQVLAALPA--WVLELLDRFHLTSMAELQARLTAVGAQ 142

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
              F+   A   G   L + +S   M+  LFF  RDG  ++ ++      L   +  +++
Sbjct: 143 ASQFLATKALDVGQNTLQFIVSFGVMLYLLFFLLRDGPRLAARIRQAIP-LDTEHKNQLA 201

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
           R    VIR+T  G  ++A  +G + G  +W+ G+   V  GV+ A ++++P  GA + + 
Sbjct: 202 RKFTTVIRATVKGNIVVAAAQGALGGLIFWILGIQGPVMWGVLMAFLSLLPAVGASLIWG 261

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
            V+IY L  G+   A  L  +G   + +VD  LRP LVG   K+P        +GG+   
Sbjct: 262 PVAIYFLATGSTGQAAILTAYGVGVIGLVDNLLRPLLVGKDTKMPDYVVLISTLGGMALF 321

Query: 324 GLLGLFIGPVLMALIAVIWK 343
           GL G  IGPV+ AL    W 
Sbjct: 322 GLTGFVIGPVIAALFMATWD 341


>gi|323962179|gb|EGB57774.1| ydiK protein [Escherichia coli H489]
          Length = 370

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 65/344 (18%), Positives = 136/344 (39%), Gaps = 7/344 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +
Sbjct: 18  LFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMV 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQS 132
           FI+P+  L    +     L+ K + +    +P   WL+ IP  G      W   L    +
Sbjct: 78  FIIPIALLVNSIVDGSGPLI-KAISSGDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGT 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  ++  +    
Sbjct: 137 AIMAKVRPYIGTTTTWFVGQAAHIGRFMVHCALMLLFSAL----LYWRGEQVALGIRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  
Sbjct: 193 TRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G+    T L +W    +  +D  +RP L+     LP +  
Sbjct: 253 LVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSG-VVGTLDNVIRPMLIRMGADLPLILI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
             G++GG+   G++GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQP 355


>gi|168240872|ref|ZP_02665804.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205339094|gb|EDZ25858.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 395

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 135/346 (39%), Gaps = 7/346 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  I   +WP+            +   ++ T+ ++ L
Sbjct: 18  LFLAIMIVACLWIVQPFILGFAWAGTIVIATWPVLLKLQKILWGRRSLAVLVMTLLLVLL 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           F++P+  L    +     L+   V      +P   WL++IP  G      W   L    S
Sbjct: 78  FVIPVALLVNSIVDGSGPLI-HAVTGGDMTLPDLAWLNNIPLVGAKLYAGWHSLLDMGGS 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  ++  +    
Sbjct: 137 AIMAKVRPYIGTTTTWFVGQAAHIGRFMMHCALMLLFSAL----LYWRGEQVAMGIRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  
Sbjct: 193 CRLAAKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGVGLAISGVPYATLLTVVMILSC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G+    T L +W A  +  +D  +RP L+     LP L  
Sbjct: 253 LVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSA-VVGTLDNVIRPVLIRMGADLPLLLI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G++GG+   G++GLFIGPVL+A+   ++   +  +     +   
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEVPAPTNEPEE 357


>gi|238025108|ref|YP_002909340.1| hypothetical protein bglu_2g17670 [Burkholderia glumae BGR1]
 gi|237879773|gb|ACR32105.1| Hypothetical protein bglu_2g17670 [Burkholderia glumae BGR1]
          Length = 356

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 96/337 (28%), Positives = 171/337 (50%), Gaps = 8/337 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSF--ISKKEESSTFLAVIATVSVM 71
            +   ++ ++L+ ++ F   +  A +I    WP       I       T +A++ T +V 
Sbjct: 23  VLYTVLVALALWIIRAFLPAIAWAGVIAIALWPALRRIDAIRWLSGRRTLVAILLTSAVG 82

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM-WASELWTKHLSHP 130
            L + P+         ++ ++ + V  A  +GIP+P  +  +P G    +  W  +L+ P
Sbjct: 83  LLLVAPVAIAVAQAAGQIHDVFAWVHDARANGIPLPDAVYHLPFGSRQVAAWWQANLAQP 142

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
               + +   +K    +    +   FG   L   +   FM++ LF  +R G  +S+ L  
Sbjct: 143 ----LHAPAGVKGMNGEAFVSYGKAFGSHVLHAAVLFGFMLVTLFVIFRAGPRMSESLMR 198

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
             +  F A    +++ +   +  T  G+ ++ +GEG +LG AY +AGV     LG++TA+
Sbjct: 199 GVQRAFGANGASLTQRMVSAVYGTVTGLVVVGLGEGALLGVAYAVAGVSHAALLGLVTAV 258

Query: 251 MAMIPGGAPISFTAVSIYLLI-KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            AM+P  AP+ F   +++L + KG    A  L ++GA+ +F+ +  +RP L+GG  +LPF
Sbjct: 259 AAMLPFCAPVVFCGAALWLFLVKGAAAWAIGLAVFGAVVVFVAEHFVRPVLIGGSARLPF 318

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           L   FG++GG  T GLLGLFIGP LM ++ V+W E +
Sbjct: 319 LLVLFGILGGAETFGLLGLFIGPALMTVLTVLWSEWV 355


>gi|325497136|gb|EGC94995.1| inner membrane protein [Escherichia fergusonii ECD227]
          Length = 372

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 66/340 (19%), Positives = 136/340 (40%), Gaps = 7/340 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F   +  A  +   +WP+            +   ++ T+ ++ +
Sbjct: 20  LFLAIMIVACLWIVQPFILGITWAGTVVIATWPVLLRLQKILFGRRSLAVLVMTLLLVMV 79

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQS 132
           FI+P+  L    +     L+ K + +    +P   WL+ IP  G      W   L    +
Sbjct: 80  FIIPIALLVNSIVDGSGPLI-KAISSGDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGT 138

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  ++Q +    
Sbjct: 139 AIMAKVRPYIGTTTTWFVGQAAHLGRFMVHCALMLLFSAL----LYWRGEQVAQGIRHFA 194

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  
Sbjct: 195 TRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSC 254

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G+    T L +W    +  +D  +RP L+     LP +  
Sbjct: 255 LVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSG-VVGTLDNVIRPMLIRMGADLPLILI 313

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             G++GG+   G++GLFIGPVL+A+   ++   +  +   
Sbjct: 314 LSGVIGGLIAFGMIGLFIGPVLLAVTWRLFAAWVDEVPPP 353


>gi|326386812|ref|ZP_08208432.1| hypothetical protein Y88_2706 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208731|gb|EGD59528.1| hypothetical protein Y88_2706 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 386

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 80/361 (22%), Positives = 152/361 (42%), Gaps = 14/361 (3%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
             + P+     ++    +  L+ +  F   +L A+I+     P+ ++ +          A
Sbjct: 30  ATIPPRAFQIGLVAAATVGFLWLIAPFSGAILWAVIVTILFSPLNAALLRGLPGRRNTAA 89

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN--------QHGIPVPRWLSDIPG 115
           +IA + ++ + +VP + L    + E+ EL+S   +A              +P W      
Sbjct: 90  LIALLVIVAVLVVPAILLGKALVEELGELLSHAGMAGFDPGRAIATVQSFLPEWAHRWLS 149

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
            +   +L    L+ P++L+      L   G+  I       G   L   L++  M+   F
Sbjct: 150 DLGLGDL---GLADPETLRQRITRGL-AGGLQAIAPQILNVGQGALGLFLTLGVMLYLTF 205

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F  RDG  I+++++     L     +++      V+R+T  G   IA+ +G + G  +W+
Sbjct: 206 FLLRDGRGIAERIERALP-LPALQRRRLLSEFVSVVRATVKGSMTIAVVQGGIGGFTFWM 264

Query: 236 AGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
            G+P  +  G+   + ++ P  G    +   SIYLL  G ++    LFL G   +  +D 
Sbjct: 265 LGLPGALLWGLAMGVFSLFPAVGTGFIWVPASIYLLATGAVWKGVILFLCGFFVISTIDN 324

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            +RP LVG   ++P        +GG    G  G  +GPV+ AL   +W      +++  E
Sbjct: 325 VIRPILVGRDTQMPDYIVLISTLGGFNLFGFNGFVLGPVIAALFLSVWDIFGRGVQDEAE 384

Query: 355 K 355
            
Sbjct: 385 N 385


>gi|187919648|ref|YP_001888679.1| hypothetical protein Bphyt_4945 [Burkholderia phytofirmans PsJN]
 gi|187718086|gb|ACD19309.1| protein of unknown function UPF0118 [Burkholderia phytofirmans
           PsJN]
          Length = 360

 Score =  202 bits (515), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 92/346 (26%), Positives = 174/346 (50%), Gaps = 7/346 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEESSTFL 62
           + N +     + + ++L++L+ ++ F A V  A ++    WP+             +T +
Sbjct: 19  LKNQKAASLVLYIGLVLLALWVVRDFIAVVAWAAVLAIALWPLLRKVEGNRWFTGRTTLI 78

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-MWASE 121
           A + T+++  L ++P+       + E  ++      A ++GIP+P ++  +P G   AS 
Sbjct: 79  AAVLTLAIALLVVLPVGVGIAQALREAHDMSDWFKDAQENGIPLPDFIQHLPFGAQQASA 138

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            W  +L+ P    +     +K      +      FG           FM+I LF  ++ G
Sbjct: 139 WWQANLAQP----LRGSAAMKGLHSTTVMTLGRHFGARAAHAVAVFGFMLITLFVIFQAG 194

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +S  L       F     ++   +   +R T  G+ ++ +GEG +LG AY++ G+P  
Sbjct: 195 PRLSSSLLKGVRRGFGEDGAQLLLRMATAVRGTVSGLVVVGLGEGALLGVAYFVTGLPHV 254

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             L ++TAI AM+P  AP++F   +++L+ +G++     L ++G++ +FI +  +RP L+
Sbjct: 255 ALLALVTAIAAMLPFCAPLTFGLAALWLVSQGSVAAGVGLAVFGSVVVFIAEHFVRPVLI 314

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           G   +LPFL   FG++GG  T GLLG+FIGP LM ++ V+W + + 
Sbjct: 315 GNSTRLPFLLVLFGILGGAETFGLLGIFIGPALMTVLMVLWTDLVR 360


>gi|218548727|ref|YP_002382518.1| inner membrane protein [Escherichia fergusonii ATCC 35469]
 gi|218356268|emb|CAQ88885.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia fergusonii ATCC 35469]
 gi|324113453|gb|EGC07428.1| inner membrane protein ydiK [Escherichia fergusonii B253]
          Length = 370

 Score =  202 bits (515), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 66/340 (19%), Positives = 136/340 (40%), Gaps = 7/340 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F   +  A  +   +WP+            +   ++ T+ ++ +
Sbjct: 18  LFLAIMIVACLWIVQPFILGITWAGTVVIATWPVLLRLQKILFGRRSLAVLVMTLLLVMV 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQS 132
           FI+P+  L    +     L+ K + +    +P   WL+ IP  G      W   L    +
Sbjct: 78  FIIPIALLVNSIVDGSGPLI-KAISSGDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGT 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  ++Q +    
Sbjct: 137 AIMAKVRPYIGTTTTWFVGQAAHLGRFMVHCALMLLFSAL----LYWRGEQVAQGIRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  
Sbjct: 193 TRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G+    T L +W    +  +D  +RP L+     LP +  
Sbjct: 253 LVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSG-VVGTLDNVIRPMLIRMGADLPLILI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             G++GG+   G++GLFIGPVL+A+   ++   +  +   
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVLLAVTWRLFAAWVDEVPPP 351


>gi|317047270|ref|YP_004114918.1| hypothetical protein Pat9b_1040 [Pantoea sp. At-9b]
 gi|316948887|gb|ADU68362.1| protein of unknown function UPF0118 [Pantoea sp. At-9b]
          Length = 367

 Score =  202 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 145/351 (41%), Gaps = 7/351 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
             G    ++  + +     L  +F+ +  A I+     P+ S    K  + +   +++  
Sbjct: 7   NIGFFIVILAIVTVAFFDVLTPYFSAIFWAAILAVIFHPLKSLLRQKMGDRNGLASLVTL 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVL-ANQHGIPVPRWLSDIPGGMWASELWTKH 126
           + +  +   PL  +    ++E+  + +K+   ++Q           +P   WA    ++H
Sbjct: 67  LIICLIVFTPLAIVTSSLVVELNTVYNKLQNNSSQFPTVFADLFQHLP--DWARNYLSEH 124

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
             +  +      +     G  ++       G     + +    M+  LFF  +DG  +  
Sbjct: 125 HLNNAAQIQEKLSSFALKGGQYMAGSVFVIGKGTFTFTVGFGVMLYLLFFLLKDGAWLVN 184

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +      L       +      V R+T  G  ++A+ +G++ G A+W+  +   +  G 
Sbjct: 185 LILEALP-LSTHVKHHLLLKFAAVSRATVKGTVVVAVVQGILGGLAFWITDIDGSLLWGA 243

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           + A +++IP  G+ I +   +I+    G ++    L  +  + + +VD  LRP LVG   
Sbjct: 244 LMAFLSLIPAIGSAIIWVPAAIFFFATGALWKGLFLVGFFVVVVGLVDNILRPLLVGKDT 303

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           K+P        +GG+   G+ G  IGP++ AL    W   +++ ++N++ +
Sbjct: 304 KMPDYLILIATLGGMEVYGINGFVIGPLIAALFIACWN--LLSGRDNRDNV 352


>gi|284006304|emb|CBA71539.1| putative inner membrane protein [Arsenophonus nasoniae]
          Length = 369

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 66/337 (19%), Positives = 133/337 (39%), Gaps = 6/337 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             I+ +I    + L+ F    L A ++   +WP++    SK        ++  T+ V+ L
Sbjct: 18  IAILLMITACFWVLRPFILGFLWAGMVVIATWPLFKKIESKLWHKKWLASIAMTLIVILL 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQS 132
           F++P   L    +     L+       +  +P   WL ++P  G      W   +++  +
Sbjct: 78  FVIPFAILIGSIIQNSGPLIEWAKSPAEIRLPELLWLKNLPFIGNKLFYGWHTLVANGGN 137

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             I            +    A   G       + ++F  +     +  G S+   +    
Sbjct: 138 TLISKLQPYVGEATSWFLAQAINAGRFMFHLIVMLLFSAL----LFLKGESVISSIRHFA 193

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    LA VP    L ++  +  
Sbjct: 194 IRLAGTRGDMAILLAGQSIRAVALGVVVTALIQAIISGIGLALADVPYAAILTILIFVCC 253

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +   G  +      I+L   G+   A  + +W  I +  +D  LRP L+     L  +  
Sbjct: 254 VAQLGPLLIMVPSIIWLFWSGDTSWAIIMIVWS-IIVATMDGVLRPILIKMGANLSMILI 312

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
             G++GG+ + G++GLFIGPV++A+   +    +  +
Sbjct: 313 LIGVIGGILSFGVIGLFIGPVVLAVSHNLLTAWMNDV 349


>gi|240141401|ref|YP_002965881.1| hypothetical protein MexAM1_META1p5000 [Methylobacterium extorquens
           AM1]
 gi|240011378|gb|ACS42604.1| Conserved hypothetical protein, putative inner membrane protein,
           putative permease [Methylobacterium extorquens AM1]
          Length = 359

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 103/333 (30%), Positives = 169/333 (50%), Gaps = 7/333 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK--EESSTFLAVIATVSVMCLFIVPLLF 80
            LY L GF   ++ A+++    WP++     +      +     + T  V  + ++P+  
Sbjct: 30  GLYILSGFLRALVWAVVLAIALWPLFVRAHRRFPPGRHNILWPAVFTGLVALVLLLPIAV 89

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA-SELWTKHLSHPQSLKILSET 139
           L      E  +L++    A ++GIPVP +++ +P G  A ++ W  HL+H      LSE 
Sbjct: 90  LAVEAGREAHDLLAYAREAERNGIPVPDFVARLPYGAAAVTDWWNAHLAHAGLAHELSER 149

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
              T+  D         G   +   +   F ++ALFF +R+G ++  Q       LF   
Sbjct: 150 LNTTSNRDL----TRSLGAGLVHRAVLFGFCLLALFFLFREGDTVIAQSLRASHRLFGPR 205

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            ++++R +   +  T  G+ ++ IGEG +LG  Y  AGVP  V  G +TA+ AMIP GAP
Sbjct: 206 GERVARQMVASVHGTVDGLVLVGIGEGFLLGIVYAFAGVPHPVLFGALTAVAAMIPFGAP 265

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           ++F   ++ LL  G +  A  +   G +  F+ D  +RP L+GG  +LPFL    G++GG
Sbjct: 266 LAFGLAAVLLLAGGAVVPAAIVVAAGFVVTFVADHFVRPALIGGTTRLPFLWVLLGILGG 325

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           V T GLLGLF+GP +MA + ++W+E      E 
Sbjct: 326 VETFGLLGLFVGPAVMAALILLWREFTEGSGEP 358


>gi|307315631|ref|ZP_07595168.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
 gi|306898698|gb|EFN29361.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
          Length = 371

 Score =  201 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 88/341 (25%), Positives = 157/341 (46%), Gaps = 7/341 (2%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           +     L  F +  L A +I F++WP Y  F           A   TV V+ + + PL  
Sbjct: 22  IGCTLVLWPFLSATLGAAVICFSTWPAYRLFERAVGGYRALAAAAMTVLVVVVIVAPLAL 81

Query: 81  LFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSE 138
           L       +  LV+ V    + G P  P W+  +P  G   +  W     +  +  I  +
Sbjct: 82  LATTLADNISSLVAGVTNVLEQGPPAPPDWVRGLPIAGEGLATYWEGLAHNAPAFTIELK 141

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             +           A   G +F    L +   I   FF +  G  ++     + E +  A
Sbjct: 142 KVIGP-----FADVALIGGTLFGAGLLELALSIFIGFFLFLHGRRMTALTRQIAERVAGA 196

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             +++  +V   +     G+   A+ +GL+ G  +W+AGVP  + LG +T +++ +P G 
Sbjct: 197 RARRLLSVVGVTVTGVVYGLIGTALAQGLLAGVGFWIAGVPQALLLGCLTFVLSFVPAGP 256

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P  +  V+++L ++ +++    + +WG + +  +D  LRP+L+G    LP L   FGL+G
Sbjct: 257 PFVWGPVALWLFMQESVWWGIFVAIWGLLLVSSIDNFLRPYLLGRNTNLPVLLGLFGLIG 316

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           GV   GL+GLF+GP L+A+   +++E I A  E + +  S+
Sbjct: 317 GVLAFGLIGLFLGPTLLAVAHSLFREWIAAELEERRQPPSS 357


>gi|85858614|ref|YP_460816.1| hypothetical protein SYN_02943 [Syntrophus aciditrophicus SB]
 gi|85721705|gb|ABC76648.1| hypothetical membrane protein [Syntrophus aciditrophicus SB]
          Length = 363

 Score =  201 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 76/357 (21%), Positives = 149/357 (41%), Gaps = 8/357 (2%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
             L    +    I  +I  SL+ L+ F   ++ +++I   +WP      +          
Sbjct: 9   PDLTRIILQILWIGILIASSLWILRPFLPSLIWSVMIVVATWPFMLKMETCLWRKRGLAV 68

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPG-GMWASE 121
               ++++ LF+VP        +     + + V       +P +P WLS +P  G   + 
Sbjct: 69  AAMMIAMLTLFVVPFSLAIVAIIDNADRIAAWVTSFQGQALPALPDWLSGVPVVGSKLNT 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            W    + P+ +      +       F+   A   G+I L++ L++I   I     Y +G
Sbjct: 129 AWEGVRTGPEGIAARLVPYAGKLLSWFL-SQAGSVGIIALEFLLTVIIAAI----LYVNG 183

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            + S+ +      L     + ++ +  K +R   LG+   A+ + L+ G    +AGVP+ 
Sbjct: 184 ETASKGVFQFARRLGGHRGEDVAMLAAKTVRGVALGVVGTALVQSLLGGIGLSVAGVPAA 243

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             L  +  ++ +   G  +      I+L   G     T L +W  I    +D  LRP L+
Sbjct: 244 TVLTGVMFMLCIAQLGPGLVLFPAVIWLYWSGQTTWGTMLLVW-TIFACTIDNLLRPILI 302

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                LP L  F G++GG+ + G++GLFIGPV++++   +    +   + +  +  +
Sbjct: 303 KKGADLPMLLIFAGVIGGLASFGIVGLFIGPVVLSVTLRLLGVWVADTEVSPSREDA 359


>gi|71909098|ref|YP_286685.1| hypothetical protein Daro_3486 [Dechloromonas aromatica RCB]
 gi|71848719|gb|AAZ48215.1| Protein of unknown function UPF0118 [Dechloromonas aromatica RCB]
          Length = 375

 Score =  201 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 75/349 (21%), Positives = 149/349 (42%), Gaps = 7/349 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             +    I+ +I +S++ L  F A  + A++I   +WP++ S  S+         V+ +V
Sbjct: 10  NTLAILCILGLIGLSVWVLLPFLAATVWAVMIVVATWPLFKSLESRLGNRRAPAVVLMSV 69

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP-RWLSDIP-GGMWASELWTKH 126
           +++ L ++PL       +    +L +       +G+P P  W+  +P  G   +  W + 
Sbjct: 70  AMLLLLVLPLWLAVDTIIEHSGQLAAAGKSMAANGLPPPPAWVKTLPLVGDRVASAWAQL 129

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            +   S  +   T    +   ++   A   G + + + L +    I     Y  G + ++
Sbjct: 130 DAAGTSGIVTKVTPYAADTGKWVLAQAGSVGGMLIQFLLVVTIAAI----LYSGGETGAR 185

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
                G  L     +    +  + IR   LG+ + AI + ++ G    +AGVP    L  
Sbjct: 186 TARRFGRRLAGDRGENSIILAGQAIRGVALGVGVTAIVQTVLGGVGLAVAGVPFASLLSA 245

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +  ++ +   G  +       ++   G+   AT L +W  + +  +D  LRP L+     
Sbjct: 246 VMLMLCIAQIGPMLVLLPAVGWMYWMGDSGWATLLLVWS-LIVGSLDNFLRPMLIKRGAD 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           LP L  F G++GG+ + GL+G+F+GPV++A+   +    I       E 
Sbjct: 305 LPLLLIFAGVIGGMLSFGLIGIFVGPVVLAVTYTLTLAWIEDALGKDEP 353


>gi|296102735|ref|YP_003612881.1| putative inner membrane protein [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295057194|gb|ADF61932.1| putative inner membrane protein [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 371

 Score =  201 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 66/354 (18%), Positives = 138/354 (38%), Gaps = 8/354 (2%)

Query: 1   MRETMLNPQGIMRWMIM-FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           +R+     Q ++  + +  +I+  L+ ++ F      A  +   +WP+            
Sbjct: 4   LRQPRDVAQILLSVLFLALMIIACLWIVQPFILGFAWAATVVVATWPVLLRLQKLLFGRR 63

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMW 118
               ++ T+ +  LFI+P+  L    +     ++ + V +    +P   WL+ IP  G  
Sbjct: 64  GLAVLVMTLLLFLLFIIPIALLVNSLVDSSGPVI-RAVTSGDLTLPDLAWLNSIPVVGAK 122

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
               W   L    S  +            +    A+  G   +   L ++F  +     Y
Sbjct: 123 LYSGWHSLLEMGGSALMAKVRPYIGTTTTWFVGQAAHIGRFMMHCALMLVFSAL----LY 178

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
             G  ++  +      L          +  + +R+  LG+ + A+ + ++ G    ++GV
Sbjct: 179 WRGEQVALGVRHFATRLAGKRGDAAVLLAAQAVRAVALGVVVTALVQAVLGGIGLAISGV 238

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P      V+  +  +   G  +      I+L   G+    T L +W    +  +D  +RP
Sbjct: 239 PYATVFTVVMLMTCLAQLGPLLVLVPSIIWLYWTGDTTWGTVLLVWSC-VVGTMDNVIRP 297

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            L+     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  +   
Sbjct: 298 ILIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEVPPP 351


>gi|237747231|ref|ZP_04577711.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
 gi|229378582|gb|EEO28673.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
          Length = 365

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 76/341 (22%), Positives = 143/341 (41%), Gaps = 5/341 (1%)

Query: 5   MLNPQGIMRWMIMFI---ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           M  P+   +  I+F+    +   + L  F+  V    I+     P+   F++K       
Sbjct: 1   MKQPEPHGKVFILFLSVVTVAFFWILLPFYGAVFWGFILAVMFMPLNDRFLAKIPGRKNL 60

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A++     + + I+PL+ +      E   L  K++  +       +++           
Sbjct: 61  AALLTLSVCLLIVIIPLIVVIIALTQESAALYQKILTRSISFDASFQFIVSKLPDWAIDL 120

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L    ++     +    + L      +I       G   LD+ +S   M+  LFF  RDG
Sbjct: 121 LNHSGITTLAEFQQKISSGL-LQASQYIAGKLFVIGQNILDFAISFGLMLYLLFFLLRDG 179

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             ++ ++  L   L       +      VIR+T  G  ++AI +G + G  +W  G+ + 
Sbjct: 180 NELAARIRKLIP-LANEQKTLLLNKFTGVIRATVKGNLVVAIVQGALGGLIFWFLGIEAA 238

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +  G I ++++++P G+ + +  V+IY L  G +     L  +G + + ++D  LRP LV
Sbjct: 239 LLWGAIMSVLSLLPAGSGVIWVPVAIYFLATGAVLKGVILLAFGVLVIGLIDNFLRPLLV 298

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           G   ++P        +GG+   GL G  IGPV+ AL    W
Sbjct: 299 GKDTQMPDYLVLVSTIGGMALFGLNGFVIGPVIAALFITAW 339


>gi|300715132|ref|YP_003739935.1| conserved uncharacterized protein [Erwinia billingiae Eb661]
 gi|299060968|emb|CAX58075.1| conserved uncharacterized protein [Erwinia billingiae Eb661]
          Length = 369

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 69/333 (20%), Positives = 135/333 (40%), Gaps = 6/333 (1%)

Query: 14  WMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
            +I+FI+ V+    L  +++ VL A I+     P+ +       + +        V +  
Sbjct: 12  ILILFIVTVAFLDVLGPYYSSVLWAAILAVIFHPMKTKLRQMMGDRNGLATFATLVVICL 71

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
           +   PL  L     +E   + +K+   N Q    +   +  +PG  WA    T+H     
Sbjct: 72  IVFTPLAILVSSMAIEFNVVYTKLQSNNMQLPTIMADVMQHLPG--WARSFLTEHQLDTA 129

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +      + +   G  ++       G     + +    M+  LFF  +DG  +   +   
Sbjct: 130 AQIQQKLSQVAMQGGQYLAGSVFLIGKSTFGFTVGFGIMLYLLFFLLKDGAYLVNLILEA 189

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L       +      V R+T  G  ++A+ +G +   A+W+ G+   +  G + A +
Sbjct: 190 LP-LSSYVKHHLFMKFAAVSRATVKGTVVVAVVQGALGALAFWITGIDGILLWGALIAFL 248

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           ++IP  G+ I +   +I+    G ++    +  +  + + +VD  LRP LVG   K+P  
Sbjct: 249 SLIPAVGSAIVWVPAAIFFFASGVLWKGLFIVGFFVVVIGLVDNILRPLLVGKDTKMPDY 308

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                 +GG+   G+ G  IGP++ A+    W 
Sbjct: 309 LILIATLGGMEIYGINGFVIGPLIAAMFIACWN 341


>gi|183598849|ref|ZP_02960342.1| hypothetical protein PROSTU_02280 [Providencia stuartii ATCC 25827]
 gi|188021055|gb|EDU59095.1| hypothetical protein PROSTU_02280 [Providencia stuartii ATCC 25827]
          Length = 371

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 70/343 (20%), Positives = 134/343 (39%), Gaps = 6/343 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             I+ +I    + L  F    + A ++   +WP+     ++        A++    ++ L
Sbjct: 18  AFIILMIAACFWVLNPFILGFVWAGMMVIATWPLLLRLEARLWNKRWLAALVMVSLILLL 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           F++PL  L    +     L+      N   +P   WL+ +P  G      W   ++   +
Sbjct: 78  FVIPLGILIGSIIQNSTPLIELAKSPNSLRLPDLEWLNSVPFVGEKIYYAWHSLVASGGN 137

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A   G       L ++F  +     Y  G S+   +    
Sbjct: 138 ALLAKVQPYLGQAAGWFLAQAINAGRFMFHLALMLLFSGL----LYLKGESVMLGIRHFA 193

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + +V G    L+G+     L V+  I  
Sbjct: 194 VRLAGIRGDAAVVLAAQSIRAVALGVVVTALIQAIVGGVGLALSGISYAAILTVLLFICC 253

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +   G  +      I+L   G+   A  L +W A  +  +D  LRP+L+     LP +  
Sbjct: 254 VAQLGPLLIMVPSVIWLFWTGDTTWAIILAVW-AAVVATMDGVLRPWLIKMGADLPMVLI 312

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             G++GG+ + G++GLFIGPV++A+   + K  +  +    E 
Sbjct: 313 LVGVIGGILSFGMIGLFIGPVVLAVSYSLLKAWMNEVAIPNEN 355


>gi|294010794|ref|YP_003544254.1| putative permease [Sphingobium japonicum UT26S]
 gi|292674124|dbj|BAI95642.1| putative permease [Sphingobium japonicum UT26S]
          Length = 369

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 75/336 (22%), Positives = 140/336 (41%), Gaps = 5/336 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G+    ++ + +     ++ FFA +L  +I      P+    +          A +  + 
Sbjct: 14  GVFLGFVLIVSVAFALVIEPFFAAILWGVIAAILFAPVNQGLVGMMPRHRNSAAALTLLL 73

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLS 128
           ++ L IVP + L    + E     +KV            ++ + +P   WA+    +   
Sbjct: 74  IVALVIVPAIILAMALVQEATLFYAKVQTGEINFARMFAQFQASLP--RWAAAFLERLGI 131

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +      +   T+    +   A + G     + +++  M+   FF  RDG  ++  +
Sbjct: 132 TNFAAVREMLSEGITSSFRTVATQALQIGQSAFSFLMALGVMLYLTFFLLRDGPKLAAMV 191

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D        AY + + +    VIR+T  G  ++AI +G++ G  +W  G+P  +  GV+ 
Sbjct: 192 DRAAPMRT-AYRQALMQQFVIVIRATIKGSIVVAIVQGVIGGVVFWALGLPGALLWGVLM 250

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
              ++IP  G  + +  V+IYL + G +     L   G   + +VD  LRP LVG   ++
Sbjct: 251 GAFSLIPAVGTGLVWVPVAIYLFVTGAVVEGLILAFCGMFVIGMVDNILRPILVGRDTRI 310

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           P        +GG+   G  G+ IGPV+ AL    W 
Sbjct: 311 PDYVVLITTLGGIDLFGFNGIVIGPVIAALFIATWN 346


>gi|53804374|ref|YP_113737.1| hypothetical protein MCA1275 [Methylococcus capsulatus str. Bath]
 gi|53758135|gb|AAU92426.1| putative membrane protein [Methylococcus capsulatus str. Bath]
          Length = 354

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 103/331 (31%), Positives = 169/331 (51%), Gaps = 7/331 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISK--KEESSTFLAVIATVSVMCLFIVPLLF 80
             + L GF  P+  A+++ FT WP Y     +        +L +  T+ +M L +VP  F
Sbjct: 24  GFWVLHGFIMPIAWAVVLAFTVWPWYEHVYQRAPCWMRGGWLPLAMTLLMMVLLMVPATF 83

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQSLKILSET 139
                  E++ L   ++     GI  P WL  +P  G W  E W++   +P+++    + 
Sbjct: 84  GVLVLGHEVQMLHRLLIKVQSSGIGAPDWLIQLPWVGGWIKETWSETFGNPETI----KN 139

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            L   G+  +  +        L   +S    ++ALFF +RDG  + +Q+      LF + 
Sbjct: 140 ALNALGMGTVFSYTRDLAAQVLHRFMSGFVTLLALFFIFRDGHGLGRQILDRSVRLFGSA 199

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             + +R     +R T  GM ++ IG+G+VLG  YW  G+   V LG +TA++A++P  A 
Sbjct: 200 GARYARHAVTAVRGTVNGMLLVGIGKGVVLGLGYWAVGLSQPVLLGTLTAVVALVPFAAK 259

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + F A SIYL+++G+      L ++G I   I D  +RP L+GG   +PFLPT  G+ GG
Sbjct: 260 LVFGAASIYLIVQGHAMAGIVLVVYGFIITLIADNYVRPTLIGGAANIPFLPTLLGIFGG 319

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           V  MG +GLFIGP +MA++  +W++     +
Sbjct: 320 VEAMGFVGLFIGPTVMAILISLWRDWNDETR 350


>gi|190410040|ref|YP_001965564.1| hypothetical protein [Sinorhizobium meliloti]
 gi|125631070|gb|ABN47071.1| hypothetical protein [Sinorhizobium meliloti SM11]
          Length = 347

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 68/311 (21%), Positives = 142/311 (45%), Gaps = 7/311 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
               L+ F + +L A +I F++WP+Y         + +  A + T+ V  + + P   + 
Sbjct: 24  CALVLQPFLSAILWAAVICFSTWPVYQRCERAVGGNKSLAAAVMTLLVALVLVAPFAVMV 83

Query: 83  YYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPG-GMWASELWTKHLSHPQSLKILSETF 140
                 +  L++ V    + G P  PRW++ +P  G   +  W     +  +     +  
Sbjct: 84  PTLTDNVSNLLTAVNQILEQGPPAPPRWVAGLPVIGENLAAYWESLAHNAPAFSTELKKL 143

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           +       +       G +     L +   +   FFF+  G  ++  + ++GE       
Sbjct: 144 IGPATNLAVAS-----GAVLGAGLLELGLSVFIAFFFFLHGRRMAAYVRAVGERFAGPRS 198

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           +K+  +V   ++    G+   A+ + ++ G  +W+AGVP  + LG +T +++ +P G P+
Sbjct: 199 RKLLTVVGATVKGVIYGLIGTALAQAVLAGIGFWIAGVPQALLLGFLTFVLSFVPIGPPL 258

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            + +V+++  ++G ++    +  WG I +  +D  +RP+++G    LP L   FG +GGV
Sbjct: 259 VWGSVALWFFVQGAVWWGLFVAAWGLILVSSIDNVIRPYVLGKTNNLPVLLGLFGFLGGV 318

Query: 321 RTMGLLGLFIG 331
              G +G+F G
Sbjct: 319 VAFGFIGIFWG 329


>gi|330828110|ref|YP_004391062.1| hypothetical protein B565_0410 [Aeromonas veronii B565]
 gi|328803246|gb|AEB48445.1| Putative membrane protein [Aeromonas veronii B565]
          Length = 361

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 73/339 (21%), Positives = 139/339 (41%), Gaps = 6/339 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+     L+ F   ++ A +I   +WP+            T  A+  T+ ++ +
Sbjct: 16  LFLSILIISCFLVLQPFLPALVWATMITIATWPLMLMVQRLLWGKRTLAALFMTLVLLLM 75

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           F++PL         +   L+      +Q   P   WL  IP  G    + W + L+    
Sbjct: 76  FVIPLFMTLANVAEKAPMLIELGTHISQSPPPELLWLQQIPLVGDKLYDFWQQILASGGQ 135

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           +              ++   A   G++F+ + L++    +     Y  G  ++  +    
Sbjct: 136 VLFAKLAPYFGQTARWLASQAGNLGLLFVHFLLTVGICGV----LYHSGEVVATGIRRFA 191

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L        + +  + IR+  +G+ + A+ +  V G    +AG+P  + L V+  ++ 
Sbjct: 192 HRLAGQRGDNATVLASQAIRAVAMGVVVTALVQSSVAGVGLLIAGIPYAMVLVVVMFLLI 251

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +   G      A   YL   G+    T L +W  I    +D  LRPFL+     LP +  
Sbjct: 252 VAQIGPFPVLLACIGYLYWSGDTTWGTFLLVWSLIA-GTMDNFLRPFLIKRGADLPLILI 310

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             G++GG+ TMG++GLFIGPV++A+   +    I    +
Sbjct: 311 LVGVIGGLLTMGIIGLFIGPVVLAVGYTLLDAWIKEDDQ 349


>gi|148264677|ref|YP_001231383.1| hypothetical protein Gura_2633 [Geobacter uraniireducens Rf4]
 gi|146398177|gb|ABQ26810.1| protein of unknown function UPF0118 [Geobacter uraniireducens Rf4]
          Length = 365

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 75/339 (22%), Positives = 140/339 (41%), Gaps = 7/339 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             I  +   S + L+ FF  ++ A +I  T+WP+      +            TV+++ +
Sbjct: 18  LFIGILTAASFWILRPFFTALVWATMIVVTTWPLMLGVQKRLRGKRALAVTAMTVALLLV 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVL-ANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQ 131
           FIVP        +    E+V      A     P P W+  +P  G   +  W    +  Q
Sbjct: 78  FIVPFTLAIISIIERSDEIVGWSKSLATFTMPPPPEWVEQLPLAGPKLAARWHYLTTVGQ 137

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +             + ++   A   GM+ + + L++I   +     + +G   +  +   
Sbjct: 138 AELSERLAPHAKEIVSWLVTRAGNVGMMIVQFLLTVIISAV----LFANGEKAASGICLF 193

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L     +    +  K IR   LG+ + A+ + L+ G    +AG+P+   L V+  I+
Sbjct: 194 ARRLGDRNGEDAVILAAKAIRGVALGVVVTAVIQSLLAGIGLVVAGIPAPGLLTVVIFIL 253

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +   G  +    V ++L         T + +WG I +  +D  +RP L+     LP L 
Sbjct: 254 CVAQVGPGLVLIPVIVWLYWVDQALWGTAMIVWG-IIVGTIDNFIRPVLIKKGADLPLLL 312

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            F G++GG+   G++GLFIGPV++A+   +    I   +
Sbjct: 313 IFAGVIGGLIAFGVIGLFIGPVMLAVTYTLLGAWITRGR 351


>gi|289164173|ref|YP_003454311.1| predicted permease [Legionella longbeachae NSW150]
 gi|288857346|emb|CBJ11174.1| putative predicted permease [Legionella longbeachae NSW150]
          Length = 359

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 101/338 (29%), Positives = 177/338 (52%), Gaps = 3/338 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + I   + + II +SL+ +  F   ++ A II   ++P+Y  +           A++ T
Sbjct: 6   KELISMGLTVGIIALSLFIIHRFIPSMIWASIIVIATYPLYERWRRFFGSKDDLSALLFT 65

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKH 126
             +  L ++PL +L    + E++  ++ +   N+ G   P +L + P  G      W  +
Sbjct: 66  TLIGLLLLLPLSWLVGLLIKELQIFINFLQSLNEKGGMAPEFLKNFPWIGSDLVVYWDNN 125

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +  P  +K L      +        +  + G       + + F +++LFFFYRDG  +  
Sbjct: 126 IGKPGMIKGLLSNIHLSLTPT--SYYVKQIGSNLAHRSVQVGFTLLSLFFFYRDGDRLIT 183

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           Q+  +GE+     W + +  +PK +R+T  G  ++ +G G ++G  Y L G P+   +G 
Sbjct: 184 QIYLVGENCLGKRWFRYADRLPKALRATVNGTIVVGLGVGFLMGVCYGLVGFPAPTLVGF 243

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           ITA+ AMIP   PI F  V++ L   G++F A  + +WG + +F+ D  ++P L+GG I+
Sbjct: 244 ITALAAMIPFVVPIVFITVAMILFAFGSMFGAIAVLVWGTLVMFVADHFIKPALIGGAIE 303

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           LPFL   FG++GGV T+GLLGLF+GP++M L   +W+E
Sbjct: 304 LPFLAVLFGILGGVETLGLLGLFVGPLVMVLFVTLWQE 341


>gi|148258479|ref|YP_001243064.1| hypothetical protein BBta_7289 [Bradyrhizobium sp. BTAi1]
 gi|146410652|gb|ABQ39158.1| putative membrane protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 353

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 78/338 (23%), Positives = 150/338 (44%), Gaps = 3/338 (0%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           L   + L  F+  +L +++      P+Y       ++  +  A    + ++ L I+PL  
Sbjct: 18  LAFGWILWPFYGAILWSVVAAVVFAPLYRRLSQAMQQRHSLAAAATVMIIVTLVILPLTL 77

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L      E   +  +V       +   + + D      A  L    L+    ++    + 
Sbjct: 78  LSVTLAREASNVYGRVQSGELDLVRSFQQILDGLPDWMARVLDHFGLAILGGVQEKLSSV 137

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           L   G  F+       G     + +++  M+  LFF +RD  ++S+++      L P   
Sbjct: 138 LLK-GSQFLAAQTLDIGQRTFGFLVNLFVMLCLLFFLFRDENTLSKRVKD-AIPLRPERL 195

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
             +      VIR+T  G  ++A+  G + G  + L G+ + +   V+ A ++++P  G+ 
Sbjct: 196 DALLLKFTIVIRATVKGNLLVALLLGALGGLMFSLLGINASLLWAVLIAFLSLLPAIGSG 255

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +  V++YLL  G I+    L ++GA+ + +VD  LRP LVG   K+P    FF  +GG
Sbjct: 256 LVWVPVAVYLLATGAIWQGVVLIVYGALVIGLVDNLLRPMLVGKDTKMPDYVVFFSTLGG 315

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           +   G+ G  IGPV+ A+    W+   +  + N + I+
Sbjct: 316 IEAFGINGFVIGPVIAAMFIAAWETFSVLRQRNDDAIA 353


>gi|89898842|ref|YP_521313.1| hypothetical protein Rfer_0020 [Rhodoferax ferrireducens T118]
 gi|89343579|gb|ABD67782.1| protein of unknown function UPF0118 [Rhodoferax ferrireducens T118]
          Length = 358

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 73/334 (21%), Positives = 145/334 (43%), Gaps = 5/334 (1%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +++ + +   + L  F+  ++   II     P+Y   +++ +   T  A++  + V+ L 
Sbjct: 20  LMVAVSIALGWILLPFYGTIMWGAIIALLFTPVYRRLLARLKWRRTPAALLTLLLVLLLL 79

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           ++P   L      E  ++  ++     +  +        +P   W + L         + 
Sbjct: 80  VLPFALLTAALAREAAQVYQQLQSGELNPSLYFQGLFDALP--DWLTALLDSFGLVNFAA 137

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                      G  F+   A   G I  ++  S+   +   FF  RDG S+++ L     
Sbjct: 138 LQRRLIAALAQGSQFLATQAMGIGQITFEFVTSLFITLYLAFFLIRDGDSVARALRHAVP 197

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            L P + K++      VIR+T  G  ++A+ +G + G A+W  GV   +   V+ A +++
Sbjct: 198 -LAPEHKKELIGKFTTVIRATVKGNLLVAVIQGALGGIAFWFLGVGGALLWAVLMAFLSL 256

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +P  GA + +  V+IY  + G  +    L  WG + + ++D  LRP LVG   ++P    
Sbjct: 257 LPAVGAGLVWLPVAIYFFLTGATWQGIALCAWGVLVIGLIDNLLRPILVGKDTRMPDYVV 316

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
               +GG+   G+ G  IGP + A+   +W+  +
Sbjct: 317 MITTLGGMVVFGINGFVIGPAIAAMFMAVWEIYV 350


>gi|295096092|emb|CBK85182.1| Predicted permease [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 371

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 67/354 (18%), Positives = 138/354 (38%), Gaps = 8/354 (2%)

Query: 1   MRETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           +R+     Q ++  + + I I+  L+ ++ F      A  +   +WP+            
Sbjct: 4   LRQPRDVAQILLSVLFLAIMIIACLWIVRPFVLGFAWAATVVVATWPLLLRLQKLLFGRR 63

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMW 118
               ++ T+ +  LFI+P+  L    +     ++ + V +    +P   WL+ IP  G  
Sbjct: 64  GLAVLVMTLLLFLLFIIPIALLVNSLVDSSGPVI-RAVTSGDMTLPDLAWLNSIPVVGAK 122

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
               W   L    S  +            +    A+  G   +   L ++F  +     Y
Sbjct: 123 LYSGWHSLLEMGGSALMAKVRPYIGTTTTWFVGQAAHIGRFMMHCTLMLVFSAL----LY 178

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
             G  ++  +      L          +  + +R+  LG+ + A+ + ++ G    ++GV
Sbjct: 179 WRGEQVALGVRHFATRLAGKRGDAAVLLAAQAVRAVALGVVVTALVQAVLGGIGLAISGV 238

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P      V+  +  +   G  +      I+L   G+    T L +W    +  +D  +RP
Sbjct: 239 PYATIFTVVMLMTCLAQLGPLLVLVPCIIWLYWTGDTTWGTVLLVWSC-VVGTMDNVIRP 297

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            L+     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  +   
Sbjct: 298 LLIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEVPPP 351


>gi|52840967|ref|YP_094766.1| transmembrane permease [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|54296757|ref|YP_123126.1| hypothetical protein lpp0796 [Legionella pneumophila str. Paris]
 gi|52628078|gb|AAU26819.1| transmembrane permease [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|53750542|emb|CAH11944.1| hypothetical protein lpp0796 [Legionella pneumophila str. Paris]
          Length = 350

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 101/338 (29%), Positives = 174/338 (51%), Gaps = 3/338 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + I   + + I++ SLY +  F   ++ A II   ++P+Y+ +           A + T
Sbjct: 6   KELISIGLTVSIVIFSLYIVHKFIPSMIWAAIIVIATYPLYTRWRKLFGNKHNTSAFLFT 65

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKH 126
             +  LF++PL +L    + E +  ++ +   N+ G   P +  +IP  G    + W  +
Sbjct: 66  TLMGLLFLIPLSWLIGILIKESQLFINFLQHINKEGGAAPEFFKNIPLVGDDLIQYWDVN 125

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +  P ++K        T        +  + G+        + F ++ LFFFYRDG  +  
Sbjct: 126 IGKPGNIKEFLSNLHVTLTPT--SYYIKQIGVNLAHRSFQVGFTLLTLFFFYRDGDKLLL 183

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           Q+  +GE+     W + S  +P  +R T  G  ++ IG G+++G  Y L G P+    G 
Sbjct: 184 QIQHIGEYCLGDRWFRYSDRLPSALRGTVNGTIVVGIGVGILMGVCYALVGFPAPTLTGF 243

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           ITA+ AMIP   P+ F  V++ LL  G++     + +WG + +F+ D  ++P L+GG I+
Sbjct: 244 ITALAAMIPFVVPVVFIIVALILLSVGSLIGGIIVLVWGTLVMFVADHFVKPVLIGGAIQ 303

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           LPFL   FG++GGV T+GLLGLF+GP++M L   +W+E
Sbjct: 304 LPFLAVLFGILGGVETLGLLGLFLGPMVMVLFVTLWQE 341


>gi|330447452|ref|ZP_08311101.1| conserved hypothetical protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491643|dbj|GAA05598.1| conserved hypothetical protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 361

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 81/356 (22%), Positives = 154/356 (43%), Gaps = 14/356 (3%)

Query: 13  RWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
            W+++  + V+ +     ++ +  P++ A II     P++   ++     +   A+++  
Sbjct: 11  HWLLIIALFVAAFASYKLIEPYLGPIVLAFIISLLFAPLHKRLLALMPTRANTAAMLSCF 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK--- 125
            +  + ++PLL +F   + +   +  +       G   P+ L   P    A     K   
Sbjct: 71  ILTVIIVIPLLIVFSSIVHQGTTVSKESYEWITSGG--PKELFAHPYAQKALGFIDKYSP 128

Query: 126 -HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
            H   PQ +     T     G   +   A   G       ++ + M+  LFF  RD   +
Sbjct: 129 FHNFDPQVIIQKIATTASQVGSQALNISARILGDAT-SILVNFMMMLFVLFFLLRDNDKM 187

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              +  +   L  +   +I   V +V +S  LG  + A+ +G+  G A WL G P  +  
Sbjct: 188 IAAIRHVIP-LSRSQEDEIMNEVEQVAKSAVLGSFLTAVAQGIAGGFAMWLCGFPG-LFW 245

Query: 245 GVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           G + A  ++IP  G  + +   S+YLL+ G    A  L  WG I +  +D  +RP L+ G
Sbjct: 246 GSMMAFASLIPVVGTALIWLPASLYLLLIGQWEWALFLAGWGVIVVGSIDNVVRPLLMQG 305

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              +  L  FF ++GG++  GL+G+  GP++  +  V++K   +  K+  E+   N
Sbjct: 306 SSSMNTLLIFFSIIGGIQLFGLIGMIYGPIIFGVTLVLFKMYEVEFKDFLEQQDKN 361


>gi|188584250|ref|YP_001927695.1| hypothetical protein Mpop_5064 [Methylobacterium populi BJ001]
 gi|179347748|gb|ACB83160.1| protein of unknown function UPF0118 [Methylobacterium populi BJ001]
          Length = 359

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 103/329 (31%), Positives = 171/329 (51%), Gaps = 7/329 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKK--EESSTFLAVIATVSVMCLFIVPLLFLF 82
           Y L GF   ++ AL++    WP+++    +      +     + T  V  L ++P+  L 
Sbjct: 32  YILHGFLRALVWALVLAIALWPLFNRARRRFPPGRHNILWPAVFTGLVAGLLLLPIAGLA 91

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA-SELWTKHLSHPQSLKILSETFL 141
                E  +L++    A ++GIPVP +++ +P G  A +E W  HL+H      ++E   
Sbjct: 92  VEAGREAHDLLAYAREAERNGIPVPDFVAHLPYGAAAVTEWWNAHLAHAGLAHEVTERLN 151

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            T+  D         G   +   +   F ++ALFF +R+G ++  Q     + LF    +
Sbjct: 152 TTSNRDL----TRTLGAGLVHRVVLFGFCLLALFFLFREGDAVVAQSLRASQRLFGPRGE 207

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +++R +   +  T  G+ ++ IGEG +LG  Y LAGVP  V  G +TA+ AMIP GAP++
Sbjct: 208 RVARQMVASVHGTVDGLVLVGIGEGFLLGIVYALAGVPHPVLFGALTAVAAMIPFGAPLA 267

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   ++ LL  G +  A  +   G +  F+ D  +RP L+GG  +LPFL    G++GGV 
Sbjct: 268 FGLAAVLLLAGGAVVPAAIVVAAGFVITFVADHFVRPALIGGTTRLPFLWVLLGILGGVE 327

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           T GLLGLF+GP +MA + ++W+E     +
Sbjct: 328 TFGLLGLFVGPAVMAALILLWRELTEGPE 356


>gi|91782652|ref|YP_557858.1| hypothetical protein Bxe_A3174 [Burkholderia xenovorans LB400]
 gi|91686606|gb|ABE29806.1| Putative membrane protein [Burkholderia xenovorans LB400]
          Length = 371

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 74/355 (20%), Positives = 152/355 (42%), Gaps = 7/355 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+   L  +    + ++ ++  SL  L  F   +L   I+ ++SW +Y    +       
Sbjct: 1   MKSDQLIERLAAVFALIILVGGSLLVLAPFTTALLWGAILSYSSWGLYRRLTAALGGRRK 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMW 118
           + A +  + ++ + + P ++  +     + ++V+ V    + G+P +P W++ IP  G  
Sbjct: 61  WAATLIVLIILIVVLGPFVYAGFAFGARVHDIVALVQRLFEAGLPDLPPWVARIPLVGSS 120

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
               W +  S    L     T     G   +    +            +   I+  FFFY
Sbjct: 121 IEAFWERLTSSNSELIAQLRTLAAPAGKWILAAAIA-----VTHGLGLLALSIVLAFFFY 175

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
             G   +  L++    +       +  +    ++    G+   A+ +G++ G   W+AGV
Sbjct: 176 TGGEGAAAWLNAGMRRVAGERADYLLALAGSTVKGVVYGILGTALVQGILAGFGCWIAGV 235

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P+   LG+ T  +++IPGG  + +   +I+L   G    A  L +WG + + + D  ++P
Sbjct: 236 PAPALLGLATFFLSVIPGGPVVVWLPAAIWLYHGGATGWAIFLVVWGVLVVGMSDNVIKP 295

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L+G    +P +    G++GG    G LG+FIGP L+A+   +  +  +     +
Sbjct: 296 ILIGKNSDMPLILVMLGILGGAFAFGFLGVFIGPTLLAVAYTVLHDWTIGAPAAR 350


>gi|317484069|ref|ZP_07943001.1| hypothetical protein HMPREF0179_00352 [Bilophila wadsworthia 3_1_6]
 gi|316924675|gb|EFV45829.1| hypothetical protein HMPREF0179_00352 [Bilophila wadsworthia 3_1_6]
          Length = 391

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 77/343 (22%), Positives = 140/343 (40%), Gaps = 5/343 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
               +++ +  + L+ +  FF  +  A  IG    P+Y +   K        A I  +  
Sbjct: 12  AFLALLIGVTALFLWMMLPFFDVIFWAATIGILFHPVYRTIAEKWRMGRILSAFITILLC 71

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + L I+PL ++ Y  ++E   L  ++       +    ++  I       + W  +  + 
Sbjct: 72  LVLIIIPLSYILYNCVVEATLLYQRLHSDQNSFV---GYIDRIKDSYPFLQDWLHYAGYD 128

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                   T    +   F+ R     G   L +  ++  ++   FF   DG  I + L  
Sbjct: 129 LERIKSLLTKAALSASSFLARNTVTLGENTLGFLTNLALVLYIAFFLLMDGTKIQELLIK 188

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                     K + R   +V R+T  G  ++A  +G + G  +WL  + + +  GV+   
Sbjct: 189 ALP-FGDHREKLLFRKFAEVTRATVKGSLLVAAAQGALGGVIFWLLDIHAALLWGVVMTA 247

Query: 251 MAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +A+IP  GA + +  V++YLL+ G+ ++   L  +G+  + + D  LRP LVG   KLP 
Sbjct: 248 LALIPVVGAALVWGPVAVYLLLTGDYWDGGILLAYGSTVIGLADNILRPLLVGRDTKLPD 307

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
                  +GG    G+ G   GP L  L   +W+  I     N
Sbjct: 308 FLVLLSTLGGFVFFGMDGFVTGPTLAVLFVTVWQIFIAEFGAN 350


>gi|290509047|ref|ZP_06548418.1| inner membrane protein [Klebsiella sp. 1_1_55]
 gi|289778441|gb|EFD86438.1| inner membrane protein [Klebsiella sp. 1_1_55]
          Length = 370

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 65/336 (19%), Positives = 129/336 (38%), Gaps = 7/336 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  II+  L+ ++ F      A  +   +WP+                +  T+ +  L
Sbjct: 18  LFLALIIISCLWVVQPFILSFAWAGTVVIATWPVLLRLQRLLFGKRMLAVLAMTLLLFLL 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           F++P+  L    +     L+  +   N   +P   WL+ +P  G      W   L    S
Sbjct: 78  FVIPIALLVNSLVDNSVPLIKLISSGNVT-LPDFAWLNSVPLVGDKLYSAWHGLLDMGGS 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G + +   L ++F  +     Y  G  ++       
Sbjct: 137 AIMAKVRPYIGTTTSWFVGQAAHIGKLLVYCGLMLLFSAL----LYWRGEQVAYGFRYFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + +R+  LG+ + A+ + ++ G    ++GVP    L V+     
Sbjct: 193 TRLAAKRGDAAVLLAGQAVRAVALGVVVTALTQAVLGGIGLAISGVPYAALLTVVMIFTC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G  +      I+L   G+    T L +W    +  +D  +RP L+     LP +  
Sbjct: 253 LVQLGPLLVLVPSIIWLYWSGDTTWGTVLLVWSC-VVGTMDNVIRPVLIRMGADLPMILI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             G++GG+   G++GLFIGPVL+A+   ++   +  
Sbjct: 312 LTGVIGGLIAFGMIGLFIGPVLLAVSWRLYDAWVHE 347


>gi|90580617|ref|ZP_01236422.1| putative permease [Vibrio angustum S14]
 gi|90438275|gb|EAS63461.1| putative permease [Photobacterium angustum S14]
          Length = 361

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 77/356 (21%), Positives = 152/356 (42%), Gaps = 14/356 (3%)

Query: 13  RWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
            W+++  + V+ +     ++ +  P++ A II     P++   ++     +   A+++  
Sbjct: 11  HWLLIIALFVAAFASYKLIEPYLGPIVLAFIISLLFAPLHKRLLALMPTRANTAAMLSCF 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKEL----VSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            +  + ++PLL +F   + +   +       +       +    +   +    +  +   
Sbjct: 71  VLTVIIVIPLLVVFSSIVHQGTTVSKESYQWITSGGPKELFAHPYAQKVLF--YIDKYSP 128

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
            H   PQ +     T     G   I   A   G       ++ + M+  LFF  RD   +
Sbjct: 129 FHDFDPQVIIQKIATTASQVGSQAINISARILGDAT-SILVNFMMMLFVLFFLLRDNDKM 187

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              +  +   L  +    I   V +V +S  LG  + A+ +GL  G A WL G P  +  
Sbjct: 188 IAAIRHVIP-LSRSQEDAIMEEVEQVAKSAVLGSFLTAVAQGLAGGFAMWLCGFPG-LFW 245

Query: 245 GVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           G + A  ++IP  G  + +   S+YLL+ G    A  L  WG + +  +D  +RP L+ G
Sbjct: 246 GSMMAFASLIPVVGTALIWLPASLYLLLVGQWEWALFLAGWGVLVVGSIDNVVRPLLMQG 305

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              +  L  FF ++GG++  GL+G+  GP++  +  V++K   +  K+  E+  SN
Sbjct: 306 SSSMNTLLIFFSIIGGIQLFGLIGMIYGPIIFGVTLVLFKMYEVEFKDFLEQQDSN 361


>gi|304309717|ref|YP_003809315.1| Predicted permease PerM family [gamma proteobacterium HdN1]
 gi|301795450|emb|CBL43648.1| Predicted permease PerM family [gamma proteobacterium HdN1]
          Length = 414

 Score =  199 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 77/341 (22%), Positives = 144/341 (42%), Gaps = 8/341 (2%)

Query: 13  RWMIMFIILVSL---YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           R  ++ +++VS    + LK FF  +  A+ I     P+      +    ++  A++  + 
Sbjct: 10  RTFLLLLLIVSFSFMWLLKPFFGAIFWAVAIALIFSPVQRRLNQRWPSRNSGNAMLTLLL 69

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + + ++P+LF+    + E   L  ++             L +        EL+ +    
Sbjct: 70  CVVVLVLPMLFVVGSLVSEGAGLYQRINAGQFDPAHYLARLRE--AFPMVEELFRRANID 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            QSL+      L   G   +       G       L+ +  +   FFF RDG  ++ QL 
Sbjct: 128 MQSLQEKLAE-LGMAGSKLLAGQVVALGQNTFSVVLNAVLALYVGFFFLRDGEQLTVQLI 186

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                L  A  + +      V+R+T  G  ++A+ +G + G A+   G+   +  G +  
Sbjct: 187 RALP-LGDARERLLLDRFAGVMRATIKGTLVVALVQGALGGLAFAALGISGALLWGGVMV 245

Query: 250 IMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I ++IP  GA + +  V++Y L  G+  +   L + G   + +VD  LRP LVG   ++P
Sbjct: 246 IASLIPAVGAALIWAPVAVYSLATGDWVSGVVLIVVGVGVIGMVDNLLRPILVGRDTQMP 305

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
                   +GG+   G+ GL IGP++ AL    W+  +   
Sbjct: 306 DYLVLLSTLGGLALFGMNGLIIGPIIAALFIAFWEIFMREF 346


>gi|206576471|ref|YP_002237996.1| inner membrane protein YdiK [Klebsiella pneumoniae 342]
 gi|288934905|ref|YP_003438964.1| hypothetical protein Kvar_2032 [Klebsiella variicola At-22]
 gi|206565529|gb|ACI07305.1| inner membrane protein YdiK [Klebsiella pneumoniae 342]
 gi|288889614|gb|ADC57932.1| protein of unknown function UPF0118 [Klebsiella variicola At-22]
          Length = 370

 Score =  199 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 65/336 (19%), Positives = 129/336 (38%), Gaps = 7/336 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  II+  L+ ++ F      A  +   +WP+                +  T+ +  L
Sbjct: 18  LFLALIIISCLWVVQPFILSFAWAGTVVIATWPVLLRLQRVLFGKRMLAVLAMTLLLFLL 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           F++P+  L    +     L+  +   N   +P   WL+ +P  G      W   L    S
Sbjct: 78  FVIPIALLVNSLVDNSVPLIKLISSGNVT-LPDFAWLNSVPLVGDKLYSAWHGLLDMGGS 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G + +   L ++F  +     Y  G  ++       
Sbjct: 137 AIMAKVRPYIGTTTSWFVGQAAHIGKLLVYCGLMLLFSAL----LYWRGEQVAYGFRYFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + +R+  LG+ + A+ + ++ G    ++GVP    L V+     
Sbjct: 193 TRLAAKRGDAAVLLAGQAVRAVALGVVVTALTQAVLGGIGLAISGVPYAALLTVVMIFTC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G  +      I+L   G+    T L +W    +  +D  +RP L+     LP +  
Sbjct: 253 LVQLGPLLVLVPSIIWLYWSGDTTWGTVLLVWSC-VVGTMDNVIRPVLIRMGADLPMILI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             G++GG+   G++GLFIGPVL+A+   ++   +  
Sbjct: 312 LTGVIGGLIAFGMIGLFIGPVLLAVSWRLYDAWVHE 347


>gi|261343992|ref|ZP_05971637.1| putative membrane protein [Providencia rustigianii DSM 4541]
 gi|282568383|gb|EFB73918.1| putative membrane protein [Providencia rustigianii DSM 4541]
          Length = 371

 Score =  199 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 71/359 (19%), Positives = 141/359 (39%), Gaps = 7/359 (1%)

Query: 2   RETMLNPQGIMRWM-IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           ++ M  P+ ++  + I+F+I    + L  F    + A ++   +WPI      +      
Sbjct: 5   QKRMDLPKLVLGLLSIIFMIATCFWVLSPFILGFVWAGMMVIATWPIMLKLQVRLWNKRW 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWA 119
             +V+  + +  LF++P   L    +     L+          +P   WL+ IP  G   
Sbjct: 65  LSSVVMVLLIFLLFVIPSSILIGSIIQNSAPLIELAKSPANITLPDLEWLNQIPMVGEKL 124

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              W   ++   +  +            +    A           L ++F  +     Y 
Sbjct: 125 YYAWHSLVASGGNALLAKVQPYIGQAAGWFATQAISASRFLFHLMLMLLFSGL----LYY 180

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G  ++  +      L          +  + IR+  LG+ + A+ + +V G    L+G+ 
Sbjct: 181 KGELVTLGIRHFAVRLAGIRGDAAVVLAAQSIRAVALGVVVTALVQAIVGGIGLALSGIS 240

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               L V+  I  +   G  +      ++L   G+   A  L +W AI +  +D  LRP+
Sbjct: 241 YAAILTVLIFICCVAQIGPLLVMIPSVLWLFWTGDTTWAIILGVWAAI-VATMDGVLRPW 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L+     LP +    G++GG+ + G++GLFIGPV++A+   + K  +  +    E +  
Sbjct: 300 LIKMGADLPMVLILIGVIGGILSFGMIGLFIGPVVLAVSYSLLKAWMNEVAPPSESLDE 358


>gi|238919816|ref|YP_002933331.1| hypothetical protein NT01EI_1920 [Edwardsiella ictaluri 93-146]
 gi|238869385|gb|ACR69096.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 365

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 69/337 (20%), Positives = 134/337 (39%), Gaps = 6/337 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             I  +I+  L+ ++ F      A ++   +WP+     +          V+ T+ ++ L
Sbjct: 18  LFIALLIISCLWVVQPFILGFTWASMVVIATWPVLMWLQNHLWGKRWMAVVLMTLLLLLL 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           F++P+  +    +     ++     A    +P   WL  +P          + L     L
Sbjct: 78  FVLPIGMVITSLIGNAGPILDWAANARNWQMPQLEWLQTLPLIGARLYASWQGLMSEGVL 137

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
               + ++      FI   A+  G  FL   L ++F  +     Y  G  ++  +     
Sbjct: 138 VTKIQPYIGQGITWFI-TQAAHVGGFFLHCSLMLLFSAL----LYSRGEDVAFGIRRFAI 192

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            L          +  + IR+  LG+ + A+ + ++ G    ++G+   V L V+  I  +
Sbjct: 193 RLAADRGDAAVILGGQAIRAVALGVVVTALAQSVLAGIGLAISGIHYAVLLTVVMFICCL 252

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
              G  +       +L   G+   AT L +W    +  +D  LRP L+     LP L   
Sbjct: 253 AQLGPLLVLIPAVAWLYWSGDNTWATVLLVWSG-VVGTMDNVLRPALIRLGADLPMLLVL 311

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            G++GG+   G++GLFIGPV++A+   +    I  + 
Sbjct: 312 SGVIGGLLAFGMIGLFIGPVVLAVSYRLVSVWISEVP 348


>gi|157145970|ref|YP_001453289.1| putative inner membrane protein [Citrobacter koseri ATCC BAA-895]
 gi|157083175|gb|ABV12853.1| hypothetical protein CKO_01723 [Citrobacter koseri ATCC BAA-895]
          Length = 370

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 68/345 (19%), Positives = 133/345 (38%), Gaps = 7/345 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  I   +WP+            +   ++ T+ ++ L
Sbjct: 18  LFLAIMIVACLWIVRPFVLGFAWAGTIVIATWPVLLRLQKILWGRRSLAVLVMTLLLVLL 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           FI+P+  L    +     L+   V A    +P   WL+ IP  G      W   L    +
Sbjct: 78  FIIPIALLVNSIVDGSGPLI-HAVTAGDMTLPDLAWLNSIPLIGAKLYAGWHNLLDMGGT 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  ++  +    
Sbjct: 137 AIMAKVRPYIGTTTTWFVGQAAHIGRFMMHCGLMLLFSAL----LYWRGEQVALGIRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  
Sbjct: 193 SRLAAKRGDAAVLLAAQAIRAVALGVVVTALVQAILGGIGLAISGVPYATLLTVVMILSC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G+    T L +W    +  +D  +RP L+     LP +  
Sbjct: 253 LVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSC-VVGTLDNVIRPVLIRMGADLPLILI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
             G++GG+   G++GLFIGPVL+A+   ++   +  +        
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVLLAVSWRLFSAWVHEVPAPGNDPD 356


>gi|168822229|ref|ZP_02834229.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|197247934|ref|YP_002146674.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197211637|gb|ACH49034.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|205341339|gb|EDZ28103.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320086155|emb|CBY95929.1| UPF0118 membrane protein BU123 [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 372

 Score =  199 bits (506), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 135/346 (39%), Gaps = 7/346 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  I   +WP+            +   ++ T+ ++ L
Sbjct: 18  LFLAIMIVACLWIVQPFILGFAWAGTIVIATWPVLLKLQKILWGRRSLAVLVMTLLLVLL 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           F++P+  L    +     L+   V      +P   WL++IP  G      W   L    S
Sbjct: 78  FVIPVALLVNSIVDGSGPLI-HAVTGGDMTLPDLAWLNNIPLVGAKLYAGWHSLLDMGGS 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  ++  +    
Sbjct: 137 AIMAKVRPYIGTTTTWFVGQAAHIGRFMMHCALMLLFSAL----LYWRGEQVAMGIRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  
Sbjct: 193 CRLAAKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAISGVPYATLLTVVMILSC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G+    T L +W A  +  +D  +RP L+     LP L  
Sbjct: 253 LVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSA-VVGTLDNVIRPVLIRMGADLPLLLI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G++GG+   G++GLFIGPVL+A+   ++   +  +     +   
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEVPAPTNEPEE 357


>gi|205352916|ref|YP_002226717.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205272697|emb|CAR37611.1| lipoprotein [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|326627989|gb|EGE34332.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 372

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 70/346 (20%), Positives = 136/346 (39%), Gaps = 7/346 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  I   +WP+            +   ++ T+ ++ L
Sbjct: 18  LFLAIMIVACLWIVQPFILGFAWAGTIVIATWPVLLKLQKILWGRRSLAVLVMTLLLVLL 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           F++P+  L    +     L+   V      +P   WL++IP  G      W   L    S
Sbjct: 78  FVIPVALLVNSIVDGSGPLI-HAVTGGDMTLPDLAWLNNIPLVGAKLYAGWHSLLDMGGS 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  ++  +    
Sbjct: 137 AIMAKVRPYIGTTTTWFVGQAAHIGRFMMHCALMLLFSAL----LYWRGEQVAMGIRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  
Sbjct: 193 CRLAAKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGVGLAISGVPYATLLTVVMILSC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G+    T L +W A  +  +D  +RP L+     LP LP 
Sbjct: 253 LVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSA-VVGTLDNVIRPVLIRMGADLPLLPI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G++GG+   G++GLFIGPVL+A+   ++   +  +     +   
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEVPAPTNEPEE 357


>gi|189218730|ref|YP_001939371.1| Predicted permease, member of the PurR regulon [Methylacidiphilum
           infernorum V4]
 gi|189185588|gb|ACD82773.1| Predicted permease, member of the PurR regulon [Methylacidiphilum
           infernorum V4]
          Length = 350

 Score =  198 bits (505), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 101/346 (29%), Positives = 174/346 (50%), Gaps = 7/346 (2%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF-- 61
                +       +  +L++++ L+GF   +  A +I   +WP YS    K   ++    
Sbjct: 6   PTPYQKTARVIASILFVLLAIWILRGFIVAMAWAFLIAIATWPFYSWVRMKLPRNTPLWV 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWAS 120
            ++  T+ V  L   PL++  +    E   L   +  A + G P P W   IP  G W +
Sbjct: 66  SSLFFTLLVGALLFGPLVYGVFKAGQEAIILGQYIAHAQKEGAPAPDWFQRIPFIGNWLT 125

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W  +L+ P++    +   L      F+ R+    G+  +     + F ++ LFF YRD
Sbjct: 126 VRWNLNLATPEA----ASKTLAHIDSAFLFRWGKTIGVQVIHRIEVLAFTLLTLFFLYRD 181

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  + ++  +    +     +K ++ +  VIR T  G+ ++++GEG++LG AY + G+P 
Sbjct: 182 GRVLGKKFLAFIRKILGTPGEKYAQHLVLVIRGTVNGLVLVSLGEGILLGIAYAIVGLPD 241

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            V LG +T I+AMIP  AP  F   +++LL +G I  A  + ++G   LF+ D  +RP L
Sbjct: 242 PVTLGGVTGILAMIPFAAPPVFCTAALFLLAQGMIIQAIAIVIFGFSVLFVADHFIRPAL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           +GG + LPF     G +GG+ + GLLGLF GP ++A + V WK+ +
Sbjct: 302 IGGAVNLPFYWVLLGTLGGLSSFGLLGLFAGPTIIAALLVAWKDFV 347


>gi|152970708|ref|YP_001335817.1| putative inner membrane protein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238895213|ref|YP_002919948.1| putative inner membrane protein [Klebsiella pneumoniae NTUH-K2044]
 gi|329999400|ref|ZP_08303408.1| hypothetical protein HMPREF9538_01066 [Klebsiella sp. MS 92-3]
 gi|150955557|gb|ABR77587.1| putative transport protein [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238547530|dbj|BAH63881.1| putative transport protein [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|328538324|gb|EGF64461.1| hypothetical protein HMPREF9538_01066 [Klebsiella sp. MS 92-3]
          Length = 370

 Score =  198 bits (505), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 65/336 (19%), Positives = 129/336 (38%), Gaps = 7/336 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  II+  L+ ++ F      A  +   +WP+                +  T+ +  L
Sbjct: 18  LFLALIIISCLWVVQPFILSFAWAGTVVIATWPVLLRLQRVLFGKRLLAVLAMTLLLFLL 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           F++P+  L    +     L+  +   N   +P   WL+ +P  G      W   L    S
Sbjct: 78  FVIPIALLVNSLVDNSVPLIKLISSGNVT-LPDFAWLNSVPLVGDKLYSAWHGLLDMGGS 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G + +   L ++F  +     Y  G  ++       
Sbjct: 137 AIMAKVRPYIGTTTSWFVGQAAHIGKLLVYCGLMLLFSAL----LYWRGEQVAYGFRYFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + +R+  LG+ + A+ + ++ G    ++GVP    L V+     
Sbjct: 193 TRLAAKRGDAAVLLAGQAVRAVALGVVVTALTQAVLGGIGLAVSGVPYAALLTVVMIFTC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G  +      I+L   G+    T L +W    +  +D  +RP L+     LP +  
Sbjct: 253 LVQLGPLLVLVPSIIWLYWSGDTTWGTVLLVWSC-VVGTMDNVIRPVLIRMGADLPMILI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             G++GG+   G++GLFIGPVL+A+   ++   +  
Sbjct: 312 LTGVIGGLIAFGMIGLFIGPVLLAVSWRLYDAWVHE 347


>gi|62179954|ref|YP_216371.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62127587|gb|AAX65290.1| putative permease [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322714421|gb|EFZ05992.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 372

 Score =  198 bits (505), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 70/346 (20%), Positives = 135/346 (39%), Gaps = 7/346 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  II+  L+ ++ F      A  I   +WP+            +   ++ T+ ++ L
Sbjct: 18  LFLAIIIVACLWIVQPFILGFAWAGTIVIATWPVLLKLQKILWGRRSLAVLVMTLLLVLL 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           F++P+  L    +     L+   V      +P   WL++IP  G      W   L    S
Sbjct: 78  FVIPVALLVNSIVDGSGPLI-HAVTGGDMTLPDLAWLNNIPLVGAKLYAGWHSLLDMGGS 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  ++  +    
Sbjct: 137 AIMAKVRPYIGTTTTWFVGQAAHIGRFMMHCALMLLFSAL----LYWRGEQVAMGIRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  
Sbjct: 193 CRLAAKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGVGLAISGVPYATLLTVVMILSC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G+    T L +W A  +  +D  +RP L+     LP L  
Sbjct: 253 LVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSA-VVGTLDNVIRPVLIRMGADLPLLLI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G++GG+   G++GLFIGPVL+A+   ++   +  +     +   
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEVPAPTNEPEE 357


>gi|16764714|ref|NP_460329.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|167551672|ref|ZP_02345426.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167994384|ref|ZP_02575476.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168263810|ref|ZP_02685783.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168463230|ref|ZP_02697161.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|194443331|ref|YP_002040620.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194447864|ref|YP_002045370.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194734868|ref|YP_002114380.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197265600|ref|ZP_03165674.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|198241856|ref|YP_002215762.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200389294|ref|ZP_03215905.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|207857130|ref|YP_002243781.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224584124|ref|YP_002637922.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|16419883|gb|AAL20288.1| putative permease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|194401994|gb|ACF62216.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194406168|gb|ACF66387.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194710370|gb|ACF89591.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195634155|gb|EDX52507.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197243855|gb|EDY26475.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197936372|gb|ACH73705.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199601739|gb|EDZ00285.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205323653|gb|EDZ11492.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205327740|gb|EDZ14504.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205347570|gb|EDZ34201.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206708933|emb|CAR33263.1| lipoprotein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224468651|gb|ACN46481.1| hypothetical protein SPC_2365 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261246572|emb|CBG24382.1| lipoprotein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267993250|gb|ACY88135.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157899|emb|CBW17394.1| lipoprotein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312912349|dbj|BAJ36323.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321223992|gb|EFX49055.1| Putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322616748|gb|EFY13657.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619992|gb|EFY16865.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622303|gb|EFY19148.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627826|gb|EFY24616.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633075|gb|EFY29818.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636679|gb|EFY33382.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641296|gb|EFY37937.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647390|gb|EFY43882.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650226|gb|EFY46640.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655800|gb|EFY52102.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660126|gb|EFY56365.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665308|gb|EFY61496.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669565|gb|EFY65713.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673491|gb|EFY69593.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677419|gb|EFY73483.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322679918|gb|EFY75957.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687390|gb|EFY83362.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323129634|gb|ADX17064.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323192507|gb|EFZ77737.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198638|gb|EFZ83739.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203119|gb|EFZ88150.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208684|gb|EFZ93622.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323213802|gb|EFZ98580.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217661|gb|EGA02376.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323219072|gb|EGA03577.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323227199|gb|EGA11372.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229463|gb|EGA13586.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323232686|gb|EGA16782.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240276|gb|EGA24320.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242736|gb|EGA26757.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323245947|gb|EGA29935.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252809|gb|EGA36646.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256701|gb|EGA40430.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323267143|gb|EGA50628.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271533|gb|EGA54954.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326623509|gb|EGE29854.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 372

 Score =  198 bits (505), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 135/346 (39%), Gaps = 7/346 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  I   +WP+            +   ++ T+ ++ L
Sbjct: 18  LFLAIMIVACLWIVQPFILGFAWAGTIVIATWPVLLKLQKILWGRRSLAVLVMTLLLVLL 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           F++P+  L    +     L+   V      +P   WL++IP  G      W   L    S
Sbjct: 78  FVIPVALLVNSIVDGSGPLI-HAVTGGDMTLPDLAWLNNIPLVGAKLYAGWHSLLDMGGS 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  ++  +    
Sbjct: 137 AIMAKVRPYIGTTTTWFVGQAAHIGRFMMHCALMLLFSAL----LYWRGEQVAMGIRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  
Sbjct: 193 CRLAAKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGVGLAISGVPYATLLTVVMILSC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G+    T L +W A  +  +D  +RP L+     LP L  
Sbjct: 253 LVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSA-VVGTLDNVIRPVLIRMGADLPLLLI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G++GG+   G++GLFIGPVL+A+   ++   +  +     +   
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEVPAPTNEPEE 357


>gi|94495544|ref|ZP_01302124.1| hypothetical protein SKA58_05830 [Sphingomonas sp. SKA58]
 gi|94424932|gb|EAT09953.1| hypothetical protein SKA58_05830 [Sphingomonas sp. SKA58]
          Length = 370

 Score =  198 bits (505), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 70/354 (19%), Positives = 147/354 (41%), Gaps = 5/354 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M  ++    G     ++ + +     ++ FFA +L  +I+     P++    ++    + 
Sbjct: 11  MHLSIKLEDGFFLGFVLLVSVAFALVIEPFFAAILWGVIVAIVFAPVHHRIRAQMPGRTN 70

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV-PRWLSDIPGGMWA 119
             A++  + ++ + IVP   L    + E      KV     + + +    ++ +P  +  
Sbjct: 71  AAALLTLLLILLVVIVPAFVLGAALLQEATYFYGKVQSGEINFVRLFYDVIAALPDWLRP 130

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                   +   + ++++     T+    +   A + G     + +++  M+   FF  R
Sbjct: 131 YVQRLGITNFYAAQEMVTRGL--TSSFRTLAGQAFQIGQSAFSFFVALGVMLYLAFFLLR 188

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  +++++ +            +      V R+T  G  ++AI +GL+ G  +W   + 
Sbjct: 189 DGDWLARKVAAAAPLRAGQRTA-LIEQFVIVTRATIKGSIVVAIVQGLIGGLVFWALDIQ 247

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             +  GV+    +++P  G  I +  V+IYL   G ++    L + GA+ +  VD  LRP
Sbjct: 248 GALLWGVLMGAFSLLPAIGTAIVWVPVAIYLFATGAVWQGVVLVVCGALVIGSVDNVLRP 307

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            LVG   ++P        +GG+   G  G+ IGPV+ AL    W        E+
Sbjct: 308 ILVGRDTRIPDYVVLISTLGGLELFGFNGIVIGPVIAALFIATWNIFTRMRGED 361


>gi|323525474|ref|YP_004227627.1| hypothetical protein BC1001_1122 [Burkholderia sp. CCGE1001]
 gi|323382476|gb|ADX54567.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1001]
          Length = 372

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 77/351 (21%), Positives = 153/351 (43%), Gaps = 5/351 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           ++   L  +    + ++ ++  SL  L  F   +L   I+ ++SW  Y    +       
Sbjct: 2   VKSDQLIERLAAVFALIILVGGSLLVLAPFTTALLWGAILSYSSWGFYRRLTAAVGGRRK 61

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWA 119
           + A +  + ++ + + P ++  +     + ++V+ V    + G+P +P W++ IP    +
Sbjct: 62  WAATLIVLIILIVVLGPFVYAGFAFGAHVHDIVALVQRLFEAGLPDLPPWVARIPVVGSS 121

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            E + + L+   S  I     L      +I   A           LSI+      FFFY 
Sbjct: 122 IESFWETLTSSNSELIAQLRTLAAPAGKWILSAAIAVTHGLGLLALSIVLA----FFFYT 177

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G      L++    +       +  +    ++    G+   A+ +G++ G   W+AGVP
Sbjct: 178 GGEGAGAWLNAGMRRIAGERADYLLALAGSTVKGVVYGILGTALVQGILAGFGCWIAGVP 237

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           +   LG+ T  +++IPGG  I +   +I+L   G    A  L +WG + + + D  ++P 
Sbjct: 238 APALLGLATFFLSVIPGGPVIVWLPAAIWLYHGGATGWAIFLVVWGVLVVGMSDNVIKPI 297

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+G    +P +    G++GG    G LG+FIGP L+A+   +  +  +   
Sbjct: 298 LIGKNSDMPLILVMLGILGGAFAFGFLGVFIGPTLLAVAYTVLHDWTIGAP 348


>gi|168233553|ref|ZP_02658611.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194472682|ref|ZP_03078666.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|238910820|ref|ZP_04654657.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|194459046|gb|EDX47885.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205332357|gb|EDZ19121.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 372

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 70/346 (20%), Positives = 136/346 (39%), Gaps = 7/346 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  I   +WP+            +   ++ T+ ++ L
Sbjct: 18  LFLAIMIVACLWIVQPFILGFAWAGTIVIATWPVLLKLQKILWGRRSLAVLVMTLLLVLL 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           F++P+  L    +     L+   V      +P   WL++IP  G      W   L    S
Sbjct: 78  FVIPVALLVNSIVDGSGPLI-HAVTGGDMTLPDLAWLNNIPLVGAKLYAGWHSLLDMGGS 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  ++  +    
Sbjct: 137 AIMAKVRPYIGTTTTWFVGQAAHIGRFMMHCALMLLFSAL----LYWRGEQVAMGIRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  
Sbjct: 193 CRLAAKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGVGLAISGVPYATLLTVVMILSC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G+    T L +W AI +  +D  +RP L+     LP L  
Sbjct: 253 LVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSAI-VGTLDNVIRPVLIRMGADLPLLLI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G++GG+   G++GLFIGPVL+A+   ++   +  +     +   
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEVPAPTNEPEE 357


>gi|204927467|ref|ZP_03218668.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204322809|gb|EDZ08005.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 372

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 135/346 (39%), Gaps = 7/346 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  I   +WP+            +   ++ T+ ++ L
Sbjct: 18  LFLAIMIVACLWIVQPFILGFAWAGTIVIATWPVLLKLQKILWGRRSLAVLVMTLLLVLL 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           F++P+  L    +     L+   V      +P   WL++IP  G      W   L    S
Sbjct: 78  FVIPVALLVNSIVDGSGPLI-HAVTGGDMTLPDLAWLNNIPLVGAKLYAGWHSLLDMGGS 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  ++  +    
Sbjct: 137 AIMAKVRPYIGTTTTWFVGQAAHIGRFMMHCALMLLFSAL----LYWRGEQVAMGIRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  
Sbjct: 193 CRLAAKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGVGLAISGVPYATLLTVVMILSC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G+    T L +W A  +  +D  +RP L+     LP L  
Sbjct: 253 LVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSA-VVGTLDNVIRPVLIRMGADLPLLLI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G++GG+   G++GLFIGPVL+A+   ++   +  +     +   
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVYEVPAPTNEPEE 357


>gi|291616655|ref|YP_003519397.1| YdiK [Pantoea ananatis LMG 20103]
 gi|291151685|gb|ADD76269.1| YdiK [Pantoea ananatis LMG 20103]
 gi|327393082|dbj|BAK10504.1| permease YdiK [Pantoea ananatis AJ13355]
          Length = 397

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 65/336 (19%), Positives = 133/336 (39%), Gaps = 5/336 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G    ++    +     L  +F+ +L A ++     P+      K  + +   +++  V 
Sbjct: 9   GFFLLILAMATIAFFEVLAPYFSAILWAAVLAVIFHPLKRYLRGKLGDRNGLASLLTLVC 68

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +  +   PL  +    ++E+  +  K+   + Q  +     L  +PG  WA     ++  
Sbjct: 69  ICLIVFTPLAIIASSMVVEVNTVYHKLQTNSAQFPVVFADLLQHLPG--WAKHYLAENNL 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +      +     G  ++   A   G     + +    M+  LFF  +DG  +   +
Sbjct: 127 DNATQIQQKLSAFALKGGQYLAGSAFIIGKGTFSFTVGFGIMLYLLFFLLKDGSYLVHLI 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 L       +      V R+T  G  ++ + +G++ G A+W  G+   +  G + 
Sbjct: 187 LEALP-LSTYVKHHLFMKFAAVSRATVKGTVVVGVVQGILGGLAFWFTGIDGSLLWGALM 245

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             ++++P  G+ I +   +I+    G ++    L  +  + + +VD  LRP LVG   K+
Sbjct: 246 GFLSLVPAVGSAIIWVPATIFFFATGALWKGLFLVGFFVVVVGLVDNILRPLLVGKDTKM 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           P        +GG+   G+ G  IGPV+ AL    W 
Sbjct: 306 PDYLILITTLGGMEIYGINGFVIGPVIAALFIACWN 341


>gi|269139133|ref|YP_003295834.1| predicted permease [Edwardsiella tarda EIB202]
 gi|267984794|gb|ACY84623.1| predicted permease [Edwardsiella tarda EIB202]
 gi|304559059|gb|ADM41723.1| Putative membrane protein [Edwardsiella tarda FL6-60]
          Length = 365

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 69/337 (20%), Positives = 134/337 (39%), Gaps = 6/337 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             I  +I+  L+ ++ F      A ++   +WP+     +          V+ T+ ++ L
Sbjct: 18  LFIALLIISCLWVVQPFILGFTWASMVVIATWPVLIWLQNHLWGKRWIAVVLMTLLLLLL 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           F++P+  +    +     ++     A    +P   WL  +P          + L +   L
Sbjct: 78  FVLPIGMVITSLIGNAGPILDWAANARSWQMPQMEWLQTLPLIGAKLYASWQGLMNEGVL 137

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
               + ++      FI   A+  G  FL   L ++F  +     Y  G  ++  +     
Sbjct: 138 VTKIQPYIGQGITWFI-TQAAHVGGFFLHCSLMLLFSAL----LYSRGEDVAFGIRRFAI 192

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            L          +  + IR+  LG+ + A+ + ++ G    ++G+   V L V+  I  +
Sbjct: 193 RLAADRGDAAVILGGQAIRAVALGVVVTALAQSVLAGIGLAISGIHYAVLLTVVMFICCL 252

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
              G  +       +L   G+   AT L +W    +  +D  LRP L+     LP L   
Sbjct: 253 AQLGPLLVLIPAVAWLYWSGDNTWATVLLVWSG-VVGTMDNVLRPALIRLGADLPMLLVL 311

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            G++GG+   G++GLFIGPV++A+   +    I    
Sbjct: 312 SGVIGGLLAFGMIGLFIGPVVLAVSYRLVSVWISEAP 348


>gi|153217441|ref|ZP_01951183.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|124113554|gb|EAY32374.1| conserved hypothetical protein [Vibrio cholerae 1587]
          Length = 361

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 78/358 (21%), Positives = 151/358 (42%), Gaps = 10/358 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + +   ++   ++   L   + ++ +   ++ A II    +PI+  F  K    +   A 
Sbjct: 7   LASSHRVLVVALLASALACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAAF 66

Query: 65  IATVSVMCLFIVPLLFLFYYGMLE----MKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           ++ V +  + ++PLLF+F   + +     + L + V       +    W+  + G   A+
Sbjct: 67  LSCVVLTVIIVIPLLFIFGAIVQQGSKFSQNLYAWVTQGGIQTLFNHPWV--VKGLSLAN 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                    PQ +      F  T G + +   A   G     + +    M+  LFF  RD
Sbjct: 125 HYLPFEEISPQQIAQRIGQFATTFGSNLVSISAKILGDAT-SFVMHFFLMLFVLFFLLRD 183

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   +  +   L  +   ++   +  V +S  +G  + AI +G+  G   WLAG P 
Sbjct: 184 HDKIISAIRHILP-LSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAGGIGMWLAGFPG 242

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  G +    + IP  G  + +   ++YL + G+   A  L +W    +  +D  LRPF
Sbjct: 243 -LFWGTMMGFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAVVGSIDNLLRPF 301

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           L+ G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       +   ++  
Sbjct: 302 LMQGSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRNFLDQQD 359


>gi|117620860|ref|YP_858434.1| hypothetical protein AHA_4000 [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562267|gb|ABK39215.1| putative membrane protein [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 359

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 70/353 (19%), Positives = 141/353 (39%), Gaps = 6/353 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M++  L    +    +  +I+     L+ F   ++ A +I   +WP+             
Sbjct: 1   MKKVDLAKITLGVLFLSLLIVSCFMVLRPFLPALVWATMITIATWPLMLMVQRLLWGKRA 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWA 119
             A+  T+ ++ +F++PL         +   L+      +    P   WL  +P  G   
Sbjct: 61  LAALSMTLVLLLMFVIPLFMALANVAEKAPMLIELGTTISHSPPPELLWLQQVPLVGGKL 120

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            + W + L+    +              ++   A   G++F+ + L++    +     Y 
Sbjct: 121 YDFWQQILASGGQVLFAKLAPYFGQTARWLASQAGNLGLLFVHFLLTVGICGL----LYH 176

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G  ++  +      L        + +  + IR+  +G+ + A+ +  V G    +AG+P
Sbjct: 177 SGEVVATGIRRFAHRLAGERGDNATVLASQAIRAVAMGVVVTALVQSSVAGLGLLIAGIP 236

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             + L V+  ++ +   G      A   YL   G+    T L +W  +    +D  LRPF
Sbjct: 237 YTMILVVVMFLLIVAQIGPFPVLLACVGYLYWSGDTTWGTFLLVWSLLA-GTMDNFLRPF 295

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+     LP +    G++GG+  MG++GLFIGPV++A+   +    I    + 
Sbjct: 296 LIKRGADLPLILILVGVIGGLLAMGIIGLFIGPVVLAVGYTLLDAWIKEDDQP 348


>gi|85059408|ref|YP_455110.1| putative inner membrane protein [Sodalis glossinidius str.
           'morsitans']
 gi|84779928|dbj|BAE74705.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 366

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/340 (19%), Positives = 130/340 (38%), Gaps = 6/340 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             I  + L   + ++ F      A ++   +WP+            +   V+ T+ ++ L
Sbjct: 18  TFIALMTLSCFWVVQPFILGFSWASMVVIATWPLLIKVQHLLWGRRSLAVVVMTLLLLLL 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           F++P+  L    +     LV+     ++  +P   WL DIP  G      W   +S   +
Sbjct: 78  FVLPVSILVSSIVDNSAPLVAWATQPDRLTLPALAWLQDIPMVGRKLYSAWQSLISGGSA 137

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            ++    +  G + L   L I+F ++     Y  G  +   +    
Sbjct: 138 PLMSKIQPYIGKAASWLLGQVANLGSLLLHCGLMILFSVL----LYLRGERVGMAVRHFA 193

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  +G+ + AI + ++ G    + G+P    L V   ++ 
Sbjct: 194 IRLGAERGDASVLLAAQAIRAVAMGVVLTAIVQSVLGGVGLAITGIPLATVLTVTMFVLC 253

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +   G         I+L   G+    T L +W    +  +D  LRP  +     LP L  
Sbjct: 254 IAQLGPLPVLIPAMIWLYWSGDTTWGTILLVWSC-VVATLDNILRPIFIHMGADLPMLLV 312

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             G++GG+   G++GLFIGPV++A+   +    +      
Sbjct: 313 LCGVLGGLLAFGMIGLFIGPVVLAVSWRLVFAWMQEAPPP 352


>gi|213581770|ref|ZP_03363596.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 370

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 135/346 (39%), Gaps = 7/346 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  I   +WP+            +   ++ T+ ++ L
Sbjct: 16  LFLAIMIVACLWIVQPFILGFAWAGTIVIATWPVLLKLQKILWGRRSLAVLVMTLLLVLL 75

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           F++P+  L    +     L+   V      +P   WL++IP  G      W   L    S
Sbjct: 76  FVIPVALLVNSIVDGSGPLI-HAVTGGDMTLPDLAWLNNIPLVGAKLYAGWHSLLDMGGS 134

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  ++  +    
Sbjct: 135 AIMAKVRPYIGTTTIWFVGQAAHIGRFMMHCALMLLFSAL----LYWRGEQVAMGIRHFA 190

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  
Sbjct: 191 CRLAAKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGVGLAISGVPYATLLTVVMILSC 250

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G+    T L +W A  +  +D  +RP L+     LP L  
Sbjct: 251 LVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSA-VVGTLDNVIRPVLIRMGADLPLLLI 309

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G++GG+   G++GLFIGPVL+A+   ++   +  +     +   
Sbjct: 310 LSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEVPAPTNEPEE 355


>gi|325983330|ref|YP_004295732.1| hypothetical protein NAL212_2783 [Nitrosomonas sp. AL212]
 gi|325532849|gb|ADZ27570.1| protein of unknown function UPF0118 [Nitrosomonas sp. AL212]
          Length = 362

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 80/342 (23%), Positives = 146/342 (42%), Gaps = 10/342 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q     +I  +++     L  F   ++ A+++  ++WPIY         ++T  +++  V
Sbjct: 9   QFARLVVIAILLIGCYQILHPFIPAIVFAMVVCISTWPIYLQLRRALGGNTTLASLLMIV 68

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPG-GMWASELWTKH 126
            ++ L I+P   L +     +  ++  V +  Q G I  P WL D P  G      W   
Sbjct: 69  GMILLVIIPSALLAFSLADNVTAIIDAVKVFMQQGSIEPPSWLKDTPFFGEQFIRYWQGL 128

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +S  + +       L T  ++ I  F    G +     L ++F     FFFYRDG ++ Q
Sbjct: 129 MSGGKEV-----GMLLTGLLEPIKNFLLNLGNVIGKSLLQMVFAAFIGFFFYRDGETLIQ 183

Query: 187 QLDSLGEHLF-PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS--HVA 243
            L +    L   +        +   +     G+   A+ + +     + +AGV       
Sbjct: 184 MLHNGVAKLLDGSLGTDPLVQIHNTVTGVVYGIFGSALAQAIAAMIGFLIAGVSGSGAFL 243

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           LG  T  +++IP G  + +  VS++ L +G+   A    LWG   +  +D  +RP+L+  
Sbjct: 244 LGSATFFLSVIPMGPSLVWGGVSVWFLYEGSYGWAIFTILWGIFVISSIDNFVRPYLISR 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
              L FL    G  GG+   G +G+FIGP ++A+   + +  
Sbjct: 304 GSNLSFLLVVLGASGGIIAYGFIGIFIGPPILAIGITLVRLW 345


>gi|260752852|ref|YP_003225745.1| hypothetical protein Za10_0613 [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|283856300|ref|YP_162388.2| hypothetical protein ZMO0653 [Zymomonas mobilis subsp. mobilis ZM4]
 gi|258552215|gb|ACV75161.1| protein of unknown function UPF0118 [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|283775296|gb|AAV89277.2| protein of unknown function UPF0118 [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 352

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 93/343 (27%), Positives = 159/343 (46%), Gaps = 4/343 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES--STFLAVIATVSVM 71
                II + L+ ++ F+  ++ +++I    WP++                  +AT+++ 
Sbjct: 12  IFFAGIIGLGLWTIRHFWPALIWSIVIAIAFWPLWLKLKESMGSKHEKMLAPALATLAIG 71

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              I+PLLF  +  M + +  +             P WL  IP   +   L  K      
Sbjct: 72  VTLILPLLFFAFEIMNDFQAAIHFFQDLKNQDTAPPDWLGRIPF--FGGNLVNKWHQFFA 129

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                S+  L       +   +  FGM       +  F +++LFF +R G  + +   ++
Sbjct: 130 PSSDGSQISLHQLLNGNVINHSRAFGMNVARRITTFFFTLMSLFFLFRSGSELQKMFLNV 189

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L     ++ +  V   +R T  G+ ++ +GEG++LG  Y   G P  V  G +TAI 
Sbjct: 190 SRRLMGPDMERFAHQVVLSVRGTLDGLVLVGLGEGVLLGIIYVFTGTPHAVMFGGMTAIA 249

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           A+IP  AP+ F  V+  L  +G+I  A  +   G + L I D  +RP L+GG  +LPFL 
Sbjct: 250 AIIPFCAPVMFCIVAAILASQGHIGAAITVVALGMLILMIADHVVRPILIGGATRLPFLW 309

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
              G++GG+ T GLLGLF+GP LMA++ +IW++       N++
Sbjct: 310 VLIGILGGIETFGLLGLFLGPALMAVLIMIWRDIADPPHLNED 352


>gi|16760543|ref|NP_456160.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29141696|ref|NP_805038.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213052909|ref|ZP_03345787.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213612364|ref|ZP_03370190.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213646713|ref|ZP_03376766.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|289825924|ref|ZP_06545083.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25307060|pir||AH0703 probable membrane protein STY1759 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16502839|emb|CAD02001.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137324|gb|AAO68887.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 372

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 135/346 (39%), Gaps = 7/346 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  I   +WP+            +   ++ T+ ++ L
Sbjct: 18  LFLAIMIVACLWIVQPFILGFAWAGTIVIATWPVLLKLQKILWGRRSLAVLVMTLLLVLL 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           F++P+  L    +     L+   V      +P   WL++IP  G      W   L    S
Sbjct: 78  FVIPVALLVNSIVDGSGPLI-HAVTGGDMTLPDLAWLNNIPLVGAKLYAGWHSLLDMGGS 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  ++  +    
Sbjct: 137 AIMAKVRPYIGTTTIWFVGQAAHIGRFMMHCALMLLFSAL----LYWRGEQVAMGIRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  
Sbjct: 193 CRLAAKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGVGLAISGVPYATLLTVVMILSC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G+    T L +W A  +  +D  +RP L+     LP L  
Sbjct: 253 LVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSA-VVGTLDNVIRPVLIRMGADLPLLLI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G++GG+   G++GLFIGPVL+A+   ++   +  +     +   
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEVPAPTNEPEE 357


>gi|262191799|ref|ZP_06049971.1| hypothetical protein VIH_002174 [Vibrio cholerae CT 5369-93]
 gi|262032333|gb|EEY50899.1| hypothetical protein VIH_002174 [Vibrio cholerae CT 5369-93]
          Length = 361

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 78/347 (22%), Positives = 147/347 (42%), Gaps = 10/347 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           ++   L   + ++ +   ++ A II    +PI+  F  K    +   A ++ V +  + +
Sbjct: 18  LLASALACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAAFLSCVVLTVIIV 77

Query: 76  VPLLFLFYYGMLE----MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
           +PLLF+F   + +     + L + V       +    W+  + G   A+         PQ
Sbjct: 78  IPLLFIFGAIVQQGSKFSQNLYAWVTQGGIQALFNHPWV--VKGLSLANHYLPFEEISPQ 135

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            +      F  T G + +   A   G     + +    M+  LFF  RD   I   +  +
Sbjct: 136 QIAQRIGQFATTFGSNLVSISAKILGDAT-SFVMHFFLMLFVLFFLLRDHDKIISAIRHI 194

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L  +   ++   +  V +S  +G  + AI +G+  G   WLAG P  +  G +    
Sbjct: 195 LP-LSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAGGIGMWLAGFPG-LFWGTMMGFA 252

Query: 252 AMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + IP  G  + +   ++YL + G+   A  L +W    +  +D  LRPFL+ G   +  L
Sbjct: 253 SFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAVVGSIDNLLRPFLMQGSAGMNTL 312

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
             FF L+GG++  GL+GL  GP++ A+  V++       +   ++  
Sbjct: 313 MIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQQD 359


>gi|89072498|ref|ZP_01159070.1| putative permease [Photobacterium sp. SKA34]
 gi|89051602|gb|EAR57055.1| putative permease [Photobacterium sp. SKA34]
          Length = 361

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 77/356 (21%), Positives = 151/356 (42%), Gaps = 14/356 (3%)

Query: 13  RWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
            W+++  + V+ +     ++ +  P++ A II     P++   ++     +   A+++  
Sbjct: 11  HWLLIIALFVAAFASYKLIEPYLGPIVLAFIISLLFAPLHKRLLALMPTRANTAAMLSCF 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKEL----VSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            +  + ++PLL +F   + +   +       +       +    +        +  +   
Sbjct: 71  VLTVIIVIPLLVVFSSIVHQGTTVSKESYQWITSGGPKELFAHPYAQK--ALFYIDKYSP 128

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
            H   PQ +     T     G   I   A   G       ++ + M+  LFF  RD   +
Sbjct: 129 FHDFDPQVIIQKIATTASQVGSQAINISARILGDAT-SILVNFMMMLFVLFFLLRDNDKM 187

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              +  +   L  +    I   V +V +S  LG  + A+ +GL  G A WL G P  +  
Sbjct: 188 IAAIRHVIP-LSRSQEDAIMEEVEQVAKSAVLGSFLTAVAQGLAGGFAMWLCGFPG-LFW 245

Query: 245 GVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           G + A  ++IP  G  + +   S+YLL+ G    A  L  WG I +  +D  +RP L+ G
Sbjct: 246 GSMMAFASLIPVVGTALIWLPASLYLLLVGQWEWALFLAGWGIIVVGSIDNVVRPLLMQG 305

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              +  L  FF ++GG++  GL+G+  GP++  +  V++K   +  K+  E+  S+
Sbjct: 306 SSSMNTLLIFFSIIGGIQLFGLIGMIYGPIIFGVTLVLFKMYEVEFKDFLEQQDSH 361


>gi|258623083|ref|ZP_05718096.1| putative lipoprotein [Vibrio mimicus VM573]
 gi|258584696|gb|EEW09432.1| putative lipoprotein [Vibrio mimicus VM573]
          Length = 361

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 80/351 (22%), Positives = 150/351 (42%), Gaps = 10/351 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + +   ++   ++   L   + ++ +   ++ A II    +PI+  F  K      F A 
Sbjct: 7   LASSHRVLVVALLASALACYWLVEPYINSIVMAFIISLLMFPIHEWFEKKLPSHDNFAAF 66

Query: 65  IATVSVMCLFIVPLLFLFYYGMLE----MKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           ++ V +  + ++PLLF+F   + +     + L + V       +    W+  + G   A+
Sbjct: 67  LSCVVLTVIIVIPLLFIFGAIVQQGSKFSQNLYAWVTHGGIQELFSHPWI--VKGLSLAN 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                    PQ +      F  T G + +   A   G     + ++   M+  LFF  RD
Sbjct: 125 HYLPFEEISPQQIAQRIGQFATTFGSNLVSISAKILGDAT-SFVMNFFLMLFVLFFLLRD 183

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   +  +   L  +   ++   +  V +S  +G  + AI +GL  G   WLAG P 
Sbjct: 184 HDKIISAIRHILP-LSRSQEDRLLNEIENVSKSAVMGSFLTAIAQGLAGGIGMWLAGFPG 242

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  G +    + IP  G  + +   ++YL + G+   A  L +W    +  +D  LRPF
Sbjct: 243 -LFWGTMMGFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSIAVVGSIDNLLRPF 301

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+ G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       +
Sbjct: 302 LMQGSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFR 352


>gi|330816979|ref|YP_004360684.1| hypothetical protein bgla_1g20910 [Burkholderia gladioli BSR3]
 gi|327369372|gb|AEA60728.1| hypothetical protein bgla_1g20910 [Burkholderia gladioli BSR3]
          Length = 347

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 83/324 (25%), Positives = 145/324 (44%), Gaps = 5/324 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            +  L+ F   +  ALII + SWP++    S      +  A++ T  V  + +VP+L L 
Sbjct: 22  GILVLRPFLVSMTWALIIAYVSWPVHQRMQSLTNHRRSISALLTTSLVTVVLVVPILLLA 81

Query: 83  YYGMLEMKELVSKVVLA-NQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
                E  E   ++    +     +PR  S +P       +W +  +            L
Sbjct: 82  LPLSRESVEFAHRMAAWFSDRHHTLPRLASSVPW----LGVWLQAAADDIGRDARESRAL 137

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                +     A++         L   F ++ LFF YRDG ++  QL  + E L    + 
Sbjct: 138 LAQWGNHAMGAAAQLAANAGRNALKFGFAVLTLFFVYRDGRTVLDQLRLVFEPLLGKRFD 197

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
                + +V  +   G  + A  +G   G  YW AGV + + L V+TA+ A+ P G P  
Sbjct: 198 VYLASIGEVCCAVAYGGVLTATAQGTAAGIGYWAAGVEAPLLLSVLTALAALFPFGTPFV 257

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +  V + LL+ G ++    L  WG + +  +D  +RP L+ G  ++PFL   F ++GG+ 
Sbjct: 258 WVPVGLALLLDGRLWAGVSLLAWGTLAISGIDNLVRPLLISGGTRMPFLLAVFSILGGIA 317

Query: 322 TMGLLGLFIGPVLMALIAVIWKES 345
             G +G F+GP+++A +  +W+E 
Sbjct: 318 AFGFVGFFLGPIVVATLLAVWREW 341


>gi|121587957|ref|ZP_01677711.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121728275|ref|ZP_01681307.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|147673733|ref|YP_001216117.1| putative lipoprotein [Vibrio cholerae O395]
 gi|153801764|ref|ZP_01956350.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|153818917|ref|ZP_01971584.1| lipoprotein, putative [Vibrio cholerae NCTC 8457]
 gi|153822992|ref|ZP_01975659.1| lipoprotein, putative [Vibrio cholerae B33]
 gi|153825679|ref|ZP_01978346.1| lipoprotein, putative [Vibrio cholerae MZO-2]
 gi|227080805|ref|YP_002809356.1| hypothetical protein VCM66_0582 [Vibrio cholerae M66-2]
 gi|229505753|ref|ZP_04395263.1| hypothetical protein VCF_000964 [Vibrio cholerae BX 330286]
 gi|229509213|ref|ZP_04398698.1| hypothetical protein VCE_000613 [Vibrio cholerae B33]
 gi|229519577|ref|ZP_04409020.1| hypothetical protein VCC_003609 [Vibrio cholerae RC9]
 gi|229520915|ref|ZP_04410337.1| hypothetical protein VIF_001439 [Vibrio cholerae TM 11079-80]
 gi|229608864|ref|YP_002879512.1| hypothetical protein VCD_003786 [Vibrio cholerae MJ-1236]
 gi|254291239|ref|ZP_04962034.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|254850857|ref|ZP_05240207.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255744158|ref|ZP_05418111.1| predicted permease [Vibrio cholera CIRS 101]
 gi|262155732|ref|ZP_06028856.1| predicted permease [Vibrio cholerae INDRE 91/1]
 gi|262169926|ref|ZP_06037616.1| predicted permease [Vibrio cholerae RC27]
 gi|298500741|ref|ZP_07010544.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|121547804|gb|EAX57892.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121629469|gb|EAX61896.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|124122729|gb|EAY41472.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|126510534|gb|EAZ73128.1| lipoprotein, putative [Vibrio cholerae NCTC 8457]
 gi|126519499|gb|EAZ76722.1| lipoprotein, putative [Vibrio cholerae B33]
 gi|146315616|gb|ABQ20155.1| putative lipoprotein [Vibrio cholerae O395]
 gi|149740616|gb|EDM54725.1| lipoprotein, putative [Vibrio cholerae MZO-2]
 gi|150422803|gb|EDN14755.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|227008693|gb|ACP04905.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|227012449|gb|ACP08659.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|229342148|gb|EEO07144.1| hypothetical protein VIF_001439 [Vibrio cholerae TM 11079-80]
 gi|229344266|gb|EEO09241.1| hypothetical protein VCC_003609 [Vibrio cholerae RC9]
 gi|229353785|gb|EEO18721.1| hypothetical protein VCE_000613 [Vibrio cholerae B33]
 gi|229357976|gb|EEO22893.1| hypothetical protein VCF_000964 [Vibrio cholerae BX 330286]
 gi|229371519|gb|ACQ61942.1| hypothetical protein VCD_003786 [Vibrio cholerae MJ-1236]
 gi|254846562|gb|EET24976.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255738098|gb|EET93490.1| predicted permease [Vibrio cholera CIRS 101]
 gi|262021660|gb|EEY40371.1| predicted permease [Vibrio cholerae RC27]
 gi|262030443|gb|EEY49083.1| predicted permease [Vibrio cholerae INDRE 91/1]
 gi|297540522|gb|EFH76580.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 361

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 78/358 (21%), Positives = 151/358 (42%), Gaps = 10/358 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + +   ++   ++   L   + ++ +   ++ A II    +PI+  F  K    +   A 
Sbjct: 7   LASSHRVLVVALLASALACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAAF 66

Query: 65  IATVSVMCLFIVPLLFLFYYGMLE----MKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           ++ V +  + ++PLLF+F   + +     + L + V       +    W+  + G   A+
Sbjct: 67  LSCVVLTVIIVIPLLFIFGAIVQQGSKFSQNLYAWVTQGGIQALFNHPWV--VKGLSLAN 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                    PQ +      F  T G + +   A   G     + +    M+  LFF  RD
Sbjct: 125 HYLPFEEISPQQIAQRIGQFATTFGSNLVSISAKILGDAT-SFVMHFFLMLFVLFFLLRD 183

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   +  +   L  +   ++   +  V +S  +G  + AI +G+  G   WLAG P 
Sbjct: 184 HDKIISAIRHILP-LSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAGGIGMWLAGFPG 242

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  G +    + IP  G  + +   ++YL + G+   A  L +W    +  +D  LRPF
Sbjct: 243 -LFWGTMMGFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAVVGSIDNLLRPF 301

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           L+ G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       +   ++  
Sbjct: 302 LMQGSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQQD 359


>gi|296116208|ref|ZP_06834826.1| hypothetical protein GXY_10439 [Gluconacetobacter hansenii ATCC
           23769]
 gi|295977314|gb|EFG84074.1| hypothetical protein GXY_10439 [Gluconacetobacter hansenii ATCC
           23769]
          Length = 357

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 83/349 (23%), Positives = 157/349 (44%), Gaps = 11/349 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  + +M  M+  I    +  L  F + +L A I+ F++WPIY     ++  +    A+ 
Sbjct: 1   MVERIMMGLMLGGIAFGCILILYPFMSALLWAAILTFSTWPIYVRL--RRHTNPLIAALG 58

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR---WLSDIPG-GMWASE 121
            TV    + +VPL  +   G++E+ + +   + +    I +P    WL  IP  G   +E
Sbjct: 59  MTVMSAVVMVVPLTLVVSSGIVELPQTLPDAIDSITTVIHLPSLPVWLQHIPHLGPQMNE 118

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            W K      ++  +   +        +        M        +   +   FFF+  G
Sbjct: 119 TWEKWRVDVGNIDQMIRPYSGRLVQWALGGI-----MQLASGLAHLGMALFMAFFFWLGG 173

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            ++     S+   +   Y  +I  I+ + IR T  G+   A+ +G++ G  + +AG+ + 
Sbjct: 174 EALGATFVSVVRRIAGGYADRILGIIGRTIRGTVYGIIGTALLQGVLTGIGFAIAGIANP 233

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           V  G ITA ++++P GAP+ +   + +L +  +      L L+G I +   D  +RP  +
Sbjct: 234 VLWGGITAFISVLPIGAPLIWIPAAFFLFVAHHPGWGVFLLLYGTIIVSGADHIMRPMFI 293

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
               +LP+L T  G++GG+ T G LG+F+GPVL+ +   +  E      
Sbjct: 294 ARGAQLPYLLTVLGVLGGIWTFGGLGIFLGPVLIGVGYTLTAEFAAGDP 342


>gi|283833356|ref|ZP_06353097.1| putative membrane protein [Citrobacter youngae ATCC 29220]
 gi|291070999|gb|EFE09108.1| putative membrane protein [Citrobacter youngae ATCC 29220]
          Length = 366

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 132/346 (38%), Gaps = 7/346 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  +   +WPI            +   ++ T+ ++ L
Sbjct: 18  LFLAIMIVACLWIVQPFILGFAWAGTVVIATWPILLRLQKILWGRRSLAVLVMTLLLVLL 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           FI+P+  L    +     L+   V A    +P   WL++IP  G      W   L    S
Sbjct: 78  FIIPIALLVNSIVDGSGPLI-HAVTAGDMTLPDLAWLNNIPLVGAKMYGAWHSLLDMGGS 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  ++  +    
Sbjct: 137 AIMAKVRPYIGATTTWFVGQAAHIGRFMMHCGLMLLFSAL----LYWRGEQVALGIRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    + GVP    L V+  +  
Sbjct: 193 CRLASKRGDAAILLAAQAIRAVALGVVVTALVQAVLGGIGLAVTGVPYATLLAVLMILSC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G+    T L +W    +  +D  +RP L+     LP +  
Sbjct: 253 LVQLGPLPVLVPAIIWLYWTGDSTWGTVLLVWSG-VVGTLDNVIRPMLIRMGADLPLILI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G++GG+   G++GLFIGPV++A+   ++   +            
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVVLAVSWRLFSAWVNEAPAPGSDPDE 357


>gi|237731304|ref|ZP_04561785.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226906843|gb|EEH92761.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 369

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 69/345 (20%), Positives = 131/345 (37%), Gaps = 7/345 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  I   +WPI            +   ++ T+ ++ L
Sbjct: 18  LFLAILIVACLWIVQPFILGFAWAGTIVIATWPILLRLQKLLWGRRSLAVLVMTLLLVLL 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           FI+P+  L    +     L+   V A    +P   WL+ IP  G      W   L    S
Sbjct: 78  FIIPIALLVNSIVDGSGPLI-HAVTAGDMTLPDLAWLNSIPLVGAKMYGAWHSLLDMGGS 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  ++  +    
Sbjct: 137 AIMAKVRPYIGTTTTWFVGQAAHIGRFMMHCGLMLLFSAL----LYWRGEQVALGIRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    + GVP    L V+  +  
Sbjct: 193 CRLASKRGDAAILLAAQAIRAVALGVVVTALVQAVLGGIGLAVTGVPYATLLAVLMILSC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G+    T L +W    +  +D  +RP L+     LP +  
Sbjct: 253 LVQLGPLPVLIPAIIWLYWTGDSTWGTVLLVWSG-VVGTLDNVIRPMLIRMGADLPLILI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
             G++GG+   G++GLFIGPV++A+   ++   +           
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVVLAVSWRLFSAWVNEAPAPGTNPD 356


>gi|297580751|ref|ZP_06942677.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297535167|gb|EFH74002.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 361

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 78/358 (21%), Positives = 151/358 (42%), Gaps = 10/358 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + +   ++   ++   L   + ++ +   ++ A II    +PI+  F  K    +   A 
Sbjct: 7   LASSHRVLVVALLASALACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAAF 66

Query: 65  IATVSVMCLFIVPLLFLFYYGMLE----MKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           ++ V +  + ++PLLF+F   + +     + L + V       +    W+  + G   A+
Sbjct: 67  LSCVVLTVIIVIPLLFIFGAIIQQGSKFSQNLYAWVTQGGIQALFNHPWV--VKGLSLAN 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                    PQ +      F  T G + +   A   G     + +    M+  LFF  RD
Sbjct: 125 HYLPFEEISPQQIAQRIGQFATTFGSNLVSISAKILGDAT-SFVMHFFLMLFVLFFLLRD 183

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   +  +   L  +   ++   +  V +S  +G  + AI +G+  G   WLAG P 
Sbjct: 184 HDKIISAIRHILP-LSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAGGIGMWLAGFPG 242

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  G +    + IP  G  + +   ++YL + G+   A  L +W    +  +D  LRPF
Sbjct: 243 -LFWGTMMGFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAVVGSIDNLLRPF 301

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           L+ G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       +   ++  
Sbjct: 302 LMQGSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQQD 359


>gi|118578847|ref|YP_900097.1| hypothetical protein Ppro_0405 [Pelobacter propionicus DSM 2379]
 gi|118501557|gb|ABK98039.1| protein of unknown function UPF0118 [Pelobacter propionicus DSM
           2379]
          Length = 374

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 74/347 (21%), Positives = 137/347 (39%), Gaps = 9/347 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             I  +I  S + L+ F   ++ A +I  T+WP+  S                + +++ L
Sbjct: 18  LFIAILISASFWVLRPFLTALVWATMIVITTWPLMLSLQKCLWGKRALAVAAMSAALLLL 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVL-ANQHGIPVPRWLSDIP--GGMWASELWTKHLSHP 130
            ++PL       +    ++V      A     P P W+  +P  G   A    T     P
Sbjct: 78  LVIPLTLAIVSIVERSDDIVGWARSLAMYTPAPPPAWVEQVPVIGPKLAERWRTLATIDP 137

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
             L       +K      + +  S      +   +  +  +I     Y  G   +  +  
Sbjct: 138 VELSARLAPHVKAIVGWIVAQTGS-----VMMMVVQFLLTVIISAVLYASGEKAAMGVRL 192

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
               L     +  S +  K IR   LG+ + A+ + L+ G    L+GVP+   L  +  I
Sbjct: 193 FAHRLGGKSGEDASILAAKAIRGVALGVVVTALAQALLGGIGLALSGVPAATLLTAVMFI 252

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + +   G  +      I+L  K      + + +W A+ +  +D  +RP L+     LP L
Sbjct: 253 LCVAQLGPSLVLIPAVIWLFWKDQTMWGSIMVVW-AVVVGTMDNFIRPILIKKGADLPLL 311

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
             F G++GG+   G++GLFIGPV++A+   +    +M  +  +E  +
Sbjct: 312 LIFAGVIGGLIAFGVIGLFIGPVMLAVTYTLLVAWVMGPEPTEEAAA 358


>gi|226330354|ref|ZP_03805872.1| hypothetical protein PROPEN_04271 [Proteus penneri ATCC 35198]
 gi|225201149|gb|EEG83503.1| hypothetical protein PROPEN_04271 [Proteus penneri ATCC 35198]
          Length = 370

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 74/357 (20%), Positives = 143/357 (40%), Gaps = 7/357 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
            T +         I F I+ S + L  F    + A +I   +WP+    I K+ +     
Sbjct: 7   HTDIPKILFTVLFISFFIIASFWILNPFIVGFIWAGMIVVATWPLLL-IIEKRVKYRWLS 65

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASE 121
            +I  + ++ +F++P++ L    +     L+      +    P   WL+D+P  G    +
Sbjct: 66  TMIMMILILLIFVIPIILLISSVIDNSAPLIELAKSPSNIQPPQLLWLNDVPMIGSSLYD 125

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            W   L    +  I           ++    A   G     + L +  M++     +  G
Sbjct: 126 TWHSILVSGGNALISKIQPYVGQAANWFFAQALNIGR----FALHLGVMLLFSGLLFLQG 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            ++   L      L          +    IR+  LG+ + A+ + +V G    ++GVP  
Sbjct: 182 ENVVSWLRHFAIRLAGQRGDAAILLASMSIRAVALGVVLTALIQAIVGGIGLAVSGVPYA 241

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             L VI  I  +   G  +      ++L   G+      + +WG   +  +D  LRP+L+
Sbjct: 242 TVLTVIMFICCLAQIGPLLVLIPSVLWLFWTGDTTWGIVMVIWGG-AVATMDGVLRPYLI 300

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                LP +    G++GG+ T+G++GLFIGPV++A+   +    I  + +    ++ 
Sbjct: 301 KMGADLPMVLILTGVIGGILTLGMIGLFIGPVVLAVAHSLLNAWINEVPKPNPDLTE 357


>gi|262163961|ref|ZP_06031700.1| predicted permease [Vibrio mimicus VM223]
 gi|262027489|gb|EEY46155.1| predicted permease [Vibrio mimicus VM223]
          Length = 361

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 80/351 (22%), Positives = 150/351 (42%), Gaps = 10/351 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + +   ++   ++   L   + ++ +   ++ A II    +PI+  F  K      F A 
Sbjct: 7   LASSHRVLVVALLASALACYWLVEPYINSIVMAFIISLLMFPIHEWFEKKLPSHDNFAAF 66

Query: 65  IATVSVMCLFIVPLLFLFYYGMLE----MKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           ++ V +  + ++PLLF+F   + +     + L + V       +    W+  + G   A+
Sbjct: 67  LSCVVLTVIIVIPLLFIFGAIVQQGSKFSQNLYAWVTHGGIQELFSHPWI--VKGLSLAN 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                    PQ +      F  T G + +   A   G     + ++   M+  LFF  RD
Sbjct: 125 HYLPFEEISPQQIAQRIGQFATTFGSNLVSISAKILGDAT-SFVMNFFLMLFVLFFLLRD 183

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   +  +   L  +   ++   +  V +S  +G  + AI +GL  G   WLAG P 
Sbjct: 184 HDKIISAIRHILP-LSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGLAGGIGMWLAGFPG 242

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  G +    + IP  G  + +   ++YL + G+   A  L +W    +  +D  LRPF
Sbjct: 243 -LFWGTMMGFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSIAVVGSIDNLLRPF 301

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+ G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       +
Sbjct: 302 LMQGSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFR 352


>gi|229512886|ref|ZP_04402353.1| hypothetical protein VCB_000528 [Vibrio cholerae TMA 21]
 gi|229350135|gb|EEO15088.1| hypothetical protein VCB_000528 [Vibrio cholerae TMA 21]
          Length = 361

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 78/358 (21%), Positives = 151/358 (42%), Gaps = 10/358 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + +   ++   ++   L   + ++ +   ++ A II    +PI+  F  K    +   A 
Sbjct: 7   LASSHRVLVVALLASALACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAAF 66

Query: 65  IATVSVMCLFIVPLLFLFYYGMLE----MKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           ++ V +  + ++PLLF+F   + +     + L + V       +    W+  + G   A+
Sbjct: 67  LSCVVLTVIIVIPLLFIFGAIVQQGSKFSQNLYAWVTQGGIQALFNHPWV--VKGLSLAN 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                    PQ +      F  T G + +   A   G     + +    M+  LFF  RD
Sbjct: 125 HYLPFEEISPQQIAQRIGQFATTFGSNLVSISAKILGDAT-SFVMHFFLMLFVLFFLLRD 183

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   +  +   L  +   ++   +  V +S  +G  + AI +G+  G   WLAG P 
Sbjct: 184 HDKIISAIRHILP-LSRSQEDRLLSEIESVSKSAVMGSFLTAIAQGVAGGIGMWLAGFPG 242

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  G +    + IP  G  + +   ++YL + G+   A  L +W    +  +D  LRPF
Sbjct: 243 -LFWGTMMGFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAVVGSIDNLLRPF 301

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           L+ G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       +   ++  
Sbjct: 302 LMQGSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQQD 359


>gi|120611907|ref|YP_971585.1| hypothetical protein Aave_3249 [Acidovorax citrulli AAC00-1]
 gi|120590371|gb|ABM33811.1| protein of unknown function UPF0118 [Acidovorax citrulli AAC00-1]
          Length = 350

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 77/343 (22%), Positives = 146/343 (42%), Gaps = 5/343 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +T L        +++ + L  L  L  F   V   +I+     P++   +      +   
Sbjct: 2   KTTLLQNRTFIALLIAVSLAFLAILWPFHGAVFWGVILAILFAPMHRRLLRLMPRRTNLA 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASE 121
           A+      + + I+P+  +    + E   +  ++            + ++ +P   WA +
Sbjct: 62  ALCTLTLCLLVVILPVTLITVSLVQEASLIYERIRSGQLDFTAYFHQVMAAMP--SWAMQ 119

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +  +      S      + +      F+   A  FG   L + +S   M+  LFF  RDG
Sbjct: 120 ILDRLDLTTASELQARLSSVTVQATQFVGGKAIDFGQNTLQFVVSFGIMLYLLFFLLRDG 179

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            +++ ++      L   + ++++     VIR+T  G   +A  +G + G A+W   + + 
Sbjct: 180 PALAARIRE-ATPLDEGHKRQLATKFTTVIRATVKGNIAVAAAQGALGGLAFWFLAIQAP 238

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           V  GV+ A ++++P  GA + +  V++YLL  G ++    L  +G   + +VD  LRP L
Sbjct: 239 VLWGVLMAFLSLLPAVGAGLIWAPVALYLLATGAVWQGVGLAAFGIGVIGLVDNVLRPVL 298

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           VG   K+P        +GG+   GL G  IGPV+ AL    W 
Sbjct: 299 VGKDTKMPDYVVLISTLGGMSLFGLTGFVIGPVIAALFIATWD 341


>gi|262172300|ref|ZP_06039978.1| predicted permease [Vibrio mimicus MB-451]
 gi|261893376|gb|EEY39362.1| predicted permease [Vibrio mimicus MB-451]
          Length = 361

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 80/351 (22%), Positives = 149/351 (42%), Gaps = 10/351 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + +   ++   ++   L   + ++ +   ++ A II    +PI+  F  K      F A 
Sbjct: 7   LASSHRVLVVALLASALACYWLVEPYINSIVMAFIISLLMFPIHEWFEKKLPSHDNFAAF 66

Query: 65  IATVSVMCLFIVPLLFLFYYGMLE----MKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           ++ V +  + ++PLLF+F   + +     + L + V       +    W+  + G   A+
Sbjct: 67  LSCVVLTVIIVIPLLFIFGAIVQQGSKFSQNLYAWVTHGGIQELFSHPWI--VKGLSLAN 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                    PQ +      F  T G + +   A   G     + ++   M+  LFF  RD
Sbjct: 125 HYLPFEEISPQQIAQRIGQFATTFGSNLVSISAKILGDAT-SFVMNFFLMLFVLFFLLRD 183

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   +  +   L  +   ++   +  V +S  +G  + AI +GL  G   WLAG P 
Sbjct: 184 HDKIISAIRHILP-LSRSQEDRLLNEIENVSKSAVMGSFLTAIAQGLAGGIGMWLAGFPG 242

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  G +    + IP  G  + +   ++YL + G    A  L +W    +  +D  LRPF
Sbjct: 243 -LFWGTMMGFASFIPVVGTALIWIPATLYLFLTGETTWAIFLAIWSIAVVGSIDNLLRPF 301

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+ G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       +
Sbjct: 302 LMQGSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFR 352


>gi|153829135|ref|ZP_01981802.1| putative lipoprotein [Vibrio cholerae 623-39]
 gi|148875393|gb|EDL73528.1| putative lipoprotein [Vibrio cholerae 623-39]
          Length = 361

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 78/358 (21%), Positives = 151/358 (42%), Gaps = 10/358 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + +   ++   ++   L   + ++ +   ++ A II    +PI+  F  K    +   A 
Sbjct: 7   LASSHRVLVVALLASALACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAAF 66

Query: 65  IATVSVMCLFIVPLLFLFYYGMLE----MKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           ++ V +  + ++PLLF+F   + +     + L + V       +    W+  + G   A+
Sbjct: 67  LSCVVLTVIIVIPLLFIFGAIVQQGSKFSQNLYAWVTQGGIQALFNHPWV--VKGLSLAN 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                    PQ +      F  T G + +   A   G     + +    M+  LFF  RD
Sbjct: 125 HYLPFEEISPQQIAQRIGQFATTFGSNLVSISAKILGDAT-SFVMHFFLMLFVLFFLLRD 183

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   +  +   L  +   ++   +  V +S  +G  + AI +G+  G   WLAG P 
Sbjct: 184 HDKIISAIRHILP-LSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAGGIGMWLAGFPG 242

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  G +    + IP  G  + +   ++YL + G+   A  L +W    +  +D  LRPF
Sbjct: 243 -LFWGTMMGFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSIAVVGSIDNLLRPF 301

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           L+ G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       +   ++  
Sbjct: 302 LMQGSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQQD 359


>gi|15640644|ref|NP_230273.1| hypothetical protein VC0624 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|9655058|gb|AAF93790.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
          Length = 361

 Score =  195 bits (497), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 77/358 (21%), Positives = 150/358 (41%), Gaps = 10/358 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + +   ++   ++   L   + ++ +   ++ A II    +PI+  F  K    +   A 
Sbjct: 7   LASSHRVLVVALLASALACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAAF 66

Query: 65  IATVSVMCLFIVPLLFLFYYGMLE----MKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           ++ V +  + ++PLL +F   + +     + L + V       +    W+  + G   A+
Sbjct: 67  LSCVVLTVIIVIPLLLIFGAIVQQGSKFSQNLYAWVTQGGIQALFNHPWV--VKGLSLAN 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                    PQ +      F  T G + +   A   G     + +    M+  LFF  RD
Sbjct: 125 HYLPFEEISPQQIAQRIGQFATTFGSNLVSISAKILGDAT-SFVMHFFLMLFVLFFLLRD 183

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   +  +   L  +   ++   +  V +S  +G  + AI +G+  G   WLAG P 
Sbjct: 184 HDKIISAIRHILP-LSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAGGIGMWLAGFPG 242

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  G +    + IP  G  + +   ++YL + G+   A  L +W    +  +D  LRPF
Sbjct: 243 -LFWGTMMGFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAVVGSIDNLLRPF 301

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           L+ G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       +   ++  
Sbjct: 302 LMQGSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQQD 359


>gi|241761186|ref|ZP_04759275.1| protein of unknown function UPF0118 [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241374805|gb|EER64266.1| protein of unknown function UPF0118 [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 352

 Score =  195 bits (497), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 92/333 (27%), Positives = 156/333 (46%), Gaps = 4/333 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES--STFLAVIATVSVM 71
                II + L+ ++ F+  ++ +++I    WP++                  +AT+++ 
Sbjct: 12  IFFAGIIGLGLWTIRHFWPALIWSIVIAIAFWPLWLKLKESMGSKHEKILAPALATLAIG 71

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              I+PLLF  +  M + +  +             P WL  IP   +   L  K      
Sbjct: 72  VTLILPLLFFAFEIMNDFQAAIHFFQDLKNQDTAPPDWLGRIPF--FGGNLVNKWHQFFA 129

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                S+  L       +   +  FGM       +  F +++LFF +R G  + +   ++
Sbjct: 130 PSSDGSQISLHQLLNGNVINHSRAFGMNVARRITTFFFTLMSLFFLFRSGSELQKMFLNV 189

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L     ++ +  V   +R T  G+ ++ +GEG++LG  Y   G P  V  G +TAI 
Sbjct: 190 SRRLMGPDMERFAHQVVLSVRGTLDGLVLVGLGEGVLLGIIYVFTGTPHAVMFGGMTAIA 249

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           A+IP  AP+ F  V+  L  +G+I  A  +   G + L I D  +RP L+GG  +LPFL 
Sbjct: 250 AIIPFCAPVMFCIVAAILASQGHIGAAITVVALGMLILMIADHVVRPILIGGATRLPFLW 309

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              G++GG+ T GLLGLF+GP LMA++ +IW++
Sbjct: 310 VLIGILGGIETFGLLGLFLGPALMAVLIMIWRD 342


>gi|229530430|ref|ZP_04419818.1| hypothetical protein VCG_003550 [Vibrio cholerae 12129(1)]
 gi|229332203|gb|EEN97691.1| hypothetical protein VCG_003550 [Vibrio cholerae 12129(1)]
 gi|327483427|gb|AEA77834.1| Predicted permease [Vibrio cholerae LMA3894-4]
          Length = 361

 Score =  195 bits (497), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 78/358 (21%), Positives = 152/358 (42%), Gaps = 10/358 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + +   ++   ++   L   + ++ +   ++ A II    +PI+  F  K    +   A 
Sbjct: 7   LASSHRVLVVALLASALACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAAF 66

Query: 65  IATVSVMCLFIVPLLFLFYYGMLE----MKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           ++ V +  + ++PLLF+F   + +     + L + V       +    W+  + G   A+
Sbjct: 67  LSCVVLTVIIVIPLLFIFGAIVQQGSKFSQNLYAWVTQGGIQALFNHPWV--VKGLSLAN 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                    PQ +      F  T G + +   A   G     + +    M+  LFF  RD
Sbjct: 125 HYLPFEEISPQQIAQRIGQFATTFGSNLVSISAKILGDAT-SFVMHFFLMLFVLFFLLRD 183

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
             +I   +  +   L  +   ++   +  V +S  +G  + AI +G+  G   WLAG P 
Sbjct: 184 HDTIISAIRHILP-LSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAGGIGMWLAGFPG 242

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  G +    + IP  G  + +   ++YL + G+   A  L +W    +  +D  LRPF
Sbjct: 243 -LFWGTMMGFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAVVGSIDNLLRPF 301

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           L+ G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       +   ++  
Sbjct: 302 LMQGSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQQD 359


>gi|320539515|ref|ZP_08039182.1| putative inner membrane protein [Serratia symbiotica str. Tucson]
 gi|320030368|gb|EFW12380.1| putative inner membrane protein [Serratia symbiotica str. Tucson]
          Length = 366

 Score =  195 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 69/347 (19%), Positives = 141/347 (40%), Gaps = 8/347 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             I  +I+ S + ++ F   +  A ++   +WP+            +   +  T+ ++ L
Sbjct: 18  LFIATMIIASFWVIQPFILSLAWAAMVVIATWPLLIKLQKLLWGRRSLAVMAMTLLLILL 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP--GGMWASELWTKHLSHPQ 131
           FI+P+  +    +     +++      +  +P   WL  +P  G    +       +   
Sbjct: 78  FILPISLMIGSLVDNSGPVIAWASTLGKLHMPEFVWLQSLPMFGDKIYNSYHALVNAGGA 137

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +L    + +       F+ + A+  G + L   L ++F +I     Y  G  ++  +   
Sbjct: 138 ALLAKMQPYFGQTATWFVAQ-AAHIGRLLLHCTLMLLFSVI----LYARGEQVALGIRHF 192

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L          +  + IR+  LG+ + A+ + ++ G    L+G+P+   L V+  I 
Sbjct: 193 AVRLGAERGDAAVLLGGQAIRAVALGVVVTALVQSVLGGIGLALSGIPAATWLTVLIFIC 252

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +   G  +      I+L   G+   AT L +W    +  +D  LRP L+     LP L 
Sbjct: 253 CVAQLGPLLVLVPAIIWLYWSGDTTWATVLVIWSC-VVATLDNVLRPMLIRMGADLPTLL 311

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
              G++GG+   GL+GLFIGPV++A+   +    +    +    +  
Sbjct: 312 ILLGVIGGLLAFGLIGLFIGPVVLAVSYRLLTAWMDEAAKPTTTLQD 358


>gi|161614223|ref|YP_001588188.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161363587|gb|ABX67355.1| hypothetical protein SPAB_01967 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 360

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 135/346 (39%), Gaps = 7/346 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  I   +WP+            +   ++ T+ ++ L
Sbjct: 6   LFLAIMIVACLWIVQPFILGFAWAGTIVIATWPVLLKLQKILWGRRSLAVLVMTLLLVLL 65

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           F++P+  L    +     L+   V      +P   WL++IP  G      W   L    S
Sbjct: 66  FVIPVALLVNSIVDGSGPLI-HAVTGGDMTLPDLAWLNNIPLVGAKLYAGWHSLLDMGGS 124

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  ++  +    
Sbjct: 125 AIMAKVRPYIGTTTTWFVGQAAHIGRFMMHCALMLLFSAL----LYWRGEQVAMGIRHFA 180

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  
Sbjct: 181 CRLAAKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGVGLAISGVPYATLLTVVMILSC 240

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G+    T L +W A  +  +D  +RP L+     LP L  
Sbjct: 241 LVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSA-VVGTLDNVIRPVLIRMGADLPLLLI 299

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G++GG+   G++GLFIGPVL+A+   ++   +  +     +   
Sbjct: 300 LSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEVPAPTNEPEE 345


>gi|78222370|ref|YP_384117.1| hypothetical protein Gmet_1154 [Geobacter metallireducens GS-15]
 gi|78193625|gb|ABB31392.1| protein of unknown function UPF0118 [Geobacter metallireducens
           GS-15]
          Length = 358

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 75/344 (21%), Positives = 149/344 (43%), Gaps = 3/344 (0%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             +  V    +  F   +  A +IG  ++PIY    +      T  A + T + +   +V
Sbjct: 16  AILGYVVYAIVSPFLNSLGWAAVIGILTFPIYRRLRAGLGARDTLAAGLMTPATVLTLVV 75

Query: 77  PLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           P + L ++ + E       +  +A   G  +   + + P           +         
Sbjct: 76  PFVGLTFFLVQEAAVAYGFLEKIAADGGESLVMSIQNHPVVKPWIARIEAYTGPLGFEID 135

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                        +  ++         + + ++ M+I LFF YRDG  + +   ++   L
Sbjct: 136 TRFLPEMKEVAARVLNYSKEIVKNVFIFSIKLLLMVITLFFIYRDGERVQRHALAVIP-L 194

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
             A  + ++  V +V+++   G+ +  + +G + G  +W AG+PS +  G I A+ A+IP
Sbjct: 195 TEANKQILTDTVRRVLKAVMYGVFLTCLVQGALGGIGFWAAGLPSPLLFGAIMAVCALIP 254

Query: 256 G-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G  + +   +IYLL  G +     L +WG + +  +D  +RPF + G  KLP L    
Sbjct: 255 VVGTGLIWLPAAIYLLANGEVVKGIGLIIWGFVAVSSIDNVIRPFFISGRAKLPVLVIAI 314

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           G +GG+ + GLLG   GP+++AL   +++     ++  + + +S
Sbjct: 315 GGLGGLASFGLLGAVAGPIVLALFLALFEMYRDEVETGEGRGNS 358


>gi|149926550|ref|ZP_01914811.1| hypothetical protein LMED105_14163 [Limnobacter sp. MED105]
 gi|149824913|gb|EDM84127.1| hypothetical protein LMED105_14163 [Limnobacter sp. MED105]
          Length = 359

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 108/357 (30%), Positives = 174/357 (48%), Gaps = 3/357 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M E +  P+ ++  +   +ILV     L  F   +L A II    WP++     +     
Sbjct: 1   MAEHLRQPKSLISTLFTVLILVGAAIVLSPFLLAILWAGIIATAFWPLHCRIRGRFPGKP 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMW 118
              A + T+ V  L + P++ L  + + ++ E+ + +  A+  G+ VP WL  IP  G  
Sbjct: 61  NGAAFLTTLVVAFLLVGPMIGLIVFMVQDILEITTFLRQADDSGVAVPDWLPQIPVLGEM 120

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
               W ++LS P+ +  L    L     D +   AS   +  L    ++ F +  LFFFY
Sbjct: 121 LVASWQEYLSVPKQISGLLRETLTQRLGD-VQGTASAILLELLGRVATLFFALWVLFFFY 179

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           RDG SIS +++ +G       WK     +P  +R+   G+ I++  E ++L   +   GV
Sbjct: 180 RDGSSISIRMNRIGTDWLGQRWKPYVSHMPPALRAAVNGLVIVSFAEAVILSVLFAACGV 239

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + V LG ITA++A IP  AP     + + L + G+   A  L   G + + I D  +RP
Sbjct: 240 YAPVLLGTITALIAFIPMAAPGLLAILGMILFLSGHGAEAIVLITVGMLVVLIADYLVRP 299

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            L+ G   LPFL   FG+ GGV TMG++GL IGPVL+ L+ V + E+  A   +  +
Sbjct: 300 LLIQGGTHLPFLAVLFGVFGGVITMGIVGLIIGPVLLVLLVVFFDEASHAHHHDTPE 356


>gi|330821380|ref|YP_004350242.1| hypothetical protein bgla_2g22990 [Burkholderia gladioli BSR3]
 gi|327373375|gb|AEA64730.1| hypothetical protein bgla_2g22990 [Burkholderia gladioli BSR3]
          Length = 356

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 103/338 (30%), Positives = 171/338 (50%), Gaps = 8/338 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSF--ISKKEESSTFLAVIATVSVM 71
            +   ++ ++L+ ++ F   V  A +I    WP       +       T ++++ T +V 
Sbjct: 23  VLYTALVALALWVIREFLPAVAWAGVIAIALWPALRRIDEVPWLSGRHTVVSIVLTSAVG 82

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-MWASELWTKHLSHP 130
            L +VP+         ++ E+ +    A  +GIPVP  +S +P G    S  W  +L+ P
Sbjct: 83  LLLVVPVAVAVVQAAGQVHEVFAWARDARLNGIPVPDAVSHLPFGAQQVSTWWQANLAQP 142

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
               + + T +K    +    +   FG   +   +   FM++ LF  +R G +IS  L  
Sbjct: 143 ----LHAPTGVKAMNSEAFVSYGKAFGSRVVHAAVLFGFMLVTLFVIFRAGPNISASLMR 198

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
             +  F A    + + +   I  T  G+ ++ +GEG +LG AY  AGVP    LG++TA+
Sbjct: 199 GVQRAFGANGASLIQRMASAIYGTVTGLVVVGLGEGALLGIAYAFAGVPHAALLGLVTAV 258

Query: 251 MAMIPGGAPISFTAVSIYLLI-KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            AM+P  API F   +I+L + +G    A  L ++G + +F+ +  +RP L+GG  +LPF
Sbjct: 259 AAMLPFCAPIVFCGAAIWLFLVQGATGWAIGLAVFGFVVVFVAEHFVRPVLIGGSARLPF 318

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           L   FG++GG  T GLLGLFIGP LM ++ V+W E I 
Sbjct: 319 LLVLFGILGGAETFGLLGLFIGPALMTVLTVLWTEWIH 356


>gi|254226734|ref|ZP_04920310.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|125620751|gb|EAZ49109.1| conserved hypothetical protein [Vibrio cholerae V51]
          Length = 361

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 78/358 (21%), Positives = 151/358 (42%), Gaps = 10/358 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + +   ++   ++   L   + ++ +   ++ A II    +PI+  F  K    +   A 
Sbjct: 7   LASSHRVLVVALLASALACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAAF 66

Query: 65  IATVSVMCLFIVPLLFLFYYGMLE----MKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           ++ V +  + ++PLLF+F   + +     + L + V       +    W+  + G   A+
Sbjct: 67  LSCVVLTVIIVIPLLFIFGAIVQQGSKFSQNLYAWVTQGGIQALFNHPWV--VKGLSLAN 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                    PQ +      F  T G + +   A   G     + +    M+  LFF  RD
Sbjct: 125 HYLPFEEISPQQIAQRIGQFATTFGSNLVSISAKILGDAT-SFVMHFFLMLFVLFFLLRD 183

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   +  +   L  +   ++   +  V +S  +G  + AI +G+  G   WLAG P 
Sbjct: 184 HDKIISAIRHILP-LSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAGGIGIWLAGFPG 242

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  G +    + IP  G  + +   ++YL + G+   A  L +W    +  +D  LRPF
Sbjct: 243 -LFWGTMMGFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSIAVVGSIDNLLRPF 301

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           L+ G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       +   ++  
Sbjct: 302 LMQGSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQQD 359


>gi|304415417|ref|ZP_07396069.1| putative inner membrane protein [Candidatus Regiella insecticola
           LSR1]
 gi|304282733|gb|EFL91244.1| putative inner membrane protein [Candidatus Regiella insecticola
           LSR1]
          Length = 353

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 72/337 (21%), Positives = 144/337 (42%), Gaps = 8/337 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             I+ +++ S   ++ F   +  A+++  T+WP+                ++ T+ ++  
Sbjct: 19  LFILTMMITSFLVIQPFIIGLTWAVMVVITTWPLLIKLQIVLWGRRVLAVIVMTLLLILF 78

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP--GGMWASELWTKHLSHPQ 131
           F++P+  L    ++    LV+          P   WL+ IP  G    +           
Sbjct: 79  FVIPIALLVNSLLINSAPLVAWASSPANMHFPEMEWLNAIPLIGSKIYNSWHNLVEGGAN 138

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            L      ++      F+ + A+  G   +   L ++F ++    FY  G  ++Q +   
Sbjct: 139 ELLAKLRPYVGEATTWFVAQ-AAHLGRFVVHLALMVLFSVL----FYFHGERVAQGIRRF 193

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L       +  +  + IR+  LG+ + A+ + ++ G A  +AG+P    L V+  I+
Sbjct: 194 AVRLADEKGDSVIVLAAQSIRAVALGLVVTALIQAVLGGIALAMAGIPYATLLTVLMFIL 253

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            ++  G  +      I+L   G+    + L +W  I L   D  LRP L+     LP + 
Sbjct: 254 CVVQLGPLLVLIPAIIWLYWSGDTTWGSILLVWSGI-LGTFDAVLRPALIRRGADLPMIL 312

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             FG++GG+ ++G++GLFIGPV++A+   +    I  
Sbjct: 313 ILFGVIGGLLSLGMIGLFIGPVVLAVSYRLILAWINE 349


>gi|283785082|ref|YP_003364947.1| putative outer membrane protein [Citrobacter rodentium ICC168]
 gi|282948536|emb|CBG88126.1| putative outer membrane protein [Citrobacter rodentium ICC168]
          Length = 370

 Score =  193 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 66/346 (19%), Positives = 132/346 (38%), Gaps = 7/346 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  I   +WP+            +   ++ T+ ++ L
Sbjct: 18  LFLAIMIVACLWIVQPFILGFAWAGTIVIATWPVLLRLQKLLWGRRSLAVLVMTLLLVLL 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           F++P+  L    +     L+   V      +P   WL+ IP  G      W   L    +
Sbjct: 78  FVIPVALLVNSIVDGSGPLI-HAVTGGDMTLPDLAWLNSIPLVGAKLYAGWHNLLDMGGA 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  ++  +    
Sbjct: 137 AIMAKVRPYLGATTTWFVGQAAHIGRFMVHCALMLLFSAL----LYWRGEQVAFGIRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  
Sbjct: 193 CRLAAKRGDAAILLAAQAIRAVALGVVVTALVQAVLGGIGLAISGVPYATLLTVVMILSC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G     T L +W    +  +D  +RP L+     LP +  
Sbjct: 253 LVQLGPLPVLVPAIIWLYWSGETTWGTVLLVWSC-VVGTLDNVIRPVLIRMGADLPLILI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G++GG+   G++GLFIGPVL+A+   ++   +       ++   
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEAPSPTDEPEQ 357


>gi|295699388|ref|YP_003607281.1| hypothetical protein BC1002_3752 [Burkholderia sp. CCGE1002]
 gi|295438601|gb|ADG17770.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1002]
          Length = 364

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 98/347 (28%), Positives = 175/347 (50%), Gaps = 7/347 (2%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS--KKEESST 60
           E     +     + + ++L++L+ ++ F   V  A ++    WP+     S       +T
Sbjct: 21  ERQKKQRAASVALYIGLVLLALWVVRDFIVVVAWAAVVAIALWPLLHKVASSPWFRGRTT 80

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-MWA 119
            LA + T+ +  L ++P+       + E  +L      A ++GIP+P +++ +P G    
Sbjct: 81  LLATVFTLVIAVLVLLPVGLGLAQALREAHDLNDWFRSAQENGIPLPDFINRLPFGVQQI 140

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           S  W  +L+ P    +     +K    + +      FG       +   FM++ LF  ++
Sbjct: 141 SSWWQANLAQP----LRGSAAMKGLHSETVMTLGRHFGARAAHAAMVFAFMLVTLFVIFQ 196

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G  +S  L       F      +   +   +R T  G+ ++ +GEGL+LG AY++ GVP
Sbjct: 197 AGPRLSGSLLKAARRGFGDSGADLVAHMGTAVRGTVSGLIVVGVGEGLLLGVAYFVTGVP 256

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               LG +TAI AM+P  API F   +++LL++G++  A  L ++GA+ +F+ +  +RP 
Sbjct: 257 HAALLGFVTAIAAMLPFCAPIVFGLAALWLLVQGSMVAAAGLLVFGAVVVFVAEHFVRPV 316

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           L+G   +LPFL   FG++GG  T GLLG+FIGP LM ++ V+W + +
Sbjct: 317 LIGNSTRLPFLLVLFGILGGAETFGLLGIFIGPALMTVLMVLWTDLV 363


>gi|83858202|ref|ZP_00951724.1| hypothetical protein OA2633_01846 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853025|gb|EAP90877.1| hypothetical protein OA2633_01846 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 380

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 84/352 (23%), Positives = 155/352 (44%), Gaps = 12/352 (3%)

Query: 5   MLNPQGIMRWMIMFIIL----VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M + Q + R  I+ + L    + ++ ++GF +P+  A +      P++         SS+
Sbjct: 20  MSDRQALQRVFIVLLALGVSVIFIWMIRGFLSPLFMAAVFAMFLNPVHRFLKPITFGSSS 79

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW--LSDIPGGMW 118
             A +  V  + + ++PL  +      +  ++   V    Q  I + R   +  +P  + 
Sbjct: 80  AAAGLVLVLAVFVVLIPLTAILALVADQAVQVTGTVAPWLQDQIRLIREGGIEALPDWLP 139

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             E     L+  Q           +N   ++     +         L ++ M+ ALFFF 
Sbjct: 140 FRE----SLAPYQQDITNQAAQFASNAGGWLVDGLRKATSGTFGAFLDLVVMLFALFFFL 195

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
             G S+++    L   +       +       IR+T  G  +IAI +G++ G A  LAGV
Sbjct: 196 TRGPSLAEHGLKLMP-MPREDRDLLVERAMSTIRATVKGTFVIAIIQGVLTGIALALAGV 254

Query: 239 PSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P  +    +T ++++IPG G P+ +    I+L+  G+      L  WGA+ + ++D  LR
Sbjct: 255 PGALFWATVTTVLSVIPGIGPPLVWGPAGIWLIASGHYVAGGLLIAWGALVVGLIDNLLR 314

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           P LVG   KLP L      +GG+   G +G+ +GP++ AL + IW    ++ 
Sbjct: 315 PRLVGQDAKLPDLMILISTLGGLTLFGAVGIIVGPMIAALFSSIWYLYALSY 366


>gi|258592868|emb|CBE69177.1| conserved membrane protein of unknown function [NC10 bacterium
           'Dutch sediment']
          Length = 378

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 72/326 (22%), Positives = 137/326 (42%), Gaps = 7/326 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +  F +P+  A+I+     P+Y   + +    S   A++ T++V+   ++P +   +  
Sbjct: 39  IIVPFASPIFWAVILVVVFQPVYRRLLHRLGGKSGLAALLLTIAVIAAVMIPAILSGWVL 98

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT-- 143
             E            Q        ++  P  M    LW +       L       L    
Sbjct: 99  TQEAVSFYQAAERVYQQEG--LAGIASHPAVMAGRVLWDRVSLPFTRLGFDLNALLLGGL 156

Query: 144 -NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                FI        +  L + +++   +   FF  RDG +I   L  +   L   + + 
Sbjct: 157 GAVSSFIVDNLKGIAINLLSFTVNLFLAVFTFFFLLRDGEAIVYSLQRILP-LERKHAEA 215

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
           +   + + + +   G  + A+ +G++ G  YW  GVP  V LG+ TA+ +++P GG+ + 
Sbjct: 216 LFSRLYEAVSAVVRGTIVTALAQGILGGVGYWAVGVPYPVFLGLATALFSLLPVGGSAVI 275

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +   + YL ++G       L  W  + +   D  L+P L+ G   LP L  FFG++GG++
Sbjct: 276 WIPAAFYLFLEGGWIRGLLLLAWSTVVVSTADNVLKPALISGGTNLPTLFLFFGMLGGLQ 335

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIM 347
             G+LG  +GPVL+  ++   +    
Sbjct: 336 VFGILGFILGPVLLVTLSTFLEIYTA 361


>gi|254563916|ref|YP_003071011.1| hypothetical protein METDI5602 [Methylobacterium extorquens DM4]
 gi|254271194|emb|CAX27206.1| Conserved hypothetical protein, putative inner membrane protein,
           putative permease [Methylobacterium extorquens DM4]
          Length = 359

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 103/331 (31%), Positives = 167/331 (50%), Gaps = 7/331 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKK--EESSTFLAVIATVSVMCLFIVPLLFLF 82
           Y L GF   ++ A+++    WP+ +    +      +     + T  V  + ++P+  L 
Sbjct: 32  YILSGFLRALVWAVVLAIALWPLLNRAHRRFPPGRHNILWPAVFTGLVALVLLLPIGVLA 91

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA-SELWTKHLSHPQSLKILSETFL 141
                E  +L++    A ++GIPVP +++ +P G  A +E W  HL+H      LSE   
Sbjct: 92  VEAGREAHDLLAYAREAERNGIPVPDFVARLPYGAAAVTEWWNAHLAHAGLAHELSERLN 151

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            T+  D         G   +   +   F ++ALFF +R+G ++  Q       LF    +
Sbjct: 152 TTSNRDL----TRSLGAGLVHRVVLFGFCLLALFFLFREGDTVIAQSLRASHRLFGPRGE 207

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +++R +   +  T  G+ ++ IGEG +LG  Y  AGVP  V  G +TA+ AMIP GAP++
Sbjct: 208 RVARQMVASVHGTVDGLVLVGIGEGFLLGIVYAFAGVPHPVLFGALTAVAAMIPFGAPLA 267

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F   +  LL  G    A  +   G +  F+ D  +RP L+GG  +LPFL    G++GGV 
Sbjct: 268 FGLAAALLLAGGAAVPAAIVVAAGFVVTFVADHFVRPALIGGTTRLPFLWVLLGILGGVE 327

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           T GLLGLF+GP +MA + ++W+E     +E 
Sbjct: 328 TFGLLGLFVGPAVMAALILLWREFTEGSQEP 358


>gi|330994579|ref|ZP_08318502.1| UPF0118 inner membrane protein ydiK [Gluconacetobacter sp. SXCC-1]
 gi|329758220|gb|EGG74741.1| UPF0118 inner membrane protein ydiK [Gluconacetobacter sp. SXCC-1]
          Length = 390

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 89/360 (24%), Positives = 165/360 (45%), Gaps = 10/360 (2%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           +M+  + +M  M+  I    +  L  F   +L A I+ F++WP++     ++  S    A
Sbjct: 31  SMMVERIMMGLMLGGIAFGCVLILYPFMTALLWAAILTFSTWPVFMRL--RRGMSLLPAA 88

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA--NQHGIPVPRWLSDIPG-GMWAS 120
           ++ T+    + +VPL+ +    + ++   +  +V A    H  P+P  ++ IP  G   +
Sbjct: 89  MVMTLLCALVLVVPLVIVVSNSIADVPATLQYIVDAVGTLHLPPLPARVAHIPHFGPEIA 148

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           + W K      S+  +   +        I +      M        +   +   FFF+  
Sbjct: 149 DKWQKWSEDVGSIDQVVRPYAGR-----IGQSVLSAMMQLASGMAHLAMALFISFFFWLG 203

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +     ++   +   Y  +I  IV + IR T  G+   AI +G++ G  + +AG+ S
Sbjct: 204 GDGLGTTFVAVVRRIAGVYADRILGIVGRTIRGTVYGILGTAIIQGILTGIGFAIAGISS 263

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            V LG ITA +A++P GAP+ +   +++LL+  +      L L+G I +   D  +RP  
Sbjct: 264 PVLLGAITAFVAVLPIGAPLIWIPAAVFLLLTHHPGWGIFLLLYGTIIVSGADHIIRPMF 323

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           +    +LP+L T  G++GGV T G LG+F+GPVL+ +   +  E       +   I  + 
Sbjct: 324 IARGAQLPYLLTVLGVLGGVLTFGGLGIFLGPVLIGVGYTLTAEFAAGDPRSNNPIPDDL 383


>gi|289807066|ref|ZP_06537695.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 355

 Score =  192 bits (489), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 136/349 (38%), Gaps = 7/349 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +   +  +I+  L+ ++ F      A  I   +WP+            +   ++ T+ +
Sbjct: 2   AIGAFLAIMIVACLWIVQPFILGFAWAGTIVIATWPVLLKLQKILWGRRSLAVLVMTLLL 61

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSH 129
           + LF++P+  L    +     L+   V      +P   WL++IP  G      W   L  
Sbjct: 62  VLLFVIPVALLVNSIVDGSGPLI-HAVTGGDMTLPDLAWLNNIPLVGAKLYAGWHSLLDM 120

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S  +            +    A+  G   +   L ++F  +     Y  G  ++  + 
Sbjct: 121 GGSAIMAKVRPYIGTTTIWFVGQAAHIGRFMMHCALMLLFSAL----LYWRGEQVAMGIR 176

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  
Sbjct: 177 HFACRLAAKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGVGLAISGVPYATLLTVVMI 236

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  ++  G         I+L   G+    T L +W A  +  +D  +RP L+     LP 
Sbjct: 237 LSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSA-VVGTLDNVIRPVLIRMGADLPL 295

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L    G++GG+   G++GLFIGPVL+A+   ++   +  +     +   
Sbjct: 296 LLILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEVPAPTNEPEE 344


>gi|261212265|ref|ZP_05926551.1| predicted permease [Vibrio sp. RC341]
 gi|260838873|gb|EEX65524.1| predicted permease [Vibrio sp. RC341]
          Length = 361

 Score =  192 bits (488), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 79/360 (21%), Positives = 151/360 (41%), Gaps = 10/360 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + +   ++   ++   L   + ++ +   ++ A II    +PI+     K        A 
Sbjct: 7   LASSHRVLVVALLASALACYWLVEPYINSIVMAFIISLLMFPIHDWLDRKLPSHHNISAF 66

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ V +  + ++PLLF+F   + +  +    +     HG    + L   P  + A  L  
Sbjct: 67  LSCVVLTVIVVIPLLFIFGAIVQQGSKFSQNLYSWVTHGG--IQELLSHPWVVKALGLAN 124

Query: 125 KHLSH----PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           ++L      PQ +      F  T G + +   A   G     + ++   M+  LFF  RD
Sbjct: 125 QYLPFEEISPQQIAQRVAQFATTFGSNLVSISAKILGDAT-SFVMNFFLMLFVLFFLLRD 183

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   +  +   L  +   ++   +  V +S  +G  + AI +G   G   WLAG P 
Sbjct: 184 HDKIISAIRHILP-LSRSQEDRLLNEIENVSKSAVMGSFLTAIAQGFAGGIGMWLAGFPG 242

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  G +    + IP  G  + +   ++YL + G    A  L +W    +  +D  LRPF
Sbjct: 243 -LFWGTMMGFASFIPVVGTALIWIPATLYLFLIGETTWAFFLAIWSIAVVGSIDNLLRPF 301

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           L+ G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       +   ++   +
Sbjct: 302 LMQGSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQQDQS 361


>gi|71909670|ref|YP_287257.1| hypothetical protein Daro_4061 [Dechloromonas aromatica RCB]
 gi|71849291|gb|AAZ48787.1| Protein of unknown function UPF0118 [Dechloromonas aromatica RCB]
          Length = 351

 Score =  191 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 80/338 (23%), Positives = 147/338 (43%), Gaps = 9/338 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIY-SSFISKKEESSTFLAVIATVSVMCL 73
           +++ +I+  +  L  F   VL A ++   +W  Y    + +     T  A + T++++ +
Sbjct: 15  LVVLLIIGCITVLLPFIGAVLFAFVVWMCTWRFYAEKLLPRLGGRDTLGASLMTLALVLV 74

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIP--VPRWLSDIPG-GMWASELWTKHLSHP 130
            ++P++FL          L+  +    + G+P   P WLS +P  G      W +  S+ 
Sbjct: 75  TLLPMIFLAGSLANGTDNLIDFIKPYVEQGLPANPPAWLSALPFFGTEIDSTWHRLASNR 134

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           + L       +         +F    G I  +  L +  ++   FF YRDG +IS  L  
Sbjct: 135 EELNATVRQLVAPA-----RQFVLALGGIAANGLLQLALVLFVTFFLYRDGAAISHALYV 189

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
               L     + +       +    LG+   A  +G V    + +AGVP  + LG  T  
Sbjct: 190 GARKLGGDLGENMLDKARGTVVGVMLGIVGTAAAQGTVAMIGFLIAGVPQAMLLGFATFF 249

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           ++MIP G P+ +   + +L   G    A  + ++G   +  +D  ++P L+     L  L
Sbjct: 250 LSMIPVGPPLIWGGAAAWLYSDGQTGWAIFMVIYGLFGISSIDNFVKPILIAYGAGLSIL 309

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
               G++GGV   G +G+F+GPVL+AL  ++ +  I  
Sbjct: 310 LIALGVLGGVLVFGFIGIFLGPVLLALGDMLLQRWIRE 347


>gi|262401678|ref|ZP_06078244.1| predicted permease [Vibrio sp. RC586]
 gi|262352095|gb|EEZ01225.1| predicted permease [Vibrio sp. RC586]
          Length = 361

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 78/360 (21%), Positives = 152/360 (42%), Gaps = 10/360 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + +   ++   ++   L   + ++ +   ++ A II    +PI++    K        A 
Sbjct: 7   LASSHRVLVVALLASALACYWLVEPYINSIVMAFIISLLMFPIHAWLDKKLPSHHNLSAF 66

Query: 65  IATVSVMCLFIVPLLFLFYYGMLE----MKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           ++ V +  + ++PLLF+F   + +     + L + V       +    W+  + G   A+
Sbjct: 67  LSCVVLTVIVVIPLLFIFGAIVQQGSKFSQNLYAWVTQGGIQEVLNHPWV--VKGLSLAN 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                    PQ +      F  T G + +   A   G     + ++   M+  LFF  RD
Sbjct: 125 HYLPFEEISPQQIAQRIGQFATTFGTNLVSISAKILGDAT-SFVMNFFLMLFVLFFLLRD 183

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   +  +   L  +   ++   +  V +S  +G  + AI +GL  G   WLAG P 
Sbjct: 184 HDKIISAIRHILP-LSRSQEDRLLNEIENVSKSAVMGSFLTAIAQGLAGGIGMWLAGFPG 242

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  G +    + IP  G  + +   ++YL + G    A  L +W    +  +D  LRPF
Sbjct: 243 -LFWGTMMGFASFIPVVGTALIWIPATLYLFLIGETSWAIFLAIWSIAVVGSIDNLLRPF 301

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           L+ G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       +   ++  ++
Sbjct: 302 LMQGSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQQDNS 361


>gi|268592592|ref|ZP_06126813.1| putative membrane protein [Providencia rettgeri DSM 1131]
 gi|291312006|gb|EFE52459.1| putative membrane protein [Providencia rettgeri DSM 1131]
          Length = 371

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 68/344 (19%), Positives = 135/344 (39%), Gaps = 6/344 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I+ +I    + L  F    + A ++   +WP+     ++         ++  + ++ LF+
Sbjct: 20  IVLMIAACFWVLNPFILGFVWAGMMVIATWPLLLRLEARLWHKRWLATLVMVLLILLLFV 79

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLK 134
           +PL  L    +     L+      +   +P   WL+ IP  G      W   ++   +  
Sbjct: 80  IPLGILIGSIIENSTPLIDLAKSPSSLTLPDLEWLNTIPMVGEKIYYAWHSLVASGGNAL 139

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           +            +    A   G       L ++F  +     Y  G S+   +      
Sbjct: 140 LAKIQPYFGQAAGWFATQAISAGRFVFHLMLMLLFSGL----LYLKGESVMVSIRHFAVR 195

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L          +  + IR+  LG+ + A+ + +V G    L+G+     L V+  I  + 
Sbjct: 196 LAGIRGDAAVVLAAQSIRAVALGVVVTALIQAIVGGIGLALSGIGYAAILTVLLFICCVA 255

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G  +      I+L   G+      L +W A  +  +D  LRP+L+     LP +    
Sbjct: 256 QLGPLLIMVPSVIWLFWTGDTTWGIILAIW-AAVVATMDGVLRPWLIKMGADLPMVLILV 314

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           G++GG+ + G++GLFIGPV++A+   + K  +  +    E ++ 
Sbjct: 315 GVIGGILSFGMIGLFIGPVVLAVSYSLLKAWMNEVAVPSEDLTE 358


>gi|258405391|ref|YP_003198133.1| hypothetical protein Dret_1267 [Desulfohalobium retbaense DSM 5692]
 gi|257797618|gb|ACV68555.1| protein of unknown function UPF0118 [Desulfohalobium retbaense DSM
           5692]
          Length = 371

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 84/357 (23%), Positives = 149/357 (41%), Gaps = 8/357 (2%)

Query: 7   NPQGIMRWMIMFIILVS---LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
             Q   R  ++    VS   L+ +KGF+ PV   +++     P+Y   +          +
Sbjct: 7   TDQAQKRAFVLLTAGVSAGFLWLVKGFWQPVFWGILLAIVFQPLYRQVLRLCHGRQRLGS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           VI   S++   ++PL  L    M E   L  +V L+ +  I  P  L +         L 
Sbjct: 67  VITVSSIVLGVVLPLFVLALAVMQESLSLYQQV-LSGKIDIQQPVRLVEQSLPQLVDGLE 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              +   +  +ILS+T L+     F+     R G   +   +  + M+  L+FF++DG  
Sbjct: 126 RIGIDFDRLREILSQTALR--ASQFLANHLFRIGQSTVQVLIQTLIMLYLLYFFFKDGQG 183

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           I   L      L     + +     +V R+T  G  +I I +G + G  +W+ G+   + 
Sbjct: 184 IVNVLVRTIP-LGDRRERLLFNRFAEVARATIKGTLVIGIVQGGIGGGLFWILGLQGALL 242

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            GV+  +++++P  G+ + +    I L+  G       L   G++ + + D  LRP LVG
Sbjct: 243 WGVLMVLLSILPVVGSALVWGPAGIILIATGAYLKGGILLATGSVVIGLADNILRPALVG 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              +LP        +GG+   GL G  IGPV+ AL   +W+   +   +        
Sbjct: 303 RETRLPDYLILLATLGGLAVYGLAGFVIGPVVAALFLTVWEMFGLEFGKGDVAAEEE 359


>gi|288940576|ref|YP_003442816.1| hypothetical protein Alvin_0838 [Allochromatium vinosum DSM 180]
 gi|288895948|gb|ADC61784.1| protein of unknown function UPF0118 [Allochromatium vinosum DSM
           180]
          Length = 401

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 74/353 (20%), Positives = 157/353 (44%), Gaps = 6/353 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +  M + I  + L  ++ F   +L A I    + P+Y    ++   S +  +++  +
Sbjct: 8   KATVILMTLAISALFLAMIQPFLMTLLLAGIFSALARPLYLRLQARLGCSESIASLLTLL 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  + ++P +FL    + +  ++   + +  +  I  P   +D    +     + + + 
Sbjct: 68  LIAVMVLIPSVFLITILIGQALDVSELISIWVRGVIEDP---TDFLAALQHLPFYDEVIE 124

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           H + L +       T     +  + S   +  +++      ++ +LFF   DG     +L
Sbjct: 125 H-RGLILEQAGQAATLVSKLLVDWVSSVTLKTVNFVFLTFVLLYSLFFLLMDGPKFILKL 183

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 L     + +      V R+T  G  +I + +G + G A+ +AG+ + V  G + 
Sbjct: 184 LYYLP-LHTRDERLMLDKFTSVTRATLKGSFLIGVLQGGLAGIAFAVAGIDNAVFWGTLM 242

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A++++IP  GA + +    I L+ +G +  A  L L+  + +  +D  LRP LVG   ++
Sbjct: 243 ALLSIIPNVGAALVWIPAVIILIAQGAVLTAILLALFCGLIVGSLDNVLRPILVGKDTRM 302

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
             L  FF  +GG+   GL GLFIGPV+ +L+  IW+   +   +   ++  + 
Sbjct: 303 HELMIFFSTLGGLLMFGLPGLFIGPVIASLLISIWEIYGVEFADVLPEVDESL 355


>gi|198282946|ref|YP_002219267.1| hypothetical protein Lferr_0810 [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218666280|ref|YP_002425149.1| hypothetical protein AFE_0661 [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198247467|gb|ACH83060.1| protein of unknown function UPF0118 [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218518493|gb|ACK79079.1| membrane protein, putative [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 351

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 87/343 (25%), Positives = 154/343 (44%), Gaps = 10/343 (2%)

Query: 13  RWMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           + +   +    ++  L  F   +  A I+ + +WP+               A  AT+ + 
Sbjct: 17  QLLAAVLFFALVWKILSPFLPALGWAAILVYATWPLAGPMRRHWP--PVPAAAGATLMLA 74

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +FI+P++FL      E+  +++ +   + H   +   L+ IP       L       P 
Sbjct: 75  LIFILPVIFLSISLGTELHHVLTDLGSVDAHTT-LEASLNRIPW------LHELLAQIPA 127

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           + K        T  +                +   +I ++I  FFFYR G  +  QL   
Sbjct: 128 AWKTKLMPGALTPDLSAWAGRLGSVAGGIGRFGTLLILVLITAFFFYRHGEVLVDQLRRF 187

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              +         R V   IR+   G+   A+ +G + G  YW+AG+P+ V L ++T + 
Sbjct: 188 VGQVLGQRGDAYLRTVASTIRAVIYGILATAVAQGALAGLGYWVAGLPAPVLLAIVTLLF 247

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           + IP G P+ + A SI+LL +G I+    L LWG + +  +D  +RP ++   +++PFL 
Sbjct: 248 SFIPFGTPLVWGAASIWLLSQGEIWAGVGLALWGTLVVSWIDNLIRPLVISNAVRIPFLL 307

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             FG++GG+   G LGLF+GPVL+A++  IW E +       +
Sbjct: 308 VLFGVLGGILAFGFLGLFLGPVLLAVLLAIWSEWLRPAPAAPQ 350


>gi|34497807|ref|NP_902022.1| hypothetical protein CV_2352 [Chromobacterium violaceum ATCC 12472]
 gi|34103663|gb|AAQ60024.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 364

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/342 (18%), Positives = 137/342 (40%), Gaps = 7/342 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            ++  +++  L  L+ F   +  A II  ++WP+YS    +        A++  +++   
Sbjct: 20  AILALLVVACLKVLQPFLGALTWAAIIAISAWPLYSRLKLRLRGRHKLAALLIVLALSAA 79

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPG-GMWASELWTKHLSHPQ 131
             +P+  +       +  L +         +P  P WL+++P  G    +LW    +   
Sbjct: 80  LAIPIGLMALTLADTLPHLANLAHDLTSFRLPDAPAWLTNLPVVGDSLQKLWQSTQADLP 139

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                    +    +  +       G       L I+  I        +G  +   ++ +
Sbjct: 140 GFFEKVRPAINQAALWLLSG-----GANLGLSLLEIVLAIAVAGLLLINGDKLWDLVERI 194

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L       +  ++ + IRS   G+   A+ + ++      +AGVP  + LG +  I+
Sbjct: 195 VVKLGGETAGDLPEVIARTIRSVTTGVVGTALAQTILCVIGLLIAGVPGALVLGFLCFIV 254

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           A+      + +   + ++   G+      L +WG + +  +D  L+P L+    ++P   
Sbjct: 255 AVAQMPTLVVWLPAAAWVFYTGHTGLGVFLLIWGFLLINTIDNILKPLLISQGAQMPLSV 314

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            F G++GG+   G++GLFIGP L+A+   + +  +      +
Sbjct: 315 IFLGVIGGLIAWGVIGLFIGPTLLAVGLTMLRHWLQREDNEE 356


>gi|260771194|ref|ZP_05880121.1| predicted permease [Vibrio furnissii CIP 102972]
 gi|260613791|gb|EEX38983.1| predicted permease [Vibrio furnissii CIP 102972]
 gi|315179200|gb|ADT86114.1| Predicted permease [Vibrio furnissii NCTC 11218]
          Length = 361

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 75/352 (21%), Positives = 147/352 (41%), Gaps = 14/352 (3%)

Query: 8   PQGIMRWMIMFIILV----SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
                 W+++  +L         +K +   ++ A II    +PI+    +K        +
Sbjct: 6   KISSSHWVLIVALLAAAFTCYLLVKPYVNSIVMAFIISLLMFPIHEKLEAKLPSHKNLAS 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLE----MKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
           +++ + +  + ++PLLF+F   + +     + +   V       +    W+  + G   A
Sbjct: 66  LLSCIILTFIIVIPLLFVFGAIVQQGSKFSQNVYQWVTHGGIQTVFNHPWV--VKGLSLA 123

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           +         PQ +         + G + +   A   G    ++ ++ + M+  LFF  R
Sbjct: 124 NHYLPFDEIQPQQIAQKVGQLATSFGSNLVGISAKILGDAT-NFIMNFLLMLFVLFFLLR 182

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D   I   +  +   L  +   K+   + +V +S  +G  + AI +G   G   W+AG P
Sbjct: 183 DHDKIITAIRHILP-LSRSQEDKLLSEIEQVSKSAVMGSFLTAIAQGAAGGFGMWMAGFP 241

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             +  G +    + IP  G  + +   +IYL + G+   A  L +W    +  +D  LRP
Sbjct: 242 G-LFWGTMMGFASFIPLVGTALIWIPATIYLFLIGDTTWAIFLGVWSVAVVGSIDNLLRP 300

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            L+ G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       K
Sbjct: 301 LLMQGSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFK 352


>gi|56413662|ref|YP_150737.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197362586|ref|YP_002142223.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56127919|gb|AAV77425.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197094063|emb|CAR59563.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 372

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 69/338 (20%), Positives = 134/338 (39%), Gaps = 7/338 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  I   +WP+            +   ++ T+ ++ L
Sbjct: 18  LFLAIMIVACLWIVQPFILGFAWAGTIVIATWPVLLKLQKILWGRRSLAVLVMTLLLVLL 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           F++P+  L    +     L+   V      +P   WL++IP  G      W   L    S
Sbjct: 78  FVIPVALLVNSIVDGSGPLI-HAVTGGDMTLPDLAWLNNIPLVGAKLYAGWHSLLDMGGS 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  ++  +    
Sbjct: 137 AIMAKVRPYIGTTTTWFVGQAAHIGRFMMHCALMLLFSAL----LYWRGEQVAMGIRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  
Sbjct: 193 CRLAAKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGVGLAISGVPYATLLTVVMILSC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G+    T L +W A  +  +D  +RP L+     LP L  
Sbjct: 253 LVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSA-VVGTLDNVIRPVLIRMGADLPLLLI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             G++GG+   G++GLFIGPVL+A+   ++   +  + 
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEVP 349


>gi|193211909|ref|YP_001997862.1| hypothetical protein Cpar_0235 [Chlorobaculum parvum NCIB 8327]
 gi|193085386|gb|ACF10662.1| protein of unknown function UPF0118 [Chlorobaculum parvum NCIB
           8327]
          Length = 368

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 82/346 (23%), Positives = 149/346 (43%), Gaps = 6/346 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + ++    + I  + L  ++ F   +L A I    ++P++S F+S   E  +  A++  
Sbjct: 10  NKIVVLVAALLISALFLAMIRHFLVTILLAGIFAGLAYPLFSRFLSLSGERRSLSAILTL 69

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
                +  +PL+ +F   + +   L   V+   +  +  P  L  +  G+     +    
Sbjct: 70  TIFFLIVFMPLVAVFSIVVGQAISLSKTVIPLVRDQLQDPEALPSLISGLP---FYHDIE 126

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            +   +       L   G   I  F++       D  L  I     +FF  RDG ++  +
Sbjct: 127 KYSDLILGRIAEVLGNLGTTVISSFSAFTWSALYDIAL-FIIFWYTMFFLLRDGHTLMAK 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + +    L     K++      V R++  G  IIA+ +G + G A+ +AG+ + V  G I
Sbjct: 186 IQNYLP-LAENDQKRLLDRFVSVTRASLKGSLIIAVVQGSLAGLAFHVAGIENAVFWGAI 244

Query: 248 TAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A+++++P  G+P+ +    I     GN   A  L L+ +I +  +D  +RP LVG    
Sbjct: 245 MAMLSILPLIGSPLIWVPAVIIQAFSGNYVEAIGLLLFCSIVVGQIDNVMRPILVGRDTS 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           +  L  FFG +GG+   GL G  IGPV+ AL   +W        E 
Sbjct: 305 MHELFIFFGTLGGIGMFGLPGFIIGPVVAALFVTVWDIYGETFSEP 350


>gi|258625580|ref|ZP_05720466.1| putative lipoprotein [Vibrio mimicus VM603]
 gi|258582133|gb|EEW06996.1| putative lipoprotein [Vibrio mimicus VM603]
          Length = 361

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 79/351 (22%), Positives = 148/351 (42%), Gaps = 10/351 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + +   ++   ++   L   + ++ +   ++ A II    +PI+  F  K      F A 
Sbjct: 7   LASSHRVLVVALLASALACYWLVEPYINSIVMAFIISLLMFPIHEWFEKKLPSHDNFAAF 66

Query: 65  IATVSVMCLFIVPLLFLFYYGMLE----MKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           ++ V +  + ++PLLF+F   + +     + L + V       +    W+  + G   A+
Sbjct: 67  LSCVVLTVIIVIPLLFIFGAIVQQGSKFSQNLYAWVTHGGIQELFSHPWI--VKGLSLAN 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                    PQ +      F  T G + +   A   G     + ++   M+  LFF  RD
Sbjct: 125 HYLPFEEISPQQIAQRIGQFATTFGSNLVSISAKILGDAT-SFVMNFFLMLFVLFFLLRD 183

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   +  +   L  +   ++   +  V +S  +G  + AI +GL  G   WLAG P 
Sbjct: 184 HDKIISAIRHILP-LSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGLAGGIGMWLAGFPG 242

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  G +    + IP  G  + +   ++YL + G    A  L +W    +  +   LRPF
Sbjct: 243 -LFWGTMMGFASFIPVVGTALIWIPATLYLFLTGETTWAIFLAIWSIAVVGSIYNLLRPF 301

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+ G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       +
Sbjct: 302 LMQGSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFR 352


>gi|320155419|ref|YP_004187798.1| putative permease [Vibrio vulnificus MO6-24/O]
 gi|319930731|gb|ADV85595.1| predicted permease [Vibrio vulnificus MO6-24/O]
          Length = 361

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 79/352 (22%), Positives = 146/352 (41%), Gaps = 14/352 (3%)

Query: 8   PQGIMRWMIMFIILV----SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
                 W+++  +L         ++ +   ++ A II    +PI+  F SK  +     +
Sbjct: 6   KISSSHWVLIVALLAAGTACYLLVEPYINSIIMAFIISLLMFPIHDWFESKMPKHRNMAS 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKEL----VSKVVLANQHGIPVPRWLSDIPGGMWA 119
           +++ V +  + +VPLLF+F   + +           V       +    W+  + G    
Sbjct: 66  LLSCVVLTFIIVVPLLFVFAAIVQQGSVFSQNTYQWVTHGGIQQVLGHPWI--VKGLKLV 123

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           +E         +S+         + G + +   A   G    ++ +    M+  LFF  R
Sbjct: 124 NEYLPFDNIDAKSIAEKIGQLATSFGSNLVAISAKILGDAT-NFLMDFFLMLFVLFFLLR 182

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D   I   +  +   L  +   K+   +  V +S  +G  + AI +G+  G   WLAG P
Sbjct: 183 DHDKIISAIRHILP-LSRSQEDKLLSEIENVSKSAVMGSFLTAIAQGIAGGLGMWLAGFP 241

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             +  G +    + IP  G  + +   +IYL + G+   A  L +W    +  +D  LRP
Sbjct: 242 G-LFWGTMMGFASFIPVVGTALIWIPATIYLFLTGDTGWAIFLAIWSIAIVGSIDNLLRP 300

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           FL+ G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       K
Sbjct: 301 FLMQGSAGMNTLLIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFK 352


>gi|170742961|ref|YP_001771616.1| hypothetical protein M446_4853 [Methylobacterium sp. 4-46]
 gi|168197235|gb|ACA19182.1| protein of unknown function UPF0118 [Methylobacterium sp. 4-46]
          Length = 361

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 97/349 (27%), Positives = 167/349 (47%), Gaps = 6/349 (1%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE-ESST 60
           RE           +++ +  V L+ L  F   ++ A+I+    WP+Y+    +     + 
Sbjct: 11  REPDSFHAAARVALVLGLAAVGLWTLHEFLPALVWAVILAIALWPLYARIAGRHRAGRTI 70

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-MWA 119
               + T+    + +VPL  L      E ++++       + G PVP +++ +P G    
Sbjct: 71  LWPALFTLGAALVVLVPLAVLAVQAAREARDVLHFWRQIEEQGWPVPDFVARLPFGASQV 130

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           +  W   LSHP      S   L       +      FG   +   +   F ++ LFF +R
Sbjct: 131 ASWWQDTLSHPAG----SSELLHRLDRSSLLGVGRSFGGQIVHRAMLFGFTLLTLFFLFR 186

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG +++ Q  +    LF    ++++  +   +  T  G+ ++ +GEG++LG  Y  AGVP
Sbjct: 187 DGPALAGQALAACRRLFGPRGERVAHQMAASVHGTVDGLVLVGLGEGVLLGIVYAFAGVP 246

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             V LG  TA+ AMIP  AP+ F   +     +G++  A  + + G +  F+ D  +RP 
Sbjct: 247 HPVLLGAFTALAAMIPFAAPVVFALAAALAAAQGSLVAAAVVVVAGFVVTFVADHFVRPA 306

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L+GG  +LPFL    G++GGV T GLLGLF+GP +MA + ++W+E    
Sbjct: 307 LIGGATRLPFLWVLLGILGGVETFGLLGLFLGPAIMAALVLLWREYTEG 355


>gi|161503539|ref|YP_001570651.1| putative inner membrane protein [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864886|gb|ABX21509.1| hypothetical protein SARI_01616 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 372

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 69/338 (20%), Positives = 133/338 (39%), Gaps = 7/338 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  I   +WP+            +   ++ T+ ++ L
Sbjct: 18  LFLAIMIVACLWIVQPFILGFAWAGTIVIATWPVLLKLQKILWGRRSLAVLVMTLLLVLL 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           F++P+  L    +     L+   V      +P   WL+ IP  G      W   L    S
Sbjct: 78  FVIPVALLVNSIVDGSGPLI-HAVTGGDMTLPNLAWLNTIPLVGAKLYAGWHSLLDMGGS 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  ++  +    
Sbjct: 137 AIMAKVRPYIGTTTTWFVGQAAHIGRFMMHCALMLLFSAL----LYWRGEQVAMGIRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  
Sbjct: 193 CRLAAKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAISGVPYATLLTVVMILSC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G+    T L +W A  +  +D  +RP L+     LP L  
Sbjct: 253 LVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSA-VVGTLDNVIRPVLIRMGADLPLLLI 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             G++GG+   G++GLFIGPVL+A+   ++   +  + 
Sbjct: 312 LSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEVP 349


>gi|149190146|ref|ZP_01868422.1| predicted permease [Vibrio shilonii AK1]
 gi|148836035|gb|EDL52996.1| predicted permease [Vibrio shilonii AK1]
          Length = 357

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 146/346 (42%), Gaps = 10/346 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++   ++F        ++ +   ++ A I+    +PI+    SK  +    +A+++ + +
Sbjct: 9   VLILALLFAAFACYLLVEPYMNSIVMAFILSLLMFPIHEWIESKMPKHKNVVALLSCIVL 68

Query: 71  MCLFIVPLLFLFYYGMLE----MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
             + ++PLL +F   + +     + +   V       +    W+    G  + ++     
Sbjct: 69  TFIIVMPLLLVFSAIVQQGSVFSQNMYQWVTGGGIQEVIAHPWVKK--GLSFINDYLPFD 126

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
             + Q +   +  F  + G + +   A   G    ++ ++   M+  LFF  RD   I  
Sbjct: 127 AINAQDIAQKAAEFATSLGSNLVATSAKILGDAT-NFLMNFFLMLFVLFFLLRDHDKIIA 185

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +  +      +   ++   + KV +S  +G  + AI +G   G   W+AG P  +  G 
Sbjct: 186 AIRHILP-FSRSQEDRLLNEIEKVSKSAVMGSFLTAIAQGAAGGFGMWMAGFPG-LFWGT 243

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +    + IP  G  + +   + YLLI G+      L +W    +  +D  LRP L+ G  
Sbjct: 244 MMGFASFIPVVGTALIWIPATAYLLITGDTTWGLFLAVWSIAVVGSIDNVLRPLLMQGSA 303

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            +  L  FF L+GG+   GL+GL  GP++ A+  V++       K+
Sbjct: 304 GMNTLMIFFSLLGGIHLFGLIGLIYGPLIFAITMVLFNMYEEEFKD 349


>gi|27365038|ref|NP_760566.1| putative permease [Vibrio vulnificus CMCP6]
 gi|27361184|gb|AAO10093.1| Predicted permease [Vibrio vulnificus CMCP6]
          Length = 361

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 79/352 (22%), Positives = 146/352 (41%), Gaps = 14/352 (3%)

Query: 8   PQGIMRWMIMFIILV----SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
                 W+++  +L         ++ +   ++ A II    +PI+  F SK  +     +
Sbjct: 6   KISSSHWVLIVALLAAGTACYLLVEPYINSIIMAFIISLLMFPIHDWFESKMPKHRNMAS 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKEL----VSKVVLANQHGIPVPRWLSDIPGGMWA 119
           +++ V +  + +VPLLF+F   + +           V       +    W+  + G    
Sbjct: 66  LLSCVVLTFIIVVPLLFVFAAIVQQGSVFSQNTYQWVTHGGIQQVLGHPWI--VKGLKLV 123

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           +E         +S+         + G + +   A   G    ++ +    M+  LFF  R
Sbjct: 124 NEYLPFDNIDAKSIAEKIGQLATSFGSNLVAISAKILGDAT-NFLMDFFLMLFVLFFLLR 182

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D   I   +  +   L  +   K+   +  V +S  +G  + AI +G+  G   WLAG P
Sbjct: 183 DHDKIISAIRHILP-LSRSQEDKLLSEIENVSKSAVMGSFLTAIAQGIAGGLGMWLAGFP 241

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             +  G +    + IP  G  + +   +IYL + G+   A  L +W    +  +D  LRP
Sbjct: 242 G-LFWGTMMGFASFIPVVGTALIWIPATIYLFLTGDTGWAIFLAIWSIAIVGSIDNLLRP 300

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           FL+ G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       K
Sbjct: 301 FLMQGSGGMNTLLIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFK 352


>gi|319941451|ref|ZP_08015779.1| hypothetical protein HMPREF9464_00998 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805071|gb|EFW01901.1| hypothetical protein HMPREF9464_00998 [Sutterella wadsworthensis
           3_1_45B]
          Length = 383

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 86/337 (25%), Positives = 161/337 (47%), Gaps = 6/337 (1%)

Query: 11  IMRWMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           I+R + M ++ V  Y  L+ F   +L A ++   +WP+++   S   +SST  A +  +S
Sbjct: 24  IIRIVFMVVVAVGCYLVLEPFLTAILIAAVLAVVTWPVFNKLRSGMRQSSTAAASVMVLS 83

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++ L ++PL FL      ++   V       +  +P+ + +  IP               
Sbjct: 84  IVVLVLIPLSFLLVALAQQVPRGVQAAAAWLKDPLPILQAVQSIPYAGDWLYGELVSAID 143

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
           PQ+     +  L+      +        +      + + F+   +FFFYRDG   + ++ 
Sbjct: 144 PQTFAHTMQRILEPLSTWVL-----NAAVNVGSGVMQLAFVTFIVFFFYRDGSWFADRIS 198

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           ++ E +     ++I++I+    RS   G+   AIG+GLV G  +W+AGVP  + L     
Sbjct: 199 AVVERVSGGIAEEITKILVNTTRSVVFGIVGTAIGQGLVAGIGFWIAGVPGVLILSFAVC 258

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++++IP G P+ +   +++L  KG +  A  L LWG + +  VD  ++P L+     +P 
Sbjct: 259 VLSVIPIGPPLIWLPAAVWLWSKGELGMAAFLVLWGTLAVSSVDNFIKPLLIARGTSMPI 318

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
              F G+ GGV   G LGL +GP+L+A+   ++   +
Sbjct: 319 ALIFLGVFGGVLAFGFLGLILGPLLLAVGIALFSAWL 355


>gi|37680914|ref|NP_935523.1| permease [Vibrio vulnificus YJ016]
 gi|37199664|dbj|BAC95494.1| predicted permease [Vibrio vulnificus YJ016]
          Length = 361

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 80/352 (22%), Positives = 147/352 (41%), Gaps = 14/352 (3%)

Query: 8   PQGIMRWMIMFIILV----SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
                 W+++  +L         ++ +   ++ A II    +PI+  F SK  +     +
Sbjct: 6   KISSSHWVLIVALLAAGTACYLLVEPYINSIIMAFIISLLMFPIHDWFESKMPKHRNMAS 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKEL----VSKVVLANQHGIPVPRWLSDIPGGMWA 119
           +++ V +  + +VPLLF+F   + +           V       +    W+  + G    
Sbjct: 66  LLSCVVLTFIIVVPLLFVFAAIVQQGSVFSQNTYQWVTHGGIQQVLGHPWI--VKGLKLV 123

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           +E         +S+         + G + +   A   G    ++ +    M+  LFF  R
Sbjct: 124 NEYLPFDNIDAKSIAEKIGQLATSFGSNLVAISAKILGDAT-NFLMDFFLMLFVLFFLLR 182

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D   I   +  +   L  +   K+   +  V +S  +G  + AI +G+  G   WLAG P
Sbjct: 183 DHDKIISAIRHILP-LSRSQEDKLLSEIENVSKSAVMGSFLTAIAQGIAGGLGMWLAGFP 241

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             +  G +    + IP  G  + +   +IYLL+ G+   A  L +W    +  +D  LRP
Sbjct: 242 G-LFWGTMMGFASFIPVVGTALIWIPATIYLLLTGDTGWAIFLAIWSIAIVGSIDNLLRP 300

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           FL+ G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       K
Sbjct: 301 FLMQGSAGMNTLLIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFK 352


>gi|307294633|ref|ZP_07574475.1| protein of unknown function UPF0118 [Sphingobium chlorophenolicum
           L-1]
 gi|306879107|gb|EFN10325.1| protein of unknown function UPF0118 [Sphingobium chlorophenolicum
           L-1]
          Length = 369

 Score =  189 bits (480), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 74/336 (22%), Positives = 140/336 (41%), Gaps = 5/336 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G+    ++ + +     ++ FFA +L  +I      P+  + +          A +  + 
Sbjct: 14  GVFLGFVLIVSIAFALVIEPFFAAILWGVIAAILFAPVNQALLDMMPRRRNSSAALTLLL 73

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV-PRWLSDIPGGMWASELWTKHLS 128
           ++ L IVP   L    + E     +KV     +   +  ++ + +PG  WA+    +   
Sbjct: 74  IIALVIVPAFILAMALVQEATIFTAKVQSGEINFARIFAQFQASLPG--WAAAFLERLGI 131

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +      +    +    +   A + G     + +++  M+   FF  RDG  ++  +
Sbjct: 132 TNFAAVREMLSEGIASSFRTVATQALQIGQSAFSFLMALGVMLYLTFFLLRDGPLLAAMV 191

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D         Y + + R    V R+T  G  ++AI +G++ G  +W  G+P  +  GV+ 
Sbjct: 192 DRAAPMRT-TYRQALMRQFVIVTRATIKGSIVVAIVQGVIGGMVFWALGLPGALLWGVLM 250

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
              ++IP  G  + +  V+IYL + G +     L   G   + +VD  LRP LVG   ++
Sbjct: 251 GAFSLIPAVGTGLVWVPVAIYLFVTGAVVEGLILAFCGMFVIGMVDNILRPVLVGRDTRI 310

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           P        +GG+   G  G+ IGPV+ AL    W 
Sbjct: 311 PDYVVLITTLGGIDLFGFNGIVIGPVIAALFIATWN 346


>gi|326386386|ref|ZP_08208009.1| hypothetical protein Y88_2280 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326209047|gb|EGD59841.1| hypothetical protein Y88_2280 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 375

 Score =  189 bits (480), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 91/344 (26%), Positives = 172/344 (50%), Gaps = 6/344 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL-AVIATVSVMCLF 74
           +  ++L  ++ L  F   +    I   + WPI+    +           ++ T+ V+ +F
Sbjct: 33  VAVLVLAGIWTLHPFLPALGWGGIFAISLWPIHERCAAHWPSGRGLALPILFTLLVLLIF 92

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +VP++ +    + +       +  AN  G+PVP +++ +P G   +  W  +L  P+S+ 
Sbjct: 93  VVPMVMVASAVIHDSMAATQWLATANTQGVPVPDFVAHLPYGDHLAAWWQSYLGTPESIS 152

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
            LS         D   +   +         + + FM++ LFF  RDG S++Q L      
Sbjct: 153 RLSHR-----ATDMHLQTGEKILGGLAHRLILLFFMLLTLFFLLRDGTSVAQALRIGSRR 207

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F    ++++    + IR T  G+ I+  GEG++LG AY L+GV     LG++T +++ I
Sbjct: 208 AFGEAGERVAHQAAQAIRGTVNGLVIVGFGEGVLLGFAYELSGVTHAALLGLLTGLLSAI 267

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P GA ++  A +  L+  G+I  A  + + G + +F+ D  +RP  +GG  +LPFL    
Sbjct: 268 PFGAMVAVAAAAGLLVADGSILAAGIVLVIGIVVIFVADHFVRPAFIGGATRLPFLWVLL 327

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           G++GG+ T GL+GL +GP ++A++ ++W+E +  +K     +  
Sbjct: 328 GILGGIETWGLIGLVMGPAIIAVLMLLWREWVGMVKGPLNPVEE 371


>gi|171056705|ref|YP_001789054.1| hypothetical protein Lcho_0013 [Leptothrix cholodnii SP-6]
 gi|170774150|gb|ACB32289.1| protein of unknown function UPF0118 [Leptothrix cholodnii SP-6]
          Length = 363

 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 83/327 (25%), Positives = 155/327 (47%), Gaps = 4/327 (1%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
              ++ F   +  A I+ + SWP++   ++       + A+  +  +     V LL+L  
Sbjct: 35  FVVMRPFLVSIAWAAILVYVSWPLHVRTLALLRGHRAWAALAMSGVLTLTLGVTLLWLGL 94

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
               E+     +V    Q G  +P  ++ IP          + L+     +   +  L  
Sbjct: 95  LLRGELILAFREVTALLQTGPHLPEPIARIP---LLGPWLQERLAEFGGDRAALKLQLTE 151

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
               +  R     G + ++  L     ++  FF +RDG  + +QL  + + L        
Sbjct: 152 LAEQWAGRTLRILGDVGVNALL-FGVALVTSFFLFRDGDRLLEQLRRILQGLLGERVDGY 210

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
              V    R+   G+ + A  +GL+ G  YW+AGV + V  G  TA++A+IP GAP+ + 
Sbjct: 211 FNAVGDTTRAVVYGLLLAATAQGLMAGLGYWVAGVKAPVFWGAATAVIALIPFGAPLVWG 270

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
           ++ ++LL++G +     L LWG + +  +D  +RP ++ G   +PFL   FG++GG+   
Sbjct: 271 SIGLWLLLQGQLGAGIGLLLWGGLAVSWIDNLVRPMVISGVADIPFLLVLFGVMGGLAAF 330

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIK 350
           GL+GLF+GPV++A++  +W+E    I+
Sbjct: 331 GLIGLFVGPVVLAVLLALWREWAAVIE 357


>gi|148254442|ref|YP_001239027.1| hypothetical protein BBta_2998 [Bradyrhizobium sp. BTAi1]
 gi|146406615|gb|ABQ35121.1| putative membrane protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 359

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 75/344 (21%), Positives = 148/344 (43%), Gaps = 5/344 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++  +++ I L   + L  F+  VL  L+      P++              A +  + 
Sbjct: 7   RVLLVLLVAITLTLGWILLPFYGAVLWGLVGAVVFAPLHRRLARSMHGRDGLAAAVVVLL 66

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWASELWTKHLS 128
           V+ + I+PL  +      +   + ++        G    + +  +P   W  +L  +   
Sbjct: 67  VVLIVIIPLSLIGAALAQQATGVYAQAQSGQLDIGQYFQKMMEALP--TWVVDLLNRFGL 124

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +      + +   G   I   A   G    ++ +++  M+  LFF  RD  ++S+++
Sbjct: 125 GSLAGLKDRLSAVLLRGSQMIAGQALNIGQGTFEFFVNLFLMLYLLFFLLRDQDALSERI 184

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +    L       +      VIR+T  G  ++A+ +G + G  +W  G+ + +   V+ 
Sbjct: 185 -ATAIPLRTEQRNALLHKFTVVIRATVKGNLVVALAQGALGGLIFWFLGITAPLLWAVVM 243

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A ++++P  GA + +  V++YLL  G I++   L  +GA+ + +VD  LRP LVG   K+
Sbjct: 244 AFLSLLPAVGAGLVWFPVALYLLATGAIWHGVILIAYGALVIGLVDNLLRPILVGQDTKM 303

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           P        +GG+   GL G  IGP + A+   IW     A ++
Sbjct: 304 PDYVVLISTLGGIEAFGLNGFIIGPAMAAMFIAIWSMFSDARRD 347


>gi|21674815|ref|NP_662880.1| hypothetical protein CT2004 [Chlorobium tepidum TLS]
 gi|21648033|gb|AAM73222.1| membrane protein, putative [Chlorobium tepidum TLS]
          Length = 366

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 90/352 (25%), Positives = 157/352 (44%), Gaps = 9/352 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           M  PQ     +++  +L+S  FL   + F   +L A I    ++P++S FI+      + 
Sbjct: 1   MNTPQFNKIAVLVATLLISALFLTMIRQFLVTILLAGIFTGLAYPLFSRFITLTRGHRSL 60

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A +  V    +  +PLL +F   +L+   L S  +   +  +  P     +   +    
Sbjct: 61  SASMTLVIFFMMVFLPLLAVFTVVILQAVSLSSTAIPLIREQLRDPEGFLRMLSSLP--- 117

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            +    S+   +   +   L   G   +  F++       D  L  I     +FF  RDG
Sbjct: 118 FYKDIESYSDLILEKAAEILGNLGSSVLSSFSAITWTAIYDLVL-FIIFWYTMFFLLRDG 176

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +++      L  +  +++      V R++  G  IIA+ +G + G A+++AG+   
Sbjct: 177 HELLERIKYYLP-LNESDQRRLFDRFVSVTRASLKGSLIIAVIQGTLAGLAFYVAGINQA 235

Query: 242 VALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           V  G I A+++++P  G+PI +    I L + GN   A  LFL+ +I +  +D  LRP L
Sbjct: 236 VFWGAIMAMLSLLPLIGSPIIWVPAVIILALSGNYAQAIGLFLFCSIIVGQIDNVLRPIL 295

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           VG    +  L  FFG +GG+   GL G  IGPV+ AL   +W        E+
Sbjct: 296 VGRDTSMHELFIFFGTLGGIGMFGLPGFIIGPVVAALFVTVWDIYGETFNES 347


>gi|118579221|ref|YP_900471.1| hypothetical protein Ppro_0783 [Pelobacter propionicus DSM 2379]
 gi|118501931|gb|ABK98413.1| protein of unknown function UPF0118 [Pelobacter propionicus DSM
           2379]
          Length = 353

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 78/336 (23%), Positives = 146/336 (43%), Gaps = 7/336 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
              + +  +    L  F   ++ A  IG  S+P+Y   +++        AV  T  V+  
Sbjct: 13  TFTLLMCYLLFTILAPFLTTMVWAGTIGAISYPLYDKLLARFRCRENLAAVAMTTLVVLA 72

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            I+PL+ L +    E       +            ++  I      S L  +      S 
Sbjct: 73  LIIPLVGLIFTLARETALAYQYIEGVTSGQS--GSFMESILRHPQVSPLLDRIRPLTGSF 130

Query: 134 KILSETFLKTN---GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +  ++ L      G+  +  +++     FL + + ++ M+I LFF YRDG    ++   
Sbjct: 131 NLELDSMLLPALKRGLASLLNYSTGIVKNFLGFLIKLMLMLITLFFIYRDGRHFLRRFWP 190

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +   +       I+  + +V+ +   G  +  + +G + G  +W+AG+PS    G++  +
Sbjct: 191 VVG-IDEKMRATIATTITRVLDAVLYGFLLTCLVQGTLGGLGFWVAGLPSPFLFGILMTV 249

Query: 251 MAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            A IP  G  + +   +IYLL +G I     L +W A+ +  +D  +RP  + G  KLP 
Sbjct: 250 CAPIPLIGTAMIWMPGAIYLLTQGRILAGVLLMVWSAVAVSGIDNIIRPLFISGRAKLPI 309

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
               FG++GG+   GL G+  GPV++AL  V ++  
Sbjct: 310 PVVIFGVLGGLLAFGLTGVVAGPVIVALFLVFFESY 345


>gi|146339666|ref|YP_001204714.1| hypothetical protein BRADO2660 [Bradyrhizobium sp. ORS278]
 gi|146192472|emb|CAL76477.1| conserved hypothetical protein; putative membrane protein
           [Bradyrhizobium sp. ORS278]
          Length = 359

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 79/345 (22%), Positives = 144/345 (41%), Gaps = 3/345 (0%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++ +++  I L   + L  F+  +L  ++      P++              A +  + 
Sbjct: 7   RVLLFLLAVITLALGWILLPFYGALLWGVVGAIVFAPLHRRVSQSMRGRDGLAAALVVLL 66

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + I+P   +      +   +  +V           + + D         L    L  
Sbjct: 67  VVLIIIIPFSLIAAALAQQAAGVYGQVQGGQLDVTQYFQKMLDALPSWIVDLLNRFGLGS 126

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              LK      L   G   I   A   G    ++ +S+  M+  LFF  RD  ++S+++ 
Sbjct: 127 LAGLKDRLSALL-LRGSQVIAGQALNIGQGTFEFFVSLFLMLYLLFFLLRDEETLSRRIA 185

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                L       +      VIR+T  G   +A+ +G + G  +W  G+ + +   V+ A
Sbjct: 186 DAIP-LRDEQRDALLAKFIIVIRATMKGNLAVALAQGALGGLIFWFLGITAPLLWAVVMA 244

Query: 250 IMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            M+++P  GA I +  V++YLL  G+I++   L  +GA+ + +VD  LRP LVG   K+P
Sbjct: 245 FMSLLPAVGAGIVWFPVALYLLATGSIWHGVILIAYGALVIGLVDNLLRPILVGQDTKMP 304

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                   +GG+   GL G  IGPV+ A+   +W    +   EN+
Sbjct: 305 DYVVLLSTLGGIEVFGLNGFIIGPVIAAMFIAVWDMFTVVRSENR 349


>gi|58038558|ref|YP_190522.1| hypothetical protein GOX0069 [Gluconobacter oxydans 621H]
 gi|58000972|gb|AAW59866.1| Hypothetical membrane-spanning protein [Gluconobacter oxydans 621H]
          Length = 359

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 81/357 (22%), Positives = 150/357 (42%), Gaps = 11/357 (3%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   + ++  ++  I       L  F + +L A I+ FT+WPIY              A+
Sbjct: 1   MTTERILLGLILAGIAYGCGIILWPFLSAILWAAILAFTTWPIYRRMRRHV--RPALAAL 58

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI---PVPRWLSDIP-GGMWAS 120
                     +VPL  L   G+ ++   +S++     H     P P WL+ IP  G    
Sbjct: 59  AMMALSALFIVVPLAVLTSAGISDIPGTISEIDTLILHVTSANPPPAWLNRIPMAGPHLV 118

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W        +                      R      +    ++  +   FF + +
Sbjct: 119 NAWHHFSHDVGAFATEVLRPYAGQIAHLTLTVLLRLAGGLAE----LVMALFVAFFLWLN 174

Query: 181 GFSISQQLDSLGEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           G ++   + +L + +   +   ++  I+ + +R T  G+   A+ +G++ G    LAGVP
Sbjct: 175 GDTLGNTITALIDRIAGPHTTPRLINIIGRTVRGTVYGILGTALIQGVLTGIGLMLAGVP 234

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           S V L  ITA +A+ P GAP+ +   +I+L +  +  +   L ++G + +   D  +RP 
Sbjct: 235 SPVLLAGITAFVAVFPIGAPLVWVPAAIWLGMTHHFGHGLFLAIYGILIISGADHVIRPA 294

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            +    +LP+L T  G++GG+ T G +G+F+GPVL+A+   +  E        +   
Sbjct: 295 FIARGAQLPYLLTVLGVLGGIVTFGGVGIFLGPVLLAVGYTLTSEFAAGPHHRERNP 351


>gi|320352416|ref|YP_004193755.1| hypothetical protein Despr_0280 [Desulfobulbus propionicus DSM
           2032]
 gi|320120918|gb|ADW16464.1| protein of unknown function UPF0118 [Desulfobulbus propionicus DSM
           2032]
          Length = 404

 Score =  186 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 77/344 (22%), Positives = 145/344 (42%), Gaps = 6/344 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + ++  +++ I  + L  ++ F  P+  A I      P +    ++        +++  
Sbjct: 7   NKSVLLALVLLISALFLDMIRQFLMPMFMAGIFSAILSPAHRWLTARIGNRENIASILVI 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V ++ L + PL  L    + +   +   V    Q  I  P  ++           + K +
Sbjct: 67  VGIVVLVLAPLSILVGVVVGQAISVSQSVTPWVQSFINEPTAIT----AYMEKFPYYKEI 122

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              +++ I     +  N   F+    S    + ++   S + M+  +F+F   G  +  +
Sbjct: 123 LPYRAVIIEKAGMMVGNLSTFLINSLSEVTKLTVNAVFSSVIMLYVMFYFLTMGEVLLTK 182

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L     +++ R    V ++T  G  II   +G + G A+ LAG+   V  G +
Sbjct: 183 ILYFLP-LQDRDERRLLRRFTSVTKATLKGTLIIGALQGFICGVAFALAGIQGPVFWGTV 241

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A+M++IP  G  I +    I L +KG  F A  L +        +D  LRP LVG   +
Sbjct: 242 MAVMSIIPAFGTAIVWVPALIILALKGQFFGAVILGVLCGAVAGNLDNLLRPRLVGKDTE 301

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +  L   FG +GG+   G+LG+ IGP++ AL   IW+    A +
Sbjct: 302 MHDLFVLFGTLGGISMFGVLGIIIGPIVAALFITIWEIYGKAFE 345


>gi|330984387|gb|EGH82490.1| hypothetical protein PLA107_05089 [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 351

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 82/358 (22%), Positives = 153/358 (42%), Gaps = 10/358 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M   +  P GI   +I+ ++  +LY L  F   +    +I F +WP    +I +      
Sbjct: 1   MISQLEKPIGIA--LIVGVLFAALYVLSPFAITLAWGALIAFATWPA-VKWIERTTGRLW 57

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV-PRWLSDIPG-GMW 118
             A      +  + + PL+ L      +       VV  ++  +P  P W++ +P  G +
Sbjct: 58  VGASAVCFMMFAVVLGPLVALSVSFAGDATVFTHWVVEMSKSTLPESPGWVTGLPWVGSY 117

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
               W+       +  +  + +L ++ I  I   +   G + ++  +S++F     F+F+
Sbjct: 118 LDHQWSLWHEKGPNWFLDVKPYL-SSLIHVIIGKSGVLGSVLVEIAISLLFA----FWFH 172

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            +G  I+         L      +   I    I     G+   +I + ++    +W+AGV
Sbjct: 173 LEGEKITNLAQKALHALIGQASSRYWEIARNTISGVINGVIGTSIAQAVLALIGFWIAGV 232

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + LGV T  +++IP G P+ +     +L  +G    A  L +W  + +  VD  L+P
Sbjct: 233 PGALLLGVGTFFLSLIPMGPPLLWVPAIGWLFYQGETGYAIFLAIWCVVVVSGVDHILKP 292

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            L+     LP      G++GG+ T+G LGLFIGPV +AL   + +E +         +
Sbjct: 293 ILISRGGVLPLPIVLIGIMGGMLTLGFLGLFIGPVCLALSFTLVREWLNQRASTAAAV 350


>gi|107026443|ref|YP_623954.1| permease-like [Burkholderia cenocepacia AU 1054]
 gi|105895817|gb|ABF78981.1| permease-like protein [Burkholderia cenocepacia AU 1054]
          Length = 385

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 64/253 (25%), Positives = 113/253 (44%), Gaps = 7/253 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+   F          T +A + T ++  L ++P+    
Sbjct: 35  WVIRDFIPAIAWACVIAIAMWPLLKRFESHRLFRSRPTLIATVITAAISLLVVLPVAVAT 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-MWASELWTKHLSHPQSLKILSETFL 141
                +  +L   +     +GIP+P  +S +P G    +E W  +L HP    + + T +
Sbjct: 95  TQAFAQAHDLREWLHTVQDNGIPLPDVVSRLPYGAAQITEWWQANLGHP----LHAATAM 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                +    F  +FG       L   FM++ LF   R G  +S  L       F     
Sbjct: 151 HGVNGEKFIAFGRQFGTKLAHVLLEFGFMLVTLFVILRAGHKLSGALLQGARRAFGRNGA 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           ++   +   +  T  G+ ++ +GEG +LG AY LAGVP    LG++TA+ AM+P  AP+ 
Sbjct: 211 ELIERMVAAVYGTVTGLVVVGLGEGALLGVAYALAGVPHAALLGLVTAVAAMLPFCAPVV 270

Query: 262 FTAVSIYLLIKGN 274
           F   +++L ++G 
Sbjct: 271 FCGAALWLFVQGG 283


>gi|257091790|ref|YP_003165431.1| hypothetical protein CAP2UW1_0142 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044314|gb|ACV33502.1| protein of unknown function UPF0118 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 375

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 81/336 (24%), Positives = 161/336 (47%), Gaps = 7/336 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE--SSTFLAVIATVSVMCLF 74
             I+++S + L  F   +L+A +    SWP+Y+ F ++          ++I T+++    
Sbjct: 28  ALIVILSAWILNSFLQAMLAACVTAIASWPLYTRFAARLPRCIGRNSSSLIFTLALTIFV 87

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
           + PL+F F   + E   L+S + +A++ GI VP+ L + P  G W +  W   L+ P +L
Sbjct: 88  LAPLMFAFGALLSEAHALLSAIAVADKKGIAVPQGLENAPLIGPWLAARWQSQLASPGAL 147

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
              ++          +  +A   G   + +   I F ++ LFF Y++G S++     +  
Sbjct: 148 LTWTQR----TDAAALVPWAQSLGQFTVRHAFIIFFTVLLLFFLYQEGESLAAGFRRVLR 203

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                +    + +  + +R++   M ++A+ +GL  G AY + GVP       +T ++A+
Sbjct: 204 RCLGEHADGFADLATRAVRASVNSMLVVALFDGLASGVAYAIVGVPHAAVWAAVTGLLAL 263

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +P    ++  A+++ L +             G   LF  DK +RP +    ++L F+   
Sbjct: 264 VPFLGYVAVGALALQLAMTVTTTPPLLALGLGCFVLFCGDKVVRPVVACNGVRLRFVWVL 323

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            G +GG   +GL+GL IGPV++ L   +W++ +  +
Sbjct: 324 MGCLGGFEVLGLIGLVIGPVVLTLARELWEQRVRDL 359


>gi|297539825|ref|YP_003675594.1| hypothetical protein M301_2662 [Methylotenera sp. 301]
 gi|297259172|gb|ADI31017.1| protein of unknown function UPF0118 [Methylotenera sp. 301]
          Length = 354

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 88/334 (26%), Positives = 160/334 (47%), Gaps = 6/334 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I ++   +  F AP+  A ++ + SWP+            T  A +AT  +     +PL
Sbjct: 21  LIALASMVVAPFLAPIAWAGVLAYASWPVAERIRRWCNNKDTLAAFLATALLALTLFLPL 80

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQSLKILS 137
           ++L +   LE+  L   +     +  PVP  L  +P  G W  +      ++P    ++ 
Sbjct: 81  IWLVWLAQLELGHLFPALQAFLANPPPVPETLRSLPWLGEWLMQQQAHFTANPNGASLVF 140

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
           + +L  +  D +   A   G         ++ +        RDG  I ++L  + E    
Sbjct: 141 KNWLAAHTAD-LSMLAGGLGKSLAKMIFVVVILFFFF----RDGTRIVRELRHVLERFIG 195

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
           A+            R+   G+ + A+ +G+V G  YW+AG+ S V  GV+T I+A+IP G
Sbjct: 196 AHVHDYLHAAGTTTRAVVYGILLTALVQGVVAGLGYWVAGLSSPVMFGVLTMILALIPFG 255

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P+++ A  + LL++G    A  +++WGA  +  +D  LRP  +     +PFL   FG++
Sbjct: 256 TPLAWGAAGLLLLLQGETGAAIGVWIWGAAIVSQLDNVLRPLFISSISPIPFLLVLFGVL 315

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           GG+   GL+GLFIGP++++++  +W+E    + E
Sbjct: 316 GGLLAFGLVGLFIGPIVLSVVWAVWREWTAHLDE 349


>gi|194334809|ref|YP_002016669.1| hypothetical protein Paes_2012 [Prosthecochloris aestuarii DSM 271]
 gi|194312627|gb|ACF47022.1| protein of unknown function UPF0118 [Prosthecochloris aestuarii DSM
           271]
          Length = 363

 Score =  185 bits (471), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 77/334 (23%), Positives = 136/334 (40%), Gaps = 6/334 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           I  +    +  F   +L A I    + P+   F    +   +  + +A VS+  + I PL
Sbjct: 18  ISAIFFSMIYDFLMVILIAAIFSSLALPVNRFFERLFKGKKSLSSALALVSISLIGIFPL 77

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
             L      +   +        +  +  P    D+   +   E    +      L +   
Sbjct: 78  FALMGIVAAQAVRISRSAGPWIEKRLEEPTAFHDLFLTLPFYETINAYSD----LILQRL 133

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             + +    F+    S F +  +         +  +FFF RDG  + QQ       L  +
Sbjct: 134 GEMVSKTGTFLFENISSFTLSTVHTLFLFFVFLYTMFFFLRDGRDMLQQALYYMP-LNQS 192

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-G 257
              ++      V R+T  G  +I I +G + G A+ +AG+ S V  G I  ++++IP  G
Sbjct: 193 DQSRMLDKFTSVTRATIRGTFVIGIIQGTLAGLAFQVAGIESAVFWGAIMTVLSVIPVVG 252

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
           + + +    +YL   G    AT L ++  I +  +D  LRP LVG   ++  L  FFG +
Sbjct: 253 SGLVWVPAVLYLYATGENVAATGLLIFCGILVSSIDNILRPVLVGRDTRMHELLIFFGTI 312

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           GG+   G+ G  +GP++ AL   +W+      KE
Sbjct: 313 GGIGLFGIAGFIVGPIIAALFITVWEIYGETFKE 346


>gi|189501154|ref|YP_001960624.1| hypothetical protein Cphamn1_2238 [Chlorobium phaeobacteroides BS1]
 gi|189496595|gb|ACE05143.1| protein of unknown function UPF0118 [Chlorobium phaeobacteroides
           BS1]
          Length = 379

 Score =  185 bits (471), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 76/327 (23%), Positives = 134/327 (40%), Gaps = 6/327 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +  F   +L A I    + P++  F S      +  + +  +++  + I PLL L    
Sbjct: 37  MIYDFLMVILIAAIFSGLAMPLFRWFESLFRGRRSISSAMTILTMALILIFPLLALLGIV 96

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             E  ++   V    +  +  P    DI   +  SE   ++              L  N 
Sbjct: 97  AAEAIKVSRSVGPWIEQRVEQPTAFDDIFSSLPYSETIIQYSDEILQRLGE----LVGNM 152

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
             F+    S F +  +     +      +FFF +DG  + + +      L      ++  
Sbjct: 153 STFLFENLSSFTLSTVHTLFMMFVFFYTMFFFLKDGRDMLESVLYYLP-LGERDQSRMLD 211

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTA 264
               V  +T  G  +I I +G + G A  +AG+ S +  G +  ++++IP  G+ + +  
Sbjct: 212 KFTSVTGATIRGTFVIGILQGTLAGLALKVAGIESAIFWGAVMTVLSIIPIIGSGLVWGP 271

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             +YL   G   +AT L L+  + +  VD  LRP LVG   K+  L  FFG  GG+   G
Sbjct: 272 AVLYLYATGEYVSATGLLLFCGLLVSSVDNILRPILVGRDTKMHELLIFFGTFGGISLFG 331

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKE 351
           + G  +GPV+ AL   +W+      K+
Sbjct: 332 ISGFIVGPVIAALFITVWEIYGETFKD 358


>gi|258542289|ref|YP_003187722.1| transporter [Acetobacter pasteurianus IFO 3283-01]
 gi|256633367|dbj|BAH99342.1| transporter [Acetobacter pasteurianus IFO 3283-01]
 gi|256636426|dbj|BAI02395.1| transporter [Acetobacter pasteurianus IFO 3283-03]
 gi|256639479|dbj|BAI05441.1| transporter [Acetobacter pasteurianus IFO 3283-07]
 gi|256642535|dbj|BAI08490.1| transporter [Acetobacter pasteurianus IFO 3283-22]
 gi|256645590|dbj|BAI11538.1| transporter [Acetobacter pasteurianus IFO 3283-26]
 gi|256648643|dbj|BAI14584.1| transporter [Acetobacter pasteurianus IFO 3283-32]
 gi|256651696|dbj|BAI17630.1| transporter [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654687|dbj|BAI20614.1| transporter [Acetobacter pasteurianus IFO 3283-12]
          Length = 363

 Score =  185 bits (471), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 77/352 (21%), Positives = 151/352 (42%), Gaps = 12/352 (3%)

Query: 7   NPQGIMRWMIMF-IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           + + IMR +++  I    +  L  F + +L A ++ +T+WP++     +        ++ 
Sbjct: 8   STERIMRLLLLGGITYGCVLVLAPFSSALLWAGVLAYTTWPLFQHLRRRMG--PNAASLT 65

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVL---ANQHGIPVPRWLSDIPG-GMWASE 121
            T+      ++PL FL    +        +++          P+P W++ +P  G   S 
Sbjct: 66  MTLLCAVGVVLPLAFLASACVSSGPRWARQIMTFVGTIHELPPLPHWVTSLPAFGPDISH 125

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            W +   +  S+      +        I +      M   +  L ++  +   FFF+  G
Sbjct: 126 HWERWSRNISSVGDELRPYAGE-----IIQSLLEVLMRMANGALHLVMALFIAFFFWLSG 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   + ++   +      +   IV   +R T  G+   AI +G++ G   WL GV   
Sbjct: 181 PMLWDTVQAVMVRIAGHQAGRHLHIVGSTVRGTVYGILGTAIIQGILTGLGLWLLGVGEA 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           V LGV+ A +A+ P GAP+ +   +++L    +      L L+G + +   D  +RP  +
Sbjct: 241 VILGVLAAFLAVFPIGAPLVWIPAALWLFGMHHPGKGILLLLYGVLIISGADHLIRPLFI 300

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               KLP+L T  G++GG+   G +G+F+GP+L+A+   +  E         
Sbjct: 301 ARGSKLPYLLTVLGVIGGLLAFGGVGIFLGPILLAIGFTLTTEFAADEAAQP 352


>gi|197285279|ref|YP_002151151.1| hypothetical protein PMI1420 [Proteus mirabilis HI4320]
 gi|227355709|ref|ZP_03840102.1| inner membrane protein [Proteus mirabilis ATCC 29906]
 gi|194682766|emb|CAR42995.1| putative membrane protein [Proteus mirabilis HI4320]
 gi|227164028|gb|EEI48925.1| inner membrane protein [Proteus mirabilis ATCC 29906]
          Length = 370

 Score =  185 bits (470), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 72/357 (20%), Positives = 140/357 (39%), Gaps = 7/357 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
            T +         I F I+ S + L  F    + A +I   +WP+      + +      
Sbjct: 7   HTDIPKILFTVLFISFFIIGSFWILNPFIVGFIWAGMIVVATWPLLIILEKRVKYR-WLS 65

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASE 121
            +I  + ++ +F++P++ L    +     L+      +    P   WL +IP  G    E
Sbjct: 66  TMIMMILILLIFVIPIILLISSVIDNSAPLIELAKSPSDIQPPQLLWLKEIPMVGNTLYE 125

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            W   L    +  +           ++    A   G   L   + ++F  +     +  G
Sbjct: 126 TWHSILVSGGNALMAKIQPYIGQAANWFFAQALNIGRFALHLVVMLLFSGL----LFLQG 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            ++   L      L          +    IR+  LG+ + A+ + ++ G    ++GVP  
Sbjct: 182 ENVVAWLRHFAVRLAGQRGDAAILLASMSIRAVALGVVLTALIQAVIGGIGLGISGVPYA 241

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             L V+  I  +   G         ++L   G+      + +WG I +  +D  LRPFL+
Sbjct: 242 TVLTVLMFICCLAQLGPLFVLVPSILWLFWTGDTTWGIVMIIWGGI-VATMDGVLRPFLI 300

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                LP +    G++GG+ T+G++GLFIGPV++A+   +    I  + +    ++ 
Sbjct: 301 KMGADLPMVLILTGVIGGILTLGMIGLFIGPVVLAVAHSLLNAWINEVPKPDPDLTE 357


>gi|329113453|ref|ZP_08242234.1| UPF0118 inner membrane protein YdiK [Acetobacter pomorum DM001]
 gi|326697278|gb|EGE48938.1| UPF0118 inner membrane protein YdiK [Acetobacter pomorum DM001]
          Length = 363

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 79/352 (22%), Positives = 151/352 (42%), Gaps = 12/352 (3%)

Query: 7   NPQGIMRWMIMF-IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           + + IMR +++  I    +  L  F + +L A ++ +T+WP++     +        ++ 
Sbjct: 8   STERIMRLLLLGGITYGCVLVLAPFSSALLWAGVLAYTTWPLFQHLRRRMG--PNAASLT 65

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVL---ANQHGIPVPRWLSDIPG-GMWASE 121
            TV      ++PL FL    +        +V+          P+P W++ +P  G   S 
Sbjct: 66  MTVLCAVGVVLPLAFLASACVSSGPRWARQVMAFVGTIHELPPLPHWITSLPAFGPDISH 125

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            W +   +  S+      +        I +      M   +  L ++  +   FFF+  G
Sbjct: 126 HWERWSRNISSVGDELRPYAGE-----IIQSLLEVLMRMANGALHLVMALFIAFFFWLSG 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   + ++   +      +   IV   +R T  G+   AI +G++ G   WL GV   
Sbjct: 181 PMLWDTVQAVMVRIAGHQAGRHLHIVGSTVRGTVYGILGTAIIQGILTGLGLWLLGVGEA 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           V LGV+ A +A+ P GAP+ +   +++L    +      L L+G + +   D  +RP  +
Sbjct: 241 VILGVLAAFLAVFPIGAPLVWIPAALWLFGMHHPGKGILLLLYGVLIISGADHLIRPLFI 300

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               KLP+L T  G++GG+   G +G+F+GP+L+A+   +  E         
Sbjct: 301 ARGSKLPYLLTVLGVIGGLLAFGGVGIFLGPILLAIGFTLTTEFAADEAAQP 352


>gi|323260092|gb|EGA43717.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
          Length = 337

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 66/328 (20%), Positives = 126/328 (38%), Gaps = 7/328 (2%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
                A  I   +WP+            +   ++ T+ ++ LF++P+  L    +     
Sbjct: 1   MGFAWAGTIVIATWPVLLKLQKILWGRRSLAVLVMTLLLVLLFVIPVALLVNSIVDGSGP 60

Query: 92  LVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           L+   V      +P   WL++IP  G      W   L    S  +            +  
Sbjct: 61  LI-HAVTGGDMTLPDLAWLNNIPLVGAKLYAGWHSLLDMGGSAIMAKVRPYIGTTTTWFV 119

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
             A+  G   +   L ++F  +     Y  G  ++  +      L          +  + 
Sbjct: 120 GQAAHIGRFMMHCALMLLFSAL----LYWRGEQVAMGIRHFACRLAAKRGDAAVLLAAQA 175

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  ++  G         I+L 
Sbjct: 176 IRAVALGVVVTALVQAVLGGVGLAISGVPYATLLTVVMILSCLVQLGPLPVLIPAIIWLY 235

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             G+    T L +W A  +  +D  +RP L+     LP L    G++GG+   G++GLFI
Sbjct: 236 WTGDTTWGTVLLVWSA-VVGTLDNVIRPVLIRMGADLPLLLILSGVIGGLIAFGMIGLFI 294

Query: 331 GPVLMALIAVIWKESIMAIKENKEKISS 358
           GPVL+A+   ++   +  +     +   
Sbjct: 295 GPVLLAVTWRLFSAWVHEVPAPTNEPEE 322


>gi|269103476|ref|ZP_06156173.1| predicted permease [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268163374|gb|EEZ41870.1| predicted permease [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 362

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 75/352 (21%), Positives = 150/352 (42%), Gaps = 15/352 (4%)

Query: 13  RWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
            WM++  ++++ Y     ++ +  P++ A+II     P++     K   S    ++++  
Sbjct: 11  HWMLVVALVIAGYASYRIIEPYLGPIIMAVIISLLCHPMHEKIRGKMPGSPNIASLLSCT 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKEL----VSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            +  + ++P+L +F   + +         + +       +    ++          +   
Sbjct: 71  LLTFIIMIPMLVVFSSIVHQGTTFSKESYTWLTDGGAKELFAHPYVQK--SFALIDKYSP 128

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                PQ +     +     G   +       G +  ++ +S I M+  LFF  RD   +
Sbjct: 129 FKSIDPQEVLQKIASIASQLGSTLLNVSTKLLGDVT-NFLMSFILMLFVLFFLLRDHDKM 187

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              + ++   L  +    +   V  V +S  LG  + A+ +G+  G A WL G P  +  
Sbjct: 188 VATVRNVLP-LSRSQEDALFSEVQTVAKSAVLGSFMTALAQGVAGGFAMWLCGFPG-LFW 245

Query: 245 GVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV-G 302
           G + A  + IP  G  + +   ++YLL+ G    A  L  WG I +  +D  LRP L+ G
Sbjct: 246 GSMMAFASFIPVVGTALIWVPATLYLLLLGQWEWALFLTGWGIIVVGSIDNVLRPLLMQG 305

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G   +  L  FF ++GG++  GL+GL  GP++  +  V++K   +  K+  E
Sbjct: 306 GDSNMNTLLIFFSILGGLQLFGLIGLIYGPIIFGVTLVLFKLYEIEFKDFLE 357


>gi|296115814|ref|ZP_06834440.1| hypothetical protein GXY_08485 [Gluconacetobacter hansenii ATCC
           23769]
 gi|295977791|gb|EFG84543.1| hypothetical protein GXY_08485 [Gluconacetobacter hansenii ATCC
           23769]
          Length = 352

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 84/353 (23%), Positives = 167/353 (47%), Gaps = 6/353 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M  T           +  +I+ SLY  + F    +  +I+  T++P+Y   + ++   + 
Sbjct: 1   MGNTSRVQYVATGGFVCLVIMASLYIEQSFLGAFVWGIILSITAFPLYQ-VLRRRGCGNM 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM-WA 119
             +++ +V +  L  VPL+ +    + ++  L      A+Q GIPVP+ ++D+PGG    
Sbjct: 60  VASLVISVGIFALLAVPLVAMVAKAVADLPSLYDWAKSASQTGIPVPKQVADLPGGSSKI 119

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           + LW K+LS P  L+    T+L +    F            ++   + +  +++++FF  
Sbjct: 120 APLWQKYLSDPNELR----TWLGSVSHTFATADGKNLTHRLMEVAETFMIAVLSVYFFLV 175

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
              S+   + ++G+             +   +R T  G+ ++ +GEG ++G  Y++AG P
Sbjct: 176 SAESLIGDIRAVGKKFLGRRATDAIDNIVGSVRGTVAGLVLVGMGEGGIIGIGYFMAGTP 235

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
                 ++TAI++++P   P+     +           A  + L G +  F  D  +RP 
Sbjct: 236 HPALFMLVTAIVSIVPFCGPVILALAAATTFAASGGGAALIVGLIGCVAYFFGDHFVRPK 295

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+ G  K+PFL     ++GG+   GLLGLFIGP ++A+   +W+ ++   + +
Sbjct: 296 LISGNTKIPFLAVLTAILGGLHACGLLGLFIGPAVIAVAFSLWRSAVADSRAD 348


>gi|307826374|ref|ZP_07656577.1| protein of unknown function UPF0118 [Methylobacter tundripaludum
           SV96]
 gi|307732582|gb|EFO03456.1| protein of unknown function UPF0118 [Methylobacter tundripaludum
           SV96]
          Length = 350

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 67/334 (20%), Positives = 133/334 (39%), Gaps = 5/334 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
               +K F      A+I+     P+Y       + S      +  + ++ +F++PLL + 
Sbjct: 21  FFLLIKDFLLACFWAIILAVVFDPVYQRIRQYFKNSEILPLFLTMMMIILVFVIPLLTII 80

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                E      K+       I    +  DI   +        H+      +I +     
Sbjct: 81  LMITEESTGYYQKIASGE---INPQVYFQDILALVLPKFYKLSHIQAISVEQISASAGNA 137

Query: 143 -TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            T  + +I +         L+  + +      LFF  RDG  + ++L SL   +      
Sbjct: 138 FTQAVKYIAQQLPALTQNLLNLIVQVALAFYILFFLLRDGQQLIRKLISLIP-IGDGIEI 196

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           ++      V R+T  G  I+A+ +G + G  +W  G+P+    G++  +++++P G+ + 
Sbjct: 197 ELFERFTSVARATVKGGLIVAVIQGSIGGFLFWFVGIPAAFLWGILMIVLSLLPIGSTLI 256

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +   +I L ++G    A  +   G + + ++D  LRP L+G   K+         +GG+ 
Sbjct: 257 WVPAAIILFLQGQTLKAAIVLAIGILVIGMIDNFLRPRLIGKDSKMSDYLVLVSTLGGLT 316

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
              L G  +GP++ AL    W       + +K K
Sbjct: 317 WFSLTGFVLGPIIAALFITCWDLMGQESQASKRK 350


>gi|146313035|ref|YP_001178109.1| hypothetical protein Ent638_3398 [Enterobacter sp. 638]
 gi|145319911|gb|ABP62058.1| protein of unknown function UPF0118 [Enterobacter sp. 638]
          Length = 360

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 72/355 (20%), Positives = 151/355 (42%), Gaps = 7/355 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVS-LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           ++     PQ +   +I+  +L S ++ L  F   ++ A +I   +WP+Y++   K     
Sbjct: 4   IKHPRDLPQTLFGILIILTLLSSAIWILHPFLLSIVWAGLIVIATWPLYTTVQRKLGGRR 63

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMW 118
                +  V +  +F++P++F         ++L+  ++  ++  +P   +L+ IP  G  
Sbjct: 64  KLAITVMMVFLTAIFLLPIIFSAGMLSTLFEDLLQWLMHLDKSHLPSLDFLAHIPIVGEH 123

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
               W   +         +     T  I  + +  S+FG +F++  +    M++A   FY
Sbjct: 124 LHRKWLALIHENAESIFDTLKPWITKVIVILAQGLSQFGALFVNGLM----MLLACLAFY 179

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
             G +I++ L      +  A       +    I++  +G+ + A+ + +  G    +  +
Sbjct: 180 LYGTTITRGLRQFAFRIAGARGDNAVLLAGTTIQAVAMGVVLTAVIQSIFAGVGLAVCHI 239

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           PS   L  I  ++ ++  G  I      I+L  +G  +N   L +W  +    +D  L+P
Sbjct: 240 PSSALLTGIIFVLCLMQLGPVIIMLPALIWLFYQGEHWNGAVLLVW-TVIAGSLDNILKP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L+        L    G++GG+ T G++GL IGPVL+A+   +    +       
Sbjct: 299 ILIKRGADTSLLLIMTGVIGGMLTWGMIGLMIGPVLLAVSWKLLSTWVSEAHYQP 353


>gi|37522328|ref|NP_925705.1| hypothetical protein glr2759 [Gloeobacter violaceus PCC 7421]
 gi|35213328|dbj|BAC90700.1| glr2759 [Gloeobacter violaceus PCC 7421]
          Length = 368

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 81/352 (23%), Positives = 152/352 (43%), Gaps = 14/352 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             Q  M  +   +  V+   L  F   +  A I+   SWP+Y       ++ S + A+  
Sbjct: 4   RQQWAMLVVAGVLAWVAYLVLGPFLPAIAWAAILALVSWPLYQKVYEILDKRSIYAALAM 63

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP--------VPRWLSDIPGGMW 118
           T+ V    I+P++ +      +  EL   V       +         + R ++ +P    
Sbjct: 64  TLLVSLSVILPVVLIAASLASDAVELYRTVQADGSMSLAALKESYAALGRTVARVPVVGG 123

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             + W + +   Q  + L       +G   I  + + FG       +++   I  LFF Y
Sbjct: 124 QLQNWLREVDLVQVQQWLR------SGAGRILTWLAGFGQAISGALVTLGLTIFTLFFLY 177

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
             G  + +Q     E L       +   +   +R+  LG+ +    +GL+ G   W+AG+
Sbjct: 178 LSGLDLVRQTREALEKLGGEPLVSLLDPLGATVRAVVLGLVLTGAAQGLLAGLGLWVAGI 237

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              + LGV+ A+++++    P+ +    I+L   G  + A  LFLWGA+ +  +D  L+P
Sbjct: 238 EIALILGVLAALLSILQIPTPVVWFPCVIWLAANGQTWQAVALFLWGALVVGTIDNFLKP 297

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             +     +P L  FFG++GG+   G +G+ +GPV +AL+ V+W+      +
Sbjct: 298 LFISQGTGIPILLVFFGVLGGLLAFGTIGIVVGPVSLALLLVLWRRWTAPPE 349


>gi|220921861|ref|YP_002497162.1| hypothetical protein Mnod_1869 [Methylobacterium nodulans ORS 2060]
 gi|219946467|gb|ACL56859.1| protein of unknown function UPF0118 [Methylobacterium nodulans ORS
           2060]
          Length = 363

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 96/354 (27%), Positives = 172/354 (48%), Gaps = 7/354 (1%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST- 60
           RET  +       M++ +  + L+ L GF   ++ A+I+    WP+Y+    +       
Sbjct: 12  RETERSHAVARAAMVLGLASIGLWTLHGFLPALVWAVILTIALWPLYARLTRRFPGGRHN 71

Query: 61  -FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM-W 118
                + T+++  + +VPL F+      E  +++       + G PVP  ++ +P G   
Sbjct: 72  LLWPSLFTLALALVILVPLAFVAVQAAREAHDVLQFWRQIEEQGWPVPEAVAHLPFGAAQ 131

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            S  W ++L HP     L     +++    +      FG       +   F ++ LFF +
Sbjct: 132 VSAWWQENLGHPAGTSDLLHRIERSS----LIGLGGSFGKQIAHRVVLFGFTLLTLFFLF 187

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           RDG ++++Q       LF +  ++++R +   +  T  G+ ++ +GEG +LG  Y  AGV
Sbjct: 188 RDGPAVAEQGLVACRRLFGSRGERVARQMAASVHGTVDGLVLVGLGEGFLLGLVYHFAGV 247

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  V LG  TA+ AMIP    + F   ++   + G++  A  + + G +  F+ D  +RP
Sbjct: 248 PHPVLLGAATALAAMIPFAVVVVFGLAAVLAAVNGSVAAAAVVVIAGMVVTFVADHFVRP 307

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            L+GG  +LPFL    G++GGV   GLLGLF+GP +MA + ++W++      E 
Sbjct: 308 ALIGGATRLPFLWVLLGILGGVENFGLLGLFLGPAVMAALVLLWRDFTAGEGET 361


>gi|108757825|ref|YP_632271.1| hypothetical protein MXAN_4093 [Myxococcus xanthus DK 1622]
 gi|108461705|gb|ABF86890.1| putative membrane protein [Myxococcus xanthus DK 1622]
          Length = 385

 Score =  183 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 68/350 (19%), Positives = 139/350 (39%), Gaps = 10/350 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M ++      +   +    +++    L  F  PVL    +     P+  S   K     +
Sbjct: 1   MADSRRWSNFVFAGLFALALILFSRILLPFLMPVLLGGFLVVLFMPVQDSLCQKLGGRKS 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A ++TV+V  L + PL  + +    E+ + V +  +  +       +L+ +P G+   
Sbjct: 61  LSAGVSTVTVFVLILAPLALVGWMVAREVFQFVGQAQVLLEQQHLRHPFLASLPLGL--- 117

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
               ++L             L                    D  +++  M +A+++F+ D
Sbjct: 118 ---ERYLRLGVDSAETERALLAAMTGG--ASLLRDVAAAGTDLVINLFLMSVAMYYFFLD 172

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +  ++  L   L   Y++  +R    V  +   G T+ A+ +G V      +AGVP 
Sbjct: 173 GRRLVAEVMRLIP-LDRRYFEAFAREFTDVAYAIIYGNTVTALIQGAVGFVGLLIAGVPH 231

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               G    ++A++P GG  + +  + + L+    +     L  WGA  +  +D  +RP 
Sbjct: 232 AGVWGAAMVLVALVPVGGTALVWGPIGVVLIAANQVSEGVFLLAWGAFLVGSIDNVIRPR 291

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           L G  + L  L  F  + GG+   G++GL +GP++ ++   + +      
Sbjct: 292 LCGSRMALHPLLVFLSMFGGLAVFGMMGLLVGPLIASIFMAMVRIYRRDF 341


>gi|27375768|ref|NP_767297.1| hypothetical protein bll0657 [Bradyrhizobium japonicum USDA 110]
 gi|27348906|dbj|BAC45922.1| bll0657 [Bradyrhizobium japonicum USDA 110]
          Length = 367

 Score =  183 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 72/353 (20%), Positives = 151/353 (42%), Gaps = 3/353 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +       ++  I +   + L  F   +L A ++     P+Y   +    E    
Sbjct: 14  RHVRTSEDRSFLVLLAAISVAFGWLLWPFSGALLWATLLAIIFAPLYRLCLETFPEWRNL 73

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A+   + V+ + ++P+  +    + +  EL  +V           + L       WA+ 
Sbjct: 74  AALSTVLVVVVMVLIPVAVVIASLVEQGGELYQRVQTGEISFAHPLQQLKSALP-DWAAS 132

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +  +      S      + L       +   A   G + +++  S++ M+  LFFF RDG
Sbjct: 133 VSDRLAGIDLSALKERLSSLVVPAGQQLAGHAINIGQLTVEFVASLLVMLYLLFFFLRDG 192

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             ++ ++      L  ++   I       +R T  G+ ++A+ +G + G  +WL G+ + 
Sbjct: 193 DELNLRIRDALP-LRRSHTAAILDAFTLSVRGTIKGIILVALIQGALGGLIFWLLGLTAP 251

Query: 242 VALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +  G + A+++++P  G+ + +  V +YLL+ G +     L ++G   + + D  LRP L
Sbjct: 252 LLAGALMALLSLLPVLGSALVWVPVGLYLLVAGAVTKGMILLVFGTFVIGLADNFLRPVL 311

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           VG  I++P        +GG+ T G  G  IGP++ A+    W   + + ++ +
Sbjct: 312 VGQSIRMPSYVVLLATLGGLATFGANGFVIGPLVAAMFLTAWHIFVGSKEQQE 364


>gi|296445779|ref|ZP_06887732.1| protein of unknown function UPF0118 [Methylosinus trichosporium
           OB3b]
 gi|296256759|gb|EFH03833.1| protein of unknown function UPF0118 [Methylosinus trichosporium
           OB3b]
          Length = 349

 Score =  183 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 79/324 (24%), Positives = 153/324 (47%), Gaps = 8/324 (2%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
             F  P+  A I+ + ++P+Y   +       +  A  AT+ ++ + +VP+ FL      
Sbjct: 24  SPFLTPLAWAAILAYATYPVYRRILRASGNRPSLAATFATLLLVVVLVVPVAFLLVRLQS 83

Query: 88  EMKELVSKVVLAN-QHGIPVPRWLSDIPG-GMWASELWTKHLSHPQSLKILSETFLKTNG 145
           ++ E   ++        I +P  ++  P  G    ++     + P+  +   + +++   
Sbjct: 84  DLAEAYRELSSQFADEPIVLPDAVARFPVVGPALDDMLNTIWNDPERRREQVKEWIEP-- 141

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
             ++   A   GMI       I    IALFFFYRDG  + ++L +    +  A      R
Sbjct: 142 --WMSGLARTLGMIGRSLA-QIALTAIALFFFYRDGALVVEELRAGLRKVVGASADNYVR 198

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTA 264
            +    ++   G+ + A+ +GL+ G  Y + GV + + LG +TA+ A++P  G    +  
Sbjct: 199 AIGATTQAVVSGVIVSALFQGLIAGVGYAVVGVGTPILLGALTAVAALVPFIGTWAVWAP 258

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           V +YLL+ G       L  WG + +  VD  ++P L+     +P +   FG++GG+   G
Sbjct: 259 VGVYLLVVGQTGAGVALLAWGGLVVSWVDNIIKPLLISSAADIPLVIVLFGVLGGLLAFG 318

Query: 325 LLGLFIGPVLMALIAVIWKESIMA 348
            +GLF+GP+++A++  IW+E +  
Sbjct: 319 FVGLFLGPLILAVLLSIWREWLAG 342


>gi|312797187|ref|YP_004030109.1| hypothetical protein RBRH_01983 [Burkholderia rhizoxinica HKI 454]
 gi|312168962|emb|CBW75965.1| Hypothetical membrane spanning protein [Burkholderia rhizoxinica
           HKI 454]
          Length = 363

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 65/339 (19%), Positives = 131/339 (38%), Gaps = 7/339 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           SLY +  F   ++ A +I   +WP+      +          +   +++ +  +PL    
Sbjct: 27  SLYIMSPFLPALIWATMIVVATWPLMRGAQERLGGRRGRATALMLAALLIVIALPLYGAV 86

Query: 83  YYGMLEMKELVSKV-VLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETF 140
                    ++     L +    P P WL ++P  G   +  W +         +     
Sbjct: 87  VAIAAHADTILQYARALPDYRPAPPPAWLHEVPLIGERITSAWQRLTHAGVDGLLEFVAP 146

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
               G  ++   A+  G + +   L++I   +     Y  G + +  +      L     
Sbjct: 147 YADTGAKWMVSHATAVGGVLIHLLLTLILCGV----LYMHGETAAGAVRRFAYRLADERG 202

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
               R+  + IR+  LG+ + A  +  + G   + AG+P    +  IT I+ +   G  +
Sbjct: 203 TAAVRLAGQAIRAVALGIVVTAAVQSALAGLGLFAAGIPGAGMVCAITLILCLAQIGPLL 262

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
                +I+L  +        + +W A  +  +D  +RP L+   + LP L    G+VGG+
Sbjct: 263 PLIGAAIWLFYQDATIAGVAMLVW-AFVVSSLDNVIRPPLIQRGVDLPMLLVLAGVVGGL 321

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              G++GLFIGPV++A+   +    I    +   + +  
Sbjct: 322 IAFGIVGLFIGPVILAVTYKLMHAWIDEQAKAVSRPARQ 360


>gi|325273487|ref|ZP_08139726.1| hypothetical protein G1E_10548 [Pseudomonas sp. TJI-51]
 gi|324101378|gb|EGB98985.1| hypothetical protein G1E_10548 [Pseudomonas sp. TJI-51]
          Length = 290

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 67/274 (24%), Positives = 121/274 (44%), Gaps = 7/274 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + +  F + +L   I+ F SWP+            T  A + T++ + +  +PL++L + 
Sbjct: 22  WVMAPFISALLWGAILAFASWPLMRLLTRVLGGRETLAASLLTMAWILIVALPLVWLGFN 81

Query: 85  GMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLK 142
               +++  + V      G+P  P WL  +P  G      W        +L    +  L 
Sbjct: 82  LADHIRDATAFVRDVQVDGLPDAPAWLGGLPFVGERLVSWWQSLDQQGAALLASVKPHLG 141

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
             G   + R A + G   L+  LS++F    +FFFYRDG  +S  +  L   L       
Sbjct: 142 QVGNWLLARSA-QIGSGVLELTLSLVF----VFFFYRDGPRLSAFVLRLLHRLMGDRAAY 196

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
              +V   ++    G+   A  + L+    + +AGVP  + LG++T ++++IP G P+++
Sbjct: 197 YLELVAATVQRVVNGVIGTAAAQALLALIGFLIAGVPGAIVLGLVTFMLSLIPMGPPLAW 256

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
              + +L+ KG    A  L +WG   +  VD  L
Sbjct: 257 IPATAWLVWKGEYGMAVFLGIWGTFVISGVDNVL 290


>gi|84393813|ref|ZP_00992559.1| putative permease [Vibrio splendidus 12B01]
 gi|84375553|gb|EAP92454.1| putative permease [Vibrio splendidus 12B01]
          Length = 361

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 73/330 (22%), Positives = 138/330 (41%), Gaps = 10/330 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           ++ +   ++ A II    +PI+     K       +++++ V +  + ++PLL +F   +
Sbjct: 29  IEPYVNSIVMAFIISLLMFPIHEWLEKKLPNKENIVSLLSCVILTFIIVIPLLAVFAAIV 88

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH----PQSLKILSETFLK 142
            +             HG    + L   P  + A      +L      PQ++      F  
Sbjct: 89  QQGSLFSQNTYQWVTHGG--IQTLFAHPLVVKALSFVNNYLPFDNIEPQAIAQKVGEFAT 146

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           + G   +   A   G    ++ +    M+  LFF  RD   I   +  +   L  +   K
Sbjct: 147 SFGSKLVGISAKILGDAT-NFLMDFFLMLFVLFFLLRDHDKIISVVRHILP-LSRSQEDK 204

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPIS 261
           +   + +V +S  +G  + AI +G   G   W+AG P  +  G +    + IP  G  + 
Sbjct: 205 LLTEIEQVSKSAVMGSFLTAIAQGFAGGLGMWIAGFPG-LFWGTMMGFASFIPVVGTALI 263

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +   + YL + G+   A  L ++    +  +D  LRP L+ G   +  L  FF L+GG++
Sbjct: 264 WIPAATYLFLTGDTTWAIFLTVYCVAIVGSIDNLLRPLLMQGSAGMNTLMIFFSLLGGIQ 323

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             GL+GL  GP++ A+  V++       K+
Sbjct: 324 LFGLIGLIYGPLIFAITIVLFNIYDEEFKD 353


>gi|209695990|ref|YP_002263920.1| membrane protein [Aliivibrio salmonicida LFI1238]
 gi|208009943|emb|CAQ80257.1| membrane protein [Aliivibrio salmonicida LFI1238]
          Length = 361

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 78/349 (22%), Positives = 139/349 (39%), Gaps = 10/349 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           ++         ++ +  P++ A I+     P+++    K  +S    A+++  ++  +  
Sbjct: 18  LLVASYACFLLIEPYLNPIILAFIMSLLFAPLHNKISEKLPKSPNSAAILSCTALTFIIA 77

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS----HPQ 131
           +PL F+F   + +              G    + L   P          KHL      P 
Sbjct: 78  IPLFFVFVAIVQQGATFSKDAYHWITEGG--IQTLFQHPIVSQILAFINKHLPFDAIDPN 135

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            +           G   +   A   G    +  ++   M+  LFF  RD   I      +
Sbjct: 136 EITQKVAQLASQVGTKVVGVSAQILGDAT-NVLVNFFLMLFVLFFLLRDQDKIISAFRHV 194

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L  +   ++   + +V +S  LG  + AI +GL  G A WLAG P  +  G +    
Sbjct: 195 LP-LSRSQEDRLLDEIEEVSKSAILGSFLTAIAQGLAGGFAMWLAGFPG-LFWGTMMGFA 252

Query: 252 AMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + IP  G  + +   +IYLL+      A  L +WG + +  +D  +RP L+ G   +  L
Sbjct: 253 SFIPVVGTALIWIPATIYLLLTNQWEWAIFLTVWGVLVVGSIDNIVRPLLMQGNSGMNTL 312

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             FF L+GG+   GL+GL  GP++ AL  V++       K   ++   N
Sbjct: 313 LIFFSLLGGIHLYGLIGLIYGPLIFALTFVLFNMYETEFKGFLDQQDKN 361


>gi|148979051|ref|ZP_01815296.1| putative permease [Vibrionales bacterium SWAT-3]
 gi|145962024|gb|EDK27312.1| putative permease [Vibrionales bacterium SWAT-3]
          Length = 361

 Score =  182 bits (463), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 72/330 (21%), Positives = 141/330 (42%), Gaps = 10/330 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           ++ +   ++ A II    +PI+     K    +  +++++ V +  + ++PLL +F   +
Sbjct: 29  IEPYVNSIVMAFIISLLMFPIHEWLEKKIPNKANLVSLLSCVILTFIIVIPLLAVFAAIV 88

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH----PQSLKILSETFLK 142
            +             HG    + L + P  + A      +L      P+++      F  
Sbjct: 89  QQGSLFSQNTYQWVTHGG--IQTLFEHPIVVKALSFVNNYLPFDNIEPKAIAQKVGEFAT 146

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           + G   +   A   G    ++ +    M+  LFF  RD   I   +  +   L  +   K
Sbjct: 147 SFGSKLVGISAKILGDAT-NFLMDFFLMLFVLFFLLRDHDKIISVVRHILP-LSRSQEDK 204

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPIS 261
           +   + +V +S  +G  + AI +G+  G   W+AG P  +  G +    + IP  G  + 
Sbjct: 205 LLAEIEQVSKSAVMGSFLTAIAQGIAGGFGMWIAGFPG-LFWGTMMGFASFIPVVGTALI 263

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +   + YL + G+   A  L ++    +  +D  LRP L+ G   +  L  FF L+GG++
Sbjct: 264 WIPAAAYLFLTGDTTWAIFLTVYCVAIVGSIDNLLRPLLMQGSAGMNTLMIFFSLLGGIQ 323

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             GL+GL  GP++ A+  V++       K+
Sbjct: 324 LFGLIGLIYGPLIFAITIVLFNIYDEEFKD 353


>gi|307821972|ref|ZP_07652204.1| protein of unknown function UPF0118 [Methylobacter tundripaludum
           SV96]
 gi|307736538|gb|EFO07383.1| protein of unknown function UPF0118 [Methylobacter tundripaludum
           SV96]
          Length = 381

 Score =  182 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 104/332 (31%), Positives = 173/332 (52%), Gaps = 7/332 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISK--KEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + L  F A ++ A+++  T+WPIY   ++        T+ A++ T+ +  L +VPL +  
Sbjct: 19  WVLHSFLALLVWAVVLAITTWPIYQRLLASNEIHGKVTWGALLLTLLIGALILVPLGYGL 78

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFL 141
              + E + L   +  A   GIP P WL  IP  G WA + W   L +P           
Sbjct: 79  SRLLNEAQSLGQILTEAQNVGIPPPVWLETIPMIGNWAKDTWMNALGNPVVANESLHWLG 138

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             + I +   FAS+     L      +  ++ LFF Y+ G  +SQ + +    LF     
Sbjct: 139 TGSAITYTKDFASQ----LLHRFFGFLLTLLVLFFVYQHGTGLSQYVLATNRKLFGETGV 194

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           + +      +R+T  G+ ++ +GEGL+LG  Y LAG+     LG +T + AMIP  A + 
Sbjct: 195 RYAIHATAAVRATVNGLVLVGLGEGLLLGVGYALAGLSHPAMLGALTGVFAMIPFAAKLI 254

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F A S+ L+ +G++   + LF++G + + + D  +RP L+GG +KLPF+ T  G+ GG+ 
Sbjct: 255 FGACSLVLIAEGHMAAGSSLFVFGVVVILLADNYVRPRLIGGAVKLPFIWTLLGIFGGLE 314

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             GLLGLF+GP LMA++  IW++ +  + + K
Sbjct: 315 NFGLLGLFLGPTLMAVLISIWRDWVADMDKPK 346


>gi|283851814|ref|ZP_06369091.1| protein of unknown function UPF0118 [Desulfovibrio sp. FW1012B]
 gi|283572730|gb|EFC20713.1| protein of unknown function UPF0118 [Desulfovibrio sp. FW1012B]
          Length = 404

 Score =  182 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 69/337 (20%), Positives = 135/337 (40%), Gaps = 8/337 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           +   L+ F   ++  +++     P+            T  A++ T  +    I+P+ F  
Sbjct: 24  AYIVLRPFVDILIIGVVLAALFKPVQRRLDPLCGHRPTLSALLTTGLIFTCLIIPIFFFL 83

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL- 141
              + +  + V+ +    Q  +     L              +HL      K+  +  L 
Sbjct: 84  GSLLAQGVQSVNALQH--QLSVTDFNTLLSRDALAPYVGWVQEHLPFLDVKKLAFQADLL 141

Query: 142 --KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
               N    +    ++         ++ + +I  LFF  RDG ++  Q   L   L    
Sbjct: 142 DISKNAGQLLLDSGTKIVGNVFVLTMNFVILIFVLFFLIRDGDAMLAQARYLLP-LSTDQ 200

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GA 258
             +I R +  V +S  LG  +IA+ +GL  G   ++ G+ +    G +    ++IP  G 
Sbjct: 201 ENRIFRQLDDVAKSVILGAFVIALAQGLAGGIGLFIVGI-NPFFWGFMMGFASLIPVVGT 259

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            I +  VSIYL++ G+      L +WGA+ +  +D  +RP L+    K+     F  ++G
Sbjct: 260 AIIWLPVSIYLMLTGDWQWGLFLAVWGAVVISSIDSVIRPLLMQNRSKMSTFWVFLAIIG 319

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G++  G LG+  GP+++    V+        +   E+
Sbjct: 320 GIKFFGALGILYGPLILGFAMVMLTLYAEDYRHVLEE 356


>gi|90413138|ref|ZP_01221134.1| putative permease [Photobacterium profundum 3TCK]
 gi|90325829|gb|EAS42281.1| putative permease [Photobacterium profundum 3TCK]
          Length = 361

 Score =  182 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 75/356 (21%), Positives = 153/356 (42%), Gaps = 14/356 (3%)

Query: 13  RWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
            WM++  + +++Y     ++ +  P++ A II    +P++    SK        A+++ +
Sbjct: 11  HWMLIVALGIAVYASYRLIEPYIGPIVMAFIISLLYYPLHIRIESKIPSKPNSAAILSCI 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKEL----VSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            +  + ++PLL +F   + +         +         +    ++  +   +   +   
Sbjct: 71  LLTFIIVIPLLIVFSSIVHQGTTFSKDSYTWFSSGGAKELLAHPYVQKVL--LLIDKWSP 128

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                 Q++     +     G   +   A   G    ++ +S + M+  LFF  RD   +
Sbjct: 129 FESIDTQAILQKIASAASKFGAQLLNMSAKILGDAT-NFIISFMLMLFVLFFLLRDHAKM 187

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              +  +   L  +    +   V +V +S  LG  + A+ +G   G A WLAG P  +  
Sbjct: 188 VNAVRHVLP-LSRSQEDALLTEVEQVAKSAVLGSFLTALAQGFAGGFAMWLAGFPG-LFW 245

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           G + A  + IP  G  + +   ++YLL+      A  L  WG I +  +D  LRP L+ G
Sbjct: 246 GSMMAFASFIPVFGTALIWLPAALYLLLINQWEWALFLSGWGIIVVGSIDNILRPLLMQG 305

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              +  L  FF ++GG+   GL+GL  GP++ A+  V++K   +  K+  ++ + +
Sbjct: 306 NSGMNTLLIFFSILGGLHLFGLIGLIYGPIIFAVTLVLFKLYEVEFKDFLDQQNQS 361


>gi|194335494|ref|YP_002017288.1| protein of unknown function UPF0118 [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194307971|gb|ACF42671.1| protein of unknown function UPF0118 [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 363

 Score =  182 bits (462), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 73/357 (20%), Positives = 146/357 (40%), Gaps = 6/357 (1%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           ++   Q I+  +++ I +  +  ++ F   ++ A +    + P+++ F    +   +  A
Sbjct: 3   SIKTNQLILLVLLLVISVTFVAMIRYFLMAIVLAALFSALAMPVFNRFERWFKGRKSLSA 62

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +  ++++ +  +P   L      +   +    V   Q  I  P         + +   +
Sbjct: 63  SMTMLTLLLIVFLPFAALLGIVAKQAIRISRIAVPWVQQQILEPGAFDQ---QLRSLSFY 119

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            + L +   +      F  + G        S F    +         +  +FFF RDG  
Sbjct: 120 PELLLYRTEIFQKVGEFASSTGTMLFNTI-STFTYSAVSDLFLFFLFLYTMFFFIRDGKQ 178

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +     S    L      ++      V R+T  G  ++   +G + G A   AG+ S + 
Sbjct: 179 LLAHFLSYLP-LRQTDQNRLLDKFISVTRATIKGTMVVGAVQGSLAGLALHFAGIDSALF 237

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G I ++ +++P  G+ + +    IYL   G    A  + L+ +I +  +D  LRP L+G
Sbjct: 238 WGTIMSLFSILPVLGSALVWVPAVIYLAATGQYPQAIGVLLFCSIVVGQIDNILRPMLIG 297

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              ++P L  FFG +GG+   G+ G  +GP++ AL   IW+      KE   +I S+
Sbjct: 298 RDTQMPELLIFFGTLGGISLFGVFGFILGPIVAALFMTIWEMYGETFKEYLSEIKSD 354


>gi|325527793|gb|EGD05065.1| hypothetical protein B1M_08312 [Burkholderia sp. TJI49]
          Length = 314

 Score =  182 bits (462), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 81/302 (26%), Positives = 144/302 (47%), Gaps = 8/302 (2%)

Query: 6   LNPQGIMRWMI-MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK--EESSTFL 62
              Q I R ++   ++L++L+ ++ F   +  A +I    WP+   F S +      T +
Sbjct: 16  PRAQRIARAVLYTALLLLALWVIRAFIPAIAWACVIAIAMWPLLKRFESHRLVRNRPTIV 75

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM-WASE 121
           A + TV++  L ++P+       + +  ++   +     +GIP+P  +S +P G    ++
Sbjct: 76  ATVITVAISLLVVLPVALALTQAIAQAHDMRVWLRTIQDNGIPLPDVVSRLPYGSTQIAD 135

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            W  +L HP      +      NG  FI  F   FG       L   FM++ LF   R G
Sbjct: 136 WWQANLGHP---LHAASAMHGVNGEKFIA-FGRLFGTKLAHALLEFGFMLVTLFVILRAG 191

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +S  L       F A   ++   +   +  T  G+ ++ +GEG +LG AY LAGVP  
Sbjct: 192 HKLSGALLQGARRAFGADGAQLIERMVGAVNGTVTGLVVVGLGEGALLGIAYALAGVPHA 251

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             LG++TA+ AM+P  AP+ F   +++L ++G    A  + + G + +F+ +  +RP L+
Sbjct: 252 ALLGLVTAVAAMLPFCAPVVFCGAALWLFVQGATTWAVVVAVTGFVVVFVAEHFVRPVLI 311

Query: 302 GG 303
           GG
Sbjct: 312 GG 313


>gi|162147751|ref|YP_001602212.1| putative inner membrane protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209542376|ref|YP_002274605.1| hypothetical protein Gdia_0192 [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786328|emb|CAP55910.1| putative inner membrane protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209530053|gb|ACI49990.1| protein of unknown function UPF0118 [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 358

 Score =  182 bits (462), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 78/346 (22%), Positives = 157/346 (45%), Gaps = 11/346 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  + +M  ++  +       L  F + +L A I+ F +WP++     +        A+ 
Sbjct: 1   MAERIMMGLLLGGVAFGCGAILYPFMSALLWAAILTFATWPLFIRLRRRTG--PVTAAIG 58

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMK---ELVSKVVLANQHGIPVPRWLSDIPG-GMWASE 121
            TV    +  +PL  +    + ++    E +++ +    H    P WL+ IP  G   ++
Sbjct: 59  MTVLSALVVALPLAVVVSTSIADLPGTFEGLAETLARLIHLPAPPPWLARIPHFGPDLAK 118

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +WT+  +     + +   +  +     +        M      + +   +   FFF+  G
Sbjct: 119 IWTQWATDLGHAERMLLPYTGSIAQSMLAGL-----MQVASGLVHLGMALFIAFFFWLGG 173

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            S+     ++   +  +Y  +I  I+ + IR T  G+   AI +G++ G  + L G+P  
Sbjct: 174 DSLGGTFSAVIRRIAGSYADRILSIIGRTIRGTVYGILGTAIVQGVLTGLGFALTGLPEP 233

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           V  G+ITA +A++P GAP+ +   ++ L++  +      L ++G + +   D  +RP  +
Sbjct: 234 VLFGLITACVAVLPIGAPLIWIPGALALILTHHPGWGIFLVVYGVLIISGADHIIRPMFI 293

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
               +LP+L T  G++GGV T G LG+F+GPVL+ +   +  E   
Sbjct: 294 SRGAQLPYLLTVLGVLGGVWTFGGLGIFLGPVLLGVGYTLTAEFAA 339


>gi|86148147|ref|ZP_01066446.1| putative permease [Vibrio sp. MED222]
 gi|218710464|ref|YP_002418085.1| putative permease [Vibrio splendidus LGP32]
 gi|85834064|gb|EAQ52223.1| putative permease [Vibrio sp. MED222]
 gi|218323483|emb|CAV19660.1| putative permease [Vibrio splendidus LGP32]
          Length = 361

 Score =  181 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 73/330 (22%), Positives = 138/330 (41%), Gaps = 10/330 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           ++ +   ++ A II    +PI+     K       +++++ V +  + ++PLL +F   +
Sbjct: 29  IEPYVNSIVMAFIISLLMFPIHEWLEKKIPNKENVVSLLSCVILTFIIVIPLLAVFAAIV 88

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH----PQSLKILSETFLK 142
            +             HG    + L   P  + A      +L      PQ++      F  
Sbjct: 89  QQGSLFSQNTYQWVTHGG--IQTLFAHPLVVKALSFVNNYLPFDNIEPQAIAQKVGEFAT 146

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           + G   +   A   G    ++ +    M+  LFF  RD   I   +  +   L  +   K
Sbjct: 147 SFGSKLVGISAKILGDAT-NFLMDFFLMLFVLFFLLRDHDKIISVVRHILP-LSRSQEDK 204

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPIS 261
           +   + +V +S  +G  + AI +G   G   W+AG P  +  G +    + IP  G  + 
Sbjct: 205 LLTEIEQVSKSAVMGSFLTAIAQGFAGGLGMWIAGFPG-LFWGTMMGFASFIPVVGTALI 263

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +   + YL + G+   A  L ++    +  +D  LRP L+ G   +  L  FF L+GG++
Sbjct: 264 WIPAATYLFLTGDTTWAIFLTVYCVAIVGSIDNLLRPLLMQGSAGMNTLMIFFSLLGGIQ 323

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             GL+GL  GP++ A+  V++       K+
Sbjct: 324 LFGLIGLIYGPLIFAITIVLFNIYDEEFKD 353


>gi|59712743|ref|YP_205519.1| permease [Vibrio fischeri ES114]
 gi|59480844|gb|AAW86631.1| predicted permease [Vibrio fischeri ES114]
          Length = 361

 Score =  181 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 73/356 (20%), Positives = 148/356 (41%), Gaps = 14/356 (3%)

Query: 13  RWMIMFIILV----SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
            W+++  +L         ++ +  P++ A I+     P+++    +   S    A+++ +
Sbjct: 11  HWVLIAALLAAGYACFLLIEPYLNPIILAFIMSLLFAPLHNKISDRLPNSPNSAAILSCM 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMK----ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++  +  +PL F+F   + +      +    V+      +    +++ +    + ++   
Sbjct: 71  ALTFIIAIPLFFVFIAIVQQGATFSKDAYHWVIDGGIQTLFQHPFVAKVL--SFINKYLP 128

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                P  +           G   +   A   G +  +  ++   M+  LFF  RD   I
Sbjct: 129 FDAIDPAEVTQKVAQLASQIGTRIVGMSAQIVGDVT-NVLMNFFLMLFVLFFLLRDQDKI 187

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
                 +   L  +   ++   + +V +S  LG  + AI +G+  G A WLAG P  +  
Sbjct: 188 ISAFRHVLP-LSRSQEDRLLDEIEQVSKSAVLGSFLTAIAQGIAGGFAMWLAGFPG-LFW 245

Query: 245 GVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           G +    + IP  G  + +   +IYLL+      A  L  WG + +  +D  +RP L+ G
Sbjct: 246 GTMMGFASFIPVVGTALIWVPATIYLLLTNQWEWAIFLTAWGVLVVGSIDNIVRPLLMQG 305

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              +  L  FF L+GG++  GL+GL  GP++ AL  V++       K   ++   N
Sbjct: 306 NSGMNTLLIFFSLLGGIQLYGLIGLIYGPIIFALTLVLFNMYETEFKSFLDQQDKN 361


>gi|197335578|ref|YP_002156935.1| hypothetical membrane spanning protein [Vibrio fischeri MJ11]
 gi|197317068|gb|ACH66515.1| hypothetical membrane spanning protein [Vibrio fischeri MJ11]
          Length = 361

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 73/356 (20%), Positives = 147/356 (41%), Gaps = 14/356 (3%)

Query: 13  RWMIMFIILV----SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
            W+++  +L         ++ +  P++ A I+     P+++    +   S    A+++ +
Sbjct: 11  HWVLIAALLAAGYACFLLIEPYLNPIILAFIMSLLFAPLHNKISDRLPNSPNSAAILSCM 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMK----ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++  +  +PL F+F   + +      +    V+      +    +++      + ++   
Sbjct: 71  ALTFIIAIPLFFVFIAIVQQGATFSKDAYHWVIDGGIQTLFQHPFVAK--ALSFINKYLP 128

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                P  +           G   +   A   G +  +  ++   M+  LFF  RD   I
Sbjct: 129 FDAIDPAEVTQKVAQLASQIGTRIVGMSAQIVGDVT-NVLMNFFLMLFVLFFLLRDQDKI 187

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
                 +   L  +   ++   + +V +S  LG  + AI +G+  G A WLAG P  +  
Sbjct: 188 ISAFRHVLP-LSRSQEDRLLDEIEQVSKSAVLGSFLTAIAQGIAGGFAMWLAGFPG-LFW 245

Query: 245 GVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           G +    + IP  G  + +   +IYLL+      A  L  WG + +  +D  +RP L+ G
Sbjct: 246 GTMMGFASFIPVVGTALIWVPATIYLLLTNQWEWAIFLTAWGVLVVGSIDNIVRPLLMQG 305

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              +  L  FF L+GG++  GL+GL  GP++ AL  V++       K   ++   N
Sbjct: 306 NSGMNTLLIFFSLLGGIQLYGLIGLIYGPIIFALTLVLFNMYETEFKTFLDQQDKN 361


>gi|328474213|gb|EGF45018.1| putative permease [Vibrio parahaemolyticus 10329]
          Length = 361

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 77/347 (22%), Positives = 144/347 (41%), Gaps = 10/347 (2%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++   ++         ++ +   ++ A II    +P++  F  K  +     +++  V 
Sbjct: 12  RVLMIALLAAAFACYLLVEPYINSIVMAFIISLLMFPVHEWFERKMPKHKNSASLLTCVV 71

Query: 70  VMCLFIVPLLFLFYYGMLEMKEL----VSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           +  + ++PLLF+F   + +           V       I    W+  I G    +E    
Sbjct: 72  LTFIIVIPLLFVFAAIVQQGSVFSQNTYKWVTNGGIQDIFQHPWV--IKGLSIVNEYLPF 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
               P+++      F  T G + +   A   G    ++ +    M+  LFF  RD   I 
Sbjct: 130 DKIEPKAIAEKIGQFATTFGSNLVAISAKILGDAT-NFLMDFFLMLFVLFFLLRDHDKII 188

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +  +   L  +   +I   + +V +S  +G  + AI +GL  G   WLAG P  +  G
Sbjct: 189 SAIRHIMP-LSRSQEDRILTEIEQVSKSAVMGSFLTAIAQGLAGGIGMWLAGFPG-LFWG 246

Query: 246 VITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            +    + IP  G  + +   + YL + G++  A  L  W  + +  +D  LRP L+ G 
Sbjct: 247 TMMGFASFIPVVGTALIWIPAAAYLFLTGDMTWAIFLTAWSVVIVGSIDNLLRPLLMQGS 306

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             +  L  FF L+GG+   GL+GL  GP++ A+  V++       K+
Sbjct: 307 AGMNTLMIFFSLLGGLHLFGLIGLIYGPLIFAVTMVLFNIYEEEFKD 353


>gi|54307733|ref|YP_128753.1| putative permease [Photobacterium profundum SS9]
 gi|46912156|emb|CAG18951.1| putative permease [Photobacterium profundum SS9]
          Length = 361

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 75/356 (21%), Positives = 154/356 (43%), Gaps = 14/356 (3%)

Query: 13  RWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
            WM++  + +++Y     ++ +  P++ A II    +P+++   SK        A+++ +
Sbjct: 11  HWMLIVALGIAVYASYRLIEPYIGPIVMAFIISLLYYPLHARIESKISNKPNSAAILSCI 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKEL----VSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            +  + ++PLL +F   + +         +         +    ++  +   +   +   
Sbjct: 71  LLTFIIVIPLLIVFSSIVHQGTTFSKDSYTWFSSGGAKELLAHPYVQKVL--LLIEKWSP 128

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                 Q++     +     G   +   A   G    ++ +S + M+  LFF  RD   +
Sbjct: 129 FEGIDTQAILQKIASAASKFGAQLLNISAKILGDAT-NFVISFMLMLFVLFFLLRDHTKM 187

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              +  +   L  +    +   V +V +S  LG  + A+ +G   G A WLAG P  +  
Sbjct: 188 VNAVRHVLP-LSRSQEDVLLTEVEQVAKSAVLGSFLTALAQGFAGGFAMWLAGFPG-LFW 245

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           G + A  + IP  G  + +   ++YLL+      A  L  WG I +  +D  LRP L+ G
Sbjct: 246 GSMMAFASFIPVFGTALIWLPATLYLLLINQWEWALFLSGWGIIVVGSIDNILRPLLMQG 305

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              +  L  FF ++GG+   GL+GL  GP++ A+  V++K   +  K+  ++ + +
Sbjct: 306 NSGMNTLLIFFSILGGLHLFGLIGLIYGPIIFAVTLVLFKLYEVEFKDFLDQQNQS 361


>gi|28899250|ref|NP_798855.1| putative permease [Vibrio parahaemolyticus RIMD 2210633]
 gi|153838395|ref|ZP_01991062.1| putative permease [Vibrio parahaemolyticus AQ3810]
 gi|260362174|ref|ZP_05775164.1| putative permease [Vibrio parahaemolyticus K5030]
 gi|260879054|ref|ZP_05891409.1| putative permease [Vibrio parahaemolyticus AN-5034]
 gi|260895929|ref|ZP_05904425.1| putative permease [Vibrio parahaemolyticus Peru-466]
 gi|260903440|ref|ZP_05911835.1| putative permease [Vibrio parahaemolyticus AQ4037]
 gi|28807474|dbj|BAC60739.1| putative permease [Vibrio parahaemolyticus RIMD 2210633]
 gi|149748202|gb|EDM59061.1| putative permease [Vibrio parahaemolyticus AQ3810]
 gi|308085368|gb|EFO35063.1| putative permease [Vibrio parahaemolyticus Peru-466]
 gi|308089577|gb|EFO39272.1| putative permease [Vibrio parahaemolyticus AN-5034]
 gi|308106571|gb|EFO44111.1| putative permease [Vibrio parahaemolyticus AQ4037]
 gi|308111062|gb|EFO48602.1| putative permease [Vibrio parahaemolyticus K5030]
          Length = 361

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 77/347 (22%), Positives = 144/347 (41%), Gaps = 10/347 (2%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++   ++         ++ +   ++ A II    +P++  F  K  +     +++  V 
Sbjct: 12  RVLMIALLAAAFACYLLVEPYINSIVMAFIISLLMFPVHEWFERKMPKHKNSASLLTCVV 71

Query: 70  VMCLFIVPLLFLFYYGMLEMKEL----VSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           +  + ++PLLF+F   + +           V       I    W+  I G    +E    
Sbjct: 72  LTFIIVIPLLFVFAAIVQQGSVFSQNTYKWVTNGGIQDIFQHPWV--IKGLSIVNEYLPF 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
               P+++      F  T G + +   A   G    ++ +    M+  LFF  RD   I 
Sbjct: 130 DKIEPKAIAEKIGQFATTFGSNLVAISAKILGDAT-NFLMDFFLMLFVLFFLLRDHDKII 188

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +  +   L  +   +I   + +V +S  +G  + AI +GL  G   WLAG P  +  G
Sbjct: 189 SAIRHILP-LSRSQEDRILTEIEQVSKSAVMGSFLTAIAQGLAGGIGMWLAGFPG-LFWG 246

Query: 246 VITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            +    + IP  G  + +   + YL + G++  A  L  W  + +  +D  LRP L+ G 
Sbjct: 247 TMMGFASFIPVVGTALIWIPAAAYLFLTGDMTWAIFLTAWSVVIVGSIDNLLRPLLMQGS 306

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             +  L  FF L+GG+   GL+GL  GP++ A+  V++       K+
Sbjct: 307 AGMNTLMIFFSLLGGLHLFGLIGLIYGPLIFAVTMVLFNIYEEEFKD 353


>gi|94971052|ref|YP_593100.1| hypothetical protein Acid345_4026 [Candidatus Koribacter versatilis
           Ellin345]
 gi|94553102|gb|ABF43026.1| protein of unknown function UPF0118 [Candidatus Koribacter
           versatilis Ellin345]
          Length = 360

 Score =  179 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 68/331 (20%), Positives = 137/331 (41%), Gaps = 5/331 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +  F  PV  A++I     P+Y   + + +      + +  +  + L  +P  FL    
Sbjct: 25  IVFPFIKPVAFAIVIAVVFNPLYQRLLKRTK-RPGTASFLTIIVFITLLAIPASFLVVTA 83

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             +  ++  +V         V   +  +     A+    ++L  P S             
Sbjct: 84  TRQAMDVGHRVSETTTAHGGVAPTIERVSAKPLAT--LGRYLRIPPSELKQRIEDKLNVW 141

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              +   +            +    +I +FF +RDG  + + +D +   +     ++I  
Sbjct: 142 AGRMMSQSGALLANLFSLLANSFIALITVFFLFRDGERVIEGMDRVLP-ITKEQLQRILN 200

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTA 264
            +   I +   GM  +   +G +         V S + LG++ A+ ++IP  G  + +  
Sbjct: 201 GISNSIVANVYGMAAVGAAQGFLTALGLAFCSVSSSILLGLVAAMCSLIPIVGTGLVWVP 260

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            + YL+I G++     L  WGA  +  +D  +RP ++ G ++   L   F L+GGV+  G
Sbjct: 261 AAGYLMITGHVGKGIFLLAWGAFVVSSIDNVIRPMVIQGRVQAHPLLILFALLGGVQAFG 320

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L+GLF GP+L+++I V+ +  +  I+E   K
Sbjct: 321 LIGLFAGPILLSVITVLLQIMLEEIREKDAK 351


>gi|170733033|ref|YP_001764980.1| hypothetical protein Bcenmc03_1686 [Burkholderia cenocepacia MC0-3]
 gi|169816275|gb|ACA90858.1| protein of unknown function UPF0118 [Burkholderia cenocepacia
           MC0-3]
          Length = 390

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 75/333 (22%), Positives = 145/333 (43%), Gaps = 7/333 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           +  +I  SLY L+ F   ++ A  I   +WP+      +         ++  +++M + +
Sbjct: 34  LSLLICGSLYILRPFLLALVWAATIVVATWPLLHEVQRRLRCRRGPAVIVMLLALMVVIV 93

Query: 76  VPLLFLFYYGMLEMKELVSKVV-LANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
           +P+           +E+++ +  L N    P P WL+ +P  G  A+  W          
Sbjct: 94  LPIYGAVSTLAAHAEEIMTLLKGLPNYTLPPPPGWLAKLPLAGTHATREWQTLSDAGPGG 153

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            + +     +    ++   AS  G++ L   L++I   I     +  G ++   +  + +
Sbjct: 154 VLATLQPYASRLASWLLVRASAIGVLVLHLLLTVIICGI----LFAKGEAVGLTVTRVAQ 209

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            + PA    + R+V   IR+  LG+ + A+ +  + G   W A VP    L  I  I  +
Sbjct: 210 CVAPANGAAMVRLVEHAIRAVALGVMVTALAQSALGGLGLWGASVPYAGVLTAILFIFCL 269

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
              G  +   A   +L +      A  LF W  + +  +D +LRP L+   I LP +   
Sbjct: 270 AQLGPLLPLLACVTWLFVHDAKLAAILLFGWS-LGVTALDNSLRPILIRRSIALPMVLIL 328

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            G++GG+   G++GLFIGPV++A+   + +  +
Sbjct: 329 AGVLGGLIAFGMIGLFIGPVMLAVTYALMEAWL 361


>gi|224825906|ref|ZP_03699010.1| protein of unknown function UPF0118 [Lutiella nitroferrum 2002]
 gi|224602130|gb|EEG08309.1| protein of unknown function UPF0118 [Lutiella nitroferrum 2002]
          Length = 360

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 74/347 (21%), Positives = 145/347 (41%), Gaps = 7/347 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            ++  ++   L  +  F   +  A+II  ++WP+Y              A++  + +   
Sbjct: 18  AIVALLVWACLQVILPFLGALTWAVIIAISAWPLYQRLTQCLRGRGNLAALLVVLLLGLA 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVV-LANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQ 131
             VPL  +       +  L      LAN    P P WL  IP  G   ++ W    +   
Sbjct: 78  LAVPLGLMVLTLTDTLPHLNGIAHGLANFTLPPPPAWLGKIPLTGEALTQYWVTAQTDLP 137

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            L    + ++    +  + R     G +     L I+  II       +G ++ +  + +
Sbjct: 138 GLLARLKPWINQGALWLLGR-----GAMLGVSLLEIVMAIIVAGLLLANGEALWRIAERV 192

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L  A   ++ ++V + IR    G+   A+ + ++      +AGVP  +ALG +  ++
Sbjct: 193 INKLGGASASELPQVVARTIRGVTTGVVGTALAQTILCVIGLLIAGVPGALALGFLCFVI 252

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           A+      + +   + ++   G       L LWG + +  +D  L+P L+    KLP   
Sbjct: 253 AVAQLPTLLVWLPAAGWVFYTGATGMGVFLLLWGFLLVNTIDNVLKPLLISQGAKLPLSL 312

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            F G++GG+   G++GLFIGP L+A+   +++  +   +E + K   
Sbjct: 313 IFLGVIGGLLAWGIIGLFIGPTLLAIGFTLFQFWLNNDEEAEAKPEH 359


>gi|116747741|ref|YP_844428.1| hypothetical protein Sfum_0292 [Syntrophobacter fumaroxidans MPOB]
 gi|116696805|gb|ABK15993.1| protein of unknown function UPF0118 [Syntrophobacter fumaroxidans
           MPOB]
          Length = 391

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 66/354 (18%), Positives = 143/354 (40%), Gaps = 12/354 (3%)

Query: 13  RWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           R  ++ ++  SLY     L  F   ++ +++I    +P+ +  + K     T  A+    
Sbjct: 19  RPFLLVVLFYSLYLTYLILHPFLDTLIMSIVISSLFYPLQTWLVKKYRGRQTLAALTIVF 78

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  +  +P+ F     + +  + ++++    + G    + L+  P  M   +     LS
Sbjct: 79  IITFVIAIPIFFFASTLIAQGVQTINQINDWLRAGN--IQKLAQDPRVMELMDWVQTRLS 136

Query: 129 HPQSLKILSET---FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                K+   +    L  N   F+   A+               ++   F+  RDG ++ 
Sbjct: 137 FLDLKKLDVSSNIMALSKNFGQFVLSRAATILGNVASLVTHFFILVFISFYLVRDGAAML 196

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                    L      ++   +  V RS  +G  + A+ +GL+ G    L G+P  +  G
Sbjct: 197 DAARGFSP-LRKDQEDRLLGGIRVVARSVLMGAFMTALCQGLIGGIGVALIGLPG-LFWG 254

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            +    + IP  G  + +  ++ YL++ G   +A  L +W  + +  +D  +RP+L+ G 
Sbjct: 255 TVMGFASFIPIVGTALVWVPMAAYLVLLGTWKSALFLAIWCIVLVGSIDNFVRPYLMRGQ 314

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             L     F  ++G V+  GL G+  GP++++   ++        +E+  +  S
Sbjct: 315 SNLSPFYIFLSIIGAVQYFGLTGILYGPLIVSFAMIMLYLYGAEYREDLAESKS 368


>gi|254283806|ref|ZP_04958774.1| transporter, PerM family [gamma proteobacterium NOR51-B]
 gi|219680009|gb|EED36358.1| transporter, PerM family [gamma proteobacterium NOR51-B]
          Length = 373

 Score =  178 bits (453), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 67/347 (19%), Positives = 147/347 (42%), Gaps = 3/347 (0%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  +++        FF  +L A+I+  T +P++   + K +  +   + +  ++++ + 
Sbjct: 24  LIALVVVACARIFAPFFGIMLWAVILAVTLFPLHQKLVPKFDGRAGRASTLMVLAILLIL 83

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
            VP++ L    +    +++S +        PV   +  IP  G     LW          
Sbjct: 84  GVPMVTLGISAVDHTTDVLSNMKSGEFEVPPVNPAVGKIPIVGENLIALWESASEDFAGT 143

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
               +  +       +    S  G + L    S+I   + + + +    ++ + L +L  
Sbjct: 144 LRDHKDQVSHYASVLLNSATSMLGAVLLSMG-SMIIAGVMMAYGHAGAAAMERVLHALVG 202

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  +++ R+    +RS  +G+  +A+ + L+LG  + LAG+P+   L      + +
Sbjct: 203 DAGNNRGQQVLRLSTATVRSVAVGVIGVALIQALLLGVGFLLAGIPAAGLLTFAVFFLGI 262

Query: 254 IPGGAPISFTAVSIYLLIKGN-IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +   A +    +  YL   G+    A  +     I     D  L+P L+G  +  P    
Sbjct: 263 LQLPALLITLPIIAYLWGVGDGSTLANSIASVYFIVAGTADGFLKPMLLGRGVDAPMPVI 322

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             G +GG+ +MG+LGLF+G V++A+   I+   +  + + +E ++S 
Sbjct: 323 LLGALGGMVSMGMLGLFVGAVVLAVGYQIFMAWVDFVCDGREPLTSQ 369


>gi|85860942|ref|YP_463144.1| permease [Syntrophus aciditrophicus SB]
 gi|85724033|gb|ABC78976.1| predicted permease [Syntrophus aciditrophicus SB]
          Length = 350

 Score =  178 bits (453), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 84/350 (24%), Positives = 149/350 (42%), Gaps = 7/350 (2%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E           ++  +    LY +K FF P+  A+II     P+Y+  I +   S   L
Sbjct: 2   EISKTRHLAFVLLLGLVGFGFLYLMKPFFYPLFWAIIISSIVHPLYARLILRWP-SPNLL 60

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           + +  V V+ + I+P +F+    + +   + + +   + H   + R L ++ G + +   
Sbjct: 61  SAVLLVLVLLILILPTIFIGSLLVSQSMSMYNTLSSDSSH---IARNLQELLGWISSHPY 117

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             K               L++   ++I    S      L        M+ ALFFF RDG 
Sbjct: 118 IQKLDIDQNFWMEKLSEMLRSIA-NYIFTRLSSLTQNTLAAVAQFAIMLYALFFFIRDGE 176

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + Q    L   L     + +        +ST     II   +G +   A+W+AG+   V
Sbjct: 177 KLLQSAMRLLP-LGNQRERLLFDRFINTAKSTLKVTLIIGGLQGTLGALAFWIAGIEGSV 235

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             GVI  + A+IPG G  I +    I LLI G+++    + L+G + + +VD  LRP L+
Sbjct: 236 LWGVIMIVTAIIPGIGCSIVWAPAGIILLISGHLWEGIMILLFGGLVISLVDNLLRPILL 295

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
              +++  L  F   +GG+   G  G  +GP++ +L+  I +      +E
Sbjct: 296 ERDVQMHPLLIFLSTLGGIVLFGFSGFVLGPIIASLMQSICQMYEQLYRE 345


>gi|89900931|ref|YP_523402.1| hypothetical protein Rfer_2147 [Rhodoferax ferrireducens T118]
 gi|89345668|gb|ABD69871.1| protein of unknown function UPF0118 [Rhodoferax ferrireducens T118]
          Length = 357

 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 85/335 (25%), Positives = 157/335 (46%), Gaps = 4/335 (1%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
              ++ F A +  A I+ + +WP++   ++      T+ A+  T+ +  +  + LL+   
Sbjct: 27  FVVMQPFVAAIAWAAILSYVAWPLHLKMLAWLGGRRTWAALAMTLVLTLVLGLSLLWAGL 86

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
               E    V +     + G+ +P  +  I   +W      + LS     +      L  
Sbjct: 87  LLRSEGAAAVREAAALLESGVRLPEAILSI---VWLGPWLQERLSALSGDRAAWGAPLSD 143

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
               +        G + L+  L + F ++  FF + DG  + +QL  +   L        
Sbjct: 144 LADQWGGHAMRMVGDLGLN-ALRLFFALLTSFFLFLDGDQMLEQLRGVLYGLLGNRVHAY 202

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
            + V    R+   G+ + A+ +GL+ G  YW  GV +    G  TA++A+IP GAP  + 
Sbjct: 203 FKAVGDTTRAVVYGLLLAALAQGLLAGLGYWAVGVRAPAFWGAATAVVALIPFGAPAIWG 262

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
           ++  +LL+KG I     L LWGA+ +  +D  +RP ++ G  K+PFL   FG++GG+   
Sbjct: 263 SIGAWLLLKGQISAGVGLLLWGALAVSWIDNLVRPLVISGVAKIPFLLVLFGVLGGLVAF 322

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           GL+GLF+GPV++A++  +W+E      + +E   +
Sbjct: 323 GLIGLFVGPVILAILLALWREWAADNVQVREPPPA 357


>gi|269961961|ref|ZP_06176316.1| putative lipoprotein [Vibrio harveyi 1DA3]
 gi|269833284|gb|EEZ87388.1| putative lipoprotein [Vibrio harveyi 1DA3]
          Length = 409

 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 78/330 (23%), Positives = 141/330 (42%), Gaps = 10/330 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           ++ +   ++ A II    +PI+  F SK       +++++ V +  + ++PLLF+F   +
Sbjct: 77  VEPYVNSIVMAFIISLLMFPIHEWFESKMPNHKNLVSLLSCVVLTFIIVIPLLFVFAAIV 136

Query: 87  LEMKEL----VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
            +           V       I    W+  + G    +E        PQ++      F  
Sbjct: 137 QQGSVFSQNTYKWVTNGGIQDIFQHPWV--VKGLALVNEYLPFDKIEPQAIAEKIGQFAT 194

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           + G + +   A   G    ++ +    M+  LFF  RD   I   +  +   L  +   K
Sbjct: 195 SFGSNLVAISAKILGDAT-NFLMDFFLMLFVLFFLLRDHDKIISAMRHILP-LSRSQEDK 252

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPIS 261
           I   + +V +S  +G  + AI +G   G   WLAG P  +  G +    + IP  G  + 
Sbjct: 253 ILTEIEQVSKSAVMGSFLTAIAQGFAGGIGMWLAGFPG-LFWGTMMGFASFIPVVGTALI 311

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +   + YL + G+   A  L +W  + +  +D  LRP L+ G   +  L  FF L+GG+ 
Sbjct: 312 WIPAAAYLFLTGDTTWAIFLTVWSVVVVGSIDNLLRPLLMQGSAGMNTLMIFFSLLGGLH 371

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             GL+GL  GP++ A+  V++       K+
Sbjct: 372 LFGLIGLIYGPLIFAVTMVLFNIYEEEFKD 401


>gi|85375175|ref|YP_459237.1| hypothetical protein ELI_11740 [Erythrobacter litoralis HTCC2594]
 gi|84788258|gb|ABC64440.1| hypothetical protein ELI_11740 [Erythrobacter litoralis HTCC2594]
          Length = 360

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 69/342 (20%), Positives = 143/342 (41%), Gaps = 7/342 (2%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           + +  +  +  F  P+L + +      P+Y   +      +   A+   + +    ++P+
Sbjct: 23  VTIGLVLVIWPFVMPILWSALAAILFQPLYQRILGNLNGKANQAAIATLLIIFFAVLLPM 82

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           +++    + +   +V            +   + D       + L  +       L+  ++
Sbjct: 83  IWIGSAIVRQAANVVIAFQEGRIDVATLVGQIFDALPSNLRNMLDAQGWGDFADLQARTQ 142

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             L T     I + A   G   L Y L+    +   +F  RDG  I Q +   G  L   
Sbjct: 143 ELL-TQSAGLIAQQALVIGGGALGYVLAFGVGLYITYFLLRDGKGIGQAVME-GVPLQKD 200

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-G 257
             ++++     ++R+T  G  ++ I +G +    +W+ G+PS +  G++ A+ +++P  G
Sbjct: 201 VAERLADKFLNIVRATIKGSVVVGIVQGALGALTFWIVGLPSVLLFGLVMAVFSLLPAIG 260

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
             I +   +I+L   G I+    + + G   + + D  LRP LVG    +P        +
Sbjct: 261 PAIVWVPAAIWLFATGAIWQGIVVVVSGVAVIGMADNLLRPILVGRDTGIPDWIILVTTL 320

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           GG+ TMGL G+ +GP+L  L    W      ++E+ E + +N
Sbjct: 321 GGIATMGLSGIVLGPMLAGLFLAGWTI----LREHNEAVDAN 358


>gi|293605499|ref|ZP_06687881.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292816227|gb|EFF75326.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 354

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 67/340 (19%), Positives = 140/340 (41%), Gaps = 7/340 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           ++ SLY L+ F   ++ A  I   +WP+      +         V+  + ++ + ++PL 
Sbjct: 1   MVGSLYVLQPFLPGLIWATTIVVATWPVLLVVQQRCGGRRWAATVVMLLILLVVIVLPLY 60

Query: 80  FLFYYGMLEMKELVSKVV-LANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQSLKILS 137
            +          ++  V  L +   +  P W+  +P  G   ++ W           +  
Sbjct: 61  QVISTLAEHSGAIMDAVKRLPDYTLLAPPGWIRSVPVAGPKLAQEWQTLSDAGAGGLLAR 120

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
                T    ++   A+  G+  +   ++I+   I     Y  G + ++ +      L  
Sbjct: 121 LEPYLTMAARWLLSHAAIVGVFVMHMLITIVISGI----LYSQGDAAAEFVKRFSNRLAG 176

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                  R+    +R+  LG+ + A+ +  + G   W+AGVP+   L  +  ++ +   G
Sbjct: 177 ERGVAAVRLAGAAVRAVALGIVVTAVVQSALGGVGLWIAGVPAAGILTALMVMLCLAQLG 236

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
             +      I+L        A  L +W A+ + ++D  LRP L+   + L  L    G++
Sbjct: 237 PFLPMLGGVIWLFQNDMRLAAILLLVW-ALIVAMLDNLLRPMLIKRGVNLSLLLILSGVL 295

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           GG+   G++GLFIGPV++A+ + + K  I  +      ++
Sbjct: 296 GGMFAFGIVGLFIGPVILAVTSTLLKAWIDEVPPPASTVA 335


>gi|42523150|ref|NP_968530.1| putative permease [Bdellovibrio bacteriovorus HD100]
 gi|39575355|emb|CAE79523.1| putative permease [Bdellovibrio bacteriovorus HD100]
          Length = 371

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 77/355 (21%), Positives = 144/355 (40%), Gaps = 8/355 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILV-SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M  T    + ++  + M ++   SL+ L  F   ++ A +I   +W        +     
Sbjct: 1   MAPTTDLTKTLLSVLFMGLLAAISLWVLLPFLPAMIWAAMIFIATWSTLLKLQHRFNNKR 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV-LANQHGIPVPRWLSDIPG-GM 117
               +   + +  L I+PL    +  +     +VS +  LAN    P P WL D P  G 
Sbjct: 61  FPAVLTMALLMTALVIIPLTAALFSLISNRHVIVSGLQDLANTQLPPAPDWLEDAPLLGP 120

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
             +  W +  +      I           ++I        M+ +   L+II   I    F
Sbjct: 121 RIAARWNELAATAPQDLIERAKPYIHQAFEWIVASVGSITMLVVHCILTIIIASI----F 176

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
           Y +G  I+Q   +L   L     ++  ++  + +R+  +G+   A+ +  + G    LAG
Sbjct: 177 YSNGEKIAQACRTLTRRLAGTRGEEALQLAAQSVRAVAMGIVGTALIQTALGGLGAGLAG 236

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           VP    L  +  I  ++  G  +       +L  +      T L  W A+ + ++D  +R
Sbjct: 237 VPHAGLLTAVILIFCVVQLGPLLPLLGAVAWLYSQEQNTAGTILLGW-AVAVGLMDGFVR 295

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           P L+     LP +    G++GG+ + G++GLFIGPV++A+   +    +    E 
Sbjct: 296 PILIKRGADLPAVLITVGVLGGMISFGIVGLFIGPVVLAVTLRLLSAWMTDNSEP 350


>gi|323136904|ref|ZP_08071984.1| protein of unknown function UPF0118 [Methylocystis sp. ATCC 49242]
 gi|322397665|gb|EFY00187.1| protein of unknown function UPF0118 [Methylocystis sp. ATCC 49242]
          Length = 386

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 66/350 (18%), Positives = 140/350 (40%), Gaps = 7/350 (2%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I  ++I F+   +   ++ F A ++ ++++     P++              A + T++
Sbjct: 26  SIRLFVIGFLAYWTFIIIQPFAAMIVWSVVLAVAFDPVFEKVSGWLGGRPILAAALMTIA 85

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLS 128
            + L I P+ ++    +  +K +++     +    P P  + D P  G W    W    +
Sbjct: 86  GLVLIIGPVTWMGVGVIDPLKGVLAGFENGDLSVPPPPEAVKDWPLIGDWLFSYWELAST 145

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +           LK  G +++   A   G+  L + LS+        F    G  +   +
Sbjct: 146 NIHGALAQILPQLKPVG-EYLLAGARNAGLGTLKFLLSVALAG----FLLASGPQLLVGI 200

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +L   + P    K   +    I +   G+  +++ + ++ G    LAGVP    L +  
Sbjct: 201 RALARRIDPTNGDKFVNLAGDTINAVSRGVMGLSLMQAVIGGLGMSLAGVPGASLLTLAI 260

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++ ++  G  +    V  +         A  L +     +  +D  L+PFL+   +  P
Sbjct: 261 LVLGIVQIGPLLIVAPVIFWAWTHMTTGPALALTI-CMATVNYMDNVLKPFLLAHGLSTP 319

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
               F G++GGV   G+ GLF+GPV++A++  + K  I    +     ++
Sbjct: 320 MGVIFIGVIGGVLAHGVAGLFVGPVVLAVVWELGKAWIADDLDETRNDAA 369


>gi|237809884|ref|YP_002894324.1| hypothetical protein Tola_3150 [Tolumonas auensis DSM 9187]
 gi|237502145|gb|ACQ94738.1| protein of unknown function UPF0118 [Tolumonas auensis DSM 9187]
          Length = 356

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 74/350 (21%), Positives = 150/350 (42%), Gaps = 6/350 (1%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
               I   +++ I+  +   +  F    L A+I+   +W  ++   ++        A++ 
Sbjct: 9   TQTLIALLLLVSIVGAAFIVIAPFLVATLWAIILVSATWDQFAWLSARFGGRDGVAAMLV 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI--PVPRWLSDIPGGMWASELWT 124
              +M   +VPL+F       ++  L   +    + G+   +P+WL D+P      +   
Sbjct: 69  VTILMLFIMVPLVFASVEFAQQLTVLARDLQHQIESGVWPALPQWLLDVPYAGEWLQAEW 128

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L       +     L T     +   A  FG   L   +S++   +     Y  G +I
Sbjct: 129 LGLQQLDMQVLNQLKGLVTPLAKIMLSMAGSFGAGMLMLLISLLIAGV----LYAHGETI 184

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + + +    + P    ++  +    IR    G    AI +G      Y LAG+P  ++L
Sbjct: 185 HRWVLAFSHKVAPKEGIRLLHVAHTTIRGVVNGFIGAAIAQGAFAWFGYALAGIPHALSL 244

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           G+ T+++++IPGG  +       +L  +G++  A  + +W    +  +D  ++  ++G  
Sbjct: 245 GLATSLISVIPGGPMLLSIPAIGWLYQQGSVGWAIFVAVWILFAVGSIDNVVKSLVIGRS 304

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             LP +   FG+ GG  + GLLG+F+GP+L+AL+  + K  + A +   +
Sbjct: 305 SPLPIVLILFGVAGGAISFGLLGVFLGPILLALVYALLKNWVNADEAADQ 354


>gi|153835384|ref|ZP_01988051.1| putative permease [Vibrio harveyi HY01]
 gi|156975685|ref|YP_001446592.1| hypothetical protein VIBHAR_03420 [Vibrio harveyi ATCC BAA-1116]
 gi|148868086|gb|EDL67255.1| putative permease [Vibrio harveyi HY01]
 gi|156527279|gb|ABU72365.1| hypothetical protein VIBHAR_03420 [Vibrio harveyi ATCC BAA-1116]
          Length = 361

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 77/330 (23%), Positives = 140/330 (42%), Gaps = 10/330 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           ++ +   ++ A II    +PI+  F  K       +++++ V +  + ++PLLF+F   +
Sbjct: 29  VEPYINSIVMAFIISLLMFPIHEWFERKLPNHKNLVSLLSCVVLTFIIVIPLLFVFAAIV 88

Query: 87  LEMKEL----VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
            +           V       I    W+  + G    +E        PQ++      F  
Sbjct: 89  QQGSVFSQNTYKWVSNGGIQDIFQHPWV--VKGLALVNEYLPFDKIEPQAIAEKIGQFAT 146

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           + G + +   A   G    ++ +    M+  LFF  RD   I   +  +   L  +   K
Sbjct: 147 SFGSNLVAISAKILGDAT-NFLMDFFLMLFVLFFLLRDHDKIISAMRHILP-LSRSQEDK 204

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPIS 261
           I   + +V +S  +G  + AI +G   G   WLAG P  +  G +    + IP  G  + 
Sbjct: 205 ILTEIEQVSKSAVMGSFLTAIAQGFAGGIGMWLAGFPG-LFWGTMMGFASFIPVVGTALI 263

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +   + YL + G+   A  L +W  + +  +D  LRP L+ G   +  L  FF L+GG+ 
Sbjct: 264 WIPAAAYLFLTGDTTWAIFLTVWSVLVVGSIDNLLRPLLMQGSAGMNTLMIFFSLLGGLH 323

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             GL+GL  GP++ A+  V++       K+
Sbjct: 324 LFGLIGLIYGPLIFAVTMVLFNIYEEEFKD 353


>gi|239906620|ref|YP_002953361.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
 gi|239796486|dbj|BAH75475.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
          Length = 370

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 75/361 (20%), Positives = 146/361 (40%), Gaps = 11/361 (3%)

Query: 1   MRETMLNPQGIMRWMIMF-IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M +       +   +I+   + ++   L  F   ++  +++     P+            
Sbjct: 1   MNQARKPIYSVFLLLILAGALSLAAIVLAPFVNILIIGVVLAALFRPVQRRVERLCGPRP 60

Query: 60  TFLAVIATVSVMCLFIVPLLF----LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
           T  A++ T  +    I+P+ F    L   G+  +  L +++   + + +     +S  P 
Sbjct: 61  TLAALLTTGLIFTCIIIPIFFFLGSLLAQGVQSVNALQAQLAATDFNKLFSHEAIS--PY 118

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
             W  E          +L+       KT G   I       G +F+   ++ + ++  LF
Sbjct: 119 MDWVQEHLPFLDLKKLALQADLIDISKTAGQMLIDSGTKIIGNVFV-LTMNFVILMFVLF 177

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F  RDG  + Q+L  L   L      +I R +  V +S  LG   IA+ +GL  G   ++
Sbjct: 178 FLIRDGERMMQRLRYLLP-LTTDQENRIFRQLDDVAKSVILGAFFIALAQGLAGGIGLFI 236

Query: 236 AGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
            G+      G +    ++IP  G  I +  V+IYL++ G+      L  WGA+ +  +D 
Sbjct: 237 VGI-KPFFWGCMMGFASLIPVVGTAIIWLPVAIYLMLTGHWQWGLFLMGWGAVVVSGIDS 295

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            +RP L+     +     F  ++GG++  G LG+  GP+++    V+        +   E
Sbjct: 296 IIRPLLMQNRSNMSTFWVFLSIIGGIKFFGALGILYGPLILGFAMVMLTLYAEDYRHVLE 355

Query: 355 K 355
           +
Sbjct: 356 E 356


>gi|254230483|ref|ZP_04923858.1| putative permease [Vibrio sp. Ex25]
 gi|262393362|ref|YP_003285216.1| putative permease [Vibrio sp. Ex25]
 gi|151936989|gb|EDN55872.1| putative permease [Vibrio sp. Ex25]
 gi|262336956|gb|ACY50751.1| predicted permease [Vibrio sp. Ex25]
          Length = 361

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 75/346 (21%), Positives = 146/346 (42%), Gaps = 8/346 (2%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++   ++         ++ +   ++ A II    +P++  F  K  +     A+++ V 
Sbjct: 12  RVLMVALLAAAFACYLLVEPYINSIVMAFIISLLMFPVHEWFERKIPKHPNMAALLSCVV 71

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD---IPGGMWASELWTKH 126
           +  + ++PLLF+F   + +             +G  +         I G    +E     
Sbjct: 72  LTFIIVIPLLFVFAAIVQQGSVFSQNTYNWVTNGG-IQDIFQHPFVIKGLAIVNEYLPFD 130

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
              P+++      F  + G + +   A   G    ++ ++   M+  LFF  RD   I  
Sbjct: 131 KIEPKAIAEKIGQFATSFGSNLVAISAKILGDAT-NFLMNFFLMLFVLFFLLRDHDKIIS 189

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +  +   L  +   +I   + +V +S  +G  + AI +GL  G   WLAG P  +  G 
Sbjct: 190 AIRHILP-LSRSQEDRILTEIEQVSKSAVMGSFLTAIAQGLAGGIGMWLAGFPG-LFWGT 247

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +    + IP  G  + +   + YL + G++  A  L +W  + +  +D  LRP L+ G  
Sbjct: 248 MMGFASFIPVVGTALIWIPAAAYLFLTGDMTWAIFLTVWSVVVVGSIDNLLRPLLMQGSA 307

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            +  L  FF L+GG+   GL+GL  GP++ A+  V++       K+
Sbjct: 308 GMNTLMIFFSLLGGLHLFGLIGLIYGPLIFAVTMVLFNIYEEEFKD 353


>gi|218780815|ref|YP_002432133.1| hypothetical protein Dalk_2975 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218762199|gb|ACL04665.1| protein of unknown function UPF0118 [Desulfatibacillum alkenivorans
           AK-01]
          Length = 358

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 121/299 (40%), Gaps = 6/299 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +K F    L ++++   + P++S  + K +   +  A +  + V+ L ++P   L    
Sbjct: 29  VMKPFLTIFLVSMVLAIIAHPLHSWSLKKTKNRQSLAAGLTVIMVLLLIVLPAFILILML 88

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             E   +V  +    + G+   + +  +       E        P  +            
Sbjct: 89  ANESASVVVWINKGLESGLFTDQTVDKL--TSLQKEYLPDVKIDPIEIGKSLSGAAAWLS 146

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              I   A+  G          + M+ ALF+F RDG    +    L   L  +   +I  
Sbjct: 147 KKIISYSATAVGA-LGSTLWKFVLMLFALFYFLRDGVQALRWAMHLSP-LKQSLENEIID 204

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTA 264
              +V RS F G  + A+ +G++ G   + AG+P  +  GV+ A  +M+P  G  + +  
Sbjct: 205 CFKEVSRSAFYGTFLTAVAQGVLGGIGLFFAGLP-PLTWGVVMAFFSMVPVIGTALVWVP 263

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
            +I L   G I +A  L +W  + +   D  LRP L+ G  +L  L  FF L+GG+   
Sbjct: 264 ATILLYATGKIGSAIFLAIWCMVVVGASDNVLRPLLMRGKNELHPLLIFFSLLGGLSAF 322


>gi|332188283|ref|ZP_08390010.1| hypothetical protein SUS17_3412 [Sphingomonas sp. S17]
 gi|332011679|gb|EGI53757.1| hypothetical protein SUS17_3412 [Sphingomonas sp. S17]
          Length = 359

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 66/331 (19%), Positives = 129/331 (38%), Gaps = 3/331 (0%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  I +     +  F   +L A +       ++   +++        A +  + +   
Sbjct: 15  LFLALITIALTAVISSFLIALLWAALAAILFRSLFQWLLAQTGGRRNLAAGLTMLIITFA 74

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +VP L +    + +   +  K+           + + D         +    +   + L
Sbjct: 75  VVVPTLLIGSMVVDQASGVYLKMRSGQIDFAQYFQQIRDALPTRLRQAMDNSGVGSLEGL 134

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           +      L ++    I   A   G     + L+    +   FF  RDG  +         
Sbjct: 135 QSRISRTLSSSVSQ-IATQALSIGRNAFAFALTFGVGLYIAFFLIRDGERLGPAFVRALP 193

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            L      ++      V+R+T  G  I+ + +G +    +W+ G+P+ +  GV+ AI A+
Sbjct: 194 -LEQGVAARLVETFVAVVRATIKGSVIVGLVQGALGAITFWIVGLPAALLWGVLMAIAAL 252

Query: 254 IPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +P  G  I +  V++YLL  G I+    + + G + + + D  LRP LVG    LP    
Sbjct: 253 LPAIGPAIIWGPVAVYLLATGAIWQGAVVIVSGVLVIGLADNILRPILVGRDTGLPDWIV 312

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               +GG+  +GL G+ +GPV+ AL    W+
Sbjct: 313 LLTTLGGIEVLGLSGIVVGPVVAALFLAGWR 343


>gi|78188186|ref|YP_378524.1| hypothetical protein Cag_0203 [Chlorobium chlorochromatii CaD3]
 gi|78170385|gb|ABB27481.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3]
          Length = 362

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 77/360 (21%), Positives = 151/360 (41%), Gaps = 6/360 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M       Q I+  +++ I  +    ++ F   V+ A I    + P+Y+ F        +
Sbjct: 1   MSNNHSTNQRILLLLLLVISALFFTMIRYFLLVVVLAAIFSALAMPVYNRFERGLRGKRS 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A++  ++++ + ++PL  L    + +   L +  V   Q  +  P            S
Sbjct: 61  LSAIMTLLTLLFIVVLPLAILLGLVVKQAIRLSNVAVPFVQEQLLTPSQFDH----HLQS 116

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             +   L   +   +   + L T     +    S F    +   +     +  +FFF RD
Sbjct: 117 LFFYPELVLYREEILQKVSELATKFGTLLFNAISSFTYSAVTEIVLFFVFLYTMFFFLRD 176

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  + Q + +L   L      ++      V R+T  G  ++ + +G + G A ++AG+ S
Sbjct: 177 GKQMLQSMLALLP-LSHTDQYRLLDKFLSVTRATLKGSLVVGMVQGSLAGMALYMAGIES 235

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  G + + +++IP  G+ + +    IYL   G+   A  + L+  I +  +D  +RP 
Sbjct: 236 ALFWGTVMSFLSLIPVLGSALVWIPAVIYLATIGSYPQALGVLLFCMIVVGQIDNIIRPI 295

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           LVG   ++  L  FFG +GG+   G  G+ +GP++ AL   IW+    +  +    I  N
Sbjct: 296 LVGRDTQMHELLIFFGTLGGIGMFGFFGVILGPIVAALFTTIWEMYAESFGDYLSTIQKN 355


>gi|149174467|ref|ZP_01853093.1| hypothetical membrane spanning protein [Planctomyces maris DSM
           8797]
 gi|148846577|gb|EDL60914.1| hypothetical membrane spanning protein [Planctomyces maris DSM
           8797]
          Length = 443

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 74/365 (20%), Positives = 158/365 (43%), Gaps = 25/365 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++  +I+ + ++    +  F  P+  A ++   S P+ + FI +      F A + T  
Sbjct: 8   TVILCLILALGIMFFKVIMPFILPLFLAAVVAMISQPLLNYFIRRTNGHVRFAAGLTTTI 67

Query: 70  VMCLFIVPLLFLFYYGMLE-----------------MKELVSKVVLANQHGIPVPRWLSD 112
           ++   ++PL    + G L+                 ++ +  KV ++N        W  +
Sbjct: 68  IVSAILIPLCVGIFLGSLQLFTTIVNTLDEANWNKTVQTIREKVEISNDKFQQFVDWSHE 127

Query: 113 IPGGMWASELWTKHLSHPQS----LKILSETFLKTNGIDFIPRFASRFG--MIFLDYCLS 166
                  S + +     P+     ++   +  L       +   AS  G         ++
Sbjct: 128 YLQYDIDSLVTSGKSGEPKISEDFIRKNLQATLVPIAKRSLGVAASTVGLLGTLFSALIA 187

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
            I  IIAL++F  DG+ + +   SL   +   Y +++     KV+R+  +   + AIG+G
Sbjct: 188 WIMFIIALYYFLADGYLLIESTQSLIP-VHVDYQRRLIDQFQKVVRAVVIATFLAAIGQG 246

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           L    A  + G    +   ++  I +M+P  G+ + +   +I+L+ +G+  +A  L L G
Sbjct: 247 LTTAIALSIVGFDHFIVFLILATITSMVPLLGSWLIWLPCAIWLMYQGDWGSAIFLILIG 306

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            + +  +D  +R +++    KL  L  F  ++GG++ MGL G+FIGP++ + +  + +  
Sbjct: 307 TLVVGTMDNIIRTYVLQSDAKLHPLLAFVSVLGGLQVMGLWGVFIGPIVASCLHALIQIF 366

Query: 346 IMAIK 350
              +K
Sbjct: 367 NTELK 371


>gi|323495911|ref|ZP_08100979.1| permease [Vibrio sinaloensis DSM 21326]
 gi|323319127|gb|EGA72070.1| permease [Vibrio sinaloensis DSM 21326]
          Length = 361

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 79/354 (22%), Positives = 147/354 (41%), Gaps = 10/354 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++   ++         ++ +   ++ A II    +PI+     K  +     ++ + + +
Sbjct: 13  VLITALLAAGFACFLLVEPYINSIVMAFIISLLMFPIHEWIERKLPKHPNLASLFSCIVL 72

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS-- 128
             + +VPLLF+F   + +       V     HG    + + + P  +    L   +L   
Sbjct: 73  TFIIVVPLLFVFAAIVQQGSAFSQNVYQWVTHGG--IQTIFEHPWVVKGLALVNTYLPFD 130

Query: 129 --HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
              PQ +      F  T G + +   A   G    ++ +    M+  LFF  RD   I  
Sbjct: 131 TIQPQEIAQKVAQFATTFGSNLVGISAKILGDAT-NFLMDFFLMLFVLFFLLRDHDKIIG 189

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +  +   L  +   K+   V +V +S  +G  + A+ +G   G   WLAG P  +  G 
Sbjct: 190 AIRHILP-LSRSQEDKLLDEVEQVSKSAVMGSFLTALAQGFAGGLGMWLAGFPG-LFWGT 247

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +    + IP  G  + +   +IYL + G+   A  L +W    +  +D  LRPFL+ G  
Sbjct: 248 MMGFASFIPVVGTALIWIPATIYLFLTGDTTWAIFLAIWSIAVVGSIDNLLRPFLMQGSA 307

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            +  L  FF L+GG+   GL+GL  GP++ A+  V++       ++   +   N
Sbjct: 308 GMNTLMIFFSLLGGLHLFGLIGLIYGPLIFAITMVLFNIYEEEFQDFLSRQDQN 361


>gi|15616743|ref|NP_239955.1| putative inner membrane protein [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11387270|sp|P57223|Y123_BUCAI RecName: Full=UPF0118 membrane protein BU123
 gi|25307062|pir||A84944 hypothetical protein yb1688 [imported] - Buchnera sp.  (strain APS)
 gi|10038806|dbj|BAB12841.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
          Length = 360

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 78/345 (22%), Positives = 139/345 (40%), Gaps = 7/345 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L+   +    I+ + ++S   +  F      A +I   +WP+            +   +I
Sbjct: 10  LSQSILSLIFIVSMGVISFLVIHPFILGFFWASMIVIATWPLMLKIQKILGGKRSLAVII 69

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWT 124
             + ++ LFI+P+ FL    +     ++  +   N   +P   WL +IP  G      + 
Sbjct: 70  MIIILLLLFIIPVFFLVNSLIATSIPIIHWLGS-NDLELPELAWLQNIPLMGRKIFNSYQ 128

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L+      I        +  +F        G+  +   L + F  +     Y +G  I
Sbjct: 129 TLLNSDGGELIHKIRPYMGHATEFFIIQVRNCGLFIVHSILMLFFSAL----LYWNGEKI 184

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           S  +      L     K I  +  + +R+  LG+ + A+ + L+ G    ++GVP    L
Sbjct: 185 SISIHHFAYRLSEKNGKAILLLATQAVRAVALGVAVTALIQALLSGIGLLVSGVPYWALL 244

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            +I     +I  G         I+L    +    T L +W    +FI+D  LRPF +   
Sbjct: 245 MIIIFFSCLIQLGPLPILIPSIIWLYWNDDTTWGTILLIWSCF-VFILDHILRPFFIRIG 303

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
             LP L T  G++GG+ T G++GLFIGPV++ +   +    I  I
Sbjct: 304 ADLPILLTLSGVIGGLLTFGMIGLFIGPVVLVIFYRLTISWIYGI 348


>gi|328954356|ref|YP_004371690.1| protein of unknown function UPF0118 [Desulfobacca acetoxidans DSM
           11109]
 gi|328454680|gb|AEB10509.1| protein of unknown function UPF0118 [Desulfobacca acetoxidans DSM
           11109]
          Length = 409

 Score =  175 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 67/352 (19%), Positives = 149/352 (42%), Gaps = 2/352 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +     + + I+  S   +K +   +  AL++ F S P+Y + +          + +  +
Sbjct: 40  KTFFGVLTVVILYFSYLIVKPYLVEIFLALVLFFISKPLYQAILGFCRGWRGISSALTCL 99

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +    I+P+L L      +  +L + +      G         +      ++     ++
Sbjct: 100 LLALFIILPILMLAGIIASQALDLYNLISAGLHSGTLWQVLTKKLAFLEDYAKHLNLPVN 159

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                          +   FI   +      F  +  S++ ++   FF + +G     ++
Sbjct: 160 LENLKIEEVIRTALISASQFIYNNSIGLVKGFTTFLFSLLLILFITFFCFLEGDDFIDEI 219

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L   L  A+  +I   V   IR+T  G  I+AI +G++ G  ++  GVP     G + 
Sbjct: 220 KRLSP-LDQAHNDEILGDVENTIRATIRGTVIVAIIQGILGGLGFFCFGVPRAAFWGTVM 278

Query: 249 AIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
              ++IP  GA I +   +++L  +G+I+ +  + LWG + +  +D  ++P+L+ G  + 
Sbjct: 279 IPASVIPVIGAAIIWLPAALFLFFQGHIWQSLGMVLWGGVFIGSIDNLVKPYLMKGARQT 338

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           P + T F ++GG+   G++G  +GP++++ +  + +     I    +   SN
Sbjct: 339 PTIFTLFAIMGGITYFGMIGFILGPLILSFLLSVLEIYRKTILIRSQTPPSN 390


>gi|269966936|ref|ZP_06181008.1| putative lipoprotein [Vibrio alginolyticus 40B]
 gi|269828419|gb|EEZ82681.1| putative lipoprotein [Vibrio alginolyticus 40B]
          Length = 361

 Score =  175 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 76/346 (21%), Positives = 146/346 (42%), Gaps = 8/346 (2%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++   ++         ++ +   ++ A II    +PI+  F  K  +     A+++ V 
Sbjct: 12  RVLMVALLAAAFACYLLVEPYINSIVMAFIISLLMFPIHEWFEQKIPKHPNMAALLSCVV 71

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD---IPGGMWASELWTKH 126
           +  + ++PLLF+F   + +             +G  +         I G    +E     
Sbjct: 72  LTFIIVIPLLFVFAAIVQQGSVFSQNTYNWVTNGG-IQDIFQHPFVIKGLAIVNEYLPFD 130

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
              P+++      F  + G + +   A   G    ++ ++   M+  LFF  RD   I  
Sbjct: 131 KIEPKAIAEKIGQFATSFGSNLVAISAKILGDAT-NFLMNFFLMLFVLFFLLRDHDKIIS 189

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +  +   L  +   +I   + +V +S  +G  + AI +GL  G   WLAG P  +  G 
Sbjct: 190 AIRHILP-LSRSQEDRILTEIEQVSKSAVMGSFMTAIAQGLAGGIGMWLAGFPG-LFWGT 247

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +    + IP  G  + +   + YL + G++  A  L +W  + +  +D  LRP L+ G  
Sbjct: 248 MMGFASFIPVVGTALIWIPAAAYLFLTGDMTWAIFLTVWSVVVVGSIDNLLRPLLMQGSA 307

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            +  L  FF L+GG+   GL+GL  GP++ A+  V++       K+
Sbjct: 308 GMNTLMIFFSLLGGLHLFGLIGLIYGPLIFAVTMVLFNIYEEEFKD 353


>gi|260775444|ref|ZP_05884341.1| predicted permease [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608625|gb|EEX34790.1| predicted permease [Vibrio coralliilyticus ATCC BAA-450]
          Length = 361

 Score =  175 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 77/354 (21%), Positives = 148/354 (41%), Gaps = 10/354 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++   ++         ++ +   ++ A II    +PI+    ++        ++++   +
Sbjct: 13  VLIVALLAAGFACFLLVEPYINSIVMAFIISLLMFPIHEWIENRMPNHRNIASLLSCTLL 72

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS-- 128
             + ++PLLF+F   + +       V     HG    + L + P  +    +   +L   
Sbjct: 73  TVIIVLPLLFVFAAIVQQGSAFSQNVYQWVTHGG--IQALFEHPWVVKGLSIINTYLPFD 130

Query: 129 --HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
              PQ +      F  + G + +   A   G    ++ L+   M+  LFF  RD   I  
Sbjct: 131 EIQPQEIGQKVAQFATSFGSNLVGISAKILGDAT-NFLLNFFLMLFVLFFLLRDHDKIIA 189

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +  +   L  +   K+   V +V +S  +G  + AI +GL  G   WLAG P  +  G 
Sbjct: 190 AIRHILP-LSRSQEDKLLDEVEQVSKSAVMGSFLTAIAQGLAGGIGMWLAGFPG-LFWGT 247

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +    + IP  G  + +   + YL + G+   A  L +W    +  +D  LRP L+ G  
Sbjct: 248 MMGFASFIPVVGTALIWIPAAAYLFLTGDTTWAIFLTIWSVAVVGSIDNLLRPLLMQGSA 307

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            +  L  FF L+GG+   GL+GL  GP++ A+  V++       ++  ++   N
Sbjct: 308 GMNTLMIFFSLLGGLHLFGLIGLIYGPLIFAITMVLFNIYEEEFQDFLDEQDQN 361


>gi|297518809|ref|ZP_06937195.1| putative inner membrane protein [Escherichia coli OP50]
          Length = 318

 Score =  175 bits (445), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 116/307 (37%), Gaps = 7/307 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +
Sbjct: 18  LFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMV 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQS 132
           FI+P+  L    +     L+ K + +    +P   WL+ IP  G      W   L    +
Sbjct: 78  FIIPIALLVNSIVDGSGPLI-KAISSGDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGT 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  ++Q +    
Sbjct: 137 AIMAKVRPYIGTTTTWFVGQAAHIGRFMVHCALMLLFSAL----LYWRGEQVAQGIRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  
Sbjct: 193 TRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++  G         I+L   G+    T L +W    +  +D  +RP L+     LP +  
Sbjct: 253 LVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSG-VVGTLDNVIRPMLIRMGADLPLILI 311

Query: 313 FFGLVGG 319
             G++GG
Sbjct: 312 LSGVIGG 318


>gi|330994841|ref|ZP_08318763.1| UPF0118 inner membrane protein ydiK [Gluconacetobacter sp. SXCC-1]
 gi|329758102|gb|EGG74624.1| UPF0118 inner membrane protein ydiK [Gluconacetobacter sp. SXCC-1]
          Length = 331

 Score =  175 bits (445), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 74/334 (22%), Positives = 153/334 (45%), Gaps = 6/334 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            ++L S +  + F        I+  T++P+Y   + +   +     +IA      L + P
Sbjct: 1   MVLLFSAWIEQSFLFAFAWGGILSITTYPLYRRLVQRGMGNGLAAGLIAAAIFALLAV-P 59

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQSLKIL 136
           ++ +     +E+  L++    A   GIP+   ++ IP  G   + LW  +LS P+ L+  
Sbjct: 60  MIAMAVRAGMELPSLMAWGRGALHDGIPLSPQVAAIPHIGPRLAGLWRHYLSDPEELRHW 119

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           +    +     F            +D   + +   ++++F+     ++   + ++G    
Sbjct: 120 TAVASRM----FATGDGRELPHRVMDMTETFVIATLSVYFYLAASRTLQADIRAVGSRFL 175

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
            A  + + R     +R T  G+ ++ +G+G+++G  Y++AG P    L ++TA++++IP 
Sbjct: 176 GARARDVIRNTVGAVRGTVAGLVLVGLGQGVLVGIGYFIAGTPHPALLTLLTAVVSIIPF 235

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             P+   A  +       +  A  + + GAI     D  +RP L+ G   +PFL     +
Sbjct: 236 CGPVLLCATMLMTFAANGVTQAVIVGVIGAIAYGAGDHFVRPRLISGSTSIPFLAVLTAI 295

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +GG+   GLLGLFIGP ++A+   +W+ +    +
Sbjct: 296 LGGLHMFGLLGLFIGPTVIAVALSLWRTAAAEEQ 329


>gi|262274963|ref|ZP_06052774.1| putative permease [Grimontia hollisae CIP 101886]
 gi|262221526|gb|EEY72840.1| putative permease [Grimontia hollisae CIP 101886]
          Length = 360

 Score =  175 bits (445), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 74/339 (21%), Positives = 138/339 (40%), Gaps = 10/339 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +  +   ++ A I+    +P++     K        A ++ + +  + I+P++F+    
Sbjct: 27  LIAPYIGSIVLAFIVSLLFFPLHDRIEQKLPSHPNVAAALSCILLTVMIIIPMIFVAAAI 86

Query: 86  MLEMKEL----VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
           + +           +       I    W+  +       +       +PQ L   + + +
Sbjct: 87  LGQGVTFFTGAYEWLTQGGAKAILDAPWVKSVLA--LVDKWLPTESINPQELVAKAASTV 144

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                  I   +   G +   + ++ + M+  LFF  RD   I   L  +   L  +   
Sbjct: 145 SALSSQMIGMSSKILGDVTGVF-VNFLLMLFVLFFLLRDHEKIINTLRHVSP-LSRSQED 202

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPI 260
            +     KV +S  LG  + A+ +GLV G A WLAG  + +  G + A  + IP  G  +
Sbjct: 203 TLLDEAEKVAKSAVLGSFLTALAQGLVGGFAMWLAGF-AGLFWGTMMAFASFIPVVGTAL 261

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +   + YL + G    A  L  WG I +  +D  LRP L+ G   +  L  FF L+GG+
Sbjct: 262 IWVPAATYLFLIGQWEWAAFLAGWGVIVVGSIDNLLRPLLMQGNSGMNTLLIFFSLIGGL 321

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              GL+GL  GP++ +L  V+++          EK  ++
Sbjct: 322 HVYGLMGLIYGPIIFSLTLVLFRMYETEFHSFLEKQDNS 360


>gi|39995960|ref|NP_951911.1| membrane protein [Geobacter sulfurreducens PCA]
 gi|39982725|gb|AAR34184.1| membrane protein [Geobacter sulfurreducens PCA]
 gi|298504973|gb|ADI83696.1| membrane protein [Geobacter sulfurreducens KN400]
          Length = 363

 Score =  175 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 81/321 (25%), Positives = 144/321 (44%), Gaps = 7/321 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           +  ++ +    +  F AP+  A +IG  ++P+Y    +         A I T +V+   +
Sbjct: 15  VALMLYLVYAIVAPFLAPLGWAAVIGVLTFPLYRKLRAGVGGRELLAAGIMTPAVVITLV 74

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           VP++ L ++ + E       +      G      L+ I          T+  ++   L +
Sbjct: 75  VPVVGLTFFIIQEATLAYQFLERVAADGG--EAVLAKIRAHHLIHPWITRIEAYTGPLSL 132

Query: 136 LSETFLKTNGIDFIPRFASR---FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +T       +   +              + L II M+IALFF Y DG  + +++ ++ 
Sbjct: 133 EIDTTFLPEVKEVAAKILGYSKEAVKNAFLFILKIILMVIALFFIYLDGERVQRRVLAII 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L   +  ++S  V +V+ +   G+ +  + +G + G    +AG+PS V  G I A+ A
Sbjct: 193 P-LTEQHKIELSDTVRRVLTAVMFGVFLTCLVQGALGGIGLLVAGIPSPVLFGAIMAVCA 251

Query: 253 MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           +IP  G  + +   +IYLL+ G I     L +WG   +  +D  +RPF + G  KLP L 
Sbjct: 252 LIPVVGTALIWLPAAIYLLLNGQIVQGVGLMIWGFAVVSSIDNVIRPFFISGKAKLPVLV 311

Query: 312 TFFGLVGGVRTMGLLGLFIGP 332
              G +GG+ + GLLG  IGP
Sbjct: 312 IAIGGLGGLASFGLLGAVIGP 332


>gi|115376869|ref|ZP_01464091.1| putative exported protein [Stigmatella aurantiaca DW4/3-1]
 gi|310821801|ref|YP_003954159.1| hypothetical protein STAUR_4552 [Stigmatella aurantiaca DW4/3-1]
 gi|115366111|gb|EAU65124.1| putative exported protein [Stigmatella aurantiaca DW4/3-1]
 gi|309394873|gb|ADO72332.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 358

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 72/342 (21%), Positives = 137/342 (40%), Gaps = 10/342 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             I   +    I++    L  F  PVL    +     P+      K +   +  A + T 
Sbjct: 11  NLIFAGLFALAIILFSRILLPFVMPVLLGGFLVVLFMPVQDFLCRKLKGRKSLCAAVCTA 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +V  L +VPL  + +    E+ +L++ +    +        ++++P G     L      
Sbjct: 71  TVFLLILVPLAGVGWLVGRELLQLMADLPALLERVDLRNELIANLPHG-----LGRYVRV 125

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
            P+  +          G   I +     G    +  + +  M +++++F+ DG  +  + 
Sbjct: 126 DPEGSETERVLLSAAAGGAAIAQHVLNMGS---ELLIDLFLMTVSMYYFFLDGRRLFAEA 182

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L   L   Y +  +R    V  +   G TI A+ +G V      + GVP     G   
Sbjct: 183 TRLVP-LDKRYIQAFAREFADVAYAIVYGNTITALVQGAVGLVGLLIVGVPHAPVWGAAM 241

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I A++P GG  + +  + + LL+ G +   T +  WGA  +  +D  +RP L G  + L
Sbjct: 242 VIAALVPVGGTTLVWGPIGLLLLLSGKVGEGTFVLAWGAGVVSTIDNFIRPRLCGSRMAL 301

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
             L  F  + GG+   G++GL +GP++ A+   + +      
Sbjct: 302 HPLLVFLSMFGGMAVFGMMGLLVGPLIAAIFMAMVRIYRRDF 343


>gi|219682054|ref|YP_002468438.1| hypothetical protein BUAPTUC7_122 [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219621787|gb|ACL29943.1| hypothetical protein BUAPTUC7_122 [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|311085867|gb|ADP65949.1| putative inner membrane protein [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086437|gb|ADP66518.1| putative inner membrane protein [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 360

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 79/346 (22%), Positives = 139/346 (40%), Gaps = 9/346 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L+   +    I+ + ++S   +  F      A +I   +WP+            +   +I
Sbjct: 10  LSQSILSLIFIVSMGVISFLVIHPFILGFFWASMIVIATWPLMLKIQKILGGKRSLAVII 69

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP--GGMWASELW 123
             + ++ LFI+P+ FL    +     ++  +   N   +P   WL +IP  G    +   
Sbjct: 70  MIIILLLLFIIPVFFLVNSLIATSIPIIHWLGS-NDLELPELAWLQNIPLMGRKIFNSYQ 128

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
           T   S    L      ++      FI +           + +  I M+      Y +G  
Sbjct: 129 TLLNSDGGELIHKIRPYMGRATEFFIVQV-----RNCGLFIIHSILMLFFSALLYWNGEK 183

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           IS  +      L     K I  +  + +R+  LG+ + A+ + L+ G    ++GVP    
Sbjct: 184 ISISIHHFAYRLSEKNGKAILLLATQAVRAVALGVAVTALIQALLSGIGLLVSGVPYWAL 243

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           L +I     +I  G         I+L    +    T L +W    +FI+D  LRPF +  
Sbjct: 244 LMIIIFFSCLIQLGPLPILIPSIIWLYWNDDTTWGTILLIWSCF-VFILDHILRPFFIRI 302

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
              LP L T  G++GG+ T G++GLFIGPV++ +   +    I  I
Sbjct: 303 GADLPILLTLSGVIGGLLTFGMIGLFIGPVVLVIFYRLTISWIYGI 348


>gi|219681498|ref|YP_002467883.1| hypothetical protein BUAP5A_121 [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471179|ref|ZP_05635178.1| putative inner membrane protein [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219624341|gb|ACL30496.1| hypothetical protein BUAP5A_121 [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 360

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 78/345 (22%), Positives = 138/345 (40%), Gaps = 7/345 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L+   +    I+ + ++S   +  F      A +I   +WP+            +   +I
Sbjct: 10  LSQSILSLIFIVSMGVISFLVIHPFILGFFWASMIVIATWPLMLKIQKILGGKRSLAVII 69

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWT 124
             + ++ LFI+P+ FL    +     ++  +   N   +P   WL +IP  G      + 
Sbjct: 70  MIIILLLLFIIPVFFLVNSLIATSIPIIHWLGS-NDLELPELAWLQNIPLMGRKIFNSYQ 128

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L+      I           +F        G+  +   L + F  +     Y +G  I
Sbjct: 129 TLLNSDGGELIHKIRPYMGRATEFFIIQVRNCGLFIVHSILMLFFSAL----LYWNGEKI 184

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           S  +      L     K I  +  + +R+  LG+ + A+ + L+ G    ++GVP    L
Sbjct: 185 SISIHHFAYRLSEKNGKAILLLATQAVRAVALGVAVTALIQALLSGIGLLVSGVPYWALL 244

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            +I     +I  G         I+L    +    T L +W    +FI+D  LRPF +   
Sbjct: 245 MIIIFFSCLIQLGPLPILIPSIIWLYWNDDTTWGTILLIWSCF-VFILDHILRPFFIRIG 303

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
             LP L T  G++GG+ T G++GLFIGPV++ +   +    I  I
Sbjct: 304 ADLPILLTLSGVIGGLLTFGMIGLFIGPVVLVIFYRLTISWIYGI 348


>gi|92116459|ref|YP_576188.1| hypothetical protein Nham_0862 [Nitrobacter hamburgensis X14]
 gi|91799353|gb|ABE61728.1| protein of unknown function UPF0118 [Nitrobacter hamburgensis X14]
          Length = 360

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 69/345 (20%), Positives = 145/345 (42%), Gaps = 7/345 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           ++  +I  +   ++ F   +  ++++    +P++              A + T+  + + 
Sbjct: 22  LLALLIYWTFVLIRPFVPILAWSIVLTVALYPVFDLLSRLLGGRPRLAAALLTLINLGIV 81

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
           I P  +L    +  +KEL  ++   N      P  + D P  G    E W +  S+ ++ 
Sbjct: 82  IGPATWLGLSALDGVKELAGQLNAGNLVVPSPPEGVKDWPLIGPNLYEFWNQASSNIRAA 141

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                 +LK      +   A   G+  L + LS+        F +  G  + +   S   
Sbjct: 142 LREVAPYLKPLAGVLLA-LAGNAGVGTLKFLLSVALAG----FLFPYGSQLIEAGKSFLY 196

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            + P   +    +    IR+   G+  +AI + L+ G  + LAG+ S   L     I+++
Sbjct: 197 RIVPEQSEHFLELAGATIRAVSQGVIGVAIIQSLLAGIGFKLAGISSAGLLAFAVMILSI 256

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +  GA I    V I++ +  +   A  L ++  + + ++D  L+P ++   +  P L  F
Sbjct: 257 VQVGAAIVLVPVIIWIWMDKDFTTALLLTVFLGL-VGVLDNVLKPLVMKRGLTTPTLVIF 315

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            G++GG    G++GLFIGP++++L   +    I + +     + S
Sbjct: 316 VGVIGGTLAHGIVGLFIGPIILSLAWELTVAWIRSDRAGTASLPS 360


>gi|311087020|gb|ADP67100.1| putative inner membrane protein [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 360

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 78/345 (22%), Positives = 138/345 (40%), Gaps = 7/345 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L+   +    I+ + ++S   +  F      A +I   +WP+            +   +I
Sbjct: 10  LSQSILSLIFIVSMGVISFLVIHPFILGFFWASMIVIATWPLMLKIQKILGGKRSLAVII 69

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWT 124
             + ++ LFI+P+ FL    +     ++  +   N   +P   WL +IP  G      + 
Sbjct: 70  MIIILLLLFIIPVFFLVNSLIATSIPIIHWLGS-NNLELPELAWLQNIPLMGRKIFNSYQ 128

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L+      I           +F        G+  +   L + F  +     Y +G  I
Sbjct: 129 TLLNSDGGELIHKIRPYMGRATEFFIIQVRNCGLFIIHSILMLFFSAL----LYWNGEKI 184

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           S  +      L     K I  +  + +R+  LG+ + A+ + L+ G    ++GVP    L
Sbjct: 185 SISIHHFAYRLSEKNGKAILLLATQAVRAVALGVAVTALIQALLSGIGLLVSGVPYWALL 244

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            +I     +I  G         I+L    +    T L +W    +FI+D  LRPF +   
Sbjct: 245 MIIIFFSCLIQLGPLPILIPSIIWLYWNDDTTWGTILLIWSCF-VFILDHILRPFFIRIG 303

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
             LP L T  G++GG+ T G++GLFIGPV++ +   +    I  I
Sbjct: 304 ADLPILLTLSGVIGGLLTFGMIGLFIGPVVLVIFYRLTISWIYGI 348


>gi|260654239|ref|ZP_05859729.1| putative membrane protein [Jonquetella anthropi E3_33 E1]
 gi|260630872|gb|EEX49066.1| putative membrane protein [Jonquetella anthropi E3_33 E1]
          Length = 354

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 67/348 (19%), Positives = 124/348 (35%), Gaps = 5/348 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              +      +  +    ++ L+ F+  +  A  +     P+Y  F       S+  A +
Sbjct: 11  RTERRSFLIALGLVTAAFVWLLRPFWGTLFWACALAVLCAPLYRRFQKATGWRSSPSAAV 70

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
               V    I PL         +   +   V       I + ++   +       +    
Sbjct: 71  TLAVVAVAVIGPLCLFAASFFAQATSIYRDVQSG---AIDLSQYSLRVRQSFPVVQAALT 127

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L    S      T        F+ + A   G   L         +   FF  RDG S++
Sbjct: 128 RLGLGGSSLSEGMTSAVLAAGRFVTQNAVSLGQGALGLFADSCLALYMAFFLIRDGGSLA 187

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + L      L     +++      VIRST  G  ++A   G++        G+   +  G
Sbjct: 188 EILIKALP-LGDKRERRLFETFVGVIRSTVKGNVLMAFLHGVIGAVTLGFLGMNGLLLWG 246

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           V   +++++P  G  + +  +SIY+   GN      L       +  VD  LRP +VG  
Sbjct: 247 VAMGVLSLVPLVGTAVVWLPLSIYMASSGNWTGCFFLAGVEIAAMVGVDNVLRPAMVGRS 306

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           +++P        +GG+ + GL G+  GP++ AL    WK  +  + + 
Sbjct: 307 LQMPDYLVLLSTLGGLASFGLGGMIAGPLVAALFVSAWKIFMGELNDR 354


>gi|149185062|ref|ZP_01863379.1| hypothetical protein ED21_18452 [Erythrobacter sp. SD-21]
 gi|148831173|gb|EDL49607.1| hypothetical protein ED21_18452 [Erythrobacter sp. SD-21]
          Length = 357

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 71/318 (22%), Positives = 139/318 (43%), Gaps = 3/318 (0%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +  FF P+L A++      P+Y  F+++++   T  A++  + ++   ++P L++    
Sbjct: 29  VVLPFFQPLLWAVLAAILFQPLYRWFLTRRKGRETQAALLTLLVILLAVVLPALWIGSAV 88

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + E   L                 +         + L    L     ++  +  F++ + 
Sbjct: 89  VAEATRLFLAFRDGQIDVAMYFEQVFSALPANIQASLDRAGLGDLGEVQAQATEFVQAS- 147

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  I + A   G     + L     +   FF  RDG +IS+Q+ +           +++ 
Sbjct: 148 LGLIAQQALAIGGSVFGFVLGFAIALYVGFFLLRDGRAISEQMLAALPFERGI-ADRLAE 206

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTA 264
               ++R+T  G  ++ + +G +    +W+ G+PS + LGVI AI +++P  G  I +  
Sbjct: 207 RFLVLVRATIKGSVVVGLVQGALGAFTFWIVGIPSVLLLGVIMAIASLLPAVGPAIVWVP 266

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            +IYLL  G I+    + + G   + ++D  LRP LVG    +P        +GG+   G
Sbjct: 267 AAIYLLATGAIWQGVVVIVSGVAVIGMIDNVLRPILVGRDTGIPDWLILITTLGGIALFG 326

Query: 325 LLGLFIGPVLMALIAVIW 342
           L G+ IGP++  L    W
Sbjct: 327 LSGIVIGPLVAGLFLAGW 344


>gi|322419533|ref|YP_004198756.1| hypothetical protein GM18_2017 [Geobacter sp. M18]
 gi|320125920|gb|ADW13480.1| protein of unknown function UPF0118 [Geobacter sp. M18]
          Length = 354

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 67/336 (19%), Positives = 135/336 (40%), Gaps = 7/336 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +  I++          P+   LIIG  + P Y+  + +        A    ++V   F++
Sbjct: 16  VGAIVLFAMLAAPVIKPLAWGLIIGIATMPHYNRLLHRSPAHPGRCAGAMVLAVAVCFVL 75

Query: 77  PLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           P+  L     +   E   +   L           +   P     + L  +       +  
Sbjct: 76  PVTALVITAAVNAPEWYKQAEQLVTTLTRSGTAAMGQFPYAQNLTSLVDRFGIDLAGIGG 135

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                +  +    I   A+      +++  +++  +  LFF YRDG  +           
Sbjct: 136 K----IAASSSGIILGLAADLARNMMNFIGTLLIALFILFFIYRDGDRVVSLCIGRLAP- 190

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
            P   ++ +  +  +  +  +G  +    +G + G  YW+A VP+ +  G +TAI A+IP
Sbjct: 191 DPRKAQRFATEIRSITTAVVVGTVLTCAAQGAIAGVGYWVADVPAPIFFGTLTAIAALIP 250

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G  I +  ++ ++ + G+   A  L  W  I +   D  +RP  +G    +  L    
Sbjct: 251 VVGTAIIWVPLAGFMALSGSYLTAALLAGWCLIFVGFADNAIRPLAIGASSDISTLAVVL 310

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           G + G  +MGLLGL +GPV+ A++  +W +++  ++
Sbjct: 311 GAICGAMSMGLLGLIVGPVIFAILFSMWDDAVAEVE 346


>gi|303246658|ref|ZP_07332936.1| protein of unknown function UPF0118 [Desulfovibrio fructosovorans
           JJ]
 gi|302491998|gb|EFL51876.1| protein of unknown function UPF0118 [Desulfovibrio fructosovorans
           JJ]
          Length = 371

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 68/345 (19%), Positives = 137/345 (39%), Gaps = 10/345 (2%)

Query: 14  WMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             ++ I+  +LY     L+ F   ++  +++     P++    +   +  T  A+I T  
Sbjct: 11  AFLLIILAAALYLAYVVLRPFVDILIIGVVLSALFRPVHRRIDAFCGKRPTVSALITTCL 70

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +    I+P+ F     + +  + V   + A+   +    + S      + + L       
Sbjct: 71  IFTCLIIPVFFFLGSLVTQGVQSV-NALQAHLSSMDFNAFFSHEAVAPYINWLHEHLPFL 129

Query: 130 PQSLKILSETFLK--TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                 L    L    N    +    +     F    ++ + +I  LFF  RDG ++  +
Sbjct: 130 DVKKLALRADLLSISKNAGQILLNSGTTIIGNFFVLTMNFVILIFVLFFLIRDGEAMLAR 189

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  L   L      +I R +  V +S  LG  +IA+ +G   G   ++ G+      G +
Sbjct: 190 VRYLLP-LSTDQEDRIFRQLDDVAKSVILGAFLIALAQGAAGGLGLFIVGIQ-PFFWGCM 247

Query: 248 TAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
               ++IP  G  I +  V++YL++ G       L  WGA+ +  +D  +RP L+    K
Sbjct: 248 MGFASLIPVVGTAIIWLPVALYLIVTGQWQWGVFLIAWGALVVSSIDSIMRPILMRNRSK 307

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           +     F  ++GG++  G LG+  GP+++    V+          
Sbjct: 308 MSTFWVFLAIIGGIKFFGALGILYGPLVLGFAMVMLSLYAEDYSH 352


>gi|300115131|ref|YP_003761706.1| hypothetical protein Nwat_2608 [Nitrosococcus watsonii C-113]
 gi|299541068|gb|ADJ29385.1| protein of unknown function UPF0118 [Nitrosococcus watsonii C-113]
          Length = 360

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 80/338 (23%), Positives = 145/338 (42%), Gaps = 4/338 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +  +++ I+ V L  +  +   VL A+I     +P+Y+  + K        ++   +
Sbjct: 14  KIFIMLLLISILAVFLVMIHEYIIAVLLAIIFTAMLYPVYAWILKKFHGKQVLSSMTTLL 73

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +  +PLL L      E  ++   +    +  IP    +S +           +   
Sbjct: 74  LAILMIGLPLLGLLGAVAAEAIQVSDTIGPWIEKKIPDQN-VSSLHEFPQWLPFADQLEP 132

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +   +      F    G  FI    S+     + + +    M+ A+FFF+  G      L
Sbjct: 133 YRTRILAKVGEFAGNAGA-FIASGISKATQGTIGFIVKFFIMLYAMFFFFIWGPDSLINL 191

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 L       I      V ++T  G+ II + +G ++G A+W+AG+   +  G IT
Sbjct: 192 IRYLP-LTEKDRSHILEKGLSVTKATLKGILIIGVLQGTLVGLAFWIAGIKGAIFWGTIT 250

Query: 249 AIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +++ IPG GAP+ +    IYLL    I  A  + LWG I +  VD  LRP +VG   K+
Sbjct: 251 VVLSAIPGLGAPVVWIPAVIYLLATNQIGWAIGMTLWGIIIVGSVDNILRPRIVGSETKM 310

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           P L      +GG+   G++G+ +GP++ AL+  +    
Sbjct: 311 PDLLILLATLGGILMFGMVGVIVGPIIAALLITVLDIY 348


>gi|189347655|ref|YP_001944184.1| hypothetical protein Clim_2181 [Chlorobium limicola DSM 245]
 gi|189341802|gb|ACD91205.1| protein of unknown function UPF0118 [Chlorobium limicola DSM 245]
          Length = 376

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 73/350 (20%), Positives = 149/350 (42%), Gaps = 6/350 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  ++  I  +    ++ FF  +  A I    S PIYS             + +  +
Sbjct: 23  KVVLLLIVFVISALFFAMIRYFFMAIFLAAIFSALSMPIYSRIERFVRGRKNLSSALTMI 82

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           S+  +  +P   +     ++   +    V   Q  +  P   +     M  S  + + L 
Sbjct: 83  SLFIMVFLPFTAVMGIVAVQAVNISRAAVPWIQAQLKEPATYNT----MLQSFPYYRELE 138

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             +   +     L      F+    S   +  ++    +   +  +FFF +DG  + +++
Sbjct: 139 LYREEILQKAAELAGTAGTFLFNSLSSITVTAMNELFLMFIFLYTMFFFLKDGRLLLEKI 198

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 L  +   ++      V R+T  G  ++ + +G V G A  LAG+ S +  G I 
Sbjct: 199 MYYVP-LDESDQYRLLDRFLSVTRATLKGTMVVGLIQGSVAGLALHLAGIESALFWGTIM 257

Query: 249 AIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           ++++++P  G P+ +   +IYL + G+   A  +FL+ +I +  +D  LRP L+G   ++
Sbjct: 258 SVLSVVPVLGPPLVWLPAAIYLAVTGHYTEAAAVFLFCSIIVSQLDNVLRPILIGRDTQM 317

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
             L  FFG +GG+   GL G  IGP++ AL   +W+       +  +++ 
Sbjct: 318 HELMIFFGTLGGLGLFGLFGFIIGPIVAALFITVWEIYGETFSDYLQEVK 367


>gi|222053456|ref|YP_002535818.1| protein of unknown function UPF0118 [Geobacter sp. FRC-32]
 gi|221562745|gb|ACM18717.1| protein of unknown function UPF0118 [Geobacter sp. FRC-32]
          Length = 360

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 69/328 (21%), Positives = 121/328 (36%), Gaps = 7/328 (2%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P+  ALIIG  + P Y+    +        A +  ++V   F++P+  L           
Sbjct: 32  PLAWALIIGIATIPYYNRLTQRIPNRPGRCAGLMVLAVTVCFVLPIAGLITTIAQNAPAW 91

Query: 93  VSKVV-LANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
                 L           L  IP     + L  K           S   +       I  
Sbjct: 92  FQTAQGLVRDFATSGSTILHRIPFIDRITSLVEKSGIDVGGYAAKSAGPISGG----IVN 147

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
            A+       +    ++  +  LFF YRDG  +     +          ++    +    
Sbjct: 148 AATNMAKGLAELMFILVVALFILFFVYRDGERVMSTAVTRFAP-DGNNMRRYLSRIRATT 206

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLL 270
            +  +G     + +G++ G  Y+ A VP+ V    +T++ A++P  G  I +  ++ Y+ 
Sbjct: 207 TAVAVGTLFTCLVQGIIAGIGYFFADVPAPVLFAGLTSVAALVPVVGTAIIWVPLAAYVA 266

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            KG    A  L LW    + + D  +RP  VG    +P      G + GV T+GLLGL +
Sbjct: 267 FKGAYVTAGLLALWCVFMVGLADNAIRPIAVGAKGNVPVPAVVLGAICGVTTIGLLGLIL 326

Query: 331 GPVLMALIAVIWKESIMAIKENKEKISS 358
           GP++ A +  +W E     +    +   
Sbjct: 327 GPIIFATVINLWHELATVERSETAQGEE 354


>gi|254503591|ref|ZP_05115742.1| conserved domain protein, putative [Labrenzia alexandrii DFL-11]
 gi|222439662|gb|EEE46341.1| conserved domain protein, putative [Labrenzia alexandrii DFL-11]
          Length = 367

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 70/344 (20%), Positives = 131/344 (38%), Gaps = 7/344 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              I   ++      SL  +  FFA +L A+++    +P Y+    K        A I T
Sbjct: 27  DIAIRLGVLGVFAYFSLQLVAPFFAFLLWAVVLTVALYPAYAWLTGKLGGRKVLSATILT 86

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKH 126
           +  + + I P+  L    +  ++     V        P+P  L+++P  G   +E W   
Sbjct: 87  LIGLGIVIGPVAVLVVSLVETLQRFYEGVTSGAISVPPLPPKLAELPMVGEKIAEFWQLA 146

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
               +         +   G   +   AS  G +        I  II     +  G +++ 
Sbjct: 147 SQSLEQFLTKIGPMVAPAGTKILSVLASLSGSVLF-----FIVSIILSGCLFVPGPALAS 201

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
                 + +      +   +    IR+   G+  +A+ +GL+ G       VP    L  
Sbjct: 202 GAKRFADRIIAPRGGEFVDLAGATIRNVSRGVIGVAVIQGLLTGVILIAFAVPLAGLLTF 261

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
              I+ +I  G  +      I+      +  A  LF    + + +VD  LRP L+   + 
Sbjct: 262 AALILCIIQIGPALVILPTIIWTWSSWELLPAL-LFTVLIVPVMLVDNVLRPILMSRGLD 320

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +P L    G++GG    GL+GLF+GPV++++   +    + A +
Sbjct: 321 VPMLVILIGVLGGTLAYGLIGLFLGPVILSVFYELVIAWVKAGE 364


>gi|302038875|ref|YP_003799197.1| hypothetical protein NIDE3589 [Candidatus Nitrospira defluvii]
 gi|300606939|emb|CBK43272.1| conserved membrane protein of unknown function DUF20 [Candidatus
           Nitrospira defluvii]
          Length = 360

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 93/354 (26%), Positives = 160/354 (45%), Gaps = 9/354 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +N Q I       ++L  LY      + F  PVL A+I+    +P++    +      + 
Sbjct: 1   MNRQQIFALCFFGVLLALLYQMGLMFRPFVFPVLWAVILAHLCFPLHIRLTAWLGGRESH 60

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG--IPVPRWLSDIPGGMWA 119
            AV+ T++ + L +VPL+ L    + E       V      G    +P  LS +PGG   
Sbjct: 61  SAVLLTLAALALVVVPLVVLSVMLVKEAGSADRAVREWIASGGVQQLPDRLSGLPGGHLV 120

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            E   +       L+    +  KT    FI    S             + M+  LFFF++
Sbjct: 121 REWLERFTGRESDLEQFVLSSAKT-FSRFIVGELSDLVRDVFMLVADFLVMMFTLFFFFK 179

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG      L +L   L  ++  KI   + + IR+   G+ + AI +GL+ G AY + GVP
Sbjct: 180 DGRHWLASLYALIP-LEASHKDKILARLDQTIRAVVKGIVLTAIAQGLLAGVAYAVLGVP 238

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             + L  +T ++A +P GG  + +  V++YLL  G +     +  WG   +  +D+ L+P
Sbjct: 239 FPMVLMALTILLAPLPFGGTALIWGPVALYLLWAGAVGKGLVMLAWGIGVVSTIDQILKP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             +G   ++P L   F ++GG+   G+LGLF+GP+L+ L     +      +++
Sbjct: 299 LFIGQGAEIPVLLLTFSVLGGLAVYGILGLFLGPILVGLFLTALQIYRDDYQQH 352


>gi|71279220|ref|YP_271255.1| hypothetical protein CPS_4608 [Colwellia psychrerythraea 34H]
 gi|71144960|gb|AAZ25433.1| putative membrane protein [Colwellia psychrerythraea 34H]
          Length = 370

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 129/352 (36%), Gaps = 7/352 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              I    +  IIL     ++ F    + A I+    +P++    +  + +    + I  
Sbjct: 19  DIAIKLAAMAMIILWCFSIIRPFILITIWAAILAVALYPLHEKLTAALKGNKKLASTIVA 78

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKH 126
           +  + +  +P + L    +   + + + +             + + P  G      W   
Sbjct: 79  IVGISIIAIPSINLSSSAIDSAQHVYTGIEEGTLKIPAADESIKEWPLVGEKLFNFWQDA 138

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
               Q +       LK+     +   A   G   L + +S+I  ++    F      + Q
Sbjct: 139 SQDIQKVAGQYPEQLKSLSSTLLSAVAG-IGGGILQFIVSLIIAVV----FMAKSAPLHQ 193

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L  L   L   +  +        IRS   G+  +A+ + L+ G    +A +P      +
Sbjct: 194 GLSKLMRRLMNDFGDRTISTTIATIRSVATGVLGVAVIQSLMSGVGLMIADIPGAGIWAI 253

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
              I+A+      +    ++ Y     +   A    ++  I +   D  L+P  +G  + 
Sbjct: 254 AVLILAIAQLPPILILGPIAAYYFSVADTTPAIAFLIFS-IIVSASDAFLKPLFLGRGMS 312

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +P L    G +GG+   G++GLF+G V++AL   +  + +    +++E  + 
Sbjct: 313 IPMLVILLGAIGGMLLSGIIGLFVGAVVLALGYELMMDWLSHTPKSEEDNTE 364


>gi|90414156|ref|ZP_01222138.1| hypothetical membrane protein [Photobacterium profundum 3TCK]
 gi|90324828|gb|EAS41361.1| hypothetical membrane protein [Photobacterium profundum 3TCK]
          Length = 368

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 69/353 (19%), Positives = 148/353 (41%), Gaps = 8/353 (2%)

Query: 9   QGIMRWMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +  +R  ++FI+L   Y  +K F  PVL   II     P+     +  +      A +  
Sbjct: 21  ESAIRVGLLFILLAWSYGIVKPFLIPVLWGAIIAVALMPLTVKLENMLKGKRGLSATVIA 80

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKH 126
           +  + +  VP +      +  ++ + S +             +++IP  G    ++W   
Sbjct: 81  LIGILILTVPFVMFSISMVESVEGITSTISSGTLKIPGPTERIANIPIIGQQIFDVWQLF 140

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            ++ +         L +     +   AS  G   +   L  +  ++    F  +  SIS+
Sbjct: 141 STNLEKAFTKFLPQLTSG----LAMMASVVGNSIVS-ILMFVISLLISAAFMANATSISK 195

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +++L   +  A+ ++ + +    IRS  LG+  +A  +  ++G   +  G+P+   + +
Sbjct: 196 SVNTLSVRIAGAHGEEWATLCTATIRSVLLGVVGVACIQAFLVGIGVFAIGLPTAGLITI 255

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +  + A+    A +    V  Y+    +   AT   +W  +   + D  L+P L+G  + 
Sbjct: 256 LVLVFAIAQLPALLVVAPVIAYVYSIHDSTTATIFAVW-TLLAGLSDNFLKPLLMGRGLD 314

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +P      G +GG+ + G+LGLFIGPV++A+   ++ E +    +  E+    
Sbjct: 315 IPMPVILLGAIGGMVSSGILGLFIGPVILAIWYQLFNEWMHESAKADEQEEQE 367


>gi|163803357|ref|ZP_02197234.1| hypothetical protein 1103602000583_AND4_14346 [Vibrio sp. AND4]
 gi|159172870|gb|EDP57710.1| hypothetical protein AND4_14346 [Vibrio sp. AND4]
          Length = 361

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 78/330 (23%), Positives = 144/330 (43%), Gaps = 10/330 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           ++ +   ++ A II    +PI+  F  K       +++++ V +  + ++PLLF+F   +
Sbjct: 29  VEPYINSIVMAFIISLLMFPIHEWFERKMPSHKNLVSLLSCVVLTFIIVIPLLFVFAAIV 88

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH----PQSLKILSETFLK 142
            +             +G    + +   P  + A  L  ++L      PQ++      F  
Sbjct: 89  QQGSVFSQNTYAWVTNGG--IQDIFQHPFVVKALALVNEYLPFDKIEPQAIAEKIGQFAT 146

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           + G + +   A   G    ++ +    M+  LFF  RD   I   +  +   L  +   K
Sbjct: 147 SFGSNLVAISAKILGDAT-NFLMDFFLMLFVLFFLLRDHDKIISAMRHILP-LSRSQEDK 204

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPIS 261
           I   + +V +S  +G  + AI +GL  G   WLAG P  +  G +    + IP  G  + 
Sbjct: 205 ILTEIEQVSKSAVMGSFLTAIAQGLAGGIGMWLAGFPG-LFWGTMMGFASFIPVVGTALI 263

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +   + YL + G+   A  L +W  + +  +D  LRP L+ G   +  L  FF L+GG+ 
Sbjct: 264 WIPAAAYLFLTGDTTWAIFLAVWSIVVVGSIDNLLRPLLMQGSSGMNTLMIFFSLLGGLH 323

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             GL+GL  GP++ A+  V++       K+
Sbjct: 324 LFGLIGLIYGPLVFAVTMVLFNIYEEEFKD 353


>gi|323492023|ref|ZP_08097188.1| hypothetical protein VIBR0546_07984 [Vibrio brasiliensis LMG 20546]
 gi|323313752|gb|EGA66851.1| hypothetical protein VIBR0546_07984 [Vibrio brasiliensis LMG 20546]
          Length = 361

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 77/329 (23%), Positives = 142/329 (43%), Gaps = 10/329 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           ++ +   ++ A II    +PI+     K  +    +++++ + +  + + PLLF+F   +
Sbjct: 29  VEPYINSIVMAFIISLLMFPIHEWIERKLPKHKNTVSLLSCIVLTFIIVFPLLFVFAAIV 88

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH----PQSLKILSETFLK 142
            +       V     HG    + + + P  + +  L   +L      PQ +      F  
Sbjct: 89  QQGSAFSQNVYQWVTHGG--IQTIFEHPWVVKSLSLVNTYLPFDTIEPQEIAQKVAQFAT 146

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           + G + +   A   G    ++ +    M+  LFF  RD   I   +  +   L  +   K
Sbjct: 147 SFGSNLVGISAKILGDAT-NFLMDFFLMLFVLFFLLRDHDKIISAIRHILP-LSRSQEDK 204

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPIS 261
           +   V +V +S  +G  + AI +G   G   WLAG P  +  G +    + IP  G  + 
Sbjct: 205 LLDEVEQVAKSAVMGSFLTAIAQGFAGGIGMWLAGFPG-LFWGTMMGFASFIPVVGTALI 263

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +   +IYL + G+   A  L +W    +  +D  LRPFL+ G   +  L  FF L+GG+ 
Sbjct: 264 WIPAAIYLFLTGDTTWAIFLTVWSVAVVGSIDNLLRPFLMQGSAGMNTLMIFFSLLGGLH 323

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             GL+GL  GP++ A+  V++       +
Sbjct: 324 LFGLIGLIYGPIIFAVTMVLFNIYEEEFQ 352


>gi|254508228|ref|ZP_05120352.1| hypothetical protein VPMS16_2375 [Vibrio parahaemolyticus 16]
 gi|219548845|gb|EED25846.1| hypothetical protein VPMS16_2375 [Vibrio parahaemolyticus 16]
          Length = 359

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 81/356 (22%), Positives = 148/356 (41%), Gaps = 12/356 (3%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++   ++         ++ +   ++ A II    +PI+     K        ++++ V +
Sbjct: 9   VLITALLAAGFACFLLVEPYINSIVMAFIISLLMFPIHEWIEKKLPNHPNISSLLSCVVL 68

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH- 129
             + +VPLLF+F   + +       V     HG    + L + P  +    L   +L   
Sbjct: 69  TFIIVVPLLFVFAAIVQQGSAFSQNVYQWVTHGG--IQTLFEHPWVVKGLSLVNTYLPFD 126

Query: 130 ---PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
              PQ +      F  T G + +   A   G    ++ +    M+  LFF  RD   I  
Sbjct: 127 TVEPQEIAQKVGQFATTFGSNLVGISAKILGDAT-NFLMDFFLMLFVLFFLLRDHDKIIS 185

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +  +   L  +   K+   V +V +S  +G  + AI +G+  G   WLAG P  +  G 
Sbjct: 186 AIRHILP-LSRSQEDKLLDEVEQVSKSAVMGSFLTAIAQGIAGGIGMWLAGFPG-LFWGT 243

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV--GG 303
           +    + IP  G  + +   ++YL + G+   A  L +W    +  +D  LRP L+   G
Sbjct: 244 MMGFASFIPVVGTALIWIPATVYLYLTGDSTWAIFLAIWSIAIVGSIDNLLRPLLMQGSG 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              +  L  FF L+GG+   GL+GL  GP++ A+  V++       K+  ++   N
Sbjct: 304 NAGMSTLMIFFSLLGGLHLFGLIGLIYGPLIFAVTMVLFNIYEEEFKDFLDRQDQN 359


>gi|77164019|ref|YP_342544.1| hypothetical protein Noc_0491 [Nitrosococcus oceani ATCC 19707]
 gi|254436267|ref|ZP_05049774.1| conserved domain protein, putative [Nitrosococcus oceani AFC27]
 gi|76882333|gb|ABA57014.1| Protein of unknown function UPF0118 [Nitrosococcus oceani ATCC
           19707]
 gi|207089378|gb|EDZ66650.1| conserved domain protein, putative [Nitrosococcus oceani AFC27]
          Length = 359

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 77/344 (22%), Positives = 150/344 (43%), Gaps = 16/344 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +  +++ I+ V L  +  +   +L A+I     +P+Y+  + K        ++   +
Sbjct: 13  KNFIMILLVSILAVFLVMIHEYLIAILLAIIFTALLYPVYAWILKKFNGRQVLSSMTTIL 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLA------NQHGIPVPRWLSDIPGGMWASEL 122
             + +  +PLL L      E  ++ + +         +Q+  P+  +   +P        
Sbjct: 73  LAILMIGLPLLGLLGAVAAEAIQISNSIAPWIEKKIPDQNASPLHEFPQWLPFADQLEPY 132

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            T+ L+               N   FI    S+     + + ++   M+ A+FFF+  G 
Sbjct: 133 RTRILAKVGEFA--------GNAGAFIASGISKATQGTIGFIVNFFIMLYAMFFFFIWGP 184

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                L      L       I      V ++T   + II + +G+++G A+W+AG+   +
Sbjct: 185 DSLINLIRYLP-LTEKDRSHILEKGLSVTKATLKSILIIGVLQGILVGLAFWVAGIKGAI 243

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             G IT +++ +PG GAP+ +    IYL+    I  A  + LWG I + +VD  LRP +V
Sbjct: 244 FWGTITVVLSAVPGLGAPVVWIPAVIYLIATDQIGWAIGMTLWGIIIVGLVDNILRPRIV 303

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           G   K+P L      +GG+   G++G+ +GP++ AL+  +    
Sbjct: 304 GSEAKMPDLLILLATLGGILMFGMVGVIVGPIIAALLITVLDIY 347


>gi|189426238|ref|YP_001953415.1| hypothetical protein Glov_3189 [Geobacter lovleyi SZ]
 gi|189422497|gb|ACD96895.1| protein of unknown function UPF0118 [Geobacter lovleyi SZ]
          Length = 361

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 86/354 (24%), Positives = 169/354 (47%), Gaps = 5/354 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M  T+L    +   +++ + L+   FL  F AP+  ALIIG  ++P Y   +   ++   
Sbjct: 1   MDRTLLKTLLVFTLILLGVYLLGKIFL-PFLAPIAWALIIGIITYPAYLRLLDLLKQREA 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP--VPRWLSDIPGGMW 118
           + A + T++VM +F++P++ L      E+ +    V  +   G    + +  +  P    
Sbjct: 60  WSAALMTLAVMLVFVLPVVSLVSVLAQEVAQAYQFVSSSVSSGGAEKLLQQWAGQPQWAP 119

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             + +   +         S       G+  +  F +        + + ++FM+  LFF Y
Sbjct: 120 YVDKFKTLVGGSSFSLTDSVMANSKEGLAKLLGFLTSLLANSFSFLMDMVFMLFILFFVY 179

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            DG  +   L+ +   L  +  +K+S++V  V+     G  +  + +G++ G+AY L GV
Sbjct: 180 LDGERVLLWLNRMLP-LEESLQEKLSQVVRDVLSGFIFGTLLTCLVQGILAGAAYLLFGV 238

Query: 239 PSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           PS + L V+TAI  +IP  G  + +   ++YL ++G+   A  + LWG + + + D  ++
Sbjct: 239 PSPLLLAVLTAIGGLIPVVGTALIWLPAALYLYLQGSAVKAVIMILWGFLAVGMSDNVVK 298

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           P  +   + LP LP   G +GG+   G+LG   GP+L+A++  ++    + + E
Sbjct: 299 PIFMSSRVTLPILPIMIGALGGLAAFGVLGAIFGPLLLAILYELYVIEPVPVAE 352


>gi|323698189|ref|ZP_08110101.1| protein of unknown function UPF0118 [Desulfovibrio sp. ND132]
 gi|323458121|gb|EGB13986.1| protein of unknown function UPF0118 [Desulfovibrio desulfuricans
           ND132]
          Length = 368

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 60/336 (17%), Positives = 140/336 (41%), Gaps = 8/336 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
               ++ F   ++ + ++     P+++  +   +   T+ + +    ++   ++P+ FLF
Sbjct: 31  GFSLVEPFMHTMIFSTVLAVLFTPVFNWALKLCKGRRTWASALTVGIIVFALVLPMAFLF 90

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +  E +  +      G    +    +      + L  + L   +  ++  +  + 
Sbjct: 91  MALISQGVESLVALNAWIAQGTY--KSFLSLEMLDKYAALVHEQLPFLRIDEVQIQAGIL 148

Query: 143 TNGIDF---IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
               +F   +  F +          +  + M+  LF+F RDG  +   +  L   L P  
Sbjct: 149 QYSREFAQNMLSFGTSLARDGAKLVMHFLLMVFILFYFMRDGTKMVAYIKRLSP-LKPKQ 207

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GA 258
              I   + +V R   +G  ++A+ +G   G    +AG+P     G + A+ ++IP  G 
Sbjct: 208 EDYIIDSLKRVARGVLMGCLLVAVLQGFAGGVGLAVAGIP-AFFWGGMMALSSLIPVLGT 266

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            + +     YL + G    A  L LW  I +  +D  LRP  +    ++     F  ++G
Sbjct: 267 GLVWVPAVGYLFLSGQWKMAIFLALWCGIFVVGIDTILRPIFMREASRVSTFYIFIAILG 326

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G+ + G+LG+F GP++++ + V+ +  +    ++ +
Sbjct: 327 GIYSFGMLGIFYGPLILSFVMVMLQLYLEEYADDLD 362


>gi|114570113|ref|YP_756793.1| hypothetical protein Mmar10_1563 [Maricaulis maris MCS10]
 gi|114340575|gb|ABI65855.1| protein of unknown function UPF0118 [Maricaulis maris MCS10]
          Length = 398

 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 77/336 (22%), Positives = 140/336 (41%), Gaps = 4/336 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +  +  + + I  V L+ ++ + A +  A +I       +     K  +     A +  
Sbjct: 10  QRAFIAALALIISWVFLWMIRDYLAALFLAAVITLFLAKPHDWLSGKLGKRRGLAAGLLV 69

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
              +  F++P   L      +  ++   V    Q  +   R  + + G         + +
Sbjct: 70  TGAVLAFVIPAAILLGLVAEQAIDVTGMVTPWVQSQVSEIRT-NGLDGLPDWLPFRDEMI 128

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            +  +L         + G   +    +  G  FL   L++  +I ALFFF   G   ++ 
Sbjct: 129 EYQATLTAQIGNLAGSVGRMLVNSLRAGTG-GFLVATLNLFILIYALFFFLMTGRDAARS 187

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
             +L      A  + ++      IR+T  G  +IA+ +G + G   ++AGVP  +    I
Sbjct: 188 AVTLLPMTVEAR-ELLAERALSTIRATVKGSFLIALVQGGLTGVGLFVAGVPGAIFWAAI 246

Query: 248 TAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A++++IP  G P+ +   +I+L   G+   A  L  WGAI +   D  LRP LVG   K
Sbjct: 247 AALLSIIPMIGPPLIWAPAAIWLAATGHPVAAGGLAAWGAIVVSTSDNILRPVLVGKDAK 306

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +  L      +GG+   G +G+ IGPV+ AL   +W
Sbjct: 307 MSDLMVLISTLGGLTLFGAVGIIIGPVIAALFTSVW 342


>gi|91228319|ref|ZP_01262248.1| putative permease [Vibrio alginolyticus 12G01]
 gi|91188135|gb|EAS74438.1| putative permease [Vibrio alginolyticus 12G01]
          Length = 347

 Score =  171 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 76/340 (22%), Positives = 144/340 (42%), Gaps = 8/340 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           ++         ++ +   ++ A II    +PI+  F  K  +     A+++ V +  + +
Sbjct: 4   LLAAAFACYLLVEPYINSIVMAFIISLLMFPIHEWFEQKIPKHPNMAALLSCVVLTFIIV 63

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD---IPGGMWASELWTKHLSHPQS 132
           +PLLF+F   + +             +G  +         I G    +E        P++
Sbjct: 64  IPLLFVFAAIVQQGSVFSQNTYNWVTNGG-IQDIFQHPFVIKGLAIVNEYLPFDKIEPKA 122

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           +      F  + G + +   A   G    ++ ++   M+  LFF  RD   I   +  + 
Sbjct: 123 IAEKIGQFATSFGSNLVAISAKILGDAT-NFLMNFFLMLFVLFFLLRDHDKIISAIRHIL 181

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L  +   +I   + +V +S  +G  + AI +GL  G   WLAG P  +  G +    +
Sbjct: 182 P-LSRSQEDRILTEIEQVSKSAVMGSFMTAIAQGLAGGIGMWLAGFPG-LFWGTMMGFAS 239

Query: 253 MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            IP  G  + +   + YL + G++  A  L +W  + +  +D  LRP L+ G   +  L 
Sbjct: 240 FIPVVGTALIWIPAAAYLFLTGDMTWAIFLTVWSVVIVGSIDNLLRPLLMQGSAGMNTLM 299

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            FF L+GG+   GL+GL  GP++ A+  V++       K+
Sbjct: 300 IFFSLLGGLHLFGLIGLIYGPLIFAVTMVLFNIYEEEFKD 339


>gi|213428578|ref|ZP_03361328.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
          Length = 333

 Score =  171 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 59/281 (20%), Positives = 114/281 (40%), Gaps = 8/281 (2%)

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQ-SLKILS 137
            L    +++    +   V      +P   WL++IP  G      W   L     ++    
Sbjct: 44  ALLVNSIVDGSGPLIHAVTGGDMTLPDLAWLNNIPLVGAKLYAGWHSLLDMGGSAIMAKV 103

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
             ++ T  I F+ + A+  G   +   L ++F  +     Y  G  ++  +      L  
Sbjct: 104 RPYIGTTTIWFVGQ-AAHIGRFMMHCALMLLFSAL----LYWRGEQVAMGIRHFACRLAA 158

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                   +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  ++  G
Sbjct: 159 KRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGVGLAISGVPYATLLTVVMILSCLVQLG 218

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
                    I+L   G+    T L +W A  +  +D  +RP L+     LP L    G++
Sbjct: 219 PLPVLIPAIIWLYWTGDTTWGTVLLVWSA-VVGTLDNVIRPVLIRMGADLPLLLILSGVI 277

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           GG+   G++GLFIGPVL+A+   ++   +  +     +   
Sbjct: 278 GGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEVPAPTNEPEE 318


>gi|294101585|ref|YP_003553443.1| protein of unknown function UPF0118 [Aminobacterium colombiense DSM
           12261]
 gi|293616565|gb|ADE56719.1| protein of unknown function UPF0118 [Aminobacterium colombiense DSM
           12261]
          Length = 402

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 79/344 (22%), Positives = 152/344 (44%), Gaps = 8/344 (2%)

Query: 14  WMIMFIILVSLYFLKGF--FAPVLSALIIGFTSWPIYSSFISKKEESS--TFLAVIATVS 69
           + ++F+ L +L +L  F    P+  + I+ F  +P Y+    K  +       A + T  
Sbjct: 41  FTVVFLALGALAYLVSFNLLRPLAWSAILSFFVYPFYTLIYEKILKKKYANIAASLTTAV 100

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLA-NQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           ++ L +VP +F+      E   +   +    ++  +   + +  +      +E     L+
Sbjct: 101 IIVLIVVPSIFVGVTLAREGIRIYGHLATVLSRVNVEQGKTIMSVFFPDVLAERIRPFLA 160

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               L  + E  + +     +   +  F    +     +I +++A FF  RDG  I   +
Sbjct: 161 EYPFLVNVIEQ-VGSWIASTLATLSRSFLGDTIRILYQLIVIVVASFFMIRDGHIILDYV 219

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           + +   L     +       +++++   G+T+ A  +G +    +W  G+PS    G + 
Sbjct: 220 NDIVP-LPLKEKEAFFNRAKQILQAVIYGITLTAGVQGFLGALGWWYVGLPSPAVFGAVM 278

Query: 249 AIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A++AMIP  G P+ +   +IYL   G I  A  L +WG I + +VD  +RP  + G  K 
Sbjct: 279 ALLAMIPFIGTPLVWGPGAIYLFYSGQIKEALILAIWGLIVVSMVDNFIRPIFISGGGKA 338

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             L  F G+VGG+ + G LGLF+GP++++L   +        K 
Sbjct: 339 HVLIIFIGVVGGLASWGFLGLFLGPLVISLFIFLLDSYRNIWKN 382


>gi|269102539|ref|ZP_06155236.1| putative membrane protein [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268162437|gb|EEZ40933.1| putative membrane protein [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 371

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 138/346 (39%), Gaps = 7/346 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +++ +I+ +   +K F  PVL   II     P+     +  +      A +  +  + L 
Sbjct: 22  LLLVLIIWTYDIVKPFIIPVLWGAIIAVALMPLTDKLQAVFKGRRGLAATVIALVCIALL 81

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
           I P + +       +   +S +   +       + ++DIP  G    E+W+   ++ +  
Sbjct: 82  IAPFVMVSGSIYDGITHTMSVLQSGDIKIPGPTQRIADIPVVGDKIYEVWSLFATNMEKA 141

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                  +KT     +   AS  G       +  I  +     F      I++ +  +  
Sbjct: 142 VTNFLPEIKTA----VGTLASILGSSLASLVV-FIIALAVAGGFMTHSHKITEAIQKVSI 196

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   K + +    IRS  LG+  +A  + +++GSA +   VP    L +   I+ +
Sbjct: 197 RTVGKNGAKWTTLTAATIRSVLLGVVGVAFIQAMIIGSAMFAFHVPMAGLLTLGVLILCI 256

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
               A I    V  Y+   G+  + T   +W A+   + D  L+P L+G  + +P     
Sbjct: 257 AQLPALIVIAPVIFYVYSTGDGTSTTIFTIW-ALAGGLADNILKPMLMGRGVDVPMPVIL 315

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            G +GG+   G++GLF+G V++A+   ++   + A  E  + +   
Sbjct: 316 IGAIGGMLFSGIIGLFLGAVILAIWYELFMAWLKADAETTQAVVEE 361


>gi|302342979|ref|YP_003807508.1| hypothetical protein Deba_1546 [Desulfarculus baarsii DSM 2075]
 gi|301639592|gb|ADK84914.1| protein of unknown function UPF0118 [Desulfarculus baarsii DSM
           2075]
          Length = 366

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 60/339 (17%), Positives = 138/339 (40%), Gaps = 3/339 (0%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I+F++  +   ++ F   +  A+++     P+Y   +    +     + +  +  + + +
Sbjct: 20  ILFVLYCAYLLVEPFLTSIFLAIVLVVVGGPVYDLMLKLTRQRRGLASALTCLLFILIIV 79

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           VPL+ +      +  +L + V            + S +       +   +H    +   +
Sbjct: 80  VPLVLITGVITSQALDLYNTVSAMLAGNSLSEMFNSGMGRLGPFLDKLEEHTGITRMDIL 139

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                      + +    +       +  +    M+   F+   DG S++Q+   L   L
Sbjct: 140 QHAAEALKYVSNLLYSNLTDLLRGATNLAIGFALMMFVAFYLLMDGQSMAQKAIRLSP-L 198

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +I   +   +R+T  G   +A+ +G   G  + + GVP  +  G +    +++P
Sbjct: 199 PADTTNQIRDDILSTLRTTMRGTVFLAVIQGTAGGLGFGVFGVPHALFWGTVMVFASVVP 258

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G  + F     YL++ G++F    + +W      I D  LRP L+GG   +  L TFF
Sbjct: 259 LVGTALLFIPAGTYLILSGDVFQGVGVMIWCEASQVICDNFLRPRLIGGG-NIHPLLTFF 317

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            ++GG+   G++GL +GP+++A++  + +       ++ 
Sbjct: 318 SVLGGLSVFGMVGLILGPLVLAVLISLLEVYEHYFMDSP 356


>gi|90410495|ref|ZP_01218511.1| putative membrane protein [Photobacterium profundum 3TCK]
 gi|90328736|gb|EAS45020.1| putative membrane protein [Photobacterium profundum 3TCK]
          Length = 379

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 143/346 (41%), Gaps = 8/346 (2%)

Query: 9   QGIMRWMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +  +R  ++FI++V  Y  +K F  PVL   II     P+     +         A I  
Sbjct: 25  ESAIRIGLLFILIVWTYDIIKPFVIPVLWGAIIAVALLPLTQKLEAMLGGRRGLSATILA 84

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKH 126
           +  + L + P + +       +  L   V   +       + ++DIP  G    E+W+  
Sbjct: 85  LLGITLLVAPFVLVSGSIFDAVTHLTDVVQSGDIKIPGPTQRIADIPVIGDKLFEVWSLF 144

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            ++ +         +KT     +   AS  G       +  I  +     F     + S+
Sbjct: 145 STNLEKAVTHFLPEIKTA----VGTMASLVGSSLAT-LVMFIISLAIAAGFMTHSKACSE 199

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            + ++   +   + ++ + +    IRS  LG+  +A  + +++G+  ++ GVP+   + +
Sbjct: 200 AIGTVAVRVVGKHGEEWTTLTAATIRSVLLGVVGVAFIQSMLVGAGMFVFGVPAAGLITL 259

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
              I+ +    A I    V  Y+    +  +AT   +W  +   I D  L+P L+G  + 
Sbjct: 260 GVLILGIAQLPALIIVAPVIFYVFSTQDTTSATIFTVW-VLLAGISDNFLKPMLMGRGVD 318

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           +P      G +GG+   G++GLF+G V++A+   ++   +   ++ 
Sbjct: 319 VPMPVILIGAIGGMLAAGIIGLFLGAVVLAIWYELFVTWLKLDQDE 364


>gi|54302864|ref|YP_132857.1| hipothetical membrane protein [Photobacterium profundum SS9]
 gi|46916288|emb|CAG23057.1| hipothetical membrane protein [Photobacterium profundum SS9]
          Length = 365

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 69/351 (19%), Positives = 149/351 (42%), Gaps = 8/351 (2%)

Query: 9   QGIMRWMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +  +R  ++FI+L   Y  +K F  PVL   II     P+     +  +      A +  
Sbjct: 21  ESAIRVGLLFILLAWSYGIVKPFLIPVLWGAIIAVALMPLTVKLENMLKGKRGLSATVIA 80

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKH 126
              + + IVP +      +  ++ + S +             +++IP  G    ++W   
Sbjct: 81  FIGILILIVPFVMFSISMVESVEGITSTISSGTLKIPGPTERIANIPIIGQQIFDVWQLF 140

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            ++ +         L +     +   AS  G   +   L  +  ++    F  +  SIS+
Sbjct: 141 STNLEKAFTKFLPQLTSG----LAMMASVIGNSIVS-ILMFVISLLISAAFMANATSISK 195

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +++L   +  A+ ++ + +    IRS  LG+  +A  +  ++G   +  G+P+   + +
Sbjct: 196 SVNTLSVRIAGAHGEEWATLCTATIRSVLLGVVGVACIQAFLVGIGVFAIGLPTAGLITI 255

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +  ++A+    A +    V  Y+    +   AT   +W  +   + D  L+P L+G  + 
Sbjct: 256 LVLVLAIAQLPALLVVAPVIAYVYSIHDSTTATIFAVW-TLLAGLSDNFLKPLLMGRGLD 314

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           +P      G +GG+ + G+LGLFIGPV++A+   ++ E +   ++   +  
Sbjct: 315 IPMPVILLGAIGGMVSSGILGLFIGPVILAIWYQLFNEWMHESEKADSQAQ 365


>gi|254516312|ref|ZP_05128371.1| hypothetical protein NOR53_2523 [gamma proteobacterium NOR5-3]
 gi|219674735|gb|EED31102.1| hypothetical protein NOR53_2523 [gamma proteobacterium NOR5-3]
          Length = 368

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 74/344 (21%), Positives = 150/344 (43%), Gaps = 6/344 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +  M +    +    + GF   +L A +    ++P+YS   +     +T  +++  +
Sbjct: 13  KSFVLVMTLAYTGLFFAMISGFAMALLLAAVFSGIAYPLYSWLSNVWGGRNTLASLMTLL 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +   +VPL+ L      +  E+  +V    +  +   +  S +PG +  +E    +  
Sbjct: 73  ISLLAIVVPLMLLLGLVADQALEVAEEVTPWIEQQLDQSQEPSALPGWVPYAEELEPY-- 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               +      F    G+ ++    S      + + L++  ++ A+FFF   G ++ +++
Sbjct: 131 -RDRIMAKVAEFAGNAGV-YLASGLSTLTQGTMSFFLNLFVILYAMFFFLISGSALIEKI 188

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S    L      K+ ++   V R+T  G  II   +G + G  + +AG+ + V  G + 
Sbjct: 189 MSYAP-LSRVDKDKMLQVGLSVSRATVKGTLIIGAIQGALGGLGFAVAGIDAAVFWGAVM 247

Query: 249 AIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A+++++PG GA + +    ++LLI G       L  W A  +  +D  LRP LVG   ++
Sbjct: 248 AVLSILPGIGATLVWAPAVVFLLISGETLVGLGLLAWSAGVVGTIDNFLRPILVGRDTEM 307

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           P L      +GG+   G+ GL +GP+L AL   +         +
Sbjct: 308 PDLLILLSTLGGLGLFGVAGLVLGPILAALFMTVLTIYSRVFAD 351


>gi|153832184|ref|ZP_01984851.1| hipothetical membrane protein [Vibrio harveyi HY01]
 gi|148871495|gb|EDL70350.1| hipothetical membrane protein [Vibrio harveyi HY01]
          Length = 381

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 131/336 (38%), Gaps = 7/336 (2%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           + +   +K F  PV+   II     PI               A    +  + L + PL+ 
Sbjct: 32  MFTYDIIKPFILPVIWGAIIAVALMPICKKLERVYGGKRGLAATTIALLGIALLVAPLVM 91

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSET 139
           +    +      +  +   +         +++ P  G    E+WT   ++ +        
Sbjct: 92  VSGSIVDGATHALEVLQNGDIKIPGPKPSVAEWPLVGDKLYEVWTLFATNLEKAIQTFMP 151

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            +K+     +       G + L      I      +       SI+  L ++        
Sbjct: 152 QIKSGLTSLLGMVGGALGSLLLSIISLAIAAGFMTY-----SESIASGLRTVAVRTAGDN 206

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            K  + ++   I+S  LG+  +A  + L++G+ +++ GVP+   L +I  I+ +    A 
Sbjct: 207 AKSWTTLIAATIKSVLLGVVGVAAIQALLIGAGFFIFGVPAAGLLTLILMILCIAQLPAL 266

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           ++   V  Y+ +  +   AT   +W  +   + +   +P L+G  + +P      G +GG
Sbjct: 267 LAVLPVVGYMYMTNDTSTATMFTVW-VVVAALSENLFKPMLMGRGVDVPMPVILLGAIGG 325

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +   G++GLF+G V++A+   ++   +   K  +++
Sbjct: 326 MLFYGIVGLFLGAVILAIWYELFVWWLSIEKAQQQE 361


>gi|270157435|ref|ZP_06186092.1| putative membrane protein [Legionella longbeachae D-4968]
 gi|269989460|gb|EEZ95714.1| putative membrane protein [Legionella longbeachae D-4968]
          Length = 307

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 155/306 (50%), Gaps = 3/306 (0%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + + II +SL+ +  F   ++ A II   ++P+Y  +           A++ T  +  L 
Sbjct: 3   LTVGIIALSLFIIHRFIPSMIWASIIVIATYPLYERWRRFFGSKDDLSALLFTTLIGLLL 62

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQSL 133
           ++PL +L    + E++  ++ +   N+ G   P +L + P  G      W  ++  P  +
Sbjct: 63  LLPLSWLVGLLIKELQIFINFLQSLNEKGGMAPEFLKNFPWIGSDLVVYWDNNIGKPGMI 122

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           K L      +        +  + G       + + F +++LFFFYRDG  +  Q+  +GE
Sbjct: 123 KGLLSNIHLSLTPT--SYYVKQIGSNLAHRSVQVGFTLLSLFFFYRDGDRLITQIYLVGE 180

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           +     W + +  +PK +R+T  G  ++ +G G ++G  Y L G P+   +G ITA+ AM
Sbjct: 181 NCLGKRWFRYADRLPKALRATVNGTIVVGLGVGFLMGVCYGLVGFPAPTLVGFITALAAM 240

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   PI F  V++ L   G++F A  + +WG + +F+ D  ++P L+GG I+LPFL   
Sbjct: 241 IPFVVPIVFITVAMILFAFGSMFGAIAVLVWGTLVMFVADHFIKPALIGGAIELPFLAVL 300

Query: 314 FGLVGG 319
           FG++GG
Sbjct: 301 FGILGG 306


>gi|53802621|ref|YP_112659.1| hypothetical protein MCA0120 [Methylococcus capsulatus str. Bath]
 gi|53756382|gb|AAU90673.1| putative membrane protein [Methylococcus capsulatus str. Bath]
          Length = 370

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 66/335 (19%), Positives = 146/335 (43%), Gaps = 5/335 (1%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I F+++      K F   +L ++I+     P+++S   +  +     A +  ++++   
Sbjct: 19  LIGFLVIYCYQIFKPFIGLMLWSVILAVAFHPMHASLARRMGDKQGRAATVLVLAILLCV 78

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQSL 133
           +VP   L         +LV +V   +        ++++ P  G     LW+       S+
Sbjct: 79  LVPTALLAVSFADSATDLVRQVRDGSLKVPAPRAFVAEWPLLGDKLYALWSAAHEDIGSV 138

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
               E  ++T   + +  +A+  G   L + +S++   + + +    G + ++ + +   
Sbjct: 139 AARFEPKIRTVTKEILG-YAASAGSAVLKFMVSLVLAGVWMAY-ASSGHAAARAIAN--R 194

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
              P     + R+    IR+   G+  IA  + L+LG+ + L GVP+   L ++  ++ +
Sbjct: 195 MAGPGQGDALVRLSTTTIRAVAQGVIGIACIQALLLGAGFILVGVPAAGVLALLVLLLGI 254

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +   A +      IY+ +  +      +F    I    VD  L+PF++G  +  P     
Sbjct: 255 MQVPALLISLPTVIYVFMTDDSTIVAIMFAIYTIVAGSVDNILKPFMLGRGVDAPMPVIL 314

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            G +GG+ T G++GLF+G V++AL   ++   +  
Sbjct: 315 LGALGGMATGGIIGLFLGSVMLALGYQLFMAWVYD 349


>gi|149196508|ref|ZP_01873562.1| hypothetical protein LNTAR_08459 [Lentisphaera araneosa HTCC2155]
 gi|149140188|gb|EDM28587.1| hypothetical protein LNTAR_08459 [Lentisphaera araneosa HTCC2155]
          Length = 363

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 66/357 (18%), Positives = 142/357 (39%), Gaps = 8/357 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           + +  +    I   +I+++  + L     F   +L ALII    +P++     K      
Sbjct: 8   LNKKTMMDLLIRMTLILYLSYLCLKVFAPFALLMLWALIIAIVLFPLHQKLAKKFNGKQG 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWA 119
             A +  +    +   P++ L +  +  +++L       N         + + P  G  A
Sbjct: 68  RAATVIVLLGCLIIGTPVVVLGFSMVDHVQDLYRAYESGNVQIKEPKESVKEWPIIGRKA 127

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            +LWT   +   +  +  +  + +     +       G + +      +  ++   F   
Sbjct: 128 HQLWTDASADFSAFLVDYKEPITSFFKKMLGAAGGAMGSVAM-----FMGALVISGFMMA 182

Query: 180 DGFSISQQLDSLGEHLF-PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            G   S  +  +   +  P   +K++++    +RS   G+  +A  + L++G    LA +
Sbjct: 183 FGDRGSVAMLKIANRITGPERGEKLTKLSVMTVRSVTTGVIGVAFIQALIIGVGLILADI 242

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLL-IKGNIFNATCLFLWGAIELFIVDKTLR 297
           P+   L ++   + ++   A I    V IY+    G+   A   F    I   + D  L+
Sbjct: 243 PAAAILSLVVMFLGILQLPAVIILLPVIIYMWSSTGSSLAANIFFTIYFIVGSLSDNILK 302

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           P L+G  +  P      G +GG+   GL+GLF+G  L+A+   I+ + +   + N++
Sbjct: 303 PMLLGRGVDAPMPVVLIGALGGMMASGLIGLFLGATLLAVAYRIFMDWVDDPEGNQK 359


>gi|118589355|ref|ZP_01546761.1| hypothetical protein SIAM614_07418 [Stappia aggregata IAM 12614]
 gi|118438055|gb|EAV44690.1| hypothetical protein SIAM614_07418 [Stappia aggregata IAM 12614]
          Length = 372

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 66/352 (18%), Positives = 139/352 (39%), Gaps = 7/352 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              I   ++      SL  +  FF  ++ A+++    +P++    ++        AV+ T
Sbjct: 27  DIAIRLGVLGLFAYFSLQLVAPFFLFLVWAVVLTVALYPVFGWLTARLGGRKVLAAVLIT 86

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKH 126
           +  + + I P+  L    +  ++     V        P+P  L+ +P  G   SE+W   
Sbjct: 87  LCCLAIVIGPVAVLVVSLVDTLQGWYHGVAGGVLKLPPLPEKLAALPVVGAKLSEIWQLA 146

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
               + +       L   G   +   AS  G +        I  II     +    ++++
Sbjct: 147 GQGLEQVFAKVGPTLVPAGSRILGVLASLSGSVLF-----FIVSIILAGCLFVPAPALAK 201

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
                 + +      +   +    IR+   G+  +A+ +GL+ G       VP    L  
Sbjct: 202 GAKLFADRIIAPRGSEFVDLAGATIRNVSRGVIGVAVVQGLLTGIVLIAFSVPLAGVLTF 261

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +  I+ ++  G  +      I+     ++  A  LF    + + ++D  LRP L+   + 
Sbjct: 262 VALILCIVQIGPALVIVPTIIWAWSSWDLVPAL-LFTVLMVPVMLIDNVLRPILMSRGLN 320

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +P L    G++GG    GL+GLF+GPV++A+   +    + A ++   + ++
Sbjct: 321 VPMLVILIGVLGGTIAYGLIGLFLGPVILAVFYELVIAWVKAGEKRSAEETA 372


>gi|308271896|emb|CBX28504.1| hypothetical protein N47_G38280 [uncultured Desulfobacterium sp.]
          Length = 350

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 67/348 (19%), Positives = 150/348 (43%), Gaps = 10/348 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++  ++    ++ L+  + F   ++ +++      P++   +   ++ S   A+I+TV V
Sbjct: 10  LLSALLAGSFVLVLFIFQPFIYTLIFSVVFTVVFQPVHKYVLKVTKQRSGISALISTVFV 69

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + +VP++      + E ++L   +   +   I      + I       E   +     
Sbjct: 70  ITILLVPIILFGVQILNEAQQLYMSLAAGSTKKIVHETIYNLI-------EKTGRFFPAV 122

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           + LK   + +LK  G+  +               ++    + +L++ ++DG  + +   +
Sbjct: 123 KELKFDIDLYLKE-GLGLLLSHIGGVFSNVAKLMINSFIFLTSLYYLFKDGHKLKETFLN 181

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L   L     + IS  +   I S   G  +IA+ +G++  + +   G+P+ +  G +T +
Sbjct: 182 LSP-LPRNENELISNKLEGAINSVIKGNLVIALIQGVLSAAGFAFFGIPNAMFWGSVTTV 240

Query: 251 MAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            A+IPG G  +      I+L + G I     L +WGA  + I+D  L P LVG  +++  
Sbjct: 241 SALIPGVGTSLVLIPAIIFLFLTGKIAPGFGLLVWGAGAVGIIDNFLGPKLVGQRMQVHP 300

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           +     ++GG+   G +G  +GP+ M+L    ++       +  E   
Sbjct: 301 MLILLSVLGGIVFFGPIGFLLGPLTMSLFFAFFEIYSAIRLDQTENTD 348


>gi|126658239|ref|ZP_01729389.1| hypothetical protein CY0110_12607 [Cyanothece sp. CCY0110]
 gi|126620388|gb|EAZ91107.1| hypothetical protein CY0110_12607 [Cyanothece sp. CCY0110]
          Length = 378

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 63/342 (18%), Positives = 145/342 (42%), Gaps = 7/342 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +    I  ++I  ++      ++ F   +L  +I+    +P++    ++         V+
Sbjct: 25  IVDLLIRLFLIGLLLAWCFLLIRPFLGILLWGIILAIAVFPVFVWLKNRLGGRRKLAGVL 84

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWT 124
             +  + + + P+ F+    +   +     +V  N    P P  + ++P  G +   +WT
Sbjct: 85  LILLGIAVIVGPVSFVATLFVGNAQTFADNIVSGNLKVPPPPEGIENLPIIGNYVDHIWT 144

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
              ++  S+    +  L+    + +  FA    ++ L + LSII   I       +   +
Sbjct: 145 SASNNLISVLSKFQPQLEELAKNVLF-FAGNMSLVLLKFILSIIVAGILT----INSKQL 199

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           ++++  +   + P   +   ++    IR    G+  +++ + L++G    +AG+P    L
Sbjct: 200 NRKIKRVFIRITPQQGEDFLQLATATIRGVTRGIIGVSLIQSLLVGIGLMVAGMPLSGLL 259

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            V++ ++ ++  G         I+         A  L +W  I   ++D  L+P  +   
Sbjct: 260 TVLSLVLCILQIGLGPVVFPSIIFAWYTMGTLKALLLTIW-LIFCTLIDNILKPIFMSQG 318

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           + +P L  F G++GG    G+LGLFIGPV+++L   +    +
Sbjct: 319 VSVPILIIFIGVLGGSLLHGILGLFIGPVVLSLGYELLLAWV 360


>gi|27379781|ref|NP_771310.1| hypothetical protein bll4670 [Bradyrhizobium japonicum USDA 110]
 gi|27352934|dbj|BAC49935.1| bll4670 [Bradyrhizobium japonicum USDA 110]
          Length = 365

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 65/334 (19%), Positives = 142/334 (42%), Gaps = 7/334 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           ++  +I+ +   ++ F   +  + ++    +P +S             A I T+  + + 
Sbjct: 24  LLALLIIWTFLIIRPFVPILAWSGVLAVAFYPAFSWVAKILGGRPKTAAAILTLITLGIV 83

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
           I P  +L    +  ++EL  ++   +      P  L   P  G W  +LW +  ++ +++
Sbjct: 84  IGPATWLGISAVDGVRELAHQLGTGDLALQSAPEQLKSWPLVGPWLYDLWDQAYTNIRAV 143

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                 +L+      +  FA   G+  L + +S+        F +  G  +         
Sbjct: 144 LREVAPYLQPLAGPLL-SFAGDAGVGTLQFLVSVFVAG----FLFPHGPRLVAASRGFLF 198

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            + P   +    +    IR+   G+  +AI + L+ G  + LA VPS   L  I  ++++
Sbjct: 199 RIVPEQSEHFLGLAGATIRAVAQGVIGVAIVQALLAGIGFKLAAVPSAGLLAFIVLLLSI 258

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +  GA +    V I++    ++  A  L +   + +  +D  L+P ++G  +  P +  F
Sbjct: 259 VQIGAFLVLLPVIIWIWTAKDVTTALLLTV-FLVLVGFIDTMLKPLVMGRGLTTPTIVIF 317

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            G++GG    G++GLFIGP+++++   +    I 
Sbjct: 318 VGVIGGTLAHGIVGLFIGPIILSVAWEMMMAWIR 351


>gi|163801373|ref|ZP_02195272.1| nicotinate phosphoribosyltransferase [Vibrio sp. AND4]
 gi|159174862|gb|EDP59662.1| nicotinate phosphoribosyltransferase [Vibrio sp. AND4]
          Length = 386

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 62/349 (17%), Positives = 139/349 (39%), Gaps = 8/349 (2%)

Query: 9   QGIMRWMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +  +R  ++ I+L+  Y  +K F  PV+   II     PI               A    
Sbjct: 19  ESAIRIGLVIILLMFTYDIIKPFILPVIWGAIIAVALMPICKKLEKVYGGKRGLAATTIA 78

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKH 126
           +  + L + PL+ +    +      +  +   +         +++ P  G    E+WT  
Sbjct: 79  ILGIALLVTPLVMVSGSIVDGATHALEVLQNGDIKIPGPKPSVAEWPVVGDKLYEVWTLF 138

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            ++ +         +K+     +       G + L      I      +       S++ 
Sbjct: 139 STNLEKAIQTFMPQIKSGLTSLLGMVGGALGSLLLSILSLAIAAGFMTY-----SESLAS 193

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L ++         K  + ++   I+S  LG+  +A  + L++G+ +++ GVP+   L +
Sbjct: 194 GLSTIAVRTAGDNAKSWTTLIAATIKSVLLGVVGVAAIQALLIGAGFFIFGVPAAGLLTL 253

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +  I+ +    A ++   V  Y+ +  +   AT   +W  +   + +   +P L+G  + 
Sbjct: 254 VLMILCIAQLPALLAVLPVIGYMYMTKDTSTATMFTVW-VVVAALSENLFKPMLMGRGVS 312

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +P      G +GG+   G++GLF+G V++A+   ++   I   K  +++
Sbjct: 313 VPMPVILLGAIGGMLFYGIVGLFLGAVILAIWYELFVWWINIEKAQQQE 361


>gi|261250291|ref|ZP_05942867.1| predicted permease [Vibrio orientalis CIP 102891]
 gi|260939407|gb|EEX95393.1| predicted permease [Vibrio orientalis CIP 102891]
          Length = 363

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 74/347 (21%), Positives = 143/347 (41%), Gaps = 12/347 (3%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++   ++         ++ +   ++ A II    +PI+     +        ++++ + +
Sbjct: 13  VLIVALLAAGFACFLLVEPYINSIVMAFIISLLMFPIHEWLEKRLPNHHNITSLLSCIVL 72

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH- 129
             + +VPLLF+F   + +       V     +G    + + + P  +    L   +L   
Sbjct: 73  TFIVVVPLLFVFAAIVQQGSNFSQNVYQWVTNGG--IQAIFEHPWVVKGLSLINTYLPFD 130

Query: 130 ---PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
              PQ +      F  + G + +   A   G     + +    M+  LFF  RD   I  
Sbjct: 131 TIEPQEVAQKVAQFATSFGSNLVGISAKILGDAT-SFLMDFFLMLFVLFFLLRDHDKIIS 189

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +  +   L  +   K+   + +V +S  +G  + AI +G+  G   WLAG P  +  G 
Sbjct: 190 AMRHILP-LSRSQEDKLLDEIEQVSKSAVMGSFLTAIAQGVAGGLGMWLAGFPG-LFWGT 247

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV--GG 303
           +    + IP  G  + +   +IYL + G+   A  L +W    +  +D  LRP L+   G
Sbjct: 248 MMGFASFIPVVGTALIWIPAAIYLYVTGDTTWAIFLTVWSVAIVGSIDNLLRPLLMQGSG 307

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
              +  L  FF L+GG+   GL+GL  GP++ A+  V++       +
Sbjct: 308 NAGMSTLMIFFSLLGGLHLFGLIGLIYGPLIFAITMVLFNIYEEEFQ 354


>gi|332112088|gb|EGJ12064.1| hypothetical protein RBXJA2T_17117 [Rubrivivax benzoatilyticus JA2]
          Length = 359

 Score =  168 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 72/351 (20%), Positives = 137/351 (39%), Gaps = 8/351 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+   +         +  ++  SL+ LK F  P + A ++   +WP+     +    S  
Sbjct: 1   MKTADVTRTSFAVLFLAALVGCSLWILKPFVGPTIWATMVVVATWPLMLRVQAALGGSRA 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP--VPRWLSDIP-GGM 117
               + T+ ++ LF VPL       +     +                P WL  +P  G 
Sbjct: 61  AAVTVMTLLLVLLFAVPLALSIATLVENADRIAQTARDLATWRPSREAPAWLLALPMVGP 120

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
             +  W + ++      ++           +       FG + L + L+++   +     
Sbjct: 121 KLAVAWEQAVAAGLEGLVVRIQPYAGGFTRWFVGEIGDFGSVALQFVLTVVIAAV----M 176

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
           Y  G     Q+ +    L          +    IR   LG+ + A+ + ++ G    LAG
Sbjct: 177 YAQGEVFGAQVRAFAGRLAGERGVGAVTLAADAIRGVALGVGVTAVVQAVLGGVGLALAG 236

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           VP    L  +  ++ +   GA       + ++L  G++     L +W AI +  +D  LR
Sbjct: 237 VPLAGLLTALMFMLCIAQIGALPVLLPAAGWVLYGGDVGWGVFLLVWSAI-VGTLDNFLR 295

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           P L+     LP L  F G++GG+   GL+G+F+GPV++A+   + +  I  
Sbjct: 296 PVLIRLGADLPLLLIFAGVIGGLLAFGLVGIFVGPVVLAVGFTLLESWIGE 346


>gi|332176654|gb|AEE12344.1| protein of unknown function UPF0118 [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 429

 Score =  168 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 58/323 (17%), Positives = 115/323 (35%), Gaps = 19/323 (5%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
             + + VL AL I           + +K     + A + TV  +  F++PLL +    + 
Sbjct: 68  LPYMSGVLGALTIYVLLRGQMKWLVERKRWGRNWAASLLTVEAIFFFLIPLLGIVLMLID 127

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
                  +    N         +  +           +++                    
Sbjct: 128 LFSAFDPE--SLNVLTTQAQDVVKQVEERFGIELWSNENIQ---------------KLTS 170

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
           F              + L+   ++  L+F  R        ++ L         K +S   
Sbjct: 171 FSTSLVKGLLQGMSSFFLNAFIILFLLYFMLRGYDQFEAAVEELLP-FTECNKKTVSNET 229

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVS 266
             +++S  +G+ ++AI +G+     Y + GV + +   V+T    +IP  G  + +  ++
Sbjct: 230 ISIVKSNAIGIPLLAIVQGVFAYIGYLIFGVDNALLFAVLTTFTTIIPVLGTMLVWIPIA 289

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           + + I G+  NA  L L+G I +  VD   R  L      +  L T FG+  G+   G  
Sbjct: 290 VVMGINGDWLNAILLALYGFIVIGGVDNVARLLLQKQMANIHPLITIFGVFIGLSLFGFW 349

Query: 327 GLFIGPVLMALIAVIWKESIMAI 349
           G+  GP++++LI +         
Sbjct: 350 GVIFGPLILSLIVLFINLYRHDF 372


>gi|257093350|ref|YP_003166991.1| hypothetical protein CAP2UW1_1757 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045874|gb|ACV35062.1| protein of unknown function UPF0118 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 377

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 65/347 (18%), Positives = 139/347 (40%), Gaps = 8/347 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +++ ++L+  +F   F   +L ALI+  T +P++     +        + +  +  + + 
Sbjct: 28  LVLALVLLCYHFFSPFLTMMLWALILAVTIYPLHEMLAGRIGGKQGLASTLIVLVAIAVI 87

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
           + P + L       + ELV  V             ++  P  G     +W++      +L
Sbjct: 88  VTPTIMLASQFGDSVHELVKGVRDNTLEVPAPSEKVAAWPVVGKKVHAIWSQAHDDLPAL 147

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
               +  +       +   A   G   L + L+ I   I + +    G S +Q + ++ E
Sbjct: 148 VKSMQPKIGELATKALGIVAG-LGGGLLMFVLAFIVAGIMMAY----GESGAQAMQAIFE 202

Query: 194 HLFPA-YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            +F     K+ + +    +R+   G+  IA  + L++G +  +A VP    L VI  ++ 
Sbjct: 203 RVFGLARGKEFTNLSSATVRAVASGVIGIACIQALLIGVSLMIASVPFAGLLAVIVLVLG 262

Query: 253 MIPGGAPISFTAVSIYLLIKGNI-FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           +    A +    V  ++   G+        +    +   + D  L+P ++G  +  P   
Sbjct: 263 VAQLPALLVTLPVIGWIWASGDYATVPAAAYSVLLVVGGMADNVLKPIMLGRGVDAPMPV 322

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
              G +GG+ T G+LG+FIG   +AL   I+   +    E   + ++
Sbjct: 323 ILIGALGGMATSGILGMFIGATALALGYQIFMRWVDDNPERVRQQAA 369


>gi|170690238|ref|ZP_02881405.1| protein of unknown function UPF0118 [Burkholderia graminis C4D1M]
 gi|170144673|gb|EDT12834.1| protein of unknown function UPF0118 [Burkholderia graminis C4D1M]
          Length = 381

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 142/346 (41%), Gaps = 6/346 (1%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  + +     +  F   ++  LI+  T +P++             +A +  +    + 
Sbjct: 24  LITVLAVFCFRIVVPFLDLMVWGLILAITLYPLHIRLRRSLRNRDGLVATLIVLVAFGVI 83

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
           +VP   L       ++ +++ V   +    P    ++  P  G    + W +  +    L
Sbjct: 84  LVPSYLLGVAVADSIEHVMAVVKSGSFRIPPPAESVAGWPLVGQHVHDFWQQASTDLTGL 143

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                  LK  G   +       G   L + +++I   I + +  R G   +QQ+ S   
Sbjct: 144 AQRFAPQLKEAGRALLGTVTG-LGAGLLIFFIALIVAGILMAYGER-GHRSAQQIASRIS 201

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
              P    +I+ +    IR+   G+  IA  + L++G  + + G+P+   L +   ++ +
Sbjct: 202 --GPERGAQITDLCTATIRAVAQGVVGIAFIQMLLIGGGFVVMGIPAAGLLALGVLLIGI 259

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +   A +    V  ++++   +  AT  F        + D  L+P L+G  + +P     
Sbjct: 260 MQLPATLITLPVIAFVMLTEGVSTATIAFSAYVFVAGLADNVLKPLLLGRGVAVPMPVVL 319

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            G +GG+ T G++GLFIGPV++A+   ++   +   +   E+I  N
Sbjct: 320 IGALGGMVTGGVIGLFIGPVMLAVGYELFWRWVKD-QPQAERIDEN 364


>gi|253700636|ref|YP_003021825.1| hypothetical protein GM21_2015 [Geobacter sp. M21]
 gi|251775486|gb|ACT18067.1| protein of unknown function UPF0118 [Geobacter sp. M21]
          Length = 354

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 77/345 (22%), Positives = 140/345 (40%), Gaps = 7/345 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I  +  +  I   + F      P+  ALIIG  + P Y   +++  +     + +  ++V
Sbjct: 10  IAAFFTVAAIAAIVLFAAPILKPLAWALIIGIATMPHYQRILNRFPDRPGRASGLMLLAV 69

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMWASELWTKHLSH 129
               ++P  +L     +   E   ++    Q         LS IP       L  +    
Sbjct: 70  AVCLVLPASWLVITAAVNAPEWYRQLEQMIQEVTRTSSGALSQIPYYDRIMSLVERFGID 129

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             ++       + ++G   I   A+       D+  +++  +  LFF YRDG        
Sbjct: 130 LGNIGGK----IASSGSTVILNAATNMVRNLFDFIFTLLVALFLLFFIYRDGERAVALCI 185

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                  P   +  +  +  +  +  +G  +    +G++ G  YW+AGVP+ V    +TA
Sbjct: 186 GKLAP-NPRKAQHYATQIRSITTAVAVGTILTCCTQGVIAGLGYWVAGVPAPVFFAALTA 244

Query: 250 IMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I A+IP  G  I +  +     + G+   A  L LW    +   D  +RP  +G    + 
Sbjct: 245 IAALIPVVGTAIIWVPIVALTAVTGSYLTALLLALWCVFFVGFSDNAIRPLAIGAASDIS 304

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L    G + GV  MGLLGL IGPV+ A++  +W +++ A  + +
Sbjct: 305 VLAVVTGALCGVVMMGLLGLIIGPVIFAVLFSMWDDAVSAAGDTE 349


>gi|226946440|ref|YP_002801513.1| hypothetical protein Avin_44170 [Azotobacter vinelandii DJ]
 gi|226721367|gb|ACO80538.1| Conserved hypothetical protein [Azotobacter vinelandii DJ]
          Length = 368

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 64/334 (19%), Positives = 138/334 (41%), Gaps = 7/334 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           ++  + +      + F   +L ++I+    +P+     ++        A +  V  + + 
Sbjct: 24  LVAVLTIYCYLVFRPFLELMLWSMILAVMLYPLQRRLAARLGHHEGRTASLIVVVGLLIL 83

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQSL 133
           +VP+  L    +   ++++  V   + H  P    +++ P  G    + W +  S     
Sbjct: 84  MVPIYLLGTSLVDSAQQVMETVRSGSLHIPPPSESVANWPVIGQPVHDFWQQAASDLSGS 143

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                  L+   +  + + A   G  FL +  ++I   I + F    G    +    +  
Sbjct: 144 IEKYRPQLRELLLGLLGKIAG-IGTGFLLFIAALIIAGIIMAF----GELGHRSAHRIAV 198

Query: 194 HLF-PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            +  P   + +  +    IR+   G+  IA  + L++G  + L GVP    L +   ++ 
Sbjct: 199 RIVGPERGELLVELCTATIRTVAQGVLGIAFIQMLLVGVGFVLMGVPGAGLLALAVLLLG 258

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +I   A +    V +Y+         T +F   +I   +VD  L+P L+G  + +P    
Sbjct: 259 IIQVPATLITVPVIVYVFSSEGASLTTIVFAVYSILAGLVDNVLKPLLLGRGVDVPMPVV 318

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
             G +GG+   G+LGLFIGP+++A+   ++ + +
Sbjct: 319 LIGALGGMVASGILGLFIGPIVLAVGYRLFWQWV 352


>gi|119477618|ref|ZP_01617768.1| hypothetical protein GP2143_09155 [marine gamma proteobacterium
           HTCC2143]
 gi|119449121|gb|EAW30361.1| hypothetical protein GP2143_09155 [marine gamma proteobacterium
           HTCC2143]
          Length = 364

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 76/347 (21%), Positives = 142/347 (40%), Gaps = 8/347 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +L    I   ++  II++ +     FF  ++ ALI+    +P+  S   K   +S   A 
Sbjct: 16  VLTDVMIRFGVVTIIIVLCIQVFAPFFGIMMWALILAVALYPLNLSLAKKFNGNSGRAAA 75

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELW 123
           +  +  + L   P + L       + +L ++      H  P    ++++P  G   + +W
Sbjct: 76  LIVIIGLLLIGGPAVALGKSFTSHLLDLYTEFNSGKLHIQPPNSSVAELPLIGETLNRVW 135

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
           T      +      E  LK      +   AS  G     +  S++   I + +    G S
Sbjct: 136 TNAADDLEQTLKNVEPQLKELSKKALVIAASTTGE-VFSFFASMVIAGIMMAY----GRS 190

Query: 184 ISQQLDSLGEHL-FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            SQ +  + + +       K+  +    IRS   G+  +A  + L+LG+ +  AG+P   
Sbjct: 191 GSQAMLEILQRVSSEEKGGKLQALCVGTIRSVATGVIGVAFIQALLLGAGFIFAGIPGAG 250

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNAT-CLFLWGAIELFIVDKTLRPFLV 301
            LGVI  ++ ++   A +       YL   G+   A+   F        + D  L+P L+
Sbjct: 251 ILGVIVLVVGILQIPAALVTLPAIAYLWFGGDASTASNIAFTVYLFVAGLADNVLKPMLL 310

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           G  +  P      G +GG+   G++GLF+G VL+ +   I+ E +  
Sbjct: 311 GRGVDAPMPVVLLGALGGMVVAGIMGLFVGSVLLTVGYKIFMEWVKE 357


>gi|149189962|ref|ZP_01868241.1| hypothetical protein VSAK1_01632 [Vibrio shilonii AK1]
 gi|148836277|gb|EDL53235.1| hypothetical protein VSAK1_01632 [Vibrio shilonii AK1]
          Length = 378

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/348 (20%), Positives = 148/348 (42%), Gaps = 10/348 (2%)

Query: 9   QGIMRWMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +  +R  ++ I+L   Y  +K F  PVL   II     P+     S         A + +
Sbjct: 19  ESAIRIGLLVILLTFTYDIIKPFIIPVLWGSIIAVALLPLTKKLESSLGGKRGLAATLVS 78

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW-LSDIPG-GMWASELWTK 125
           +  + L ++P + +    + E     ++V+ + +  IP P   ++DIP  G     +W  
Sbjct: 79  LIGISLLVIPFVMVSGS-IYEGVAHTTEVIQSGEIKIPGPTSKVADIPVIGDKLYSIWNL 137

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             ++ +         +K     F+   AS  G       +  I  +     F      IS
Sbjct: 138 FATNMEKAIQQFLPEIK----GFLGTVASILGGALTS-LIMFIISLAIAGGFMAHAEKIS 192

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L+++         ++ + ++   IRS  LG+  +A  +  ++G+A ++  VP+   L 
Sbjct: 193 GALETVAVRAVGKKAEQWANLMAATIRSVLLGVVGVAFIQAAIIGAAMFVFKVPAAGLLT 252

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           + T I+ +    A +    V  Y+   G+  + T   +W A+   + D  L+P L+G  +
Sbjct: 253 LATLILCIAQLPALLIVAPVIFYVYSTGDGTSTTLFTIW-ALAGGLSDNILKPMLMGRGV 311

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            +P      G +GG+   G++GLF+G +++A+   ++   I   ++ +
Sbjct: 312 DVPMPIILIGAIGGMLFAGIIGLFLGAIILAIWYELFLFWINYEEQTE 359


>gi|317406579|gb|EFV86769.1| hypothetical protein HMPREF0005_05760 [Achromobacter xylosoxidans
           C54]
          Length = 368

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 75/364 (20%), Positives = 148/364 (40%), Gaps = 12/364 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILV-----SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK 55
           M      P  + R +++ +IL      SLY LK F   ++ A  I   +WP+  +   + 
Sbjct: 1   MNPNPRPPADLARNLLVVVILSALMIGSLYVLKPFLFGLIWATTIVVATWPVMLAVQRRC 60

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV-LANQHGIPVPRWLSDIP 114
                   V   + ++ + ++PL        L    +++ +  L +   +  P W+  IP
Sbjct: 61  GGRRWLATVAMLIVLLVVIVLPLYQAISTLALHGGAIMTAIKGLPDYALMAPPGWVRGIP 120

Query: 115 -GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
            GG   +  W           +       T    ++   A+  G+  +   ++I+   I 
Sbjct: 121 LGGERIAHEWQALADAGAGGLLARLEPYITMAAKWLLSNAAIVGVFVMHMLITIVIAGI- 179

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
               Y  G   +  +      L         R+    IR+  LG+ + A+ +  + G   
Sbjct: 180 ---LYSQGDVAANFMQRFANRLAGHRGVAAIRLAGLSIRAVALGIVVTAVVQSALGGLGL 236

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
           W+AGVP+   +  +  ++ +   G  +      I+L  + ++  A  L L  A+ + ++D
Sbjct: 237 WIAGVPAAGIITALMLMLCLAQLGPFLPLLGGVIWLF-QNDMKVAAVLLLVWAVLVTMLD 295

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             LRP L+   + L  L    G++GG+   G++GLFIGPV++A+ + + K  +  +    
Sbjct: 296 NLLRPLLIKRGVNLSMLLILAGVLGGMFAFGIVGLFIGPVILAVTSTLLKAWVDEVPPPA 355

Query: 354 EKIS 357
              S
Sbjct: 356 ADAS 359


>gi|261251647|ref|ZP_05944221.1| putative membrane protein [Vibrio orientalis CIP 102891]
 gi|260938520|gb|EEX94508.1| putative membrane protein [Vibrio orientalis CIP 102891]
          Length = 374

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 59/346 (17%), Positives = 139/346 (40%), Gaps = 7/346 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I+ +++ +   +K F  PV+   II     P+     S         A    ++ + L 
Sbjct: 26  LIVILLMFTYDIIKPFILPVIWGAIIAVALMPVCQKLESLYGGKRGLAATTIALAGIALL 85

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
           + PL+ +    +      +  +   N         +++ P  G    E+W+   ++ +  
Sbjct: 86  VTPLVMVSGSIVDGSTHALHVLQEGNIKIPGPQPSVAEWPLVGEKLHEVWSLFANNLEKA 145

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                  +K+     +    +  G + L      I      +       S+S  L ++  
Sbjct: 146 IQTFMPQIKSALTYLLGMVGNVLGSLLLSILSLAIAAGFMTY-----SKSLSAGLTTIAV 200

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            +     +  + ++   I+S  LG+  +A  + L++G+ +++ G+P    L +I  I+ +
Sbjct: 201 RVAGDNAQSWASMIAATIKSVLLGVIGVAAIQSLLIGAGFFVFGIPGAGILTLILMILCI 260

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
               A +    +  Y+ +  +   AT   +W  +   + +   +P L+G  + +P     
Sbjct: 261 AQLPALLVVLPIVGYMYMTQDTTTATLFTVW-VVVAALSENIFKPMLMGRGVDIPMPVIL 319

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            G +GG+   G++GLF+G V++A+   ++   +   K  +EK +  
Sbjct: 320 LGAIGGMLIYGIVGLFLGAVILAIWYELFVWWLNIEKAQQEKAAKK 365


>gi|253997450|ref|YP_003049514.1| hypothetical protein Mmol_2085 [Methylotenera mobilis JLW8]
 gi|253984129|gb|ACT48987.1| protein of unknown function UPF0118 [Methylotenera mobilis JLW8]
          Length = 351

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 82/355 (23%), Positives = 164/355 (46%), Gaps = 8/355 (2%)

Query: 5   MLNPQGIMRWM-IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           M+N   I R   I  +I+  ++ L  F A +L A II   +WP+Y        +     A
Sbjct: 1   MINTNQIARIASISLLIVGCVFVLYPFMAAMLFAAIICVFTWPLYQRVWLLFGKRDMLAA 60

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV-PRWLSDIPG-GMWASE 121
            + T+ ++   I+P+ +L          ++ +     Q   PV P WL ++P  G   +E
Sbjct: 61  AMMTLLLLFAMIMPMAYLAANLADSATLMLDEAQAVLQSMQPVAPTWLKNLPIIGESLAE 120

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            W + ++  + L  L   + +      I  F  +   + +   + ++ ++   FFFYRDG
Sbjct: 121 SWQRVMASHEELMHLLNQYAEP-----IRVFLLKVVQMVMGGFVQLVLVVFVAFFFYRDG 175

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   + S+   L     +++  +    ++   LG+   A+ +  V    +WLAG P+ 
Sbjct: 176 TKLVAAVTSMVRRLGGELGQEMLVLSCNTVKGVMLGVFGTALAQASVGLFGFWLAGAPAP 235

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           + L + T  +++IP G P+ +   S++L   G+   A  L ++G + + +VD  ++P L+
Sbjct: 236 LLLALATFFLSVIPVGPPLVWGGASLWLFNHGDQGWAIFLLVYGLLVISMVDNIVKPILI 295

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
                LP L    G++GG+   G +G+F+GP L+A+   +    +    +  +++
Sbjct: 296 SHSSHLPLLLVVLGVLGGILAFGFIGIFLGPTLLAVGLTLVSHWVTLQNKRADEV 350


>gi|296447817|ref|ZP_06889730.1| protein of unknown function UPF0118 [Methylosinus trichosporium
           OB3b]
 gi|296254676|gb|EFH01790.1| protein of unknown function UPF0118 [Methylosinus trichosporium
           OB3b]
          Length = 396

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 66/351 (18%), Positives = 139/351 (39%), Gaps = 7/351 (1%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           +ML    +    +  +   S   ++ F A V  + I+    +P++    +         A
Sbjct: 16  SMLIELIVRLGALAALAYWSFQLVQPFLAIVTWSAILTVALYPVFEWLATALGGRRKLAA 75

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASEL 122
            + T+  + + I P  +L    +  ++ L +++        P P  L  +P  G  A + 
Sbjct: 76  TLITLVGLLVVIGPATWLGLGVVDGLRSLAARIDNGGLWVPPPPESLRSLPFVGQSAFDF 135

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           W    ++ +S        LK  G +F        G     + LS+I       F +  G 
Sbjct: 136 WELASTNLRSAVAQIAPSLKPLG-EFALDATKNAGTGAFKFLLSVIIAG----FMFAPGP 190

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           ++ + + +    +     +    +    IR+   G+  +++ +  V G    LAG P   
Sbjct: 191 ALVRAIKTAAIRIDSKRAEHFVGLAGSTIRTVSRGVIGVSLLQAAVAGLGLQLAGAPGAS 250

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L +   ++A+I  G  +      I+            LF    + + +VD  L+P ++ 
Sbjct: 251 LLTLCILVLAIIQIGPMLIVVPSIIWSW-TELPGIPAFLFTACMLTVTLVDNVLKPLVIA 309

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             +  P L    G++GGV   G++GLF+GPV++A+   +    + + + ++
Sbjct: 310 RGLTTPLLVIVVGVIGGVLAHGIIGLFVGPVVLAVAWELLGAWLGSAEPSE 360


>gi|289548782|ref|YP_003473770.1| hypothetical protein Thal_1011 [Thermocrinis albus DSM 14484]
 gi|289182399|gb|ADC89643.1| protein of unknown function UPF0118 [Thermocrinis albus DSM 14484]
          Length = 353

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 72/346 (20%), Positives = 146/346 (42%), Gaps = 6/346 (1%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +    +++ LY ++ F  PVL A++      P+ +  + +  +S    A +  V  +
Sbjct: 11  ILVLTFLFLMLVLYIIRPFIVPVLWAVVFTLALHPL-NHLLRRYVKSRFLSAFLLVVLTL 69

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L ++P+ FL +  + +   +V+ +V   Q+       L  +  G        + L +  
Sbjct: 70  LLIVIPVSFLGFMLVEQTLHMVNYLVSFAQNHTY--EELISLLKGHPLFSTVQQWLDYLG 127

Query: 132 SLKILSETFLKTN-GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           + ++             ++ ++ S                +I LFF  RDG         
Sbjct: 128 TQQVRDVFISGVQRVSQWLLQWISSLIGTSGVILFKSFVFLITLFFLLRDGDRFLDFAKR 187

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
               + P     I   V + I +T  G   +A+ +G++    Y++AG    V LGV T  
Sbjct: 188 FLP-IDPHDTDMILYTVYRTILATVYGTVGVAVLQGILSFVGYYVAGFDYAVLLGVATFF 246

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            + +P  G    +   S+YLL++G +     L ++  + +  +D  LRPF++   + LP+
Sbjct: 247 ASFVPPFGTASVWFPSSVYLLLQGKMTEGISLLIYSFLVISSLDNFLRPFIMKFGVPLPY 306

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +  FF  +GG+   G +GLFIGP++ + +  +         +  +K
Sbjct: 307 VVLFFSTLGGLAAFGFVGLFIGPMIFSTMFSLLIIYERRFLKASDK 352


>gi|94969196|ref|YP_591244.1| hypothetical protein Acid345_2169 [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551246|gb|ABF41170.1| protein of unknown function UPF0118 [Candidatus Koribacter
           versatilis Ellin345]
          Length = 354

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 57/336 (16%), Positives = 125/336 (37%), Gaps = 8/336 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  + L     LK F   +   +II    +P Y    +         AV+ T+ ++ L 
Sbjct: 26  LIALLALTCFVILKAFIPLLAWGVIIATAGYPGYRKLAAALGGREKLAAVLCTLILLSLI 85

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
           ++P + L        + + S+V   N    P P  +   P  G   +++WT   +     
Sbjct: 86  VIPAVLLAGTLTDGARSIASQVQSGNFRIPPPPAKVQGWPLIGKPLNKVWTTASTDATQA 145

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                  ++      +       G       L  I  I+   F        ++    +  
Sbjct: 146 LNKVSPVIQKYAPTLL-----SAGAKLGGTLLQFILSIVLAGFLLASSRGNAEFSQKIFR 200

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            +F     +   +    +RS   G+  +A+ + ++    + + G+P      ++   +A 
Sbjct: 201 RIFREKGDEFETLTANTVRSVTNGIVGVALIQTILASLGFLVVGLPGAGMWSLL-FFVAA 259

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +     +       +     +   A    +W    + ++D  L+P L+G   ++P L  F
Sbjct: 260 VLQVGVVVLLPAVAFAFTITSTTPAVIFLVWCMF-VGVIDNVLKPMLLGRGNQVPTLVVF 318

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            G++GG   MG +GLFIG +++++   ++   +  +
Sbjct: 319 LGVIGGFIAMGTIGLFIGAIILSVGYKLFLIWLEDV 354


>gi|113971076|ref|YP_734869.1| hypothetical protein Shewmr4_2741 [Shewanella sp. MR-4]
 gi|113885760|gb|ABI39812.1| protein of unknown function UPF0118 [Shewanella sp. MR-4]
          Length = 369

 Score =  166 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 68/348 (19%), Positives = 135/348 (38%), Gaps = 8/348 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           M++ +          F   +L A+I+    +P +     +  +     A +  V  + + 
Sbjct: 26  MLLALASFCYTIFSPFLNIMLWAVILAVVIYPFHQRIAKRLNDKQGRAATLLIVVGLMVL 85

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
           ++P + +       M  LV +V             +++IP  G    ++W K  +   SL
Sbjct: 86  VLPTITMVSSMTDNMGSLVERVNQNTLEVPAPKESIANIPFVGAKIYDVWQKASTDLPSL 145

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
               +  L       I   AS  G + +    S I   I + +    G + +Q    +  
Sbjct: 146 VKSLQPHLGEVTKQVIHALASISGSLLMSMF-SFIIAGIMMAY----GRAGAQSSARIAT 200

Query: 194 HLF-PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            +  P    K+  I    IR+  LG+  +A  + L++G    LAG+P      ++  ++ 
Sbjct: 201 RIAGPERGAKLINICSTTIRAVALGVIGVAFIQALLVGIVMTLAGIPLVGIFFILVLVLG 260

Query: 253 MIPGGAPISFTAVSIYLLIKGNI-FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           +    A +       Y+ + G+     + ++    I    VD  L+P L+G  +  P   
Sbjct: 261 IAQVPALLVTLPAIAYIWMTGDNGTVGSIIYTVLLILAGAVDNVLKPILLGRGVDAPMPV 320

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              G +GG+ T G+LG+FIG  L+++   I+   +    E   +   +
Sbjct: 321 VLIGALGGMATSGILGMFIGATLLSIGYRIFMAWVDEGLEEPLREQDD 368


>gi|163782562|ref|ZP_02177559.1| hypothetical protein HG1285_16800 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882135|gb|EDP75642.1| hypothetical protein HG1285_16800 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 355

 Score =  166 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 65/337 (19%), Positives = 145/337 (43%), Gaps = 8/337 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +++F I  ++  L  F  P+L A++IG   +P++           T  A++ ++ V   
Sbjct: 13  LLVLFFIFAAVLMLLPFAVPILWAVVIGIVLYPLHRYIEKVVRNR-TLSALLMSLIVFLF 71

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            IVPL  +    + ++ +   +V++  Q        L  +       + + +     + +
Sbjct: 72  IIVPLSVVSVLVLQQLVDATQRVMMYLQSHSYQ-ELLETLGKSPVVKDYFERFSPVMEFV 130

Query: 134 KILSETFLKTNGID----FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
           +      L  + ++    F+     +   I       I   ++  FF  RDG  I ++++
Sbjct: 131 QKEEFRQLIADSLNRVLKFLGDKLGQLAFIAGRNLFYIFVFLLTFFFILRDGPGILRRVE 190

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L   +     + +   + + I +   G    A+ + +    AY + G+   +   V+T 
Sbjct: 191 RLIP-MNDEDLESVMATMYRTILAVVYGSVGTALLQSIFAFFAYSVVGIRFALLWSVLTF 249

Query: 250 IMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
             A IP  GA   +  +++Y  I+   + A  L  WG + +  +D  +RP ++   +++P
Sbjct: 250 FAAFIPPFGASAVWFPLAVYSFIEFGTWQAAFLGAWGVLVISSMDNFVRPLIIKQGVQIP 309

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           ++  FF  +GG+   G +GLF+GP++   +  ++K  
Sbjct: 310 YVVLFFATIGGLLKFGFIGLFLGPIIFTTLFALFKIY 346


>gi|113868389|ref|YP_726878.1| permease [Ralstonia eutropha H16]
 gi|113527165|emb|CAJ93510.1| predicted permease [Ralstonia eutropha H16]
          Length = 367

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 64/347 (18%), Positives = 142/347 (40%), Gaps = 7/347 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  + +      + F   ++ ++I+  T +P+      +        A +  ++ + + 
Sbjct: 24  LIAVLAIFCFRIFRPFLDLIVWSVILAVTIYPLQVRLRRRLGNKDGRAATLIVLAAIAII 83

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
            +P   L    +  M+  ++ V     H  P    ++  P  G    +LW +  S   S+
Sbjct: 84  ALPAYLLGAAMIDSMENAIAIVKSEGIHIPPPHESVASWPLVGQRLYDLWLQAASDLASV 143

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                  +K   +  +   A+  G   L +  ++I   I + +    G + ++    +  
Sbjct: 144 VQTLAPQIKEISLAVLAA-AAGIGKGLLIFVFALIIGGIFMAY----GEAGNRSTVQIAS 198

Query: 194 HLFP-AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            +F     ++I+ +    IR+   G+  IA  + L++G  + + GVP+   L +   ++ 
Sbjct: 199 RIFGLERGQRIATLCTATIRAVAQGVVGIAFIQMLLIGIGFVIKGVPAAGVLAMAVLLLG 258

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +    A +    V IY+        AT +F        + D  L+P L+G  + +P    
Sbjct: 259 IAQLPATLITVPVIIYVFATEGASVATIVFAIYVFVAGLADNVLKPLLLGRGVDVPMPVV 318

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             G +GG+ T G++GLFIGPV++A+   ++ + +       +  +  
Sbjct: 319 LIGALGGMVTGGVIGLFIGPVVLAVGYQLFWQWVEDPPPQADPGNQQ 365


>gi|172038736|ref|YP_001805237.1| hypothetical protein cce_3823 [Cyanothece sp. ATCC 51142]
 gi|171700190|gb|ACB53171.1| hypothetical protein cce_3823 [Cyanothece sp. ATCC 51142]
          Length = 374

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 65/342 (19%), Positives = 145/342 (42%), Gaps = 7/342 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +    I  ++I  ++      ++ F   +L  +I+    +P++    ++         V+
Sbjct: 20  IVDLLIRLFLIGLLLAWCFLLIRPFLGILLWGIILAIAVFPVFLWLKNRLGGRRKLAGVL 79

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWT 124
             +  + + I P+ F+    +   +     +   +    P P  + + P  G +   +WT
Sbjct: 80  LILFGIAVIIGPVSFVATIFVGNAQTFADNLTSGSLKVPPPPEGVENWPIIGNYVDRMWT 139

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
              ++  S+    +  L+T   + +  FA   G++ L + LSII   I       +   +
Sbjct: 140 SASNNLISVLSKFQPQLETIAKNLLF-FAGNMGLVLLKFILSIIVAGILT----INSKQL 194

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           ++++  +   + P   ++  ++    IR    G+  +++ + L++G  + +AG+P    L
Sbjct: 195 NRRIKRIFIRVTPQQGEEFLQLATATIRGVTRGIIGVSLIQSLLVGIGFTVAGIPLSGLL 254

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            V+  ++ ++  G         I+         A  L +W  I   ++D  LRP  +   
Sbjct: 255 TVLCLVLCILQIGLGPVVFPSIIFAWYTMGTLKALLLSIW-LIFCTLIDNILRPIFMSQG 313

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           + +P L  F G+ GG    G+LGLFIGPV+++L   +    +
Sbjct: 314 VSVPILVIFIGVFGGSLLHGILGLFIGPVVLSLGYELALAWV 355


>gi|110598136|ref|ZP_01386414.1| Protein of unknown function UPF0118 [Chlorobium ferrooxidans DSM
           13031]
 gi|110340268|gb|EAT58765.1| Protein of unknown function UPF0118 [Chlorobium ferrooxidans DSM
           13031]
          Length = 359

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 69/340 (20%), Positives = 140/340 (41%), Gaps = 6/340 (1%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
            +    ++ FF  +  A I    + P+++ F      S +  A +  V+++ +  +PL  
Sbjct: 20  ALFFAMIRYFFMAIFLAAIFSALAMPLFNRFNRWFRGSQSLSAAMTIVTLLLVVFLPLAA 79

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L      +   L S  +   Q  I  P            +  +   L+  +   +     
Sbjct: 80  LLGVVASQAVRLSSIALPLIQQQIKEPAVFDQ----QLRTLPFYDELALYREEILKKAGE 135

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           L +     +    S F +  ++    +   +  +FFF +DG     ++ +    L  +  
Sbjct: 136 LASQAGSLLFSSISSFTVSAVNDLFLLFIFLYTMFFFLKDGQLFLDRILACLP-LTKSDE 194

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
            ++      V R+T  G  ++ + +G + G A   AG+ S +  G + ++++++P  G P
Sbjct: 195 YRLLDRFLSVTRATLKGTLVVGVVQGSLAGLALHFAGIESAIFWGTVMSVISVVPVLGPP 254

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           I +    IYL   G    A  + L+ +I +  +D  +RP L+G   ++  L  FF  +GG
Sbjct: 255 IVWVPAVIYLAATGQYPQAIGVALFCSIVVGQIDNIIRPILIGRDTRMHELLIFFSTLGG 314

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +   GL G  +GP++ AL   +W+    +  E   +I   
Sbjct: 315 IGFFGLFGFILGPIIAALFVTLWEMYAESFSEFLAEIKGE 354


>gi|116748040|ref|YP_844727.1| hypothetical protein Sfum_0593 [Syntrophobacter fumaroxidans MPOB]
 gi|116697104|gb|ABK16292.1| protein of unknown function UPF0118 [Syntrophobacter fumaroxidans
           MPOB]
          Length = 376

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 66/354 (18%), Positives = 139/354 (39%), Gaps = 6/354 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              I   +I+ + ++    L  F   ++ ALI+  T +P++     +        A +  
Sbjct: 21  DILIRAGLILVLAMLCYQVLSPFLTLMVWALILAVTIFPLHQFLAGRIGGRQGLAAALLV 80

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKH 126
           +  + L +VP   L       + +LV+ V   +         +   P  G    ++W++ 
Sbjct: 81  IVGLMLIVVPTAMLMSSLGDSVHQLVNDVQNNSLKIPAPRPGVEGWPVVGKKVHDIWSRA 140

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            +   +L    +  +       +   A   G   L +  S I   I + F    G     
Sbjct: 141 YADLPALVQSMQPKIGELAKTALGFVAGIAG-GLLQFIASFIVAGIIMAFGQSGGRGSLA 199

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
             + +          + +R+    IR+   G+  +A  + +++G A  ++GVP   AL +
Sbjct: 200 IFERIVGR---ERGGEFARLSTSTIRAVSQGVIGVAFIQAIIVGLALLVSGVPWAGALAL 256

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF-LWGAIELFIVDKTLRPFLVGGPI 305
           I  ++ +    A I      +Y+ + G+  NA  +      I   + D  L+P ++G  +
Sbjct: 257 IVLVLGIAQIPALIVTLPAIVYIWMSGHYGNAAAVAYTVVLILSGMTDNVLKPLMLGRGV 316

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             P      G +GG+ T G+LG+F+G  L+ L   ++   + A  +  +  + +
Sbjct: 317 DAPMPVILLGALGGMGTAGILGMFVGATLLTLGYQVFMGWVAANPDAGQAQAES 370


>gi|150376865|ref|YP_001313461.1| hypothetical protein Smed_4731 [Sinorhizobium medicae WSM419]
 gi|150031412|gb|ABR63528.1| protein of unknown function UPF0118 [Sinorhizobium medicae WSM419]
          Length = 359

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 69/332 (20%), Positives = 126/332 (37%), Gaps = 13/332 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
             +    F   +  AL++     P++    S+        A       + +  VPL F+ 
Sbjct: 39  CTFLTVPFLPALTWALVLAVMFQPLHRRVKSRFR-YPDAAAAATVAIAVFVVAVPLTFMA 97

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + E  +    +  A + G      L++ P    A       L             + 
Sbjct: 98  ERLVNEAAKGAKIIEEALRSGTWR-DALANYPRLAPAVVWIETQLDLAG---------IA 147

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            +   ++  F++ F    +   +  +     LF+F RDG  +   L      L      +
Sbjct: 148 GSATSWLTNFSASFVRGSVAQIIDAVLTFYFLFYFMRDGRQVLAALKEHSP-LSEQDMNR 206

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPIS 261
           +   V + + +   G   +A  +G + G  +WL G+P+ V  G+   ++A++P  GA I 
Sbjct: 207 LFTRVHETVHAVVFGTVAVAAVQGAMGGLMFWLLGLPAPVVWGLAMGLLAVVPVLGAFIV 266

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +   ++ L + G    A  L  WGA  +  +D  L P  VG  +KL  L  F  ++GG+ 
Sbjct: 267 WLPAALSLALSGEWGKALILAGWGAGVVATIDNLLYPIFVGDRLKLHTLTAFMSMIGGII 326

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             G  GL IGPV   +  ++         E +
Sbjct: 327 VFGSAGLVIGPVAFTVTLLLLDIWRQHNTEPR 358


>gi|28901438|ref|NP_801093.1| hypothetical protein VPA1583 [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839443|ref|ZP_01992110.1| hipothetical membrane protein [Vibrio parahaemolyticus AQ3810]
 gi|260362991|ref|ZP_05775860.1| hipothetical membrane protein [Vibrio parahaemolyticus K5030]
 gi|260880278|ref|ZP_05892633.1| hipothetical membrane protein [Vibrio parahaemolyticus AN-5034]
 gi|260896661|ref|ZP_05905157.1| hipothetical membrane protein [Vibrio parahaemolyticus Peru-466]
 gi|28809985|dbj|BAC62926.1| putative membrane protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747032|gb|EDM58020.1| hipothetical membrane protein [Vibrio parahaemolyticus AQ3810]
 gi|308085424|gb|EFO35119.1| hipothetical membrane protein [Vibrio parahaemolyticus Peru-466]
 gi|308091913|gb|EFO41608.1| hipothetical membrane protein [Vibrio parahaemolyticus AN-5034]
 gi|308112310|gb|EFO49850.1| hipothetical membrane protein [Vibrio parahaemolyticus K5030]
          Length = 381

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 62/348 (17%), Positives = 139/348 (39%), Gaps = 8/348 (2%)

Query: 9   QGIMRWMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +  +R  ++F++L+  Y  ++ F  PV+   II     P+               A    
Sbjct: 19  ESAIRIGLIFVLLMFTYDIIRPFILPVIWGAIIAVALLPLTKKLQRAYGGRRGLAATTIV 78

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKH 126
           +  + L + PL+ +    +      +  +             ++D P  G    E+WT  
Sbjct: 79  LLGIALLVTPLVMVSGSIVDGATHALDVLQNGQVKIPGPKASVADWPLVGDKLYEVWTLF 138

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            ++ +         +K+     +       G + L      I      +       S++ 
Sbjct: 139 ATNLEQAIQTFMPQIKSALTSLLGMVGGVLGSLLLSILSLAIAAGFMTY-----SESLAS 193

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L ++         K  + ++   I+S  LG+  +A  + L++G+ +++ GVP+   L +
Sbjct: 194 GLQTIAIRTAGENAKSWTTLIAATIKSVLLGVVGVAAIQALLIGAGFFVFGVPAAGLLTL 253

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           I  I+ +    A ++   V  Y+ +  +   AT   +W A+   + +  L+P  +G  + 
Sbjct: 254 ILMILCIAQLPALLAVLPVIGYMYMTQDSTTATMFTVW-AVVGALSENLLKPMFMGRGVD 312

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           +P      G +GG+   G++GLF+G V++A+   ++   +   K  ++
Sbjct: 313 VPMPVILLGAIGGMLFYGIVGLFLGAVILAIWYELFVWWLSIEKAQQQ 360


>gi|21672406|ref|NP_660473.1| putative inner membrane protein [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25091630|sp|Q8KA12|Y115_BUCAP RecName: Full=UPF0118 membrane protein BUsg_115
 gi|21623015|gb|AAM67684.1| hypothetical 39.8 kDa protein [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 364

 Score =  165 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 76/345 (22%), Positives = 136/345 (39%), Gaps = 7/345 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L+   +    I+ I   S   ++ F      A +I   +WP+                + 
Sbjct: 10  LSQFILSLIFIIAISATSFLIIQPFILGFSWASMIVIATWPLMLKMQKFLGGKRLVAVIG 69

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWT 124
             + ++ LFI+P++FL    +     L+     +N    P   WL DIP  G      + 
Sbjct: 70  MIIILLLLFIIPIVFLVNSLIKTSIPLIHWF-SSNNLEFPELIWLQDIPIIGKKIFISYQ 128

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           + L       I           +F    A   G+  +   L ++F ++     Y +G  I
Sbjct: 129 ELLDSDGGELIREIRPYMGRTTEFFIIQAKNCGLFIMHLTLMLLFSLLL----YWNGEKI 184

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           S  +      L     + I  +  + +R+  LG+ + A+ + ++ G    ++GVP    L
Sbjct: 185 SNSIRQFASRLSSRNGEAIVLLSVQAVRAVALGVVVTALIQAVLSGIGLLISGVPYWTLL 244

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            ++     +I  G         I+L    N    T L +W    +FI+D  LRPF +   
Sbjct: 245 MILIVFSCLIQLGPLPILIPSVIWLYWNSNTTWGTLLLIWSCF-VFILDNILRPFFIRIG 303

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
             LP      G++GG+   G++GLFIGPV++ ++  +    I  I
Sbjct: 304 SDLPTFLILLGVIGGLLAFGMIGLFIGPVVLVILYRLIVSWIYGI 348


>gi|158521116|ref|YP_001528986.1| hypothetical protein Dole_1102 [Desulfococcus oleovorans Hxd3]
 gi|158509942|gb|ABW66909.1| protein of unknown function UPF0118 [Desulfococcus oleovorans Hxd3]
          Length = 365

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 65/332 (19%), Positives = 129/332 (38%), Gaps = 8/332 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           S   +  +  P+L ALI    + P+Y  F+ K +      A +  + +  + ++P + + 
Sbjct: 29  SYKMIAPYLDPILLALIFAAMANPVYQWFVKKTKGRENLSAGLVCLLLTLVIVIPCMIML 88

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL- 141
              + +  + V  +      G      L D P    A +   ++L       +  +    
Sbjct: 89  TVIIAQGIDSVGAINRWVAAGN--LEKLKDAPLVRTAVDFMQRYLPSSVLAGVDLQALAI 146

Query: 142 --KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
              +     +   +                MI   FF  +D   +   +  L   +   +
Sbjct: 147 KSSSAAGKLLVSQSGAILGNISMVVGKFFLMIFVFFFVLKDQQRLYDYILHLVP-MSAEH 205

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GA 258
              + + +  V RS  LG  + A+ +G   G A+ + G+P     G + A  ++IP  G 
Sbjct: 206 ETVLIQKMKDVSRSAVLGSFLTALAQGAAGGLAFAICGMPG-FFWGAVMAFASLIPVVGT 264

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            + +   + YLLI G I     L +W  + + ++D  LRP  + G   +  +  FF ++G
Sbjct: 265 ALVWVPAAAYLLISGKIGLGVFLIIWCVVVVGMIDNLLRPLFMRGGAGMSTVVIFFAILG 324

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           G+   GL+GL  GP++  +  V+     +   
Sbjct: 325 GIHLFGLIGLIYGPLIFGITMVMLYIYDLEFD 356


>gi|323139388|ref|ZP_08074439.1| protein of unknown function UPF0118 [Methylocystis sp. ATCC 49242]
 gi|322395381|gb|EFX97931.1| protein of unknown function UPF0118 [Methylocystis sp. ATCC 49242]
          Length = 368

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 66/349 (18%), Positives = 144/349 (41%), Gaps = 7/349 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R+       I   +I  +I  +   +  F   +  ++I+    +P+++   S+      
Sbjct: 19  LRDHNAIELAIRLSLIAILIYWTAVIVFPFAPIIAWSVIMAVALYPVFAWLSSRLGGRPR 78

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWA 119
             AV  T   + L + P+ +L    +     L+  V        P    + + P  G   
Sbjct: 79  LAAVALTCMSLVLVVGPVTWLGLDLIEASTGLIDSVNAGKLAVPPPVASVKEWPLIGQQL 138

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            + W+   ++ +S        LK  G   I    S  G+  L + LS++ M     F + 
Sbjct: 139 YDFWSLASTNMRSALAPLLPQLKPLGEKLIEAV-SSAGVGTLKFLLSVVVMG----FLFL 193

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
               +   +++L   +  A   +   +    IR+   G+  +++ + +V G+   LA VP
Sbjct: 194 YAEPLVAVVENLASRIDGAQGARFVALAGDTIRAVSRGVIGVSLLQAVVAGAGMTLAAVP 253

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               L ++  I+ ++  G  +    V+I+  +  +   A  L +     + + D  ++PF
Sbjct: 254 GASVLTLLVLILGIVQVGPGLVTVPVAIWAWLSLSPLPALGLTI-CLGAVSLSDALVKPF 312

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            +   +  P + TF G++GG+   G++GLF+GP+++A+   +    +  
Sbjct: 313 FLSRGLTTPMIVTFVGVIGGILAHGIIGLFVGPIVVAVAWNLADAWLHD 361


>gi|269960287|ref|ZP_06174661.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834898|gb|EEZ88983.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 383

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 58/342 (16%), Positives = 135/342 (39%), Gaps = 7/342 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I+ +++ +   +K F  PV+   II     PI               A    +  + L 
Sbjct: 26  LILVLLMFTYDIIKPFILPVIWGAIIAVALMPICKKLAKVYGGKRGLAATTIALLGIALL 85

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
           + PL+ +    +      +  +   +         +++ P  G    E+WT   ++ +  
Sbjct: 86  VTPLVMVSGSIVDGATHALDVLQSGDIKIPGPKPSVAEWPLVGDKLYEVWTLFATNLEKA 145

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                  +K      +       G + L      I      +       S++  L ++  
Sbjct: 146 IQTFMPQIKAGLTSLLGMVGGALGSLLLSIISLAIAAGFMTY-----SESLASGLKTIAV 200

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  K  + ++   I+S  LG+  +A  + L++G+ +++ GVP+   L ++  I+ +
Sbjct: 201 RTAGDNAKSWTTLIAATIKSVLLGVVGVAAIQALLIGAGFFIFGVPAAGLLTLVLMILCI 260

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
               A ++   V  Y+ +  +   AT   +W  +   + +   +P L+G  + +P     
Sbjct: 261 AQLPALLAVLPVVGYMYMTQDTSTATMFTVW-VVVAALSENLFKPMLMGRGVDVPMPVIL 319

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            G +GG+   G++GLF+G V++A+   ++   +   K  +++
Sbjct: 320 LGAIGGMLFYGIVGLFLGAVILAIWYELFVWWLNIEKAQQQQ 361


>gi|194290057|ref|YP_002005964.1| hypothetical protein RALTA_A1960 [Cupriavidus taiwanensis LMG
           19424]
 gi|193223892|emb|CAQ69901.1| conserved hypothetical protein, UPF0118; putative membrane protein
           [Cupriavidus taiwanensis LMG 19424]
          Length = 367

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 63/347 (18%), Positives = 142/347 (40%), Gaps = 7/347 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  + +      + F   ++ ++I+  T +P+      K        A +  ++ + + 
Sbjct: 24  LIAVLAIFCFQIFRPFLDLIVWSVILAVTIYPLQVRLRRKLGNKDGRAATLIVLAAIAII 83

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
            +P   L    +  +   ++ +     H  P    ++  P  G    ++W +  S    +
Sbjct: 84  ALPAYLLGAAMVDSVANAMAVIRKEGLHIPPPAESVASWPLVGQRLYDVWLQAASDLTGV 143

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                  ++   +  +   A+  G   L +  ++I   I + +    G + ++    +  
Sbjct: 144 IQAHAPQVREISLAVLGT-AAGIGKGLLIFVFALIIGGIFMAY----GEAGNRSAVQIAA 198

Query: 194 HLF-PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            +F P   ++I+ +    IR+   G+  IA  + L++G A+ + GVP+   L +   ++ 
Sbjct: 199 RVFGPERGQRIASLCTATIRAVAQGVVGIAFIQMLLIGVAFVIKGVPAAGVLAMAVLLLG 258

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +    A +    V IY+        AT +F        + D  L+P L+G  + +P    
Sbjct: 259 IAQLPATLITVPVIIYVFASEGASVATIVFSIYVFVAGLADNVLKPLLLGRGVDVPMPVV 318

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             G +GG+ T G++GLFIGPV++A+   ++ + +       E  +  
Sbjct: 319 LIGALGGMVTGGVIGLFIGPVVLAVGYQLFWQWVEDPPSQTEPGNQQ 365


>gi|294139374|ref|YP_003555352.1| hypothetical protein SVI_0603 [Shewanella violacea DSS12]
 gi|293325843|dbj|BAJ00574.1| conserved hypothetical protein [Shewanella violacea DSS12]
          Length = 376

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 64/351 (18%), Positives = 141/351 (40%), Gaps = 8/351 (2%)

Query: 9   QGIMRWMIMF-IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +  +R  ++F ++L +   ++ F  PVL   II     P+        +      A    
Sbjct: 15  ESAIRIGLLFMLVLWTFDIIRPFVIPVLWGAIIAVALMPLTQKLEKAFKGRRGLAATAMA 74

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKH 126
           +  + L ++P + +       +   +  +     +     + ++DIP  G    E+W   
Sbjct: 75  IIGIALLVIPFVLVSGSIFDGVSHAIEVLQSGEVNIPGPTQKVADIPVIGDKLYEIWALF 134

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            ++ +         +KT     +   AS  G       +  I  +     F  +   IS 
Sbjct: 135 STNLEKAVQHFLPEIKTA----VGTIASVIGSSLAT-LMMFIISLAIAAGFMSNAEKISG 189

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            + ++   +     ++ + +    IRS  LG+  +A  + +++GSA ++  VP+   + +
Sbjct: 190 AISTVAVRVVGKNGEQWTTLTAATIRSVLLGVVGVAFIQSMLIGSAMFVFNVPAAGLITL 249

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
              I+ +    A I       Y+    +  +A    +W  +   + D  L+P L+G  + 
Sbjct: 250 GVLILGIAQLPALIVVLPAIFYVFSTQDTTSAIIFTVW-VLLAGVSDSFLKPMLMGRGVD 308

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           +P      G +GG+   G++GLF+G V++A+   ++   + A K  + + S
Sbjct: 309 VPMPVILIGAIGGMLAAGIIGLFLGAVILAIWYELFMAWLKADKAPEAEQS 359


>gi|260899709|ref|ZP_05908104.1| hipothetical membrane protein [Vibrio parahaemolyticus AQ4037]
 gi|308106878|gb|EFO44418.1| hipothetical membrane protein [Vibrio parahaemolyticus AQ4037]
 gi|328469371|gb|EGF40317.1| hypothetical protein VP10329_10821 [Vibrio parahaemolyticus 10329]
          Length = 381

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 62/348 (17%), Positives = 139/348 (39%), Gaps = 8/348 (2%)

Query: 9   QGIMRWMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +  +R  ++F++L+  Y  ++ F  PV+   II     P+               A    
Sbjct: 19  ESAIRIGLIFVLLMFTYDIIRPFILPVIWGAIIAVALLPLTKKLQRAYGGRRGLAATTIA 78

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKH 126
           +  + L + PL+ +    +      +  +             ++D P  G    E+WT  
Sbjct: 79  LLGIALLVTPLVMVSGSIVDGATHALDVLQNGQVKIPGPKASVADWPLVGDKLYEVWTLF 138

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            ++ +         +K+     +       G + L      I      +       S++ 
Sbjct: 139 ATNLEQAIQTFMPQIKSALTSLLGMVGGVLGSLLLSILSLAIAAGFMTY-----SESLAS 193

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L ++         K  + ++   I+S  LG+  +A  + L++G+ +++ GVP+   L +
Sbjct: 194 GLQTIAIRTAGENAKSWTTLIAATIKSVLLGVVGVAAIQALLIGAGFFVFGVPAAGLLTL 253

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           I  I+ +    A ++   V  Y+ +  +   AT   +W A+   + +  L+P  +G  + 
Sbjct: 254 ILMILCIAQLPALLAVLPVIGYMYMTQDSTTATMFTVW-AVVGALSENLLKPMFMGRGVD 312

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           +P      G +GG+   G++GLF+G V++A+   ++   +   K  ++
Sbjct: 313 VPMPVILLGAIGGMLFYGIVGLFLGAVILAIWYELFVWWLSIEKAQQQ 360


>gi|311106377|ref|YP_003979230.1| hypothetical protein AXYL_03195 [Achromobacter xylosoxidans A8]
 gi|310761066|gb|ADP16515.1| hypothetical protein AXYL_03195 [Achromobacter xylosoxidans A8]
          Length = 376

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 66/341 (19%), Positives = 137/341 (40%), Gaps = 7/341 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            ++  ++  SLY L+ F   ++ A  I   +WP+  +             +   V ++ +
Sbjct: 19  VILAGLMAGSLYILRPFLPGLVWATTIVVATWPVMLAIQRYCGGRRWIGTLTMLVILLFV 78

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVL-ANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQ 131
            ++PL  +     L    +++ V    +   +  P W+  IP  G   +  W        
Sbjct: 79  IVLPLYEVISTLALHSGTIMAAVKSLPDYALLAPPAWVQGIPLVGPKIAHEWQTLSDAGA 138

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              +       T+ + ++   A+  G   +   ++++   I     Y  G      +   
Sbjct: 139 GGLLAKLEPYLTSAVTWLLGHAAIVGAFMMHMLITVVVAGI----LYTKGEVAVDFVRRF 194

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L         ++  + IR+  LG+ + A+ +  + G   W+AGVP+   L  +  ++
Sbjct: 195 FNRLAGQRGLAAVKLAGQAIRAVALGIVVTAVVQSGLGGIGLWIAGVPAAGILTALMVML 254

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +   G  +      ++L        A  L +W A+ + ++D  LRP L+   + L  L 
Sbjct: 255 CLAQLGPFLPMLGGVVWLFQNDMKLAAAVLLVW-AVLVAMLDNLLRPLLIKRGVNLSLLL 313

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              G++GG+   G++GLFIGPV++A+   + K  I  +   
Sbjct: 314 ILVGVLGGLFAFGIVGLFIGPVILAVTHTLLKAWIDEVPPP 354


>gi|284163852|ref|YP_003402131.1| hypothetical protein Htur_0560 [Haloterrigena turkmenica DSM 5511]
 gi|284013507|gb|ADB59458.1| protein of unknown function UPF0118 [Haloterrigena turkmenica DSM
           5511]
          Length = 339

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 60/337 (17%), Positives = 132/337 (39%), Gaps = 18/337 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +G +  ++  +  +S   +  F    L A+++ +   P+      +   SS   A+
Sbjct: 1   MNISKGFLLALVAVLAFLSWLLIAPFLQYALIAVLLAYVLRPVQRRLERRT--SSMIAAM 58

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
              +  +  F++PL  +    + +   +V  +   +     V   + +            
Sbjct: 59  ALVLLTITGFVIPLAIILTVVIQDATRIVENLDADSVSVTEVESLIQE------------ 106

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
              +      + S T     G   +   ++ +   F    +     +  L++  +DG  +
Sbjct: 107 --QTGMSVDLMSSLTDAARQGGQLVLEQSTAWLSAFTHALIGFGLALFMLYYLLKDGDKL 164

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              +      L       +   + +V+ +  +G  +IA+ +GL+ G    + G+P+    
Sbjct: 165 IGWIRKRTP-LPDDVQDDLYTELDEVMHAVLIGHVLIALVQGLLAGIGLIVTGIPNAAFW 223

Query: 245 GVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            VI  ++A+IP  G  + +    ++LL  G    A  LF++  + + + D  LRP +V  
Sbjct: 224 TVIMVVLALIPIIGTFLVWGPAVVFLLATGEPLFAVGLFVYSTVIVGLSDDYLRPLVVDR 283

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
             +L       G++GG    G +GLF GPV++  +  
Sbjct: 284 YAELNPAVIIVGVLGGAYAFGFMGLFFGPVILGALRA 320


>gi|313887473|ref|ZP_07821162.1| putative membrane protein [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923115|gb|EFR33935.1| putative membrane protein [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 401

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/323 (17%), Positives = 115/323 (35%), Gaps = 19/323 (5%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
             + + VL AL I           + +K     + A + TV  +  F++PLL +    + 
Sbjct: 40  LPYMSGVLGALTIYVLLRGQMKWLVERKRWGRNWAASLLTVEAIFFFLIPLLGIVLMLID 99

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
                  +    N         +  +           +++                    
Sbjct: 100 LFSAFDPE--SLNVLTTQAQDVVKQVEERFGIEIWSNENIQ---------------KLTS 142

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
           F              + L+   ++  L+F  R        ++ L         K +S   
Sbjct: 143 FSTSLVKGLLQGMSSFFLNAFIILFLLYFMLRGYDQFEAAVEELLP-FTECNKKTVSNET 201

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVS 266
             +++S  +G+ ++AI +G+     Y + GV + +   V+T    +IP  G  + +  ++
Sbjct: 202 ISIVKSNAIGIPLLAIVQGVFAYIGYLIFGVDNALLFAVLTTFTTIIPVLGTMLVWIPIA 261

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           + + I G+  NA  L L+G I +  VD   R  L      +  L T FG+  G+   G  
Sbjct: 262 VVMGINGDWLNAILLALYGFIVIGGVDNVARLLLQKQMANIHPLITIFGVFIGLSLFGFW 321

Query: 327 GLFIGPVLMALIAVIWKESIMAI 349
           G+  GP++++LI +         
Sbjct: 322 GVIFGPLILSLIVLFINLYRHDF 344


>gi|85717448|ref|ZP_01048397.1| hypothetical protein NB311A_10710 [Nitrobacter sp. Nb-311A]
 gi|85695750|gb|EAQ33659.1| hypothetical protein NB311A_10710 [Nitrobacter sp. Nb-311A]
          Length = 360

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 68/337 (20%), Positives = 143/337 (42%), Gaps = 7/337 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           ++  +I  +   ++ F + +  ++++    +P++              A I T   + + 
Sbjct: 22  LLALLIYWTFVLIRPFVSILAWSIVLTVALYPVFDLLSRLLGGRQRLAAAILTFINLGIV 81

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
           I P ++L    +  +KE    +   N      P  ++  P  G    E W +   + ++ 
Sbjct: 82  IGPAMWLGLNALEGVKEFAVNLGAGNLVIPSPPESINTWPLIGPNVYEFWDQASINIRAA 141

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                 +LK      +  FA   G+  L + LS+        F +  G  + +   S   
Sbjct: 142 LREVAPYLKPLAGGLLA-FAGNAGVGTLKFLLSVALSG----FLFPHGSQLMEAGGSFLY 196

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            + P   +    +    IR+   G+  IAI + L+ G  + LAG+ S   L +   I+++
Sbjct: 197 RIVPEQSEHFLALAGATIRAVSQGVIGIAIIQSLLAGIGFELAGLSSAGVLALAVMILSI 256

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +  GA I    V I++    +   AT L ++  + + I+D  L+P ++   +  P L  F
Sbjct: 257 VQIGAAIVLVPVIIWIWTDKDFTTATLLTVFLGL-VGILDNVLKPLVMKRGLTTPTLVIF 315

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            G++GG    G++GLF+GP++++L   +    + + +
Sbjct: 316 VGVIGGTLAHGIVGLFVGPIILSLAWELTVAWLRSGR 352


>gi|197118593|ref|YP_002139020.1| membrane protein [Geobacter bemidjiensis Bem]
 gi|197087953|gb|ACH39224.1| membrane protein UPF0118 [Geobacter bemidjiensis Bem]
          Length = 355

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 145/349 (41%), Gaps = 11/349 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLK----GFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           ++ +     +  F+ + ++  +         P+  ALIIG  + P Y+  + +  E +  
Sbjct: 1   MDKKTYFSILAAFLTIAAIALIVLLAVPILKPLAWALIIGIATMPHYNRILKRFPERAGR 60

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMWAS 120
            + +  ++V    ++P  +L     +   +   +V    Q         LS +P      
Sbjct: 61  ASGLMVLAVSLCLVLPATWLVVTAAVSAPDWYRQVEQLVQDFSKTGSGALSQLPFYDRIM 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L  K       +   +     ++    +   A+       D   +++  +  LFF YRD
Sbjct: 121 GLVQKFGIDLAGIGQKAA----SSASTIVLNTATDMVRNLFDLIFTLLVALFLLFFVYRD 176

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G        +          + ++  +  +  +  +G  +    +G++ G  YW+AGVP+
Sbjct: 177 GERAVSVCIAKLAP-DQRRAQHLAAQIRSITTAVTVGTLLTCATQGVLAGLGYWVAGVPA 235

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  G +TAI A++P  G  + +  +   + ++G+  NA  L LW  + + + D  +RP 
Sbjct: 236 PIFCGALTAIAALVPVVGTGVVWVPLVALIAVQGSYLNAVLLALWCILFVGVADNAIRPL 295

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            VG    +  L    G + GV  MG+LGL +GP++ A++  IW + +  
Sbjct: 296 AVGASSDVSVLAVVAGAICGVVIMGVLGLIVGPLIFAVLFSIWDDVVAE 344


>gi|114048310|ref|YP_738860.1| hypothetical protein Shewmr7_2819 [Shewanella sp. MR-7]
 gi|113889752|gb|ABI43803.1| protein of unknown function UPF0118 [Shewanella sp. MR-7]
          Length = 369

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 68/348 (19%), Positives = 135/348 (38%), Gaps = 8/348 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           M++ +          F   +L A+I+    +P + S   +  +     A +  +  + + 
Sbjct: 26  MLLALASFCYTIFSPFLNIMLWAVILAVVIYPFHQSIAKRLNDKQGRAATLLIIIGLMVL 85

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
           ++P + +       M  LV  V             +++IP  G    ++W K  +   SL
Sbjct: 86  VLPTITMVSSMTDNMGSLVESVNQNTLEVPAPKESIANIPFVGAKIYDVWQKASTDLPSL 145

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
               +  L       I   AS  G + +    S I   I + +    G + +Q    +  
Sbjct: 146 VKSLQPHLGEVTKQVIHALASISGSLLMSMF-SFIIAGIMMAY----GRAGAQSSARIAT 200

Query: 194 HLF-PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            +  P    K+  I    IR+  LG+  +A  + L++G    LAG+P      ++  ++ 
Sbjct: 201 RIAGPERGAKLINICSTTIRAVALGVIGVAFIQALLVGIVMTLAGIPLVGIFFILVLVLG 260

Query: 253 MIPGGAPISFTAVSIYLLIKGNI-FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           +    A +       Y+ + G+     + ++    I    VD  L+P L+G  +  P   
Sbjct: 261 IAQVPALLVTLPAIAYIWMTGDNGTVGSIIYTVLLILAGAVDNVLKPILLGRGVDAPMPV 320

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              G +GG+ T G+LG+FIG  L+++   I+   +    E   +   +
Sbjct: 321 VLIGALGGMATSGILGMFIGATLLSIGYRIFMAWVDEGLEEPLREQDD 368


>gi|251771895|gb|EES52469.1| conserved hypothetical protein [Leptospirillum ferrodiazotrophum]
          Length = 369

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 69/322 (21%), Positives = 144/322 (44%), Gaps = 3/322 (0%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L  +  P+L A I+ F ++P+ + F+ +        A++ TV  + L I PLL      
Sbjct: 33  VLAPYVVPLLWAAILAFATYPLLA-FLRRFVTRPLLSALLMTVLFLGLVIAPLLSFALPL 91

Query: 86  MLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
             E+   V+K+    ++    +P W+  +P     +E W ++         +    L+++
Sbjct: 92  TQEILTEVAKIRGFLENPQATLPPWVDHLPVIGPRAEGWYQNFRSHTPSLSIFLDKLQSH 151

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            + +                +  + +++ LF FY  G ++   + +L         ++  
Sbjct: 152 LLTW-GDRLFSIMTDAGKIAVKTLILLLGLFAFYLRGPALWAGIRTLLLRFGGPATERPF 210

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
             +  V R    GM   A+ +  + G  + +A VP  + L  +   +A+ P GA   +  
Sbjct: 211 NQIAPVTRGVVYGMFFTALSQAALAGIGFGVARVPEALLLTFLLFFLALFPMGAVAVWLP 270

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            S  LL +G         +W AI +  ++  ++P  +G   ++PF+    G++GG+   G
Sbjct: 271 ASFTLLAQGRTLAFLLFLVWNAIVVGGIENVIKPLFIGRSSEMPFILILLGVLGGLEAFG 330

Query: 325 LLGLFIGPVLMALIAVIWKESI 346
           ++GLFIGPV++ ++  +W+++I
Sbjct: 331 IIGLFIGPVILVILQTLWQDAI 352


>gi|145219109|ref|YP_001129818.1| hypothetical protein Cvib_0294 [Prosthecochloris vibrioformis DSM
           265]
 gi|145205273|gb|ABP36316.1| protein of unknown function UPF0118 [Chlorobium phaeovibrioides DSM
           265]
          Length = 360

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 73/358 (20%), Positives = 147/358 (41%), Gaps = 13/358 (3%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           ++   + I+  +++FI  +    ++ F   +  A I    + P+Y+  +       +  A
Sbjct: 3   SLKANRVILLVIVLFISAIFFVMIRYFLMAIFLAAIFSALAMPLYNRILGWVGGRKSLGA 62

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP---RWLSDIPGGMWAS 120
            +  + +  + ++PL+ L     ++  E+  +     +  I      + L  +P      
Sbjct: 63  AVTMMIIFIMGVLPLVALLGIVAIQAVEISRQAAPWVRQMIEPAFLDQQLQSLPFYPEMV 122

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                 +           T + +     +      F    ++        +  +FFF RD
Sbjct: 123 IYREDIMQ--------RVTEVASKTGTVLFNTLFSFTYSAVNELFLFFIFLYTVFFFLRD 174

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G S+ + +      L  A   ++      V R+T  G  I+   +G + G A  +AG+ S
Sbjct: 175 GRSLLETILYYLP-LSDADQHRLLDKFLSVTRATIKGTMIVGTVQGTLAGLALHIAGIES 233

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  G +  +++++P  G P+ +   +I L   G+   A  + L+ +I +  +D  LRP 
Sbjct: 234 ALFWGTMMTVLSVVPVLGPPLVWVPAAISLAFVGHYPQALGVLLFCSIVVGQIDNILRPI 293

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           LVG   +L  L  FFG +GG+   GL G  IGP++ AL   +W+    A  ++   I 
Sbjct: 294 LVGRDTRLHELFIFFGTLGGIGLFGLFGFIIGPIIAALFMTVWEMYGDAFSDSLRDIK 351


>gi|78186116|ref|YP_374159.1| hypothetical protein Plut_0228 [Chlorobium luteolum DSM 273]
 gi|78166018|gb|ABB23116.1| conserved hypothetical protein [Chlorobium luteolum DSM 273]
          Length = 356

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 74/342 (21%), Positives = 140/342 (40%), Gaps = 13/342 (3%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
            +    ++ F   +  A I    S P+++ F+          A +  ++++ +  +PL  
Sbjct: 20  ALFFAMIRYFLMAIFLAAIFSALSMPVHNRFLQWTGGRKGLSAGLTMLALILIGFLPLAL 79

Query: 81  LFYYGMLEMKELVSKVVLANQHGIP---VPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           L     L+   + S+ V   +  +    +   L  +P            L          
Sbjct: 80  LLGVVALQAVHISSQAVPWLKQILEPAFLADQLRTLPYYPELVAYREDILQRVGE----- 134

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              + +N    + +    F    ++     +  +  +FFF RDG  + +++      +  
Sbjct: 135 ---IVSNTGSLLFKKLFSFTYSAVNELFLFMIFLYTMFFFLRDGKPLLERVLYYLP-MSD 190

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG- 256
           A  +++      V R+T  G  I+ + +G + G A  L G+ S +  G I  +++++P  
Sbjct: 191 ADQQRLLDKFLSVTRATIKGTMIVGVVQGGLAGMALHLGGIESALFWGTIMTVLSVVPVL 250

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           G PI +    I L   G    A  + L+ AI +  +D  LRP LVG   +L  L  FFG 
Sbjct: 251 GPPIIWVPAVISLAASGRFPQAIGVALFCAIVVGQIDNILRPILVGRDTRLHELFIFFGT 310

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +GG+   GL G  IGP++ AL   +W+    A  ++   I +
Sbjct: 311 LGGIGLFGLFGFIIGPIIAALFMTVWEMYGEAFSDSLRDIKT 352


>gi|300023545|ref|YP_003756156.1| hypothetical protein Hden_2034 [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299525366|gb|ADJ23835.1| protein of unknown function UPF0118 [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 354

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 64/350 (18%), Positives = 141/350 (40%), Gaps = 9/350 (2%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
            +T+     I   ++  +  +S   +      ++ + I+    +PIY         S  F
Sbjct: 9   DQTVAIDLAIRISLLTLLAYLSFAIVAPVLTILVWSAILTVALYPIYRWLAHWL-NSPKF 67

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWAS 120
            A   T+  M + + P+ +L +  +  ++ +V K+        P P  + D P  G    
Sbjct: 68  AAAFVTLLCMLVVLAPVTWLGFGLLNGVEVIVQKLDSGLSIPAP-PESIKDWPIAGDQIY 126

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            LWT+ ++   S        LK      +     +     L   L  +  II   F +  
Sbjct: 127 RLWTRAITDISSQLAELAPALKPVAGWLL-----QVASNVLIGLLKFLLSIIVAGFLFCP 181

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  + + L  + E +      ++  +    IR+   G+  +A+ +  + G  + +AGVP 
Sbjct: 182 GPKLVKVLARIMERVLNPRGTEMVELAGATIRNISRGVLGVALLQSFLGGIGFLVAGVPG 241

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
                  + ++ ++  G  + F  + ++  +     +A     +  + + ++D  LRP L
Sbjct: 242 AGIFAFASLVLGILQIGPGVLFLPILVWSWMTQEALHALLFTAY-MVPIGLLDNVLRPIL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +   +  P L    G++GG    G++GLF+GP+++++   + +  +   K
Sbjct: 301 MTRGLTTPMLVIVIGVIGGTIAYGIIGLFVGPIILSVAWELGQAWMNGTK 350


>gi|157961667|ref|YP_001501701.1| hypothetical protein Spea_1843 [Shewanella pealeana ATCC 700345]
 gi|157846667|gb|ABV87166.1| protein of unknown function UPF0118 [Shewanella pealeana ATCC
           700345]
          Length = 383

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 63/352 (17%), Positives = 134/352 (38%), Gaps = 8/352 (2%)

Query: 9   QGIMRWMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +  +R  ++F++LV  +  +K F  PVL   II     P+        +      A I  
Sbjct: 19  ESAIRIGLLFMLLVWTFDIIKPFVIPVLWGAIIAVALMPMTQKLERALKGRRGLAATILA 78

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKH 126
           ++ + L I P   +       +  +V+ +   +       + ++DIP  G    + W   
Sbjct: 79  LAGIILLIAPFWIVSSSIFDGVSHIVAVMQAGDIKIPGPTQRVADIPLIGDKLFDAWALF 138

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            ++ +   +     +KT          S  G       +  I  +     F       S 
Sbjct: 139 ATNLEKAVLHFLPQIKTGVSAAAGMLGSSLGT-----LVMFIISLAIAGGFMAHAEKSSA 193

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            + ++   +     ++ + +    IRS  LG+  +A  + L++GSA +   +P+      
Sbjct: 194 AVSTVAVRVVGKNGEEWTSLTAATIRSVLLGVVGVAFIQSLLIGSALFTFSIPAAGIFTF 253

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           I  I+ +      +    +  Y+    +   AT   +W  +   + D  L+P L+G  + 
Sbjct: 254 IVFILGIAQLPPLLVVLPIIFYVFSTQDSTPATIFTVW-VLIAGVSDSFLKPMLMGRGVD 312

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +P      G +GG+   G++GLF+G V++A+   ++   +   +        
Sbjct: 313 VPMPVILIGAIGGMIAAGIIGLFLGAVILAIWYELFTTWLNMEEAQLASAKE 364


>gi|228470697|ref|ZP_04055548.1| hypothetical protein PORUE0001_1322 [Porphyromonas uenonis 60-3]
 gi|228307554|gb|EEK16550.1| hypothetical protein PORUE0001_1322 [Porphyromonas uenonis 60-3]
          Length = 401

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 57/319 (17%), Positives = 115/319 (36%), Gaps = 19/319 (5%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
             + + VL AL I           + +K    ++ A + TV  +  F++P+L +    + 
Sbjct: 40  LPYMSGVLGALTIYVLLRGQMKWLVERKHWGRSWAASLLTVEAIFFFLIPILGIVLMLID 99

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
                  +    N         +  +           ++L    S+              
Sbjct: 100 LFSTFDPE--SLNVLTTQAQEMIQQVEDRFGIELWSEENLQKLTSVST------------ 145

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
                          + L+   ++  L+F  R        ++ L         + +S   
Sbjct: 146 ---SLVKGLLQGMSSFFLNAFVILFLLYFMLRGYDHFESAVEELLP-FTGKNKRTVSSET 201

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVS 266
             +++S  +G+ ++A+ +G+     Y + GV   +   V+T    +IP  G  I +  ++
Sbjct: 202 ISIVKSNAIGIPVLALVQGVFAYIGYLIFGVEDALLFAVLTTFTTIIPVLGTMIVWVPMA 261

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           I + I G+  NA  L  +G I +  VD   R  L      +  L T FG+  G+   G  
Sbjct: 262 IIMGINGDWLNAILLGAYGFIVIGGVDNVARLLLQKQMANIHPLITIFGVFIGLSLFGFW 321

Query: 327 GLFIGPVLMALIAVIWKES 345
           G+  GP++++LI +     
Sbjct: 322 GVIFGPLILSLIVLFINLY 340


>gi|313156951|gb|EFR56384.1| putative membrane protein [Alistipes sp. HGB5]
          Length = 382

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 60/329 (18%), Positives = 127/329 (38%), Gaps = 20/329 (6%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I+ + +     L  F   +L A  I            + +    +  A +     +  
Sbjct: 33  VLILGLGITICIELTPFLGGLLGAATIYVLLRRQMQVLTACRRWRRSLAASLLLAEAVLC 92

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           F+VP+  + +  + +    V  + L     I   + ++ +        LW +        
Sbjct: 93  FLVPISLIVWMVVNQ----VQDITLRPDSIITPLKHIAALIHEKTGYNLWQEEN------ 142

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                    ++ I  IP+          D+ ++I+ ++  L+F    G  + +    +  
Sbjct: 143 --------ISSMIGMIPKLGQWVVSSIFDFGVNIVVLLFVLYFMLIGGRRMEEYCREILP 194

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                    + R V  ++RS  +G+ ++A+ +G+V    Y + G PS +  GV+T    +
Sbjct: 195 FDSSVSGS-VMREVHMIVRSNAIGIPLLAVVQGIVAYIGYLIFGAPSPLFWGVLTCFATI 253

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP  G  + +  ++ Y+ + G    A  L L+G + +  VD  +R  +         L T
Sbjct: 254 IPIFGTALVWLPLAGYMALAGEWGPAVGLTLYGGLVVTHVDNVVRFVMQKKLADTHPLVT 313

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            FG+  G+   G +G+  GP+L+ +    
Sbjct: 314 IFGVFIGLSLFGFMGVIFGPLLLEMFVFC 342


>gi|227822502|ref|YP_002826474.1| hypothetical protein NGR_c19580 [Sinorhizobium fredii NGR234]
 gi|227341503|gb|ACP25721.1| conserved hypothetical protein [Sinorhizobium fredii NGR234]
          Length = 370

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 63/344 (18%), Positives = 134/344 (38%), Gaps = 7/344 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           ++      SL  +  F    + A I+    +P++ +  +         A   TV  + + 
Sbjct: 31  VLALFAYWSLTLVAPFAIIAIWAGILAVALYPVFRALAALFGGRPRLAAAAITVVALAVI 90

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
             PL  +       ++ +++K+          P  + D P  G W    W +   + ++ 
Sbjct: 91  AGPLAAIALSFAEAVQAVLAKLASGTLVVPAPPDAVRDWPLIGNWLHAAWAQASGNLEAT 150

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                  L   G   + + A   G+  + + +S+I       F +R G  + + L     
Sbjct: 151 LQRLAPSLLQAGGTVLGKIAG-IGVDLIGFIVSVIIAG----FLFRPGPRLGEGLKLFAR 205

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            +          +    IR+   G+  +A+ + L+ G A+ L G+P+   L     I  +
Sbjct: 206 RVAGERGAGFVDLAGATIRNVARGVIGVALLQALLAGLAFSLFGIPAASVLAFAVLIFCI 265

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +  G       V+I+            L L   + + ++D  L+P LV   +K P L   
Sbjct: 266 MQIGPAPVLLPVAIWAWTAMETRATLGLTLI-LVLIGLIDNVLKPVLVARGLKTPMLVIL 324

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
            G++GG  + GL+GLF+GP+++ +   +    + ++   +++  
Sbjct: 325 AGVIGGTLSYGLIGLFLGPIVLGVFYDLVVAWMRSVPRPEDETK 368


>gi|168699365|ref|ZP_02731642.1| hypothetical protein GobsU_07587 [Gemmata obscuriglobus UQM 2246]
          Length = 384

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 58/335 (17%), Positives = 126/335 (37%), Gaps = 12/335 (3%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           I +S      F   +   + +   +WP+ S    +   + T  AV+A+  V+ L  VP  
Sbjct: 48  IGLSAALAVPFLPALTWGVALAIIAWPLSSWL-RRVTANRTCAAVVASAVVILLVAVPSG 106

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
           ++      E+     +       G         +   M A+ +    ++  +  ++  E 
Sbjct: 107 YVAQQVAREVSSSTEQAQQEAVQGT--------LRERMLATPVLRDAVAWAERPEVNLEA 158

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
             K    +++           + + L +   I  L++  RDG    +    L   + P  
Sbjct: 159 EAKKAAREYLGN-GMWLARGSVAFLLQLAIAIYILYYSLRDGDQFLRAARRLLP-VTPEE 216

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GA 258
             ++       + +      + +   G+     +W  G+P+ +  GV+  +++M+P  G 
Sbjct: 217 ADRVFDRAGGSVHANLYASLVTSAINGVNAALLFWATGLPAPILWGVVVFVVSMLPVAGI 276

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            + +   + YL +  +   A  L  WG     +VD  L  +L GG ++L  +P     +G
Sbjct: 277 FLIWVPAAAYLALTDHWGGAVALVAWGVGSSVLVDTLLYTWLAGGRMRLHPVPALLSFIG 336

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G+   G  G+ +GP ++A+   +          + 
Sbjct: 337 GLALFGASGIVLGPAILAVTVAVLDVWHTRTTNSP 371


>gi|289523414|ref|ZP_06440268.1| putative membrane protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503106|gb|EFD24270.1| putative membrane protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 364

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 68/348 (19%), Positives = 141/348 (40%), Gaps = 7/348 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK--KEESSTFLAVIATVS 69
              +   + L+ +   +    P++ ++I+ F S P+      K  + +     A+I    
Sbjct: 17  FLIVFALLALLGISITEPIVRPLMWSVILSFFSHPLNKLLYVKVFRGKRRNLAALITAGC 76

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKV--VLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V+ L  VP+ F+      E    +S +   L +        W S +         +    
Sbjct: 77  VVLLICVPMGFIGISLAREALRFISSLSDNLESIQETFAGAWASLVNRLPDYVIQYFGIK 136

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
             P  L+ L+   +       +  F+             +  + ++ F+  RDG  + + 
Sbjct: 137 GDPSFLRDLTHRAVNYVISS-LGDFSRGLLGNAFKMVYQLFVISVSTFYLLRDGHVVIEY 195

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           LD +   L       +     +++++  +G T+ A  +  +  + ++  G+P+ +  GV+
Sbjct: 196 LDDILP-LPKEERASLFTSATRMMKAVVIGTTVTAGIQACLGVAGWFFLGLPAPLLAGVL 254

Query: 248 TAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             I AMIP  G P      ++YL + GN+  +  L  W  + +  +D  +RP  +    +
Sbjct: 255 LFICAMIPFIGTPFVLIPAAVYLFLMGNVKESIILAGWALLVVSTIDNLIRPLFISEGSR 314

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           + FL  F G+VGG+   G LG+F+GP++++L               +E
Sbjct: 315 VHFLLVFLGVVGGIHVWGFLGIFLGPIVLSLFIFFLDCYRRIWSTKRE 362


>gi|54308755|ref|YP_129775.1| hypothetical protein PBPRA1562 [Photobacterium profundum SS9]
 gi|46913185|emb|CAG19973.1| putative membrane protein [Photobacterium profundum SS9]
          Length = 373

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 142/346 (41%), Gaps = 8/346 (2%)

Query: 9   QGIMRWMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +  +R  ++FI++V  Y  +K F  PVL   II     P+     +         A I  
Sbjct: 19  ESAIRIGLLFILIVWTYDIIKPFVIPVLWGAIIAVALLPLTQKLQNMLGGRRGLSATILA 78

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKH 126
           +  + L + P + +       +  L   V           + ++DIP  G    E+W+  
Sbjct: 79  ILGITLLVAPFVLVSGSIFDAVTHLTDIVQSGEIKISGPTQRIADIPVIGGKLFEVWSLF 138

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            ++ +         +KT     +   AS  G       +  I  +     F     + S+
Sbjct: 139 STNLEKAVTHFLPEIKTA----VGAMASLVGSSLAS-LVMFIISLAIAAGFMTHSIACSE 193

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            + ++   +   + ++ + +    IRS  LG+  +A  + +++G+  ++ GVP+   + +
Sbjct: 194 AIGTVAVRVVGKHGEEWTTLTAATIRSVLLGVVGVAFIQSMLVGAGMFVFGVPAAGLITL 253

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
              I+ +    A I    V  Y+    +  +AT   +W  +   I D  L+P L+G  + 
Sbjct: 254 GVLILGIAQLPALIIVAPVIFYVFSTQDTTSATIFTVW-VLLAGISDNFLKPMLMGRGVD 312

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           +P      G +GG+   G++GLF+G V++A+   ++   +   ++ 
Sbjct: 313 VPMPVILIGAIGGMLAAGIIGLFLGAVVLAIWYELFVTWLKLDQDE 358


>gi|78357491|ref|YP_388940.1| hypothetical protein Dde_2448 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219896|gb|ABB39245.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 415

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 62/327 (18%), Positives = 132/327 (40%), Gaps = 7/327 (2%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL-FIVPLLFLFYYGML 87
            F    + A+++    +P+Y+  + +    S  LA +A +  +C+   +PL       + 
Sbjct: 70  PFLHTFIMAIVLSAICYPLYNKVLQRTGHRSRTLASLAVLLFLCICIALPLFIFVTGLIP 129

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGG--MWASELWTKHLSHPQSLKILSETFLKTNG 145
           +  + V+ V     H      + +        W  +      +    L+    +F +  G
Sbjct: 130 QAVQSVTAVNNWINHTDFDQLFGAGRLEQYLAWVHQHLPFIDASKIDLRAEFISFSRRMG 189

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              +       G     +   ++ ++I  FF  +DG  +  Q+      L       I  
Sbjct: 190 QTLLEGGTYLLGNALTLFFQFLLMLLIV-FFMLKDGKKML-QVVKYMCPLHEDQEDAILL 247

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTA 264
            +  V +S  +G  ++A  +GL  G    L G+P  +  G +    +++P  G  + +  
Sbjct: 248 NLRSVSKSVLVGGLLVAALQGLAGGIGLALVGIP-ALFWGTVMGFASLVPVVGTGLVWMP 306

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             +YLL+ G   ++  LF+W A+ +  +D  LRP+ + G   +     F  ++GG++  G
Sbjct: 307 ACLYLLLMGQWQSSLFLFVWSAVGVASIDSFLRPYFMRGSAGMSTFFIFMSIMGGIKVFG 366

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKE 351
           + G+  GP+++    V+ +       E
Sbjct: 367 MAGVLYGPLILGFTMVMLRLYGEEFSE 393


>gi|127511625|ref|YP_001092822.1| hypothetical protein Shew_0691 [Shewanella loihica PV-4]
 gi|126636920|gb|ABO22563.1| protein of unknown function UPF0118 [Shewanella loihica PV-4]
          Length = 377

 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 56/348 (16%), Positives = 127/348 (36%), Gaps = 7/348 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +    I   ++  +++ +   ++ F  P L   II     P+        +      A +
Sbjct: 17  MTESAIRIGLLAILVIWTYDIVRPFIVPALWGAIIAVALMPLTHRLERMLKGRRGLAATL 76

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWT 124
             +  + L + P + +       +   +  +     H     + +++IP  G    E+W 
Sbjct: 77  IALVGIALLVTPFVVVSGSIFEGVSNTLKVLQSGEIHLPEPTQRVAEIPIIGERLFEVWH 136

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
              S+ +   +     +K           S          +  I  ++    F  +    
Sbjct: 137 NIASNLEKAILHFLPEIKAGFSALAGVIGSSLAT-----LVMFIISLLIAAGFMANSEQC 191

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           +  +  +            + +    IRS  LG+  +A  + +++GSA ++ G+P+   L
Sbjct: 192 AAAMSKVAVRAVGPNAHAWTSLTAATIRSVLLGVVGVAFIQAMLIGSALFVFGLPAAGLL 251

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            ++   + +    A I    +  Y        +AT   +W      I D  L+P L+G  
Sbjct: 252 TLVALFLGIAQLPALIIVLPLIGYAYSSMEGTSATIFSVW-IFLGGISDNILKPMLMGRG 310

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           + +P      G +GG+   G++GLF+G V++A+   ++   +   +  
Sbjct: 311 VDVPMPVILIGAIGGMLFAGIIGLFLGAVVLAIWYELFIAWLNGGEPE 358


>gi|153006036|ref|YP_001380361.1| hypothetical protein Anae109_3181 [Anaeromyxobacter sp. Fw109-5]
 gi|152029609|gb|ABS27377.1| protein of unknown function UPF0118 [Anaeromyxobacter sp. Fw109-5]
          Length = 419

 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 61/322 (18%), Positives = 127/322 (39%), Gaps = 8/322 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           Y    F  P+L A  I     P++    +         A + + +V+   + P+ +L   
Sbjct: 83  YVASPFAKPILLAATIAAILDPVHLRLTAALRGRRAASAGVLSAAVVAAIVGPVAYLVTA 142

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + ++   V  +  A +    V   ++ +P  +            P +L+   E F    
Sbjct: 143 FVWQVVAGVRWLRAALESEG-VSGLVARLPEPLRKIATDVTA-DMPLALERAREAFEGAG 200

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
           G   +    S  G       ++ + M++A++F   +G  + + LD +   L P   +++ 
Sbjct: 201 GAAAVGGLISATGT----LVVNTLVMVVAVYFLLAEGHRLIEWLDEMTP-LEPGQLRELL 255

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
                 + +  +     A  +  +  + + +AGVP      ++T + A++P  GA +   
Sbjct: 256 ATFNGAVGAVVVSALATAGVQAALAFAGFLVAGVPQPAFFAIVTFVAALVPLVGANLVVL 315

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
            V+ +    G+   A  L LW    +  VD  L+P L+   + +     F  L+GG+ T 
Sbjct: 316 PVAAFHFAAGHTVAAGLLALWSLGVVGTVDNLLKPVLMRRGLSVHVSLVFLALLGGLSTF 375

Query: 324 GLLGLFIGPVLMALIAVIWKES 345
           G  G+ +GP+ +A      +  
Sbjct: 376 GAAGIIVGPLALAFFLAAVRMW 397


>gi|218676834|ref|YP_002395653.1| hypothetical protein VS_II1074 [Vibrio splendidus LGP32]
 gi|218325102|emb|CAV26948.1| putative membrane protein [Vibrio splendidus LGP32]
          Length = 366

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 61/343 (17%), Positives = 128/343 (37%), Gaps = 7/343 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            ++      L+ F   V+   II    +P+  +  +K   S    + + +   + L  +P
Sbjct: 23  MLVYWCFAILRPFILLVIWGAIIATALYPVAVAISNKTGMSKGKASALLSFIGVILLFIP 82

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQSLKIL 136
           L  L         +L++ +             L DIP  G           ++ +   I 
Sbjct: 83  LAALSSGIYTSASDLMTGLQDGTLSLPKPKESLQDIPFIGEKVYSTLVAASNNIEGTFIK 142

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               LK              G  F+ + +S I        F  +       +  L   L 
Sbjct: 143 YADELKQFATK-AASVLGSLGGGFIQFIISTIIAGA----FMSNADKCQTGVTHLVARLT 197

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               +++ ++    +RS   G+  +A+ + ++      +AGVP+     +   ++A+I  
Sbjct: 198 DGKGEELVQLSKSTVRSVVQGVIGVAVIQSIMSAIGLVIAGVPAAAFWALAVLLIAIIQL 257

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
              ++     IY+    +   A+   +W  I +   D  L+P L+     +P L    G 
Sbjct: 258 PPILALLPAIIYMFSVESTLAASLFLVWC-ILVSGSDAILKPMLLSRGSHIPMLVILLGA 316

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +GG+   G++GLF+G V+++L   +    +   ++N+E+    
Sbjct: 317 LGGMAMSGIVGLFVGAVILSLSYELMMAWLGLEEKNQEETEKK 359


>gi|312881082|ref|ZP_07740882.1| protein of unknown function UPF0118 [Aminomonas paucivorans DSM
           12260]
 gi|310784373|gb|EFQ24771.1| protein of unknown function UPF0118 [Aminomonas paucivorans DSM
           12260]
          Length = 370

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 70/324 (21%), Positives = 132/324 (40%), Gaps = 8/324 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIATVSVMCLFIVPLLFLFYY 84
             +    P+    +  F + P++++   +         A +  ++ +C  + P+ +L  +
Sbjct: 35  VTRPLVRPLAWGAVAAFLTHPLFAALNRRTRGHCPGLCATLTLLAALCFVLAPVSYLVTF 94

Query: 85  GMLEMKELVSKVVL--ANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              E   LV+ +    A   G     W S +P  +  +      L   + L         
Sbjct: 95  LGQETSALVAAIARFNAQIQGGTPELWFSKLPPRIQET---LGPLLQDRRLWGELVQKAG 151

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 +   +S        +       +++ FF  RDG S+   L S    L     + 
Sbjct: 152 LWVGGLVAAGSSGLLQGTATFLYEASLALVSTFFLVRDGASMVAYLGSALP-LPGEQKRA 210

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
                  ++RS   G+ +    + ++ G  +W+AG+P+ V  G +  +  M+P  G  + 
Sbjct: 211 FLERSRDLLRSVLFGVLLTVALQAVLGGLGWWVAGLPNPVFSGFLMFLFGMVPLVGTALI 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +    +YLLI G+I     L LWGA+ +  VD+ LRP  + G    P      G++GG+ 
Sbjct: 271 WVPGGVYLLIAGHIKAGVLLLLWGALVVGSVDQFLRPLFISGRGGAPTFLVLLGILGGLS 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKES 345
             G LG+F+GP+ +AL  V++   
Sbjct: 331 AWGFLGIFLGPLALALFLVVFDTY 354


>gi|209551614|ref|YP_002283531.1| hypothetical protein Rleg2_4043 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537370|gb|ACI57305.1| protein of unknown function UPF0118 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 385

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 63/332 (18%), Positives = 129/332 (38%), Gaps = 7/332 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I      ++  +  F   V+ + I+    +PI+ +            A I  V  + L 
Sbjct: 32  IIGLFAYWTIVLIAPFALIVIWSAILAVALFPIFQALCRLLGNRPVIAASIIVVFCLVLI 91

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
           I PL  +        + L+ K+ +        P  + + P  G    + W +  S   + 
Sbjct: 92  IAPLALVAVNFADTAQALIGKLRVGEFTLPSAPAAIREWPVVGERLHDAWNQIASDLAAT 151

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            I  +  ++      + + AS  G   L + +SI+   I    F      ++  +  L  
Sbjct: 152 IIKFQAPIREVTAVIVTKLAS-IGGGVLSFVVSIMLSGI----FLTRSARLAAAIQVLAN 206

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            +        +R+    +R+   G+  +A  + L+ G  +   GVP+  AL  +  +  +
Sbjct: 207 RIAGEKGVGFARLAGATVRNVSRGVIGVAFLQTLLCGLCFAFFGVPARGALTFVIFMFCL 266

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +  G  +    V I+     +   A        + + ++D  L+P L+   +  P     
Sbjct: 267 MQLGPGLVLLPVIIWSWFSWSPAAAFAFTA-ITVPIMLIDNILKPVLMARGLSTPMPVIL 325

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            G++GG  + GLLGLF+GPV++++   + K  
Sbjct: 326 IGVIGGTLSHGLLGLFLGPVVLSVFYELLKAW 357


>gi|312883995|ref|ZP_07743712.1| permease [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368453|gb|EFP95988.1| permease [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 361

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 138/346 (39%), Gaps = 10/346 (2%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++   ++         ++ +   ++ A II    +PI+        +     ++++ + 
Sbjct: 12  KVLIIALLLAGFACFLLVEPYINSIVMAFIISLLMFPIHERVERYLPKHRNISSLLSCII 71

Query: 70  VMCLFIVPLLFLFYYGMLE----MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           +  + + PLLF+F   + +     + +   V            W+  +      +     
Sbjct: 72  LTFIIVFPLLFVFAAIIQQGSTFSQSVYQWVTTGGIQTAFEHPWV--VKSLAIINNYLPF 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
               PQ +      F  + G   +   A   G    ++ ++   M+  LFF  RD   I 
Sbjct: 130 DSIAPQEIAQKVAQFSTSFGTRLVGLSAKILGDAT-NFLMNFFLMLFVLFFLLRDHEKII 188

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +  +   L  +   K+   V +V +S  +G  + AI +GL  G    +AG P  +  G
Sbjct: 189 SAIRHILP-LSRSQEDKLLDEVEQVAKSAVMGSFLTAIAQGLAGGIGMAIAGFP-ALFWG 246

Query: 246 VITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            +    + IP  G  + +   S+YLL+ G    A  L  +    +  +D  LRPFL+ G 
Sbjct: 247 TMMGFASFIPVIGTALIWIPASLYLLLTGETGLAIFLAGFSVFVVGSIDNLLRPFLMQGN 306

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             +  L  FF L+GG+   GL+GL  GP++ A+  V++       +
Sbjct: 307 GGMNTLMIFFSLLGGLHLFGLIGLIYGPIIFAVTVVLFHIYEEEFQ 352


>gi|117921351|ref|YP_870543.1| hypothetical protein Shewana3_2910 [Shewanella sp. ANA-3]
 gi|117613683|gb|ABK49137.1| protein of unknown function UPF0118 [Shewanella sp. ANA-3]
          Length = 369

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/348 (19%), Positives = 130/348 (37%), Gaps = 8/348 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           M++ +          F   +L A+I+    +P +     +  +     A +  V  + + 
Sbjct: 26  MLLALASFCYTIFSPFLNIMLWAVILAVVIYPFHQRIAKRLSDKQGRAATLLIVIGLMIL 85

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
           ++P + +       M  LV +V             +++IP  G    + W K  +   SL
Sbjct: 86  VLPTIMMVSSMTDNMGSLVERVNQNTLEVPTPKESIANIPFVGAKIYDFWLKASTDLPSL 145

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
               +  L       I   AS      L    S I   I + +    G + +Q    +  
Sbjct: 146 VKSLQPHLGDAAKQVIHALAS-ISASLLMSMFSFIIAGIMMAY----GHAGAQSSARIAT 200

Query: 194 HLF-PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            +  P    K+  I    IR+  LG+  +A  + L++G     AG+P      ++  I+ 
Sbjct: 201 RIAGPERGAKLVNICSSTIRAVALGVIGVAFIQALLIGIVMTFAGIPLVGIFFILVLILG 260

Query: 253 MIPGGAPISFTAVSIYLLIKGNI-FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           +    A +       Y+ + G+     + ++    I    VD  L+P  +G  +  P   
Sbjct: 261 IAQIPALLVTLPAIAYIWMAGDNGTVGSIIYTVLLILAGAVDNVLKPIFLGRGVDAPMPV 320

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              G +GG+ T G+LG+FIG  L+++   I+   +    E   +   +
Sbjct: 321 VLIGALGGMATSGILGMFIGATLLSIGYRIFMMWVDEGLEEGLREQDD 368


>gi|283781384|ref|YP_003372139.1| hypothetical protein Psta_3618 [Pirellula staleyi DSM 6068]
 gi|283439837|gb|ADB18279.1| protein of unknown function UPF0118 [Pirellula staleyi DSM 6068]
          Length = 542

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 104/238 (43%), Gaps = 7/238 (2%)

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
           P   W +EL        + L+  +           +    S    I       ++ M+ A
Sbjct: 215 PYRAWLTELANPTDEQIEDLRQST----LLTASSPLVSLGSDTVAIVGKLAFGVVIMVAA 270

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           LFF + +G  +      L   L   Y +++     +V R+      + A+ +G++ G  +
Sbjct: 271 LFFLFAEGGKMLNAAIRLSP-LEERYVRELVGEFDRVCRAVVAATLLSAVAQGILAGIGF 329

Query: 234 WLAGVPSHV-ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
           + AGV   V  L V+T ++A++P  GA   +   SIYL   G+   A  L ++GA  +  
Sbjct: 330 YFAGVQHAVALLMVLTCVLAIVPFTGAAAVWIPTSIYLYYDGHTTAAILLAIYGAAIVST 389

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            D  ++P ++ G   L  L     ++GG++ +G +G+ +GP+++  +  + K     +
Sbjct: 390 ADNIIKPLVLHGQSNLHPLLALLSVIGGIQALGPIGILVGPMVVVFLQTLLKLLQREL 447


>gi|218888166|ref|YP_002437487.1| hypothetical protein DvMF_3082 [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218759120|gb|ACL10019.1| protein of unknown function UPF0118 [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 397

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 60/336 (17%), Positives = 136/336 (40%), Gaps = 6/336 (1%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           ++ F   ++   +     +P++    +    SS   A++    ++   ++PL       +
Sbjct: 37  VESFLHTLILGAVFSAICYPLHLRCKTLVRGSSIVSALLVLTGLVVCIVIPLCVFVALLI 96

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDI--PGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            +  + V+ +      G P          P   W               +       +T 
Sbjct: 97  PQGMQTVTAINKWLSGGGPAALLSESNLEPWLQWVRVNLPFIDLSHIDFQTNLLQMSRTA 156

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
           G   I ++ S      + + L  + +++ +FF  +DG  + + +  L   L       I 
Sbjct: 157 GQTLI-QWGSYVLGNTMLFFLHFLLLLLVMFFMLKDGKRMVEGVKYLCP-LREEQEDMII 214

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFT 263
           + + +V R+  +G  ++A+ +G++ G    + G+P  +  G +    +++P  G  + + 
Sbjct: 215 QSLRRVARAVLVGGLLVAVVQGVLGGLGMAIVGMPG-LFWGTVMGFASLVPVVGTGLVWG 273

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             SIYLL+ G    A  L LW ++ +   D  LRP+ + G         F  ++GG++T 
Sbjct: 274 PASIYLLLMGQWKGAVFLVLWCSLVVAGADSFLRPYFMRGSSGASVFYIFLSILGGLKTF 333

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G+ G+  GP++++   V+        ++     ++N
Sbjct: 334 GMAGIIYGPLILSFTMVMLNLYGEEYRDILAPQTAN 369


>gi|317153667|ref|YP_004121715.1| hypothetical protein Daes_1960 [Desulfovibrio aespoeensis Aspo-2]
 gi|316943918|gb|ADU62969.1| protein of unknown function UPF0118 [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 366

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/335 (19%), Positives = 139/335 (41%), Gaps = 4/335 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            ++ F   ++ + ++     P+++  +   +      ++I    ++   ++P+ FL    
Sbjct: 34  IVEPFLHTMIFSTVLAVLFSPVFAWVLPAVKGHRNIASLITVAIIVFCLLLPMTFLVMAL 93

Query: 86  MLEMKE-LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
           + +  E LV+      + G+        + G +   +     L   +     S      +
Sbjct: 94  ISQGVESLVTLNAWVAKGGLDSLASSERLEGYLLWFQRELPFLRISEIDLQASIIQYSRD 153

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               +    +          L  + M+  LF+F RDG  +   +  L   L P     I 
Sbjct: 154 FAQLMIGAGTELVRNAAILVLHFLLMVFILFYFMRDGAKMVAYVKLLSP-LRPRQEDYII 212

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFT 263
             + +V R   +G  ++A+ +GL  G+   + G+P     G + A+ ++IP  G  + + 
Sbjct: 213 DSLRRVARGVLMGCLLVAVLQGLAGGAGLAVVGIP-AFFWGAMMALASLIPVLGTGLVWV 271

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
               +LL+ G    AT L LW  I +  +D  LRP  +    ++     F  ++GGV T 
Sbjct: 272 PAVGFLLLSGQWKEATLLALWCGIVVVGIDTILRPIFMREASRVSTFYIFLAILGGVYTF 331

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           G+LG+F GP++++L+ V+ +  +    E+ +    
Sbjct: 332 GMLGIFYGPLILSLVMVMLQIYVEEYAEDLKDCEE 366


>gi|296106318|ref|YP_003618018.1| transmembrane permease [Legionella pneumophila 2300/99 Alcoy]
 gi|295648219|gb|ADG24066.1| transmembrane permease [Legionella pneumophila 2300/99 Alcoy]
          Length = 283

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 90/274 (32%), Positives = 146/274 (53%), Gaps = 3/274 (1%)

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHP 130
            LF++PL +L    + E +  ++ +   N+ G   P +  +IP  G    + W  ++  P
Sbjct: 3   LLFLIPLSWLIGILIKESQLFINFLQHINKEGGAAPEFFKNIPLVGDDLIQYWDVNIGKP 62

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            S+K        T        +  + G+        + F ++ LFFFYRDG  +  Q+  
Sbjct: 63  GSIKEFLSNLHVTLTPT--SYYIKQIGVNLAHRSFQVGFTLLTLFFFYRDGDKLLLQIQH 120

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +GE+     W + S  +P  +R T  G  ++ IG G+++G  Y L G P+    G ITA+
Sbjct: 121 IGEYCLGDRWFRYSDRLPSALRGTVNGTIVVGIGVGILMGICYALVGFPAPTLTGFITAL 180

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            AMIP   PI F  V++ LL  G++     + +WG + +F+ D  ++P L+GG I+LPFL
Sbjct: 181 AAMIPFVVPIVFIIVALILLSVGSLIGGIIVLVWGTLVMFVADHFVKPVLIGGAIQLPFL 240

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              FG++GGV T+GLLGLF+GP++M L   +W+E
Sbjct: 241 AVLFGILGGVETLGLLGLFLGPMVMVLFVTLWQE 274


>gi|329115312|ref|ZP_08244066.1| UPF0118 inner membrane protein YdiK [Acetobacter pomorum DM001]
 gi|326695291|gb|EGE46978.1| UPF0118 inner membrane protein YdiK [Acetobacter pomorum DM001]
          Length = 360

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 65/335 (19%), Positives = 140/335 (41%), Gaps = 7/335 (2%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           ++L +++ L+ F   ++ A  I  T WP+          S         +  + LF++P 
Sbjct: 30  LVLGAVWILEPFIPALIWAGTIAVTMWPLLLRLQGWLHGSRKMAISCTLLVALALFVLPF 89

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKIL 136
                  +       + +       +P +P  L  +P  G +  + W    +      + 
Sbjct: 90  WMAVSTVVKHADAFSNIIPYIKSLKLPDLPEKLLHLPMVGEYLGKWWQHLQNMKPMDIVQ 149

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                    + ++  +A   GM+ + + L++I + +    F      +    + L   L 
Sbjct: 150 QAVPQPDQIMHYLMSYAGSIGMLAVQFLLTLIILTV----FLAKAEYLITTSERLVGTLS 205

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               + +  +  + IR   LG+T+ AI E LV G   +L GVP    L  +T +  ++  
Sbjct: 206 GKRGQNMLELAVRTIRGVALGVTLTAIVESLVGGGGMYLTGVPWASILTAVTFMACLLQA 265

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           G  ++     I++     +  A  L     + +F+ D  LRP+L+     +P +    G+
Sbjct: 266 GPGVTLFPAVIWVYFDKGVMPAIVLLAITFLTIFL-DNMLRPYLIRKQADVPLVLIMMGV 324

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           +GG+  +GL G+F+GP+++++   + K+ + + +E
Sbjct: 325 IGGLAALGLAGIFVGPMILSITYTLIKQWMESNQE 359


>gi|167624368|ref|YP_001674662.1| hypothetical protein Shal_2445 [Shewanella halifaxensis HAW-EB4]
 gi|167354390|gb|ABZ77003.1| protein of unknown function UPF0118 [Shewanella halifaxensis
           HAW-EB4]
          Length = 383

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/345 (18%), Positives = 137/345 (39%), Gaps = 8/345 (2%)

Query: 9   QGIMRWMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +  +R  ++FI++V  +  +K F  PVL   II     PI        +      A I  
Sbjct: 19  ESAIRIGLLFILIVWTFDIIKPFVIPVLWGAIIAVALMPITQKLERALKGRRGLAASILA 78

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKH 126
           ++ + L I P   +       +  ++  +   +       + ++DIP  G    ++W   
Sbjct: 79  LAGIILLIAPFWIVSSSIFDGVTHMIEVLQSGDVDIPGPTQKVADIPLIGDKLYDIWALF 138

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            ++ +   +     +KT          S  G       +  I  +     F       + 
Sbjct: 139 ATNLEKAVLHFLPQIKTGVTAAAGMLGSSLGS-----LVMFIISLAIAGGFMAHAEKSAA 193

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            + ++   +   + ++ + +    IRS  LG+  +A  + +++GSA +   +P+      
Sbjct: 194 AVSTVAVRVAGKHGEEWTSLTAATIRSVLLGVVGVAFIQSILIGSALFTFSIPAAGIFTF 253

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           I  I+ +      +    +  Y+    +   AT   +W  +   I D  L+P L+G  + 
Sbjct: 254 IVFILGIAQLPPLLVVLPLIFYVFSTHDSTPATIFTVW-VLIAGISDSFLKPMLMGRGVD 312

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           +P      G +GG+ T G++GLF+G V++A+   ++   +   +E
Sbjct: 313 VPMPVILIGAIGGMITAGIIGLFLGAVILAIWYELFITWLKTEEE 357


>gi|327190039|gb|EGE57156.1| hypothetical protein RHECNPAF_470031 [Rhizobium etli CNPAF512]
          Length = 400

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 65/332 (19%), Positives = 130/332 (39%), Gaps = 7/332 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I      +L  +  F   V+ + I+    +PI+ +            AV+  V  + L 
Sbjct: 47  IIGLFAYWTLVLIAPFALIVIWSAILAVALFPIFEALSRLIGNRPVIAAVVIVVFSLVLI 106

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
           I PL  +        + L+ K+   N      P  + + P  G      W +  S   + 
Sbjct: 107 IAPLALVAVNFADAAQALIGKLREGNFTLPAAPAAIREWPVVGERIHGAWNQIASDLAAT 166

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            I  +  ++      + + AS  G   L + +SI+   I    F      ++  +  L  
Sbjct: 167 IIKFQAPIREVTAVIVAKLAS-IGGGILSFVVSIVLSGI----FLTRSARLAAAIQILAS 221

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            +        +R+    +R+   G+  +A  + L+ G  + L  +P+   L  I  ++ +
Sbjct: 222 RIAGEKGVGFARLAGTTVRNVSRGVIGVAFLQALLCGLCFALFDIPASGPLTFIVFVLCL 281

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +  G  +    V ++         A    +  AI + I+D  L+P L+   +  P     
Sbjct: 282 MQLGPALVLLPVILWAWFSWPTPIALVFTVV-AIPIMIIDNILKPILMARGLSTPMPVIL 340

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            G++GG  + GLLGLF+GPV++++   + +  
Sbjct: 341 IGVIGGTLSQGLLGLFLGPVVLSVFYELLRAW 372


>gi|206890655|ref|YP_002249261.1| hypothetical protein THEYE_A1463 [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206742593|gb|ACI21650.1| membrane protein, putative [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 357

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 87/337 (25%), Positives = 152/337 (45%), Gaps = 14/337 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I+   I  +  ++   LK FFA    A++I     P++     K  +     AV+  + V
Sbjct: 19  ILLLFIGILGYLNYQILKSFFASAGWAIVIALVFHPVFDYL-KKFLKYRGLTAVVTIILV 77

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + LF+ P +++ Y  +LE  EL+         G+ +P  +++I      S++  K     
Sbjct: 78  IVLFLFPFVYVSYQIILEAGELI--------KGVNLPELINEIMSHPLLSKILEKLSFIT 129

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIF---LDYCLSIIFMIIALFFFYRDGFSISQQ 187
                  E  +K      +   A R    F   L   L++I      FFF +DG    ++
Sbjct: 130 GGDIASLEIIIKNELSGLLKEGALRIAHGFGDILSLFLNLILTFFIAFFFLKDGHHFVKK 189

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           ++             I   +  +I +TF G  +IA+ +G +LG  ++   +PS    G  
Sbjct: 190 IEEFLP-FAEVDKTSIRNQIRNIIYTTFYGGILIAMLQGTILGITFYFLDMPSSTLWGFA 248

Query: 248 TAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           TA+ + IP  GA   +   SIYLL KG I     L + GA  + ++D  L+P ++ G +K
Sbjct: 249 TAVASFIPVLGAFAVWGPASIYLLAKGLIIKGLILAMVGAFIISLIDNVLKPLIIKGKVK 308

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           LP +  F  ++GG++  GL+G  IGP++ +L     +
Sbjct: 309 LPLIFIFLSVLGGIKIFGLIGFIIGPLVFSLFVSFLE 345


>gi|193782592|ref|NP_435597.2| hypothetical protein SMa0665 [Sinorhizobium meliloti 1021]
 gi|193073048|gb|AAK65009.2| conserved hypothetical protein [Sinorhizobium meliloti 1021]
          Length = 384

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 57/333 (17%), Positives = 135/333 (40%), Gaps = 7/333 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           ++      S   +  F   ++ A I+    +P Y++  +   +     A++ T+  + + 
Sbjct: 34  LVGLFAYWSFTLIAPFAIILIWAAILAVALYPAYAALSAILGQRPRVAALVITMLGLLVI 93

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
           + PL  + +     ++ +++++   +      P  +   P  G     +W+    + +++
Sbjct: 94  VAPLAAIAFSFAEGLQVVLARLNDRSLLISAPPDSIRSFPLIGERIYSVWSMASDNLEAV 153

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
               +  L   G   + + AS  G   L + +S++       F +  G  ++        
Sbjct: 154 LQQIKPALLQAGSKALGKIAS-IGADLLSFVVSVLVAG----FLFGSGARLANSAQGFAS 208

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            +         ++    IR+   G+  +A+ +  +      L  VP+  A+  +  I+ +
Sbjct: 209 RMGGDRGVGFLQLAAATIRNVARGVIGVALLQAFLCILILSLFKVPAPGAIAFVVLILCI 268

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           I  G  ++   V ++         A  LF    I L I+D  ++P LV   +  P L   
Sbjct: 269 IQIGPALALLPVIVWAWTSMEFGMA-ALFTILLIPLLIIDNVMKPILVARGLSTPTLVIL 327

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            G++GG  + GL+GLF+GP+++++   +    +
Sbjct: 328 LGVLGGTLSYGLIGLFLGPIVLSVFHSLLLIWM 360


>gi|307303487|ref|ZP_07583241.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
 gi|306902878|gb|EFN33470.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
          Length = 359

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 68/332 (20%), Positives = 122/332 (36%), Gaps = 13/332 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
             +    F   +  AL++     P++     +        A         +  VPL F+ 
Sbjct: 39  CYFLAVPFLPALTWALVLTVMFRPLHRRIEKRLR-YPEAAAAATVAIAAFVVAVPLTFMA 97

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + E  +    V  A + G      L++ P            L             + 
Sbjct: 98  ERLVNEAAKGAQIVEEAVRSGTWR-DALANYPRLAPVVVWIETQLDLAG---------IA 147

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            +   ++  F++ F    +   +  I     LF+F RDG      L      L      +
Sbjct: 148 GSATSWLTNFSASFVRGSVAQIVDAILTFYFLFYFLRDGQQALGALKEYSP-LSSQEMNR 206

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPIS 261
           +   V + +++   G   +A  +G + G  +WL G+P+ V  G+   ++A++P  GA I 
Sbjct: 207 LFTRVNETVQAVVFGTVAVAAVQGAMGGLIFWLLGLPAPVVWGLAMGLLAVVPVLGAFIV 266

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +   ++ L + G    A  L  WGA  +  +D  L P  VG  +KL  L  F  ++GG+ 
Sbjct: 267 WLPAALSLALGGEWGKALILVAWGAGVVATIDNLLYPIFVGDRLKLHTLTAFMSMIGGII 326

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             G  GL IGPV   +  ++           +
Sbjct: 327 VFGSAGLVIGPVAFTVTLLLLDIWRRHNSNPE 358


>gi|307318663|ref|ZP_07598096.1| protein of unknown function UPF0118 [Sinorhizobium meliloti AK83]
 gi|306895690|gb|EFN26443.1| protein of unknown function UPF0118 [Sinorhizobium meliloti AK83]
          Length = 359

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 68/332 (20%), Positives = 122/332 (36%), Gaps = 13/332 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
             +    F   +  AL++     P++     +        A         +  VPL F+ 
Sbjct: 39  CYFLAVPFLPALTWALVLTVMFRPLHRRIEKRLR-YPEAAAAATVAIAAFVVAVPLTFMA 97

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + E  +    V  A + G      L++ P            L             + 
Sbjct: 98  ERLVNEAAKGAQIVEEAVRSGTWR-DALANYPRLAPVVVWIETQLDLAG---------IA 147

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            +   ++  F++ F    +   +  I     LF+F RDG      L      L      +
Sbjct: 148 GSATSWLTNFSASFVRGSVAQIVDAILTFYFLFYFLRDGQQALGALKEYSP-LSSQEMNR 206

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPIS 261
           +   V + +++   G   +A  +G + G  +WL G+P+ V  G+   ++A++P  GA I 
Sbjct: 207 LFTRVNETVQAVVFGTVAVAAVQGAMGGLMFWLLGLPAPVVWGLAMGLLAVVPVLGAFIV 266

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +   ++ L + G    A  L  WGA  +  +D  L P  VG  +KL  L  F  ++GG+ 
Sbjct: 267 WLPAALSLALGGEWGKALILVAWGAGVVATIDNLLYPIFVGDRLKLHTLTAFMSMIGGII 326

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             G  GL IGPV   +  ++           +
Sbjct: 327 VFGSAGLVIGPVAFTVTLLLLDIWRRHNSNPE 358


>gi|16264659|ref|NP_437451.1| hypothetical protein SM_b21335 [Sinorhizobium meliloti 1021]
 gi|15140797|emb|CAC49311.1| conserved putative membrane protein, possibly a permease
           [Sinorhizobium meliloti 1021]
          Length = 359

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 67/332 (20%), Positives = 122/332 (36%), Gaps = 13/332 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
             +    F   +  AL++     P++     +        A         +  VPL F+ 
Sbjct: 39  CYFLAVPFLPALTWALVLTVMFRPLHRRIEKRLR-YPEAAAAATVAIAAFVVAVPLTFMA 97

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + E  +    V  A + G      L++ P            L             + 
Sbjct: 98  ERLVNEAAKGAQIVEEAVRSGTWR-DALANYPRLAPVVVWIETQLDLAG---------IA 147

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            +   ++  F++ F    +   +  I     LF+F RDG      L      L      +
Sbjct: 148 GSATSWLTNFSASFVRGSVAQIVDAILTFYFLFYFLRDGQQALGALKEYSP-LSSQEMNR 206

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPIS 261
           +   V + +++   G   +A  +G + G  +WL G+P+ +  G+   ++A++P  GA I 
Sbjct: 207 LFTRVNETVQAVVFGTVAVAAVQGAMGGLMFWLLGLPAPMVWGLAMGLLAVVPVLGAFIV 266

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +   ++ L + G    A  L  WGA  +  +D  L P  VG  +KL  L  F  ++GG+ 
Sbjct: 267 WLPAALSLALGGEWGKALILVAWGAGVVATIDNLLYPIFVGDRLKLHTLTAFMSMIGGII 326

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             G  GL IGPV   +  ++           +
Sbjct: 327 VFGSAGLVIGPVAFTVTLLLLDIWRRHNSNPE 358


>gi|254227295|ref|ZP_04920727.1| hipothetical membrane protein [Vibrio sp. Ex25]
 gi|262396438|ref|YP_003288291.1| hypothetical protein VEA_001141 [Vibrio sp. Ex25]
 gi|151939907|gb|EDN58733.1| hipothetical membrane protein [Vibrio sp. Ex25]
 gi|262340032|gb|ACY53826.1| putative membrane protein [Vibrio sp. Ex25]
          Length = 382

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 60/340 (17%), Positives = 134/340 (39%), Gaps = 8/340 (2%)

Query: 9   QGIMRWMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +  +R  ++F++L+  Y  +K F  PV+   II     P+               A    
Sbjct: 19  ESAIRIGLIFVLLMFTYDIIKPFILPVIWGAIIAVALMPLTKKLERAYGGRRGLAATTIA 78

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKH 126
           +  + L + PL+ +    +      +  +             ++D P  G    E+WT  
Sbjct: 79  LLGIALLVTPLVMVSGSIVDGATHALEVLQNGQVKIPGPKPSVADWPVVGDKLYEVWTLF 138

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            ++ +         +K+     +       G + L      I      +       S + 
Sbjct: 139 ATNLEQAIQTFMPQIKSALTSLLGTLGGVLGSLLLSILSLAIAAGFMTY-----SESAAS 193

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L ++         K  + ++   I+S  LG+  +A  + L++G+ +++ GVP+   L +
Sbjct: 194 GLRTIAIRTAGENAKSWTTLIAATIKSVLLGVVGVAAIQALLIGAGFFVFGVPAAGLLTL 253

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           I  I+ +    A ++   V  ++ +  +   AT   +W  +   + +   +P L+G  + 
Sbjct: 254 ILMILCIAQLPALLAVLPVIGFMYMTQDTTTATMFTVW-VVVAALSENLFKPMLMGRGVD 312

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           +P      G +GG+   G++GLF+G V++A+   ++   +
Sbjct: 313 VPMPVILLGAIGGMLFYGIVGLFLGAVILAIWYELFVWWL 352


>gi|224824021|ref|ZP_03697129.1| protein of unknown function UPF0118 [Lutiella nitroferrum 2002]
 gi|224603440|gb|EEG09615.1| protein of unknown function UPF0118 [Lutiella nitroferrum 2002]
          Length = 350

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 73/322 (22%), Positives = 136/322 (42%), Gaps = 4/322 (1%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
            + L  F+  +   + + F   P++   +   +  +   A I TV V  +   P+  L  
Sbjct: 21  YWMLVPFWGALAWGICLAFLLAPVHGWLMRVLKGRAGLSAGIITVLVPVVLAGPVFSLGV 80

Query: 84  YGMLEMKELVSKVV-LANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
               +  +LV+ +     +    +   L   P     +E   + L+              
Sbjct: 81  AFANQFADLVTHLQKQPLRIDANLLTQLERYPLVGSLAEWLRQKLTATNEQLQGWLVSSA 140

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              +  +      F +  L   +    M+  LFF  RDG  +  +   L   + P    K
Sbjct: 141 QMLLQSLASTGGSFVLSALGTIVHFFMMLFLLFFLLRDGRQLLNRAVRLVP-MQPQRRSK 199

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
           + ++V    R+   G  + AI +G ++G  + +AG+PS V  GV+ AI+A++P GG  + 
Sbjct: 200 LLKLVGNTTRAVVYGTGLTAIAQGALVGIGFAIAGLPSAVVFGVLAAILALLPIGGTALV 259

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +      L+       A  + +WGA  + + D  LRP L+     +  L  F G++GG+ 
Sbjct: 260 WVPAVGTLVATSQWGWAIFMLIWGAG-VTVSDNLLRPLLISSQEPVSILVVFVGVIGGLS 318

Query: 322 TMGLLGLFIGPVLMALIAVIWK 343
             G++G+ IGPVL+ +IA + +
Sbjct: 319 AFGMIGVIIGPVLLTVIAALLR 340


>gi|258542555|ref|YP_003187988.1| transporter [Acetobacter pasteurianus IFO 3283-01]
 gi|256633633|dbj|BAH99608.1| transporter [Acetobacter pasteurianus IFO 3283-01]
 gi|256636692|dbj|BAI02661.1| transporter [Acetobacter pasteurianus IFO 3283-03]
 gi|256639745|dbj|BAI05707.1| transporter [Acetobacter pasteurianus IFO 3283-07]
 gi|256642801|dbj|BAI08756.1| transporter [Acetobacter pasteurianus IFO 3283-22]
 gi|256645856|dbj|BAI11804.1| transporter [Acetobacter pasteurianus IFO 3283-26]
 gi|256648909|dbj|BAI14850.1| transporter [Acetobacter pasteurianus IFO 3283-32]
 gi|256651896|dbj|BAI17830.1| transporter [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654953|dbj|BAI20880.1| transporter [Acetobacter pasteurianus IFO 3283-12]
          Length = 360

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 67/336 (19%), Positives = 141/336 (41%), Gaps = 7/336 (2%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           ++L +++ L+ F   ++ A  I  T WP+     +    S         +  + LF++P 
Sbjct: 30  LVLGAVWILEPFIPALIWAGTIAVTMWPLLLRLQAWLHGSRKMAISCTLLVALALFVLPF 89

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKIL 136
                  +         +       +P +P  L  +P  G +  + W    +      + 
Sbjct: 90  WMAVSTVVKHADAFGRIIPYIKSLKLPDLPEKLLHLPLVGEYLGKWWQHLQNMKPMDIVQ 149

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                    + ++  +A   GM+ + + L++I     L  F      +    + L   L 
Sbjct: 150 QAVPQPDQIMHYLMSYAGSIGMLAVQFLLTLII----LAAFLAKAEYLITTSEKLVGTLS 205

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               +++  +  + IR   LG+T+ AI E LV G   +L GVP    L  +T +  ++  
Sbjct: 206 GKRGQEMLELAVRTIRGVALGVTLTAIVESLVGGGGMYLTGVPWASILTAVTFMACLLQA 265

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           G  I+     I++     +  A  L     + +F+ D  LRP+L+     +P +    G+
Sbjct: 266 GPGITLFPAVIWVYFDKGMVPAIVLLAITFLTIFL-DNMLRPYLIRKQADVPLVLIMMGV 324

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           +GG+  +GL G+F+GP+++++   + K+ + + +E+
Sbjct: 325 IGGLAALGLAGIFVGPMILSITYTLIKQWMESNQES 360


>gi|301059634|ref|ZP_07200543.1| conserved hypothetical protein [delta proteobacterium NaphS2]
 gi|300446280|gb|EFK10136.1| conserved hypothetical protein [delta proteobacterium NaphS2]
          Length = 353

 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 55/352 (15%), Positives = 149/352 (42%), Gaps = 8/352 (2%)

Query: 6   LNPQGIMRWMIMFI---ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           ++ +   R+ ++F+   +L+ +     F + ++ A++I    + +Y+       +     
Sbjct: 1   MDEKQGARFFLIFLFCSLLLIVTLFWTFLSAIILAMLIVSIFYSLYAKVNHLFRKREALA 60

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           ++  TV ++   I+P+ +       E  +   +   +      +  +L D P      + 
Sbjct: 61  SLCFTVLILITLIIPMSWFVGTLSNEAYDFY-RTSSSKMSLSKIKVFLRDDPVWAARFKK 119

Query: 123 WTKHLSHP--QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                             + +  N   F+    S      L++ +    M + +++ ++D
Sbjct: 120 INDMTGLEITPETIENLGSSIGKNIGLFLYNQISSVASNLLNFLIQFFLMALTMYYLFKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  + +    L   +  +  +K++    ++ R+  +G  +  I +G++ G  ++  G+ S
Sbjct: 180 GARLKRYFFELLP-VPESQLEKLTDKFHEMGRAIVVGNGLSGIVQGILGGLGFYFFGLSS 238

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               G + + MA +P  GA   F   ++ L + GN   A    ++      +++  ++P 
Sbjct: 239 PFLWGTVISFMAFLPVIGASAVFIPTTVILFLHGNSGLALGFLIYNLSYSSVIEYLIKPR 298

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+G  +++  L  F G++GG++  G+LG+  GP+++ +   + +   +  ++
Sbjct: 299 LIGQGMQMNALLVFVGIIGGIKVFGILGIVYGPLIITVFLTLAEIYRLEYRD 350


>gi|301057257|ref|ZP_07198383.1| conserved hypothetical protein [delta proteobacterium NaphS2]
 gi|300448622|gb|EFK12261.1| conserved hypothetical protein [delta proteobacterium NaphS2]
          Length = 358

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 58/339 (17%), Positives = 124/339 (36%), Gaps = 7/339 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +++ ++       + F    +  +II    +P Y    S         AV+ T+ ++ L 
Sbjct: 26  LVLLLLFWCFRIAQPFIQIFVWGIIIAIAVFPAYRWMNSALGGRKKIAAVLLTLLLLVLI 85

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQSL 133
           +VP L      +   ++L + +   +      P  +   P  G      W+    +  + 
Sbjct: 86  VVPCLMFAGSLVETAEKLSASISEGSLRIPKPPETVKSWPAIGQTLHSFWSLSSENLTAA 145

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                  LK  G+  +   A           +S    I+       +     +   ++  
Sbjct: 146 IKEIAPHLKFVGVWLLNTAAGAGFA-----LVSFFVAILIAGVLLANSEQGVRMARAIAA 200

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            L      +   +    +RS   G+  +A+ + ++ G      GVP      ++  I+A+
Sbjct: 201 RLAGDRGDEFVNMSGATVRSVARGILGVAMIQSILAGLGCLAVGVPGAGLWALLVLILAV 260

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           I     I    + +Y         A    +W  + +   D  L+P L+G  + +P L  F
Sbjct: 261 IQLPTFIILAPIVVYAFYTTGTVPAVLFAVWN-LFVGGCDSFLKPLLMGRGVDVPMLVVF 319

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            G +GG    G++GLFIG ++++L   +++  +    + 
Sbjct: 320 IGAIGGFILNGIIGLFIGAIILSLGFKLFELWLSDSPKQ 358


>gi|150377302|ref|YP_001313897.1| hypothetical protein Smed_5187 [Sinorhizobium medicae WSM419]
 gi|150031849|gb|ABR63964.1| protein of unknown function UPF0118 [Sinorhizobium medicae WSM419]
          Length = 381

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 59/343 (17%), Positives = 135/343 (39%), Gaps = 7/343 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           ++      SL  +  F   ++ A I+    +P Y++  +         A++ T+  + + 
Sbjct: 34  LVGLFAYWSLTLIAPFAIILIWAAILAVALYPAYTALSAVLGHRPRVTALVITMLGLLVI 93

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
           + PL  +       ++ +++++   +      P  +   P  G     +W+    + +++
Sbjct: 94  VAPLAAIAISFAEGLQVVLARLNDRSLLISAPPDSIRSFPLIGERIYSVWSMASDNLEAV 153

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
               +  L   G   +   AS  G   L + +S++       F +  G  ++        
Sbjct: 154 LQQIKPSLLQAGSKALSTIAS-IGADLLSFVVSVLVAG----FLFGSGARLANSARGFAS 208

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            +         ++    IR+   G+  +A+ +  +      L  VP+  A+  +  I+ +
Sbjct: 209 RIGGERGVGFLQLAAATIRNVARGVIGVALLQAFLCVLILSLFKVPAPGAIAFVVLILCI 268

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           I  G  +    V ++         A  LF    I L I+D  ++P LV   +  P L   
Sbjct: 269 IQIGPALVLLPVIVWAWTSMEFGMA-ALFTILLIPLLIIDNVMKPILVARGLSTPTLVIL 327

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            G++GG  + GL+GLF+GP+++++   +    +       E++
Sbjct: 328 LGVLGGTLSYGLIGLFLGPIVLSVFHDLLLIWMSTDTVGAERL 370


>gi|86141183|ref|ZP_01059729.1| hypothetical protein MED217_04177 [Leeuwenhoekiella blandensis
           MED217]
 gi|85831742|gb|EAQ50197.1| hypothetical protein MED217_04177 [Leeuwenhoekiella blandensis
           MED217]
          Length = 354

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 62/331 (18%), Positives = 133/331 (40%), Gaps = 20/331 (6%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +  + + VL A+ +       Y+  + K++      A +A ++   + +VP+        
Sbjct: 29  MTPYLSGVLGAITLYVLLRRFYNYLVDKRKWKEGIAAGVAMLASFLVILVPIGLTVMMLT 88

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++ + V       +                    +W   L        +SE+       
Sbjct: 89  NKIGKAVKNSERVVE-------------VVKQQVGVWEADLGF-----KVSESIDTNAIT 130

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
            ++      F     +  ++I  M   L++   +   + Q L +    L      +I   
Sbjct: 131 SWVSTNLQNFAGGTFNVFIAIGIMYFILYYMLVNNDKLHQSLYAFIP-LNKENIARIGHE 189

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAV 265
              +++S  LG+ ++A+ +G+V    +++ GVP      VITAI +MIP  G  +    V
Sbjct: 190 SVAMVKSNALGIPLVALAQGIVALIGFFIFGVPDPFFWFVITAIGSMIPFIGTLLGIVPV 249

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +I ++  GN   A  + ++G + +   D  +R +++     +  L T  G++ GV   G 
Sbjct: 250 TILMIASGNNLQAVGIAIYGLVVVGSTDNLIRLYVLERLANVHPLVTLIGVIVGVPLFGF 309

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           +GL  GP+L++L  ++ K       + + +I
Sbjct: 310 IGLIFGPLLISLFLLVVKIYKHEYGDPEPEI 340


>gi|150377734|ref|YP_001314329.1| hypothetical protein Smed_5665 [Sinorhizobium medicae WSM419]
 gi|150032281|gb|ABR64396.1| protein of unknown function UPF0118 [Sinorhizobium medicae WSM419]
          Length = 362

 Score =  158 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 74/338 (21%), Positives = 141/338 (41%), Gaps = 7/338 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +   ++  +I  + + L  F   +  A+I+   +  ++   +          AVI     
Sbjct: 19  LALLLVSILIAATFWVLLPFVGVLTYAVILATATAGLFDRMVDLLNGRRRLAAVIFGAVA 78

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLS 128
             + +VPL+FL      ++    + +  A+  GIP +P W++ +P  G  A+  W +   
Sbjct: 79  ATITVVPLIFLCSSVASQLGVAGAWLSAASTRGIPNLPEWVAGLPLVGSKAAAAWQELQR 138

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               L    +  L   G     R+    G   L   L I   ++    F+         +
Sbjct: 139 EGLELLERYQPQLAAAG-----RWLLNLGTGLLLAVLEIFVGVVLAAIFHASRTWALGFV 193

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            ++   +      ++     K I    +G+   A+ EG++    + +AGVP  VAL   T
Sbjct: 194 SAIMVRIVGPKGPELLSAAGKAISGVAIGVIGTALLEGVLAWIGFVIAGVPGAVALAAAT 253

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
             +A+I  G  + +  V+I+L  +G    A  +  WG I L   D  ++P L+    +LP
Sbjct: 254 FFLAVIQIGPLLVWLPVAIWLGAEGQTGWAIFMVAWGIIVLMGTDNIVKPMLIARSGQLP 313

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            L  F G++GG+   G  G+FIG   +A++  + +  +
Sbjct: 314 MLVLFIGVIGGLAAWGFTGMFIGATTLAVLWTVLQAWL 351


>gi|224370368|ref|YP_002604532.1| putative sodium:dicarboxylate symporter permease [Desulfobacterium
           autotrophicum HRM2]
 gi|223693085|gb|ACN16368.1| putative sodium:dicarboxylate symporter permease [Desulfobacterium
           autotrophicum HRM2]
          Length = 358

 Score =  158 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 82/357 (22%), Positives = 142/357 (39%), Gaps = 6/357 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M    +  + ++  M+  I  + L  +  F  P+  A +    + P++            
Sbjct: 1   MTTKDIVQKTVLLTMVFLISALFLNMIHEFLMPMFMASLFSAMASPVHQWLTRHLRGREN 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             +VI    V+ L IVPL  L    + +   +   V    Q  I  P   +         
Sbjct: 61  LASVIVIAGVVLLIIVPLSMLVGVVVTQAINVGQSVTPWVQSFINEPTTFTH----YLEK 116

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             + + +   + + I     L  N   F+    S    + ++     I M+  +F+F   
Sbjct: 117 IPYYEQILPYRDVIIQKAGELVGNISSFLINSLSSATKMTMNALFGSIIMLYVMFYFLTM 176

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +  ++      L  +  + +      V R+T  G  II I +G + G A+ LAG+  
Sbjct: 177 GNVLLDRILYFLP-LKDSDERALLLRFTSVTRATIKGTIIIGIVQGFICGLAFALAGIKG 235

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            V  G I A+ ++IP  G  + +    I L++ G       L +   +    +D  LRP 
Sbjct: 236 PVFWGSIMAVTSIIPAVGTALVWGPALIILVLMGKFTGVIILAVLCGVVAGNLDNVLRPR 295

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           LVG   K+  L   FG +GG+   GLLG+ IGP++ AL   IW     A K+   ++
Sbjct: 296 LVGKDTKMHDLFVLFGTLGGITMFGLLGIIIGPIIAALFITIWGIYGTAFKDYLPRV 352


>gi|212635770|ref|YP_002312295.1| hypothetical protein swp_2989 [Shewanella piezotolerans WP3]
 gi|212557254|gb|ACJ29708.1| Membrane protein, putative [Shewanella piezotolerans WP3]
          Length = 386

 Score =  158 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 62/342 (18%), Positives = 134/342 (39%), Gaps = 8/342 (2%)

Query: 9   QGIMRWMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +  +R  ++FI++V  Y  +K F  PVL   II     P+        +      A I  
Sbjct: 19  ESAIRIGLLFILIVWTYDIIKPFVIPVLWGAIIAVALMPLTQKLERALKGRRGLAATILA 78

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKH 126
           +  + L I P + +       +   ++ +           + ++DIP  G    + W   
Sbjct: 79  LGSIILLITPFILVSSSIFDGVSHTIAVLQSGEIRIPGPTQKIADIPLIGDKLFDAWALF 138

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            ++ +   I     +K+          S  G       +  I  +     F       + 
Sbjct: 139 STNLEKAVIHFLPQIKSAVGTMAGVLGSGVGT-----LVMFIVSLAIAGGFMAHAEKSAA 193

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            + ++   +   + ++ + +    IRS  LG+  +A  + +++GSA +   +P+      
Sbjct: 194 AVSTVAVKVVGKHGEEWTTLTAATIRSVLLGVVGVAFIQAILIGSALFTFSIPAAGLFTF 253

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           I  I+ +      +    +  ++    +   AT   +W  I   + D  L+P L+G  + 
Sbjct: 254 IVFILGIAQLPPLLVVLPLIFFVFSTHDSTPATIFTVW-VIIAGVSDSFLKPMLMGRGVD 312

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           +P      G +GG+ T G++GLF+G V++A+   ++   + +
Sbjct: 313 VPMPVILIGAIGGMITAGIIGLFLGAVVLAIWYELFITWLKS 354


>gi|159029048|emb|CAO90034.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 358

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 66/329 (20%), Positives = 130/329 (39%), Gaps = 7/329 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L+ F   +L   I+    +P++          +    V+ T+  + + I P+  +    
Sbjct: 27  LLRPFLTMILWGAILAIAWYPLFLWLKKLLAGRAKLATVLLTLLCLGIIIGPVSGIAAVL 86

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLKTN 144
              ++ L   +        P P  ++  P  G   + LW +   +        E  LK  
Sbjct: 87  AGNLRTLAEYIDTGAAVIPPPPTDVATWPLIGERIASLWQQASDNTGQFFQRFEPQLKEL 146

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
           G   +   A+  G+  L + +SI+              +++  ++ L E + P     ++
Sbjct: 147 GKISL-SLATSTGLTVLKFIVSILIAAALTL----SAKNLTHLMNRLAEKIAPGRGIALA 201

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            +    +R+   G+  +AI + L++G      G P+   L  +T I+ ++  G  +    
Sbjct: 202 SLTASTVRNVSRGIIGVAIIQSLLIGIGLVTVGTPAAGLLTFLTLILGILQIGPGLIVLG 261

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             I+  +      A    LW  I   +VD  L+P L+G  + +P +    G+ GGV   G
Sbjct: 262 ALIHAWVTLPNSIALLFTLW-MIPATLVDNFLKPILMGRGLPIPMVVILLGVFGGVIAYG 320

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENK 353
           ++GLF+GPVL+ L   + +  I       
Sbjct: 321 IIGLFVGPVLLGLCYELVRAWIGEDSSEP 349


>gi|300771905|ref|ZP_07081776.1| brp/Blh family beta-carotene 15,15'-monooxygenase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300761291|gb|EFK58116.1| brp/Blh family beta-carotene 15,15'-monooxygenase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 354

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 61/333 (18%), Positives = 133/333 (39%), Gaps = 18/333 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  +    L A+ +       Y     +++ + + ++++  +  +   + P   +  Y  
Sbjct: 31  LSYYLPGFLGAVTLYILFRNAYFKMTEQRKWNKSLVSLLMVLLTVVFIVFPTWGIINYIT 90

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            EM  L+       ++   +  +++ +P            L                N +
Sbjct: 91  PEMTNLIGDKNDIIKNFNSIKDYIATVPLLKNVDLSEEALL----------------NIL 134

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             + R+         +  ++++  +  L+F       +   +        P    ++   
Sbjct: 135 QKLTRYLPSILNSIAEVGVNLLVSLFVLYFMLVHSKRMESTIYH-AIPFSPQSKNELWTE 193

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAV 265
           V  ++RS  +G+ I+A+ +G V    YW  GV + +  G +TA+  +IP  G    +  +
Sbjct: 194 VNMMVRSNAIGIPILALCQGFVAMVGYWFLGVENPILWGGMTAVSTIIPVLGTMTVYVPL 253

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           SI+L   G I N   L L+G I +  +D  LR  ++     +P L T FG++ G++  G+
Sbjct: 254 SIFLFANGEIGNGIGLLLYGFIVIGGIDNVLRFTILKKLGDVPPLITVFGVLLGLKLFGM 313

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           LG+  GP++++ + V+ K        +   I  
Sbjct: 314 LGVIFGPLILSSVGVLLKVYSNEYGRSNSGIPD 346


>gi|15606132|ref|NP_213509.1| hypothetical protein aq_740 [Aquifex aeolicus VF5]
 gi|8928496|sp|O66948|Y740_AQUAE RecName: Full=UPF0118 membrane protein aq_740
 gi|2983326|gb|AAC06916.1| hypothetical protein aq_740 [Aquifex aeolicus VF5]
          Length = 353

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 69/322 (21%), Positives = 134/322 (41%), Gaps = 6/322 (1%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            P++ A++ G   +P+Y  FI +K +S    A +    V+   ++P          ++  
Sbjct: 29  NPIVWAIVFGIVLYPLY-GFIKRKLKSENLAAFLVIFIVLVAIVIPFTIFAVITAQQIIV 87

Query: 92  LVSKVVLANQHG--IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI-DF 148
              KVV   Q      +   L +IP      E     L++ QS +         N I  F
Sbjct: 88  FSIKVVNFVQTHSVNDLINSLKEIPFLKEKRESLEPLLNYLQSEEFRRALINALNSILTF 147

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +      +          +   ++ LFF  RDG  + +++ +    +     ++I + + 
Sbjct: 148 VGDRLRSYVYTAGTSLFHVFVFLLTLFFILRDGEKVLKEIIN-SIPMKREDLEEILKTIY 206

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
           + + +   G    A+ + ++    Y LAGV   +   +IT   A +P  GA   +  + I
Sbjct: 207 RTVLAVIYGTVGTAVAQSIMGFIGYSLAGVEFALIWALITFFAAFVPPFGAAFVWVPMDI 266

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           YL     I     L  +G   +  +D  +RP ++   IKLP++  FF  +GG+   G +G
Sbjct: 267 YLFTTKGIKEGLILLFFGTFLISTMDNIVRPLVMKQGIKLPYVALFFSTIGGLIKFGFIG 326

Query: 328 LFIGPVLMALIAVIWKESIMAI 349
           +F+GP++++ +    K     +
Sbjct: 327 VFLGPIILSTMLASVKIYRRRV 348


>gi|227819963|ref|YP_002823934.1| hypothetical protein NGR_b17300 [Sinorhizobium fredii NGR234]
 gi|227338962|gb|ACP23181.1| hypothetical protein NGR_b17300 [Sinorhizobium fredii NGR234]
          Length = 365

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/345 (21%), Positives = 128/345 (37%), Gaps = 13/345 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   I   I+V       F   +  AL++     P++              A  A  
Sbjct: 25  ELVILVAIAAGIVVCYLLAVPFLPALTWALVLAIMFHPLHRRIAKDLPF-PDIAAAAAVA 83

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               + +VPL  +    + E       +  A + G                +      L 
Sbjct: 84  IAAFVVVVPLTLVAERLVNEAASGAQIIAEALRTGG----------WREAIANYPRIGLV 133

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                  L    L  N    +  F++      +   + ++     LF+F RDG      L
Sbjct: 134 LLWMESQLDLAGLAGNAAALLTNFSASLVRRSVVQIIDVVLTFYFLFYFLRDGREALNVL 193

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 L  +   ++   V + + +   G   +AI +G + G  +WL G+PS +  G+  
Sbjct: 194 KDYFP-LRSSEMDRLFFRVSETVHAIVFGTFAVAIVQGTLGGLMFWLLGLPSPLLWGLAM 252

Query: 249 AIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++AM+P  GA I +   ++ L + G    A  L  WGA  +  VD  L P  VG  +KL
Sbjct: 253 GLLAMVPVLGAFIIWIPAALSLALTGEWGKALILTAWGAGVVATVDNLLYPIFVGDRLKL 312

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             + TF  ++GGV   G  GL IGPV   +  ++        +E+
Sbjct: 313 HTVVTFMSMIGGVIVFGPAGLVIGPVTFTVTLLLLDIWCTHHRES 357


>gi|307309747|ref|ZP_07589398.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
 gi|306899849|gb|EFN30473.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
          Length = 381

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 57/333 (17%), Positives = 132/333 (39%), Gaps = 7/333 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           ++      S   +  F   ++ A I+    +P Y++  +         A++ T+  + + 
Sbjct: 34  LVGLFAYWSFTLIAPFAIILIWAAILAVALYPAYAALSAILGHRPRVAALVITMLALLVI 93

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
           + PL  +       ++ +++++   +      P  +   P  G     +W+    + +++
Sbjct: 94  VAPLAAIAISFAEGVQVVLARLNDRSLLISAPPDSIRSFPLIGERIYSVWSMASGNLEAV 153

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
               +  L   G   + + AS  G   L + +S++       F +  G  ++        
Sbjct: 154 LQQIKPSLLQAGSKALGKIAS-IGADLLSFVVSVLVAG----FLFGSGARLANSAQGFAS 208

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            +         ++    IR+   G+  +A+ +  +      L  VP+  A+  +  I+ +
Sbjct: 209 RMGGDRGVGFLQLAAATIRNVARGVIGVALLQAFLCVLILSLFKVPAPGAIAFVVLILCI 268

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           I  G  +    V ++         A  LF    I L I+D  ++P LV   +  P L   
Sbjct: 269 IQIGPALVLLPVIVWAWTSMEFGMA-ALFTILLIPLLIIDNVMKPILVARGLSTPTLVIL 327

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            G++GG  + GL+GLF+GP+++++   +    +
Sbjct: 328 LGVLGGTLSYGLIGLFLGPIVLSVFHSLLVIWM 360


>gi|73542584|ref|YP_297104.1| hypothetical protein Reut_A2900 [Ralstonia eutropha JMP134]
 gi|72119997|gb|AAZ62260.1| Protein of unknown function UPF0118 [Ralstonia eutropha JMP134]
          Length = 379

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 64/345 (18%), Positives = 137/345 (39%), Gaps = 7/345 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  +++        FF  V+ ALI+  T +P+      +   S   +A +  +  + + 
Sbjct: 24  LIATLVIFCFEIFHPFFDLVVWALILAVTIYPLQVRLRGRLGLSEGHIATLIVLLSIAII 83

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
           +VP   L       ++  +  V             ++  P  G      W +  +    L
Sbjct: 84  LVPAYLLGVAVFESVERAIDVVKDGRLSIPQPAESVASWPLVGQQLYAFWQQAATDLSGL 143

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            +     LK   +  + + A   G   L +  ++I   I + +    G   S+  + +  
Sbjct: 144 LMKVAPQLKGFSVGLLAKLAG-LGTGLLVFVFALIIAGIIMAY----GEMGSRSAERIAS 198

Query: 194 HLF-PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            +  P    +I  +    IR+   G+  IA  + +++G A+ +  +P    L +   ++ 
Sbjct: 199 RIVGPDRGLRIVELCTATIRAVAQGVVGIAFIQMMLIGVAFIVKDIPGAGLLALAVLLLG 258

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++   A +    V +Y+        AT +F        + D  L+P L+G  + +P    
Sbjct: 259 IMQLPATLITVPVIVYVFATEGTTFATIVFSIYVFVAGLADNVLKPLLLGRGVDVPMPVV 318

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
             G +GG+ + G++GLFIGPV++A+   ++   +       E ++
Sbjct: 319 LIGALGGMVSGGIIGLFIGPVMLAVGYRLFWLWVDEPAATVEVVT 363


>gi|86157174|ref|YP_463959.1| hypothetical protein Adeh_0747 [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85773685|gb|ABC80522.1| protein of unknown function UPF0118 [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 381

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/327 (21%), Positives = 130/327 (39%), Gaps = 8/327 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + +K F+     A ++             +     +  A + TV V+   +VP+  L   
Sbjct: 28  WMVKPFWVAFFLAAVLTAALRRWMEWLSGRLRGRRSLAAGLLTVGVLLAGVVPVAALGAV 87

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-MWASELWTKHLSHPQSLKILSETFLKT 143
            + E  + +  +  A Q    V   +S +PG     +      L  PQ            
Sbjct: 88  LIREAVDGIQWLRSALQSEG-VWGLVSRLPGPIEDLAHRAVTALGDPQRQLQQLAGEQGG 146

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
                +    +  G     + L  + M+IALFFF  DG  +   +D+    L    ++ +
Sbjct: 147 QAAAAVGGVLAATGT----FVLQTVLMLIALFFFLTDGQRLIAWVDARVP-LRAGQFRTL 201

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISF 262
                +   S        A  + +   + Y +A  P+ + L V+T ++A+IP  GA    
Sbjct: 202 VEDFRRTTLSVVAATAATAGIQTVTALAGYLIARAPNPIFLAVLTLVVALIPAVGATAMV 261

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
            AV+      G+  +   L +WGA  + +VD   RP+L+ G ++L     FF L+GG+  
Sbjct: 262 LAVAALQFATGHTVSGIFLAIWGAAVVSLVDNVARPYLLKGGMELHGGVVFFALLGGLAA 321

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAI 349
            G +GL +GP+++  +  +       +
Sbjct: 322 FGGIGLILGPLVVTFLVTVLNMYRREL 348


>gi|156977852|ref|YP_001448759.1| hypothetical protein VIBHAR_06643 [Vibrio harveyi ATCC BAA-1116]
 gi|156529446|gb|ABU74531.1| hypothetical protein VIBHAR_06643 [Vibrio harveyi ATCC BAA-1116]
          Length = 365

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 131/336 (38%), Gaps = 7/336 (2%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           + +   +K F  PV+   II     PI               A    +  + L + PL+ 
Sbjct: 16  MFTYDIIKAFILPVIWGAIIAVALMPICMKLERVYGGKRGLAATTIALLGIALLVAPLVM 75

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSET 139
           +    +      +  +   +         +++ P  G    E+WT   ++ +        
Sbjct: 76  VSGSIVDGATHALEVLQNGDIKIPGPKPSVAEWPLVGDKLYEVWTLFATNLEKAIQTFMP 135

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            +K+     +       G + L      I      +       SI+  L ++        
Sbjct: 136 QIKSGLTSLLGMVGGALGSLLLSIISLAIAAGFMTY-----SESIASGLRTVAVRTAGDN 190

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            K  + ++   I+S  LG+  +A  + L++G+ +++ GVP+   L +I  I+ +    A 
Sbjct: 191 AKSWTTLIAATIKSVLLGVVGVAAIQALLIGAGFFIFGVPAAGLLTLILMILCIAQLPAL 250

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           ++   V  Y+ +  +   AT   +W  +   + +   +P L+G  + +P      G +GG
Sbjct: 251 LAVLPVFGYMYMTNDTSTATMFTVW-VVVAALSENLFKPMLMGRGVDVPMPVILLGAIGG 309

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +   G++GLF+G V++A+   ++   +   K  +++
Sbjct: 310 MLFYGIVGLFLGAVILAIWYELFVWWLSIEKAQQQE 345


>gi|288817681|ref|YP_003432028.1| putative permease [Hydrogenobacter thermophilus TK-6]
 gi|288787080|dbj|BAI68827.1| putative permease [Hydrogenobacter thermophilus TK-6]
 gi|308751279|gb|ADO44762.1| protein of unknown function UPF0118 [Hydrogenobacter thermophilus
           TK-6]
          Length = 356

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 73/333 (21%), Positives = 145/333 (43%), Gaps = 12/333 (3%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +F   + L  L  F  P+L A+I    ++P++ S       + T  A++ T+ V+   ++
Sbjct: 16  VFFTFLVLVILTPFLKPILWAVIFSLVAYPLHLSLSRLLRNN-TLSALMVTLLVLTFIVI 74

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
           P L +      +  E+   ++   Q+   +   L  +      ++L T+ +       + 
Sbjct: 75  PFLIIGLVAAKQSVEITKAIIQYLQNHT-LTDVLHSLYSLPVVNKLITEEILQRVYEYMQ 133

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSI-------IFMIIALFFFYRDGFSISQQLD 189
           SE F K     ++ +   + G IF     +           +I+ FF  RDG    +   
Sbjct: 134 SEEF-KNTITSYLSKLTQKAGEIFTSMLFATGSVIFKSFVFLISFFFILRDGRRFVEFFA 192

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                     + ++   + K I +   G   +A+ + ++   AY + G+   +   +IT 
Sbjct: 193 RFLPMHKEDLY-EVLLTIYKTILAVVYGSIGVALVQAVLSFIAYTVVGINYSLLWALITF 251

Query: 250 IMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I + +P  G    +  ++IY  +   +F    + LWG++ +  VD  LRP ++   IK+P
Sbjct: 252 IASFVPPFGTGFVWVPIAIYTFLNKGLFYGIFMLLWGSLVISTVDNILRPLIMKKGIKMP 311

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++  FF  VGG+ T G LGLF+GP++   +  +
Sbjct: 312 YIVLFFSTVGGLLTFGFLGLFLGPIVFTTLFSL 344


>gi|325111313|ref|YP_004272381.1| hypothetical protein Plabr_4788 [Planctomyces brasiliensis DSM
           5305]
 gi|324971581|gb|ADY62359.1| protein of unknown function UPF0118 [Planctomyces brasiliensis DSM
           5305]
          Length = 459

 Score =  156 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 67/355 (18%), Positives = 143/355 (40%), Gaps = 34/355 (9%)

Query: 39  IIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVL 98
           ++   + P+Y+ F+ + +   T  A +AT +++   I+PL      G L++     +++ 
Sbjct: 74  VVALIAQPVYNYFLKRTKNRPTVAAGMATGTIVAAVIIPLFIGITVGALQLFVAAEQLLD 133

Query: 99  ANQHGIPVPRWLSD------IPGGMWASELWTKHLSH---PQSLKILSETFLKT------ 143
                  +            I  G     + T         + LK   E  L+       
Sbjct: 134 DETVQRTIDTVKQGEIYESVIVWGEQFFPIVTAEYQDRYSEEDLKEWREEVLEQRAENLR 193

Query: 144 ----NGIDFIPRFASRFGMIFLDY---------CLSIIFMIIALFFFYRDGFSISQQLDS 190
               NG+  +       G  F             + +I  ++AL++F+ +G ++ Q    
Sbjct: 194 ESVQNGLKRLAVITFSAGTAFTTVDILAKTGWTLMGLITFVMALYYFFCEGPNLLQHAID 253

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L   +   + + + +     IR+      + A+ +G+    A W  G        ++   
Sbjct: 254 LIP-VDVNHQRTLFQEFGTSIRAVVSATFLAALAQGIATSVALWALGFGHFFLFTIVATF 312

Query: 251 MAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            A+IP  G  + +   ++YL  +G+   A  L ++G   +  +D  +R +++    KL  
Sbjct: 313 SALIPLAGTWLVWLPCAVYLAYQGSWIWALLLAVYGFGLVGTLDNIIRAYVLHSDAKLHP 372

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK----ESIMAIKENKEKISSNF 360
           L  F  ++GG++ MGL G+FI PV+ + +  + +    E +   +  +E+  +NF
Sbjct: 373 LLAFVSVLGGLQVMGLWGVFIAPVVASCLYALIRIFNEELVDISRLQRERPPANF 427


>gi|296120548|ref|YP_003628326.1| hypothetical protein Plim_0276 [Planctomyces limnophilus DSM 3776]
 gi|296012888|gb|ADG66127.1| protein of unknown function UPF0118 [Planctomyces limnophilus DSM
           3776]
          Length = 423

 Score =  156 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 72/348 (20%), Positives = 157/348 (45%), Gaps = 10/348 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++  +++  IL+    +  +   +L A ++   + P++SS ++     ++  A   T  V
Sbjct: 21  VLSVVMVIFILMFYQVMAPYLMSLLLAGVLAILAQPMHSSSLAYCRGWTSLAAAATTTGV 80

Query: 71  MCLFIVPLLFLFYYGMLEMKELVS-------KVVLANQHGIPVPRWLSDIPGGMWASELW 123
           + + ++P+LF      LE+   V           + +   + + +++  I   M A    
Sbjct: 81  VVVIVLPILFAILLTGLELSVFVQDNLSDSSWEQIKSTVSLRIDQFVQRIMPLMPAGADQ 140

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                   +        L     +         G   +++ + +   ++ L+FF  DG  
Sbjct: 141 EAVKEQLLTGIQNQVKQLGVGASEIASSTWGIIGT-LINFFIQLTVCLLGLYFFLADGPR 199

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           I     +L   + P Y +++     KV RS  +G  + A+G+G+ +  A  + G+     
Sbjct: 200 ILHGAQNLIP-IQPEYQQQVFDQFTKVTRSVVMGTLVAAVGQGIAMSLAVGVLGIGHIFV 258

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           +G++T + AM+P  GA   +  +SIYL  +G+ F A  LFL+G + +  +D  +R + + 
Sbjct: 259 IGMVTTVAAMVPMIGAAGVYVPMSIYLATQGHYFTAAGLFLFGFLVISSIDNVVRAYTLS 318

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             +++  L  F  ++GG+   GL G+F+GP++ +++  + K     +K
Sbjct: 319 SNVQMHPLLGFVSILGGLEAFGLWGIFLGPMIASVLYALAKIFNQELK 366


>gi|227540180|ref|ZP_03970229.1| transmembrane protein [Sphingobacterium spiritivorum ATCC 33300]
 gi|227240041|gb|EEI90056.1| transmembrane protein [Sphingobacterium spiritivorum ATCC 33300]
          Length = 354

 Score =  156 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 60/333 (18%), Positives = 132/333 (39%), Gaps = 18/333 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  +    L A+ +       Y     +++ + + ++++  +  +   + P   +  Y  
Sbjct: 31  LSYYLPGFLGAVTLYILFRNAYFKMTEQRKWNKSLVSLLMVLLTVVFIVFPTWGIINYIT 90

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E+  LV       ++   +  +++ +P            L                N +
Sbjct: 91  PELTNLVGDKNDIIKNFNSIKDYIATVPLLKNVDLSEEALL----------------NIL 134

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             + R+         +  ++++  +  L+F       +   +             ++   
Sbjct: 135 QKLTRYLPSILNSIAEVGVNLLVSLFVLYFMLVHSKRMESTIYH-AIPFSTQSKNELWTE 193

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAV 265
           V  ++RS  +G+ I+A+ +G V    YW  GV + +  G +TA+  +IP  G    +  +
Sbjct: 194 VNMMVRSNAIGIPILALCQGFVAMIGYWFLGVENPILWGGMTAVSTIIPVLGTMTVYVPL 253

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           SI+L   G I N   L L+G I +  +D  LR  ++     +P L T FG++ G++  G+
Sbjct: 254 SIFLFANGQIGNGIGLLLYGFIVIGGIDNVLRFTILKKLGDVPPLITVFGVLLGLKLFGM 313

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           LG+  GP++++ + V+ K        +   I  
Sbjct: 314 LGVIFGPLILSSVGVLLKVYSNEYGRSNSGIPD 346


>gi|124515995|gb|EAY57504.1| conserved hypothetical protein [Leptospirillum rubarum]
          Length = 361

 Score =  156 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 74/343 (21%), Positives = 142/343 (41%), Gaps = 5/343 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I   + + +  +    +  + + +L A I+ F   PI++  + K      + A++ T   
Sbjct: 21  IAMALFLCLFGLLYLIIAPYLSALLWAAILSFAVTPIHAFLLRKI-GRPAWTALLTTFLF 79

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLS 128
           +   + PLL L      E+   V+ +    +     VP W++ +P  G     L T   +
Sbjct: 80  LGFVLAPLLSLGVPLSHELILAVNGIRTFLEDPHSKVPDWIARLPLVGSRIDALLTGLKT 139

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           HP  L + +        I                + L     ++A F F   G +I   L
Sbjct: 140 HPIGLDVATAKL--QTHILAFGDQVLSLATNLGKWFLKFFIFLLAFFAFTLHGETIWATL 197

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L         +   +++P   R    G+   A+ + ++    +W AG+P+ + L  I 
Sbjct: 198 SRLFTQWAGNRMEIPLKVIPATTRGVLYGVFFTALFQAILSAIGFWAAGLPNVLLLTTIA 257

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            + A+ P GA + +    +YL +  +   A    LW  +   I++  ++P  +G    +P
Sbjct: 258 FLAALFPIGAVVVWVPSLLYLAVMHHWIAALIFGLWNLLGGGIIEHFIKPMFIGRSSDIP 317

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           FL    G++GG+   GL+GLFIGPV++++   + K    +  E
Sbjct: 318 FLAILLGVMGGLEAFGLIGLFIGPVVLSVTLALLKALASSPSE 360


>gi|27378566|ref|NP_770095.1| hypothetical protein blr3455 [Bradyrhizobium japonicum USDA 110]
 gi|27351714|dbj|BAC48720.1| blr3455 [Bradyrhizobium japonicum USDA 110]
          Length = 351

 Score =  156 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 66/345 (19%), Positives = 146/345 (42%), Gaps = 7/345 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           ++  +I  +LY ++ F   ++ AL++     PI+          +   A + T   + + 
Sbjct: 10  LLALLIFWTLYLIRPFVTILVWALVLAVAFNPIFLVLAKILGGRAKLAAGLLTAINLAIV 69

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
           I P  +L    +  +++   ++   +      P  +   P  G    E W +  ++ +S+
Sbjct: 70  IGPAAWLGLGAVDGIRDFAGELAAGDLVIPSPPAAIKTWPLIGTPLYEFWDQASTNLRSV 129

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                 +LK      +   A   G+  + + LS++       +    G  +     S   
Sbjct: 130 VQRIAPYLKPFAGTLLG-IAGDAGVGTIKFLLSVVVAGCLFPY----GPQLVAAGRSFLS 184

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            + P   +    +    IR+   G+  IA+ + L+ G  + LAG+P    L ++  ++++
Sbjct: 185 RIVPEQSEHFLDLAGATIRAVAQGVIGIAVVQALLAGIGFKLAGIPIAGLLALLVLLLSI 244

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +  G  I    V I++    ++  A  L L+  I + I+D  L+P ++G  +  P L   
Sbjct: 245 VQIGGAIIMLPVMIWIWTDKDVTVAVLLTLFLGI-VSILDNILKPLVMGRGLTTPALVIL 303

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            G++GG    G++GLFIGP+++++   +    I   + +    ++
Sbjct: 304 IGVIGGTLGHGIVGLFIGPIVLSVAWELTVAWIRTDRASAASQAT 348


>gi|312131790|ref|YP_003999130.1| hypothetical protein Lbys_3116 [Leadbetterella byssophila DSM
           17132]
 gi|311908336|gb|ADQ18777.1| protein of unknown function UPF0118 [Leadbetterella byssophila DSM
           17132]
          Length = 343

 Score =  155 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 68/360 (18%), Positives = 141/360 (39%), Gaps = 22/360 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M    ++ + I + +++  I+ S       L  +    L+A+ +       Y     +K 
Sbjct: 1   MASPQISNRIINQIVLIIAIVFSCLLIFHYLNYYLPGFLAAITLYIVYREWYFRLTEQKR 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
            +    A++     +   ++PL  L  Y +  +   +       Q    V  ++S  P  
Sbjct: 61  WNKVLTALLFIFFSIVFIVLPLWGLIDYMIPRLSVFLDNTDSIMQKFNQVKEYMSKKPVL 120

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
                                      + +  + ++  R      +  L+++     L+F
Sbjct: 121 ENID----------------LSDEALADFLQSLTKYLPRILNSVAEVLLNMLVAFFVLYF 164

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
               G  +  QL     +      +++   +  ++R+  +G+ I+ + +GLV    Y+L 
Sbjct: 165 MLVSGRKLENQLTHFFPY-SEVSRQELWSEIKLMVRTNAIGIPILGMCQGLVAMLGYYLF 223

Query: 237 GVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
           GV + V  G++T +  + P  G    +  + I     G   NA  L L+    +  +D  
Sbjct: 224 GVENAVLWGIVTGVATVFPVLGTMAVYVPICIVSFATGEWTNALWLTLYCFFLVGGIDNV 283

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           LR  L+     +  L T FG++ G++  G+LGL  GP+L++ +AV++K  +      KEK
Sbjct: 284 LRFTLLKTLGNVHPLITVFGVLLGLKLFGMLGLIFGPLLLSSVAVLFKVYLNEYGRPKEK 343


>gi|213026539|ref|ZP_03340986.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 307

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 55/296 (18%), Positives = 109/296 (36%), Gaps = 7/296 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  I   +WP+            +   ++ T+ ++ L
Sbjct: 18  LFLAIMIVACLWIVQPFILGFAWAGTIVIATWPVLLKLQKILWGRRSLAVLVMTLLLVLL 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           F++P+  L    +     L+   V      +P   WL++IP  G      W   L    S
Sbjct: 78  FVIPVALLVNSIVDGSGPLI-HAVTGGDMTLPDLAWLNNIPLVGAKLYAGWHSLLDMGGS 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G   +   L ++F  +     Y  G  ++  +    
Sbjct: 137 AIMAKVRPYIGTTTIWFVGQAAHIGRFMMHCALMLLFSAL----LYWRGEQVAMGIRHFA 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  
Sbjct: 193 CRLAAKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGVGLAISGVPYATLLTVVMILSC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  G         I+L   G+    T L +W A  +  +D  +RP L+     LP
Sbjct: 253 LVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSA-VVGTLDNVIRPVLIRMGADLP 307


>gi|91223164|ref|ZP_01258430.1| hypothetical protein V12G01_04956 [Vibrio alginolyticus 12G01]
 gi|91191977|gb|EAS78240.1| hypothetical protein V12G01_04956 [Vibrio alginolyticus 12G01]
          Length = 382

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 59/340 (17%), Positives = 133/340 (39%), Gaps = 8/340 (2%)

Query: 9   QGIMRWMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +  +R  ++F++L+  Y  +K F  PV+   II     P+               A    
Sbjct: 19  ESAIRIGLIFVLLMFTYDIIKPFILPVIWGAIIAVALMPLTQKLQRVYGGRRGLAATTIA 78

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKH 126
           +  + L + PL+ +    +      +  +             ++D P  G    E+WT  
Sbjct: 79  LLGIVLLVTPLVMVSGSIVDGATHALEVLQNGQVKIPGPKPSVADWPIVGDKLYEVWTLF 138

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            ++ +         +K      +       G + L      I      +       S + 
Sbjct: 139 ATNLEQAIQTFMPQIKAGLTSLLGTLGGVLGSLLLSILSLAIAAGFMTY-----SESAAS 193

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L ++         K  + ++   I+S  LG+  +A  + L++G+ +++ GVP+   L +
Sbjct: 194 GLRTIAIRTAGENAKSWTTLIAATIKSVLLGVVGVAAIQALLIGAGFFVFGVPAAGLLTL 253

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +  I+ +    A ++   V  ++ +  +   AT   +W  +   + +   +P L+G  + 
Sbjct: 254 LLMILCIAQLPALLAVLPVIGFMYMTQDTSTATMFTVW-VVVAALSENLFKPMLMGRGVD 312

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           +P      G +GG+   G++GLF+G V++A+   ++   +
Sbjct: 313 VPMPVILLGAIGGMLFYGIVGLFLGAVILAIWYELFVWWL 352


>gi|312880432|ref|ZP_07740232.1| protein of unknown function UPF0118 [Aminomonas paucivorans DSM
           12260]
 gi|310783723|gb|EFQ24121.1| protein of unknown function UPF0118 [Aminomonas paucivorans DSM
           12260]
          Length = 373

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 69/342 (20%), Positives = 126/342 (36%), Gaps = 11/342 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS--TFLAVIATVSVMCLFIVPLLF 80
           + +       P+  + +  + ++P Y     +          A + T  ++    +PL  
Sbjct: 31  TCWMALPLLRPLAWSAVFSYFAYPAYRFLHQRVFGGRWANLAAALTTGIILLFLAIPLGT 90

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           +      E   L   +       +P+                    L          +  
Sbjct: 91  VAVSLGREAVRLYGVLSEW----LPLLDREGVDALLSRVHASGASVLGPLFFRVPELKAL 146

Query: 141 LKTNGIDF---IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
           L   G      +   +            S++ + I+ FF  RDG ++   +  L   L  
Sbjct: 147 LGETGRWVGAGLTALSRGMVANAFHSFFSLVVITISSFFLVRDGRAMVAFVGDLLP-LPF 205

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG- 256
              K +S    K++++   G+   A  +  + G  +W  G+P  V  G    +  MIP  
Sbjct: 206 HEKKALSLRTQKMLQAVVYGIMFTAAIQATLGGLGWWFVGLPHPVFFGGAMFVTGMIPFV 265

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           G P+ +    I LL+ G+      L LWG   +  VD  LRP  +    K   L  F G+
Sbjct: 266 GTPVVWAPGGIVLLMTGHTQEGVLLLLWGGGVVSTVDNFLRPLFISEGSKAHVLLVFVGV 325

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +GG+   G LGLF+GP+L++L   + +     ++E + + SS
Sbjct: 326 LGGLAAWGFLGLFLGPMLLSLSLFLLESYRTILREGERRASS 367


>gi|294141912|ref|YP_003557890.1| hypothetical protein SVI_3141 [Shewanella violacea DSS12]
 gi|293328381|dbj|BAJ03112.1| conserved hypothetical protein [Shewanella violacea DSS12]
          Length = 371

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 142/346 (41%), Gaps = 7/346 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              I   +I  + +     +K F  P++   II  T +P+ S    K   S    + + T
Sbjct: 18  DAVIKIAVIFLVAIWCFEIIKPFIMPIVWGGIIAVTLFPLVSQLSKKSSLSLARASALVT 77

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKH 126
           +  + L ++P        +   ++ + ++        P    ++++P  G      W + 
Sbjct: 78  LVSLALLLIPAFLFSGALVSSTQDFIGEIQQGTLVIPPPKESVAELPLIGNKLYSFWDQS 137

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            ++  S+       +K      +      FGM  L + +SII   +       +    S+
Sbjct: 138 STNLASVIKTHSVEIKAVLAKAVSALGG-FGMTVLQFVISIIIAGV----LMTNAKGASE 192

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
               +   L  +Y K+++++    +RS   G+  +A  + ++ G    + GVP+     +
Sbjct: 193 VCQKIAIRLAGSYGKELTKLSVATVRSVVQGVIGVAFIQSILSGIGMGVVGVPATGIWML 252

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +  ++A++     +    + +Y+    +   A    +WG I +   D  L+P L+G  + 
Sbjct: 253 VVLLLAIVQLPPILILAPIMVYVFSVESTSVAIMFMVWG-ILVSASDAILKPMLMGRGVD 311

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           +P L    G +GG+   G++GLF+G V+M L   ++   I A  E 
Sbjct: 312 IPMLVILLGAIGGMLMSGVVGLFVGAVVMGLGYKLFIAWIDAEPET 357


>gi|145222657|ref|YP_001133335.1| hypothetical protein Mflv_2069 [Mycobacterium gilvum PYR-GCK]
 gi|145215143|gb|ABP44547.1| protein of unknown function UPF0118 [Mycobacterium gilvum PYR-GCK]
          Length = 391

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 61/355 (17%), Positives = 136/355 (38%), Gaps = 7/355 (1%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
            +  +N +  +  + +  +    YFL+ +   +  + ++ +  +P+Y    ++    +  
Sbjct: 3   DDFTVNQKRALAVLTVVALGFGAYFLRTYVLLIAVSAVLAYLFFPLYRRLRTRMG--TGG 60

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA--NQHGIPVPRWLSDIPGGMWA 119
            A     + + +  +PL  + +   L++ ++VS +           + + L D    + A
Sbjct: 61  AAATTLFAAIAIVGLPLSGVVFLAFLQISQMVSGIGHWVEQTDLTALGQRLLDSGNELLA 120

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              +      P+S++      L  N  +    FA       +     +I  +        
Sbjct: 121 RVPFVNFTLTPESVRDAIGR-LGQNAGEIALGFARDSVGGIVSTVTGVIIFLYVFLALLT 179

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           +G  +      L   L           +  ++ +T  G  IIA  +G+    + ++AG+ 
Sbjct: 180 NGDKVLDLFRDLNP-LGDKVSDIYLAKIGAMVSATVKGQFIIAACQGVAGAISVYIAGIH 238

Query: 240 SHVALGVI-TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           +   + VI   +++ IP G+ I    + I + I GN      + ++  I    +D  LRP
Sbjct: 239 NGFFMFVIFLTVLSFIPLGSGIVVIPLGIGMAIFGNPVGGIFVVVFHIIATTNIDNLLRP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           FLV     L        +  G++  G +G+ +GPVLM +I        +  ++  
Sbjct: 299 FLVPRSAHLHPALMLLAVFAGLQMFGFIGIVLGPVLMIVIVTTISVYRVVYRDAP 353


>gi|36958669|gb|AAQ87137.1| Hypothetical protein RNGR00112 [Sinorhizobium fredii NGR234]
          Length = 355

 Score =  154 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/345 (21%), Positives = 128/345 (37%), Gaps = 13/345 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   I   I+V       F   +  AL++     P++              A  A  
Sbjct: 15  ELVILVAIAAGIVVCYLLAVPFLPALTWALVLAIMFHPLHRRIAKDLPF-PDIAAAAAVA 73

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               + +VPL  +    + E       +  A + G                +      L 
Sbjct: 74  IAAFVVVVPLTLVAERLVNEAASGAQIIAEALRTGG----------WREAIANYPRIGLV 123

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                  L    L  N    +  F++      +   + ++     LF+F RDG      L
Sbjct: 124 LLWMESQLDLAGLAGNAAALLTNFSASLVRRSVVQIIDVVLTFYFLFYFLRDGREALNVL 183

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 L  +   ++   V + + +   G   +AI +G + G  +WL G+PS +  G+  
Sbjct: 184 KDYFP-LRSSEMDRLFFRVSETVHAIVFGTFAVAIVQGTLGGLMFWLLGLPSPLLWGLAM 242

Query: 249 AIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++AM+P  GA I +   ++ L + G    A  L  WGA  +  VD  L P  VG  +KL
Sbjct: 243 GLLAMVPVLGAFIIWIPAALSLALTGEWGKALILTAWGAGVVATVDNLLYPIFVGDRLKL 302

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             + TF  ++GGV   G  GL IGPV   +  ++        +E+
Sbjct: 303 HTVVTFMSMIGGVIVFGPAGLVIGPVTFTVTLLLLDIWCTHHRES 347


>gi|32474562|ref|NP_867556.1| permease [Rhodopirellula baltica SH 1]
 gi|32445101|emb|CAD75103.1| probable permease [Rhodopirellula baltica SH 1]
          Length = 664

 Score =  154 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 116/256 (45%), Gaps = 4/256 (1%)

Query: 97  VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
             A +    V  W++ + GG   S+L        +    L     ++    F+ R  S  
Sbjct: 397 QPAVKTAAAVRSWMNQLLGGSLRSQLSLIANPDEKDFSSLIRMARESLQPRFV-RLTSAT 455

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
           G I +     ++ ++++++FF  DG  + + L  L   +  AY  ++     +  R+  L
Sbjct: 456 GSIVVQVIFGLVILVVSVYFFLIDGPVMIRTLMRLSP-MDDAYEHQLLTEFDRTSRAVVL 514

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYL-LIKGN 274
                A+ +G++    +WL G    V L  +T++MA++P  GA   +   +++L L+   
Sbjct: 515 ASVASAVVQGILATIGFWLCGFDQIVLLLFLTSVMALVPFLGAASVWVPCALWLGLVDQR 574

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
              A  L ++GA  +  +D  ++ +++ G  +L  L     ++GGV   G +G+ +GP++
Sbjct: 575 WIAAAFLAIYGAAVVSSIDNVIKVYVLHGRSQLHPLFALLSVIGGVSVFGPIGILVGPMV 634

Query: 335 MALIAVIWKESIMAIK 350
           +  +  + +     +K
Sbjct: 635 VVFLQTLLEILNHELK 650



 Score = 66.0 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 15  MIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +++ I+ V + F   + GFF P+  A ++     P++     K        A   T  ++
Sbjct: 109 LVIGILAVGVLFYRLMIGFFVPLFLAALLVVIFRPVHLWIFEKVGRRRRLAAGTTTALIL 168

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLAN 100
            + ++PL  L      +   L+SK+ L+N
Sbjct: 169 FIVLLPLGVLVSVATTQFTILLSKMNLSN 197


>gi|323138131|ref|ZP_08073204.1| protein of unknown function UPF0118 [Methylocystis sp. ATCC 49242]
 gi|322396593|gb|EFX99121.1| protein of unknown function UPF0118 [Methylocystis sp. ATCC 49242]
          Length = 351

 Score =  154 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 70/334 (20%), Positives = 139/334 (41%), Gaps = 18/334 (5%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + +  + V+L     F + +  AL++       + +  +      +F A ++ + V  + 
Sbjct: 27  LTLVFVAVTLLLAAPFLSSLTWALVLAVVFLRPHRAIEAVMG--RSFGAALSVLIVALII 84

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL--WTKHLSHPQS 132
           + PL F+    + E  E  + +      G    +W+  +    W   +  W +     Q 
Sbjct: 85  VGPLAFVSERLINEAVEGAAYIQQEVTQG----KWVDFLKAHPWLETVNNWIEGQFDLQD 140

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           +      FL   G  FI +   +         L+++     LFFF RD  +  + L  L 
Sbjct: 141 VLSRVGAFLTNAGALFIRQSTGQ--------ALTVLLSFYMLFFFLRDRKAGVEALLRLS 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                   +K+   +   I +   G   +A  +G + G  +W    PS V   +I  ++A
Sbjct: 193 P-FSDIETRKLIVRIRDTIYAIIYGTLAVAALQGALGGFIFWWLNFPSPVFWALIMGLLA 251

Query: 253 MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++P  G  + +   +I+L I+G   +A  L LWG + +   D  +RP L+   ++L   P
Sbjct: 252 IVPVLGTFVVWVPATIFLAIEGRWADALTLGLWGGVVIASSDNLVRPLLISDTLRLHTAP 311

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            F  ++GG++  G  GL +GP+ M   +++ +  
Sbjct: 312 AFIAMLGGIQLFGPSGLVLGPIAMTTTSLMLEFW 345


>gi|186471214|ref|YP_001862532.1| hypothetical protein Bphy_6456 [Burkholderia phymatum STM815]
 gi|184197523|gb|ACC75486.1| protein of unknown function UPF0118 [Burkholderia phymatum STM815]
          Length = 367

 Score =  154 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 62/339 (18%), Positives = 131/339 (38%), Gaps = 7/339 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  + +        F   ++ ALI+  T +P+              +A +  +    + 
Sbjct: 24  LIAVLAVFCFRIFVPFLNLMVWALILAITLYPLQVRLRRALGGKDGLVATLIILIAFGVI 83

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQSL 133
           +VP   L       ++  +  V   N    P    ++  P  G    + W    +    L
Sbjct: 84  LVPTYMLGLAVADSIEHAMGIVKSGNFRIPPPADSVASWPVVGQRVYDFWQAASTDITGL 143

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                  LK   +  +       G   L + +++I   I    F   G    +    +  
Sbjct: 144 AQKFAPQLKGAAVVLLETVTG-LGAGLLIFFVALIVAGI----FMAHGEKGYRSAVQIAS 198

Query: 194 HLF-PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            +  P    +I+ +    IR+   G+  IA  + L++G  + + G+P    L +   ++ 
Sbjct: 199 RISGPDNGAQIADLCTATIRAVAQGVVGIAFIQMLLIGIGFVVMGIPGAGLLALAVLLIG 258

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++   A +    V +++++   +  AT +F        + D  L+P L+G  + +P    
Sbjct: 259 IMQLPATLITVPVIVFVIVTEGVSTATIIFSVYVFVAGLADNVLKPLLLGRGVAVPMPVV 318

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             G +GG+ T G++GLFIGPV++A+   ++   +    +
Sbjct: 319 LIGALGGMVTGGVIGLFIGPVMLAVGYELFWRWVRDQPQ 357


>gi|153808104|ref|ZP_01960772.1| hypothetical protein BACCAC_02390 [Bacteroides caccae ATCC 43185]
 gi|149129007|gb|EDM20223.1| hypothetical protein BACCAC_02390 [Bacteroides caccae ATCC 43185]
          Length = 341

 Score =  154 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 70/352 (19%), Positives = 145/352 (41%), Gaps = 31/352 (8%)

Query: 15  MIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +I+ I+ + +   +    F   +L AL +        +    K++   +  A++ T   +
Sbjct: 12  LIVIILFMGVIIFRQITPFLGGLLGALTMYILVRTHMNYLTEKRKMKRSISALLITAETI 71

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +F+VPL  + +  + +++++        +    V  ++ +                   
Sbjct: 72  MVFLVPLGLIIWLVVNKLQDINLAPQTFIEPIQQVAEFIKE------------------- 112

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFL----DYCLSIIFMIIALFFFYRDGFSISQQ 187
                    L  + + FI     R G I +       +++  MI  L+F    G  +   
Sbjct: 113 ---KTGYDVLGKDTLSFIVSILPRIGQIIMEGASSLAVNLFVMIFVLYFMLIGGKKMEAY 169

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           ++ +      A  +++ R +  ++RS  +G+ ++AI +G V    Y + G P+ + LG +
Sbjct: 170 VNDILP-FNEANTQEVIREINMIVRSNAIGIPLLAIIQGGVAMIGYLIFGAPNILLLGFL 228

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T    +IP  G  + +  V+ YL I G+ F+A  L  +GAI +   D  +R  L      
Sbjct: 229 TCFATIIPMVGTALVWFPVAAYLAISGDWFHAIGLAAYGAIVVSQSDNLIRFILQKKMAD 288

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
              L T FG+V G+   G +G+  GP+L++L  +          + +  + S
Sbjct: 289 THPLITIFGVVIGLPLFGFMGVIFGPLLLSLFFLFVNMFKKEYLDLRNNLPS 340


>gi|242279199|ref|YP_002991328.1| hypothetical protein Desal_1727 [Desulfovibrio salexigens DSM 2638]
 gi|242122093|gb|ACS79789.1| protein of unknown function UPF0118 [Desulfovibrio salexigens DSM
           2638]
          Length = 365

 Score =  154 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 57/330 (17%), Positives = 128/330 (38%), Gaps = 8/330 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +K F   ++ ++++    +P+      +        A +    ++   I+P +  F   
Sbjct: 34  VIKPFINTIIISVVLSGIFYPLSKKICCRLGGRPALGAFLTVCIIIFAIIIPAVVFFLGL 93

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET---FLK 142
           + +  + V+ +    +        L D        + + +     +      +     + 
Sbjct: 94  IGQGVDSVTAINEWLRTTDF--STLFDSQHYSTYLQWFEQKFPFFEISSSDIQARVLEIS 151

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            +    +    +             + M   +F F +DG     ++  L   L       
Sbjct: 152 RSFGQAMLTTGTWLAANMASLVAHFLIMNFLVFSFLKDGERFIDRVRYLSP-LRAEQEDF 210

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPIS 261
           I   + KV +S   G   IA  +G+V G    +AG+P  +  G + +  ++IP  G  + 
Sbjct: 211 IIESLRKVSKSVLFGSLFIAFLQGIVGGIGLAIAGIP-ALFWGTMMSFASLIPVLGTGLI 269

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +   +IYLLI G +  A  L +W  + +  +D  LRP +V    ++  +  F  ++GG+ 
Sbjct: 270 WVPATIYLLIVGKLKIAVFLLIWCGVLVTGIDTVLRPMIVREASRVSTIYVFLAILGGIN 329

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             G LG+  GP++++ + V+     +  ++
Sbjct: 330 AFGPLGILYGPLILSFLMVMLHIYGVEYQD 359


>gi|269967144|ref|ZP_06181211.1| hypothetical protein VMC_26410 [Vibrio alginolyticus 40B]
 gi|269828281|gb|EEZ82548.1| hypothetical protein VMC_26410 [Vibrio alginolyticus 40B]
          Length = 382

 Score =  154 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 59/340 (17%), Positives = 133/340 (39%), Gaps = 8/340 (2%)

Query: 9   QGIMRWMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +  +R  ++F++L+  Y  +K F  PV+   II     P+               A    
Sbjct: 19  ESAIRIGLIFVLLMFTYDIIKPFILPVIWGAIIAVALMPLTQKLQRVYGGRRGLAATTIA 78

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKH 126
           +  + L + PL+ +    +      +  +             ++D P  G    E+WT  
Sbjct: 79  LLGIALLVTPLVMVSGSIVDGATHALEVLQNGQVKIPGPKPSVADWPIVGDKLYEVWTLF 138

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            ++ +         +K      +       G + L      I      +       S + 
Sbjct: 139 ATNLEQAIQTFMPQIKAGLTSLLGTLGGVLGSLLLSILSLAIAAGFMTY-----SESAAS 193

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L ++         K  + ++   I+S  LG+  +A  + L++G+ +++ GVP+   L +
Sbjct: 194 GLRTIAIRTAGENAKSWTTLIAATIKSVLLGVVGVAAIQALLIGAGFFVFGVPAAGLLTL 253

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +  I+ +    A ++   V  ++ +  +   AT   +W  +   + +   +P L+G  + 
Sbjct: 254 LLMILCIAQLPALLAVLPVIGFMYMTQDTSTATMFTVW-VVVAALSENLFKPMLMGRGVD 312

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           +P      G +GG+   G++GLF+G V++A+   ++   +
Sbjct: 313 VPMPVILLGAIGGMLFYGIVGLFLGAVILAIWYELFVWWL 352


>gi|218247850|ref|YP_002373221.1| hypothetical protein PCC8801_3084 [Cyanothece sp. PCC 8801]
 gi|257060829|ref|YP_003138717.1| hypothetical protein Cyan8802_3036 [Cyanothece sp. PCC 8802]
 gi|218168328|gb|ACK67065.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 8801]
 gi|256590995|gb|ACV01882.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 8802]
          Length = 363

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 62/334 (18%), Positives = 138/334 (41%), Gaps = 7/334 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           ++I F++      ++ F   +L  +I+    +P++    ++          I  +  + +
Sbjct: 18  FLIGFLLSWCFALVRPFIEIILWGIILAIAIFPLFLWLKARIGGRGKLAGTIIILLGVSV 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQS 132
            I P+  +    +  ++ + + +   +    P P  ++  P  G + + +W     +  +
Sbjct: 78  IIGPVSVIATVFVNNVETVTNSLASGSLAVPPPPEGVAKWPVIGQYVNRIWQSASVNLIT 137

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           +       L+      +   A+  G++ L + +SII   I       +   ++++   + 
Sbjct: 138 VLSQFRPQLEDLATKLVF-LAANMGLLLLKFIVSIIIAGI----LMINAQGLNRRASQVI 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L P   +    +    IRS   G+  +AI + L++     +A +P    L +++ ++ 
Sbjct: 193 LRLTPQQGQGFLELATATIRSVTRGIIGVAILQTLLIALGLMVAKIPFAGLLALLSLVLC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +I  G  I      IY         A    LW  +   +VD  L+P L+   + +P L  
Sbjct: 253 IIQIGPGIVVLGCIIYAWSTMGTLGALLFTLW-MVPTTLVDNVLKPILMAQGLPVPTLII 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
             G++GG    G+LGLFIGPV+++L   +    +
Sbjct: 312 LIGVLGGTLVHGILGLFIGPVILSLGYQLIVAWV 345


>gi|237715047|ref|ZP_04545528.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262409005|ref|ZP_06085550.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294645608|ref|ZP_06723301.1| putative membrane protein [Bacteroides ovatus SD CC 2a]
 gi|229444880|gb|EEO50671.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262353216|gb|EEZ02311.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292639053|gb|EFF57378.1| putative membrane protein [Bacteroides ovatus SD CC 2a]
 gi|295087834|emb|CBK69357.1| Predicted permease [Bacteroides xylanisolvens XB1A]
          Length = 341

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/352 (19%), Positives = 141/352 (40%), Gaps = 31/352 (8%)

Query: 15  MIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +I+ I+ + +   +    F   +L AL I           + K++   +  A++ T   +
Sbjct: 12  LIVIILFMGIIIFRQITPFLGGLLGALTIYILVRGQMRYLVEKRKLKRSLSALLITAETI 71

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +F++PL    +  + +++++             V  ++ +                   
Sbjct: 72  FVFLIPLGLTVWMVVNKLQDINLDPQTYIAPIQQVAEFIKE------------------- 112

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFL----DYCLSIIFMIIALFFFYRDGFSISQQ 187
                    L  + + FI     R G I +       +++  MI  L+F    G  +   
Sbjct: 113 ---KTGYDVLGKDTLTFIVSILPRIGQIIMESISSLAINLFVMIFVLYFMLIGGKKMEAY 169

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           ++ +         +++   +  ++RS  +G+ ++AI +G V    Y L G P+ + LG +
Sbjct: 170 VNDILP-FNETNTQEVIHEINMIVRSNAIGIPLLAIIQGGVATIGYLLFGAPNILLLGFL 228

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T    +IP  G  + +  V+ YL I G+ FNA  +  +GAI +   D  +R  L      
Sbjct: 229 TCFATIIPMVGTALVWFPVAAYLAISGDWFNAIGIAAYGAIVVSQSDNLIRFILQKKMAD 288

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
              L T FG+V G+   G +G+  GP+L+AL  +          + +  + S
Sbjct: 289 THPLITIFGVVIGLPLFGFMGVIFGPLLLALFFLFVDMFKKEYLDLRNNLPS 340


>gi|308050578|ref|YP_003914144.1| hypothetical protein Fbal_2868 [Ferrimonas balearica DSM 9799]
 gi|307632768|gb|ADN77070.1| protein of unknown function UPF0118 [Ferrimonas balearica DSM 9799]
          Length = 369

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 60/345 (17%), Positives = 134/345 (38%), Gaps = 7/345 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I+ +++     ++ FF PVL   I+    +P++  F  +  +     A + T+  + + 
Sbjct: 23  LILVLLIWCFQIIRPFFMPVLWGAILAVALYPLHLGFSRRLGDKPKLSATLITLIALAIL 82

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQSL 133
           ++P  F+    +    ++  ++        P  + +   P  G  A E+W +   + +  
Sbjct: 83  LLPTFFVASAMISGASDVAQQLETEAFEVPPPTQKVQQWPVIGERAYEIWQQASHNLERF 142

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                  +K      +  F      + L       F I+    F   G +  + +  + +
Sbjct: 143 LTTHAESIKQYLTSVLQTFGGVLSTVAL-----FTFSILISGVFLATGPACGKGIQLMAD 197

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            L       +  +  + +RS   G+  +A  + +  G    L GVP      ++  I+A+
Sbjct: 198 RLTGHAGSPLPVLAARTVRSVAQGVLGVAFIQAMAAGVGMALMGVPFTGLWTLLILILAI 257

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
                 +    V  Y+    +   A    +W  I +   D  L+P L+G  + +P L   
Sbjct: 258 AQLPPILVLAPVIAYVFSVSSGLPAILFTVWS-ILVSASDGLLKPLLLGKGLNIPTLVIL 316

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            G +GG+   G++GLF+G V++A+   + +  +       + +  
Sbjct: 317 LGAIGGMMMSGIIGLFVGAVVLAVGYTLLEAWLTGEGLQAQSVEK 361


>gi|299146703|ref|ZP_07039771.1| conserved hypothetical protein [Bacteroides sp. 3_1_23]
 gi|298517194|gb|EFI41075.1| conserved hypothetical protein [Bacteroides sp. 3_1_23]
          Length = 341

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 142/352 (40%), Gaps = 31/352 (8%)

Query: 15  MIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +I+ I+ + +   +    F   +L AL I        +  + K++   +  A++ T   +
Sbjct: 12  LIVIILFMGVIIFRQITPFLGGLLGALTIYILVRGQMNHLVEKRKLKRSISALLITAETI 71

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +F++PL    +    +++++             V  ++ +                   
Sbjct: 72  FVFLIPLGLTVWMVANKLQDINLDPQTYIAPIQQVAEFIKE------------------- 112

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFL----DYCLSIIFMIIALFFFYRDGFSISQQ 187
                    L  + + FI     R G I +       +++  MI  L+F    G  +   
Sbjct: 113 ---KTGYDVLGKDTLSFIMSILPRIGQIIMESISSLAINLFVMIFVLYFMLIGGKKMEAY 169

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           ++ +         +++   +  ++RS  +G+ ++AI +G V    Y L G P+ + LG +
Sbjct: 170 VNDILP-FNETNTQEVIHEINMIVRSNAIGIPLLAIIQGGVAMIGYLLFGAPNILMLGFL 228

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T    +IP  G  + +  V+ YL I G+ FNA  LF +GAI +   D  +R  L      
Sbjct: 229 TCFATIIPMVGTALVWFPVATYLAISGDWFNAIGLFGYGAIVVSQSDNLIRFILQKKMAD 288

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
              L T FG+V G+   G +G+  GP+L++L  +          + +  + S
Sbjct: 289 THPLITIFGVVIGLPIFGFMGVIFGPLLLSLFFLFVDMFKKEYLDLRNNLPS 340


>gi|160891098|ref|ZP_02072101.1| hypothetical protein BACUNI_03545 [Bacteroides uniformis ATCC 8492]
 gi|270294399|ref|ZP_06200601.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317481005|ref|ZP_07940085.1| hypothetical protein HMPREF1007_03204 [Bacteroides sp. 4_1_36]
 gi|156859319|gb|EDO52750.1| hypothetical protein BACUNI_03545 [Bacteroides uniformis ATCC 8492]
 gi|270275866|gb|EFA21726.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316902898|gb|EFV24772.1| hypothetical protein HMPREF1007_03204 [Bacteroides sp. 4_1_36]
          Length = 340

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 59/333 (17%), Positives = 133/333 (39%), Gaps = 20/333 (6%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +  F   +L AL I             K++   +  A + T   +  F+VPL  + +  +
Sbjct: 27  IAPFMGGLLGALTIYILVRKQMMYLSDKRKMKRSIAATLITAEAILCFLVPLGLVVWLAV 86

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
           + ++                   ++  P  + A      ++   ++   +         I
Sbjct: 87  VNLQN------------------INLDPQAIIAPFEEAANIIKAKTGYYILGKDTVAYVI 128

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +PR           + ++I  ++  L+F    G  + Q ++ L         + +   
Sbjct: 129 SILPRIGQAIMGGISSFAVNIFVLVFVLYFMLIGGKKMEQYVNDLLP-FNDDNTQNVIHE 187

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAV 265
           +  ++RS  +G+ ++A+ +G V    YW+ G P+ +  G +T   ++IP  G  + +  +
Sbjct: 188 INMIVRSNAIGIPLLAVIQGGVAMIGYWIFGAPNILFAGFLTCFASIIPMVGTALVWFPI 247

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++Y+ + GN   A  L ++G   +  +D  +R  +      +  L T FG+V G+   G 
Sbjct: 248 AVYMALIGNWVQAIGLAIYGGAVISQLDNLIRFIIQKKMADIHPLITVFGVVIGLSLFGF 307

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +G+  GP+L++L  +          + + K + 
Sbjct: 308 MGVIFGPLLLSLFFLFVDMFKRGYLDARGKTTE 340


>gi|160886195|ref|ZP_02067198.1| hypothetical protein BACOVA_04202 [Bacteroides ovatus ATCC 8483]
 gi|237723005|ref|ZP_04553486.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|260173678|ref|ZP_05760090.1| hypothetical protein BacD2_17520 [Bacteroides sp. D2]
 gi|315921940|ref|ZP_07918180.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156108080|gb|EDO09825.1| hypothetical protein BACOVA_04202 [Bacteroides ovatus ATCC 8483]
 gi|229447527|gb|EEO53318.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|313695815|gb|EFS32650.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 341

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 142/352 (40%), Gaps = 31/352 (8%)

Query: 15  MIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +I+ I+ + +   +    F   +L AL I        +  + K++   +  A++ T   +
Sbjct: 12  LIVIILFMGVIIFRQITPFLGGLLGALTIYILVRGQMNHLVEKRKLKRSISALLITAETI 71

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +F++PL    +    +++++             V  ++ +                   
Sbjct: 72  FVFLIPLGLTVWMVANKLQDINLDPQTYIAPIQQVAEFIKE------------------- 112

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFL----DYCLSIIFMIIALFFFYRDGFSISQQ 187
                    L  + + FI     R G I +       +++  MI  L+F    G  +   
Sbjct: 113 ---KTGYDVLGKDTLSFIMSILPRIGQIIMESISSLAINLFVMIFVLYFMLIGGKKMEAY 169

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           ++ +         +++   +  ++RS  +G+ ++AI +G V    Y L G P+ + LG +
Sbjct: 170 VNDILP-FNETNTQEVIHEINMIVRSNAIGIPLLAIIQGGVAMIGYLLFGAPNILMLGFL 228

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T    +IP  G  + +  V+ YL I G+ FNA  LF +GAI +   D  +R  L      
Sbjct: 229 TCFATIIPMVGTALVWFPVAAYLAISGDWFNAIGLFGYGAIVVSQSDNLIRFILQKKMAD 288

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
              L T FG+V G+   G +G+  GP+L++L  +          + +  + S
Sbjct: 289 THPLITIFGVVIGLPIFGFMGVIFGPLLLSLFFLFVDMFKKEYLDLRNNLPS 340


>gi|237756275|ref|ZP_04584832.1| putative membrane protein [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691557|gb|EEP60608.1| putative membrane protein [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 355

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 72/316 (22%), Positives = 140/316 (44%), Gaps = 4/316 (1%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
             F   +  ++++    +PI+    SK  ++S   ++I+T  ++   ++P   + ++   
Sbjct: 29  APFIGIITVSILLVVIFYPIHQKI-SKIVKNSVLNSLISTFIILTTLLLPFSLILFFLTK 87

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS-ELWTKHLSHPQSLKILSETFLKTNGI 146
           E+ EL   +     +   +   L + P       +L   +L+   +    S         
Sbjct: 88  EIIELYPLIADYITNPNLIVEKLKESPYLYKLYLKLQEFYLNKLDNNFHDSIINYLKQFT 147

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +  FA  F    +   ++I  M I +FF ++DG+ +   + S+   L       +   
Sbjct: 148 AIMFNFAKTFLSNIILIFIAIFIMAITIFFLFKDGYKLYNLVYSIIP-LEKEEKDYLFSN 206

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAV 265
               +++  LG   +AI + +     + +AGV   + L  +T   A IP GGA + +  V
Sbjct: 207 SYAAVQAVILGSVFVAIAQAIASLIGFLVAGVEYSLVLTFLTFFAAFIPFGGASLVWVPV 266

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +IYL++   +       L+G   +  VD  +RP +VG  I +  +  FF ++GG+ T G 
Sbjct: 267 AIYLIVSKGLLVGILFTLYGTFVISTVDNIIRPIVVGTKIDMHPMIMFFAIIGGLSTFGF 326

Query: 326 LGLFIGPVLMALIAVI 341
           LG+FI PV++ALI   
Sbjct: 327 LGIFIAPVIVALIDAF 342


>gi|298481866|ref|ZP_07000056.1| conserved hypothetical protein [Bacteroides sp. D22]
 gi|298272088|gb|EFI13659.1| conserved hypothetical protein [Bacteroides sp. D22]
          Length = 341

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/352 (19%), Positives = 141/352 (40%), Gaps = 31/352 (8%)

Query: 15  MIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +I+ I+ + +   +    F   +L AL I           + K++   +  A++ T   +
Sbjct: 12  LIVIILFMGIIIFRQITPFLGGLLGALTIYILVRGQMRYLVEKRKLKRSLSALLITAETI 71

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +F++PL    +  + +++++             V  ++ +                   
Sbjct: 72  FVFLIPLGLTVWMVVNKLQDINLDPQTYIAPIQQVAEFIKE------------------- 112

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFL----DYCLSIIFMIIALFFFYRDGFSISQQ 187
                    L  + + FI     R G I +       +++  MI  L+F    G  +   
Sbjct: 113 ---KTGYDVLGKDTLTFIVSILPRIGQIIMESISSLAINLFVMIFVLYFMLIGGKKMEAY 169

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           ++ +         +++   +  ++RS  +G+ ++AI +G V    Y L G P+ + LG +
Sbjct: 170 VNDILP-FNETNTQEVIHEINMIVRSNAIGIPLLAIIQGGVAMIGYLLFGAPNILMLGFL 228

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T    +IP  G  + +  V+ YL I G+ FNA  +  +GAI +   D  +R  L      
Sbjct: 229 TCFATIIPMVGTALVWFPVAAYLAISGDWFNAIGIAAYGAIVVSQSDNLIRFILQKKMAD 288

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
              L T FG+V G+   G +G+  GP+L+AL  +          + +  + S
Sbjct: 289 THPLITIFGVVIGLPLFGFMGVIFGPLLLALFFLFVDMFKKEYLDLRNNLPS 340


>gi|327543396|gb|EGF29821.1| permease [Rhodopirellula baltica WH47]
          Length = 645

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 116/256 (45%), Gaps = 4/256 (1%)

Query: 97  VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
             A +    V  W++ + GG   S+L        +    L     ++    F+ R  S  
Sbjct: 378 QPAVKTAAAVRSWMNQLLGGSLRSQLSLIANPDEKDFSSLIRMARESLQPRFV-RLTSAT 436

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
           G I +     ++ ++++++FF  DG  + + L  L   +  AY  ++     +  R+  L
Sbjct: 437 GSIVVQVIFGLVILVVSVYFFLIDGPVMIRTLMRLSP-MDDAYEHQLLTEFDRTSRAVVL 495

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYL-LIKGN 274
                A+ +G++    +WL G    V L  +T++MA++P  GA   +   +++L L+   
Sbjct: 496 ASVASAVVQGILATIGFWLCGFDQIVLLLFLTSVMALVPFLGAASVWVPCALWLGLVDQR 555

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
              A  L ++GA  +  +D  ++ +++ G  +L  L     ++GGV   G +G+ +GP++
Sbjct: 556 WIAAAFLAIYGAAVVSSIDNVIKVYVLHGRSQLHPLFALLSVIGGVSVFGPIGILVGPMV 615

Query: 335 MALIAVIWKESIMAIK 350
           +  +  + +     +K
Sbjct: 616 VVFLQTLLEILNHELK 631



 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 15  MIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +++ I+ V + F   + GFF P+  A ++     PI+     K        A   T  ++
Sbjct: 90  LVIGILAVGVLFYRLMIGFFVPLFLAALLVVIFRPIHLWIFEKVGRRRRLAAGTTTALIL 149

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLAN 100
            + ++PL  L      +   L+SK+ L+N
Sbjct: 150 FIVLLPLGVLVSVATTQFTILLSKMNLSN 178


>gi|288941027|ref|YP_003443267.1| hypothetical protein Alvin_1296 [Allochromatium vinosum DSM 180]
 gi|288896399|gb|ADC62235.1| protein of unknown function UPF0118 [Allochromatium vinosum DSM
           180]
          Length = 355

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 56/340 (16%), Positives = 133/340 (39%), Gaps = 7/340 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +++ +       +K F  P+   +II    +P Y    +         A +  V  + +
Sbjct: 19  ALLLVLAAWCFDIVKPFVIPIAWGIIIAVAQYPGYLRLRAWLGGRRRAAATLMVVIDLLV 78

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
            +VP + L    +   + L   +          P  + D P  G   +  W +   +   
Sbjct: 79  LLVPAVLLSDTLLDGAQNLAKGLQEGTLAVPRPPESIKDWPLVGEPLNVFWNQASQNLAE 138

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                   LK +    +   A   G   L + ++II     L        + ++   ++ 
Sbjct: 139 TAAKFAPQLKASAGWLLATVAGA-GFSVLQFIIAIIIAGALL----AHSDASAEFARAVA 193

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L     ++++R+   ++RS   G+  +A+ + ++ G  + + G+P+     ++  +++
Sbjct: 194 TRLAGEKGEELARLAETIVRSVTKGILGVALIQAILAGIGFMVMGIPAAGLWALLCLLLS 253

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
            +  G       + IY+    +   A    +W  + +  +D  L+P ++G  +++P    
Sbjct: 254 TVQIGIFPITLPILIYVFATADTVPAVLFLVWS-LIVGSLDNVLKPLVLGRGVQVPMAVI 312

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           F G +GG  + G++GLF+G V++ L   +    +    + 
Sbjct: 313 FVGAIGGFISSGIIGLFVGAVVLTLGYKLLLAWVYERPKE 352


>gi|225851276|ref|YP_002731510.1| membrane protein [Persephonella marina EX-H1]
 gi|225646547|gb|ACO04733.1| membrane protein [Persephonella marina EX-H1]
          Length = 355

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 66/312 (21%), Positives = 134/312 (42%), Gaps = 5/312 (1%)

Query: 44  SWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG 103
            +P+      K + S+   ++I+T  V    IVP + L  +   ++  L   ++ A   G
Sbjct: 45  FYPVKKKLDHKLK-STLLSSLISTAIVFMFIIVPSIVLIAFFTNQVISLYPVIIQAVSEG 103

Query: 104 IPVPRWLSDIPGGMWASELWTKHLS--HPQSLKILSETFLKTNGIDFIPRFASRFGMIFL 161
             +  +++ IP      +++ + L   H +         + +N  +F+        +   
Sbjct: 104 HTIEYYINQIPILSSIHKIFLQSLQTLHIEIDLNTVLRNILSNIANFLIEQGKSLFINIT 163

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
              + I  M++ +FF ++DG S+  ++  L   L       +       I+   LG  + 
Sbjct: 164 FLIIGIGIMLVTIFFLFKDGESLYDRVLKLIP-LPEKDKNFLLSKTYTAIQGVVLGSVLT 222

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATC 280
           AI +G++    Y+ AG+   +    IT I A +P GGA + +  ++IYL I         
Sbjct: 223 AIAQGILSFIGYFTAGLEFSLFWAFITFIAAFLPIGGASLVWIPIAIYLFISKGFLTGFL 282

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
             LWG   + +VD  ++P ++G    +  +  FF ++GG+   G +G+F+ P+++ LI  
Sbjct: 283 FALWGTFVISLVDNIIKPVVIGDKTNIHPVILFFAILGGLNLFGFIGIFLAPIVIVLIDN 342

Query: 341 IWKESIMAIKEN 352
           +           
Sbjct: 343 MLYLYAERFSSQ 354


>gi|310819626|ref|YP_003951984.1| hypothetical protein STAUR_2353 [Stigmatella aurantiaca DW4/3-1]
 gi|309392698|gb|ADO70157.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 363

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 63/349 (18%), Positives = 130/349 (37%), Gaps = 6/349 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  + +   +I+  I +    +  F      A ++    +  +          +   A +
Sbjct: 5   LVARRVFTGLILLSIFLLGVIVWPFANGFFLAAVLAGALYGTHKRLTRLLRGRNNLSAGL 64

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG--MWASELW 123
               V+   ++PL     + + E  + V  V    +        ++ +PG        L 
Sbjct: 65  LCFGVIVALLIPLTGFTAFLISEAADGVRFVSETLRTEG-TEGLVNQLPGAVRQPVQNLL 123

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +       L    +  + + G     R  +        +      M+IA FFF  DG  
Sbjct: 124 ERFAIEELKLDDKFQQQVSSTGGT-AARAVTGVVAATGSFAFQTTMMLIAFFFFLVDGKR 182

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + + ++S+   L      +I      V  +  +   + A  + +     Y +  VP    
Sbjct: 183 LVEWIESVAP-LKQGQTIEILLEFRHVSIAVLVSSVVTAGVQAVAALVGYLITQVPVPFF 241

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              +T  +A+IP  GA +     ++ LLI G+ + A  L +WG + + +VD  ++P L  
Sbjct: 242 FAAVTFFLALIPAIGAAVVCFVAALLLLITGHPWAALFLAIWGVVVVGLVDNIVKPLLAK 301

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             + +     FF L+GG+ + G +GL +GP+++A    + +        
Sbjct: 302 RGMDMHGAIIFFALLGGLASFGTVGLLLGPLIVAFFLALVRIYERDYGR 350


>gi|94310649|ref|YP_583859.1| hypothetical protein Rmet_1709 [Cupriavidus metallidurans CH34]
 gi|93354501|gb|ABF08590.1| hypothetical protein, putative membrane protein (permease)
           [Cupriavidus metallidurans CH34]
          Length = 388

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 59/340 (17%), Positives = 140/340 (41%), Gaps = 7/340 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I+ + +      K F + +  ++I+  T +P+ +    K  +     A +    V+C+ 
Sbjct: 24  LILLLAISCFEIFKPFISLMAWSVILAITLYPLQTYLRGKIFDGEGRTATLIVFLVICII 83

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
           +VP   L    +  ++  +      N    P    ++  P  G      W    +   SL
Sbjct: 84  LVPSCLLGIALIDSVEHALEIARSGNIRIPPPSESVAAWPFVGKQLYGFWHLASTDFASL 143

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                  +K   +  +   A   G+  L +  +++   I + +    G   ++    +  
Sbjct: 144 AEKLAPQIKVVALALLGT-ARGVGVGLLIFVAALMIAGIFMAY----GELGTRSAIQIAS 198

Query: 194 HLF-PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            +  P    +++ +    +R+   G+  IA  + L++G A+ + GVP    L +   ++ 
Sbjct: 199 RISGPERGPRLTVLCTATVRAVAQGVVGIAFIQMLLIGVAFVMKGVPGAGLLALAVLLLG 258

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++   A +    V I+++    +     +F        + D  L+P L+G  + +P    
Sbjct: 259 IMQLPATLITIPVIIFVIATEGVSGMNIVFAVYVFIAGLADNVLKPMLLGRGVDVPMPVV 318

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             G +GG+ + G++GLF+GPV++A+   ++ + +   ++ 
Sbjct: 319 LIGALGGMVSGGVIGLFVGPVVLAVGYQLFWQWVEDTQQQ 358


>gi|150400877|ref|YP_001324643.1| hypothetical protein Maeo_0445 [Methanococcus aeolicus Nankai-3]
 gi|150013580|gb|ABR56031.1| protein of unknown function UPF0118 [Methanococcus aeolicus
           Nankai-3]
          Length = 393

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 62/355 (17%), Positives = 145/355 (40%), Gaps = 11/355 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + + +  +  + L  +Y +  +   +  +  + + S P+Y     K        + I+++
Sbjct: 7   RLLFKLFVSLVSLSLIYTVFPYLDVLALSCALAYMSKPVYDKLKPKFG------SSISSM 60

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +   IVP++ + +  + ++ E +  + L NQ  I     +S I   +        +  
Sbjct: 61  MCLLFVIVPMVIIGFIILYQILEFLQFLNL-NQLDIQNLNLISLINYKLNYLSNILGYNI 119

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFL--DYCLSIIFMIIALFFFYRDGFSISQ 186
             +  +     ++        P  ++    + L  +  + +I  +   F+F +DG+ I  
Sbjct: 120 PIKLEEEKLSQYISLILSYLEPHISTAVSGLLLLPEIAIKLIMGVFITFYFLKDGYHIKN 179

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +       +    +   + + +  ++ F G  + ++   ++    Y++ GV + + L V
Sbjct: 180 IVLDNIPTEYQLKTQLYLKYLNESYQNLFTGTALTSVAIVIISFIGYFIFGVQNALLLSV 239

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGP 304
           +T I A++P  G    +  +S+Y LI G+   A  +F++G + L +  D  +RP +V   
Sbjct: 240 LTGIFALLPIVGGWGVYIPLSLYYLIIGDFVTAIGIFIFGWVFLSLAPDFVIRPHIVKKE 299

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             +  +      +    T+G+ G  IGP+L      ++K          EKI  N
Sbjct: 300 SDVHPVVVLLAFLVAPLTLGIAGFAIGPILFGAFDALFKVKSKIKYVENEKIKEN 354


>gi|94264995|ref|ZP_01288765.1| Protein of unknown function UPF0118 [delta proteobacterium MLMS-1]
 gi|94267189|ref|ZP_01290805.1| Protein of unknown function UPF0118 [delta proteobacterium MLMS-1]
 gi|93452098|gb|EAT02778.1| Protein of unknown function UPF0118 [delta proteobacterium MLMS-1]
 gi|93454542|gb|EAT04823.1| Protein of unknown function UPF0118 [delta proteobacterium MLMS-1]
          Length = 381

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 61/329 (18%), Positives = 133/329 (40%), Gaps = 7/329 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L  F + ++ + ++     PIY+    K        + +    V+ L  +PL+F     
Sbjct: 28  LLWPFLSILVLSFLLTSVFRPIYNLLNRKLP--ELVASFLTCTLVVLLVFIPLVFFVAAL 85

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             E + L     +A        R   +  +   +  +         P+ L        +T
Sbjct: 86  AQEAQGLYEWGRVAGAGLGEKLRTFQESLLFVRLQETAAALGFSLEPEQLGRTLADLART 145

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
            G+ ++   AS +    + +  S   M I +FF   +   +   +  L   L     +++
Sbjct: 146 AGL-YLYNQASGWAANVVMFVFSFFLMFITIFFLLIEQDRLLNYILRLSP-LPDQQERRL 203

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISF 262
                ++  +  +G  I A+ +G+V G  + L G+   V  G I A++A +P  G  +  
Sbjct: 204 FAKFDEITSAVLIGNGICAVIQGVVGGIIFALLGLGPPVLWGAIMAVLAFLPIFGIGLVM 263

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++Y+  KG++     L +   +    ++  L+P LVG  +++  L  F  ++GG+ +
Sbjct: 264 VPAALYMFFKGSLAGGIALLVLYGVLAVSIEYALKPKLVGQRVRMHTLLVFLSIIGGLSS 323

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            G LG+  GP+++     + +  +++   
Sbjct: 324 FGFLGIIYGPLIITAFLTLAEIYLVSYDR 352


>gi|119358137|ref|YP_912781.1| hypothetical protein Cpha266_2369 [Chlorobium phaeobacteroides DSM
           266]
 gi|119355486|gb|ABL66357.1| protein of unknown function UPF0118 [Chlorobium phaeobacteroides
           DSM 266]
          Length = 357

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 81/358 (22%), Positives = 160/358 (44%), Gaps = 6/358 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +T  + + I+  +++FI  V +  ++ F   +L A I      P+Y  F    + + +  
Sbjct: 2   DTRQSNRTILLVIVLFISAVFIAMIRYFLMALLMAAIFSALLMPLYHRFERWFQGNKSLS 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A +  ++++ + ++P L L    + +   L        Q  I  P   S     +     
Sbjct: 62  AGVTILALVLMVLLPSLALIGMVLAQALRLSRLAAPWVQQQIHEPGAFSRTLETLP---Y 118

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           + +   + + +      F  T G   +    S F +  ++    + F +  +FFF +DG 
Sbjct: 119 YHELEVYREDILKKIGEFAGTAGNMLLGAI-SSFTLSAVNELFLLFFFLYTMFFFLKDGR 177

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I  ++ S    L      ++      V R+T  G  ++ + +G + G A  LAG+ S +
Sbjct: 178 EILDKMLSYLP-LTEGVKSRLLEKFLSVTRATLKGSVVVGLVQGTLAGLALHLAGIDSAL 236

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             G I  +++ IP  G+P+ +    IYLL+ G    A  + L+ +I +  +D  LRP L+
Sbjct: 237 FWGAIMTLLSFIPVLGSPLVWVPAVIYLLLIGQYPQALGVLLFCSIIVGQIDNILRPILI 296

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G   K+  L  F G +GG+   G++G+ +GP++ AL   +W+    A  +  +++  N
Sbjct: 297 GRDTKMNELMIFLGTLGGLGLFGIIGIIVGPIVAALFVTVWEIYGEAFSDYLDEVRGN 354


>gi|29346881|ref|NP_810384.1| hypothetical protein BT_1471 [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29338779|gb|AAO76578.1| putative transmembrane protein [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 341

 Score =  152 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 67/352 (19%), Positives = 140/352 (39%), Gaps = 31/352 (8%)

Query: 15  MIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +I+ I+ + +   +    F   +L AL I        +    K +   +  A++ T   +
Sbjct: 12  LIVIILFMGIIIFRQITPFLGGLLGALTIYILVRTQMTHLTEKWKLKRSVAALLITAETV 71

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +F+VPL    +  + +++++             V  ++ +                   
Sbjct: 72  MVFLVPLGLTIWLLVNQLQDINLDPQTFIAPMQQVAEFIKE------------------- 112

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFL----DYCLSIIFMIIALFFFYRDGFSISQQ 187
                    L  + + FI     R G I +       +++  M+  L+F    G  +   
Sbjct: 113 ---KTGYDVLGKDTLSFIVSILPRIGQIIMESISSLAINLFVMVFVLYFMLIGGKKMEAY 169

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           ++ +      A  +++   +  ++RS  +G+ ++AI +G V    Y + G P+ + LG +
Sbjct: 170 VNDILP-FNEANTQEVIHEINMIVRSNAIGIPLLAIIQGGVAMIGYLIFGAPNVLVLGFL 228

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T    +IP  G  + +  V+ YL + G+ FNA  L  +G I +   D  +R  L      
Sbjct: 229 TCFATIIPMVGTALIWFPVAAYLAVTGDWFNAIGLAAYGGIVISQSDNLIRFILQKKMAD 288

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
              L T FG+V G+   G +G+  GP+L++L  +          + +  + +
Sbjct: 289 THPLITIFGVVIGLPLFGFMGVIFGPLLLSLFFLFVDMFKKEYLDLRNNLPA 340


>gi|269959791|ref|ZP_06174170.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835545|gb|EEZ89625.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 373

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 61/341 (17%), Positives = 125/341 (36%), Gaps = 7/341 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           +  +I      L  F   V+   II    +P+  S  ++   S    + + +   + L +
Sbjct: 21  VALLIWWCFSILSPFIMLVVWGGIIAIALYPVMMSLHNRLGISKGKASALLSTVGVLLLL 80

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLK 134
           +PL+ L         E+V+ +             L +IP  G           ++ +   
Sbjct: 81  IPLIALSSGLYTSGTEVVTGLQDGTLVVPKPQESLKEIPLVGDKLYVAINYASTNMEGFL 140

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           +     +K     F+ + AS  G +   + +  I   +    F  +     +    L + 
Sbjct: 141 VNYGEQVK----GFLSQAASIVGSVSGGF-IQFIISTMIAGAFMSNAEVCQKGFTKLADR 195

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L     + +  +    +RS   G+  +A+ + ++ G      GVP+     V   ++A++
Sbjct: 196 LTNKKGEALIDLSKSTVRSVVQGVIGVALIQSVMAGVGMVAVGVPAAALWMVAVILIAIV 255

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
                +      IY+    +   A    +W  I +   D  L+P L+      P L T  
Sbjct: 256 QLPPILXLIPAIIYVFSVESTLVAGIFLVWC-ILVSASDAVLKPVLLSRGSDTPMLVTLL 314

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G +GG+   G++GLF+G V+++L   +    +        K
Sbjct: 315 GALGGMAMSGIVGLFVGAVVLSLTYQLMVNWLDEDDTEANK 355


>gi|284165881|ref|YP_003404160.1| hypothetical protein Htur_2610 [Haloterrigena turkmenica DSM 5511]
 gi|284015536|gb|ADB61487.1| protein of unknown function UPF0118 [Haloterrigena turkmenica DSM
           5511]
          Length = 370

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 60/330 (18%), Positives = 127/330 (38%), Gaps = 11/330 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +      VL+A ++ F   P +     K     +  A++ T   +   ++PLL +    +
Sbjct: 23  IAPLLQYVLAAGLLAFVLRPAHERLEPKLGPRPS--AILLTGVAVVAAVIPLLLISAVVL 80

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
                 +++   A+          +D+        L  + +   ++          ++ +
Sbjct: 81  GTAVSFLNEFDEASVVESARGVAENDL-------GLEAQQIDAIEAAIHTEIESSLSSAV 133

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
           +       R     L+  + +   +  L++   DG  +   L  +   L P    ++   
Sbjct: 134 ELALGELIRLVNAGLELAIGLAVCVFLLYYLLVDGDDLVAWLGDVAP-LEPHVRDELFGE 192

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAV 265
           V  V  +      ++A+ +GL+ G    + G+P+     VI  +++ +P  G  + +   
Sbjct: 193 VRVVTWAVIHSHVLVAVVQGLLGGIGLAVVGIPNAAFWTVIMILLSFLPAIGVWLVWGPA 252

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           + YL   G+   A  L  +G   L +VD  LR   V     L       G++GG+  +G+
Sbjct: 253 AGYLATAGDPLAAVALLAYGLTILGLVDNYLRAIFVDRGSGLHPAAVIVGVIGGIYLLGV 312

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +GLF+GPVL+A+             E+  +
Sbjct: 313 MGLFLGPVLLAVFKAGVNVFTRVSVEDGNQ 342


>gi|218778346|ref|YP_002429664.1| hypothetical protein Dalk_0489 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218759730|gb|ACL02196.1| protein of unknown function UPF0118 [Desulfatibacillum alkenivorans
           AK-01]
          Length = 356

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 70/359 (19%), Positives = 147/359 (40%), Gaps = 17/359 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIIL---VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           M +   + Q I+ + +   I+      + L+ FF+ ++ A ++     PIY   + K   
Sbjct: 1   MEQDRKSHQMILIFFLALYIISIGFMGWLLRPFFSILVLAFVVTGVFTPIYRLLLKKM-- 58

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                + +  V +  +  +P L      + E    +  V  A      +P  +       
Sbjct: 59  KPGAASGLTCVIIFLVLFIPTLLFAGIVVSEAVGFLDMVNKA-----ALPDQIRTFINNS 113

Query: 118 WASELWTKHLSHPQSLKILSE-----TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
              E   +H+     +   +E     + +      F+           L + L+ +FM++
Sbjct: 114 TLLETINQHIDDYGIVISGAEITQAASQIGQFVGGFLLDSGKAVVSNVLSFVLNFLFMVL 173

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
            +FF   DG  +   L  +   L     +K+      +  +  LG  +  + +G++ G+ 
Sbjct: 174 IIFFILIDGGKLVDYLVDMSP-LPQDQDEKLVAKFKDMSGAVILGNGVCGLAQGILGGAV 232

Query: 233 YWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
           + L G+PS    GV+  I+A +P  G  + F   +I + I+G I       ++ +I  F 
Sbjct: 233 FALFGLPSPFLWGVVMGILAFLPIVGIGVVFLPAAIIMFIQGKIATGVFFIIFYSILSFS 292

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           V+  ++P LVG  +++  L  F  ++GG++  G+LG+  GP+++     +      + K
Sbjct: 293 VEYVIKPKLVGDRVQMHPLLVFLAIMGGLKIFGILGVIYGPLIVTFFLTLADIYRASYK 351


>gi|225848452|ref|YP_002728615.1| membrane protein [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644073|gb|ACN99123.1| membrane protein [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 354

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 73/334 (21%), Positives = 148/334 (44%), Gaps = 16/334 (4%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
            +  + +       F   +L +L+     +P +    SK + S    ++I+T++++   +
Sbjct: 17  FLLFLFLGYVIFSPFVGLILVSLLFVVIFYPFHLKIKSKVK-SDILSSLISTLTILTFIL 75

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +PL  + ++   E+ +L   V     +       L  +P       L+  +L     +  
Sbjct: 76  IPLSLIVFFLAKEIIDLYPLVSQYISNPNYFVEKLKSVPY------LYNLYLKVQNEIFN 129

Query: 136 LSETFLKTNGIDFIPRFASRFG-------MIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              + L    I+++  FAS F           + + + I  +I+ +FF ++DG  + + +
Sbjct: 130 NVNSNLHETFINYLKGFASTFFDIAKGFLTNLILFSIGIFILILNIFFLFKDGEKLYKLV 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S+   L       + +     +++  LG   +A+ + +       +AGV   + +  IT
Sbjct: 190 HSVIP-LDKEEKDYLFKNSYLAVQAVILGSVFVAVAQAVATLIGLLVAGVDYAIIIAFIT 248

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A IP GGA + +  V+IYL    +       FL+G   +  VD  +RP +VG  I +
Sbjct: 249 FLAAFIPFGGASLVWVPVAIYLFATKSFIAGLLFFLYGTFVISTVDNIVRPIVVGSKIDI 308

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             +  FF ++GG++  G LG+FI PV++A+I   
Sbjct: 309 HPMILFFAILGGLKAFGFLGIFIAPVIVAVIDAF 342


>gi|108801082|ref|YP_641279.1| hypothetical protein Mmcs_4118 [Mycobacterium sp. MCS]
 gi|119870223|ref|YP_940175.1| hypothetical protein Mkms_4193 [Mycobacterium sp. KMS]
 gi|108771501|gb|ABG10223.1| protein of unknown function UPF0118 [Mycobacterium sp. MCS]
 gi|119696312|gb|ABL93385.1| protein of unknown function UPF0118 [Mycobacterium sp. KMS]
          Length = 400

 Score =  151 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 56/350 (16%), Positives = 128/350 (36%), Gaps = 7/350 (2%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
                +  +  + +  +    YFL+GFF  ++ A +  +   P+Y     +    +   A
Sbjct: 13  FTTTQKRALSVVTLLAVAFGAYFLRGFFILIVVAAVGAYLFTPLYERLRRRFG--TGLSA 70

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVL--ANQHGIPVPRWLSDIPGGMWASE 121
            +  ++ +   I+P   + +  ++++ ++V+ V    A      +          +    
Sbjct: 71  TLTLLAAVLTVIIPATLVVFLAIVQITQMVTTVNQWMATTDVSTLGDRAMKFANDLIEKV 130

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            +      P +L+    T  +  G   +       G +      ++IF +        + 
Sbjct: 131 PFLDFRLTPDTLRDGVVTVSQRVGEWLLGVLQGAVGGVLGALAATVIF-LYVFISLLVNR 189

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV-PS 240
             I   +  L   L              +++ T  G  +IA+ +G+    + ++AG    
Sbjct: 190 DKIRTLIRRLNP-LGEDITDLYLAKTGAMVKGTVKGQFVIALCQGVAGAISIYVAGFHEG 248

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
                ++ + +++IP G+ I      I + + GN+     +  +  + +  +D  LRP L
Sbjct: 249 FFFFAIVLSALSVIPLGSGILSIPFGIGMALFGNVIGGVFVVAFHLLVVTNIDNVLRPML 308

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           V    +L        +  G+   G  G+ +GPVLM +I       +   K
Sbjct: 309 VPKAARLDPALMLLAVFSGIAMFGFWGIVLGPVLMIIIVTTISVYLAVYK 358


>gi|295676312|ref|YP_003604836.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1002]
 gi|295436155|gb|ADG15325.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1002]
          Length = 370

 Score =  151 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 54/342 (15%), Positives = 130/342 (38%), Gaps = 7/342 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  + +        F   +  ++I+  T +P+              +A +  +    + 
Sbjct: 24  LIAILAVFCFRIFAPFLNLMAWSVILAITLYPLQVRLRHTLGGKDGLIATLIILVAFAVI 83

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
           +VP   L       +++ ++     +    P    ++  P  G    + W +  +    L
Sbjct: 84  LVPTYALGLAVADSIEKSIAIAKSGSFQIPPPAESVASWPIVGQRVYDFWLQASTDLTGL 143

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                  LK  G+  +       G   + + +++I   I        G         +  
Sbjct: 144 AHKFAPQLKEAGLAVLATVTG-LGAGLVIFFVALIIAGI----LMAHGEKGYHSAVQIAS 198

Query: 194 HLF-PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            +  P    +I+ +    IR+   G+  IA  + L++G  + + G+P    L +   ++ 
Sbjct: 199 RISGPGNGVQIADLCTATIRAVAQGVVGIAFIQMLLIGIGFVVKGIPGAGLLALAVLLLG 258

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++   A +    V  ++++   +  A  +F        + D  L+P ++G  + +P    
Sbjct: 259 IMQLPATLITIPVIAFVIVTDGVSTANIIFAVYVFVAGLADNVLKPLMLGRGVAVPMPVV 318

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             G +GG+ T G++GLF+GPV++A+   ++   +    +  +
Sbjct: 319 LIGALGGMVTGGVIGLFVGPVMLAVGYQLFWRWVRDQPQPTQ 360


>gi|126436920|ref|YP_001072611.1| hypothetical protein Mjls_4349 [Mycobacterium sp. JLS]
 gi|126236720|gb|ABO00121.1| protein of unknown function UPF0118 [Mycobacterium sp. JLS]
          Length = 400

 Score =  151 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 57/350 (16%), Positives = 128/350 (36%), Gaps = 7/350 (2%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
                +  +  + +  +    YFL+GFF  ++ A +  +   P+Y     +    +   A
Sbjct: 13  FTTTQKRALSVVTLLAVAFGAYFLRGFFILIVVAAVGAYLFAPLYERLRRRFG--TGLSA 70

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVL--ANQHGIPVPRWLSDIPGGMWASE 121
            +  ++ M   I+P   + +  ++++ ++V+ V    A      +          +    
Sbjct: 71  TLTLLAAMLTVIIPATLVVFLAIVQITQMVTTVNQWMATTDVSTLGDRAMTFANDLIEKV 130

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            +      P +L+    T  +  G   +       G +      ++IF +        + 
Sbjct: 131 PFLDFRLTPDTLRDGVVTVSQRVGEWLLGVLQGAVGGVLGALAATVIF-LYVFISLLVNR 189

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV-PS 240
             I   +  L   L              +++ T  G  +IA+ +G+    + ++AG    
Sbjct: 190 DKIRTLIRRLNP-LGEDITDLYLAKTGAMVKGTVKGQFVIALCQGVAGAISIYVAGFHDG 248

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
                ++ + +++IP G+ I      I + + GN+     +  +  + +  +D  LRP L
Sbjct: 249 FFFFAIVLSALSVIPLGSGILSIPFGIGMALFGNVIGGVFVVAFHLLVVTNIDNVLRPML 308

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           V    +L        +  G+   G  G+ +GPVLM +I       +   K
Sbjct: 309 VPKAARLDPALMLLAVFSGIAMFGFWGIVLGPVLMIIIVTTISVYLAVYK 358


>gi|167753079|ref|ZP_02425206.1| hypothetical protein ALIPUT_01349 [Alistipes putredinis DSM 17216]
 gi|167659393|gb|EDS03523.1| hypothetical protein ALIPUT_01349 [Alistipes putredinis DSM 17216]
          Length = 361

 Score =  151 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 63/329 (19%), Positives = 131/329 (39%), Gaps = 20/329 (6%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +++ +  V    L  F   +L AL I         +   + +   +  A +     +  
Sbjct: 21  VILLGLGTVIFVELIPFLGGLLGALTIYVLLRGQMRALTIRHKLRRSLAASLLIGEAIVC 80

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           F++PL  L +  + +++++        Q    +   +          E    +L    ++
Sbjct: 81  FLIPLSLLVWLLVAKLQDVTLDPSTVIQPIRNLAELI---------RERIGYNLLDGDNI 131

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
             L E          +PR           + ++++ ++  L+F    G  +   L     
Sbjct: 132 AKLVE---------LLPRAGQWVLQSIGSFAVNVVVLLFVLYFMLIGGREMESYLRKFIP 182

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  ++ +R V  ++RS  +G+ ++A+ +G V    YWL GVP  +  GV+T +  +
Sbjct: 183 -FNRTVTQEFTREVVMIVRSNAIGIPLLAVIQGAVALVGYWLCGVPWALFWGVVTCVATI 241

Query: 254 IPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +P  G  + +  ++ YL + G+   A  L  +G + +  VD   R  L         L T
Sbjct: 242 VPLLGTALVWLPLAAYLGLIGHWGAAVGLLAYGVVVITQVDNLARFVLQKRMADTHPLVT 301

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            FG++ G+   G +G+  GPVL+++    
Sbjct: 302 IFGVIIGLSLFGFMGVIFGPVLLSIFIFC 330


>gi|220915912|ref|YP_002491216.1| protein of unknown function UPF0118 [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219953766|gb|ACL64150.1| protein of unknown function UPF0118 [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 380

 Score =  151 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 69/326 (21%), Positives = 130/326 (39%), Gaps = 7/326 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + +K F+     A ++            ++        A + T  V+   +VP+  L   
Sbjct: 28  WMVKPFWVAFFLAAVLTAALRRWMEWLSARLRGRRALAAGLLTAGVLLAGVVPVAALGAV 87

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + E  + +  +  A Q    V   +S +PG     EL  + ++     +   +      
Sbjct: 88  LIREAVDGIQWLRSALQSEG-VWGLVSRLPG--PIEELAHRAVTALGDPERQLQQLAGQG 144

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
           G                 + L  + M+IALFFF  DG  +   +D+    L    ++ + 
Sbjct: 145 GQAAAAVGGVLAATGT--FVLQTVLMLIALFFFLVDGQRLIAWVDARVP-LRAGQFRTLV 201

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
               +   S        A  + +   + Y +A  P+ + L V+T ++A+IP  GA     
Sbjct: 202 EDFRRTTLSVVAATAATAGIQTVTALAGYLIARAPNPIFLAVLTLVVALIPAVGATAMVL 261

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
           AV+   L  G+  +   L +WGA  + +VD   RP+L+ G + L     FF L+GG+   
Sbjct: 262 AVAALQLATGHTVSGIFLAIWGAAVVSLVDNVARPYLLKGGMALHGGVVFFALLGGLAAF 321

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAI 349
           G +GL +GP+++  +  +       +
Sbjct: 322 GGIGLILGPLVVTFLVTVLNMYRREL 347


>gi|188996846|ref|YP_001931097.1| protein of unknown function UPF0118 [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931913|gb|ACD66543.1| protein of unknown function UPF0118 [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 355

 Score =  151 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 71/328 (21%), Positives = 142/328 (43%), Gaps = 4/328 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
            +  + +       F   +  ++++    +PI+    SK  ++S   ++I+T  ++   +
Sbjct: 17  FLLFLFLGYVIFSPFIGIITVSILLVVIFYPIHQKI-SKIVKNSVLNSLISTFIILTTLL 75

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS-ELWTKHLSHPQSLK 134
           +P   + ++   E+ EL   +     +   +   L + P       +L   +L+   S  
Sbjct: 76  LPFSLILFFLTKEIIELYPLIADYITNPNLIVEKLKESPYLYKLYLKLQEFYLNKLDSNF 135

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
             S           +  FA  F    +   ++I  M I +FF ++DG+ +   + S+   
Sbjct: 136 HDSIINYLKQFTAVMFNFAKTFLSNVILIFIAIFIMAITIFFLFKDGYKLYNLVYSIIP- 194

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L       +       +++  LG   +AI + +     + +A V   + L  +T   A I
Sbjct: 195 LEKEEKDYLFSNSYAAVQAVILGSVFVAIAQAIASLIGFLVADVEYSLVLTFLTFFAAFI 254

Query: 255 P-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P GGA + +  V+IYL++   +       ++G   +  VD  +RP +VG  I +  +  F
Sbjct: 255 PFGGASLVWVPVAIYLMVSKGLLVGILFAVYGTFVISTVDNIIRPIVVGTKIDMHPMIMF 314

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           F ++GG+ T G LG+FI PV++ALI   
Sbjct: 315 FAIIGGLSTFGFLGIFIAPVIVALIDAF 342


>gi|324497297|gb|ADY39451.1| putative inner membrane protein [bacterium enrichment culture clone
           P43-9H:P46-4G]
          Length = 261

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 96/246 (39%), Gaps = 6/246 (2%)

Query: 108 RWLSDIPG-GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLS 166
            WL+ IP  G      W   L    S  +            +    A+  G   +   L 
Sbjct: 1   AWLNSIPVVGSKLYSGWHSLLEMGGSALMAKIRPYIGTTTTWFVGQAAHIGRFMMHCTLM 60

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
           ++F  +     Y  G  ++  +      L          +  + +R+  LG+ + A+ + 
Sbjct: 61  LLFSAL----LYWRGEQVALGVRHFATRLAGKRGDAAVLLAAQAVRAVALGVVVTALVQA 116

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           ++ G    ++GVP      V+  +  +   G  +      I+L   G+    T L +W  
Sbjct: 117 VLGGIGLAISGVPYATVFTVVMLMTCLAQLGPLLVLVPSIIWLYWTGDTTWGTVLLVWSC 176

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
             +  +D  +RP L+     LP +    G++GG+   G++GLFIGPVL+A+   ++   +
Sbjct: 177 -VVGTMDNVIRPILIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWV 235

Query: 347 MAIKEN 352
             I   
Sbjct: 236 HEIPPP 241


>gi|224370719|ref|YP_002604883.1| putative permease [Desulfobacterium autotrophicum HRM2]
 gi|223693436|gb|ACN16719.1| putative permease [Desulfobacterium autotrophicum HRM2]
          Length = 386

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 62/335 (18%), Positives = 135/335 (40%), Gaps = 8/335 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           I++  + L  FFA ++  L++     P+      +        ++I  + +  + +VP+L
Sbjct: 38  IILVCWLLSPFFATIVMGLVVMGAFAPLNRLLQRRL--KPGLASMITCLVIFFVVLVPVL 95

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK---HLSHPQSLKIL 136
           F       E  +L      A   G  V + L +       + L       LS      + 
Sbjct: 96  FFVGVLSKEAYDLYQMAKSAV-LGNQVKQVLENTHVLERVNHLLATMGFDLSFSWEEMVK 154

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
             + L      ++ + AS               M+I +F+ + DG      +  +   L 
Sbjct: 155 PVSELGRVVGLYLFQQASFVASNVFKIIFYFCLMLIVVFYLFIDGARFVDYIYDISP-LA 213

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
             + +K+     ++  +  +G  +  + +G+V G A+++ G+ S    GVI   +A +P 
Sbjct: 214 DEHNEKLFCKFKEMAGAVLVGNGLGGLIQGVVGGGAFFMLGLASPFLWGVIMGFLAFLPI 273

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G  +      + L++K  +     + +  A+  + ++   +P +VG  +K+  L  FF 
Sbjct: 274 LGIGVVLIPTGLILMLKERMAAGIFILVLYAVLSWGIEYVFKPKVVGDRVKMHPLVVFFS 333

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++GG+   G+LG+  GP+++ L   +        +
Sbjct: 334 IIGGLEIYGILGIIYGPLIITLFLTLADIYFANFQ 368


>gi|296169971|ref|ZP_06851578.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295895375|gb|EFG75081.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 381

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 66/351 (18%), Positives = 135/351 (38%), Gaps = 7/351 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E  LN +  +  +    +L + YFL+G+F  ++ A +  +   P+++ F  +    +   
Sbjct: 4   EFTLNQKRALAILTAIALLFAAYFLRGYFVLIVVAAVGAYLFTPLFNWFGRRLG--TGLA 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA--NQHGIPVPRWLSDIPGGMWAS 120
           A    +  + + IVP+  L    ++++  +V  +     +     +          + + 
Sbjct: 62  ATCTLLCALVIVIVPVTLLVILAIVQISRMVDSITEWVKSTDLSGLGDRTLHAVNELLSR 121

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             +        +L+    T  +  G   +       G +      +IIF+ +  F     
Sbjct: 122 VPFAHMTITTDNLRKAMVTVGRNVGEWALHFLQGAVGGLAGAITSAIIFLYV--FVALLV 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                ++L +    L              ++R T  G  +IA+ +G+   ++ ++AG   
Sbjct: 180 HRERVRKLIADLNPLGDEVTDLYLAKAGAMVRGTVNGQFVIALCQGVAGAASIYVAGFHH 239

Query: 241 HVA-LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
                 V+   +++IP G  I      I ++  GNI     + LW  + +  +D  LRP 
Sbjct: 240 GFFIFAVLLTALSIIPLGGGIVTIPFGIGMIFYGNIAGGAFVVLWHLVVVTNIDNFLRPI 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           LV    +L        +  G+   G  G+ IGPVLM LI    +  ++  K
Sbjct: 300 LVPRDARLNPALMLLSVFSGIAMFGPWGIVIGPVLMILIVTTVEVYLVVFK 350


>gi|58039782|ref|YP_191746.1| putative permease [Gluconobacter oxydans 621H]
 gi|58002196|gb|AAW61090.1| Putative permease [Gluconobacter oxydans 621H]
          Length = 365

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 73/355 (20%), Positives = 149/355 (41%), Gaps = 7/355 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
                ++  +   I++ +++ LK F    + A+ I  T+WP+     +    S      +
Sbjct: 12  NTRSVLIALLASGIVISAIWILKPFLPATIWAVTIAVTTWPMLRRLQTFVGNSRRVAVSL 71

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV-PRWLSDIP-GGMWASELW 123
             +  M +FI+PL            ++++ V  ++   IP  P W+  +P  G   +  W
Sbjct: 72  TILIAMLVFILPLWLAITTVSSHFGDIIALVSSSSTLHIPDEPPWMGRLPLVGPHIAPFW 131

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +         +          I     +A  F ++ L + L+++ + +          S
Sbjct: 132 DRMQHMQFPEMVRQVIPAPETLIHTFLAYAGSFSILALQFILTLVILGV----LLMRAES 187

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                D+L   L     K++ ++    IR    G+T+ A+ E  V G    LAG P    
Sbjct: 188 AIAVADTLVTILAGNRGKEMLQLAAYTIRGVAFGVTVTAVVESAVAGIGLKLAGAPWVSI 247

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           L  +T ++ ++  G  ++     I++     +  A  L +   I   I+D  LRPFL+  
Sbjct: 248 LTAVTFMVCLLQAGPGVTLIPAVIWVYFDRGLAPAALLLV-VTIITIIIDNVLRPFLIRK 306

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
              +P +    G++GG+  +GL+G+FIGP+++++   + K  I   ++    +S+
Sbjct: 307 QADIPLILIMLGVIGGLGGLGLVGIFIGPLILSVAYTLTKSWISDSRQTPPSVST 361


>gi|33593185|ref|NP_880829.1| hypothetical protein BP2180 [Bordetella pertussis Tohama I]
 gi|33563560|emb|CAE42458.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
          Length = 361

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 59/337 (17%), Positives = 138/337 (40%), Gaps = 8/337 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I  + +      + F   +L ++I+  T  P++              AV+ T++ M +
Sbjct: 26  TLIGGLTVWCYRVAEPFIGMLLWSIILAVTLAPLHMRLTRLLGARPRLAAVVLTLATMLV 85

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
            +VP   L       +  +              P ++ ++P  G+   E+W + +++ Q 
Sbjct: 86  LLVPGAMLTASLGDSLVNIFHHSTGRIVRIPAPPDFVIELPLIGVRLHEIWLQAMTNLQD 145

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           +    +  L T G   +   AS  G+    +  SI    + L +         +   ++G
Sbjct: 146 VLKPLQPHLATAGRWLLAGMASA-GLGIAVFLASIAIAGVILVY----ADPAKRAAHAIG 200

Query: 193 EHLF-PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
             +  P     ++++    IR+   G+  +A+ + ++ G  + LAGVP+     ++  ++
Sbjct: 201 VRIAGPEQGVALAQLTAATIRAVAQGVIGVALIQAVLAGLGFLLAGVPAAGLWAIVALLI 260

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            ++     +    + +Y+ +      A    +W  + + + D  L+P ++   + +P   
Sbjct: 261 CIVQLPLFLLMVPMVVYVFLNNTPTVAIVFAVWC-LLVSLCDNVLKPLMLARGVDIPIPV 319

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
              G +GGV   G++GLF+G V   L  V++ + +  
Sbjct: 320 ILIGALGGVLAAGIVGLFLGSVGFGLGYVLFMQWVRQ 356


>gi|218263328|ref|ZP_03477475.1| hypothetical protein PRABACTJOHN_03160 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222806|gb|EEC95456.1| hypothetical protein PRABACTJOHN_03160 [Parabacteroides johnsonii
           DSM 18315]
          Length = 341

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 60/340 (17%), Positives = 137/340 (40%), Gaps = 20/340 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I+ + ++       F   +L A  I             KK    +F+A+I  +  +  
Sbjct: 19  TIIIVLGMILFVEFIPFLGGILGACTIYILVRKQMLYLTEKKHLRRSFVAIILLLETILC 78

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           F++PL    +  + +++                       P  +  S     +L   ++ 
Sbjct: 79  FLIPLSLAVWLLINKLQNFNLD------------------PTQLVKSAEHIANLIEQRTG 120

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
             + +T    + +  +P+           + +++  +++ L+F    G  + + + S+  
Sbjct: 121 YDVLDTSNIMSAVSILPKIGQVLMGGISGFAINVAVLVLILYFMLIGGAKMEKYVYSILP 180

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  K +   +  ++ S  +G+ ++AI +GL+    YW+  VPS    G +T    +
Sbjct: 181 -FSDENKKNVLNEINMIVTSNAIGIPLLAIIQGLIALLGYWIFDVPSPFLFGFLTCFATI 239

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP  G  + +  +++Y+++ G+  NA  L  +  I +  VD  +R  L         L T
Sbjct: 240 IPVVGTALVWLPLALYMVLTGDWVNAAGLTAYALIIITNVDNLIRFILQKKMADTHPLIT 299

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            FG++ G+   G +G+  GP+L+++  + +        +N
Sbjct: 300 IFGVIIGLSLFGFMGIIFGPLLISIFILCFNIFKEKYLDN 339


>gi|154491658|ref|ZP_02031284.1| hypothetical protein PARMER_01269 [Parabacteroides merdae ATCC
           43184]
 gi|154087899|gb|EDN86944.1| hypothetical protein PARMER_01269 [Parabacteroides merdae ATCC
           43184]
          Length = 341

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 61/340 (17%), Positives = 135/340 (39%), Gaps = 20/340 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I+ +  +       F   +L A  I             KK    +F+AVI  +  +  
Sbjct: 19  TIIVVLGTILFVEFIPFLGGILGACTIYILVRKQMLYLTEKKHLRRSFVAVILLLETILC 78

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           F++PL    +  + +++                       P  +  S     +L   ++ 
Sbjct: 79  FLIPLSLAVWLFINKLQNFNLD------------------PTQLVKSAEHIANLIEQRTG 120

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
             + +T    + +  +P+           + +++  +++ L+F    G  + + + S+  
Sbjct: 121 YDVLDTSNIMSAVSILPKIGQVLMGGISGFAINVAVLVLILYFMLIGGAKMEKYVYSILP 180

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  K +   +  ++ S  +G+ ++AI +GL+    YW+  VPS    G +T    +
Sbjct: 181 -FSDENKKNVLNEINMIVTSNAIGIPLLAIIQGLIALLGYWIFDVPSPFLFGFLTCFATI 239

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP  G  + +  +++Y+ + G+  NA  L  +  I +  VD  +R  L         L T
Sbjct: 240 IPVVGTALVWLPLALYMTLTGDWVNAAGLTAYALIIITNVDNLIRFILQKKMADTHPLIT 299

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            FG++ G+   G +G+  GP+L+++  + +        +N
Sbjct: 300 IFGVIIGLSLFGFMGIIFGPLLISIFILCFNIFKEKYLDN 339


>gi|153832787|ref|ZP_01985454.1| hipothetical membrane protein [Vibrio harveyi HY01]
 gi|148870921|gb|EDL69811.1| hipothetical membrane protein [Vibrio harveyi HY01]
          Length = 373

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 60/340 (17%), Positives = 126/340 (37%), Gaps = 5/340 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           +  +I      L  F   V+   II    +P+  +  ++   S    + + +   + L +
Sbjct: 21  VALLIWWCFSILSPFIMLVVWGGIIAIALYPVMMTLHNRLGISKGKASALLSTIGVLLLL 80

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           VPL+ L         E+V+ +             L +IP      +L+        +++ 
Sbjct: 81  VPLIALSSGLYTSGTEVVTGLQDGTLVVPKPQESLKEIPV--VGDKLFVAINYASTNMEG 138

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
               +       F+ + AS  G +   + +  I   +    F  +     +    L + L
Sbjct: 139 FLVKY-GEQVKGFLSQAASIVGSVSGGF-IQFIISTMIAGAFMSNAEVCQKGFTKLADRL 196

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                + +  +    +RS   G+  +A+ + ++ G      GVP+     V   ++A++ 
Sbjct: 197 TNKKGEALIDLSKSTVRSVVQGVIGVALIQSVMAGVGMVAVGVPAAALWMVAVILIAIVQ 256

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
               ++     IY+    +   A    +W  I +   D  L+P L+      P L T  G
Sbjct: 257 LPPILALIPAIIYVFSVESTLVAGIFLVWC-ILVSASDAVLKPVLLSRGSDTPMLVTLLG 315

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            +GG+   G++GLF+G V+++L   +    +        K
Sbjct: 316 ALGGMAMSGIVGLFVGAVVLSLTYQLMVNWLDEDDAEANK 355


>gi|257458847|ref|ZP_05623970.1| acid membrane antigen A [Campylobacter gracilis RM3268]
 gi|257443835|gb|EEV18955.1| acid membrane antigen A [Campylobacter gracilis RM3268]
          Length = 467

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 52/351 (14%), Positives = 123/351 (35%), Gaps = 25/351 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              +       + +    +Y    F   ++  +++   +  +++          T  +V+
Sbjct: 122 KTNKIFFIGATLLMFCCVIYLFSPFLMVIVIGVLMAVATSGLHAKVTKLCRGRRTLASVL 181

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-MWASELWT 124
           +   +  LF VP ++               +   N     V      +PG     +  + 
Sbjct: 182 SLFLLCALFFVPFIYAVIEIAKNAASF--DMARLNDALSYVQSLDIRLPGPFEKFNTQFR 239

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L++     +  +          I  + S  G     + + ++ +I+  FF Y  G S 
Sbjct: 240 SFLANLDVAGVAKQ----------IISYLSVVGKSSAKFIVDMVLIIVFCFFAYLYGESF 289

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +    +   + PA    I       +   F      A+ +G +      + G    + +
Sbjct: 290 KRFFKKILP-VEPAQIDYIFSETANTMSVVFYSTIFNAVLQGFLFSIIAGIFGFD-ALLM 347

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLVG 302
           GV+ A  ++IP  G  + +   ++Y+L  G+   A  +  +  I +  + D  ++P ++ 
Sbjct: 348 GVLFAFCSLIPAVGGALIYVPTALYVLAGGSTSGAIVIMAYCVILISTLADSFVKPLVIK 407

Query: 303 --------GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
                    P  +  +  FF ++ G+ T G  G+ +GP ++ L   +    
Sbjct: 408 FINSRLVENPANINEMLIFFSMLSGISTFGFWGVILGPAILTLFIAVLNLY 458


>gi|33602293|ref|NP_889853.1| hypothetical protein BB3318 [Bordetella bronchiseptica RB50]
 gi|33576732|emb|CAE33810.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 360

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 59/337 (17%), Positives = 138/337 (40%), Gaps = 8/337 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I  + +      + F   +L ++I+  T  P++              AV+ T++ M +
Sbjct: 25  TLIGGLTVWCYRVAEPFIGMLLWSIILAVTLAPLHMRLTRLLGARPRLAAVVLTLATMLV 84

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
            +VP   L       +  +              P ++ ++P  G+   E+W + +++ Q 
Sbjct: 85  LLVPGAMLTASLGDSLVNIFHHSTGRIVRIPAPPDFVIELPLIGVRLHEIWLQAMTNLQD 144

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           +    +  L T G   +   AS  G+    +  SI    + L +         +   ++G
Sbjct: 145 VLKPLQPHLATAGRWLLAGMASA-GLGIAVFLASIAIAGVILVY----ADPAKRAAHAIG 199

Query: 193 EHLF-PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
             +  P     ++++    IR+   G+  +A+ + ++ G  + LAGVP+     ++  ++
Sbjct: 200 VRIAGPEQGVALAQLTAATIRAVAQGVIGVALIQAVLAGLGFLLAGVPAAGLWAIVALLI 259

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            ++     +    + +Y+ +      A    +W  + + + D  L+P ++   + +P   
Sbjct: 260 CIVQLPLFLLMVPMVVYVFLNNTPTVAAVFAVWC-LLVSLCDNVLKPLMLARGVDIPIPV 318

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
              G +GGV   G++GLF+G V   L  V++ + +  
Sbjct: 319 ILIGALGGVLAAGIVGLFLGSVGFGLGYVLFMQWVRQ 355


>gi|224538267|ref|ZP_03678806.1| hypothetical protein BACCELL_03158 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520127|gb|EEF89232.1| hypothetical protein BACCELL_03158 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 348

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 61/333 (18%), Positives = 129/333 (38%), Gaps = 28/333 (8%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +  F   +L AL I             K++   +  A + T   +  F+VPL    +  +
Sbjct: 37  ITPFLGGLLGALTIYILVRRQMIHLTDKRKMKRSVAATLITTEAILFFLVPLALAVWLLV 96

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
                 +  + L  Q  I      ++I                    +      L  +  
Sbjct: 97  ----SKLQDINLDPQSIIAPIESAANI------------------IKEKTGYDVLGKDTT 134

Query: 147 DFIPRFASRFGMIFL----DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            FI       G   +     + +++  ++  L+F    G  + + +  +      A  + 
Sbjct: 135 SFIISALPAIGQFVMGSISSFAVNLFVLVFVLYFMLIGGQRMEKYISEILP-FSEANTEH 193

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
           +   +  ++ S  +G+ ++AI +G V    YW   VP  +  G +T +  +IP  G  + 
Sbjct: 194 VVHDIKMIVHSNAVGIPLLAIIQGGVAMIGYWFFDVPDILLTGFLTCLATVIPMVGTALV 253

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +  +++Y+ + G++FN   L ++G + +  +D  +R  L      +  L T FG+V G+ 
Sbjct: 254 WFPIAVYMALSGDLFNGIGLAIFGTLIISQLDNLIRFILQKKMADIHPLITIFGVVIGLS 313

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             G +G+  GP+L++L  +          + K+
Sbjct: 314 LFGFMGVIFGPLLLSLFFLFVDMFKREYLDGKK 346


>gi|224026079|ref|ZP_03644445.1| hypothetical protein BACCOPRO_02832 [Bacteroides coprophilus DSM
           18228]
 gi|224019315|gb|EEF77313.1| hypothetical protein BACCOPRO_02832 [Bacteroides coprophilus DSM
           18228]
          Length = 334

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 60/329 (18%), Positives = 129/329 (39%), Gaps = 20/329 (6%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I+ + L+    L  F   +L A  I             K+       AV+  +  +  
Sbjct: 15  AIILVLGLILFLKLTPFMGGLLGACTIYIMLRKQMFYLTHKRHFGKGISAVLLLLETILC 74

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           F+VPL  + +  + +++ +             +  W+                    Q+ 
Sbjct: 75  FLVPLSLVAWLLIHKLQTVNVDTQAFIHTITQLTDWVRT------------------QTS 116

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
             L +    ++    +P            + ++I  +II L+F    G  + Q +  +  
Sbjct: 117 YDLFDQKNISSVASILPSIGQFLMGGISSFTVNIGVLIIVLYFMLIGGKRMEQYIYEILP 176

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  K++   +  ++RS  +G+ ++A+ +G++    Y+L   PS +  G +T    +
Sbjct: 177 -FNEENKKEVLTEIHLLVRSNAIGIPLLAVIQGMIASLGYYLFDAPSVLLFGFLTCFATI 235

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP  G  + +  ++ Y+ I G+  +A  L L+  + +  +D  +R  L         L T
Sbjct: 236 IPIVGTALVWIPLAAYMAISGDWPHALGLVLYCGLIVTNIDNLIRFILQKKLADTHPLIT 295

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            FG+  G+   G +G+  GP+L+++  V 
Sbjct: 296 IFGVFIGLPLFGFMGIIFGPLLLSVFLVC 324


>gi|166369036|ref|YP_001661309.1| hypothetical protein MAE_62950 [Microcystis aeruginosa NIES-843]
 gi|166091409|dbj|BAG06117.1| hypothetical protein MAE_62950 [Microcystis aeruginosa NIES-843]
          Length = 358

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 66/335 (19%), Positives = 133/335 (39%), Gaps = 7/335 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L+ F   +L   I+    +P++          +    V+ T+  + + I P+  +    
Sbjct: 27  LLRPFLTMILWGAILAIAWYPLFLWLKKLLAGRAKLATVLLTLLCLGIIIGPVSGIAAVL 86

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLKTN 144
              ++ +   +        P P  ++  P  G   + LW +   +        E  LK  
Sbjct: 87  AGNLRTMAEYIDTGAVLIPPPPADVATWPLIGERIAGLWQQASDNTGQFLQRFEPQLKEL 146

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
           G   +   A+  G+  L +  SI+              ++++ ++ L E + P     ++
Sbjct: 147 GKISL-SLATSTGLTVLKFIASILIAAALTL----SAKNLTRPMNRLAEKIAPGRGIALA 201

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            +    +R+   G+  +AI + L++G      G P+   L ++T I+ ++  G  +    
Sbjct: 202 GLTASTVRNVSRGIIGVAIIQSLLIGIGLVTVGTPAAGLLTLLTLILGILQIGPGLIVLG 261

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             I+  +      A    LW  I   +VD  L+P L+G  + +P +    G+ GGV   G
Sbjct: 262 ALIHAWVTLPNSIALLFTLW-MIPATLVDNFLKPILMGRGLPIPMVVILLGVFGGVIAYG 320

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           ++GLF+GPVL+ L   + +  I          S +
Sbjct: 321 IIGLFVGPVLLGLCYELVRAWIGEDSPEPVANSHD 355


>gi|33596416|ref|NP_884059.1| hypothetical protein BPP1789 [Bordetella parapertussis 12822]
 gi|33566185|emb|CAE37091.1| conserved hypothetical protein [Bordetella parapertussis]
          Length = 361

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 59/337 (17%), Positives = 138/337 (40%), Gaps = 8/337 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I  + +      + F   +L ++I+  T  P++              AV+ T++ M +
Sbjct: 26  TLIGGLTVWCYRVAEPFIGMLLWSIILAVTLAPLHMRLTRLLGARPRLAAVVLTLATMLV 85

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
            +VP   L       +  +              P ++ ++P  G+   E+W + +++ Q 
Sbjct: 86  LLVPGAMLTASLGDSLVNIFHHSTGRIVRIPAPPDFVIELPLIGVRLHEIWLQAMTNLQD 145

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           +    +  L T G   +   AS  G+    +  SI    + L +         +   ++G
Sbjct: 146 VLKPLQPHLATAGRWLLAGMASA-GLGIAVFLASIAIAGVILVY----ADPAKRAAHAIG 200

Query: 193 EHLF-PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
             +  P     ++++    IR+   G+  +A+ + ++ G  + LAGVP+     ++  ++
Sbjct: 201 VRIAGPEQGVALAQLTAATIRAVAQGVIGVALIQAVLAGLGFLLAGVPAAGLWAIVALLI 260

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            ++     +    + +Y+ +      A    +W  + + + D  L+P ++   + +P   
Sbjct: 261 CIVQLPLFLLMVPMVVYVFLNNTPTVAAVFAVWC-LLVSLCDNVLKPLMLARGVDIPIPV 319

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
              G +GGV   G++GLF+G V   L  V++ + +  
Sbjct: 320 ILIGALGGVLAAGIVGLFLGSVGFGLGYVLFMQWVRQ 356


>gi|257095745|ref|YP_003169386.1| hypothetical protein CAP2UW1_4216 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048269|gb|ACV37457.1| protein of unknown function UPF0118 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 361

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 84/355 (23%), Positives = 157/355 (44%), Gaps = 9/355 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q I   ++  +++  +  L  F   +L A++I  T+ PI +  +      S   A++ +
Sbjct: 6   KQLIQIALVALLLIGCIAVLLPFTGTLLFAIVICVTTLPIRNRLLRLCRGRSNLAALLVS 65

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP--VPRWLSDIP-GGMWASELWT 124
           + ++ L + P+  L       ++  +  +    +HG+P   P WL  +P  G   +  W 
Sbjct: 66  ILLLLLLVAPMALLSGSLADGVEIAIRYLKPLMEHGLPATPPAWLISMPIVGTDIASYWH 125

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           + +   + +  L   FL         + A     +F    L ++ +I  +FF +RD    
Sbjct: 126 ELIESREEMNNLLRQFLDPT-----RKLALAAVALFAQGLLQLVLVIFFVFFIFRDAHIY 180

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + L +    L     +++  +V   +     G+   A  + +V    + +AGVP  V L
Sbjct: 181 VEALHTGSRMLAGDLGERMLALVEGTVTGVMAGIVGTAAAQAVVGMVGFIIAGVPGIVIL 240

Query: 245 GVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            V T   +M+P  GA + +   +++L  +G    A  + LWG   +  VD  L+P L+  
Sbjct: 241 TVATFFFSMVPVVGATLIWLGAAVWLYNEGQAGWAVFMVLWGMFGISSVDNFLKPVLISR 300

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
              LP L    G+ GGV   G +GLF+GP L+AL  V+ +E +     + E+ +S
Sbjct: 301 TASLPLLLIVVGVFGGVLVFGFIGLFLGPTLLALGQVLIREWLAHAGPDVERPAS 355


>gi|167031767|ref|YP_001666998.1| hypothetical protein PputGB1_0752 [Pseudomonas putida GB-1]
 gi|166858255|gb|ABY96662.1| protein of unknown function UPF0118 [Pseudomonas putida GB-1]
          Length = 365

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 138/344 (40%), Gaps = 7/344 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L    I   ++  +++ S    + F   +L A+I+  T +P++     +      + A +
Sbjct: 15  LLDVLIKAGLVAALVIFSFQVFQPFLELMLWAVILAVTLYPLHCRIQRRTGLKQGYAATL 74

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWT 124
             + V+ + +VP+  +       +  LV+ +          P  ++  P  G     LW 
Sbjct: 75  VVLLVLVVLLVPIYLVVMSIGESVDSLVTLLKSGAWSVPVPPDSVASWPLIGPKVHALWL 134

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
               +  S+       +K  G+  +   AS  G   L +  +II   + + F    G   
Sbjct: 135 AASENMASVLNQWMPQIKGAGLTVLGAAASAGGAFLL-FIGAIIISGVIMAF----GERG 189

Query: 185 SQQLDSLGEHLFPA-YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 +   +      K ++ +    IR+   G+  IA  + L++G  + + GVP    
Sbjct: 190 EVAAQRIAMRVSGEERGKPLATLCTATIRAVAQGVIGIAFIQMLLIGVGFVIKGVPGAGM 249

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           L ++  ++ +    A +    V IY+        A  +F        + D  L+P L+G 
Sbjct: 250 LAIVILMLGIAQAPATLVTVPVIIYVFNTDGFTVAAIVFAVYTFVAGLADNVLKPMLLGR 309

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            + +P      G +GG+   G++GLFIGPV++ +  V++ + + 
Sbjct: 310 GVDVPMPVVLIGALGGMVVKGIIGLFIGPVILGVTYVLFWQWVA 353


>gi|329957164|ref|ZP_08297731.1| hypothetical protein HMPREF9445_02607 [Bacteroides clarus YIT
           12056]
 gi|328523432|gb|EGF50531.1| hypothetical protein HMPREF9445_02607 [Bacteroides clarus YIT
           12056]
          Length = 336

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 59/311 (18%), Positives = 125/311 (40%), Gaps = 28/311 (9%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +  F   +L AL I             K++   +  A I T   +  F+VPL  + +  +
Sbjct: 27  ITPFLGGLLGALTIYILVRRQMIYLSEKRKMKRSIAATIITAEAILCFLVPLALVVWLAV 86

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
           + ++ +                           + +     +            L  + +
Sbjct: 87  INLQNI----------------------NLDPQAIIAPFEEAAAVIKAKTGYNVLGGDSL 124

Query: 147 DFIPRFASRFGMIFL----DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            FI     R G   +     + +++  ++  L+F    G  + + ++ L      A  + 
Sbjct: 125 SFIISSLPRIGQTLMGGISSFAVNMFVLVFVLYFMLMGGKKMERYVNELLP-FNEANTQD 183

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
           +   +  ++RS  +G+ ++AI +G V    YW+ G P+ +  G +T   +++P  G  + 
Sbjct: 184 VVHEINMIVRSNAIGIPLLAIIQGGVAMIGYWIFGAPNILFSGFLTGFASVVPMVGTALI 243

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +  ++IY+ + GN F A  L ++GA+ +  +D  +R  +      +  L T FG+V G+ 
Sbjct: 244 WVPIAIYMALIGNWFQAIGLAIFGALVISQLDNLIRFIIQKKMADIHPLITIFGVVIGLS 303

Query: 322 TMGLLGLFIGP 332
             G +G+  GP
Sbjct: 304 LFGFMGVIFGP 314


>gi|53712882|ref|YP_098874.1| hypothetical protein BF1591 [Bacteroides fragilis YCH46]
 gi|52215747|dbj|BAD48340.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
          Length = 332

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 64/333 (19%), Positives = 134/333 (40%), Gaps = 30/333 (9%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +  F   +L AL I        +   ++     +F A++ T   +  F+VP+  + +  +
Sbjct: 25  ITPFLGGLLGALTIYILVRKQMTYLGARM--KRSFAALLITGEAILCFLVPISLIVWMLV 82

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
                 +  + L  Q  I     L+ I       +                   L ++ +
Sbjct: 83  ----NKLQDINLDPQAIITPVEELAGIIKAKTGYD------------------VLGSDTL 120

Query: 147 DFIPRFASRFGMIFL----DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            FI     + G   +     + +++  ++  L+F    G  +   +D +         ++
Sbjct: 121 PFIVSLLPKIGQAVMGGISSFAVNLFVLVFVLYFMLIGGTKMEAYIDDILP-FNEKNTRE 179

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
           ++  +  ++RS  +G+ ++A+ +G V    Y++ G P+   +GV+T    +IP  G  + 
Sbjct: 180 VTHEINMIVRSNAIGIPLLAVIQGGVALIGYFIFGAPNAWLIGVLTCFATIIPMVGTALV 239

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +  V+ YL + G   NA  L  +G I +   D  +R  L         L T FG+V G+ 
Sbjct: 240 WFPVAAYLALTGEWANAIGLAAYGGIVVSQCDNLIRFILQKKMADTHPLITIFGVVIGLS 299

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             G +G+  GP++++L  +          +NK+
Sbjct: 300 LFGFMGVIFGPLVLSLFLLFVDMFKKEYLDNKK 332


>gi|189468029|ref|ZP_03016814.1| hypothetical protein BACINT_04423 [Bacteroides intestinalis DSM
           17393]
 gi|189436293|gb|EDV05278.1| hypothetical protein BACINT_04423 [Bacteroides intestinalis DSM
           17393]
          Length = 346

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 57/311 (18%), Positives = 122/311 (39%), Gaps = 28/311 (9%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +  F   +L AL I             K+    +  A + T   +  F+VPL    +  +
Sbjct: 37  ITPFLGGLLGALTIYILVRKQMIHLTDKRNMKRSIAATLITTEAILFFLVPLALAVWLLV 96

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            +++++           +     ++ I       +  T +              L  +  
Sbjct: 97  SKLQDI----------NLDPESIIAPIEDMANIIKDRTGYD------------VLGKDTT 134

Query: 147 DFIPRFASRFGMIFL----DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            FI       G   +     + +++  ++  L+F    G  + Q +  +      +    
Sbjct: 135 SFIISALPAIGQFVMGSISSFAVNLFVLVFVLYFMLIGGQKMEQYISDILP-FNKSNTDH 193

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
           + R +  ++ S  +G+ ++AI +G V    YW   VP  +  G +T +  +IP  G  + 
Sbjct: 194 VVREIKMIVHSNAVGIPLLAIIQGGVAMIGYWFFDVPDILLTGFLTCLATVIPMVGTALV 253

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +  +++Y+ + G++FN   L ++G + +  +D  +R  L      +  L T FG+V G+ 
Sbjct: 254 WFPIAVYMALSGDLFNGIGLAIFGTLIISQLDNLIRFILQKRMADIHPLITIFGVVIGLS 313

Query: 322 TMGLLGLFIGP 332
             G +G+  GP
Sbjct: 314 LFGFMGVIFGP 324


>gi|240171099|ref|ZP_04749758.1| hypothetical protein MkanA1_17441 [Mycobacterium kansasii ATCC
           12478]
          Length = 385

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 67/351 (19%), Positives = 132/351 (37%), Gaps = 7/351 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E  L  +  +  + M  +L   YFL+ +F  ++ A +  +   P+++ F  +   S+   
Sbjct: 4   EFTLTQKRALAILTMVALLFGAYFLRDYFVLIVVAAVGAYLFTPLFTWFNKRL--STGLS 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP--VPRWLSDIPGGMWAS 120
           A    ++ +    +P+  L    ++++  +V  V        P  +   +  +   + A 
Sbjct: 62  ATCTVLTALASVFIPVALLVALAVVQVARMVDNVAEWFNTTDPSELGDKVLRLVNDLLAR 121

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             +      P+ L+    +  +T G   +       G        S I  +        +
Sbjct: 122 VPFLHVTVTPEMLRNAMISAARTVGTWLLHVLQGAAGS-LAGAVTSAIVFLYVFVALLLN 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  L   L         R +  ++R T  G  +IA+ +G+   ++ +LAG   
Sbjct: 181 RDKLRTLIGQLNP-LGEEVTDLYLRKMGSMVRGTVNGQFVIALCQGVAGAASIYLAGFHH 239

Query: 241 HVA-LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
                 ++   +++IP G  I      I ++  GNI     + LW  + +  +D  LRP 
Sbjct: 240 GFFIFAIVLTALSIIPLGGGIVTIPFGIGMIFYGNIAGGVFVVLWHLLVVTNIDNFLRPI 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           LV    +L        +  G+   G  G+ IGPVLM LI       +   K
Sbjct: 300 LVPRDARLNSALMLLSVFAGIGMFGPWGIIIGPVLMILIVTTIDVYLAVYK 350


>gi|190889747|ref|YP_001976289.1| hypothetical protein RHECIAT_CH0000115 [Rhizobium etli CIAT 652]
 gi|190695026|gb|ACE89111.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
          Length = 385

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 65/332 (19%), Positives = 132/332 (39%), Gaps = 7/332 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I      ++  +  F   V+ + I+    +PI+++            AV+  V  + L 
Sbjct: 32  IIGLFAYWTMVLIAPFALIVIWSAILAVALFPIFAALSGLIGNRPVIAAVVIVVFSLVLI 91

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
           I PL  +        + L+ K+   N      P  + + P  G      W +  S   + 
Sbjct: 92  IAPLALVAVNFADAAQALIGKLREGNFTLPAAPAAIREWPVVGERIHGAWNQIASDLAAT 151

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            I  +  ++      + + AS  G   L + +SI+   I    F     S++  +  L  
Sbjct: 152 IIKFQAPIREVTAVIVAKLAS-IGGGVLSFVVSIVLSGI----FLTRSASLAAAIQVLAS 206

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            +        +R+    +R+   G+  +A  + L+ G  + L  +P+   L  I  ++ +
Sbjct: 207 RIAGEKGVGFARLAGTTVRNVSRGVIGVAFLQALLCGLCFALFDIPAGGPLTFIVFVLCL 266

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +  G  +    V ++         A    +  AI + I+D  L+P L+   +  P     
Sbjct: 267 MQLGPALVLLPVILWAWFSWPTSIALVFTVV-AIPIMIIDNILKPILMARGLSTPMPVIL 325

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            G++GG  + GLLGLF+GPV++++   + +  
Sbjct: 326 IGVIGGTLSQGLLGLFLGPVVLSVFYELLRAW 357


>gi|301058702|ref|ZP_07199703.1| putative ATP synthase F0, A subunit [delta proteobacterium NaphS2]
 gi|300447266|gb|EFK11030.1| putative ATP synthase F0, A subunit [delta proteobacterium NaphS2]
          Length = 370

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 66/309 (21%), Positives = 132/309 (42%), Gaps = 10/309 (3%)

Query: 6   LNPQGIMRWMIMFIILV----SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +  + + R++++ ++L      L  ++ F   +  A +      P+Y  F  +       
Sbjct: 1   MKKETVGRFVLILLVLAISALFLSMIRDFLMALFLAALSSAMVHPLYKRFERRFGGRRGP 60

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            ++   + ++ L ++PL+ L    + +  ++   V    QH +  P  LS++   +   E
Sbjct: 61  ASITTLLLMVILVLIPLVGLLGIVVGQAIKVGESVTPWIQHQVAQPGALSELLQKLPFYE 120

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
               H++  + +       L      F     S F M  + +       +  +FFF  DG
Sbjct: 121 ----HIAPYREVIFQKAGALVGTVSKFFINSLSSFTMGTVSFLFMFFLFLYTMFFFLMDG 176

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + Q++      L     +++ +    V R+T  G  +I I +G + G A W+ G+PS 
Sbjct: 177 DKLLQKILYYLP-LEDQDEQRLLKRFTSVTRATLKGTAVIGIIQGGLAGLALWVVGIPSA 235

Query: 242 VALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           V  G I A++++IPG G  + +  V I L+  G+      L L+  + +  +D  LRP L
Sbjct: 236 VFWGAIMAVLSVIPGIGTGLVWGPVGIVLIAGGHYGKGIGLILFCGVVVGSIDNFLRPRL 295

Query: 301 VGGPIKLPF 309
           VG   ++  
Sbjct: 296 VGRDTQMHD 304


>gi|325280258|ref|YP_004252800.1| hypothetical protein Odosp_1595 [Odoribacter splanchnicus DSM
           20712]
 gi|324312067|gb|ADY32620.1| protein of unknown function UPF0118 [Odoribacter splanchnicus DSM
           20712]
          Length = 349

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 57/342 (16%), Positives = 136/342 (39%), Gaps = 20/342 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I+ + +V  +    F   +L A  I           I KK    + +A +  +  + +
Sbjct: 14  TIILVMGVVIFFKATPFLGGLLGAATIYILLRNQMLYLIEKKHMKKSLMATLMLIETILI 73

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           F++P+  + +        L+SK+   N     +   +  +             L   ++ 
Sbjct: 74  FLIPISLVVWL-------LISKLQAINLDPKSLMEPIGHV-----------SKLVQEKTG 115

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
             +         +  +P+          ++ ++++ +I+ L+F    G  +   +  +  
Sbjct: 116 YDVLSKGNIGALLSVLPKVGQILMGSISNFIINVLVLILVLYFMLVGGRKMEDYIIDILP 175

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  + +      V++S  +G+ ++AI +G +    Y++ G P  +  GV++    +
Sbjct: 176 -FNQRNKRDVLHEFHMVVKSNAIGVPLLAIIQGGIAMLGYYIFGAPEVILWGVVSCFATV 234

Query: 254 IPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP  G  I +  +++Y+   G+ + A  L ++  + +  VD  +R  L         L T
Sbjct: 235 IPVIGVAIVWIPLALYIGATGHWWTALGLSVYCIVIVANVDNLIRSVLQRKMADTHPLIT 294

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            FG+V G+   G +G+  GP+L+++  +  +       E  +
Sbjct: 295 IFGVVIGLSLFGFMGIIFGPLLLSIFVLCVQIFKAEYLEEPQ 336


>gi|303243971|ref|ZP_07330310.1| protein of unknown function UPF0118 [Methanothermococcus
           okinawensis IH1]
 gi|302485623|gb|EFL48548.1| protein of unknown function UPF0118 [Methanothermococcus
           okinawensis IH1]
          Length = 343

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 61/348 (17%), Positives = 140/348 (40%), Gaps = 17/348 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +M+  ++ + L  +Y    F   +  +    +   PIY                +A +
Sbjct: 7   RLLMKIFVLGVFLAIVYMTYPFLDTLALSCAFAYMGKPIYDKLKPHTGN------TLAAI 60

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKV--VLANQHGIPVPRWLSDIP--GGMWASELWT 124
             +  FI+P + + Y  + E+   + ++     N   +     L+++           W 
Sbjct: 61  ICLLAFIIPTVIVGYIVLKELLIFLQQINIQSLNLQSMDTVERLNNLLYKVSSIFGYSWQ 120

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                  +      ++L+    + + +      MI  +  +  + ++   ++F +DG  +
Sbjct: 121 VDEQTLSNYISQILSYLEPYIKNSLAQL-----MILPEIAIKTMIVLFMTYYFLKDGHVV 175

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + + +     +    +     + +  ++ F+G  + +I  G++ G  Y++ G+P+   L
Sbjct: 176 KKAILAQVPDKYYEKTELFLNNLNESYKNLFIGNALTSIAIGVISGIGYYIIGIPNAFIL 235

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVG 302
            VIT + A++P  G    +  +SIY L+ G I     L L+G I L  + D  +RP +V 
Sbjct: 236 AVITGVFALLPIIGGWTVYIPLSIYYLMTGEIVKGIELLLFGWIFLSTLPDFVIRPLIVK 295

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
               +         + G  T+GL G  +GP+++     +W+  +   K
Sbjct: 296 KESDVHPSLILIAFLIGPLTLGLGGFAMGPLIVGAFDALWRVKLRESK 343


>gi|284165585|ref|YP_003403864.1| hypothetical protein Htur_2311 [Haloterrigena turkmenica DSM 5511]
 gi|284015240|gb|ADB61191.1| protein of unknown function UPF0118 [Haloterrigena turkmenica DSM
           5511]
          Length = 393

 Score =  149 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 61/341 (17%), Positives = 139/341 (40%), Gaps = 17/341 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q  +  + +  I++ L  +  +   VL  +++ +   P+      +        A ++ +
Sbjct: 14  QPALTALALIAIVLGLLIVLPYLQYVLFGVVLAYILLPLQKRLEERV--RPMIAAFVSVI 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + + ++PLL++      +   LV  +         +   L+D    +  + L+  +  
Sbjct: 72  VALLVIVIPLLYILSVAFQQSTLLVEAIREGEIDLQMIEGALADRGYPVDLTGLYESYQD 131

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                         + G+  +   A           + +   +   F   RDG  +   L
Sbjct: 132 A------------ISTGLRGLANNALDIVGGLPGILIGLTITLFVCFALLRDGDRLIDWL 179

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +   +     +++   +  +++++ +   ++A  + ++LG    + G+P+ V L V+T
Sbjct: 180 YRVVP-IDDEIQRELFTELDHLMQASVISNVLVAAIQAVMLGVGLAVLGIPAVVLLTVLT 238

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++ ++P  GA   +  VSIYL+  G    A  L ++G + + + D  LRP L+G    +
Sbjct: 239 FVLTLLPLVGAFGVWLPVSIYLVAIGRPVAAAALAVYG-LFVTVSDTYLRPALIGRTSAI 297

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
                  G+ GG+ T G +GLF+GPV++    V+       
Sbjct: 298 NSAIIVVGIFGGLITFGAVGLFVGPVVLGGAKVVLDIFARE 338


>gi|255535413|ref|YP_003095784.1| hypothetical protein FIC_01274 [Flavobacteriaceae bacterium
           3519-10]
 gi|255341609|gb|ACU07722.1| hypothetical protein FIC_01274 [Flavobacteriaceae bacterium
           3519-10]
          Length = 354

 Score =  149 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 62/345 (17%), Positives = 146/345 (42%), Gaps = 16/345 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
            ++ Q  + +  +F++ + L+ L  F + VL A+ +   +   Y     +K+ +S  +  
Sbjct: 7   QISVQKALIFTALFLVALILFELNYFMSGVLGAVTLYVLTRNFYLRLTEEKKWNSNLVIT 66

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +    V+  F VPL  +    + ++ E+VS      +    V               ++ 
Sbjct: 67  LIIFLVIITFAVPLWIILEILIPKINEIVSDREAIVEKYNAV--------------RVFL 112

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           ++  + +   +          ++ +  +             +I   +  L+F  +    +
Sbjct: 113 ENNQYTKRFDLQLSNERIMQAVNKVISYIPSTLNWVGQMLGNIFVALFILYFMLKQSRIM 172

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            Q+   L   +     K   +    +IRS   G+ I+ + +G++    Y++ GV + +  
Sbjct: 173 EQKFKELLP-VSRESKKYFIQHNAALIRSNAYGIPILGLSQGIIAIIGYYIFGVENAIFW 231

Query: 245 GVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           G++T   +++P  G  I +  + IY +  G++ N   L  +  + +  +D  LR  L+  
Sbjct: 232 GLLTGAASIVPVVGTMIVYLPICIYQVATGDVNNGLFLAGFCLLFVGGIDNVLRLTLLKK 291

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
              +  L T FG++ G++  G++GL  GPVL+++  ++++   M 
Sbjct: 292 MADIHPLVTVFGVLLGLQMFGVMGLVFGPVLLSMPGILYRIFEME 336


>gi|60681100|ref|YP_211244.1| putative transmembrane protein [Bacteroides fragilis NCTC 9343]
 gi|253563134|ref|ZP_04840591.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265762981|ref|ZP_06091549.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|60492534|emb|CAH07305.1| putative transmembrane protein [Bacteroides fragilis NCTC 9343]
 gi|251946910|gb|EES87192.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263255589|gb|EEZ26935.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|301162588|emb|CBW22135.1| putative transmembrane protein [Bacteroides fragilis 638R]
          Length = 332

 Score =  149 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 64/333 (19%), Positives = 133/333 (39%), Gaps = 30/333 (9%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +  F   +L AL I            ++     +F A++ T   +  F+VP+  + +  +
Sbjct: 25  ITPFLGGLLGALTIYILVRKQMIYLGARM--KRSFAALLITGEAILCFLVPISLIVWMLV 82

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
                 +  + L  Q  I     L+ I       +                   L ++ +
Sbjct: 83  ----NKLQDINLDPQAIITPVEELAGIIKAKTGYD------------------VLGSDTL 120

Query: 147 DFIPRFASRFGMIFL----DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            FI     + G   +     + +++  ++  L+F    G  +   +D +         ++
Sbjct: 121 SFIVSLLPKIGQAVMGGISSFAVNLFVLVFVLYFMLIGGTKMEAYIDDILP-FNEKNTRE 179

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
           ++  +  ++RS  +G+ ++A+ +G V    Y++ G P+   +GV+T    +IP  G  + 
Sbjct: 180 VTHEINMIVRSNAIGIPLLAVIQGGVALIGYFIFGAPNAWLIGVLTCFATIIPMVGTALV 239

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +  V+ YL + G   NA  L  +G I +   D  +R  L         L T FG+V G+ 
Sbjct: 240 WFPVAAYLALTGEWANAIGLAAYGGIVVSQCDNLIRFILQKKMADTHPLITIFGVVIGLS 299

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             G +G+  GP++++L  +          +NK+
Sbjct: 300 LFGFMGVIFGPLVLSLFLLFVDMFKKEYLDNKK 332


>gi|118468766|ref|YP_889482.1| hypothetical protein MSMEG_5237 [Mycobacterium smegmatis str. MC2
           155]
 gi|118170053|gb|ABK70949.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2
           155]
          Length = 395

 Score =  149 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 133/352 (37%), Gaps = 7/352 (1%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
            +     +  +  + +  +L+  YFL+ FF  ++ A +  +   P+Y   + +   +S  
Sbjct: 3   NQFTTTQKRALAVVTVLALLLGAYFLRTFFVLIVMAAVGAYLFSPLYQRLLRRF--NSGI 60

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVL--ANQHGIPVPRWLSDIPGGMWA 119
              +  ++ + + I+P+  + +  ++++ ++V+ V    A+     +             
Sbjct: 61  AVTLTVLAALLMVIIPVSLIVFLAIVQVSQMVNTVSAWVADTDLSTLGDRTLQFINSTAD 120

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              +      P+SL+    T  +  G   +       G +      SIIF +        
Sbjct: 121 RVPFLDIDVTPESLRDAIVTVSQRVGEWLLGVLQGALGGLAGALTASIIF-LYVFISLLV 179

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           +   ++  +  L   L              +++ T  G  +IA+ +G+    + ++AG  
Sbjct: 180 NSEKVTTLVRQLNP-LGEEITDLYLAKTAAMVKGTVKGQFVIALAQGISGAISIYIAGFH 238

Query: 240 SHVA-LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           +      ++   +++IP G  I      I ++  GN      +  +  + +  +D  LRP
Sbjct: 239 NGFFVFAILLTALSVIPLGGGIVTIPFGIGMMFFGNTIGGIFIVAFHILVVTNIDNVLRP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            LV    +L        +  G+   G  GL IGPVLM +I       +   K
Sbjct: 299 ILVPKAARLDAALMLLAVFAGIAMFGFFGLVIGPVLMIIIVTTISVYLAVYK 350


>gi|183984335|ref|YP_001852626.1| hypothetical protein MMAR_4364 [Mycobacterium marinum M]
 gi|183177661|gb|ACC42771.1| conserved hypothetical transmembrane protein [Mycobacterium marinum
           M]
          Length = 385

 Score =  149 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 63/351 (17%), Positives = 136/351 (38%), Gaps = 7/351 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E  L+ +  +  + +  +L   YFL+ +F  ++ A +  +   P+++ F  +   ++   
Sbjct: 4   EFTLSQKRALAIVTLAALLFGAYFLRSYFVLIVVAAVGAYLFTPLFNWFNKRL--NAGLS 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI--PVPRWLSDIPGGMWAS 120
           A +  ++ + + IVP+  L    ++++  +V  +    +      +      +   + A 
Sbjct: 62  ATLTLLTALVVVIVPVGLLVGLAVVQIARMVENIAGWVKTTDLSSLGDKALQLVNELLAR 121

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             +       ++L+ +  +  +  G  ++  F             S I  +        +
Sbjct: 122 VPFLHVTVTAEALRKMMISVAQNVG-QWLLHFLQNAAGSLAGAVTSGIIFLYVFMALLLN 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  L   L         R +  ++R T +G  +IA+ +G+   ++ ++AG   
Sbjct: 181 REKLRTLIGQLNP-LGEEVTDLYLRKMGSMVRGTVIGQFVIALCQGVAGAASIYVAGFHH 239

Query: 241 HVA-LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
                 ++   M++IP G  I      I +   GNI     + LW  + +  +D  LRP 
Sbjct: 240 GFFIFAILLTAMSIIPLGGGIVTIPFGIGMAFYGNIGGGAFVVLWHLLVVTNIDNFLRPI 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           LV    +L        +  G+   G  G+ IGPVLM LI       +   K
Sbjct: 300 LVPRDARLNSALMLMSVFAGIGMFGPWGIIIGPVLMILIVTTIDVYLAVYK 350


>gi|209515626|ref|ZP_03264490.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
 gi|209503862|gb|EEA03854.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
          Length = 370

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 131/336 (38%), Gaps = 7/336 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  + +        F   +  ++I+  T +P+              +A +  +    + 
Sbjct: 24  LIAILAVFCFRIFAPFLNLMAWSVILAITLYPLQVLLRPMFGGKDGLIATLIVLVAFAVI 83

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQSL 133
           +VP   L       +++ ++       H  P    +S  P  G      W +  +    L
Sbjct: 84  LVPTYVLGLAVGDSIEKSIATFKGGGLHIPPPAESVSSWPVIGPRVYGFWQQASTDLTGL 143

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                  LK  G+          G   + + +++I   I + +    G    +    +  
Sbjct: 144 AQRFAPQLKEAGLALFAMLTG-LGAGLVIFFVALIIAGILMAY----GEKGYRSAVQIAS 198

Query: 194 HLF-PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            +  P    +I+ +    IR+   G+  IA  + L++G  + + G+P    L +   ++ 
Sbjct: 199 RISGPEEGTQIADLCTATIRAVAQGVVGIAFIQMLLIGIGFIVMGIPGAGLLALAVLLLG 258

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++   A +    V I++++   +  AT +F        + D  L+P L+G  + +P    
Sbjct: 259 IMQLPATLITIPVIIFVILTDGVSTATIIFSVYIFVAGLADNVLKPLLLGRGVAVPMPVV 318

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             G +GG+ T G++GLF+GPV++A+   ++   +  
Sbjct: 319 LVGALGGMVTGGVIGLFVGPVVLAVGYQLFWRWVRD 354


>gi|167572529|ref|ZP_02365403.1| hypothetical protein BoklC_22016 [Burkholderia oklahomensis C6786]
          Length = 231

 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 121/232 (52%), Gaps = 4/232 (1%)

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
           G   AS  W  +L+ P    +  E  +K      +  F   FG       +   FM++ L
Sbjct: 3   GSQQASGWWHAYLAKP----LHPEAAVKGVDDGAVVTFGRHFGSRIAHAAVLFGFMLVTL 58

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           F  ++ G  +S  L +     F      + + +   +  T  G+ ++  GEG++LG AY 
Sbjct: 59  FVIFQAGPRLSGALLTGVRRAFGDNGAALLQRMAAAVYGTVTGLVVVGFGEGVLLGVAYA 118

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
            AG+P    LG++TA+ AM+P  AP+ F   +++L ++G +  A  L  +G + +F+ + 
Sbjct: 119 FAGLPHAALLGLVTAVAAMLPFCAPLVFCGAALWLFVQGAVGWAIGLAAFGFVVVFVAEH 178

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            +RP L+G   +LPFL   FG++GG  T GLLGLFIGP LM ++ V+W E +
Sbjct: 179 FVRPVLIGNSARLPFLLVLFGILGGAETFGLLGLFIGPALMTVLTVLWVEWV 230


>gi|255536614|ref|YP_003096985.1| hypothetical protein FIC_02490 [Flavobacteriaceae bacterium
           3519-10]
 gi|255342810|gb|ACU08923.1| membrane protein, putative [Flavobacteriaceae bacterium 3519-10]
          Length = 367

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 62/350 (17%), Positives = 146/350 (41%), Gaps = 20/350 (5%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q  +  +I+ +  +  Y L  F   VL A+ +   S         +KE      + +  
Sbjct: 21  KQIFLLAVILLLAGIICYHLALFIPAVLGAITLYIISRKYNIYLQEEKEWKPWAASTVII 80

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V+ + + I+P+ F+    + ++    + +   N     +  ++                 
Sbjct: 81  VATLIILILPIYFIGDLLIEKLGNASAYMQKFNVFVDKIHDYV----------------- 123

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            + ++   +          D + ++++       +    +  M   L+F       + ++
Sbjct: 124 -YSKTKIDVLSKDNLNKLKDSVGKYSTLALSSTFNTLTVVASMYFILYFMLEK-PRLFER 181

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L      L  +    +   + K++ +  +G+ ++AIG+G+V    Y++   PS + L  +
Sbjct: 182 LVKSSAPLKKSNINLLGDKIRKMVIANAIGIPVVAIGQGIVAVIGYFIFDAPSAILLFAL 241

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           TA+ +MIP  GA I +  V I+++ +GN      L  +  + + + D  LR  L+     
Sbjct: 242 TAVASMIPIVGAAIVYVPVCIFMIAEGNTGQGLGLAAYCMVAVGLTDNLLRFTLLKRLEN 301

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           +  L T FG++ G++  G +GL  GP+L+++  ++ +       E++ ++
Sbjct: 302 IHPLNTVFGIIVGMKIFGFMGLIFGPILVSITVLLIQVYRDEFSEDENEL 351


>gi|291513866|emb|CBK63076.1| Predicted permease [Alistipes shahii WAL 8301]
          Length = 350

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 56/329 (17%), Positives = 131/329 (39%), Gaps = 20/329 (6%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I  + L     L  F   +L A+ I             ++    +  A +     +  
Sbjct: 15  VLIAGLGLTIFAELTPFLGGLLGAVTIYVLLRRQMWFLSERRRWRRSLAASLLLGEAIFF 74

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           F+VP+  + +  + +    +  V L  Q  I   R ++ +       +LW++        
Sbjct: 75  FLVPISLIVWMVVDK----IQGVALDPQSVITPVRHVAGLIQQKTGYDLWSESNLQ---- 126

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                     + + ++PR         +++ ++++ ++  L+F    G  +      +  
Sbjct: 127 ----------SVLGYLPRAGQWLVGGIVNFAVNLVVLLFVLYFMLIGGLRMETYCREILP 176

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  + + R +  ++RS  + + ++A+ +G+V    Y   GVP  +  GV+T    +
Sbjct: 177 -FDRRAARSVMREIHMIVRSNAIVIPLLAVSQGVVAYVGYLAFGVPEPLFWGVLTCFATI 235

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +P  G  + +  ++ Y+ + GN      L ++G + +  VD  +R  +      +  L T
Sbjct: 236 LPIVGTALVWLPLAAYMSLDGNWGQGVGLVMYGTLVVTQVDNLVRMVMQKKMADVHPLIT 295

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            FG+  G+   G +G+  GP+++A+    
Sbjct: 296 IFGVFIGLSLFGFMGVIFGPLMLAMFVFC 324


>gi|292491658|ref|YP_003527097.1| hypothetical protein Nhal_1573 [Nitrosococcus halophilus Nc4]
 gi|291580253|gb|ADE14710.1| protein of unknown function UPF0118 [Nitrosococcus halophilus Nc4]
          Length = 358

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/311 (22%), Positives = 132/311 (42%), Gaps = 7/311 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +  ++  I+   +  ++ +   +L A+I     +P+Y+  +          +VI  V
Sbjct: 13  KAFILVLLTAILAAFIAIIREYLIALLLAIIFTALLYPVYNQVLRILHGRRALSSVIVLV 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS-DIPGGMWASELWTKHL 127
             + +  +PLL L      E  ++   V    +  +P    LS DIP     SE    + 
Sbjct: 73  LAIFVIGLPLLGLLGAVAAEAVQISESVEPWLEKKLPDQHDLSRDIPEWFPFSEQLEPY- 131

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              +S  I     L  N  +F+ +  S      +++ +    M+ A+FFF   G      
Sbjct: 132 ---KSRIIAKGGELAGNAGEFLAKSISAVTQGTINFIVKFFIMLYAMFFFLMWGPDSLTV 188

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L      L       +      + ++    + +I + +G+++G A+W+AG+   +  G I
Sbjct: 189 LMRYIP-LTEKDRSLLLEKGLAITKAILKSILVIGVLQGILVGLAFWVAGLKGAIFWGAI 247

Query: 248 TAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             +++ IPG GAP+ +    IYL + G    A  + LWG+I +  VD  LRP +VG   K
Sbjct: 248 VVVLSAIPGLGAPLIWIPAVIYLALSGQTGWAIGMTLWGSIIVGSVDNILRPHIVGSEAK 307

Query: 307 LPFLPTFFGLV 317
           +P L      +
Sbjct: 308 MPDLLILLATL 318


>gi|303246923|ref|ZP_07333199.1| protein of unknown function UPF0118 [Desulfovibrio fructosovorans
           JJ]
 gi|302491630|gb|EFL51513.1| protein of unknown function UPF0118 [Desulfovibrio fructosovorans
           JJ]
          Length = 362

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/364 (19%), Positives = 141/364 (38%), Gaps = 14/364 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           + + M       R  ++ I L ++      L  F   ++ AL++     P+        +
Sbjct: 3   LAKNMAPSPDFYRPFLLAIFLAAIAIMGTLLWPFRHAMVLALVLATLVHPLRRHLPRPVQ 62

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG--IPVPRWLSDIP 114
                 A I T+  +   ++PL  L      E    +   +   + G       W+  +P
Sbjct: 63  TRRFLAATILTLLTILFVLLPLAGLVTLLTSEAVTFIHTTITWFRTGGLTEAVAWIHALP 122

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
              WA           + ++ L+ +     G+ F+       G       L ++ +++ L
Sbjct: 123 LPNWAKGYLDVSSIDLRKIETLALSSGGDIGLWFL-----SAGKGVASMGLQLLVLVMFL 177

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           F+   +G  +++ L      L       I      V ++  LG    ++  G+V G   W
Sbjct: 178 FYLLAEGERLTELLRKASP-LRRDQEDAIIARFKAVSQAVLLGGLGTSVAIGVVTGIGLW 236

Query: 235 LAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
           +AG+ S +  G +  I ++IP  G  +      I L+  G++  A  L L+  + +  VD
Sbjct: 237 IAGI-SPLLWGAVAVIASLIPVVGLSLIMLPAIISLIATGSVKMAIFLALYWLLVVSSVD 295

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             +RP  + G  ++  +  F  ++GGV   G LGL  GP+ +++  +  +    A  E  
Sbjct: 296 NVVRPLFMRGTARMSLVWVFVSIIGGVLMFGPLGLLYGPLALSISFLFLEIFFDAQNEAD 355

Query: 354 EKIS 357
           +  S
Sbjct: 356 DTSS 359


>gi|315443121|ref|YP_004076000.1| permease [Mycobacterium sp. Spyr1]
 gi|315261424|gb|ADT98165.1| predicted permease [Mycobacterium sp. Spyr1]
          Length = 391

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 61/355 (17%), Positives = 134/355 (37%), Gaps = 7/355 (1%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
            +  +N +  +  + +  +    YFL+ +   +  + ++ +   P+Y    ++       
Sbjct: 3   DDFTVNQKRALAVLTVVALGFGAYFLRNYVLLIAVSAVLAYLFSPLYRRLRTRMG--PGA 60

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA--NQHGIPVPRWLSDIPGGMWA 119
            A     + + +  +PL  + +   L++ E+V+ +           + + L D    + A
Sbjct: 61  AAATTLFAAIAVVALPLTGVLFLAFLQISEMVTGIGHWVEQTDLTALGQRLLDSANELLA 120

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              +      P+S++      L  N  +    FA       +     +I  +        
Sbjct: 121 RVPFADFTLTPESVRDAIGR-LGQNAGEIALGFARDSVGGIVSTVTGVIIFLYVFLALLT 179

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           +G  +      L   L           +  ++ +T  G  IIA  +G+    + ++AG+ 
Sbjct: 180 NGDKVLDLFRDLNP-LGDKVSDIYLAKIGAMVSATVKGQFIIAACQGVAGAISVYIAGIH 238

Query: 240 SHVALGVI-TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           +   + VI   +++ IP G+ I    + I + I GN      + ++  I    +D  LRP
Sbjct: 239 NGFFMFVIFLTVLSFIPLGSGIVVIPLGIGMAIFGNPVGGIFVVVFHIIATTNIDNLLRP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           FLV     L        +  G++  G +G+ +GPVLM +I        +  ++  
Sbjct: 299 FLVPRSAHLHPALMLLAVFAGLQMFGFIGIVLGPVLMIVIVTTISVYRVVYRDAP 353


>gi|255693657|ref|ZP_05417332.1| conserved hypothetical protein [Bacteroides finegoldii DSM 17565]
 gi|260620544|gb|EEX43415.1| conserved hypothetical protein [Bacteroides finegoldii DSM 17565]
          Length = 334

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 65/326 (19%), Positives = 131/326 (40%), Gaps = 31/326 (9%)

Query: 15  MIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +I+ I+ + +   +    F   +L A  I             KK+   +  A++ T   +
Sbjct: 12  LIVIILFMGVIIFRQITPFLGGLLGAFTIYILVRTQMHHLTEKKKIKRSISALLITAETI 71

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +F+VPL    +  + +++++        +    V  ++ +                   
Sbjct: 72  FVFLVPLGLTIWMIVNKLQDINLAPQTFVEPIQQVAGFIKE------------------- 112

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLD----YCLSIIFMIIALFFFYRDGFSISQQ 187
                    L  + + FI     R G + +       +++  MI  L+F    G  +   
Sbjct: 113 ---KTGYDVLGKDTLSFIVSILPRIGQLIMSSISSLAVNLFVMIFVLYFMLIGGKKMEAY 169

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           ++ +         +++   +  ++RS  +G+ ++AI +G +    Y + G P+ + LG +
Sbjct: 170 INDILP-FNETNTREVIHEINMIVRSNAIGIPLLAIIQGGIAMIGYLIFGAPNVLLLGFL 228

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T    +IP  G  + +  V+ YL I G+ F+A  LF +GAI +   D  +R  L      
Sbjct: 229 TCFATIIPMVGTALVWFPVASYLAISGDWFHAIGLFAYGAIVVSQSDNLIRFILQKKMAD 288

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGP 332
              L T FG+V G+   G +G+  GP
Sbjct: 289 THPLITIFGVVIGLPLFGFMGIIFGP 314


>gi|108760978|ref|YP_629833.1| hypothetical protein MXAN_1581 [Myxococcus xanthus DK 1622]
 gi|108464858|gb|ABF90043.1| putative membrane protein [Myxococcus xanthus DK 1622]
          Length = 395

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 64/336 (19%), Positives = 122/336 (36%), Gaps = 6/336 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            ++ F      A ++  T + +YS    K    +   A +    V+   ++PL  L  + 
Sbjct: 25  VVRPFAKAFFLAAVLAGTFYGLYSRLSRKLRGHNNLAAGVIVSGVILALLLPLGGLTAFI 84

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW--ASELWTKHLSHPQSLKILSETFLKT 143
           + E+ + V  V    Q    V   +  IP  +      L  +       L    +  + T
Sbjct: 85  VTEVSDGVKFVSDTVQREG-VEGLIGKIPSPVRGPVERLLERIPLEQAQLDETLQQQVST 143

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
            G                      + M+IALFF   +G  +   ++S+   L     ++I
Sbjct: 144 QGGTAARAVTGAVAA-TGSIAFQTVMMLIALFFLLTEGARLVSWVESVSP-LRRGQTREI 201

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
            R    V  +  +     A  +       + +A VP+ +    +   MA+IP        
Sbjct: 202 LREFRSVSVAVLVSSVATAGVQAAAALVGFLIARVPAALFFAGVAFFMALIPAVGAAIVV 261

Query: 264 AVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
            V+  L    G+ + A  L +WG + + +VD  ++P L    +       FF L+GG+  
Sbjct: 262 LVAAALMFFSGHPWAALFLAIWGTVVVGLVDNIVKPLLARRGMHQHAAIVFFALLGGLAA 321

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            G +GL +GP+++A    + +           +   
Sbjct: 322 FGTVGLLLGPLIVAFFLALLRIYERDYGRPTPRPGD 357


>gi|322372142|ref|ZP_08046683.1| hypothetical protein ZOD2009_21617 [Haladaptatus paucihalophilus
           DX253]
 gi|320548151|gb|EFW89824.1| hypothetical protein ZOD2009_21617 [Haladaptatus paucihalophilus
           DX253]
          Length = 331

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 69/348 (19%), Positives = 141/348 (40%), Gaps = 18/348 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +G + ++I    +++   +K F   VL+A+++G+   P+ + F S+     + L++
Sbjct: 1   MNRQRGFLLFLIAVFGVLATLLVKPFLQYVLAAILLGYILHPVQTRFESRVSARVSALSL 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           I+      + IVP+  +      +   LV  +V  +     +   +    G         
Sbjct: 61  IS--LTTLVVIVPVGAIAVIAAQQAFTLVRAIVQGDPRFAELIALVERYTGVTIHGRTLQ 118

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +               L       +   A        D  + +  M+  L++   DG   
Sbjct: 119 E--------------LLPAGSSSRLIENALGIFGGLSDALIGLTVMVFILYYLLTDGEEF 164

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              +      L      ++   + +V+    +G  ++ I +G++ G  + +AGVP  V  
Sbjct: 165 VAWIRR-CTPLPDDVQDELYSEMDRVMWGVLVGNLLVGIVQGILTGIGFVIAGVPGVVFW 223

Query: 245 GVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            V+T +++++P  GA + +   S+YL +      A  LF++G + + + D  LRP + G 
Sbjct: 224 TVVTTVLSLLPLIGASVVWLPASLYLFLVDRPIAAAFLFVYGTLVVSLSDNYLRPLVSGH 283

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             KL       G+ GGV   G +GLF GP+++ +   +         E
Sbjct: 284 EAKLNPGILVVGIFGGVYVFGFMGLFFGPIVLGIFRSLLTVFAREYAE 331


>gi|206601945|gb|EDZ38427.1| Conserved hypothetical protein [Leptospirillum sp. Group II '5-way
           CG']
          Length = 361

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 74/343 (21%), Positives = 144/343 (41%), Gaps = 5/343 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I   + + +  +    +  + + +L A I+ F   PI++  + K      + A++ T+  
Sbjct: 21  IAMALFLCLFGLLYLIIAPYLSALLWAAILSFAVTPIHAFLLKKI-GRPAWTALLTTLLF 79

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLS 128
           +   + PLL L      E+   V+ +    +     VP W++ +P  G     L T   +
Sbjct: 80  LGFVLAPLLSLGVPLSHELILAVNGIRTFLEDPHSKVPDWIARLPLVGSRIDTLLTGLKT 139

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           HP  L + +        I                + L     ++A F F   G +I   L
Sbjct: 140 HPIGLDVATAKL--QTHILAFGDQVLSLATNLGKWFLKFFIFLLAFFAFTLHGETIWATL 197

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L      +  +   +++P   R    G+   A+ + ++    +W AG+P+ + L  I 
Sbjct: 198 SRLFTQWAGSRMEIPLKVIPATTRGVLYGVFFTALFQAILSAIGFWGAGLPNVLLLTTIA 257

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            + A+ P GA + +    +YL +  +   A    LW  +   I++  ++P  +G    +P
Sbjct: 258 FLAALFPIGAVVVWVPSLLYLTVMHHWIAALIFGLWNLLGGGIIEHFIKPMFIGRSSDIP 317

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           FL    G++GG+   GL+GLFIGPV++++   + K    +  E
Sbjct: 318 FLAILLGVMGGLEAFGLIGLFIGPVVLSVTLALLKALASSPSE 360


>gi|218129309|ref|ZP_03458113.1| hypothetical protein BACEGG_00886 [Bacteroides eggerthii DSM 20697]
 gi|317475278|ref|ZP_07934544.1| hypothetical protein HMPREF1016_01524 [Bacteroides eggerthii
           1_2_48FAA]
 gi|217988486|gb|EEC54807.1| hypothetical protein BACEGG_00886 [Bacteroides eggerthii DSM 20697]
 gi|316908532|gb|EFV30220.1| hypothetical protein HMPREF1016_01524 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 336

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 126/307 (41%), Gaps = 20/307 (6%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +  F + +L AL I             K++   +  A I T   +  F++PL  + +  +
Sbjct: 27  ITPFLSGLLGALTIYILVRRQMIYLSEKRKMKRSIAATIITAEAILCFLIPLALVVWLAI 86

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
           + ++                   ++  P  + A    T  +   ++   +      +  +
Sbjct: 87  INLQN------------------INLDPQAIIAPFEQTAAIIKAKTGYNILGGDSLSFVL 128

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +PR           + +++  ++  L+F    G  + Q ++ +         + +   
Sbjct: 129 SSLPRIGQTLMGGISSFAVNMFVLVFVLYFMLIGGKKMEQYVNGILP-FNETNTQNVVHE 187

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAV 265
           +  ++RS  +G+ ++AI +G V    YW+ G P+ +  G +T   +++P  G  + +  +
Sbjct: 188 INMIVRSNAIGIPLLAIIQGGVAMIGYWIFGAPNILFSGFLTGFASVVPMVGTALIWVPI 247

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +IY+ + GN   A  L  +GA+ +  +D  +R  +      +  L T FG+V G+   G 
Sbjct: 248 AIYMALIGNWLQAIGLAAFGALVISQLDNLIRFIIQKKMADIHPLITIFGVVIGLSLFGF 307

Query: 326 LGLFIGP 332
           +G+  GP
Sbjct: 308 MGVIFGP 314


>gi|255022092|ref|ZP_05294096.1| protein of unknown function UPF0118 [Acidithiobacillus caldus ATCC
           51756]
 gi|254968450|gb|EET26008.1| protein of unknown function UPF0118 [Acidithiobacillus caldus ATCC
           51756]
          Length = 343

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/338 (21%), Positives = 141/338 (41%), Gaps = 12/338 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +++ I   + Y L  +  P+L   ++    WP                A++   + + +
Sbjct: 14  LVLLLIYAGAAYALSPYAGPLLMGAVLAVVGWPWQLRLERYLRLPRWLGALLHATAWVAV 73

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            I+P + +    + E+  LV +     Q G+P+      +    +     + HL+     
Sbjct: 74  IIIPAVAIVDSVLPELHLLVLRW----QTGMPLLTLPLSVQQLPFVGHWLSTHLAEING- 128

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                 +L     +      S  G ++  + L   F  + +F     G  I + L     
Sbjct: 129 -----AYLSNFFREHADIITSSLGQLWF-FTLHTFFAALTVFALTLHGERIREMLQLGAS 182

Query: 194 HLFP-AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            L+     ++      +  RS  +G+  + + EG+++G A+ +AG+       V TA+++
Sbjct: 183 ELWGRDRGERFLLAAREAARSVLIGLIGVGVIEGILIGIAFAVAGLKMWPLWLVATALIS 242

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
            IP GA     A +++L   G+      +F WG + + + D  +RP L G   + PF   
Sbjct: 243 PIPFGATTVVGAATLWLAFSGHWLVGLIIFAWGLVVITVADLVIRPLLTGSQTRAPFFLV 302

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           FF ++GG +  GL+GL IGP+L+ +   IW+     ++
Sbjct: 303 FFSILGGAQAFGLIGLIIGPILVLMARGIWRSWERRVR 340


>gi|119503128|ref|ZP_01625212.1| hypothetical protein MGP2080_10708 [marine gamma proteobacterium
           HTCC2080]
 gi|119460774|gb|EAW41865.1| hypothetical protein MGP2080_10708 [marine gamma proteobacterium
           HTCC2080]
          Length = 402

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 69/331 (20%), Positives = 134/331 (40%), Gaps = 11/331 (3%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
           +       F A +  ALI+  T +P++         S    A + + S + L  VP + L
Sbjct: 61  ICAKIFAPFAALMAWALILAITLYPLHLRLRDALAWSDARTATVISGSGLLLLGVPTVLL 120

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETF 140
               +  +  ++++    +   +P    + D P  G     +W +   +   L       
Sbjct: 121 GMSLVDHIASIITQWQQGSLDIVPPDESVKDWPLVGERVYAIWLEASDNLAELLADHGEE 180

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP-AY 199
           +++    F+    S    + L +  +I+   I + +    G + S  +  +   L   A 
Sbjct: 181 VRSLLKRFVGGTTSMLTTVGL-FLGAIVVAGIMMAY----GRAGSSAMGRIAVTLVGNAR 235

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            +++  +     RS   G+  +A+ + L+LG  +  A VP+   L V+  I  +I   A 
Sbjct: 236 GEELQVLSVATTRSVATGVIGVAVIQSLLLGIGFLWAEVPAAGVLAVLALITGIIQLPAL 295

Query: 260 ISFTAVSIYLLIKGNIFNAT----CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
           +    V I+L   G    A+     +     I   + D  L+P L+G  + +P      G
Sbjct: 296 LITLPVLIWLWTSGGAGEASAVMDVVITIYLIIAGLADNVLKPILLGRGVDVPMPVVLIG 355

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            +GG+  MGL+GLFIG V++A+   +    +
Sbjct: 356 ALGGMVGMGLIGLFIGSVVLAIGYQLLWAWV 386


>gi|51245086|ref|YP_064970.1| hypothetical protein DP1234 [Desulfotalea psychrophila LSv54]
 gi|50876123|emb|CAG35963.1| conserved hypothetical membrane protein [Desulfotalea psychrophila
           LSv54]
          Length = 356

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 68/339 (20%), Positives = 137/339 (40%), Gaps = 6/339 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +  +  ++  I  V L  ++ F   +  A ++     P +              +++  
Sbjct: 7   NKSSLLVLVFIISAVFLSMIQQFLMAIFMAGLLSALLSPSHKKLCILLGNRENLSSMLIV 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             ++ L ++PL  L    + +   +   +    Q  I  P  ++     +     + + L
Sbjct: 67  AGIVLLILIPLAILITIVVAQAITVSQSIAPWIQKFIAEPTSMT---YYLEKVPFYQEIL 123

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            +  ++   S   +      F+      F  + +++  S + M+   F+F   G  +  +
Sbjct: 124 PYRDTIIHKSGQLVG-AISSFLIDSLGSFTKLTINFIFSSVIMLYVTFYFLNVGKDLLDK 182

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L     +K+      V R+T  G  II I +G + G ++ +AG+      G +
Sbjct: 183 ILFFLP-LQDREEQKLLVRFTSVTRATIKGTIIIGILQGGICGISFAIAGIQGPFFWGTV 241

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A+M++IP  G  I +    I + +  N F    L +   +    +D  LRP LVG   +
Sbjct: 242 MAVMSVIPAVGTAIIWGPALIIIALMSNFFGVAVLAIGCGLIAGNIDNFLRPRLVGKDTE 301

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +  L   FG +GG+   GLLG+ IGP++ AL   +W+  
Sbjct: 302 MHDLFVLFGTLGGISMFGLLGIIIGPLIAALFLTLWQIY 340


>gi|297570117|ref|YP_003691461.1| protein of unknown function UPF0118 [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296926032|gb|ADH86842.1| protein of unknown function UPF0118 [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 379

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 66/343 (19%), Positives = 135/343 (39%), Gaps = 7/343 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
             ++     ++  +    F + ++ A ++     PIY     +  +   F ++     V+
Sbjct: 6   FLFLFAISSVLVGWLFWPFISVLVLAYLLTRLFRPIYQLINRRLPD--FFASLATCTLVV 63

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL--WTKHLSH 129
            L  +PL+F       E   L +    A        R     P  +   E      +   
Sbjct: 64  LLVFIPLVFFVMALAQEAHGLYNWGRGAGATLGARLREFQTTPLFVHLQETAALLGYSLQ 123

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
           P+ +        +  G+ F+   AS +    + + L     I+ +FF   +   +   + 
Sbjct: 124 PEDIGRALAGTARDLGL-FLYDQASTWAANLMMFVLGFFLTIVTIFFLLMEHDRLLNYIF 182

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L   L     +++     ++  +  +G  I A+ +G++ G  +W   +   V  G I A
Sbjct: 183 RLSP-LPDDQERQLFAKFDEITGAVLIGNGICAVIQGIIGGLIFWAFNLGPPVLWGAIMA 241

Query: 250 IMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++A +P  G  +      ++LLIKGN+ +A  L +   I    ++  L+P LVG   K+ 
Sbjct: 242 VLAFLPIVGIGLVMVPTVLFLLIKGNLVDAILLAILYGIITLFIESLLKPKLVGDRAKMH 301

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            L  F  ++GG+ T G LG+  GP+++     + +  +     
Sbjct: 302 ILLVFLSIIGGLNTFGFLGIIYGPLIVTAFLTLAEIYLANYDR 344


>gi|167765242|ref|ZP_02437355.1| hypothetical protein BACSTE_03630 [Bacteroides stercoris ATCC
           43183]
 gi|167696870|gb|EDS13449.1| hypothetical protein BACSTE_03630 [Bacteroides stercoris ATCC
           43183]
          Length = 336

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 58/307 (18%), Positives = 125/307 (40%), Gaps = 20/307 (6%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +  F   +L AL I             K++   +  A + T   +  F+VPL  + +  +
Sbjct: 27  ITPFLGGLLGALTIYILVRRQMIYLSEKRKIKRSIAATVITAEAILCFLVPLALVVWLAV 86

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
           +     +  + L  Q  I      + I        + + +                +  I
Sbjct: 87  VN----LQNINLDPQAVIAPFEEAASIIKARTGYNVLSGNSL--------------SFFI 128

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +PR           + +++  ++  L+F    G  + Q ++ L         ++I   
Sbjct: 129 SSLPRIGQTLMGGISSFIVNMFVLVFVLYFMLIGGKKMEQYVNELLP-FNETNTQEIVHE 187

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAV 265
           +  ++RS  +G+ ++A+ +G V    YW+   P+ +  G +T   ++IP  G  + +  +
Sbjct: 188 INMIVRSNAIGIPLLAVIQGGVAMLGYWIFDAPNILFSGFLTGFASIIPMAGTALVWIPI 247

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++Y+ + GN F A  L ++G++ +  +D  +R  +      +  L T FG+V G+   G 
Sbjct: 248 AVYMALIGNWFQAIGLVIFGSLVISQLDNLIRFVIQKKMADIHPLITVFGVVIGLSLFGF 307

Query: 326 LGLFIGP 332
           +G+  GP
Sbjct: 308 MGVIFGP 314


>gi|169630868|ref|YP_001704517.1| hypothetical protein MAB_3788c [Mycobacterium abscessus ATCC 19977]
 gi|169242835|emb|CAM63863.1| Conserved hypothetical protein [Mycobacterium abscessus]
          Length = 379

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 61/346 (17%), Positives = 127/346 (36%), Gaps = 7/346 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + ++  +    I   +YFL+ +   ++ A +  +   P+Y     +    S   A +  
Sbjct: 9   QKRVLAVLTGVGIAFGIYFLRDYLILIVVAGVAAYLFSPLYRRLGKRFG--SGIAATLTL 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA--NQHGIPVPRWLSDIPGGMWASELWTK 125
           +  +   ++P+  L Y   L++  +V  V           + +   D+   + A   +  
Sbjct: 67  LCALGAVVIPVGALVYVATLQITRMVDDVSSWVEGTDMTALGQKAFDVVNSVLARIPFVH 126

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
               P +L+    +  +  G   +    S  G +       IIF +            + 
Sbjct: 127 VQLTPDTLRQSIGSLTENVGHGLLQVLQSTVGSVAAAVAACIIF-LYVFVSLLVKQDKVL 185

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV-PSHVAL 244
             L  L   L           +  ++R T  G  +IA+ +G+   ++ ++AG        
Sbjct: 186 TLLRQLNP-LGEEITDLYLDKIGAMVRGTVKGQFVIAMAQGIAGAASVYVAGFRQGFFFF 244

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            ++   +++IP G  I      I +++ G+      +  W  + +  +D  LRPFLV   
Sbjct: 245 AILLTALSIIPLGGGIVTIPFGIGMILFGHPVGGLFVIAWHLLVVSNIDNVLRPFLVPRG 304

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            +L        +  G+   G  G+ +GPVLM +I       +   K
Sbjct: 305 ARLDPALMLLAVFSGIAAFGFWGIVLGPVLMIVIVTTIDVYLAVYK 350


>gi|255008391|ref|ZP_05280517.1| putative transmembrane protein [Bacteroides fragilis 3_1_12]
 gi|313146114|ref|ZP_07808307.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134881|gb|EFR52241.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 323

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 64/333 (19%), Positives = 133/333 (39%), Gaps = 30/333 (9%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +  F   +L AL I            ++     +F A++ T   +  F+VP+  + +  +
Sbjct: 16  ITPFLGGLLGALTIYILVRRQMMYLGARM--KRSFAALLITGEAILCFLVPISLIVWMLV 73

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
                 +  + L  Q  I     L+ I       +                   L ++ +
Sbjct: 74  ----NKLQDINLDPQAIIAPVEELAGIIKAKTGYD------------------VLGSDTL 111

Query: 147 DFIPRFASRFGMIFL----DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            FI     + G   +     + +++  ++  L+F    G  +   +D +         ++
Sbjct: 112 SFIVSLLPKIGQAVMGGISSFAINLFVLVFVLYFMLIGGTKMESYIDDILP-FNEKNTRE 170

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
           ++  +  ++RS  +G+ ++A+ +G V    Y++ G P+   +GV+T    +IP  G  + 
Sbjct: 171 VTHNINMIVRSNAIGIPLLAVIQGGVALIGYFIFGAPNAWLVGVLTCFATIIPMVGTALV 230

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +  V+ YL + G   NA  L  +G I +   D  +R  L         L T FG+V G+ 
Sbjct: 231 WFPVAAYLALTGEWANAIGLAAYGGIVVSQCDNLIRFILQKKMADTHPLITIFGVVIGLP 290

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             G +G+  GP++++L  +          +NK+
Sbjct: 291 LFGFMGVIFGPLILSLFLLFVDMFKKEYLDNKK 323


>gi|118616069|ref|YP_904401.1| hypothetical protein MUL_0177 [Mycobacterium ulcerans Agy99]
 gi|118568179|gb|ABL02930.1| conserved hypothetical transmembrane protein [Mycobacterium
           ulcerans Agy99]
          Length = 385

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 63/351 (17%), Positives = 136/351 (38%), Gaps = 7/351 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E  L+ +  +  + +  +L   YFL+ +F  ++ A +  +   P+++ F  +   ++   
Sbjct: 4   EFTLSQKRALAIVTLAALLFGAYFLRSYFVLIVVAAVGAYLFTPLFNWFNKRL--NAGLS 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI--PVPRWLSDIPGGMWAS 120
           A +  ++ + + IVP+  L    ++++  +V  +    +      +      +   + A 
Sbjct: 62  ATLTLLTALVVVIVPVGLLVGLAVVQIARMVENIAGWVKTTDLSSLGDKALQLVNELLAR 121

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             +       ++L+ +  +  +  G+  +  F             S I  +        +
Sbjct: 122 VPFLHVTVTAEALRQMMISVAQNVGLWLLH-FLQNAAGSLAGAVTSGIIFLYVFMALLLN 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  L   L         R +  ++R T +G  +IA+ +G+   ++ ++AG   
Sbjct: 181 CEKLRTLIGQLNP-LGEEVTDLYLRKMGSMVRGTVIGQFVIALCQGVAGAASIYVAGFHH 239

Query: 241 HVA-LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
                 ++   M++IP G  I      I +   GNI     + LW  + +  +D  LRP 
Sbjct: 240 GFFIFAIVLTAMSIIPLGGGIVTIPFGIGMAFYGNIGGGAFVVLWHLLVVTNIDNFLRPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           LV    +L           G+   G  G+ IGPVLM LI       ++  K
Sbjct: 300 LVPRDARLNSALMLTSAFAGIGMFGPWGIIIGPVLMILIVTTIDVYLVVYK 350


>gi|67923851|ref|ZP_00517311.1| Protein of unknown function UPF0118 [Crocosphaera watsonii WH 8501]
 gi|67854314|gb|EAM49613.1| Protein of unknown function UPF0118 [Crocosphaera watsonii WH 8501]
          Length = 354

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 62/342 (18%), Positives = 141/342 (41%), Gaps = 7/342 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +    I  ++I  ++      ++ F   VL  +I+    +P++    +          VI
Sbjct: 10  IVDLIIRLFLIGLLLAWCFLLIRPFLGIVLWGIILAIAIFPLFLWLKNLLGGRGKLAGVI 69

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWT 124
            T+  + + I P+  +    +   +     +   +    P P  +   P  G   + +W 
Sbjct: 70  LTLLGVGVIIGPVSVISTIFVNNAQAFADSLASGSLVIPPPPEGIETWPVIGERVNRIWE 129

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
               +  S+    +  L+    + +   A+  G++ L + +SII   I +     +   +
Sbjct: 130 LASVNLASVLSQFQPQLEALAKNLLF-LAANIGVVLLKFIVSIIIAGILI----INAEKL 184

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           + ++  +   + P   ++  ++    IR    G+  ++  + L++G  + + G+P    L
Sbjct: 185 NSRIRQVFLRITPKQGQEFLQLATGTIRGVTRGIIGVSALQSLLIGIGFMIGGIPFAGLL 244

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            ++  ++A+I  G+ +      I+         A    LW  +   +VD  L+P L+   
Sbjct: 245 TLLCLVLAIIQIGSGLVVFPAIIFAWSTMGTVTALLFTLW-MVPCTLVDNILKPILMSKG 303

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           + +P +    G++GG    G+LGLFIGPV+++L   +    I
Sbjct: 304 LPVPTIVILMGVLGGTLVHGILGLFIGPVILSLGYELLVAWI 345


>gi|170723630|ref|YP_001751318.1| hypothetical protein PputW619_4469 [Pseudomonas putida W619]
 gi|169761633|gb|ACA74949.1| protein of unknown function UPF0118 [Pseudomonas putida W619]
          Length = 365

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 71/348 (20%), Positives = 142/348 (40%), Gaps = 7/348 (2%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R   L    I   ++  ++L +    + F   +L ++I+  T +P+Y            +
Sbjct: 11  RSRGLLDVLIKAGLVAALVLFAFQVFQPFLELMLWSVILAVTLYPLYQRIKRGSGFKDGY 70

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWAS 120
            A +  + V+ + +VP+  +       +  LVS +   +      P  +++ P  G    
Sbjct: 71  AATLVVLLVLVVLLVPIYLVVMSIGESVDHLVSLIRSDSWSVPVPPDSVANWPLIGPKVH 130

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            LW     +   +       LK+ G   +   AS  G   L +  +II   + + F    
Sbjct: 131 ALWLSASENLADVIAQWMPQLKSAGRTALGAAASAGGAFLL-FVGAIIISGVIMAF---- 185

Query: 181 GFSISQQLDSLGEHLFPA-YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           G         +   +      K ++ +    IR+   G+  IA  + L++G  + + GVP
Sbjct: 186 GDRGEIAAQRIAMRISGEERGKPLATLCTATIRAVAQGVIGIAFIQMLLIGVGFVIKGVP 245

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               L ++  ++ +    A +    V IY+L       AT +F        + D  L+P 
Sbjct: 246 GAGMLAILILMLGIAQAPATLITLPVIIYVLNVEGFTVATIVFAVYTFVAGLADNVLKPL 305

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           L+G  + +P      G +GG+   G++GLF+GPV++A+  V++ + + 
Sbjct: 306 LLGRGVDVPMPVVLIGALGGMVVKGIIGLFLGPVILAVTYVLFWQWVA 353


>gi|148545994|ref|YP_001266096.1| hypothetical protein Pput_0748 [Pseudomonas putida F1]
 gi|148510052|gb|ABQ76912.1| protein of unknown function UPF0118 [Pseudomonas putida F1]
          Length = 365

 Score =  146 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 140/344 (40%), Gaps = 7/344 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L    I   ++  +++ +    + F   ++ A+I+  T +P++     +      ++A +
Sbjct: 15  LLDVLIKAGLVAALVIFAFQVFQPFLELMMWAVILAVTLYPLHCRIQRRTGLKQGYVATL 74

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWT 124
             + V+ L +VP+  +       +  LV+ +          P  ++  P  G     LW 
Sbjct: 75  VVLLVLVLLLVPIYLVMMSIGESVDSLVTLLKSGAWSVPVPPDSVATWPLIGPKVHALWL 134

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
               +  S+       +K  G+  +   AS  G   L +  +II   + + F    G   
Sbjct: 135 AASENMASVLNQWMPQIKGAGLTVLGAAASAGGAFLL-FIGAIIISGVIMAF----GERG 189

Query: 185 SQQLDSLGEHLFP-AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 +   +      K ++ +    IR+   G+  IA  + L++G  + + GVP    
Sbjct: 190 EIAAQRIAMRVSGAERGKPLATLCTATIRAVAQGVIGIAFIQMLLIGVGFIVKGVPGAGM 249

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           L ++  ++ +    A +    V IY+        AT +F        + D  L+P L+G 
Sbjct: 250 LAIVILMLGIAQAPATLVTLPVIIYVFNAEGFTVATIIFAVYTFVAGLADNVLKPLLLGR 309

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            + +P      G +GG+   G++GLFIGPV++ +  V++ + + 
Sbjct: 310 GVDVPMPVVLIGALGGMVVKGIIGLFIGPVILGVAYVLFWQWVA 353


>gi|308446460|ref|XP_003087184.1| hypothetical protein CRE_07198 [Caenorhabditis remanei]
 gi|308260230|gb|EFP04183.1| hypothetical protein CRE_07198 [Caenorhabditis remanei]
          Length = 241

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 58/246 (23%), Positives = 112/246 (45%), Gaps = 8/246 (3%)

Query: 43  TSWPIYSSFISKKE-ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ 101
            +WP+Y   +        T  A +    V+ +  +PL F  +    E + L   +     
Sbjct: 1   MTWPMYKRILRMFGSNRPTLSASLMITLVVLVVGIPLTFAIFILQHEGRNLYFDLQRQLS 60

Query: 102 HG-IPVPRWLSDIPG-GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI 159
            G + VP ++ ++P  G   S    +  + P SL      +++ +       +       
Sbjct: 61  SGHLTVPDFIRELPIIGKEVSRTVREINADPTSLSQTIGLWIQGH-----MNYGKFVLNE 115

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
                + + F I++LFFFYRDG +I +Q+    + L           + +  R+   G+ 
Sbjct: 116 ITKNLVKLGFAIMSLFFFYRDGQTILEQVSKALQMLIGPRIHHYLDTISETTRAVVYGVG 175

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNAT 279
           + A+ +  + G +Y++AGVP+ + L ++T +MA+IP G P+++ AVS++L  +G    A 
Sbjct: 176 LTAVAQAFLAGVSYFVAGVPNPMVLTIVTFLMALIPFGPPVAYGAVSLWLFSQGQTMEAI 235

Query: 280 CLFLWG 285
            +  WG
Sbjct: 236 GVMAWG 241


>gi|300711827|ref|YP_003737641.1| hypothetical protein HacjB3_12330 [Halalkalicoccus jeotgali B3]
 gi|299125510|gb|ADJ15849.1| hypothetical protein HacjB3_12330 [Halalkalicoccus jeotgali B3]
          Length = 343

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 74/351 (21%), Positives = 148/351 (42%), Gaps = 17/351 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M       +  +R + +    +SL  +  F + +L A+I+ +   PI      +      
Sbjct: 1   MSTRSERSRTFLRIVAIGAGGLSLLIVLPFLSWILVAVILAYVLRPIDDRLSRRLG--PG 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A ++ +  + L ++P+L +      + ++L +     +   + V              
Sbjct: 59  LSAGLSILGGLFLVVLPVLVVLGVAANQARQLAATFDPGDVARLDV------------VI 106

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                      ++       +KT     +    S  G    +  L    +   LF+  +D
Sbjct: 107 AEHLGVQVDMATVHDAFSGAIKTGARGLVGNLFSIIG-GLPELFLGFTVLFFVLFYLLKD 165

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G S  + L ++   + P   +++      ++ ++ +G  ++A  + ++LG A+ + G+ +
Sbjct: 166 GESAVEWLRAVVP-IEPDVREELFEETGLLLHNSLVGTAVVAGAQAVLLGVAFLVLGLGN 224

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            V   V T I AM+P  GA I +   SIYL + G    A  LF++GAI +  VD  LRP 
Sbjct: 225 VVFWIVTTFIAAMVPLLGASIVWIPASIYLFVVGRPVPAVALFVFGAIAISTVDNILRPM 284

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++    +L  + T  G+ GG+   G +GLFIGPV++ L  ++ +  +    
Sbjct: 285 VMRRGAQLSPVLTIIGIFGGIAVFGFVGLFIGPVVLGLTKLLIELLVREYP 335


>gi|288561240|ref|YP_003424726.1| hypothetical protein mru_1984 [Methanobrevibacter ruminantium M1]
 gi|288543950|gb|ADC47834.1| hypothetical protein mru_1984 [Methanobrevibacter ruminantium M1]
          Length = 361

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 76/328 (23%), Positives = 142/328 (43%), Gaps = 17/328 (5%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           VL   +I +   PI +   +K +        I+    + L ++PL+ LF Y   E+    
Sbjct: 2   VLLGAMIAYGLTPIANKIQTKIKY-----PSISIFLALILVVIPLILLFAYVFYEITVFA 56

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
                ++           +   G    EL      +  SL    E+ L      ++  + 
Sbjct: 57  DVFFNSSDLAGMDINNALNAFVGNLPVELQGFIKPYMGSLSTGLESAL-----SYVLAYT 111

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
            +    F +  + +  +I ++++F RDG  I + +     +   A++ +    +  V++S
Sbjct: 112 VKLVKGFSNVLIQLFVLICSIYYFTRDGDLIWENIFVFIPNEHKAFFDRTFYEIANVLKS 171

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIY-LLI 271
            F G  + A+  G++ G  Y+L G    + LG+IT I  +IP  G  I + A++IY + +
Sbjct: 172 IFYGHFLTAVIIGVMGGVGYYLLGYKFALFLGIITGIFQLIPIFGPWIVYWALAIYAIFV 231

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
            G+I  A    LWG   L + D  +RP L      +P L    G + G    G++G  +G
Sbjct: 232 AGDIVQAVLTVLWG-FVLSLSDMYIRPVLASNYADMPSLILLVGFMAGPYVFGIVGFILG 290

Query: 332 PVLMALIAVIWKESIMAIKENKEKISSN 359
           P+++ +   +    I ++KE  EK + N
Sbjct: 291 PLILGVCYAV----IKSLKEELEKDNWN 314


>gi|323956589|gb|EGB52327.1| ydiK protein [Escherichia coli H263]
          Length = 247

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 98/231 (42%), Gaps = 6/231 (2%)

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            +    ++      ++ T    F+ + A+  G   +   L ++F  +     Y  G  ++
Sbjct: 8   WIVGGTAIMAKVRPYIGTTTTWFVGQ-AAHIGRFMVHCALMLLFSAL----LYWRGEQVA 62

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           Q +      L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L 
Sbjct: 63  QGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLT 122

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           V+  +  ++  G         I+L   G+    T L +W    +  +D  +RP L+    
Sbjct: 123 VLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSG-VVGTLDNVIRPMLIRMGA 181

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            LP +    G++GG+   G++GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 182 DLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQP 232


>gi|255035092|ref|YP_003085713.1| hypothetical protein Dfer_1300 [Dyadobacter fermentans DSM 18053]
 gi|254947848|gb|ACT92548.1| protein of unknown function UPF0118 [Dyadobacter fermentans DSM
           18053]
          Length = 345

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 65/359 (18%), Positives = 140/359 (38%), Gaps = 22/359 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF--LKGFFAPVLSALIIGFTSWPIYSSFISKKEES 58
           M     N    + ++++   L  + F  L  FF   L AL +       Y     K++ +
Sbjct: 1   MAPEFNNRIRQVSFLLIVTALAIIVFKQLYIFFPGFLGALTLYILCRRYYFHLTEKRKWN 60

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
            +  A++  V  M   + P+         ++  ++      NQ    + R L +  G   
Sbjct: 61  KSLTAILFMVLFMACIVAPVYLALQMVFQKVTGIMDNPEQVNQAIAAISRQLREWTGQDL 120

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            ++               +   +      FIP   +   M+  +    ++ ++   +F +
Sbjct: 121 LTK--------------EATADMGKKAAGFIPAILNSSAMMLGN----LLMILFLAYFMF 162

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           ++G S+ + +D     L       ++     ++R+  LG+ +I++ +GLV    YW+ G+
Sbjct: 163 KNGRSMERTIDDFIP-LKHKNIDLLADETCGMVRANALGIPLISLIQGLVALLGYWVVGI 221

Query: 239 PSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
              V LG+IT   A  P  G  + +  + I+L  KG    A  L  +    +  +D   R
Sbjct: 222 EDFVLLGLITGFCAFFPVIGTALIWLPLVIFLFSKGESGKAIGLAAYSVTVIGNIDYVAR 281

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
              +     +  + T  GL+ G++  G  G   GP+L++ + ++ +        ++ + 
Sbjct: 282 ITFLQKVGNVHPVITILGLIAGLKLFGFWGFIFGPLLISYLMLLVRIYKNEFSGSRSEP 340


>gi|110634577|ref|YP_674785.1| hypothetical protein Meso_2229 [Mesorhizobium sp. BNC1]
 gi|110285561|gb|ABG63620.1| protein of unknown function UPF0118 [Chelativorans sp. BNC1]
          Length = 392

 Score =  145 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 65/343 (18%), Positives = 139/343 (40%), Gaps = 17/343 (4%)

Query: 3   ETMLNPQGIMRWMIMFIIL---VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           E M +    M  ++   +L   +S      F   ++ A+++G    P+           +
Sbjct: 21  ERMDSSAARMLVLVAAAVLGVYLSYRLALPFLPALVWAVVLGVLIAPVQPKLEMHLG--A 78

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
              A ++      + I+ LLF+    + E  +    +  A +        ++ +P     
Sbjct: 79  NVAAFVSASVAALIVILLLLFIVQQLVREAADGAMNIESALRSS-DWQSIINGVPIFSTL 137

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           +    + L     +  ++          ++   ++      ++  ++++ +   LF+F R
Sbjct: 138 AAWLGERLDLAGMMGRIA---------QWLTAQSATLLRGSINQAITLLLVFYMLFYFLR 188

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D     + L      L       I       + +T  G  I+A  +G + G  +WL G+P
Sbjct: 189 DRKLAVRALGEFSP-LNGDETAHIVAGFVDTVHATMFGTLIVAAVQGTLGGLMFWLLGLP 247

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           +    G++  ++A++P  GA + +   +I+L ++G    A  L +WG + +  +D  L P
Sbjct: 248 APAFWGLVMGLLAIVPVLGAFVVWVPAAIFLAVEGEWVRALVLVIWGGVIIATIDNLLYP 307

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             VG  +KL  +  F G VGG+   G  GL +GP  +++   +
Sbjct: 308 IFVGNRLKLHTVLAFIGAVGGIILFGASGLVLGPATISITLAL 350


>gi|187478932|ref|YP_786956.1| membrane protein [Bordetella avium 197N]
 gi|115423518|emb|CAJ50053.1| putative membrane protein [Bordetella avium 197N]
          Length = 371

 Score =  145 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 69/348 (19%), Positives = 139/348 (39%), Gaps = 9/348 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  ++       + F   +L ++I+  T  PI+              +++  V  M  F
Sbjct: 26  LIGGLVYWCYRVAEPFIGLLLWSMILAVTLAPIHERLARWLGGRPKSASLLLVVLTMLAF 85

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQS 132
           ++P   L       +  L  +        IP  P ++S++P  G    + W     + ++
Sbjct: 86  MIPGALLASSLAETVPRLFHQAEGEPALRIPDPPAFISNLPLVGGQLHDAWAAATENIET 145

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           +    +  L T    ++   A+  G  FL +  +I    + L +    G    +  D + 
Sbjct: 146 VLKPLQPAL-TGAAKWLLNSATSAGAGFLIFLAAIAIAGLVLIY----GPHSKRFADDIA 200

Query: 193 EHLF-PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
             +  P     +  +    IR+   G+  +A+ +  + G    LAGVP      ++   +
Sbjct: 201 SRIAGPQRGHDLILLTVSTIRAVAQGVIGVALIQAALGGLGMLLAGVPGAGIWAIVALAV 260

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            ++          V+IY+ +  +   A    +W  I + +++  L+P ++   I +P   
Sbjct: 261 CIVQLPILAVLGPVAIYVFLNNSTPVAIIFAIWSVI-VALLENVLKPLMLARGISIPLPI 319

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              G +GGV   GL+GLF+GPV  AL  V++ + +         +SSN
Sbjct: 320 ILIGALGGVLAAGLVGLFLGPVGFALGYVLFMQWVREPLAGPPVMSSN 367


>gi|300709901|ref|YP_003735715.1| hypothetical protein HacjB3_02650 [Halalkalicoccus jeotgali B3]
 gi|299123584|gb|ADJ13923.1| hypothetical protein HacjB3_02650 [Halalkalicoccus jeotgali B3]
          Length = 381

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 57/349 (16%), Positives = 147/349 (42%), Gaps = 14/349 (4%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  Q  +  + +   ++++  +  +   +L A+++ +   P++           T  A+ 
Sbjct: 44  LTEQSALGVIAIASGILAVLLMLPYLQYILLAVVLAYALMPLHKGLKRIVG--PTASALA 101

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
              +     I+P+L++    + +   L   ++        + + L      + ++++   
Sbjct: 102 LITASFLTIIIPVLYIVVIAVQQASGLTETLLEEGLSVTAIQQRLDSSGYSIDSNDVREA 161

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           + ++   +    +  L                       +S+   +  +F   RDG  + 
Sbjct: 162 YEANQDPINSGLDGMLGGT---------LEIIGGIPSIAISLTVTMFVVFGLLRDGDRLV 212

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
               ++   +      ++   + +++ ++ +G  I++  + ++LG  +W+  VP  + L 
Sbjct: 213 AWFQTIVP-ISDEVKTELFGRLDRLMWASVIGNVIVSAIQAILLGIGFWVLEVPGAIFLT 271

Query: 246 VITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           V+T ++A++P  G   ++  V+IYLLI G    A  +  +G I + + D  +RP ++G  
Sbjct: 272 VVTFLLALLPLIGVFGTWIPVAIYLLIVGRPLAALLMVGYG-ILVSLSDTYIRPAVIGKS 330

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            +L       G+ GG+  +G +GLF+GPV++    + +        ++K
Sbjct: 331 GELSSAVIVVGIFGGIAVLGPIGLFVGPVILGTAKISFDLFAREWYKSK 379


>gi|116252884|ref|YP_768722.1| transmembrane transporter protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257532|emb|CAK08629.1| putative transmembrane transporter protein [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 368

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 62/348 (17%), Positives = 140/348 (40%), Gaps = 5/348 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
              +    +   ++  ++ V    +  F   +L ++I+     P++    ++      + 
Sbjct: 14  RPSIIHAAVQLGIVALLVYVCARIMLPFLGLLLWSVILAVMLHPLHLRLSNRIGNR--WS 71

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A +  +  + + +VP+  +       +  LVS +   +    P P WL+D+P        
Sbjct: 72  ASLIGMVGVAVVLVPMYLVVTSLGSSIYWLVSGLQNHSLTIPPPPAWLADVPAVGAKLSA 131

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                +    L +     + T    ++  FA       L + LSI    + + +      
Sbjct: 132 GWSLAAANLPLALSQYGEMLTKPAAWLASFAGGLATGGLSFVLSIAIAAVLVAYAKGAAA 191

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                L+ +      A   ++  +    IR   +G+  +A+ + +++G  ++  G+P+  
Sbjct: 192 FALSLLELVTN--SKARGARLIHLTASTIRGVAVGVVGVAVIQSMLVGIGFFAIGLPAAG 249

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           AL ++T ++A++     +    V  Y+ +      A    +W      + D  L+P ++G
Sbjct: 250 ALTLVTFLLAVVQIPPLLLTLPVMAYVFVTEATTPAIIFAIWSFFA-GLSDNLLKPLMLG 308

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
               +P      G++GG+   GLLG+F+GPVL+A+  V+  E +    
Sbjct: 309 RGSDVPMPVILVGVIGGMIADGLLGIFVGPVLLAVGFVLLMEWLHERP 356


>gi|15608241|ref|NP_215617.1| hypothetical protein Rv1101c [Mycobacterium tuberculosis H37Rv]
 gi|15840540|ref|NP_335577.1| hypothetical protein MT1133 [Mycobacterium tuberculosis CDC1551]
 gi|148660887|ref|YP_001282410.1| hypothetical protein MRA_1112 [Mycobacterium tuberculosis H37Ra]
 gi|148822313|ref|YP_001287067.1| hypothetical protein TBFG_11122 [Mycobacterium tuberculosis F11]
 gi|167969235|ref|ZP_02551512.1| hypothetical protein MtubH3_14895 [Mycobacterium tuberculosis
           H37Ra]
 gi|215402931|ref|ZP_03415112.1| hypothetical protein Mtub0_04401 [Mycobacterium tuberculosis
           02_1987]
 gi|215410721|ref|ZP_03419529.1| hypothetical protein Mtub9_05210 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215426395|ref|ZP_03424314.1| hypothetical protein MtubT9_08412 [Mycobacterium tuberculosis T92]
 gi|215429975|ref|ZP_03427894.1| hypothetical protein MtubE_04673 [Mycobacterium tuberculosis
           EAS054]
 gi|215445267|ref|ZP_03432019.1| hypothetical protein MtubT_04733 [Mycobacterium tuberculosis T85]
 gi|218752788|ref|ZP_03531584.1| hypothetical protein MtubG1_04765 [Mycobacterium tuberculosis GM
           1503]
 gi|219556985|ref|ZP_03536061.1| hypothetical protein MtubT1_06650 [Mycobacterium tuberculosis T17]
 gi|253799860|ref|YP_003032861.1| hypothetical protein TBMG_02883 [Mycobacterium tuberculosis KZN
           1435]
 gi|254231381|ref|ZP_04924708.1| conserved membrane protein [Mycobacterium tuberculosis C]
 gi|254364007|ref|ZP_04980053.1| conserved membrane protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254550098|ref|ZP_05140545.1| hypothetical protein Mtube_06519 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260200141|ref|ZP_05767632.1| hypothetical protein MtubT4_08443 [Mycobacterium tuberculosis T46]
 gi|289442532|ref|ZP_06432276.1| conserved membrane protein [Mycobacterium tuberculosis T46]
 gi|289555113|ref|ZP_06444323.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605]
 gi|289569093|ref|ZP_06449320.1| conserved membrane protein [Mycobacterium tuberculosis T17]
 gi|289744845|ref|ZP_06504223.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289749636|ref|ZP_06509014.1| conserved membrane protein [Mycobacterium tuberculosis T92]
 gi|289753166|ref|ZP_06512544.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289757189|ref|ZP_06516567.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289761240|ref|ZP_06520618.1| conserved membrane protein [Mycobacterium tuberculosis GM 1503]
 gi|294993282|ref|ZP_06798973.1| hypothetical protein Mtub2_01932 [Mycobacterium tuberculosis 210]
 gi|297633640|ref|ZP_06951420.1| hypothetical protein MtubK4_05944 [Mycobacterium tuberculosis KZN
           4207]
 gi|297730627|ref|ZP_06959745.1| hypothetical protein MtubKR_06034 [Mycobacterium tuberculosis KZN
           R506]
 gi|306775256|ref|ZP_07413593.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
 gi|306781830|ref|ZP_07420167.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
 gi|306788174|ref|ZP_07426496.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
 gi|306792503|ref|ZP_07430805.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
 gi|306796908|ref|ZP_07435210.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
 gi|306802786|ref|ZP_07439454.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008]
 gi|306806968|ref|ZP_07443636.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
 gi|306967170|ref|ZP_07479831.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
 gi|307079086|ref|ZP_07488256.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011]
 gi|307083650|ref|ZP_07492763.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
 gi|313657957|ref|ZP_07814837.1| hypothetical protein MtubKV_06039 [Mycobacterium tuberculosis KZN
           V2475]
 gi|8928492|sp|O53449|Y1101_MYCTU RecName: Full=UPF0118 membrane protein Rv1101c/MT1133
 gi|2896738|emb|CAA17217.1| CONSERVED MEMBRANE PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|13880717|gb|AAK45391.1| membrane protein, putative [Mycobacterium tuberculosis CDC1551]
 gi|124600440|gb|EAY59450.1| conserved membrane protein [Mycobacterium tuberculosis C]
 gi|134149521|gb|EBA41566.1| conserved membrane protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148505039|gb|ABQ72848.1| hypothetical protein MRA_1112 [Mycobacterium tuberculosis H37Ra]
 gi|148720840|gb|ABR05465.1| conserved membrane protein [Mycobacterium tuberculosis F11]
 gi|253321363|gb|ACT25966.1| conserved membrane protein [Mycobacterium tuberculosis KZN 1435]
 gi|289415451|gb|EFD12691.1| conserved membrane protein [Mycobacterium tuberculosis T46]
 gi|289439745|gb|EFD22238.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605]
 gi|289542847|gb|EFD46495.1| conserved membrane protein [Mycobacterium tuberculosis T17]
 gi|289685373|gb|EFD52861.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289690223|gb|EFD57652.1| conserved membrane protein [Mycobacterium tuberculosis T92]
 gi|289693753|gb|EFD61182.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289708746|gb|EFD72762.1| conserved membrane protein [Mycobacterium tuberculosis GM 1503]
 gi|289712753|gb|EFD76765.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|308216193|gb|EFO75592.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
 gi|308325466|gb|EFP14317.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
 gi|308335191|gb|EFP24042.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
 gi|308338997|gb|EFP27848.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
 gi|308342664|gb|EFP31515.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
 gi|308346550|gb|EFP35401.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
 gi|308350470|gb|EFP39321.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008]
 gi|308355121|gb|EFP43972.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
 gi|308362999|gb|EFP51850.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011]
 gi|308366647|gb|EFP55498.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
 gi|323720381|gb|EGB29475.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
 gi|326904672|gb|EGE51605.1| conserved membrane protein [Mycobacterium tuberculosis W-148]
 gi|328459605|gb|AEB05028.1| conserved membrane protein [Mycobacterium tuberculosis KZN 4207]
          Length = 385

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 62/351 (17%), Positives = 128/351 (36%), Gaps = 7/351 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E  L  +  +  + +  +L   YFL+ +F  ++ A +  +   P++  F  +   ++   
Sbjct: 4   EFTLTQKRALAILTLIALLFGAYFLRNYFVLIVVAAVGAYLFTPLFKWFTKRF--NTGLS 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA--NQHGIPVPRWLSDIPGGMWAS 120
           A    +S +   +VP+  L    ++++  +V  V           +   +     G++  
Sbjct: 62  AACTLLSALAAVVVPVGALVGLAIVQIARMVDSVADWVRTTDLSTLGDKILQFVNGLFDR 121

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             +        +L+    +  +  G   +  F             S I  +        +
Sbjct: 122 VPFLHITVTADALRKAMISVAQNVGEWLLH-FLRDAAGSLAGVITSAIIFVYVFVALLVN 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  L   L         + +  ++R T  G  +IA  +G+   ++ ++AG   
Sbjct: 181 REKLRTLIGQLNP-LGEDVTDLYLQKMGSMVRGTVNGQFVIAACQGVAGAASIYIAGFHH 239

Query: 241 HVA-LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
                 ++   +++IP G  I      I ++  GNI     + LW  + +  +D  LRP 
Sbjct: 240 GFFIFAIVLTALSIIPLGGGIVTIPFGIGMIFYGNIAGGIFVLLWHLLVVTNIDNVLRPI 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           LV    +L        +  G+   G  G+ IGPVLM LI       +   K
Sbjct: 300 LVPRDARLNSALMLLSVFAGITMFGPWGIIIGPVLMILIVTTIDVYLAVYK 350


>gi|327398765|ref|YP_004339634.1| hypothetical protein Hipma_0605 [Hippea maritima DSM 10411]
 gi|327181394|gb|AEA33575.1| protein of unknown function UPF0118 [Hippea maritima DSM 10411]
          Length = 338

 Score =  144 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 57/342 (16%), Positives = 132/342 (38%), Gaps = 12/342 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             ++ I +     +  F+  ++  + I    +P++     K   S    +++  + V+ +
Sbjct: 8   LFLVIIAIAFTAIMLPFWKSLVWGVTIAIVFYPLFERLSKKI-SSKNIASLLTILIVLII 66

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             +P+    Y  + E ++ +  +         +   + +       +    K      S 
Sbjct: 67  IALPITLGVYIMVDESEKFMGNIENIKSSFNTIIVKIQNFSKLKIFAPYIDKLDDALFS- 125

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                  L  N    I +                +F  I  F+  RD       + S+ +
Sbjct: 126 -------LIKNTGVLITKNVGAIFSQTYTIAAEFLFSFIIAFYLIRDADDFLNYISSIID 178

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                 + KI + +   I +T LG  + A  +G++    + + G+ +      + A+ + 
Sbjct: 179 D--KESFYKILKSIRDSINATVLGGVLTAFIQGIIGAIGFLIVGLNAFFLWMFLIAMFSF 236

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +P  G  + +   +IYLLI G       +  WG++ +  VD   RP ++   I +  +  
Sbjct: 237 VPLVGTAVIWIPAAIYLLISGAYIKGAFILAWGSLAIGTVDNYFRPIIISSKINIHSMVL 296

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           FFG++G +   G +G+ +GPV++++  V+ K  +    + + 
Sbjct: 297 FFGILGSIVVFGPIGIILGPVIISVGDVLVKTYVSNKAKRRH 338


>gi|197121208|ref|YP_002133159.1| hypothetical protein AnaeK_0794 [Anaeromyxobacter sp. K]
 gi|196171057|gb|ACG72030.1| protein of unknown function UPF0118 [Anaeromyxobacter sp. K]
          Length = 364

 Score =  144 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 66/332 (19%), Positives = 125/332 (37%), Gaps = 9/332 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + ++ F+     A ++            ++        A + TV V+   ++P+  L   
Sbjct: 28  WMVRPFWVAFFLAAVLTAALRHWMEWLSARLRGRRALAAGLLTVGVLLAGVIPVAALGAV 87

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-MWASELWTKHLSHPQSLKILSETFLKT 143
            + E  + +  +  A Q    V   +S +PG     +      L  PQ            
Sbjct: 88  LIREAVDGIQWLRSALQSEG-VWGLVSRLPGPIEDLAHRAVAALGDPQRQLQQLAGQGGQ 146

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
                              + L    M+IALFFF  DG  +   +D+    L    ++ +
Sbjct: 147 AAA-----AVGGVLAATGTFVLQTAMMLIALFFFLVDGQRLIAWVDARVP-LRAGQFRTL 200

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISF 262
                +   S        A  + +   + Y++A  P+ + L V+T ++A+IP  GA    
Sbjct: 201 VEDFRRTTLSVVAATAATAGIQTVTALAGYFIARAPNPIFLAVLTLLVALIPAVGATAMV 260

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             V+      G+  +   L +WGA  + +VD   RP+L+ G + L     FF L+GG+  
Sbjct: 261 LVVAALQFATGHTVSGIFLAVWGAAVVSLVDNVARPYLLKGGMALHGGVVFFALLGGLAA 320

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            G +GL +GP++   +  +         +  +
Sbjct: 321 FGGIGLILGPLVATFLVTVLNMYRREFGKPSQ 352


>gi|197335961|ref|YP_002155739.1| hipothetical membrane protein [Vibrio fischeri MJ11]
 gi|197317451|gb|ACH66898.1| hipothetical membrane protein [Vibrio fischeri MJ11]
          Length = 353

 Score =  144 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 59/331 (17%), Positives = 123/331 (37%), Gaps = 5/331 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I  ++      LK F   V+   II    +PI +   +K   S   ++       + L +
Sbjct: 21  IAILVFWCFSILKPFMLLVVWGGIIATALYPIVTWGHNKFGISKGKVSAGLAFIGVVLLV 80

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +PL+ L         ELV+               + + P     +  +  H S      +
Sbjct: 81  IPLVALSTGLYTSGSELVAGYQNGTISIPKPSINVKEWPLIGDKAYAFGIHASSNLESVL 140

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           L         +  +       G  F+ + +S I        F  +     +    +   L
Sbjct: 141 LKYGEEVKAIVGKLASIVGSLGGGFIQFIISTIIAGA----FMANADKCERAFVLVANRL 196

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
              + + ++ +    +RS   G+  +A+ + ++ G      GVP+     ++  ++A+I 
Sbjct: 197 TGEHGEALTTLSKTTVRSVVQGVIGVAVIQSVMAGLGMAFVGVPAIGLWMLLVMLIAIIQ 256

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
               ++   V +Y+        A    +W  I +   D  L+P L+    + P L    G
Sbjct: 257 LPPILALLPVILYVFSVDTTTTAVLFLIWC-IVVSGSDAILKPMLLSRGSETPMLVILLG 315

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            +GG+   G++GLF+G V+++L   ++   +
Sbjct: 316 ALGGMAMSGIVGLFVGAVILSLTYQLFMVWL 346


>gi|313497077|gb|ADR58443.1| Permease [Pseudomonas putida BIRD-1]
          Length = 365

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 68/344 (19%), Positives = 139/344 (40%), Gaps = 7/344 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L    I   ++  +++ +    + F   +L A+I+  T +P++     +      + A +
Sbjct: 15  LLDVLIKAGLVAALVIFAFQVFQPFLELMLWAVILAVTLYPLHCRIQRRTGLKQGYAATL 74

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWT 124
             + V+ L +VP+  +       +  LV+ +          P  ++  P  G     LW 
Sbjct: 75  VVLLVLVLLLVPIYLVVMSIGESVDSLVTLLKSGAWSVPVPPDSVAAWPLIGPKVYALWL 134

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
               +  S+       +K  G+  +   AS  G   L +  +II   + + F    G   
Sbjct: 135 AASENMASVLNQWMPQIKGAGLTVLGAAASAGGAFLL-FIGAIIISGVIMAF----GERG 189

Query: 185 SQQLDSLGEHLFP-AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 +   +      K ++ +    IR+   G+  IA  + L++G  + + GVP    
Sbjct: 190 EIATQRIAMRVSGAERGKPLATLCTATIRAVAQGVIGIAFIQMLLIGVGFVVKGVPGAGM 249

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           L ++  ++ +    A +    V IY+        AT +F        + D  L+P L+G 
Sbjct: 250 LAIVILMLGIAQAPATLVTLPVIIYVFNAEGFTVATIIFAIYTFVAGLADNVLKPLLLGR 309

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            + +P      G +GG+   G++GLFIGPV++ +  V++ + + 
Sbjct: 310 GVDVPMPVVLIGALGGMVVKGIIGLFIGPVILGVTYVLFWQWVA 353


>gi|254481333|ref|ZP_05094578.1| hypothetical protein GPB2148_1806 [marine gamma proteobacterium
           HTCC2148]
 gi|214038496|gb|EEB79158.1| hypothetical protein GPB2148_1806 [marine gamma proteobacterium
           HTCC2148]
          Length = 337

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 68/333 (20%), Positives = 137/333 (41%), Gaps = 10/333 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
               F   +L ALI+G T +P++    SK   +    A +  ++ + L   P + L    
Sbjct: 1   MFNPFLNLMLWALILGMTLFPLHQKLASKFGGNQGRAATVMVLAGLLLLGYPAVKLSSSL 60

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQSLKILSETFLKTN 144
             ++ ++                 + + P  G      W +  ++       ++  +++ 
Sbjct: 61  ASQLTDIHHAYEAGTLALPEPNASVENWPVIGKNVYSAWQEAANNLPEFLADNKANIESV 120

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF-PAYWKKI 203
               +    S  G I L +  + I   I + F    G   S    ++   +  P    K+
Sbjct: 121 IKSGLAVAKSTAGGIGL-FMAAFILAGIMMAF----GHGGSGATLTIFSRIAGPEQGPKM 175

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
             +     RS  +G+  +A+ + +++G  + L GVP+   L +I  ++A++   A +   
Sbjct: 176 HNLATMTTRSVAVGVLGVAVIQAVLMGLIFILIGVPAAGLLALIIMMLAIVQLPAMLVGI 235

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
            V I++   G+   AT    W  + L   + D  L+P L+G  +  P      G +GG+ 
Sbjct: 236 PVIIWVWNGGD-AGATMNTFWTVVILVSGLADNVLKPLLLGRGVDAPMPVILIGALGGMI 294

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           + G +GLFIG V++A+   I+ + +   +E  E
Sbjct: 295 SAGFIGLFIGAVVLAVGYQIFMQWVAEHEEELE 327


>gi|290770140|gb|ADD61900.1| putative protein [uncultured organism]
          Length = 310

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 58/329 (17%), Positives = 131/329 (39%), Gaps = 20/329 (6%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
              +L AL I             K++   +  A + T   +  F+VPL  + +  ++ ++
Sbjct: 1   MGGLLGALTIYILVRKQMMYLSDKRKMKRSIAATLITAEAILCFLVPLGLVVWLAVVNLQ 60

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
                              ++  P  + A      ++   ++   +         I  +P
Sbjct: 61  N------------------INLDPQAIIAPFEEAANIIKAKTGYYILGKDTVAYVISILP 102

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
           R           + ++I  ++  L+F    G  + Q ++ L         + +   +  +
Sbjct: 103 RIGQAIMGGISSFAVNIFVLVFVLYFMLIGGKKMEQYVNDLLP-FNDDNTQNVIHEINMI 161

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
           +RS  +G+ ++A+ +G V    YW+ G P+ +  G +T   ++IP  G  + +  +++Y+
Sbjct: 162 VRSNAIGIPLLAVIQGGVAMIGYWIFGAPNILFAGFLTCFASIIPMVGTALVWFPIAVYM 221

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            + GN   A  L ++G   +  +D  +R  +      +  L T FG+V G+   G +G+ 
Sbjct: 222 ALIGNWVQAIGLAIYGGAVISQLDNLIRFIIQKKMADIHPLITVFGVVIGLSLFGFMGVI 281

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISS 358
            GP+L++L  +          + + K + 
Sbjct: 282 FGPLLLSLFFLFVDMFKRGYLDARGKTTE 310


>gi|148974917|ref|ZP_01811897.1| hypothetical membrane spanning protein [Vibrionales bacterium
           SWAT-3]
 gi|145965426|gb|EDK30675.1| hypothetical membrane spanning protein [Vibrionales bacterium
           SWAT-3]
          Length = 355

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 59/339 (17%), Positives = 126/339 (37%), Gaps = 7/339 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            ++      L+ F   V+   II    +P+  +  +K   S    + + +   + L ++P
Sbjct: 23  MLVYWCFSILRPFILLVVWGAIIATALYPVAVAISNKTGLSKGKASALLSFIGVLLLLIP 82

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQSLKIL 136
           L+ L         +L++ +             L +IP  G           S+ + + I 
Sbjct: 83  LVALSSGIYTSASDLMTGLQDGTLSLPKPKESLQEIPFIGEKVYATLVHASSNIEGVFIK 142

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               LK          A+          +  I   I    F  +       +  L   L 
Sbjct: 143 YAEELKA-----FATKAASILGSLGGGFIQFIISTIIAGAFMSNADKCQTGVTHLVARLT 197

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                ++ ++    +RS   G+  +A+ + ++      +AGVP+     +   ++A+I  
Sbjct: 198 DGKGVELVQLSKSTVRSVVQGVIGVAVIQSIMSAIGLVIAGVPAAAMWALAVLLIAIIQL 257

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
              ++     IY+    +   A+   +W  I +   D  L+P L+     +P L    G 
Sbjct: 258 PPILALLPAIIYMFSVESTLAASFFLVWC-ILVSGSDAILKPMLLSRGSHIPMLVILLGA 316

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +GG+   G++GLF+G V+++L   +    +    + ++K
Sbjct: 317 LGGMAMSGIVGLFVGAVILSLSYELMVSWLGLEPKEEDK 355


>gi|157962115|ref|YP_001502149.1| hypothetical protein Spea_2294 [Shewanella pealeana ATCC 700345]
 gi|157847115|gb|ABV87614.1| protein of unknown function UPF0118 [Shewanella pealeana ATCC
           700345]
          Length = 360

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 77/358 (21%), Positives = 141/358 (39%), Gaps = 6/358 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +     ++ + +          +  +   ++   I+     P+++    +   S    +V
Sbjct: 6   LKPHHLVLLFALAIAFYACYLLISPYLGSIVLGFIVSILFLPLHTRIQQRMPNSPNMASV 65

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASEL 122
            +   V  + ++PLLF+    M E    ++        G     +L+   I  G+     
Sbjct: 66  FSCTLVTVMVLIPLLFVAMAIMNEGINFMTNAYGWLTDGGA-KSFLAHPYIQSGVALLNK 124

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           W    +      +       T     +   ++       D  L    M+  LFFF RD  
Sbjct: 125 WLPFDTIKIDELVQQAAGKVTQLSSSLLTASTGIAGDVADTVLDFGLMLFVLFFFLRDQQ 184

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I      +   L  +    I   +  V +S  LG  + A+ +G + G A  LAG    +
Sbjct: 185 KIIDNTRHIIP-LSRSQQGLIFNEIGVVAKSAVLGAFLTALAQGALGGIAMSLAGFSG-L 242

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             G + A  + IP  G  + +   SIYL I G+   A  L +WG + +  +D  LRP+L+
Sbjct: 243 FWGSMMAFASFIPFVGTAMIWLPASIYLFITGDWQWALFLIVWGVVVIGSIDNFLRPWLM 302

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            G   +  L  FF L+GG++  GL+GL  GP++ A+  V+ +   +  K+  E+    
Sbjct: 303 QGNTGMSTLLLFFSLLGGLQLFGLIGLIYGPIIFAVTLVLARLYEIEFKDFIEQQDKE 360


>gi|170695146|ref|ZP_02886294.1| protein of unknown function UPF0118 [Burkholderia graminis C4D1M]
 gi|170139998|gb|EDT08178.1| protein of unknown function UPF0118 [Burkholderia graminis C4D1M]
          Length = 367

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 60/342 (17%), Positives = 129/342 (37%), Gaps = 7/342 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           ++  + +        F   ++ ALI+  T +P+              +A +  +    + 
Sbjct: 24  LVAVLAIFCFRIFFPFLNLMIWALILAITLYPLQVGLRRTLAGKDGLIATLIILIAFGVI 83

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQSL 133
           + P   L       +   ++          P    ++  P  G    + W +       L
Sbjct: 84  LAPTYLLGVAVAESIDNAIAVFKSGTFSIPPPADSVASWPVVGQRVYDFWQQAAVDLTGL 143

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            +     LK  G+  +       G   L +  ++I   I        G +  +    +  
Sbjct: 144 ALKFAPQLKDTGLALLATVTG-LGAGLLLFFAALIVAGI----LMAHGETGHKSAVEIAS 198

Query: 194 HLF-PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            +  P    +I+ +    IR+   G+  IA  + L++G A+ + G+P    L +   ++ 
Sbjct: 199 RISGPENGPQIAELCTSTIRAVAQGVVGIAFIQMLLIGVAFVVMGIPGAGLLALAVLLLG 258

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++   A +    V I+++    +   T +F        + D  L+P L+G  + +P    
Sbjct: 259 IMQLPATLITIPVIIFVIATQGVSAITIVFSVYVFVAGLADNVLKPLLLGRGVAVPMPVV 318

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             G +GG+ T G++GLFIGPV++A+   ++   +      K+
Sbjct: 319 LIGALGGMVTGGVIGLFIGPVMLAVGYQLFWRWVKDQPRPKQ 360


>gi|300710664|ref|YP_003736478.1| hypothetical protein HacjB3_06475 [Halalkalicoccus jeotgali B3]
 gi|299124347|gb|ADJ14686.1| hypothetical protein HacjB3_06475 [Halalkalicoccus jeotgali B3]
          Length = 335

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 66/340 (19%), Positives = 134/340 (39%), Gaps = 15/340 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +G +  +I  ++ VS   ++ F   +L AL++ F   P++     K        A 
Sbjct: 1   MNVRRGFLLGLIALLLAVSFAMVQPFLQYLLLALLLAFVLHPLHERLEPKVGG--QLSAA 58

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           I  V  +  F++P + +      +   L  ++      G           G      L  
Sbjct: 59  ILIVGSLIAFVIPFVVVGATVAGDAMALAQQLQSGGVSGF----------GLGQVEALIQ 108

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           ++      L      +        +   A           + +   +  L++  +DG  +
Sbjct: 109 QYTGFQIDLASRVSAY-AEQAAGIVAGSAPGVFGTISHAFVGLGLGLFVLYYLLKDGSKL 167

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              L      L      ++   + ++  +  LG  ++AI +G + G   ++ G+P+    
Sbjct: 168 MGWLRETLP-LPSTVQDELYASLNEITWAVLLGHVLVAIVQGAIAGIGLFVVGIPNATLW 226

Query: 245 GVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
             I  ++++IP  G+ + +   +IYL+  G       L L+G I +   D  LRP +V  
Sbjct: 227 TFIMIVLSLIPIIGSFLVWGPAAIYLVATGQTVFGVGLLLYGTIIVNATDNFLRPIVVDR 286

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             K+       G++GGV  +G +GLF+GPV++  + V+ +
Sbjct: 287 HAKINPSIIIIGVIGGVYLIGFMGLFVGPVIVGALKVVLE 326


>gi|209695373|ref|YP_002263302.1| membrane protein [Aliivibrio salmonicida LFI1238]
 gi|208009325|emb|CAQ79591.1| membrane protein [Aliivibrio salmonicida LFI1238]
          Length = 353

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 63/336 (18%), Positives = 134/336 (39%), Gaps = 7/336 (2%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           ++      L+ F   V+   II    +P+ S   +K   S   ++       + L +VPL
Sbjct: 24  LLYWCFSILRPFILLVVWGGIIATALYPVVSWGHNKFGISKGKVSGGLAFVGVLLLLVPL 83

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQSLKILS 137
           + L         EL++               ++D P  G  A     +  S+ +S+ +  
Sbjct: 84  IALSTGLYTSGSELITGYQDGTISIPKPAASMADWPVIGEKAYAFGVQVSSNLESVLLKY 143

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              +K      +   A   G  F+ + +S I   +    F  +     +    + + L  
Sbjct: 144 GEEVKAIAGQ-LASLAGSLGGGFIQFIISTIIAGV----FMANADKCERAFIVIADRLTG 198

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
            + + ++ +  K +RS   G+  +A+ + ++ G     AGVP+     ++  ++A+I   
Sbjct: 199 EHGEALTTLSKKTVRSVVQGVIGVAVIQSMMAGLGMAFAGVPAIGLWMLLVMLVAIIQLP 258

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
             ++   V  Y+        A    +W  I +   D  L+P L+     +P L    G +
Sbjct: 259 PILALLPVIFYVFSVDTTTTAVIFLIWC-IIVSGSDAILKPMLLSRGSNIPMLVILLGAL 317

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           GG+   G++GLF+G V+++L   ++   + +  + +
Sbjct: 318 GGMAMSGIVGLFVGAVVLSLTYQLFTVWLDSESKEE 353


>gi|150402189|ref|YP_001329483.1| hypothetical protein MmarC7_0262 [Methanococcus maripaludis C7]
 gi|150033219|gb|ABR65332.1| protein of unknown function UPF0118 [Methanococcus maripaludis C7]
          Length = 334

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 67/347 (19%), Positives = 137/347 (39%), Gaps = 23/347 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           + R  I+F      Y L  F   +  A+ + + + P+Y     K  +          +  
Sbjct: 9   LARGFIIFSFFALSYMLWPFIGIIALAVAVAYMTKPLYDVLRPKFGK------TYGAIIC 62

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +   ++P L L      ++   +  + + N      P            +++    +  P
Sbjct: 63  LLGIVIPSLLLVILVAEDVVTFLLSLDIENIISKVTP----------ILNDMGYLRVDGP 112

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           +  K +S+ +   +    +   A+          + ++F+    F+F +DG  +      
Sbjct: 113 EVSKPVSDIW---SLSKPLLDSAATQISAIPSLLMKLLFLSFMTFYFLKDGDRMQDSFML 169

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                     K     + K +++ F+G  + ++  G +    YWL G+P+ + LG ++ I
Sbjct: 170 YVPTEKKENAKIFLNEIHKALKTLFIGNAVTSVIVGFISIIGYWLIGIPNPITLGALSGI 229

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIKLP 308
           + ++P  G    +  ++IY L+ G I     L L+G I L +  D  +RP ++     L 
Sbjct: 230 LNILPVVGGWTIYVPLTIYYLLTGEIVKGILLGLFGIIFLSLAPDFAIRPRVISKDGDLH 289

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                   + G    G+ GL IGP+++A +  I K  +    EN+EK
Sbjct: 290 PAFVLIAFLIGPLVFGIPGLAIGPIIVATVYAIHK--VRKSIENREK 334


>gi|311280807|ref|YP_003943038.1| hypothetical protein Entcl_3510 [Enterobacter cloacae SCF1]
 gi|308750002|gb|ADO49754.1| protein of unknown function UPF0118 [Enterobacter cloacae SCF1]
          Length = 369

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 60/347 (17%), Positives = 128/347 (36%), Gaps = 8/347 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I+ +          F   +L A+I+  T +P+   F ++      + + +  +  + L 
Sbjct: 26  LILALASFCFTVFSPFLNMMLWAIILAVTLYPLQQYFAARLGGKQGWASTLLVLLGILLI 85

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
           + P + +       +  L+ K+   +    P    ++ IP  G     LW K       L
Sbjct: 86  VAPTIAMVSSLGESVSALIDKMGSGSLVIPPPSESIASIPVVGGKLHALWLKASVDLPGL 145

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                T L       +   AS  G   L + +S I   I + +    G + +     +  
Sbjct: 146 ISAYRTQLGDVAKQVLSVLAS-MGGGLLGFVVSFIVAGIMMAW----GAAGANSARRIAM 200

Query: 194 HLFPAY-WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            L        + ++    IR+   G+  +A+ + L+ G    LAG+P+     ++  I+ 
Sbjct: 201 RLTDENKGVALIKLCTSTIRAVAQGVIGVALIQALLAGVVMALAGIPAVGIFFILALILG 260

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNAT-CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           +      +        +   G+       ++    +   + D  L+P ++G  +  P   
Sbjct: 261 IAQIPVILVTAPAIAIMWHMGDHGTGLNIIYTVLLLIAGMADNVLKPLMLGRGVDAPMPV 320

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
              G +GG+   G+LG+FIG  L+++   I+   +     N    + 
Sbjct: 321 VLLGALGGMAASGILGMFIGATLLSIGYRIFMAWVNEGLANASSGND 367


>gi|149371682|ref|ZP_01891098.1| hypothetical protein SCB49_09765 [unidentified eubacterium SCB49]
 gi|149355309|gb|EDM43869.1| hypothetical protein SCB49_09765 [unidentified eubacterium SCB49]
          Length = 346

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 66/345 (19%), Positives = 131/345 (37%), Gaps = 23/345 (6%)

Query: 14  WMIMFIILVSLYF--LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
            +++ +++ SL F  +  + + VL A+ I     P  +  I +   +S+  A++  +   
Sbjct: 17  ILLIILLMGSLIFREMLPYLSGVLGAVTIYVLLRPWMNKLIKR-GWNSSIAAIMLMLVSF 75

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              ++P+  +      ++ + V                      G W  +L     S   
Sbjct: 76  LGILLPITGILLMLGNKIGDAVKNSERVTLAFKDQ--------VGKWEDKLGMNLHSQID 127

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              I            ++      F     +  +SI  M   LF+ +    +  Q L   
Sbjct: 128 VDSI----------SKWVTENLEGFAGGTFNIFISIGIMYFLLFYLFVGNRTFKQSLFEY 177

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              +     K I + +   +RS  LG+ ++AI +G++    + + GV       VI  + 
Sbjct: 178 IP-INKDNLKTIGKEINSTVRSNALGIPLVAIAQGIIALIGFLIFGVEDPFFWFVIVTVG 236

Query: 252 AMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +MIP  G  +    V I  L  G+ F A  +  +G + +   D  +R +++     +  L
Sbjct: 237 SMIPFIGTFVGILPVFILTLSSGSAFQAWGILAYGIVVVGSTDNIIRLYVLKRLDDVHPL 296

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            T  G++ GV   G +GL  GP+L++L  V  +          E+
Sbjct: 297 ITLIGVIVGVPLFGFIGLVFGPLLISLFIVTVRIYRKEFGRKVEE 341


>gi|26987450|ref|NP_742875.1| permease [Pseudomonas putida KT2440]
 gi|24982112|gb|AAN66339.1|AE016262_7 transporter, PerM family [Pseudomonas putida KT2440]
          Length = 365

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 68/344 (19%), Positives = 139/344 (40%), Gaps = 7/344 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L    I   ++  +++ +    + F   +L A+I+  T +P++     +      + A +
Sbjct: 15  LLDVLIKAGLVAALVIFAFQVFQPFLELMLWAVILAVTLYPLHCRIQHRTGLKQGYAATL 74

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWT 124
             + V+ L +VP+  +       +  LV+ +          P  ++  P  G     LW 
Sbjct: 75  VVLLVLVLLLVPIYLVVMSIGESVDSLVTLLKSGAWSVPVPPDSVAAWPLIGPKVHALWL 134

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
               +  S+       +K  G+  +   AS  G   L +  +II   + + F    G   
Sbjct: 135 AASENMASVLNQWMPQIKGAGLTVLGAAASAGGAFLL-FIGAIIISGVIMAF----GERG 189

Query: 185 SQQLDSLGEHLFP-AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 +   +      K ++ +    IR+   G+  IA  + L++G  + + GVP    
Sbjct: 190 EIATQRIAMRVSGAERGKPLATLCTATIRAVAQGVIGIAFIQMLLIGVGFVVKGVPGAGM 249

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           L ++  ++ +    A +    V IY+        AT +F        + D  L+P L+G 
Sbjct: 250 LAIVILMLGIAQAPATLVTLPVIIYVFNAEGFTVATIIFAIYTFVAGLADNVLKPLLLGR 309

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            + +P      G +GG+   G++GLFIGPV++ +  V++ + + 
Sbjct: 310 GVDVPMPVVLIGALGGMVVKGIIGLFIGPVILGVTYVLFWQWVA 353


>gi|212693909|ref|ZP_03302037.1| hypothetical protein BACDOR_03431 [Bacteroides dorei DSM 17855]
 gi|237708530|ref|ZP_04539011.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237724003|ref|ZP_04554484.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265751306|ref|ZP_06087369.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|212663441|gb|EEB24015.1| hypothetical protein BACDOR_03431 [Bacteroides dorei DSM 17855]
 gi|229437667|gb|EEO47744.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229457459|gb|EEO63180.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263238202|gb|EEZ23652.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 333

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 56/329 (17%), Positives = 126/329 (38%), Gaps = 20/329 (6%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I+ + L+    +  F   +L A  I             +K    +  A++  +  +  
Sbjct: 14  TIILGLGLILFIKMSPFMGGILGACTIYIMVRKQMFYLTQEKHFKKSITAILLLIEAIMC 73

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           F+VPL    +  + +++ +             +  WL    G    +             
Sbjct: 74  FLVPLSLAVWLLINKLQTVNVDTTGFIHTVTNLADWLHTKTGYDLLN------------- 120

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                    ++    +P            + ++   ++  L+F    G  + + +  L  
Sbjct: 121 -----AENISSIASILPAIGQFLMGSISSFAVNAFVLVFVLYFMLIGGIQMEKYIYELLP 175

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  K + + +  ++RS  +G+ ++A+ +G +    Y+L  VPS +  G +T    +
Sbjct: 176 -FSDTNKKNVLKEINMIVRSNAIGIPLLAVIQGGIATLGYYLFDVPSALLFGFLTCFATV 234

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP  G  + +  ++ YL + G+  +A  L L+  + +  +D  +R  L         L T
Sbjct: 235 IPIVGTALVWFPLAAYLALSGDWTHAIGLLLYCGLIVTNIDNLIRFILQKKMADTHPLIT 294

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            FG+V G+   G +G+  GP+L+++  + 
Sbjct: 295 IFGVVIGLSLFGFMGVIFGPLLLSIFILC 323


>gi|159906021|ref|YP_001549683.1| hypothetical protein MmarC6_1639 [Methanococcus maripaludis C6]
 gi|159887514|gb|ABX02451.1| protein of unknown function UPF0118 [Methanococcus maripaludis C6]
          Length = 334

 Score =  143 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 62/335 (18%), Positives = 131/335 (39%), Gaps = 21/335 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           + R  I+F      Y L  F   +  A+ + + + P+Y     K   S         V  
Sbjct: 9   LARGFIIFSFFALCYMLWPFIGIIALAVAVAYMTKPLYDVLKPKLGRSYGA------VFC 62

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +   ++P L L      ++   +  V + +      P            +++    +  P
Sbjct: 63  LLGIVIPSLLLAILVAEDVIAFLLSVDIDSIISKVTP----------ILNDIGYLRVDGP 112

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           +  K +S+ +  +     +   A++         + ++F+    F+F +DG  I      
Sbjct: 113 EVSKPVSDIW--SVSKPLLDSLATQI-SAIPSLLMKLLFLSFMTFYFLKDGDKIKNSFML 169

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                     +     + K +++ F+G  + ++  G +    YWL G+P+ + LG ++ I
Sbjct: 170 YVPKEKQKNAEIFVNEIHKALKTLFIGNAVTSLIVGFISIIGYWLIGIPNPITLGALSGI 229

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIKLP 308
           + ++P  G    +  +++Y L+ G I     L  +G + L +  D  +RP ++     L 
Sbjct: 230 LNILPVVGGWTIYVPLTVYYLLTGEIVKGVLLGFFGIVFLSLAPDFAIRPRVISKDGDLH 289

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                   + G    G+ GL IGP+++A +  I K
Sbjct: 290 PALVLIAFLIGPLVFGIPGLAIGPIIVATVYAIHK 324


>gi|298374135|ref|ZP_06984093.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
 gi|298268503|gb|EFI10158.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
          Length = 337

 Score =  143 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 52/339 (15%), Positives = 128/339 (37%), Gaps = 20/339 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I+ + ++  + +  F   +L A  I             K      F A++     +  
Sbjct: 17  TIILGLGVILFFKITPFLGGILGAFTIYILLRGQMFHLTEKLNMRPAFAALLLLGETILC 76

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           F++P+    +  + + + +     +    G  +   + +  G                  
Sbjct: 77  FLIPITSAIWLVINKTQNINLDPTVLLNTGQHIADLVQEKTGFDVLDR------------ 124

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                          +P+           + ++++ +I  L+F    G  +   L +L  
Sbjct: 125 ------GNLLKAASILPQIGQFLVGSISSFAVNVVVLIFILYFMLIGGRKMENYLYTLFP 178

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   ++   +  +++S  +G+ ++A+ +G+V    Y++   P  +  G +T I  +
Sbjct: 179 -FSDQNKDEVLNEINMIVKSNAIGIPLLAVIQGIVAVIGYFIFQTPDPLLFGFLTCIATI 237

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP  G  + +  ++ Y+ + G+  +A  L ++  + +  VD  +R  L      +  L T
Sbjct: 238 IPIVGTALVWVPLAAYMALNGDWVHALGLAIYALLVITNVDNLIRFILQKKLADIHPLIT 297

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            FG+V G+   G +G+  GP+L++L  +       +  +
Sbjct: 298 VFGVVIGLSLFGFMGIIFGPLLVSLFLLCIDIFKKSYLD 336


>gi|150004610|ref|YP_001299354.1| putative transmembrane protein [Bacteroides vulgatus ATCC 8482]
 gi|294776726|ref|ZP_06742190.1| putative membrane protein [Bacteroides vulgatus PC510]
 gi|149933034|gb|ABR39732.1| putative transmembrane protein [Bacteroides vulgatus ATCC 8482]
 gi|294449381|gb|EFG17917.1| putative membrane protein [Bacteroides vulgatus PC510]
          Length = 333

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 57/329 (17%), Positives = 128/329 (38%), Gaps = 20/329 (6%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I+ + L+    +  F   +L A  I             +K    +  A++  +  +  
Sbjct: 14  TIILGLGLILFIKMSPFIGGILGACTIYIMVRKQMFYLTQEKHFKKSITAILLLIEAIMC 73

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           F+VPL    +  + +++ +             +  WL                  H ++ 
Sbjct: 74  FLVPLSLAVWLLINKLQTVNVDTTGFIHTVTNLADWL------------------HTKTG 115

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
             L      ++    +P            + ++   ++  L+F    G  + + +  L  
Sbjct: 116 YDLLSAENISSIASILPAIGQFLMGSISSFAVNAFVLVFILYFMLIGGIQMEKYIYELLP 175

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  K + + +  ++RS  +G+ ++A+ +G +    Y+L  VPS +  G +T    +
Sbjct: 176 -FSDTNKKNVLKEINMIVRSNAIGIPLLAVIQGGIATLGYYLFDVPSALLFGFLTCFATV 234

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP  G  + +  ++ YL + G+  +A  L L+  + +  +D  +R  L         L T
Sbjct: 235 IPIVGTALVWFPLAAYLALSGDWTHAVGLLLYCGLIVTNIDNLIRFILQKKMADTHPLIT 294

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            FG+V G+   G +G+  GP+L+++  + 
Sbjct: 295 IFGVVIGLSLFGFMGVIFGPLLLSIFILC 323


>gi|306783812|ref|ZP_07422134.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
 gi|308331376|gb|EFP20227.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
          Length = 385

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 62/351 (17%), Positives = 128/351 (36%), Gaps = 7/351 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E  L  +  +  + +  +L   YFL+ +F  ++ A +  +   P++  F  +   ++   
Sbjct: 4   EFTLTQKRALAILTLIALLFGAYFLRNYFVLIVVAAVGAYLFTPLFKWFTKRF--NTGLS 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA--NQHGIPVPRWLSDIPGGMWAS 120
           A    +S +   +VP+  L    ++++  +V  V           +   +     G++  
Sbjct: 62  AACTLLSALAAVVVPVGALVGLAIVQIARMVDSVADWVRTTDLSTLGDKILQFVNGLFDR 121

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             +        +L+    +  +  G   +  F             S I  +        +
Sbjct: 122 VPFLHITVTADALRKAMISVAQNVGEWLLH-FLRDAAGSLAGVITSAIIFVYVFVALLVN 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  L   L         + +  ++R T  G  +IA  +G+   ++ ++AG   
Sbjct: 181 REKLRTLIGQLNL-LGEDVTDLYLQKMGSMVRGTVNGQFVIAACQGVAGAASIYIAGFHH 239

Query: 241 HVA-LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
                 ++   +++IP G  I      I ++  GNI     + LW  + +  +D  LRP 
Sbjct: 240 GFFIFAIVLTALSIIPLGGGIVTIPFGIGMIFYGNIAGGIFVLLWHLLVVTNIDNVLRPI 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           LV    +L        +  G+   G  G+ IGPVLM LI       +   K
Sbjct: 300 LVPRDARLNSALMLLSVFAGITMFGPWGIIIGPVLMILIVTTIDVYLAVYK 350


>gi|254883091|ref|ZP_05255801.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319643611|ref|ZP_07998231.1| transmembrane protein [Bacteroides sp. 3_1_40A]
 gi|254835884|gb|EET16193.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317384780|gb|EFV65739.1| transmembrane protein [Bacteroides sp. 3_1_40A]
          Length = 333

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 57/329 (17%), Positives = 128/329 (38%), Gaps = 20/329 (6%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I+ + L+    +  F   +L A  I             +K    +  A++  +  +  
Sbjct: 14  TIILGLGLILFIKMSPFMGGILGACTIYIMVRKQMFYLTQEKHFKKSITAILLLIEAIMC 73

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           F+VPL    +  + +++ +             +  WL                  H ++ 
Sbjct: 74  FLVPLSLAVWLLINKLQTVNVDTTGFIHTVTNLADWL------------------HTKTG 115

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
             L      ++    +P            + ++   ++  L+F    G  + + +  L  
Sbjct: 116 YDLLSAENISSIASILPAIGQFLMGSISSFAVNAFVLVFILYFMLIGGIQMEKYIYELLP 175

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  K + + +  ++RS  +G+ ++A+ +G +    Y+L  VPS +  G +T    +
Sbjct: 176 -FSDTNKKNVLKEINMIVRSNAIGIPLLAVIQGGIATLGYYLFDVPSALLFGFLTCFATV 234

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP  G  + +  ++ YL + G+  +A  L L+  + +  +D  +R  L         L T
Sbjct: 235 IPIVGTALVWFPLAAYLALSGDWTHAVGLLLYCGLIVTNIDNLIRFILQKKMADTHPLIT 294

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            FG+V G+   G +G+  GP+L+++  + 
Sbjct: 295 IFGVVIGLSLFGFMGVIFGPLLLSIFILC 323


>gi|120437128|ref|YP_862814.1| membrane protein, UPF0118 [Gramella forsetii KT0803]
 gi|117579278|emb|CAL67747.1| membrane protein, UPF0118 [Gramella forsetii KT0803]
          Length = 339

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 58/330 (17%), Positives = 130/330 (39%), Gaps = 21/330 (6%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
             + + VL A+ +           +++        A +         ++P+  +      
Sbjct: 30  LPYLSGVLGAVTLYVILKSWMKKLVNR-GWRPPLAASLLMAGSFVGILIPVTLIAIMLTS 88

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           ++ + V+      +    +   L++I                 +    +S +   ++  +
Sbjct: 89  KIGKAVANSERVLK---ALKDQLNNI---------------EAEIGFSISSSIDTSSITN 130

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
           ++            +  ++I  M   L++   +  S+   + +    L     + I    
Sbjct: 131 WVSSNLQNLAGGTFNAFIAIGIMYFMLYYMLTNRESLRDSMITYIP-LGKDNLRIIGEES 189

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVS 266
            ++++S  LG+ ++A+ +G++    + + GVP      VITAI +MIP  G  I      
Sbjct: 190 NQLVKSNALGIPLVALVQGIIALIGFLIFGVPDPFFWFVITAIGSMIPFIGTAIGILPAC 249

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           I L  +GN F A  L ++G + +   D  +R +++     +  L T FG++ GV   G +
Sbjct: 250 ILLFAQGNDFQAISLLIYGFVVVGSTDNIIRLYVLEKLASVHPLITLFGVIVGVPLFGFI 309

Query: 327 GLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           GL  GP+L++L  +I K        +  ++
Sbjct: 310 GLIFGPLLVSLFLLILKIYKKEYGNSHHRL 339


>gi|256838584|ref|ZP_05544094.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256739503|gb|EEU52827.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 337

 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 50/320 (15%), Positives = 120/320 (37%), Gaps = 20/320 (6%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I+ + ++  + +  F   +L A  I             K      F A++     +  
Sbjct: 17  TIILGLGVILFFKITPFLGGILGAFTIYILLRGQMFHLTEKLNMRPAFAALLLLGETILC 76

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           F++P+    +  + + + +     +    G  +   + +  G                  
Sbjct: 77  FLIPITLAIWLVINKTQNINLDPTVLLNTGQHIADLVQEKTGFDVLDR------------ 124

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                          +P+           + ++++ +I  L+F    G  +   L +L  
Sbjct: 125 ------GNLIKAASILPQIGQFLVGSISSFAVNVVVLIFILYFMLIGGRKMENYLYTLFP 178

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   ++   +  +++S  +G+ ++A+ +G+V    Y++   P  +  G +T I  +
Sbjct: 179 -FSDQNKDEVLNEINMIVKSNAIGIPLLAVIQGIVAVIGYFIFQTPDPLLFGFLTCIATI 237

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP  G  + +  ++ Y+ + G+  +A  L ++  + +  VD  +R  L      +  L T
Sbjct: 238 IPIVGTALVWVPLAAYMALNGDWVHALGLAIYALLVITNVDNLIRFILQKKLADIHPLIT 297

Query: 313 FFGLVGGVRTMGLLGLFIGP 332
            FG+V G+   G +G+  GP
Sbjct: 298 VFGVVIGLSLFGFMGIIFGP 317


>gi|262382952|ref|ZP_06076089.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|301307733|ref|ZP_07213690.1| conserved hypothetical protein [Bacteroides sp. 20_3]
 gi|262295830|gb|EEY83761.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|300834407|gb|EFK65020.1| conserved hypothetical protein [Bacteroides sp. 20_3]
          Length = 337

 Score =  142 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 50/320 (15%), Positives = 120/320 (37%), Gaps = 20/320 (6%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I+ + ++  + +  F   +L A  I             K      F A++     +  
Sbjct: 17  TIILGLGVILFFKITPFLGGILGAFTIYILLRGQMFHLTEKLNMRPAFAALLLLGETILC 76

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           F++P+    +  + + + +     +    G  +   + +  G                  
Sbjct: 77  FLIPITLAIWLVINKTQNINLDPTVLLNTGQHIADLVQEKTGFDVLDR------------ 124

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                          +P+           + ++++ +I  L+F    G  +   L +L  
Sbjct: 125 ------GNLLKAASILPQIGQFLVGSISSFAVNVVVLIFILYFMLIGGRKMENYLYTLFP 178

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   ++   +  +++S  +G+ ++A+ +G+V    Y++   P  +  G +T I  +
Sbjct: 179 -FSDQNKDEVLNEINMIVKSNAIGIPLLAVIQGIVAVIGYFIFQTPDPLLFGFLTCIATI 237

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP  G  + +  ++ Y+ + G+  +A  L ++  + +  VD  +R  L      +  L T
Sbjct: 238 IPIVGTALVWVPLAAYMALNGDWVHALGLAIYALLVITNVDNLIRFILQKKLADIHPLIT 297

Query: 313 FFGLVGGVRTMGLLGLFIGP 332
            FG+V G+   G +G+  GP
Sbjct: 298 VFGVVIGLSLFGFMGIIFGP 317


>gi|313206604|ref|YP_004045781.1| hypothetical protein Riean_1114 [Riemerella anatipestifer DSM
           15868]
 gi|312445920|gb|ADQ82275.1| protein of unknown function UPF0118 [Riemerella anatipestifer DSM
           15868]
 gi|315022099|gb|EFT35128.1| hypothetical protein RAYM_06367 [Riemerella anatipestifer RA-YM]
 gi|325335954|gb|ADZ12228.1| protein of unknown function UPF0118 [Riemerella anatipestifer
           RA-GD]
          Length = 373

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 67/342 (19%), Positives = 140/342 (40%), Gaps = 26/342 (7%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + + L+  Y L  F   +L A+ +   S       I KK       A++  ++ + + I+
Sbjct: 26  VTLFLLMAYQLAMFLPSLLGAITLYVISRKYNLYLIEKKNWKPWVSALVIMLATVVILIL 85

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
           PL FL    + ++    + +   N     +  ++                      L  +
Sbjct: 86  PLYFLIDTLIEKLGNAQAYMGRFNDFLDKIHSYI----------------------LSEI 123

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLS---IIFMIIALFFFYRDGFSISQQLDSLGE 193
               L    +D +   A +     L   L+   II     L +F      I +++ +   
Sbjct: 124 QIDILSKENLDKVKETAGQLSTTILSSTLNTVTIIVSTYFLLYFMLVKPRIFERILTNAA 183

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            L       IS  + K+I +  +G+ ++A G+GL     Y + G PS + L  +T I +M
Sbjct: 184 PLKRTNINLISEKIRKMIIANAIGIPVVAFGQGLAALVGYLIFGAPSVILLFALTTIASM 243

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP  G  + +  V+++++ +G+  +   L ++  + + ++D  LR  L+     +  L T
Sbjct: 244 IPIVGGALIYVPVALFMIAEGDTVSGVGLAIYCLVVVGLIDNVLRFTLLKKLEDIHPLNT 303

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            FG++ G+   G +GL  GP+L+++  ++ +       +   
Sbjct: 304 VFGIILGMNLFGFMGLVFGPILVSVTLLLIQIYRDEFSDEDN 345


>gi|86145809|ref|ZP_01064138.1| hypothetical membrane spanning protein [Vibrio sp. MED222]
 gi|85836508|gb|EAQ54637.1| hypothetical membrane spanning protein [Vibrio sp. MED222]
          Length = 366

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 61/343 (17%), Positives = 131/343 (38%), Gaps = 7/343 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            ++      L+ F   V+   II    +P+  +  +K   S    + + +   + L ++P
Sbjct: 23  MLVYWCFAILRPFILLVIWGAIIATALYPVAVAISNKTGMSKGKASALLSFIGVLLLLIP 82

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKIL 136
           L+ L         +L++ +             L DIP  G           S+ + + I 
Sbjct: 83  LVALSSGIYTSASDLMTGLQDGTLSLPKPKESLQDIPLVGERVYAALVHASSNIEGVFIT 142

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               LK      +       G  F+ + +S I        F  +       +  L   L 
Sbjct: 143 YADELKVFASK-MASILGSLGGGFVQFIISTIIAGA----FMSNADKCQTGVTHLVVRLT 197

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                ++ ++    +RS   G+  +A+ + ++      +AGVP+     +   ++A+I  
Sbjct: 198 DGKGVELVQLSKSTVRSVVQGVIGVAVIQSIMSAIGLVIAGVPAAALWALAVLLVAIIQL 257

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
              ++     IY+    +   A+   +W  I +   D  L+P L+     +P L    G 
Sbjct: 258 PPILALLPAIIYMFSVESTLAASLFLVWC-ILVSGSDAILKPVLLSRGSHIPMLVILLGA 316

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +GG+   G++GLF+G V+++L   +    +   ++N+++    
Sbjct: 317 LGGMAMSGIVGLFVGAVILSLSYELMMAWLGLEEKNQQETEKK 359


>gi|220904315|ref|YP_002479627.1| protein of unknown function UPF0118 [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219868614|gb|ACL48949.1| protein of unknown function UPF0118 [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 368

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 71/374 (18%), Positives = 138/374 (36%), Gaps = 39/374 (10%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK-------------- 54
           Q + R + +  +L     L      +  A  +   + P Y     K              
Sbjct: 3   QTMPRLLYLLAVLAWYLLLLPNPVTIFMAACLSCLTLPQYRKLRQKARAWRIRIERSRPD 62

Query: 55  KEESSTFLAVIA-------TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
             +    ++ +           ++   IVP+  L      +     +++     +   +P
Sbjct: 63  SRKRRLLISFVNSSPLYGYITMLIAALIVPIAVLVLLVSPQAAAGFTRLRELQANNFQLP 122

Query: 108 --------RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI 159
                   +W   +         +   L    S    +   L + G+DF+    +     
Sbjct: 123 VEWVNYIQQWRQSLTEHPRLERAFNDLLMRLDSFFDTAMGLLLSRGVDFLGGTMTVLWTS 182

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
           FL   L++IF I +            +++     H+  +  ++    + + +R   LG+ 
Sbjct: 183 FLFVSLTVIFTIYS---------RRVRKITGRIFHISQSMLRRFITAIHRALRGIMLGIV 233

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNA 278
           ++A+ +G + G A+ +AGV      G++  ++A IP  G  + +  + I L   G    A
Sbjct: 234 LVALAQGFLCGVAFAVAGVNQPAFWGLLATLVAPIPMVGTALVWLPLCISLWFTGKSMAA 293

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             L LWG + +  VD  LRP  +   IK PF      ++ G+ + G +GL  GPVL+A  
Sbjct: 294 IGLGLWGMLAVAGVDNVLRPLFLRQGIKAPFFVLIIAILCGLSSFGPVGLIAGPVLLAFA 353

Query: 339 AVIWKESIMAIKEN 352
               +E+    K N
Sbjct: 354 MQAVEEANRIYKYN 367


>gi|172040300|ref|YP_001800014.1| permease [Corynebacterium urealyticum DSM 7109]
 gi|171851604|emb|CAQ04580.1| transporter of the putative permease family [Corynebacterium
           urealyticum DSM 7109]
          Length = 551

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 58/335 (17%), Positives = 114/335 (34%), Gaps = 19/335 (5%)

Query: 16  IMFIILVSLYFLKGF------FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           ++ I L +    K F        PVL ALI+    WP+      K    +        + 
Sbjct: 161 LLIIALAAFVASKAFGKLWVGILPVLLALIVCTVLWPVVRVLREKLHFPNALAVATTIIG 220

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              L       +    + + +EL S+     +    + RWL   P  +  S+        
Sbjct: 221 FFVLIAGLFALIIPPAVDQSRELASQANAGIRT---IQRWLQGPPVNLQESQFNDALNQA 277

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              L+         N    I    +      L   +++  M++  FFF +DG      + 
Sbjct: 278 TSWLQ---------NQSGRIASEVAAGASATLSALMTLFIMLVLTFFFLKDGEKFLPMIR 328

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +       +  +      + +        +++  + + +G   +L GVP    L V+T 
Sbjct: 329 RITGRRVGWHLTEALTRCWQTLGGFIRTQALVSFIDAVFIGGGLFLMGVPLAGPLAVLTF 388

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIKLP 308
               IP         +S+ + + G  F      L   + +  ++   L P+L    + L 
Sbjct: 389 FAGFIPIVGATVAGVLSVLIALVGVGFKTAIFTLILVLAVQQLEGNVLSPWLQAKAMDLH 448

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            +     +  G    G++G F+     A+IAV+ +
Sbjct: 449 PVIVLLAVTLGGTLFGIIGAFLAVPAAAMIAVVLR 483


>gi|300775462|ref|ZP_07085324.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
 gi|300506202|gb|EFK37338.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
          Length = 359

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/354 (18%), Positives = 139/354 (39%), Gaps = 20/354 (5%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q  +  +I+ +  +  + L  F   VL A+ I             +K+   +  A    
Sbjct: 14  KQVSLLAIILVLTGLICFNLALFIPSVLGAITIYVVCRKYNFYLQEEKKWKPSLAAFALM 73

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
            + + + I+P+ F+    + ++    + +   N     +  ++ D  G    S+      
Sbjct: 74  FASLIVLILPIYFIADLIIDKLGNAQAYMAKFNIFLDKIHTYIFDKVGFDILSKE----- 128

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                          T   D + + ++       +    ++ M   L+F       + ++
Sbjct: 129 -------------NMTKLKDSVGKISTSALSGTFNTLTVVMSMYFILYFMLEK-PRLFER 174

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + S    L  A    I   + K+I +  +G+ ++A+G+G+V    Y + G P  V L  +
Sbjct: 175 ILSNAAPLKRANISLIGDKMRKLIMANAIGIPVVAVGQGIVSLIGYIIFGAPGPVLLFAL 234

Query: 248 TAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           TA  ++IP  G  I +  V I+++ +GN      L  +  + + + D  LR  L+     
Sbjct: 235 TAASSVIPVVGTAIVYVPVCIFMIAEGNTGPGLGLAAYCVVVVGLTDNLLRFTLLKKLEN 294

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           +  L T FG++ G+   G +GL  GP+L++L  ++ +       + +       
Sbjct: 295 IHPLNTVFGIIMGMNLFGFMGLIFGPILISLTLLLIQVYRNEFSDEETPPDLEL 348


>gi|150009736|ref|YP_001304479.1| hypothetical protein BDI_3151 [Parabacteroides distasonis ATCC
           8503]
 gi|255012973|ref|ZP_05285099.1| hypothetical protein B2_03653 [Bacteroides sp. 2_1_7]
 gi|149938160|gb|ABR44857.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
          Length = 337

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/320 (15%), Positives = 122/320 (38%), Gaps = 20/320 (6%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I+ + ++  + +  F   +L A  I             K      F A++     +  
Sbjct: 17  TIILGLGVILFFKITPFLGGILGAFTIYILLRGQMFHLTEKLNMRPAFAALLLLGETILC 76

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           F++P+    +  + + + +     +    G  +   + +  G           ++     
Sbjct: 77  FLIPITLAIWLVINKTQNINLDPTVLLNTGQHIADLVQEKTGFDVLDRGNLLKVA----- 131

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                          +P+           + ++++ +I  L+F    G  +   L +L  
Sbjct: 132 -------------SILPQIGQFLVGSISSFAVNVVVLIFILYFMLIGGRKMENYLYTLFP 178

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   ++   +  +++S  +G+ ++A+ +G+V    Y++   P  +  G +T I  +
Sbjct: 179 -FSDQNKDEVLNEINMIVKSNAIGIPLLAVIQGIVAVIGYFIFQTPDPLLFGFLTCIATI 237

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP  G  + +  ++ Y+ + G+  +A  L ++  + +  VD  +R  L      +  L T
Sbjct: 238 IPIVGTALVWVPLAAYMALNGDWVHALGLAIYALLVITNVDNLIRFILQKKLADIHPLIT 297

Query: 313 FFGLVGGVRTMGLLGLFIGP 332
            FG+V G+   G +G+  GP
Sbjct: 298 VFGVVIGLSLFGFMGIIFGP 317


>gi|84385148|ref|ZP_00988180.1| hypothetical membrane spanning protein [Vibrio splendidus 12B01]
 gi|84379745|gb|EAP96596.1| hypothetical membrane spanning protein [Vibrio splendidus 12B01]
          Length = 366

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/343 (17%), Positives = 131/343 (38%), Gaps = 7/343 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            ++      L+ F   V+   II    +P+  +  +K   S    + + +   + L ++P
Sbjct: 23  MLVYWCFSILRPFILLVIWGAIIATALYPVAVAISNKTGMSKGKASALLSFIGVLLLLIP 82

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKIL 136
           L+ L         +L++ +             L DIP  G           S+ + + I 
Sbjct: 83  LVALSSGIYTSASDLMTGLQDGTLSLPKPKESLQDIPLVGERVYAALVHASSNIEGVFIT 142

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               LK      +       G  F+ + +S I        F  +       +  L   L 
Sbjct: 143 YADELKVFASK-MASILGSLGGGFVQFIISTIIAGA----FMSNADKCQTGVTHLVVRLT 197

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                ++ ++    +RS   G+  +A+ + ++      +AGVP+     +   ++A+I  
Sbjct: 198 DGKGVELVQLSKSTVRSVVQGVIGVAVIQSIMSAIGLVIAGVPAAALWALAVLLVAIIQL 257

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
              ++     IY+    +   A+   +W  I +   D  L+P L+     +P L    G 
Sbjct: 258 PPILALLPAIIYMFSVESTLAASLFLVWC-ILVSGSDAILKPVLLSRGSHIPMLVILLGA 316

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +GG+   G++GLF+G V+++L   +    +   ++N+++    
Sbjct: 317 LGGMAMSGIVGLFVGAVILSLSYELMMAWLGLEEKNQQETEKK 359


>gi|198276942|ref|ZP_03209473.1| hypothetical protein BACPLE_03147 [Bacteroides plebeius DSM 17135]
 gi|198270467|gb|EDY94737.1| hypothetical protein BACPLE_03147 [Bacteroides plebeius DSM 17135]
          Length = 338

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 64/326 (19%), Positives = 127/326 (38%), Gaps = 33/326 (10%)

Query: 15  MIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +I+FI+ +     +    F   +L    +      +     +K          + T+ V 
Sbjct: 10  LIVFILGLGYLLFRQAQPFLNGILGGFTLYLLLRNVTFWLQTKM--KPALAVWLVTIGVT 67

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              ++PL    +  + ++ ++        +    V  ++ D  G    SE          
Sbjct: 68  LFILIPLSLFGWALVSQVSKMHFDTEAIIRPAWHVIDFIKDRTGFDILSE---------- 117

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFL----DYCLSIIFMIIALFFFYRDGFSISQQ 187
                         + F    AS  G   +    D  +++   I+ LFF   +G S+   
Sbjct: 118 ------------KSLSFFVSQASSIGQSVMSGVSDLLVNLCVAIMLLFFMLYEGKSMEHY 165

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + +L          ++ + V  ++RS  +G+ ++AI +G +    Y +   P+     ++
Sbjct: 166 VSTLLP-FKAENKIEVLKKVQLMVRSNAIGIPLLAIIQGFISLGGYLICDAPNPFLSAML 224

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           TA  ++IP  G  + +  ++IY LI G+  NA  +  +GAI +   D  +R  L      
Sbjct: 225 TAFASVIPLVGTALVWVPITIYFLIVGSWVNALMMLGYGAIIVSQCDNLIRFLLQKKMAD 284

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGP 332
           +  L T FG+V G+   G +G+  GP
Sbjct: 285 VHPLITIFGVVAGLPLFGFMGVIFGP 310


>gi|68536533|ref|YP_251238.1| hypothetical protein jk1447 [Corynebacterium jeikeium K411]
 gi|68264132|emb|CAI37620.1| putative membrane protein [Corynebacterium jeikeium K411]
          Length = 608

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/340 (17%), Positives = 125/340 (36%), Gaps = 24/340 (7%)

Query: 14  WMIMFIILVSLYFLKGF---------FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           W + FII+ +  +L GF           PV  ++I+    WP+    + K +  ++   +
Sbjct: 174 WCLRFIIIAAALYL-GFQVFGKLWAGILPVCLSVIVCTVLWPV-VRLLRKAKIPNSLAVL 231

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           I+ +    L I     +    + + K +V++          +  WL   P  +  S+   
Sbjct: 232 ISILGFFALIIGTFAAIAPSAVDQGKTIVNQASDGIGR---IQDWLQGPPVNLQESQF-- 286

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                          +L+    D I    + FG       +++  M++  FFF +DG + 
Sbjct: 287 ------NDGVQQITDWLQNKSGD-IATSIAAFGTETASLLVTLFVMLVLTFFFLKDGENF 339

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              L  +       +  ++       +        I++  + + +G    L  VP    L
Sbjct: 340 LPMLRRVTGRRVGWHLTEVLTRCWNTLGGFIRTQAIVSAIDAIFIGLGLVLLNVPLAGPL 399

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGG 303
            ++T     IP        A+S+ + +    FN   + L   + +  ++   L+P L   
Sbjct: 400 AILTFFGGFIPMVGAFVAGALSVLIALVAVDFNTAVMALLLVVAVQQLEGNILQPVLQSR 459

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            + +  +     +  G    G++G F+     A+IAVI +
Sbjct: 460 AMNVHPVIILLSVTLGSTLFGIIGAFLAVPCAAMIAVILR 499


>gi|300870109|ref|YP_003784980.1| hypothetical protein BP951000_0476 [Brachyspira pilosicoli 95/1000]
 gi|300687808|gb|ADK30479.1| putative exported protein [Brachyspira pilosicoli 95/1000]
          Length = 394

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 76/352 (21%), Positives = 149/352 (42%), Gaps = 22/352 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES--------ST 60
           Q      I   I +    LK F   +  AL+      P++   I K              
Sbjct: 8   QIFFITFIFLSIFIMYQLLKPFGMVIFFALVFYVVLSPLFKKAIGKSYGKEDKISMIKRH 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL----VSKVVLANQHGIPVPRWLSDIPGG 116
            LA++ +++ + +F+VP   L Y  ++++ ++    +   +  + + I     L ++   
Sbjct: 68  TLALLFSLTSLIIFLVPTSLLLYTIIVQLIDISNIGIKYFMNLDFNSILNNDRLRELLSM 127

Query: 117 MWASELWTKHLSHPQSLKILSETFLK--TNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
           +         +S  + L+ + ++ L   T+   ++ +  +        +  S IFM+ +L
Sbjct: 128 LPVE------ISAAEILRRIQDSLLSNLTSVSSYLTQNVAGILKGTGKFVSSFIFMMFSL 181

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           FFF+ DG  + +Q+ SL   +   Y  ++ +   + IR    G     I +G+     Y 
Sbjct: 182 FFFFVDGEYLKEQVSSLIP-IEKKYLDRLFKQASEGIRGIIFGNLFTGIFQGICAFIVYS 240

Query: 235 LAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
           + GV + +   ++T I + +P  G  I +  + +  +I G I  A    +     + I D
Sbjct: 241 IFGVTNSLTFALLTIIASFMPIIGTTIIWIPLGVLFIINGEILRAIIFLVVSWFFITIPD 300

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             +RP L+G  I+L  L  FF ++GGV   GL G+ +GP+   L   I +  
Sbjct: 301 NFVRPLLLGNRIELHPLFIFFAILGGVLFFGLSGIILGPLTFILFFEIMRMY 352


>gi|189462559|ref|ZP_03011344.1| hypothetical protein BACCOP_03249 [Bacteroides coprocola DSM 17136]
 gi|189430720|gb|EDU99704.1| hypothetical protein BACCOP_03249 [Bacteroides coprocola DSM 17136]
          Length = 338

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 58/310 (18%), Positives = 118/310 (38%), Gaps = 30/310 (9%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           + F   +L    +        +   +K          + T+ V    ++P+    +  + 
Sbjct: 26  QPFMNGILGGFTLYILLRNFSNWLQTKI--KPLLAVWMITIGVTLFILIPVSLFSWAIVS 83

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           ++  +        Q    V   + +  G    SE                        + 
Sbjct: 84  QISGMHFDTQAIIQPAHQVIDIIEERTGFDLLSE----------------------KSLS 121

Query: 148 FIPRFASRFGMIFL----DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           F+   AS  G   +    D  +++   I+ +FF   +G  +   + ++      +  +++
Sbjct: 122 FMVVQASSIGQKIMTGVSDLIVNLAVAIMLMFFMLWEGRKMEHYVSTIMP-FEESNKREV 180

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISF 262
              +  ++RS  +G+ ++A+ +G++    Y L   P+     ++TA  ++IP  G  + +
Sbjct: 181 LNKIQLMVRSNAIGIPLLAVIQGIISLGGYLLCDAPNPYLTALLTAFASIIPLVGTALIW 240

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             VSIY LI G   NA  L  +G I +   D  +R  L      +  L T FG+V G+  
Sbjct: 241 IPVSIYFLIMGEWINALILLGYGGIIISQCDNLIRFLLQKKMANIHPLITIFGVVAGLPI 300

Query: 323 MGLLGLFIGP 332
            G +G+  GP
Sbjct: 301 FGFMGIIFGP 310


>gi|198283230|ref|YP_002219551.1| hypothetical protein Lferr_1102 [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218666938|ref|YP_002425462.1| hypothetical protein AFE_0988 [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198247751|gb|ACH83344.1| protein of unknown function UPF0118 [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519151|gb|ACK79737.1| membrane protein, putative [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 346

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 71/341 (20%), Positives = 140/341 (41%), Gaps = 12/341 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           ++++ +   + Y L  F  P+L   ++    WP                +++  +  + +
Sbjct: 17  FVLLLVYAGAAYTLSPFAGPLLMGAVLTTVGWPWQLRLERAFHMPRWLGSLVHALVWVAI 76

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            I+P + +    + ++  L+S+        +  P  +     G W        LSH + L
Sbjct: 77  IIIPAVIIVDSVLPQLALLISRWQSGGPLVVVPPEVMKIPYVGHWL-------LSHLRGL 129

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                + L +     I    S+  +  L       F  + +F     G  +++ L     
Sbjct: 130 NGAYLSALVSTHSGIITDSLSQLWIFTLH----TFFAALTVFALALHGERLTEALRLGAG 185

Query: 194 HLFP-AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            ++      ++        RS  +G+  + + EG+ +G AY +AG+       V TA+++
Sbjct: 186 QIWGSDRGDRLLAASRDAARSVLIGLIGVGVVEGMFIGIAYAVAGLGMWPLWLVATALIS 245

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
            IP GA     A +++L   G+ F    + +WG I +   D  +RP L G   + PF   
Sbjct: 246 PIPFGATAVVGAATLWLAFTGHWFAGLLVLIWGLIVITAADLVVRPLLTGSQTQAPFFLV 305

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           FF ++GG    GL+GL IGP+L+ L   +W+     ++  +
Sbjct: 306 FFSILGGAEAFGLIGLIIGPILVLLARGVWRAWERRVRLQE 346


>gi|222480361|ref|YP_002566598.1| protein of unknown function UPF0118 [Halorubrum lacusprofundi ATCC
           49239]
 gi|222453263|gb|ACM57528.1| protein of unknown function UPF0118 [Halorubrum lacusprofundi ATCC
           49239]
          Length = 346

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/356 (17%), Positives = 139/356 (39%), Gaps = 32/356 (8%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST---- 60
           M   Q  +  +I  + L++L+ ++ F   V+++ I+ +  +P +       +E  +    
Sbjct: 1   MNRGQSFLLLLIGSVALLTLFVIRPFIEYVIASAILAYVLFPFHVRLSRGLQEGLSNRFR 60

Query: 61  ----------FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
                       A+   VS +   I+PL ++ +  + ++ E+       +   I      
Sbjct: 61  ESLARQLGYMLSALFLIVSSIVAVILPLAYISWVFVRDLTEIARGNSDIDVEAI------ 114

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
                     E     L+  Q       T +     + +           L   + +   
Sbjct: 115 ----------ETELAALTGEQIEVGEVLTTVGQVLANTLFGGLGGIVTTALRASVGLSLA 164

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           +  +++   DG +  + L      L       +   V  + R   +G  ++A+ + LV G
Sbjct: 165 LFLVYYTLLDGPAFVRWLRQTSP-LPADVTSDLVDRVDAMTRGVVIGHIVVALLQALVAG 223

Query: 231 SAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
              W AG+P+ V    + A++A++P  GA   +   + YL+    +     L ++G + +
Sbjct: 224 LGLWAAGIPNVVFWTFVMAVLALVPLVGAFFVWGPAAAYLVAIDQVTAGVFLAIYGVLVI 283

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            +VD   RP ++     L       G+ GG+ ++G  GLF+GP+++ ++A   +  
Sbjct: 284 AMVDNYARPIVIDQQAHLNPAVILLGVFGGIYSIGFTGLFVGPIVIGVLAATLETF 339


>gi|260577670|ref|ZP_05845606.1| membrane protein [Corynebacterium jeikeium ATCC 43734]
 gi|258604216|gb|EEW17457.1| membrane protein [Corynebacterium jeikeium ATCC 43734]
          Length = 605

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 61/340 (17%), Positives = 125/340 (36%), Gaps = 24/340 (7%)

Query: 14  WMIMFIILVSLYFLKGF---------FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           W + FII+ +  +L GF           PV  ++I+    WP+    + K +  ++   +
Sbjct: 171 WCLRFIIIAAALYL-GFQVFGKLWAGILPVCLSVIVCTVLWPV-VRLLRKLKIPNSLAVL 228

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           I+ +    L I     +    + + K +V++          +  WL   P  +  S+   
Sbjct: 229 ISILGFFALIIGTFAAIAPSAVDQGKTIVNQASDGIGR---IQDWLQGPPVNLQESQF-- 283

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                          +L+    D I    + FG       +++  M++  FFF +DG S 
Sbjct: 284 ------NDGVQQITDWLQNKSGD-IATSIAAFGTETASLLVTLFVMLVLTFFFLKDGESF 336

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              L  +       +  ++       +        I++  + + +G    L  VP    L
Sbjct: 337 LPMLRRVTGRRVGWHLTEVLTRCWNTLGGFIRTQAIVSAIDAIFIGLGLVLLNVPLAGPL 396

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGG 303
            ++T     IP        A+S+ + +    FN   + L   + +  ++   L+P L   
Sbjct: 397 AILTFFGGFIPMVGAFVAGALSVLIALVAVDFNTAVMALLLVVAVQQLEGNILQPVLQSR 456

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            + +  +     +  G    G++G F+     A+IAVI +
Sbjct: 457 AMNVHPVIILLSVTLGSTLFGIIGAFLAVPCAAMIAVILR 496


>gi|256419838|ref|YP_003120491.1| hypothetical protein Cpin_0792 [Chitinophaga pinensis DSM 2588]
 gi|256034746|gb|ACU58290.1| protein of unknown function UPF0118 [Chitinophaga pinensis DSM
           2588]
          Length = 344

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 62/358 (17%), Positives = 130/358 (36%), Gaps = 24/358 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFL----KGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           ++++ + I +   + IIL+  Y L      FF   L A+ +   S       + K+    
Sbjct: 2   SVIDNERIKQVSFLLIILLLAYVLFKELYTFFPGFLGAVTMYILSRKFMFRLVEKRNWKK 61

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
           +  A +  V    + ++P   L      ++   VS           +   + +       
Sbjct: 62  SAAAALLMVLSFIIVLLPFGMLINMLTDKIGYAVSHSQEMVAGIEKLNVRIKESTNFDVL 121

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           S++  + L                    ++            +   +I  +   L+F   
Sbjct: 122 SQVKLERLQ------------------GYLTSVLPTLLGATFNTLTAIAILYFILYFMLV 163

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           +   +   L      L      ++     K++ +  +G+  IA+ +G+V    Y++  VP
Sbjct: 164 NAREMEAWLYEYIP-LKDENVLRLGTEFHKLVIANAVGIPAIALIQGVVSLIGYFIFQVP 222

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             V    +T   AM+P  GA   +  + +YLL  G  +    + ++G   +   D   R 
Sbjct: 223 QPVFWFAVTCFTAMLPVVGAAAVYVPMGLYLLGTGMTWQGIGVLVYGFAVVGTSDNIFRF 282

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            L      +  L T FG++ GV   G +GL  GP+L+++  ++ +         K ++
Sbjct: 283 VLAKRIGDVHPLITVFGVLIGVNLFGFIGLIFGPLLISMFILLLEIYSNEFFTKKREV 340


>gi|153003656|ref|YP_001377981.1| hypothetical protein Anae109_0785 [Anaeromyxobacter sp. Fw109-5]
 gi|152027229|gb|ABS24997.1| protein of unknown function UPF0118 [Anaeromyxobacter sp. Fw109-5]
          Length = 363

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 67/338 (19%), Positives = 127/338 (37%), Gaps = 7/338 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           M++  + ++   +  F+     A ++  T          K        A   T++V+   
Sbjct: 14  MLVVALALTAALVWPFWVAFFLAAVLSATLRRPMEWLARKLRGRREIAAAALTIAVLLAV 73

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           ++PL  +    + E+ + V  +         +   L+ +P  +  +             +
Sbjct: 74  VLPLAAIGTLIVGEVLDGVQFLRKLFASEG-IGGILARLPDPLEQAARKVVAAIPEPQQQ 132

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           I             +    S  G         ++ M+IALFF   DG  +   LD     
Sbjct: 133 IKQIAQQGQQAAGVVATVISATGSAVFQ----VVMMLIALFFMLVDGSRLVGWLDRHVP- 187

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L P   +++     K   S        A  +       Y +A  P+ V   + T ++A++
Sbjct: 188 LRPGLLRELIEDFSKTSVSVLTATLATAGIQTATALVGYLIARAPNLVFFTLATFVVALV 247

Query: 255 PG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P  G       V + LL  G++   T L  WGA  + ++D   RP+L+ G ++L     F
Sbjct: 248 PALGGAFMVVGVGLLLLATGHVLAGTFLVAWGAAVVSLIDNVARPYLLKGGMELHGGIVF 307

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           F L+GG+ T G +GL +GP+++  +  + K        
Sbjct: 308 FALIGGLATFGGIGLVLGPLIVTFLLAVLKMYEREYGR 345


>gi|269793324|ref|YP_003318228.1| hypothetical protein Taci_1732 [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269100959|gb|ACZ19946.1| protein of unknown function UPF0118 [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 355

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 63/340 (18%), Positives = 131/340 (38%), Gaps = 12/340 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           MR  M  PQ  +   ++ + L S   ++    P+    ++ F           +      
Sbjct: 1   MRRDM-APQWAVGAFVLVLALWSYPVVRSMLEPLGMGAVMAFALSGPKRRLCRR-ANRPA 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A + T+  +   ++P  +  Y   +E++ + S+ +     G      L+D     +  
Sbjct: 59  LWASLLTLGFLFSIVIPTAYGVYALGMEVRGIASQGLQGLVRGDMDVAQLADALKARYG- 117

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL----SIIFMIIALFF 176
            L T   S    L + S   L  +G+ ++ R         +        +I+        
Sbjct: 118 HLVTHLPSEFGGLDLWS---LGADGLIWLARQGLSMSGNLIGGITRATYTILLSCFFGLL 174

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
             +D  ++ + L      L     +       +V+R+  +G  +  + +G +    +W +
Sbjct: 175 ILKDWEALVRALGRTIP-LGGWRARAFLLRSGRVMRAVIVGSVLTGLVQGGLGALGWWFS 233

Query: 237 GVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
           G+P+    G+     + IP  G  + +   + YL + G+I     L  WGA+ +  +D  
Sbjct: 234 GLPNWATAGLGMFACSFIPVVGTALVWLPGAAYLALTGSIKGGLILAAWGALVVSSIDHL 293

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
           +RP  +    +   L    G++GG+   G+ GLF+GPV +
Sbjct: 294 VRPLFMSSGEEASTLLMMVGVLGGLAAWGVPGLFMGPVAL 333


>gi|55380329|ref|YP_138178.1| hypothetical protein rrnB0307 [Haloarcula marismortui ATCC 43049]
 gi|55233054|gb|AAV48472.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 318

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 58/319 (18%), Positives = 116/319 (36%), Gaps = 18/319 (5%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            ++ F   +L A+++ +  +P+     +    S    A+      +  F+ P++ +    
Sbjct: 2   LIRPFLQYILGAVLLAYVLYPLQIRLETYV--SPMLAALSLVTLAVTGFVAPVVVVLASI 59

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           M     ++ +                  P  +   E   K L+  +            + 
Sbjct: 60  MESADRILREFGTD--------------PVQLDILESRIKGLTGVEVDIAGELVSSGRDI 105

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              I   +++       + + I   +  +++  +DG  +   L      L     +    
Sbjct: 106 GTIIVERSTQAFSTITFHLIGIALALFLIYYLLKDGDDLVDWLHRTVP-LPVDVQRDFYA 164

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTA 264
            +  V+     G   +AI +G+V G      GVP+ +    +  ++AM+P  G    +  
Sbjct: 165 EIDDVMLGVLFGHVFVAIVQGIVAGVGLAATGVPNAMFWTAVMVVLAMVPLIGTIPVWGG 224

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             IYL        A  LFL+  I + + D  LRPF V    KL       G++GG    G
Sbjct: 225 AVIYLYATDEPLLAVGLFLYSVIIVGLTDDYLRPFAVDRYAKLNPAVILLGILGGAYAFG 284

Query: 325 LLGLFIGPVLMALIAVIWK 343
           ++GL  GPV++  +    +
Sbjct: 285 VMGLLFGPVVLGALKAALR 303


>gi|89890618|ref|ZP_01202128.1| conserved hypothetical transmembrane protein [Flavobacteria
           bacterium BBFL7]
 gi|89517533|gb|EAS20190.1| conserved hypothetical transmembrane protein [Flavobacteria
           bacterium BBFL7]
          Length = 340

 Score =  139 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 65/331 (19%), Positives = 120/331 (36%), Gaps = 21/331 (6%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  +   +L A+ +     PI     SK     +  +         + ++P++ +     
Sbjct: 30  LAPYLGGLLGAITLYVLLEPIQKWLESK-NWKPSVASSFLIALSFVIILLPIVGIGLM-- 86

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
                + SKV  A  +   +   +                 +       +SE        
Sbjct: 87  -----MSSKVKTAIDNSTQITETIKS-----------KVAETENLIGVSVSENINTEEVS 130

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
            ++           L   +SI  M   L+F   D     +        L     K I + 
Sbjct: 131 SWVSSNVQNLANSSLTVSISIGIMFFLLYFMLVDRKKWLEAALIYMP-LKEKNLKIIGKE 189

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAV 265
              +++S  +G+ ++A+ +G+V    Y++ GV +     VIT I +MIP  G  +    V
Sbjct: 190 SIDLVKSNAIGIPLVALLQGIVALIGYFIFGVENPFFWFVITVIGSMIPFVGTALGILPV 249

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +I L  +G    A  + ++G I +   D   R  +      +  L T  G+V GV   G 
Sbjct: 250 TILLFSQGETAAAIGILIYGVIVVGSTDNLFRLVVQKRLADVHPLVTLIGVVVGVPLFGF 309

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           +GL  GP+L++L  ++ K       +  E I
Sbjct: 310 IGLIFGPLLVSLFLLLLKIYKNEYGKEGETI 340


>gi|91215955|ref|ZP_01252924.1| putative transmembrane protein [Psychroflexus torquis ATCC 700755]
 gi|91185932|gb|EAS72306.1| putative transmembrane protein [Psychroflexus torquis ATCC 700755]
          Length = 354

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 60/310 (19%), Positives = 123/310 (39%), Gaps = 27/310 (8%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  + + +L A+        +    + K   + TF   +  V+   L +VP+L +     
Sbjct: 29  LLPYISGILGAITFYVLLRGLMRWMLHK-GWNPTFSVTVLMVASFILILVPVLGIILMLS 87

Query: 87  LEMKELVSK---VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
            ++   +     V+ A +  +     +S I  G                          T
Sbjct: 88  SKVSSAIQNSEKVIEAAKAQLVQIETMSGINLGEKIDS---------------------T 126

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
              D++            +  ++I  M   L++   +   ++  +++    +     K I
Sbjct: 127 AVTDWLSNNLQGLAGGTFEVFIAISIMYFLLYYMLLNQKKLTISMETYIP-IDVENLKLI 185

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISF 262
           ++   K +++  +G+ ++A+ +G++    YW+ GVP  +   VIT I +MIP  G  I F
Sbjct: 186 AKESAKKVKANAIGIPLVALFQGIISLIGYWIFGVPEAMFWFVITTIGSMIPFVGTAIGF 245

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             V++ L  +G   +A  + L+G + +   D  +R  ++        L T  G++ GV  
Sbjct: 246 IPVTLLLYYQGETASAIGVLLYGFVIVGSSDNIVRLLVLKKMANEHPLITLIGVIIGVPL 305

Query: 323 MGLLGLFIGP 332
            G +GL  GP
Sbjct: 306 FGFIGLIFGP 315


>gi|298209214|ref|YP_003717393.1| putative transmembrane protein [Croceibacter atlanticus HTCC2559]
 gi|83849141|gb|EAP87010.1| putative transmembrane protein [Croceibacter atlanticus HTCC2559]
          Length = 339

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 59/330 (17%), Positives = 130/330 (39%), Gaps = 23/330 (6%)

Query: 31  FAPVLSALIIGFTSWPIYSSF---ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
             P L  ++   T + +   +   + +K  +    + +  +      +VP+  +      
Sbjct: 29  IIPYLGGVLGAITFYVLLRKWMVILLRKGWNENLASGLLMLGSFVGILVPISLIIIMLTS 88

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           ++ + V       +                   + W   + +  S +I +          
Sbjct: 89  KIGKAVDNSERVIE-------------AVKTQVDKWELSVGYDLSSQIDTGKI-----AS 130

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
           ++            D  ++I  +   L++   +   + + LD     +       I +  
Sbjct: 131 WVGDNLKNLAGGTFDAFIAIGILYFMLYYMLTNRSQLREALDEYIP-IGHDNLILIGKES 189

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVS 266
             ++R+  +G+ ++AI +G++    + + GVP      VIT I +MIP  G  I    V+
Sbjct: 190 SDLVRANAIGIPLVAICQGIIALIGFLIFGVPDPFFWFVITTIGSMIPFIGTAIGIIPVT 249

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           I L  +G  + A  +F++G + +   D  +R +++     +  L T FG+V GV   G +
Sbjct: 250 ILLYAQGMHWQAIAIFIYGMVVVGATDNFIRLYMLQKLSNVHPLITLFGVVVGVPLFGFI 309

Query: 327 GLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           GL  GP+L++L  +I K       +N+ ++
Sbjct: 310 GLIFGPLLISLFLLIVKIYKNEYGKNEARL 339


>gi|46579600|ref|YP_010408.1| hypothetical protein DVU1189 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120602912|ref|YP_967312.1| hypothetical protein Dvul_1868 [Desulfovibrio vulgaris DP4]
 gi|46449015|gb|AAS95667.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120563141|gb|ABM28885.1| protein of unknown function UPF0118 [Desulfovibrio vulgaris DP4]
          Length = 399

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 66/328 (20%), Positives = 137/328 (41%), Gaps = 6/328 (1%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +  F   ++ + +   + +P Y    S   E     A++    V+ L ++P++      +
Sbjct: 47  VAPFLHTIILSSVFSASIYPFYRRLTSYLGERPVPAALLVLAGVVILVVIPVVVFVIGLI 106

Query: 87  LEMKELVSKVV--LANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            +    VS +   LA   G+      +  P   W  E           ++       +  
Sbjct: 107 PQAVASVSAITRWLAGHGGLDGLNDAALAPYIAWVRENLPFIDPAQLDVRSSLVQASRAA 166

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
           G   + ++ +      L      + +++ +FF  +DG  + Q++  L   L      +I 
Sbjct: 167 G-QTLLQWGTYVLGNTLLLFGHFLLLLLCMFFMLKDGAWMVQRVRYLSP-LRIDQQDRII 224

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFT 263
             + +V RS  +G  ++A+ +GL+ G A    G+P  +  G + A  +++P  G  + + 
Sbjct: 225 LELRRVGRSVLVGGLLVAVIQGLLGGVALAAVGIP-ALFWGTLMAFASLVPVVGTGLVWV 283

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
               YLL+     +A  L LW  I +   D  LRP+ + G + +P    F  ++GGV+  
Sbjct: 284 PAVCYLLLTSQWESALFLSLWCGIVVVGADSILRPYFMRGGVGMPVFFIFLSILGGVKAF 343

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKE 351
           G+LG+  GP++++   V+        ++
Sbjct: 344 GMLGILDGPLILSFTVVMLSLYGDEYRD 371


>gi|120405597|ref|YP_955426.1| hypothetical protein Mvan_4645 [Mycobacterium vanbaalenii PYR-1]
 gi|119958415|gb|ABM15420.1| protein of unknown function UPF0118 [Mycobacterium vanbaalenii
           PYR-1]
          Length = 396

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 61/355 (17%), Positives = 140/355 (39%), Gaps = 7/355 (1%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
            +  L  +  +  + +  +  + YFL+ +   +  + ++ +   P+ +  +++    S  
Sbjct: 3   DDFTLTQKRALAVLTVIALAFAAYFLRTYLLLIAISAVLAYLFTPLNNRLLTRMG--SGA 60

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA--NQHGIPVPRWLSDIPGGMWA 119
            A +  ++ +    +PL  + +   L++ ++V+ +           + + L D    + A
Sbjct: 61  AATVTLLAAIATVALPLSGVAFLAFLQISQMVTGISQWVERTDFTALGQRLLDSANQLLA 120

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              +      P+S++    T  +  G +F   FA       +    ++I  I        
Sbjct: 121 RIPFIDTTLTPESVRDALATIGQKAG-EFALGFARDSVGGIVAMVTALILFIYVFLALLT 179

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           +G  +      L   L           V  ++ +T  G  IIA+ +G+    + ++ G+ 
Sbjct: 180 NGTKVLDLFRDLNP-LGQQVSDIYLAKVGAMVSATVKGQFIIAVCQGVAGAVSVYIGGIH 238

Query: 240 SHVALGVI-TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
               + VI   +++ IP G  I    + + + + GN      + ++  I +  +D  LRP
Sbjct: 239 DGFFMFVIFLTVLSFIPLGGGIVTIPLGVGMAVFGNPVGGIFVIVFHIIVVTNIDNLLRP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           FLV     L        +  G++  G +G+ +GPVLM +I       ++  K+  
Sbjct: 299 FLVPKSAHLHPALMLLAVFAGLQMFGFIGIVLGPVLMIVIVTTISVYLVVYKDAP 353


>gi|42525852|ref|NP_970950.1| hypothetical protein TDE0336 [Treponema denticola ATCC 35405]
 gi|41815902|gb|AAS10831.1| membrane protein, putative [Treponema denticola ATCC 35405]
          Length = 372

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 68/355 (19%), Positives = 138/355 (38%), Gaps = 10/355 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE-------SSTFLAVIA 66
            ++  ++++       + + +L + +I     P+Y+  +S+  +           LA   
Sbjct: 16  VLLAGMLILVGKLFLPYASVLLWSAVIYVLVRPLYNKILSRMNKEKKTFPIKKRLLAGSF 75

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +  + +    L F+      + K LV  +    ++        S        + L    
Sbjct: 76  AIITVLVVAGVLFFVVIKIFGQGKILVQNIQSFLENINNSESGFSKTDIAAIVNRLSMGT 135

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +             L ++  D I R+A+        + LS++F   AL+FFY DG  +  
Sbjct: 136 VDISNLDLQKEFLNLLSSSSDKILRYATSLVKNAGSFFLSLVFFAFALYFFYVDGAYLFS 195

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L      +      K+   + ++  + F G+ +++  + L     Y + GV S + L +
Sbjct: 196 LLKHAIP-IDNETSDKLFSKIGEITTNLFKGLFLVSFYQCLASFIVYLIFGVQSALLLAI 254

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +T     +P  G  + +  V + L     +       +     +  +D  LRPF +   I
Sbjct: 255 LTFFSTFLPIVGCGLIWFPVGVGLCFTDGLVKGLIFLVVAGSIISFMDNFLRPFFLKDRI 314

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           K+  L  FF ++GGV      G+ +GP+++ L   I   ++  I+E KE    NF
Sbjct: 315 KIHPLLIFFSMLGGVSMFSFDGIILGPMIVILFFTILDMAL-DIEEKKENDEDNF 368


>gi|325475471|gb|EGC78652.1| membrane protein [Treponema denticola F0402]
          Length = 372

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 68/355 (19%), Positives = 138/355 (38%), Gaps = 10/355 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE-------SSTFLAVIA 66
            ++  ++++       + + +L + +I     P+Y+  +S+  +           LA   
Sbjct: 16  VLLAGMLILVGKLFLPYASVLLWSAVIYVLVRPLYNKILSRMNKEKKTFPIKKRLLAGSF 75

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +  + +    L F+      + K LV  +    ++        S        + L    
Sbjct: 76  AIITVLVVAGVLFFVVIKIFGQGKILVQNIQSFLENINNSESGFSKTDIAAIVNRLSMGT 135

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +             L ++  D I R+A+        + LS++F   AL+FFY DG  +  
Sbjct: 136 VDISNLDLQKEFLNLLSSSSDKILRYATSLVKNAGSFFLSLVFFAFALYFFYVDGAYLFS 195

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L      +      K+   + ++  + F G+ +++  + L     Y + GV S + L +
Sbjct: 196 LLKHAIP-IDNETSDKLFSKIGEITTNLFKGLFLVSFYQCLASFIVYLIFGVQSALLLAI 254

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +T     +P  G  + +  V + L     +       +     +  +D  LRPF +   I
Sbjct: 255 LTFFSTFLPLVGCGLIWFPVGVGLCFTDGLAKGLIFLVVAGSIISFMDNFLRPFFLKDRI 314

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           K+  L  FF ++GGV      G+ +GP+++ L   I   ++  I+E KE    NF
Sbjct: 315 KIHPLLIFFSMLGGVSMFSFDGIILGPMIVILFFTILDMAL-DIEEKKENDEDNF 368


>gi|311233404|gb|ADP86258.1| protein of unknown function UPF0118 [Desulfovibrio vulgaris RCH1]
          Length = 389

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 66/328 (20%), Positives = 137/328 (41%), Gaps = 6/328 (1%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +  F   ++ + +   + +P Y    S   E     A++    V+ L ++P++      +
Sbjct: 37  VAPFLHTIILSSVFSASIYPFYRRLTSYLGERPVPAALLVLAGVVILVVIPVVVFVIGLI 96

Query: 87  LEMKELVSKVV--LANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            +    VS +   LA   G+      +  P   W  E           ++       +  
Sbjct: 97  PQAVASVSAITRWLAGHGGLDGLNDAALAPYIAWVRENLPFIDPAQLDVRSSLVQASRAA 156

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
           G   + ++ +      L      + +++ +FF  +DG  + Q++  L   L      +I 
Sbjct: 157 G-QTLLQWGTYVLGNTLLLFGHFLLLLLCMFFMLKDGAWMVQRVRYLSP-LRIDQQDRII 214

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFT 263
             + +V RS  +G  ++A+ +GL+ G A    G+P  +  G + A  +++P  G  + + 
Sbjct: 215 LELRRVGRSVLVGGLLVAVIQGLLGGVALAAVGIP-ALFWGTLMAFASLVPVVGTGLVWV 273

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
               YLL+     +A  L LW  I +   D  LRP+ + G + +P    F  ++GGV+  
Sbjct: 274 PAVCYLLLTSQWESALFLSLWCGIVVVGADSILRPYFMRGGVGMPVFFIFLSILGGVKAF 333

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKE 351
           G+LG+  GP++++   V+        ++
Sbjct: 334 GMLGILDGPLILSFTVVMLSLYGDEYRD 361


>gi|332182085|gb|AEE17773.1| protein of unknown function UPF0118 [Treponema brennaborense DSM
           12168]
          Length = 407

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 72/374 (19%), Positives = 149/374 (39%), Gaps = 22/374 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE--- 57
           M          M  +   + ++ L  L  FF  +L  +++     P++   +S+      
Sbjct: 39  MDNKRTLQTVFMFALFALLFVLILGMLHPFFTVILWTILLYIILNPLHHRCVSRLNAQKK 98

Query: 58  ----SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
                   LA + +V  + + I PL+ +    + +M   +  V          P +L+  
Sbjct: 99  LYEFRRHVLAGVFSVGTLIIIIGPLITIATLLVQQMLSFLHAVEDFINRN---PDFLTSS 155

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGM-------IFLDYCLS 166
             G        +       L     T L+TN I FI +++SR             ++ +S
Sbjct: 156 EIGKSVLGFIDRFNLDFIDLN---STDLRTNLIKFIQQYSSRIVSTGATVLSSTGNFLVS 212

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
           ++F+  AL+F + DG  ++  L +    + P Y   + +   ++ R  F G  ++A+ +G
Sbjct: 213 VLFVTFALYFCFLDGRYLA-SLLAQAIPINPQYMSALMKKFAEITRHLFSGYILVALYQG 271

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
                   +  V   +   VI    + IP  GA + +  + I +    ++       +  
Sbjct: 272 FAAFIIMSIFRVQGSLLFAVILMFASFIPLFGAALVWLPMGIVICATDSLLKGILFLVLC 331

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            I +  +D  LRP  +   IK+  L  FF ++GG++  G+ GL +GP+++ L   +    
Sbjct: 332 GICVSFLDNFLRPMFLKDRIKVHPLVIFFAILGGLKVFGMNGLLLGPMIIILFFTVLDLL 391

Query: 346 IMAIKENKEKISSN 359
           + +      +I+ +
Sbjct: 392 VNSEAAVPTEITDS 405


>gi|237747158|ref|ZP_04577638.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
 gi|229378509|gb|EEO28600.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
          Length = 359

 Score =  138 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 74/339 (21%), Positives = 143/339 (42%), Gaps = 20/339 (5%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           + +       F A +  AL +     P++     K +   TF A++ +   + + ++P+L
Sbjct: 35  VFLCYLMTLPFLASLAWALALAVLFMPLHRKICRKIK-RPTFSAILTSAIAIVIVVIPVL 93

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE--LWTKHLSHPQSLKILS 137
            +    +LE+    + ++   + G     W  ++    +  +  LW ++     SL    
Sbjct: 94  LITVRVVLEISRGSTLIMSKVESG----EWQRNLERMPYVGKVLLWAENQLDIPSLIDNL 149

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            +FL      F+               + I+     LFFF RD   I + +      L  
Sbjct: 150 TSFLTAQVTSFLRSS--------FIQVIVIVLTFYLLFFFLRDRNQILRTIRRFSP-LCG 200

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG- 256
                + +++   IR+T  G   +A  +G + G  +W+ G+P+ +  G I  I+++IP  
Sbjct: 201 CETNGLFKVISTTIRATVFGTIAVAAVQGSLAGFMFWMLGLPAPLLWGAIMTILSIIPLL 260

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           GA I +   SIYL + GN+     L  WG   +  VD  L P L+   ++L  +  F  L
Sbjct: 261 GAYIIWLPASIYLALDGNLMYGLILAGWGMFVVGTVDNLLYPILISKKLRLHTVVAFISL 320

Query: 317 VGGVRTMGLLGLFIGPVLM---ALIAVIWKESIMAIKEN 352
            GG+   G  G+ +GP+ +   A +  +W+   +  ++ 
Sbjct: 321 AGGILVFGAAGIVLGPITLTASAYLMHLWRSRTVESRKP 359


>gi|86130132|ref|ZP_01048732.1| conserved hypothetical protein [Dokdonia donghaensis MED134]
 gi|85818807|gb|EAQ39966.1| conserved hypothetical protein [Dokdonia donghaensis MED134]
          Length = 345

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 55/335 (16%), Positives = 126/335 (37%), Gaps = 22/335 (6%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +  + + +L A+ +           + K++ +S+  A +       + +VP+  L     
Sbjct: 29  MATYLSGILGAITLFVLLRKWQEYLVKKRKWNSSVSACVLMAGSFLVILVPIAGLVLMLT 88

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++ + V                      G   + + T+         +   + + T+ +
Sbjct: 89  SKISKAVEN-------------------SGKVINIVKTEMADIESRFGLDIASSIDTSSV 129

Query: 147 -DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            D+I            +  ++I  M   L++   +  +  + +      L     K I +
Sbjct: 130 TDWISSNLQGLAGGTFNVFIAIGLMYFMLYYMLTNRRTFRESMLEYIP-LSEKNLKLIGK 188

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTA 264
              ++++S  +G+ ++A+ +GLV    + + GV        I  + +MIP  G  +    
Sbjct: 189 DSQELVKSNAIGIPLVALLQGLVALIGFLILGVEDPFFWFAIVTVGSMIPFVGTALGIVP 248

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           V I L   G+I+ A  + ++G + +   D   R  +      +  L T  G++ GV   G
Sbjct: 249 VCIILYAAGDIWQAIVMIIYGTVVVGSTDNLFRLVIQKRLADVHPLITIIGVIVGVPLFG 308

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            +GL  GP+++++  +I K       + K      
Sbjct: 309 FIGLIFGPIVVSIFLLIVKIYKQEYGKEKPSEQEE 343


>gi|91774322|ref|YP_567014.1| hypothetical protein Mbur_2413 [Methanococcoides burtonii DSM 6242]
 gi|91713337|gb|ABE53264.1| protein of unknown function UPF0118 [Methanococcoides burtonii DSM
           6242]
          Length = 345

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 57/338 (16%), Positives = 139/338 (41%), Gaps = 9/338 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I+ + +V  Y L  +    L A I+     P+Y     + +      A++  +  M L +
Sbjct: 16  IIVLAVVLSYALLPYINAFLGAFILYVIFKPVYILLTERLKLKENISAILVMILSMILVV 75

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +P+ ++F   + E++ +++ ++  N   + +  +   +    + +E+        + +  
Sbjct: 76  LPIYYMFTLIIGEIEMVITNIIT-NLSYVDITNYFDIVKNIDYINEIAPDIDIQGKIVT- 133

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                L +    ++ +             +S+I M   L++ +    +            
Sbjct: 134 -----LISTLGSYLSKHLIGAVQNISGLLISVIIMFFLLYYLFTSTNTNISNQLQDLIPF 188

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 K+   +  +I ST +   +IA+ +G ++G  ++  G+        +T +++ +P
Sbjct: 189 NKKNTNKLLTEIKNIIHSTLIATLLIAVLQGTIIGITFYAVGINGVALWAAVTTVLSFLP 248

Query: 256 G-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             GAP+ +    ++ LI  +   A  + + G I L  +D  LRP++      +    +  
Sbjct: 249 VVGAPLVWAPAVLFKLITQDYVAAIVILVAG-IILSNIDNVLRPYIQKKVGAMHPFVSLL 307

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           G+  G+   GL+G+ +GP+L++   +I K       +N
Sbjct: 308 GIFVGIYLFGLVGIVVGPLLISSFLLILKMFNEEYIQN 345


>gi|257457925|ref|ZP_05623084.1| putative membrane protein [Treponema vincentii ATCC 35580]
 gi|257444638|gb|EEV19722.1| putative membrane protein [Treponema vincentii ATCC 35580]
          Length = 362

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 57/363 (15%), Positives = 137/363 (37%), Gaps = 9/363 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI-------S 53
           M++++         ++   + +       + + +L + I+     P+Y   I        
Sbjct: 1   MQKSLKFQTVSFFIILAITVTLVARVFLPYASVLLWSAILYIMFGPLYHKLITKLNPESR 60

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
             +     +A I +  ++ L    + F     + + +  V KV+        +     D 
Sbjct: 61  WFKARQKIIAAIFSAGIIILVAGIMFFFLIKLIGQGQMFVKKVMNFFITHPHLLTMEKDS 120

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
           P      ++    +                   D I R+A+       ++ LS++FM  A
Sbjct: 121 PLNELVMQISMGTIDLSSFDLKKELMNFFLQYADTIIRYATGIAKNIGNFVLSLLFMCFA 180

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           L+F + DG  +     +    +  +  +K++  +   I + F+G  +++I +       Y
Sbjct: 181 LYFLFIDGQYLGSVFVT-AIPIQVSEGQKLAAKIKDTITNLFMGYFLVSICQFAAAFIVY 239

Query: 234 WLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            +  V   + L  +T   + +P  G  + +  + + +L+   +             +  +
Sbjct: 240 TIFRVEGALLLSFLTFFSSFLPFFGCALVWLPLGVEILLTAGLLKGILFLCVAGFFISSI 299

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           D  LRP  +   I++  L  FF ++GG+R   L G+ +GP+ + L+  +   +  +   +
Sbjct: 300 DNFLRPMFLQNRIQIHPLLIFFSILGGIRFFKLNGIVLGPMFVILLFTLIDIARTSDSTD 359

Query: 353 KEK 355
            E+
Sbjct: 360 IEE 362


>gi|148261662|ref|YP_001235789.1| hypothetical protein Acry_2679 [Acidiphilium cryptum JF-5]
 gi|326405154|ref|YP_004285236.1| hypothetical protein ACMV_30070 [Acidiphilium multivorum AIU301]
 gi|146403343|gb|ABQ31870.1| protein of unknown function UPF0118 [Acidiphilium cryptum JF-5]
 gi|325052016|dbj|BAJ82354.1| hypothetical protein ACMV_30070 [Acidiphilium multivorum AIU301]
          Length = 352

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 128/326 (39%), Gaps = 23/326 (7%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           +++       F   +  AL +     P+               A+I       +   P +
Sbjct: 35  LVLCALLAAPFAGALTWALTLAILFTPLQRRLERLVR-HPGAAAIITVGIAAIVVAAPAV 93

Query: 80  FLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            +    + E     + V      G + VP  +            W       Q++   + 
Sbjct: 94  LVIERLVREAAASAAYVQQHLAAGTLAVPPQVD-----------WLARQIDLQAMITRAS 142

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             L T G  F+    ++         + I+     LFFF R   + +         L   
Sbjct: 143 GLLSTVGASFLRGSLAQ--------AVEIVLTFYILFFFLR-DRARADAALRAVLPLTGP 193

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-G 257
              ++       + +   G  +++  +GL+ G  +W  G+ + +  GV+  +++++P  G
Sbjct: 194 ETDRLFSRTADTVYAVIYGTVMVSTLQGLLGGLMFWGLGLAAPLLWGVVMGMLSLVPVLG 253

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
           A I +   ++ L + G+   A  L LWGA+ +  +D  +RP LVG  ++L  +P+F  ++
Sbjct: 254 AFIVWIPEAVLLALNGHEEKAIILSLWGALVVGTIDNVVRPVLVGNRLQLHTVPSFIAII 313

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWK 343
           GG+   G  G  +GP++++   V+++
Sbjct: 314 GGLILFGPPGFVLGPLIVSATLVLFE 339


>gi|149189367|ref|ZP_01867652.1| hypothetical membrane spanning protein [Vibrio shilonii AK1]
 gi|148836725|gb|EDL53677.1| hypothetical membrane spanning protein [Vibrio shilonii AK1]
          Length = 354

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 55/340 (16%), Positives = 129/340 (37%), Gaps = 7/340 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I  ++      L+ F   V+   II    +P+     +K   S    + + ++  + L +
Sbjct: 21  ISILVYWCFSILRPFMMLVVWGGIIAVALYPVALWLHAKCRISKGKASGLLSLIGVLLLL 80

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQSLK 134
           +PL++L         E+ S++           + + ++P  G           ++ +   
Sbjct: 81  IPLVWLSSGLYTGGTEVYSQLQDGTLQVPRPTQAVKELPVVGEKIYAAMYHASTNLEGAM 140

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                 +K+     +      F    L + +S I   +    F  +  +  +  + +   
Sbjct: 141 AKYSEQIKSLATT-LAGAVGSFAGGLLQFIVSTIIAGV----FMANAENCQKAFNKVANR 195

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L      ++  +    +RS   G+  +A+ + ++         VP+     +   +MA+I
Sbjct: 196 LTNGKGAELVNLSKSTVRSVVQGVLGVAVIQSIMAAVGMAFVDVPAIGLWALAVLLMAII 255

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
                ++   V  Y+    +   A    +W  I +   D  L+P L+     +P L    
Sbjct: 256 QLPPILALIPVIAYVFGTQSTTAAVLFLVWCVI-VSGSDAVLKPMLLSRGSDIPMLVLLL 314

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G +GG+   G++GLF+G V+++L   ++   +   ++ K+
Sbjct: 315 GALGGMAMSGIVGLFVGAVVLSLSYQLFVSWLEEPEKAKD 354


>gi|325958067|ref|YP_004289533.1| hypothetical protein Metbo_0309 [Methanobacterium sp. AL-21]
 gi|325329499|gb|ADZ08561.1| protein of unknown function UPF0118 [Methanobacterium sp. AL-21]
          Length = 377

 Score =  136 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 63/358 (17%), Positives = 142/358 (39%), Gaps = 10/358 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEES 58
           M   + N      ++I+ +++VS   L    + V+   I  +   P+       +K +  
Sbjct: 12  MINGLKNNITSAIFIIILLMVVSAVLLTPMLSMVVLGAIFAYAIRPLSRKLEPYTKFQSV 71

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
           + F+ +I  +  + + ++  +         +   V  + L++ +   +  +       + 
Sbjct: 72  AIFVGMIIVILPLIIILLIFINTIISAAPSLIVFVKNLNLSSLNSTTLQNY------PLI 125

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                    S   +  + S      + +  +  +   F        L +     + F+F 
Sbjct: 126 QQNFPGSSSSQMINSVVNSIYVGMGDVVRSVTEYLLGFVQSIPTLLLQLFIFFASTFYFA 185

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           RDG  I + L+ +       Y+K + + +  V++S F G  + A   G++ G  +W+ G 
Sbjct: 186 RDGDRIWEYLNYIIPDDRKHYFKTLLKEIDLVLKSIFFGHFVTAALTGIISGIGFWIMGY 245

Query: 239 PSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P  + LG +T    ++P  G   +  A+++Y L+ GN   A  +   G + L ++D  +R
Sbjct: 246 PYPLFLGTLTGFFQLMPIIGHWPTIVALALYDLVIGNFLRAAAVISLGVL-LSLMDMYVR 304

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           P + G    +  L    G + G   +GL+G  IGP+++ +            ++   +
Sbjct: 305 PKVAGKYADIHPLIFLLGFICGPLVLGLVGFIIGPLVLGVTYAAVVAYKKENQDKNPE 362


>gi|325287380|ref|YP_004263170.1| hypothetical protein Celly_2482 [Cellulophaga lytica DSM 7489]
 gi|324322834|gb|ADY30299.1| protein of unknown function UPF0118 [Cellulophaga lytica DSM 7489]
          Length = 339

 Score =  136 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 138/359 (38%), Gaps = 23/359 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF--LKGFFAPVLSALIIGFTSWPIYSSFISKKEES 58
           M+    +    +  +++ +++  L F  +  + + VL A+ +            +K    
Sbjct: 1   MKYISPHIIRQIFVLLLIVLMGGLIFKEILPYLSGVLGAITMYVILKKPMQKLANK-GWY 59

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
           +   A+   +      ++PL  L +    ++K  V         G    + +        
Sbjct: 60  ANIAAIFLMILSFLCIMIPLTGLGFMMGSKIKYAVDNSQKVINAGKNQLQKVESFLHIDL 119

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            +E+ T  ++                  +++      F     +  +SI  M   L+F  
Sbjct: 120 GTEIDTSSIT------------------NWLSDKLQNFAGGTFNMVISITIMYFMLYFML 161

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            +   + + L      +     K I + +   +++  LG+ ++A+G+GLV    +++ G+
Sbjct: 162 TNRKKLRESLFEYIP-IKDTNLKTIGKEITANVKANALGIPLVALGQGLVALLGFYIFGI 220

Query: 239 PSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
                   +  I +MIP  G+ +    V I  L  GN F A  + ++G + +   D   R
Sbjct: 221 EDPFFWAAVVTIGSMIPFVGSALGTVPVFILALSNGNTFQAWGILIYGLVAIGATDNIFR 280

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            +++     +  L T  G++ GV   G +GL  GP+L++L  V+ +       E+   I
Sbjct: 281 LYILKRLDDVHPLITLVGVLVGVPLFGFIGLIFGPLLVSLFLVVVRIYKNQYGESGNSI 339


>gi|208778982|ref|ZP_03246328.1| hypothetical membrane protein [Francisella novicida FTG]
 gi|208744782|gb|EDZ91080.1| hypothetical membrane protein [Francisella novicida FTG]
 gi|328676661|gb|AEB27531.1| hypothetical protein FNFX1_0583 [Francisella cf. novicida Fx1]
          Length = 341

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 130/326 (39%), Gaps = 7/326 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  +  +  + L  F  P+L A ++     P+            +  + I  ++++   
Sbjct: 12  IICLVGALIGWVLYPFIYPILFAGLLAIILAPLQLYLEQHIGRHKS--SFIIVIAILLCI 69

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +PLL +  Y + E+   +      +Q    + + +++IP   +      +H  +  ++ 
Sbjct: 70  FIPLLVVISYVITEIISYLQHSESLSQTFSQLSKSIANIP---YIGSTLQEHFDNLLNMV 126

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
              +  + +N    +P      G   +      +  ++ ++ F     S+ + L  +   
Sbjct: 127 NQDKDMIISNLGKILPTI-RYIGFTSVSLVTDFLITLLLVYQFLVSSTSLEKFLKKIVLK 185

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F               R   L + + A+  G ++   + + G+PS +  G I AI +M+
Sbjct: 186 DFHDS-DSFISAAIATTRRVSLAIFLTAMLVGTIMTITFSMVGIPSPILFGFIAAIASMV 244

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I +  +   + +      A  + + G       D  ++P ++   +KL F+ +  
Sbjct: 245 PFMVGIIYILIGASVFVIYGATKAIIILIIGFSLNIFTDNIMQPKIINKQVKLSFVASLI 304

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAV 340
           G++GG+   G +G+F+GPV+  +  V
Sbjct: 305 GIMGGIHAFGFIGIFLGPVIFNVAFV 330


>gi|194323489|ref|ZP_03057266.1| domain protein of unknown function, putative [Francisella
           tularensis subsp. novicida FTE]
 gi|194322344|gb|EDX19825.1| domain protein of unknown function, putative [Francisella
           tularensis subsp. novicida FTE]
          Length = 341

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 130/326 (39%), Gaps = 7/326 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  +  +  + L  F  P+L A ++     P+            +  + I  ++++   
Sbjct: 12  IICLVGALIGWVLYPFIYPILFAGLLAIILAPLQLYLEQHIGRHKS--SFIIVIAILLCI 69

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +PLL +  Y + E+   +      +Q    + + +++IP   +      +H  +  ++ 
Sbjct: 70  FIPLLVVISYVITEIISYLQHSESLSQTFSQLSKSIANIP---YIGSTLQEHFDNLLNMV 126

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
              +  + +N    +P      G   +      +  ++ ++ F     S+ + L  +   
Sbjct: 127 NQDKDIIISNLGKILPTI-RYIGFTSVSLVTDFLITLLLVYQFLVSSTSLEKFLKKIVLK 185

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F               R   L + + A+  G ++   + + G+PS +  G I AI +M+
Sbjct: 186 DFHDS-DSFISAAIATTRRVSLAIFLTAMLVGTIMTITFSMVGIPSPILFGFIAAIASMV 244

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I +  +   + +      A  + + G       D  ++P ++   +KL F+ +  
Sbjct: 245 PFMVGIIYILIGASVFVIYGATKAIIILIIGFSLNIFTDNIMQPKIINKQVKLSFVASLI 304

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAV 340
           G++GG+   G +G+F+GPV+  +  V
Sbjct: 305 GIMGGIHAFGFIGIFLGPVIFNVAFV 330


>gi|89256840|ref|YP_514202.1| hypothetical protein FTL_1556 [Francisella tularensis subsp.
           holarctica LVS]
 gi|167009266|ref|ZP_02274197.1| hypothetical protein Ftulh_00695 [Francisella tularensis subsp.
           holarctica FSC200]
 gi|89144671|emb|CAJ79995.1| conserved hypothetical membrane protein [Francisella tularensis
           subsp. holarctica LVS]
          Length = 341

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 131/326 (40%), Gaps = 7/326 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  +  +  + L  F  P+L A ++     P+            +  + I  ++++   
Sbjct: 12  IICLVGALIGWVLYPFIYPILFAGLLAIILAPLQLYLEQHIGRHKS--SFIIVIAILLCI 69

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +PLL +  Y + E+   +      +Q    + + +++IP   +      +H  +  ++ 
Sbjct: 70  FIPLLIVLSYVITEIISYLQHSESLSQTFSQLSKSIANIP---YIGSTLQEHFDNLLNMV 126

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
              +  + +N    +P      G   +      +  ++ ++ F     S+ + L  +   
Sbjct: 127 NQDKDMIISNLGKILPTI-RYIGFTSVSLLTDFLITLLLVYQFLVSSTSLEKFLKKIILK 185

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F               R   L + + A+  G ++   + + G+PS +  G I AI +M+
Sbjct: 186 DFHDS-DSFISAAIATTRRVSLAIFLTAMLVGTMMTITFSMVGIPSPILFGFIAAIASMV 244

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I +  +   + +   +  A  + + G       D  ++P ++   +KL F+ +  
Sbjct: 245 PFMVGIIYILIGASVFVIYGVTKAIIILIIGFSLNIFTDNIMQPKIINKQVKLSFVASLI 304

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAV 340
           G++GG+   G +G+F+GPV+  +  V
Sbjct: 305 GIMGGIHAFGFIGIFLGPVIFNVAFV 330


>gi|253572345|ref|ZP_04849748.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Bacteroides
           sp. 1_1_6]
 gi|251838120|gb|EES66208.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Bacteroides
           sp. 1_1_6]
          Length = 235

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 101/230 (43%), Gaps = 6/230 (2%)

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFL----DYCLSIIFMIIALFFFYRDGFSISQQLD 189
           K      L  + + FI     R G I +       +++  M+  L+F    G  +   ++
Sbjct: 6   KKRGNDVLGKDTLSFIVSILPRIGQIIMESISSLAINLFVMVFVLYFMLIGGKKMEAYVN 65

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +      A  +++   +  ++RS  +G+ ++AI +G V    Y + G P+ + LG +T 
Sbjct: 66  DILP-FNEANTQEVIHEINMIVRSNAIGIPLLAIIQGGVAMIGYLIFGAPNILVLGFLTC 124

Query: 250 IMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
              +IP  G  + +  V+ YL + G+ FNA  L  +G I +   D  +R  L        
Sbjct: 125 FATIIPMVGTALIWFPVAAYLAVTGDWFNAIGLAAYGGIVISQSDNLIRFILQKKMADTH 184

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            L T FG+V G+   G +G+  GP+L++L  +          + +  + +
Sbjct: 185 PLITIFGVVIGLPLFGFMGVIFGPLLLSLFFLFVDMFKKEYLDLRNNLPA 234


>gi|88704256|ref|ZP_01101970.1| Integral membrane protein [Congregibacter litoralis KT71]
 gi|88701307|gb|EAQ98412.1| Integral membrane protein [Congregibacter litoralis KT71]
          Length = 382

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 55/343 (16%), Positives = 130/343 (37%), Gaps = 9/343 (2%)

Query: 12  MRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +R  ++F+ ++  +     F   +L  +I+  + +P++ +   +    +   A    +  
Sbjct: 21  IRLGLVFVGVVACVEVFAPFMPIMLWGMILAISLYPVFGALRGRTGWGAGSTASFIVILG 80

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSH 129
           + L  VP + L       + +++                + + P  G    E W++    
Sbjct: 81  ILLLGVPTVLLGSSFATHIFDVIGDFDAQAVTVRLPDPSVKEWPIIGEHVYEAWSQAHED 140

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             +     +  L       +   AS  G +   +   II  I+  +     G S +  + 
Sbjct: 141 LPAYLESLQPQLGNFSKAALRSAASTAGTLLFFFGALIIAGIMMAY-----GESGNAAMA 195

Query: 190 SLGEHLFPA-YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +   +        +  I    +RS   G+  +A  + L+LG  + +AG+P+   L ++ 
Sbjct: 196 RIFSRMVGEQRGPGLHSITTLTVRSVATGVVGVAFIQALLLGVGFMMAGIPAAGLLALVV 255

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNAT-CLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++ ++   A +       Y+   G+       L     +     D  L+P L+G  + +
Sbjct: 256 LVIGILQLPALLVSLPAIAYVWGMGDGSTVVNILLTVYFVVAGFADNVLKPMLLGRGVSV 315

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           P      G +GG+   G++GLF+G V++++   ++   +    
Sbjct: 316 PMPVVLIGALGGMMGAGIVGLFVGAVVLSVGYELFMSWVDEAP 358


>gi|283851774|ref|ZP_06369052.1| protein of unknown function UPF0118 [Desulfovibrio sp. FW1012B]
 gi|283572894|gb|EFC20876.1| protein of unknown function UPF0118 [Desulfovibrio sp. FW1012B]
          Length = 367

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 131/343 (38%), Gaps = 10/343 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
            +  + +    L  F   ++ AL++     P+ +             A   T+  +   +
Sbjct: 16  FLAAVSIMATLLWPFRHAMVIALVLATLVRPLGAWLPRFMRARRLLAATTLTLLTVLFVL 75

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHG--IPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           +PL  L      E    V       + G    +  W   +P   WA             +
Sbjct: 76  LPLAGLLTLLTSEAVTFVQTAAAWFKAGGLHDIVAWARTLPLPGWAKAYLVASPIDLHKI 135

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           +  +       G+ F+       G    +  L +  +++ LF+   +G  ++++L     
Sbjct: 136 EAWALASGGDIGLWFL-----WAGKGVANIGLQLFVLVMFLFYLLAEGEFLTERLRRASP 190

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            L       I      V RS  LG    ++  GLV G   W+AG+ +    G +  I ++
Sbjct: 191 -LRRDQEDAIIARFKAVSRSVLLGGLGTSLAIGLVTGVGLWIAGI-TPFLWGAVAVIASL 248

Query: 254 IPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP  G  +      IYL+  G+   A  L L+  + +  VD  +RP  + G  ++  +  
Sbjct: 249 IPVVGLSLILIPSIIYLVATGSWKMAIFLALYWLLVINSVDNVVRPLFMRGQARMSLVWV 308

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           F  ++GG+   G LGL  GP+ +++  + +   + A  E +++
Sbjct: 309 FVSILGGILLFGPLGLLYGPLALSISFLFFDIFLEAQGETEDR 351


>gi|312969715|ref|ZP_07783898.1| UPF0118 inner membrane protein ydiK [Escherichia coli 1827-70]
 gi|310338000|gb|EFQ03089.1| UPF0118 inner membrane protein ydiK [Escherichia coli 1827-70]
          Length = 207

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 83/189 (43%), Gaps = 1/189 (0%)

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
             M++     Y  G  ++Q +      L          +  + IR+  LG+ + A+ + +
Sbjct: 5   ALMLLFSALLYWRGEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAV 64

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
           + G    ++GVP    L V+  +  ++  G         I+L   G+    T L +W   
Sbjct: 65  LGGIGLAVSGVPYATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSG- 123

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            +  +D  +RP L+     LP +    G++GG+   G++GLFIGPVL+A+   ++   + 
Sbjct: 124 VVGTLDNVIRPMLIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVE 183

Query: 348 AIKENKEKI 356
            +    ++ 
Sbjct: 184 EVPPPTDQP 192


>gi|303327143|ref|ZP_07357585.1| putative membrane protein [Desulfovibrio sp. 3_1_syn3]
 gi|302863131|gb|EFL86063.1| putative membrane protein [Desulfovibrio sp. 3_1_syn3]
          Length = 368

 Score =  135 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 56/299 (18%), Positives = 116/299 (38%), Gaps = 6/299 (2%)

Query: 49  SSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP- 107
             F+ +        + IA  ++     VP+  L      +    ++++     +   +P 
Sbjct: 66  RRFLIRFSHHMPLCSYIA--AIFSGLFVPIAILALLVSPQAVAGLARLRELQANNFQLPP 123

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
           +W+  I     +   +              +T         + R     G     +  + 
Sbjct: 124 QWVEHIQHWRLSLTEYPSIEKAVNDFLHNLDTLFGDAVTMLVSRSFGFLGGTMTAFWTTF 183

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           +F+ + + F         +++     HL  A  ++    + + +R   LG+ ++A+ +G 
Sbjct: 184 LFLTLTVLFTVY--SRRIRKVTCRIFHLPQALLRRFISAIHRALRGIMLGIVLVALAQGF 241

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           + G  + +AG       G++  ++A IP  G  + +  + + L   G    A  L LWG 
Sbjct: 242 LCGIGFAVAGFNQPAFWGMLATLVAPIPVVGTALVWLPLCLSLWFTGKTMAAVGLALWGM 301

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           + +  VD  LRP  +   IK PF      ++ G+ + G +GL  GPVL+A      +E+
Sbjct: 302 LAVAGVDNVLRPLFLRQGIKAPFFVLILAILCGLASFGPVGLIAGPVLLAFAMQAVEEA 360


>gi|134302427|ref|YP_001122397.1| hypothetical protein FTW_1565 [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134050204|gb|ABO47275.1| hypothetical membrane protein [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 341

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 130/326 (39%), Gaps = 7/326 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  +  +  + L  F  P+L A ++     P+            +  + I  ++++   
Sbjct: 12  IICLVGALIGWVLYPFIYPILFAGLLAIILAPLQLYLEQHIGRHKS--SFIIVIAILLCI 69

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +PLL +  Y + E+   +      +Q    + + +++IP   +      +H  +  ++ 
Sbjct: 70  FIPLLIVLSYVITEIISYLQHSESLSQTFSQLSKSIANIP---YIGSTLQEHFDNLLNMV 126

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
              +  + +N    +P      G   +      +  ++ ++ F     S+ + L  +   
Sbjct: 127 NQDKDMIISNLGKILPTI-RYIGFTSVSLLTDFLITLLLVYQFLVSSTSLEKFLKKIILK 185

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F               R   L + + A+  G ++   + + G+PS +  G I AI +M+
Sbjct: 186 DFHDS-DSFISAAIATTRRVSLAIFLTAMLVGTMMTITFSMVGIPSPILFGFIAAIASMV 244

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I +  +   + +      A  + + G       D  ++P ++   +KL F+ +  
Sbjct: 245 PFMVGIIYILIGASVFVIYGATKAIIILIIGFSLNIFTDNIMQPKIINKQVKLSFVASLI 304

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAV 340
           G++GG+   G +G+F+GPV+  +  V
Sbjct: 305 GIMGGIHAFGFIGIFLGPVIFNVAFV 330


>gi|254372555|ref|ZP_04988044.1| conserved hypothetical protein [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570282|gb|EDN35936.1| conserved hypothetical protein [Francisella novicida GA99-3549]
          Length = 346

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 130/326 (39%), Gaps = 7/326 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  +  +  + L  F  P+L A ++     P+            +  + I  ++++   
Sbjct: 17  IICLVGALIGWVLYPFIYPILFAGLLAIILAPLQLYLEQHIGRHKS--SFIIVIAILLCI 74

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +PLL +  Y + E+   +      +Q    + + +++IP   +      +H  +  ++ 
Sbjct: 75  FIPLLVVISYVITEIISYLQHSESLSQTFSQLSKSIANIP---YIGSTLQEHFDNLLNMV 131

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
              +  + +N    +P      G   +      +  ++ ++ F     S+ + L  +   
Sbjct: 132 NQDKDMIISNLGKILPTI-RYIGFTSVSLVTDFLITLLLVYQFLVSSTSLEKFLKKIVLK 190

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F               R   L + + A+  G ++   + + G+PS +  G I AI +M+
Sbjct: 191 DFHDS-DSFISAAIATTRRVSLAIFLTAMLVGTIMTITFSMVGIPSPILFGFIAAIASMV 249

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I +  +   + +      A  + + G       D  ++P ++   +KL F+ +  
Sbjct: 250 PFMVGIIYILIGASVFVIYGATKAIIILIIGFSLNIFTDNIMQPKIINKQVKLSFVASLI 309

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAV 340
           G++GG+   G +G+F+GPV+  +  V
Sbjct: 310 GIMGGIHAFGFIGIFLGPVIFNVAFV 335


>gi|118497190|ref|YP_898240.1| hypothetical protein FTN_0591 [Francisella tularensis subsp.
           novicida U112]
 gi|118423096|gb|ABK89486.1| conserved hypothetical membrane protein [Francisella novicida U112]
          Length = 346

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 130/326 (39%), Gaps = 7/326 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  +  +  + L  F  P+L A ++     P+            +  + I  ++++   
Sbjct: 17  IICLVGALIGWVLYPFIYPILFAGLLAIILAPLQLYLEQHIGRHKS--SFIIVIAILLCI 74

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +PLL +  Y + E+   +      +Q    + + +++IP   +      +H  +  ++ 
Sbjct: 75  FIPLLVVISYVITEIISYLQHSESLSQTFSQLSKSIANIP---YIGSTLQEHFDNLLNMV 131

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
              +  + +N    +P      G   +      +  ++ ++ F     S+ + L  +   
Sbjct: 132 NQDKDIIISNLGKILPTI-RYIGFTSVSLVTDFLITLLLVYQFLVSSTSLEKFLKKIVLK 190

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F               R   L + + A+  G ++   + + G+PS +  G I AI +M+
Sbjct: 191 DFHDS-DSFISAAIATTRRVSLAIFLTAMLVGTIMTITFSMVGIPSPILFGFIAAIASMV 249

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I +  +   + +      A  + + G       D  ++P ++   +KL F+ +  
Sbjct: 250 PFMVGIIYILIGASVFVIYGATKAIIILIIGFSLNIFTDNIMQPKIINKQVKLSFVASLI 309

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAV 340
           G++GG+   G +G+F+GPV+  +  V
Sbjct: 310 GIMGGIHAFGFIGIFLGPVIFNVAFV 335


>gi|289580082|ref|YP_003478548.1| hypothetical protein Nmag_0398 [Natrialba magadii ATCC 43099]
 gi|289529635|gb|ADD03986.1| protein of unknown function UPF0118 [Natrialba magadii ATCC 43099]
          Length = 425

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 60/345 (17%), Positives = 125/345 (36%), Gaps = 17/345 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            + +   L+ L  +  +   VL  +++ +   P                A+      +  
Sbjct: 19  VVAVVAALLGLLVILPYLQYVLLGVVLAYILRPAQRWLERYTG--PLIAALTLVAVAILA 76

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            ++PL ++      E   LV  +         +   +      +   E +  +       
Sbjct: 77  ILLPLTYVLIVAFREALGLVGAIQNGQLDIEAIESQIEATGYSIDVVEFYQTYQEP---- 132

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                      G+  +   A           + +   +  LF   RDG   ++ +  +  
Sbjct: 133 --------IATGLQGLAMSALDIAGGVPGILIGLTVTLFVLFALLRDGSEFAEWVTRVLP 184

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            +      ++   + +++ ++ +G   +A  + ++LG    L  VP+ V L V+T + A+
Sbjct: 185 -VEDELLSELLSELDQLMWASVVGNVAVAAIQAILLGIGLALLEVPAVVLLSVVTFVFAL 243

Query: 254 IPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +P  GA   +  VS+YLL  G    A  L  +G+I +   D  +RP L+G          
Sbjct: 244 LPLIGAFGVWVPVSLYLLATGQFVVAGILVAYGSI-VSASDTYIRPALIGRTSAFNSAII 302

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
             G+ GG+   G +GLFIGPV++    +             + ++
Sbjct: 303 VVGIFGGLIIFGAVGLFIGPVVLGGAKITLDLFARERAAGTQPVT 347


>gi|167584523|ref|ZP_02376911.1| hypothetical protein BuboB_04261 [Burkholderia ubonensis Bu]
          Length = 260

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/209 (23%), Positives = 86/209 (41%), Gaps = 7/209 (3%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+   F       E  T +A + T +V  L ++P+    
Sbjct: 56  WVIRAFIPAIAWACVIAIALWPLLKRFESHRLFRERPTVVATVITAAVSLLVVLPVAIAL 115

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-MWASELWTKHLSHPQSLKILSETFL 141
              + +  EL   +     +GIPVP  ++ +P G    +  W  HL HP    + +E  +
Sbjct: 116 IQAIGQAHELREWLRTVQDNGIPVPDVVARLPVGAPQVAAWWQAHLGHP----LHAEAAM 171

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
           K    +    F   FG       L   FM++ LF   R G  +S  L    +  F     
Sbjct: 172 KGVNSETFLAFGRHFGSKLAHAVLEFGFMLVTLFVILRAGHKLSGALLQGVQRAFGGNGA 231

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           ++   +   +  T  G+ ++ +GEG +LG
Sbjct: 232 QLIERMAAAVHGTVTGLVVVGLGEGALLG 260


>gi|328675713|gb|AEB28388.1| conserved hypothetical protein [Francisella cf. novicida 3523]
          Length = 341

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 129/326 (39%), Gaps = 7/326 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  +  +  + L  F  P+L A ++     P+            +  + +  ++++   
Sbjct: 12  IICLVGALIGWVLYPFIYPILFAGLLAIILAPLQLYLEQHIGRHKS--SFLIVIAILLCI 69

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +PLL +  Y + E+   +      +Q    + + +++IP   +      +H     ++ 
Sbjct: 70  FIPLLIVLSYVITEIISYLQHSESLSQTFSQLSKSIANIP---YIGTTLQEHFDKLLNMV 126

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
              +  + +N    +P      G   +      +  ++ ++ F     S+ + L  +   
Sbjct: 127 NQDKNMIISNLGKILPTI-RYIGFTSVSLVTDFLITLLLVYQFLVSSTSLEKFLKKIVLK 185

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F               R   L + + A+  G ++   + + G+PS +  G I AI +M+
Sbjct: 186 DFHDS-DSFISAAIATTRRVSLAIFLTAMLVGCIMTITFSMVGIPSPILFGFIAAIASMV 244

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I +  +   + +      A  + + G       D  ++P ++   +KL F+ +  
Sbjct: 245 PFMVGIVYILIGASVFVIYGATKAIIILIIGFSLNIFTDNIMQPKIINKQVKLSFVASLI 304

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAV 340
           G++GG+   G +G+F+GPV+  +  V
Sbjct: 305 GIMGGIHAFGFIGIFLGPVIFNVAFV 330


>gi|254368119|ref|ZP_04984139.1| hypothetical protein FTHG_01453 [Francisella tularensis subsp.
           holarctica 257]
 gi|254369723|ref|ZP_04985733.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|134253929|gb|EBA53023.1| hypothetical protein FTHG_01453 [Francisella tularensis subsp.
           holarctica 257]
 gi|157122682|gb|EDO66811.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 346

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 131/326 (40%), Gaps = 7/326 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  +  +  + L  F  P+L A ++     P+            +  + I  ++++   
Sbjct: 17  IICLVGALIGWVLYPFIYPILFAGLLAIILAPLQLYLEQHIGRHKS--SFIIVIAILLCI 74

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +PLL +  Y + E+   +      +Q    + + +++IP   +      +H  +  ++ 
Sbjct: 75  FIPLLIVLSYVITEIISYLQHSESLSQTFSQLSKSIANIP---YIGSTLQEHFDNLLNMV 131

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
              +  + +N    +P      G   +      +  ++ ++ F     S+ + L  +   
Sbjct: 132 NQDKDMIISNLGKILPTI-RYIGFTSVSLLTDFLITLLLVYQFLVSSTSLEKFLKKIILK 190

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F               R   L + + A+  G ++   + + G+PS +  G I AI +M+
Sbjct: 191 DFHDS-DSFISAAIATTRRVSLAIFLTAMLVGTMMTITFSMVGIPSPILFGFIAAIASMV 249

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I +  +   + +   +  A  + + G       D  ++P ++   +KL F+ +  
Sbjct: 250 PFMVGIIYILIGASVFVIYGVTKAIIILIIGFSLNIFTDNIMQPKIINKQVKLSFVASLI 309

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAV 340
           G++GG+   G +G+F+GPV+  +  V
Sbjct: 310 GIMGGIHAFGFIGIFLGPVIFNVAFV 335


>gi|115315228|ref|YP_763951.1| hypothetical protein FTH_1508 [Francisella tularensis subsp.
           holarctica OSU18]
 gi|115130127|gb|ABI83314.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica OSU18]
          Length = 346

 Score =  134 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 130/326 (39%), Gaps = 7/326 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  +  +  + L  F  P+L A ++     P+            +  + I  ++++   
Sbjct: 17  IICLVGALIGWVLYPFIYPILFAGLLAIILAPLQLYLEQHIGRHKS--SFIIVIAILLCI 74

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +PLL +  Y + E+   +      +Q    + + +++IP   +      +H  +  ++ 
Sbjct: 75  FIPLLIVLSYVITEIISYLQHSESLSQTFSQLSKSIANIP---YIGSTLQEHFDNLLNMV 131

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
              +  + +N    +P      G   +      +  ++ ++ F     S+ + L  +   
Sbjct: 132 NQDKDMIISNLGKILPTI-RYIGFTSVSLLTDFLITLLLVYQFLVSSTSLEKFLKKIILK 190

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F               R   L +   A+  G ++   + + G+PS +  G I AI +M+
Sbjct: 191 DFHDS-DSFISAAIATTRRVSLAIFFTAMLVGTMMTITFSMVGIPSPILFGFIAAIASMV 249

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I +  +   + +   +  A  + + G       D  ++P ++   +KL F+ +  
Sbjct: 250 PFIVGIIYILIGASVFVIYGVTKAIIILIIGFSLNIFTDNIMQPKIINKQVKLSFVASLI 309

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAV 340
           G++GG+   G +G+F+GPV+  +  V
Sbjct: 310 GIMGGIHAFGFIGIFLGPVIFNVAFV 335


>gi|254374014|ref|ZP_04989496.1| conserved hypothetical protein [Francisella novicida GA99-3548]
 gi|151571734|gb|EDN37388.1| conserved hypothetical protein [Francisella novicida GA99-3548]
          Length = 346

 Score =  134 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 130/326 (39%), Gaps = 7/326 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  +  +  + L  F  P+L A ++     P+            +  + I  ++++   
Sbjct: 17  IICLVGALIGWVLYPFIYPILFAGLLAIILAPLQLYLEQHIGRHKS--SFIIVIAILLCI 74

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +PLL +  Y + E+   +      +Q    + + +++IP   +      +H  +  ++ 
Sbjct: 75  FIPLLIVLSYVITEIISYLQHSESLSQTFSQLSKSIANIP---YIGSTLQEHFDNLLNMV 131

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
              +  + +N    +P      G   +      +  ++ ++ F     S+ + L  +   
Sbjct: 132 NQDKDMIISNLGKILPTI-RYIGFTSVSLVTDFLITLLLVYQFLVSSTSLEKFLKKIVLK 190

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F               R   L + + A+  G ++   + + G+PS +  G I AI +M+
Sbjct: 191 DFHDS-DSFISAAIATTRRVSLAIFLTAMLVGTIMTITFSMVGIPSPILFGFIAAIASMV 249

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I +  +   + +      A  + + G       D  ++P ++   +KL F+ +  
Sbjct: 250 PFMVGIIYILIGASVFVIYGATKAIIILIIGFSLNIFTDNIMQPKIINKQVKLSFVASLI 309

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAV 340
           G++GG+   G +G+F+GPV+  +  V
Sbjct: 310 GIMGGIHAFGFIGIFLGPVIFNVAFV 335


>gi|222479371|ref|YP_002565608.1| protein of unknown function UPF0118 [Halorubrum lacusprofundi ATCC
           49239]
 gi|222452273|gb|ACM56538.1| protein of unknown function UPF0118 [Halorubrum lacusprofundi ATCC
           49239]
          Length = 345

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/309 (17%), Positives = 120/309 (38%), Gaps = 17/309 (5%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
            +   +L  +++ +  +P+            T  A++  +  +   ++P+++L    + +
Sbjct: 34  PYLQFILFGVVLAYILFPVQQRAEQHV--RPTIAAIVIVLGALLFVLIPIIYLLTIAVQQ 91

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
              +VS V         +   L      +    L+  +                   +  
Sbjct: 92  SLRVVSAVRNGQIDVASIEELLESTGYRIDLVALYESN------------QERIATSLQE 139

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +   A           + +   +  LF   RDG  +   +      +      ++   + 
Sbjct: 140 VTSGAIDLAGSLPGLFIGLTITLFVLFALLRDGEQLVAWV-QWVLPVDEDILDELREGLD 198

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
           +++ ++ +G   +A  +  +LG    +AG+P+ + L V+T ++ ++P  GA   +   ++
Sbjct: 199 QLMWASVVGNVAVAAIQAALLGVGLAIAGLPAVIFLTVVTFVLTLLPLVGAFGVWVPAAM 258

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           YLL  G    +  + ++G +  F  D  LRP L+G            G+ GG+   G +G
Sbjct: 259 YLLAVGRPIASAAIAVYGLLVTFS-DTYLRPALIGRTGAFNSAIIVIGIFGGLVVFGAVG 317

Query: 328 LFIGPVLMA 336
           LFIGPV++ 
Sbjct: 318 LFIGPVVLG 326


>gi|187932032|ref|YP_001892017.1| hypothetical protein FTM_1403 [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712941|gb|ACD31238.1| conserved hypothetical membrane protein [Francisella tularensis
           subsp. mediasiatica FSC147]
          Length = 346

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 130/326 (39%), Gaps = 7/326 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  +  +  + L  F  P+L A ++     P+            +  + I  ++++   
Sbjct: 17  IICLVGALIGWVLYPFIYPILFAGLLAIILAPLQLYLEQHIGRHKS--SFIIVIAILLCI 74

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +PLL +  Y + E+   +      +Q    + + +++IP   +      +H  +  ++ 
Sbjct: 75  FIPLLIVLSYVITEIISYLQHSESLSQTFSQLSKSIANIP---YIGSTLQEHFDNLLNMV 131

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
              +  + +N    +P      G   +      +  ++ ++ F     S+ + L  +   
Sbjct: 132 NQDKDMIISNLGKILPTI-RYIGFTSVSLLTDFLITLLLVYQFLVSSTSLEKFLKKIILK 190

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F               R   L + + A+  G ++   + + G+PS +  G I AI +M+
Sbjct: 191 DFHDS-DSFISAAIATTRRVSLAIFLTAMLVGTMMTITFSMVGIPSPILFGFIAAIASMV 249

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I +  +   + +      A  + + G       D  ++P ++   +KL F+ +  
Sbjct: 250 PFMVGIIYILIGASVFVIYGATKAIIILIIGFSLNIFTDNIMQPKIINKQVKLSFVASLI 309

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAV 340
           G++GG+   G +G+F+GPV+  +  V
Sbjct: 310 GIMGGIHAFGFIGIFLGPVIFNVAFV 335


>gi|153833033|ref|ZP_01985700.1| transporter, PerM family [Vibrio harveyi HY01]
 gi|148870754|gb|EDL69660.1| transporter, PerM family [Vibrio harveyi HY01]
          Length = 379

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 115/337 (34%), Gaps = 7/337 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           FI++V  +    F   +L AL++    +P+      K   SS   A +  +  + +   P
Sbjct: 28  FIVIVCWWAFLPFLPILLWALVLAIALYPVKLMIERKMGLSSARTATLIAIVGVLILGTP 87

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKIL 136
              +      +   +                 + + P  G    ++W +      +    
Sbjct: 88  TAMVGNSFASKTLGVFESYRDGTLVVSKPADSVKEWPLVGRKLHKVWDEAAEDLPNFIEK 147

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +  +K     FI                 +I  II            ++ +  +     
Sbjct: 148 RQPQIKGVFSWFINS-----ATGAAKSVFMLIGAIIIAGIMLAWAQPAARSIRKIFISFT 202

Query: 197 PA-YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++  +    IR   +G+  IA    +  G    L+GVP+     +I  + A++ 
Sbjct: 203 DEERGPELHELTTATIRQVAIGIIGIAFLTAMTFGGVVALSGVPAAALFTLIALVFAIVQ 262

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
               I        L           +F    I   ++D  L+P ++G  +++P      G
Sbjct: 263 LPVTIIAIVAVAILWSGDTGTIHNSIFTVLLIAASLIDNFLKPLILGRGLEVPMPIVLIG 322

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            VGG+ + G+LG+FIG   +A    ++ + + A  ++
Sbjct: 323 AVGGMMSGGILGMFIGAAFLAAGYQVFMKWVDAETQD 359


>gi|332171189|gb|AEE20444.1| protein of unknown function UPF0118 [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 345

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/353 (16%), Positives = 135/353 (38%), Gaps = 26/353 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFL----KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           + P  + +  ++F+I++  + +      + + VL A+ +           + K++ +   
Sbjct: 4   IKPGLLRQAFVIFLIILLGWLIFKEMATYLSGVLGAITLFVLMRKWQGHLVKKRKWNPGV 63

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A +   +   + ++P+  L      ++ + V                      G     
Sbjct: 64  AAGLLMTASFLVILLPIAGLVLMLSSKISKAVEN-------------------SGKVIDI 104

Query: 122 LWTKHLSHPQSLKILSETFLKTNGI-DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           L T+  S   S  +   + + T+ I +++            +  ++I  M   L++   +
Sbjct: 105 LKTELSSLEASFGMDLASSIDTSSITEWVSNNLQGLVGSTFNIFIAIGIMYFMLYYMLTN 164

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
             +  + L      L     K I +    +++S  +G+ ++A+ +G V    + + GV  
Sbjct: 165 RRTFRESLLEYIP-LSDKNLKLIGKDSVDLVKSNAIGIPLVALLQGAVALIGFLILGVED 223

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
                 I  + +MIP  G  +    V I L   G+++ +  L L+G I +   D   R  
Sbjct: 224 PFFWFAIVTVGSMIPFVGTALGVIPVCIILYAAGDVWQSIVLALYGIIVVGSTDNLFRLV 283

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           +      +  L T  G++ GV   G +GL  GP+++++  +I K       + 
Sbjct: 284 IQKRLADVHPLVTIIGVIVGVPLFGFIGLIFGPIVVSIFLLIVKIYKHEYGKE 336


>gi|237749317|ref|ZP_04579797.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229380679|gb|EEO30770.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 375

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 69/337 (20%), Positives = 142/337 (42%), Gaps = 16/337 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           + +       F + +  AL +     PI+   + K ++     A++ +   + + ++P++
Sbjct: 37  VFLCYLMTVPFLSSLAWALALAVLFMPIHRRILKKLKK-KNIAAMLTSALAIIIVVIPVM 95

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
           ++    +LE+    + ++     G      L  +P    A      HL+  Q++      
Sbjct: 96  WMVIRVVLEVDRGATLIMDRVSSG-EWQDNLESMPFVGRAVYWLENHLNIHQAV------ 148

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
               N   ++    + F        + I+     LF+F RD   I + +      L    
Sbjct: 149 ---NNLTSWLTAQVTLFLRSSFIQIIVIVLTFYLLFYFLRDRNEILRTVRRFSP-LCGRE 204

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GA 258
              + ++V   IR+T  G   ++  +G + G  +W+ G+P+ +  G I  I+++IP  G+
Sbjct: 205 TNGLFKVVNDTIRATVFGTLAVSAVKGFLSGFMFWVLGLPAPLLWGSIMGILSIIPLLGS 264

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            I +   ++YL + G    A  L +WG +   +V+  L P LV   +KL  +  F  L G
Sbjct: 265 YIIWIPAAVYLALDGYWAQALVLVIWGIVVGGVVNNVLYPILVSKKLKLHTIVAFIALAG 324

Query: 319 GVRTMGLLGLFIGPVLM---ALIAVIWKESIMAIKEN 352
           G+   G  G+ +GP+ +   A +  +W+      K +
Sbjct: 325 GILVYGASGVILGPITLTASAFLLHLWRLKATGYKRD 361


>gi|320352586|ref|YP_004193925.1| hypothetical protein Despr_0453 [Desulfobulbus propionicus DSM
           2032]
 gi|320121088|gb|ADW16634.1| protein of unknown function UPF0118 [Desulfobulbus propionicus DSM
           2032]
          Length = 360

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/335 (15%), Positives = 119/335 (35%), Gaps = 4/335 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L  F+  +  A  +     P YS   SK        A +    +     +PL++     
Sbjct: 27  VLWPFWNQLFVAFFLASIFHPAYSRLSSKT--RPWVAAALTCTLITLCVFLPLMYCIKSI 84

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             E+  ++      +   +      +          L    ++   +      T L T  
Sbjct: 85  SAEIPAVIQLGRRTDIFALLQQTLQNSTLIQRTGELLADFGINFEVANIPELMTRLLTTA 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
             F  R  S +    + +      +I+ ++F   +   ++  L  L   L  A  + +  
Sbjct: 145 GLFASRQVSTWATDIMRFFFDFCILIVCIYFLLIEYHRLTAFLLKLSP-LPEAQNRLLID 203

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTA 264
               +  +  +G  +  + +G++ G  +   G+ S V  GV+  ++A +P  G  +    
Sbjct: 204 KFSSIAGTILIGNGLSGLIQGVLGGIFFAAMGLVSPVLWGVVMGVLAFLPILGVGLVLLP 263

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            ++   +KG  + A    ++       ++   +P  VG   +LP +     ++GG+   G
Sbjct: 264 TTLIFFLKGKFWQAVVTLVFYLFLTVFIEYMFKPKFVGAQAQLPPILVLLSIIGGMSISG 323

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +LG+  GP+ +     +    +   +   +   SN
Sbjct: 324 VLGIIYGPLAVTAFLTLSDMYVREYQPYLDSRGSN 358


>gi|325300722|ref|YP_004260639.1| hypothetical protein Bacsa_3645 [Bacteroides salanitronis DSM
           18170]
 gi|324320275|gb|ADY38166.1| protein of unknown function UPF0118 [Bacteroides salanitronis DSM
           18170]
          Length = 331

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 120/326 (36%), Gaps = 33/326 (10%)

Query: 15  MIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +I+ I+ + +   +    +   +L    +        +   SK          I T+   
Sbjct: 10  LIILIVGLGILLFRQAQPYMNGILGGFTLYLLLRGFTNWLKSKI--KPLVAVWIVTIGTT 67

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              ++PL    +  + ++  L        +    +   +    G    SE          
Sbjct: 68  LFILIPLSLFSWAVVNQISNLHFDTADIIRPAQQMIDIIEKRTGFDVLSE---------- 117

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFL----DYCLSIIFMIIALFFFYRDGFSISQQ 187
                         + FI   AS  G   +    D  +++   I+ LFF   +G  + Q 
Sbjct: 118 ------------KNLSFIITQASSIGHSIMTGVSDLIINLAVAIMLLFFMLWEGDKMEQF 165

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  L         +++ + +  ++RS  +G+ ++AI +G +    Y L   P+ V   ++
Sbjct: 166 ISELLP-FEENNKREVLQKIQLIVRSNAIGIPLLAIIQGFISLFGYLLCHAPNPVLTAML 224

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T   +++P  G  + +  V+ Y  I G+  +   L  +G I +   D  +R  L      
Sbjct: 225 TGFASIVPLVGTALVWVPVTAYFFIIGDWVHGLILLAYGGIIISQCDNLIRFILQKKMAN 284

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGP 332
           +  L T FG+V G+   G +G+  GP
Sbjct: 285 IHPLITIFGVVAGLPIFGFMGIIFGP 310


>gi|282158796|gb|ADA78187.1| hypothetical protein NE061598_02800 [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 341

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 129/326 (39%), Gaps = 7/326 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  +  +  + L  F  P+L A ++     P+            +  + I  ++++   
Sbjct: 12  IICLVGALIGWVLYPFIYPILFAGLLAIILAPLQLYLEQHIGRHKS--SFIIVIAILLCI 69

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +PLL +  Y + E+   +      +Q    + + +++IP   +      +H  +  ++ 
Sbjct: 70  FIPLLIVLSYVITEIISYLQHSESLSQTFSQLSKSIANIP---YIGSTLQEHFDNLLNMV 126

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
              +  + +N    +P      G   +      +  ++ ++ F     S+ + L  +   
Sbjct: 127 NQDKDMIISNLGKILPTI-RYIGFTSVSLLTDFLITLLLVYQFLVSSTSLEKFLKKIILK 185

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F               R   L + + A+  G ++   + +  +PS +  G I AI +M+
Sbjct: 186 DFHDS-DSFISAAIATTRRVSLAIFLTAMLVGTMMTITFSMVDIPSPILFGFIAAIASMV 244

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I +  +   + +      A  + + G       D  ++P ++   +KL F+ +  
Sbjct: 245 PFMVGIIYILIGASVFVIYGATKAIIILIIGFSLNIFTDNIMQPKIINKQVKLSFVASLI 304

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAV 340
           G++GG+   G +G+F+GPV+  +  V
Sbjct: 305 GIMGGIHAFGFIGIFLGPVIFNVAFV 330


>gi|290509932|ref|ZP_06549302.1| hypothetical protein HMPREF0485_01702 [Klebsiella sp. 1_1_55]
 gi|289776648|gb|EFD84646.1| hypothetical protein HMPREF0485_01702 [Klebsiella sp. 1_1_55]
          Length = 366

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/339 (16%), Positives = 127/339 (37%), Gaps = 8/339 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I+ +          F   +L ALI+    +P++  F           +V+  +  + L 
Sbjct: 26  LILALASFCFTVFSPFINMMLWALILAVALYPLHQYFAGLLAGKQGLASVVLVLLGILLI 85

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
           ++P + +          ++ K+   +    P    ++ +P  G   S LW +       L
Sbjct: 86  VIPTVLMITSLAESASAMIDKMGSQSFTIPPPSSRIAALPIIGERLSALWMRASVDLPGL 145

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                + +      F+   AS  G   + + +S I   I + +    G + +     +  
Sbjct: 146 LSNYRSQIGDIAKQFLSILAS-MGGGLIGFIISFIVSGIMMAW----GAAGAISAQRIAI 200

Query: 194 HLFPAY-WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            +        ++R+    IR+   G+  +A+ + L++G    +A +P+     ++  I+ 
Sbjct: 201 RITDENKGVTLTRLCTSTIRAVAQGVIGVALIQALLVGVIMLMASIPAVGIFFILALILG 260

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNAT-CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           +      +        +   G         +    I   + D  L+P L+G  +  P   
Sbjct: 261 IAQVPVILVTAPAIALMWSLGTHSTGMDIFYTILMIVAGMADNVLKPLLLGRGVDAPMPV 320

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
              G +GG+ + G+LG+F+G  L+A+   I+   +   +
Sbjct: 321 VLLGALGGMASNGILGMFLGATLLAIGYRIFMTWVNEGQ 359


>gi|45358583|ref|NP_988140.1| hypothetical protein MMP1020 [Methanococcus maripaludis S2]
 gi|44921341|emb|CAF30576.1| Protein of unknown function UPF0118 [Methanococcus maripaludis S2]
          Length = 334

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 67/345 (19%), Positives = 140/345 (40%), Gaps = 21/345 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           + R  ++F     +Y L  F   +  A+ + + + P+Y     K     T+ A+I     
Sbjct: 9   LSRLFMVFSFFALIYMLWPFMGIIALAVAVAYMTKPLYDILKPKFG--RTYGAII----C 62

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +   ++P L L      ++   +  + + N      P            +++    +  P
Sbjct: 63  LLGIVIPSLLLVVLVAEDVVTFLLSLDIENIITKVTP----------ILNDIGYLRVDGP 112

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
              K  S+ +  +     +  FAS+         + ++F+    F+F +DG  ++     
Sbjct: 113 DVSKPFSDIW--SVSKPLLNSFASQI-SSIPSLLMKLLFLSFMTFYFLKDGDKLTDSFLI 169

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                           + K +++ F+G  + ++  G++    YWL G+P+ + LG ++ I
Sbjct: 170 YVPEDKKRNTALFLSEIHKALKTLFIGNAVTSVIVGIISIIGYWLIGIPNPITLGALSGI 229

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIKLP 308
           + ++P  G    +  +++Y L+ G I     L L+G I L +  D  +RP ++     L 
Sbjct: 230 LNILPVVGGWTIYVPLTVYYLLTGEIAKGILLGLFGIIFLSLAPDFAIRPRVISKDGDLH 289

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                   + G    G+ GL IGP+++A +  I K   +  K+N 
Sbjct: 290 PALVLIAFLIGPLVFGIPGLAIGPIIVATVYAIHKVRRLIEKKNN 334


>gi|300710665|ref|YP_003736479.1| hypothetical protein HacjB3_06480 [Halalkalicoccus jeotgali B3]
 gi|299124348|gb|ADJ14687.1| hypothetical protein HacjB3_06480 [Halalkalicoccus jeotgali B3]
          Length = 325

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 69/328 (21%), Positives = 134/328 (40%), Gaps = 18/328 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           M  +I     +SL  +  F   VL A++I +   P+Y   +       T  A+    +  
Sbjct: 1   MLVVIGAFGTLSLAIVWPFRQYVLLAVLIAYLLTPVYRRLVPVTG--ETGGALALMGAAT 58

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + I+P   L      +  +L  ++  ++     V   ++                +  +
Sbjct: 59  GVVILPFAALLSVVASDALDLAQRLSDSDIDLEEVESVIA--------------ASTGRE 104

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                +      N    +   AS    +F    + I      LFFF RDG   ++ L  +
Sbjct: 105 VDLSTTLGTAGENFAGVLVGNASDLVGVFTHALIGITLSAFLLFFFLRDGRYFTEWLFEV 164

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L      +++  V  ++ +  +G  +++  +GL+ G    + G+P+ V   V   ++
Sbjct: 165 TP-LPDVVLGELATNVDDLMWAVLVGHVLVSAIQGLLAGIGLAVTGIPNAVFWTVAMMLL 223

Query: 252 AMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           A++P  GA + +   ++YL+  G+      LFL+G   + + D  LR  LV    +L   
Sbjct: 224 ALLPVVGAFLVWGPAAVYLVALGDPVAGGGLFLYGMTVVGLSDNYLRSILVDRRAQLNPA 283

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALI 338
               G+VGG+  +G++GLF GPV++   
Sbjct: 284 TIMLGVVGGLYLLGVMGLFFGPVIVGSF 311


>gi|260771830|ref|ZP_05880748.1| hypothetical protein VIB_000268 [Vibrio metschnikovii CIP 69.14]
 gi|260613122|gb|EEX38323.1| hypothetical protein VIB_000268 [Vibrio metschnikovii CIP 69.14]
          Length = 285

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 64/280 (22%), Positives = 118/280 (42%), Gaps = 12/280 (4%)

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHG-----IPVPRWLSDIPGGMWASELWTKHLSHP 130
           +P + +F   + +       +      G     +  P  +  +    + ++    H   P
Sbjct: 2   IPSILVFSAIVQQGARFAQTLYHWGNEGGIQTALSHPLIIKTL---TFTNQYLPFHEVTP 58

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           Q +   +  F  + G   +   A   G +     ++   M+  LFF  RD   I   L  
Sbjct: 59  QQIAQKTAQFATSFGSSLVAISAKIVGDVT-HLVMNFFLMLFVLFFLLRDHDKIINVLRH 117

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +   L  +   K+   + +V +S  +G  + AI +G+  G A WL G+P  +  G +   
Sbjct: 118 ILP-LSRSQEDKLLHEIQQVSKSAIMGSFLTAIAQGVAGGLAMWLVGLPG-LFWGTMMGF 175

Query: 251 MAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            + IP  G  + +   ++YLL+ G+   A  L +W    +  +D  LRP L+ G   +  
Sbjct: 176 ASFIPLIGTALIWIPATLYLLVIGDTAWALFLLIWSIAIVGSIDNLLRPLLMQGSAGMNT 235

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           L  FF L+GG++  GL+GL  GP++ A+  V++       
Sbjct: 236 LMIFFSLLGGIQLFGLIGLIYGPLIFAITIVLFNLYEEEF 275


>gi|222445339|ref|ZP_03607854.1| hypothetical protein METSMIALI_00967 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434904|gb|EEE42069.1| hypothetical protein METSMIALI_00967 [Methanobrevibacter smithii
           DSM 2375]
          Length = 348

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 137/333 (41%), Gaps = 9/333 (2%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
           +SL  +      V+   I+ +   P+     SK +  S     ++    + L ++PL+ L
Sbjct: 22  ISLMIVSPVLNMVILGAILAYAIRPLARKITSKIKIRS-----VSIFLAVILVMIPLVIL 76

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
             Y +  +  ++S V++ N  G  +   L  +   M  S           +    S +  
Sbjct: 77  IAYIISVISGVLSDVLVVNPSGFNLN--LDTVINQMVNSLPADISSGIDTASIKSSLSGF 134

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             +  + +  +        L   + +  +  ++++F RDG +    ++S        +++
Sbjct: 135 IKDIGNVVLDYIVSLASKLLSISVDLFILFASIYYFIRDGDNCYDFVESFIPQESKDFFE 194

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPI 260
           +    V +V++S F G  + ++  G++    Y L G    V LGV+T I  +IP  G   
Sbjct: 195 RTVNSVKEVLKSIFYGHFLTSLIIGIIAAVGYSLLGYSQGVFLGVLTGIFQLIPIFGPWP 254

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +  ++I  LI GN      + L+G   L + D  +RP L      +  L    G + G 
Sbjct: 255 IYWTLAIIDLISGNYVRVVIVILFGFF-LSLSDMYIRPALSSHYADIHPLILLIGFLAGP 313

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              G++G  +GP+++ +   +     + + ++K
Sbjct: 314 LVYGIVGFILGPLILGITYAVLDNFRIELNKSK 346


>gi|148643102|ref|YP_001273615.1| permease [Methanobrevibacter smithii ATCC 35061]
 gi|148552119|gb|ABQ87247.1| predicted permease [Methanobrevibacter smithii ATCC 35061]
          Length = 348

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 137/333 (41%), Gaps = 9/333 (2%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
           +SL  +      V+   I+ +   P+     SK +  S     ++    + L ++PL+ L
Sbjct: 22  ISLMIVSPVLNMVILGAILAYAIRPLARKITSKIKIRS-----VSIFLAVILVMIPLVIL 76

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
             Y +  +  ++S V++ N  G  +   L  +   M  S           +    S +  
Sbjct: 77  IAYIISVISGVLSDVLVVNPSGFNLN--LDTVINQMVNSLPADISSGIDTASIKSSLSGF 134

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             +  + +  +        L   + +  +  ++++F RDG +    ++S        +++
Sbjct: 135 IKDIGNVVLDYIVSLASKLLSISVDLFILFASIYYFIRDGDNCYDFVESFIPQESKDFFE 194

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPI 260
           +    V +V++S F G  + ++  G++    Y L G    V LGV+T I  +IP  G   
Sbjct: 195 RTVNSVKEVLKSIFYGHFLTSLIIGIIATVGYSLLGYSQGVFLGVLTGIFQLIPIFGPWP 254

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +  ++I  LI GN      + L+G   L + D  +RP L      +  L    G + G 
Sbjct: 255 IYWTLAIVDLISGNYVRVVIVILFGFF-LSLSDMYIRPALSSHYADIHPLILLIGFLAGP 313

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              G++G  +GP+++ +   +     + + ++K
Sbjct: 314 LVYGIVGFILGPLILGITYAVLDNFRIELNKSK 346


>gi|57641584|ref|YP_184062.1| hypothetical protein TK1649 [Thermococcus kodakarensis KOD1]
 gi|57159908|dbj|BAD85838.1| hypothetical membrane protein, conserved, DUF20 family
           [Thermococcus kodakarensis KOD1]
          Length = 345

 Score =  133 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 70/360 (19%), Positives = 136/360 (37%), Gaps = 31/360 (8%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M     +   +I  I+ VS   +  F  P+   LI+ +  +PI+           +   +
Sbjct: 1   MRAETAVWAAVIAVILYVSWRVILPFLEPLFFGLILAYAFYPIHRRLRKFVGNRESAAFI 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI-PVPRWLSDIPGGMWASELW 123
             T  V          L      E+  +  K+  +    I  V  W+  +P    A    
Sbjct: 61  SFTFLV----------LGGTLTFELAMMSLKLASSFAGSIRDVINWILTLPLPEDARTFI 110

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                            +K      I  + S        Y + +    +A ++       
Sbjct: 111 LN---------------IKAEATTRIAEYVSSRAFSIPLYVIQLTVFFLAFYYGLAYSEQ 155

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP---S 240
           I++ +  L         ++I   V K + +      ++ + +G+++   Y + GV    +
Sbjct: 156 IARTIRELLPEENRELGEEILTSVHKTLSALVRAWLLLNVAKGILMTLGYIVFGVSDVYT 215

Query: 241 HVALGVITAIMAMIPGG-APISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRP 298
            V  G +T   + +P     + + A +IY  + G   +A  + ++GA  +  + D T+RP
Sbjct: 216 AVIAGFLTFAFSFVPLFEGWMIWLAAAIYFALNGMYLHAIGISVYGAFLVSPMPDYTIRP 275

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            LV    +L     F G+VGG   MGL G+ IGP+++ ++ V+ KE     + + +  SS
Sbjct: 276 MLVARDTELDETLVFIGMVGGTWAMGLKGIIIGPIVLNVLLVLIKEWKKLTESSHQLSSS 335


>gi|261350100|ref|ZP_05975517.1| conserved hypothetical protein [Methanobrevibacter smithii DSM
           2374]
 gi|288860886|gb|EFC93184.1| conserved hypothetical protein [Methanobrevibacter smithii DSM
           2374]
          Length = 348

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 137/333 (41%), Gaps = 9/333 (2%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
           +SL  +      V+   I+ +   P+     SK +  S     ++    + L ++PL+ L
Sbjct: 22  ISLMIVSPVLNMVILGAILAYAIRPLARKITSKIKIRS-----VSIFLAVILVMIPLVIL 76

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
             Y +  +  ++S V++ N  G  +   L  +   M  S           +    S +  
Sbjct: 77  IAYIISVISGVLSDVLVVNPSGFNLN--LDTVINQMVNSLPADISSGIDTASIKSSLSGF 134

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             +  + +  +        L   + +  +  ++++F RDG +    ++S        +++
Sbjct: 135 IKDIGNVVLDYIVSLASKLLSISVDLFILFASIYYFIRDGDNCYDFVESFIPQESKDFFE 194

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPI 260
           +    V +V++S F G  + ++  G++    Y L G    V LGV+T I  +IP  G   
Sbjct: 195 RTVNSVKEVLKSIFYGHFLTSLIIGIIAAVGYSLLGYSQGVFLGVLTGIFQLIPIFGPWP 254

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +  ++I  LI GN      + L+G   L + D  +RP L      +  L    G + G 
Sbjct: 255 IYWTLAIVDLISGNYVRVVIVILFGFF-LSLSDMYIRPALSSHYADIHPLILLIGFLAGP 313

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              G++G  +GP+++ +   +     + + ++K
Sbjct: 314 LVYGIVGFILGPLILGITYAVLDNFRIELNKSK 346


>gi|167623922|ref|YP_001674216.1| hypothetical protein Shal_1993 [Shewanella halifaxensis HAW-EB4]
 gi|167353944|gb|ABZ76557.1| protein of unknown function UPF0118 [Shewanella halifaxensis
           HAW-EB4]
          Length = 360

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 80/341 (23%), Positives = 137/341 (40%), Gaps = 6/341 (1%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
           V    +  +   ++   I+     PI++    +   S    +V +   V  + ++PLLF+
Sbjct: 23  VCYLLISPYLGSIVLGFIVSILFLPIHTRIQHRMPNSPNMASVFSCTLVTVMVLIPLLFV 82

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLKILSET 139
               M E    ++        G     +L+   I  G+     W    S      +    
Sbjct: 83  AMAIMNEGINFMTNAYEWLTGGGA-KSFLAHPYIQSGVALLNKWLPFDSIKIDELVQQAA 141

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
              T         ++       D  L    M+  LFFF RD   I      +   L  + 
Sbjct: 142 GKVTQLSTSFLSASTGIAGDVADTFLDFGLMLFVLFFFLRDQEKIIDNTRHIIP-LSRSQ 200

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GA 258
              I   V  V +S  LG  + A+ +G++ G A  LAG    +  G + A  + IP  G 
Sbjct: 201 QGLIFNEVGVVAKSAVLGAFLTALAQGVLGGIAMSLAGFSG-LFWGSMMAFASFIPFVGT 259

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            + +   SIYL I G+   A  + +WG + +  +D  LRP+L+ G   +  L  FF L+G
Sbjct: 260 AMIWLPASIYLFITGDWQWAIFMMVWGVVVVGSIDNFLRPWLMQGNTGMSTLLLFFSLLG 319

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G++  GL+GL  GP++ A+  V+ +   +  K+  E+    
Sbjct: 320 GLQLFGLIGLIYGPIIFAVTLVLARLYEIEFKDFIEQQDKE 360


>gi|56707640|ref|YP_169536.1| hypothetical protein FTT_0501c [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670111|ref|YP_666668.1| hypothetical protein FTF0501c [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456709|ref|ZP_03665182.1| hypothetical protein FtultM_02652 [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370155|ref|ZP_04986161.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874457|ref|ZP_05247167.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604132|emb|CAG45134.1| conserved hypothetical membrane protein [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110320444|emb|CAL08517.1| conserved hypothetical membrane protein [Francisella tularensis
           subsp. tularensis FSC198]
 gi|151568399|gb|EDN34053.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840456|gb|EET18892.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis MA00-2987]
          Length = 346

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 129/326 (39%), Gaps = 7/326 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  +  +  + L  F  P+L A ++     P+            +  + I  ++++   
Sbjct: 17  IICLVGALIGWVLYPFIYPILFAGLLAIILAPLQLYLEQHIGRHKS--SFIIVIAILLCI 74

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +PLL +  Y + E+   +      +Q    + + +++IP   +      +H  +  ++ 
Sbjct: 75  FIPLLIVLSYVITEIISYLQHSESLSQTFSQLSKSIANIP---YIGSTLQEHFDNLLNMV 131

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
              +  + +N    +P      G   +      +  ++ ++ F     S+ + L  +   
Sbjct: 132 NQDKDMIISNLGKILPTI-RYIGFTSVSLLTDFLITLLLVYQFLVSSTSLEKFLKKIILK 190

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F               R   L + + A+  G ++   + +  +PS +  G I AI +M+
Sbjct: 191 DFHDS-DSFISAAIATTRRVSLAIFLTAMLVGTMMTITFSMVDIPSPILFGFIAAIASMV 249

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I +  +   + +      A  + + G       D  ++P ++   +KL F+ +  
Sbjct: 250 PFMVGIIYILIGASVFVIYGATKAIIILIIGFSLNIFTDNIMQPKIINKQVKLSFVASLI 309

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAV 340
           G++GG+   G +G+F+GPV+  +  V
Sbjct: 310 GIMGGIHAFGFIGIFLGPVIFNVAFV 335


>gi|317485026|ref|ZP_07943908.1| permease [Bilophila wadsworthia 3_1_6]
 gi|316923561|gb|EFV44765.1| permease [Bilophila wadsworthia 3_1_6]
          Length = 353

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 62/343 (18%), Positives = 117/343 (34%), Gaps = 4/343 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            + R +    I   ++ L  F      A  +   ++P Y     K   S ++     TV 
Sbjct: 14  SMTRVLACLAIGAWVFLLWPFPITTFMATCMACVTYPAYRKLHRKM--SPSWAMTTYTVG 71

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +  + I+P+  +      +    +  +      G             + A       L  
Sbjct: 72  LAAITILPIATVVSLVTPQAVAGLKILDGLRDSGWIHSPEAQAWFASVDAWLKNLPGLEG 131

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                  +   L       +               L +   ++           I +   
Sbjct: 132 GLDQLASTAAGLAGTAARTVLAGGVGIAGGAFQAVLVLFLFVMITMMCVTRADLIHEFAC 191

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L +        +    + K I    +G+  +A+ +G + G  + +A VP     G+I A
Sbjct: 192 RLTQ-WPAEVIDRFVSTIRKAIFGVLVGVVFVALIQGFLCGVGFAIAEVPQPAFWGLIAA 250

Query: 250 IMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            +A IP  G  + +  V I+L + G+      L +W A+ +  VD  LRPF +   I   
Sbjct: 251 FVAPIPFVGTALVWLPVCIWLWLTGSTVACIGLAIWCALVVAGVDNLLRPFFLKTGIDAS 310

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            +     ++ G+   G +G+F GPVL+A+      ES +  K 
Sbjct: 311 VVTLILSILCGLAAFGPVGVFAGPVLVAVAIQAGNESTLCRKH 353


>gi|269962623|ref|ZP_06176969.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832660|gb|EEZ86773.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 382

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 57/330 (17%), Positives = 113/330 (34%), Gaps = 5/330 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            I++V  +    F   +L AL++    +P+      K   SS   A +  +  + +   P
Sbjct: 28  LIVIVCWWAFLPFLPILLWALVLAIALYPVKLVIERKLGLSSARAATLIAIIGVLILGTP 87

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKIL 136
              +      +                     +   P  G     +W +           
Sbjct: 88  TAMVGNSFASKTLGAFESYRDGTLVITKPADSVKTWPLVGEKVHAVWFEAADDLPEFIEK 147

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +  +K     F+   AS           +II   + L +      SI +   S  +   
Sbjct: 148 RQPQIKGFFGWFVDT-ASGAAKSVFMLIGAIIIAGVMLAWAQPAAKSIRKIFISFADE-- 204

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
            A   ++  +    IR   +G+  IA    +  G+   L+GVP      +I  I A++  
Sbjct: 205 -ARGTELHELTTATIRQVAVGIIGIAFLTAMAFGAVVALSGVPGAALFTLIALIFAIVQL 263

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
              +        L    +      +F    I   ++D  L+P ++G  + +P      G 
Sbjct: 264 PVTLIALVTIGLLWSGDSGTIHNVIFTVLLIAASLIDNFLKPLILGRGLDVPMPIVLIGA 323

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           +GG+ + G+LG+FIG   +A    ++ + +
Sbjct: 324 IGGMMSGGILGMFIGAAFLAAGYQVFMKWV 353


>gi|269468325|gb|EEZ80001.1| permease [uncultured SUP05 cluster bacterium]
          Length = 356

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 77/356 (21%), Positives = 145/356 (40%), Gaps = 18/356 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G M  +++  I   ++    F   +  AL+I   ++  Y     K   SS+  A++ T+ 
Sbjct: 8   GFMLTLLILAIAGLIWLFTPFIPALFLALLIAIATFSQYIKLQKKISNSSS--ALLMTLL 65

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V  + I+PL ++     LE+  L+  +             L  I G   +  L     S 
Sbjct: 66  VTVVLILPLSYILLISGLEISALIQNINTNFTVEQSNQLLLQTITGLPLSDSLKVTLNSA 125

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             +        +K    DF          +   +   +I  I +L++FY DG S  ++L 
Sbjct: 126 LSNNLENFIINIK----DFSVVILKSIVSLSSHFIFFLIITIFSLYYFYIDGKSTVKRLK 181

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L   L       +      +  +    + +IAI +GL+      + G+P  +  G+  A
Sbjct: 182 DLSP-LENHLDDILFNQFSSLSITLVGSVLVIAILQGLIFSIGVMMIGLP-VLFFGIAMA 239

Query: 250 IMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLVGGPIKL 307
           + + IP  G  I +  +S+YL  +G   +A  +  +GA+ +  I+D  +RP ++    + 
Sbjct: 240 LASFIPVLGGLIIWLPLSLYLYAQGQTTDALIIVFFGAVIIGTIIDHFIRPMVIKKFSQS 299

Query: 308 --------PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                     L T    + G+   G+LGLFIGP++ A+   I+    +    + +K
Sbjct: 300 SNQSSALDHTLITVLSTLAGIMQFGILGLFIGPIIAAMAISIFDVYAIKYAGSLDK 355


>gi|206579747|ref|YP_002240299.1| hypothetical protein KPK_4500 [Klebsiella pneumoniae 342]
 gi|288937004|ref|YP_003441063.1| hypothetical protein Kvar_4154 [Klebsiella variicola At-22]
 gi|206568805|gb|ACI10581.1| putative membrane protein [Klebsiella pneumoniae 342]
 gi|288891713|gb|ADC60031.1| conserved hypothetical protein [Klebsiella variicola At-22]
          Length = 366

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 56/339 (16%), Positives = 127/339 (37%), Gaps = 8/339 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I+ +          F   +L ALI+    +P++  F           +V+  +  + L 
Sbjct: 26  LILALASFCFTVFSPFINMMLWALILAVALYPLHQYFAGLLAGKQGLASVVLVLLGILLI 85

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
           ++P + +          ++ K+   +    P    ++ +P  G   S LW +       L
Sbjct: 86  VIPTVLMITSLAESASAMIDKMGSQSFTIPPPSSRIAALPIIGERLSALWMRASVDLPGL 145

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                + +      F+   AS  G   + + +S I   I + +    G + +     +  
Sbjct: 146 LSNYRSQIGDIAKQFLSILAS-MGGGLIGFIISFIVSGIMMAW----GAAGAISAQRIAI 200

Query: 194 HLFPAY-WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            +        ++R+    IR+   G+  +A+ + L++G    +A +P+     ++  I+ 
Sbjct: 201 RITDENKGVTLTRLCTSTIRAVAQGVIGVALIQALLVGVIMLMASIPAVGIFFILALILG 260

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNAT-CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           +      +        +   G         +    I   + D  L+P L+G  +  P   
Sbjct: 261 IAQVPVILVTAPAIALMWSLGTHSTGMDIFYTILLIVAGMADNVLKPLLLGRGVDAPMPV 320

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
              G +GG+ + G+LG+F+G  L+A+   I+   +   +
Sbjct: 321 VLLGALGGMASNGILGMFLGATLLAIGYRIFMTWVNEGQ 359


>gi|307626825|gb|ADN71129.1| putative inner membrane protein [Escherichia coli UM146]
          Length = 201

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 83/187 (44%), Gaps = 1/187 (0%)

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
           M++     Y  G  ++Q +      L          +  + IR+  LG+ + A+ + ++ 
Sbjct: 1   MLLFSALLYWRGEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLG 60

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
           G    ++GVP    L V+  +  ++  G         I+L   G+    T L +W    +
Sbjct: 61  GIGLAVSGVPYATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSG-VV 119

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
             +D  +RP L+     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  +
Sbjct: 120 GTLDNVIRPMLIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEV 179

Query: 350 KENKEKI 356
               ++ 
Sbjct: 180 PPPTDQP 186


>gi|254877432|ref|ZP_05250142.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843453|gb|EET21867.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 339

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 125/326 (38%), Gaps = 7/326 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  I  + ++ L  F   +L A ++     P+         +  +  + +  + ++   
Sbjct: 11  IICIIGALVMWVLYPFIYSILFAGLLAIILAPLQEYLEQHIGKHRS--SFLLVMGILLCV 68

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +P+L + YY + E+   +      +Q    +   +  IP   +   +  +HL       
Sbjct: 69  FIPILIVLYYAISEIVSYLQHPETLSQTFATLGDSIGKIP---YIGSILQEHLDKLIKAI 125

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                 + +N    +P+     G   + +    +  ++ ++ F     ++ +    +   
Sbjct: 126 NDDSDTIISNLGQILPKV-RYVGSTSISFITDFLITLLLVYQFLVSSSTLEKFAKKVVLK 184

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F               R   L + + A   G V+   + L G+P+ + L    AI +MI
Sbjct: 185 DFDDS-DSFISTAIITTRRVSLAIFLTASLVGTVMAITFLLTGMPTPILLAFTVAIASMI 243

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I +  +   + +      A  + + G       D  ++P ++   ++L F  +  
Sbjct: 244 PFMVGIVYILIGASVFVVYGATKAIIILVVGFALNIFTDNIMQPKIINKQVQLSFAASLI 303

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAV 340
           G++GG++  G +G+F+GPV+  +  V
Sbjct: 304 GILGGIQAFGFIGIFLGPVIFNVTFV 329


>gi|326798185|ref|YP_004316004.1| hypothetical protein Sph21_0757 [Sphingobacterium sp. 21]
 gi|326548949|gb|ADZ77334.1| protein of unknown function UPF0118 [Sphingobacterium sp. 21]
          Length = 347

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 64/342 (18%), Positives = 124/342 (36%), Gaps = 20/342 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
                 I   +I+ +    LY L+G F  +L+ +I+      +      + +   +  AV
Sbjct: 8   QKQRNNITLVIIVVLGAFILYSLRGIFGALLATMIMYTIFRSLNLYLTEQLKWRKSISAV 67

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  ++   + + P   L       + EL              P  +  +      +    
Sbjct: 68  LIIIASFFIIVFPFYGLINMIAKRVIELTKH-----------PDKIQRV--IDEINRFLG 114

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L  P  +    +      G+ +     +       +  L I  M   L+F +      
Sbjct: 115 DKLQQPDLITNNLQR-----GVAYAGNLMTSILSGAANILLDISVMYFLLYFLFVGCREF 169

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + +             +    +  +  S  LG  +IA+ +G  +   YW+      +  
Sbjct: 170 EKGVLRYSP-FSDENAIRFGVELRNITYSNVLGQGLIAVIQGGAVAFGYWMFDFADPLFW 228

Query: 245 GVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           GVI  I++ IP  GAP+ F    I   I G+ FNA  + LWG + +  +D  LR  +   
Sbjct: 229 GVICVILSFIPVVGAPMVFIPACIIKFIDGDTFNAIAMLLWGILLVSNIDNVLRLVIAKR 288

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
              +  + T  G++ G+   G++GL  GP+L++   +  K  
Sbjct: 289 VGDIHPIITIVGVIIGIPMFGIMGLVFGPLLLSYFLITVKIY 330


>gi|298524597|ref|ZP_07012006.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308378833|ref|ZP_07484018.2| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
 gi|298494391|gb|EFI29685.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308359074|gb|EFP47925.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
          Length = 350

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 55/317 (17%), Positives = 112/317 (35%), Gaps = 7/317 (2%)

Query: 37  ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV 96
           A +  +   P++  F  +   ++   A    +S +   +VP+  L    ++++  +V  V
Sbjct: 3   AAVGAYLFTPLFKWFTKRF--NTGLSAACTLLSALAAVVVPVGALVGLAIVQIARMVDSV 60

Query: 97  VLA--NQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFAS 154
                      +   +     G++    +        +L+    +  +  G   +  F  
Sbjct: 61  ADWVRTTDLSTLGDKILQFVNGLFDRVPFLHITVTADALRKAMISVAQNVGEWLLH-FLR 119

Query: 155 RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRST 214
                      S I  +        +   +   +  L   L         + +  ++R T
Sbjct: 120 DAAGSLAGVITSAIIFVYVFVALLVNREKLRTLIGQLNP-LGEDVTDLYLQKMGSMVRGT 178

Query: 215 FLGMTIIAIGEGLVLGSAYWLAGVPSHVA-LGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
             G  +IA  +G+   ++ ++AG         ++   +++IP G  I      I ++  G
Sbjct: 179 VNGQFVIAACQGVAGAASIYIAGFHHGFFIFAIVLTALSIIPLGGGIVTIPFGIGMIFYG 238

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
           NI     + LW  + +  +D  LRP LV    +L        +  G+   G  G+ IGPV
Sbjct: 239 NIAGGIFVLLWHLLVVTNIDNVLRPILVPRDARLNSALMLLSVFAGITMFGPWGIIIGPV 298

Query: 334 LMALIAVIWKESIMAIK 350
           LM LI       +   K
Sbjct: 299 LMILIVTTIDVYLAVYK 315


>gi|319953361|ref|YP_004164628.1| hypothetical protein Celal_1829 [Cellulophaga algicola DSM 14237]
 gi|319422021|gb|ADV49130.1| protein of unknown function UPF0118 [Cellulophaga algicola DSM
           14237]
          Length = 342

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 55/327 (16%), Positives = 119/327 (36%), Gaps = 21/327 (6%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +  + + VL A+             + +   +S     +  +  +   ++P+  +     
Sbjct: 29  MLPYLSGVLGAITFYVLLRKPMGKLVKR-GWNSDLAVSVLLIGSVIGILIPVGGIILMLA 87

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            +++  V+                  I         W   + +  + KI +         
Sbjct: 88  NKIENTVAHSEDV-------------IKASKKQLGTWEDKIGYDLTSKIDASAV-----S 129

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
            +I      F     +  +++  M   L++   +   + + L      +     K I + 
Sbjct: 130 SWISDSLQSFAGGTFNILIALGLMYFMLYYMLTNRRQLRESLYEYIP-IGNDNLKIIGKD 188

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAV 265
           V  ++RS  LG+ ++A  +G+V    + +  +       VI  + +MIP  G  I    V
Sbjct: 189 VQAMVRSNALGIPLVAFAQGIVALIGFLIFNIEQPFFWAVIVFVGSMIPFIGTFIGTLPV 248

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            I  L  GN F A  + ++G + +   D  LR  ++     +  L T  G++ GV   G 
Sbjct: 249 FILTLASGNDFQAWGILIYGLVVIGSTDNLLRLVILKRIDNVHPLITLIGVIVGVPLFGF 308

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKEN 352
           +GL  GP+L++L  ++ +       + 
Sbjct: 309 IGLIFGPLLISLFLIVLRIYKDEYGQE 335


>gi|241668900|ref|ZP_04756478.1| hypothetical protein FphipA2_09034 [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 320

 Score =  132 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 51/316 (16%), Positives = 120/316 (37%), Gaps = 7/316 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + L  F   +L A ++     P+         +  +  + +  + ++    +P+L + YY
Sbjct: 2   WVLYPFIYSILFAGLLAIILAPLQEYLEQHIGKHRS--SFLLVMGILLCVFIPILIVLYY 59

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + E+   +      +Q    +   +  IP   +   +  +HL             + +N
Sbjct: 60  AISEIVSYLQHPETLSQTFATLGDSIGKIP---YIGSILQEHLDKLIKAINDDSDTIISN 116

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               +P+     G   + +    +  ++ ++ F     ++ +    +    F        
Sbjct: 117 LGQILPKV-RYVGSTSISFITDFLITLLLVYQFLVSSSTLEKFAKKVVLKDFDDS-DSFI 174

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
                  R   L + + A   G V+   + L G+P+ + L    AI +MIP    I +  
Sbjct: 175 STAIITTRRVSLAIFLTASLVGTVMAITFLLTGMPTPILLAFTVAIASMIPFMVGIVYIL 234

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           +   + +      A  + + G       D  ++P ++   ++L F  +  G++GG++  G
Sbjct: 235 IGASVFVVYGATKAIIILVVGFALNIFTDNIMQPKIINKQVQLSFAASLIGILGGIQAFG 294

Query: 325 LLGLFIGPVLMALIAV 340
            +G+F+GPV+  +  V
Sbjct: 295 FIGIFLGPVIFNVTFV 310


>gi|330946225|gb|EGH47411.1| hypothetical protein PSYPI_36155 [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 226

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 94/205 (45%), Gaps = 7/205 (3%)

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSL 133
            PL++L +     +++    +      G+P  P+WL+ IP  G     LWT       + 
Sbjct: 5   APLVWLGFNLADHVRDATGLIKDIQVDGLPDPPQWLAGIPLVGERLVALWTTIDQQGAAF 64

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
               +  L   G   + R A + G   L+  LSI+F     FFFYRDG  ++  + SL E
Sbjct: 65  MATLKPHLGQVGNWILARSA-QIGSGILELTLSIVFA----FFFYRDGPRLAAFVLSLLE 119

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            L     +    +V   ++    G+   A  + ++    + +AG+P  + LG++T + ++
Sbjct: 120 RLIGERAQYYLDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALVLGILTFLFSL 179

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNA 278
           IP G P+ +   + +L+ +G + + 
Sbjct: 180 IPMGPPLVWLPATAWLVWQGGVRHG 204


>gi|330508908|ref|YP_004385336.1| hypothetical protein MCON_3236 [Methanosaeta concilii GP-6]
 gi|328929716|gb|AEB69518.1| protein of unknown function (DUF20) [Methanosaeta concilii GP-6]
          Length = 408

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 65/370 (17%), Positives = 129/370 (34%), Gaps = 21/370 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             +   +++ + + ++Y  K F AP+L +    F   P+YS             A ++ +
Sbjct: 8   NLLASAVLLIVFISTVYVTKAFIAPLLLSFFFAFVLLPVYSRIY-CLTGRKNLSAFMSLL 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSK------------VVLANQHGIPVPRWLSDIPGG 116
            V+  F++ L         E   L S                  +    +   L+++   
Sbjct: 67  LVVLFFMIFLSSALNAIATETSGLFSSQEDIVQSIDIYITQKTEESFDTLHVVLNNLVSE 126

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD----YCLSIIFMII 172
             A E   +     +         + ++ +  I   A+     F+             I+
Sbjct: 127 STADETVERLREMVRPFIEAPRDRILSDLLPQIAFEATNLATGFISELPVLMSQFFVAIM 186

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
             ++    G S  +    +               + K+  + F    + ++  GL+    
Sbjct: 187 ITYYLLIGGSSAVKGFLLILPE--RELMNYFMGELNKIYNNLFNVYLLTSLITGLLAAIG 244

Query: 233 YWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
           + L GV      G+ TAI A++P  G PI F  + IY L+ GN  +   LF++  I +  
Sbjct: 245 FALFGVSYPFLWGLTTAIFALLPMIGPPIIFVPICIYFLLIGNYLSGIGLFIYSLIFINT 304

Query: 292 V-DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           + +  +RP L     K+    T       +  +G LG  IGP+L   +   ++  +  +K
Sbjct: 305 IPENVIRPKLASQGAKIHPSITLLAFAAPIFVVGFLGFIIGPLLYGFLLAAFRTRVYMLK 364

Query: 351 ENKEKISSNF 360
           E         
Sbjct: 365 EEGAIDEKEL 374


>gi|152992929|ref|YP_001358650.1| hypothetical protein SUN_1340 [Sulfurovum sp. NBC37-1]
 gi|151424790|dbj|BAF72293.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 359

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 64/340 (18%), Positives = 128/340 (37%), Gaps = 8/340 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  ++ +S    K F A  +  +II     P+ +    +       +  I TV V+   
Sbjct: 22  IIALVVYLSYLIAKPFMAVTVWGIIIAVGIAPLVNMLEKRFGHRKKIIIAI-TVMVIAGL 80

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQSL 133
           I+P   L    +   ++++  +        P    + + P  G     LW       +  
Sbjct: 81  ILPTYALSGKTIETSEKIIHSMKDGEITIPPPTEKVKEWPVIGEKTYTLWNNASHDLKKT 140

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                  +K      +       G +F+      +  ++    F        +    L  
Sbjct: 141 LKPFSKEIKNGITALLSSLGGLIGTVFM-----FVVSMLIAAAFLIGSEGAVKFYKDLSR 195

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            L        +++    +RS   G+  +AI + +       L GVP  +   VI   + +
Sbjct: 196 RLMGDKGNDWAKLSTLTVRSVVNGVLGVAIIQAIFALIGLTLMGVPLAIVWAVIIMFLTI 255

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           I   A I    + +Y+  +G+        ++  + +   D  L+P L+G  + +P L   
Sbjct: 256 IQLPALIIILPIILYVFSQGSGTAEVVFTIY-MLIVGASDGVLKPMLMGRGVDVPMLVIL 314

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            G +GG+  MG++GLF+G V+ AL   ++   I  +KE++
Sbjct: 315 IGAIGGMMLMGMIGLFVGAVIFALAYTLFGFWIAEVKEDE 354


>gi|284037625|ref|YP_003387555.1| hypothetical protein Slin_2741 [Spirosoma linguale DSM 74]
 gi|283816918|gb|ADB38756.1| protein of unknown function UPF0118 [Spirosoma linguale DSM 74]
          Length = 355

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 62/335 (18%), Positives = 134/335 (40%), Gaps = 20/335 (5%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           +Y L G+ +  L A I+     P +++   K+  + + +  +  +  + + I+P L L  
Sbjct: 26  IYGLSGYISAFLGAGILYVVFRPWFTALAIKRHWNKSLVTTLLIIFSIVVIIMPFLTLSL 85

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             +        ++   +QH   +                  + L+  Q     +   L  
Sbjct: 86  LLID-------RIQYYSQHTEDILNLAKK-----------AEELTGYQITSQENIQNLLR 127

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
            G  +  R         LD+ + +  M   ++F +         L            K++
Sbjct: 128 QGGSYASRLLPSLAGGALDFIVILGLMFFTMYFMFVQQEGFQAGLQKYLP-FKKDTQKEL 186

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISF 262
              +   + +  +G  ++++ +G++ G+  W+ GVP  +  G +   MA IP  G P+ +
Sbjct: 187 GESLKNNVNANVIGQALVSLVQGVLTGATLWIFGVPDALFWGTVAFFMAFIPVLGTPLVW 246

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
               +  L +GN      + + G + +  +D  LR  L      +  L T  G+V GV  
Sbjct: 247 GPAGLIQLSQGNTSQGIGILVVGVVVIINIDNLLRIMLAKRMGDIHPLVTLAGIVLGVPI 306

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
            G+LGL +GP+L++   V+ +      K+ +++++
Sbjct: 307 FGILGLVVGPLLLSYFIVLMQVFERQNKQQEKEVA 341


>gi|115376481|ref|ZP_01463715.1| putative membrane protein [Stigmatella aurantiaca DW4/3-1]
 gi|115366484|gb|EAU65485.1| putative membrane protein [Stigmatella aurantiaca DW4/3-1]
          Length = 396

 Score =  131 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 63/332 (18%), Positives = 124/332 (37%), Gaps = 6/332 (1%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
             FF     A ++      + +    +        A +  V  +   + P+  L  + + 
Sbjct: 33  SPFFEAFFLAAVLAGAFQGMQTWLTRRLRGRRGLSAGLICVGFVFALLAPIAALTAFIVS 92

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMW--ASELWTKHLSHPQSLKILSETFLKTNG 145
           E+ + V  V    Q+   +   ++ +PG +      L  +  +    L    +  + + G
Sbjct: 93  EVIKGVQFVAGIIQNRG-LEGLMTYVPGRLQGPVGRLLDRFQAESAGLWQTLQEQVSSQG 151

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
                 F               + M+IA +F   +G  +   ++S+   L      ++  
Sbjct: 152 ATAAHTFGGLVAA-TGSLAFQAVMMLIAFYFLLVEGKQLVAWIESVSP-LRRGQTTELLT 209

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTA 264
               V RS        A  + L     +++ GVP  V    +T   A+IP  GA +   A
Sbjct: 210 EFRGVTRSVLSSTLATAGVQALAALVGFFITGVPVPVFFAAVTFFFALIPAIGAAVVCVA 269

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            ++ LL  G+   A  L LWG I + + D  ++P L    + +     FF L+GG+   G
Sbjct: 270 AAVLLLATGHPVAALVLALWGIIVVGLADNVVKPLLARRGMNMHGAIVFFALLGGLAVFG 329

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            +GL +GP+++A    + +           ++
Sbjct: 330 AIGLLLGPLIVAFFLSVVRIYQRDYGRTSARL 361


>gi|167626468|ref|YP_001676968.1| hypothetical protein Fphi_0251 [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596469|gb|ABZ86467.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 339

 Score =  131 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/326 (15%), Positives = 124/326 (38%), Gaps = 7/326 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  I  + ++ L  F   +L A ++     P+         +  +  + +  + ++   
Sbjct: 11  IICIIGALVMWVLYPFVYSILFAGLLAIILAPLQEYLEQHIGKHRS--SFLLVMGILLCV 68

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +P+L + YY + E+   +      +Q    +   +  IP   +   +  +H        
Sbjct: 69  FIPILIVLYYAISEIVSYLQHPETLSQTFATLGDSIGKIP---YIGSILQEHFDKLIKAI 125

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                 + +N    +P+     G   + +    +  ++ ++ F     ++ +    +   
Sbjct: 126 NDDSDTIISNLGQILPKV-RYVGSTSISFITDFLITLLLVYQFLVSSSTLEKFAKKVVLK 184

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F               R   L + + A   G V+   + L G+P+ + L    AI +MI
Sbjct: 185 DFDDS-DSFISTAIITTRRVSLAIFLTASLVGTVMAIVFLLTGMPTPILLAFTVAIASMI 243

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I +  +   + +      A  + + G       D  ++P ++   ++L F  +  
Sbjct: 244 PFMVGIVYILIGASVFVVYGATKAIIILVVGFALNIFTDNIMQPKIINKQVQLSFAASLI 303

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAV 340
           G++GG++  G +G+F+GPV+  +  V
Sbjct: 304 GILGGIQAFGFIGIFLGPVIFNVTFV 329


>gi|310819639|ref|YP_003951997.1| hypothetical protein STAUR_2366 [Stigmatella aurantiaca DW4/3-1]
 gi|309392711|gb|ADO70170.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 390

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/332 (18%), Positives = 124/332 (37%), Gaps = 6/332 (1%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
             FF     A ++      + +    +        A +  V  +   + P+  L  + + 
Sbjct: 27  SPFFEAFFLAAVLAGAFQGMQTWLTRRLRGRRGLSAGLICVGFVFALLAPIAALTAFIVS 86

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMW--ASELWTKHLSHPQSLKILSETFLKTNG 145
           E+ + V  V    Q+   +   ++ +PG +      L  +  +    L    +  + + G
Sbjct: 87  EVIKGVQFVAGIIQNRG-LEGLMTYVPGRLQGPVGRLLDRFQAESAGLWQTLQEQVSSQG 145

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
                 F               + M+IA +F   +G  +   ++S+   L      ++  
Sbjct: 146 ATAAHTFGGLVAA-TGSLAFQAVMMLIAFYFLLVEGKQLVAWIESVSP-LRRGQTTELLT 203

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTA 264
               V RS        A  + L     +++ GVP  V    +T   A+IP  GA +   A
Sbjct: 204 EFRGVTRSVLSSTLATAGVQALAALVGFFITGVPVPVFFAAVTFFFALIPAIGAAVVCVA 263

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            ++ LL  G+   A  L LWG I + + D  ++P L    + +     FF L+GG+   G
Sbjct: 264 AAVLLLATGHPVAALVLALWGIIVVGLADNVVKPLLARRGMNMHGAIVFFALLGGLAVFG 323

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            +GL +GP+++A    + +           ++
Sbjct: 324 AIGLLLGPLIVAFFLSVVRIYQRDYGRTSARL 355


>gi|296127433|ref|YP_003634685.1| hypothetical protein Bmur_2416 [Brachyspira murdochii DSM 12563]
 gi|296019249|gb|ADG72486.1| protein of unknown function UPF0118 [Brachyspira murdochii DSM
           12563]
          Length = 378

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 71/340 (20%), Positives = 142/340 (41%), Gaps = 12/340 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS--------TFLAVI 65
             I   I +    LK F   +  A++      P++   + K  +            LA++
Sbjct: 13  AFIFLSIFIMYKLLKPFGMIIFFAVVFYVVLNPLFIKAMGKSYKKKDKLSAIKKNTLALL 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            +++ + +F+VP   L Y  ++++ + +S + +     + V   L +     +   L   
Sbjct: 73  FSLTSLIIFLVPTSILAYTIIVQLID-ISNIGIKYFMNLDVNEVLRNSNINNFLKSLPID 131

Query: 126 HLSHPQSLKILSETFLK-TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                   +I   +    T    ++ +  +        +  S IFM+ +LFFF+ DG  +
Sbjct: 132 VSMETILKRIQDSSLSNLTFISSYLTQNVASLLKSTGGFVSSFIFMMFSLFFFFIDGEYL 191

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +Q+ +L   +   Y+ ++ + V + I+    G     + +G+     Y + GV +    
Sbjct: 192 MEQVRTLVP-IERKYFDRLIKQVSEGIKGIVFGNLFTGLFQGVCAFIVYSVFGVANSFTF 250

Query: 245 GVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
             +T I + +P  G  I +  + +  +I G +  A    +     + I D  +RP L+G 
Sbjct: 251 AFLTIIASFMPIIGTTIIWLPLGVLFIINGQLIKAIIFVICSWFFITIPDNFVRPLLLGN 310

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            I+L  L  FF ++GGV   GL G+ +GP+   L   I K
Sbjct: 311 RIELHPLFIFFAILGGVLFFGLSGIILGPLTFILFFEIMK 350


>gi|76801595|ref|YP_326603.1| permease [Natronomonas pharaonis DSM 2160]
 gi|76557460|emb|CAI49038.1| predicted transporter (predicted permease) [Natronomonas pharaonis
           DSM 2160]
          Length = 414

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/309 (21%), Positives = 128/309 (41%), Gaps = 16/309 (5%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
            +   VL   ++ +   P+     +         AV  +V+ +  F++PLL +    + E
Sbjct: 34  PYLEYVLLGAVLAYVLLPVQRRLEAHVG--RLVAAVSISVATVLAFLLPLLTVLAIALRE 91

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
              + + +             + D+PG     E  T       +L    E  +  + I  
Sbjct: 92  AVAVATALQRG----------VVDVPGIELWVEETTGFEVDLVNLYSTYEGQI-ASAIQS 140

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           I   A R         + +   +  LF   RD   +   L  +   +     +++ R + 
Sbjct: 141 IVTRAMRVVGGIPSLLIGLTVTVFVLFALLRDRGKLLAWLYRVLP-VDDGVQQELFRELD 199

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
           +++ ++ +G   +A  + ++LG A  L  VP  V L V T +++++P  GA   +  VS+
Sbjct: 200 RLMWASVVGNVAVAAIQAVLLGVALVLLDVPVVVFLTVTTFVLSLLPLVGAFGVWVPVSV 259

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           YL +      A  L ++G++ + + D   RP L+G    L       G+ GG+   G +G
Sbjct: 260 YLAVADRPTAAALLVVYGSL-VSLSDNYFRPALIGRSGALNPAIIVVGIFGGIVAFGAVG 318

Query: 328 LFIGPVLMA 336
           LFIGPV++ 
Sbjct: 319 LFIGPVVLG 327


>gi|32490775|ref|NP_871029.1| hypothetical protein WGLp026 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25165981|dbj|BAC24172.1| yb1688 [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 356

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/339 (19%), Positives = 139/339 (41%), Gaps = 7/339 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             I F++      L  F    + A II  ++WP++         S     ++  + ++C 
Sbjct: 18  IFIFFVLYGCFLILNPFIISFIWASIIVISTWPLFIRIKKFLYNSYFLSILLMEMLLICF 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQS 132
           FI P+  +         +++S ++  +Q+       +  IP  G          +     
Sbjct: 78  FIFPVFIVSTSFFKNFSKMISLIITFDQYIFSNLLLIKKIPIIGNKLFNTINILIYEKNL 137

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                     T+    I    +    +F +  L+++F I    F Y  G  I++ +    
Sbjct: 138 SLYEKLEPYITHITKIILSNLTLIWNLFFNCLLTVLFSI----FLYFKGNYINKFIKIFI 193

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            ++     K++  +  K IRS F+ + + +I + ++     +++ VP    L ++  I  
Sbjct: 194 YYIDDIKGKELVVLAEKSIRSVFVSVILASIIQTILSSIGLFISNVPFKSILIILIFIFC 253

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG-PIKLPFLP 311
           +   G    F  + ++   K N   +T LF+W  + +F +D  L+  L+    IKL  L 
Sbjct: 254 ITQLGIFPIFIPIILWFYYKENYIFSTILFVWSCL-VFALDNILKQILIKSIGIKLHNLL 312

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             FG++GG  + G++G+FIGP ++ +   + +      K
Sbjct: 313 IIFGILGGFLSFGMIGIFIGPTILTISWNLLRNLTFNYK 351


>gi|237803518|ref|ZP_04591103.1| lipoprotein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331025500|gb|EGI05556.1| lipoprotein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 211

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 7/198 (3%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             L+ +  F++ ++   ++ F SWP+        +   +  A++ ++  M L   PL++L
Sbjct: 19  ACLWVMAPFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAALVMSLCWMLLVAAPLVWL 78

Query: 82  FYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIP-GGMWASELWTKHLSHPQSLKILSET 139
            +     +++    +      G+P  P+WL+ IP  G     +WT       +     + 
Sbjct: 79  GFNLADHVRDATGLIKNIQVDGLPDPPQWLAGIPLVGERLVGIWTTIDQQGAAFMTTVKP 138

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
           +L   G   + R A + G   L+  LSIIF     FFFYRDG  ++  + SL E L    
Sbjct: 139 YLGEVGNWLLARSA-QIGGGILELTLSIIFA----FFFYRDGPRLAAFVLSLLERLIGDR 193

Query: 200 WKKISRIVPKVIRSTFLG 217
            +    +V   ++    G
Sbjct: 194 AQYYLDLVAGTVQRVVNG 211


>gi|134045617|ref|YP_001097103.1| hypothetical protein MmarC5_0574 [Methanococcus maripaludis C5]
 gi|132663242|gb|ABO34888.1| protein of unknown function UPF0118 [Methanococcus maripaludis C5]
          Length = 321

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 61/329 (18%), Positives = 125/329 (37%), Gaps = 21/329 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +F      Y L  F   +  A+ + + + P+Y     K   S         +  +   ++
Sbjct: 2   IFSFFALSYMLWPFIGIIALAVAVAYMTKPLYDVLKPKLGRSYGA------IFCLLGIVI 55

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
           P L L      ++   +  +   +   + V   LSD+            +L  P S    
Sbjct: 56  PSLLLVTLVAEDVITFLLSL-DIDSIMLQVTPILSDM-----------GYLGVPPSDVSQ 103

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
             + +       +   A++         + ++F+    F+F +DG  I            
Sbjct: 104 PVSDIWGVSKPLLNNLATQI-SAVPSLLMRLLFLSFMTFYFLKDGDKIKDSFLLYIPKEK 162

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
                     + K +++ F+G  + ++  G +    YWL G+P+ + LG ++ I+ ++P 
Sbjct: 163 KRNTLLFVNEIHKALKTLFIGNVVTSLIVGFISIIGYWLIGLPNPITLGALSGILNILPV 222

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIKLPFLPTFF 314
            G    +  +++Y L+ G       L  +G + L +  D  +RP ++     L       
Sbjct: 223 VGGWTIYVPLTVYYLLTGEFTKGILLGFFGIVFLSLAPDFAIRPRVISKDGDLHPALVLI 282

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             + G    G+ GL IGP+++AL+  I K
Sbjct: 283 AFLIGPLVFGIPGLAIGPIIVALVYAIHK 311


>gi|209809760|ref|YP_002265299.1| membrane protein [Aliivibrio salmonicida LFI1238]
 gi|208011323|emb|CAQ81774.1| membrane protein [Aliivibrio salmonicida LFI1238]
          Length = 355

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 60/340 (17%), Positives = 133/340 (39%), Gaps = 9/340 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           +  ++L     LK F   V+   II    +PI +    +   S + +++  T  ++ +  
Sbjct: 23  LSVLVLWCFSILKPFLLLVVWGGIIATALYPIVAFISKRTSVSESKVSIGLT--IIGVLF 80

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLK 134
           +PL+ +         EL       +         + + P  G  A     +  S+ +SL 
Sbjct: 81  IPLIAVSTGIYTSGSELFLGYQDGSIAIPKPNVAMQEWPLIGHKAYAFMLQASSNLESLL 140

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
               + +K          A   G  F+ + +S I   +    F  +     +    + + 
Sbjct: 141 FKYSSEIKVVAGK-AASLAGSLGFGFIQFIVSTIISGV----FMANAAKCERAFILVTDR 195

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L   + K ++ +    +RS   G+  +A+ + ++ G    L GVP+     ++  ++A+I
Sbjct: 196 LTGEHGKALTALSRTTVRSVVQGVIGVAVIQAIMAGLGMALVGVPALGLWVLLVLLVAII 255

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
                ++   V  Y+        A    +W  + +   D  L+P L+     +P +    
Sbjct: 256 QLPPILALLPVIFYVFSVDTTTTAVIFLIWC-LLIGSSDAILKPILLSRGSDIPMIVILL 314

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G +GG+   G++GLF+G V+++L   ++   +    +  +
Sbjct: 315 GALGGMAMSGIVGLFVGAVVLSLTYRLFMVWLENEDKENK 354


>gi|300934058|ref|ZP_07149314.1| hypothetical protein CresD4_08309 [Corynebacterium resistens DSM
           45100]
          Length = 566

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/300 (15%), Positives = 100/300 (33%), Gaps = 14/300 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             PVL +LI+    WP+    + K +  +     +  +    L       +    + + +
Sbjct: 169 ILPVLLSLIVCTVLWPV-VRTLRKFKIPNGIAVALTILGFFALIGGIFAAIAPSAVEQSR 227

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           +L ++          V +WL   P  +  S+         + L+  S           I 
Sbjct: 228 KLATQANDGIGE---VRQWLQGPPVNLQESQFEDAVNQATEWLQQKSGD---------IA 275

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
             A+      L   +++  M++  FFF +DG      L  +       +  ++       
Sbjct: 276 SQAAAGASATLSALVTLFIMLVLTFFFLKDGEKFLPMLRRVTGRRVGWHLTEVLTRCWNT 335

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           +        I++  +   +G    +  VP   AL ++T     IP        A+S+ + 
Sbjct: 336 LSGFIRTQAIVSFIDAFFIGLGLVILDVPLAGALAILTFFGGFIPMVGAFVAGALSVLIA 395

Query: 271 IKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           +   N+  A  +         +    L+P L    + +  +     +  G    G++G F
Sbjct: 396 LVAINVQTALIVLAIVVAVQQLEGNILQPLLQSRAMDIHPVIVLLSVTLGSTLFGIIGAF 455


>gi|225873136|ref|YP_002754595.1| hypothetical protein ACP_1510 [Acidobacterium capsulatum ATCC
           51196]
 gi|225791352|gb|ACO31442.1| putative membrane protein [Acidobacterium capsulatum ATCC 51196]
          Length = 353

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 68/326 (20%), Positives = 134/326 (41%), Gaps = 13/326 (3%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
           A ++ AL++   + P+      +        A    + ++ + I+    L    + +   
Sbjct: 34  AAIVGALVLAVATQPLLRWLRKRLAN--ATAAASIALFIVAIGIILPGALLARILGQYAV 91

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
            +   +        + + L+  P      +  ++ L+   + +             F+  
Sbjct: 92  AIGAALSNGAVEAAIRQALNHHPQLAALLQHGSRFLTWNNAAER---------AGTFLSA 142

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
            A       +     I+ M+  LFF YRD  +  + L S+   +       +   +   I
Sbjct: 143 HAINLLSNSIAALTQIVVMLFLLFFLYRDSRAAVRALYSVLP-MQQKEALMLVTSMEGTI 201

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLL 270
           R+TFLG   +A  +G+V G  + +  V     LG++TA+ AM+P  GA + +  V++YL 
Sbjct: 202 RATFLGHLAVAAIQGIVAGIVFAILRVTGAAPLGMLTAVAAMVPSFGAYVVWLPVAVYLG 261

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           + G +  A  L + GA+ +  +D  L P LVG  ++         L+GG+   G+ GL +
Sbjct: 262 LAGRLIPAILLIVIGALIISTLDNLLYPLLVGAQLRQHPAIILLALLGGIWMFGIAGLVL 321

Query: 331 GPVLMALIAVIWKESIMAIKENKEKI 356
           GPVL ++   + +      +   E I
Sbjct: 322 GPVLFSVAMALLRIWHERSQAGVEAI 347


>gi|51244045|ref|YP_063929.1| hypothetical protein DP0193 [Desulfotalea psychrophila LSv54]
 gi|50875082|emb|CAG34922.1| hypothetical membrane protein [Desulfotalea psychrophila LSv54]
          Length = 365

 Score =  129 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 135/352 (38%), Gaps = 6/352 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLY--FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           + +  P  I  ++++F I        L  F++ ++ + ++     P+Y     +     +
Sbjct: 12  KPLPGPMRIKYFLLVFAIAFFFLGRILWPFWSILVLSFLLVNIFQPVYLFLSKQLP--RS 69

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             + +  + ++ L   PLLF       E     + V  +                    +
Sbjct: 70  VASGLTCLMIIALVFFPLLFFTGALTGEALSFYNWVRDSQVWMRFQDFIQQSQFITRMQA 129

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L    +    +    S  +    G  F+   AS +    L        MI+ +FF + D
Sbjct: 130 PLKDFGIDFQPAQITASLAYFAKAGGLFLYDQASSWAANILQSVALFFIMILVIFFLFMD 189

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              + + L  L   L     + + +   ++  +   G  I  I +G++ G  + +  +PS
Sbjct: 190 LLRLKEFLFKLSP-LPEDENRLLVKKFEEIANAILKGSGICGIIQGIIGGVLFSIMHLPS 248

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  G I +++A +P  G  +     ++ L I G    A+ L +   +    ++  ++P 
Sbjct: 249 PILWGCIMSVLAFLPIFGIGLVMLPAALALAIDGQTATASSLVISYLVLSLGMEYLIKPK 308

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           LVG  +++  L  F  ++GG+   G+LG+  GP+++     +    +    +
Sbjct: 309 LVGSQVEMHTLLVFLSIIGGISVYGILGIIYGPLIITAFLTLSNIYLRRYDQ 360


>gi|212702630|ref|ZP_03310758.1| hypothetical protein DESPIG_00658 [Desulfovibrio piger ATCC 29098]
 gi|212673902|gb|EEB34385.1| hypothetical protein DESPIG_00658 [Desulfovibrio piger ATCC 29098]
          Length = 367

 Score =  129 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 56/288 (19%), Positives = 122/288 (42%), Gaps = 18/288 (6%)

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP-RWL-------SDIPGGMW 118
            V +    ++P+  L      ++   ++++     +   +P  W+         +     
Sbjct: 81  IVMIFSAVVIPISTLVLLVSPQVAGGLARLRELQANNFQLPPEWVMRFQELRHSLADYPK 140

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             ++ ++ LS+  ++   +   L    +D +    +    +FL   L++IF   A     
Sbjct: 141 VDKMISEFLSNLDAMLADTMGLLINRSVDVLGGTMTVLWTLFLFVTLTVIFAAYA----- 195

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
               S    + +   H+     ++    + + ++   LG+ ++AI +G++ G  + +AG+
Sbjct: 196 ----SRINLITARIFHIPATMLRRFVLAIRRALQGVMLGIVLVAIAQGVLCGIGFAVAGI 251

Query: 239 PSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
                 G++  ++A IP  G  + +  + + L   G    A  L LWG + +  VD  LR
Sbjct: 252 KQPAFWGLLATVVAPIPFVGTALVWGPLCLSLWFSGATMPAVGLALWGTLAVTSVDNILR 311

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           P  +   I  PF      ++ G+ + G +GL IGPVL+A+     +E+
Sbjct: 312 PLFLQQGINAPFFVLIIAILCGLGSFGPMGLIIGPVLLAIAMQAVEEA 359


>gi|260204344|ref|ZP_05771835.1| hypothetical protein MtubK8_08558 [Mycobacterium tuberculosis K85]
          Length = 342

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 54/311 (17%), Positives = 109/311 (35%), Gaps = 7/311 (2%)

Query: 43  TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA--N 100
              P++  F  +   ++   A    +S +   +VP+  L    ++++  +V  V      
Sbjct: 1   MFTPLFKWFTKRF--NTGLSAACTLLSALAAVVVPVGALVGLAIVQIARMVDSVADWVRT 58

Query: 101 QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIF 160
                +   +     G++    +        +L+    +  +  G   +  F        
Sbjct: 59  TDLSTLGDKILQFVNGLFDRVPFLHITVTADALRKAMISVAQNVGEWLLH-FLRDAAGSL 117

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
                S I  +        +   +   +  L   L         + +  ++R T  G  +
Sbjct: 118 AGVITSAIIFVYVFVALLVNREKLRTLIGQLNP-LGEDVTDLYLQKMGSMVRGTVNGQFV 176

Query: 221 IAIGEGLVLGSAYWLAGVPSHVA-LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNAT 279
           IA  +G+   ++ ++AG         ++   +++IP G  I      I ++  GNI    
Sbjct: 177 IAACQGVAGAASIYIAGFHHGFFIFAIVLTALSIIPLGGGIVTIPFGIGMIFYGNIAWGI 236

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
            + LW  + +  +D  LRP LV    +L        +  G+   G  G+ IGPVLM LI 
Sbjct: 237 FVLLWHLLVVTNIDNVLRPILVPRDARLNSALMLLSVFAGITMFGPWGIIIGPVLMILIV 296

Query: 340 VIWKESIMAIK 350
                 +   K
Sbjct: 297 TTIDVYLAVYK 307


>gi|295135659|ref|YP_003586335.1| hypothetical protein ZPR_3833 [Zunongwangia profunda SM-A87]
 gi|294983674|gb|ADF54139.1| membrane protein, UPF0118 [Zunongwangia profunda SM-A87]
          Length = 339

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 59/330 (17%), Positives = 125/330 (37%), Gaps = 23/330 (6%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKK---EESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
             P L+ ++   T + + +S++ K        +  A +         ++P+  +      
Sbjct: 29  LVPYLTGILGAITLYVLMASWMEKLLKKGWKPSVAAGVLMFGSFIGILIPVSGIIIMLTS 88

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           ++ + V+   +           +S I   +   E +  +                +    
Sbjct: 89  KIGKAVNNSEMV----------VSAIKKQLQHLEEYVGYDITGA--------IDTSAISG 130

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
           ++            +  +++  M   L+F   +   +   L      L  A    I++  
Sbjct: 131 WVSEKLQNLAGGTFNVFVAVGLMYFMLYFMLINREKMKTALIDYIP-LGKANLSTIAKES 189

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVS 266
             +++S  LG+ ++A  +GL+    Y + GVP       ITAI +MIP  G  I     +
Sbjct: 190 NLLVKSNALGIPLVAFVQGLIALIGYLVLGVPDPFFWFGITAIGSMIPFIGTAIGIAPTT 249

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           I L   G  +    L ++G + +   D  +R  ++    K+  L T  G++ GV+  G +
Sbjct: 250 ILLFADGQNWQGVALLIYGIVVVGSTDNLIRIMVLDRLAKVHTLITLVGVIVGVQIFGFI 309

Query: 327 GLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           GL  GP+L++L  +I K          +++
Sbjct: 310 GLIFGPLLVSLFLLILKIYKKEYGNENDRL 339


>gi|87312173|ref|ZP_01094276.1| probable permease [Blastopirellula marina DSM 3645]
 gi|87285098|gb|EAQ77029.1| probable permease [Blastopirellula marina DSM 3645]
          Length = 523

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 47/191 (24%), Positives = 98/191 (51%), Gaps = 6/191 (3%)

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           ++F+ DG ++      L   L   Y +++     +V R+  L   + A+ +GL+ G  +W
Sbjct: 330 YYFFFDGPALISAAMRLSP-LDDEYERQLIEEFSQVSRAVVLATLLSALAQGLLAGIGFW 388

Query: 235 LAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGN-IFNATCLFLWGAIELFIV 292
             G+ S   L  +T  +AM+P  GA   +  VS++L++    +     L ++G   + +V
Sbjct: 389 FCGLESVFLLMFLTMTLAMVPFLGAASVWVPVSVWLIVAEERLAAGVGLAIYGVAVISLV 448

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA---LIAVIWKESIMAI 349
           D  ++PF++ G  KL  L     ++GGV  +G +G+ +GP+L+A   ++  + +  ++ +
Sbjct: 449 DNIIKPFVLHGQSKLHPLLALLSVLGGVSALGPIGILVGPMLVAFMQVLLNMLRGELVKM 508

Query: 350 KENKEKISSNF 360
            E ++   +N 
Sbjct: 509 GEAEDAKDANL 519



 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 4/93 (4%)

Query: 5  MLNPQGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
          M  P+    W ++ I+ V+ +F    +  F  P+  A I+     P++   + K +  + 
Sbjct: 1  MSLPKMFSFWALLAIVGVAAFFTYQVMSIFLVPMFLAAILVVIFRPLHDWIVEKFKGRNA 60

Query: 61 FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
            A   T+ ++ + + PL+ +F   + E  +LV
Sbjct: 61 LAAGATTLIILLIVLAPLIGIFSMAIKETIDLV 93


>gi|225621492|ref|YP_002722751.1| hypothetical protein BHWA1_02594 [Brachyspira hyodysenteriae WA1]
 gi|225216313|gb|ACN85047.1| predicted transmembrane protein of unknown function [Brachyspira
           hyodysenteriae WA1]
          Length = 372

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 73/342 (21%), Positives = 139/342 (40%), Gaps = 12/342 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES--------STFLAVI 65
             I   I +    L+ F   +  A++      P++   + K  +            LA++
Sbjct: 13  AFIFLSIFIMYKLLRPFGMIIFFAVVFYVILNPLFIKAMGKSYKKTDKLSIIKKNTLALL 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            ++  + +F+VP   L Y  ++++ + +S + +     + V   +++     +   L   
Sbjct: 73  FSLISLIIFLVPTSILAYTIIVQLID-ISNIGIKYFMNLDVNEVINNSNINNFLKSLPID 131

Query: 126 HLSHPQSLKILSETFLK-TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                   +I   +    T    ++ +  +        +  S IFM+ +LFFF+ DG  +
Sbjct: 132 VSMETILKRIQDSSLSNLTFISSYLTQNVAGLLKSTGRFVSSFIFMMFSLFFFFVDGEYL 191

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             Q+ +L   +   Y  ++ + V + I+    G     I +G      Y + GV +    
Sbjct: 192 IGQVRTLVP-IDEKYLDRLIKQVSEGIKGIVFGNLFTGIFQGFCAFIVYTVFGVTNSFTF 250

Query: 245 GVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
             +T I + +P  G  I +  + I  LI G I  A    +     + I D  +RP L+G 
Sbjct: 251 AFLTIIASFMPIIGTTIIWIPLGILFLINGEIIRAIIFIVCSWFFITIPDNFVRPLLLGN 310

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            I+L  L  FF ++GGV   GL G+ +GP+   L   I K  
Sbjct: 311 RIELHPLFIFFAILGGVLFFGLSGIILGPLSFILFFEIMKIY 352


>gi|320535789|ref|ZP_08035870.1| hypothetical protein HMPREF9554_00591 [Treponema phagedenis F0421]
 gi|320147337|gb|EFW38872.1| hypothetical protein HMPREF9554_00591 [Treponema phagedenis F0421]
          Length = 365

 Score =  129 bits (324), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 58/334 (17%), Positives = 121/334 (36%), Gaps = 9/334 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEE-------SSTFLAVIATVSVMCLFIVPL 78
               +   +  + I+     P+Y+  I+K          +  FLA    V  + +    L
Sbjct: 26  LFLPYATVLFWSAILYILISPLYNKIIAKMNPEKKWFNLTRRFLAGTFAVGTVVIVAAVL 85

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           LF+    + + K L  ++ L       +              +L    L           
Sbjct: 86  LFIVIKLVGQGKALFQRISLFLIDHNELFFNFDKEALNELVIKLSMGTLDISAIDIKKEV 145

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
               +     +  +          + +S++F    L+FFY DG  +     S+   +   
Sbjct: 146 MNFLSQYSSNLLGYTRTLFANMGLFAVSLVFTCFTLYFFYIDGHYLLNLFISIMP-IKAD 204

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GG 257
              K+     +V  +   G+ +++  + ++    Y +  V   + L ++T   + +P  G
Sbjct: 205 ASTKLLNKFNEVTTNLLKGLFLVSFYQCIISLIIYLIFKVEGALLLAILTFFSSFLPLVG 264

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
               +  + I + +           L     +  +D  LRPF +   IK+  L  FF ++
Sbjct: 265 CAFVWFPIGIGICLLEGWLKGIIFLLVAGTLISFMDNFLRPFFLKDRIKIHPLLIFFSML 324

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           GGV+ +G  G+ +GP+++ L   I   +  + KE
Sbjct: 325 GGVQMLGFNGIILGPMIVILFFTIIDIAHDSEKE 358


>gi|300711171|ref|YP_003736985.1| hypothetical protein HacjB3_09050 [Halalkalicoccus jeotgali B3]
 gi|299124854|gb|ADJ15193.1| hypothetical protein HacjB3_09050 [Halalkalicoccus jeotgali B3]
          Length = 326

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 61/337 (18%), Positives = 132/337 (39%), Gaps = 24/337 (7%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +G +   +    L+ LY L  F   VL+A+++ +   P++     +         V
Sbjct: 1   MNKQRGFLLLAVCLSFLLGLYVLLPFLEYVLAAILLAYVLHPLHVRLAPRIGPR--LSPV 58

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +     +   + P  ++F   + +++      + A + G+ V      I           
Sbjct: 59  VLIGFSLVAVVAPFAYVFAALVRDLR-----AIAAGESGLRVAEVEGTI----------A 103

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
            +      L+       +T         A  FG   L     +  ++  L++  +DG   
Sbjct: 104 TYTGRSVDLERWIRVGAETIFEVSFSGLAELFGA-ALKASFGLALVLFLLYYLLKDGACF 162

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              L      L P    ++   +     +  +G   +A  +G+  G    LAGVP  V  
Sbjct: 163 VAWLKETTP-LPPDVTDRLYCRIDATTWAVIVGHVFVAFVQGMAGGIGLLLAGVPDPVFW 221

Query: 245 GVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
             +  ++A++P  GA + +    +YLL+ G+ +    L ++G + + ++D  +RP ++  
Sbjct: 222 TAVMILLALLPLIGAFLVWAPAGVYLLLIGHPYAGLFLLVYGIVVVSMIDNYVRPIIIDA 281

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
             +L       G+ GG+ ++G    F+GP+ + ++  
Sbjct: 282 RARLNPGVILVGVFGGIYSLG----FVGPIALGVLGA 314


>gi|289582606|ref|YP_003481072.1| hypothetical protein Nmag_2958 [Natrialba magadii ATCC 43099]
 gi|289532159|gb|ADD06510.1| protein of unknown function UPF0118 [Natrialba magadii ATCC 43099]
          Length = 339

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 147/357 (41%), Gaps = 22/357 (6%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +G +  +++    +S   +  F   VL A+++ F  +P+     S    S    A+
Sbjct: 1   MNISKGYLLTLVLIFAYLSWQLVVPFLQYVLLAVLLAFLLFPLQQRLESYV--SPMLAAL 58

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
              +  +  FI+P L +      +   L+  +         +   + D            
Sbjct: 59  SLVLLAIIGFIIPFLLIVAVVADDAANLLESLDAETLQVSELESTIED------------ 106

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
              +  +   I +          F+   A+ +        +     +  L++  ++G ++
Sbjct: 107 --QTGMEVDLIETAADSAQEVGTFVLEQATAWFSALTHALIGFGLALFLLYYLLKNGDNL 164

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + +  +   L       +   +  V+ +  +G  +IAI EG++ G A +  G+P+    
Sbjct: 165 LEWIREVTP-LPMDVQDDLYGELSDVMWAVLVGHVLIAIIEGVIAGLALFAVGIPNAAFW 223

Query: 245 GVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
             I  I++++P  GAP+ +   SIYL++ G    A  L ++ AI + + D  LRP +V  
Sbjct: 224 TFIMVILSLVPLIGAPLVWIPASIYLVVIGEPLLAAGLAVYSAIVVGVSDDYLRPVVVDR 283

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
             ++       G++GG+   G++GLF GPV++  +  +    I  + E  ++++  +
Sbjct: 284 YAEISPAVIILGVLGGIYAFGIMGLFFGPVVVGALITV----IEVLDEEYDRLAEEY 336


>gi|15679222|ref|NP_276339.1| hypothetical protein MTH1211 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|8928484|sp|O27279|Y1211_METTH RecName: Full=UPF0118 membrane protein MTH_1211
 gi|2622321|gb|AAB85700.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 334

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 64/354 (18%), Positives = 137/354 (38%), Gaps = 23/354 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M E +        + +M ++L+S   +   +  +    +  +   P+      +    S 
Sbjct: 1   MIERLRGALASASFPVMALLLLSAIVVYPLWTMLFLGAVFAYIVRPVALRINRRIPYLS- 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               ++ +  M + I+PL+ +  + +  +            +  P    L+       A 
Sbjct: 60  ----VSIILAMIVVIMPLVGILVFTVDSII-----------NSAPSLLSLAGSIHVPGAG 104

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L     +   +L+ +    L  +    +               L +   + + F+F RD
Sbjct: 105 NLQPSAENTLANLRTVLRDILSGSLNYVVA-----ILQSVPMISLQLFVFLSSTFYFARD 159

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +   + +L       + ++++    +V+ S F G  + A+  GL+    + L G P 
Sbjct: 160 GKRLVGYIRTLIPEETRPFMERMASETERVLLSIFYGHFLTALAIGLMAAVGFHLLGYPY 219

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            + LG++T +  +IP  G   ++T +SIY  + GNI     + ++G + L  +D  LRP 
Sbjct: 220 AILLGIMTGLFQLIPVIGPWAAYTPLSIYDFVTGNILRGVLVLIFG-LFLSTIDIYLRPK 278

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L G    +  +    G +GG    G+ G  +GP+++ L     +   M     +
Sbjct: 279 LSGKYADIHPMIFLVGFLGGPVVWGVAGFIVGPLVLGLAYAALEAYRMESGGEE 332


>gi|31792294|ref|NP_854787.1| hypothetical protein Mb1131c [Mycobacterium bovis AF2122/97]
 gi|31617882|emb|CAD93992.1| CONSERVED MEMBRANE PROTEIN [Mycobacterium bovis AF2122/97]
          Length = 342

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 54/311 (17%), Positives = 109/311 (35%), Gaps = 7/311 (2%)

Query: 43  TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA--N 100
              P++  F  +   ++   A    +S +   +VP+  L    ++++  +V  V      
Sbjct: 1   MFTPLFKWFTKRF--NTGLSAACTLLSALAAVVVPVGALVGLAIVQIARMVDSVADWVRT 58

Query: 101 QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIF 160
                +   +     G++    +        +L+    +  +  G   +  F        
Sbjct: 59  TDLSTLGDKILQFVNGLFDRVPFLHITVTADALRKAMISVAQNVGEWLLH-FLRDAAGSL 117

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
                S I  +        +   +   +  L   L         + +  ++R T  G  +
Sbjct: 118 AGVITSAIIFVYVFVALLVNREKLRTLIGQLNP-LGEDVTDLYLQKMGSMVRGTVNGQFV 176

Query: 221 IAIGEGLVLGSAYWLAGVPSHVA-LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNAT 279
           IA  +G+   ++ ++AG         ++   +++IP G  I      I ++  GNI    
Sbjct: 177 IAACQGVAGAASIYIAGFHHGFFIFAIVLTALSIIPLGGGIVTIPFGIGMIFYGNIAGGI 236

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
            + LW  + +  +D  LRP LV    +L        +  G+   G  G+ IGPVLM LI 
Sbjct: 237 FVLLWHLLVVTNIDNVLRPILVPRDARLNSALMLLSVFAGITMFGPWGIIIGPVLMILIV 296

Query: 340 VIWKESIMAIK 350
                 +   K
Sbjct: 297 TTIDVYLAVYK 307


>gi|121637032|ref|YP_977255.1| hypothetical protein BCG_1161c [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224989505|ref|YP_002644192.1| hypothetical protein JTY_1134 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|260186029|ref|ZP_05763503.1| hypothetical protein MtubCP_08383 [Mycobacterium tuberculosis
           CPHL_A]
 gi|121492679|emb|CAL71148.1| Conserved membrane protein [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224772618|dbj|BAH25424.1| hypothetical protein JTY_1134 [Mycobacterium bovis BCG str. Tokyo
           172]
          Length = 342

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 54/311 (17%), Positives = 109/311 (35%), Gaps = 7/311 (2%)

Query: 43  TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA--N 100
              P++  F  +   ++   A    +S +   +VP+  L    ++++  +V  V      
Sbjct: 1   MFTPLFKWFTKRF--NTGLSAACTLLSALAAVVVPVGALVGLAIVQIARMVDSVADWVRT 58

Query: 101 QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIF 160
                +   +     G++    +        +L+    +  +  G   +  F        
Sbjct: 59  TDLSTLGDKILQFVNGLFDRVPFLHITVTADALRKAMISVAQNVGEWLLH-FLRDAAGSL 117

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
                S I  +        +   +   +  L   L         + +  ++R T  G  +
Sbjct: 118 AGVITSAIIFVYVFVALLVNREKLRTLIGQLNP-LGEDVTDLYLQKMGSMVRGTVNGQFV 176

Query: 221 IAIGEGLVLGSAYWLAGVPSHVA-LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNAT 279
           IA  +G+   ++ ++AG         ++   +++IP G  I      I ++  GNI    
Sbjct: 177 IAACQGVAGAASIYIAGFHHGFFIFAIVLTALSIIPLGGGIVTIPFGIGMIFYGNIAGGI 236

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
            + LW  + +  +D  LRP LV    +L        +  G+   G  G+ IGPVLM LI 
Sbjct: 237 FVLLWHLLVVTNIDNVLRPILVPRDARLNSALMLLSVFAGITMFGPWGIIIGPVLMILIV 296

Query: 340 VIWKESIMAIK 350
                 +   K
Sbjct: 297 TTIDVYLAVYK 307


>gi|289573754|ref|ZP_06453981.1| LOW QUALITY PROTEIN: conserved membrane protein [Mycobacterium
           tuberculosis K85]
 gi|289538185|gb|EFD42763.1| LOW QUALITY PROTEIN: conserved membrane protein [Mycobacterium
           tuberculosis K85]
          Length = 355

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 54/312 (17%), Positives = 109/312 (34%), Gaps = 7/312 (2%)

Query: 42  FTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA-- 99
               P++  F  +   ++   A    +S +   +VP+  L    ++++  +V  V     
Sbjct: 13  LLFTPLFKWFTKRF--NTGLSAACTLLSALAAVVVPVGALVGLAIVQIARMVDSVADWVR 70

Query: 100 NQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI 159
                 +   +     G++    +        +L+    +  +  G   +  F       
Sbjct: 71  TTDLSTLGDKILQFVNGLFDRVPFLHITVTADALRKAMISVAQNVGEWLLH-FLRDAAGS 129

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
                 S I  +        +   +   +  L   L         + +  ++R T  G  
Sbjct: 130 LAGVITSAIIFVYVFVALLVNREKLRTLIGQLNP-LGEDVTDLYLQKMGSMVRGTVNGQF 188

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVA-LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA 278
           +IA  +G+   ++ ++AG         ++   +++IP G  I      I ++  GNI   
Sbjct: 189 VIAACQGVAGAASIYIAGFHHGFFIFAIVLTALSIIPLGGGIVTIPFGIGMIFYGNIAWG 248

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             + LW  + +  +D  LRP LV    +L        +  G+   G  G+ IGPVLM LI
Sbjct: 249 IFVLLWHLLVVTNIDNVLRPILVPRDARLNSALMLLSVFAGITMFGPWGIIIGPVLMILI 308

Query: 339 AVIWKESIMAIK 350
                  +   K
Sbjct: 309 VTTIDVYLAVYK 320


>gi|118602640|ref|YP_903855.1| hypothetical protein Rmag_0639 [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567579|gb|ABL02384.1| protein of unknown function UPF0118 [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 360

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 76/357 (21%), Positives = 153/357 (42%), Gaps = 24/357 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G M  ++   I   ++    F + +  +L+I  T++  Y    ++   SS   A++ T+ 
Sbjct: 12  GFMLSLLFLAIGGLIWLFTPFISALFLSLMIAITTFSKYEQLQNRF--SSNNSALLTTLL 69

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVL---ANQHGIPVPRWLSDIPGGMWASELWTKH 126
           V  + I+PL ++     LE+  L+  +      ++    + + ++ +P   +     +  
Sbjct: 70  VTIVLILPLGYILLISTLEISTLIQTINHDLNFDKITQILNQTVTKLPLSDFIKNTLSST 129

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           L++           L     DF          +   + L +I +I  L++FY DG  I  
Sbjct: 130 LNNNL-------EALFIGVKDFSIVILKSIVSLSSHFILFLIIVIFTLYYFYIDGKKIVT 182

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           ++ SL   L       +      +  +    + +IA+ +G++      + G+P  +  G+
Sbjct: 183 RIKSLSP-LEAHLNNILLNQFKNLSITLVGSVFLIALLQGMIFSITIIIIGLP-ALYFGI 240

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLVGGP 304
             A+ + IP  G  I +  +S+YL  +G I +A  + L GA+ + FIVD   RP ++   
Sbjct: 241 AMAMASFIPLLGGLIIWLPLSLYLYAQGQITDALIVALSGAVVIGFIVDNLARPSIIKFL 300

Query: 305 IKL--------PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            K           L T    + G+   G+LGLFIGP++ A+   I+    +   +++
Sbjct: 301 SKKSNGTNTLDHTLITVLSTLSGIIQFGILGLFIGPIIAAMAISIFDIYSIRYNKDR 357


>gi|256810121|ref|YP_003127490.1| protein of unknown function UPF0118 [Methanocaldococcus fervens
           AG86]
 gi|256793321|gb|ACV23990.1| protein of unknown function UPF0118 [Methanocaldococcus fervens
           AG86]
          Length = 333

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/332 (17%), Positives = 140/332 (42%), Gaps = 20/332 (6%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           + +I+ +++V LY +  F   +  +    + + P+Y  F  K   S    A +A    + 
Sbjct: 11  KGVIIGLLIVLLYIIWPFIDVLAYSCAFAYMALPLYKLFRKKF--SRAVSAGLA----LS 64

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           ++++P++ +  Y +  + + +      + +   +  ++S +        L+T  + +   
Sbjct: 65  IYVIPIMVITIYALFAVIDFI-----FSFNINVIEEYISGV------FNLYTSSIFNGFV 113

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
            +     ++      FI + + +         + +I +I   F+F ++G      + S  
Sbjct: 114 NEQTLTKYIDEFVKYFINQLSGKIFD-TGYLIIKVIMVIFITFYFLKEGDKAENVIISFT 172

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            + +    K     +    ++ F+    ++I   ++    Y + GVP      V+T I A
Sbjct: 173 PNEYKEKMKIYLEYLHDSYKNLFISCVSLSIIITILSYIGYLIVGVPYAELFAVVTGIFA 232

Query: 253 MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIKLPFL 310
           ++P  G  + +  ++IY  I  +   A  LF++G + L I  D  +RP+LV   + +  +
Sbjct: 233 LLPILGGWMVYIPIAIYYFITHDYTKAIFLFIYGELMLSIAPDFVIRPYLVKKEVDIHPV 292

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                 +    ++GL G  IGP+++  +   +
Sbjct: 293 LVIVAFLMAPLSLGLSGFAIGPLVVGALNAFY 324


>gi|15669367|ref|NP_248172.1| hypothetical protein MJ_1177 [Methanocaldococcus jannaschii DSM
           2661]
 gi|8928508|sp|Q58578|Y1177_METJA RecName: Full=UPF0118 membrane protein MJ1177
 gi|1591804|gb|AAB99180.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 334

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/336 (17%), Positives = 148/336 (44%), Gaps = 19/336 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + + + +I+ ++++ LY +  F   +  +    + + P+Y+    K   + T  A +A  
Sbjct: 7   KYVRKGVIVGLLIMLLYIIWPFIDVLAYSCAFAYMALPVYNILRKKF--NKTISAGLA-- 62

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + ++I+P++ +  Y +L   E++      + +   +  ++++I   ++ S +  + ++
Sbjct: 63  --ISIYILPIMTITIYALLTFMEII-----LSFNTKSIEPYINEI-LSIYNSFMLERIIN 114

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           + Q +    + F+K     F  +             + +I ++   F+F RDG      +
Sbjct: 115 NEQIIAKYIDEFIKYLVSQFSGKII-----DVGYLIVKVIMVLFLTFYFLRDGDKAKNLI 169

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S     +    +     +    ++ F+    ++I   ++    Y + GVP      +IT
Sbjct: 170 ISFVPDEYKEKMRIYLSYLHDSYKNLFISCVSLSIIITILSYIGYLILGVPYAELFAIIT 229

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIK 306
            I A++P  G  + + +++IY  +  +   A  +F++G + L I  D  +RP+LV   + 
Sbjct: 230 GIFALLPILGGWMVYISIAIYFFLIHDYTKAVFMFIYGELFLSIAPDFVIRPYLVKKEVD 289

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +  +      +    ++GL G  IGP+++  +   +
Sbjct: 290 IHPVLVVIAFLMAPLSLGLSGFAIGPLVVGALNAFY 325


>gi|254517038|ref|ZP_05129096.1| transporter, PerM family [gamma proteobacterium NOR5-3]
 gi|219674543|gb|EED30911.1| transporter, PerM family [gamma proteobacterium NOR5-3]
          Length = 377

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 60/337 (17%), Positives = 126/337 (37%), Gaps = 8/337 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I+ +++        F   +L  +I+  + +P++ S   +   S    A +  V  + L 
Sbjct: 25  LIVAVVIACERIFAPFLPIMLWGVILAVSLYPLFLSLCRRTRLSPGSNAALIVVLGILLL 84

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
            VP + L       + +++     +          + D P  G      W+   +     
Sbjct: 85  GVPTVMLGSSFATHIFDVIGNFDASTYTVRAPNDAVKDWPIVGERVFAAWSSAYTDLPGF 144

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
               +  L           AS  G +   +   II  ++  +     G S +  +  +  
Sbjct: 145 IESLQPQLGNFSKSAAKAAASTAGTLLFFFGALIIAGVMMAY-----GESGTAAVGRIFA 199

Query: 194 HLFPAYWKKISRIVPK-VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            +           +    +RS   G+  +A  + L+ G  + LAG P+   L ++T IM 
Sbjct: 200 RMVGGQKGPALHTITTLTVRSVATGVVGVAFIQALLFGVGFMLAGTPAAGLLALVTLIMG 259

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFL-WGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++   A +    V  Y+   G+      + L    I     D  L+P L+G  + +P   
Sbjct: 260 IVQLPALLVSLPVIAYVWGMGDGGTVVNVALTIYFIIAGFSDNVLKPMLLGRGVSVPMPV 319

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
              G +GG+   G++GLF+G V++++   ++   +  
Sbjct: 320 VLLGALGGMMGAGIVGLFVGAVILSVGYELFMGWVDE 356


>gi|73670231|ref|YP_306246.1| hypothetical protein Mbar_A2764 [Methanosarcina barkeri str.
           Fusaro]
 gi|72397393|gb|AAZ71666.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 346

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 61/345 (17%), Positives = 135/345 (39%), Gaps = 8/345 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +   +I  + ++  Y    +   +  ALI+     P+Y   I + +    F A++  +  
Sbjct: 9   LALLIIAVLTVLITYATLPYLNYIFGALILFIIFRPLYHFLIRRLKIRKQFAALLIIIIS 68

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + +VPL FL    + E+++L+               +L+D      +       ++  
Sbjct: 69  IFVVLVPLYFLLNTIIDEIEQLLVNQASILASIEAGGHFLTD------SLLRLNIPINIF 122

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           Q+        L +  +++   F            + ++ M   L++ + +  S   +  S
Sbjct: 123 QAKIEEKAMELASQAVNYTSLFIVESIQNLSHQSIGLLIMYFLLYYLFTEEDSDFMRQVS 182

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +           +     K++R+T +    +A+ +G +L   + +  +      G I AI
Sbjct: 183 VAVPFNEENTATLLDEFRKIVRTTLIASGAVALVQGGILTIVFVIFNIQGAFLWGFIAAI 242

Query: 251 MAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++ +P  GAP  +   +I    + +        L   I + ++D  LRP +     ++  
Sbjct: 243 LSFLPVVGAPFIWVPATIVQFFQKDYTA-AIAILAAGIFISVIDNFLRPIIQKRVGEIHP 301

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             +  G+V GV   GLLG+ IGP+L++   +  +         KE
Sbjct: 302 FLSLLGVVIGVSLFGLLGIVIGPLLLSYFVLTVQMFSREYLSGKE 346


>gi|78486220|ref|YP_392145.1| hypothetical protein Tcr_1881 [Thiomicrospira crunogena XCL-2]
 gi|78364506|gb|ABB42471.1| Conserved hypothetical protein with DUF20 [Thiomicrospira crunogena
           XCL-2]
          Length = 367

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 78/370 (21%), Positives = 146/370 (39%), Gaps = 19/370 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           MR      +G +  +++  ++  L+    F   +L A+I+   ++ +Y   + K ++S  
Sbjct: 1   MRSNAPYEEGFLIILLLTAVVGLLWLFSPFLEALLFAMILATATYSLYLKVLPKVKQSPN 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           + + + +V V    I P+ +L     L++  +VS+           P  LS +   +   
Sbjct: 61  YASAVMSVFVFVTVIAPVTYLLLEVGLQVGHIVSQAEQWLSQQT--PESLSQLNQNLVEV 118

Query: 121 ELWTKHLS-HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
             + +            +   L T   D I             +   I   + ALFFFYR
Sbjct: 119 IPFPESTQMELIRQVKDNSDKLITFAQDTIMFLVKGIFGNTTSFITFIFLAVFALFFFYR 178

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  IS  L  L   L   Y   I      +     L +  +A+ +G V     W  G+P
Sbjct: 179 DGHRISHHLKILSP-LENYYDTMIMTRFSNLSTILLLSVLGVALMQGAVFAIVAWFLGMP 237

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLR 297
             + +G+  AI + IP  GA + +   ++ ++ +G+   A  +  +GA+   F +D  +R
Sbjct: 238 G-LFIGMAIAITSFIPIVGAALIWIPFALIMVAQGDYVAAGVVVFFGAVVNGFFIDNVVR 296

Query: 298 PFLVGG------------PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           P L+               +    L T      G+   G++GLF GPV+ A+   I+   
Sbjct: 297 PMLIQKISLSLGGASEELAVANHTLITVLSTFAGLIHFGMIGLFFGPVIAAMAITIFDVY 356

Query: 346 IMAIKENKEK 355
                +  ++
Sbjct: 357 AHKNSDLLDR 366


>gi|86133547|ref|ZP_01052129.1| protein of unknown function DUF20 [Polaribacter sp. MED152]
 gi|85820410|gb|EAQ41557.1| protein of unknown function DUF20 [Polaribacter sp. MED152]
          Length = 343

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 63/349 (18%), Positives = 133/349 (38%), Gaps = 23/349 (6%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSF---ISKKEESSTF 61
           ++ P+ I +  ++ +I+     +     P LS ++   T + +   +   + KK  +   
Sbjct: 4   VIAPKIIRQVFVLLLIVFFAVLIFTELIPYLSGVLGAITIYVLLRKWMVILIKKNWNPDV 63

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A++         ++P+  + +    ++ E V       +      R +    G   +S 
Sbjct: 64  AAILLMFLSFICILLPVTGIIFMLGEKIGEAVENSEEIARVVQNKIRTIESEYGYDLSSR 123

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           + T+ +S                   +I      F     +  + I  M   L++   + 
Sbjct: 124 INTEEIS------------------TWISSNLETFAGSTFNIFIGIGLMYFILYYMLTNR 165

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   L      +     K I      ++RS  +G+ ++AI +G++    + + G+   
Sbjct: 166 RRLKDSLYEYIP-ISNKNLKIIGAESQAMVRSNAIGIPLVAIAQGIIALIGFLIFGIRDP 224

Query: 242 VALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
               +I  I +MIP  G  I    V I  +  GN   A  + ++G + +   D  +R FL
Sbjct: 225 FFWFIIVTIGSMIPFVGTLIGILPVFILSMSYGNTVGAWGILIYGLVVVGSTDNIIRLFL 284

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           +     +  L T  G++ GV   G +GL  GP+L++L  V+ +      
Sbjct: 285 LKKLDNVHPLITLIGVIVGVPLFGFIGLIFGPLLISLFLVVVRIYKKEF 333


>gi|21228979|ref|NP_634901.1| hypothetical protein MM_2877 [Methanosarcina mazei Go1]
 gi|20907519|gb|AAM32573.1| hypothetical protein MM_2877 [Methanosarcina mazei Go1]
          Length = 347

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 63/345 (18%), Positives = 131/345 (37%), Gaps = 7/345 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +  ++I+ +  V +Y +  +   +    I+  T  P+Y   + K   +    A++  +  
Sbjct: 9   LALFLIVALSAVIIYAIFPYVDYLFGGFILFITFKPLYRFLLKKTRLNRQVSALLVIIIS 68

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + L ++PL FL    ++E+++++      NQ  I     + D     + S          
Sbjct: 69  IFLVLIPLFFLLSMVIIEIQQIL-----LNQEAIMATIEVGDRLFNNFFSRFGISENIFQ 123

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            + +      L T  I+F+               + ++ M    ++      S   Q   
Sbjct: 124 INFEERV-MDLATQIINFLSLLVVGSIQSISHRAIGLLIMYFLFYYLLTGEESDFMQNLF 182

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L           +      ++R+T +    IA+ EG +L  ++ + GV      G I A+
Sbjct: 183 LAIPFNTKNTVILLNEFRNIVRTTLIASGAIAVIEGGILIVSFLIFGVQGAFLWGSIAAV 242

Query: 251 MAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++ +P  G PI +    I   ++ +   A  + + G           RP +     K+  
Sbjct: 243 LSFLPVVGTPIIWIPAVIIQFLQQDYVAAAGILITGIFLSVSDSSFFRPVIQKKVGKIHP 302

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             +  G+  G+   GL+G+ IGP+L+A   +  K        +KE
Sbjct: 303 FQSLLGIFIGIPLFGLVGIIIGPLLLAYFYLTVKMFSEEYLSDKE 347


>gi|218886800|ref|YP_002436121.1| hypothetical protein DvMF_1707 [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757754|gb|ACL08653.1| protein of unknown function UPF0118 [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 504

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 57/358 (15%), Positives = 118/358 (32%), Gaps = 46/358 (12%)

Query: 8   PQGIMRWMIMFIILVSLYFL-KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           P  +   ++  + +   + L + F   +  A+++   + P+      +  +     A   
Sbjct: 113 PTRVWLALLAVVAVGIGWLLARPFIHTLAVAIVVAALAAPLQERIARRVRQ-PDLAAAST 171

Query: 67  TVSVMCLFIVPLLFLFYYGMLE-----------------------------MKELVSKVV 97
            ++++     PL       + +                                      
Sbjct: 172 ILTLLLGVAAPLAVFVAALIPQARALARAAMAFYAASGNGGSDAAAGAAAGAATGAVPGA 231

Query: 98  LANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFG 157
                 +P P  L  +      S   T+ L+           F   +    +   A + G
Sbjct: 232 AVAAGSLPAPVELG-LARLHELSVWVTRTLADFGIDAPDLADFDPASLRGTLLGAARQAG 290

Query: 158 MIFLD-----------YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
              L                 + M+  L+F  RDG  +   +  +   L  A   ++   
Sbjct: 291 ETVLHGITAGVGNAVYLFGHFLLMLFILYFLLRDGRQMMAFVKRVSP-LAHAQEDRLLTA 349

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAV 265
           +  V RS F+G  ++A+ +G++    + L G+P  +  G   +  AMIP  G  + +   
Sbjct: 350 LRGVARSVFMGGVLVAVFQGVIGAVGFALVGLP-ALFWGFAMSFAAMIPVVGTALIWAPA 408

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
           + YL + G  + A  L  W A+ +   D  LR + +     +P L  F  ++GG+   
Sbjct: 409 TAYLYLSGETWRAVFLLGWCAVLVSSSDGLLRAWFMKEGAGIPMLYLFLAILGGLNMF 466


>gi|289192288|ref|YP_003458229.1| protein of unknown function UPF0118 [Methanocaldococcus sp.
           FS406-22]
 gi|288938738|gb|ADC69493.1| protein of unknown function UPF0118 [Methanocaldococcus sp.
           FS406-22]
          Length = 334

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 61/336 (18%), Positives = 148/336 (44%), Gaps = 19/336 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + + + +I+ ++++ LY L  F   +  +    + + PIY+    K   + T  A +A  
Sbjct: 7   KYLRKGVIVGLLIMLLYILWPFIDVLAYSCAFAYMALPIYNLLRKKF--NKTISAGLA-- 62

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + ++IVP++ +  Y +L   E++      + +   +  ++++I   ++ S +  + + 
Sbjct: 63  --ISIYIVPIMVITIYTILTFMEII-----LSFNTKSIEPYINEI-LSIYNSFMLERIID 114

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           + Q L    + F+K     ++    S   +      +  I ++   F+F RDG  +   +
Sbjct: 115 NGQFLTKYIDEFVK-----YLINQVSGKIVDIGYLIIKAIMVLFLTFYFLRDGDKVKNLI 169

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S     +    +     +    ++ F+    ++I   ++    Y +  VP      +IT
Sbjct: 170 ISFVPDEYKEKMRIYLSYLHDSYKNLFISCVSLSIIITILSYIGYLIVAVPYAELFAIIT 229

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIK 306
            I A++P  G  + + +++IY  +  +   A  +F++G + L I  D  +RP+LV   + 
Sbjct: 230 GIFALLPILGGWMVYISIAIYFFLMHDYTKAVFMFIYGELFLSIAPDFVIRPYLVKKEVD 289

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +  +      +    ++GL G  IGP+++  +   +
Sbjct: 290 IHPVLVVIAFLMAPLSLGLSGFAIGPLVVGALNAFY 325


>gi|154149249|ref|YP_001406317.1| acid membrane antigen A [Campylobacter hominis ATCC BAA-381]
 gi|153805258|gb|ABS52265.1| acid membrane antigen A [Campylobacter hominis ATCC BAA-381]
          Length = 352

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 57/365 (15%), Positives = 133/365 (36%), Gaps = 23/365 (6%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +  +  +I+ ++   +Y  + F   +   ++I  ++  +    +   +      AV
Sbjct: 1   MKTSKIFLSGVILIMLGWVIYLFQSFLLAISIGVLIAVSTAGLNEKILKFTKNRQIVSAV 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           + TV +  LF VP ++        +  +   V L ++    +  +   +P      E   
Sbjct: 61  LTTVILCVLFFVPFIYAIAEIAKSLANI--DVALLDKTLSYIKNYEFSLPNFAKNFEPDI 118

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           K      + + + +  L          +AS       ++ L +  +II  FF    G  I
Sbjct: 119 KSFIANLNFEGIIKQIL---------SYASGIAKSSANFALQMFLIIIFYFFTNLYGRDI 169

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
                     +       + +     +   F    + A+ +G +      + G    +  
Sbjct: 170 LNFFKK-SIPIAENELDYMFKQTSNTMSVVFYSTILNAVLQGFLFSIIAAIYGFDM-IFF 227

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPF--- 299
            ++ A  ++IP  G  + +  + +Y L  GN   A  + L+  I +  + D  ++P    
Sbjct: 228 AILYAFCSLIPIIGGALCWAPLGLYELANGNFSAAVIISLYSIIVISTIADNFIKPVIIR 287

Query: 300 -----LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                LV  P  +  +  FF ++ G+ T G  G+ +GP ++ L   +    +    + + 
Sbjct: 288 FINSKLVDNPANINEILIFFAMLAGIGTFGFWGMILGPAILTLFVSVLNLYVDFSNKTEH 347

Query: 355 KISSN 359
           + + +
Sbjct: 348 RKTKH 352


>gi|304315341|ref|YP_003850488.1| hypothetical protein MTBMA_c15960 [Methanothermobacter marburgensis
           str. Marburg]
 gi|302588800|gb|ADL59175.1| conserved hypothetical protein [Methanothermobacter marburgensis
           str. Marburg]
          Length = 335

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 65/356 (18%), Positives = 139/356 (39%), Gaps = 23/356 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M E +        ++++ +IL+S   +   +  +    +  +   P+      +    S 
Sbjct: 1   MIERLRGTITSASFLVLALILLSAIVIYPIWTMLFLGAVFAYIVRPVALRINERIPYLS- 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               ++ +  M + I+PL+ +  + +  +            +  P    L+      +  
Sbjct: 60  ----VSIIIAMIVVIMPLIGIVVFTVDSLI-----------NSTPSLITLARGFDIPYLP 104

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                      +L+ +    L+ +    I               L +   + + F+F RD
Sbjct: 105 GQLQSSGGTLGALRGILTDILRGSINYVI-----DVIQSVPMIALQLFIFLSSTFYFARD 159

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +   +  +       + ++++    +V+ S F G  + A+  G++ G  + L G P 
Sbjct: 160 GERLLSYIRGIIPTEAKPFMRRMASETERVLMSIFYGHFLTALLIGIMAGLGFHLLGYPY 219

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            + LG+IT I  +IP  G   ++T ++IY L+ GNI     + ++G I L  +D  LRP 
Sbjct: 220 AIVLGIITGIFQLIPVIGPWAAYTPLAIYDLVTGNILRGVLVLIFG-IFLSTIDIYLRPK 278

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L G    +  +    G +GG    G+ G  +GP+++ L     +   +     +E 
Sbjct: 279 LSGKYADIHPMIFLVGFLGGPVVWGVAGFIVGPLVLGLAYAALEAYRLGESAAEEN 334


>gi|239905742|ref|YP_002952481.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
 gi|239795606|dbj|BAH74595.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
          Length = 394

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 75/354 (21%), Positives = 136/354 (38%), Gaps = 10/354 (2%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
            E         R  ++ + L ++      L  F   V+ A I+     P+     +  + 
Sbjct: 38  DEHGPLHARYYRPFLLLVFLAAVATVGGLLWPFRHAVILAAILAILLSPLRRRMEAALKG 97

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG--IPVPRWLSDIPG 115
           S    A + T + +   ++P   L      +   L+ + V     G    +   L  +  
Sbjct: 98  SRYLTAALLTAATLIFIVLPAAVLAAVLTSKAGALLVEGVQWWSEGGVASLLDRLQAVAL 157

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
             W   L        Q LK+         G   +       G +   +    + +++ LF
Sbjct: 158 PDWVQGLLDMIPIDSQGLKVSLLGAAGAAGRQLLAMGRGLAGQMA-GFAAQTVMLVLFLF 216

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           +F      + + L  L   L  +  ++++  +  V RS  +G     + +GL      WL
Sbjct: 217 YFLSQAEQVVRGLRLLSP-LRRSQEQELTERLKTVTRSILVGGAAAGLSQGLATMLGLWL 275

Query: 236 AGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
            G+   +  G +  + ++IP  G  +      +YLL  G +  A  L LW  + +  VD 
Sbjct: 276 VGID-PLFWGFVALLASLIPVVGTTLIHVPAIVYLLSLGAMGKAVFLTLWWLVVVSTVDN 334

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            +RPF +    +LP L  F  ++GGV   G LGL  GPV M+L  V+++  + A
Sbjct: 335 VVRPFFIRDGAQLPLLLIFVAIIGGVLLFGPLGLIYGPVSMSLCLVVFQLFVEA 388


>gi|24215055|ref|NP_712536.1| permease [Leptospira interrogans serovar Lai str. 56601]
 gi|45657464|ref|YP_001550.1| putative permease protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24196107|gb|AAN49554.1| permease [Leptospira interrogans serovar Lai str. 56601]
 gi|45600703|gb|AAS70187.1| conserved putative permease protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 376

 Score =  125 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 61/350 (17%), Positives = 141/350 (40%), Gaps = 11/350 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIATVSV 70
              + +F I V     + +    L ALI+   +   +        E     +  I    V
Sbjct: 20  FSILFLFAIGVFFLVFRPYLYSSLMALILYLATRRPHKLLKGYLGEKLQWLVPWIMITLV 79

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             + ++P  F+    + E   ++ K+ ++      +   ++      + ++     +  P
Sbjct: 80  SMIVLLPSYFVIRTLISEALSILFKLRISLSEDKIIETLMNFALLTDFITDNEFFWVKVP 139

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLD-------YCLSIIFMIIALFFFYRDGFS 183
           +     +E ++    +D I    S      L          +++ F ++ LFF Y+DG  
Sbjct: 140 EIYGEFAENYVDILNLDSIYGILSNASSFILGNIELPTGILMNLFFALLVLFFLYQDGKK 199

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + + +            +++ R +   +++   G  II+I +G  +    W+AG+ S   
Sbjct: 200 VERFILDNLP-FSKQLEEQVGRKLTAAVQTVIRGNLIISILQGTAIYILLWIAGISSPFL 258

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
              + A  ++IP  G    +  + +Y L ++ N   A      G     +++  ++P ++
Sbjct: 259 YASLAAFFSIIPVVGTSAVWLPIGLYILFLENNPMMAIFFMGSGLFFYVVLENFVKPRML 318

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
              ++   L  F  L+GG++  G++GL +GPV + L+ ++W    +  +E
Sbjct: 319 DKKLQAHPLLIFLSLIGGIKEFGIMGLVVGPVTVTLVVILWDFWKLYRRE 368


>gi|323144594|ref|ZP_08079182.1| hypothetical protein HMPREF9444_01862 [Succinatimonas hippei YIT
           12066]
 gi|322415603|gb|EFY06349.1| hypothetical protein HMPREF9444_01862 [Succinatimonas hippei YIT
           12066]
          Length = 358

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/319 (15%), Positives = 118/319 (36%), Gaps = 22/319 (6%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
             F   +L ++ +             K  +  +    I T++V    ++PL  L +Y + 
Sbjct: 30  LPFVNGILGSITLYVLLRRPNFYLARKYGKRKSPW--IITIAVTVFILIPLSLLAWYAIE 87

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            ++       +A +      + + +  G    ++     ++   S               
Sbjct: 88  LVQNFDLDPKIAIEKITTTIKKIEEATGFDLITDKSLSFITAQFSNIFNM---------- 137

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
                         ++ +++   I+ LFF    G  +   +  L           + + +
Sbjct: 138 --------LMSGINNFAINVFTAILLLFFLLSGGMKMELYIAKLLP-FSEENKHAVIKRL 188

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVS 266
             ++RS  +G+ ++A+ +G+V    Y L GV + +  GV+T   ++IP  G  I +  + 
Sbjct: 189 HVIVRSNAIGIPLLAVIQGVVATIGYMLCGVNNALLFGVLTGFASIIPIVGTMIVWIPLV 248

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           I     G++ +   L  +    +   D  +R  L         L T FG++ G+   G +
Sbjct: 249 IGQYFDGSLLSTLGLAFYCIAIISQCDNVIRMILQKRMANTHPLITIFGVIAGLPIFGFM 308

Query: 327 GLFIGPVLMALIAVIWKES 345
           G+  GP+++++  +     
Sbjct: 309 GVIFGPLIVSMFLLFVDMF 327


>gi|326424274|ref|NP_762641.2| putative permease [Vibrio vulnificus CMCP6]
 gi|319999660|gb|AAO07631.2| Predicted permease [Vibrio vulnificus CMCP6]
          Length = 360

 Score =  124 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/338 (16%), Positives = 122/338 (36%), Gaps = 5/338 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I  I++V  +    F   +L AL++    +P+  +   K    S+  A +  V  + +  
Sbjct: 26  ITLIVIVCWWAFLPFLPILLWALVLAIALYPLKLAIERKLGLRSSRSATLVAVIGVLVLG 85

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLK 134
            P   +      +  E +                + + P  G      W +   +     
Sbjct: 86  TPTAMVGNSFASKTLEALDSYRNGTLAVSKPTDSVKEWPLVGEKVYAAWDEAAVNLPVFI 145

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
              +  +K+    ++   A+           ++I   I L +      SI +   S  + 
Sbjct: 146 DKHQPQIKS-IFGWVFDSAAGAAKSVFVLIGAVIIAGIMLAWAEPASASIRKIFISFTDP 204

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           +       + ++    +R   +G+  IA    ++ G+   LAGVP+     +I  + A++
Sbjct: 205 IKGPS---LHKLTTATLRQVAVGIIGIAFLTAMIFGAIVALAGVPAASLFTLIALVFAIV 261

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
                +        L    +      +F    I    +D  L+P ++G  + +P      
Sbjct: 262 QLPVTVVALVAVAVLWSGDSGTAHNAIFTVLIIAASFIDNFLKPIILGRGLDVPMPIILI 321

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           G VGGV + G+LG+F+G   +A    ++ + + +  + 
Sbjct: 322 GAVGGVMSGGILGMFVGAAFLATGYQVFMQWVESESKQ 359


>gi|240103191|ref|YP_002959500.1| hypothetical protein TGAM_1134 [Thermococcus gammatolerans EJ3]
 gi|239910745|gb|ACS33636.1| Conserved hypothetical protein [Thermococcus gammatolerans EJ3]
          Length = 335

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 63/334 (18%), Positives = 141/334 (42%), Gaps = 29/334 (8%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + I+ +S   ++    P+   +++ + ++P++     +     +  A+I T  ++ L  +
Sbjct: 15  LIILYLSWRTVRPLVTPLFFGVLLAYIAYPLHMRLRRRFSAHES--ALILTAIMIGLGTI 72

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L+F     +  +      V         V  WLS +         + +           
Sbjct: 73  LLVFFTLLSIKLVNRFYMNVK-------DVLAWLSSLQFSGTLQTFFGQ----------- 114

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               +++  +  +  + S F      Y L +I  + A ++    G  + + + SL     
Sbjct: 115 ----VQSQIVPKLTDYVSSFTFSVPKYLLQLIVFLFAFYYALVYGEKLREFILSLVPENQ 170

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP---SHVALGVITAIMAM 253
             +  +I     K + +      ++ + +G ++   Y + GV    + +  G +T + + 
Sbjct: 171 APFIVEILNRTDKTLDALVRAWLLLNVAKGFLMTIGYIIFGVGDVYTAIIAGFLTFLFSF 230

Query: 254 IPGG-APISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLVGGPIKLPFLP 311
           +P     + + A +IYL +KG++  A  + ++GA+ +  + D T+RP LV    +L    
Sbjct: 231 VPLLEGWMLWVAGAIYLYMKGSLLGAIGIAVYGAVLVSPLPDYTVRPMLVAKDAELDETL 290

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            F G++GG    GL GL +GPV++++  V+ KE 
Sbjct: 291 VFIGMLGGTWAFGLKGLLLGPVILSIALVLLKEW 324


>gi|59714262|ref|YP_207037.1| inner membrane protein [Vibrio fischeri ES114]
 gi|59482510|gb|AAW88149.1| predicted inner membrane protein [Vibrio fischeri ES114]
          Length = 362

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 58/346 (16%), Positives = 125/346 (36%), Gaps = 7/346 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           +  ++L     LK F   ++   II    +PI + F  K   S + +++I TV  + L +
Sbjct: 21  LSVLVLWCFSILKPFLLLMVWGGIIATALYPIVAFFSKKTALSESKVSIILTVIGVLLLL 80

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +PL+ L         EL       +         + D P     +  +    S      +
Sbjct: 81  IPLVALSTGIYTSGTELFLGYQDGSIAIPKPKERMQDWPIIGHEAYSFMSLASSNLESLL 140

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              +                 G  F+ + +S I   +    F  +     +    +   L
Sbjct: 141 FKYSAEVKVVAAKAASLVGSLGGGFIQFIVSTIIAGV----FMANAAKCERAFILITNRL 196

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA--LGVITAIMAM 253
              + +++ ++    IRS   G+  +A+ +  + G    + G+ + V      +  + A+
Sbjct: 197 TGKHGEELIKLSKITIRSVVQGVIGVAVIQATMAGLGMAVVGISASVLGLWVFLVLVFAI 256

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           I     +    +  Y+             +W  + +   D  L+P L+     +P +   
Sbjct: 257 IQLPPILILLPIIFYVFSVDTTTAGVLFAVWCVL-VSSSDAILKPVLLSRGSHIPIIVIL 315

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            G +GG+   G++GLF+G V+++L   ++   +    E  +    N
Sbjct: 316 LGALGGMAMSGIVGLFVGAVVLSLTYQMFTVWLKNEAEETQNAKDN 361


>gi|261402505|ref|YP_003246729.1| protein of unknown function UPF0118 [Methanocaldococcus vulcanius
           M7]
 gi|261369498|gb|ACX72247.1| protein of unknown function UPF0118 [Methanocaldococcus vulcanius
           M7]
          Length = 331

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 52/316 (16%), Positives = 124/316 (39%), Gaps = 22/316 (6%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
            F      A    + + PIY+  + K   + T  A +A    + ++++P+  +  Y    
Sbjct: 27  PFIDTFAYACAFAYMALPIYNLLVKKL--NRTVSAALA----IGIYLIPITLITIYAFST 80

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
              +V  +          P  ++     +  + L  + +++ + +       +K      
Sbjct: 81  FLNIVLSI---------DPNSINQYFLSVLNNPLLDRIITNDEMITKYVNELIKYAISQL 131

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
             +             +  I ++   F+F RDG+     + S     +    +   + + 
Sbjct: 132 SGKII-----DVGYLAIKTILVLFITFYFLRDGYKFKDVVISFTPENYKEKMRIYLQYLH 186

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
              ++ F+    ++I   ++    Y +AGV       +IT + A++P  G  + + A++I
Sbjct: 187 DSYKNLFISCVSLSIIITILSYIGYLIAGVKYAELFAIITGVFALLPILGGWMVYIAIAI 246

Query: 268 YLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           Y  +  N   A  +F++G + L I  D  +RP++V   + +  +      +    ++GL 
Sbjct: 247 YFFLTHNYAKAIFIFIYGELFLSIAPDFVIRPYIVKKEVDIHPVLVVVAFLIAPLSLGLS 306

Query: 327 GLFIGPVLMALIAVIW 342
           G  IGP+++  +   +
Sbjct: 307 GFAIGPLVVGALNAFY 322


>gi|326423645|ref|NP_759024.2| putative permease [Vibrio vulnificus CMCP6]
 gi|319998997|gb|AAO08551.2| Predicted permease [Vibrio vulnificus CMCP6]
          Length = 360

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 56/338 (16%), Positives = 121/338 (35%), Gaps = 5/338 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I  I++V  +    F   +L AL++    +P+  +   K    S+  A +  V  + +  
Sbjct: 26  ITLIVIVCWWAFLPFLPILLWALVLAIALYPLKLAVERKLGLRSSRSATLVAVIGVLVLG 85

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLK 134
            P   +      +  E +                + + P  G      W +   +     
Sbjct: 86  TPTAMVGNSFASKTLEALDSYRNGTLAVSKPTDSVKEWPLVGEKIYAAWDEAAVNLPVFI 145

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
              +  +K+    ++   A+           ++I   I L +      SI +   S  + 
Sbjct: 146 DKHQPQIKS-IFGWVFDSAAGAAKSVFVLIGAVIIAGIMLAWAEPASASIRKIFISFTDP 204

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           +       + ++    +R   +G+  IA    ++ G+   LAGVP+     +I  + A++
Sbjct: 205 IKGPS---LHKLTTATLRQVAVGIIGIAFLTAMIFGAIVGLAGVPAASLFTLIALVFAIV 261

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
                +        L    +      +F    I    +D  L+P ++G  + +P      
Sbjct: 262 QLPVTVVALVAVAVLWSGDSGTAHNAIFTVLIIAASFIDNFLKPIILGRGLDVPMPIILI 321

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           G VGGV + G+LG+F+G    A    ++ + + +  + 
Sbjct: 322 GAVGGVMSGGILGMFVGAAFFATGYQVFMQWVESESKQ 359


>gi|154248269|ref|YP_001419227.1| hypothetical protein Xaut_4349 [Xanthobacter autotrophicus Py2]
 gi|154162354|gb|ABS69570.1| protein of unknown function UPF0118 [Xanthobacter autotrophicus
           Py2]
          Length = 368

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 68/337 (20%), Positives = 131/337 (38%), Gaps = 7/337 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           +  +++     +K F  P+L  LII   S P++    +     +   A +  +  + L +
Sbjct: 27  LALLLIWCFTIMKPFLNPILWGLIIAIASHPLFVRLRAAVHGRTAVAATLYVLLALALLV 86

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD-IPGGMWASELWTKHLSHPQSLK 134
           +P   L    ++ +K L   +        P P  +   I  G      W    ++     
Sbjct: 87  LPAYLLADTLIVSLKLLAHHLADGTLRVPPPPDSVRTWILVGDPIHRFWLLSSTNLDQAF 146

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                 L T G   +   +       L   L  I  I     F  +  S  +    +   
Sbjct: 147 ASITPELTTMGRSMVSGVS-----DVLVGFLEFIIAIFVAAAFMANAASGQRIAGDVAIR 201

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L     +  + +  + IRS   G+  +A+ + L+ G  +  A +P+   L ++  I+A++
Sbjct: 202 LAGEGGRSYADLAVRTIRSVTKGIIGVALIQSLLAGLGFLAADIPAAGLLALLCLIIAIV 261

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
                +    V IY     +   A    +W    + +++  LRP ++   + +P L  F 
Sbjct: 262 QLPLVLVLLPVVIYAFTILDPVPAVVFAVWCTG-VSLIEHVLRPLMLARGVDVPMLVVFI 320

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           G +GG+ T G+LGLF+GPV++AL   +    + A   
Sbjct: 321 GAIGGLLTSGVLGLFVGPVVLALGYTLVLAWLQAAPR 357


>gi|325105490|ref|YP_004275144.1| protein of unknown function UPF0118 [Pedobacter saltans DSM 12145]
 gi|324974338|gb|ADY53322.1| protein of unknown function UPF0118 [Pedobacter saltans DSM 12145]
          Length = 337

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 65/350 (18%), Positives = 140/350 (40%), Gaps = 22/350 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
                ++  +++ + ++ L+ LKG+    L A++I     P Y+ F  K   S +  A  
Sbjct: 7   KQRNNLVLIVLILMGILILFSLKGYITSFLGAIVIYTLFKPTYTLFNQKL--SKSISAAF 64

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +    + I+P   L Y        + +KV+        +   L  I      ++    
Sbjct: 65  IILISFIIIIIPFFVLGYM-------ITNKVMALRTDNFQLKAILYKI------NDFAGI 111

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           HL+ P+ L    +        + +      F     D  L ++ M   L+F +       
Sbjct: 112 HLNQPKLLDKYLDKL-----TNLVQELFPSFLGGAFDVFLGLVLMYFILYFMFVQSERFE 166

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L      L   + ++ +  +     S  +G  IIA+ +G ++  A+++AG+   +  G
Sbjct: 167 NGLIKYAP-LREYHTRQFAEELKNTTYSNVIGQGIIALIQGSLVSLAFFIAGLEDAIFWG 225

Query: 246 VITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           V++  ++ +P  GAP+     ++ L + G+ +NA  + ++  + L  +D  +R  +    
Sbjct: 226 VVSVFLSFMPVIGAPLVTLPAAVILYLNGDHYNAIFIVMFTLLILINIDNVIRFMINKHF 285

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                + T  G++ G+   G +G+  GP+L+     +       IK   +
Sbjct: 286 ADTHPIVTVIGVIIGIPLFGFVGIVFGPLLLLWFMHLIAIYEDDIKAENK 335


>gi|163785444|ref|ZP_02180051.1| hypothetical protein HG1285_05465 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879288|gb|EDP73185.1| hypothetical protein HG1285_05465 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 286

 Score =  122 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 63/265 (23%), Positives = 118/265 (44%), Gaps = 6/265 (2%)

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + E+ +L    +        +  ++  IP   +  E    +L    ++K+  + FLK
Sbjct: 15  AVFVNELTKLYPIFINKISKSDSIESFILSIPVISYLHEKIISYLQTL-NIKVDIQDFLK 73

Query: 143 TNGIDFIPRFASRFGMIFLDY---CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
           T     +    S+   IF+D+    L II MII +FF ++DG +    +  L   +    
Sbjct: 74  TAISYVVNFLISKGRTIFIDFSFIVLGIILMIITIFFLFKDGKNFYIWIYKLIP-MEEKE 132

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGA 258
              I+      I+   LG  + AI +G++    Y+ +GV   +   +IT   A IP GGA
Sbjct: 133 KNYIAVSSYNTIQGIVLGSFLTAIAQGILSFIGYYFSGVGFSLFWAIITFFSAFIPIGGA 192

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            + +  +++YL     +       L+G   +  VD  ++P ++GG   +  L   F + G
Sbjct: 193 SLIWVPIAVYLFFTKGLIVGILFSLYGTFIISTVDNIIKPIVIGGKANIHPLIMIFAIFG 252

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWK 343
           G+   G +G+FI P+++ +I  +  
Sbjct: 253 GLNLFGFVGVFIAPIIVVIIYNLLN 277


>gi|150402118|ref|YP_001329412.1| hypothetical protein MmarC7_0191 [Methanococcus maripaludis C7]
 gi|150033148|gb|ABR65261.1| protein of unknown function UPF0118 [Methanococcus maripaludis C7]
          Length = 336

 Score =  122 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 57/337 (16%), Positives = 130/337 (38%), Gaps = 21/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + IMR  ++      L+    F   +  A    + + P ++        +      +  +
Sbjct: 7   RFIMRVFVLISFASVLFVAFPFLDTIAFACAFAYMTEPFFNVIKRYTGRN------LGAI 60

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +  VP L L    + ++ E ++ +           ++++       A E     +S
Sbjct: 61  ICILMITVPALSLVVLILTDVVEFLNTLN-IQSFVDNSIQFVNYFGLQNIAKEDLNSIIS 119

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +    +           + + AS+   + L +   +   I   ++F +DG+     +
Sbjct: 120 ELWTFLKPT-----------VNKMASQIYGLPLLFIKGL-VTIFLTYYFLKDGYRFKDAI 167

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 ++    +   R + +  ++ F+   + A   GL+  + +W  G+P+ V LG ++
Sbjct: 168 MPHVPEVYHVQTELFIRKLHEAYKNLFVVNALTAFTVGLISIAGFWAIGIPNPVTLGALS 227

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIK 306
            I+ ++P  G    +  +S+Y +  G    A  LF +G I L +  D  +RP LV     
Sbjct: 228 GILTLLPIVGGWTIYMPLSVYYVAVGMYSKAVLLFGFGVIFLSLAPDFAIRPRLVNHESS 287

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +         + G   +G+ G  +GP++M     I++
Sbjct: 288 IHPALALVAFLMGPLALGVTGFALGPLIMGTFDAIFR 324


>gi|134045790|ref|YP_001097276.1| hypothetical protein MmarC5_0751 [Methanococcus maripaludis C5]
 gi|132663415|gb|ABO35061.1| protein of unknown function UPF0118 [Methanococcus maripaludis C5]
          Length = 336

 Score =  122 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 60/337 (17%), Positives = 137/337 (40%), Gaps = 21/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + IMR  ++      L     F   +  A    + + P +++   ++    T  A+++ +
Sbjct: 7   RFIMRIFVLVSFTAVLMIAVPFLDTIAFACAFAYMTEPFFNAV--RRYAGRTLGAILSIL 64

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V     VP L L    + ++ E ++ + + +     + ++++ +     A E   + LS
Sbjct: 65  MVT----VPALSLVVLILSDVVEFLNTLNVPSLVDTTI-QFVNYLGLQNIAQEDLNRILS 119

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +    +           I + A +   I L +   +   +   ++F +DG      +
Sbjct: 120 ELWTFLKPT-----------INKMAEQIYGIPLLFIKGL-ITVFLTYYFLKDGHRFKDAI 167

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 ++    +   R + +  ++ F+   + +   GL+  + +W  G+P+ V LG ++
Sbjct: 168 MPHVPEVYHVQTELFIRKLNEAYKNLFVVNALTSFTVGLISIAGFWAIGLPNPVTLGALS 227

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIK 306
            I+ ++P  G    +  +S+Y +  G    A  LF +G I L +  D  +RP LV     
Sbjct: 228 GILTLLPIVGGWTIYMPLSLYYIAVGMYTKAILLFGFGVIFLSLAPDFAIRPRLVNHESD 287

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +         + G   +G+ G  +GP++M     I++
Sbjct: 288 IHPAIALVAFLMGPLALGVTGFALGPLIMGTFDAIFR 324


>gi|298675240|ref|YP_003726990.1| hypothetical protein Metev_1335 [Methanohalobium evestigatum
           Z-7303]
 gi|298288228|gb|ADI74194.1| protein of unknown function UPF0118 [Methanohalobium evestigatum
           Z-7303]
          Length = 356

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 58/346 (16%), Positives = 136/346 (39%), Gaps = 5/346 (1%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +++ + ++++Y  K F   V+ ++ + +  +P+YS    K  +S    + I+ +S + + 
Sbjct: 14  LLLLVSIIAIYLTKEFVPVVVFSIFLTYVLYPVYSYLE-KVTKSERIASSISVLSALFIL 72

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            + +  L    + E+ +L++      +  I + + L D            +        +
Sbjct: 73  GLCIYLLLSSAVREISKLITSPDQIREPIIALEKELLDFISSTDYLSFIAESYISNGLSQ 132

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
            +           ++  F + F      Y +S +  ++  ++F  D   I  Q+  +   
Sbjct: 133 PVVTVI--NWVSPYVKTFLTSFITNTPLYLISFVLTLLFTYYFLIDARRIRAQIMDVIPE 190

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                       +  +  + F    + +   G++    ++L G+P  V LG+   ++ ++
Sbjct: 191 KNKHVVSLFINELNVIYYNLFNIFFVTSFLTGVIASVGFFLLGIPYPVILGMAVFLLTLL 250

Query: 255 P-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI-VDKTLRPFLVGGPIKLPFLPT 312
           P  GAP+ +    IY LI  +   A  + L+G   L I  D  +RP L      +  + T
Sbjct: 251 PLVGAPVIYIPFFIYYLIIQDYATAIIILLFGIFILSIFPDSFIRPRLAKNKASIHPVIT 310

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                  +  +G  G  +GP++   +   ++  I    +  E+  S
Sbjct: 311 LLSFTAPIFVIGFTGFIVGPLVYGFLLAFYRTKIKIKYQTDEEPES 356


>gi|197337673|ref|YP_002158735.1| hypothetical membrane spanning protein [Vibrio fischeri MJ11]
 gi|197314925|gb|ACH64374.1| hypothetical membrane spanning protein [Vibrio fischeri MJ11]
          Length = 362

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 58/346 (16%), Positives = 123/346 (35%), Gaps = 7/346 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           +  ++L     LK F   ++   II    +PI + F  K   S + +++I TV  + L +
Sbjct: 21  LSVLVLWCFSILKPFLLLMVWGGIIATALYPIVAFFSKKTALSESKVSIILTVIGVLLLL 80

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +PL+ L         EL       +         + D P     +  +    S      +
Sbjct: 81  IPLIALSTGIYTSGTELFLGYQDGSIAIPKPKERMQDWPIIGHEAYSFMSLASSNLESLL 140

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              +                 G  F+ + +S I   +    F  +     +    +   L
Sbjct: 141 FKYSAEVKVVAAKAASLVGSLGGGFIQFIVSTIIAGV----FMANATKCERAFILITNRL 196

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA--LGVITAIMAM 253
              + +++ ++    IRS   G+  +A+ +  + G      G+   V      +  + A+
Sbjct: 197 TGKHGEELIKLSKVTIRSVVQGVIGVAVIQATMAGLGMAAVGISVSVLGLWVFLVLVFAI 256

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           I     +    +  Y+             +W  + +   D  L+P L+     +P +   
Sbjct: 257 IQLPPILILLPIIFYVFSVDTTTTGVLFAVWCVL-VSSSDAILKPVLLSRGSHIPIIVIL 315

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            G +GG+   G++GLF+G V+++L   ++   +    E  +    N
Sbjct: 316 LGALGGMAMSGIVGLFVGAVVLSLTYQMFTVWLKNEAEETQNAKDN 361


>gi|297619520|ref|YP_003707625.1| protein of unknown function UPF0118 [Methanococcus voltae A3]
 gi|297378497|gb|ADI36652.1| protein of unknown function UPF0118 [Methanococcus voltae A3]
          Length = 360

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 58/336 (17%), Positives = 135/336 (40%), Gaps = 20/336 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             I++   +F  ++ +Y +  F   +   +   + + P Y  F  K   S +  A+++ +
Sbjct: 7   NIILKVGSLFCFMLMVYIMLPFIDAISFGIAFAYITKPAYDRFRRKF--SKSTSAILSIL 64

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +    +  +L +    +          +  +     V   +S I   ++   L      
Sbjct: 65  VLTIPVLATILIIVEQLI-----FYLLNLDLSTLSTSVSTLISKI--SIYNINLSNYWTP 117

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               L    E  L                 +     + ++ ++   ++F +DG  +    
Sbjct: 118 ISSDLFKFLEGILNGLLGQL---------SVVPLLMIKVLIILFMTYYFLKDGHKLLNAT 168

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                  + A+ K  ++ +    ++ F G  + ++   ++    Y L G+P+ +ALGV+T
Sbjct: 169 LIHIPECYQAHVKIFAQKLNDSYKNMFTGTALTSLIAMVIAIIGYQLLGIPNALALGVLT 228

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLVGGPIK 306
            I  ++P  G    +  ++IY L++G I  A  ++++G I L FI+D  +RP +V     
Sbjct: 229 GICVLLPVVGGWGIYMPLAIYYLLQGEILYALTIYMFGTIFLSFILDFYIRPKVVKSGGN 288

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +  + T    +    T+G+ G  +GP+++     ++
Sbjct: 289 VHPVMTLTAFLIAPLTLGIAGFALGPIIVGAFDSLY 324


>gi|254173525|ref|ZP_04880197.1| membrane protein [Thermococcus sp. AM4]
 gi|214032217|gb|EEB73047.1| membrane protein [Thermococcus sp. AM4]
          Length = 335

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 60/340 (17%), Positives = 139/340 (40%), Gaps = 29/340 (8%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + I+ +S   ++    P+   +++ +  +P++     +     +  A++ T  ++ L   
Sbjct: 15  LVILYLSWRTVRPLVTPLFFGVLLAYIVYPLHMRLRRRFSAHES--ALVLTAIMIGLGTA 72

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L+F     +  +      V         V  WLS +         + +           
Sbjct: 73  LLVFFTLISIKLVNRFYMNVK-------DVLVWLSSLQFSGTLQTFFEQ----------- 114

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               +++  +  +  + S F      Y L ++  + A ++    G  +   + SL     
Sbjct: 115 ----VQSQIVPKLTDYVSSFTFSVPKYLLQLVVFLFAFYYALVYGEKLRGFILSLVPGNQ 170

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP---SHVALGVITAIMAM 253
             +  +I     K + +      ++ + +G ++   Y + GV    + +  G +T + + 
Sbjct: 171 APFMVEILDRTDKTLDALVRAWLLLNVAKGFLMTIGYVIFGVGDVYTAMIAGFLTFLFSF 230

Query: 254 IPGG-APISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLVGGPIKLPFLP 311
           +P     + + A ++YL ++G++  A  + ++GA+ +  + D T+RP LV    +L    
Sbjct: 231 VPLLEGWMLWVAGAVYLYMRGSLLGAIGISVYGAVLVSPLPDYTIRPMLVAKDAELDETL 290

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            F G++GG    GL GL +GPV++++  V+ KE      E
Sbjct: 291 VFIGMLGGTWAFGLKGLLLGPVILSIALVLLKEWKKRNSE 330


>gi|300114287|ref|YP_003760862.1| hypothetical protein Nwat_1663 [Nitrosococcus watsonii C-113]
 gi|299540224|gb|ADJ28541.1| protein of unknown function UPF0118 [Nitrosococcus watsonii C-113]
          Length = 547

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 61/327 (18%), Positives = 115/327 (35%), Gaps = 10/327 (3%)

Query: 5   MLNPQGIMRWMIMFII-LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           M   + +  W+I F+  L+S+Y L+    P ++ +++ +   P+      K   S T   
Sbjct: 1   MNARRQLRFWLIGFLFFLISVYLLREILLPFVAGMVVAYLIDPLCDWLERK-GCSRTAAT 59

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            + T   + +  + LL L      E+  L+  +              S  P      E W
Sbjct: 60  SLVTAGFILVVSMVLLLLVPLLRSEIVHLIETLPSLIARAQD-----STWPWLQLLQERW 114

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
           +  +S  Q         L       +    S  G+   +    +  M +  F+  RD   
Sbjct: 115 SIDMSQIQDAAREQAGMLVKWVGKTVGTILSS-GLALANLLSLVFIMPVVTFYLLRDWDK 173

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  Q+DSL         ++  +++  V+     G   + +  G        L G+   + 
Sbjct: 174 LIAQIDSLLPRKHAPVIREQVKLIDTVLSGFIRGQFSVCLLLGAFYAVGLALIGLDFGLM 233

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--DKTLRPFLV 301
           +G++  +++ IP    I    V + L             + G   +  V     L P LV
Sbjct: 234 VGMLAGLLSFIPYVGTIVGFIVGLGLAFVQFSEWTPIFLVAGVFIIGQVIEGNVLTPRLV 293

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           G  + L  +   F L+ G    G LG+
Sbjct: 294 GTRVGLHPVMVIFALLAGGALFGFLGI 320


>gi|159906093|ref|YP_001549755.1| hypothetical protein MmarC6_1711 [Methanococcus maripaludis C6]
 gi|159887586|gb|ABX02523.1| protein of unknown function UPF0118 [Methanococcus maripaludis C6]
          Length = 336

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 59/337 (17%), Positives = 128/337 (37%), Gaps = 21/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + IMR  ++      L     F   +  A    + + P +++              I  +
Sbjct: 7   RFIMRIFVLVSFAAVLMIAVPFLDTIAFACAFAYMTEPFFNAVRRYTGR------TIGAI 60

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +  VP L L    + ++ E ++ +           +++S +     A E     LS
Sbjct: 61  LSILMVTVPALSLVVLILTDVVEFLNTL-DVQSLIDNTIQFVSYLGLQNIAQEDLNPILS 119

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +    +           I + A +   + L +   +   +   ++F +DG      +
Sbjct: 120 ELWTFLKPT-----------INKMAEQIYGLPLLFIKGM-ITVFLTYYFLKDGHRFKDAI 167

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 ++    +   R + +  ++ F+   + A   GL+  + +W  G+P+ V LG ++
Sbjct: 168 MPHVPEVYHVQTELFIRKLHEAYKNLFVVNALTAFTVGLISIAGFWAIGLPNPVTLGALS 227

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIK 306
            I+ ++P  G    +  +S+Y +  G    A  LF +G I L +  D  +RP LV     
Sbjct: 228 GILTLLPIVGGWTIYMPLSLYYIAVGMYSKAILLFGFGVIFLSLAPDFVIRPRLVNQESD 287

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +         + G   +G+ G  +GP++M     I++
Sbjct: 288 IHPAIALVAFLMGPLALGVTGFALGPLIMGTFDAIFR 324


>gi|227501581|ref|ZP_03931630.1| integral membrane protein [Corynebacterium accolens ATCC 49725]
 gi|227077606|gb|EEI15569.1| integral membrane protein [Corynebacterium accolens ATCC 49725]
          Length = 495

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 60/338 (17%), Positives = 121/338 (35%), Gaps = 18/338 (5%)

Query: 11  IMRWMIMFIILVSLY-FLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
            +R +I+ + L ++Y  L  F     PVL ALII     PI     +K    +   A+  
Sbjct: 64  AVRLLIIGVFLFAIYHVLGSFWQGILPVLLALIICTVLNPIARWMRTK-GLPAGLAAITT 122

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +         +  +    M + + L  + V   Q    +  W    P  + + ++ T  
Sbjct: 123 ILISSAAVGGLIASVAPDFMRQSQSLYLQTVSGIQ---QLQLWAQGPPLNLDSDDMSTYI 179

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                 L+  +     +                   + +++  +++  FFF +DG     
Sbjct: 180 DEAAGWLQERAGVIAGSVFTGI---------GNATSFFITVFIVLVLTFFFLKDGTKFLP 230

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L          +  ++       +        ++++ + + +G    L GVP  +AL +
Sbjct: 231 WLRDATGRRAGWHLTELLTRAWNTLGGFIRAQAVVSLIDAIFIGLGLVLIGVPLAMALAI 290

Query: 247 ITAIMAMIPGGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           IT I   IP    I   A++ +  L+      A  +     +   +    L P+L    +
Sbjct: 291 ITFIAGFIPFVGAIVSGALAVVIALVSLGFTQALLVLGLVLLVQQLEGNVLSPWLQAKAM 350

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L  +     ++ G    GL+G F+     A+IAV ++
Sbjct: 351 NLHPVIVLVSVIVGSALFGLIGGFLAVPTAAMIAVAYR 388


>gi|305680242|ref|ZP_07403050.1| putative membrane protein [Corynebacterium matruchotii ATCC 14266]
 gi|305659773|gb|EFM49272.1| putative membrane protein [Corynebacterium matruchotii ATCC 14266]
          Length = 478

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/339 (17%), Positives = 116/339 (34%), Gaps = 20/339 (5%)

Query: 11  IMRWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
            +R++IM      L+     +     PVL A+I+    WP        K       + ++
Sbjct: 85  ALRFIIMVAAGYLLWRGLALVWEGLLPVLLAIIVSTVLWPPVRWLRKHK-----VPSALS 139

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI-PVPRWLSDIPGGMWASELWTK 125
            V V+  F   L  +F      +      +      GI  + +W+   P           
Sbjct: 140 VVIVLITFFAILGGIFTAMAPSITTQSKDLAEQATKGIEQLQQWIQGPP--------LNI 191

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L H   +     TFL+    D   R  S          ++ + M++  FFF +DG    
Sbjct: 192 DLGHYNDIIDQISTFLQNRVTDIASRVVSGI-STAGSIVVTFVLMLVLTFFFLKDGEGFL 250

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +     +    +  ++   +   +        II+  +   +     +  VP   AL 
Sbjct: 251 PMIRRTTGYNVGWHLTEVLTRIWNTLSGFIRVQAIISFVDASCICIGLLILHVPLAPALA 310

Query: 246 VITAIMAMIPGGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           VIT   + IP    +   A++ I  L+   + NA  +         +    L+P L    
Sbjct: 311 VITFFASFIPIVGALVAGALAVIIALVSNGVTNALLVLAIIIAVQQLEGHILQPVLQSKA 370

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           + L        +  G    G++G F+   + A ++V+ +
Sbjct: 371 MNLHAAIVLLSVTIGSTMFGVVGAFLAVPVAATLSVLVR 409


>gi|306835741|ref|ZP_07468745.1| integral membrane protein [Corynebacterium accolens ATCC 49726]
 gi|304568372|gb|EFM43933.1| integral membrane protein [Corynebacterium accolens ATCC 49726]
          Length = 495

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 60/338 (17%), Positives = 121/338 (35%), Gaps = 18/338 (5%)

Query: 11  IMRWMIMFIILVSLY-FLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
            +R +I+ + L ++Y  L  F     PVL ALII     PI     +K    +   A+  
Sbjct: 64  AVRLLIIGVFLFAIYHVLGSFWQGILPVLLALIICTVLNPIARWMRTK-GLPAGLAAITT 122

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +         +  +    M + + L  + V   Q    +  W    P  + + ++ T  
Sbjct: 123 ILISSAAVGGLIASVAPDFMRQSQSLYLQTVSGIQ---QLQLWAQGPPLNLDSDDMSTYI 179

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                 L+  +     +                   + +++  +++  FFF +DG     
Sbjct: 180 DEAAGWLQGRAGVIAGSVFTGI---------GNATSFFITVFIVLVLTFFFLKDGTKFLP 230

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L          +  ++       +        ++++ + + +G    L GVP  +AL +
Sbjct: 231 WLRDATGRRAGWHLTELLTRAWNTLGGFIRAQAVVSLIDAIFIGLGLVLIGVPLAMALAI 290

Query: 247 ITAIMAMIPGGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           IT I   IP    I   A++ +  L+      A  +     +   +    L P+L    +
Sbjct: 291 ITFIAGFIPFVGAIVSGALAVVIALVSLGFTQALLVLGLVLLVQQLEGNVLSPWLQAKAM 350

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L  +     ++ G    GL+G F+     A+IAV ++
Sbjct: 351 NLHPVIVLVSVIVGSALFGLIGGFLAVPTAAMIAVAYR 388


>gi|45358507|ref|NP_988064.1| hypothetical protein MMP0944 [Methanococcus maripaludis S2]
 gi|44921265|emb|CAF30500.1| hypothetical protein MMP0944 [Methanococcus maripaludis S2]
          Length = 336

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 56/337 (16%), Positives = 133/337 (39%), Gaps = 21/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +MR  ++   L  +     F   +  A    + + P +S+              +  +
Sbjct: 7   RFLMRIFVLISFLSVMIIAFPFLDTIAFACAFAYMTEPFFSALKKYTGR------TLGAI 60

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +  VP + L +  + ++ E ++ +  A        ++++ I     A E  +  LS
Sbjct: 61  LCILMITVPAIILVFLILTDIFEFLNSLDYAG-FVDYTVQFINYIGLQNIAKEDLSSILS 119

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +    +           + + A +   + L +   +   +   ++F +DG+     +
Sbjct: 120 EIWNFLKPT-----------VNKMAGQIYGLPLLFIKGL-VTVFLTYYFLKDGYRFKDAV 167

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 ++    +   R + +  ++ F+   + A   GL+  + +W  G+P+ V LG ++
Sbjct: 168 MPHVPEVYHVQTELFIRKLHEAYKNLFVVNALTAFTVGLISIAGFWAIGLPNPVTLGALS 227

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIK 306
            I+ ++P  G    +  +S+Y +  G    A  LF +G + L +  D  +RP LV     
Sbjct: 228 GILTLLPIVGGWTIYMPLSVYYIAVGMYSKAILLFGFGVLFLSLAPDFVIRPRLVNHESS 287

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +         + G   +G+ G  +GP++M     I++
Sbjct: 288 IHPAFALVAFLMGPLALGITGFALGPLIMGTFDAIFR 324


>gi|110637635|ref|YP_677842.1| permease [Cytophaga hutchinsonii ATCC 33406]
 gi|110280316|gb|ABG58502.1| conserved hypothetical protein; possible permease [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 366

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 63/342 (18%), Positives = 142/342 (41%), Gaps = 8/342 (2%)

Query: 6   LNPQGIMRWMIMF-IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
            + +  +R ++ F ++      +  F + +L  +I+   + PI +   ++   S  + AV
Sbjct: 14  NSLETAIRLVLFFGLMFFCYIIMMPFVSILLGGIILAVAASPILTLLRNRFNLSDKWGAV 73

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           + T   + +FIVP   L +  + E    +S    A   G+     L  +P        + 
Sbjct: 74  LITCVALIVFIVPSYLLIHSLIREFTHFISPENRAAVTGM--IENLRGLPLIQDTLYEFL 131

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           K+L++  S+               +  F    G+  + +  S+I   +    F       
Sbjct: 132 KNLTNNSSVVFKEHATQIEAVGIGVLGFIGGLGLGLVHFLASVIIAGL----FLAHAKQS 187

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           +   + +   +     ++ S I  + I++   G+  +A  E ++    +++AGVP     
Sbjct: 188 AGLAEKIFIRIAGKNGEEFSHITERTIQNVTKGIIGVAFLESVLAAFGFFVAGVPLAGVW 247

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            V+  +++++  G       + IY+   G+   A+ L  W  + ++I +  ++P L+   
Sbjct: 248 TVVCLLLSIVQLGIVPLAVPIVIYMFYTGSPVTASLLAAW-MVLIYIFEHLMKPILLSKG 306

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
             +P    F G+VGG    G +G+F+G VL ++   ++   +
Sbjct: 307 APVPMPIIFIGVVGGFIAGGFIGMFLGAVLFSIAYKLFLVWL 348


>gi|46578545|ref|YP_009353.1| hypothetical protein DVU0128 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120603874|ref|YP_968274.1| hypothetical protein Dvul_2836 [Desulfovibrio vulgaris DP4]
 gi|46447956|gb|AAS94612.1| membrane protein, putative [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120564103|gb|ABM29847.1| protein of unknown function UPF0118 [Desulfovibrio vulgaris DP4]
 gi|311232471|gb|ADP85325.1| protein of unknown function UPF0118 [Desulfovibrio vulgaris RCH1]
          Length = 352

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/321 (16%), Positives = 105/321 (32%), Gaps = 10/321 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
            RW+++            F   +  A  +     P+     + +       A + T    
Sbjct: 3   TRWLLLAAFAAGAALFSSFLKALFFAACLACAFRPLSRRLEAWRG--PLVAAGLTTALAG 60

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              ++P+  +      +  + ++ +    +           +   + A       L    
Sbjct: 61  MCLVIPVAVVGSLAAPQAVQGLAVLDGLRESNWFTSPEAQQLVDDIDARLRDLPGLEGGL 120

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                +   +                   L+  L    +++ +F F     + ++ +   
Sbjct: 121 RGLARNAAGILGTAARTALAGGVGLAGGALNAVLQGFIVLMLIFVF----TAYARHIQRF 176

Query: 192 GEHLFPAYWKKISRIVPKV---IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
              L P     + R V      +     G+ ++A  +G++ G  + +AGVP     G I 
Sbjct: 177 ALALLPMPRAMLDRCVTAFRGAVVGVLAGVVLVAAIQGVLCGIGFAVAGVPQAAFWGFIA 236

Query: 249 AIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A++A IP  G    +     +L   G    A  L LW AI +   D  LRP  +   I+ 
Sbjct: 237 AMVAPIPVVGTMAVWIPACAWLWFAGKTTAAIGLVLWSAIIVSGSDNILRPIFLKTGIEA 296

Query: 308 PFLPTFFGLVGGVRTMGLLGL 328
           P    F  ++ G+   G +GL
Sbjct: 297 PIALIFLAIICGLAAFGPMGL 317


>gi|255323344|ref|ZP_05364478.1| acid membrane antigen A [Campylobacter showae RM3277]
 gi|255299636|gb|EET78919.1| acid membrane antigen A [Campylobacter showae RM3277]
          Length = 346

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 65/352 (18%), Positives = 137/352 (38%), Gaps = 23/352 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N +       +  + + +Y  K F   +  A ++   +  +   F+   +   T  A +
Sbjct: 1   MNNRVFFGVFALCALALVVYLFKPFLLNIFIAALLAVATSNVNVKFLQLTKGKRTLSAAL 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T+++  LFI PLL+             +  +    +      +    P           
Sbjct: 61  TTLALFSLFIAPLLYAVIEIAKHAANFNTGYITNTLNYFQSGNFQLPEPIK--------- 111

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
               P+  +++++  +K    + I   A   G   +++ + +IF+++  FF    G  + 
Sbjct: 112 -FLEPKIKEMIADIDVKAISANLIANLAG-IGKSSVNFLVDMIFILVFFFFAVLYGSELV 169

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L S    +  +  + I   V  V+      + I AI +G +        G  +   +G
Sbjct: 170 GYLKSALP-MKESESEFILSEVANVMSVVLYSIVINAILQGCLFAIITISYGY-NGFLMG 227

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPF---- 299
           ++ A  +++P  G  +++  +S+Y    GN   A  + ++  I + +V D  L+P     
Sbjct: 228 ILFAFTSLVPVVGGLLAWGPISLYEFANGNTAAAIVIAVYTIIVISVVADTFLKPIVIKF 287

Query: 300 ----LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
               LV  P K+  L  FF ++ G+ T G  GL +GP ++       K   +
Sbjct: 288 INDKLVKIPTKINELLLFFSMIAGISTFGFWGLILGPAIVTFFISTIKLYTL 339


>gi|289580791|ref|YP_003479257.1| hypothetical protein Nmag_1111 [Natrialba magadii ATCC 43099]
 gi|289530344|gb|ADD04695.1| protein of unknown function UPF0118 [Natrialba magadii ATCC 43099]
          Length = 381

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 65/321 (20%), Positives = 135/321 (42%), Gaps = 11/321 (3%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
            ++   +      VL A ++ F  +P +     +     +  A++ TV  +   IVPL+ 
Sbjct: 17  AIATLMVAPLLQYVLGAALLAFILYPTHERLEPRLGTRPS--ALLLTVVAIVGAIVPLML 74

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           +    +  +   V     A+   +   R ++    G+   ++ +   +  Q L+  +   
Sbjct: 75  VSLIVLDTVVSFVVGFDAAST--VDEIRTIAHDDFGIDTEQIQSLETAVIQELENSAAGA 132

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           L+    + +           ++  + ++  I  L++   DG      L  +   L     
Sbjct: 133 LELALFELVG-----LLNRGMEMGIGLLVFIFLLYYLLVDGDLFVAWLREVVP-LKDHIR 186

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +++   +  V  +      ++A+ EGL+ G  ++L GVP+     VI  I++ +P  G  
Sbjct: 187 EELFTEINVVTWAVIKSHVLVAVIEGLLGGLGFYLLGVPNVAFWTVIMIIVSFLPAIGVW 246

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +     YLL+      A  + L+G   L +VD  LR ++V     L       G++GG
Sbjct: 247 LVWGPAVGYLLMTAGPVGAVAMLLYGITVLSLVDNYLRAYVVDRGSGLHPAVVIVGVIGG 306

Query: 320 VRTMGLLGLFIGPVLMALIAV 340
           +  +G++GLF+GPVL+A+   
Sbjct: 307 IYLLGIMGLFLGPVLLAVFKA 327


>gi|294496066|ref|YP_003542559.1| hypothetical protein Mmah_1416 [Methanohalophilus mahii DSM 5219]
 gi|292667065|gb|ADE36914.1| protein of unknown function UPF0118 [Methanohalophilus mahii DSM
           5219]
          Length = 340

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 62/327 (18%), Positives = 127/327 (38%), Gaps = 19/327 (5%)

Query: 25  YFLKGFFAPVLSAL-IIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           Y L  +      A  II   + P++S    K +      +++     +   I+PL ++  
Sbjct: 28  YALYPYIGAFF-AAVIIYVITNPVHSYITKKLKLDMRITSIMIIFLSLVTIIIPLYYIII 86

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             + + K+L++               ++ +   +    +       P     L    L  
Sbjct: 87  LLLEQAKQLMN---------------IARLNWDILEENIQIIDEIAPALNIELKMAELVH 131

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
              +FI  F         +  + +  M+  L++         +++              +
Sbjct: 132 IIEEFITGFIFGTIQNLGNQLIGLAIMVFLLYYLLSTDNKKLEEMALNILPFSTENKLHL 191

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISF 262
              +  +  ST LG+  IA+ +G VL   + L G+   +  G IT I+++IP  G P+ +
Sbjct: 192 LNEMRNITYSTILGILFIALFQGGVLTITFLLLGIEGALLWGFITLILSIIPFIGPPLVW 251

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++Y +I+G+    T +F+ G   +   D  LRP++      +  L +  GL  G+  
Sbjct: 252 GPATVYKIIEGDFIAGTIIFVAGMF-ISNFDYVLRPYIQEKFAAIHPLISLLGLFIGIYL 310

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAI 349
            G +GL +GPVL++   ++ K      
Sbjct: 311 FGAIGLVVGPVLLSCFILMLKMFNQEY 337


>gi|242399644|ref|YP_002995069.1| Predicted permease [Thermococcus sibiricus MM 739]
 gi|242266038|gb|ACS90720.1| Predicted permease [Thermococcus sibiricus MM 739]
          Length = 328

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 56/347 (16%), Positives = 142/347 (40%), Gaps = 31/347 (8%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST-FLA 63
           M   + +   + + I  ++   +    + +  A I+ +   P++    ++ +   +  + 
Sbjct: 1   MKAEEIVWGTVTLIIAYLAWKTIAPLLSAIFFAAILAYAVLPLHKRLTTRIDNKKSALIL 60

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +  + +  +F V L+ +    +    E +   +                         W
Sbjct: 61  TLLLIGLSSIFTVELVLIIKNLIASFYEDIMNFI------------------------YW 96

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
           +  +  P  +  + +  L +     +  +   +      Y L ++  +   + F  +   
Sbjct: 97  SLTIELPFGIHDVLQK-LYSQSTPKLAEYVQSYAFSIPKYLLQLVIFLAMFYTFLVNSDR 155

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV---PS 240
           I +Q+  L         +K+ +     +++      ++ I +G ++   +W  G+   P+
Sbjct: 156 IKKQIYLLIPRGHEDLGEKLLKRADVTLQALIRAWLLLNIAKGALMTLGFWGFGITDIPT 215

Query: 241 HVALGVITAIMAMIPGG-APISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRP 298
            +  G++T + + IP     + +   +I+LL +G++  A  + ++GA+ +  + D T+RP
Sbjct: 216 ALLAGLLTMLFSFIPLFEGWMIWVVAAIFLLKQGDVLKAIAISIYGAVLVSPLPDFTIRP 275

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            LV    KL  +    G++GGV   G+ GL IGP+++ L++ + KE 
Sbjct: 276 KLVAKEAKLDEIMVLIGMIGGVWAFGVKGLIIGPIILNLVSALLKEW 322


>gi|150398999|ref|YP_001322766.1| hypothetical protein Mevan_0245 [Methanococcus vannielii SB]
 gi|150011702|gb|ABR54154.1| protein of unknown function UPF0118 [Methanococcus vannielii SB]
          Length = 336

 Score =  119 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 49/337 (14%), Positives = 125/337 (37%), Gaps = 21/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + IMR  +    L  ++    F   +  A    + S P Y +              +  +
Sbjct: 7   RFIMRIFVFITFLAVIFTAWPFLDTLAFACAFSYMSKPFYDAIRKFTGR------TLGAL 60

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +  +P +FL  + + ++   ++ +         V  +L+ +     A +  T  +S
Sbjct: 61  ICILIITIPAIFLLLFIISDVINFLNTLNFLEIIEN-VTNFLTYLGLQNIAKKDLTPVIS 119

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                   +   + +                     + I+  +   ++F +DG +    +
Sbjct: 120 ELWIFLRPTINMMASQL------------YRLPLLFIKILITVFLTYYFLKDGHNFKGAI 167

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 ++    +     + +  ++ F+G  + +   G++    +W  G+P+ V LG ++
Sbjct: 168 MPHVPDVYAPQTELFMENLHEAYKNLFVGNALTSFTVGIISIIGFWAMGLPNPVTLGALS 227

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIK 306
            I+ ++P  G    +  + ++ +  G    A  LF +G + L +  D  +RP +V     
Sbjct: 228 GILTLLPVVGGWTIYMPLCLFYIATGMYLKALLLFGFGVLFLSLAPDFVIRPSIVSNESD 287

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +         + G   +G+ G  +GP+++     I++
Sbjct: 288 IHPALLLIAFLMGPLALGITGFALGPIIVGTFDAIFR 324


>gi|116328176|ref|YP_797896.1| permease [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116330900|ref|YP_800618.1| permease [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|116120920|gb|ABJ78963.1| Permease [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116124589|gb|ABJ75860.1| Permease [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 375

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 60/350 (17%), Positives = 140/350 (40%), Gaps = 11/350 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIATVSV 70
              + +F I +     + +    L ALI+   +   +        E     +  I    V
Sbjct: 19  FSVLFVFTIGIFFLVFRPYLYSSLMALILYLATRRPHKLLKEYLGEKFQWLVPWIMISLV 78

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             + +VP  F+    + E   ++ K+ ++      +   ++      + ++     +  P
Sbjct: 79  SMIVLVPSYFVIRTLIGETLSILFKLRISLSEDKIIETLMNFAMLTDFITDNEFFWVKVP 138

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLD-------YCLSIIFMIIALFFFYRDGFS 183
           +     +E ++    +D I    S      L          +++ F ++ LFF Y+DG  
Sbjct: 139 EIYGEFAENYVDILNLDSIYGILSNASSFILGNIELPTGILMNLFFALLVLFFLYQDGKK 198

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + + +            +++ R V   +++   G  II+I +G  +     +AG+ S   
Sbjct: 199 VERFILDNLP-FSKQLEEQVGRKVASAVQTVIRGNLIISILQGAAVYILLLVAGISSPFL 257

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
              + +  ++IP  G  + +  + +Y L ++ N   A             ++  ++P ++
Sbjct: 258 YASLASFFSIIPVVGTSVVWLPIGLYILFLENNPMMAFFFMGSALFFYLALENFIKPRML 317

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
              ++   L  F  L+GG++  G++GL +GPV++ L+ ++W    +  KE
Sbjct: 318 DKKLQAHPLLIFLSLIGGIKEFGIMGLVLGPVVVTLVVILWDFWKLYRKE 367


>gi|300858162|ref|YP_003783145.1| hypothetical protein cpfrc_00744 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685616|gb|ADK28538.1| putative membrane protein [Corynebacterium pseudotuberculosis
           FRC41]
 gi|302205884|gb|ADL10226.1| Putative membrane protein [Corynebacterium pseudotuberculosis C231]
 gi|302330441|gb|ADL20635.1| putative membrane protein [Corynebacterium pseudotuberculosis 1002]
 gi|308276119|gb|ADO26018.1| putative membrane protein [Corynebacterium pseudotuberculosis I19]
          Length = 524

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 62/337 (18%), Positives = 123/337 (36%), Gaps = 18/337 (5%)

Query: 12  MRWMIMFII-LVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +R +I+        Y +K F     PV+ ALI+    W   +    K+   S   A+++ 
Sbjct: 114 IRILIIAATGFAGWYLIKQFWRGLLPVVLALIVCTVLWAPTAWM-RKRGVPSGLAALVSI 172

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++    F   +  +      + + L  +     Q    V  WL   P  + + EL  +  
Sbjct: 173 LASFGFFGGLIWVISPDIARQSQTLYFQAFEGVQK---VQLWLQGPPFNLDSDELGNRVN 229

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +  Q  +  S T                   I     ++I  +++  FFF +DG      
Sbjct: 230 TAVQWFQRQSGTIAGEIFSGI---------GIATSVLVTIGVVLVLTFFFLKDGEGFLPW 280

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L S+       +  ++       +        ++++ + + +G+   L GVP  +AL V+
Sbjct: 281 LRSIVGKRAGWHLTELLTRSWITLGGFVRAQALVSLVDAIFIGAGLILLGVPMALALAVL 340

Query: 248 TAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T I   IP        A+++ + L+   +  A            +    L P L    + 
Sbjct: 341 TFIAGFIPIIGAFVAGALAVLVALVSLGLTKAIITLGIVIAVQQLEGNVLSPLLQSRAMN 400

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L  +     +  G    G++G F+     A+IAV+++
Sbjct: 401 LHPVIVLVSVTVGGGIFGIMGAFLAVPAAAMIAVLFR 437


>gi|94986915|ref|YP_594848.1| permease [Lawsonia intracellularis PHE/MN1-00]
 gi|94731164|emb|CAJ54526.1| predicted permease [Lawsonia intracellularis PHE/MN1-00]
          Length = 346

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 66/352 (18%), Positives = 131/352 (37%), Gaps = 26/352 (7%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI----- 65
           + R + +  I      L  F      A  +   S+P +     K   S  +  VI     
Sbjct: 1   MTRILSLLSIGAWFLLLWPFPVTTFLATSMACVSYPYFLKLTQKI--SRYWAIVIYTICL 58

Query: 66  -----ATVSVMCLFIVPLLFLFYYGMLEMKEL-VSKVVLANQHGIPVPRWLSDIPGGMWA 119
                  + +    IVP        + +++E    + + A+Q    + RWL +IPG    
Sbjct: 59  SLLILLPLIITISLIVPQAVAGLKILDQLREPGFLQSINADQMLDSIDRWLKEIPGLEGG 118

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            +     ++            +  +    +               L+I   I+       
Sbjct: 119 VKQLASSIAG-----------IVGSVTRSVLAGGLGIAGGAFHAVLTIFIFIMVTVLCIT 167

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           +   +   +  +  +       +    +   I    +G+ +++I +G + G  + +A VP
Sbjct: 168 NAELLYTMI-RITSNFSYEVLNRFIVTIRNAIFGVLVGIVLVSIIQGFLCGIGFAVANVP 226

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
                G+ITA +A IP  G  + +  V I+L ++G       + +W  I +  VD  LRP
Sbjct: 227 QPAFWGLITAFVAPIPFVGTSLVWIPVCIWLWLQGETVAMVAMIIWCVIVVAGVDNLLRP 286

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           F +   I    +     ++ G+   G +G+  GP+L+A+     KES+ A++
Sbjct: 287 FFLKTGIDATLIALILSILCGLAAFGPVGIVAGPILVAIAIQASKESLQALQ 338


>gi|255324406|ref|ZP_05365523.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
           SK141]
 gi|255298312|gb|EET77612.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
           SK141]
          Length = 489

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 63/338 (18%), Positives = 119/338 (35%), Gaps = 18/338 (5%)

Query: 11  IMRWMIMFIILVSLYFLKG-F---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
            +R +I+ + L +LY L G F     PVL ALII     P+           +   A + 
Sbjct: 58  AVRLLIICVFLYALYRLLGNFWQGLLPVLLALIICTVLAPVAKKL-RNIGLPAALAAAVT 116

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +         + F+    M + + L  + V   Q    +  W    P            
Sbjct: 117 ILVSFTAVGGLIAFVAPDFMRQSRSLYLQTVSGIQS---LQLWAQGPP--------LNLD 165

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                S    + ++L+           +  G       +++  +++  FFF +DG     
Sbjct: 166 SDDMSSYIDEAASWLQQRAGAIAGSVFTGIGTAT-SILVTLFIVLVLTFFFLKDGAKFLP 224

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L          +  ++       +        I+++ + + +G    L GVP  +AL +
Sbjct: 225 WLRDATGKRAGWHLTELLTRAWATLGGFIRAQAIVSLVDAVFIGVGLALIGVPLAMALAI 284

Query: 247 ITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           IT I   IP    I   A+S+ + L+   +  A  +     +   +    L P+L    +
Sbjct: 285 ITFIAGFIPFVGAIVAGALSVTIALVSLGVTKALLVLGLVLLVQQLEGNVLSPWLQSKAM 344

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L  +     +  G    GL+G F+     A+ AV ++
Sbjct: 345 DLHPVIVLVSVTVGSALFGLIGGFLAVPAAAMFAVAYR 382


>gi|311740740|ref|ZP_07714567.1| integral membrane protein [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311304260|gb|EFQ80336.1| integral membrane protein [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 489

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 62/338 (18%), Positives = 119/338 (35%), Gaps = 18/338 (5%)

Query: 11  IMRWMIMFIILVSLYFLKG-F---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
            +R +I+ + L +LY L G F     PVL ALII     P+           +   A + 
Sbjct: 58  AVRLLIICVFLYALYRLLGNFWQGLLPVLLALIICTVLAPVAKKLRD-IGLPAALAAAVT 116

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +         + F+    + + + L  + V   Q    +  W    P            
Sbjct: 117 ILVSFTAVGGLIAFIAPDFVRQSRSLYLQTVSGIQS---LQLWAQGPP--------LNLD 165

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                S    + ++L+           +  G       +++  +++  FFF +DG     
Sbjct: 166 SDDMSSYIDEAASWLQQRAGAIAGSVFTGIGTAT-SILVTLFIVLVLTFFFLKDGAKFLP 224

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L          +  ++       +        I+++ + + +G    L GVP  +AL +
Sbjct: 225 WLRDATGKRAGWHLTELLTRAWATLGGFIRAQAIVSLVDAVFIGVGLALIGVPLAMALAI 284

Query: 247 ITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           IT I   IP    I   A+S+ + L+   +  A  +     +   +    L P+L    +
Sbjct: 285 ITFIAGFIPFVGAIVAGALSVTIALVSLGVTKALLVLGLVLLVQQLEGNVLSPWLQSKAM 344

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L  +     +  G    GL+G F+     A+ AV ++
Sbjct: 345 DLHPVIVLVSVTVGSALFGLIGGFLAVPAAAMFAVAYR 382


>gi|183221243|ref|YP_001839239.1| putative signal peptide [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189911334|ref|YP_001962889.1| permease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167776010|gb|ABZ94311.1| Permease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779665|gb|ABZ97963.1| Conserved hypothetical protein; putative membrane protein; putative
           signal peptide [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 369

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 64/359 (17%), Positives = 132/359 (36%), Gaps = 15/359 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-- 58
           M       + I+  ++  I L + + L   F P L A  +    +        + +    
Sbjct: 1   MNWITNKNETIVYILLAGIFLATCFTLFFVFKPFLWASFLALLFYLTTRKIHKRLKNVLG 60

Query: 59  ---STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
                    I  + ++    +P   +    + E   LVS V         V   L+    
Sbjct: 61  VKFHGLSPYIMVILMLACVFIPSYLIVSTLIRESLNLVSYVRNQLTEESIVALLLNSPIL 120

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD-------YCLSII 168
             + +E     +  P   +      +    +D I           L           +  
Sbjct: 121 TDFFTENEFFWIKLPIMYREYVGQHMDILNLDSIYSLLKNSSGFLLGSFEVPGAIIFNGF 180

Query: 169 FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLV 228
           F  I LFF Y++G  +   L  L         +++ R + + IR+  +G   I++ +G +
Sbjct: 181 FTFILLFFLYKEGSRMEHGLFLLLP-FPTEIEERLGRRIEEAIRTVMMGNMFISLLQGAL 239

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYL-LIKGNIFNATCLFLWGA 286
           +        V +   L  I  I ++IP  G  + +  + +Y+ L++ N   +    + GA
Sbjct: 240 VYFLLLFTSVSNKFLLSSIATIFSLIPVVGTSVVWFPIGLYMGLVQENWTGSVLFMIAGA 299

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
               I++  ++P ++   +K      F  L+GG++  G+ G+ IGP+ + L+ ++W   
Sbjct: 300 ASYLILENFVKPKILDKKLKTHPFLIFLSLIGGLQEFGVAGIIIGPMALTLVIILWDFW 358


>gi|21228773|ref|NP_634695.1| hypothetical protein MM_2671 [Methanosarcina mazei Go1]
 gi|20907289|gb|AAM32367.1| hypothetical protein MM_2671 [Methanosarcina mazei Go1]
          Length = 401

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 68/340 (20%), Positives = 141/340 (41%), Gaps = 16/340 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +++ + L +LY    FF  ++ + +  +   P+YS F  K  ++    A+I   
Sbjct: 8   KAIYAVVLIMVSLFALYITSSFFYVIILSALFAYVIHPVYS-FCLKFVKNRQICALIPLG 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +V  L       +    M E   ++      N       R +  +   +          +
Sbjct: 67  TVFILIASSGFMMIKALMNETSRILEIPNTLNGFANMDLRRIVGLFEPIIK--------T 118

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY---CLSIIFMIIALFFFYRDGFSIS 185
           HP  L      +L T  +D++P+  +    I  D     + +I +++  ++   +  +I+
Sbjct: 119 HPGKLTESIGGYLNTLVMDYVPQIQNNIVQISTDLSILIIELIVIVVLTYYLLVESETIA 178

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            +L  L             R +  + ++ F+   +  +  G++ G  YW+ GVP  +  G
Sbjct: 179 AELPGLFPD--RKVGVVFLRELNHIYQNLFVVYFLTCLATGVIGGILYWVLGVPYPLIWG 236

Query: 246 VITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGG 303
           ++T IMA++P  GA   +  +++Y ++  N F A  L   G + L I+ D  +RP L   
Sbjct: 237 IVTFIMALLPVVGAGTVYGLLALYYVLIQNYFTAGALVFLGIVFLNIIPDFVIRPKLARS 296

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              +    T       V  +G +G+ IGP+    +  +++
Sbjct: 297 RAAIHPAITLLAFAAPVFVLGPVGIIIGPLTYGFLLAVFR 336


>gi|315638162|ref|ZP_07893344.1| acid membrane antigen A family protein [Campylobacter upsaliensis
           JV21]
 gi|315481698|gb|EFU72320.1| acid membrane antigen A family protein [Campylobacter upsaliensis
           JV21]
          Length = 347

 Score =  116 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 68/351 (19%), Positives = 138/351 (39%), Gaps = 23/351 (6%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M + +  +   I+ I+ + LY  K F   +  A ++   +  +++ F+S  ++     + 
Sbjct: 1   MKSGKIFLICFILVILSLLLYLFKSFLLVMAIAALMAVATSNLHAKFLSLTKQRKLLAST 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           + T  ++ LF  P ++        +K     + L  Q    +  +   +P  +   E   
Sbjct: 61  LTTSFMILLFFAPFIYTSIELAKALKNF--DINLITQTLDYIKHYEFSLPSSLEFLEPKI 118

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           K       L  L    L          +AS F      + + +  + +  FF    G  +
Sbjct: 119 KEFIAELDLNSLYRQAL---------TYASSFTKSGAKFLMDMALICVFYFFANLYGTEL 169

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              L S+   +      +I   V  V+      M I+AI +G + G   +  G    + +
Sbjct: 170 VIYLKSIVP-INKTELDEILGEVGNVMAVVLYSMIIVAIFQGALFGIIMFFYGYDG-LLM 227

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPF--- 299
           GVI A+ ++IP  G  + +  VS+Y    GN+ +A  + ++  I + F+ D  ++P    
Sbjct: 228 GVIFAVSSLIPAVGGALVYVPVSLYTFASGNLSSAIVILIYSFIMISFVADTLIKPLIIK 287

Query: 300 -----LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
                LV  P  +  L  F  ++ G+ + G  G+ +GP ++       +  
Sbjct: 288 WINEKLVKTPTNINELLIFLAMIAGISSFGFWGIILGPAILTFFISTLRLY 338


>gi|300812733|ref|ZP_07093140.1| putative membrane protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496273|gb|EFK31388.1| putative membrane protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 393

 Score =  116 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 58/336 (17%), Positives = 117/336 (34%), Gaps = 6/336 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+     P+L A++  +   P+      K +   T   ++    V    I  +  L    
Sbjct: 48  FISAILPPLLVAMVQYYLMEPVVDKLEEKFKVPRTVTIMVIFAIVTVFLIWAINSLIPVV 107

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++  LV       ++       + ++      S L         SL+      + +  
Sbjct: 108 QSQIDSLVKNWPTIWKNST---NAVDELLHSPKFSGLRDSLQKQMTSLQKNFSKSMGSTV 164

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              +    S   +    +  ++      LFF  +DG  +   L       +     K+  
Sbjct: 165 SSALGNLTSAVTVATAVFT-TLATAPFLLFFMLKDGHKLRPFLVKFAPQRWEQATSKLLH 223

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTA 264
            V + + S  +G   +AI  G++    Y + G P   AL +    + +IP  G  I    
Sbjct: 224 EVNQAVSSYVIGQVSVAICVGIMFFIGYTIIGEPYGAALAICAGFLNLIPYFGTFIGLIP 283

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             I  L+      A  L ++  IE  I  + + P +VG  +K+  + T   ++G     G
Sbjct: 284 ALIIALVTNLPMVAKVLVVF-FIEQIIETRVISPLVVGNRLKMHPVTTIIVMLGAGSVWG 342

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           L G+  G  + A++ ++        ++       +F
Sbjct: 343 LWGVIGGIPIYAVMKILLTHVYRYYRKVSHLYDDSF 378


>gi|325684459|gb|EGD26623.1| permease [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 396

 Score =  116 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 118/336 (35%), Gaps = 6/336 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+     P+L A++  +   P+      K +   T   ++    V    I  +  L    
Sbjct: 48  FISAILPPLLVAMVQYYLMEPVVDKLEEKFKVPRTVTIMVIFAIVTVFLIWAINSLIPVV 107

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++  LV       ++       + ++      S L         SL+      + +  
Sbjct: 108 QSQIDSLVKNWPTIWKNST---NAVDELLHSPKFSGLRDSLQKQMTSLQKNFSKSMGSTV 164

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              +    S   +    +  ++      LFF  +DG  +   L       +     K+  
Sbjct: 165 SSALGNLTSAVTVATAVFT-TLATAPFLLFFMLKDGHKLRPFLVKFAPQRWEQATSKLLH 223

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTA 264
            V + + S  +G   +AI  G++L   Y + G P   AL + +  + +IP  G  I    
Sbjct: 224 EVNQAVSSYVIGQVSVAICVGIMLFIGYTIIGEPYGAALAICSGFLNLIPYFGTFIGLIP 283

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             I  L+      A  L ++  IE  I  + + P +VG  +K+    T   ++G     G
Sbjct: 284 ALIIALVTDLSMVAKVLVVF-FIEQIIETRVISPLVVGNRLKMHPATTIIVMLGAGSVWG 342

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           L G+  G  + A++ ++        ++       +F
Sbjct: 343 LWGVIGGIPIYAVMKILLTHVYRYYRKVSHLYDDSF 378


>gi|57242122|ref|ZP_00370062.1| acid membrane antigen A Cj1363 [Campylobacter upsaliensis RM3195]
 gi|57017314|gb|EAL54095.1| acid membrane antigen A Cj1363 [Campylobacter upsaliensis RM3195]
          Length = 347

 Score =  116 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 139/349 (39%), Gaps = 23/349 (6%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M + +  +   I+ I+ + LY  K F   +  A ++   +  +++ F+S  ++     + 
Sbjct: 1   MKSGKIFLICFILVILSLLLYLFKSFLLVMAIAALMAVATSNLHAKFLSLTKQRKLLAST 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           + T  ++ LF  P ++        +K     + L  Q    +  +   +P  +   E   
Sbjct: 61  LTTSFMILLFFAPFIYTSIELAKALKNF--DINLITQTLDYIKHYEFSLPSSLEFLEPKI 118

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           K       L  L    L          +AS F      + + +  + +  FF    G  +
Sbjct: 119 KEFIAGLDLNSLYRQAL---------TYASSFTKSGAKFLMDMALICVFYFFANLYGTEL 169

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              L S+   +      +I   V  V+      M I+AI +G + G   +  G    + +
Sbjct: 170 VIYLKSIVP-INKTELDEILGEVGNVMAVVLYSMIIVAIFQGALFGIIMFFYGYDG-LLM 227

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPF--- 299
           GVI A+ ++IP  G  + +  VS+Y    GN+ +A  +F++  I + FI D  ++P    
Sbjct: 228 GVIFAVSSLIPAVGGALVYVPVSLYTFASGNLGSAIVIFIYSFIMISFIADTLIKPLIIK 287

Query: 300 -----LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                LV  P  +  L  F  ++ G+ + G  G+ +GP ++       +
Sbjct: 288 WINEKLVKTPTNINELLIFLAMIAGISSFGFWGIILGPAILTFFISTIR 336


>gi|212223162|ref|YP_002306398.1| hypothetical membrane protein, conserved, DUF20 family
           [Thermococcus onnurineus NA1]
 gi|212008119|gb|ACJ15501.1| hypothetical membrane protein, conserved, DUF20 family
           [Thermococcus onnurineus NA1]
          Length = 348

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 59/338 (17%), Positives = 127/338 (37%), Gaps = 35/338 (10%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           ++ II ++   +     P+   L++ +  +PI+   I +  E+ +  A + TV ++ L  
Sbjct: 12  VLVIIYIAWEVVSPLITPIFFGLVLAYAVYPIHKRLIPELGEARS--AFLLTVGMVGLGG 69

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
                L              VV      +  P                         L  
Sbjct: 70  TITAELIMISAQVAASFYYNVVDFFNWILAQP-------------------------LPS 104

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLD---YCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
               F++    +FIP+ +            Y L +   +   ++   +  SI +Q+    
Sbjct: 105 EVLDFIRNFSGEFIPKLSEYLSKQAFSLPMYPLQLFIFLFTFYYALANSTSIIEQIQLSL 164

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP---SHVALGVITA 249
                   ++I + V K + +      ++ + +G+++   + +  V    + +  G +T 
Sbjct: 165 PEKNRHLGEEILQSVSKTLGALVRAWLLLNVAKGVLMTFGFIIFDVSDIYTAIVAGFLTF 224

Query: 250 IMAMIPGG-APISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLVGGPIKL 307
           + + +P     + +   + Y   +G   +A  + L+G   +  + D  +RP +V     L
Sbjct: 225 LFSFVPLFEGWMIWLIAAAYFAKEGMYLHAAGISLYGFFLVSPMPDYIIRPLIVAKDTDL 284

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
                F G+VGG   MG+ GL IGP+++ L+  + KE 
Sbjct: 285 NETLVFIGMVGGTWAMGIKGLIIGPIVLNLLLTLLKEW 322


>gi|255534118|ref|YP_003094490.1| hypothetical protein Phep_4237 [Pedobacter heparinus DSM 2366]
 gi|255347102|gb|ACU06428.1| protein of unknown function UPF0118 [Pedobacter heparinus DSM 2366]
          Length = 350

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 129/343 (37%), Gaps = 20/343 (5%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T      I   +I+ +  +  Y L+G F  +LS L++     P +   +  K  +  F A
Sbjct: 5   TYKQRNNINLVIIIALGCLIAYSLQGIFGSILSTLVLFTILRPAFIYMVDVKGYNKNFSA 64

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++  V  + + I+P   L    + ++ EL +  +        +      IP G     L 
Sbjct: 65  LLLLVVSVVVIILPFYTLSAMVINKIAELQNDPIYFKNLLFKLKHL---IPVGDDVQRLI 121

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            + L                    +             +  L ++ M   L+F   D   
Sbjct: 122 EEGL---------------KKAGTWATELFPSLISGAFNIVLGLLLMYFLLYFMLVDRER 166

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
               L            ++ +  +     +  LG   IA+ +G +L   +++ G    V 
Sbjct: 167 FENALIKYAP-FRAQNAQRFAEEMRNTTYANVLGQGFIAMVQGSLLSLCFFVLGYTDPVF 225

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            GVIT  ++ +P  G P+ F   ++  +  GN F    + ++G + +  +D  LR  +  
Sbjct: 226 WGVITTFISFVPLLGPPVIFVPAALIQIANGNNFAGWAMLIFGFVVIINIDNVLRFMIAK 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
               +  + T  G+V GV   G+LGL  GP+L++   ++ K  
Sbjct: 286 KVGNIHPIITVIGVVIGVPLFGILGLVFGPLLLSYFILLIKIY 328


>gi|222824271|ref|YP_002575845.1| acid membrane antigen A [Campylobacter lari RM2100]
 gi|222539492|gb|ACM64593.1| acid membrane antigen A [Campylobacter lari RM2100]
          Length = 347

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 58/353 (16%), Positives = 132/353 (37%), Gaps = 23/353 (6%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M +    +   I+FI+   L+  K F   +  A ++  ++  +   F+S  +      A 
Sbjct: 1   MKSSNFFLISFILFILFWVLFLFKPFLMNIAIASLMAVSTSNVNVKFLSIFKGKKVIAAA 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
             T  ++ LF +P ++               +   +        +   +P  +   E   
Sbjct: 61  ATTTFMLALFFIPFVYAIIELAKAASGF--NISYIHNTIEYFKNYSLHLPESLSFIEPKI 118

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           K       L  +S+  L          + S        +   ++ + +  FF    G  +
Sbjct: 119 KEALASIDLNSISKDVL---------TYLSSATKFGTKFLTDMVLICVFYFFANLYGAQL 169

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              + ++   +     + I   V  V+   F  M + AI +G++        G    + +
Sbjct: 170 IGYIKTIVP-MKKEETQGILSEVSNVMSVVFYSMVLNAILQGVLFAIITKFYGYD-AILM 227

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLVG 302
           G++    ++IP  G  + +  VS+Y     N+  A  +F++  + + FI D  ++P+++ 
Sbjct: 228 GILFCFSSLIPVVGGALIYVPVSLYEFANNNLSGALVIFIYSVVMISFIADTLVKPYIIK 287

Query: 303 --------GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
                    P ++  L  FF ++ G+ + G  G+ +GP ++       K  ++
Sbjct: 288 WINEKLVQIPTQINELLIFFAMIAGISSFGFWGIILGPAILTFFISTLKLYVI 340


>gi|297206302|ref|ZP_06923697.1| permease [Lactobacillus jensenii JV-V16]
 gi|297149428|gb|EFH29726.1| permease [Lactobacillus jensenii JV-V16]
          Length = 401

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 68/336 (20%), Positives = 127/336 (37%), Gaps = 6/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI+  +  F      P++ AL+  +   PI   F  K +   T   ++  + V+   I
Sbjct: 42  ISFILNPAWVFFCAILPPLILALVQYYMMNPIVDFFEQKLKVPRTVTILVLFLLVLGALI 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +  L      ++  L+          +   + L   P            +   +    
Sbjct: 102 WVINSLLPIIQGQVDALIKNWPNIWDTSVKTTQNLLHDPHLKGFKSNINSVIDSVEKTLF 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S     T  +  I    S   MIF    ++++     LF+  +DG  ++  L       
Sbjct: 162 KSWQKTGTAALTNISSAVSVITMIF----MTLLTAPFVLFYMLKDGHQLNGYLTKFAPRR 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +   + ++   + + I +   G   +A+  G++    Y + G+P   AL V+ A M +IP
Sbjct: 218 WQDSFSRLLHDINEAISAYIRGQITVAVWVGIIYAIGYNIIGLPYGSALAVLAAFMLLIP 277

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G  I+   V I   I  +      + +  AIE  I  + + P +VG  +K+  + T  
Sbjct: 278 YFGTFIALIPVLIIASIT-SWGMLINVLIVFAIEQTIETRFISPIVVGNKMKMHPITTIL 336

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            L+G     GL G+  G  + A++ +I   S    K
Sbjct: 337 LLIGASAVWGLWGVIFGIPIYAVVKIIVSRSFNYFK 372


>gi|28974220|gb|AAO64221.1| putative acid membrane antigen A [Campylobacter fetus]
          Length = 367

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/334 (15%), Positives = 123/334 (36%), Gaps = 23/334 (6%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           L+  + +   +   +++   +  I ++F+      +   A I T+ +  +F +PL++   
Sbjct: 35  LFLFQSYLLTISIGVLLAVATSNIQNAFLRFTNGKAALSAAITTLFLCTVFFLPLIYAVI 94

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             +         +   +     +  +   +P  +   E   K L     L  L    L  
Sbjct: 95  EIVKNAANF--DIKSISHTIDYIKNFDLKLPQALSFLEPKIKELIAGIDLPTLIRKVL-- 150

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
                   +A        ++ + I F+++ LFF +         +  +   +     + I
Sbjct: 151 -------SYAKGSLEKSANFLIDISFIMLFLFFSHFYANFFKSYIKKVSP-IAKYELEAI 202

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISF 262
              V   +   F       I +G +        G    +  GV+ A  ++IP  G  + +
Sbjct: 203 FSEVANTMSVVFYSTIANMILQGFLFAIIASFYGFDG-LLFGVLFAFSSLIPVVGGALVY 261

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPF--------LVGGPIKLPFLPTF 313
             +S++    G+   A  + ++  + +  + D  ++P         L+  P K+  L  F
Sbjct: 262 IPLSVFEFSLGDTKAAIIILVYSIVVISTLADNFVKPLVIKFINEKLLKTPAKMNELLIF 321

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           F ++ G+ + G  G+ +GP ++ L++   +   M
Sbjct: 322 FSMLAGLSSFGFWGIVLGPAIVTLLSATLRVYAM 355


>gi|260102475|ref|ZP_05752712.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|260083712|gb|EEW67832.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
          Length = 399

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 59/340 (17%), Positives = 123/340 (36%), Gaps = 6/340 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F++  +  F      P+L A+I  +   P+   F  K +       ++  + V+   I
Sbjct: 42  ISFVLNPAWVFFSAILPPLLLAVIQYYVMNPVVDWFEKKFKVPRVVTILVLFLFVLIALI 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +  L      ++  L+          +   +     P            + + Q    
Sbjct: 102 WIINILVPIAQNQINSLIKNWPNIWNDAVNATQEALRDPRLHEVKGSLQNMIDNTQKTLF 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S        I  I    S   MI     ++++     LFF  +DG  +   +       
Sbjct: 162 KSGQSTINATIGNISSAVSIITMI----VMTLLTAPFILFFMLKDGHQLRPYITKFAPEH 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           + + + ++   +   + S   G   +A   G++    Y + G+P  +AL ++   M +IP
Sbjct: 218 WQSSFSQLLYDINYALASYIRGQITVAFWVGVMFVVGYMIIGLPYGLALAILAGFMNLIP 277

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G P++   V +  ++         + +   IE  I  + L P ++G  +++  + T  
Sbjct: 278 YFGTPLALIPVFVIAIMTSG-SMVIKVLVVFLIEQAIETRILSPLVMGNKMEMHPVTTIL 336

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            L+G     GL G+F G  + A++ +I        +   E
Sbjct: 337 LLIGASSVWGLWGVFFGIPIYAILKIIVSRVYNYYRRESE 376


>gi|312891170|ref|ZP_07750692.1| protein of unknown function UPF0118 [Mucilaginibacter paludis DSM
           18603]
 gi|311296337|gb|EFQ73484.1| protein of unknown function UPF0118 [Mucilaginibacter paludis DSM
           18603]
          Length = 350

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 61/323 (18%), Positives = 123/323 (38%), Gaps = 18/323 (5%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           +Y L+G  + +L A+++     P+Y   + KK  +   +A++  +  + + ++P L L  
Sbjct: 25  VYALRGLSSSILGAIVLFTIFRPVYLYLVEKKHWNKPLVAIMIILVSLIVIVIPFLSLSI 84

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             + ++  L S                ++ P   W + +     SH      +    +  
Sbjct: 85  LVVNKISSLTS----------------ANFPIQKWLAAIDAFAGSHLNQPHFVDNINITQ 128

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
               +             D  L+++ +   L+F +         L          +  K 
Sbjct: 129 KIGTYAAELFPSILGSAADIFLTLLVLYFLLYFMFTQNKEFEAGLIKYAP-FREQHALKF 187

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISF 262
           +  +     S  LG  II+I +G++      + GV   V  GVI   ++ +P  G P   
Sbjct: 188 ADELRISTYSNVLGQGIISISQGIMFAIGLRITGVEDPVFWGVIGTFISFLPVVGVPTLA 247

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
               I LL+    +    L ++G + +  +D  LR  +         L T  G++ G+  
Sbjct: 248 IPFGIILLLNDKTWQGVFLLIYGVLIIGYIDNFLRFIINKRIANTHPLITVIGVIIGIPL 307

Query: 323 MGLLGLFIGPVLMALIAVIWKES 345
            G+LGL  GPVL++   ++ +  
Sbjct: 308 FGILGLVFGPVLLSYFLLLVEIY 330


>gi|118475422|ref|YP_891668.1| acid membrane antigen A [Campylobacter fetus subsp. fetus 82-40]
 gi|118414648|gb|ABK83068.1| acid membrane antigen A [Campylobacter fetus subsp. fetus 82-40]
          Length = 367

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/346 (15%), Positives = 126/346 (36%), Gaps = 23/346 (6%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           L+  + +   +   +++   +  I ++F+      +   A I T+ +  +F +PL++   
Sbjct: 35  LFLFQSYLLTISIGVLLAVATSNIQNAFLRFTNGKAALSAAITTLFLCTVFFLPLIYAVI 94

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             +         +   +     +  +   +P  +   E   K L     L  L    L  
Sbjct: 95  EIVKNAANF--DIKSISHTIDYIKNFDLKLPQALSFLEPKIKELIAGIDLPTLIRKVL-- 150

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
                   +A        ++ + I F+++ LFF +         +  +   +     + I
Sbjct: 151 -------SYAKGSLEKSANFLIDISFIMLFLFFSHFYANFFKSYIKKVSP-IAKYELEAI 202

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISF 262
              V   +   F       I +G +        G    +  GV+ A  ++IP  G  + +
Sbjct: 203 FSEVANTMSVVFYSTIANMILQGFLFAIIASFYGFDG-LLFGVLFAFSSLIPVVGGALVY 261

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPF--------LVGGPIKLPFLPTF 313
             +S++    G+   A  + ++  + +  + D  ++P         L+  P K+  L  F
Sbjct: 262 IPLSVFEFSLGDTKAAIIILVYSIVVISTLADNFVKPLVIKFINEKLLKTPAKMNELLIF 321

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           F ++ G+ + G  G+ +GP ++ L++   +   M    + +  +  
Sbjct: 322 FSMLAGLSSFGFWGIVLGPAIVTLLSATLRVYAMLKSSDLDSKAKE 367


>gi|306837020|ref|ZP_07469966.1| integral membrane protein [Corynebacterium accolens ATCC 49726]
 gi|304567081|gb|EFM42700.1| integral membrane protein [Corynebacterium accolens ATCC 49726]
          Length = 486

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 62/344 (18%), Positives = 128/344 (37%), Gaps = 22/344 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLS--------ALIIGFTSWPIYSSFISKKEESST 60
           + + +  + FI++ +   L GF    +         A+++    +P+ +   SK     T
Sbjct: 81  RSMAKISVCFILIAAGLGLAGFLLRFIWVGLLPVILAILVSTVLYPVTAWLRSK-GFPRT 139

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             AV   + ++ +F      +      + K L+++        + + + ++D P  +   
Sbjct: 140 LAAVTTLLGLVVIFGGIFAAMAPMVTAQSKVLINEAEAGI---MQLTKMVNDSPLDIEVD 196

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +L        QS+     TF K           S F  +     ++ + M+   FF  +D
Sbjct: 197 QL--------QSVFQDIVTFAKGQASTIATGVVSGF-SMASSIAVATVIMLFITFFILKD 247

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G      L     +    +  +++  V K +        I+A+ + + +G   W   VP 
Sbjct: 248 GDRFLPWLRKYTGNSAAWHITELTSRVWKTLSGFIQAQAIVALVDAVFIGLGLWALQVPL 307

Query: 241 HVALGVITAIMAMIPGGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            + + VIT     IP    ++  A++ I  L+   + NA        I   +    L+P 
Sbjct: 308 ALVIAVITFFAGFIPIIGAVTAGALAVIIALVSNGLTNALLALALIIIVQQVESNVLQPI 367

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L    + L        +  G    G++G F+   + A IAV+ +
Sbjct: 368 LQSKAMGLHAAIVLLSITVGSTLAGIVGAFLAVPVAATIAVVLR 411


>gi|320094369|ref|ZP_08026156.1| integral membrane protein [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319978702|gb|EFW10258.1| integral membrane protein [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 517

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/315 (16%), Positives = 105/315 (33%), Gaps = 9/315 (2%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L+    PV  AL I     P+      +        A +  +    +FI  L       +
Sbjct: 116 LQEVLLPVAIALAIAVFLQPLVEWLRRRLHFPPALAATVGLLLFFVVFIAALSQATNQIV 175

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++  LV++     +  +    WL   P  +  + +          L          +  
Sbjct: 176 EQVPLLVNQATSGVKQLV---DWLEHGPIKVDTTAINNFVNQMRTELIEWV-----NSNK 227

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +   A       L    S + M+  LFFF +DG SI   +  L          + +  
Sbjct: 228 QSLATGALSITSSLLSMVTSGLTMLFCLFFFLKDGRSIWLWVVRLLPAPARVPLHESAIR 287

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
               + S       +A  + + +    +  G+P  V + VIT   A +P    ++  A++
Sbjct: 288 GWVTLGSYVRTQIQVAAIDAVGISLGAFFLGMPMVVPIAVITFFAAFVPIIGALASGAIA 347

Query: 267 IYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           + + L+     +A  + +   +   +    L+PF++   + L  +     +       G+
Sbjct: 348 VLVALVYKGATSAIIMLVIILVVQQVESNLLQPFMMSSAVSLHPVAVMLVITAAGSVGGI 407

Query: 326 LGLFIGPVLMALIAV 340
            G   G  + A I  
Sbjct: 408 AGAVFGVPIAAFINA 422


>gi|259046341|ref|ZP_05736742.1| transport protein [Granulicatella adiacens ATCC 49175]
 gi|259036978|gb|EEW38233.1| transport protein [Granulicatella adiacens ATCC 49175]
          Length = 389

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 67/326 (20%), Positives = 125/326 (38%), Gaps = 5/326 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+     PV    +I +   PIY   ++KK        ++  V V+ +FI+ +  L    
Sbjct: 52  FISAIGVPVACGAVIYYLVKPIYDYLLNKKVP-KGIAILLVMVGVIVIFIMIITSLVPII 110

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +LVS++    Q                   E + K  +      I S T      
Sbjct: 111 QKQLLDLVSQLPYYYQIISEQVEKFMQTGFFETIQEQFNKINTD----FIQSITERLNGI 166

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           ++F          I  D  ++I+ M + L++  +DG  +   +  +           +  
Sbjct: 167 LNFTFSGIGSVVGIIGDIVITIMTMPVILYYLLKDGNKVIPFVTRMFPTRSQHKISVMLN 226

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + + + S   G   +AI  G      Y L G+P  V +G+I  ++ +IP    I     
Sbjct: 227 EMNQQVSSYIRGQITVAICVGFTYIIGYTLIGLPYGVTIGMIAGLLTIIPYLGSIIGLTP 286

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ +    N   A  +FL   IE  I  + L+P ++G  +K+  +     L+   +  GL
Sbjct: 287 ALIIGFVTNPTLALHVFLVFVIEQLIESRVLQPLILGSSLKMHPVTILIILLAAGKMFGL 346

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKE 351
           +GL I   + A++ V         KE
Sbjct: 347 VGLLIAVPVYAVVKVFITHFFAWYKE 372


>gi|149278254|ref|ZP_01884392.1| hypothetical protein PBAL39_11872 [Pedobacter sp. BAL39]
 gi|149231020|gb|EDM36401.1| hypothetical protein PBAL39_11872 [Pedobacter sp. BAL39]
          Length = 350

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 62/343 (18%), Positives = 132/343 (38%), Gaps = 20/343 (5%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T      I   +I+ +  +  Y L+G F  +LS L++     P +   + +K+ +    A
Sbjct: 5   TYKQRNTINLVIIIALGCLIAYSLQGIFGSILSTLVMFTILRPAFMYLVEEKKMNKRVAA 64

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           V+  V  + + I+P   L    + ++ +L        +  I     L  +   +     +
Sbjct: 65  VLLLVVSVVVIILPFYALSTMVIEKIADL-------QKDQIYFKNLLFKLKHLIPVGGDF 117

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              +                   +++            +  L ++ M   L+F   +   
Sbjct: 118 QNLIEDG-----------MKKAGNWVTELFPSLISGAFNTVLGLLLMYFLLYFMLVERER 166

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
               L            ++ +  +     +  LG   IA+ +G ++  A+++   P  + 
Sbjct: 167 FESSLLKYAP-FREQNAQRFALEMRNTTYANVLGQGFIAMVQGSLVSLAFYVLDYPDPLF 225

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            GVIT  ++ +P  G PI F   +I  ++ GN   A  + ++G + +  +D  LR  +  
Sbjct: 226 WGVITTFISFVPVLGPPIVFVPAAIIQMLNGNNVAAWAMLIFGFVVIINIDNVLRFMIAK 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
               +  + T  G+V G+   G+LGL  GP+L++   ++ K  
Sbjct: 286 KVGNIHPIITVIGVVIGIPLFGILGLVFGPLLLSYFILLVKIY 328


>gi|161507183|ref|YP_001577137.1| putative permease [Lactobacillus helveticus DPC 4571]
 gi|160348172|gb|ABX26846.1| putative permease [Lactobacillus helveticus DPC 4571]
          Length = 399

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 59/340 (17%), Positives = 123/340 (36%), Gaps = 6/340 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F++  +  F      P+L A+I  +   P+   F  K +       ++  + V+   I
Sbjct: 42  ISFVLNPAWVFFSAILPPLLLAVIQYYVMNPVVDWFEKKFKVPRVVTILVLFLFVLIALI 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +  L      ++  L+          +   +     P            + + Q    
Sbjct: 102 WIINILVPIAQNQINSLIKNWPNIWNDAVNATQEALRDPRLHEVKGSLQNMIDNTQKTLF 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S        I  I    S   MI     ++++     LFF  +DG  +   +       
Sbjct: 162 KSGQSTINATIGNISSAVSIITMI----VMTLLTAPFILFFMLKDGHQLRPYITKFAPEH 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           + + + ++   +   + S   G   +A   G++    Y + G+P  +AL ++   M +IP
Sbjct: 218 WQSGFSQLLYDINYALASYIRGQITVAFWVGVMFVVGYMIIGLPYGLALAILAGFMNLIP 277

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G P++   V +  ++         + +   IE  I  + L P ++G  +++  + T  
Sbjct: 278 YFGTPLALIPVFVIAIMTSG-SMVIKVLVVFLIEQAIETRILSPLVMGNKMEMHPVTTIL 336

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            L+G     GL G+F G  + A++ +I        +   E
Sbjct: 337 LLIGASSVWGLWGVFFGIPIYAILKIIVSRVYNYYRRESE 376


>gi|282933487|ref|ZP_06338863.1| permease [Lactobacillus jensenii 208-1]
 gi|281302418|gb|EFA94644.1| permease [Lactobacillus jensenii 208-1]
          Length = 401

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 68/336 (20%), Positives = 127/336 (37%), Gaps = 6/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI+  +  F      P++ AL+  +   PI   F  K +   T   ++  + V+   I
Sbjct: 42  ISFILNPAWVFFCAILPPLILALVQYYMMNPIVDFFEQKLKVPRTVTILVLFLLVLGALI 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +  L      ++  L+          +   + L   P            +   +    
Sbjct: 102 WVINSLLPIIQGQVDVLIKNWPNIWDTSVKTTQNLLHDPHLKGFKSNINSVIDSVEKTLF 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S     T  +  I    S   MIF    ++++     LF+  +DG  ++  L       
Sbjct: 162 KSWQKTGTAALTNISSAVSVITMIF----MTLLTAPFVLFYMLKDGHQLNGCLTKFAPRR 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +   + ++   + + I +   G   +A+  G++    Y + G+P   AL V+ A M +IP
Sbjct: 218 WQDSFSRLLHDINEAISAYIRGQITVAVWVGIIYAIGYNIIGLPYGSALAVLAAFMLLIP 277

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G  I+   V I   I  +      + +  AIE  I  + + P +VG  +K+  + T  
Sbjct: 278 YFGTFIALIPVLIIASIT-SWGMLINVLIVFAIEQTIETRFISPIVVGNKMKMHPITTIL 336

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            L+G     GL G+  G  + A++ +I   S    K
Sbjct: 337 LLIGASAVWGLWGVIFGIPIYAVVKIIVSRSFNYFK 372


>gi|296118156|ref|ZP_06836737.1| putative permease [Corynebacterium ammoniagenes DSM 20306]
 gi|295968714|gb|EFG81958.1| putative permease [Corynebacterium ammoniagenes DSM 20306]
          Length = 510

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 59/344 (17%), Positives = 122/344 (35%), Gaps = 22/344 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKG-----F---FAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +    W I  +++    +L G     F     PV+ +LI+     PI S     K  S+ 
Sbjct: 71  KSASLWAIRLVVIGFFLYLLGEIIGSFWQGILPVVLSLIVCTVLSPIASKLRQFKFPSA- 129

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             ++I+ +  + +      F+      + + L  + V   Q    +  W    P      
Sbjct: 130 LASIISILLFVIIVGGIFSFVAPDFARQSQSLYLQAVEGIQR---LQLWAQGPP------ 180

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                + +   S       +++         F S  G    +  ++++ M +  FFF +D
Sbjct: 181 --LNLNAADIGSYVDEVANWIQQQAGSIAGSFISGVGTAT-NVVITLVVMTVMTFFFLKD 237

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G      +          +  +        +        ++++ + +V+G+  +  GVP 
Sbjct: 238 GHKFLPWIRQATSRRAGWHLTEALTRGWNTLGGYIRAQALVSLIDAVVIGAGLYAVGVPL 297

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSI-YLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +AL +IT +   IP    I   A+S+   L+      A  +     +   +    L P+
Sbjct: 298 AMALAIITFMAGFIPLIGAIVAGALSVLIALVSLGFTEALIVLGLVLLVQQLEGNVLSPW 357

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L    + L  +     +  G     L+G F+     A+IAV ++
Sbjct: 358 LQSKAMNLHPVIVLVSVTVGGALFNLIGAFLAVPAAAMIAVFYR 401


>gi|195952761|ref|YP_002121051.1| protein of unknown function UPF0118 [Hydrogenobaculum sp. Y04AAS1]
 gi|195932373|gb|ACG57073.1| protein of unknown function UPF0118 [Hydrogenobaculum sp. Y04AAS1]
          Length = 353

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 52/330 (15%), Positives = 124/330 (37%), Gaps = 7/330 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           Y +  FF P++ ++I     +P++       + S    ++I T+ ++ + ++P       
Sbjct: 25  YTIAPFFTPIVWSMIAIIVFYPLHKKLSHILK-SENLSSLIITILILLIVVIPFSVFGVL 83

Query: 85  GMLEMKELVSK----VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
            + +   LV      ++  +Q  + +      I G       + + L         +   
Sbjct: 84  IIEQGIYLVQNASAFIMSLDQQKVYLISKKLPIIGKHITYYKFLRFLHLNAPTINQAANS 143

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           + T    F+        +    + L  +  +++ FF  RD       +  +   +    +
Sbjct: 144 ILTYAASFLGDQLKNMVLFLGSFMLKALIFLMSTFFMLRDWDKFIDFVKDITP-MNTKDF 202

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAP 259
             I + V   + S   G    A+ + +     Y+       + L  IT + + IP  G  
Sbjct: 203 DTILKTVYSTVLSVVYGFVGTALIQAIFGFFMYYYFTPNYALVLAFITFMSSFIPPLGTA 262

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +     Y+  +  +  +   F +  + +   D  +RP L+   I +P++     ++GG
Sbjct: 263 LVWIPYGFYVAYQNGLLASLEAFAYSILFIIGSDNFVRPLLMKKAIHIPYILLSLSVLGG 322

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           + +MG LG+F+GP++   +   +       
Sbjct: 323 LFSMGFLGMFLGPIVFTTLITAFNIYKEKF 352


>gi|162455888|ref|YP_001618255.1| hypothetical protein sce7606 [Sorangium cellulosum 'So ce 56']
 gi|161166470|emb|CAN97775.1| hypothetical protein sce7606 [Sorangium cellulosum 'So ce 56']
          Length = 393

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 57/340 (16%), Positives = 123/340 (36%), Gaps = 10/340 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M++   + + +   +   +I +  + +KG   PVL   ++     P+      +      
Sbjct: 18  MQQDFQSDRWLSFALRAGLIALFFWMVKGLLVPVLLGGLVALLVSPLQRRLAPRLGRFRQ 77

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           F   I+TV V+ L  +PL  +       +    ++              +  +      +
Sbjct: 78  FAPAISTVGVIILVCIPLAVIIIEASASISRFFAR------DWSNTIERVEGLLNDGRIT 131

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L  +       ++       +  G   I  FA           +     I+ L++  RD
Sbjct: 132 GLLNRAGLSGDDVRTYVSNLFERVGSS-IAGFAGGMVAAVPQTIVDAFLFIVGLYYLLRD 190

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  + + L +            +   +   +    LG+   A  +G +   A +   VP 
Sbjct: 191 GGLLLRWLLTQSP-FRNEETDVLFASIQDTVHGAVLGLLATAAVQGTLTTIALFACKVPG 249

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
              LG++  +++++P  G        ++YL + G I     +    A+ + + D  +RP+
Sbjct: 250 AFLLGLLATLLSLVPMIGTTPVTLGAAVYLFVVGRIGAGIGMCAA-AVLIGLSDNVIRPW 308

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
           +      +  L     + GG+   G  G+FIGPV+ A++ 
Sbjct: 309 VQSSHGGMHPLIALLAIFGGLELFGAAGIFIGPVVAAIVL 348


>gi|293372558|ref|ZP_06618940.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
 gi|292632367|gb|EFF50963.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
          Length = 176

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 1/166 (0%)

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  +++   +  ++RS  +G+ ++AI +G V    Y L G P+ + LG +T    +
Sbjct: 10  PFNETNTQEVIHEINMIVRSNAIGIPLLAIIQGGVAMIGYLLFGAPNILMLGFLTCFATI 69

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP  G  + +  V+ YL I G+ FNA  LF +GAI +   D  +R  L         L T
Sbjct: 70  IPMVGTALVWFPVAAYLAISGDWFNAIGLFGYGAIVVSQSDNLIRFILQKKMADTHPLIT 129

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            FG+V G+   G +G+  GP+L++L  +          + +  + S
Sbjct: 130 IFGVVIGLPIFGFMGVIFGPLLLSLFFLFVDMFKKEYLDLRNNLPS 175


>gi|295426406|ref|ZP_06819056.1| membrane protein [Lactobacillus amylolyticus DSM 11664]
 gi|295063774|gb|EFG54732.1| membrane protein [Lactobacillus amylolyticus DSM 11664]
          Length = 404

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 57/345 (16%), Positives = 122/345 (35%), Gaps = 6/345 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F++  +  F      PVL A I  +   P+      K         ++  + V+   I
Sbjct: 42  ISFVLNPAWMFFSAILPPVLLATIQFYVMNPVVDWLEKKWRVPRVLTIIVLFLIVVVALI 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +  +      ++  LV          +   +     P          K + + Q    
Sbjct: 102 WIINTIIPIVQEQINSLVKNWPKIWDDAVNATQNALRDPRLNSVRSNIDKIIDNTQKTLF 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S        +  I    S   MI     ++++     LFF  +DG ++   +       
Sbjct: 162 KSGQTTVNVALTNISSAVSIITMI----IMTLMTAPFLLFFMLKDGHNLRPYITKFAPQR 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +   + K+   +   I S   G   +A   G++    Y + G+P    L ++   + +IP
Sbjct: 218 WQKSFGKLLWDINNAISSYIRGQITVAFWVGVMFAIGYTVVGLPYGYTLAILAGFLNLIP 277

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G  I+F    +  ++  ++     + +  AIE  I  + + P ++G  +++  + T  
Sbjct: 278 YFGTFIAFIPALVIGIMT-SVPMLIKVLIVFAIEQAIEGRVISPLVMGNKLEMHPITTIL 336

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            L+G     GL G+  G  + A++ +I        ++  +    +
Sbjct: 337 LLIGASAVWGLWGVVFGIPIYAVLKIIVSRVYNYYRKVSDVFDDD 381


>gi|294809934|ref|ZP_06768608.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
 gi|294442780|gb|EFG11573.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 176

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 1/166 (0%)

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  +++   +  ++RS  +G+ ++AI +G V    Y L G P+ + LG +T    +
Sbjct: 10  PFNETNTQEVIHEINMIVRSNAIGIPLLAIIQGGVATIGYLLFGAPNILLLGFLTCFATI 69

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP  G  + +  V+ YL I G+ FNA  +  +GAI +   D  +R  L         L T
Sbjct: 70  IPMVGTALVWFPVAAYLAISGDWFNAIGIAAYGAIVVSQSDNLIRFILQKKMADTHPLIT 129

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            FG+V G+   G +G+  GP+L+AL  +          + +  + S
Sbjct: 130 IFGVVIGLPLFGFMGVIFGPLLLALFFLFVDMFKKEYLDLRNNLPS 175


>gi|318042146|ref|ZP_07974102.1| hypothetical protein SCB01_10570 [Synechococcus sp. CB0101]
          Length = 347

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 65/322 (20%), Positives = 130/322 (40%), Gaps = 7/322 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L+ F   ++ A ++     P++     +      + A +  V  + + + P+  L    
Sbjct: 24  ILQPFAEILVWASLLAVILKPLHVWLQRRLRLGRWWAAGLIVVVGLLVLLGPVGALAAAL 83

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFLKTN 144
           +  + ELV  V    Q     P  L +IP  G     LW   +     L       L + 
Sbjct: 84  LSNVSELVHLVRHGQQSLPQPPTLLVEIPLVGPAIRPLWHGVIGDLHDLLRTHSETLTSL 143

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
           G   +    ++ G+ FL + +S++   +          ++  +L  L + L P + + + 
Sbjct: 144 GTRLLETTLAK-GLGFLKFVVSLLVAAL----MLVHSEALLLRLRRLLDRLVPEHSETVQ 198

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            I    +R+   G+  +A  + L++G     A VP    L V+  I+ ++  G P+    
Sbjct: 199 LITATTVRNVSRGVVGVAFLQSLLIGLGLVAADVPWSGLLTVVALILCLLQIG-PLPVVI 257

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           V++ +           L     +   +++  L+P L+   + +P L    G++GG    G
Sbjct: 258 VALAMAWNHLPPLLALLLSLWLVAATLLEHLLKPLLMARGLPVPMLVILAGVLGGTLKGG 317

Query: 325 LLGLFIGPVLMALIAVIWKESI 346
           L GLF+GPVL++L     +  +
Sbjct: 318 LAGLFLGPVLLSLGYHFVRLWV 339


>gi|313123300|ref|YP_004033559.1| permease [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279863|gb|ADQ60582.1| Predicted permease [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 384

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 118/336 (35%), Gaps = 6/336 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+     P+L A++  +   P+      K +   T   ++    V    I  +  L    
Sbjct: 36  FISAILPPLLVAMVQYYLMEPVVDKLEEKFKVPRTVTIMVIFAIVTVFLIWAINSLIPVV 95

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++  LV       ++       + ++      S L         SL+      + +  
Sbjct: 96  QSQIDSLVKNWPTIWKNST---NAVDELLHSPKFSGLRDSLQKQMTSLQKNFSKSMGSTV 152

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              +    S   +    +  ++      LFF  +DG  +   L       +     K+  
Sbjct: 153 SSALGNLTSAVTVATAVFT-TLATAPFLLFFMLKDGHKLRPFLVKFAPQRWEQATSKLLH 211

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTA 264
            V + + S  +G   +AI  G++L   Y + G P   AL + +  + +IP  G  I    
Sbjct: 212 EVNQAVSSYVIGQVSVAICVGIMLFIGYTIIGEPYGAALAICSGFLNLIPYFGTFIGLIP 271

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             I  L+      A  L ++  IE  I  + + P +VG  +K+    T   ++G     G
Sbjct: 272 ALIIALVTDLSMVAKVLVVF-FIEQIIETRVISPLVVGNRLKMHPATTIVVMLGAGSVWG 330

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           L G+  G  + A++ ++        ++       +F
Sbjct: 331 LWGVIGGIPIYAVMKILLTHVYWYYRKVSHLYDDSF 366


>gi|315231402|ref|YP_004071838.1| hypothetical protein TERMP_01640 [Thermococcus barophilus MP]
 gi|315184430|gb|ADT84615.1| hypothetical protein TERMP_01640 [Thermococcus barophilus MP]
          Length = 327

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 60/336 (17%), Positives = 137/336 (40%), Gaps = 29/336 (8%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +++ I+ ++   +    +P+  A I+ +  +PI+    S+     +  A+I T  ++ + 
Sbjct: 11  IVIAILYLAWSTVSQLLSPIFFAAILTYAVYPIHKHLSSRLSIKKS--ALILTAFLILIA 68

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
               + L       +      V+                         W++  + P  L 
Sbjct: 69  TGITIELILIFKNVLMSFYEDVIAFIS---------------------WSQTFTFPFGLT 107

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
            + + F       F   +   +      Y L ++  ++  ++F     +I +Q+  L   
Sbjct: 108 NVIQKFYAQFTPKF-SEYILSYTFSIPKYLLQLVIFVVMFYYFLVSSEAIRRQISLLLPQ 166

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA---GVPSHVALGVITAIM 251
                  K+ +     +++      ++ I +G+++   + +     VP+ V  G +T + 
Sbjct: 167 ENKELANKLLKRADLTLQALIRAWLLLNIAKGILMTLGFIVFQVSDVPTAVIAGFLTVLF 226

Query: 252 AMIPGG-APISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLVGGPIKLPF 309
           + +P     + + A +IYL   GN+  A  L ++G + +  + D T+RP LV    +L  
Sbjct: 227 SFVPLFEGWMIWLAGAIYLFKNGNVITAILLAVYGFVFVSPLPDFTVRPKLVAKGAQLDE 286

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +    G++GG  + G+ GL IGP+++ L+  + KE 
Sbjct: 287 VMVLVGMIGGAWSFGVKGLIIGPIVLNLVVALLKEW 322


>gi|256851487|ref|ZP_05556876.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
 gi|260660908|ref|ZP_05861823.1| permease [Lactobacillus jensenii 115-3-CHN]
 gi|256616549|gb|EEU21737.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
 gi|260548630|gb|EEX24605.1| permease [Lactobacillus jensenii 115-3-CHN]
          Length = 395

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 68/336 (20%), Positives = 127/336 (37%), Gaps = 6/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI+  +  F      P++ AL+  +   PI   F  K +   T   ++  + V+   I
Sbjct: 36  ISFILNPAWVFFCAILPPLILALVQYYMMNPIVDFFEQKLKVPRTVTILVLFLLVLGALI 95

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +  L      ++  L+          +   + L   P            +   +    
Sbjct: 96  WVINSLLPIIQGQVDVLIKNWPNIWDTSVKTTQNLLHDPHLKGFKSNINSVIDSVEKTLF 155

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S     T  +  I    S   MIF    ++++     LF+  +DG  ++  L       
Sbjct: 156 KSWQKTGTAALTNISSAVSVITMIF----MTLLTAPFVLFYMLKDGHQLNGCLTKFAPRR 211

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +   + ++   + + I +   G   +A+  G++    Y + G+P   AL V+ A M +IP
Sbjct: 212 WQDSFSRLLHDINEAISAYIRGQITVAVWVGIIYAIGYNIIGLPYGSALAVLAAFMLLIP 271

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G  I+   V I   I  +      + +  AIE  I  + + P +VG  +K+  + T  
Sbjct: 272 YFGTFIALIPVLIIASIT-SWGMLINVLIVFAIEQTIETRFISPIVVGNKMKMHPITTIL 330

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            L+G     GL G+  G  + A++ +I   S    K
Sbjct: 331 LLIGASAVWGLWGVIFGIPIYAVVKIIVSRSFNYFK 366


>gi|157415601|ref|YP_001482857.1| hypothetical protein C8J_1281 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|283956749|ref|ZP_06374225.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni 1336]
 gi|157386565|gb|ABV52880.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni 81116]
 gi|283791724|gb|EFC30517.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni 1336]
 gi|307748244|gb|ADN91514.1| Putative membrane protein [Campylobacter jejuni subsp. jejuni M1]
          Length = 347

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 65/329 (19%), Positives = 130/329 (39%), Gaps = 23/329 (6%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           ++ A ++   +  I + F++  +      +++ T  ++ LF  P ++        +K   
Sbjct: 30  IIIASLMAVATSNINAKFLNLTKGHKFLASILTTTCMVLLFFAPFVYAMIELAKALKNF- 88

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             + L  Q    V  +   +P      E   K       L  +S+  L          +A
Sbjct: 89  -DINLVTQTLDYVKNYQFTLPESFNFLEPKIKEFLASIDLNSISKQIL---------SYA 138

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
           S F      + + ++ + +  FF    G  +   L S+   +       +   V  V+  
Sbjct: 139 SSFTKSGAKFLIDMVLICVFYFFANLYGTELVIYLKSIIP-IDKKELDDVLSEVGNVMAV 197

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIK 272
               M I+AI +G + G      G    + +GVI A+ ++IP  G  + +  VS+Y    
Sbjct: 198 VLYSMVIVAIFQGALFGLITMFYGYDG-ILMGVIFAVSSLIPAIGGALIYVPVSLYEFAS 256

Query: 273 GNIFNATCLFLWGAIEL-FIVDKTLRPF--------LVGGPIKLPFLPTFFGLVGGVRTM 323
            N+ +A  +F++  I + FI D  ++P         LV  P K+  L  F  ++ G+ T 
Sbjct: 257 NNLNSALVIFIYSVIVISFIADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTF 316

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           G  G+ +GP ++       +  ++   +N
Sbjct: 317 GFWGIILGPAILTFFVSTLRMYVILKDKN 345


>gi|28378815|ref|NP_785707.1| transport protein [Lactobacillus plantarum WCFS1]
 gi|254557021|ref|YP_003063438.1| transport protein [Lactobacillus plantarum JDM1]
 gi|300768859|ref|ZP_07078753.1| membrane protein [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|28271652|emb|CAD64558.1| transport protein [Lactobacillus plantarum WCFS1]
 gi|254045948|gb|ACT62741.1| transport protein [Lactobacillus plantarum JDM1]
 gi|300493592|gb|EFK28766.1| membrane protein [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
          Length = 384

 Score =  112 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 50/363 (13%), Positives = 138/363 (38%), Gaps = 23/363 (6%)

Query: 7   NPQGIMRWMIMFIILVSLYFL-----------KGFFA----PVLSALIIGFTSWPIYSSF 51
           + Q ++R +++ +++++++F+           + FF+    P++ A ++ +   P+    
Sbjct: 11  SAQRLIRILVVILLVLTIFFMGKQVDWLLDPVRQFFSIVGLPIILAGVLYYLLNPLVDWL 70

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVS-KVVLANQHGIPVPRWL 110
             +     T+  +   + V+ L  + ++ +      +   +++            V RWL
Sbjct: 71  EKRFRVRRTWTIIGLFIVVVALLALGIIAIIPTIRDQTLSIINDWPNYWKNASTEVNRWL 130

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
           +D        +L + +    + +      +L            +          + +I M
Sbjct: 131 NDPQLSSIRDQLESWNTDLSKLVSGRFSKYLTGT-----VTSLTGVFSTVTTVIIGLITM 185

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
              LF+  RDG  + + +         + + ++   +   + +   G   +A    ++  
Sbjct: 186 PFILFYLLRDGHQLPKYMAKFVPTKARSGFLEVLTEINSQVSNYIRGQLTVAFFVAVMFA 245

Query: 231 SAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
             Y + G+   + LG+   I+ +IP  G+ ++     +  L+         L ++  IE 
Sbjct: 246 VGYSIIGLKFALTLGIAAGILNLIPYLGSFLAMVPSVVIALVTSPWMLVQVLIVF-VIEQ 304

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            I  + + P ++G  + +  +     L+   +  GL+G+  G    A++ V+W       
Sbjct: 305 TIEGRFISPLVLGSSLAIHPITILVVLLAAGKIFGLMGVIFGIPGYAILKVLWTHLFDWY 364

Query: 350 KEN 352
           + +
Sbjct: 365 RRS 367


>gi|315931421|gb|EFV10389.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 347

 Score =  112 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 65/329 (19%), Positives = 130/329 (39%), Gaps = 23/329 (6%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           ++ A ++   +  I + F++  +      +++ T  ++ LF  P ++        +K   
Sbjct: 30  IIIASLMAVATSNINAKFLNLTKGHKFLASILTTTCMVLLFFAPFVYAMIELAKALKNF- 88

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             + L  Q    V  +   +P      E   K       L  +S+  L          +A
Sbjct: 89  -DINLVTQTLDYVKNYQFTLPESFNFLEPKIKEFLASIDLNSISKQIL---------SYA 138

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
           S F      + + ++ + +  FF    G  +   L S+   +       +   V  V+  
Sbjct: 139 SSFTKSGAKFLIDMVLICVFYFFANLYGTELVIYLKSIIP-IDKKELDDVLSEVGNVMAV 197

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIK 272
               M I+AI +G + G      G    + +GVI A+ ++IP  G  + +  VS+Y    
Sbjct: 198 VLYSMVIVAIFQGALFGLITMFYGYDG-ILMGVIFAVSSLIPAIGGALIYVPVSLYEFTS 256

Query: 273 GNIFNATCLFLWGAIEL-FIVDKTLRPF--------LVGGPIKLPFLPTFFGLVGGVRTM 323
            N+ +A  +F++  I + FI D  ++P         LV  P K+  L  F  ++ G+ T 
Sbjct: 257 NNLNSALVIFIYSVIVISFIADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTF 316

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           G  G+ +GP ++       +  ++   +N
Sbjct: 317 GFWGIILGPAILTFFVSTLRMYVILKDKN 345


>gi|225022466|ref|ZP_03711658.1| hypothetical protein CORMATOL_02506 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944705|gb|EEG25914.1| hypothetical protein CORMATOL_02506 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 430

 Score =  112 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 61/339 (17%), Positives = 116/339 (34%), Gaps = 20/339 (5%)

Query: 11  IMRWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
            +R++IM      L+     +     PVL A+I+    WP        K       + ++
Sbjct: 37  ALRFIIMVAAGYLLWRGLALVWEGLLPVLLAIIVSTVLWPPVRWLRKHK-----VPSALS 91

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI-PVPRWLSDIPGGMWASELWTK 125
            V V+  F   L  +F      +      +      GI  + +W+   P           
Sbjct: 92  VVIVLITFFAILGGIFTAMAPSITTQSKDLAEQATKGIEQLQQWIQGPP--------LNI 143

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L H   +     TFL+    D   R  S          ++ + M++  FFF +DG    
Sbjct: 144 DLGHYNDIIDQISTFLQNRVTDIASRVVSGI-STAGSIVVTFVLMLVLTFFFLKDGEGFL 202

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +     +    +  ++   +   +        II+  +   +     +  VP   AL 
Sbjct: 203 PMIRRTTGYNVGWHLTEVLTRIWNTLSGFIRVQAIISFVDASCICIGLLILHVPLAPALA 262

Query: 246 VITAIMAMIPGGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           VIT   + IP    +   A++ I  L+   + NA  +         +    L+P L    
Sbjct: 263 VITFFASFIPIVGALVAGALAVIIALVSNGVTNALLVLAIIIAVQQLEGHILQPVLQSKA 322

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           + L        +  G    G++G F+   + A ++V+ +
Sbjct: 323 MNLHAAIVLLSVTIGSTMFGVVGAFLAVPVAATLSVLVR 361


>gi|223039328|ref|ZP_03609617.1| acid membrane antigen A [Campylobacter rectus RM3267]
 gi|222879389|gb|EEF14481.1| acid membrane antigen A [Campylobacter rectus RM3267]
          Length = 346

 Score =  112 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 68/352 (19%), Positives = 137/352 (38%), Gaps = 23/352 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N +       +  + +  Y  K F   +  A ++   +  I   F+   +   T  A +
Sbjct: 1   MNNRVFFGIFALCALALVAYLFKPFLLNIFIAALLAVATSNINVKFLQLTKGKKTLSAAL 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T+ +  LFI P L+             +  V           +   +P  +   E    
Sbjct: 61  TTIVLFSLFIAPFLYAVIEIARNAASFNTSYVTNTLDYFQSGNF--QLPEPIKFME---- 114

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
               P+  +I+++  +K    + I   A   G   +++ + ++F+++  FF    G  ++
Sbjct: 115 ----PKIKEIIADIDVKAISANIIANLAG-IGKSSVNFLIDMVFILVFFFFAILYGSELA 169

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L S    +  +  + I   V  V+      + + AI +G +        G  +   +G
Sbjct: 170 GYLKSALP-MKESESEFILSEVVNVMSVVLYSIVLNAILQGCLFAIIMISYGY-NGFLMG 227

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPF---- 299
           +I A  ++IP  G  +++  +S+Y    GN   A  + ++  + + IV D  L+P     
Sbjct: 228 IIFAFTSLIPVVGGLLAWGPISLYEFANGNTAAAVVIAVYTVVVISIVADTFLKPIVIKF 287

Query: 300 ----LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
               LV  P K+  L  FF ++ G+ T G  GL +GP ++       K   +
Sbjct: 288 INDRLVKIPAKINELLIFFSMIAGISTFGFWGLILGPAIVTFFISTIKLYTL 339


>gi|237785192|ref|YP_002905897.1| putative permease family transporter [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758104|gb|ACR17354.1| transporter of the putative permease family [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 448

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 44/324 (13%), Positives = 106/324 (32%), Gaps = 15/324 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P+L ALII    W   +             A+++ +  + + +     +    + +  
Sbjct: 103 VLPILIALIICTLLWVPTNWMRKAHFPR-WLAALVSVLGALAIIVGLFSLIAPSAVEQSS 161

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           +L  + +   +    V  ++   P           +              +K++    I 
Sbjct: 162 QLADQSIKGLEK---VQNYVQGPP--------LNLNDQQVNDYLDEGIDKIKSSSDQIIA 210

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              +       +  + +  +++  FFF +DG      L  +       +  ++ +     
Sbjct: 211 GVVTGVNKAS-ELAVMLGVILMITFFFLKDGDRFLPWLGKISGKRGEGHIVELLQRSWNT 269

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI-YL 269
           +        ++++ +   +G    +  VP  + L VIT +   IP    I   AV++   
Sbjct: 270 LGGFIRAQAVVSLIDAFFIGLGLIILNVPLALPLAVITFMGGFIPIVGAIVAGAVAVLIA 329

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           L+   +  A  +         +    L P L    + L  +     +  G    G++G F
Sbjct: 330 LVSNGLTTALIVLAIIIAVQQLEGNVLSPVLQSKAMNLHPVIVLLSVTVGSNLYGIIGAF 389

Query: 330 IGPVLMALIAVIWKESIMAIKENK 353
           +   +MA    +W      + + +
Sbjct: 390 LAVPVMA-TIAVWLRYFSELIDKE 412


>gi|86151004|ref|ZP_01069220.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315124803|ref|YP_004066807.1| hypothetical protein ICDCCJ07001_1299 [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85842174|gb|EAQ59420.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315018525|gb|ADT66618.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 347

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 65/329 (19%), Positives = 130/329 (39%), Gaps = 23/329 (6%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           ++ A ++   +  I + F++  +      +++ T  ++ LF  P ++        +K   
Sbjct: 30  IIIASLMAVATSNINAKFLNLTKGHKFLASILTTACMVLLFFAPFVYAMIELAKALKNF- 88

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             + L  Q    V  +   +P      E   K       L  +S+  L          +A
Sbjct: 89  -DINLVTQTLDYVKNYQFTLPESFNFLEPKIKEFLASIDLNSISKQIL---------SYA 138

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
           S F      + + ++ + +  FF    G  +   L S+   +       +   V  V+  
Sbjct: 139 SSFTKSGAKFLIDMVLICVFYFFANLYGTELVIYLKSIIP-IDKKELDDVLSEVGNVMAV 197

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIK 272
               M I+AI +G + G      G    + +GVI A+ ++IP  G  + +  VS+Y    
Sbjct: 198 VLYSMVIVAIFQGALFGLITMFYGYDG-ILMGVIFAVSSLIPAIGGALIYVPVSLYEFAS 256

Query: 273 GNIFNATCLFLWGAIEL-FIVDKTLRPF--------LVGGPIKLPFLPTFFGLVGGVRTM 323
            N+ +A  +F++  I + FI D  ++P         LV  P K+  L  F  ++ G+ T 
Sbjct: 257 NNLNSALVIFIYSVIVISFIADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTF 316

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           G  G+ +GP ++       +  ++   +N
Sbjct: 317 GFWGIILGPAILTFFVSTLRMYVILKDKN 345


>gi|305431582|ref|ZP_07400756.1| acid membrane antigen A [Campylobacter coli JV20]
 gi|304445389|gb|EFM38028.1| acid membrane antigen A [Campylobacter coli JV20]
          Length = 347

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 70/358 (19%), Positives = 141/358 (39%), Gaps = 23/358 (6%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +  +   I+ ++ + LY  KGF   ++ A ++   +    + F+S         ++
Sbjct: 1   MQTGKIFLICFILVVLSLLLYLFKGFLLVIIIASLMAVATSNANAKFLSLTNGRKFLASM 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           + T  ++ LF  P ++        +K     + L  Q    V  +   +P  +   E   
Sbjct: 61  LTTACMVLLFFAPFVYAMIELAKALKNF--DINLVTQTLNYVKNYQFTLPESLSFLEPKI 118

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           K       L  +S+  L          +AS F      + + ++ + I  FF    G  +
Sbjct: 119 KEFLASIDLNSISKQIL---------NYASSFTKSGAKFLIDMVLICIFYFFANLYGTEL 169

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              + S+   +       I   V  V+      M IIAI +G +        G    + +
Sbjct: 170 VIYIKSVIP-IDKQELDDILSEVGNVMAVVLYSMIIIAILQGALFSIIAMFYGYD-AILM 227

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPF--- 299
           GVI A+ ++IP  G  + +  +S+Y     ++ +A  +F++  + + FI D  ++P    
Sbjct: 228 GVIFAVSSLIPALGGALVYIPISLYEFASSSLGSALVIFIYSVVVISFIADTLVKPLIIK 287

Query: 300 -----LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
                LV  P K+  L  F  ++ G+ T G  G+ +GP ++       +  ++   +N
Sbjct: 288 WINEKLVKTPAKINELLIFLAMIAGISTFGFWGIILGPAILTFFISTIRLYMILKDKN 345


>gi|205356191|ref|ZP_03222958.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346034|gb|EDZ32670.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 312

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 64/323 (19%), Positives = 126/323 (39%), Gaps = 23/323 (7%)

Query: 40  IGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA 99
           +   +  I + F++  +      +++ T  ++ LF  P ++        +K     + L 
Sbjct: 1   MAVATSNINAKFLNLTKGHKFLASILTTACMVLLFFAPFVYAMIELAKALKNF--DINLV 58

Query: 100 NQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI 159
            Q    V  +   +P      E   K       L  +S+  L          +AS F   
Sbjct: 59  TQTLDYVKNYQFTLPESFNFLEPKIKEFLASVDLNSISKQIL---------SYASSFTKS 109

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
              + + ++ + +  FF    G  +   L S+   +       +   V  V+      M 
Sbjct: 110 GAKFLIDMVLICVFYFFANLYGTELVIYLKSIIP-IDKKELDDVLSEVGNVMAVVLYSMV 168

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNA 278
           I+AI +G + G      G    + +GVI A+ ++IP  G  + +  VS+Y     N+ +A
Sbjct: 169 IVAIFQGALFGLITMFYGYDG-ILMGVIFAVSSLIPAIGGALIYVPVSLYEFASNNLNSA 227

Query: 279 TCLFLWGAIEL-FIVDKTLRPF--------LVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +F++  I + FI D  ++P         LV  P K+  L  F  ++ G+ T G  G+ 
Sbjct: 228 LVIFIYSVIVISFIADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFGFWGII 287

Query: 330 IGPVLMALIAVIWKESIMAIKEN 352
           +GP ++       +  ++   +N
Sbjct: 288 LGPAILTFFVSTLRMYVILKDKN 310


>gi|104773700|ref|YP_618680.1| hypothetical protein Ldb0590 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116513697|ref|YP_812603.1| permease [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|103422781|emb|CAI97420.1| Conserved hypothetical membrane protein [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116093012|gb|ABJ58165.1| Predicted permease [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|325125348|gb|ADY84678.1| Putative permease [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 378

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 117/336 (34%), Gaps = 6/336 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+     P+L A++  +   P+      K +   T   ++    V    I  +  L    
Sbjct: 48  FISAILPPLLVAMVQYYLMEPVVDKLEEKFKVPRTVTIMVIFAIVTVFLIWAINSLIPVV 107

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++  LV       ++       + ++      S L         SL+      + +  
Sbjct: 108 QSQIDSLVKNWPTIWKNST---NAVDELLHSPKFSGLRDSLQKQMTSLQKNFSKSMGSTV 164

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              +    S   +    +  ++      LFF  +DG  +   L       +     K+  
Sbjct: 165 SSALGNLTSAVTVATAVFT-TLATAPFLLFFMLKDGHKLRPFLVKFAPQRWEQATSKLLH 223

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTA 264
            V + + S  +G   +AI  G++    Y + G P   AL +    + +IP  GA I    
Sbjct: 224 EVNQAVSSYVIGQVSVAICVGIMFFIGYTIIGEPYGAALAICAGFLNLIPYFGAFIGLIP 283

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             I  L+      A  L ++  IE  I  + + P +VG  +K+    T   ++G     G
Sbjct: 284 ALIIALVTDLPMVAKVLVVF-FIEQIIETRVISPLVVGNRLKMHPATTIIVMLGAGSVWG 342

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           L G+  G  + A++ ++        ++       +F
Sbjct: 343 LWGVIGGIPIYAVMKILLTHVYRYYRKVSHLYDDSF 378


>gi|308181014|ref|YP_003925142.1| transport protein [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|308046505|gb|ADN99048.1| transport protein [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 384

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/363 (13%), Positives = 139/363 (38%), Gaps = 23/363 (6%)

Query: 7   NPQGIMRWMIMFIILVSLYFL-----------KGFFA----PVLSALIIGFTSWPIYSSF 51
           + Q ++R +++ +++++++F+           + FF+    P++ A ++ +   P+    
Sbjct: 11  SAQRLIRILVVILLVLTIFFMGKQVDWLLDPVRQFFSIVGLPIILAGVLYYLLNPLVDWL 70

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVS-KVVLANQHGIPVPRWL 110
             +     T+  +   + V+ L  + ++ +      +   +++            V RWL
Sbjct: 71  EKRFRVRRTWTIIGLFIVVVALLALGIIAIIPTIRDQTLSIINDWPNYWKNASTEVNRWL 130

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
           +D        +L + +    + +      +L            +          + +I M
Sbjct: 131 NDPQLSSIRDQLESWNTDLSKLVSGRFSKYLTGT-----VTSLTGVFSTVTTVIIGLITM 185

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
              LF+  RDG  + + +         + + ++   +   + +   G   +A    ++  
Sbjct: 186 PFILFYLLRDGHQLPKYMAKFVPTKARSGFLEVLSEINSQVSNYIRGQLTVAFFVAVMFA 245

Query: 231 SAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
           + Y + G+   + LG+   I+ +IP  G+ ++     +  L+         L ++  IE 
Sbjct: 246 AGYSIIGLKFALTLGIAAGILNLIPYLGSFLAMVPSVVIALVTSPWMLVQVLIVF-VIEQ 304

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            I  + + P ++G  + +  +     L+   +  GL+G+  G    A++ V+W       
Sbjct: 305 TIEGRFISPLVLGSSLAIHPITILVVLLAAGKIFGLMGVIFGIPGYAILKVLWTHLFDWY 364

Query: 350 KEN 352
           + +
Sbjct: 365 RRS 367


>gi|229495330|ref|ZP_04389065.1| putative membrane protein [Porphyromonas endodontalis ATCC 35406]
 gi|229317773|gb|EEN83671.1| putative membrane protein [Porphyromonas endodontalis ATCC 35406]
          Length = 328

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 99/301 (32%), Gaps = 16/301 (5%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
             + +  L A+ +             K        A +  +  + LF++PL  +    + 
Sbjct: 41  LPYLSGFLGAITLFSILRGQMRFLTKKWHFPRWLAAFLLILETLFLFLLPLAGIASMLID 100

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
                     L   + I +  W        W  E                   +      
Sbjct: 101 ----------LFTHNHIDLNEWYHQ--AVQWVDEAKEWIGVDFVKRDGFFVEQVLPALTK 148

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
               F ++  +      ++ + ++  L++   +       +  L         + +    
Sbjct: 149 MGQTFTTKIVVGVYSLVVNSVVLLFVLYYMLYEREYFETAIRELLP-FTEENKRILVSET 207

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVS 266
            ++I +  +G+ +IAI +G      Y   GV   +   V+TA   +IP  G  + +  ++
Sbjct: 208 QRIIAANAVGIPLIAIVQGGFAYLGYIFFGVEGALFYAVLTAFATIIPMVGTMVVYVPLA 267

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG--VRTMG 324
           +     GN  +   L ++G + +  +D  +R  L      +  L T FG++ G  +   G
Sbjct: 268 LAFGFAGNWGSCIGLLIYGFLVIGGIDNVIRFLLQKSLADIHPLVTVFGVIFGVSILVFG 327

Query: 325 L 325
           +
Sbjct: 328 V 328


>gi|238854901|ref|ZP_04645231.1| transport protein [Lactobacillus jensenii 269-3]
 gi|282931613|ref|ZP_06337106.1| permease [Lactobacillus jensenii 208-1]
 gi|238832691|gb|EEQ24998.1| transport protein [Lactobacillus jensenii 269-3]
 gi|281304224|gb|EFA96333.1| permease [Lactobacillus jensenii 208-1]
          Length = 401

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 60/310 (19%), Positives = 115/310 (37%), Gaps = 6/310 (1%)

Query: 42  FTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ 101
           +   PI   F  K +   T   ++  + V+   I  +  L      ++  L+        
Sbjct: 68  YMMNPIVDFFEQKLKVPRTVTILVLFLLVLGALIWIINSLLPIIQNQVDALIKNWPNIWD 127

Query: 102 HGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL 161
             +   + L   P            +   +     S     T  +  I    S   MIF 
Sbjct: 128 TSVKTIQNLLHDPHLKGVKSNINSVIDSIEKTLFKSWQDTGTAALTNISSAVSVITMIF- 186

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
              ++++     LF+  +DG  ++  L       +   + ++   + + I +   G   +
Sbjct: 187 ---MTLLTAPFVLFYMLKDGHQLNGYLTKFAPRRWQDSFSRLLHDINEAISAYIRGQITV 243

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATC 280
           A+  G++    Y + G+P   AL V+ A M +IP  G  I+   V I   I  +      
Sbjct: 244 AVWVGIIYAIGYNIIGLPYGSALAVLAAFMLLIPYFGTFIALIPVLIIASIT-SWGMLIN 302

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           + +  AIE  I  + + P +VG  +K+  + T   L+G     GL G+  G  + A++ +
Sbjct: 303 VLIVFAIEQTIETRFISPIIVGNKMKMHPITTILLLIGASAVWGLWGVIFGIPIYAVVKI 362

Query: 341 IWKESIMAIK 350
           +   S    K
Sbjct: 363 VVSRSFNYFK 372


>gi|57168276|ref|ZP_00367415.1| acid membrane antigen A Cj1363 [Campylobacter coli RM2228]
 gi|57020650|gb|EAL57319.1| acid membrane antigen A Cj1363 [Campylobacter coli RM2228]
          Length = 347

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 70/358 (19%), Positives = 140/358 (39%), Gaps = 23/358 (6%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +  +   I+ ++ + LY  KGF   ++ A ++   +    + F+S         ++
Sbjct: 1   MQTGKIFLICFILVVLSLLLYLFKGFLLVIIIASLMAVATSNANAKFLSLTNGRKFLASM 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           + T  ++ LF  P ++        +K     + L  Q    V  +   +P  +   E   
Sbjct: 61  LTTACMVLLFFAPFVYAMIELAKALKNF--DINLVTQTLNYVKNYQFTLPESLSFLEPKI 118

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           K       L  +S+  L          +AS F      + + ++ + I  FF    G  +
Sbjct: 119 KEFLASIDLNSISKQIL---------NYASSFTKSGAKFLIDMVLICIFYFFANLYGTEL 169

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              + S+   +       I   V  V+      M IIAI +G +        G    + +
Sbjct: 170 VIYIKSVIP-IDKQELDDILSEVGNVMAVVLYSMIIIAILQGALFSIIAMFYGYD-AILM 227

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPF--- 299
           GVI A+ ++IP  G  + +  +S+Y      + +A  +F++  + + FI D  ++P    
Sbjct: 228 GVIFAVSSLIPALGGALVYIPISLYEFASSGLGSALVIFIYSVVVISFIADTLVKPLIIK 287

Query: 300 -----LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
                LV  P K+  L  F  ++ G+ T G  G+ +GP ++       +  ++   +N
Sbjct: 288 WINEKLVKTPAKINELLIFLAMIAGISTFGFWGIILGPAILTFFISTIRLYMILKDKN 345


>gi|153952049|ref|YP_001397505.1| hypothetical protein JJD26997_0286 [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939495|gb|ABS44236.1| putative membrane protein [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 347

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 65/329 (19%), Positives = 130/329 (39%), Gaps = 23/329 (6%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           ++ A ++   +  I + F++  +      +++ T  ++ LF  P ++        +K   
Sbjct: 30  IIIASLMAVATSNINAKFLNLTKGHKFLASILTTACMVLLFFAPFVYGMIELAKALKNF- 88

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             + L  Q    V  +   +P      E   K       L  +S+  L          +A
Sbjct: 89  -DINLVTQTLDYVKNYQFTLPESFNFLEPKIKEFLASIDLNSISKQIL---------SYA 138

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
           S F      + + ++ + +  FF    G  +   L S+   +       +   V  V+  
Sbjct: 139 SNFTKSGAKFLVDMVLICVFYFFANLYGTELVIYLKSIVP-IDKKELDDVLSEVGNVMAV 197

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIK 272
               M I+AI +G + G      G    + +GVI A+ ++IP  G  + +  VS+Y    
Sbjct: 198 VLYSMVIVAIFQGALFGLITMFYGYDG-ILMGVIFAVSSLIPAIGGALIYVPVSLYEFAS 256

Query: 273 GNIFNATCLFLWGAIEL-FIVDKTLRPF--------LVGGPIKLPFLPTFFGLVGGVRTM 323
            N+ +A  +F++  I + FI D  ++P         LV  P K+  L  F  ++ G+ T 
Sbjct: 257 NNLNSALVIFIYSVIIISFIADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTF 316

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           G  G+ +GP ++       +  ++   +N
Sbjct: 317 GFWGIILGPAILTFFVSTLRMYVILKDKN 345


>gi|54026317|ref|YP_120559.1| hypothetical protein nfa43460 [Nocardia farcinica IFM 10152]
 gi|54017825|dbj|BAD59195.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 408

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/311 (15%), Positives = 109/311 (35%), Gaps = 17/311 (5%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           +  L+ +     PV  AL++    WP      +         A ++ +  + +    +  
Sbjct: 76  IALLWVI---VLPVALALVVATVLWPPTRWLTNH-GVRPGLAATLSVLGFLGILAGVIAL 131

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           +      +  +L  K          V  WL   P  +   +L     +    L+  +E  
Sbjct: 132 IVPSVADQAPDLADKASEGINK---VRDWLRGPPLRIRDEQLDQAVDTIGNRLQSSAEQ- 187

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
                   I               +++  +++  FFF +DG      L S+       ++
Sbjct: 188 --------IATGVFSGVTTATSALITLFLVLVLAFFFIKDGPKFLPWLHSVTGAGAGRHF 239

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAP 259
           +++   +   +        ++++ + +++G+   + GVP  + L V+T I   IP  GA 
Sbjct: 240 EEVLNRIWVTLGGFIRTQALVSLIDAVLIGAGLVILGVPLSLVLAVLTFIGGFIPIVGAF 299

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           ++     +  L+   +  A  +         +    L+P L    ++L  +     +  G
Sbjct: 300 VAGALAVLVALVANGVTTALIVLAIIIAVQQLEGNILQPVLQSRSMQLHAVVVLLAVTAG 359

Query: 320 VRTMGLLGLFI 330
               G++G F+
Sbjct: 360 GSLYGIVGAFL 370


>gi|227893168|ref|ZP_04010973.1| permease [Lactobacillus ultunensis DSM 16047]
 gi|227865034|gb|EEJ72455.1| permease [Lactobacillus ultunensis DSM 16047]
          Length = 400

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/340 (17%), Positives = 124/340 (36%), Gaps = 6/340 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F++  +  F      P+L A+I  +   P+   F  K +       ++  + V+   I
Sbjct: 42  ISFVLNPAWVFFSAVLPPLLLAIIQYYIMNPVVDWFEKKFKVPRVATIIVLFLFVIIALI 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +  L      ++  LV          +   +     P            + + Q    
Sbjct: 102 WIINILVPMAQNQINSLVKNWPHIWNDAVNTTQSALRDPRLSPVKGSLKSMIDNTQRTLF 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S        +  I    S   MI     ++++     LFF  +DG  +   +       
Sbjct: 162 KSGQSTVNATLGNISSAVSIITMI----VMTLLTAPFILFFMLKDGHQLRPYITKFAPEN 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           + A + K+   +   + S   G   +A   G++    Y + G+P  +AL ++   M +IP
Sbjct: 218 WQASFSKLLYDINYALASYIRGQITVAFWVGVMFTIGYIVIGLPYGLALAILAGFMNLIP 277

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G P++   V +  ++  ++     + +   IE  I  + L P ++G  +++  + T  
Sbjct: 278 YFGTPLALIPVIVIAVMT-SVPMLIKVLVIFVIEQAIETRILSPLVMGNKMEMHPVTTIL 336

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            L+G     GL G+  G  + A++ +I        +   E
Sbjct: 337 LLIGASSVWGLWGVIFGIPIYAILKIIVSRVYNYYRRESE 376


>gi|319440952|ref|ZP_07990108.1| hypothetical protein CvarD4_04205 [Corynebacterium variabile DSM
           44702]
          Length = 503

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/337 (13%), Positives = 114/337 (33%), Gaps = 18/337 (5%)

Query: 12  MRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +R++++      L+     L     P++ ++I+    WP+          +     + + 
Sbjct: 117 LRFLVIAAAGYILWIGSAKLWAGILPIILSIIVCTVLWPLSRQLRKWHFPNP-LAVLTSL 175

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +    +F   +  +    + +  ELV K     Q    +  W++  P  + + ++     
Sbjct: 176 LVFFGVFAGIIAAIVPSVVDQAGELVDKGTEGVQK---IQDWVAGPPLELQSDQIDNAID 232

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                L+  ++   +T         ++   ++ +               F +DG      
Sbjct: 233 QATNRLQDSTDQITQTAVAGVSAVTSAIVTLVVVLVLTFF---------FLKDGEKFLPM 283

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  +       +  +        +        I++  +   +G   ++ GVP    L +I
Sbjct: 284 VRRVTGRRVGWHITEALTRCWNTLGGFIRTQAIVSFIDAFFIGLGLFILGVPLAGPLAII 343

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T     IP     +  A+S+ + + G +   A  + L       +    L P L    + 
Sbjct: 344 TFFAGFIPIVGAFTAGALSVLVALVGNDFTTALIVLLIVIAVQQLEGNVLSPVLQSRAMN 403

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L  +     +  G    G++G F+   + A+IA I +
Sbjct: 404 LHPVVVLLSVTVGGGLWGIIGAFLAVPVAAMIAEILR 440


>gi|150400408|ref|YP_001324175.1| hypothetical protein Mevan_1671 [Methanococcus vannielii SB]
 gi|150013111|gb|ABR55563.1| protein of unknown function UPF0118 [Methanococcus vannielii SB]
          Length = 334

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 64/335 (19%), Positives = 137/335 (40%), Gaps = 21/335 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           + R +++F +   LY L  F + V  A+ + + + P+Y++   K              + 
Sbjct: 9   LKRLLMLFSVFALLYMLWPFVSIVSIAIAVAYMAKPLYNNLWPKLGR------TYGAFTC 62

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +   +VP++ L    + ++   +  + +       +  +L+++       +L    +S  
Sbjct: 63  LLGIVVPMILLVLLVIKDVVFFLVSLDVRI-----MVDFLTNVVSHFEFLQLNESDISKI 117

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            S        +  +    I    S    + L + L+  F         +DG+ I     S
Sbjct: 118 VSELWKLSKPILDSIASQISAIPSLMMKLLLLFFLTFYF--------LKDGYKIKDIFLS 169

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                   +   + R V    +  F+G  + ++  G++    Y L GVP+ + LG ++ I
Sbjct: 170 YVPEDRKEHATLVIREVHAAFKILFIGNAVTSLCVGIISIIGYSLMGVPNSITLGALSGI 229

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIKLP 308
           + ++P  G    +  ++IY L+ G+I  +  + L+G I L +  D  +RP +V     L 
Sbjct: 230 LNILPVVGGWTIYFPLTIYYLLIGDITKSILILLFGIIFLSLAPDFAIRPKIVAKSSDLH 289

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            +      + G    G+ GL IGP+++  +  + K
Sbjct: 290 PVLVLIAFLVGPLAFGISGLAIGPIIVGTVYAVHK 324


>gi|86149982|ref|ZP_01068210.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|86152766|ref|ZP_01070971.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|88596022|ref|ZP_01099259.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|121612486|ref|YP_001001021.1| hypothetical protein CJJ81176_1365 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167005924|ref|ZP_02271682.1| hypothetical protein Cjejjejuni_07165 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|218562972|ref|YP_002344751.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|85839428|gb|EAQ56689.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|85843651|gb|EAQ60861.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87249909|gb|EAQ72868.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|88190863|gb|EAQ94835.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112360678|emb|CAL35475.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|284926583|gb|ADC28935.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315929282|gb|EFV08495.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           305]
          Length = 347

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 65/329 (19%), Positives = 130/329 (39%), Gaps = 23/329 (6%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           ++ A ++   +  I + F++  +      +++ T  ++ LF  P ++        +K   
Sbjct: 30  IIIASLMAVATSNINAKFLNLTKGHKFLASILTTTCMVLLFFAPFVYAMIELAKALKNF- 88

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             + L  Q    V  +   +P      E   K       L  +S+  L          +A
Sbjct: 89  -DINLVTQTLDYVKNYQFTLPESFNFLEPKIKEFLASIDLNSISKQIL---------SYA 138

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
           S F      + + ++ + +  FF    G  +   L S+   +       +   V  V+  
Sbjct: 139 SSFTKSGAKFLIDMVLICVFYFFANLYGTELVIYLKSIIP-IDKKELDDVLSEVGNVMAV 197

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIK 272
               M I+AI +G + G      G    + +GVI A+ ++IP  G  + +  VS+Y    
Sbjct: 198 VLYSMVIVAIFQGALFGLITIFYGYDG-ILMGVIFAVSSLIPAIGGALIYMPVSLYEFAS 256

Query: 273 GNIFNATCLFLWGAIEL-FIVDKTLRPF--------LVGGPIKLPFLPTFFGLVGGVRTM 323
            N+ +A  +F++  I + FI D  ++P         LV  P K+  L  F  ++ G+ T 
Sbjct: 257 NNLNSALVIFIYSVIVISFIADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTF 316

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           G  G+ +GP ++       +  ++   +N
Sbjct: 317 GFWGIILGPAILTFFVSTLRMYVILKDKN 345


>gi|227540838|ref|ZP_03970887.1| integral membrane protein [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227183370|gb|EEI64342.1| integral membrane protein [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 460

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 16/302 (5%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P+L A+++    WP        K         ++ +  +  F+     +         
Sbjct: 91  ILPILIAVLLCTVLWPPTKWMKDHK-----IPITLSVILTLLGFVAIFSAVVAAIAPTFS 145

Query: 91  ELVSKVVLANQHGI-PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
               ++  + + G+  +  W+   P    A ++          L+  +           I
Sbjct: 146 TQGKRLFESGKEGVYQLGDWIQGPPLNAQAEQVDQVIDEVFGWLQDQASN---------I 196

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                          ++    +I  FFF +DG  +   +  +       +  ++      
Sbjct: 197 ASGVFSGLSAASSALVTFGVAVILSFFFLKDGSKLLPTIRGVVGQNVGWHLSEVLTRTWN 256

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIY 268
            +         ++  + +++G   W+  VP  +AL VIT     IP  GA  +     + 
Sbjct: 257 TLGGYIRAQAAVSAIDAVIIGLGLWILKVPMALALAVITFFAGFIPIVGAFSAGALAVLI 316

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
            L+ G +  A    +   +   +    L P L    + L  +     +  G    G++G 
Sbjct: 317 ALVDGGLKTAIFALILIVLVQQLEGNILSPMLQSKAMDLHPVVVLLSVTVGGGLFGIIGA 376

Query: 329 FI 330
           F+
Sbjct: 377 FL 378


>gi|227489249|ref|ZP_03919565.1| integral membrane protein [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227090780|gb|EEI26092.1| integral membrane protein [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 460

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 16/302 (5%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P+L A+++    WP        K         ++ +  +  F+     +         
Sbjct: 91  ILPILIAVLLCTVLWPPTKWMKDHK-----IPITLSVILTLLGFVAIFSAVVAAIAPTFS 145

Query: 91  ELVSKVVLANQHGI-PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
               ++  + + G+  +  W+   P    A ++          L+  +           I
Sbjct: 146 TQGKRLFESGKEGVYQLGDWIQGPPLNAQAEQVDQVIDEVFGWLQDQASN---------I 196

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                          ++    +I  FFF +DG  +   +  +       +  ++      
Sbjct: 197 ASGVFSGLSAASSALVTFGVAVILSFFFLKDGSKLLPTIRGVVGQNVGWHLSEVLTRTWN 256

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIY 268
            +         ++  + +++G   W+  VP  +AL VIT     IP  GA  +     + 
Sbjct: 257 TLGGYIRAQAAVSAIDAVIIGLGLWILKVPMALALAVITFFAGFIPIVGAFSAGALAVLI 316

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
            L+ G +  A    +   +   +    L P L    + L  +     +  G    G++G 
Sbjct: 317 ALVDGGLKTAIFALILIVLVQQLEGNILSPMLQSKAMDLHPVVVLLSVTVGGGLFGIIGA 376

Query: 329 FI 330
           F+
Sbjct: 377 FL 378


>gi|289446691|ref|ZP_06436435.1| conserved membrane protein [Mycobacterium tuberculosis CPHL_A]
 gi|289419649|gb|EFD16850.1| conserved membrane protein [Mycobacterium tuberculosis CPHL_A]
          Length = 311

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 96/277 (34%), Gaps = 5/277 (1%)

Query: 77  PLLFLFYYGMLEMKELVSKVVLA--NQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           P+  L    ++++  +V  V           +   +     G++    +        +L+
Sbjct: 2   PVGALVGLAIVQIARMVDSVADWVRTTDLSTLGDKILQFVNGLFDRVPFLHITVTADALR 61

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
               +  +  G   +  F             S I  +        +   +   +  L   
Sbjct: 62  KAMISVAQNVGEWLLH-FLRDAAGSLAGVITSAIIFVYVFVALLVNREKLRTLIGQLNP- 119

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA-LGVITAIMAM 253
           L         + +  ++R T  G  +IA  +G+   ++ ++AG         ++   +++
Sbjct: 120 LGEDVTDLYLQKMGSMVRGTVNGQFVIAACQGVAGAASIYIAGFHHGFFIFAIVLTALSI 179

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP G  I      I ++  GNI     + LW  + +  +D  LRP LV    +L      
Sbjct: 180 IPLGGGIVTIPFGIGMIFYGNIAGGIFVLLWHLLVVTNIDNVLRPILVPRDARLNSALML 239

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             +  G+   G  G+ IGPVLM LI       +   K
Sbjct: 240 LSVFAGITMFGPWGIIIGPVLMILIVTTIDVYLAVYK 276


>gi|41614957|ref|NP_963455.1| hypothetical protein NEQ162 [Nanoarchaeum equitans Kin4-M]
 gi|40068681|gb|AAR39016.1| NEQ162 [Nanoarchaeum equitans Kin4-M]
          Length = 327

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/331 (14%), Positives = 121/331 (36%), Gaps = 32/331 (9%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  ++  ++++  + L  F   + +  +I +  WP+Y        +     A+   + + 
Sbjct: 4   ILILLAVVLIIVFFILLPFIPYIATGAVIAYFLWPLYKRLSKFVPKR--IAALGLIIVLG 61

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +      +      +E+ + +  ++        V ++L                     
Sbjct: 62  LIIGATTYYSSLVLYVELSKYLPTIIKQYSSNQMVGKYL--------------------- 100

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                    +       I  +A+    +  D  L I   +++ ++F  DG      + + 
Sbjct: 101 -------PIVLQKLYPTILDYATSLIKLLPDMFLGIFIAMLSAYYFLLDGQKAIDYIINW 153

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                     +I       + +  +G    A+ + +V    + +  +   + L ++  I+
Sbjct: 154 IAESKEDR-NQIINTTKSYLDAVIIGTIFGALAQAVVSYIGFLILNIKLALVLSILVFIV 212

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           A++P  G  + +  +++Y  ++ NI       ++G   + ++D  +R F V     +  L
Sbjct: 213 AILPIVGPSMIWVLLALYYFMQNNISFTIFSLVYGLFVVGLIDNIVRMFTVSSKADIHPL 272

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                ++GG   MG  GLF+GPVL+ L   +
Sbjct: 273 LAALSMIGGSILMGFAGLFLGPVLVGLALSL 303


>gi|255325572|ref|ZP_05366672.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
           SK141]
 gi|255297360|gb|EET76677.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
           SK141]
          Length = 457

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 59/344 (17%), Positives = 129/344 (37%), Gaps = 22/344 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFA--------PVLSALIIGFTSWPIYSSFISKKEESST 60
           + + +  ++FI++V+   L G+          PVL A+++    +PI +   SK     +
Sbjct: 70  RTMAKVSVVFILIVAGLALAGYLLKFIWVGLLPVLLAILVSTVLYPISAWLRSK-GFPRS 128

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             AV   + ++ +F      +      + + L+ +          +   +   P  + + 
Sbjct: 129 LAAVSTLLGLIIIFCGVFAAMAPVVTSQSQTLIDQAEDGIN---QITEMVEKSPIDIQSD 185

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +L        QS+      F K           S F  +     ++ + M+   FF  +D
Sbjct: 186 QL--------QSVLQDVVKFAKGQASTIATGVISGF-SMASSIVVAALIMLFVTFFIIKD 236

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G      L     +    +  ++   + K +         +A+ + +++G   W+  VP 
Sbjct: 237 GDKFLPWLRKYTGNSTGWHVTELGARIWKTLSGFIQAQAAVAMVDAVLIGLGLWVLQVPL 296

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            + + V+T   + IP    ++  A++I + L+   + NA        I   +    L+P 
Sbjct: 297 ALVIAVVTFFASFIPIIGAVTAGALAIIIALVSNGLTNALLALALIIIVQQVEGNVLQPM 356

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L    + L        +  G    G++G F+   + A IAV+ +
Sbjct: 357 LQSKAMGLHAAIVLLSVTVGSTLAGIVGAFLAVPVAATIAVVVR 400


>gi|283954986|ref|ZP_06372493.1| hypothetical protein C414_000350024 [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793484|gb|EFC32246.1| hypothetical protein C414_000350024 [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 347

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 64/329 (19%), Positives = 129/329 (39%), Gaps = 23/329 (6%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           ++ A ++   +  I + F++  +      +++ T  ++ LF  P ++         K   
Sbjct: 30  IIIASLMAVATSNINAKFLNLTKGHKFLASILTTACMVLLFFTPFVYTMIELAKASKNF- 88

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             + L  Q    V  +   +P          K       L  +S+  L          +A
Sbjct: 89  -DINLVTQTLDYVKNYQFTLPESFNFLYPKIKEFLASIDLNSISKQIL---------SYA 138

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
           S F      + + ++ + +  FF    G  +   L S+   +       +   V  V+  
Sbjct: 139 SSFTKSGAKFLVDMVLICVFYFFANLYGTELVIYLKSIIP-IDKKELDDVLSEVGNVMAV 197

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIK 272
               M I+AI +G + G      G    + +GVI A+ ++IP  G  + +  VS+Y    
Sbjct: 198 VLYSMVIVAIFQGTLFGLITMFYGYDG-ILMGVIFAVSSLIPAIGGALIYVPVSLYEFAS 256

Query: 273 GNIFNATCLFLWGAIEL-FIVDKTLRPF--------LVGGPIKLPFLPTFFGLVGGVRTM 323
            N+ +A  +F++  I + FI D  ++P         LV  P K+  L  F  ++ G+ T 
Sbjct: 257 NNLNSALVIFIYSVIVISFIADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTF 316

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           G  G+ +GP ++       +  ++  ++N
Sbjct: 317 GFWGIILGPAILTFFVSTLRMYMILKEKN 345


>gi|57238407|ref|YP_179538.1| hypothetical protein CJE1555 [Campylobacter jejuni RM1221]
 gi|148926718|ref|ZP_01810398.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni CG8486]
 gi|57167211|gb|AAW35990.1| membrane protein, putative [Campylobacter jejuni RM1221]
 gi|145845082|gb|EDK22178.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni CG8486]
 gi|315058837|gb|ADT73166.1| Acid membrane antigen A [Campylobacter jejuni subsp. jejuni S3]
          Length = 347

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 65/329 (19%), Positives = 130/329 (39%), Gaps = 23/329 (6%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           ++ A ++   +  I + F++  +      +++ T  ++ LF  P ++        +K   
Sbjct: 30  IIIASLMAVATSNINAKFLNLTKGHKFLASILTTACMVLLFFAPFVYAMIELAKALKNF- 88

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             + L  Q    V  +   +P      E   K       L  +S+  L          +A
Sbjct: 89  -DINLVTQTLDYVKNYQFTLPESFNFLEPKIKEFLASIDLNSISKQIL---------SYA 138

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
           S F      + + ++ + +  FF    G  +   L S+   +       +   V  V+  
Sbjct: 139 SSFTKSGAKFLIDMVLICVFYFFANLYGTELVIYLKSIIP-IDKKELDDVLSEVGNVMAV 197

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIK 272
               M I+AI +G + G      G    + +GVI A+ ++IP  G  + +  VS+Y    
Sbjct: 198 VLYSMVIVAIFQGALFGLITIFYGYDG-ILMGVIFAVSSLIPAIGGALIYVPVSLYEFAS 256

Query: 273 GNIFNATCLFLWGAIEL-FIVDKTLRPF--------LVGGPIKLPFLPTFFGLVGGVRTM 323
            N+ +A  +F++  I + FI D  ++P         LV  P K+  L  F  ++ G+ T 
Sbjct: 257 NNLNSALVIFIYSVIVISFIADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTF 316

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           G  G+ +GP ++       +  ++   +N
Sbjct: 317 GFWGIILGPAILTFFVSTLRMYVILKDKN 345


>gi|293189386|ref|ZP_06608109.1| putative permease [Actinomyces odontolyticus F0309]
 gi|292821849|gb|EFF80785.1| putative permease [Actinomyces odontolyticus F0309]
          Length = 458

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/329 (16%), Positives = 107/329 (32%), Gaps = 9/329 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           ++  +L  +  L     PV  AL +     P+ S    +    S+  A +  +    +  
Sbjct: 38  LVLAVLWGIARLTIVIMPVAIALTVAVLLEPLVSWMRRRLHFPSSLAATVGLLVFFAVVA 97

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVP---RWLSDIPGGMWASELWTKHLSHPQS 132
             L       + ++ +L S+     +  +       +L D P  +  + L          
Sbjct: 98  GALSQAAAELIQQVPQLASEAADGFRKLLDAIVHNEFLQDGPLKIDTTVLTAAAEQLRSE 157

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           L          +  + +   A            S + M+  LFFF ++G SI      L 
Sbjct: 158 LVNWL-----NSNKETLATGALSITSSVGTLATSGLTMLFCLFFFLKEGRSIWLWCVRLL 212

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                    + +        S       +A  + + +    +  GVP  + +GVIT   A
Sbjct: 213 PAPARVPVHESAIRGWATFGSYVRTQIQVAAIDAIGIALGAFFLGVPLAIPIGVITFFAA 272

Query: 253 MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +P  GA  S     +   + G +  A  + +   +   +    L+PF++   + L  + 
Sbjct: 273 FVPILGALTSGVIAVLVAAVNGGLTKAIIMLVIILVVQQVESNILQPFMMSNAVSLHPVA 332

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
               +  G    G+ G      + A I  
Sbjct: 333 VMLVITAGSAIAGIAGAVFSVPIAAFINA 361


>gi|311740449|ref|ZP_07714277.1| integral membrane protein [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311304495|gb|EFQ80570.1| integral membrane protein [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 457

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/344 (16%), Positives = 129/344 (37%), Gaps = 22/344 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFA--------PVLSALIIGFTSWPIYSSFISKKEESST 60
           + + +  ++FI++V+   L G+          PVL A+++    +PI +   +K     +
Sbjct: 70  RTMAKVSVIFILIVAGLALAGYLLKFIWVGLLPVLLAILVSTVLYPISAWLRAK-GFPRS 128

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             AV   + ++ +F      +      + + L+++          +   +   P  + + 
Sbjct: 129 LAAVSTLLGLIIVFCGVFAAMAPVVTSQSQTLINQAEDGIN---QITEMVEKSPIDIQSD 185

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +L        QS+      F K           S F  +     ++ + M+   FF  +D
Sbjct: 186 QL--------QSVLEDVVKFAKGQASTIATGVISGF-SMASSIVVAALIMLFVTFFIIKD 236

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G      L     +    +  ++   + K +         +A+ + +++G   W+  VP 
Sbjct: 237 GDKFLPWLRKYTGNSTGWHVTELGARIWKTLSGFIQAQAAVAMVDAVLIGLGLWVLQVPL 296

Query: 241 HVALGVITAIMAMIPGGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            + + V+T   + IP    ++  A++ I  L+   + NA        I   +    L+P 
Sbjct: 297 ALVIAVVTFFASFIPIIGAVTAGALAVIIALVSNGLTNALLALALIIIVQQVEGNVLQPM 356

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L    + L        +  G    G++G F+   + A IAV+ +
Sbjct: 357 LQSKAMGLHAAVVLLSVTVGSTLAGIVGAFLAVPVAATIAVVVR 400


>gi|328461853|gb|EGF34075.1| putative permease [Lactobacillus helveticus MTCC 5463]
          Length = 350

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/330 (16%), Positives = 117/330 (35%), Gaps = 6/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
                  P+L A+I  +   P+   F  K +       ++  + V+   I  +  L    
Sbjct: 3   IFSAILPPLLLAVIQYYVMNPVVDWFEKKFKVPRVVTILVLFLFVLIALIWIINILVPIA 62

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++  L+          +   +     P            + + Q     S        
Sbjct: 63  QNQINSLIKNWPNIWNDAVNATQEALRDPRLHEVKGSLQNMIDNTQKTLFKSGQSTINAT 122

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           I  I    S   MI     ++++     LFF  +DG  +   +       + + + ++  
Sbjct: 123 IGNISSAVSIITMI----VMTLLTAPFILFFMLKDGHQLRPYITKFAPEHWQSSFSQLLY 178

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTA 264
            +   + S   G   +A   G++    Y + G+P  +AL ++   M +IP  G P++   
Sbjct: 179 DINYALASYIRGQITVAFWVGVMFVVGYMIIGLPYGLALAILAGFMNLIPYFGTPLALIP 238

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           V +  ++         + +   IE  I  + L P ++G  +++  + T   L+G     G
Sbjct: 239 VFVIAIMTSGSMI-IKVLVVFLIEQAIETRILSPLVMGNKMEMHPVTTILLLIGASSVWG 297

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L G+F G  + A++ +I        +   E
Sbjct: 298 LWGVFFGIPIYAILKIIVSRVYNYYRRESE 327


>gi|58336979|ref|YP_193564.1| permease [Lactobacillus acidophilus NCFM]
 gi|227903538|ref|ZP_04021343.1| permease [Lactobacillus acidophilus ATCC 4796]
 gi|58254296|gb|AAV42533.1| putative permease [Lactobacillus acidophilus NCFM]
 gi|227868425|gb|EEJ75846.1| permease [Lactobacillus acidophilus ATCC 4796]
          Length = 395

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 53/314 (16%), Positives = 110/314 (35%), Gaps = 6/314 (1%)

Query: 42  FTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ 101
           +   P+   F  K         ++  + V+   I  +  L      ++  LV        
Sbjct: 67  YIMNPVVDWFEKKFRVPRVLTIIVLFLFVVIAMIWIINILVPIAQHQINSLVKNWPHIWN 126

Query: 102 HGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL 161
             +   +     P            +   Q     S      + +  I    S   MI  
Sbjct: 127 DAVNATQNALRDPRLHSVKGSIQGMIDDTQKTLFKSGQNTVNSTLGNISSAVSIITMI-- 184

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
              ++++     LFF  +DG  +   +       +   + K+   +   + S   G   +
Sbjct: 185 --VMTLLTAPFILFFMLKDGHQLRPYITKFVPETWQQSFSKLLYDINYAVASYIRGQITV 242

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATC 280
           A   G++    Y + G+P  +AL ++   M +IP  G P++   V +  ++         
Sbjct: 243 AFWVGVMFTIGYIIIGLPYGLALAILAGFMNLIPYFGTPLALIPVIVISIMTSGSMLVKV 302

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           L ++ AIE  I  + L P ++G  +++  + T   L+G     GL G+  G  + A++ +
Sbjct: 303 LIVF-AIEQTIETRILSPLVMGNKMQMHPVTTILLLIGASSVWGLWGVIFGIPIYAVLKI 361

Query: 341 IWKESIMAIKENKE 354
           I        +   +
Sbjct: 362 IVSRVYNYYRRESD 375


>gi|227832774|ref|YP_002834481.1| transporter of the putative permease family [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262182735|ref|ZP_06042156.1| transporter of the putative permease family protein
           [Corynebacterium aurimucosum ATCC 700975]
 gi|227453790|gb|ACP32543.1| transporter of the putative permease family [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 497

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 64/334 (19%), Positives = 118/334 (35%), Gaps = 17/334 (5%)

Query: 14  WMIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +I   +  S   L  F     PVL ALII     PI +S + +K   S   A +  +  
Sbjct: 68  TIIGIFLYASFRMLGNFWRGILPVLIALIICTVLAPI-ASAMRRKGLPSALAAAVTILVS 126

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
                   +F+      + + L  + V   Q    +  W    P  + A E+        
Sbjct: 127 FTAVGALFMFIAPDFARQSQTLYLQTVEGIQR---LQLWAQGPPLNLDADEI-------- 175

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                    +L+           +  G       +++  +++  FFF +DG +    L  
Sbjct: 176 GGYIDEIALWLQRQAGSIAGSVFTGIGTAT-SIVVTLFIIVVLTFFFLKDGHNFLPWLRQ 234

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                   +  ++   V   +        +++  + + +G    L GVP  +AL +IT I
Sbjct: 235 ATGRRTGWHLTELLTRVWSTLGGFVRAQAVVSAVDAVFIGLGLALIGVPLAMALAIITFI 294

Query: 251 MAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
              IP    I   A+S+ + L+      A  +     +   +    L P+L    + L  
Sbjct: 295 AGFIPFVGAIVAGALSVTIALVSLGFTKALLVLGLVLLVQQLEGNVLSPWLQSKAMNLHP 354

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +     +  G    GL+G F+     A IAV+++
Sbjct: 355 VIVLISVTVGSALFGLIGGFLAVPAAATIAVVYR 388


>gi|77164922|ref|YP_343447.1| hypothetical protein Noc_1428 [Nitrosococcus oceani ATCC 19707]
 gi|76883236|gb|ABA57917.1| Protein of unknown function UPF0118 [Nitrosococcus oceani ATCC
           19707]
          Length = 547

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 55/312 (17%), Positives = 108/312 (34%), Gaps = 10/312 (3%)

Query: 5   MLNPQGIMRWMIMFII-LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           M   + +  W+I F++ L+S+Y L+    P ++ +++ +   P+      K   S T   
Sbjct: 1   MSARRQLRFWLIGFLLFLISVYLLREILLPFVAGMVVAYLIDPLCDWLERK-GCSRTAAT 59

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            + T   + +  + LL L      E+  L+  +              S  P      E W
Sbjct: 60  SLVTAGFILVVSMVLLLLVPLLRSEIVHLIETLPSLIARAQD-----STWPWLQLLQERW 114

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
           +  +S  Q+        L       +    S  G+   +    +  M +  F+  RD   
Sbjct: 115 SIDMSQIQNAAKDQAGILIKWIGKTVGTILSS-GLALANLLSLVFIMPVVAFYLLRDWDK 173

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  Q+DSL         ++  +++  V+     G   + +  G        L G+   + 
Sbjct: 174 LIAQIDSLLPRKHAPVIREQVKLIDTVLSGFIRGQVSVCLLLGTFYAVGLALIGLDFGLM 233

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--DKTLRPFLV 301
           +G++  +++ IP    I      I L             + G   +  V     L P LV
Sbjct: 234 VGMLAGLLSFIPYVGTIVGFIAGIGLAFVQFSEWTPIFLVAGVFVIGQVVEGNVLTPRLV 293

Query: 302 GGPIKLPFLPTF 313
           G  + L  +   
Sbjct: 294 GNRVGLHPVMVI 305


>gi|240103708|ref|YP_002960017.1| hypothetical protein TGAM_1651 [Thermococcus gammatolerans EJ3]
 gi|239911262|gb|ACS34153.1| Conserved hypothetical protein [Thermococcus gammatolerans EJ3]
          Length = 333

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 58/356 (16%), Positives = 131/356 (36%), Gaps = 28/356 (7%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M N   I   + + I+ +    +    +P++ AL + + ++P++   + K        A 
Sbjct: 1   MRNETLIWAIVTVVILYLVWLVVSPVVSPIILALAVAYVTYPLHEKLLPKIGRRK--AAF 58

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           + T  +  L  + L+    +      ++V                       M  S  W 
Sbjct: 59  LLTAIIAVLSFLFLIGFVLWINDVKYQIVRY---------------------MEISFTWL 97

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           + ++          T +       I  +   +        L I  M+   +    +   I
Sbjct: 98  QSVTVSSQRINEVLTAITEGVRSRIESYIVSYTYSIPKLALEIFVMLFVYYGALVNAEEI 157

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV---PSH 241
            ++L +L       +  ++       + +       +++ +G      +W  G+      
Sbjct: 158 GRELYNLLPPQRKEFGIRLIEAARYTLDTLLKSWLTLSVLKGFATALGFWAFGIAPTSGA 217

Query: 242 VALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPF 299
           +ALG++TA + ++P  G  + +    +YL+   N   A    ++  + +  + D  L P 
Sbjct: 218 IALGILTAFVELLPFLGGWLIWIPGVVYLIHSSNYVLAFLFAVYSIVFVSPLPDFVLAPK 277

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +      L  L +  G+ GG+   GL+G+ IGPV + L+A + +E   A++    +
Sbjct: 278 MTLRRRGLNALISLLGIFGGLWAFGLVGIIIGPVSLGLLATVIEEWKKAMESQPAE 333


>gi|323466958|gb|ADX70645.1| Permease [Lactobacillus helveticus H10]
          Length = 369

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 59/340 (17%), Positives = 123/340 (36%), Gaps = 6/340 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F++  +  F      P+L A+I  +   P+   F  K +       ++  + V+   I
Sbjct: 12  ISFVLNPAWVFFSAILPPLLLAVIQYYVMNPVVDWFEKKFKVPRVVTILVLFLFVLIALI 71

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +  L      ++  L+          +   +     P            + + Q    
Sbjct: 72  WIINILVPIAQNQINSLIKNWPNIWNDAVNATQEALRDPRLHEVKGSLQNMIDNTQKTLF 131

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S        I  I    S   MI     ++++     LFF  +DG  +   +       
Sbjct: 132 KSGQSTINATIGNISSAVSIITMI----VMTLLTAPFILFFMLKDGHQLRPYITKFAPEH 187

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           + + + ++   +   + S   G   +A   G++    Y + G+P  +AL ++   M +IP
Sbjct: 188 WQSSFSQLLYDINYALASYIRGQITVAFWVGVMFVVGYMIIGLPYGLALAILAGFMNLIP 247

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G P++   V +  ++         + +   IE  I  + L P ++G  +++  + T  
Sbjct: 248 YFGTPLALIPVFVIAIMTSG-SMVIKVLVVFLIEQAIETRILSPLVMGNKMEMHPVTTIL 306

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            L+G     GL G+F G  + A++ +I        +   E
Sbjct: 307 LLIGASSVWGLWGVFFGIPIYAILKIIVSRVYNYYRRESE 346


>gi|260664188|ref|ZP_05865041.1| permease [Lactobacillus jensenii SJ-7A-US]
 gi|260562074|gb|EEX28043.1| permease [Lactobacillus jensenii SJ-7A-US]
          Length = 395

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 60/310 (19%), Positives = 115/310 (37%), Gaps = 6/310 (1%)

Query: 42  FTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ 101
           +   PI   F  K +   T   ++  + V+   I  +  L      ++  L+        
Sbjct: 62  YMMNPIVDFFEQKLKVPRTVTILVLFLLVLGALIWIINSLLPIIQNQVDALIKNWPNIWD 121

Query: 102 HGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL 161
             +   + L   P            +   +     S     T  +  I    S   MIF 
Sbjct: 122 TSVKTIQNLLHDPHLKGVKSNINSVIDSIEKTLFKSWQDTGTAALTNISSAVSVITMIF- 180

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
              ++++     LF+  +DG  ++  L       +   + ++   + + I +   G   +
Sbjct: 181 ---MTLLTAPFVLFYMLKDGHQLNGYLTKFAPRRWQDSFSRLLHDINEAISAYIRGQITV 237

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATC 280
           A+  G++    Y + G+P   AL V+ A M +IP  G  I+   V I   I  +      
Sbjct: 238 AVWVGIIYAIGYNIIGLPYGSALAVLAAFMLLIPYFGTFIALIPVLIIASIT-SWGMLIN 296

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           + +  AIE  I  + + P +VG  +K+  + T   L+G     GL G+  G  + A++ +
Sbjct: 297 VLIVFAIEQTIETRFISPIIVGNKMKMHPITTILLLIGASAVWGLWGVIFGIPIYAVVKI 356

Query: 341 IWKESIMAIK 350
           +   S    K
Sbjct: 357 VVSRSFNYFK 366


>gi|154507713|ref|ZP_02043355.1| hypothetical protein ACTODO_00194 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797347|gb|EDN79767.1| hypothetical protein ACTODO_00194 [Actinomyces odontolyticus ATCC
           17982]
          Length = 494

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 56/329 (17%), Positives = 104/329 (31%), Gaps = 9/329 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           ++  +L  +  L     PV  AL +     P+ S    +    S+  A +  +       
Sbjct: 74  LVMAVLWGIARLTIVIMPVAIALTVTVLLEPLVSWMRRRLHFPSSLAATVGLLVFFAAVA 133

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVP---RWLSDIPGGMWASELWTKHLSHPQS 132
             L       + ++  L S+     +  +       +L D P  M  + L          
Sbjct: 134 GALSQAAAELIQQVPYLASQAADGFRKLLDAIAHNEFLHDGPLKMDTTVLTNAAEQLRSE 193

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           L             + +   A            S + M+  LFFF ++G SI      L 
Sbjct: 194 LVNWL-----NTNKETLATGALNITSSVGTLATSALTMLFCLFFFLKEGRSIWLWCVRLL 248

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                    + +        S       +A  + L +    +  GVP  + +GVIT   A
Sbjct: 249 PAPARVPVHESAIRGWATFGSYVRTQIQVAAIDALGIALGAFFLGVPLAIPIGVITFFAA 308

Query: 253 MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +P  GA  S     +   + G +  A  + +   +   +    L+PF++   + L  + 
Sbjct: 309 FVPILGALTSGVIAVLVAAVNGGLTKAIIMLVIILVVQQVESNILQPFMMSNAVSLHPVA 368

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
               +  G    G+ G      + A I  
Sbjct: 369 VMLVITAGSAIAGIAGAIFSVPIAAFINA 397


>gi|15639542|ref|NP_218992.1| hypothetical protein TP0553 [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025781|ref|YP_001933553.1| hypothetical protein TPASS_0553 [Treponema pallidum subsp. pallidum
           SS14]
 gi|8928462|sp|O83564|Y553_TREPA RecName: Full=UPF0118 membrane protein TP_0553
 gi|3322847|gb|AAC26557.1| conserved hypothetical integral membrane protein [Treponema
           pallidum subsp. pallidum str. Nichols]
 gi|189018356|gb|ACD70974.1| hypothetical integral membrane protein [Treponema pallidum subsp.
           pallidum SS14]
 gi|291059930|gb|ADD72665.1| membrane protein [Treponema pallidum subsp. pallidum str. Chicago]
 gi|311359268|gb|ADP94169.1| conserved hypothetical membrane protein [Treponema pallidum subsp.
           pertenue]
 gi|311705159|gb|ADQ01048.1| conserved hypothetical membrane protein [Treponema pallidum subsp.
           pertenue]
 gi|311705167|gb|ADQ01055.1| conserved hypothetical membrane protein [Treponema pallidum subsp.
           pertenue str. Gauthier]
 gi|313505080|gb|ADR64248.1| conserved hypothetical membrane protein [Treponema pallidum]
 gi|313505088|gb|ADR64255.1| conserved hypothetical membrane protein [Treponema pallidum subsp.
           pallidum str. Mexico A]
 gi|313505096|gb|ADR64262.1| conserved hypothetical membrane protein [Treponema pallidum subsp.
           pallidum]
          Length = 403

 Score =  109 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 63/370 (17%), Positives = 127/370 (34%), Gaps = 33/370 (8%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES--- 58
           +++      +   + +  +LV + F+  +   +L + I+     P Y +  ++ +     
Sbjct: 3   KQSPAQTISLFVLLALMFVLVCMLFV-PYLTVLLWSSILAILLSPCYRALCARIDMHAFT 61

Query: 59  --------------------------STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
                                        LA + ++ +  L      F+      + K L
Sbjct: 62  RTRHLVSHMNGEDGCTAAITRATRFQKKMLAAVFSLVITLLVTTVFFFIAISLFGQGKLL 121

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
             K+ L  +               +              +++     F   +       +
Sbjct: 122 FDKLSLFFREYDLFEGAKQRSFTALIFKLSRGTVDISTLNVEEHLLRFFGKHVESVFV-Y 180

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
              F        LS +F    L+FF+ DG  +S  L +    L      ++     +  R
Sbjct: 181 TQIFVKNIARAALSTLFFSFTLYFFFLDGEHLSCLLIAALP-LRKRASAQLLEKCKEATR 239

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLI 271
             F G+  IA  +  V    Y +  V   +AL ++T   + +P  G    +  V I +  
Sbjct: 240 HLFKGLFSIAFYQTCVAFVFYGIFRVEGPMALAMLTFFASFLPLVGCACVWLPVGISIGF 299

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
                  T         + I+D  LRP L+   +++  L  FF ++GGV+T G  G+ +G
Sbjct: 300 TSGWMRGTLFLFVAGSSITIIDSFLRPLLLQNKMRIHPLLIFFSMLGGVQTFGFNGMVLG 359

Query: 332 PVLMALIAVI 341
           P+L+ L+  +
Sbjct: 360 PILVILLFTV 369


>gi|227501979|ref|ZP_03932028.1| integral membrane protein [Corynebacterium accolens ATCC 49725]
 gi|227077263|gb|EEI15226.1| integral membrane protein [Corynebacterium accolens ATCC 49725]
          Length = 477

 Score =  109 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 56/344 (16%), Positives = 125/344 (36%), Gaps = 22/344 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLS--------ALIIGFTSWPIYSSFISKKEESST 60
           + + +  + FI++ +   L GF    +         A+++    +P+ +          T
Sbjct: 81  RSMAKISVCFILIAAGLGLAGFLLRFIWVGLLPVILAILVSTVLYPVTAWL-RSVGFPRT 139

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             AV   + ++ +F      +      + K L+++        + + + ++D P  +   
Sbjct: 140 LAAVTTLLGLVVIFGGIFAAMAPMVTAQSKVLINEAEAGI---MQLTKMVNDSPLDIEVD 196

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +L        QS+     +F K      I         +     ++ + M+   FF  +D
Sbjct: 197 QL--------QSVFQDIVSFAKGQAST-IATGVLSGVSMASSIAVATVIMLFITFFIIKD 247

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G      L     +    +  +++  + K +        ++A+ + + +G   W   VP 
Sbjct: 248 GDRFLPWLRKYTGNSAAWHITELTSRMWKTLSGFIQAQAVVALVDAVFIGLGLWALQVPL 307

Query: 241 HVALGVITAIMAMIPGGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            + + VIT     IP    ++  A++ I  L+   + NA        I   +    L+P 
Sbjct: 308 ALVIAVITFFAGFIPIIGAVTAGALAVIIALVSNGLTNALLALALIIIVQQVESNVLQPI 367

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L    + L        +  G    G++G F+   + A IAV+ +
Sbjct: 368 LQSRAMGLHAAIVLLSITVGSTLAGIVGAFLAVPVAATIAVVLR 411


>gi|19553991|ref|NP_601993.1| permease [Corynebacterium glutamicum ATCC 13032]
 gi|62391636|ref|YP_227038.1| permease [Corynebacterium glutamicum ATCC 13032]
 gi|41326978|emb|CAF20822.1| Predicted permease [Corynebacterium glutamicum ATCC 13032]
          Length = 476

 Score =  109 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 63/354 (17%), Positives = 124/354 (35%), Gaps = 18/354 (5%)

Query: 11  IMRWMIMFIILVSLYFLKGFF----APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
            +R++++ I  V    + GF      PV+ AL++    WP        K   +    VI 
Sbjct: 89  ALRFIVLVIAGVIALRMLGFIWVGILPVVLALLVCTVLWPPVKWLREHKIP-AALAVVIT 147

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +    L       +      + K++V +  +  +    +  W+   P  +  S+     
Sbjct: 148 ILGFFALIGGVFAAIAPSVSSQTKQVVDQATVGIE---DLMDWVQGPPFNLDISQFEGAL 204

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                 L+  S T         I               +++  M++  FFF +DG     
Sbjct: 205 NDLTSMLQSQSST---------IASGVFSGLSTASSIVVTLAVMLVLTFFFLKDGPRFLP 255

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +          +  ++       +        ++++ + + +G    L GVP  +AL V
Sbjct: 256 WMRGFTGENAGWHLTEVLTRTWNTLAGFIRAQALVSMVDAIFIGIGLLLLGVPMALALAV 315

Query: 247 ITAIMAMIPGGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           IT     IP    +S  A++ I  L+   + NA  + +       I    L PFL    +
Sbjct: 316 ITFFAGFIPIVGAVSAGALAVIIALVTNGVTNALLVLVLILAVQQIEGNILSPFLQSKAM 375

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            L        +  G    G++G F+   + A +AV  +     +     +I+S+
Sbjct: 376 NLHAAVVLLSVTVGSTMFGIIGAFLAVPVAATLAVWVRYHSEMVALRAGEITSD 429


>gi|19552249|ref|NP_600251.1| hypothetical protein NCgl0984 [Corynebacterium glutamicum ATCC
           13032]
          Length = 490

 Score =  109 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 51/338 (15%), Positives = 119/338 (35%), Gaps = 17/338 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFF---APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
            +    +   + +  + +  F+    PV  A+II        S    +K    + ++   
Sbjct: 64  SLRLVFVAAAVFILWWVIGRFWQGVLPVTLAIIICTVLSSPNSWL--RKHGVPSVVSAFI 121

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           T+      +  +L+L    + +  +++          I +  WL   P  + + +L    
Sbjct: 122 TIGTFFAVVGAILWLIAPSIAQQSQVLYFQAFEGILSIQL--WLQGPPLNLDSGDL---- 175

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                     +  +L+           S  G       +++  +++  FFF +DG     
Sbjct: 176 ----SRYFNEAAAWLQNQAGAIAGEIFSGLGAAT-SVIVTLGVVLVLTFFFLKDGHRFLP 230

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
               +G      +  ++       +        +++  + + +G    + GVP  +AL V
Sbjct: 231 WTRKIGGKQAGWHVTELLTRAWTTLSGFVRAQALVSAVDAVFIGIGLLIVGVPMALALSV 290

Query: 247 ITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           IT +   IP     +  A+++ + L+      A  + +       +    L P L    +
Sbjct: 291 ITFVAGFIPIIGAFTAGALAVLVALVSLGFTEAVIVLVIVVAVQQLEGNILSPLLQSKAM 350

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L  +     +  G    G++G F+   + A+IAV ++
Sbjct: 351 NLHPVIVLLSVTVGGTLFGIVGAFLAVPVAAMIAVFFR 388


>gi|62389914|ref|YP_225316.1| hypothetical protein cg1166 [Corynebacterium glutamicum ATCC 13032]
 gi|41325250|emb|CAF19730.1| putative membrane protein [Corynebacterium glutamicum ATCC 13032]
          Length = 493

 Score =  109 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 51/338 (15%), Positives = 119/338 (35%), Gaps = 17/338 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFF---APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
            +    +   + +  + +  F+    PV  A+II        S    +K    + ++   
Sbjct: 67  SLRLVFVAAAVFILWWVIGRFWQGVLPVTLAIIICTVLSSPNSWL--RKHGVPSVVSAFI 124

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           T+      +  +L+L    + +  +++          I +  WL   P  + + +L    
Sbjct: 125 TIGTFFAVVGAILWLIAPSIAQQSQVLYFQAFEGILSIQL--WLQGPPLNLDSGDL---- 178

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                     +  +L+           S  G       +++  +++  FFF +DG     
Sbjct: 179 ----SRYFNEAAAWLQNQAGAIAGEIFSGLGAAT-SVIVTLGVVLVLTFFFLKDGHRFLP 233

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
               +G      +  ++       +        +++  + + +G    + GVP  +AL V
Sbjct: 234 WTRKIGGKQAGWHVTELLTRAWTTLSGFVRAQALVSAVDAVFIGIGLLIVGVPMALALSV 293

Query: 247 ITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           IT +   IP     +  A+++ + L+      A  + +       +    L P L    +
Sbjct: 294 ITFVAGFIPIIGAFTAGALAVLVALVSLGFTEAVIVLVIVVAVQQLEGNILSPLLQSKAM 353

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L  +     +  G    G++G F+   + A+IAV ++
Sbjct: 354 NLHPVIVLLSVTVGGTLFGIVGAFLAVPVAAMIAVFFR 391


>gi|145296788|ref|YP_001139609.1| hypothetical protein cgR_2691 [Corynebacterium glutamicum R]
 gi|140846708|dbj|BAF55707.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 476

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 63/354 (17%), Positives = 123/354 (34%), Gaps = 18/354 (5%)

Query: 11  IMRWMIMFIILVSLYFLKGFF----APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
            +R++++ I  V    + GF      PV+ AL++    WP        K   +    VI 
Sbjct: 89  ALRFIVLVIAGVIALRMLGFIWVGILPVVLALLVCTVLWPPVKWLREHKIP-AALAVVIT 147

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +    L       +      + K++V +  +  +    +  W+   P     S+     
Sbjct: 148 ILGFFALIGGVFAAIAPSVSSQTKQVVDQATVGIE---DLMDWVQGPPFNFDISQFEGAL 204

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                 L+  S T         I               +++  M++  FFF +DG     
Sbjct: 205 NDLTSMLQSQSST---------IASGVFSGLSTASSIVVTLAVMLVLTFFFLKDGPRFLP 255

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +          +  ++       +        ++++ + + +G    L GVP  +AL V
Sbjct: 256 WMRGFTGENAGWHLTEVLTRTWNTLAGFIRAQALVSMVDAVFIGIGLLLLGVPMALALAV 315

Query: 247 ITAIMAMIPGGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           IT     IP    +S  A++ I  L+   + NA  + +       I    L PFL    +
Sbjct: 316 ITFFAGFIPIVGAVSAGALAVIIALVTNGVANALLVLVLILAVQQIEGNILSPFLQSKAM 375

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            L        +  G    G++G F+   + A +AV  +     +     +I+S+
Sbjct: 376 NLHAAVVLLSVTVGSTMFGIIGAFLAVPVAATLAVWVRYHSEMVALRAGEITSD 429


>gi|329769779|ref|ZP_08261180.1| hypothetical protein HMPREF0433_00944 [Gemella sanguinis M325]
 gi|328838141|gb|EGF87759.1| hypothetical protein HMPREF0433_00944 [Gemella sanguinis M325]
          Length = 386

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 51/330 (15%), Positives = 121/330 (36%), Gaps = 11/330 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +    APV+ A +  +   P+ + F  K        +++A +    + +V ++ +    
Sbjct: 65  IVSSIIAPVILAYVFYYILNPLVNLFSKKLP--RFASSLLAMLVGFVIILVVIIGMVPII 122

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + + + L+  +    +         SD        E    +L+  +         + +  
Sbjct: 123 VEQTQTLIISIPKYIEMVRDYLDAYSDNAYMQVVIEYINNNLNTSK---------MSSEA 173

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +      A             ++ M   LFF  +D  +  + L SL              
Sbjct: 174 VTIATSVAQGVASSLSATATILMTMPFVLFFLLKDASNFKEYLVSLLPKKLKKPVVDTID 233

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   + S   G  ++++  G++L   Y + G+    +L  I A ++++P   PI     
Sbjct: 234 EIDNKVGSYIQGQMLVSLCIGVMLYIGYTIIGLHYGFSLATIAAFLSIVPYIGPIIAITP 293

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ +    +      + +   I  F+    + P ++G  + +  L   F ++ GV   G+
Sbjct: 294 AMLVAASTSWIMVVKMLVVWGIVQFLEANIISPNIMGKSMDMHPLTVIFVILIGVNLAGV 353

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G  +G  + +++ V+  +   AI E   K
Sbjct: 354 VGAILGIPVYSMLKVLGSKIQEAITERYNK 383


>gi|254433616|ref|ZP_05047124.1| conserved domain protein [Nitrosococcus oceani AFC27]
 gi|207089949|gb|EDZ67220.1| conserved domain protein [Nitrosococcus oceani AFC27]
          Length = 537

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 51/299 (17%), Positives = 100/299 (33%), Gaps = 9/299 (3%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             + L+S+Y L+    P ++ +++ +   P+      K   S T    + T   + +  +
Sbjct: 4   FLLFLISVYLLREILLPFVAGMVVAYLIDPLCDWLERK-GCSRTAATSLVTAGFILVVSM 62

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            LL L      E+  L+  +              S  P      E W+  +S  Q+    
Sbjct: 63  VLLLLVPLLRSEIVHLIETLPSLIARAQD-----STWPWLQLLQERWSIDMSQIQNAAKD 117

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               L       +    S  G+   +    +  M +  F+  RD   +  Q+DSL     
Sbjct: 118 QAGILIKWIGKTVGTILSS-GLALANLLSLVFIMPVVAFYLLRDWDKLIAQIDSLLPRKH 176

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               ++  +++  V+     G   + +  G        L G+   + +G++  +++ IP 
Sbjct: 177 APVIREQVKLIDTVLSGFIRGQVSVCLLLGTFYAVGLALIGLDFGLMVGMLAGLLSFIPY 236

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--DKTLRPFLVGGPIKLPFLPTF 313
              I      I L             + G   +  V     L P LVG  + L  +   
Sbjct: 237 VGTIVGFIAGIGLAFVQFSEWTPIFLVAGVFVIGQVVEGNVLTPRLVGNRVGLHPVMVI 295


>gi|309810412|ref|ZP_07704246.1| putative membrane protein [Dermacoccus sp. Ellin185]
 gi|308435652|gb|EFP59450.1| putative membrane protein [Dermacoccus sp. Ellin185]
          Length = 494

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 62/343 (18%), Positives = 129/343 (37%), Gaps = 22/343 (6%)

Query: 10  GIMRWMI-MFIILVSLYFLK----GF---FAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
              RW + + II+V+ Y +      F     P++  L I    WP  +    ++      
Sbjct: 76  SFARWSLRISIIIVTFYLVWRALTPFWVIILPLILGLFITTVLWPPAAWL-RRRGVRPAL 134

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A+ + +  + +    +  +      E  EL  K +        + RWL   P  + A++
Sbjct: 135 AALSSVLGGLLVVGGIIAAIVPTVAAEAPELARKSMEGVSQ---IQRWLQGPPLKIPATQ 191

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +         +   +    LKT+G D I               ++++  +I  FFF +DG
Sbjct: 192 I--------DNAVNVINEKLKTSG-DAIASGVFSGVTTVGSILVTLVLSLILAFFFIKDG 242

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
                 +  +      A+  ++     + +        I++  + + +G      GVP  
Sbjct: 243 DRFLPWVRLVTGERTGAHVTEVFTRAWQTLSGFIRTQAIVSAIDSVCIGIGLIACGVPLA 302

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           + L VIT     IP  GA ++     +  L+   +  A  + +   +   +    L+P L
Sbjct: 303 LPLCVITFFGGFIPIVGATVAGALAVLVALVTKGVTTAIIVLVIIILVQQLEGHILQPLL 362

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               + L  +    G+  G    G++G F+   ++A +AV+++
Sbjct: 363 QSRSMSLHPVLVLLGIAAGSEDHGVIGGFLAVPVVATLAVLFR 405


>gi|315037883|ref|YP_004031451.1| permease [Lactobacillus amylovorus GRL 1112]
 gi|325956356|ref|YP_004291768.1| permease [Lactobacillus acidophilus 30SC]
 gi|312276016|gb|ADQ58656.1| putative permease [Lactobacillus amylovorus GRL 1112]
 gi|325332921|gb|ADZ06829.1| permease [Lactobacillus acidophilus 30SC]
 gi|327183175|gb|AEA31622.1| permease [Lactobacillus amylovorus GRL 1118]
          Length = 400

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 59/340 (17%), Positives = 119/340 (35%), Gaps = 6/340 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F++  +  F      P+L A+I  +   P+      K         V+  + V+ + I
Sbjct: 42  ISFVLNPAWVFFSAVLPPLLLAVIQYYIMNPLVDWLERKARVPRVLTIVVLFLFVIVVLI 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +  L      ++  L+          +   +     P            + + Q    
Sbjct: 102 WIINILVPIVQNQINSLIKNWPHIWDDAVNATQNALSDPRLHPVRGSIKNMIDNTQKTLF 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S        +  I    S   M+     +++I     LFF  +DG  +   +       
Sbjct: 162 KSGQSAINTTLGNISSAVSIITMV----VMTLITAPFILFFMLKDGHQLRPYITKFAPEK 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +   + K+   +   + S   G   +A   G++    Y + G+P   AL ++   + +IP
Sbjct: 218 WQPSFSKLLYDINYALASYIRGQITVAFWVGVMFAIGYSVVGLPYGAALAILAGFLNLIP 277

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G PI+   V +  ++         L ++  IE  I  + L P ++G  + +  + T  
Sbjct: 278 YFGTPIALIPVIVIAIMTSGSMLVKVLVVF-VIEQTIETRVLSPLVMGNKMAMHPVTTIL 336

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            L+G     GL G+  G  + A++ +I        +   E
Sbjct: 337 LLIGASSVWGLWGVIFGIPIYAILKIIVSRVYNYYRRESE 376


>gi|20091671|ref|NP_617746.1| hypothetical protein MA2846 [Methanosarcina acetivorans C2A]
 gi|19916842|gb|AAM06226.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 405

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 60/340 (17%), Positives = 136/340 (40%), Gaps = 16/340 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   +I  + L +LY    FF  ++ + +  +   P+Y  F  +  +S    A+I   
Sbjct: 22  KVLYTVIISLVSLYTLYITSAFFYVLILSALFAYIIHPVY-FFCIRFVKSKQICALIPLG 80

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           ++  + +   + +    M E+  ++      N       R +  +              +
Sbjct: 81  TIFLITLASGVMIVKALMNEISRILEIPNTINGFANMDLRRIVGL--------FEPLIQT 132

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY---CLSIIFMIIALFFFYRDGFSIS 185
           HP  L      +L +   D++P+  +    I        + +I +++  ++   +  +I+
Sbjct: 133 HPGKLTESIGAYLNSLVTDYVPQIQNNIFQISTGLSILIIELIVIVVLTYYLLVESETIA 192

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            +L +L               +  + ++ F+   +  +  G++ G  YW  GVP  +  G
Sbjct: 193 TELPNLFPD--RKVGVVFLGELNYIYQNLFIVYFLTCLITGIIGGVLYWALGVPYSLIWG 250

Query: 246 VITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGG 303
           ++T IMA++P  GA   +  +++Y ++  + F A  L   G + L I+ D  +RP     
Sbjct: 251 ILTFIMALLPVVGAGTVYGLLALYYVLIDDFFTAGALIFLGIVFLSIIPDFIMRPRFARN 310

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              +    T       V  +G +G+ IGP+    +   ++
Sbjct: 311 RAAIHPAITLVAFAAPVFVLGPIGIIIGPLTYGFLLAAFR 350


>gi|256833416|ref|YP_003162143.1| hypothetical protein Jden_2203 [Jonesia denitrificans DSM 20603]
 gi|256686947|gb|ACV09840.1| protein of unknown function UPF0118 [Jonesia denitrificans DSM
           20603]
          Length = 397

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 65/345 (18%), Positives = 123/345 (35%), Gaps = 16/345 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R      Q I   +++ + L ++ +L   F PV+ ALII    +P+     ++    S+ 
Sbjct: 41  RLATRAVQTIAVLLVVGLTLWAMAYLGVVFIPVVLALIISSAVFPLMRWLRAR--GMSSL 98

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           LA    +      +  LL      +    +    V  A      +   L D+P  +    
Sbjct: 99  LATWLVLFSAFAVVGGLLTAIVQAVR--SQWSDLVSSAQDGFDELLVLLEDLPFEV---- 152

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                   P  L    ++ +           A         +       +I  FFF +DG
Sbjct: 153 -------DPAQLDDAKQSAIDFVTSSQFGSGAVAGLSATGTFFTGFFLTLIITFFFMKDG 205

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            +I + L    +  +    ++I     + +     G   +A  + L +G       VP  
Sbjct: 206 PAIWEFLLRPLDGQYYDRARRIGDRSVRTMGDYIRGTATVAAVDALGIGLGLAFLQVPLA 265

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           + L VI  + A IP  GA ++    ++  L+ G I+ A  +     +   +    L+P +
Sbjct: 266 LPLAVIVFLTAFIPLVGATLAGFLAALVALVDGGIWPALAVVGIVIVVNQLEGNFLQPKI 325

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +G  + L  L    GL  G    G++G  +   + A+   I +  
Sbjct: 326 MGKTLSLHPLVILIGLTAGTIIGGIVGAVLSVPIAAVAWGILQVW 370


>gi|269794149|ref|YP_003313604.1| putative permease [Sanguibacter keddieii DSM 10542]
 gi|269096334|gb|ACZ20770.1| predicted permease [Sanguibacter keddieii DSM 10542]
          Length = 455

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 104/298 (34%), Gaps = 13/298 (4%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           P+ +    +   S    A  + V ++    + ++      +  + +L  K V   Q  + 
Sbjct: 102 PVAAFLRRRARFSPMLAAATSVVLLIAAITLLVVVAGRSIVSGISDLSDKAVEGFQQAL- 160

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
              WL++ P  +    L     S   +L+  S   L           A            
Sbjct: 161 --TWLAEGPLHIDNESLSEYLDSGLDALQENSSALLSG---------ALSVTTTVGQVLA 209

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
             I  +    FF +DG SI   L  L          +  R     + S      ++A  +
Sbjct: 210 GSIIALFCTLFFLKDGRSIWGWLVGLLPRSTRERTHQAGRRGFVTLASYARTQILVAFID 269

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLW 284
            + +G    + GVP  + LGV+  + + IP    I   A+++ + +       A  +   
Sbjct: 270 SIGIGLGAAIIGVPLALPLGVLVFVGSFIPFVGAIVTGAMAVLVALVALGPVQALIMLAV 329

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
             +   I    L+P+L+G  + L  +     +  G  T G++G      + A++  ++
Sbjct: 330 VLLVQQIEGNVLQPWLMGHAVSLHPVAVLLVVTTGTLTAGIVGALFAVPIAAVLNTVF 387


>gi|157164430|ref|YP_001467226.1| hypothetical protein CCC13826_0381 [Campylobacter concisus 13826]
 gi|112802037|gb|EAT99381.1| acid membrane antigen A [Campylobacter concisus 13826]
          Length = 346

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 66/357 (18%), Positives = 130/357 (36%), Gaps = 23/357 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N +          + + +Y  K F   +  A ++      +  +F++  +   T  + +
Sbjct: 1   MNNRLFFGIFAFCALALVVYLFKPFLLDIFIAALLAVAVANVQIAFLALTKNRKTLSSGL 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T +++CLFI PLL+               +    +    +  +   +P  +   E   K
Sbjct: 61  TTFALLCLFIAPLLYAVVEIAKYAAGF--DINNVTKTIEFIKNYDFSLPESINFLEPKIK 118

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                  +K+L            +    +  G + L + + +I +++  FF    G  + 
Sbjct: 119 EFIGGLDIKMLFSQ---------VAANLANLGKLSLKFGVDMIIILVFFFFCNLYGNELI 169

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L      L     + I   V  V+   F       I +G +        G    V  G
Sbjct: 170 NYLKEALP-LKKEDTESILSEVGNVMGVVFYSTIANMIIQGFLFAIITSFYGYDG-VLTG 227

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI-VDKTLRP----- 298
           +  +  ++IP  G  +++  +SIY    GN   A  + L+  I + +  D  L+P     
Sbjct: 228 IFFSFASLIPVVGGFLAWAPISIYEFANGNTAAAITITLYTIIVISLGADTLLKPPIIKF 287

Query: 299 ---FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
               LV  P K+  L  FF ++ G+ T G  G+ +GP ++       K   +  + N
Sbjct: 288 INSKLVKIPTKINELLIFFAMIAGISTFGFWGVILGPAIVTFFISTIKLYTLLRERN 344


>gi|88799319|ref|ZP_01114897.1| permease, putative [Reinekea sp. MED297]
 gi|88777858|gb|EAR09055.1| permease, putative [Reinekea sp. MED297]
          Length = 391

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/340 (13%), Positives = 131/340 (38%), Gaps = 18/340 (5%)

Query: 13  RWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           +W+++  +++  +    L    +P L+AL++ +   P+       K           T  
Sbjct: 8   KWLVLASLVLLFWLITLLSPILSPFLTALLLAYLGDPLVDKLEEWKLSR--------TQG 59

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+  F+V  L      +L +  L+ ++    +       W+ +        E       +
Sbjct: 60  VVVTFLVLALIFALAALLVIPALIQQIDDLIKLVPQGVAWIKN--EATPYLEQRFDIDLY 117

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                 LS         + +    +     G+  + +  +++ + +  F+  RD   + +
Sbjct: 118 EFDWAWLSAKLDWGATGNVVRSVLANLTQSGLAMVSFIGNLVLIPVVTFYLLRDWDLLVE 177

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           ++ +L    + A    +++   + + + F G  ++ + +G++        G+   + +G+
Sbjct: 178 RVGALIPRYYIANVSSLAQQCHETLGAFFRGQLLVMLAQGIIYSIGLMAIGLDLGLLVGM 237

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           +  + +++P    I      ++      G++ +   + +   +   +    L P LVG  
Sbjct: 238 LAGLASIVPYLGAIIGIGAGLFAAWFQFGDLLHLVLVLVVFGVGQTLEGTVLTPKLVGDR 297

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           I L  +   F ++ G +  G +G+ +     A+I V+ ++
Sbjct: 298 IGLHPVAVIFAVLAGGQLFGFVGILLALPAAAVIMVLLRQ 337


>gi|302670428|ref|YP_003830388.1| hypothetical protein bpr_I1065 [Butyrivibrio proteoclasticus B316]
 gi|302394901|gb|ADL33806.1| hypothetical protein bpr_I1065 [Butyrivibrio proteoclasticus B316]
          Length = 382

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/334 (16%), Positives = 124/334 (37%), Gaps = 6/334 (1%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFIS---KKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           L G+  PV+S +I+ +   P+   F     +K ++ +    ++    + + ++ ++ LF 
Sbjct: 42  LYGYIKPVVSGMIVAYIFNPLSKVFNDKVFRKMKNESAKWKLSVCCTIIVIVLAVVLLFV 101

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK- 142
             + ++ + +S  V      +   + +         + L++  L    S        +  
Sbjct: 102 ALIPQLADSISTFVSNVDGYVATTQGVLRDLEKNDTTGLFSGELGALASFTDKILDKIGE 161

Query: 143 --TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
             +N +  +   ++  G    D  ++ I  I  L    R     ++    + +       
Sbjct: 162 YFSNNVGNVVTTSASIGKSVFDAVIAFILAIYLLLDKTRLKNGFARFTRLIMKPENHENV 221

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
                    +I        +  I  G V      +AG+P  V + VI  +  + P   PI
Sbjct: 222 AIFLDRCNSIIIRYISFDIVEGIIVGAVNLIFMLIAGMPYSVLISVIVGVTNLAPTFGPI 281

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
               +  ++L+  N + A     +  +   I    L+P L G  + +  L     +V G 
Sbjct: 282 VGCVIGAFILVLVNPWYAVAFIAFTIVLQTIDGYILKPRLFGESLGVSPLMILIAIVVGG 341

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           R  G++G+ +     A+I  +W++ ++   E + 
Sbjct: 342 RLFGVVGILLAIPFAAIIDFVWRDYVLKKLEERH 375


>gi|116491173|ref|YP_810717.1| permease [Oenococcus oeni PSU-1]
 gi|290890689|ref|ZP_06553759.1| hypothetical protein AWRIB429_1149 [Oenococcus oeni AWRIB429]
 gi|116091898|gb|ABJ57052.1| Predicted permease [Oenococcus oeni PSU-1]
 gi|290479664|gb|EFD88318.1| hypothetical protein AWRIB429_1149 [Oenococcus oeni AWRIB429]
          Length = 382

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/324 (16%), Positives = 116/324 (35%), Gaps = 6/324 (1%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
           APV++A I  +   P  +    K   S   + +I  + V    ++ ++++          
Sbjct: 60  APVITAGIFYYLLIPSVNWAHDKFHLSKQLIVLIIFLFVALFLVLFVVYIAPIIRDNFIV 119

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
                     H     +     PG            ++     I       TNGI  + +
Sbjct: 120 FFKHWPDYYSHWSKRLQVWLSYPGLKPIKNWVLDTNNNFNKTIINWSKNYLTNGIAGVGK 179

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                 MI     +++I     L++  +DG  + + +             ++   + K I
Sbjct: 180 ITRVITMI----VITLITFPFILYYMLKDGDQLPRYISQFFPARTRPSLLEVLHEINKQI 235

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLL 270
                G  + A+   ++    + + G+P  + +G++   + +IP  G+ +      I  L
Sbjct: 236 SDYLRGQILTAVAVSIMFMIGFSIIGLPYGIWIGLLAGPLNLIPYLGSFLVMVPAIIIAL 295

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             G I     + +   IE  +  + + P ++G  + +  +     L+G     GLLG+  
Sbjct: 296 F-GGIHLVIAVLIVFVIEQTLESRLIHPKIMGASMNIHPITVLVILLGAGEMFGLLGVAF 354

Query: 331 GPVLMALIAVIWKESIMAIKENKE 354
           G    A++ V+   S    +EN E
Sbjct: 355 GIPTYAVLKVLIGRSYHWWRENSE 378


>gi|298674448|ref|YP_003726198.1| hypothetical protein Metev_0489 [Methanohalobium evestigatum
           Z-7303]
 gi|298287436|gb|ADI73402.1| protein of unknown function UPF0118 [Methanohalobium evestigatum
           Z-7303]
          Length = 361

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/353 (16%), Positives = 131/353 (37%), Gaps = 19/353 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I    +    L  ++ L+     ++  L+  + S PIY        ++    A++AT+
Sbjct: 18  KIIAAIAVALFFLAIIFILRPLADGIILGLVFAYISRPIYLKL----NKNKRVGALVATI 73

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++   I  L       + ++  +V                   I        L T    
Sbjct: 74  CIVIPIIFILGMGILEIIQQITWIVQNQNEVISSLTGF------INNVEIPDFLHTGIEQ 127

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             Q +       L+  GI         +    + + L+++  II  +F   DG ++ Q++
Sbjct: 128 SIQDISQSIIPILREIGI-------VSYAKDLVIFLLNLVISIIVCYFLLSDGNTLYQKV 180

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +    +   ++     + K++   F+G    A+   ++    +++ G    +AL  + 
Sbjct: 181 LDITPSNYQKTFQNYVTELDKILGGIFIGNAYAALFVSIMSAIVFYVFGFSHILALSALI 240

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFI-VDKTLRPFLVGGPIK 306
            I A++P  A  +    +++       I  A   FL  +I +++  +  +RP+L     K
Sbjct: 241 FIAAVVPLFAGYMVLLPLALLRYFNQGIEAALIFFLVASIVIYLPPELFMRPYLASLKSK 300

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +  L      +GG    G+ G F  P+L+  +   ++  +  ++     +  N
Sbjct: 301 VHPLLIMLAFIGGAFVGGIAGFFAAPILLGALIAAYRVYVSELRSYGYNLGQN 353


>gi|315606054|ref|ZP_07881085.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315312336|gb|EFU60422.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 495

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/311 (16%), Positives = 98/311 (31%), Gaps = 3/311 (0%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             PV  AL +     P+ S    K     +  A +  +    +    L       + ++ 
Sbjct: 89  IMPVAIALTVAVLLEPLVSWMRRKLHFPPSLAAAVGLLVFFAVITGALSQAAAELIQQVP 148

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           +L ++     +  +        +  G    +  T  L+H                 + + 
Sbjct: 149 QLATQAADGFRALLDTITHNEFLKNGPLKID--TTVLNHWVDQLRSELVGWLNTNKEALA 206

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
             A            S + M+  LFFF ++G SI      L          + S      
Sbjct: 207 TGALNITSSVGTLATSGLTMLFCLFFFLKEGRSIWLWCVRLLPARARVPVYESSIRGWAT 266

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
             S       +A  + + +    +  GVP  + +GVIT   A +P  GA  S     +  
Sbjct: 267 FGSYVRTQIQVAAIDAIGIALGAFFLGVPLAIPIGVITFFAAFVPILGALTSGVIAVLVA 326

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            + G +  A  + +   +   +    L+PF++   + L  +     +  G    G+ G  
Sbjct: 327 AVNGGLTKAIIMLVIILVVQQVESNILQPFMMSNAVSLHPVAVMLVITAGSAIAGIAGAV 386

Query: 330 IGPVLMALIAV 340
               + A I  
Sbjct: 387 FSVPIAAFINA 397


>gi|222874438|gb|EEF11569.1| predicted protein [Populus trichocarpa]
          Length = 143

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 1/109 (0%)

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A ++++P  GA + +  V+IY L  G +     L  +G + + +VD  LRP LVG   K
Sbjct: 1   MAFLSLLPAVGAGLIWAPVAIYFLATGAVGKGVILIAYGVLVIGLVDNVLRPLLVGKDTK 60

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +P        +GG+   GL G  IGPV+ AL   IW        +++EK
Sbjct: 61  MPDYIVLISTLGGMALFGLTGFVIGPVIAALFMAIWDMFSRMQVQDEEK 109


>gi|317495386|ref|ZP_07953755.1| hypothetical protein HMPREF0432_00357 [Gemella moribillum M424]
 gi|316914445|gb|EFV35922.1| hypothetical protein HMPREF0432_00357 [Gemella moribillum M424]
          Length = 381

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/330 (15%), Positives = 127/330 (38%), Gaps = 11/330 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +     P++ A I  +   P+ + F  K        +++A V  + + +V ++ +    
Sbjct: 60  IVSSIMTPIIVAYIFYYILNPLVNFFSKKMP--RFLASLLAIVVGVIVILVVIIGMVPIV 117

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + + K L++ +    +         SD        E    +L+  Q         L +  
Sbjct: 118 VEQTKNLITSLPRYIEIVKGYLDTYSDNAYVQVVIEYINNNLNISQ---------LSSKA 168

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           ++     A             +I M   LFF  +D  + ++   S+          +   
Sbjct: 169 VEVATLVAQNIASSLSSTASVLITMPFVLFFLLKDATTFNKYFISILPKKLEKPVAETIE 228

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   + S   G  ++++  G++L   Y + G+    +L  I A ++++P   P+     
Sbjct: 229 EIDDKVGSYIQGQMLVSLCIGVMLFIGYNIIGLHYAFSLATIAAFLSIVPYLGPVIAITP 288

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ +    +      + +   I  F+    + P ++G  +K+  L   F ++ GV   G+
Sbjct: 289 AMLVAASTSWVMVIKMLVVWGIVQFLEGNIISPNIMGRSMKMHPLTVIFVILIGVNMAGV 348

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G  +G  + +++ V+  + + ++K   +K
Sbjct: 349 VGAILGIPVYSILKVLIVKLLTSLKNRYDK 378


>gi|25027637|ref|NP_737691.1| hypothetical protein CE1081 [Corynebacterium efficiens YS-314]
 gi|23492919|dbj|BAC17891.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 488

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 114/338 (33%), Gaps = 20/338 (5%)

Query: 12  MRWMIMFIILVSLYFL-----KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           +R + + +     + +     +G    +L+ ++    S P  + ++ K +      AV  
Sbjct: 60  LRILFIAVAAYVGWLILGQLWRGVLPVILALIVCTVLSTP--NMWLRKLKFPPALAAVTT 117

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +            +      + + L  +V       + V  WL   P  + A+++    
Sbjct: 118 IIIFFAAIAGVFWLIAPSIARQSQTLYYQVFDGI---LSVQLWLQGDPFNLDANDV---- 170

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                +       +L+           S  GM      +++  +++  FFF +DG     
Sbjct: 171 ----DNFFNEVVGWLQNQAGTIAGEIFSGLGMAT-SVIITLGVVLVLTFFFLKDGDRFLS 225

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
                       +  ++       +        I++  + + +G    + GVP   AL V
Sbjct: 226 WGRQAVGETSGWHLTELLTRAWNTLAGFIRAQAIVSAVDAVFIGIGLVIVGVPMAFALSV 285

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           IT +   IP  GA  +     I  L+      A  + +       +    L P L    +
Sbjct: 286 ITFVAGFIPIVGAFTAGALAVIVALVSLGFTEAVIVLIIVVAVQQLEGNILSPILQSKAM 345

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L  +     +  G    G++G F+   + A+IAV ++
Sbjct: 346 NLHPVIVLLSVTVGGTLFGIIGAFLAVPVAAMIAVAFR 383


>gi|284990630|ref|YP_003409184.1| hypothetical protein Gobs_2128 [Geodermatophilus obscurus DSM
           43160]
 gi|284063875|gb|ADB74813.1| protein of unknown function UPF0118 [Geodermatophilus obscurus DSM
           43160]
          Length = 444

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 53/334 (15%), Positives = 113/334 (33%), Gaps = 14/334 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L     PV+  L+     WP  +  + +        A++  +    +      ++     
Sbjct: 79  LWPILLPVILGLLFATVLWPP-TRLLRRLHFPPALAALVVLLGFFAVVAGLFSWIVPQVA 137

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            +  EL        Q    V  W++  P  +   ++         S++  ++        
Sbjct: 138 DQTGELADAATAGLQ---DVQEWVTGPPLNLGEDQIGQAVDQVIDSIQGNAQN------- 187

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             I  +A           L+++  ++  FFF +DG      L +        +   +S  
Sbjct: 188 --IAGYALTGVSALGSGLLNLVLALVLAFFFIKDGPRWLPWLAAQTGPKVAPHVAALSYK 245

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
               +        ++   +   +G   W+  VP  + L V+T   A IP        A +
Sbjct: 246 TWSTLSEFIRQQALVGFVDAFFIGLGLWILDVPLVLPLAVLTFFGAFIPIIGAFVAGAFA 305

Query: 267 I-YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +   L+      A  + +   +   +    L+P L G  + L        +  G    G+
Sbjct: 306 VLIALVSNGWQTALIVLVIVLVVQQLEGNVLQPILQGRGLNLHAAVVILAVTAGGSLYGI 365

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           LG F+G  + ALIAV+++     +     +++ +
Sbjct: 366 LGTFLGVPVAALIAVVYRYVRDELDGRTPEVADD 399


>gi|116753687|ref|YP_842805.1| hypothetical protein Mthe_0372 [Methanosaeta thermophila PT]
 gi|116665138|gb|ABK14165.1| protein of unknown function UPF0118 [Methanosaeta thermophila PT]
          Length = 339

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 66/349 (18%), Positives = 126/349 (36%), Gaps = 15/349 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I R  ++ ++L++   +  F  P++  +I+G     I               + IAT+  
Sbjct: 3   IKRNWMIAVVLIAFIAIAYFMFPLVDGIILGTVFAYIGRPIRDMFGPRKRLGSAIATIG- 61

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
               IVP+  +   G++E+      +  A   G       S I G     E++T      
Sbjct: 62  ---IIVPISLVLILGVMEIANFFMWI--AQNPGSMAREMSSTISGLEIPDEIYTLITGSL 116

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           QS+            +         +G   +   ++II  I   +F   DG        +
Sbjct: 117 QSILSFVADVAARMPL-------LDYGRRVVLLAVNIIVAIPVCYFLLCDGERFVDSWFT 169

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +        ++     + +++   FLG    AI   ++    ++   VP   A+  +  I
Sbjct: 170 IVPEESLDTYRAYFNRIDRILSGIFLGSMYTAIVGSVISAIVFYAFDVPRPFAMASLVFI 229

Query: 251 MAMIPGG-APISFTAVSIYLLIKGNIFNATCLFLWGAIELFI-VDKTLRPFLVGGPIKLP 308
             ++P   A      VSIY  I      A   F   +  +++  +  +RP+LV     + 
Sbjct: 230 AGLVPALTAWAVIVPVSIYRYIHMGPAEALMFFAVASALIYLPSELIVRPYLVAARSSIH 289

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
            L      +GG    G+ G F+ P +M +I  I++         KE  +
Sbjct: 290 PLLVMLSFLGGAMVAGIGGFFLAPAVMGVIVGIYQVRREQSLAAKETQN 338


>gi|152993672|ref|YP_001359393.1| hypothetical protein SUN_2095 [Sulfurovum sp. NBC37-1]
 gi|151425533|dbj|BAF73036.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 347

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 57/357 (15%), Positives = 139/357 (38%), Gaps = 28/357 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           N   ++  + +F ++ +    + F  P+  A+++   ++ +    I K  +S    A IA
Sbjct: 4   NKSLMITALFVFTVIGAYSIYQPFLLPLSVAILLTMATYNLTKKMI-KFFKSRKLSAGIA 62

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           T+ ++ +   P++++   G+  M +L        +    V          +   + W   
Sbjct: 63  TLLLVLIIFAPIVYMATTGVGYMTQL------DVEKIKHVTEVFKTFGEEIPFVKGWVHT 116

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
               +++    +             + +  G + + +  ++I +++  F     G    +
Sbjct: 117 ALSDKAIAGYVQDA---------TSYLTTAGSVGIGFVKNMILVLVFYFLINYYGERFFE 167

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            + +L   +      K+   V   +   F  + I AI EG + G      G  + +  G+
Sbjct: 168 LIRALLP-INKMKSAKMIHEVSSTMEVVFYSIIITAIFEGFLFGIMVSYFGF-NGLLFGM 225

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPF----- 299
           I    ++IP  G  + +  VS+Y     +   A  +  +  + + I+ D  ++P      
Sbjct: 226 IYGFASLIPLIGGAVVWVPVSLYAWTTIDANTAIFIASYSVVVISIIADTFIKPVIIKVI 285

Query: 300 ---LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              L+   I++  +  FF ++ G+ T G  G+ +GP + + +  I +  I    + +
Sbjct: 286 KEDLLKSNIEVNEIVIFFSILAGMSTYGFWGMILGPAITSFLIAITRIYIEYNSKEQ 342


>gi|227504066|ref|ZP_03934115.1| membrane protein [Corynebacterium striatum ATCC 6940]
 gi|227199332|gb|EEI79380.1| membrane protein [Corynebacterium striatum ATCC 6940]
          Length = 499

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/294 (15%), Positives = 102/294 (34%), Gaps = 13/294 (4%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
           ++ +    S+  AV+  +          LF+    + + + L  +     Q    +  W+
Sbjct: 100 WLRRHHVPSSLAAVLTILVSFSGLGALFLFIAPNFVRQSQTLYLQTANGIQ---ALRLWV 156

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
              P  +   E+ T               + +           +  G       ++++ +
Sbjct: 157 QQPPLNLNEDEIGTYID--------EIALWAQKQAGSIAGSVFNGIGQAT-SMIVTLMVV 207

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           ++  FFF +DG      L          +  ++       +        ++++ + + +G
Sbjct: 208 LVLTFFFLKDGHHFLPWLREATGRRTGWHLTELLTRGWNTLGGFVRAQALVSLVDAVFIG 267

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIEL 289
               + GVP  + L +IT I   IP    I   A+S+ + L+   +  A  + L   +  
Sbjct: 268 IGLAIIGVPLALTLAIITFIAGFIPFVGAIVAGALSVTIALVSLGVTKALLVLLLVLVVQ 327

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            +    L P+L    + L  +     +  G     L+G F+     A+ AV ++
Sbjct: 328 QLEGNVLSPWLQSKAMNLHPVVVLTSVTVGSALFNLVGAFLAVPAAAMFAVAYR 381


>gi|312137386|ref|YP_004004723.1| hypothetical protein Mfer_1175 [Methanothermus fervidus DSM 2088]
 gi|311225105|gb|ADP77961.1| protein of unknown function UPF0118 [Methanothermus fervidus DSM
           2088]
          Length = 325

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 66/333 (19%), Positives = 134/333 (40%), Gaps = 27/333 (8%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           ++ + ++++S   L   F  ++ + +  + +       ISKK E       ++    M  
Sbjct: 14  FLTIILVILSFIVLYPLFTTLILSAVFAYGTN-----LISKKFEKKVKYKSLSITIGMIT 68

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            ++P+LF+  +    +                    L+ +P  +    + +     P  +
Sbjct: 69  IVLPILFVLLFLFYSL--------------------LNALPSLIKVVNVHSIMKYIPFKV 108

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                T L    ++F+  +            + ++  I++ F+  RDG  + Q + S+  
Sbjct: 109 PTDIITDLTHRVVEFVFVYLLELVRSLPTLSIHLLVFIMSTFYLARDGTKLIQYIRSILP 168

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                 + K+ R +   IR+ F G  + A+  G+    AY++ G P    LGVIT    +
Sbjct: 169 KNKVKLFNKMLREIEVTIRAIFYGHFLAALIVGIFATMAYYILGYPFPAILGVITMFTTV 228

Query: 254 IPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP  G    + ++ IY +I GN+     + ++G   L  +D  LR  L G   ++  +  
Sbjct: 229 IPVIGPWPVYLSLGIYDIIHGNVIRGVAIIVFGK-SLGFLDVYLRTELGGKYAEIHPMLF 287

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             G +GG    G+ G  +GP+++     I K  
Sbjct: 288 LVGFIGGPMIWGIAGFILGPLILCTTHTIIKTY 320


>gi|118587353|ref|ZP_01544779.1| transport protein [Oenococcus oeni ATCC BAA-1163]
 gi|118432177|gb|EAV38917.1| transport protein [Oenococcus oeni ATCC BAA-1163]
          Length = 382

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 53/323 (16%), Positives = 115/323 (35%), Gaps = 4/323 (1%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
           APV++A I  +   P  +    K   S   + +I  + V    ++ ++++          
Sbjct: 60  APVITAGIFYYLLIPSVNWAHDKFHLSKQLIVLIIFLFVALFLVLFVVYIAPIIRDNFIV 119

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
                     H     +     PG            ++     I       TNGI  + +
Sbjct: 120 FFKHWPDYYSHWSKRLQVWLSYPGLKPIKNWVLDTNNNFNKTIINWSKNYLTNGIAGVGK 179

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                 MI     +++I     L++  +DG  + + +             ++   + K I
Sbjct: 180 ITRVITMI----VITLITFPFILYYMLKDGDQLPRYISQFFPARTRPSLLEVLHEINKQI 235

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
                G  + A+   ++    + + G+P  + +G++   + +IP          +I + +
Sbjct: 236 SDYLRGQILTAVAVSIMFMIGFSIIGLPYGIWIGLLAGPLNLIPYLGSFLAMVPAIIIAL 295

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
            G I     + +   IE  +  + + P ++G  + +  +     L+G     GLLG+  G
Sbjct: 296 FGGIHLVIAVLIVFVIEQTLESRLIHPKIMGASMNIHPITVLVILLGAGEMFGLLGVAFG 355

Query: 332 PVLMALIAVIWKESIMAIKENKE 354
               A++ V+   S    +EN E
Sbjct: 356 IPAYAVLKVLIGRSYHWWRENSE 378


>gi|295397084|ref|ZP_06807196.1| membrane protein [Aerococcus viridans ATCC 11563]
 gi|294974676|gb|EFG50391.1| membrane protein [Aerococcus viridans ATCC 11563]
          Length = 425

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 59/327 (18%), Positives = 127/327 (38%), Gaps = 8/327 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F++    P++ A I  + + P+ +    K    +   A++  + ++ + +  L+ L    
Sbjct: 83  FIQYVSLPIIVAAIFYYLTVPLVNRIEKKGLNRTWGSAIV--LLLIAVVVTGLIALIPTV 140

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             E + L++     +         L     G W  ++     S   ++  LS    ++  
Sbjct: 141 ADEGRNLINN---WDTIWSDYQSRLQSFIRGDWYDQVNMVFQSAMNNVLDLSSFNWESIA 197

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              I   +S  G +     ++I    I LF+  RDG  +   +             ++  
Sbjct: 198 NSAITSVSSIVGTVT-KVAVAIFTAPIILFYMLRDGHKLPTYVAQFLPIKIRKATLRLLS 256

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTA 264
            +   I     G  I+AIG  ++    Y + G+P  V +GV    + +IP  G+ ++   
Sbjct: 257 DMNLQISQYIRGQIIVAIGVAIMFVVGYSIVGLPYGVIIGVAAGFLNIIPYIGSFLAMVP 316

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             I  ++ G +     L ++ AIE  I  + + P ++G  + +  +     L+      G
Sbjct: 317 AIIVAIVVGPMMIVKVLIVF-AIEQTIESRVISPQVLGSNMAIHPVTIMLLLISAGSIFG 375

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKE 351
           + G+ +   + A+I VI+    +  K 
Sbjct: 376 IAGVVLVIPIYAVIKVIFNHFFVWYKN 402


>gi|14590842|ref|NP_142914.1| hypothetical protein PH1000 [Pyrococcus horikoshii OT3]
 gi|8928493|sp|O58728|YA00_PYRHO RecName: Full=UPF0118 membrane protein PH1000
 gi|3257414|dbj|BAA30097.1| 355aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 355

 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 59/347 (17%), Positives = 143/347 (41%), Gaps = 33/347 (9%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            M   + +   +I+ ++ +++  +  FF+P+  A I  +  +P++     +    ++  A
Sbjct: 27  FMEVSRVVTWIIIITLVALAIKTILPFFSPLFFAFITAYALYPLHIKLKERIGSKNS--A 84

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ ++   ++ LL L Y     + +    +    +  I +P     +          
Sbjct: 85  ILLTLFLLLGALMILLILVYTLTPVIGQAYDYLTNLEKIKINIPLVPKSV---------- 134

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                   SL+ + + F++      +             Y L +I  +  ++FF      
Sbjct: 135 ------ISSLEGVIDEFIERGKGYLV-----SLTFSVPKYLLQVIVYLTFVYFFLVKEKE 183

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV---PS 240
             + +    E L      +I       +++      ++ I +G+++   + +  V   P+
Sbjct: 184 ARELITFEDEKLI-----RIIERGNLTLQALIRVWLLLNIVKGILMTLGFLIFKVSNLPT 238

Query: 241 HVALGVITAIMAMIPGG-APISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRP 298
            +  G++T + + IP     + + A + YL+ +G+I     L ++G   +  + D T+RP
Sbjct: 239 AILAGLLTVLFSFIPLFEGWMIWLAGAFYLVKQGHIIAGIGLAVYGFTLVSPLPDFTIRP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            LV    +   +    G++GG   +GL GL IGP+++ +   + +E 
Sbjct: 299 KLVAREAEFNDVLVLIGMIGGTWGLGLKGLIIGPIVLNVAIEMLREW 345


>gi|20091716|ref|NP_617791.1| hypothetical protein MA2895 [Methanosarcina acetivorans C2A]
 gi|19916893|gb|AAM06271.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 372

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 51/322 (15%), Positives = 125/322 (38%), Gaps = 15/322 (4%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P+   +++G     I      K  +     A+IA++       +P++F+   G++E+   
Sbjct: 39  PLADGIVLGIVFAYIARPIQVKFGKYRKIGALIASL----FIFIPIVFIVGAGVVEILNQ 94

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
           +S +    ++   V   + D   G+     + + +++  ++  L  + L   G   +  +
Sbjct: 95  ISWI---FENQTSVMSGILDFIHGLEIPSTYVERINN--AIWNLFTSLLPAVGSVGLISY 149

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
           A   G+    + ++ I  I   +F   DG  +      +    +     + +  +  +++
Sbjct: 150 AQSIGL----FVINFIVSIFFCYFLLADGDRLYCAFIGMIPSDYQNIVNRYASHLDLILK 205

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYLLI 271
             F+G    A+   +     +   G    +AL  +  I ++IP  A  +    ++++   
Sbjct: 206 GVFIGNAYSALIVSVTSVFVFRAFGFSHVLALATLVFIASVIPLFAGYMVLVPMALFRYF 265

Query: 272 KGNIFNATCLFLWGAIEL-FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +    +A   F+  ++ +    +  LRPFL     K+  +      +GG    G+ G F 
Sbjct: 266 EQGFQSAALFFVVSSLVIYGPPELILRPFLTSLKSKIHPMLLMLAFLGGAFVGGIAGFFA 325

Query: 331 GPVLMALIAVIWKESIMAIKEN 352
            P+L+  +   ++     I   
Sbjct: 326 APILLGALVAAYRVYQEQIHPE 347


>gi|84497791|ref|ZP_00996588.1| integral membrane protein [Janibacter sp. HTCC2649]
 gi|84381291|gb|EAP97174.1| integral membrane protein [Janibacter sp. HTCC2649]
          Length = 404

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 60/332 (18%), Positives = 111/332 (33%), Gaps = 19/332 (5%)

Query: 14  WMIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +I   +L +L+    F     P++ A+++     PI               A +  +  
Sbjct: 63  IIIAAAVLGALWLFAYFSEVTVPIIIAMLLTALLMPITRFLARVIP--RGAAAGLTVLGT 120

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + I  L F+      +  ++ ++V                     W    +    S  
Sbjct: 121 LAVIIGALSFVGSQFSSQFSDISTQVGQGIDE------------IRSWFRTSFGLTDSQV 168

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                 +   L + G   +   A++ G+            + ALFFF  DG  I   +  
Sbjct: 169 DGWIDKAREQLSSGGGS-LGETAAQAGLTVTHLVAGFFISMFALFFFLYDGERIWAWVVR 227

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L              I    + +      ++A  + L +G    L GVP    + V+   
Sbjct: 228 LFPRTSRDRVHSSGVIAWGQLSAFTRATILVAAVDALGIGIVAGLLGVPFASGVAVLVFF 287

Query: 251 MAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            A IP        AV + L +       A  +         +    L+PFL+G  +++  
Sbjct: 288 GAFIPVIGAAISGAVPVLLALVALGPVQALIMLGGVIAVQQLESHVLQPFLLGRAVRVHP 347

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           L    G+ GGV   G+LG  I   L+A++  +
Sbjct: 348 LAVILGIAGGVVAAGILGALIAVPLVAVLNAV 379


>gi|119962201|ref|YP_947065.1| permease [Arthrobacter aurescens TC1]
 gi|119949060|gb|ABM07971.1| putative permease [Arthrobacter aurescens TC1]
          Length = 426

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 55/333 (16%), Positives = 116/333 (34%), Gaps = 17/333 (5%)

Query: 15  MIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +I+ +I   ++ L        PV+ A ++     P+ +   ++K  +      I  +  +
Sbjct: 35  LILLMIGAMVWLLGKVSFLIIPVMVAALLAGLLHPVVAWLRNRKVPN-GGAVAITVLGFI 93

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +    L  +    +     L  + +   Q    +  WL+D P  + A ++         
Sbjct: 94  GVIGGALALVGRQLVTGFGALWQEALAGIQ---QIQTWLADGPLHLTADQIDQYISDGAN 150

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +L+  S + L           A  FG     +   ++  +  L FF  +G  I   L  L
Sbjct: 151 ALQNNSSSILSG---------ALSFGSTAGHFAAGLVLALFILIFFLLEGPRIWAFLVRL 201

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                        R     + S       +A  + + +G    +  VP  + L V+  I 
Sbjct: 202 LPKSARRATDGAGRRGWTSMVSYVRIQMFVAFVDAVGIGVGAAIIQVPLALPLAVLVFIG 261

Query: 252 AMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + IP    +   A+++ L L+     NA  +     +   +    L+P ++G  + L  +
Sbjct: 262 SFIPVVGALVTGAIAVLLALVANGPINALIMLAIVLVVQQLESHILQPLVMGKAVALHPV 321

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                +  G    G+ G      L+A++    +
Sbjct: 322 AVILSVAAGSYLAGIPGALFAVPLLAVVNTAVR 354


>gi|223043206|ref|ZP_03613253.1| membrane protein YubA [Staphylococcus capitis SK14]
 gi|222443417|gb|EEE49515.1| membrane protein YubA [Staphylococcus capitis SK14]
          Length = 404

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 56/353 (15%), Positives = 134/353 (37%), Gaps = 14/353 (3%)

Query: 11  IMRWMIMFIILVSLYFLKGFF-------APVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           ++  +++FI     Y  + F        AP++ +LI+ +   P+ +     +        
Sbjct: 39  VLLGIVIFIFDKVSYVFEPFIIIFNTIAAPIIVSLILFYLFNPLVNLMERYRIPR----- 93

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI-PVPRWLSDIPGGMWASEL 122
           ++    +    +  +  +    +  +   +  ++  + H +  + + +  I    + S  
Sbjct: 94  LLGITIIYVAVVGIITLIVNLLIPIIGSQIEGLIKNSPHYLNKITQSIEKITTNSFLSSY 153

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            ++     +S +    + L      F P+ AS F     +  + I+     LFF  +DG 
Sbjct: 154 MSQVNDWLESAQKKIPSMLSEYFDGFGPKLAS-FAEAVSNVGVVIVTTPFILFFMLKDGH 212

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                   +    F   +  +   +   + S   G  I++   G++L   Y + G+   +
Sbjct: 213 RFKDYTTKIMPPKFRKDFHDLLEKMSVQVGSYIQGQIIVSFCIGVLLLIGYSIIGLKYPL 272

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L  I A+ +++P   P    + +I + I  + +    L +   +  F     + P ++G
Sbjct: 273 VLASIAAVTSVVPYLGPTIAISPAIVIAIITSPWMLLKLVIVWTLVQFFEGHFISPNVMG 332

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             +K+  L   F L+     M ++G+ IG  L A++ V+     +  K    +
Sbjct: 333 KTLKIHPLTIIFILLCAGNLMNVVGVIIGIPLYAVLKVLVSHIFLLFKRRYNR 385


>gi|227877174|ref|ZP_03995248.1| permease [Lactobacillus crispatus JV-V01]
 gi|256842728|ref|ZP_05548216.1| permease [Lactobacillus crispatus 125-2-CHN]
 gi|256848962|ref|ZP_05554396.1| permease [Lactobacillus crispatus MV-1A-US]
 gi|262045695|ref|ZP_06018659.1| permease [Lactobacillus crispatus MV-3A-US]
 gi|293380173|ref|ZP_06626255.1| conserved hypothetical protein [Lactobacillus crispatus 214-1]
 gi|295692527|ref|YP_003601137.1| permease [Lactobacillus crispatus ST1]
 gi|312977748|ref|ZP_07789495.1| putative membrane protein [Lactobacillus crispatus CTV-05]
 gi|227863228|gb|EEJ70673.1| permease [Lactobacillus crispatus JV-V01]
 gi|256614148|gb|EEU19349.1| permease [Lactobacillus crispatus 125-2-CHN]
 gi|256714501|gb|EEU29488.1| permease [Lactobacillus crispatus MV-1A-US]
 gi|260573654|gb|EEX30210.1| permease [Lactobacillus crispatus MV-3A-US]
 gi|290923217|gb|EFE00138.1| conserved hypothetical protein [Lactobacillus crispatus 214-1]
 gi|295030633|emb|CBL50112.1| Permease [Lactobacillus crispatus ST1]
 gi|310895487|gb|EFQ44554.1| putative membrane protein [Lactobacillus crispatus CTV-05]
          Length = 395

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 59/343 (17%), Positives = 122/343 (35%), Gaps = 6/343 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           F++  +  F      P+L A+I  +   P+      K +       ++  + V+   I  
Sbjct: 43  FVLNPAWIFFSAILPPLLLAVIQYYIMNPVVDWCERKFKIPRVVTIIVLFLLVVVALIWI 102

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +  L      ++  L+          +   +     P            + + Q     S
Sbjct: 103 INILVPIAQNQINSLIKNWPHIWNDAVNATQNALQDPRLHSFKGSIKGMIDNTQKTLFKS 162

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
                   I  I    S   M+     ++++     LFF  +DG  +   +       + 
Sbjct: 163 GQSTINATIGNISSAVSIITMV----AMTLLTAPFILFFMLKDGHQLRPYITKFAPEKWQ 218

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-G 256
             + K+   +   + S   G   +A   G++    Y L G+P  VAL ++   M +IP  
Sbjct: 219 PSFSKLLYDINYAVASYVRGQITVAFWVGVMFSLGYILIGLPYGVALAILAGFMNLIPYF 278

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           G P++   V +  ++         + +  AIE  I  + L P+++G  +++  + T   L
Sbjct: 279 GTPLAMIPVIVISIMTSGSML-IKVLIVFAIEQTIESRILSPWVMGNKMEMHPITTILLL 337

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +G     GL G+  G  + A++ +I        +   +    N
Sbjct: 338 IGASAVWGLWGVVFGIPIYAILKIIVSRVYNYYRRESKLFEEN 380


>gi|258650755|ref|YP_003199911.1| hypothetical protein Namu_0503 [Nakamurella multipartita DSM 44233]
 gi|258553980|gb|ACV76922.1| protein of unknown function UPF0118 [Nakamurella multipartita DSM
           44233]
          Length = 416

 Score =  105 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 52/329 (15%), Positives = 115/329 (34%), Gaps = 29/329 (8%)

Query: 9   QGIMRWMIMFI-ILVSLYFLKGFFAPVLSALII--------GFTSWPIYSSFISKKEESS 59
           Q  +R +I+ + +  + + L       L ++++            WP       K     
Sbjct: 58  QWTLRLLIIGVGLFAAFWILGQ-----LWSVVLPILLGLLLATILWPPVRFMRRKLPN-- 110

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
              A++A + ++ +F   +  L      +  ELV +          +  WL+  P  +  
Sbjct: 111 ALAAIVALIGLLVIFSGLIAVLAPQVTSQAGELVDRATAGLTT---LQSWLAGPPFNLGP 167

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
             L          ++  S+  L                       ++++  ++  FFF +
Sbjct: 168 DALGGLLDKGISEIQSNSQEVLGVVLGSL---------SAIGSAVITLVLALVLCFFFLK 218

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG      L +        ++ ++S  V   +         +A  +G+ +G   WL GVP
Sbjct: 219 DGPKFVPWLRTWIGRAAGTHFAELSDRVWTALGQYVWSQAAVAAVDGVFIGVGVWLLGVP 278

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             + + V+T     +P        +V++ + L+   I+ A  +     +   +    ++P
Sbjct: 279 FALPIAVLTFFGGFVPIVGAFVAGSVAVLVALVSNGIWTAVGVLAIVLVVQQLEGNVMQP 338

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            LVG  + +    T   +  G    G++G
Sbjct: 339 ILVGKTMNIHAAVTIAVVALGGTLFGIVG 367


>gi|21325574|dbj|BAC00195.1| Predicted permease [Corynebacterium glutamicum ATCC 13032]
          Length = 444

 Score =  105 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 63/354 (17%), Positives = 124/354 (35%), Gaps = 18/354 (5%)

Query: 11  IMRWMIMFIILVSLYFLKGFF----APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
            +R++++ I  V    + GF      PV+ AL++    WP        K   +    VI 
Sbjct: 57  ALRFIVLVIAGVIALRMLGFIWVGILPVVLALLVCTVLWPPVKWLREHKIP-AALAVVIT 115

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +    L       +      + K++V +  +  +    +  W+   P  +  S+     
Sbjct: 116 ILGFFALIGGVFAAIAPSVSSQTKQVVDQATVGIE---DLMDWVQGPPFNLDISQFEGAL 172

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                 L+  S T         I               +++  M++  FFF +DG     
Sbjct: 173 NDLTSMLQSQSST---------IASGVFSGLSTASSIVVTLAVMLVLTFFFLKDGPRFLP 223

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +          +  ++       +        ++++ + + +G    L GVP  +AL V
Sbjct: 224 WMRGFTGENAGWHLTEVLTRTWNTLAGFIRAQALVSMVDAIFIGIGLLLLGVPMALALAV 283

Query: 247 ITAIMAMIPGGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           IT     IP    +S  A++ I  L+   + NA  + +       I    L PFL    +
Sbjct: 284 ITFFAGFIPIVGAVSAGALAVIIALVTNGVTNALLVLVLILAVQQIEGNILSPFLQSKAM 343

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            L        +  G    G++G F+   + A +AV  +     +     +I+S+
Sbjct: 344 NLHAAVVLLSVTVGSTMFGIIGAFLAVPVAATLAVWVRYHSEMVALRAGEITSD 397


>gi|154173718|ref|YP_001408692.1| acid membrane antigen A [Campylobacter curvus 525.92]
 gi|112802392|gb|EAT99736.1| acid membrane antigen A [Campylobacter curvus 525.92]
          Length = 348

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 66/351 (18%), Positives = 125/351 (35%), Gaps = 23/351 (6%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           N +      I   + + +Y  K F   +  A ++   +  I   F+   +E  T  A + 
Sbjct: 4   NSRIFFGIFIFVALSLVVYLFKPFLLDIFIAALLAVATSNINVLFLKLTKERKTLSAALT 63

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           T  +  LFI P L+                +      I    +            L +  
Sbjct: 64  TAVLFTLFIAPFLYAVIELTRYASTFNMNNITGTIDYIKNYDF-----------ALPSSI 112

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                  K              I    +  G +   +   + F+++  FF    G  +  
Sbjct: 113 EFLEPKFKEFIAQIDIKAITANILTNLANLGKLSAKFITDVAFILVFFFFAILYGNELVI 172

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +      +  +    I   +  V+      + I AI +GL+      + G  +   +G+
Sbjct: 173 YMKKALP-MKESESGFILSEMANVMSVVLYSIIINAILQGLLFAFITIIYGY-NGFLMGI 230

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPF----- 299
           + A M++IP  G  +++  +S+Y L  GN   A  + L+  I + ++ D  L+P      
Sbjct: 231 LFAFMSLIPVVGGVLAWAPISLYELANGNATGAIVIALYTIIVISVIADTFLKPLVIKFI 290

Query: 300 ---LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              LV  P K+  L  FF ++ G+ T G  GL +GP ++       K  ++
Sbjct: 291 NDKLVKIPTKINELLIFFAMIAGITTFGFWGLILGPAIVTFFLSTIKLYVL 341


>gi|259506962|ref|ZP_05749862.1| membrane protein [Corynebacterium efficiens YS-314]
 gi|259165414|gb|EEW49968.1| membrane protein [Corynebacterium efficiens YS-314]
          Length = 470

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 114/338 (33%), Gaps = 20/338 (5%)

Query: 12  MRWMIMFIILVSLYFL-----KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           +R + + +     + +     +G    +L+ ++    S P  + ++ K +      AV  
Sbjct: 42  LRILFIAVAAYVGWLILGQLWRGVLPVILALIVCTVLSTP--NMWLRKLKFPPALAAVTT 99

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +            +      + + L  +V       + V  WL   P  + A+++    
Sbjct: 100 IIIFFAAIAGVFWLIAPSIARQSQTLYYQVFDGI---LSVQLWLQGDPFNLDANDV---- 152

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                +       +L+           S  GM      +++  +++  FFF +DG     
Sbjct: 153 ----DNFFNEVVGWLQNQAGTIAGEIFSGLGMAT-SVIITLGVVLVLTFFFLKDGDRFLS 207

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
                       +  ++       +        I++  + + +G    + GVP   AL V
Sbjct: 208 WGRQAVGETSGWHLTELLTRAWNTLAGFIRAQAIVSAVDAVFIGIGLVIVGVPMAFALSV 267

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           IT +   IP  GA  +     I  L+      A  + +       +    L P L    +
Sbjct: 268 ITFVAGFIPIVGAFTAGALAVIVALVSLGFTEAVIVLIIVVAVQQLEGNILSPILQSKAM 327

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L  +     +  G    G++G F+   + A+IAV ++
Sbjct: 328 NLHPVIVLLSVTVGGTLFGIIGAFLAVPVAAMIAVAFR 365


>gi|308071200|ref|YP_003872805.1| hypothetical protein PPE_04507 [Paenibacillus polymyxa E681]
 gi|305860479|gb|ADM72267.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 387

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/316 (14%), Positives = 125/316 (39%), Gaps = 5/316 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            LK    PV+ + ++ +   P+       K +   +  ++  + ++ +  + +  +    
Sbjct: 50  LLKTIILPVILSGVLYYLLNPLVDVLERNKVKR-IYSIIVLFLLIIGVIAIVVTSVVPVI 108

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             +++ L+      ++    V R    + G  + ++       +P  L   +   L +  
Sbjct: 109 RDQIQGLIQNFPDYSE---QVQRQFEKLIGSDFVNQFQNTIHINPSELASKASEKLSSFI 165

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            +      S  G++  +  L+I  +   LF+  +DG  + Q +  +   +F     +I  
Sbjct: 166 NNAWTGVGSFLGVVT-ETVLAIATVPFILFYLLKDGHKLPQFILKMLPPMFRKETNRIMN 224

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   + S   G  I++   G +L   Y + G+   + L VI +  +++P   P+     
Sbjct: 225 EMNHQVSSYIRGQIIVSFCIGALLYIGYLIIGLDYSLTLAVIASFTSVVPYLGPVIAITP 284

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +      + +   +   I  K + P ++G  +++  +   F ++      G+
Sbjct: 285 ALIVALVTSPIMLLKMVIVWTVVQLIEGKFISPQIMGKSLRVHPITIIFVILTAGNLFGV 344

Query: 326 LGLFIGPVLMALIAVI 341
           +G+ +     A++ VI
Sbjct: 345 VGIVLAVPGYAVLKVI 360


>gi|330718619|ref|ZP_08313219.1| permease [Leuconostoc fallax KCTC 3537]
          Length = 402

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/364 (13%), Positives = 130/364 (35%), Gaps = 18/364 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFF-----------APVLSALIIGFTSWPIYSSFISKKEE 57
            G++  +++ +I+  +Y ++              AP++ A ++ +   P+ +   +  + 
Sbjct: 22  NGLIMALLVLLIIFMIYQIRFIIEPMRALFTAVGAPIIIAGVLYYLLIPVVNWLNTHTKM 81

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV-SKVVLANQHGIPVPRWLSDIPGG 116
              F   +  V+V+ +  + +         ++  LV +           +    +     
Sbjct: 82  PKKFSVGLVLVAVLAILALIVTIAVTIISDQVSGLVDNWPNYWQNSQRVINDTFATSEFQ 141

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
                L   +    Q++   S  +L++           +         ++++     LF+
Sbjct: 142 TVREWLSNTNSDINQTVADWSRKYLQSGVSGI-----GQIASTLTTVGVTLVASPFILFY 196

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
              DG  +S  +            + + + V K +     G   +A+   ++    Y + 
Sbjct: 197 MLLDGNKLSSFIADKLPSKAQTSLQSVLQEVSKQVAQYIRGQLGVALAVIIMFSIGYTII 256

Query: 237 GVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
           G+P  + L  +  +  MIP  G+ ++   + I  L+ G         +   IE  I    
Sbjct: 257 GLPYGILLAFMAGLFNMIPYVGSILAQVPIFIVALVAGGPKLVLFALIVLVIEQPIEGHV 316

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           + P ++G  +K+  +     L+ G    G+LG+ +     A++ V+        + N + 
Sbjct: 317 IAPKILGSALKIHPVTVIVVLLTGGHIFGVLGIILSVPTYAVVKVLVTHIYEWWRTNSDL 376

Query: 356 ISSN 359
            + +
Sbjct: 377 FAED 380


>gi|14521184|ref|NP_126659.1| hypothetical protein PAB0658 [Pyrococcus abyssi GE5]
 gi|5458402|emb|CAB49890.1| Predicted permease [Pyrococcus abyssi GE5]
          Length = 329

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 62/351 (17%), Positives = 143/351 (40%), Gaps = 33/351 (9%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   + +   +++ I+ ++L  +  FF+P+  A I  +  +P++     +   +  + AV
Sbjct: 1   MEVNKVVFSVIVLIILFLALKVIIPFFSPLFFAFITAYILYPVHVKISERF--NEKYSAV 58

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
             T+ ++   ++ LL L Y     + +    +       + +P                 
Sbjct: 59  FLTLLLLLGALILLLILIYTLAPVVNQAYEYLSDIESLTLSIP----------------- 101

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                  S    +   L   G D++             Y L ++  +  ++FF     +I
Sbjct: 102 FIPGDIASSLQETVDKLVEIGKDYLVSITFSV----PKYLLQVVVYLTFVYFFLVKRKAI 157

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW---LAGVPSH 241
            + L    E L      +I +     +++      ++ I +G+++   +    ++ VP+ 
Sbjct: 158 EELLSFRDERLV-----RIVKRGNVTLQALIRAWLLLNIAKGILMTVGFLAFKVSNVPTA 212

Query: 242 VALGVITAIMAMIPGG-APISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPF 299
           +  G++T + + +P     + + A + YL+  G+I     L ++G + +  + D T+RP 
Sbjct: 213 ILAGILTVLFSFVPLFEGWMIWLAGAFYLIKNGDILTGLGLAIYGFVLVSPLPDFTIRPK 272

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           LV        +    G++GG   +GL GL IGP+++ +   + +E  +  K
Sbjct: 273 LVAREANFDEVLVLIGMIGGTWGLGLKGLIIGPIVLNVAIEMLREWKIQNK 323


>gi|116669725|ref|YP_830658.1| hypothetical protein Arth_1164 [Arthrobacter sp. FB24]
 gi|116609834|gb|ABK02558.1| protein of unknown function UPF0118 [Arthrobacter sp. FB24]
          Length = 457

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/333 (17%), Positives = 119/333 (35%), Gaps = 17/333 (5%)

Query: 15  MIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +I+ ++   ++ L        PV+ A ++     P+     +++  +      I  +  +
Sbjct: 67  LILLVVAALIWMLSKISFLIIPVMVAALLAGLLSPVTRWLKARRVPN-GGAVAITVLGFL 125

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L    L  +    +    EL S+ +   Q    +  WL+D P  + A+++         
Sbjct: 126 GLIGGSLALVGRQLVAGFSELWSEALTGIQ---QIQGWLADGPLHLTAAQMDQYLQEATA 182

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +L+  S + L           A  FG     +   +I  +  L FF  +G  I   L  L
Sbjct: 183 ALQNNSSSILSG---------ALSFGSTAGHFAAGLILALFVLIFFLLEGDRIWAFLVRL 233

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                 A      R     + S       +A  + + +G    + GVP  + LGV+  I 
Sbjct: 234 LPRKARAATFGAGRKGWASMVSYARIQMFVAFVDAVGIGVGAAIIGVPLALPLGVLVFIG 293

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + IP  GA ++     +  L+     NA  +     +   +    L+P ++G  + L  +
Sbjct: 294 SFIPIVGALVTGAVAVLLALVANGWVNALVMLGIVLLVQQLESHILQPLVMGKAVALHPV 353

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                +  G    G+ G      ++A+     +
Sbjct: 354 AVILSVAAGSYLAGIPGALFSVPILAVANSAIR 386


>gi|296330760|ref|ZP_06873236.1| putative integral inner membrane protein [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675767|ref|YP_003867439.1| putative integral inner membrane protein [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296152074|gb|EFG92947.1| putative integral inner membrane protein [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305414011|gb|ADM39130.1| putative integral inner membrane protein [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 369

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/344 (17%), Positives = 126/344 (36%), Gaps = 19/344 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFA-------PVLSALIIGFTSWPIYSSFISKKEESSTF 61
           Q +   +I+++     +  + F         P+L A I+ F   P+      K       
Sbjct: 12  QILFVLLIIYVATKVSFVFQPFIVFISTLFFPMLIAGILYFIFNPVVRLLEKKIPR---- 67

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
                T+S++ ++++ +  L +        + S+V     +     + +  +   +  S+
Sbjct: 68  -----TLSILLIYLLFIGLLAFVSASVGPVITSQVTGLFNNLPDYIKQIQSLTKDLSHSQ 122

Query: 122 LWTKHLSHPQSLKILSETFLKT---NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            +T  ++         E  L +   N    I    S    +  +  L II +   LF+  
Sbjct: 123 WFTWMMNQDYVSISKIEQSLTSFLQNLPQNITSSLSAVFGVVTNITLVIITVPFILFYML 182

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +DG         +    +     KI + +   + + F G  +I +  G      Y +AG+
Sbjct: 183 KDGHRFPHLAVKILPASYRTEGLKIFKDLSDTLAAYFQGQLLICLFVGTACFIGYLIAGL 242

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + LG++ AI  +IP   P    A ++ +    +   A    +   I   +    L P
Sbjct: 243 PYALILGIVMAITNIIPYVGPFLGAAPAVIVGFMDSPAKALFAIIVVVIVQQLDGNLLSP 302

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            ++G  +    L     L+G     G+LG+ +   + A++   +
Sbjct: 303 LVIGKRLNTHPLTIILLLIGAGSFGGILGMILAVPVYAVVKAFF 346


>gi|315641494|ref|ZP_07896566.1| conserved hypothetical protein [Enterococcus italicus DSM 15952]
 gi|315482782|gb|EFU73306.1| conserved hypothetical protein [Enterococcus italicus DSM 15952]
          Length = 391

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/343 (13%), Positives = 124/343 (36%), Gaps = 12/343 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F        L     P + A+++ +   P+             +   +  ++V+ L +
Sbjct: 37  ISFFFTPFAIILFAILPPAIFAIVLYYMFHPLVHQLERFLP--RIWAVSLLFLAVIALLV 94

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +  + +F     ++ +L+ +              +  +    +A   +   ++  QS   
Sbjct: 95  LGGVLIFPSIQEQLHQLIDEFPTIFSD-------VQQLVQNFFAKTPFADAINQSQSSLN 147

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI---IALFFFYRDGFSISQQLDSLG 192
              + +     +++ + A   G +F     ++I ++   I  FF  +D     +    + 
Sbjct: 148 EVWSKVGNFLENYLQKGAQGVGSVFSAVSTTLITLVTGPIIAFFLLKDNHRFYETSKKIL 207

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             +      +I++IV + I +   G  I+++  G++    + L G+P    L +   I+ 
Sbjct: 208 PPVMRKDANEIAQIVNQQIGAYLKGQIILSVILGIMYWPFFLLIGLPFSGILAIAAGILC 267

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +IP   P       + + ++ +   A    +       +    + P ++G  +++  +  
Sbjct: 268 IIPYIGPFVVFLPGLIIALQVSWMMAIKFLIVWFAVQAVHGHLVVPRVMGDKLQIHPVTI 327

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            F L+      GL+G+  G  +   I V+        K    +
Sbjct: 328 IFVLLVMAELFGLVGVIFGIPIYCFIKVLVIYLFRRFKRRYNR 370


>gi|321312725|ref|YP_004205012.1| putative integral inner membrane protein [Bacillus subtilis BSn5]
 gi|291485630|dbj|BAI86705.1| hypothetical protein BSNT_04678 [Bacillus subtilis subsp. natto
           BEST195]
 gi|320018999|gb|ADV93985.1| putative integral inner membrane protein [Bacillus subtilis BSn5]
          Length = 369

 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 60/344 (17%), Positives = 126/344 (36%), Gaps = 19/344 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFA-------PVLSALIIGFTSWPIYSSFISKKEESSTF 61
           Q +   +I+F+     +  + F         P+L A I+ F   P+      K       
Sbjct: 12  QILFVLLIIFVATKVSFVFQPFIVFISTLFFPMLIAGILYFIFNPVVRLLEKKIPR---- 67

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
                T+S++ ++++ +  L +        + S+V     +     + +  +   +  S+
Sbjct: 68  -----TLSILLIYLLFIGLLAFISASVGPIITSQVTGLFNNLPDYIKQIQALTKDLSHSQ 122

Query: 122 LWTKHLSHPQSLKILSETFLKT---NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            +T  ++         E  L +   N    I    S    +  +  L II +   LF+  
Sbjct: 123 WFTWMMNQDYVSISKIEQSLTSFLQNLPQNITSSLSAVFGVVTNITLVIITVPFILFYML 182

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +DG         +    +     KI + +   + + F G  +I +  G      Y +AG+
Sbjct: 183 KDGHRFPHLAVKILPASYRTEGLKIFKDLSDTLAAYFQGQLLICLFVGTACFIGYLIAGL 242

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + LG++ AI  +IP   P    A ++ +    +   A    +   I   +    L P
Sbjct: 243 PYALILGIVMAITNIIPYVGPFLGAAPAVIVGFMDSPAKALFAIIVVVIVQQLDGNLLSP 302

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            ++G  +    L     L+G     G+LG+ +   + A++   +
Sbjct: 303 LVIGKRLNTHPLTIILLLIGAGSFGGILGMILAVPVYAVVKAFF 346


>gi|42782011|ref|NP_979258.1| hypothetical protein BCE_2955 [Bacillus cereus ATCC 10987]
 gi|42737935|gb|AAS41866.1| membrane protein, putative [Bacillus cereus ATCC 10987]
          Length = 373

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/330 (16%), Positives = 126/330 (38%), Gaps = 5/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P+L AL + F   P+      KK        ++  + ++ L  V +  +    
Sbjct: 47  FISTLFFPILIALFLYFIFNPVLVFLEEKKVPR-NLAILLLYLFIITLTAVGVGVVVPTI 105

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +LV  +    + G     ++ D+        L T++    ++++  +  +LK + 
Sbjct: 106 SQQLMDLVKNMPGYIKEG---KLYIQDLSHHRLFEWLSTQNYVSIETIEKNAIEYLK-DI 161

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + I   A+    I  +  L I  +   LF+ ++DG +   +  SL    +     +I +
Sbjct: 162 PNTITSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPGKAVSLLPESYREEGLRIIK 221

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              + + +   G  ++ I  G      Y +  +P    LG+I A   +IP   P    A 
Sbjct: 222 ETNETLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIPNLGPFIGAAP 281

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A  + +   I        + P ++   + +  L     ++G     G+
Sbjct: 282 AVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIILILGVGNFAGI 341

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G+ +   + A+   +    +   K  +  
Sbjct: 342 IGMILAVPVYAVTKTVVSNLVRLFKTKRSN 371


>gi|118478248|ref|YP_895399.1| permease [Bacillus thuringiensis str. Al Hakam]
 gi|118417473|gb|ABK85892.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
           Hakam]
          Length = 373

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/330 (16%), Positives = 127/330 (38%), Gaps = 5/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P+L AL + F   P+      KK        ++  + ++ L  V +  +    
Sbjct: 47  FISTLFFPILIALFLYFIFNPVLVFLEDKKVPR-NLAILLLYLFIITLTAVGVGVVVPTI 105

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +LV  +    + G     ++ D+        L T++    ++++  +  +LK + 
Sbjct: 106 SQQLMDLVKNMPGYIKEG---KVYIQDLSHHRLFEWLSTQNYVSIETIEKNAIEYLK-DI 161

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + +   A+    I  +  L I  +   LF+ ++DG +   +  SL    +     +I +
Sbjct: 162 PNTLTSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPGKAVSLLPESYREEGLRIIK 221

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              + + +   G  ++ I  G      Y++  +P    LG+I A   +IP   P    A 
Sbjct: 222 ETNETLSAYIQGQALVCIFVGAFTFIGYFIIDLPYAFVLGIIAAFTNIIPNLGPFIGAAP 281

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A  + +   I        + P ++   + +  L     ++G     G+
Sbjct: 282 AVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIILILGVGNFAGI 341

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G+ +   + A+   +    +   K  +  
Sbjct: 342 IGMILAVPVYAVTKTVVSNLVRLFKTKRSN 371


>gi|319790230|ref|YP_004151863.1| protein of unknown function UPF0118 [Thermovibrio ammonificans
           HB-1]
 gi|317114732|gb|ADU97222.1| protein of unknown function UPF0118 [Thermovibrio ammonificans
           HB-1]
          Length = 353

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/335 (12%), Positives = 107/335 (31%), Gaps = 5/335 (1%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +++  L+ LK    P   A  + +   P++  F    + +    A     ++  +  +
Sbjct: 14  IVVLIALLFLLKPAVMPFFIASTVAYLFHPLFGFFKKSFKGNVKLAAASTLAAIGLVIFI 73

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L  +      +++  ++ +    Q    V         G    + +  +      +   
Sbjct: 74  TLFIILPTIFEQVQSFITYLPTLMQKLDAVIYK----TFGEHLLKRFHFNAEGFHEIIKE 129

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
             + L    I  +           L   +++  +    ++F   G  + +          
Sbjct: 130 LYSKLGNLPIGNLLSKLFSGVFSILSILINLFVIPFLTYYFLTTGDKVLELYIKTAPKRI 189

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
            A  K +   V   + S  LG   +A+  G+ L    WL  +   + +G I  ++ MIP 
Sbjct: 190 QAELKALIDKVHSSLSSYLLGQVAVAVFVGVYLSVGLWLVKIKYALLIGFIAGVLNMIPY 249

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G         +        ++A    L   +    ++  + P ++     +  +     
Sbjct: 250 VGFFSGLIPSLLLAAFDNGTWSAVIGVLIVFLTEVGLENLIYPLVMSRTTGINPILILLA 309

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
              G    G LG+ I   +  +   I++  +   +
Sbjct: 310 TFVGGYAGGFLGIVIAVPVAVMAVPIFESFLEKKE 344


>gi|314933536|ref|ZP_07840901.1| putative membrane protein [Staphylococcus caprae C87]
 gi|313653686|gb|EFS17443.1| putative membrane protein [Staphylococcus caprae C87]
          Length = 404

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/353 (15%), Positives = 133/353 (37%), Gaps = 14/353 (3%)

Query: 11  IMRWMIMFIILVSLYFLKGFF-------APVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           ++  +++FI     Y  + F        AP++ +LI+ +   P+ +     +        
Sbjct: 39  VLLGIVIFIFDKVSYVFEPFIIVFNTIAAPIIVSLILFYLFNPLVNLMERYRIPR----- 93

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI-PVPRWLSDIPGGMWASEL 122
           ++    +    +  +  +    +  +   +   +  + H +  + + +  I    + S  
Sbjct: 94  LLGITIIYVAIVGIITLIVNLLIPIIGSQIEGFIKNSPHYLNKITQSVEKITTNSFLSSY 153

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            ++     +S +    + L      F P+ AS F     +  + I+     LFF  +DG 
Sbjct: 154 MSQVNDWLESAQKKIPSMLSEYFDGFGPKLAS-FAEAVSNVGVVIVTTPFILFFMLKDGH 212

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                   +    F   +  +   +   + S   G  I++   G++L   Y + G+   +
Sbjct: 213 RFKDYSTKIMPPKFRKDFHDLLEKMSVQVGSYIQGQIIVSFCIGVLLLIGYSIIGLKYPL 272

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L  I A+ +++P   P    + +I + I  + +    L +   +  F     + P ++G
Sbjct: 273 VLASIAAVTSVVPYLGPTIAISPAIVIAIITSPWMLLKLVIVWTLVQFFEGHFISPNVMG 332

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             +K+  L   F L+     M ++G+ IG  L A++ V+     +  K    +
Sbjct: 333 KTLKIHPLTIIFILLCAGNLMNVVGVIIGIPLYAVLKVLVSHLFLLFKRRYNR 385


>gi|295695749|ref|YP_003588987.1| protein of unknown function UPF0118 [Bacillus tusciae DSM 2912]
 gi|295411351|gb|ADG05843.1| protein of unknown function UPF0118 [Bacillus tusciae DSM 2912]
          Length = 355

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/317 (17%), Positives = 124/317 (39%), Gaps = 17/317 (5%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            P + ALII +   P+  + + ++               + + I+  +FL    +  ++ 
Sbjct: 45  TPFVVALIISYLLNPVVEALVKRRVPRG-----------ISILIIYAIFLLISAVAAVQG 93

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN---GIDF 148
           + + V         +P  +  I    W +EL  +    P  ++   E  L         F
Sbjct: 94  IPALVEQVKALAANLPETVHRI--DQWLNELARQTRYLPDGIQQAVENHLNQLERWAGQF 151

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           + +  +  G   +   LS   +   +F+  +D   + + + SL       +WKK+ + + 
Sbjct: 152 LGQVVASLGA-TVGQVLSAFVVPFLVFYLLKDLKMVERVVLSLAPREQRDFWKKLLQEID 210

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
             +     G  ++    G++  + Y + G+P  + +  I A+  +IP   P    A +  
Sbjct: 211 DALGRYVRGQLLVMALVGVLTYAGYLIIGLPFSLLMASIVAVANIIPYVGPFIGLAPAAL 270

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           + +  +   A  + L   I   I    + P +VG  + +  L   F L+ G +  G+ G+
Sbjct: 271 IGLTISPAMALKVLLVNLIVQQIESNFISPAVVGRSLDIHPLAIIFALLLGGQLAGIAGM 330

Query: 329 FIGPVLMALIAVIWKES 345
                ++A++ VIW+  
Sbjct: 331 VFAVPVLAVLRVIWQHW 347


>gi|242373654|ref|ZP_04819228.1| permease [Staphylococcus epidermidis M23864:W1]
 gi|242348622|gb|EES40224.1| permease [Staphylococcus epidermidis M23864:W1]
          Length = 404

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/358 (15%), Positives = 130/358 (36%), Gaps = 18/358 (5%)

Query: 10  GIMRWMIMFIILVSL----YFLKGFF-------APVLSALIIGFTSWPIYSSFISKKEES 58
           G+   +++ I++       Y  + F        AP++ +L++ +   PI +     +   
Sbjct: 34  GLTALVLLGIVIFIFDKVSYVFEPFIIVFNTIAAPIIVSLVLFYLFNPIVNLMERYRIPR 93

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGM 117
                ++    +    +  +  +    +  +   V   +  + H +  + + +  I    
Sbjct: 94  -----LLGITIIYVAIVGIITLIVNLLIPLIGSQVESFIKNSPHYLSKITQSVDKITNNS 148

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
             S    +     +S +    + L      F  + AS F     +  + I+     LFF 
Sbjct: 149 LLSGYMGQINDWLESAQKKIPSMLSDYFDGFGSKLAS-FAEAVANVGVVIVTTPFVLFFM 207

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            +DG         +    F   +  +   +   + S   G  I++   G++L   Y + G
Sbjct: 208 LKDGHRFKDYTTKIMPPKFRKDFHDLLEKMSVQVGSYIQGQIIVSFCIGVLLFIGYSIIG 267

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           +   + L  I A+ +++P   P    + +I + I  +      L +   +  F     + 
Sbjct: 268 LKYALVLASIAAVTSVVPYLGPTIAISPAIVIAIITSPLMLLKLAIVWTLVQFFEGHFIS 327

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           P ++G  +K+  L   F L+     MG++G+ IG    A++ V+     +  K    +
Sbjct: 328 PNVMGKTLKIHPLTIIFILLCAGNLMGVVGVIIGIPFYAVLKVLVSHIFLLFKRRYNR 385


>gi|16080231|ref|NP_391058.1| integral inner membrane protein [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221311123|ref|ZP_03592970.1| hypothetical protein Bsubs1_17271 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315450|ref|ZP_03597255.1| hypothetical protein BsubsN3_17187 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320366|ref|ZP_03601660.1| hypothetical protein BsubsJ_17155 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324650|ref|ZP_03605944.1| hypothetical protein BsubsS_17306 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|8928521|sp|O32095|YUEF_BACSU RecName: Full=UPF0118 membrane protein yueF
 gi|2635675|emb|CAB15168.1| putative integral inner membrane protein [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 369

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 59/344 (17%), Positives = 126/344 (36%), Gaps = 19/344 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFA-------PVLSALIIGFTSWPIYSSFISKKEESSTF 61
           Q +   +I+F+     +  + F         P+L A I+ F   P+      K       
Sbjct: 12  QILFVLLIIFVATKVSFVFQPFIVFISTLFFPMLIAGILYFIFNPVVRLLEKKIPR---- 67

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
                T+S++ ++++ +  L +        + ++V     +     + +  +   +  S+
Sbjct: 68  -----TLSILLIYLLFIGLLAFISASVGPIITAQVTGLFNNLPDYIKQIQALTKDLSHSQ 122

Query: 122 LWTKHLSHPQSLKILSETFLKT---NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            +T  ++         E  L +   N    I    S    +  +  L II +   LF+  
Sbjct: 123 WFTWMMNQDYVSISKIEQSLTSFLQNLPQNITSSLSAVFGVVTNITLVIITVPFILFYML 182

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +DG         +    +     KI + +   + + F G  +I +  G      Y +AG+
Sbjct: 183 KDGHRFPHLAVKILPASYRTEGLKIFKDLSDTLAAYFQGQLLICLFVGTACFIGYLIAGL 242

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + LG++ AI  +IP   P    A ++ +    +   A    +   I   +    L P
Sbjct: 243 PYALILGIVMAITNIIPYVGPFLGAAPAVIVGFMDSPAKALFAIIVVVIVQQLDGNLLSP 302

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            ++G  +    L     L+G     G+LG+ +   + A++   +
Sbjct: 303 LVIGKRLNTHPLTIILLLIGAGSFGGILGMILAVPVYAVVKAFF 346


>gi|116492957|ref|YP_804692.1| permease [Pediococcus pentosaceus ATCC 25745]
 gi|116103107|gb|ABJ68250.1| Predicted permease [Pediococcus pentosaceus ATCC 25745]
          Length = 380

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 108/320 (33%), Gaps = 4/320 (1%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P++ A ++ +   P+      + +        I  V +  L I  ++ +      +   L
Sbjct: 60  PIILAGVLYYLINPLVDKLEQRFKLKRVLSITIIFVLITILIIAGIVSVIPVIREQSAAL 119

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
           +         G+     +          +L  +      +              + +   
Sbjct: 120 IKNWPDYWNSGV---EKVEGFLKDPRLGDLKKQIDGIGSNTVQSWSKKATEFVDNTVTSL 176

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
            S  G+I     + II M   LF+  +DG  +   +  +        + +I   +   + 
Sbjct: 177 GSVIGLIT-KIVIGIITMPFILFYLLKDGHRLPHFIAQVFPVKRRDGFIQILTEINTQLS 235

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
               G  I+A    ++    Y + G+   + LGV    + +IP          SI +   
Sbjct: 236 QYIRGQLIVAFFVAVIFFIGYSIIGLKFALTLGVAAGFLNLIPYLGSFLAMVPSIVIGAF 295

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
            +      + +   IE  I  + + P ++G  + +  +     L+   +  GL+G+  G 
Sbjct: 296 VSPIMLVKVLIVFVIEQTIEGRFVSPLVLGSNLDIHPVTILVVLLASGQIFGLVGVIFGI 355

Query: 333 VLMALIAVIWKESIMAIKEN 352
              A++ V++     A K+N
Sbjct: 356 PAYAVLKVLFIHGFRAFKKN 375


>gi|241889494|ref|ZP_04776793.1| conserved hypothetical protein [Gemella haemolysans ATCC 10379]
 gi|241863801|gb|EER68184.1| conserved hypothetical protein [Gemella haemolysans ATCC 10379]
          Length = 382

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/334 (14%), Positives = 136/334 (40%), Gaps = 19/334 (5%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +     P++ A +  +   P+ + F  K   S    +++A    + L ++ ++ +    
Sbjct: 61  IVSSIITPIIVAYVFYYMLNPLVNFFEKKM--SRFIASLLAIFVGIILILIVIIGVVPII 118

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + + + L++           +PR++  + G +   E ++ +      ++ ++     +  
Sbjct: 119 VEQTQNLIT----------ALPRYIEVVKGYL---ETYSDNAYVQVVVEYVNNNLNVSKI 165

Query: 146 IDFIPRFASRFGMIFLDYCLS----IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            + +   A+      +    S    ++ M   LFF  +D    ++ + SL          
Sbjct: 166 SEKLVSVATSIAQGVVSSISSTASVLVTMPFVLFFLLKDASHFNKFVISLLPKKLKQPVA 225

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +    +   + S   G  ++++  G++L   Y + G+    +L  I A ++++P   P+ 
Sbjct: 226 ETIDEIDGKVGSYIQGQMLVSLCIGVMLFIGYNIIGLHYAFSLATIAAFLSIVPYLGPVI 285

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               ++ +    +      + +   I  F+    + P ++G  + +  L   F ++ GV 
Sbjct: 286 AITPAMLVAASTSWIMVLKMLVVWGIVQFLEGNIISPNIMGRSMNMHPLTVIFVILIGVN 345

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             G++G  IG  + +++ V+  + +++I++   K
Sbjct: 346 IAGVVGAIIGIPVYSILKVLVGKLLLSIRDRYNK 379


>gi|73670404|ref|YP_306419.1| hypothetical protein Mbar_A2944 [Methanosarcina barkeri str.
           Fusaro]
 gi|72397566|gb|AAZ71839.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 368

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/342 (14%), Positives = 122/342 (35%), Gaps = 21/342 (6%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
            +   L      ++  ++  + + PI   F   ++        +  +       +P++F+
Sbjct: 32  FAFLILLPLADGIVLGIVFAYIARPIRVKFKKHRK--------VGALVASLCIFIPIVFI 83

Query: 82  FYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
              G++E+   +S V+         +  +++ +       E          ++  L  + 
Sbjct: 84  VGAGIVEILNQISWVIEHQTAVAAAILNFINSLNIPDKIIESINS------AIWDLFTSL 137

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           L   G   +  +A   G+ F+++ +SIIF     +F   DG  +      +    +    
Sbjct: 138 LPAVGSIGLLSYAQSIGLFFINFLISIIFC----YFVLADGDRLYCAFLGVIPKEYKGVV 193

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP- 259
              +  +  +++  F+G    A+   +     ++  G    +AL  +  + ++IP  A  
Sbjct: 194 NCYAHHLDIILKGVFIGNAYSALIVSVTSVFVFYSFGFTHVLALATLIFVASIIPLFAGY 253

Query: 260 ISFTAVSIYLLI-KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           +    +++      G    A    +   I     +  LRP+L     K+  +      +G
Sbjct: 254 MVLVPLALMRYFESGFRSAAIFFTVSSIIIYGPPELILRPYLTSLKSKIHPMLLMLAFLG 313

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           G    G+ G F  P+L+  +   ++           +  ++F
Sbjct: 314 GAFVGGIAGFFAAPILLGALVAAYRVYQDHTNPEITETCADF 355


>gi|227552502|ref|ZP_03982551.1| permease [Enterococcus faecium TX1330]
 gi|257888263|ref|ZP_05667916.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257896848|ref|ZP_05676501.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|257899696|ref|ZP_05679349.1| conserved hypothetical protein [Enterococcus faecium Com15]
 gi|293378524|ref|ZP_06624687.1| putative sporulation integral membrane protein YtvI [Enterococcus
           faecium PC4.1]
 gi|293571451|ref|ZP_06682478.1| transport protein [Enterococcus faecium E980]
 gi|227178352|gb|EEI59324.1| permease [Enterococcus faecium TX1330]
 gi|257824317|gb|EEV51249.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257833413|gb|EEV59834.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|257837608|gb|EEV62682.1| conserved hypothetical protein [Enterococcus faecium Com15]
 gi|291608456|gb|EFF37751.1| transport protein [Enterococcus faecium E980]
 gi|292642853|gb|EFF61000.1| putative sporulation integral membrane protein YtvI [Enterococcus
           faecium PC4.1]
          Length = 388

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/317 (14%), Positives = 114/317 (35%), Gaps = 5/317 (1%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P++ A I+ +   P+   F  +K       ++I    ++   IV    +    + E  + 
Sbjct: 60  PIILAGILYYLMNPVVDYFEKRKVPR--LYSIIGLFVLVVALIVWGSVVIIPKIQE--QT 115

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
           VS +    Q+   +   L++I      ++   +  +        +   ++      +   
Sbjct: 116 VSFISNFPQYVDTIDNKLTEILRDPLFNQFREQLETAGDKFMNSAGDMIQDISKSTVQSL 175

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
            S  G +     ++++ M   LF+  +DG  ++                 +   +   + 
Sbjct: 176 GSFVGAVAT-ILVALLTMPFILFYLLKDGKRLAPYFVKFLPTRMQKPTLNVLSEMNSQVS 234

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
           S   G   +A    ++    + + G+   V LG+I   + +IP          +I+L I 
Sbjct: 235 SYIRGQLTVAFAVAIMFMIGFAIIGLEYAVTLGIIAGFLNLIPYLGSFLAMIPAIFLAIV 294

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
              F    + +  A+E  I  + + P ++G  + +  +     L+   +  G++G+ +G 
Sbjct: 295 AGPFMIIKVLIVFAVEQTIEGRLISPLVLGNQLAIHPVTILLVLLTSGKLFGIVGVILGI 354

Query: 333 VLMALIAVIWKESIMAI 349
            + A   V+        
Sbjct: 355 PVYAAAKVVITHVFEWY 371


>gi|254457126|ref|ZP_05070554.1| acid membrane antigen A [Campylobacterales bacterium GD 1]
 gi|207085918|gb|EDZ63202.1| acid membrane antigen A [Campylobacterales bacterium GD 1]
          Length = 349

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 58/357 (16%), Positives = 134/357 (37%), Gaps = 25/357 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           + PQ  +  +    +         F   +  A ++  ++  I    +SK  +S    A+I
Sbjct: 1   MKPQYFVAILFATSLYWMYLLYAPFLLTITIAALLAVSTSNIQE-LLSKLFKSRFSAALI 59

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           ++  +  LF  PL +      +++  +  +V +  +  + +   + + P  +   + +  
Sbjct: 60  SSFLMAILFFAPLGYFLATLTIKLNSIDPQVFVGIE--VYIRELIKNPPEYLMFIKPYA- 116

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                       +                  G     +  +   +II  FF   +G +I 
Sbjct: 117 --------VDALKDLNVNALTSKAISLTGTIGSFSAGFLKNAFLIIIFYFFAQYNGTNII 168

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + L  + +         +++ +  V+   F  + + A+ EG++ G A    G  + +  G
Sbjct: 169 EFLKRVVQMSVEETT-TLAKELSSVMSVVFYSIIVTAMLEGVLFGVAVSFMGY-NGLLFG 226

Query: 246 VITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGG 303
           ++    ++IP  G  + +    +Y    G+  +A  + L+  I + I+ D  ++P ++  
Sbjct: 227 IMYGFASLIPVVGGVLMWLPFMLYEFSIGDSSSAIFIALYSVIVISIIADTFVKPLIIKE 286

Query: 304 ---------PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
                      ++  L  FF ++ G+ T G  G+ +GP + A    I K      KE
Sbjct: 287 INNRLLKEDDTRINELVIFFAIIAGLATFGFWGMILGPAITAFFLTILKLFEARTKE 343


>gi|326381378|ref|ZP_08203072.1| hypothetical protein SCNU_00465 [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199625|gb|EGD56805.1| hypothetical protein SCNU_00465 [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 435

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/334 (15%), Positives = 115/334 (34%), Gaps = 17/334 (5%)

Query: 14  WMIMFIILVSLYFLKGFFA---PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            ++M  +    + L  F+    PV+  +++    WP     +SK+         +  ++ 
Sbjct: 70  LLVMAFLFALFWVLSKFWVILLPVILGIVVATVLWPPVRWLLSKRVP-PAAATFVVLLAA 128

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +    +  +    + +  +L  + V   +    V  W+   P                
Sbjct: 129 IAVIGGVVALIVPSVVDQAPQLADRAVDGVKR---VQDWIQGPP--------LNVGDDQL 177

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            SL     + L+ +    I         +     +++   ++ LFFF +DG      LD 
Sbjct: 178 TSLVNEITSKLQKSAST-IATGVFNGVGVATSALITLFTTVVLLFFFLKDGPKFLPWLDR 236

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                   +  +I R + + +        I++  +  ++G    +  VP    L VIT +
Sbjct: 237 TMGKEGAVHVSEILRRMWETLGGFIRTQAIVSFVDAALIGIGLLILDVPLAGVLIVITFM 296

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
              IP  GA ++     +  L+   + +A  +         +    L P+L    + L  
Sbjct: 297 GGFIPIVGAFVAGALAVLIALVSNGLTSALIVLGIILAVQQLEGNVLSPWLQAKSMNLHA 356

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +     +  G    G+ G F+     + +AV  +
Sbjct: 357 VIVLLSVTLGGSLFGITGAFLAVPAASCLAVALR 390


>gi|212223531|ref|YP_002306767.1| hypothetical membrane protein, conserved [Thermococcus onnurineus
           NA1]
 gi|212008488|gb|ACJ15870.1| hypothetical membrane protein, conserved [Thermococcus onnurineus
           NA1]
          Length = 333

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 60/343 (17%), Positives = 132/343 (38%), Gaps = 30/343 (8%)

Query: 9   QGIMRWMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +  +   I  I+L  ++  +    +P++ A+ + +  +P +     +        A   T
Sbjct: 4   EAAIWIAISLIVLYLVWETVSPILSPIIIAVTLAYILYPFHERLARRMGNR--LSAFTMT 61

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +         L  L ++ ++     ++ V  +  H I                  W    
Sbjct: 62  IL--------LTILTFFFIIGFALWMNDVKHSLAHYID-------------GFFTWLLTF 100

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           + P SL  L +  L  +       +   +        L  I M+ A +    +  +I ++
Sbjct: 101 NLPPSLYELVQK-LAEDIPKRFEEYILGYTYSLPKLSLQAIVMVFAFYGILVNARAIKRE 159

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV---PSHVAL 244
           + SL          K+     + + +   G   +++ +G+   + + L G+      +A 
Sbjct: 160 VYSLLPSENRELAIKLLERAGETLHNLLRGWLSLSVLKGIFAAAGFLLFGMAETGGAIAA 219

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLVG 302
           G+ T I  ++P  G  + + A ++YL+  GNI        +G + +  + D  LRP +  
Sbjct: 220 GIFTVIFELLPVFGGWVVWLAGTVYLINGGNILWGILFAFYGIVFISPLPDFLLRPRIAV 279

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
               +  L +  G+ GG    G +G+ IGP+ ++L+A + +E 
Sbjct: 280 RERGVNALVSLVGIFGGFLAFGFVGIIIGPLALSLLATLVEEW 322


>gi|52787063|ref|YP_092892.1| YueF [Bacillus licheniformis ATCC 14580]
 gi|163119626|ref|YP_080468.2| hypothetical protein BL02615 [Bacillus licheniformis ATCC 14580]
 gi|319647592|ref|ZP_08001811.1| hypothetical protein HMPREF1012_02850 [Bacillus sp. BT1B_CT2]
 gi|52349565|gb|AAU42199.1| YueF [Bacillus licheniformis ATCC 14580]
 gi|145903136|gb|AAU24830.2| hypothetical protein BL02615 [Bacillus licheniformis ATCC 14580]
 gi|317390318|gb|EFV71126.1| hypothetical protein HMPREF1012_02850 [Bacillus sp. BT1B_CT2]
          Length = 369

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 51/311 (16%), Positives = 112/311 (36%), Gaps = 6/311 (1%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P+L A I+ F   PI      K     T   ++  +  +      L  +      ++ 
Sbjct: 41  FTPILIAGILYFIFNPIVRLLEKKLP--RTLSILLIYLVFVAFIGFVLSAVGPVFTKQVT 98

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           +L + +    +    +  ++  +    W + +  +       ++     +L +   +   
Sbjct: 99  DLFNNIPSYVK---QIQIFIKQMSNSQWFTWIMNQDFVSVAKIESSIGEYLTSLPENITG 155

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              S FG++  +  L+ + +   LF+  +DG         +    +     KI + + + 
Sbjct: 156 SLTSVFGVVT-NIALTAVTVPFILFYMLKDGHRFPNLAVKILPDKYKNEGLKIFKDLYET 214

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + +   G  I+ +  G      +W+AGV   + LG+I A+  +IP   P    A ++ + 
Sbjct: 215 LAAYIQGQLIVCLFVGTACFIGFWIAGVKYALILGLIIAVTNIIPYVGPFLGAAPAVIIA 274

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +   A    +            L P ++G  +    L     L+G     G+LG+ +
Sbjct: 275 FLDSPTKALIALIIVVAVQQTDGNLLSPLIIGRRLNTHPLTIILLLIGAGSFGGILGMIL 334

Query: 331 GPVLMALIAVI 341
                AL+   
Sbjct: 335 AVPAYALLKAF 345


>gi|74318686|ref|YP_316426.1| phosphoribosylaminoimidazole-succinocarboxamide synthase
           [Thiobacillus denitrificans ATCC 25259]
 gi|74058181|gb|AAZ98621.1| phosphoribosylaminoimidazole-succinocarboxamide (SAICAR) synthetase
           [Thiobacillus denitrificans ATCC 25259]
          Length = 665

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 120/331 (36%), Gaps = 13/331 (3%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +  + +Y L     P L+  ++ +   P+     +++   +   A++  ++ + LF +
Sbjct: 18  LLVAGLLIYLLGPILTPFLAGALLAYIFDPLVDRLEARRIPRAAGTAIVIVLAGLILFGL 77

Query: 77  PLLFLFYYGMLEMKELVSKVVLA-NQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            LL        +  EL  +V    +        W+                  H   LK 
Sbjct: 78  -LLVALPLFQGQFAELSQRVPAGLDLLQTRFLPWVER--------TFGIAVSPHLDGLKA 128

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                    G +++PR  +    I     ++++ + + +F+  +D   I  ++ +L    
Sbjct: 129 WLTEKATQQGANWLPRLQTGALAII-GALVNLLLIPVVMFYLLKDWDVIVGRVAALAPRP 187

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +    ++I   +  V+     G   + I   +    A W  G+   + +GV+T +++ +P
Sbjct: 188 WLPAARRIGSAMNAVVGEFLRGQLAVMITLSVYYSVALWAVGLDYALPIGVLTGVLSFVP 247

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--DKTLRPFLVGGPIKLPFLPTF 313
                    +++ + +          ++ G            + P LVG  + L  +   
Sbjct: 248 FLGFGLGMVLALLVALLQYPDWVGVAWVAGVYLAGQALESYVVTPRLVGERVGLHPVAVI 307

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           F L    +  G +G+ +   L A + V  +E
Sbjct: 308 FALAAFGQLFGFVGVLLAVPLAATLLVGLRE 338


>gi|254172650|ref|ZP_04879325.1| membrane protein [Thermococcus sp. AM4]
 gi|214033579|gb|EEB74406.1| membrane protein [Thermococcus sp. AM4]
          Length = 329

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/351 (15%), Positives = 129/351 (36%), Gaps = 28/351 (7%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M N   +   + + I+ +    +    +P++ AL + + ++PI+     K        A 
Sbjct: 1   MRNETLVWAIVTVVILYLVWLVVSPVVSPIILALAVAYVTYPIHERLSPKIGRKK--AAF 58

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           + T  +  L  + LL    +      ++V  + ++                       W 
Sbjct: 59  LLTAVIAVLSFLFLLGFVLWINDVKYQIVRYMEISFN---------------------WL 97

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           + ++          T +       I  +   +        L I  M+   +    +   I
Sbjct: 98  QSVTISSQRINEVLTAITEGVRSRIEAYVISYTYSIPKLALEIFVMLFVYYGTLVNAEEI 157

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV---PSH 241
            ++L +L       +  ++       + +       +++ +G      +W   +      
Sbjct: 158 GRELYNLLPPQRKEFGIRLIEAARYTLDTLLKSWLTLSVLKGSATALGFWAFRIAPTSGA 217

Query: 242 VALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPF 299
           +ALG++TA + ++P  G  + +    +YL+   +   A    ++  + +  + D  L P 
Sbjct: 218 IALGILTAFVELLPFLGGWLIWIPGVVYLVHTSHYVLAFLFAVYSIVFISPLPDFVLAPK 277

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +      L  L +  G+ GG+   GL+G+ IGPV + L+A + +E   A++
Sbjct: 278 MTLRRRGLNALISLLGIFGGLWAFGLVGIIIGPVSLGLLATVIEEWKKAME 328


>gi|227834149|ref|YP_002835856.1| permease of the major facilitator superfamily [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262183363|ref|ZP_06042784.1| permease of the major facilitator superfamily protein
           [Corynebacterium aurimucosum ATCC 700975]
 gi|227455165|gb|ACP33918.1| permease of the major facilitator superfamily [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 411

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 56/344 (16%), Positives = 127/344 (36%), Gaps = 22/344 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLS--------ALIIGFTSWPIYSSFISKKEESST 60
             + +  ++FII+V+   L G+    +         A+++    +P+ +   + K   + 
Sbjct: 39  ISLAKVCLVFIIVVAGVGLAGYLLKFIWVGLLPVILAILVCTVLFPVTNWLRAHKFPRA- 97

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             ++   +  + +       +      +   LVS+        + +     D+P  + A+
Sbjct: 98  LASITTLLGFLAIIGGVFAAMAPVVSSQGASLVSQAEGGLNKLVDMA---KDLPFEIDAA 154

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           ++        Q +   + TF+K    +      S    +     + +  M+   FF  +D
Sbjct: 155 KV--------QEVLDDAMTFIKGQASNIATGVISGV-SMASSIAMELAIMLFVAFFILKD 205

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G      L +   +    +  ++   V   +         +A  +GL++G   W   VP 
Sbjct: 206 GDKFLPWLRTYTGYSAGWHATELLTRVWNTLSGFIQAQAAVAAVDGLLIGLGLWALQVPL 265

Query: 241 HVALGVITAIMAMIPGGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            + +GV+T   + IP    ++  A++ I  L+   +  A        I   +    L+P 
Sbjct: 266 ALVIGVVTFFASFIPVIGAVTAGALAVIIALVSDGLTKALLALALIIIVQQVEGNVLQPM 325

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L    + L        +  G    G++G F+   + A IAV+++
Sbjct: 326 LQSKAMGLHAAMVLLSVTVGSALAGIIGAFLAVPVAATIAVVFR 369


>gi|228901451|ref|ZP_04065636.1| hypothetical protein bthur0014_26410 [Bacillus thuringiensis IBL
           4222]
 gi|228965851|ref|ZP_04126925.1| hypothetical protein bthur0004_26730 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228793842|gb|EEM41371.1| hypothetical protein bthur0004_26730 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228858159|gb|EEN02634.1| hypothetical protein bthur0014_26410 [Bacillus thuringiensis IBL
           4222]
          Length = 373

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 52/330 (15%), Positives = 127/330 (38%), Gaps = 5/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P+L AL + F   P+     +KK        ++  + ++ L  V +  +    
Sbjct: 47  FISTLFFPILIALFLYFIFNPVLIFLENKKVPR-NLAILLLYLFIITLTAVGVGVVVPTI 105

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +LV  +    + G     ++ ++        L T++    ++++  +  +LK + 
Sbjct: 106 SQQLMDLVKNMPGYIKEG---KVYIQELSHHRLFEWLSTQNYVSIETIEKNAIEYLK-DI 161

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + I   A+    I  +  L +  +   LF+ ++DG +   +  SL    +     +I +
Sbjct: 162 PNTITSSATALFGIITNVALVVFTVPFILFYMFKDGHAFPGKAVSLLPESYREEGLRIIK 221

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              + + +   G  ++ I  G      Y +  +P    LG+I A   +IP   P    A 
Sbjct: 222 ETNETLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIPNLGPFIGAAP 281

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A  + +   I        + P ++   + +  L     ++G     G+
Sbjct: 282 AVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIILILGVGNFAGI 341

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G+ +   + A+   +    +   K  +  
Sbjct: 342 IGMILAVPVYAVTKTVVSNLVRLFKTKRSN 371


>gi|326940684|gb|AEA16580.1| hypothetical protein CT43_CH2906 [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 361

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 52/330 (15%), Positives = 127/330 (38%), Gaps = 5/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P+L AL + F   P+     +KK        ++  + ++ L  V +  +    
Sbjct: 35  FISTLFFPILIALFLYFIFNPVLIFLENKKVPR-NLAILLLYLFIITLTAVGVGVVVPTI 93

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +LV  +    + G     ++ ++        L T++    ++++  +  +LK + 
Sbjct: 94  SQQLMDLVKNMPSYIKEG---KVYIQELSHHRLFEWLSTQNYVSIETIEKNAIEYLK-DI 149

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + I   A+    I  +  L +  +   LF+ ++DG +   +  SL    +     +I +
Sbjct: 150 PNTITSSATALFGIITNVALVVFTVPFILFYMFKDGHAFPGKAVSLLPESYREEGLRIIK 209

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              + + +   G  ++ I  G      Y +  +P    LG+I A   +IP   P    A 
Sbjct: 210 ETNETLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIPNLGPFIGAAP 269

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A  + +   I        + P ++   + +  L     ++G     G+
Sbjct: 270 AVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIILILGVGNFAGI 329

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G+ +   + A+   +    +   K  +  
Sbjct: 330 IGMILAVPVYAVTKTVVSNLVRLFKTKRSN 359


>gi|228953248|ref|ZP_04115302.1| hypothetical protein bthur0006_26330 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228959134|ref|ZP_04120833.1| hypothetical protein bthur0005_26260 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229110365|ref|ZP_04239937.1| hypothetical protein bcere0018_26180 [Bacillus cereus Rock1-15]
 gi|228673105|gb|EEL28377.1| hypothetical protein bcere0018_26180 [Bacillus cereus Rock1-15]
 gi|228800523|gb|EEM47441.1| hypothetical protein bthur0005_26260 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228806475|gb|EEM53040.1| hypothetical protein bthur0006_26330 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 373

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 52/330 (15%), Positives = 127/330 (38%), Gaps = 5/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P+L AL + F   P+     +KK        ++  + ++ L  V +  +    
Sbjct: 47  FISTLFFPILIALFLYFIFNPVLIFLENKKVPR-NLAILLLYLFIITLTAVGVGVVVPTI 105

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +LV  +    + G     ++ ++        L T++    ++++  +  +LK + 
Sbjct: 106 SQQLMDLVKNMPGYIKEG---KVYIQELSHHRLFEWLSTQNYVSIETIEKNAIEYLK-DI 161

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + I   A+    I  +  L +  +   LF+ ++DG +   +  SL    +     +I +
Sbjct: 162 PNTITSSATALFGIITNVALVVFTVPFILFYMFKDGHAFPGKAVSLLPESYREEGLRIIK 221

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              + + +   G  ++ I  G      Y +  +P    LG+I A   +IP   P    A 
Sbjct: 222 ETNETLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIPNLGPFIGAAP 281

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A  + +   I        + P ++   + +  L     ++G     G+
Sbjct: 282 AVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIILILGVGNFAGI 341

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G+ +   + A+   +    +   K  +  
Sbjct: 342 IGMILAVPVYAVTKTVVSNLVRLFKTKRSN 371


>gi|163789472|ref|ZP_02183911.1| Putative transport protein [Carnobacterium sp. AT7]
 gi|159875326|gb|EDP69391.1| Putative transport protein [Carnobacterium sp. AT7]
          Length = 422

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 54/320 (16%), Positives = 113/320 (35%), Gaps = 5/320 (1%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            P++ A I+ +   P+      KK      +A I  V    +       +       +  
Sbjct: 83  MPIIFAGILYYLVNPLVDWMERKKIPRVLGIAWIFIVIGALIVWGITTLIPIIQEQTISI 142

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           + +  +  +     +  WL         SE  T+      +L         +        
Sbjct: 143 IENWPIYWDNIVFQIDSWLRS----DVLSEFQTRLTDLNANLLSNVSDQANSVLDTTFTS 198

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
             S  G +  +  ++II M   LF+  +DG S+   +  +          ++   +   I
Sbjct: 199 IGSVVGALT-NVVIAIITMPFILFYLLKDGKSLPYHVMKMIPSKMRGGTYRLLTEINTQI 257

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
                G  ++A   GL+    +   G+   V LGV+   + +IP       T  +I + +
Sbjct: 258 SQYIRGQLMVAFFVGLMFWIGFASIGLEYAVTLGVLAGFLNLIPYLGSFLATVPAIVIAL 317

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
             +      + +  AIE  I  + ++P ++G  +++  L     L+   +  G+ G+ +G
Sbjct: 318 VDSPSMLIKVLIVFAIEQTIEGRVIQPQILGNNLEIHPLTIIIVLLSAGKIFGVPGVILG 377

Query: 332 PVLMALIAVIWKESIMAIKE 351
               A++ VI        K+
Sbjct: 378 IPGYAILKVIVVHFFRWYKD 397


>gi|313681479|ref|YP_004059217.1| hypothetical protein Sulku_0350 [Sulfuricurvum kujiense DSM 16994]
 gi|313154339|gb|ADR33017.1| protein of unknown function UPF0118 [Sulfuricurvum kujiense DSM
           16994]
          Length = 355

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 69/355 (19%), Positives = 131/355 (36%), Gaps = 28/355 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF---- 61
           +     +RWM   I ++ L+    F      AL++     P+Y S  S+ +         
Sbjct: 1   MQQNNFLRWMSFGIFVLILWLFSPFLKSFFVALLLAMAVSPLYRSIKSRIDRYPALVSVA 60

Query: 62  ---LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
               A I ++ +  +  +P+    Y  +    + +  + +          +L+      W
Sbjct: 61  SLVSASIVSIGLSLIIFLPIAIFLYQILDNPAKTLDMIRMIGNKIDSP--YLNLPTFLQW 118

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            S+     L+  ++ K     FL       I  FAS  G +          MI+  FFF 
Sbjct: 119 LSDPLYNLLTQIRNHKDEIIAFLAGWFGSGIKTFASMLGEMA---------MIVIFFFFL 169

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                           L  +  +     +  +    F  +  + I +GL  G        
Sbjct: 170 TWYGRRLLLFLLPIIPLPRSIKRDFLDEMTIMSAVVFYTLVGVMIAQGLAFGIFIAFFEG 229

Query: 239 PSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWG-AIELFIVDKTL 296
            + + LG +T I A+IP  G  + +  V+++  + GNI NA  + L+  A+  F +D  +
Sbjct: 230 YNPLLLGFLTGISAIIPVVGTALVWIPVAVHEYMSGNIVNAFIISLYSWAMMAFFIDNIV 289

Query: 297 RPFLVG--------GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +  ++         G  ++     FF +VGG+ T G  G  +GP ++A      +
Sbjct: 290 KLVILNFVNRSLSIGKRRINEFVIFFAIVGGLATFGFWGFILGPAIVAFAMTTLR 344


>gi|301054426|ref|YP_003792637.1| permease [Bacillus anthracis CI]
 gi|300376595|gb|ADK05499.1| conserved hypothetical permease [Bacillus cereus biovar anthracis
           str. CI]
          Length = 361

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 54/330 (16%), Positives = 127/330 (38%), Gaps = 5/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P+L AL + F   P+      KK        ++  + ++ L  V +  +    
Sbjct: 35  FISTLFFPILIALFLYFIFNPVLVFLEDKKVPR-NLAILLLYLFIITLTAVGVGVVVPTI 93

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +LV  +    + G     ++ D+        L+T++    ++++  +  +LK + 
Sbjct: 94  SQQLMDLVKNMPGYIKEG---KLYIQDLSHHRLFEWLFTQNYVSIETIEKNAIEYLK-DI 149

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + I   A+    I  +  L I  +   LF+ ++DG +   +  SL    +     +I +
Sbjct: 150 PNTITSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPGKAVSLLPESYREEGLRIIK 209

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              + + +   G  ++ I  G      Y +  +P    LG+I A   +IP   P    A 
Sbjct: 210 ETNETLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIPNLGPFIGAAP 269

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A  + +   I        + P ++   + +  L     ++G     G+
Sbjct: 270 AVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIILILGVGNFAGI 329

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G+ +   + A+   +    +   K  +  
Sbjct: 330 IGMILAVPVYAVTKTVVSNLVRLFKTKRSN 359


>gi|242398490|ref|YP_002993914.1| hypothetical protein TSIB_0499 [Thermococcus sibiricus MM 739]
 gi|242264883|gb|ACS89565.1| hypothetical protein TSIB_0499 [Thermococcus sibiricus MM 739]
          Length = 329

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 140/352 (39%), Gaps = 30/352 (8%)

Query: 6   LNPQGIMRWMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +  + ++ +++  IIL  ++  ++     ++ AL + +   P ++    K     +  A+
Sbjct: 1   MRTEHVIWFVVSIIILFVVWKTVEPLITSIIFALTVAYILHPAHTRLAQKIGSRES--AI 58

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           + +  +  L +  +  +  +       LV+ +  +         W   +      ++   
Sbjct: 59  VFSAIMSLLLVGFIFGVALWFRDVTGSLVNYINES-------LEWFISLDLPPDIAK--- 108

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                       S T L     + +  +   + +      L  I  I+  +       S+
Sbjct: 109 ------------SATILFERVSEKLSEYLLSYTLSIPKLLLQAIIFIVVFYGILIHSHSL 156

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL---AGVPSH 241
           S +L SL          ++       + +      ++++ +G++L   +++   A +   
Sbjct: 157 SAELYSLLPEERRDLGIELIEKARDTLNAILRTWLMLSVSKGIILTLGFYVFRVADLSGS 216

Query: 242 VALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPF 299
           +A G++  ++ ++P  G  + +   +IYLL +G IF      ++GA+ +    D T+RP 
Sbjct: 217 IAAGIVCVVLELLPVIGGWLVWLVGAIYLLTQGQIFAGIMFAIYGALLISPGPDITIRPK 276

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           LV    K+       G+ GG+   G+ G+ IGPV + L+  + +E     +E
Sbjct: 277 LVAEGAKMNSALALIGIFGGIMAFGIKGIVIGPVALGLLLTLLEEWKEQKRE 328


>gi|42518755|ref|NP_964685.1| hypothetical protein LJ0830 [Lactobacillus johnsonii NCC 533]
 gi|41583041|gb|AAS08651.1| hypothetical protein LJ_0830 [Lactobacillus johnsonii NCC 533]
          Length = 393

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/328 (15%), Positives = 112/328 (34%), Gaps = 19/328 (5%)

Query: 25  YFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           + L  F       F P+L A I  +   P+      K +       +I  + +  + +  
Sbjct: 44  FVLNPFWTFFNAIFPPILVASIQYYLMDPVVDWMEKKLKVPR----IITIILLFVIVVGG 99

Query: 78  LLFLFYYGM----LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           L+++    +     +   LV       +        +   P          + +S  Q+ 
Sbjct: 100 LIWIINTLIPIIQHQTDSLVKNWPTYWKDAQKGFEKIIRDPRLNGVRGGINQAISDAQTK 159

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
              +      +  +      S    +     ++++     LFF  +DG  ++  +     
Sbjct: 160 MFKT----GQDSFNLALSNLSSAVNVITMIFMTLLTAPFVLFFMLKDGHRLNSYVTKFAP 215

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                 +  +   +   + S   G   +A   G++    Y + G+   + L V+  I+ M
Sbjct: 216 KKLQPSFSSLLSDINGAVASYIRGQITVAFWVGVMFAIGYSVIGLNYGITLAVLAGILNM 275

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP          +I L +  +      + +  AIE  +  + + P ++G  + +  + T 
Sbjct: 276 IPYFGTFIAFIPAIILGLISSPMMLIKVLIVFAIEQTLEGRVISPLVMGNKMNMNPVTTI 335

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             L+G     GL G+     + A+I +I
Sbjct: 336 LLLIGASAVAGLWGVIFAIPVYAVIKII 363


>gi|229918356|ref|YP_002887002.1| hypothetical protein EAT1b_2641 [Exiguobacterium sp. AT1b]
 gi|229469785|gb|ACQ71557.1| protein of unknown function UPF0118 [Exiguobacterium sp. AT1b]
          Length = 389

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/322 (14%), Positives = 112/322 (34%), Gaps = 6/322 (1%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            P++ A +  +    I      + +   T    I  + ++ +F +    L      ++  
Sbjct: 45  VPLIVAGLFFYFLVGIVDFLEKRLKGKRTLAVAITLIGLVLIFTLVFSILGPVLGEQITS 104

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           LV+ +    +        + D    +  +E + + ++    +     T + +   D    
Sbjct: 105 LVNAMPSIAKELQKQAFAVRDT---LLQNEFFARFMAENDEMFRNLTTNITSYLGDLFGN 161

Query: 152 FASRFGMIF---LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
            AS FG +        ++I+ +   L +   DG  +   +  L    +    + I   + 
Sbjct: 162 IASSFGQVVGFVTSAVITIVVIPFMLLYMLLDGKRLPDAIVKLLPSSYEKETRHILHDMH 221

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           + +RS      ++A   G+      W+ GV   + L +   +  +IP   P    A ++ 
Sbjct: 222 ETVRSYVNAQLLVAFFVGITSLIGLWIVGVDYAILLALFMMVTNIIPYVGPFLGAAPAVV 281

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           +    +      + +   +   I    + P + G  +K+  L     L+      G++G+
Sbjct: 282 VAFIQDPIKVLWVIVVIIVVQQIESNVISPLIQGKSLKVHPLTIIIVLLVAGNLAGIIGM 341

Query: 329 FIGPVLMALIAVIWKESIMAIK 350
            I     A+   + +  +   K
Sbjct: 342 LIAVPFYAVAKTVVQNIVRIYK 363


>gi|256825244|ref|YP_003149204.1| putative permease [Kytococcus sedentarius DSM 20547]
 gi|256688637|gb|ACV06439.1| predicted permease [Kytococcus sedentarius DSM 20547]
          Length = 476

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 99/282 (35%), Gaps = 14/282 (4%)

Query: 50  SFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW 109
            F+ +        A+   +  + + +  L  +    + +  ++  + V   +    V  W
Sbjct: 94  RFLRRFMT-DGLAAMTTVIGALLVLLGVLTAIAPSLVDQSTQMADRAVTGIEE---VQTW 149

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
            S  P  +  S++        Q ++  S           I               ++++ 
Sbjct: 150 ASGPPLNIQDSQIDKAITQLTQRIQEASGD---------IAGGVFTGVSAVASAFVTVLM 200

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
            ++  FFF RDG      +  L       ++  +   + + +     G  II+  + +++
Sbjct: 201 TLVLTFFFVRDGEKFLPWISRLSGRTAAPHFLALGTRLWRTLGGYVRGQAIISAVDAVLI 260

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIE 288
           G A  L GVP   AL ++T +   +P    ++   +SI + L+      A  L       
Sbjct: 261 GIALVLLGVPMAGALIILTFLGGFVPIVGAVAVGILSILVALVSVGFTKALILLAVVLFV 320

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             +    L+P + G  +++        +  G    G+ G F+
Sbjct: 321 QNVEGNILQPIVQGKAMQMHEGLVLLSVTVGGSLFGIPGAFL 362


>gi|49185715|ref|YP_028967.1| hypothetical protein BAS2709 [Bacillus anthracis str. Sterne]
 gi|49477900|ref|YP_036984.1| permease [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|165869183|ref|ZP_02213843.1| putative membrane protein [Bacillus anthracis str. A0488]
 gi|167632559|ref|ZP_02390886.1| putative membrane protein [Bacillus anthracis str. A0442]
 gi|167637773|ref|ZP_02396052.1| putative membrane protein [Bacillus anthracis str. A0193]
 gi|170685430|ref|ZP_02876654.1| putative membrane protein [Bacillus anthracis str. A0465]
 gi|170704514|ref|ZP_02894980.1| putative membrane protein [Bacillus anthracis str. A0389]
 gi|177649451|ref|ZP_02932453.1| putative membrane protein [Bacillus anthracis str. A0174]
 gi|190565161|ref|ZP_03018081.1| putative membrane protein [Bacillus anthracis Tsiankovskii-I]
 gi|196032646|ref|ZP_03100060.1| putative membrane protein [Bacillus cereus W]
 gi|196043462|ref|ZP_03110700.1| putative membrane protein [Bacillus cereus 03BB108]
 gi|218904032|ref|YP_002451866.1| hypothetical protein BCAH820_2916 [Bacillus cereus AH820]
 gi|225864884|ref|YP_002750262.1| hypothetical protein BCA_2991 [Bacillus cereus 03BB102]
 gi|227814279|ref|YP_002814288.1| hypothetical protein BAMEG_1687 [Bacillus anthracis str. CDC 684]
 gi|229600254|ref|YP_002867167.1| hypothetical protein BAA_2971 [Bacillus anthracis str. A0248]
 gi|254685473|ref|ZP_05149333.1| permease [Bacillus anthracis str. CNEVA-9066]
 gi|254722880|ref|ZP_05184668.1| permease [Bacillus anthracis str. A1055]
 gi|254737930|ref|ZP_05195633.1| permease [Bacillus anthracis str. Western North America USA6153]
 gi|254742897|ref|ZP_05200582.1| permease [Bacillus anthracis str. Kruger B]
 gi|254752244|ref|ZP_05204281.1| permease [Bacillus anthracis str. Vollum]
 gi|254760761|ref|ZP_05212785.1| permease [Bacillus anthracis str. Australia 94]
 gi|270000556|ref|NP_845252.2| hypothetical protein BA_2916 [Bacillus anthracis str. Ames]
 gi|300117750|ref|ZP_07055521.1| permease [Bacillus cereus SJ1]
 gi|49179642|gb|AAT55018.1| membrane protein, putative [Bacillus anthracis str. Sterne]
 gi|49329456|gb|AAT60102.1| conserved hypothetical protein, possible permease [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|164715909|gb|EDR21426.1| putative membrane protein [Bacillus anthracis str. A0488]
 gi|167514322|gb|EDR89689.1| putative membrane protein [Bacillus anthracis str. A0193]
 gi|167532857|gb|EDR95493.1| putative membrane protein [Bacillus anthracis str. A0442]
 gi|170130315|gb|EDS99176.1| putative membrane protein [Bacillus anthracis str. A0389]
 gi|170670790|gb|EDT21529.1| putative membrane protein [Bacillus anthracis str. A0465]
 gi|172084525|gb|EDT69583.1| putative membrane protein [Bacillus anthracis str. A0174]
 gi|190563188|gb|EDV17153.1| putative membrane protein [Bacillus anthracis Tsiankovskii-I]
 gi|195995397|gb|EDX59351.1| putative membrane protein [Bacillus cereus W]
 gi|196025771|gb|EDX64440.1| putative membrane protein [Bacillus cereus 03BB108]
 gi|218536656|gb|ACK89054.1| putative membrane protein [Bacillus cereus AH820]
 gi|225787450|gb|ACO27667.1| putative membrane protein [Bacillus cereus 03BB102]
 gi|227006643|gb|ACP16386.1| putative membrane protein [Bacillus anthracis str. CDC 684]
 gi|229264662|gb|ACQ46299.1| putative membrane protein [Bacillus anthracis str. A0248]
 gi|269850242|gb|AAP26738.2| putative membrane protein [Bacillus anthracis str. Ames]
 gi|298724850|gb|EFI65521.1| permease [Bacillus cereus SJ1]
          Length = 361

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 53/330 (16%), Positives = 127/330 (38%), Gaps = 5/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P+L AL + F   P+      KK        ++  + ++ L  V +  +    
Sbjct: 35  FISTLFFPILIALFLYFIFNPVLVFLEDKKVPR-NLAILLLYLFIITLTAVGVGVVVPTI 93

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +LV  +    + G     ++ D+        L T++    ++++  +  +LK + 
Sbjct: 94  SQQLMDLVKNMPGYIKEG---KVYIQDLSHHRLFEWLSTQNYVSIETIEKNAIEYLK-DI 149

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + +   A+    I  +  L I  +   LF+ ++DG +   +  SL    +     +I +
Sbjct: 150 PNTLTSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPGKAVSLLPESYREEGLRIIK 209

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              + + +   G  ++ I  G      Y++  +P    LG+I A   +IP   P    A 
Sbjct: 210 ETNETLSAYIQGQALVCIFVGAFTFIGYFIIDLPYAFVLGIIAAFTNIIPNLGPFIGAAP 269

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A  + +   I        + P ++   + +  L     ++G     G+
Sbjct: 270 AVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIILILGVGNFAGI 329

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G+ +   + A+   +    +   K  +  
Sbjct: 330 IGMILAVPVYAVTKTVVSNLVRLFKTKRSN 359


>gi|325959136|ref|YP_004290602.1| hypothetical protein Metbo_1390 [Methanobacterium sp. AL-21]
 gi|325330568|gb|ADZ09630.1| protein of unknown function UPF0118 [Methanobacterium sp. AL-21]
          Length = 349

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 56/324 (17%), Positives = 126/324 (38%), Gaps = 10/324 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L    + +L   +I +    +                 +A    M +  VP++ + Y+ 
Sbjct: 26  ILFQILSLILFGAMIAYIVRHLAGKLHPFVRFE-----TLAIFLAMIILAVPIVLVAYFT 80

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  +   +  A          ++              +      L  ++   L    
Sbjct: 81  IHQLFLVAVDITGALPAPNTNTTMINQTMVSNDVQSAGPINGVAANLLDEIAN--LVAQS 138

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           + ++      F          +I ++ ++F+F ++G      ++ L        + +I  
Sbjct: 139 VVWLVGQIISFVASLPALFTDVIVLLFSVFYFAKEGDKFVGFIEDLLPKT--PTFSEIYS 196

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTA 264
            V  +++S  +   + A+  GL+    Y++ G P  + LG++TA    +P  G  I + A
Sbjct: 197 EVDAILKSIMITNILCAVILGLLSVVLYYILGYPYILLLGILTAFSEFVPVVGPWIVYGA 256

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           + +  ++ GN      + + G +   +VD  +RP L G    +  L    G + G  T+G
Sbjct: 257 LGVVDILTGNPVRGVIVIVVGWLIDTVVDMYIRPKLAGEFTNVHPLIFLVGFLFGALTLG 316

Query: 325 LLGLFIGPVLMALIAVIWKESIMA 348
           L GLFIGP+++ +  V++++    
Sbjct: 317 LPGLFIGPLIVGVTYVLFEKYREE 340


>gi|324326884|gb|ADY22144.1| hypothetical protein YBT020_14570 [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 361

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 54/330 (16%), Positives = 126/330 (38%), Gaps = 5/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P+L AL + F   P+      KK        ++  + ++ L  V +  +    
Sbjct: 35  FISTLFFPILIALFLYFIFNPVLVFLEEKKVPR-NLAILLLYLFIITLTAVGVGVVVPTI 93

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +LV  +    + G     ++ D+        L T++    ++++  +  +LK + 
Sbjct: 94  SQQLMDLVKNMPGYIKEG---KLYIQDLSHHRLFEWLSTQNYVSIETIEKNAIEYLK-DI 149

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + I   A+    I  +  L I  +   LF+ ++DG +   +  SL    +     +I +
Sbjct: 150 PNTITSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPGKAVSLLPESYREEGLRIIK 209

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              + + +   G  ++ I  G      Y +  +P    LG+I A   +IP   P    A 
Sbjct: 210 ETNETLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIPNLGPFIGAAP 269

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A  + +   I        + P ++   + +  L     ++G     G+
Sbjct: 270 AVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIILILGVGNFAGI 329

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G+ +   + A+   +    +   K  +  
Sbjct: 330 IGMILAVPVYAVTKTVVSNLVRLFKTKRSN 359


>gi|295697169|ref|YP_003590407.1| sporulation integral membrane protein YtvI [Bacillus tusciae DSM
           2912]
 gi|295412771|gb|ADG07263.1| sporulation integral membrane protein YtvI [Bacillus tusciae DSM
           2912]
          Length = 418

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 58/328 (17%), Positives = 125/328 (38%), Gaps = 15/328 (4%)

Query: 14  WMIMFIILVSLYFLK--GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
            +++F+I+VS  FL+   +  P +  L+      PI S     +   +   A++  + V+
Sbjct: 26  LLVLFMIVVSWAFLRTLPYTMPFVIGLVTAVLLQPIVSLLERWRVPRT--AAILTAMVVI 83

Query: 72  CLFI-VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
              I + L+++      E+  L  ++    Q    V  W+S      +  E+    +S  
Sbjct: 84  LGVISLGLVYVVVQIAQEVAVLSGQLP---QIYASVRDWISY--QFQYGREIVPPSMSAE 138

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDY---CLSIIFMIIALFFFYRDGFSISQQ 187
               +   T L +  +  +  +   +             ++  II+ +FF RD   I++ 
Sbjct: 139 MEAMLQHFTQLGSTEVSRLLDYVLSWLHGLTGLPEWITVLVLAIISTYFFLRDRERIARG 198

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L S+    +      + R V   +        I+ +    +      +  V   + +G +
Sbjct: 199 LVSVLPPSWDLKLTAVFRDVAHAMTGMVRAQLILTLITMAMSIIGLLVFRVEYAITIGTL 258

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             +  ++P  G+ I     + + LI G       +       + +V   + P ++   + 
Sbjct: 259 IGLTGLVPIVGSLIVTIPWAGWCLITGQYTLGLEILALQG-VISLVRHIIEPKILADNMG 317

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
           L        +  G + +G+LGLF+GPVL
Sbjct: 318 LDTFSALIAVYVGWKILGVLGLFVGPVL 345


>gi|289705950|ref|ZP_06502324.1| aldose 1-epimerase [Micrococcus luteus SK58]
 gi|289557287|gb|EFD50604.1| aldose 1-epimerase [Micrococcus luteus SK58]
          Length = 728

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 76/205 (37%), Gaps = 1/205 (0%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +   A  FG   ++    +   + +L FF  DG  I + L         A   +  R   
Sbjct: 476 LMNSAVSFGSTAVNIGAGLFIALFSLIFFLYDGDRIWRFLLIFVPKAHRATVGRAGRSGW 535

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           + + S       +A  + + +G    + GVP  + L V+  + + IP        A+++ 
Sbjct: 536 QSLGSYVRVQIFVAFIDAVGIGIGALILGVPLAIPLAVLVFLASFIPMIGATLTGAMAVL 595

Query: 269 L-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           L L+   + NA  +     +   I    L+P ++G  + L  L  F  +  G   +GL G
Sbjct: 596 LALMSNGLVNALLMLGVVLLVQQIESNVLQPLVMGKAVALHPLAVFLAVAAGSTVLGLAG 655

Query: 328 LFIGPVLMALIAVIWKESIMAIKEN 352
                 ++A +    +       E 
Sbjct: 656 AVFAVPVLAFVNSFVRALTADTPEE 680


>gi|229097430|ref|ZP_04228392.1| hypothetical protein bcere0020_26730 [Bacillus cereus Rock3-29]
 gi|228686241|gb|EEL40157.1| hypothetical protein bcere0020_26730 [Bacillus cereus Rock3-29]
          Length = 348

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 54/330 (16%), Positives = 127/330 (38%), Gaps = 5/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P+L AL + F   P+     +KK        ++  + ++ L  V +  +    
Sbjct: 22  FISTLFFPILIALFLYFIFNPVLVFLENKKVPR-NLAILLLYLFIITLTAVGVGVVVPTI 80

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +LV  +    + G     ++ D+        L T++    ++++  +  +LK + 
Sbjct: 81  SQQLMDLVKNMPGYIKEG---KVYIQDLSHHRLFEWLSTQNYVSIETIEKNAIEYLK-DI 136

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + I   A+    I  +  L I  +   LF+ ++DG +   +  SL    +     +I +
Sbjct: 137 PNTITSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPGKAVSLLPESYREEGLRIIK 196

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              + + +   G  ++ I  G      Y +  +P    LG+I A   +IP   P    A 
Sbjct: 197 ETNETLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIPNLGPFIGAAP 256

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A  + +   I        + P ++   + +  L     ++G     G+
Sbjct: 257 AVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIILILGVGNFAGI 316

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G+ +   + A+   +    +   K  +  
Sbjct: 317 IGMILAVPVYAVTKTVVSNLVRLFKTKRNN 346


>gi|228940031|ref|ZP_04102605.1| hypothetical protein bthur0008_26820 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228972926|ref|ZP_04133521.1| hypothetical protein bthur0003_26900 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228979509|ref|ZP_04139839.1| hypothetical protein bthur0002_26870 [Bacillus thuringiensis Bt407]
 gi|228780206|gb|EEM28443.1| hypothetical protein bthur0002_26870 [Bacillus thuringiensis Bt407]
 gi|228786799|gb|EEM34783.1| hypothetical protein bthur0003_26900 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228819643|gb|EEM65694.1| hypothetical protein bthur0008_26820 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 348

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 52/330 (15%), Positives = 127/330 (38%), Gaps = 5/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P+L AL + F   P+     +KK        ++  + ++ L  V +  +    
Sbjct: 22  FISTLFFPILIALFLYFIFNPVLIFLENKKVPR-NLAILLLYLFIITLTAVGVGVVVPTI 80

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +LV  +    + G     ++ ++        L T++    ++++  +  +LK + 
Sbjct: 81  SQQLMDLVKNMPSYIKEG---KVYIQELSHHRLFEWLSTQNYVSIETIEKNAIEYLK-DI 136

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + I   A+    I  +  L +  +   LF+ ++DG +   +  SL    +     +I +
Sbjct: 137 PNTITSSATALFGIITNVALVVFTVPFILFYMFKDGHAFPGKAVSLLPESYREEGLRIIK 196

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              + + +   G  ++ I  G      Y +  +P    LG+I A   +IP   P    A 
Sbjct: 197 ETNETLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIPNLGPFIGAAP 256

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A  + +   I        + P ++   + +  L     ++G     G+
Sbjct: 257 AVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIILILGVGNFAGI 316

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G+ +   + A+   +    +   K  +  
Sbjct: 317 IGMILAVPVYAVTKTVVSNLVRLFKTKRSN 346


>gi|30021024|ref|NP_832655.1| hypothetical protein BC2907 [Bacillus cereus ATCC 14579]
 gi|206971945|ref|ZP_03232894.1| putative membrane protein [Bacillus cereus AH1134]
 gi|218234607|ref|YP_002367635.1| hypothetical protein BCB4264_A2927 [Bacillus cereus B4264]
 gi|218897990|ref|YP_002446401.1| hypothetical protein BCG9842_B2316 [Bacillus cereus G9842]
 gi|296503446|ref|YP_003665146.1| hypothetical protein BMB171_C2614 [Bacillus thuringiensis BMB171]
 gi|29896577|gb|AAP09856.1| hypothetical Membrane Spanning Protein [Bacillus cereus ATCC 14579]
 gi|206733330|gb|EDZ50503.1| putative membrane protein [Bacillus cereus AH1134]
 gi|218162564|gb|ACK62556.1| putative membrane protein [Bacillus cereus B4264]
 gi|218540616|gb|ACK93010.1| putative membrane protein [Bacillus cereus G9842]
 gi|296324498|gb|ADH07426.1| hypothetical protein BMB171_C2614 [Bacillus thuringiensis BMB171]
          Length = 361

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 52/330 (15%), Positives = 127/330 (38%), Gaps = 5/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P+L AL + F   P+     +KK        ++  + ++ L  V +  +    
Sbjct: 35  FISTLFFPILIALFLYFIFNPVLIFLENKKVPR-NLAILLLYLFIITLTAVGVGVVVPTI 93

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +LV  +    + G     ++ ++        L T++    ++++  +  +LK + 
Sbjct: 94  SQQLMDLVKNMPGYIKEG---KVYIQELSHHRLFEWLSTQNYVSIETIEKNAIEYLK-DI 149

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + I   A+    I  +  L +  +   LF+ ++DG +   +  SL    +     +I +
Sbjct: 150 PNTITSSATALFGIITNVALVVFTVPFILFYMFKDGHAFPGKAVSLLPESYREEGLRIIK 209

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              + + +   G  ++ I  G      Y +  +P    LG+I A   +IP   P    A 
Sbjct: 210 ETNETLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIPNLGPFIGAAP 269

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A  + +   I        + P ++   + +  L     ++G     G+
Sbjct: 270 AVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIILILGVGNFAGI 329

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G+ +   + A+   +    +   K  +  
Sbjct: 330 IGMILAVPVYAVTKTVVSNLVRLFKTKRSN 359


>gi|116334063|ref|YP_795590.1| permease [Lactobacillus brevis ATCC 367]
 gi|116099410|gb|ABJ64559.1| Predicted permease [Lactobacillus brevis ATCC 367]
          Length = 395

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 112/320 (35%), Gaps = 7/320 (2%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P++ A +  +   PI     +K  + +  ++ +  +    L    +  +          +
Sbjct: 58  PIVLAGVGYYLLNPIVDWLETKHVKRTWSISGLFVIVAGLLAWGIISLIPMIQQQVTGLI 117

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
                   +       WL D        +L   +     S      +  K          
Sbjct: 118 TEWPHYWREITNTTMHWLKDDRLDGIRKQLEQFNQQLSDSSSSAISSLAKNT-----VSS 172

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
                   +   ++++     LF+  RDG  + + L  L           + R +   + 
Sbjct: 173 VGGIVSRVVSIAVAVVTAPFILFYLLRDGHRLPEYLARLFPIKRREDVVHLLREMNLQVS 232

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLI 271
           +   G  I+A    ++    + + G+P  + LG+   I+ ++P  G+ ++   V I    
Sbjct: 233 NYVRGQLIVAFIVAIMFYIGFLIIGLPFALLLGISAGILNLVPYLGSFLAMVPVVIVAAF 292

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
             + +    + +   IE  +  + + P ++G  +K+  L   F L+   +  G++G+ +G
Sbjct: 293 I-SPWMLIKVLIVFVIEQTLEGRAISPLVLGSSLKIHPLTIIFILLVAGKAFGVVGVVLG 351

Query: 332 PVLMALIAVIWKESIMAIKE 351
               A+I VI  E     ++
Sbjct: 352 IPGYAVIKVIATEFFQWYQK 371


>gi|152975747|ref|YP_001375264.1| hypothetical protein Bcer98_1995 [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152024499|gb|ABS22269.1| protein of unknown function UPF0118 [Bacillus cytotoxicus NVH
           391-98]
          Length = 361

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 54/328 (16%), Positives = 127/328 (38%), Gaps = 5/328 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P+L AL + F   P+     ++K        ++  V ++ L  V +  +    
Sbjct: 35  FISTLFFPILIALFLYFIFNPVLVFLENQKVPR-NLAVLLLYVFIITLTAVAIGVVVPTV 93

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ ELV  +    + G     ++ ++        L T+     ++++  +  +LK + 
Sbjct: 94  SQQLMELVKNLPNYIKEG---KIYIQELSHHRLFEWLTTQDYISIETIEKNAVEYLK-DI 149

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + I   A+    I  +  L I  +   LF+ ++DG +  ++  S     +     +I +
Sbjct: 150 PNTITSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPRKAVSFLPESYREEGLRIIK 209

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              + + +   G  ++ +  G      Y++ G+P    LG+I A   +IP   P    A 
Sbjct: 210 ETNETLSAYIQGQALVCLFVGAFTFIGYFIIGLPYAFILGIIAAFTNIIPNLGPFIGAAP 269

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A  + L   I        + P ++   + +  L     ++G     G+
Sbjct: 270 AVIVGLFVSPMQAVWVILVVTIVQQFESNIISPRIMSSKLNIHPLTVIVLILGVGNFAGI 329

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENK 353
           +G+ +     A+   +    +   K  +
Sbjct: 330 IGMILAVPAYAVTKTVVSNLVRLFKTKR 357


>gi|206973928|ref|ZP_03234846.1| putative membrane protein [Bacillus cereus H3081.97]
 gi|217960351|ref|YP_002338911.1| hypothetical protein BCAH187_A2961 [Bacillus cereus AH187]
 gi|206748084|gb|EDZ59473.1| putative membrane protein [Bacillus cereus H3081.97]
 gi|217064849|gb|ACJ79099.1| putative membrane protein [Bacillus cereus AH187]
          Length = 361

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 54/330 (16%), Positives = 126/330 (38%), Gaps = 5/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P+L AL + F   P+      KK        ++  + ++ L  V +  +    
Sbjct: 35  FISTLFFPILIALFLYFIFNPVLVFLEDKKVPR-NLAILLLYLFIITLTAVGVGVVVPTI 93

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +LV  +    + G     ++ D+        L T++    ++++  +  +LK + 
Sbjct: 94  SQQLMDLVKNMPGYIKEG---KLYIQDLSHHRLFEWLSTQNYVSIETIEKNAIEYLK-DI 149

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + I   A+    I  +  L I  +   LF+ ++DG +   +  SL    +     +I +
Sbjct: 150 PNTITSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPGKAVSLLPESYREEGLRIIK 209

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              + + +   G  ++ I  G      Y +  +P    LG+I A   +IP   P    A 
Sbjct: 210 ETNETLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIPNLGPFIGAAP 269

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A  + +   I        + P ++   + +  L     ++G     G+
Sbjct: 270 AVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIILILGVGNFAGI 329

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G+ +   + A+   +    +   K  +  
Sbjct: 330 IGMILAVPVYAVTKTVVSNLVRLFKTKRSN 359


>gi|307721655|ref|YP_003892795.1| hypothetical protein Saut_1739 [Sulfurimonas autotrophica DSM
           16294]
 gi|306979748|gb|ADN09783.1| protein of unknown function UPF0118 [Sulfurimonas autotrophica DSM
           16294]
          Length = 349

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 64/354 (18%), Positives = 138/354 (38%), Gaps = 29/354 (8%)

Query: 13  RWMIMFIILVSLYFLK----GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           ++ I  +   SLY++      F   +  A ++  ++  I + F      S    A ++++
Sbjct: 4   QYFIAILFATSLYWMYLLYEPFLMVMTIAALLAISTASINNYFEQLF-SSRFVAAFLSSL 62

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  LF  PL +      +++  L  +        + +   +++ P  +   + +     
Sbjct: 63  LLAILFFAPLGYFLATLTIKLNHL--EPNSLKNIELYINGLITNPPEFLLFLKPYLVDSL 120

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               +  L+   L           A++ G     +  +   +I+  FF   +G +I + L
Sbjct: 121 KGIDINSLTANALH---------VAAKVGTFSAGFVKNAFLVIVFYFFAMYNGSTIVEFL 171

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             + +         ++R +  V+   F  +   A+ EG + G A    G  + +  G++ 
Sbjct: 172 KRVVQMSVEDST-LLARELSAVMSVVFYSIIATAMLEGALFGIAVSFMGY-NGLLFGIMY 229

Query: 249 AIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVG---- 302
              +++P  G  + +    IY L  G+  NA  + L+  I + ++ D  ++P ++     
Sbjct: 230 GFASLLPVVGGILMWLPFMIYELSAGHNANAVFIALYSIIVISVIADTFIKPLIIKEINK 289

Query: 303 -----GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
                   KL  L  FF ++ G+ T G  G+ +GP + A    I K      KE
Sbjct: 290 RLLKESDAKLNELVIFFSIIAGLATFGFWGMILGPAITAFFLAILKLFEARTKE 343


>gi|69245324|ref|ZP_00603368.1| Protein of unknown function UPF0118 [Enterococcus faecium DO]
 gi|257880028|ref|ZP_05659681.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257882264|ref|ZP_05661917.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257885461|ref|ZP_05665114.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257891119|ref|ZP_05670772.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257893933|ref|ZP_05673586.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|258614642|ref|ZP_05712412.1| hypothetical protein EfaeD_02925 [Enterococcus faecium DO]
 gi|260560358|ref|ZP_05832534.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|261208296|ref|ZP_05922969.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289565616|ref|ZP_06446062.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|293553298|ref|ZP_06673934.1| transport protein [Enterococcus faecium E1039]
 gi|293563029|ref|ZP_06677495.1| transport protein [Enterococcus faecium E1162]
 gi|293567678|ref|ZP_06679021.1| transport protein [Enterococcus faecium E1071]
 gi|294614303|ref|ZP_06694221.1| transport protein [Enterococcus faecium E1636]
 gi|294619152|ref|ZP_06698640.1| transport protein [Enterococcus faecium E1679]
 gi|294623073|ref|ZP_06701959.1| transport protein [Enterococcus faecium U0317]
 gi|314938320|ref|ZP_07845612.1| putative sporulation integral membrane protein YtvI [Enterococcus
           faecium TX0133a04]
 gi|314941803|ref|ZP_07848679.1| putative sporulation integral membrane protein YtvI [Enterococcus
           faecium TX0133C]
 gi|314948645|ref|ZP_07852019.1| putative sporulation integral membrane protein YtvI [Enterococcus
           faecium TX0082]
 gi|314952572|ref|ZP_07855568.1| putative sporulation integral membrane protein YtvI [Enterococcus
           faecium TX0133A]
 gi|314992262|ref|ZP_07857698.1| putative sporulation integral membrane protein YtvI [Enterococcus
           faecium TX0133B]
 gi|314997473|ref|ZP_07862420.1| putative sporulation integral membrane protein YtvI [Enterococcus
           faecium TX0133a01]
 gi|68195854|gb|EAN10289.1| Protein of unknown function UPF0118 [Enterococcus faecium DO]
 gi|257814256|gb|EEV43014.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257817922|gb|EEV45250.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257821317|gb|EEV48447.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257827479|gb|EEV54105.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257830312|gb|EEV56919.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|260073703|gb|EEW62029.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|260077553|gb|EEW65271.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289162584|gb|EFD10438.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|291589613|gb|EFF21418.1| transport protein [Enterococcus faecium E1071]
 gi|291592857|gb|EFF24448.1| transport protein [Enterococcus faecium E1636]
 gi|291594577|gb|EFF25966.1| transport protein [Enterococcus faecium E1679]
 gi|291597442|gb|EFF28607.1| transport protein [Enterococcus faecium U0317]
 gi|291602522|gb|EFF32738.1| transport protein [Enterococcus faecium E1039]
 gi|291604943|gb|EFF34411.1| transport protein [Enterococcus faecium E1162]
 gi|313588482|gb|EFR67327.1| putative sporulation integral membrane protein YtvI [Enterococcus
           faecium TX0133a01]
 gi|313593167|gb|EFR72012.1| putative sporulation integral membrane protein YtvI [Enterococcus
           faecium TX0133B]
 gi|313595341|gb|EFR74186.1| putative sporulation integral membrane protein YtvI [Enterococcus
           faecium TX0133A]
 gi|313599419|gb|EFR78262.1| putative sporulation integral membrane protein YtvI [Enterococcus
           faecium TX0133C]
 gi|313642318|gb|EFS06898.1| putative sporulation integral membrane protein YtvI [Enterococcus
           faecium TX0133a04]
 gi|313644898|gb|EFS09478.1| putative sporulation integral membrane protein YtvI [Enterococcus
           faecium TX0082]
          Length = 388

 Score =  102 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 113/317 (35%), Gaps = 5/317 (1%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P++ A I+ +   P+   F  +K       ++I    ++   I     +    + E  + 
Sbjct: 60  PIILAGILYYLMNPVVDYFEKRKVPR--LYSIIGLFVLVVALIAWGSVVIIPKIQE--QT 115

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
           VS +    Q+   +   L++I      ++   +  +        +   ++      +   
Sbjct: 116 VSFISNFPQYVDTIDNKLTEILRDPLFNQFREQLETAGDKFMNSAGDMIQDISKSTVQSL 175

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
            S  G +     ++++ M   LF+  +DG  ++                 +   +   + 
Sbjct: 176 GSFVGAVAT-ILVALLTMPFILFYLLKDGKQLAPYFVKFLPTRMQKPTLNVLSEMNSQVS 234

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
           S   G   +A    ++    + + G+   V LG+I   + +IP          +I+L I 
Sbjct: 235 SYIRGQLTVAFAVAIMFMIGFAVIGLEYAVTLGIIAGFLNLIPYLGSFLAMIPAIFLAIV 294

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
              F    + +  A+E  I  + + P ++G  + +  +     L+   +  G++G+ +G 
Sbjct: 295 AGPFMIIKVLIVFAVEQTIEGRLISPLVLGNQLAIHPVTILLVLLTSGKLFGIIGVILGI 354

Query: 333 VLMALIAVIWKESIMAI 349
            + A   V+        
Sbjct: 355 PVYAAAKVVITHVFEWY 371


>gi|196042276|ref|ZP_03109555.1| putative membrane protein [Bacillus cereus NVH0597-99]
 gi|196026895|gb|EDX65523.1| putative membrane protein [Bacillus cereus NVH0597-99]
          Length = 361

 Score =  102 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 53/330 (16%), Positives = 126/330 (38%), Gaps = 5/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P+L AL + F   P+      KK        ++  + ++ L  V +  +    
Sbjct: 35  FISTLFFPILIALFLYFIFNPVLVFLEDKKVPR-NLAILLLYLFIITLTAVGVGVVVPTI 93

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +LV  +    + G     ++ D+        L T++    ++++  +  +LK + 
Sbjct: 94  SQQLMDLVKNMPGYIKEG---KVYIQDLSHHRLFEWLSTQNYVSIETIEKNAIEYLK-DI 149

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + +   A+    I  +  L I  +   LF+ ++DG +   +  SL    +     +I +
Sbjct: 150 PNTLTSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPGKAVSLLPESYREEGLRIIK 209

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              + + +   G  ++ I  G      Y +  +P    LG+I A   +IP   P    A 
Sbjct: 210 ETNETLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIPNLGPFIGAAP 269

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A  + +   I        + P ++   + +  L     ++G     G+
Sbjct: 270 AVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIILILGVGNFAGI 329

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G+ +   + A+   +    +   K  +  
Sbjct: 330 IGMILAVPVYAVTKTVVSNLVRLFKTKRSN 359


>gi|229018227|ref|ZP_04175099.1| hypothetical protein bcere0030_27580 [Bacillus cereus AH1273]
 gi|229024411|ref|ZP_04180862.1| hypothetical protein bcere0029_27280 [Bacillus cereus AH1272]
 gi|228736872|gb|EEL87416.1| hypothetical protein bcere0029_27280 [Bacillus cereus AH1272]
 gi|228742995|gb|EEL93123.1| hypothetical protein bcere0030_27580 [Bacillus cereus AH1273]
          Length = 373

 Score =  102 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 53/330 (16%), Positives = 129/330 (39%), Gaps = 5/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P+L AL + F   P+     +KK        ++  + ++ L  V +  +    
Sbjct: 47  FISTLFFPILIALFLYFIFNPLLVFLENKKVPR-GLAILLLYLFIITLTGVAIGVVVPTI 105

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +LV  +    + G     ++ D+        L T++    ++++  +  +LK   
Sbjct: 106 SQQLMDLVKNMPTYIKEG---KVYIQDLSHHRLFEWLSTQNYVSIETIEKNAIEYLKEIP 162

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
                   + FG+I  +  L I  +   LF+ ++DG +   +  S+    +     +I +
Sbjct: 163 NTLTSSATALFGIIT-NVALVIFTVPFILFYMFKDGHAFPGKAVSVLPESYREEGLRIIK 221

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              + + +   G  ++ +  G    + Y + G+P    LG+I A+  +IP   P    A 
Sbjct: 222 ETNETLSAYIQGQALVCMFIGAFTFTGYLIIGLPYAFVLGIIAALTNIIPNLGPFIGAAP 281

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A  + +   I        + P ++   + +  L     ++G     G+
Sbjct: 282 AVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIILILGVGNFAGI 341

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G+ +   + A+   +    +   K  +  
Sbjct: 342 IGMILAVPVYAVTKTVVSNLVRLFKTKRSN 371


>gi|315639996|ref|ZP_07895123.1| membrane protein [Enterococcus italicus DSM 15952]
 gi|315484258|gb|EFU74727.1| membrane protein [Enterococcus italicus DSM 15952]
          Length = 395

 Score =  102 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 46/319 (14%), Positives = 114/319 (35%), Gaps = 5/319 (1%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           PV+ A I+ +   P       +  +      + + + +  L I  +++     + E+++ 
Sbjct: 67  PVVLAGILYYLMNPTVDFLEKRGVKR-----IYSIIGLFLLVIGLIVWGVVVIIPEIRDQ 121

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
               V      +     + +          +   ++      + S T +  N      + 
Sbjct: 122 TISFVNQFPSYVDTAEKVMNDLFSDPVFHQFQAQVASSSEKLMNSLTDIIKNVSKSTFQN 181

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
              F        +++I M   LF+  +DG  ++  L             ++   + + + 
Sbjct: 182 IGNFFGAVATIFVAVITMPFILFYLLKDGKKLAPYLVDFLPTKMRKSTLRVLTEMNQQVS 241

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
           S   G   +A    ++    + + G+   + LG++  ++ +IP          +I+L I 
Sbjct: 242 SYIRGQLTVAFAVAVMFMIGFSIIGLEYSITLGIVAGVLNLIPYLGSFLAMIPAIFLGIV 301

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
           G       + +   IE  +  + + P ++G  + +  +   F L+   +  GL+G+ +G 
Sbjct: 302 GGPVLLLKVIIVFVIEQTLEGRFVSPLVLGSQLSIHPITILFVLLTSGKLFGLVGVILGI 361

Query: 333 VLMALIAVIWKESIMAIKE 351
            + A   VI        K+
Sbjct: 362 PVYAAAKVIITNVFQWYKQ 380


>gi|149179846|ref|ZP_01858351.1| hypothetical protein BSG1_02485 [Bacillus sp. SG-1]
 gi|148852038|gb|EDL66183.1| hypothetical protein BSG1_02485 [Bacillus sp. SG-1]
          Length = 359

 Score =  102 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 112/312 (35%), Gaps = 6/312 (1%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P++   I+ +   P+ +    K         ++  ++V+ L    + +       ++ 
Sbjct: 41  FGPIVLGGILYYLFRPLVNLLAKKMP--RAVAILLLYLAVIGLITGVVFYAGPILQRQIS 98

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L+       +      + L ++    W S          + +      +L       + 
Sbjct: 99  SLIENTPQLIEK---FRQTLLNLQQSEWVSRFQNGDRFSLEDITNRLTDYLNEAAST-LG 154

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                      +  + II +   L++  +DG  +S ++  L         KK+   +   
Sbjct: 155 SNLMNILSTITNIIVLIILIPFVLYYMLKDGNKLSGKILKLVPKKHEEEGKKVLSDMDDA 214

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G  I++   G+++   Y + G+   + + ++T +  +IP   P+  +  +I + 
Sbjct: 215 LSSYIQGQVIVSFCVGVLVYIGYLIIGLDYSLVISILTMLTNVIPFIGPLISSIPAIIVA 274

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
                  A  + +   I   I    + P ++G  + +  L     LV   +  G LGL +
Sbjct: 275 FLQEPIMALWVIVVILIVQQIEGNLISPQVMGRKLDIHPLTIILLLVAAGKFAGFLGLLL 334

Query: 331 GPVLMALIAVIW 342
                A++ VI+
Sbjct: 335 AVPAYAVLKVIF 346


>gi|229173568|ref|ZP_04301111.1| hypothetical protein bcere0006_26680 [Bacillus cereus MM3]
 gi|228609950|gb|EEK67229.1| hypothetical protein bcere0006_26680 [Bacillus cereus MM3]
          Length = 348

 Score =  102 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 54/330 (16%), Positives = 127/330 (38%), Gaps = 5/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P+L AL + F   P+     +KK        ++  + ++ L  V +  +    
Sbjct: 22  FISTLFFPILIALFLYFIFNPLLVFLENKKVPR-NLAILLLYLFIITLTAVGVGVVVPTI 80

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +LV  +    + G     ++ D+        L T++    ++++  +  +LK + 
Sbjct: 81  SQQLMDLVKNMPGYIKEG---KLYIQDLSHHRLFEWLSTQNYVSIETIEKNAIEYLK-DI 136

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + I   A+    I  +  L I  +   LF+ ++DG +   +  SL    +     +I +
Sbjct: 137 PNTITSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPGKAVSLLPESYREEGLRIIK 196

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              + + +   G  ++ I  G      Y +  +P    LG+I A   +IP   P    A 
Sbjct: 197 ETNETLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIPNLGPFIGAAP 256

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A  + +   I        + P ++   + +  L     ++G     G+
Sbjct: 257 AVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIILILGVGNFAGI 316

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G+ +   + A+   +    +   K  +  
Sbjct: 317 IGMILAVPVYAVTKTVVSNLVRLFKTKRSN 346


>gi|227889594|ref|ZP_04007399.1| permease [Lactobacillus johnsonii ATCC 33200]
 gi|227849842|gb|EEJ59928.1| permease [Lactobacillus johnsonii ATCC 33200]
          Length = 393

 Score =  102 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 113/328 (34%), Gaps = 19/328 (5%)

Query: 25  YFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           + L  F       F P+L A I  +   P+      K +       +I  + +  + +  
Sbjct: 44  FVLNPFWTFFNAIFPPILVASIQYYLMDPVVDWMEKKLKVPR----IITIILLFVIVVGG 99

Query: 78  LLFLFYYGM----LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           L+++    +     +   LV       +        +   P          + LS  Q+ 
Sbjct: 100 LIWIINTLIPIIQHQTDSLVKNWPTYWKDAQKGFEKMIRDPRLNGVRGGINQALSDAQTK 159

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
              +      +  +      S    +     ++++     LFF  +DG  ++  +  +  
Sbjct: 160 MFKT----GQDSFNLALSNLSSAVNVITMIFMTLLTAPFVLFFMLKDGHRLNPYVTKIAP 215

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                 +  +   +   + S   G   +A   G++    Y + G+   + L V+  I+ M
Sbjct: 216 KKLQPSFSSLLSDINGAVASYIRGQITVAFWVGVIFAIGYSVIGLNYGITLAVLAGILNM 275

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP          +I L +  +      + +  AIE  +  + + P ++G  + +  + T 
Sbjct: 276 IPYFGTFIAFIPAIILGLISSPMMLIKVLIVFAIEQTLEGRVISPLVMGNKMNMNPVTTI 335

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             L+G     GL G+     + A+I +I
Sbjct: 336 LLLIGASAVAGLWGVIFAIPVYAVIKII 363


>gi|57866873|ref|YP_188508.1| hypothetical protein SERP0929 [Staphylococcus epidermidis RP62A]
 gi|242242638|ref|ZP_04797083.1| permease [Staphylococcus epidermidis W23144]
 gi|293366676|ref|ZP_06613352.1| conserved hypothetical protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|57637531|gb|AAW54319.1| conserved hypothetical protein [Staphylococcus epidermidis RP62A]
 gi|242233774|gb|EES36086.1| permease [Staphylococcus epidermidis W23144]
 gi|291318977|gb|EFE59347.1| conserved hypothetical protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|319401353|gb|EFV89564.1| conserved hypothetical protein [Staphylococcus epidermidis FRI909]
 gi|329725108|gb|EGG61602.1| putative membrane protein [Staphylococcus epidermidis VCU144]
 gi|329736684|gb|EGG72950.1| putative membrane protein [Staphylococcus epidermidis VCU045]
          Length = 405

 Score =  102 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 54/359 (15%), Positives = 132/359 (36%), Gaps = 18/359 (5%)

Query: 11  IMRWMIMFIILVSLYFLKGFF-------APVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           ++  +++FI     Y  + F        AP++ +L++ +   PI +     +        
Sbjct: 39  VLLGIVIFIFDKISYVFQPFIIVFNTIAAPIIVSLVLFYLFNPIVNMMERYRIPR----- 93

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
               + +  +++  +  +     L +  + S++    ++       ++     +  + + 
Sbjct: 94  ---LLGITIIYVAIVGIITLIVNLLIPIIGSQIESFIKNTPNYLHKITRSLDKLNNNTIL 150

Query: 124 TKHLSHPQSLKILSETFLKTNGIDF---IPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           + ++         ++  + +   D+        + F     +  + I      LFF  +D
Sbjct: 151 SGYMGQVNEWLESAQKKIPSMVSDYSDGFGSKLATFAEAVANIGIVIGTTPFVLFFMLKD 210

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G         +    F   +  +   +   + S   G  I++   GL+L   Y + G+  
Sbjct: 211 GHKFKDYTTKIMPPKFRKDFHDLLEKMSVQVGSYIQGQIIVSFCIGLLLFIGYSIIGLKY 270

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + L  I A+ +++P   P    + +I + I  +      L +   +  F     + P +
Sbjct: 271 ALVLASIAAVTSVVPYLGPTIAISPAIVIAIITSPLMLLKLAVVWTLVQFFEGHFISPNV 330

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +G  +K+  L   F L+     MG++G+ IG  L A++ V+     M  K    +   N
Sbjct: 331 MGKTLKIHPLTIIFILLCAGNLMGIVGVIIGIPLYAVLKVLVSHIFMLFKRRYNRYYGN 389


>gi|119715222|ref|YP_922187.1| hypothetical protein Noca_0978 [Nocardioides sp. JS614]
 gi|119535883|gb|ABL80500.1| protein of unknown function UPF0118 [Nocardioides sp. JS614]
          Length = 452

 Score =  102 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 57/320 (17%), Positives = 111/320 (34%), Gaps = 17/320 (5%)

Query: 13  RWMIMFIILVSLYFLKGFFA----PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           R++++      L +L  FFA    P++ AL+I     P+      +        A++  +
Sbjct: 91  RFLVIAAAAYVLLWLVAFFAVVTIPLIVALLIAALVVPVVDGL-HRVGLPRGLAALLVVL 149

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           + +   +  L F         ++L  +          +  WL D P             S
Sbjct: 150 AGIAFVVALLTFAGQQVATGAQDLADQSAKGLGE---IKDWLRDGP--------LHASDS 198

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                   ++  L+  G        +  G         +  ++ + +FF  DG  I   +
Sbjct: 199 QINDYIQRAQDGLENTGKGIDLGSVTEVGTAVGHIFAGLFIVLFSTYFFLADGERIWAWM 258

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L       +     R+    +        I+A  + L +     + G+P  +ALGV+ 
Sbjct: 259 VRLAPRAARQHVDSSGRVAWISLTQFVRATVIVAAVDALGIMVVAGILGLPFVLALGVLV 318

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A +P  GA ++ T   +  L+      A  +     +   +    L+PFL+G  + L
Sbjct: 319 FLGAFVPMVGATVAGTVAVLVALVDQGPITALFMLGGVILVQQLEGHVLQPFLMGRWVSL 378

Query: 308 PFLPTFFGLVGGVRTMGLLG 327
             L     +  GV   G+ G
Sbjct: 379 HPLGVIVAIGCGVLVAGIAG 398


>gi|78777874|ref|YP_394189.1| hypothetical protein Suden_1677 [Sulfurimonas denitrificans DSM
           1251]
 gi|78498414|gb|ABB44954.1| Protein of unknown function UPF0118 [Sulfurimonas denitrificans DSM
           1251]
          Length = 330

 Score =  102 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 61/335 (18%), Positives = 135/335 (40%), Gaps = 25/335 (7%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
             F   ++ A ++  ++  I++ F    + S    A+ +++ +  LF VPL +      +
Sbjct: 6   APFLLGMIIAALLAISTSNIHNFFEKILK-SKFLAALSSSILLAVLFFVPLGYFLVTLSI 64

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           ++  +  +V       I +  +L + P  +   + +         ++   E     +   
Sbjct: 65  KLNSVDPEV--FKNIEITIRDFLVNPPEYLLFLKPY---------MQTTIEDISINSIAS 113

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
           +I  F    G +   Y  +   +I+  FF    G  I   L  + + +       +++ +
Sbjct: 114 YIFSFTGDIGSLSAGYLKNSFLVIVFYFFAQYSGGFIIDLLKRVVQ-MSADEATLLAKEL 172

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVS 266
             V+   F  + + A+ +G++ G A    G  + +  G++    ++IP  G  + +   +
Sbjct: 173 SSVMSVVFYSIIVNAMLQGILFGLAISYMGY-NGLLFGIMYGFASLIPVVGGVLMWLPFT 231

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGG---------PIKLPFLPTFFGL 316
           +Y    G+  NA  + L+  + + IV D  ++P ++             K+  L  FF +
Sbjct: 232 LYEFSMGDSSNAIFIALYTVVVISIVADTFIKPLIIKELNLRLLKEDDAKMNELIIFFAI 291

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           + G+ T G  G+ +GP + A    I K      KE
Sbjct: 292 IAGLTTFGFWGMILGPAITAFFLTILKLFEARTKE 326


>gi|152964875|ref|YP_001360659.1| hypothetical protein Krad_0907 [Kineococcus radiotolerans SRS30216]
 gi|151359392|gb|ABS02395.1| protein of unknown function UPF0118 [Kineococcus radiotolerans
           SRS30216]
          Length = 423

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 104/312 (33%), Gaps = 11/312 (3%)

Query: 45  WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
           WP+     +         A ++ V ++ + +     L      +  ++    V       
Sbjct: 85  WPLAHVLRAVMP--RALAAGLSIVLLVAVVVGIFAALIPNVASQAGDVADSAVAG---LD 139

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
            V  W++  P  +   E+          L+  +++   +         A           
Sbjct: 140 QVQTWVAGPPLNLGDDEVGNLVNQGIAELQTNAQSIALSVVGGVGTVGA-----SVGSGL 194

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
           ++ + +++  FF   DG  +              +   +   +   IR   L    +A+ 
Sbjct: 195 ITFLLVLVLTFFCLSDGDRLLPWSRRWMGAQAHRHTVALGGRIWAAIRGYILSQAAVALV 254

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFL 283
           + + +G    + GVP  + L V     A IP  GA ++     +  L+      A  +  
Sbjct: 255 DAVFIGVGLAIIGVPFALPLAVTIFFAAFIPIVGAVVTGVLAVLVALVTLGWVQALIVLG 314

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              +   +    L+P LVG  + L        +  G    G++G F+   + A++ VI +
Sbjct: 315 IVLLVQQLEGNVLQPLLVGKSLALHPAVVIGSVTIGGTLFGIVGAFLAVPVAAILTVILR 374

Query: 344 ESIMAIKENKEK 355
                +  ++ +
Sbjct: 375 YVHHELVPDEPE 386


>gi|47528209|ref|YP_019558.1| hypothetical protein GBAA_2916 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|228915507|ref|ZP_04079096.1| hypothetical protein bthur0012_27260 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228927960|ref|ZP_04091005.1| hypothetical protein bthur0010_26630 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228934173|ref|ZP_04097012.1| hypothetical protein bthur0009_26320 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|229185124|ref|ZP_04312312.1| hypothetical protein bcere0004_26800 [Bacillus cereus BGSC 6E1]
 gi|47503357|gb|AAT32033.1| putative membrane protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|228598381|gb|EEK56013.1| hypothetical protein bcere0004_26800 [Bacillus cereus BGSC 6E1]
 gi|228825341|gb|EEM71135.1| hypothetical protein bthur0009_26320 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228831650|gb|EEM77242.1| hypothetical protein bthur0010_26630 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228844154|gb|EEM89214.1| hypothetical protein bthur0012_27260 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 348

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 53/330 (16%), Positives = 127/330 (38%), Gaps = 5/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P+L AL + F   P+      KK        ++  + ++ L  V +  +    
Sbjct: 22  FISTLFFPILIALFLYFIFNPVLVFLEDKKVPR-NLAILLLYLFIITLTAVGVGVVVPTI 80

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +LV  +    + G     ++ D+        L T++    ++++  +  +LK + 
Sbjct: 81  SQQLMDLVKNMPGYIKEG---KVYIQDLSHHRLFEWLSTQNYVSIETIEKNAIEYLK-DI 136

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + +   A+    I  +  L I  +   LF+ ++DG +   +  SL    +     +I +
Sbjct: 137 PNTLTSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPGKAVSLLPESYREEGLRIIK 196

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              + + +   G  ++ I  G      Y++  +P    LG+I A   +IP   P    A 
Sbjct: 197 ETNETLSAYIQGQALVCIFVGAFTFIGYFIIDLPYAFVLGIIAAFTNIIPNLGPFIGAAP 256

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A  + +   I        + P ++   + +  L     ++G     G+
Sbjct: 257 AVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIILILGVGNFAGI 316

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G+ +   + A+   +    +   K  +  
Sbjct: 317 IGMILAVPVYAVTKTVVSNLVRLFKTKRSN 346


>gi|329667697|gb|AEB93645.1| permease [Lactobacillus johnsonii DPC 6026]
          Length = 393

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 50/328 (15%), Positives = 112/328 (34%), Gaps = 19/328 (5%)

Query: 25  YFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           + L  F       F P+L A I  +   P+      K +       +I  + +  + +  
Sbjct: 44  FVLNPFWTFFNAIFPPILVASIQYYLMDPVVDWMEKKLKVPR----IITIILLFVIVVGG 99

Query: 78  LLFLFYYGM----LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           L+++    +     +   LV       +        +   P          + +S  Q+ 
Sbjct: 100 LIWIINTLIPIIQHQTDSLVKNWPTYWKDAQKGFEKMIRDPRLNGVRGGINQAISDAQTK 159

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
              +      +  +      S    +     ++++     LFF  +DG  ++  +     
Sbjct: 160 MFKT----GQDSFNLALSNLSSAVNVITMIFMTLLTAPFVLFFMLKDGHRLNPYVTKFAP 215

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                 +  +   +   + S   G   +A   G++    Y + G+   + L V+  I+ M
Sbjct: 216 KKLQPSFSSLLSDINGAVASYIRGQITVAFWVGVMFAIGYSVIGLNYGITLAVLAGILNM 275

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP          +I L +  +      + +  AIE  +  + + P ++G  + +  + T 
Sbjct: 276 IPYFGTFIAFIPAIILGLISSPMMLIKVLIVFAIEQTLEGRVISPLVMGNKMNMNPVTTI 335

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             L+G     GL G+     + A+I +I
Sbjct: 336 LLLIGASAVAGLWGVIFAIPVYAVIKII 363


>gi|269128092|ref|YP_003301462.1| hypothetical protein Tcur_3895 [Thermomonospora curvata DSM 43183]
 gi|268313050|gb|ACY99424.1| protein of unknown function UPF0118 [Thermomonospora curvata DSM
           43183]
          Length = 529

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 40/339 (11%), Positives = 108/339 (31%), Gaps = 22/339 (6%)

Query: 21  LVSLYFL-------KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           ++  + L       +G    ++ ++ +     P        +      +AV+  + ++  
Sbjct: 205 VICAWLLFEAVTSARGVIVLIVVSMFLAVGLNPAVERLQRARLPRPGAVAVVF-LGLVLA 263

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           F+     +      ++   ++++          P ++  +       EL  ++    Q L
Sbjct: 264 FVAAGFAVIPPLTEQITNFINQL----------PSYIEQLGQNERIRELDREY----QVL 309

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           +   E     +            G        + + ++I   +F     +I      L  
Sbjct: 310 QKAQEAVTNPDFGQSAIDGVLGVGRALAGGVFNTLTVLILTLYFLGSLPTIKTFFYRLVP 369

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
               A    +   +   I     G   +A   G        +  VP  + L +   I A+
Sbjct: 370 RSRRARVALLGDEILARIGGYVAGTLTVASIAGTTAYIFLSIMQVPFALPLALFVGITAL 429

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP         ++  +     +F      ++  +   + +  + P ++   + +    T 
Sbjct: 430 IPLVGATIGATLACTVAFFDGMFTGIACVIFFVVYQQVENYIIHPRVMKRAVDVQPAVTI 489

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              + G   +G++G  +     A +A+I +E ++  +E 
Sbjct: 490 IAALVGGTLLGIVGALLAIPTAAALALIIREVVLPRQET 528


>gi|182440690|ref|YP_001828409.1| putative integral membrane protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326781364|ref|ZP_08240629.1| protein of unknown function UPF0118 [Streptomyces cf. griseus
           XylebKG-1]
 gi|178469206|dbj|BAG23726.1| putative integral membrane protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326661697|gb|EGE46543.1| protein of unknown function UPF0118 [Streptomyces cf. griseus
           XylebKG-1]
          Length = 377

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 46/324 (14%), Positives = 112/324 (34%), Gaps = 14/324 (4%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P++  L +   +WP+ + F+ +     +  A + TV  + +    +  +      E  EL
Sbjct: 47  PLIVGLFLTTLTWPL-ARFLRRLGWWPSLAASVVTVFSLLVGAGIVALIAVPVAGESGEL 105

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
              V+                    WA+           +  + + T    + +  +   
Sbjct: 106 ADGVIAGIDK------------VREWAAGPPLNIGDDQITGALDTATAQLQDSVGSVVTT 153

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
           A       ++  ++ +  +  +FFF +DG      L             +++    + + 
Sbjct: 154 AVTGVSTVVNGLVTAVLAVFLMFFFLKDGPRFLPWLTRQLPGRLATDVPEVASRCWETLG 213

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLI 271
           +       + + + + +G   W+ GVP  + L V+T + A +P  GA  +     +  L+
Sbjct: 214 AFVRSQAFVGLLDAVFIGLGLWILGVPLVLPLAVLTFVCAFVPIVGALFAGFVAVVIALV 273

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
                +A  +     +   +     +P +    + L        +  G    G++G  + 
Sbjct: 274 SNGPMDALLVLAIIVVVQQLEGNVFQPMIQSRGLGLHAATVLLAVTLGGSLAGVVGSLLA 333

Query: 332 PVLMALIAVIWKESIMAIKENKEK 355
             + A++ VIW      + E+  +
Sbjct: 334 VPVAAVLGVIWNYLREQLVEDAPE 357


>gi|228986008|ref|ZP_04146153.1| hypothetical protein bthur0001_26960 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229156497|ref|ZP_04284588.1| hypothetical protein bcere0010_26830 [Bacillus cereus ATCC 4342]
 gi|228627000|gb|EEK83736.1| hypothetical protein bcere0010_26830 [Bacillus cereus ATCC 4342]
 gi|228773720|gb|EEM22141.1| hypothetical protein bthur0001_26960 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 348

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 54/330 (16%), Positives = 126/330 (38%), Gaps = 5/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P+L AL + F   P+      KK        ++  + ++ L  V +  +    
Sbjct: 22  FISTLFFPILIALFLYFIFNPVLVFLEDKKVPR-NLAILLLYLFIITLTAVGVGVVVPTI 80

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +LV  +    + G     ++ D+        L T++    ++++  +  +LK + 
Sbjct: 81  SQQLMDLVKNMPGYIKEG---KVYIQDLSHHRLFEWLSTQNYVSIETIEKNAIEYLK-DI 136

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + I   A+    I  +  L I  +   LF+ ++DG +   +  SL    +     +I +
Sbjct: 137 PNTITSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPGKAVSLLPESYREEGLRIIK 196

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              + + +   G  ++ I  G      Y +  +P    LG+I A   +IP   P    A 
Sbjct: 197 ETNETLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIPNLGPFIGAAP 256

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A  + +   I        + P ++   + +  L     ++G     G+
Sbjct: 257 AVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIILILGVGNFAGI 316

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G+ +   + A+   +    +   K  +  
Sbjct: 317 IGMILAVPVYAVTKTVVSNLVRLFKTKRSN 346


>gi|228908670|ref|ZP_04072507.1| hypothetical protein bthur0013_28290 [Bacillus thuringiensis IBL
           200]
 gi|229046614|ref|ZP_04192264.1| hypothetical protein bcere0027_26370 [Bacillus cereus AH676]
 gi|229070388|ref|ZP_04203633.1| hypothetical protein bcere0025_25740 [Bacillus cereus F65185]
 gi|229080100|ref|ZP_04212628.1| hypothetical protein bcere0023_27480 [Bacillus cereus Rock4-2]
 gi|229145489|ref|ZP_04273873.1| hypothetical protein bcere0012_26420 [Bacillus cereus BDRD-ST24]
 gi|229151127|ref|ZP_04279334.1| hypothetical protein bcere0011_26740 [Bacillus cereus m1550]
 gi|229179199|ref|ZP_04306553.1| hypothetical protein bcere0005_25490 [Bacillus cereus 172560W]
 gi|228604097|gb|EEK61564.1| hypothetical protein bcere0005_25490 [Bacillus cereus 172560W]
 gi|228632341|gb|EEK88963.1| hypothetical protein bcere0011_26740 [Bacillus cereus m1550]
 gi|228637942|gb|EEK94388.1| hypothetical protein bcere0012_26420 [Bacillus cereus BDRD-ST24]
 gi|228703224|gb|EEL55682.1| hypothetical protein bcere0023_27480 [Bacillus cereus Rock4-2]
 gi|228712742|gb|EEL64672.1| hypothetical protein bcere0025_25740 [Bacillus cereus F65185]
 gi|228724701|gb|EEL76008.1| hypothetical protein bcere0027_26370 [Bacillus cereus AH676]
 gi|228851011|gb|EEM95828.1| hypothetical protein bthur0013_28290 [Bacillus thuringiensis IBL
           200]
          Length = 348

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 52/330 (15%), Positives = 127/330 (38%), Gaps = 5/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P+L AL + F   P+     +KK        ++  + ++ L  V +  +    
Sbjct: 22  FISTLFFPILIALFLYFIFNPVLIFLENKKVPR-NLAILLLYLFIITLTAVGVGVVVPTI 80

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +LV  +    + G     ++ ++        L T++    ++++  +  +LK + 
Sbjct: 81  SQQLMDLVKNMPGYIKEG---KVYIQELSHHRLFEWLSTQNYVSIETIEKNAIEYLK-DI 136

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + I   A+    I  +  L +  +   LF+ ++DG +   +  SL    +     +I +
Sbjct: 137 PNTITSSATALFGIITNVALVVFTVPFILFYMFKDGHAFPGKAVSLLPESYREEGLRIIK 196

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              + + +   G  ++ I  G      Y +  +P    LG+I A   +IP   P    A 
Sbjct: 197 ETNETLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIPNLGPFIGAAP 256

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A  + +   I        + P ++   + +  L     ++G     G+
Sbjct: 257 AVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIILILGVGNFAGI 316

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G+ +   + A+   +    +   K  +  
Sbjct: 317 IGMILAVPVYAVTKTVVSNLVRLFKTKRSN 346


>gi|15924349|ref|NP_371883.1| hypothetical protein SAV1359 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15926939|ref|NP_374472.1| hypothetical protein SA1192 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21282975|ref|NP_646063.1| hypothetical protein MW1246 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49483552|ref|YP_040776.1| hypothetical protein SAR1371 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49486202|ref|YP_043423.1| hypothetical protein SAS1299 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57650363|ref|YP_186247.1| hypothetical protein SACOL1395 [Staphylococcus aureus subsp. aureus
           COL]
 gi|82750951|ref|YP_416692.1| hypothetical protein SAB1215 [Staphylococcus aureus RF122]
 gi|87160805|ref|YP_493951.1| hypothetical protein SAUSA300_1254 [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195085|ref|YP_499885.1| hypothetical protein SAOUHSC_01358 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148267847|ref|YP_001246790.1| hypothetical protein SaurJH9_1420 [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393910|ref|YP_001316585.1| hypothetical protein SaurJH1_1448 [Staphylococcus aureus subsp.
           aureus JH1]
 gi|151221483|ref|YP_001332305.1| hypothetical protein NWMN_1271 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156979678|ref|YP_001441937.1| hypothetical protein SAHV_1347 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161509525|ref|YP_001575184.1| hypothetical protein USA300HOU_1293 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221140615|ref|ZP_03565108.1| hypothetical protein SauraJ_03131 [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253317046|ref|ZP_04840259.1| hypothetical protein SauraC_13104 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253733393|ref|ZP_04867558.1| permease [Staphylococcus aureus subsp. aureus TCH130]
 gi|255006147|ref|ZP_05144748.2| hypothetical protein SauraM_06750 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257425425|ref|ZP_05601850.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428085|ref|ZP_05604483.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430716|ref|ZP_05607098.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433476|ref|ZP_05609834.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436317|ref|ZP_05612364.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|257795586|ref|ZP_05644565.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|258413395|ref|ZP_05681671.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|258420499|ref|ZP_05683441.1| conserved hypothetical protein [Staphylococcus aureus A9719]
 gi|258424790|ref|ZP_05687664.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|258434729|ref|ZP_05688803.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|258444695|ref|ZP_05693024.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|258447470|ref|ZP_05695614.1| conserved hypothetical protein [Staphylococcus aureus A6300]
 gi|258449311|ref|ZP_05697414.1| conserved hypothetical protein [Staphylococcus aureus A6224]
 gi|258451757|ref|ZP_05699781.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|258454691|ref|ZP_05702655.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|262052169|ref|ZP_06024376.1| hypothetical protein SA930_0519 [Staphylococcus aureus 930918-3]
 gi|282892850|ref|ZP_06301085.1| membrane protein YrrI [Staphylococcus aureus A8117]
 gi|282903939|ref|ZP_06311827.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           C160]
 gi|282905704|ref|ZP_06313559.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908671|ref|ZP_06316492.1| sporulation integral membrane protein YtvI [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282910940|ref|ZP_06318743.1| sporulation integral membrane protein YtvI [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282914148|ref|ZP_06321935.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           M899]
 gi|282916620|ref|ZP_06324378.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           D139]
 gi|282919070|ref|ZP_06326805.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           C427]
 gi|282920627|ref|ZP_06328348.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|282924253|ref|ZP_06331927.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           C101]
 gi|282928918|ref|ZP_06336507.1| conserved hypothetical protein [Staphylococcus aureus A10102]
 gi|283770426|ref|ZP_06343318.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           H19]
 gi|283958123|ref|ZP_06375574.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|284024360|ref|ZP_06378758.1| hypothetical protein Saura13_07200 [Staphylococcus aureus subsp.
           aureus 132]
 gi|293501175|ref|ZP_06667026.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510137|ref|ZP_06668845.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M809]
 gi|293526728|ref|ZP_06671413.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           M1015]
 gi|294848364|ref|ZP_06789111.1| UPF0118 membrane protein YrrI [Staphylococcus aureus A9754]
 gi|295406303|ref|ZP_06816110.1| UPF0118 membrane protein YrrI [Staphylococcus aureus A8819]
 gi|295427873|ref|ZP_06820505.1| UPF0118 membrane protein YrrI [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296275470|ref|ZP_06857977.1| hypothetical protein SauraMR_03960 [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207987|ref|ZP_06924418.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297244532|ref|ZP_06928415.1| UPF0118 membrane protein YrrI [Staphylococcus aureus A8796]
 gi|297591166|ref|ZP_06949804.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300912071|ref|ZP_07129514.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304381064|ref|ZP_07363718.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|13701156|dbj|BAB42451.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247130|dbj|BAB57521.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21204414|dbj|BAB95111.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49241681|emb|CAG40369.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244645|emb|CAG43076.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57284549|gb|AAW36643.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           COL]
 gi|82656482|emb|CAI80904.1| probable membrane protein [Staphylococcus aureus RF122]
 gi|87126779|gb|ABD21293.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202643|gb|ABD30453.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147740916|gb|ABQ49214.1| protein of unknown function UPF0118 [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946362|gb|ABR52298.1| protein of unknown function UPF0118 [Staphylococcus aureus subsp.
           aureus JH1]
 gi|150374283|dbj|BAF67543.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156721813|dbj|BAF78230.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|160368334|gb|ABX29305.1| hypothetical membrane protein [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253728661|gb|EES97390.1| permease [Staphylococcus aureus subsp. aureus TCH130]
 gi|257271882|gb|EEV04020.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274926|gb|EEV06413.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278844|gb|EEV09463.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281569|gb|EEV11706.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284599|gb|EEV14719.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|257789558|gb|EEV27898.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|257839959|gb|EEV64427.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|257843447|gb|EEV67854.1| conserved hypothetical protein [Staphylococcus aureus A9719]
 gi|257844954|gb|EEV68994.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|257849090|gb|EEV73072.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|257850188|gb|EEV74141.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|257853661|gb|EEV76620.1| conserved hypothetical protein [Staphylococcus aureus A6300]
 gi|257857299|gb|EEV80197.1| conserved hypothetical protein [Staphylococcus aureus A6224]
 gi|257860588|gb|EEV83412.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|257863074|gb|EEV85838.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|259159913|gb|EEW44950.1| hypothetical protein SA930_0519 [Staphylococcus aureus 930918-3]
 gi|282313640|gb|EFB44033.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           C101]
 gi|282316880|gb|EFB47254.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           C427]
 gi|282319107|gb|EFB49459.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           D139]
 gi|282322216|gb|EFB52540.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           M899]
 gi|282325545|gb|EFB55854.1| sporulation integral membrane protein YtvI [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282327489|gb|EFB57781.1| sporulation integral membrane protein YtvI [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282330996|gb|EFB60510.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282589427|gb|EFB94517.1| conserved hypothetical protein [Staphylococcus aureus A10102]
 gi|282594289|gb|EFB99276.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|282595557|gb|EFC00521.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           C160]
 gi|282764847|gb|EFC04972.1| membrane protein YrrI [Staphylococcus aureus A8117]
 gi|283460573|gb|EFC07663.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           H19]
 gi|283790272|gb|EFC29089.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|285817037|gb|ADC37524.1| UPF0118 membrane protein YrrI [Staphylococcus aureus 04-02981]
 gi|290920800|gb|EFD97863.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291096180|gb|EFE26441.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467081|gb|EFF09599.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M809]
 gi|294825164|gb|EFG41586.1| UPF0118 membrane protein YrrI [Staphylococcus aureus A9754]
 gi|294968891|gb|EFG44913.1| UPF0118 membrane protein YrrI [Staphylococcus aureus A8819]
 gi|295128231|gb|EFG57865.1| UPF0118 membrane protein YrrI [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296887230|gb|EFH26132.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297178562|gb|EFH37808.1| UPF0118 membrane protein YrrI [Staphylococcus aureus A8796]
 gi|297576052|gb|EFH94768.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300886317|gb|EFK81519.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302332974|gb|ADL23167.1| putative transporter [Staphylococcus aureus subsp. aureus JKD6159]
 gi|302751190|gb|ADL65367.1| putative transporter [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304340373|gb|EFM06313.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|312438241|gb|ADQ77312.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|315131163|gb|EFT87147.1| hypothetical membrane protein [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315194277|gb|EFU24670.1| hypothetical membrane protein [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|315196382|gb|EFU26734.1| hypothetical membrane protein [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140309|gb|EFW32167.1| hypothetical protein HMPREF9528_01424 [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320143918|gb|EFW35690.1| hypothetical protein HMPREF9529_00703 [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 402

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 60/363 (16%), Positives = 140/363 (38%), Gaps = 20/363 (5%)

Query: 10  GIMRWMIMFIILVSL----YFLKGFF-------APVLSALIIGFTSWPIYSSFISKKEES 58
            ++  +++ I++       Y    F        AP++ +LI+ +   PI +     +   
Sbjct: 32  SLIALVLLGIVIFIFEKVSYVFDPFIIVFKTIAAPIIVSLILFYLFNPIVNMMERYRIPR 91

Query: 59  STFLAV--IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
              +++  +A V V+ L +  L+ +    +       S V  + Q+   +   +  I   
Sbjct: 92  VAGISIIYLAVVGVITLIVNLLIPIIGSQVD------SLVKNSPQYLEKLINSIDKIANN 145

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
            + S  +++      SL     + L      F  + A+ F     +  + I+     LFF
Sbjct: 146 TFFSSYYSQINDWLNSLPKKIPSMLSEFTDGFGSKIAT-FAETIANIGVVIVTTPFVLFF 204

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
             +DG    +   ++    F   +  +   +   + S   G  I++   G++L   Y + 
Sbjct: 205 MLKDGHHFKEFSTNIMPPKFRKDFHDLLEKMSVQVGSYIQGQIIVSFCIGILLFIGYSVI 264

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           G+   + L  I A+ +++P   P    + +I +    + +    L +   +  F+    +
Sbjct: 265 GLKYSLVLASIAAVTSVVPYLGPTIAISPAIVIAAITSPWMLLKLAVVWTLVQFVEGHFI 324

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            P ++G  +K+  L   F L+   + +G++G+ +G    A++ V+        K    + 
Sbjct: 325 SPNIMGKTLKIHPLTIIFILLCAGKLLGIVGVILGIPGYAILKVLVTHLFQLFKRRYNRF 384

Query: 357 SSN 359
             N
Sbjct: 385 YGN 387


>gi|229161773|ref|ZP_04289752.1| hypothetical protein bcere0009_25590 [Bacillus cereus R309803]
 gi|228621740|gb|EEK78587.1| hypothetical protein bcere0009_25590 [Bacillus cereus R309803]
          Length = 348

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 53/330 (16%), Positives = 128/330 (38%), Gaps = 5/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P+L AL + F   P+     +KK        ++  + ++ L  V +  +    
Sbjct: 22  FISTLFFPILIALFLYFVFNPVLVFLENKKVPR-NLAILLLYLFIITLAGVAIGVVVPTI 80

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +LV  +    + G     ++ ++        + T++    ++++  +   LK   
Sbjct: 81  SQQLMDLVKNMPTYIKEG---KIYIQELSHHRLFEWVSTQNYVSIETIEKNAIASLKE-I 136

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + I   A+    I  +  L I  +   LF+ ++DG +  ++  SL    +     +I +
Sbjct: 137 PNTITSSATAVFGIITNVALVIFTVPFILFYMFKDGHAFPRKAVSLLPESYREEGLRIIK 196

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              + + +   G +++ I  G      Y + G+P    LG+I A   +IP   P    A 
Sbjct: 197 ETNETLSAYIQGQSLVCIFVGAFTFIGYLIIGLPYAFVLGIIAAFTNIIPNLGPFIGAAP 256

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A  + +   I        + P ++   + +  L     ++G     G+
Sbjct: 257 AVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIILILGVGNFAGI 316

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G+ +   + A+   +    +   K  +  
Sbjct: 317 IGMILAVPVYAVTKTVVSNLVRLFKTKRNN 346


>gi|52142606|ref|YP_084224.1| permease [Bacillus cereus E33L]
 gi|222096407|ref|YP_002530464.1| hypothetical protein BCQ_2747 [Bacillus cereus Q1]
 gi|229139548|ref|ZP_04268119.1| hypothetical protein bcere0013_26580 [Bacillus cereus BDRD-ST26]
 gi|229197094|ref|ZP_04323831.1| hypothetical protein bcere0001_26450 [Bacillus cereus m1293]
 gi|51976075|gb|AAU17625.1| conserved hypothetical protein; possible permease [Bacillus cereus
           E33L]
 gi|221240465|gb|ACM13175.1| conserved hypothetical protein [Bacillus cereus Q1]
 gi|228586404|gb|EEK44485.1| hypothetical protein bcere0001_26450 [Bacillus cereus m1293]
 gi|228644095|gb|EEL00356.1| hypothetical protein bcere0013_26580 [Bacillus cereus BDRD-ST26]
          Length = 348

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 54/330 (16%), Positives = 126/330 (38%), Gaps = 5/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P+L AL + F   P+      KK        ++  + ++ L  V +  +    
Sbjct: 22  FISTLFFPILIALFLYFIFNPVLVFLEDKKVPR-NLAILLLYLFIITLTAVGVGVVVPTI 80

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +LV  +    + G     ++ D+        L T++    ++++  +  +LK + 
Sbjct: 81  SQQLMDLVKNMPGYIKEG---KLYIQDLSHHRLFEWLSTQNYVSIETIEKNAIEYLK-DI 136

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + I   A+    I  +  L I  +   LF+ ++DG +   +  SL    +     +I +
Sbjct: 137 PNTITSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPGKAVSLLPESYREEGLRIIK 196

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              + + +   G  ++ I  G      Y +  +P    LG+I A   +IP   P    A 
Sbjct: 197 ETNETLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIPNLGPFIGAAP 256

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A  + +   I        + P ++   + +  L     ++G     G+
Sbjct: 257 AVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIILILGVGNFAGI 316

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G+ +   + A+   +    +   K  +  
Sbjct: 317 IGMILAVPVYAVTKTVVSNLVRLFKTKRSN 346


>gi|229091915|ref|ZP_04223103.1| hypothetical protein bcere0021_27100 [Bacillus cereus Rock3-42]
 gi|228691396|gb|EEL45156.1| hypothetical protein bcere0021_27100 [Bacillus cereus Rock3-42]
          Length = 348

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 53/330 (16%), Positives = 126/330 (38%), Gaps = 5/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P+L AL + F   P+      KK        ++  + ++ L  V +  +    
Sbjct: 22  FISTLFFPILIALFLYFIFNPVLVFLEDKKVPR-NLAILLLYLFIITLTAVGVGVVVPTI 80

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +LV  +    + G     ++ D+        L T++    ++++  +  +LK + 
Sbjct: 81  SQQLMDLVKNMPGYIKEG---KVYIQDLSHHRLFEWLSTQNYVSIETIEKNAIEYLK-DI 136

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + +   A+    I  +  L I  +   LF+ ++DG +   +  SL    +     +I +
Sbjct: 137 PNTLTSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPGKAVSLLPESYREEGLRIIK 196

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              + + +   G  ++ I  G      Y +  +P    LG+I A   +IP   P    A 
Sbjct: 197 ETNETLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIPNLGPFIGAAP 256

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A  + +   I        + P ++   + +  L     ++G     G+
Sbjct: 257 AVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIILILGVGNFAGI 316

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G+ +   + A+   +    +   K  +  
Sbjct: 317 IGMILAVPVYAVTKTVVSNLVRLFKTKRSN 346


>gi|299821429|ref|ZP_07053317.1| possible permease [Listeria grayi DSM 20601]
 gi|299817094|gb|EFI84330.1| possible permease [Listeria grayi DSM 20601]
          Length = 396

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 58/326 (17%), Positives = 122/326 (37%), Gaps = 5/326 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            LK   AP++ A I+ +   P+       K +    + ++  V +  L ++   F+    
Sbjct: 47  ILKTVAAPIILAGILYYLFNPVVDWLEKHKWKRGWSIGLLYLVIIGALIVL-FSFVVPAV 105

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++  L++K               S         E    +LS          T    + 
Sbjct: 106 KDQIASLLNKFPDYWDKLTNELDNFSKTGLFDQIRERLNSNLSEITKTISSKGTGFVNSA 165

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           ID I  F      +     L+I+     LF+  +DG  + + +  L      A+ +++ +
Sbjct: 166 IDGIGSFVGTVTEV----VLAIVTTPFVLFYLLKDGKKLPEFILKLLPVNARAHSRQVLK 221

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
                I S   G  I++   G++L   Y + G+P  + L +I A  +++P   P      
Sbjct: 222 EANHQISSYIRGQIIVSFCIGILLYIGYLIIGLPYGLTLAIIAAFTSVVPYLGPAIAITP 281

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +I + I  + +    L +   +   +  K + P ++G  +K+  +   F ++      G+
Sbjct: 282 AIIIAIVVSPWLLLKLVVVWVLVQLLEGKFISPQIMGKSLKVHPITILFVILVAGNLFGV 341

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKE 351
           LG+       A++ V+   +    K 
Sbjct: 342 LGVIFAVPGYAVLRVVVMHTFDWFKR 367


>gi|65320191|ref|ZP_00393150.1| COG0628: Predicted permease [Bacillus anthracis str. A2012]
          Length = 357

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 53/330 (16%), Positives = 127/330 (38%), Gaps = 5/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P+L AL + F   P+      KK        ++  + ++ L  V +  +    
Sbjct: 31  FISTLFFPILIALFLYFIFNPVLVFLEDKKVPR-NLAILLLYLFIITLTAVGVGVVVPTI 89

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +LV  +    + G     ++ D+        L T++    ++++  +  +LK + 
Sbjct: 90  SQQLMDLVKNMPGYIKEG---KVYIQDLSHHRLFEWLSTQNYVSIETIEKNAIEYLK-DI 145

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + +   A+    I  +  L I  +   LF+ ++DG +   +  SL    +     +I +
Sbjct: 146 PNTLTSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPGKAVSLLPESYREEGLRIIK 205

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              + + +   G  ++ I  G      Y++  +P    LG+I A   +IP   P    A 
Sbjct: 206 ETNETLSAYIQGQALVCIFVGAFTFIGYFIIDLPYAFVLGIIAAFTNIIPNLGPFIGAAP 265

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A  + +   I        + P ++   + +  L     ++G     G+
Sbjct: 266 AVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIILILGVGNFAGI 325

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G+ +   + A+   +    +   K  +  
Sbjct: 326 IGMILAVPVYAVTKTVVSNLVRLFKTKRSN 355


>gi|229128253|ref|ZP_04257234.1| hypothetical protein bcere0015_26980 [Bacillus cereus BDRD-Cer4]
 gi|228655112|gb|EEL10969.1| hypothetical protein bcere0015_26980 [Bacillus cereus BDRD-Cer4]
          Length = 357

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/330 (15%), Positives = 127/330 (38%), Gaps = 5/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P+L AL + F   P+     +KK        ++  + ++ L  V +  +    
Sbjct: 31  FISTLFFPILIALFLYFIFNPVLIFLENKKVPR-NLAILLLYLFIITLTAVGVGVVVPTI 89

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +LV  +    + G     ++ ++        L T++    ++++  +  +LK + 
Sbjct: 90  SQQLMDLVKNMPGYIKEG---KVYIQELSHHRLFEWLSTQNYVSIETIEKNAIEYLK-DI 145

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + I   A+    I  +  L +  +   LF+ ++DG +   +  SL    +     +I +
Sbjct: 146 PNTITSSATALFGIITNVALVVFTVPFILFYMFKDGHAFPGKAVSLLPESYREEGLRIIK 205

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              + + +   G  ++ I  G      Y +  +P    LG+I A   +IP   P    A 
Sbjct: 206 ETNETLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIPNLGPFIGAAP 265

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A  + +   I        + P ++   + +  L     ++G     G+
Sbjct: 266 AVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIILILGVGNFAGI 325

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G+ +   + A+   +    +   K  +  
Sbjct: 326 IGMILAVPVYAVTKTVVSNLVRLFKTKRSN 355


>gi|220926415|ref|YP_002501717.1| putative phytochrome sensor protein [Methylobacterium nodulans ORS
           2060]
 gi|219951022|gb|ACL61414.1| putative phytochrome sensor protein [Methylobacterium nodulans ORS
           2060]
          Length = 805

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 53/352 (15%), Positives = 119/352 (33%), Gaps = 30/352 (8%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + + +  LYF +  F P   A+++ F   P+ +     +       AV+  V++  + I 
Sbjct: 26  IVLAIAGLYFGRDIFVPFALAILLSFALTPLVNWLRRWRLPR--IAAVLVAVTLAFILIA 83

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL--- 133
            + F+    ++++   +          I   +  +  PGG    ++ T      + +   
Sbjct: 84  GIAFVVGRQLVQLANNLPSYQTTITDKIRSLQ--ASAPGGGIVDKVTTTIKDVGKEISGE 141

Query: 134 --------------------KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
                               +      L+      +    +  G +      + + +I  
Sbjct: 142 QPADNAPAQTPGSRLGSGTAQEPVTVRLEAPRAKPLEIIQTVVGPLLAPLATAGLVVIFV 201

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           +F          + +   G        + I+    +V R   +   ++ +  G+ +G A 
Sbjct: 202 IFVLLEREDLRDRFIKLAGAGDLQKSTQAINDAAARVSRYLLMQ-LVVNLTYGIPIGIAL 260

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF--I 291
           +  GVP+ +  G++ A++  IP   P       I L +  +       ++ G       I
Sbjct: 261 YFIGVPNALLWGLLAAVLRFIPYLGPFLAALFPIALAVAVDPGWTMLFWVVGVFLAAELI 320

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            +  + P+L G    L  L      +      G +GLF+   L   + VI +
Sbjct: 321 SNNVIEPWLYGSSTGLSSLAIIMAAIFWTSLWGPVGLFLATPLTVCLVVIGR 372


>gi|152990120|ref|YP_001355842.1| hypothetical protein NIS_0371 [Nitratiruptor sp. SB155-2]
 gi|151421981|dbj|BAF69485.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 347

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 63/360 (17%), Positives = 137/360 (38%), Gaps = 24/360 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           + P   +  + + +    L     F   ++ A+++   S+ ++S F+ K        A  
Sbjct: 1   MKPIHFLGVLFLIVTYFVLKVFYPFLNTMIIAILLALASYKMHSYFMKKLPG-QVLPATA 59

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           +T  +  +F +P++++       +  +     L  Q       W+           L   
Sbjct: 60  STAVLAFIFFLPIIYIITNAATFVANI--DFDLLKQTIAQTKNWI--------VQTLQHN 109

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                 SL+   E F   N I+++ + A+  G    ++   I  ++I  FF    G  + 
Sbjct: 110 SWIKSDSLQKYFEQFDIQNIINWVIQTATFLGKKSANFFKDIFLILIFYFFANLYGKDLL 169

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
               ++         K +   +  V+   F  +   A+ EG++ G    + G  + + LG
Sbjct: 170 LYFQNIIP-FRKEDSKLLFENLAGVMGVVFNSIIATAVLEGILFGIIVQIYGY-NGIMLG 227

Query: 246 VITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL-------- 296
           ++    ++IP  G  I +  ++++     N   A  + L+  I +  +  T+        
Sbjct: 228 ILYGFASLIPVIGGIIMWLPITLHQYFLDNTTGAIVIALYSIIVISGIADTIIKPIIIKY 287

Query: 297 --RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             +  +    +++  L  FF +V G+ + G  G+ IGP ++ L   I K      K  +E
Sbjct: 288 IDQVMIEDEHVRINELLIFFSIVAGLTSYGFWGMIIGPAVITLFISILKIYPKITKLERE 347


>gi|300743806|ref|ZP_07072826.1| putative permease [Rothia dentocariosa M567]
 gi|300380167|gb|EFJ76730.1| putative permease [Rothia dentocariosa M567]
          Length = 448

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 61/310 (19%), Positives = 109/310 (35%), Gaps = 14/310 (4%)

Query: 53  SKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD 112
            K    +     IA + ++         L   G   ++  VS    A Q    +  WL  
Sbjct: 92  RKHGIRAGGATAIAELGMILGIA---ALLALTGQQLVRGFVSLTNNAIQGYQQLVDWLKG 148

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
           +   + A +L        Q++     T L         R  S  G    ++   ++  + 
Sbjct: 149 MGYELGADQLNQILNQIEQAVSNNPSTVL---------RSVSEVGSTAAEFATGVLITLF 199

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
            L FF  +G  I   +  L             R   K + +      ++A  + + +G  
Sbjct: 200 TLVFFLMEGERIWLFIVKLFPKQARDAVNGAGRAGWKSLGAYVRVQILVAAIDAVGIGVG 259

Query: 233 YWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
             + GVP  + LGV+  + + IP  GA IS     +  L+      A  +     +   +
Sbjct: 260 AAILGVPLAIPLGVLVFLGSFIPVIGALISGAVAVLLALVALGPVQALIMIGIVLLVQQL 319

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG-LFIGPVLMALIAVIWKESIMAIK 350
               L+P ++G  + L  L   F + GG    G  G LF  PVL  + +V+   +    +
Sbjct: 320 ESHILQPLIMGKAVSLHPLAVIFAVAGGSMIFGAAGALFAVPVLAVVNSVVRYLAARQWE 379

Query: 351 ENKEKISSNF 360
           ++ E     F
Sbjct: 380 DDPELRREEF 389


>gi|228946519|ref|ZP_04108834.1| hypothetical protein bthur0007_26630 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228813132|gb|EEM59438.1| hypothetical protein bthur0007_26630 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 348

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 53/330 (16%), Positives = 127/330 (38%), Gaps = 5/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P+L AL + F   P+      KK        ++  + ++ L  V +  +    
Sbjct: 22  FISTLFFPILIALFLYFIFNPVLVFLEDKKVPR-NLAILLLYLFIITLTAVGVGVVVPTI 80

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +LV  +    + G     ++ D+        L T++    ++++  +  +LK + 
Sbjct: 81  SQQLMDLVKNMPGYIKEG---KIYIQDLSHHRLFEWLSTQNYVSIETIEKNAIEYLK-DI 136

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + +   A+    I  +  L I  +   LF+ ++DG +   +  SL    +     +I +
Sbjct: 137 PNTLTSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPGKAVSLLPESYREEGLRIIK 196

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              + + +   G  ++ I  G      Y++  +P    LG+I A   +IP   P    A 
Sbjct: 197 ETNETLSAYIQGQALVCIFVGAFTFIGYFIIDLPYAFVLGIIAAFTNIIPNLGPFIGAAP 256

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A  + +   I        + P ++   + +  L     ++G     G+
Sbjct: 257 AVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIILILGVGNFAGI 316

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G+ +   + A+   +    +   K  +  
Sbjct: 317 IGMILAVPVYAVTKTVVSNLVRLFKTKRSN 346


>gi|288905039|ref|YP_003430261.1| hypothetical protein GALLO_0834 [Streptococcus gallolyticus UCN34]
 gi|306831112|ref|ZP_07464273.1| membrane protein [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325978008|ref|YP_004287724.1| membrane protein [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
 gi|288731765|emb|CBI13326.1| hypothetical membrane protein [Streptococcus gallolyticus UCN34]
 gi|304426678|gb|EFM29789.1| membrane protein [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325177936|emb|CBZ47980.1| membrane protein [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
          Length = 395

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 71/361 (19%), Positives = 138/361 (38%), Gaps = 21/361 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLY--------------FLKGFFAPVLSALIIGFTSWPIYSSF 51
           LN Q ++  +I F++ ++LY              F+     P++ + I+ +   P+   F
Sbjct: 19  LNNQAVVAVLITFLVFLTLYLFTKISFLFTPIISFIAIIMLPLVISAILYYLIKPLVD-F 77

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS 111
           I K+  S T    I    ++ L I  +         ++   V  +    +          
Sbjct: 78  IEKRGVSRTTSIFIVFAIIIALLIWAVASFIPTIQEQLTSFVENLPSYVRSINVEANKFL 137

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
           + P      E   + LS+  +  I        N ID+   FAS    +     ++II   
Sbjct: 138 ESPWLANYQEELEEMLSNVSTKAIDYAESFSKNAIDWASNFASAIARVT----VAIIMSP 193

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
             LF+F RD   + + L             ++   + K +     G   +AI  G++   
Sbjct: 194 FILFYFLRDSGKMKEGLLKTLPTRMRRPISRVLGDINKQLAGYVQGQVTVAIVVGIMFTI 253

Query: 232 AYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
            + + G+      G+I   + MIP  G+ ++   V I  +++G I     + +   +E  
Sbjct: 254 FFNIIGLRYAATFGIIAGFLNMIPYLGSFLAMVPVVIMGVVQGPIML-IKVLITFVVEQT 312

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           I  + + P ++G  + +  +   F L+      G+ G+F+G  + A I V+ KE     K
Sbjct: 313 IEGRFVSPLVLGSKLSIHPITIMFILLTSGSMFGVWGVFLGIPIYASIKVVVKEIFEWYK 372

Query: 351 E 351
            
Sbjct: 373 R 373


>gi|289433861|ref|YP_003463733.1| hypothetical protein lse_0494 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170105|emb|CBH26645.1| membrane protein, putative [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 389

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 124/326 (38%), Gaps = 5/326 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            LK   AP++ A I  +   P+      KK +    +A++  V +  + ++   F+    
Sbjct: 47  ILKTVAAPIVLAGISYYLFNPVIDWLEKKKWKRGWAIALLYVVIIGLIILL-FSFVIPAV 105

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++  L             + +  ++        +L  K  ++   +         +  
Sbjct: 106 KDQIISLFKTFPGYWD---QITQKFNEFSQSSLFDQLKDKLSTNMSDIMKTLSEKGTSVL 162

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              I    S  G +  +  L+I+   + LF+  +DG  +   L  +      A+ +++  
Sbjct: 163 NSAITSVGSIVGTVT-EVVLAIVTTPLVLFYLLKDGKKLPDFLLKMLPVNGRAHTRQVLG 221

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
                I S   G  I+++  G++L   Y + G+P  + L +I A  +++P   P      
Sbjct: 222 EANHQISSYIRGQIIVSLCIGILLFIGYLIIGLPYALTLAIIAACTSIVPYLGPAIAITP 281

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +I + I  + +    L +   +   +  K + P ++G  +K+  +   F ++      G+
Sbjct: 282 AIIIAIVTSPWLLVKLVIVWCVVQLLEGKFISPQVMGKTLKVHPITILFVILIAGNLFGV 341

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKE 351
           LG+       A++ VI     +  K 
Sbjct: 342 LGVIFAVPGYAVLKVIVTHVFIWFKR 367


>gi|329766855|ref|ZP_08258383.1| hypothetical protein HMPREF0428_00080 [Gemella haemolysans M341]
 gi|328837580|gb|EGF87205.1| hypothetical protein HMPREF0428_00080 [Gemella haemolysans M341]
          Length = 382

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/319 (13%), Positives = 124/319 (38%), Gaps = 11/319 (3%)

Query: 37  ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV 96
           A +  +   P+ + F  K   S    +++A +  +   ++ ++ +    + + + L++ +
Sbjct: 72  AYVFYYMLNPLVNFFSKKI--SRFSASLLAILVGIITILIVIIGVVPIIVEQTQNLITAM 129

Query: 97  VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
               +         SD        E    +L+  +         +    I  +   A   
Sbjct: 130 PRYIEIVKGYLEEYSDNAYVQVVVEYVNTNLNASK---------ISARLITIVTSVAQGI 180

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
                     ++ M   LFF  +D    ++ + SL          +    + + + S   
Sbjct: 181 VSSISSTASVLVTMPFVLFFLLKDASKFNKFVISLLPKKLEKPVAETIDEIDEKVGSYIQ 240

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIF 276
           G  ++++  G++L   Y + G+    +L  I A ++++P   P+     ++ +    +  
Sbjct: 241 GQMLVSLCIGVMLFIGYNVIGLHYAFSLATIAAFLSIVPYLGPVIAITPAMLVAASTSWV 300

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
               + +   +  F+    + P ++G  + +  L   F ++ GV   G++G  +G  + +
Sbjct: 301 MVVKMLVVWGVVQFLEGNIISPNIMGRSMNMHPLTVIFVILIGVNISGVVGAILGIPVYS 360

Query: 337 LIAVIWKESIMAIKENKEK 355
           ++ V+  + ++++K+  +K
Sbjct: 361 ILKVLISKLLISLKDRYDK 379


>gi|21323795|dbj|BAB98421.1| Predicted permease [Corynebacterium glutamicum ATCC 13032]
          Length = 440

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/338 (15%), Positives = 119/338 (35%), Gaps = 17/338 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFF---APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
            +    +   + +  + +  F+    PV  A+II        S    +K    + ++   
Sbjct: 14  SLRLVFVAAAVFILWWVIGRFWQGVLPVTLAIIICTVLSSPNSWL--RKHGVPSVVSAFI 71

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           T+      +  +L+L    + +  +++          I +  WL   P  + + +L    
Sbjct: 72  TIGTFFAVVGAILWLIAPSIAQQSQVLYFQAFEGILSIQL--WLQGPPLNLDSGDL---- 125

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                     +  +L+           S  G       +++  +++  FFF +DG     
Sbjct: 126 ----SRYFNEAAAWLQNQAGAIAGEIFSGLGAAT-SVIVTLGVVLVLTFFFLKDGHRFLP 180

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
               +G      +  ++       +        +++  + + +G    + GVP  +AL V
Sbjct: 181 WTRKIGGKQAGWHVTELLTRAWTTLSGFVRAQALVSAVDAVFIGIGLLIVGVPMALALSV 240

Query: 247 ITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           IT +   IP     +  A+++ + L+      A  + +       +    L P L    +
Sbjct: 241 ITFVAGFIPIIGAFTAGALAVLVALVSLGFTEAVIVLVIVVAVQQLEGNILSPLLQSKAM 300

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L  +     +  G    G++G F+   + A+IAV ++
Sbjct: 301 NLHPVIVLLSVTVGGTLFGIVGAFLAVPVAAMIAVFFR 338


>gi|323488048|ref|ZP_08093301.1| hypothetical protein GPDM_01865 [Planococcus donghaensis MPA1U2]
 gi|323398316|gb|EGA91109.1| hypothetical protein GPDM_01865 [Planococcus donghaensis MPA1U2]
          Length = 395

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/336 (16%), Positives = 129/336 (38%), Gaps = 3/336 (0%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+K    P++ AL+  +   PI    + K +    +  +I  + ++ L  +  + +F + 
Sbjct: 53  FMKTVVLPIVLALVFFYLLRPIL-RLLEKFKIPRIWGIIIIFLGLVGLITLLSVLVFPFL 111

Query: 86  MLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
             + + L++       Q    V  +L     G + SE      +   +L       L+  
Sbjct: 112 RSQFQNLIADFPEYFMQLVTAVDGFLRTSLVGDYYSESNFTLDTLLATLPDNIADTLQNT 171

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               I         I     LSI+ +   LF+  +DG  + +    L    F    +++ 
Sbjct: 172 VTGIISGITGLISTIT-GVILSIVIVPFILFYLLKDGEKLPEYFLKLLPPRFRDDTREVF 230

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
               K + +   G  I+A   G+++   + + G+   + LGV+  + +++P   P    A
Sbjct: 231 SEANKQLGAYIQGQLIVAFCIGVMVYIGFLIIGMEYALLLGVLAMVTSVVPYIGPAIAIA 290

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            +  + +  + F    L +   +   +    + P ++G  + +  +   F L+      G
Sbjct: 291 PAAIIALVTSPFMLVKLAIVWTVVQLVEGNLISPQVMGKTMFIHPVTIIFVLLTAGSLFG 350

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           ++G+ +G  + AL+ V+        K    +  +N 
Sbjct: 351 VVGVILGIPMYALLRVLVSHFYKLFKRRYNRHETNL 386


>gi|69248263|ref|ZP_00604697.1| Protein of unknown function UPF0118 [Enterococcus faecium DO]
 gi|257880214|ref|ZP_05659867.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257883015|ref|ZP_05662668.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257885259|ref|ZP_05664912.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257891402|ref|ZP_05671055.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257893601|ref|ZP_05673254.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|258614402|ref|ZP_05712172.1| hypothetical protein EfaeD_01713 [Enterococcus faecium DO]
 gi|260560488|ref|ZP_05832662.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|261209005|ref|ZP_05923410.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289565183|ref|ZP_06445635.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|293553266|ref|ZP_06673903.1| transport protein [Enterococcus faecium E1039]
 gi|293563307|ref|ZP_06677757.1| transport protein [Enterococcus faecium E1162]
 gi|293569303|ref|ZP_06680601.1| transport protein [Enterococcus faecium E1071]
 gi|293570983|ref|ZP_06682026.1| transport protein [Enterococcus faecium E980]
 gi|294614981|ref|ZP_06694870.1| transport protein [Enterococcus faecium E1636]
 gi|294619071|ref|ZP_06698566.1| transport protein [Enterococcus faecium E1679]
 gi|294621470|ref|ZP_06700639.1| transport protein [Enterococcus faecium U0317]
 gi|68194478|gb|EAN08977.1| Protein of unknown function UPF0118 [Enterococcus faecium DO]
 gi|257814442|gb|EEV43200.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257818673|gb|EEV46001.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257821111|gb|EEV48245.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257827762|gb|EEV54388.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257829980|gb|EEV56587.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|260073490|gb|EEW61818.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|260077044|gb|EEW64766.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289163004|gb|EFD10852.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|291588009|gb|EFF19859.1| transport protein [Enterococcus faecium E1071]
 gi|291592112|gb|EFF23732.1| transport protein [Enterococcus faecium E1636]
 gi|291594732|gb|EFF26114.1| transport protein [Enterococcus faecium E1679]
 gi|291598964|gb|EFF30012.1| transport protein [Enterococcus faecium U0317]
 gi|291602676|gb|EFF32891.1| transport protein [Enterococcus faecium E1039]
 gi|291604759|gb|EFF34243.1| transport protein [Enterococcus faecium E1162]
 gi|291608909|gb|EFF38188.1| transport protein [Enterococcus faecium E980]
          Length = 372

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/334 (17%), Positives = 115/334 (34%), Gaps = 7/334 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F    FAPVL A  + +   PI    + K +    +   I  + ++   I  LL +    
Sbjct: 40  FFSTLFAPVLIAGFLYYLLNPI-VKLLMKAKIKRIWAVAIVLLLLVAAIIWILLSVIPSL 98

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  L S +    +      + ++++P            ++       +S   +    
Sbjct: 99  VQQISSLASNMPDFIKQVESWLKEVAELPLFKEVD------INKYFEQLDISYGTIIQQF 152

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +               + II     LF+  +DG  +   +             ++  
Sbjct: 153 LSGVSNSLGSIVGTIASATVVIITAPFILFYMLKDGEKLVPNIQQFFPEKRRNQIVELLG 212

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K + +   G  I  +  G      Y + GV      GVI  +  +IP   P    A 
Sbjct: 213 QLNKTLANYISGQAIECLFVGTFTFLGYMVIGVDYAFLFGVIAGLTNLIPYLGPYLGLAP 272

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +  + +  +   A    +   I   +    + P ++G  +K+  L     L+      GL
Sbjct: 273 AFLVTVFNDPVKALLCCVVVLIVQQLDGNIIYPNVIGKSLKIHPLTIIIVLLVAGNIAGL 332

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           LG+F+G    A+   I    I  +KE+K+  +  
Sbjct: 333 LGIFLGVPFYAICKTIISYIIKIVKEDKQNENKK 366


>gi|308174870|ref|YP_003921575.1| integral inner membrane protein [Bacillus amyloliquefaciens DSM 7]
 gi|307607734|emb|CBI44105.1| putative integral inner membrane protein [Bacillus
           amyloliquefaciens DSM 7]
          Length = 449

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/324 (17%), Positives = 119/324 (36%), Gaps = 6/324 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           FI      F+   F P+L + I+ F   PI      K     T   ++  +  + L    
Sbjct: 109 FIFQPFFGFISTLFFPILISGILFFIFNPIVRLLEKKIP--RTLAILLIYLVFIGLIAFM 166

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
              +      ++  L +           +   LS      W + + T+     + ++   
Sbjct: 167 FTAIGPIVASQVTGLFNNFPDYINQIQSLTTQLSH---SKWFTWMMTQDYVSIEKIQQSL 223

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
             FL++   +     ++ FG++  +  L +I +   LF+  +DG         +    + 
Sbjct: 224 TGFLQSLPQNITASLSAVFGVVT-NITLVVITVPFILFYMLKDGRRFPLLAVKILPSSYR 282

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
           A  +KI   +   + + F G  +I +  G      YW+ G+P  + LG++ A+  +IP  
Sbjct: 283 AEGRKIFNDLYVTLAAYFQGQLLICLFVGTACFIGYWIIGLPYALILGMVIAVTNIIPYL 342

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P    A ++ +    +   A    +   +   +    L P ++G  +    L     LV
Sbjct: 343 GPFLGAAPAVIIAFMDSPAKALFAVIVVVVVQQLDGNLLSPLVIGKRLNTHPLTIILLLV 402

Query: 318 GGVRTMGLLGLFIGPVLMALIAVI 341
           G     G+L + +   + A++   
Sbjct: 403 GAGSFGGILAMILAVPVYAVLKAF 426


>gi|199598004|ref|ZP_03211428.1| Predicted permease [Lactobacillus rhamnosus HN001]
 gi|229552624|ref|ZP_04441349.1| possible permease [Lactobacillus rhamnosus LMS2-1]
 gi|258540000|ref|YP_003174499.1| membrane protein [Lactobacillus rhamnosus Lc 705]
 gi|199591094|gb|EDY99176.1| Predicted permease [Lactobacillus rhamnosus HN001]
 gi|229314016|gb|EEN79989.1| possible permease [Lactobacillus rhamnosus LMS2-1]
 gi|257151676|emb|CAR90648.1| Conserved membrane protein [Lactobacillus rhamnosus Lc 705]
          Length = 392

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/342 (16%), Positives = 117/342 (34%), Gaps = 7/342 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           F+      F      P++SA  + +   PI    + +   S     ++  + V+   ++ 
Sbjct: 32  FLFAPVATFFSTLLIPIISAGFLFYLFNPI-VKLLQRLHISRNVSILLIFLVVIGAIVLI 90

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           ++ +    + ++ + V+ +    +    V  ++S      W   L      +  SL+I  
Sbjct: 91  VMAVLPNLIYQITQFVTNIPDFLKG---VRTFISKASHYTWYQRL--NIGKYVASLQISP 145

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              L      F        G       +SII + + LF+F +DG +    +  L    + 
Sbjct: 146 SKLLSQVLGGFSSGLPGVIGS-LASTVISIITIPVMLFYFLKDGENFVPSIQRLLPRRYH 204

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
           A    +   +   +     G  I  +  G      Y + G+P    LG I  ++ +IP  
Sbjct: 205 AEVATVFTRLNATLSHYIGGQAIECLFVGTFTFIGYLIIGMPYAYLLGFIAGVVTIIPYL 264

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P    A ++ +           + L   I        + P ++G  + +  L     L+
Sbjct: 265 GPYIGIAPALIIAATEGWTKMLLVVLVVVIIQMTDGNFIYPNVIGRSLDIHPLTIIILLM 324

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                 GLLG  +     A+I  +        + ++E  +  
Sbjct: 325 VAGNLWGLLGTILAVPTYAVIKTVITYLYELYRFHQEHKNDE 366


>gi|330506790|ref|YP_004383218.1| hypothetical protein MCON_0564 [Methanosaeta concilii GP-6]
 gi|328927598|gb|AEB67400.1| protein of unknown function (DUF20) [Methanosaeta concilii GP-6]
          Length = 346

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/340 (15%), Positives = 115/340 (33%), Gaps = 29/340 (8%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++  +   ++     F   F   ++   +  +   PI   F  +K+  S   A+      
Sbjct: 16  LILALAAVLMTACFAF--PFLDGIILGSVFAYVGRPIRDRFGKRKKLGSLVAAI------ 67

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
               +VP+  +   G LE+   +  +    +                W   L  +  +  
Sbjct: 68  --CVVVPIFLMLGLGSLEVATQIIALAKNQEALRY------------WLGYLMQQTATDL 113

Query: 131 QSLKILSETFLKTNGIDFIPRFASRF-----GMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            S    S      N    I   A+       G +     ++ +      +F   DG    
Sbjct: 114 PSWARESLLSGLENAFGLIASLAASIPILQIGRMASLGIINFLISFPICYFILLDGEGFV 173

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L SL         ++    + +++   F+G    +I   L+    ++L  +P  +AL 
Sbjct: 174 GSLISLLPDGEMRVLERYIDRIDRILSGIFIGTVYTSIVGSLIAAVIFFLFDIPRPIALA 233

Query: 246 VITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFI-VDKTLRPFLVGG 303
            I  I  M+P          +++Y      +  A    +  +  +++  +  +RP+++  
Sbjct: 234 SIVFIAGMVPVLTSWAVLVPLAVYRYFTVGLEGALFFLVISSALIYLPSELFIRPYIIST 293

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              L  L       GG    G+ G F+ P ++  I+ I++
Sbjct: 294 RSSLHPLLVMLSFFGGALVAGIGGFFLAPAVIGAISGIYQ 333


>gi|311113049|ref|YP_003984271.1| integral membrane protein [Rothia dentocariosa ATCC 17931]
 gi|310944543|gb|ADP40837.1| integral membrane protein [Rothia dentocariosa ATCC 17931]
          Length = 448

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/308 (18%), Positives = 105/308 (34%), Gaps = 13/308 (4%)

Query: 53  SKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD 112
            K    +     IA + ++         L   G   ++  VS    A Q    +  WL  
Sbjct: 92  RKHGIRAGGATAIAELGMILGIA---ALLALTGQQLVRGFVSLTNNAIQGYQQLVDWLKG 148

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
           +   + A +L        Q++     T L         R  S  G    ++   ++  + 
Sbjct: 149 MGYELGADQLNQILNQIEQAVSNNPSTVL---------RSVSEVGSTAAEFATGVLITLF 199

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
            L FF  +G  I   +  L             R   K + +      ++A  + + +G  
Sbjct: 200 TLVFFLMEGERIWLFIVKLFPQQARDAVNGAGRAGWKSLGAYVRVQILVAAIDAVGIGVG 259

Query: 233 YWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
             + GVP  + LGV+  + + IP  GA IS     +  L+      A  +     +   +
Sbjct: 260 AAILGVPLAIPLGVLVFLGSFIPVIGALISGAVAVLLALVALGPVQALIMIGIVLLVQQL 319

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
               L+P ++G  + L  L   F + GG    G  G      ++A++  + +       E
Sbjct: 320 ESHILQPLIMGKAVSLHPLAVIFAVAGGSMIFGAAGALFAVPVLAVVNSVVRYLAARQWE 379

Query: 352 NKEKISSN 359
           N  ++   
Sbjct: 380 NDPELRRE 387


>gi|92114233|ref|YP_574161.1| hypothetical protein Csal_2111 [Chromohalobacter salexigens DSM
           3043]
 gi|91797323|gb|ABE59462.1| protein of unknown function UPF0118 [Chromohalobacter salexigens
           DSM 3043]
          Length = 363

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/336 (13%), Positives = 123/336 (36%), Gaps = 8/336 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           ++  L  L+    P    +I+ +   P+     ++       ++V+  V  + + +  L+
Sbjct: 15  LVWLLVLLEPILMPFFVGMILAYLGDPVTDWLEARGLSRRLSVSVVFLVLALNIVLACLV 74

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            +   G    +   S   + N     V   +  + G   +++      +   + +     
Sbjct: 75  LIPLLGRQLAQLAESFPAIFNWVQTTVLPEVQSLTGVDLSADFDQLRSTLMDNWRET--- 131

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
                    +   AS+ GM    +  ++  + +  F+F  D   +  +L  L        
Sbjct: 132 ---GTVAAAVLAQASKSGMAVAVWLGNLALIPVTTFYFLLDWDRLKARLRDLMPRHVEPT 188

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             ++ R   +V+ +   G  ++ +   ++      L G+   + +G++  + +++P    
Sbjct: 189 ITRLGRECDEVLSAFLRGQLLVMLSLAVIYAVGLSLLGLRFGLLIGLVAGLASIVPYLGV 248

Query: 260 ISFTAVS--IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
           I   +++  +     G       + L   +   +    L+P L+G  I L  +   F ++
Sbjct: 249 IVGISIAALVAFFQFGEWLPLLGVALVFGVGQVVESTLLQPVLLGDKIGLHPIAVIFAVL 308

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            G +  G  G+ +   + A++ V+ +      K ++
Sbjct: 309 AGGQLFGFTGILLALPVAAIVMVVLRYLHERYKNSR 344


>gi|261405442|ref|YP_003241683.1| hypothetical protein GYMC10_1593 [Paenibacillus sp. Y412MC10]
 gi|329926788|ref|ZP_08281196.1| putative membrane protein [Paenibacillus sp. HGF5]
 gi|261281905|gb|ACX63876.1| protein of unknown function UPF0118 [Paenibacillus sp. Y412MC10]
 gi|328938988|gb|EGG35356.1| putative membrane protein [Paenibacillus sp. HGF5]
          Length = 355

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/340 (16%), Positives = 128/340 (37%), Gaps = 13/340 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           W++  + L    FLK   AP L A+II +   PI  +   +K   S        ++V+ +
Sbjct: 27  WLLRPLFLDVYRFLKAVLAPFLVAMIISYVLNPIVCTLSDRKVPRS--------IAVLLI 78

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           + V L  L    +  +  L+ ++   N+H   +      +   + +  L     +   S 
Sbjct: 79  YAVFLTSLAVILINMIPMLIRQLEELNEHLPELSMNAQSLMTNLDSRLLPPGVRTGVNSW 138

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            +  E+ L     DF+           ++   +++ +   +F+  +D     +   S   
Sbjct: 139 FLQMESRLAGGISDFMDNIG-----NTINILFNVLIVPFLIFYILKDFEVFQRTAVSYLP 193

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                    + + +   + +   G  ++ +  G++    Y + G+P  + L  I A+  +
Sbjct: 194 RSRRKSIVTLLKEIDTALGNYVRGQFLVCLIIGVLAYVGYMIVGMPYALLLASIVAVFNI 253

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P    A ++ +    +      + +   +   +    + P +VG  + +  L   
Sbjct: 254 IPYLGPFLGAAPALVMASTISWRMVLLVAVVNMVCQTLESNVISPQVVGKKLHMHPLLII 313

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           F L+ G +  G +GL +   + A+I V+ +         K
Sbjct: 314 FALLVGGQVAGTVGLILAVPVFAVIKVLLQHVFAYYVRKK 353


>gi|315641191|ref|ZP_07896268.1| permease [Enterococcus italicus DSM 15952]
 gi|315482958|gb|EFU73477.1| permease [Enterococcus italicus DSM 15952]
          Length = 379

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/316 (16%), Positives = 110/316 (34%), Gaps = 6/316 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F    F PVL A  + +   P+ S    +          +  + ++   ++ ++ +    
Sbjct: 40  FFSTLFIPVLIAGFLYYLLNPVVSLLTERFHFKRILAIALVFILLIVALVLIVVSVIPNL 99

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++ +L + +         V  WL +I    W  ++         +L   S   +  N 
Sbjct: 100 VNQIAQLATNIPSFVS---DVESWLYNISQTEWLKKVDVMEELDKFNLSYGS---ILQNF 153

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +            +  + +I     LF+  +DG      ++ +      +    +  
Sbjct: 154 LSGLSSSLGSIVSTIANAAMIVITAPFILFYMLKDGHKFVPNVEKVLSPKRSSQVSDLMG 213

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K + +   G  I  +  G      YWL GV      GVI  +  +IP   P      
Sbjct: 214 QLNKTLSNYISGQAIECLFVGTFTFLGYWLIGVDFAFLFGVIAGLANLIPYLGPYFGLLP 273

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + I  + F A    +   +   +    + P ++G  + +  L     L+      GL
Sbjct: 274 AVLVTIFNDPFKALLCCIVVLVVQQLDGNIIYPNVIGKSLAIHPLTIIIVLLVAGNLAGL 333

Query: 326 LGLFIGPVLMALIAVI 341
           LG+F+G    A+   I
Sbjct: 334 LGIFLGVPFYAICRTI 349


>gi|258508822|ref|YP_003171573.1| membrane protein [Lactobacillus rhamnosus GG]
 gi|257148749|emb|CAR87722.1| Conserved membrane protein [Lactobacillus rhamnosus GG]
 gi|259650126|dbj|BAI42288.1| putative transporter protein [Lactobacillus rhamnosus GG]
          Length = 392

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/342 (16%), Positives = 117/342 (34%), Gaps = 7/342 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           F+      F      P++SA  + +   PI    + +   S     ++  + V+   ++ 
Sbjct: 32  FLFAPVATFFSTLLIPIISAGFLFYLFNPI-VKLLQRLHISRNVSILLIFLVVIGAIVLI 90

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           ++ +    + ++ + V+ +    +    V  ++S      W   L      +  SL+I  
Sbjct: 91  VMAVLPNLIYQITQFVTNIPDFLKG---VRTFISKASHYTWYQRL--NIGKYVASLQISP 145

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              L      F        G       +SII + + LF+F +DG +    +  L    + 
Sbjct: 146 SKLLSQVLGGFSSGLPGVIGS-LASTVISIITIPVMLFYFLKDGENFVPSIQRLLPRRYH 204

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
           A    +   +   +     G  I  +  G      Y + G+P    LG I  ++ +IP  
Sbjct: 205 AEVATVFTRLNATLSHYIGGQAIECLFVGTFTFIGYLIIGMPYAYLLGFIAGVVTIIPYL 264

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P    A ++ +           + L   I        + P ++G  + +  L     L+
Sbjct: 265 GPYIGIAPALIIAATEGWTKMLLVVLVVVIIQMTDGNFIYPNVIGRSLDIHPLTIIILLM 324

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                 GLLG  +     A+I  +        + ++E  +  
Sbjct: 325 VAGNLWGLLGTILAVPTYAVIKTVITYLYELYRFHQEHKNDE 366


>gi|219853173|ref|YP_002467605.1| protein of unknown function UPF0118 [Methanosphaerula palustris
           E1-9c]
 gi|219547432|gb|ACL17882.1| protein of unknown function UPF0118 [Methanosphaerula palustris
           E1-9c]
          Length = 363

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 64/364 (17%), Positives = 129/364 (35%), Gaps = 24/364 (6%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLK-----GFFAPVLSALIIGFTSWPIYSSFISKKE 56
           R  ++  + ++   ++ +++  +  L           VL AL I   S P++  F     
Sbjct: 14  RGALVQQRDLIEQWLIVLVIAGIGVLTTVAFFPLLGIVLFALSIAMVSMPLHRRFQRFM- 72

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
              +  A++ TV V  +  V         ++E  + +  VV    +              
Sbjct: 73  -RPSISAMLVTVCVGLVLTV-CTVATVAVLVENSDFIQLVVQTVLN-------------- 116

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
            WA       +S    +     T    + I         +     D  + I+   +AL+ 
Sbjct: 117 -WAVSSQGGSISLGIPIDAAQITSGVNDLIAQFTTSLKSWIEQIPDLLMDIVIFFLALYL 175

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
           F   G  +  ++             + S +    + S ++    IA+    +    + + 
Sbjct: 176 FLEQGERLWLEILKNIPARSRRVASRFSEMAVDTMYSVYVVHLAIAVVTFFLSIPFFMVL 235

Query: 237 GVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
           G    +   V+  +  ++P  G  +    V  Y L  G++     +   G     + D  
Sbjct: 236 GYGHVLFFAVLCGVFQLVPFLGQTVILLFVGGYALALGDVRGILLVIFIGYPIAAVPDVV 295

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +RP L+G  +++     F G  GG+  MG +G  +GP+LMAL+   +K +I      +E 
Sbjct: 296 MRPLLMGQKMQVHPAILFIGFFGGIAVMGAIGFVLGPLLMALLVAAYKIAIEEFGAGREG 355

Query: 356 ISSN 359
              N
Sbjct: 356 DKDN 359


>gi|328958006|ref|YP_004375392.1| putative integral inner membrane protein [Carnobacterium sp. 17-4]
 gi|328674330|gb|AEB30376.1| putative integral inner membrane protein [Carnobacterium sp. 17-4]
          Length = 401

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/329 (15%), Positives = 115/329 (34%), Gaps = 9/329 (2%)

Query: 27  LKGFFA----PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           ++ F +    PV+ A ++ +   P+      KK      +  I  V    +       + 
Sbjct: 52  IRDFLSIIGLPVILAGVLYYLVNPLVDWMERKKIPRLLGITWIFIVIGALIVWGITTLIP 111

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                 +  + +     +     +  WL         SE  T+      +L         
Sbjct: 112 IIQEQTISIIGNWPTYWDNIVSQIDSWLRS----DVLSEFQTRLSDFNTNLMSNVSDQAD 167

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                      S  G +  +  ++II M   LF+  +DG ++   +  +          +
Sbjct: 168 GFVGSTFASIGSVVGALT-NVIIAIITMPFILFYLLKDGKNLPYHVMKIVPSKMRVSMYQ 226

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   +   I     G  ++A   GL+    + + G+   V LGV+   + ++P       
Sbjct: 227 LLSEINMQISQYIRGQLMVAFFVGLMFWLGFAIIGLEYAVTLGVLAGFLNLVPYLGSFLA 286

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
           T  +I + +  +      + +  AIE  I  + ++P ++G  +++  L     L+   + 
Sbjct: 287 TVPAIVIALVDSPSMLIKVLIVFAIEQTIEGRVIQPQILGNNLEVHPLTIIIVLLSAGKI 346

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            G+ G+ +G    A++ VI        K+
Sbjct: 347 FGVPGVILGIPGYAVLKVIVVHFFRWYKD 375


>gi|21229405|ref|NP_635327.1| hypothetical protein MM_3303 [Methanosarcina mazei Go1]
 gi|20907998|gb|AAM32999.1| hypothetical protein MM_3303 [Methanosarcina mazei Go1]
          Length = 366

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/322 (14%), Positives = 123/322 (38%), Gaps = 19/322 (5%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
            ++  L+  + + PI   F   ++        I  +       VP++F+   G++E+   
Sbjct: 43  GIVLGLVFAYIARPIQVKFGKYRK--------IGALVASLCIFVPIVFIIGAGIVEILNQ 94

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
            S  +   ++   V   + +    +   + + + L++  ++  L  + L   G   +  +
Sbjct: 95  FSWFI---ENQASVMNGILEFIHSLQIPDAYVERLNN--AIWNLFTSLLPAFGSIGLIAY 149

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
           A   G+    + ++ +  I   +F   DG  +      +    +     + +  +  +++
Sbjct: 150 AQSIGL----FVINFVISIFFCYFLLADGDRLYCAFLGVIPGDYQPIVNRYAAHLDLILK 205

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYLLI 271
             F+G    A+   +     ++  G    +AL  +  I ++IP  A  +    ++I    
Sbjct: 206 GVFIGNAYSALIVSVTSVFVFYAFGFTHVLALATLIFIASVIPLFAGYMVLVPLAIVRYF 265

Query: 272 KGNIFNATCLFLWGAIEL-FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              + +A+  F+  ++ +    +  LRP+L     K+  +      +GG    G+ G F 
Sbjct: 266 DQGVESASLFFIVSSLVIYGPPELILRPYLTSLKSKIHPMLLMLAFLGGAFVGGIAGFFA 325

Query: 331 GPVLMALIAVIWKESIMAIKEN 352
            P+L+  +   ++     I   
Sbjct: 326 APILLGALVAAYRVYQEQIHPE 347


>gi|268319844|ref|YP_003293500.1| hypothetical protein FI9785_1373 [Lactobacillus johnsonii FI9785]
 gi|262398219|emb|CAX67233.1| conserved hypothetical protein [Lactobacillus johnsonii FI9785]
          Length = 388

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/320 (15%), Positives = 110/320 (34%), Gaps = 12/320 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F    F P+L A I  +   P+      K +       +I  + +  + +  L+++    
Sbjct: 52  FFNAIFPPILVASIQYYLMDPVVDWMEKKLKVPR----IITIILLFVIVVGGLIWIINTL 107

Query: 86  M----LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
           +     +   LV                +   P          + +S  Q+    +    
Sbjct: 108 IPIIQHQTDSLVKNWPTYWNDAQKGFEKMIRDPRLNGVRGGINQAISDAQTKMFKT---- 163

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             +  +      S    +     ++++     LFF  +DG  ++  +  +        + 
Sbjct: 164 GQDSFNLALSNLSSAVNVITMIFMTLLTAPFVLFFMLKDGHRLNPYVTKIAPKKLQPSFS 223

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            +   +   + S   G   +A   G++    Y + G+   + L V+  I+ MIP      
Sbjct: 224 SLLSDINGAVASYIRGQITVAFWVGVIFAIGYSVIGLNYGITLAVLAGILNMIPYFGTFI 283

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               +I L +  +      + +  AIE  +  + + P ++G  + +  + T   L+G   
Sbjct: 284 AFIPAIILGLISSPMMLIKVLIVFAIEQTLEGRVISPLVMGNKMNMNPVTTILLLIGASA 343

Query: 322 TMGLLGLFIGPVLMALIAVI 341
             GL G+     + A+I +I
Sbjct: 344 VAGLWGVIFAIPVYAVIKII 363


>gi|268679846|ref|YP_003304277.1| hypothetical protein Sdel_1219 [Sulfurospirillum deleyianum DSM
           6946]
 gi|268617877|gb|ACZ12242.1| protein of unknown function UPF0118 [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 355

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 132/356 (37%), Gaps = 29/356 (8%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL--- 62
           +     + W+ +  + V ++    F   +  AL++  T  P+    +    + ++     
Sbjct: 1   MKNNTFLIWLSIATLCVLIWLFAPFLKSLGVALLLALTMAPLQRFLLKLLTQKTSLSTAK 60

Query: 63  -----AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                A + T+ +  +  +PL   F+        ++  +   +          S I   +
Sbjct: 61  KNLFSAALMTLFLSLIIFLPLSLFFFQLFQHPTTIIETIRTFD----------SQIHLDI 110

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                +      P    I+     K   I  + ++       FL     ++ +I+  FFF
Sbjct: 111 TLLPSYLSWAKEPFETLIMLSNMHKDEIIALLSKWLGSGLKTFLGMLSEMVMIIVFFFFF 170

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
              G S+   L  +   L     ++    +   +   F  +  + + +GL  G       
Sbjct: 171 NLYGRSLFLFLIPIVP-LSRTIKRQFISEMSITLSVVFYTLLGVMVTQGLAFGLFIAFFD 229

Query: 238 VPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWG-AIELFIVDKT 295
             + + LG +  I ++IP  G  + +  V+I    +G++ NA  + L+  A+  F +D  
Sbjct: 230 GYNALLLGFLAGISSVIPIVGTALVWIPVAISEYWQGDVMNAVIIALYSWAMMAFFIDNI 289

Query: 296 LRPFLV--------GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           ++  ++        GG ++      FF +V G+   G  G  IGP L+AL   + K
Sbjct: 290 VKLLMLNYVNRSMNGGEVRTNEFIIFFSIVAGLGAFGFWGFIIGPALVALAISVLK 345


>gi|163940666|ref|YP_001645550.1| hypothetical protein BcerKBAB4_2721 [Bacillus weihenstephanensis
           KBAB4]
 gi|163862863|gb|ABY43922.1| protein of unknown function UPF0118 [Bacillus weihenstephanensis
           KBAB4]
          Length = 361

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/330 (16%), Positives = 128/330 (38%), Gaps = 5/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P+L AL + F   P+     +KK        ++  + ++ L  V +  +    
Sbjct: 35  FISTLFFPILIALFLYFIFNPLLVFLENKKVPR-GLAILLLYLFIITLTGVAIGVVVPTI 93

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +LV  +    + G     ++ D+        L T++    ++++  +  +LK   
Sbjct: 94  SQQLMDLVKNMPTYIKEG---KVYIQDLSHHRLFEWLSTQNYVSIETIEKNAIEYLKEIP 150

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
                   + FG+I  +  L I  +   LF+ ++DG +   +  S+    +     +I +
Sbjct: 151 NTLTSSATALFGIIT-NVALVIFTVPFILFYMFKDGHAFPGKAVSVLPESYREEGLRIIK 209

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              + + +   G  ++ +  G    + Y + G+P    LG+I A   +IP   P    A 
Sbjct: 210 ETNETLSAYIQGQALVCMFIGAFTFTGYLIIGLPYAFVLGIIAAFTNIIPNLGPFIGAAP 269

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A  + +   I        + P ++   + +  L     ++G     G+
Sbjct: 270 AVIIGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIILILGVGNFAGI 329

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G+ +     A+   +    +   K  + K
Sbjct: 330 IGMILAVPAYAVTKTVVSNLVRLFKTKRSK 359


>gi|73669708|ref|YP_305723.1| hypothetical protein Mbar_A2217 [Methanosarcina barkeri str.
           Fusaro]
 gi|72396870|gb|AAZ71143.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 351

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/330 (16%), Positives = 122/330 (36%), Gaps = 11/330 (3%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +F+I V++Y  K FF+ +L +  I +   P+YS   S+ +           ++     ++
Sbjct: 16  IFVIAVAIYITKSFFSVILFSFFIAYLLVPLYSYLESRIKYRR--------IAAAASVLL 67

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L      G+  +  +V++V+        + +   +I   +        H +  +    +
Sbjct: 68  ALTIFILIGIRIIYVVVNEVLTLLNSPENLQQLTKNITSRVIKIIEVNVHFNSSEVTNQV 127

Query: 137 SETFLKTNGIDFIPRFASRF--GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
            +  L      F P  +             ++II  +I  ++F   G     QL +    
Sbjct: 128 DQFILSLTDTYFPPTKSLVIFLTATLPFDIVAIIVALIFSYYFLLTGNKSIDQLLNFVPD 187

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 K   + +  +    F    + +   G++     +L  V     L  +  +++M 
Sbjct: 188 KNEKEIKLFLKELDVIYSGLFRQHFVTSAIIGVIALIGLYLLDVSYPGVLASLIFLLSMY 247

Query: 255 P-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P  G P  +  ++ Y ++  +   A  + ++      + D  LRP L+     +  + T 
Sbjct: 248 PLVGLPGIYLPLTAYYILLQDYNKALQILIFSLALNTLQDYYLRPKLIQEKGSVHPVITI 307

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                 +  +G+ GL IGP +   +  +++
Sbjct: 308 IAFGAPLLVIGITGLVIGPAVYGFLLALYR 337


>gi|303237018|ref|ZP_07323590.1| putative membrane protein [Prevotella disiens FB035-09AN]
 gi|302482798|gb|EFL45821.1| putative membrane protein [Prevotella disiens FB035-09AN]
          Length = 376

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 67/367 (18%), Positives = 142/367 (38%), Gaps = 19/367 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFA----PVLSALIIGFTSWPIYSSFISKKE 56
           M +  +     +RW+++  ++ S+ ++  + +    P   A ++ +   P+ +    K +
Sbjct: 1   MLDEKITFDKFIRWVLIAALVFSILYIVNYLSHVLLPFFIAWLLAYLLNPVVNFVQHKMK 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLF-LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
                LAVI T+ ++   I  +++ +    + + ++L +      Q   P          
Sbjct: 61  VKVRALAVIITMLLVVAIITGVMYTIIPPMVDQFEKLGAVANRYVQQNTPSNNL------ 114

Query: 116 GMWASELWTKHLSHPQSLKILSE-TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
             W  +   ++L          + T    N I  +     +   I L    S+I ++  L
Sbjct: 115 TAWIKDWIQEYLPQINEYFKSKDFTETIKNAIPKLFTVVGQTASIVLSIVASLITLLY-L 173

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           FF   D   + +    +      ++WK + + V   +     G  ++A+  G++    + 
Sbjct: 174 FFILLDYDYLVKNFVRIFPKKHRSFWKDLMQDVETEMNKYIRGQGLVALTMGILFCIGFT 233

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI----KGNIFNATC--LFLWGAIE 288
           + G P  + +G++  I+ +IP    ++   ++   L+    KG  F        L  AI 
Sbjct: 234 IIGFPMAIGMGILIGILTLIPYLHSLALIPMAFLSLLEAADKGQNFWVVFGTAILVFAII 293

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             + D  + P ++G  + L        L      +G +GL I   L  LI   WK  +  
Sbjct: 294 QLLCDLVVTPRIMGKTMNLNPAILLLSLSVWGALLGFIGLIIALPLTTLIIAYWKRYVTK 353

Query: 349 IKENKEK 355
             ENK+K
Sbjct: 354 EDENKQK 360


>gi|310644432|ref|YP_003949191.1| hypothetical membrane protein [Paenibacillus polymyxa SC2]
 gi|309249383|gb|ADO58950.1| Hypothetical membrane protein [Paenibacillus polymyxa SC2]
          Length = 381

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 125/318 (39%), Gaps = 5/318 (1%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           +  LK    PV+ + ++ +   P+       K +    + V+  + +  + IV +  +  
Sbjct: 48  IVLLKTIILPVILSGVLYYLLNPLVDVLERNKVKRVYSIVVLFLLIIGIIAIV-ITSVVP 106

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
               +++ L+  V    +    V +    + G  + ++        P  L   +   L  
Sbjct: 107 VIRDQIQGLIQNVPAYTE---QVKQQFERLIGSNFVNQFQNTIQIDPSELASKASEKLSG 163

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
              +      S  G+I  +  L+I  +   LF+  +DG  + Q +  +   +F     +I
Sbjct: 164 FINNAWTGVGSFLGVIT-ETVLAIATVPFILFYLLKDGHKLPQWILKMLPPMFRKETDRI 222

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
              +   + S   G  I++   G++L   Y + G+   + L VI +  +++P   P+   
Sbjct: 223 MTEMNHQVSSYIRGQIIVSFCIGVLLYIGYLIIGLDYSLTLAVIASFTSVVPYLGPVIAI 282

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++ + I  +      + +   +   I  K + P ++G  +++  +   F ++      
Sbjct: 283 TPALIVAIVTSPIMLLKMVIVWTVVQLIEGKFISPQIMGKSLRVHPITIIFVILTAGNLF 342

Query: 324 GLLGLFIGPVLMALIAVI 341
           G++G+ +     A++ VI
Sbjct: 343 GVVGIVLAVPGYAVLKVI 360


>gi|229191014|ref|ZP_04318004.1| hypothetical protein bcere0002_26780 [Bacillus cereus ATCC 10876]
 gi|228592412|gb|EEK50241.1| hypothetical protein bcere0002_26780 [Bacillus cereus ATCC 10876]
          Length = 348

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/330 (15%), Positives = 126/330 (38%), Gaps = 5/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P+L AL + F   P+     +KK        ++  + ++ L  V +  +    
Sbjct: 22  FISTLFFPILIALFLYFIFNPVLIFLENKKVPR-NLAILLLYLFIITLTAVGVGVVVPTI 80

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +LV  +    + G     ++ ++        L T++    ++++  +  +LK + 
Sbjct: 81  SQQLMDLVKNMPGYIKEG---KVYIQELSHHRLFEWLSTQNYVSIETIEKNAIEYLK-DI 136

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + I   A+    I  +  L +  +   LF+ ++DG +   +  SL    +     +I +
Sbjct: 137 PNTITSSATALFGIITNVALVVFTVPFILFYMFKDGHAFPGKAVSLLPESYREEGLRIIK 196

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              + + +   G  ++ I  G      Y +  +P    LG+I A   +IP   P    A 
Sbjct: 197 ETNETLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIPNLGPFIGAAP 256

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +      A  + +   I        + P ++   + +  L     ++G     G+
Sbjct: 257 AVIVGLFVFPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIILILGVGNFAGI 316

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G+ +   + A+   +    +   K  +  
Sbjct: 317 IGMILAVPVYAVTKTVVSNLVRLFKTKRSN 346


>gi|296273984|ref|YP_003656615.1| hypothetical protein Arnit_2458 [Arcobacter nitrofigilis DSM 7299]
 gi|296098158|gb|ADG94108.1| protein of unknown function UPF0118 [Arcobacter nitrofigilis DSM
           7299]
          Length = 355

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 59/343 (17%), Positives = 134/343 (39%), Gaps = 28/343 (8%)

Query: 13  RWMIMFIILVSLYFL----KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           ++ ++ I +++ YFL      F   +  AL++   +  + ++   K + +    + + T+
Sbjct: 4   QYFLISIGVITFYFLIELFNPFLKAMSVALLLAVATNTLSNNVSIKIK-NKFISSTLMTI 62

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  +F +PLL+  +     +  +  + +  ++       W++ +P            L 
Sbjct: 63  VLAFVFFIPLLYCIFSFATLINNIDQQAL--SKMLTKFESWVALLP---------NDFLI 111

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             + L            I+ +  F +  G     + + ++ ++I  FFF      +S  L
Sbjct: 112 IKEQLTDAISKINIKEFIESLLSFGAYLGKNSAKFIIDMVMILIFYFFFNFYSVELSSYL 171

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            SL   L       +      V+      +   AI EG + G      G    + LGV+ 
Sbjct: 172 KSLLP-LKKEDASVLFFESSTVMSVVLYSVLATAILEGFLFGIFITFFGYDG-ILLGVLY 229

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI-VDKTLRPFLV----- 301
              ++IP  G  I +  +++Y     ++ N   + ++  + + I  D  ++P ++     
Sbjct: 230 GFASLIPVVGGLIMWLPMALYEGFTVSLTNGLIIAIYSVVVIAIFADTFVKPVIIKYINL 289

Query: 302 ---GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                   +  L  FF ++ G+ T G  G+ IGP +++    I
Sbjct: 290 KVVKTKANINELLIFFSIIAGLSTFGFWGMIIGPAMVSFFISI 332


>gi|221195860|ref|ZP_03568913.1| putative membrane protein [Atopobium rimae ATCC 49626]
 gi|221184334|gb|EEE16728.1| putative membrane protein [Atopobium rimae ATCC 49626]
          Length = 470

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/315 (11%), Positives = 108/315 (34%), Gaps = 2/315 (0%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           +    I+ F   P+ +   + K   +   A+IA + V+ + +  +  +    + E   L+
Sbjct: 53  LAIGGIVAFICAPLTNKLETWKVPRA-LSALIALIVVLLILVGFIALIAQPLIDESLILL 111

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
               L  +    + +  + I      +      ++                   ++   A
Sbjct: 112 RNAPLYARQIQDMVQE-AWITYDAIGNSAVRSTVNSIILQASNLGVSFAGEAFRWLSANA 170

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
                   ++ +S    ++  ++  +D   + ++L  +         + +  I+ + +  
Sbjct: 171 LSNISTLGEHFMSFFLGLVLAYWLAKDYPVMVRELAVIAGPQRDDEVRLLLAILSRSVGG 230

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
                 + +I  G++          P    +G I  ++ +IP   P+    +++ L +  
Sbjct: 231 YMRSTIVTSIANGVLAYVGCLCIQNPYAGLIGTIVGVLHIIPVVGPVFSAGIALILSVLQ 290

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
           +        L   +   + D  L P ++   +K+    +  G++ G    G++G  +   
Sbjct: 291 SPMLGLWTLLVLVVAQNVTDNVLSPVVMASSVKVHPGLSLVGIMIGGALGGIVGTILAIP 350

Query: 334 LMALIAVIWKESIMA 348
           + A +  ++     A
Sbjct: 351 ITAALRGVFVYYFEA 365


>gi|227505861|ref|ZP_03935910.1| integral membrane protein [Corynebacterium striatum ATCC 6940]
 gi|227197559|gb|EEI77607.1| integral membrane protein [Corynebacterium striatum ATCC 6940]
          Length = 430

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 53/344 (15%), Positives = 126/344 (36%), Gaps = 22/344 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLS--------ALIIGFTSWPIYSSFISKKEESST 60
             + +  ++FII+V+   L G+    +         A+++    +P+ +   + K   + 
Sbjct: 58  ISLAKVCLVFIIVVAGVGLAGYLLKFIWVGLLPVILAILVCTVLFPVTNWLRAHKFPRA- 116

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             ++   +  + +       +      +   LVS+        + +     D+P  + A+
Sbjct: 117 LASITTLLGFLAIIGGVFAAMAPVVSSQGASLVSQAEGGLNKLVDMA---KDLPFEIDAA 173

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           ++        Q +   +  F+K           S    +     ++++ M+   FF  +D
Sbjct: 174 KV--------QEVLDDAIAFIKGQASQIATGVISGV-SMASSIVMALVIMLFVAFFILKD 224

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G      L +   +    +  ++   V   +         +A  + +++G   W   VP 
Sbjct: 225 GDKFLPWLRTYTGYSAGWHATELLTRVWNTLSGFIQAQAAVAAVDAILIGLGLWALQVPL 284

Query: 241 HVALGVITAIMAMIPGGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            + +GV+T   + IP    ++  A++ I  L+   +  A        I   +    L+P 
Sbjct: 285 ALVIGVVTFFASFIPVIGAVTAGALAVIIALVSDGLTKALLALALIIIVQQVEGNVLQPM 344

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L    + L        +  G    G++G F+   + A IAV+++
Sbjct: 345 LQSKAMGLHAAMVLLSVTVGSALAGIIGAFLAVPVAATIAVVFR 388


>gi|315230246|ref|YP_004070682.1| hypothetical protein TERMP_00482 [Thermococcus barophilus MP]
 gi|315183274|gb|ADT83459.1| hypothetical membrane protein [Thermococcus barophilus MP]
          Length = 346

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 60/356 (16%), Positives = 132/356 (37%), Gaps = 30/356 (8%)

Query: 6   LNPQGIMRWMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +  + ++   I  IIL  ++  ++   +P++ +L I +   P +     K     +  AV
Sbjct: 1   MKTESLVWLGISLIILFLVWRTVEPLISPIIFSLAIAYIFHPFHMRLSQKFGNKKS--AV 58

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           + T  +  L  V L+    +    +  L   +                          W 
Sbjct: 59  MLTAMMALLAGVLLIGAALWLRDVLNYLYVYIGDFFN---------------------WL 97

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             ++ P  +        KT   + +      +      + L  I  +   +    +   +
Sbjct: 98  LGVNLPFGIGESLHALSKT-IPEKLGDILLGYTFSLPKFLLQAIVFLALFYAILTNSEFL 156

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV---PSH 241
           + ++  L           +       + +      ++++ +G+ L   + L  +      
Sbjct: 157 AMEVYRLLPRENRELGIHLVERAKITLNAILRTWLMLSVLKGIFLTVGFVLFEITTVSGA 216

Query: 242 VALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPF 299
           +A G++  ++ ++P  G  I +   + YL+  GNI       ++GA+ +  I D T+RP 
Sbjct: 217 IAAGILCIVLELLPVIGGWILWAIGAAYLIKTGNIALGVLFAVYGAVFISPIPDITIRPK 276

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           LV    K+  +    G+ GG+ + G+ G+ IGPV + L+  + +E     KE   K
Sbjct: 277 LVAEGAKVSSVVALVGIFGGIMSFGIKGVIIGPVALGLLVTLLEEWKEQEKETLSK 332


>gi|326201133|ref|ZP_08191005.1| protein of unknown function UPF0118 [Clostridium papyrosolvens DSM
           2782]
 gi|325988701|gb|EGD49525.1| protein of unknown function UPF0118 [Clostridium papyrosolvens DSM
           2782]
          Length = 349

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 118/319 (36%), Gaps = 11/319 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P   A +I +  +P+   F  K     +   ++  V +    I   +++    +   K
Sbjct: 35  LFPFFIAALIAYIIYPMVIRFERK-GVKRSVSIIMIYVFIALTLIFFGIYIMPEVLSNAK 93

Query: 91  ELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           EL   +  + N +       +S I    W  E+     +         + +        +
Sbjct: 94  ELFKTLPNITNSYQEYFNNCISRIKASKWPPEVKNLIFNEINYGSGFLQIYAGRIMKKTL 153

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
              AS   +      L+I+  +I  ++F +D  ++      L        +    R +  
Sbjct: 154 SVLASSIVI-----ILNIVLSMIIAYYFLKDAETLKNSTLMLVPKKMRNDFINTGRELNA 208

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIY 268
           +      G    A+  G +     +LAG+     LG++  +  MIP  G  +        
Sbjct: 209 IATHFIQGQLTTALIVGSMETIGLYLAGIKYPFVLGLLGGVANMIPYFGPFLGAIPAVAV 268

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDK-TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            L++     A    ++  I +  +D   + P ++ G + L  + T   ++ G    G++G
Sbjct: 269 ALLQSPYKAALAALVF--IVVQQIDNAFISPKIIEGKLGLHPVTTIIAVLVGGEFFGIIG 326

Query: 328 LFIGPVLMALIAVIWKESI 346
           + IG  + A++ VI+K++I
Sbjct: 327 MLIGVPVAAMLKVIFKKAI 345


>gi|227534733|ref|ZP_03964782.1| permease [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227187489|gb|EEI67556.1| permease [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 399

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 56/329 (17%), Positives = 114/329 (34%), Gaps = 17/329 (5%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           F+      F      P+LSA  + +   PI    + K   S     ++  + V+   ++ 
Sbjct: 39  FLFAPVATFFSTLLIPILSAGFLFYLFNPI-VKLLQKFHISRNISILLIFLVVIGALVLV 97

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS--DIPGGMWASELWTKHLSHP---QS 132
            + +    + ++ + V+ +          P +L    +     +   W + L+      S
Sbjct: 98  FMAVLPNLIYQVTQFVTNI----------PDFLKGVRLFISKASHYTWYQRLNIGKYVAS 147

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           L+I     L      F     +  G +     +SII + + LF+F +DG +    +  + 
Sbjct: 148 LQISPSKVLSKVLGGFSTGLPTVIGSVA-SMMISIITIPVMLFYFLKDGENFVPSIQKML 206

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            H +      +   +   +     G  I  +  G      Y + G+P    LG I  I+ 
Sbjct: 207 PHRYHEEVATVFTRLNSTLSHYIGGQAIECLFVGTFTFIGYLIIGMPYAYLLGFIAGIVT 266

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +IP   P    A ++ +           + +   I        + P ++G  + +  L  
Sbjct: 267 IIPYLGPYIGIAPALAIAATEGWTKMLLVVVVVVIIQMTDGNFIYPNVIGRSLDIHPLTI 326

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
              L+      GLLG  +     A+I  +
Sbjct: 327 IILLMVAGNLWGLLGTILAVPTYAVIKTV 355


>gi|262044145|ref|ZP_06017219.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038517|gb|EEW39714.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 137

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 1/115 (0%)

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
            ++GVP    L V+     ++  G  +      I+L   G+    T L +W    +  +D
Sbjct: 1   AVSGVPYAALLTVVMIFTCLVQLGPLLVLVPSIIWLYWSGDTTWGTVLLVWSC-VVGTMD 59

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             +RP L+     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  
Sbjct: 60  NVIRPVLIRMGADLPMILILTGVIGGLIAFGMIGLFIGPVLLAVSWRLYDAWVHE 114


>gi|227548170|ref|ZP_03978219.1| membrane protein [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079731|gb|EEI17694.1| membrane protein [Corynebacterium lipophiloflavum DSM 44291]
          Length = 468

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 63/344 (18%), Positives = 114/344 (33%), Gaps = 20/344 (5%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFA-------PVLSALIIGFTSWPIYSSFISKKEESST 60
               M  + + II V LY L            PV+ A+I+     PI      +    S 
Sbjct: 37  KSAAMTVLRILIICVFLYALSRLIGTFWQGILPVILAIIVCTVLAPIAGFLRRRAHFPSA 96

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A+I+ +    L    +  +        + L  +     Q    +  WL   P  M   
Sbjct: 97  LAALISLLIFFGLIGTLVFLIAPDIAAHSRVLYLQAFEGIQR---LQLWLQGPPINMDPD 153

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +L         ++    +    T   D      +  G+I     + ++        F +D
Sbjct: 154 DL----NEAVNTVAQWLQNQAGTIAGDVFAGIGTAAGLIVTLTVVLVLTFF-----FLKD 204

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G      L +        +  ++       +        I+++ +   +G   WL GVP 
Sbjct: 205 GPRFLPWLRATAGGRPGLHATELLTRAWNTLSGFIRAQAIVSLVDAFFIGVGIWLVGVPM 264

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSI-YLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
              L VIT I   IP    +   A+++   L+      A  + L       +    L P 
Sbjct: 265 AFTLSVITFIAGFIPIVGAVVAGALAVLIALVSLGFTEAIIVLLIVLAVQQLEGNVLSPV 324

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L    + L  +     +  G    GL+G F+   + A+IAV+++
Sbjct: 325 LQSKAMDLHPVIVLVSVTIGGGLFGLVGAFLAVPVAAMIAVVFR 368


>gi|110668328|ref|YP_658139.1| permease [Haloquadratum walsbyi DSM 16790]
 gi|109626075|emb|CAJ52526.1| predicted transporter (predicted permease) [Haloquadratum walsbyi
           DSM 16790]
          Length = 417

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 131/356 (36%), Gaps = 32/356 (8%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSL-YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M    ++   +  W+I F +  +L + +  F   ++  L   + + P+Y     +     
Sbjct: 1   MSSRTIDRTQLAWWVIGFALAGALIFVVYSFIGTIVFGLFFYYATRPLYQRINRQIGP-P 59

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
           +  A IA + +     + +L+       E+ +L ++ ++         + L+ I      
Sbjct: 60  SLAAAIALLLLALPAFLLVLYTAAIAANELIKLTNQTLVQLVDSPITSQQLAQITDIERL 119

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            ++    L+  Q  ++ S               A  F  +     + +  MI   F+  R
Sbjct: 120 IQIELTQLTPDQIRRVFSS-----------LGSAGNFLSVIGVGLVHLFVMIALAFYLLR 168

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG-- 237
           D   +S+ + S          +     V     S F G  + A+  G +   AY +    
Sbjct: 169 DDHQLSRWVRSRFGDERGVL-ETYLDAVDNDFTSIFFGNILNAVITGTIGVLAYSILNIT 227

Query: 238 ------VPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGN-------IFNATCLFL 283
                 +P+   LG++  + ++IP  G  + +  V++YL +           F A+ + +
Sbjct: 228 APAGVAIPAAALLGLVAGVASLIPVVGMKLVYVPVAVYLAVTSYFTNPETLWFTASFVAV 287

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              I   I D  LRP++ G   +L           G    G  G+F+ P+++ L+ 
Sbjct: 288 SLIIVDTIPDLVLRPYVSGR--RLHVGAVMVAYTFGPLLFGWYGVFLAPIILVLVV 341


>gi|81428086|ref|YP_395085.1| putative transport protein [Lactobacillus sakei subsp. sakei 23K]
 gi|78609727|emb|CAI54773.1| Putative transport protein [Lactobacillus sakei subsp. sakei 23K]
          Length = 379

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/320 (13%), Positives = 110/320 (34%), Gaps = 6/320 (1%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P++ A ++ +   P+      +   +      +  + ++ L    +  +      +   L
Sbjct: 59  PIIIAAVLYYLINPLIDWLEHRWHLNRVLSITLIFIVIVALLAWGVATIIPIIQSQTTSL 118

Query: 93  V-SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           +                W +D P      +      +   S        + T+ +  I  
Sbjct: 119 IKQWPSYWANIQKQTMSWFND-PSFKSLQKQLDDINTDMLSNLSGKVNKMLTSTVTHIGT 177

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                  +  +  ++I+ M   LFF  +DG  +   L             ++   +   +
Sbjct: 178 AVG----VVTNIVIAIVTMPFILFFMLKDGHRLKGYLVKFFPVRIRETTSQVLEEINGQV 233

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
                G   +A    ++    YW+ G+   + LG++  ++ +IP          S+ +  
Sbjct: 234 SQYIRGQLTVAFWVAVMFTIGYWIVGMKYGLTLGILAGLLNLIPYLGSFLALVPSVVIAA 293

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
             +      + L  A+E  +  + + P ++G  + +  + T   L+   +  GL+G+ +G
Sbjct: 294 FISPILLIKVLLVFAVEQTLEGRVVSPLVLGSKMSMYPVTTIIVLLASGKLFGLVGVIVG 353

Query: 332 PVLMALIAVIWKESIMAIKE 351
             + A+I ++        K+
Sbjct: 354 IPVYAIIKILVTHLFEWFKK 373


>gi|320532667|ref|ZP_08033462.1| hypothetical protein HMPREF9057_01338 [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320135113|gb|EFW27266.1| hypothetical protein HMPREF9057_01338 [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 486

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 56/343 (16%), Positives = 121/343 (35%), Gaps = 19/343 (5%)

Query: 10  GIMRWMIMFIILVSLYFLK------GFFAPVLSALIIGFTSWPIYSSFISKKEESS-TFL 62
           G+  W+ + I++     +         F  +  AL+      P+ + F         TFL
Sbjct: 135 GMGAWLGLGIVIAIGLVVYATSQVIPVFIGLFMALVFTSILQPMVNLFARIMPRYPATFL 194

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A++ T+  +   +    ++      +   L S+          +  +L + P  +   ++
Sbjct: 195 ALLTTIGAIAGLV---TYVVTSVTSQWSSLASQFGDGLNT---IMEFLENGPLHLTQQQI 248

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           + +     Q      + +L++N         S      +D    +   +    FF   G 
Sbjct: 249 YHQF----QLWLRQGQHYLQSNAPSLASELLSN-ASAVVDVLTVLALALFVTIFFLASGG 303

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + +   +           + +            G  ++A+ + ++ G    L G+P   
Sbjct: 304 RMWRWFLNELPATMRESTHRAAGAGWYTFAGYARGTVLVALTDAIMAGIFLQLVGIPLAA 363

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  I A IP  GAP++     +  L  G       + +  A    I    L+P ++
Sbjct: 364 PLAVLVFIGAFIPIIGAPLAMIVAMVVALASGGFVTMIVVGVGVAGIGQIEGHILQPLIM 423

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           G  + L  +    G+  G    GLLG  +   L++++  ++ E
Sbjct: 424 GRQVSLHPVVVIIGVALGTYAAGLLGAIVAVPLISVLWSVYSE 466


>gi|291276358|ref|YP_003516130.1| acid membrane antigen A [Helicobacter mustelae 12198]
 gi|290963552|emb|CBG39384.1| acid membrane antigen A [Helicobacter mustelae 12198]
          Length = 345

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 73/361 (20%), Positives = 142/361 (39%), Gaps = 33/361 (9%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
             +   I+  +   I L +LY  + F    L A +I   ++ +     +     S  LA 
Sbjct: 2   TNSKSLILIILFACITLSTLYLYRFFLVDALIAGLICIATFGLKERLYNIL--RSNLLAT 59

Query: 65  IAT-VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++  + +M  F++PL+FL    ++    L ++ +L                    + E  
Sbjct: 60  LSIEIFLMLFFVLPLVFLIQQSIMFFSALKAQDILYYFQS---------------SREGI 104

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIP----RFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            + LS+   +    +T L+      I       +S  G   L + + + F+++ LF F+ 
Sbjct: 105 KEILSNFPMITAHIQTLLQNLSAQKIAELSLSVSSYIGSESLHFFMDLGFILLFLFLFFY 164

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G SI   +      L       I   V  V++   L   +  I +GL  G         
Sbjct: 165 HGRSIYLGILRALP-LNIKQGHHIFEEVSSVLKIVLLTSLVNMILQGLAFGIFLSFFHYK 223

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLR 297
             + LG+   I +++P  G  + +  V+ + +  G+  +A  + L+  I + F++D  ++
Sbjct: 224 HALILGICYGIASLVPVVGGALVWIPVAGFEIFLGHFQHAIIISLYALIFIAFVIDNVIK 283

Query: 298 PF--------LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           P         L+  P+K+  L  FF +  G  T G  G+ +GP + A    +W+      
Sbjct: 284 PIIITFFNHKLLSKPLKINELIIFFAIFAGFSTFGFWGILLGPAITAFFIALWRLYQRRF 343

Query: 350 K 350
           K
Sbjct: 344 K 344


>gi|34558124|ref|NP_907939.1| membrane protein- permease [Wolinella succinogenes DSM 1740]
 gi|34483842|emb|CAE10839.1| MEMBRANE PROTEIN-Predicted permease [Wolinella succinogenes]
          Length = 345

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 128/359 (35%), Gaps = 24/359 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           + P      + +F +   LY  K F   +L A ++   +  +      + +     L+ +
Sbjct: 1   MRPIHFFWILFVFSLYWMLYLFKPFLMDMLVAGLLCIATTSLKERIEKRVK-----LSWL 55

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           A++ V+ L +  L    +Y    + + +SK+   +  G                 +    
Sbjct: 56  ASLLVVVLLLSLLFVPLFYVAAVLADTLSKIDPDSFRGFVESS-------KAQMFKWMAL 108

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                + L    +    +  +     ++   G   L +    +F+ I LF F+  G +  
Sbjct: 109 FPFAQEKLMENLDKINASAILQHALAWSGALGKKSLSFVTDTVFVTIFLFLFFYYGRAFY 168

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                L          ++   V  V+   F       I +G +        G  +    G
Sbjct: 169 DYALRLIP-FSRRESHQLFGEVAGVLGVVFYSSLASVILQGFLFAVMIAFLGY-NGFLFG 226

Query: 246 VITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVG- 302
           V+  + +++P  G  + +  ++ Y    GN  N+  + L+  I +  V D  ++P L+G 
Sbjct: 227 VLYGVASLVPVVGGLLVWLPLASYEYYLGNTGNSLLIALYSMIVIATVADNVIKPLLIGL 286

Query: 303 -------GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                   P+++  L  FF +  G+ T G  G+ +GP + A    + +         +E
Sbjct: 287 INRVILKNPVQINELVIFFAIFAGLTTFGFWGMVLGPTITAFFIALLRLYERGFLHIQE 345


>gi|325294630|ref|YP_004281144.1| hypothetical protein Dester_0431 [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065078|gb|ADY73085.1| protein of unknown function UPF0118 [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 346

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/336 (13%), Positives = 119/336 (35%), Gaps = 7/336 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +F+++  L+ +K    P      I + S+P+++ F    +  +   A++   S+  + I+
Sbjct: 14  IFLLIFFLFSMKTAIMPFFIGSAIAYLSYPLFNLFRKLTKNRTNISAILTLFSIFLVLII 73

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L  +    + +++  +  +    +              G    +      S  Q+L   
Sbjct: 74  VLFIVLPTVISQVQSFIKFLPELTKKLDAFTYKF----VGEHLLKKLHFDTSTLQTLVRS 129

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           +   L +  +  I +             ++++ + +  ++F  +   I      +     
Sbjct: 130 AYIQLGSLPVRDIVQRFFSGVFSVFTLFINVVIVPLITYYFLVNAGKIRDIYLKITPVSI 189

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               K +   V + + S  +G   +A   G  +    +  G+     +G +  ++ MIP 
Sbjct: 190 RDELKSLLEKVHESLSSYLIGQIAVATFVGFYIALGLYFVGIKYSFLIGFVAGVLNMIPY 249

Query: 257 GAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
               S    SI L I   G +     + +    E+  ++  + P ++     +  L    
Sbjct: 250 VGFFSGLIPSILLAIFDNGQLTYVIGVLIVFLTEVG-IENLIYPVVMSKTTGINPLLILL 308

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            +  G    G LG+ I   +  +I  I++  +   +
Sbjct: 309 SIFIGGYYGGFLGIIISVPIAVMIVPIFESFLEKRE 344


>gi|284033514|ref|YP_003383445.1| hypothetical protein Kfla_5640 [Kribbella flavida DSM 17836]
 gi|283812807|gb|ADB34646.1| protein of unknown function UPF0118 [Kribbella flavida DSM 17836]
          Length = 470

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/326 (14%), Positives = 105/326 (32%), Gaps = 16/326 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + ++  +L +L     PV   +++     P+ +     +       A    +  + +   
Sbjct: 126 VLVLAYALRYLSEVVVPVTIGVLLTALLVPVTNGLQKIRVPR-GPAAGGTVLLTLVVVAG 184

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L  +      + + L ++V    +    + R                 ++S       L
Sbjct: 185 LLTLVGAQIATQFENLSTQVGEGVRELRDMAR--------------INLNVSDADITDAL 230

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           +           I + A+  G         +   +  LFFF   G  I   L  L     
Sbjct: 231 NRLRDTVMSGGAIGQRAAEVGTTATHVVAGLFISLFCLFFFLYQGEQIWAWLVRLFPRQA 290

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                   R     + +      I+A  + + +     + G+P   A+G++  + A +P 
Sbjct: 291 REKADSSGRKAWVSLTAFVRATIIVAAVDAIGIALGAAILGLPLVSAIGILVFVGAFVPV 350

Query: 257 GAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              +    V++ + L+      A  +         +    L+PFL+G  + +  L     
Sbjct: 351 VGALVSGCVAVLVALVAKGPIVAVIMLAVVIGVQQLEAHVLQPFLLGRAVSVHPLAVILA 410

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           +  GV   G++G  +     A+I  I
Sbjct: 411 IATGVVIAGIVGALVAVPTAAVINTI 436


>gi|296108736|ref|YP_003615685.1| protein of unknown function UPF0118 [Methanocaldococcus infernus
           ME]
 gi|295433550|gb|ADG12721.1| protein of unknown function UPF0118 [Methanocaldococcus infernus
           ME]
          Length = 326

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 64/332 (19%), Positives = 134/332 (40%), Gaps = 25/332 (7%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           ++  I+ ++L  +Y +  +      A+   + + PIY            F + +++   +
Sbjct: 10  IKLFILGLMLFFVYMIIPYLDVFAYAIAFSYMALPIYKFL------RKFFSSSVSSFLAI 63

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            LFIVPL+ +F Y +  + +L+  +               DI   +     +  +L +  
Sbjct: 64  ALFIVPLILIFIYSISVLIKLILSL---------------DINYYINLLLKYNINLEYLS 108

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            L      ++ T     I     +  +   D  L +I ++   ++F +DG  I   +  +
Sbjct: 109 KLLPEYFKYINTYLSSLISSIPEKI-LYLSDLALKLIMVVFCTYYFLKDGEKIKDVILKI 167

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +    + + + + ++ +S F+    +++  G +    Y+L  +P    L V+TAI 
Sbjct: 168 TPTEYEYKVEILLKYLHEIYKSLFISCLFLSVIIGFLAFIIYYLFSIPYPELLAVLTAIF 227

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           A +P  GA I +   S+Y+ +   I     L L       I D  LRP +V     +  +
Sbjct: 228 AFLPIIGAWIIYLPASLYIALANPIKGLFFLILCIVFLNIIPDYILRPHIVS--TDIHPI 285

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                 +    T+GL G  IGP+++  +   +
Sbjct: 286 LVVIAFLIAPLTLGLAGFAIGPLIVGFLNAFY 317


>gi|116495246|ref|YP_806980.1| permease [Lactobacillus casei ATCC 334]
 gi|116105396|gb|ABJ70538.1| Predicted permease [Lactobacillus casei ATCC 334]
          Length = 392

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 56/329 (17%), Positives = 114/329 (34%), Gaps = 17/329 (5%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           F+      F      P+LSA  + +   PI    + K   S     ++  + V+   ++ 
Sbjct: 32  FLFAPVATFFSTLLIPILSAGFLFYLFNPI-VKLLQKFHISRNISILLIFLVVIGALVLV 90

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS--DIPGGMWASELWTKHLSHP---QS 132
            + +    + ++ + V+ +          P +L    +     +   W + L+      S
Sbjct: 91  FMAVLPNLIYQVTQFVTNI----------PDFLKGVRLFISKASHYTWYQRLNIGKYVAS 140

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           L+I     L      F     +  G +     +SII + + LF+F +DG +    +  + 
Sbjct: 141 LQISPSKVLSKVLGGFSTGLPTVIGSVA-SMMISIITIPVMLFYFLKDGENFVPSIQKML 199

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            H +      +   +   +     G  I  +  G      Y + G+P    LG I  I+ 
Sbjct: 200 PHRYHEEVATVFTRLNSTLSHYIGGQAIECLFVGTFTFIGYLIIGMPYAYLLGFIAGIVT 259

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +IP   P    A ++ +           + +   I        + P ++G  + +  L  
Sbjct: 260 IIPYLGPYIGIAPALAIAATEGWTKMLLVVVVVVIIQMTDGNFIYPNVIGRSLDIHPLTI 319

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
              L+      GLLG  +     A+I  +
Sbjct: 320 IILLMVAGNLWGLLGTILAVPTYAVIKTV 348


>gi|229012172|ref|ZP_04169351.1| hypothetical protein bmyco0001_26180 [Bacillus mycoides DSM 2048]
 gi|228749260|gb|EEL99106.1| hypothetical protein bmyco0001_26180 [Bacillus mycoides DSM 2048]
          Length = 348

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 54/330 (16%), Positives = 128/330 (38%), Gaps = 5/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P+L AL + F   P+     +KK        ++  + ++ L  V +  +    
Sbjct: 22  FISTLFFPILIALFLYFIFNPLLVFLENKKVPR-GLAILLLYLFIITLTGVAIGVVVPTI 80

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +LV  +    + G     ++ D+        L T++    ++++  +  +LK   
Sbjct: 81  SQQLMDLVKNMPTYIKEG---KVYIQDLSHHRLFEWLSTQNYVSIETIEKNAIEYLKEIP 137

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
                   + FG+I  +  L I  +   LF+ ++DG +   +  S+    +     +I +
Sbjct: 138 NTLTSSATALFGIIT-NVALVIFTVPFILFYMFKDGHAFPGKAVSVLPESYREEGLRIIK 196

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              + + +   G  ++ +  G    + Y + G+P    LG+I A   +IP   P    A 
Sbjct: 197 ETNETLSAYIQGQALVCMFIGAFTFTGYLIIGLPYAFVLGIIAAFTNIIPNLGPFIGAAP 256

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A  + +   I        + P ++   + +  L     ++G     G+
Sbjct: 257 AVIIGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIILILGVGNFAGI 316

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G+ +     A+   +    +   K  + K
Sbjct: 317 IGMILAVPAYAVTKTVVSNLVRLFKTKRSK 346


>gi|314939808|ref|ZP_07847028.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
 gi|314943896|ref|ZP_07850622.1| conserved hypothetical protein [Enterococcus faecium TX0133C]
 gi|314949993|ref|ZP_07853286.1| conserved hypothetical protein [Enterococcus faecium TX0082]
 gi|314953515|ref|ZP_07856427.1| conserved hypothetical protein [Enterococcus faecium TX0133A]
 gi|314994283|ref|ZP_07859585.1| conserved hypothetical protein [Enterococcus faecium TX0133B]
 gi|314995151|ref|ZP_07860267.1| conserved hypothetical protein [Enterococcus faecium TX0133a01]
 gi|313590642|gb|EFR69487.1| conserved hypothetical protein [Enterococcus faecium TX0133a01]
 gi|313591318|gb|EFR70163.1| conserved hypothetical protein [Enterococcus faecium TX0133B]
 gi|313594438|gb|EFR73283.1| conserved hypothetical protein [Enterococcus faecium TX0133A]
 gi|313597437|gb|EFR76282.1| conserved hypothetical protein [Enterococcus faecium TX0133C]
 gi|313640948|gb|EFS05528.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
 gi|313643640|gb|EFS08220.1| conserved hypothetical protein [Enterococcus faecium TX0082]
          Length = 362

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 57/334 (17%), Positives = 115/334 (34%), Gaps = 7/334 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F    FAPVL A  + +   PI    + K +    +   I  + ++   I  LL +    
Sbjct: 30  FFSTLFAPVLIAGFLYYLLNPI-VKLLMKAKIKRIWAVAIVLLLLVAAIIWILLSVIPSL 88

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  L S +    +      + ++++P            ++       +S   +    
Sbjct: 89  VQQISSLASNMPDFIKQVESWLKEVAELPLFKEVD------INKYFEQLDISYGTIIQQF 142

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +               + II     LF+  +DG  +   +             ++  
Sbjct: 143 LSGVSNSLGSIVGTIASATVVIITAPFILFYMLKDGEKLVPNIQQFFPEKRRNQIVELLG 202

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K + +   G  I  +  G      Y + GV      GVI  +  +IP   P    A 
Sbjct: 203 QLNKTLANYISGQAIECLFVGTFTFLGYMVIGVDYAFLFGVIAGLTNLIPYLGPYLGLAP 262

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +  + +  +   A    +   I   +    + P ++G  +K+  L     L+      GL
Sbjct: 263 AFLVTVFNDPVKALLCCVVVLIVQQLDGNIIYPNVIGKSLKIHPLTIIIVLLVAGNIAGL 322

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           LG+F+G    A+   I    I  +KE+K+  +  
Sbjct: 323 LGIFLGVPFYAICKTIISYIIKIVKEDKQNENKK 356


>gi|191638756|ref|YP_001987922.1| UPF0118 membrane protein yueF [Lactobacillus casei BL23]
 gi|301066810|ref|YP_003788833.1| putative permease [Lactobacillus casei str. Zhang]
 gi|190713058|emb|CAQ67064.1| UPF0118 membrane protein yueF [Lactobacillus casei BL23]
 gi|300439217|gb|ADK18983.1| Predicted permease [Lactobacillus casei str. Zhang]
 gi|327382798|gb|AEA54274.1| YueF [Lactobacillus casei LC2W]
 gi|327385985|gb|AEA57459.1| YueF [Lactobacillus casei BD-II]
          Length = 392

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 56/324 (17%), Positives = 113/324 (34%), Gaps = 7/324 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           F+      F      P+LSA  + +   PI    + K   S     ++  + V+   ++ 
Sbjct: 32  FLFAPVATFFSTLLIPILSAGFLFYLFNPI-VKLLQKFHISRNISILLIFLVVIGALVLV 90

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
            + +    + ++ + V+ +    +    V  ++S      W   L      +  SL+I  
Sbjct: 91  FMAVLPNLIYQVTQFVTNIPDFLKG---VRSFISKASHYTWYQRL--NIGKYVASLQISP 145

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              L      F     +  G +     +SII + + LF+F +DG +    +  +  H + 
Sbjct: 146 SKVLSKVLGGFSTGLPTVIGSVA-SMMISIITIPVMLFYFLKDGENFVPSIQKMLPHRYH 204

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   +   +     G  I  +  G      Y + G+P    LG I  I+ +IP  
Sbjct: 205 EEVATVFTRLNSTLSHYIGGQAIECLFVGTFTFIGYLIIGMPYAYLLGFIAGIVTIIPYL 264

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P    A ++ +           + +   I        + P ++G  + +  L     L+
Sbjct: 265 GPYIGIAPALAIAATEGWTKMLLVVVVVVIIQMTDGNFIYPNVIGRSLDIHPLTIIILLM 324

Query: 318 GGVRTMGLLGLFIGPVLMALIAVI 341
                 GLLG  +     A+I  +
Sbjct: 325 VAGNLWGLLGTILAVPTYAVIKTV 348


>gi|172040204|ref|YP_001799918.1| hypothetical protein cur_0524 [Corynebacterium urealyticum DSM
           7109]
 gi|171851508|emb|CAQ04484.1| hypothetical protein cu0524 [Corynebacterium urealyticum DSM 7109]
          Length = 421

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 57/314 (18%), Positives = 115/314 (36%), Gaps = 13/314 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
            AP+  A++      P+ +    K     +  +++  + ++ L    +       +  + 
Sbjct: 54  VAPLAIAVLFSAMLTPVVNFLDVKLRLPRSLASLLTVLGLIGLISAGITLFTTQLISGVP 113

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            +      A Q    +  WL + P  +  ++L         +L   S+T         I 
Sbjct: 114 AMRD---SARQGVNQIVDWLENGPFKLTQAKLSEMVSHVQGALSENSKT---------IA 161

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
             A R G   ++   +++  +I LFFF  +G  I   L SL          +  R     
Sbjct: 162 DGAVRTGTTAVNSGAALLIFLITLFFFLYEGRRIWLWLVSLAPQASQVPMDEAFRRGWVS 221

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV-SIYL 269
           + +      ++A    + +G   W+  VP  + + V+  I + +P    +   AV ++  
Sbjct: 222 LGTFAHVQVLVAALNAVSVGIGCWVMKVPFAIPISVLVFIASFVPIVGALISGAVPALIG 281

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           L+   +F A  + +       I    L+PFL+G  + L  L     +  G    GL G  
Sbjct: 282 LVDQGVFTAIVMVIIVTAVHQIETHVLQPFLMGHAVALHPLAVIVVVAAGTYLFGLAGAV 341

Query: 330 IGPVLMALIAVIWK 343
               + AL+  + +
Sbjct: 342 FAVPVAALVNSVVR 355


>gi|312138760|ref|YP_004006096.1| integral membrane protein [Rhodococcus equi 103S]
 gi|311888099|emb|CBH47411.1| putative integral membrane protein [Rhodococcus equi 103S]
          Length = 413

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/321 (16%), Positives = 113/321 (35%), Gaps = 17/321 (5%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +  +++  IL  L+ +     PV+ A+++    WP   +   +        A I  +  
Sbjct: 40  AIGALVVGWILQKLWVIA---LPVMLAIVVSTVLWPPTRALTKR-GVPPAGAASITLLIF 95

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             LF   +  +    + +  EL +K     Q    V  WL   P  +   ++ T   +  
Sbjct: 96  FALFGGVVALIVPSVVDQAPELANKATQGIQ---QVQDWLKGPPVNLQDDQIDTAVHAIT 152

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
             L+              I               +++  ++I  FFF +DG      L  
Sbjct: 153 SKLQESGTA---------IASGVFTGVTTAGSMVVTLFLVLILAFFFVKDGPRFIPWLHG 203

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +       + +++   +   +        ++++ + + +G+   + GVP    L ++T I
Sbjct: 204 VSGGRAGRHLEEVLGRMWDTLGGFIRTQALVSLIDAVFIGAGLLILGVPLAPVLAILTFI 263

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
              +P  GA ++     +  L+   +  A  +         I    L+P L    +KL  
Sbjct: 264 GGFVPIVGAFVAGALAVLVALVANGLTTALIVLAIIIAVQQIEGNVLQPVLQSKSMKLHA 323

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +     +  G    G++G F+
Sbjct: 324 VVVLLAVTAGSSLFGIVGAFL 344


>gi|326773454|ref|ZP_08232737.1| permease [Actinomyces viscosus C505]
 gi|326636684|gb|EGE37587.1| permease [Actinomyces viscosus C505]
          Length = 485

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 53/318 (16%), Positives = 112/318 (35%), Gaps = 13/318 (4%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESS-TFLAVIATVSVMCLFIVPLLFLFYYGML 87
             F  +  AL+      P+ + F         TFLA++ T+  +   +    ++      
Sbjct: 159 PVFIGLFMALVFTSILQPMVNLFAKIMPRYPATFLALLTTIGAIAGLV---TYVVTSVTS 215

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           +   L S+          +  +L + P  +   +++ +     Q      + +L++N   
Sbjct: 216 QWSSLASQFGDGLNT---IMDFLENGPLHLTQQQIYHQL----QLWLRQGQHYLQSNAPS 268

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
                 S      +D    +   +    FF   G  + +   +           + +   
Sbjct: 269 LASELLSN-ASAVIDVLTVLALALFVTIFFLASGGRMWRWFLNELPATMRESTHRAAGAG 327

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVS 266
                    G  ++A+ + ++ G    L G+P    L V+  I A IP  GAP++     
Sbjct: 328 WYTFAGYARGTVLVALTDAIMAGIFLQLVGIPLAAPLAVLVFIGAFIPIIGAPLAMLVAM 387

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           +  L  G       + +  A    I    L+P ++G  + L  +    G+  G    GLL
Sbjct: 388 VVALASGGFVTMIVVGVGVAGIGQIEGHILQPLIMGRQVSLHPVVVIIGVALGTYAAGLL 447

Query: 327 GLFIGPVLMALIAVIWKE 344
           G  +   L++++  ++ E
Sbjct: 448 GAIVAVPLISVLWSVYSE 465


>gi|219851885|ref|YP_002466317.1| protein of unknown function UPF0118 [Methanosphaerula palustris
           E1-9c]
 gi|219546144|gb|ACL16594.1| protein of unknown function UPF0118 [Methanosphaerula palustris
           E1-9c]
          Length = 345

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 138/354 (38%), Gaps = 22/354 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M  T++  +  +  +I  I LV+++        ++ A+ +     P+      +     +
Sbjct: 4   MEITLITEEQKLWLLISAIFLVAVFAFWPLMTVIVWAVALAVAFMPLQKRLSRRL--KPS 61

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A + T+ ++C  I+ +       +    E+ S               ++ +  G+  +
Sbjct: 62  ISAALITIMILCTVILVVSVSMNVLLANSGEIGSM--------------ITSLVMGIQNA 107

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            + +   S   S        L  + ++ I    S    + +   +  + + + L+F    
Sbjct: 108 GISSFLPSSIASQLSSIPQMLIKSMLESIIGMTSNLLQLLIQVVIFFLSLSMLLYF---- 163

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G SI   L         +  +K++RI    I S  +     AI   ++    + + G  +
Sbjct: 164 GESIWGTLTCNLSPKLASAVEKMARISGDTIYSLIIIQISAAILSFILAIPFFMVLGYGN 223

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNI-FNATCLFLWGAIELFIVDKTLRP 298
            +    I  +  +IP  GA      +++YL+  G++   A  +F+   +    +D   RP
Sbjct: 224 VILFATIIGLGMLIPLIGAQFIILLMTLYLIATGDMKGAAITVFIGYPLLSGWIDFYYRP 283

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            ++G  + +  +    G+  G+  MG+LG  +GPVL+AL+   +K     ++  
Sbjct: 284 VMMGKRVAINPVLMMIGIFAGLPFMGILGFIVGPVLVALVVTGYKILEEEMRNP 337


>gi|148508155|gb|ABQ75947.1| predicted transporter [uncultured haloarchaeon]
          Length = 417

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 131/356 (36%), Gaps = 32/356 (8%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSL-YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M    ++   +  W+I F +  +L + +  F   ++  L   + + P+Y     +     
Sbjct: 1   MSSRTIDRTQLAWWVIGFALAGALIFVVYSFIGTIVFGLFFYYATRPLYQRINRQIGP-P 59

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
           +  A IA + +     + +L+       E+ +L ++ ++         + L+ I      
Sbjct: 60  SLAAAIALLLLALPAFLLVLYTAAIAANELIKLTNQTLVQLVDSPITSQQLAQITDIERL 119

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            ++    L+  Q  ++ S               A  F  +     + +  MI   F+  R
Sbjct: 120 IQIELTQLTPDQIRRVFSS-----------LGSAGNFLSVIGVGLVHLFVMIALAFYLLR 168

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG-- 237
           D   +S+ + S          +     V     S F G  + A+  G +   AY +    
Sbjct: 169 DDHQLSRWVRSRFGDERGVL-ETYLDAVDNDFTSIFFGNILNAVITGTIGVLAYSILNIT 227

Query: 238 ------VPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGN-------IFNATCLFL 283
                 +P+   LG++  + ++IP  G  + +  V++YL +           F A+ + +
Sbjct: 228 APAGVAIPAAALLGLVAGVASLIPVVGMKLVYVPVAVYLAVTSYFTNPETLWFTASFVAV 287

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              I   I D  LRP++ G   +L           G    G  G+F+ P+++ L+ 
Sbjct: 288 SLIIVDTIPDLVLRPYVSGR--RLHVGAVMVAYTFGPLLFGWYGVFLAPIILVLVV 341


>gi|253575325|ref|ZP_04852663.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251845322|gb|EES73332.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 397

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/332 (14%), Positives = 111/332 (33%), Gaps = 11/332 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
             K    P+L    I +   P+     +K+        V     +  L    L  L    
Sbjct: 50  LFKTVLLPILLTGAIYYLLNPLVDWLETKRIRR-----VYTITGLYLLIAGILTVLIMTV 104

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +  ++   ++++   ++       +      +  S  + +               L   G
Sbjct: 105 IPLVQ---AQILSLIENLPRYTSEVQRQFESLIGSNFFHQVQESTGFNLDDLSNTLSERG 161

Query: 146 IDFIPRFASRFGMIFL---DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              +    S  G       +  L+II M   LF+  +DG  + + +       F      
Sbjct: 162 TALLNNAWSGIGGFLGAVKNVVLAIITMPFILFYLLKDGKKLPEFILRYVPVRFREQTHH 221

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   +   I S   G  I++   G ++   + + G+   + L +I +  +++P   P   
Sbjct: 222 VMTEMNSQISSYIRGQIIVSFCIGALMYVGFVIIGLDYSLTLAIIASFTSVVPYLGPAIA 281

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +I + I  +      L +   +   +  K + P ++G  +++  +   F ++     
Sbjct: 282 ITPAIIVAIVTSPIMLLKLIVVWTVVQLVEGKFISPQIMGKTLRIHPITIIFVILTAGNL 341

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            G+LG+ +     A++ VI+       +    
Sbjct: 342 FGVLGVILAVPGYAVLKVIFTHLFQWFERRSH 373


>gi|229060593|ref|ZP_04197952.1| hypothetical protein bcere0026_26890 [Bacillus cereus AH603]
 gi|229167645|ref|ZP_04295381.1| hypothetical protein bcere0007_26070 [Bacillus cereus AH621]
 gi|228615807|gb|EEK72896.1| hypothetical protein bcere0007_26070 [Bacillus cereus AH621]
 gi|228718705|gb|EEL70331.1| hypothetical protein bcere0026_26890 [Bacillus cereus AH603]
          Length = 348

 Score =   99 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 54/330 (16%), Positives = 128/330 (38%), Gaps = 5/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P+L AL + F   P+     +KK        ++  + ++ L  V +  +    
Sbjct: 22  FISTLFFPILIALFLYFIFNPVLVFLENKKVPR-GLAILLLYLFIITLTGVAIGVVVPTI 80

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +LV  +    + G     ++ D+        L T++    ++++  +  +LK   
Sbjct: 81  SQQLMDLVKNMPTYIKEG---KVYIQDLSHHRLFEWLSTQNYVSIETIEKNAIEYLKEIP 137

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
                   + FG+I  +  L I  +   LF+ ++DG +   +  S+    +     +I +
Sbjct: 138 NTLTSSATALFGIIT-NVALVIFTVPFILFYMFKDGHAFPGKAVSVLPESYREEGLRIIK 196

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              + + +   G  ++ +  G    + Y + G+P    LG+I A   +IP   P    A 
Sbjct: 197 ETNETLSAYIQGQALVCMFIGAFTFTGYLIIGLPYAFVLGIIAAFTNIIPNLGPFIGAAP 256

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A  + +   I        + P ++   + +  L     ++G     G+
Sbjct: 257 AVIIGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIILILGVGNFAGI 316

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G+ +     A+   +    +   K  + K
Sbjct: 317 IGMILAVPAYAVTKTVVSNLVRLFKTKRSK 346


>gi|294497307|ref|YP_003561007.1| hypothetical protein BMQ_0516 [Bacillus megaterium QM B1551]
 gi|294347244|gb|ADE67573.1| Conserved Hypothetical Protein [Bacillus megaterium QM B1551]
          Length = 380

 Score =   99 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 55/327 (16%), Positives = 126/327 (38%), Gaps = 7/327 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI++    F+K    P++ A I  +   P+      K  +      +I+ + +  + I
Sbjct: 40  IGFILIPISIFIKTIALPIILAGICFYLFNPLVDFLERKGVKR-----IISILVLYIVII 94

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGI-PVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
             L  +    +  +K  V +++         V   ++++    +  +      +    L 
Sbjct: 95  GALAIIISSVIPPLKNQVDRLIDNIPELTHDVQHAVTNLSNNRYVEQGLQSANTDLDKLS 154

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
             +   L      F     +  G I  +  LS+  +   LF+  +DG ++   +  L  +
Sbjct: 155 KDASKHLSKYVSGFSSGIVNFVGTIT-EIILSVAVLPFILFYLLKDGKNLPNYIVKLLPN 213

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
              +  K I   +   + +   G   +AI  G++L   Y + G+   + L +I  +  ++
Sbjct: 214 RSRSEAKFILADMNHALSAYIRGQIFVAICIGVLLFIGYLIIGLDYALLLAIIAMVTNVV 273

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P   PI     +I +    + F    L +  A+   +  K + P ++G  + +  +   F
Sbjct: 274 PYLGPIIAIIPAIIIAFITSPFMLVKLAIVWAVVQLLEGKVISPQIMGRSLDIHPITVIF 333

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVI 341
            ++      G++G+ +     A++ VI
Sbjct: 334 VILTAGNLFGIIGIILAVPGYAVLKVI 360


>gi|295395792|ref|ZP_06805980.1| integral membrane protein [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971327|gb|EFG47214.1| integral membrane protein [Brevibacterium mcbrellneri ATCC 49030]
          Length = 465

 Score =   99 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 100/292 (34%), Gaps = 9/292 (3%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
           F+ + +   T   +   +  + + +  L F     ++    L  +VVL       +  ++
Sbjct: 119 FLDRHKWPHTLSVITTFLGFILVVLGLLAFTGQQIVVGFPALAHQVVLGVNK---LNAFV 175

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
            + P G+ ++ + +             +          I   A        ++   ++  
Sbjct: 176 QNNPFGIDSTVITSYLDELSGKALDWLQK-----SQGKIASGALGAASSIGNFVTGLLIT 230

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           + A FFF  DG  I Q    L            +      +        ++A  + + +G
Sbjct: 231 LFASFFFLYDGGRIFQWFVRLLPKPAQPKSVAAAVNGWSTLVQYVRVQVLVAGIDAVGIG 290

Query: 231 SAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
              +  G+P    L V+  + + IP  GA ++     +  L+   +  A  + +      
Sbjct: 291 IGAFALGIPLAFPLTVLVFLASFIPLVGAVLTGVIAVLVALVSKGLVTAIIMLIVVVGVQ 350

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            +    L+PFL+G  + +  L     + GG    G+ G       +A++  +
Sbjct: 351 QLEGNVLQPFLMGKAVAVHPLAVVLAVTGGGVLYGIPGALFAVPFVAMLNTV 402


>gi|163756542|ref|ZP_02163654.1| permease [Kordia algicida OT-1]
 gi|161323436|gb|EDP94773.1| permease [Kordia algicida OT-1]
          Length = 381

 Score =   99 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 56/346 (16%), Positives = 123/346 (35%), Gaps = 6/346 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M          +    +  ++  LY LK    P+L A+I+G   +P+   F  K   S  
Sbjct: 1   MTIQTKTTSRAVGLFTVIAVVFVLYVLKPLVMPLLFAMILGVMIFPVQQFFEKKWRCSRM 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           F  + +   +  + ++ L  +F+            V   ++       +L D      + 
Sbjct: 61  FATIFSIFLIFSVTVILLFIIFFQLQEFTNGSEDYVGRISELYENTVAYLGDAFNMSNSK 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +     +   S    +   L     D I    +R G     +   ++ + I LFFF   
Sbjct: 121 TVEGVDNTESSSGVDFNLNNLLKGNFDKITSLLTRSG----SFMSDLVLVPIYLFFFLYY 176

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +      L +H   ++  K+   +  V ++   G+  + +  G++        G+ +
Sbjct: 177 RRFLRTFAYKLFKHKSQSFVNKMINKIYNVQQNYLAGLLKVMLIVGVLNTITLLALGIEN 236

Query: 241 HVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            +  G   AI+ +IP    I        + L+ K +I+ A  +  +     F+    + P
Sbjct: 237 AIFFGFFAAILLLIPYIGVIIGALLPAMVALVTKDSIWYAFGVIGFFGFIQFLEGNFITP 296

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            + G  + +        L+      G+ G+ +   ++A + +I+  
Sbjct: 297 KITGSKVNMNSFVAILSLIAFAMLWGISGMIVALPIIASLKIIFDH 342


>gi|145295169|ref|YP_001137990.1| hypothetical protein cgR_1111 [Corynebacterium glutamicum R]
 gi|140845089|dbj|BAF54088.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 490

 Score =   99 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 52/339 (15%), Positives = 113/339 (33%), Gaps = 19/339 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFF---APVLSALIIG-FTSWPIYSSFISKKEESSTFLAVI 65
            +    +   + +  + +  F+    PV  A+II    S P  +S++ K    S   A I
Sbjct: 64  SLRLVFVAAAVFILWWVIGRFWQGVLPVTLAIIICTVLSSP--NSWLRKHGVPSVLSAFI 121

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
              +   +    L  +      + + L  +        + +  WL   P  + + +L   
Sbjct: 122 TIGTFFAITGAILWVIAPSIAQQSQVLYFQAFEGI---LSIQLWLQGPPLNLDSGDLSRY 178

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                  L+  +               +    +  +             FFF +DG    
Sbjct: 179 FNEAAAWLQNQAGAIAGEIFSGLGAATSVLVTLGVVLVLT---------FFFLKDGHRFL 229

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                +G      +  ++       +        +++  + + +G    + GVP  +AL 
Sbjct: 230 PWARKIGGEQAGWHVTELLTRAWTTLSGFVRAQALVSAVDAVFIGIGLLIVGVPMALALS 289

Query: 246 VITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           VIT +   IP     +  A+++ + L+      A  + +       +    L P L    
Sbjct: 290 VITFVAGFIPIIGAFTAGALAVLVALVSLGFTEAVIVLVIVVAVQQLEGNILSPLLQSKA 349

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           + L  +     +  G    G++G F+   + A+IAV ++
Sbjct: 350 MNLHPVIVLLSVTVGGTLFGIVGAFLAVPVAAMIAVFFR 388


>gi|229823123|ref|ZP_04449192.1| hypothetical protein GCWU000282_00420 [Catonella morbi ATCC 51271]
 gi|229787289|gb|EEP23403.1| hypothetical protein GCWU000282_00420 [Catonella morbi ATCC 51271]
          Length = 401

 Score =   99 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 52/328 (15%), Positives = 126/328 (38%), Gaps = 20/328 (6%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P++++ ++ +  +P+     ++       +  I    ++        +     +  ++  
Sbjct: 59  PIITSGVLYYLLYPLVDRLQARGMNRQWAIWAIFIGLILL-----SAWGIASLVPTLQTQ 113

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
           +     +      +P++  +I   ++ S   T++    Q L+   + F   +  + + RF
Sbjct: 114 ILSFARS------LPKYYDEIYHMLYQSPFLTENKEVTQRLQSFLDGFDFRSMAEQLSRF 167

Query: 153 ASR-------FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           AS                 + ++ + I L++   DG  +   +         A   ++  
Sbjct: 168 ASSTFGSLGSVVGAVTSVIMGLLTVPIILYYLLADGQRLGDYILKFVPTKHRAMASRMMY 227

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTA 264
                +     G  I+AI   ++    Y + G+   +ALGV++  + +IP  G+ I+   
Sbjct: 228 QGHYQVAQYIRGQIIVAICVAIMFSIGYSIVGLDYAIALGVVSGFLNIIPFLGSFIAVIP 287

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             I  LI  +      + +   +E  I  + + P ++G  +K+  +     L+   +  G
Sbjct: 288 AFIIALIT-SPVMVLKVAIVMMVEQTIEGRFIAPQVLGNNLKIHPVTILIVLLSAGKAFG 346

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+G+ +G    A+I VI  E     +E 
Sbjct: 347 LVGVILGVPGYAVIKVIVGEFYELYRER 374


>gi|257784261|ref|YP_003179478.1| hypothetical protein Apar_0456 [Atopobium parvulum DSM 20469]
 gi|257472768|gb|ACV50887.1| protein of unknown function UPF0118 [Atopobium parvulum DSM 20469]
          Length = 460

 Score =   99 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 54/333 (16%), Positives = 121/333 (36%), Gaps = 14/333 (4%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK--KEESSTFLAVIATVSVMCL 73
           +  + L  L  L      +    I+ F   P+ +    +      S F A+I T+ V   
Sbjct: 31  LFALALYVLGILGQAVELLAIGAIVAFVCSPVTNWLEDRGIPRGISAFAALILTLIVFVG 90

Query: 74  FIV----PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           F++    PL+      +       S++    +         S+         +  +  S 
Sbjct: 91  FLILIAQPLVLELTTLLKNAPSYASQIGAMAREFWQNFDSQSNPAVRQTVELVIERASSI 150

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S+     ++L T+ +  I   A++         +     ++  ++  +D   I ++L 
Sbjct: 151 GISVASGILSWLSTSALGNISSMANQ--------LMVFFLGLVLAYWLAKDYPVIVRELA 202

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +        ++ I  I+ +       G  I +   G+++     + G P    +G++T 
Sbjct: 203 IIAGPQKEDEFRLILAILSRSTSGYMRGTIITSAVNGILVYFGCLILGNPYAALIGMVTG 262

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I  +IP   P+    +++ L I  +        +   +   +VD  L P ++   +K+  
Sbjct: 263 IFHIIPVVGPVFSAGIALILSILVDPIMTVWTIVILMVAQNVVDNVLSPLVMATSVKVHP 322

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
             +  G+V G    G++G  +   L A +  I+
Sbjct: 323 GLSLIGIVIGSALGGVVGTILAIPLTAALRGIF 355


>gi|224438291|ref|ZP_03659218.1| hypothetical protein HcinC1_09901 [Helicobacter cinaedi CCUG 18818]
 gi|313144731|ref|ZP_07806924.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313129762|gb|EFR47379.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 355

 Score =   99 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 64/343 (18%), Positives = 137/343 (39%), Gaps = 25/343 (7%)

Query: 14  WMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           W++  +   S+Y     +   +L AL++   ++ +Y+S + + +      A ++   ++ 
Sbjct: 8   WLVFIVSAYSMYHIYAAYLMDILIALLLYIVTYGLYASLLKRVK-YPIVSATLSICVLIL 66

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           L +VPL FLF   +    EL      A   G                  L          
Sbjct: 67  LLVVPLFFLFKTIITSAAELNPTDFSAFVEG-----------SKEQILSLLVSFPEIEAK 115

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
            + +  +   ++ + ++  F+S+ G   L + +   F+I+ LFF++  G      +  L 
Sbjct: 116 ARDILSSISASSILGYVLNFSSQLGKSSLGFMVDTGFIIVFLFFYFLYGKQAYDYVIELI 175

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                     +   V  VI+  F    +  + +G+  G      G    V  G++    +
Sbjct: 176 P-FENIQISNVLDEVTNVIKVVFYTSLVNIVLQGVAFGILIMFFGYDG-VFFGMLYGFAS 233

Query: 253 MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLVG-------- 302
           ++P  G  + +  ++ Y    GN  NA  + L+  I    ++D  ++P L+G        
Sbjct: 234 IVPIVGGGLVWLPLAGYEFYLGNTQNAIIIALYALIVCAVLIDNVIKPILIGLINKKVLK 293

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             +++  L  FF ++ G+ ++G  G+ +GP + AL   + +  
Sbjct: 294 TSVRINELLIFFAILAGLTSIGFWGIILGPAITALFISLLRIY 336


>gi|32266134|ref|NP_860166.1| hypothetical protein HH0635 [Helicobacter hepaticus ATCC 51449]
 gi|32262184|gb|AAP77232.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 355

 Score =   99 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 59/322 (18%), Positives = 127/322 (39%), Gaps = 24/322 (7%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           +L AL++   ++ +++  +SK  +     A ++   ++ LFIVPL  L    +  + EL 
Sbjct: 29  ILIALLLCIATYGLHN-ILSKYIKYPVICAFVSVSVLVLLFIVPLFSLMKTLITSVSELN 87

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
                A   G                  L++        L+ +       + + ++  F+
Sbjct: 88  PTAFGAFIEG-----------SKAQILALFSSFPEIESRLRDVFNNISAPSILSYVFNFS 136

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
           S+ G   L + +   F+++ LFF++  G    + +  L           +   V  VI+ 
Sbjct: 137 SQLGKSSLGFIIDTGFIVVFLFFYFLYGKQAYEYIIELIP-FENIQIANVLDEVTNVIKV 195

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIK 272
            F    +  + +G   G      G    V  G++  + +++P  G  + +  ++ Y    
Sbjct: 196 VFYTSLLNIVLQGFAFGILIMFFGYDG-VFFGMLYGLASIVPIVGGGLVWLPLAGYEFYL 254

Query: 273 GNIFNATCLFLWGAIELF-IVDKTL--------RPFLVGGPIKLPFLPTFFGLVGGVRTM 323
           GN  NA  + L+  I    ++D  +           ++   +K+  L  FF ++ G+ + 
Sbjct: 255 GNTHNALIIALYALIVCAVLIDNIIKPILIGIINKKVLKTSVKINELLIFFAILAGLTSF 314

Query: 324 GLLGLFIGPVLMALIAVIWKES 345
           G  G+ +GP + AL   + +  
Sbjct: 315 GFWGIILGPAVTALFISLLRIY 336


>gi|229103517|ref|ZP_04234199.1| hypothetical protein bcere0019_26670 [Bacillus cereus Rock3-28]
 gi|229116426|ref|ZP_04245816.1| hypothetical protein bcere0017_27140 [Bacillus cereus Rock1-3]
 gi|228667258|gb|EEL22710.1| hypothetical protein bcere0017_27140 [Bacillus cereus Rock1-3]
 gi|228680013|gb|EEL34208.1| hypothetical protein bcere0019_26670 [Bacillus cereus Rock3-28]
          Length = 302

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/297 (14%), Positives = 112/297 (37%), Gaps = 4/297 (1%)

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                ++  + ++ L  V +  +      ++ +LV  +    + G     ++ D+     
Sbjct: 8   RNLAILLLYLFIITLTAVGVGVVVPTISQQLMDLVKNMPGYIKEG---KVYIQDLSHHRL 64

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
              L T++    ++++  +  +LK +  + I   A+    I  +  L I  +   LF+ +
Sbjct: 65  FEWLSTQNYVSIETIEKNAIEYLK-DIPNTITSSATALFGIITNVALVIFTVPFILFYMF 123

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +DG +   +  SL    +     +I +   + + +   G  ++ I  G      Y +  +
Sbjct: 124 KDGHAFPGKAVSLLPESYREEGLRIIKETNETLSAYIQGQALVCIFVGAFTFIGYLIIDL 183

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P    LG+I A   +IP   P    A ++ + +  +   A  + +   I        + P
Sbjct: 184 PYAFVLGIIAAFTNIIPNLGPFIGAAPAVIVGLFVSPMQALYVIIIVTIVQQFESNIISP 243

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            ++   + +  L     ++G     G++G+ +   + A+   +    +   K  +  
Sbjct: 244 RIMSSKLNIHPLTIIILILGVGNFAGIIGMILAVPVYAVTKTVVSNLVRLFKTKRNN 300


>gi|326801059|ref|YP_004318878.1| hypothetical protein Sph21_3671 [Sphingobacterium sp. 21]
 gi|326551823|gb|ADZ80208.1| protein of unknown function UPF0118 [Sphingobacterium sp. 21]
          Length = 438

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 46/326 (14%), Positives = 111/326 (34%), Gaps = 16/326 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           I+  LYFL+    P++ +++I  + +P+ + F+ +        A+++ +  + +    + 
Sbjct: 85  IIAVLYFLQSVLVPLMFSILIAISLYPV-TRFLERFNVHRALSAILSVILAILVIAGLIW 143

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
           F+ +  ++                  + +W++             K    P  L    + 
Sbjct: 144 FIVHQVIVIGHNGTDLQSKFLTIFNTIQQWIT------------VKFGVEPGELTAKVKE 191

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            L    +     + S            ++ + +  FF         +             
Sbjct: 192 -LSNRALSNAGTYLSAAFGSVGGILAGLVIVPLFSFFLLYYRDFFREFFFHAFRSTSQDK 250

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             +    +  V++S  LG+  +     ++      L GV      G + +++ ++P    
Sbjct: 251 VHETLNRIYSVVQSYLLGLITVMAIVAVLNTVGLLLMGVEYAWFFGTLASLLMLLPYIGI 310

Query: 260 IS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
                      L  K + + A  +  W  +  F+    + P +VG  + +  L     ++
Sbjct: 311 AIGSILPAVFALATKDSYWYAIGVVAWFQVVQFLEGNVITPNIVGSKVSINPLMAVIAIL 370

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWK 343
            G    GL GL +   L A+I V++ 
Sbjct: 371 LGGMLFGLAGLILALPLTAVIKVLFD 396


>gi|307823634|ref|ZP_07653863.1| protein of unknown function UPF0118 [Methylobacter tundripaludum
           SV96]
 gi|307735619|gb|EFO06467.1| protein of unknown function UPF0118 [Methylobacter tundripaludum
           SV96]
          Length = 351

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 56/340 (16%), Positives = 130/340 (38%), Gaps = 16/340 (4%)

Query: 13  RWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           +W++   I  S +    L     P   A ++ +   P+     + +           T +
Sbjct: 6   KWLVFAFISGSAWLVYLLAPVLMPFAFAAMLAYLGDPLTDKLETYQLSR--------TKA 57

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHL 127
           V+ +F V  L      +L +  L  +V     +      WL++  IP       L  + +
Sbjct: 58  VLVVFSVMTLVFVLVLLLLVPLLEYQVEHFVSNLPAYVAWLNETVIPWTQRRFHLGIRPV 117

Query: 128 SHPQSLKILSETFLKTNGIDF-IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +  Q + ++   + +  GI   +    S  G +  ++ ++++ + +  F+  RD   +  
Sbjct: 118 NLNQIINLVKSHWEQAGGIAATLMSSVSHSGGVIAEWLMNLLLIPVVTFYLLRDWDGLIA 177

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           ++  L          K++  V  V+ +   G   + +  G +     W+ G+   + +G+
Sbjct: 178 KVHDLLPRRVAPTATKLAGEVDTVLAAFVRGQFYVMLALGGIYSIGLWMTGLDVALLIGM 237

Query: 247 ITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           +  +++ +P    I     A    L+    +     + +   I   +    L P LVG  
Sbjct: 238 LAGLVSFVPYLGSIVGIVMACVAALVQFHELIQLVPVAIVFIIGQSLEGMVLTPMLVGDK 297

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           I L  +   F ++ G +  G LG+ +   + ++I V+ + 
Sbjct: 298 IGLHPVAVMFAVLAGGQLFGFLGILLALPVASVIMVLLRH 337


>gi|325676547|ref|ZP_08156225.1| integral membrane protein [Rhodococcus equi ATCC 33707]
 gi|325552725|gb|EGD22409.1| integral membrane protein [Rhodococcus equi ATCC 33707]
          Length = 413

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 52/321 (16%), Positives = 113/321 (35%), Gaps = 17/321 (5%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +  +++  IL  L+ +     PV+ A+++    WP   +   +        A I  +  
Sbjct: 40  AIGALVVGWILQKLWVIA---LPVMLAIVVSTVLWPPTRALTKR-GVPPAGAASITLLIF 95

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             LF   +  +    + +  EL +K     Q    V  WL   P  +   ++ T   +  
Sbjct: 96  FALFGGVVALIVPSVVDQAPELANKATQGIQ---QVQDWLKGPPVNLQDDQIDTAVHAIT 152

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
             L+              I               +++  ++I  FFF +DG      L  
Sbjct: 153 SKLQESGTA---------IASGVFTGVTTAGSMVVTLFLVLILAFFFVKDGPRFIPWLHG 203

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +       + +++   +   +        ++++ + + +G+   + GVP    L ++T I
Sbjct: 204 VSGGRAGRHLEEVLGRMWDTLGGFIRTQALVSLIDAVFIGAGLLILGVPLAPVLAILTFI 263

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
              +P  GA ++     +  L+   +  A  +         I    L+P L    +KL  
Sbjct: 264 GGFVPIVGAFVAGALAVLVALVANGLTTALIVLAIIIAVQQIEGNVLQPVLQSKSMKLHA 323

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +     +  G    G++G F+
Sbjct: 324 VVVLLAVTAGSSLFGIVGAFL 344


>gi|224476488|ref|YP_002634094.1| putative permease [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421095|emb|CAL27909.1| putative permease [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 408

 Score = 99.5 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 50/338 (14%), Positives = 121/338 (35%), Gaps = 9/338 (2%)

Query: 25  YFLKGFF-------APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           Y  + F        APV+  LI+ +   PI +     +      + ++  V+V  + ++ 
Sbjct: 48  YIFQPFVIIFNTIAAPVILGLILFYLFNPIINLMERYRIPRLWGIIILYCVAVAVIALI- 106

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +  L      ++K     V         +   ++ +  G   S  +++            
Sbjct: 107 VNLLIPVIGGQIKTFSHHVPRYVNKFNDIVDRVTSMSRGTGFSSFYSQIQDQLDKFAKKV 166

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              +      F       F    ++  + ++     LFFF +DG    +    +    F 
Sbjct: 167 PGMVSDYFDGF-GTKVMSFAEAVVNVGVVLVTTPFVLFFFLKDGHHFKETAIKVVPPKFR 225

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
             + ++   +   + S   G   +++  G++L   Y + G+   + L  I A+ +++P  
Sbjct: 226 QDFHEVIESMSLQVGSYIQGQMFVSLCIGVLLFIGYSIIGLDYSLVLACIAAVTSVVPYL 285

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P    + +I + +  +      L +   +  F     + P ++G  +K+  L   F L+
Sbjct: 286 GPTIAISPAIVMALITSPIMLLKLLIVWTLVQFFEGHFISPNVMGKTLKVHPLTIIFVLL 345

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                +G++G+ +     A++ V+        K    +
Sbjct: 346 CAGNLLGIVGVILAIPGYAVLKVLVMHLFDIFKRRYNR 383


>gi|229133792|ref|ZP_04262617.1| hypothetical protein bcere0014_27100 [Bacillus cereus BDRD-ST196]
 gi|228649651|gb|EEL05661.1| hypothetical protein bcere0014_27100 [Bacillus cereus BDRD-ST196]
          Length = 348

 Score = 99.5 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 54/330 (16%), Positives = 128/330 (38%), Gaps = 5/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P+L AL + F   P+     +KK        ++  + ++ L  V +  +    
Sbjct: 22  FISTLFFPILIALFLYFIFNPLLVFLENKKVPR-GLAILLLYLFIITLTGVAIGVVVPTI 80

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +LV  +    + G     ++ D+        L T++    ++++  +  +LK   
Sbjct: 81  SQQLMDLVKNMPTYIKEG---KIYIQDLSHHRLFEWLSTQNYVSIETIEKNAIEYLKG-I 136

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + I   A+    I  +  L I  +   LF+ ++DG +   +  S+    +     +I +
Sbjct: 137 PNTITSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPGKAVSVLPESYREEGLRIIK 196

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              + + +   G  ++ +  G    + Y + G+P    LG+I A   +IP   P    A 
Sbjct: 197 ETNETLSAYIQGQALVCMFIGAFTFTGYLIIGLPYAFVLGIIAAFTNIIPNLGPFIGAAP 256

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A  + +   I        + P ++   + +  L     ++G     G+
Sbjct: 257 AVIIGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIILILGVGNFAGI 316

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G+ +     A+   +    +   K  + K
Sbjct: 317 IGMILAVPAYAVTKTVVSNLVRLFKTKRSK 346


>gi|300361263|ref|ZP_07057440.1| permease [Lactobacillus gasseri JV-V03]
 gi|300353882|gb|EFJ69753.1| permease [Lactobacillus gasseri JV-V03]
          Length = 393

 Score = 99.5 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 108/320 (33%), Gaps = 12/320 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F      PVL A I  +   P+      K +       +I  + +  + +  L+++    
Sbjct: 52  FFNAILPPVLVASIQYYLMDPVVDWMEKKLKVPR----IITIILLFVIVLGGLIWIINTL 107

Query: 86  M----LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
           +     +   L+       Q        +   P          + +S  Q+    +    
Sbjct: 108 IPIIQHQTDSLIKNWPAYWQDAQKGFEKMIHDPRLNGVRSGINQVISDAQTKMFKT---- 163

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             +  +      S    +     + ++     LFF  +DG  ++  +           + 
Sbjct: 164 GQDSFNLALSNLSSAVNVITMIFMMLLTAPFVLFFMLKDGHRLNPYVTKFAPQKLQPSFS 223

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            +   +   + S   G   +A   G++    Y + G+   + L V+  ++ MIP      
Sbjct: 224 SLLSDINGAVASYIRGQITVAFWVGVMFAIGYSVIGLNYGITLAVLAGVLNMIPYFGTFI 283

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               +I L +  +      + +  AIE  +  + + P ++G  + +  + T   L+G   
Sbjct: 284 AFIPAIILGLISSPMMLVKVLIVFAIEQTLEGRVISPLVMGNKMNMNPVTTILLLIGASA 343

Query: 322 TMGLLGLFIGPVLMALIAVI 341
             GL G+     + A+I +I
Sbjct: 344 VAGLWGVIFAIPVYAVIKII 363


>gi|38233541|ref|NP_939308.1| hypothetical protein DIP0945 [Corynebacterium diphtheriae NCTC
           13129]
 gi|38199801|emb|CAE49464.1| Putative membrane protein [Corynebacterium diphtheriae]
          Length = 472

 Score = 99.5 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 59/338 (17%), Positives = 124/338 (36%), Gaps = 20/338 (5%)

Query: 12  MRWMIMFIILVSLYFL-----KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           +R +I+     + ++L     +G   PV+ ALI+    WP       +K   S   A+I+
Sbjct: 63  IRILIIAATAFATWYLLKQVWRG-VLPVILALIVCTVLWPPTIWM-RRKGIPSGIAALIS 120

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            ++    F   +  +      + + L  +     Q    +  WL   P  + + EL  + 
Sbjct: 121 ILASFGFFGFLIWIIAPDVGRQSQTLYFQAFEGIQK---IQLWLQGPPLSLDSEELNDRI 177

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            +     +  S T                   +     +++  +++  FFF +DG     
Sbjct: 178 NAAAGWFQSKSGTIAGEIFSGL---------GVATSVLVTLGVVLVLTFFFLKDGEKFLP 228

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +  +       +  ++       +        ++++ + + +G    L GVP  +AL V
Sbjct: 229 WVRGIVGKRAGWHLTELLARSWITLCGFVRAQALVSLVDAIAIGGGLLLLGVPMALALAV 288

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +T I   IP  GA ++ T   +  L+   +  A    +       +    L P L    +
Sbjct: 289 LTFIAGFIPIVGAFVAGTLAVLVALVSLGLTKAVITLIIVLAVQQLEGNVLSPILQSRAM 348

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L  +     +  G    G++G F+     A+IAV+++
Sbjct: 349 NLHPVVVLVSVTLGGSLFGIVGAFLAVPTAAMIAVLFR 386


>gi|295702680|ref|YP_003595755.1| hypothetical protein BMD_0519 [Bacillus megaterium DSM 319]
 gi|294800339|gb|ADF37405.1| Conserved Hypothetical Protein [Bacillus megaterium DSM 319]
          Length = 380

 Score = 99.5 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 54/327 (16%), Positives = 126/327 (38%), Gaps = 7/327 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI++    F+K    P++ A I  +   P+      K  +      +I+ + +  + I
Sbjct: 40  IGFILIPISIFIKTIALPIILAGICFYLFNPLVDFLERKGVKR-----IISILVLYIVII 94

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGI-PVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
             L  +    +  +K  V +++         V   ++++    +  +      +    + 
Sbjct: 95  GALAIIISSVIPPLKNQVDRLIDNIPELTHDVQHAVTNLSNNRYVEQGLQSANTDLDKIS 154

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
             +   L      F     +  G I  +  LS+  +   LF+  +DG ++   +  L  +
Sbjct: 155 KDASKHLSKYVSGFSSGIVNFVGTIT-EIILSVAVLPFILFYLLKDGKNLPNYIVKLLPN 213

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
              +  K I   +   + +   G   +AI  G++L   Y + G+   + L +I  +  ++
Sbjct: 214 RSRSEAKFILADMNHALSAYIRGQIFVAICIGVLLFIGYLIIGLDYALLLAIIAMVTNVV 273

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P   PI     +I +    + F    L +  A+   +  K + P ++G  + +  +   F
Sbjct: 274 PYLGPIIAIIPAIIIAFITSPFMLVKLAIVWAVVQLLEGKVISPQIMGRSLDIHPITVIF 333

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVI 341
            ++      G++G+ +     A++ VI
Sbjct: 334 VILTAGNLFGIIGIILAVPGYAVLKVI 360


>gi|270291466|ref|ZP_06197688.1| permease [Pediococcus acidilactici 7_4]
 gi|304385181|ref|ZP_07367527.1| membrane protein [Pediococcus acidilactici DSM 20284]
 gi|270280312|gb|EFA26148.1| permease [Pediococcus acidilactici 7_4]
 gi|304329375|gb|EFL96595.1| membrane protein [Pediococcus acidilactici DSM 20284]
          Length = 381

 Score = 99.5 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 46/310 (14%), Positives = 106/310 (34%), Gaps = 4/310 (1%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P++ A ++ +   P+     S+ +        I  V V  L +  ++ +      +   L
Sbjct: 60  PIILAGVLYYLLNPLVDRLESRFKMKRVVSISIIFVGVAILIVAGVVAVIPVIREQTAAL 119

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
           +          I     ++ I       +   +               + +   + +   
Sbjct: 120 IQNWPDYWNAAI---EKINGILNDPRLGDFQKQFHGVSSETIQSWSKKVTSVANNTVTSL 176

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
            S   +I     + II M   LF+  RDG  + + L       +   + +I   +   + 
Sbjct: 177 GSVLSLIT-KVVIGIITMPFILFYLLRDGHDLPEYLAKAFPVRYRPQFLQILGEINTQLS 235

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
               G  ++A    L+    Y + G+   + L V    + +IP          SI +   
Sbjct: 236 QYIRGQLVVAFFVALMFFIGYLVIGLKFALTLAVAAGFLNLIPYLGSFLAMVPSIVIGAF 295

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
            +      + +  AIE  +  + + P ++G  + +  +     L+   +  GL+G+  G 
Sbjct: 296 ISPVMLVKVLIVFAIEQTLEGRFISPLVLGSNLAIHPVTILVVLLASGQMFGLVGVIFGI 355

Query: 333 VLMALIAVIW 342
              A++ V++
Sbjct: 356 PAYAVLKVLF 365


>gi|330684507|gb|EGG96222.1| putative membrane protein [Staphylococcus epidermidis VCU121]
          Length = 406

 Score = 99.5 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 135/358 (37%), Gaps = 18/358 (5%)

Query: 10  GIMRWMIMFIILVSL----YFLKGFF-------APVLSALIIGFTSWPIYSSFISKKEES 58
           G++  +++ I++       Y  + F        AP++ +LII +   P+ +     +   
Sbjct: 39  GLLALVLLGIVIFIFDKVSYVFEPFIIIFNTIAAPIIVSLIIFYLFNPLVNLMERYRIPR 98

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEM-KELVSKVVLANQHGIPVPRWLSDIPGGM 117
                ++  + +    +  +  +    +  +  +L S +  + Q+       ++ +    
Sbjct: 99  -----LVGIMIIYIAIVGIIALIVNLLIPVIGSQLGSFINNSPQYFKKFTNTINKLTSNS 153

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
             +  +++      SL     T L      F  + A+ F     +  + I+     LFF 
Sbjct: 154 IFAGYYSQINDQLNSLTKKIPTMLSDYFDGFGSKLAT-FAEAVANVGVVIVTTPFVLFFM 212

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            +DG        ++    F   +  +   +   + S   G  I++   G++L   Y + G
Sbjct: 213 LKDGHKFKDFTTNIMPPKFRKDFHDLLEKMSVQVGSYIQGQIIVSFCIGVLLFIGYSIIG 272

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           +   + L  I A+ +++P   P    + +I + I  +      L +   +  F     + 
Sbjct: 273 LKYSLILACIAAVTSVVPYLGPTIAISPAIVIAIITSPLMVLKLAIVWTLVQFFEGHFIS 332

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           P ++G  +K+  L   F L+     +G++G+ +G    A++ V+     +  K    +
Sbjct: 333 PNIMGKTLKIHPLTIIFILLCAGNLLGIVGVILGIPGYAVLKVLVSHVFLLFKRRYNR 390


>gi|262203276|ref|YP_003274484.1| hypothetical protein Gbro_3393 [Gordonia bronchialis DSM 43247]
 gi|262086623|gb|ACY22591.1| protein of unknown function UPF0118 [Gordonia bronchialis DSM
           43247]
          Length = 426

 Score = 99.5 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 43/323 (13%), Positives = 111/323 (34%), Gaps = 23/323 (7%)

Query: 17  MFIILVSLYFLKGFFAPVLS--------ALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +++ +L+ +  +    L         A+I+    WP    ++          +V+  +
Sbjct: 57  IILVVATLWVVM-WLLAKLWVILLPILLAIIVCTILWPP-VRWMRNHGVPPAAASVVMML 114

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +F   +  +    + +  +L ++     +    +  W+   P  +   +L     +
Sbjct: 115 VAVGVFAGVIGAIVPSVVDQAPDLANRATDGVKK---LQDWVQGPPLNVRDEQLDNVVHT 171

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               L+  S T         I +             ++I   ++ +FFF +DG      L
Sbjct: 172 ITDKLQSSSST---------IAQGVFSGVGTATSLLVTIFSALVLVFFFLKDGPKFVPWL 222

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                    ++  ++   +   +        +++  +  ++G    +  +P    L VIT
Sbjct: 223 ARNLGKPTGSHVGEVLNRMWASLGGFIRTQALVSFVDAALIGIGLVILDIPLAGVLIVIT 282

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP  GA ++     +  L+   + +A  +         +    L+P+L    + L
Sbjct: 283 FLGGFIPIVGAFVAGALAVLIALVSNGLTSALIVLAIILAVQQLEGNVLQPWLQSKSMDL 342

Query: 308 PFLPTFFGLVGGVRTMGLLGLFI 330
             +     +  G    G+ G F+
Sbjct: 343 HAVIVLLSVTLGGTLFGITGAFL 365


>gi|116629975|ref|YP_815147.1| permease [Lactobacillus gasseri ATCC 33323]
 gi|238853587|ref|ZP_04643957.1| transport protein [Lactobacillus gasseri 202-4]
 gi|282851417|ref|ZP_06260782.1| membrane family protein [Lactobacillus gasseri 224-1]
 gi|311110392|ref|ZP_07711789.1| membrane protein [Lactobacillus gasseri MV-22]
 gi|116095557|gb|ABJ60709.1| Predicted permease [Lactobacillus gasseri ATCC 33323]
 gi|238833805|gb|EEQ26072.1| transport protein [Lactobacillus gasseri 202-4]
 gi|282557385|gb|EFB62982.1| membrane family protein [Lactobacillus gasseri 224-1]
 gi|311065546|gb|EFQ45886.1| membrane protein [Lactobacillus gasseri MV-22]
          Length = 393

 Score = 99.5 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 49/316 (15%), Positives = 106/316 (33%), Gaps = 4/316 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F      P+L A I  +   P+      K +       ++  V V+   I  +  L    
Sbjct: 52  FFNAILPPILVASIQYYLMDPVVDWMEKKLKVPRIITIILLFVIVLGGLIWIINTLIPII 111

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             +   L+       Q        +   P          + +S  Q+    +      + 
Sbjct: 112 QHQTDSLIKNWPAYWQDAQKGFEKMIRDPRLNGVRGGINQAVSDAQTKMFKT----GQDS 167

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            +      S    +     ++++     LFF  +DG  ++  +           +  +  
Sbjct: 168 FNLALSNLSSAVNVITMIFMTLLTAPFVLFFMLKDGHRLNPYVTKFAPQRLQPSFSSLLS 227

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   + S   G   +A   G++    Y + G+   + L V+  ++ MIP          
Sbjct: 228 DINGAVASYIRGQITVAFWVGVMFAIGYSVIGLNYGITLAVLAGVLNMIPYFGTFIAFIP 287

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +I L +  +      + +  AIE  +  + + P ++G  + +  + T   L+G     GL
Sbjct: 288 AIILGLISSPMMLVKVLIVFAIEQTLEGRVISPLVMGNKMNMNPVTTILLLIGASAVAGL 347

Query: 326 LGLFIGPVLMALIAVI 341
            G+     + A+I +I
Sbjct: 348 WGVIFAIPVYAVIKII 363


>gi|237750422|ref|ZP_04580902.1| amaA [Helicobacter bilis ATCC 43879]
 gi|229373952|gb|EEO24343.1| amaA [Helicobacter bilis ATCC 43879]
          Length = 349

 Score = 99.5 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 62/362 (17%), Positives = 145/362 (40%), Gaps = 28/362 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  + +   +   + + +L   + +   +L A ++   +  +     +  + ++   ++ 
Sbjct: 1   MQSKIVFGLLFGGVCVATLMLYQAYLFNILIAFLLCVATIWLKHWLQNYVK-NALLASLF 59

Query: 66  ATVSVMCLFIVPLLFLFY--YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           A + ++ L  +P+LF+ Y  +  ++M   +S   + +Q  + +      +P         
Sbjct: 60  ALLLMIGLVFIPVLFVCYRAFLGVKMINWLSLQSMFDQSKLALQNLAEKLPFIH------ 113

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                    L  L            + + +S  G   L + +    +I+ LF F+  G  
Sbjct: 114 -------DYLPSLLNEISFAKISGIVLKLSSIVGENGLKFIIDGFVIIVFLFVFFYFGER 166

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +   +  +      A   +++  V   +R  FL      + +G   G   +  G    V 
Sbjct: 167 LYAYMKRILP-FEEAQINEVAMEVSGTLRLVFLSTFFNVVMQGTAFGIIAYFFGFDG-VL 224

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLV 301
           LG++  I +MIP  G  I +  +   L+ +G+   A  + L+ A+ + FI+D  ++P+L+
Sbjct: 225 LGILYGICSMIPIVGGVIVWLPICAILVYQGDFKGAVIVGLYSAVFIGFIIDNIVKPWLI 284

Query: 302 G--------GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G         P+++     FF ++ G+   G  G+ IGP + AL   + +       +  
Sbjct: 285 GIVNKRILRTPLQINEFVIFFAILAGIGAFGFWGIIIGPAITALFIALLRVYEHEFVDKN 344

Query: 354 EK 355
           ++
Sbjct: 345 KE 346


>gi|257898989|ref|ZP_05678642.1| conserved hypothetical protein [Enterococcus faecium Com15]
 gi|257836901|gb|EEV61975.1| conserved hypothetical protein [Enterococcus faecium Com15]
          Length = 372

 Score = 99.5 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 60/334 (17%), Positives = 115/334 (34%), Gaps = 7/334 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F    FAPVL A  + +   PI    + K +    +   I  + ++   I  LL +    
Sbjct: 40  FFSTLFAPVLIAGFLYYLLNPI-VKLLMKAKIKRIWAVAIVLLLLVAAIIWILLSVIPSL 98

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  L S +    +      + ++++P            ++       +S   +    
Sbjct: 99  VQQISSLASNMPDFIKQVENWLKEVAELPVFKEVD------INKYFEQLDISYGTIIQQF 152

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +               + II     LF+  +DG  +   +             ++  
Sbjct: 153 LSGVSNSLGSIVGTIASATVVIITAPFILFYMLKDGEKLVPNIQQFFPEKRRNQIVELLG 212

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K + +   G  I  +  G      Y + GV      GVI  +  +IP   P    A 
Sbjct: 213 QLNKTLANYISGQAIECLFVGTFTFLGYMIIGVDYAFLFGVIAGLTNLIPYLGPYLGLAP 272

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +  + I  +   A    L   I   +    + P ++G  +K+  L     L+      GL
Sbjct: 273 AFLVTIFNDPIKALLCCLVVLIVQQLDGNIIYPNVIGKSLKIHPLTIIIVLLVAGNIAGL 332

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           LG+F+G    A+   I    I  IKE+K+  +  
Sbjct: 333 LGIFLGVPFYAICKTIISYIIKIIKEDKQNENKK 366


>gi|257081875|ref|ZP_05576236.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|256989905|gb|EEU77207.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
          Length = 394

 Score = 99.5 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 109/318 (34%), Gaps = 5/318 (1%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           PV+ A I+ +   PI      K+          + + +  L +  L++     + +++E 
Sbjct: 65  PVIMAGILYYLLNPIVDYLEKKQISRVW-----SIIGLFILIVALLIWGGIVIVPKIREQ 119

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
               V      I      S           + + L       + S   +  N   F  + 
Sbjct: 120 SVSFVNHFPQYIDTIDQKSQEILSDPLFAQFREQLEAAGDKVVSSLGTIIKNVSTFTVQG 179

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
              F        ++II M   LF+  +DG +++  L             K+   V   + 
Sbjct: 180 IGNFFGAVATIFVAIITMPFILFYLLKDGKNLAPYLMKFLPVKMRKPTLKVLAEVNDQVS 239

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
           S   G   +A    ++    + + G+   V LG+    + +IP          +++L I 
Sbjct: 240 SYIRGQLTVAFAVAIMFMIGFSIIGLDYAVTLGIAAGFLNLIPYLGSFLAMIPAVFLGIV 299

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
                   + +  AIE  +  + + P ++G  + +  +     L+   +  G++G+ +G 
Sbjct: 300 SGPALLIKVLIVFAIEQTVEGRFISPLVLGSQLSIHPVTILVVLLTSGKLFGIVGVILGI 359

Query: 333 VLMALIAVIWKESIMAIK 350
            + A   VI        +
Sbjct: 360 PVYAAAKVIITHIFEWYQ 377


>gi|56963356|ref|YP_175087.1| transporter [Bacillus clausii KSM-K16]
 gi|56909599|dbj|BAD64126.1| transporter [Bacillus clausii KSM-K16]
          Length = 358

 Score = 99.1 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 49/315 (15%), Positives = 107/315 (33%), Gaps = 11/315 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L     P+  A +  +   PI   F+ +          +  ++ +      L +     
Sbjct: 39  ILATLLGPLCVAFVSAYLLHPIVEWFV-RLGLPRALATFMLFLAFILAIAAMLFWGLPAL 97

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++KE +            +P  L+++   +   +   ++L +P    +   +    + 
Sbjct: 98  AAQVKEAMD----------VLPGQLAEVKKSLLNLQRTAENLPNPLDDHVGEWSVKIESF 147

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
                    +  +  L   ++ I +   +F+  +D   + +    L    +       + 
Sbjct: 148 AKAGLDQIEQVIIRMLQSFMTWIVVPFLVFYLLKDYELLKRVAFYLTPRKWRKGLTAYAN 207

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            V +   S   G  ++A   G++   A W+ GVP  + LG        IP    I     
Sbjct: 208 DVDRTFGSYVRGQLLVAFCVGVLSTVALWILGVPYPIVLGFFVGATDFIPYFGAIIGAIP 267

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++   +  +        +   I   I    L P +VG  + L  +     L+ GV   G+
Sbjct: 268 AVGAALLESTTLGLYTVIALVIIQQIEGNLLSPVIVGRTVHLHPMIIIIALLIGVEAGGI 327

Query: 326 LGLFIGPVLMALIAV 340
           +GL I   + A++ V
Sbjct: 328 VGLLIAVPVAAILKV 342


>gi|229030594|ref|ZP_04186629.1| hypothetical protein bcere0028_26620 [Bacillus cereus AH1271]
 gi|228730761|gb|EEL81706.1| hypothetical protein bcere0028_26620 [Bacillus cereus AH1271]
          Length = 302

 Score = 99.1 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 44/297 (14%), Positives = 112/297 (37%), Gaps = 4/297 (1%)

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                ++  + ++ L  V +  +      ++ +LV  +    + G     ++ D+     
Sbjct: 8   RNLAILLLYLFIITLTAVGVGVVVPTISQQLMDLVKNMPGYIKEG---KLYIQDLSHHRL 64

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
              L T++    ++++  +  +LK +  + I   A+    I  +  L I  +   LF+ +
Sbjct: 65  FEWLSTQNYVSIETIEKNAIEYLK-DIPNTITSSATALFGIITNVALVIFTVPFILFYMF 123

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +DG +   +  SL    +     +I +   + + +   G  ++ I  G      Y +  +
Sbjct: 124 KDGHAFPGKAVSLLPESYREEGLRIIKETNETLSAYIQGQALVCIFVGAFTFIGYLIIDL 183

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P    LG+I A   +IP   P    A ++ + +  +   A  + +   I        + P
Sbjct: 184 PYAFVLGIIAAFTNIIPNLGPFIGAAPAVIVGLFVSPMQALYVIIIVTIVQQFESNIISP 243

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            ++   + +  L     ++G     G++G+ +   + A+   +    +   K  +  
Sbjct: 244 RIMSSKLNIHPLTIIILILGVGNFAGIIGMILAVPVYAVTKTVVSNLVRLFKTKRSN 300


>gi|239632127|ref|ZP_04675158.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239526592|gb|EEQ65593.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 382

 Score = 99.1 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 56/324 (17%), Positives = 113/324 (34%), Gaps = 7/324 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           F+      F      P+LSA  + +   PI    + K   S     ++  + V+   ++ 
Sbjct: 22  FLFAPVATFFSTLLIPILSAGFLFYLFNPI-VKLLQKFHISRNISILLIFLVVIGALVLV 80

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
            + +    + ++ + V+ +    +    V  ++S      W   L      +  SL+I  
Sbjct: 81  FMAVLPNLIYQVTQFVTNIPDFLKG---VRSFISKASHYTWYQRL--NIGKYVASLQISP 135

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              L      F     +  G +     +SII + + LF+F +DG +    +  +  H + 
Sbjct: 136 SKVLSKVLGGFSTGLPTVIGSVA-SMMISIITIPVMLFYFLKDGENFVPSIQKMLPHRYH 194

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   +   +     G  I  +  G      Y + G+P    LG I  I+ +IP  
Sbjct: 195 EEVATVFTRLNSTLSHYIGGQAIECLFVGTFTFIGYLIIGMPYAYLLGFIAGIVTIIPYL 254

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P    A ++ +           + +   I        + P ++G  + +  L     L+
Sbjct: 255 GPYIGIAPALAIAATEGWTKMLLVVVVVVIIQMTDGNFIYPNVIGRSLDIHPLTIIILLM 314

Query: 318 GGVRTMGLLGLFIGPVLMALIAVI 341
                 GLLG  +     A+I  +
Sbjct: 315 VAGNLWGLLGTILAVPTYAVIKTV 338


>gi|307290384|ref|ZP_07570299.1| hypothetical protein HMPREF9509_00687 [Enterococcus faecalis
           TX0411]
 gi|312899976|ref|ZP_07759294.1| conserved hypothetical protein [Enterococcus faecalis TX0470]
 gi|306498577|gb|EFM68079.1| hypothetical protein HMPREF9509_00687 [Enterococcus faecalis
           TX0411]
 gi|311292972|gb|EFQ71528.1| conserved hypothetical protein [Enterococcus faecalis TX0470]
 gi|315030341|gb|EFT42273.1| conserved hypothetical protein [Enterococcus faecalis TX4000]
          Length = 394

 Score = 99.1 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 109/318 (34%), Gaps = 5/318 (1%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           PV+ A I+ +   PI      K+          + + +  L +  L++     + +++E 
Sbjct: 65  PVIMAGILYYLLNPIVDYLEKKQISRVW-----SIIGLFILIVALLIWGGIVIVPKIREQ 119

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
               V      I      S           + + L       + S   +  N   F  + 
Sbjct: 120 SVSFVNHFPQYIDTIDQKSQEILSDPLFAQFREQLEAAGDKVVSSLGTIIKNVSTFTVQG 179

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
              F        ++II M   LF+  +DG +++  L             K+   V   + 
Sbjct: 180 IGNFFGAVATIFVAIITMPFILFYLLKDGKNLAPYLIKFLPVKMRKPTLKVLAEVNDQVS 239

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
           S   G   +A    ++    + + G+   V LG+    + +IP          +++L I 
Sbjct: 240 SYIRGQLTVAFAVAIMFMIGFSVIGLDYAVTLGIAAGFLNLIPYLGSFLAMIPAVFLGIV 299

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
                   + +  AIE  +  + + P ++G  + +  +     L+   +  G++G+ +G 
Sbjct: 300 SGPALLIKVLIVFAIEQTVEGRFISPLVLGSQLSIHPVTILVVLLTSGKLFGIVGVILGI 359

Query: 333 VLMALIAVIWKESIMAIK 350
            + A   VI        +
Sbjct: 360 PVYAAAKVIITHIFEWYQ 377


>gi|291531870|emb|CBK97455.1| Predicted permease [Eubacterium siraeum 70/3]
          Length = 468

 Score = 99.1 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 57/304 (18%), Positives = 103/304 (33%), Gaps = 4/304 (1%)

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGM 117
                 I  +  + +    +  L    +  +  LV+ +     Q    V + L + P   
Sbjct: 108 RVMSVAITMILALLILTGIIWVLLPQLIDTITMLVNNMPTYVTQISDWVSQTLRNYPEVE 167

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGID-FIPRFASRFGMIFLDYCLSIIFMIIALFF 176
                +T  +S   +  + +E   + N I   I         +F++  L  +  I  L  
Sbjct: 168 AYVLQFTGGISDMLNNWLSTELLPQMNNIWNLISSNVMNIISVFMNLLLGFVIAIYFLNS 227

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
                    + L  L +          +R V K       G  + +   G+V      + 
Sbjct: 228 KELFAAQFKKILYCLFKPKVATKIINSTREVNKSFGQFITGKILDSFIIGMVYVLLMSIF 287

Query: 237 GVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
            +P  V  GV+  I  +IP  G  I +    + L++  +        +   I   I    
Sbjct: 288 NMPYAVLCGVVMGIFCIIPYFGPFIGYIPCMLLLVLV-DPIQCIYFTIMVVIIQNIDGNV 346

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L P ++G    L      FG++ G    G +GL IG  L A++    K  +    ENK+ 
Sbjct: 347 LAPKIIGDSTGLSSFWVIFGMLVGQGLFGFVGLIIGIPLFAVVYSFTKNRVKKRLENKDL 406

Query: 356 ISSN 359
            S +
Sbjct: 407 PSDS 410


>gi|227519714|ref|ZP_03949763.1| permease [Enterococcus faecalis TX0104]
 gi|227554097|ref|ZP_03984144.1| permease [Enterococcus faecalis HH22]
 gi|229545030|ref|ZP_04433755.1| permease [Enterococcus faecalis TX1322]
 gi|229549274|ref|ZP_04437999.1| permease [Enterococcus faecalis ATCC 29200]
 gi|255971986|ref|ZP_05422572.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|256616886|ref|ZP_05473732.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256763240|ref|ZP_05503820.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256957841|ref|ZP_05562012.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256961160|ref|ZP_05565331.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256963721|ref|ZP_05567892.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|257079779|ref|ZP_05574140.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|257087584|ref|ZP_05581945.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257090743|ref|ZP_05585104.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257416791|ref|ZP_05593785.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|293384106|ref|ZP_06630000.1| membrane protein [Enterococcus faecalis R712]
 gi|293386921|ref|ZP_06631490.1| membrane protein [Enterococcus faecalis S613]
 gi|307270682|ref|ZP_07551973.1| hypothetical protein HMPREF9498_02775 [Enterococcus faecalis
           TX4248]
 gi|307271668|ref|ZP_07552939.1| hypothetical protein HMPREF9514_00419 [Enterococcus faecalis
           TX0855]
 gi|307276850|ref|ZP_07557961.1| hypothetical protein HMPREF9521_02462 [Enterococcus faecalis
           TX2134]
 gi|307287573|ref|ZP_07567616.1| hypothetical protein HMPREF9505_01021 [Enterococcus faecalis
           TX0109]
 gi|312902373|ref|ZP_07761579.1| conserved hypothetical protein [Enterococcus faecalis TX0635]
 gi|312907943|ref|ZP_07766926.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 512]
 gi|312953633|ref|ZP_07772470.1| conserved hypothetical protein [Enterococcus faecalis TX0102]
 gi|312978529|ref|ZP_07790267.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 516]
 gi|227072802|gb|EEI10765.1| permease [Enterococcus faecalis TX0104]
 gi|227176723|gb|EEI57695.1| permease [Enterococcus faecalis HH22]
 gi|229305511|gb|EEN71507.1| permease [Enterococcus faecalis ATCC 29200]
 gi|229309922|gb|EEN75909.1| permease [Enterococcus faecalis TX1322]
 gi|255963004|gb|EET95480.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|256596413|gb|EEU15589.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256684491|gb|EEU24186.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256948337|gb|EEU64969.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256951656|gb|EEU68288.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256954217|gb|EEU70849.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256987809|gb|EEU75111.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256995614|gb|EEU82916.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|256999555|gb|EEU86075.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257158619|gb|EEU88579.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
 gi|291078586|gb|EFE15950.1| membrane protein [Enterococcus faecalis R712]
 gi|291083591|gb|EFE20554.1| membrane protein [Enterococcus faecalis S613]
 gi|306501311|gb|EFM70614.1| hypothetical protein HMPREF9505_01021 [Enterococcus faecalis
           TX0109]
 gi|306506487|gb|EFM75646.1| hypothetical protein HMPREF9521_02462 [Enterococcus faecalis
           TX2134]
 gi|306511546|gb|EFM80545.1| hypothetical protein HMPREF9514_00419 [Enterococcus faecalis
           TX0855]
 gi|306512992|gb|EFM81633.1| hypothetical protein HMPREF9498_02775 [Enterococcus faecalis
           TX4248]
 gi|310626034|gb|EFQ09317.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 512]
 gi|310628471|gb|EFQ11754.1| conserved hypothetical protein [Enterococcus faecalis TX0102]
 gi|310634043|gb|EFQ17326.1| conserved hypothetical protein [Enterococcus faecalis TX0635]
 gi|311288678|gb|EFQ67234.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 516]
 gi|315025258|gb|EFT37190.1| conserved hypothetical protein [Enterococcus faecalis TX2137]
 gi|315032735|gb|EFT44667.1| conserved hypothetical protein [Enterococcus faecalis TX0017]
 gi|315035807|gb|EFT47739.1| conserved hypothetical protein [Enterococcus faecalis TX0027]
 gi|315143766|gb|EFT87782.1| conserved hypothetical protein [Enterococcus faecalis TX2141]
 gi|315148577|gb|EFT92593.1| conserved hypothetical protein [Enterococcus faecalis TX4244]
 gi|315150014|gb|EFT94030.1| conserved hypothetical protein [Enterococcus faecalis TX0012]
 gi|315151900|gb|EFT95916.1| conserved hypothetical protein [Enterococcus faecalis TX0031]
 gi|315155484|gb|EFT99500.1| conserved hypothetical protein [Enterococcus faecalis TX0043]
 gi|315159219|gb|EFU03236.1| conserved hypothetical protein [Enterococcus faecalis TX0312]
 gi|315164970|gb|EFU08987.1| conserved hypothetical protein [Enterococcus faecalis TX1302]
 gi|315168593|gb|EFU12610.1| conserved hypothetical protein [Enterococcus faecalis TX1341]
 gi|315170147|gb|EFU14164.1| conserved hypothetical protein [Enterococcus faecalis TX1342]
 gi|315173354|gb|EFU17371.1| conserved hypothetical protein [Enterococcus faecalis TX1346]
 gi|315576206|gb|EFU88397.1| conserved hypothetical protein [Enterococcus faecalis TX0309B]
 gi|315579217|gb|EFU91408.1| conserved hypothetical protein [Enterococcus faecalis TX0630]
 gi|315582922|gb|EFU95113.1| conserved hypothetical protein [Enterococcus faecalis TX0309A]
 gi|327535833|gb|AEA94667.1| permease protein [Enterococcus faecalis OG1RF]
          Length = 394

 Score = 99.1 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 109/318 (34%), Gaps = 5/318 (1%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           PV+ A I+ +   PI      K+          + + +  L +  L++     + +++E 
Sbjct: 65  PVIMAGILYYLLNPIVDYLEKKQISRVW-----SIIGLFILIVALLIWGGIVIVPKIREQ 119

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
               V      I      S           + + L       + S   +  N   F  + 
Sbjct: 120 SVSFVNHFPQYIDTIDQKSQEILSDPLFAQFREQLEAAGDKVVSSLGTIIKNVSTFTVQG 179

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
              F        ++II M   LF+  +DG +++  L             K+   V   + 
Sbjct: 180 IGNFFGAVATIFVAIITMPFILFYLLKDGKNLAPYLMKFLPVKMRKPTLKVLAEVNDQVS 239

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
           S   G   +A    ++    + + G+   V LG+    + +IP          +++L I 
Sbjct: 240 SYIRGQLTVAFAVAIMFMIGFSVIGLDYAVTLGIAAGFLNLIPYLGSFLAMIPAVFLGIV 299

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
                   + +  AIE  +  + + P ++G  + +  +     L+   +  G++G+ +G 
Sbjct: 300 SGPALLIKVLIVFAIEQTVEGRFISPLVLGSQLSIHPVTILVVLLTSGKLFGIVGVILGI 359

Query: 333 VLMALIAVIWKESIMAIK 350
            + A   VI        +
Sbjct: 360 PVYAAAKVIITHIFEWYQ 377


>gi|91773302|ref|YP_565994.1| hypothetical protein Mbur_1326 [Methanococcoides burtonii DSM 6242]
 gi|91712317|gb|ABE52244.1| protein of unknown function UPF0118 [Methanococcoides burtonii DSM
           6242]
          Length = 354

 Score = 99.1 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 46/353 (13%), Positives = 136/353 (38%), Gaps = 19/353 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ +  + +  L      ++  ++  +   PIY+    K+         +  +
Sbjct: 18  KMVLSVALVLLFSLFIIILLPIADGIMLGIVFAYIGRPIYNFIKMKRH--------LGAL 69

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
                 ++P++ +   G++E+   +  +    ++   V   L D    +   + + +++ 
Sbjct: 70  VATMFIVIPIVMILGMGIIEIANQLMWIA---ENQGAVIESLLDFIRNLNIPDAYYENI- 125

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             Q++   S + L   G      +A    M    + ++++  ++  +F   DG  + + +
Sbjct: 126 -RQTIWNSSISILPLLGNLVFVSYARGIAM----FMINLLVAVLVCYFLLADGDGLYRSV 180

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +         K+    +  ++   F+G    A+    +    ++  G+   +AL  + 
Sbjct: 181 LRIIPKGNQHLVKRYVHHMDIILSGVFIGNAYAALSVSTLSVIVFYAFGLSHVLALATLI 240

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFI-VDKTLRPFLVGGPIK 306
            + ++IP  A  +    ++I         +A   F+  +I ++   +  LRP+L      
Sbjct: 241 FVASVIPMFAGYMVLVVLTIVRYFSLGFESALIFFVVSSIIIYAPPEFFLRPYLASIKSH 300

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +         +GG    G+ G F  P+L+  +   ++  +  ++    + S++
Sbjct: 301 IHPFLIMLAFLGGAFVGGIAGFFAAPILLGTLVSAYRVYVEDLEYVSPETSAD 353


>gi|293557070|ref|ZP_06675629.1| putative permease [Enterococcus faecium E1039]
 gi|291600758|gb|EFF31051.1| putative permease [Enterococcus faecium E1039]
          Length = 424

 Score = 99.1 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/332 (16%), Positives = 121/332 (36%), Gaps = 10/332 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +     P+L ALI+ +   P+          S     +I  V ++ L  +  ++L  + 
Sbjct: 81  IIATILPPLLFALILYYLLEPVIKRLSKHL--SRNLSVIIVYVIILFLLGLGSVWLVPFL 138

Query: 86  MLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
             + K L+S +  L       + ++L   P     ++ +         +      + ++ 
Sbjct: 139 KEQAKTLISSLPDLFQDFQESLRQFLEKTPFADSFNQFFASIDDVTSDIAGFIGNYWESG 198

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
                 +  S          +++    I  FF  RD     Q + ++    F   +K ++
Sbjct: 199 -----AQRISNIFSTVTAIFITLFTGPIVAFFLLRDPQKFYQSVLAIVPPAFRTDFKNLT 253

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
           +I  + + S   G  I +   G V    + L G+     L +   ++ +IP  G  I+F 
Sbjct: 254 KIANQQLGSFLKGQIIASFILGAVYWVCFLLIGLEFASVLAISAGLLCIIPYIGPFIAFF 313

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
              I             + +W A++L   D  + P ++G  +++  +     L+     M
Sbjct: 314 PGLIIAFQDSTFMAVKFVIVWFAVQLLHGDLVI-PRVMGDRLQIHPITILIVLLVMGDLM 372

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G++G+  G  +  L+ ++        K+   K
Sbjct: 373 GIVGVIFGIPIYTLVKLLVTFIFRKFKQRYNK 404


>gi|262375590|ref|ZP_06068823.1| sporulation integral membrane protein YtvI [Acinetobacter lwoffii
           SH145]
 gi|262309844|gb|EEY90974.1| sporulation integral membrane protein YtvI [Acinetobacter lwoffii
           SH145]
          Length = 406

 Score = 99.1 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/346 (16%), Positives = 127/346 (36%), Gaps = 11/346 (3%)

Query: 6   LNPQGIMRWMIMF---IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  + + R +I+    +IL  LY LK    P ++A +I +   P+ +  + +   +    
Sbjct: 1   MVDRTLRRILILAGIALILWVLYLLKPVVVPFVAAFLIAYLFSPLVN-VLHRIGLARWLS 59

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ-HGIPVPRWLSDIPGGMWASE 121
             I  + +  +  + + +L      ++      +             WLSD         
Sbjct: 60  ISIVFIGIGIVVTLVMWYLVPLVWQQLMYARDSIPAGIHWINYTFLPWLSD---SFNLVP 116

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +          +    +T    + I  +    ++ G+ F+    +I+ + I  F+F  D 
Sbjct: 117 MEIDTDQISSVVMDYVQTNYSADSIQAMLLKLAQSGLNFIQIGGTIVLIPIIAFYFLLDW 176

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   L  L    +      I      V+ +   G  ++ +  G+V      L G+   
Sbjct: 177 DRMLDSLRRLIPRPYEKTTLNIVSECHSVLGAFVKGQFLVMVLLGVVYAVGLQLIGLEIG 236

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRP 298
           + +G+I  + ++IP          ++         + +    + +   +   +    L+P
Sbjct: 237 LIIGMIAGLCSIIPYLGFAVGIIAAVIATFFQFGIDWWQLVLVGIVFMVGQAVEGYILQP 296

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           FL+G  I L  +   F ++ G +  G LG+ I   + A+I V+ + 
Sbjct: 297 FLLGDKIGLSPVAVVFAVLAGAQLAGFLGMLIALPVAAVIVVLLRH 342


>gi|257888574|ref|ZP_05668227.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257897049|ref|ZP_05676702.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|293378740|ref|ZP_06624898.1| putative membrane protein [Enterococcus faecium PC4.1]
 gi|257824628|gb|EEV51560.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257833614|gb|EEV60035.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|292642668|gb|EFF60820.1| putative membrane protein [Enterococcus faecium PC4.1]
          Length = 372

 Score = 99.1 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 60/334 (17%), Positives = 115/334 (34%), Gaps = 7/334 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F    FAPVL A  + +   PI    + K +    +   I  + ++   I  LL +    
Sbjct: 40  FFSTLFAPVLIAGFLYYLLNPI-VKLLMKAKIKRIWAVAIVLLLLVAAIIWILLSVIPSL 98

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  L S +    +      + ++++P            ++       +S   +    
Sbjct: 99  VQQISSLASSMPDFIKQVESWLKEVAELPVFKEVD------INKYFEQLDISYGTIIQQF 152

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +               + II     LF+  +DG  +   +             ++  
Sbjct: 153 LSGVSNSLGSIVGTIASATVVIITAPFILFYMLKDGEKLVPNIQQFFPEKRRNQIVELLG 212

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K + +   G  I  +  G      Y + GV      GVI  +  +IP   P    A 
Sbjct: 213 QLNKTLANYISGQAIECLFVGTFTFLGYMIIGVDYAFLFGVIAGLTNLIPYLGPYLGLAP 272

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +  + I  +   A    L   I   +    + P ++G  +K+  L     L+      GL
Sbjct: 273 AFLVTIFNDPIKALLCCLVVLIVQQLDGNIIYPNVIGKSLKIHPLTIIIVLLVAGNIAGL 332

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           LG+F+G    A+   I    I  IKE+K+  +  
Sbjct: 333 LGIFLGVPFYAICKTIISYIIKIIKEDKQNENKK 366


>gi|29375032|ref|NP_814185.1| hypothetical protein EF0396 [Enterococcus faecalis V583]
 gi|227553764|ref|ZP_03983813.1| permease [Enterococcus faecalis HH22]
 gi|229547716|ref|ZP_04436441.1| permease [Enterococcus faecalis TX1322]
 gi|255970953|ref|ZP_05421539.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|255973465|ref|ZP_05424051.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256617319|ref|ZP_05474165.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256852374|ref|ZP_05557750.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256957715|ref|ZP_05561886.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256963168|ref|ZP_05567339.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|257083480|ref|ZP_05577841.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|257085756|ref|ZP_05580117.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257088896|ref|ZP_05583257.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257415129|ref|ZP_05592123.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|257418175|ref|ZP_05595169.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257420681|ref|ZP_05597671.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|294780634|ref|ZP_06745995.1| putative ATP synthase F0, A subunit [Enterococcus faecalis PC1.1]
 gi|300862228|ref|ZP_07108308.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TUSoD
           Ef11]
 gi|307270055|ref|ZP_07551377.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX4248]
 gi|307272207|ref|ZP_07553467.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0855]
 gi|307275216|ref|ZP_07556362.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX2134]
 gi|307282402|ref|ZP_07562609.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0860]
 gi|307290690|ref|ZP_07570596.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0411]
 gi|312900525|ref|ZP_07759825.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0470]
 gi|312904906|ref|ZP_07764045.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0635]
 gi|312952033|ref|ZP_07770917.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0102]
 gi|29342491|gb|AAO80256.1| conserved hypothetical protein [Enterococcus faecalis V583]
 gi|227177146|gb|EEI58118.1| permease [Enterococcus faecalis HH22]
 gi|229307208|gb|EEN73195.1| permease [Enterococcus faecalis TX1322]
 gi|255961971|gb|EET94447.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|255966337|gb|EET96959.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256596846|gb|EEU16022.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256712228|gb|EEU27260.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256948211|gb|EEU64843.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256953664|gb|EEU70296.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256991510|gb|EEU78812.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|256993786|gb|EEU81088.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|256997708|gb|EEU84228.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257156957|gb|EEU86917.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
 gi|257160003|gb|EEU89963.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257162505|gb|EEU92465.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|294452244|gb|EFG20685.1| putative ATP synthase F0, A subunit [Enterococcus faecalis PC1.1]
 gi|295114222|emb|CBL32859.1| Predicted permease [Enterococcus sp. 7L76]
 gi|300848753|gb|EFK76510.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TUSoD
           Ef11]
 gi|306498242|gb|EFM67753.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0411]
 gi|306503765|gb|EFM72992.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0860]
 gi|306508084|gb|EFM77208.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX2134]
 gi|306511096|gb|EFM80106.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0855]
 gi|306513631|gb|EFM82241.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX4248]
 gi|310630033|gb|EFQ13316.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0102]
 gi|310631790|gb|EFQ15073.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0635]
 gi|311292350|gb|EFQ70906.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0470]
 gi|315026218|gb|EFT38150.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX2137]
 gi|315028476|gb|EFT40408.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX4000]
 gi|315032188|gb|EFT44120.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0017]
 gi|315035401|gb|EFT47333.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0027]
 gi|315144063|gb|EFT88079.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX2141]
 gi|315146781|gb|EFT90797.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX4244]
 gi|315153792|gb|EFT97808.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0031]
 gi|315154921|gb|EFT98937.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0043]
 gi|315158896|gb|EFU02913.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0312]
 gi|315161137|gb|EFU05154.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0645]
 gi|315167780|gb|EFU11797.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX1341]
 gi|315170577|gb|EFU14594.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX1342]
 gi|315574799|gb|EFU86990.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0309B]
 gi|315576390|gb|EFU88581.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0630]
 gi|315582246|gb|EFU94437.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0309A]
 gi|327534136|gb|AEA92970.1| hypothetical protein OG1RF_10283 [Enterococcus faecalis OG1RF]
 gi|329574935|gb|EGG56492.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX1467]
          Length = 394

 Score = 99.1 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/334 (17%), Positives = 114/334 (34%), Gaps = 6/334 (1%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
                    PVL  +I+ +   P+      K      +   I  V ++ L ++  L LF 
Sbjct: 45  FVIFSAVLGPVLFGIILFYLLNPMVKRLEKKIP--RVWAIAILYVLIIALLVLAGLQLFP 102

Query: 84  YGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
               + +EL+ +     +  +  V  +++  P                  L    + F  
Sbjct: 103 IIQDQTEELIKQFPSFWKSTLQTVQEFMAKTPFAKDLESANESINQLWGKLANSFKDFAG 162

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            + +    +             L++    I  FF  +D     + +  +    F   + +
Sbjct: 163 -DYLQTGAQGLGSVFSAVSSTFLTLFTGPIIAFFLLKDKEKFYRFVKGIIPPAFRPDFDE 221

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
            S+I    I     G  I ++  G++   A+ L G+     L +   I+ +IP  G  I+
Sbjct: 222 YSQIANIQIGDYLKGQVIASLVLGIMYWPAFLLIGLQFGSILALAAGILCIIPYIGPFIA 281

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F    I             + +W AI+L   D  + P ++G  +K+  +     L+    
Sbjct: 282 FIPGLIIAFQDSTFMVVKFVIVWFAIQLIHGDFVI-PRVMGDKLKVHPITILLVLLVMGE 340

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             GL+G+  G  +  L+ V         K+   +
Sbjct: 341 LFGLMGVIFGIPMYCLVKVTVIYLFRKFKQRYNR 374


>gi|294615250|ref|ZP_06695129.1| hypothetical protein EfmE1636_1354 [Enterococcus faecium E1636]
 gi|291591889|gb|EFF23519.1| hypothetical protein EfmE1636_1354 [Enterococcus faecium E1636]
          Length = 424

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/332 (16%), Positives = 121/332 (36%), Gaps = 10/332 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +     P+L ALI+ +   P+          S     +I  V ++ L  +  ++L  + 
Sbjct: 81  IIATILPPLLFALILYYLLEPVIKRLSKHL--SRNLSVIIVYVIILFLLGLGSVWLVPFL 138

Query: 86  MLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
             + K L+S +  L       + ++L   P     ++ +         +      + ++ 
Sbjct: 139 EEQAKTLISSLPDLFQDFQESLRQFLEKTPFADSFNQFFASIDDVTSDIAGFIGNYWESG 198

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
                 +  S          +++    I  FF  RD     Q + ++    F   +K ++
Sbjct: 199 -----AQRISNIFSTVTAIFITLFTGPIVAFFLLRDPQKFYQSVLAIVPPAFRTDFKNLT 253

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
           +I  + + S   G  I +   G V    + L G+     L +   ++ +IP  G  I+F 
Sbjct: 254 KIANQQLGSFLKGQIIASFILGAVYWVCFLLIGLEFASVLAISAGLLCIIPYIGPFIAFF 313

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
              I             + +W A++L   D  + P ++G  +++  +     L+     M
Sbjct: 314 PGLIIAFQDSTFMAVKFVIVWFAVQLLHGDLVI-PRVMGDRLQIHPITILIVLLVMGDLM 372

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G++G+  G  +  L+ ++        K+   K
Sbjct: 373 GIVGVIFGIPIYTLVKLLVTFIFRKFKQRYNK 404


>gi|220929940|ref|YP_002506849.1| hypothetical protein Ccel_2541 [Clostridium cellulolyticum H10]
 gi|220000268|gb|ACL76869.1| protein of unknown function UPF0118 [Clostridium cellulolyticum
           H10]
          Length = 392

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 109/312 (34%), Gaps = 20/312 (6%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+     P+L   ++ +   PI       +             +++  F++ L  L    
Sbjct: 44  FVYSIIFPILFGGLLYYILRPIVLMLEKGRVPHIW--------AILLAFVIVLSALILLS 95

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
                 + S+     +    +     +       + L   +L           + L    
Sbjct: 96  SYTGSIIKSQFNDFAKSLPYLYESAEN-----TINNLLKSNLLSYFDSSSFQTSDLTEKV 150

Query: 146 IDFIPRFASRFGMIFLDYCLSI-------IFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
            +F+   A   G   +++  +I       I + + LF+F +DG      +          
Sbjct: 151 SNFLQGAAKSVGKNTINFISAITNIGSVIIILPVILFYFLKDGHKFMPSIVRFVPSSQKD 210

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             +KI + +  V+ +   G  ++A   GL++   Y + G+   + L +   I  +IP   
Sbjct: 211 NIRKILKDIDFVLSNYIAGQLLVAFFIGLLMYIGYLIIGLKYSLLLAIFAMITCIIPFFG 270

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P      +I L +  N F A  +F+   I   I +  + P ++   + +  L     L+G
Sbjct: 271 PWIGIIPAILLSLADNPFMAIKIFIVMIIVQQIDNNFISPQVMKKSMDIHPLTVILLLMG 330

Query: 319 GVRTMGLLGLFI 330
            +   G +GL I
Sbjct: 331 ILPIFGFIGLII 342


>gi|227519073|ref|ZP_03949122.1| permease [Enterococcus faecalis TX0104]
 gi|227073421|gb|EEI11384.1| permease [Enterococcus faecalis TX0104]
 gi|315173850|gb|EFU17867.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX1346]
 gi|323479551|gb|ADX78990.1| conserved hypothetical protein [Enterococcus faecalis 62]
          Length = 394

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/334 (17%), Positives = 112/334 (33%), Gaps = 6/334 (1%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
                    PVL  +I+ +   P+      K      +   I  V ++ L ++  L LF 
Sbjct: 45  FVIFSAVLGPVLFGIILFYLLNPMVKRLEKKIP--RVWAIAILYVLIIALLVLAGLQLFP 102

Query: 84  YGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
               + +EL+ +           V  +++  P                  L    + F  
Sbjct: 103 IIQDQTEELIKQFPSFWKSTLQAVQEFMAKTPFAKDLESANESINQLWGKLANSFKDFAG 162

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            + +    +             L++    I  FF  +D     + +  +    F   + +
Sbjct: 163 -DYLQTGAQGLGSVFSAVSSTFLTLFTGPIIAFFLLKDKEKFYRFVKGIIPPAFRPDFDE 221

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
            S+I    I     G  I ++  G++   A+ L G+     L +   I+ +IP  G  I+
Sbjct: 222 YSQIANIQIGDYLKGQVIASLVLGIMYWPAFLLIGLQFGSILALAAGILCIIPYIGPFIA 281

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F    I             + +W AI+L   D  + P ++G  +K+  +     L+    
Sbjct: 282 FIPGLIIAFQDSTFMVVKFVIVWFAIQLIHGDFVI-PRVMGDKLKVHPITILLVLLVMGE 340

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             GL+G+  G  +  L+ V         K+   +
Sbjct: 341 LFGLMGVIFGIPMYCLVKVTVIYLFRKFKQRYNR 374


>gi|257084417|ref|ZP_05578778.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|256992447|gb|EEU79749.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
          Length = 394

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 109/318 (34%), Gaps = 5/318 (1%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           PV+ A I+ +   PI      K+          + + +  L +  L++     + +++E 
Sbjct: 65  PVIMAGILYYLLNPIVDYLEKKQISRVW-----SIIGLFILIVALLIWGGIVIVPKIREQ 119

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
               V      I      S           + + +       + S   +  N   F  + 
Sbjct: 120 SVSFVNHFPQYIDTIDQKSQEILSDPLFAQFREQIEAAGDKVVSSLGTIIKNVSTFTVQG 179

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
              F        ++II M   LF+  +DG +++  L             K+   V   + 
Sbjct: 180 IGNFFGAVATIFVAIITMPFILFYLLKDGKNLAPYLMKFLPVKMRKPTLKVLAEVNDQVS 239

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
           S   G   +A    ++    + + G+   V LG+    + +IP          +++L I 
Sbjct: 240 SYIRGQLTVAFAVAIMFMIGFSVIGLDYAVTLGIAAGFLNLIPYLGSFLAMIPAVFLGIV 299

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
                   + +  AIE  +  + + P ++G  + +  +     L+   +  G++G+ +G 
Sbjct: 300 SGPALLIKVLIVFAIEQTVEGRFISPLVLGSQLSIHPVTILVVLLTSGKLFGIVGVILGI 359

Query: 333 VLMALIAVIWKESIMAIK 350
            + A   VI        +
Sbjct: 360 PVYAAAKVIITHIFEWYQ 377


>gi|255975043|ref|ZP_05425629.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|307285552|ref|ZP_07565691.1| hypothetical protein HMPREF9515_02935 [Enterococcus faecalis
           TX0860]
 gi|255967915|gb|EET98537.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|306502776|gb|EFM72041.1| hypothetical protein HMPREF9515_02935 [Enterococcus faecalis
           TX0860]
          Length = 394

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 109/318 (34%), Gaps = 5/318 (1%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           PV+ A I+ +   PI      K+          + + +  L +  L++     + +++E 
Sbjct: 65  PVIMAGILYYLLNPIVDYLEKKQISRVW-----SIIGLFILIVALLIWGGIVIVPKIREQ 119

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
               V      I      S           + + L       + S   +  N   F  + 
Sbjct: 120 SVSFVNHFPQYIDTIDQKSQEILSDPLFAQFREQLEAAGDKVVSSLGTIIKNVSTFTVQG 179

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
              F        ++II M   LF+  +DG +++  L             K+   V   + 
Sbjct: 180 IGNFFGAVATIFVAIITMPFILFYLLKDGKNLAPYLMKFLPVKMRKPTLKVLAEVNHQVS 239

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
           S   G   +A    ++    + + G+   V LG+    + +IP          +++L I 
Sbjct: 240 SYIRGQLTVAFAVAIMFMIGFSVIGLDYAVTLGIAAGFLNLIPYLGSFLAMIPAVFLGIV 299

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
                   + +  AIE  +  + + P ++G  + +  +     L+   +  G++G+ +G 
Sbjct: 300 SGPALLIKVLIVFAIEQTVEGRFISPLVLGSQLSIHPVTILVVLLTSGKLFGIVGVILGI 359

Query: 333 VLMALIAVIWKESIMAIK 350
            + A   VI        +
Sbjct: 360 PVYAAAKVIITHIFEWYQ 377


>gi|322372071|ref|ZP_08046613.1| permease [Haladaptatus paucihalophilus DX253]
 gi|320548493|gb|EFW90165.1| permease [Haladaptatus paucihalophilus DX253]
          Length = 408

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 60/339 (17%), Positives = 126/339 (37%), Gaps = 27/339 (7%)

Query: 3   ETMLNPQGIMRWMIMFII-LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +   N + +  W+I  ++ L+  + L  +   ++  L + + + PIY     + +   + 
Sbjct: 4   DPTQNRERVAWWLIFGVLGLIIAFILYSYVGTIVLGLFVYYATRPIYRRLSHRIQPR-SL 62

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A +A   +    I+ + +  + G+ ++ EL    +   Q+   +  +L  I G     +
Sbjct: 63  AAGLALGVLAFPGILLIAYTVFVGIQQLSELAG--IDLRQYESSLGPYLQTILGQQNPQD 120

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              + LS+PQ L      +L       +   A  +        + +   +I  F+  RD 
Sbjct: 121 AINQILSNPQQLT----QYLNPQTASGVVTSAGGYLGAAASGLIHVFIALIIAFYLLRDD 176

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA----- 236
             ++    S       A    ++  V   + + + G  + A    +V    Y        
Sbjct: 177 QKLAGWFSSQISGENSATHAYLTE-VDTDLETIYFGNILNAFVVAIVAAITYTALDSIAP 235

Query: 237 ---GVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLI-------KGNIFNATCLFLWG 285
              G+P+ V LG++T + ++IP  G  I +  + +YL         +   F    L +  
Sbjct: 236 PEVGIPAAVLLGLLTGLGSLIPVVGMKIVYVPIGLYLAGRSLVTAPQSIWFPIVFLLVAA 295

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            I   + +  LRP++ G    L      F  + G    G
Sbjct: 296 VIVDGVTELLLRPYISGR--NLHVGLVLFAYILGPLLFG 332


>gi|294619528|ref|ZP_06698965.1| domain of unknown function, putative [Enterococcus faecium E1679]
 gi|314939645|ref|ZP_07846870.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
 gi|314943988|ref|ZP_07850689.1| conserved hypothetical protein [Enterococcus faecium TX0133C]
 gi|314953874|ref|ZP_07856737.1| conserved hypothetical protein [Enterococcus faecium TX0133A]
 gi|314993533|ref|ZP_07858889.1| conserved hypothetical protein [Enterococcus faecium TX0133B]
 gi|314997046|ref|ZP_07862036.1| conserved hypothetical protein [Enterococcus faecium TX0133a01]
 gi|291594219|gb|EFF25656.1| domain of unknown function, putative [Enterococcus faecium E1679]
 gi|313588817|gb|EFR67662.1| conserved hypothetical protein [Enterococcus faecium TX0133a01]
 gi|313591970|gb|EFR70815.1| conserved hypothetical protein [Enterococcus faecium TX0133B]
 gi|313594209|gb|EFR73054.1| conserved hypothetical protein [Enterococcus faecium TX0133A]
 gi|313597412|gb|EFR76257.1| conserved hypothetical protein [Enterococcus faecium TX0133C]
 gi|313641054|gb|EFS05634.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
          Length = 424

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/332 (16%), Positives = 121/332 (36%), Gaps = 10/332 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +     P+L ALI+ +   P+          S     +I  V ++ L  +  ++L  + 
Sbjct: 81  IIATILPPLLFALILYYLLEPVIKRLSKHL--SRNLSVIIVYVIILFLLGLGSVWLVPFL 138

Query: 86  MLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
             + K L+S +  L       + ++L   P     ++ +         +      + ++ 
Sbjct: 139 EEQAKTLISSLPDLFQDFQESLRQFLEKTPFADSFNQFFASIDDVTSDIAGFIGNYWESG 198

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
                 +  S          +++    I  FF  RD     Q + ++    F   +K ++
Sbjct: 199 -----AQRISNIFSTVTAIFITLFTGPIVAFFLLRDPQKFYQSVLAIVPPAFRTDFKNLT 253

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
           +I  + + S   G  I +   G V    + L G+     L +   ++ +IP  G  I+F 
Sbjct: 254 KIANQQLGSFLKGQIIASFILGAVYWVCFLLIGLEFASVLAISAGLLCIIPYIGPFIAFF 313

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
              I             + +W A++L   D  + P ++G  +++  +     L+     M
Sbjct: 314 PGLIIAFQDSTFMAVKFVIVWFAVQLLHGDLVI-PRVMGDRLQIHPITILIVLLVMGDLM 372

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G++G+  G  +  L+ ++        K+   K
Sbjct: 373 GIVGVIFGIPIYTLVKLLVTFIFRKFKQRYNK 404


>gi|312864862|ref|ZP_07725093.1| putative membrane protein [Streptococcus downei F0415]
 gi|311099989|gb|EFQ58202.1| putative membrane protein [Streptococcus downei F0415]
          Length = 388

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/357 (15%), Positives = 128/357 (35%), Gaps = 10/357 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFL----------KGFFAPVLSALIIGFTSWPIYSSFISK 54
           +++ + +   +I+ +  ++LY L           GF   ++  ++I    + +    ++ 
Sbjct: 17  VVDNRFVSSLVILILTFLALYLLTRISFIFTALAGFLTVIMLPIVISVLLYYLLKPIVNF 76

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
            E+      V+A   V  + +  L++        ++E +   +    H I       +  
Sbjct: 77  VEKHLPINRVMAISLVYLVIVGLLIWGGASFFPMLQEQIMSFINNLPHYIKSVERQVNQV 136

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                 E     L    +           N    I  +A  F        ++II M   +
Sbjct: 137 IADNRFEAIRPQLEDWVNNYSSKAIGYAENFSKNIVSWAGDFASAVTRVAIAIIMMPFIV 196

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           F+  RD   +   +       +     +I   V    +    G   +AI  G++    + 
Sbjct: 197 FYLLRDSDKLKGSILKTFPVKWRKPLSRILSDVNTQWQGYVQGQVTVAIVVGIMFSILFS 256

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           L  +   VALG++  ++ +IP          +I L +    +    + +  A+E  I  +
Sbjct: 257 LIDLRYAVALGILAGVLNLIPYLGSFLAMLPAIILGLVAGPWMLIKVLIVFAVEQTIEGR 316

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            + P ++G  + +  +   F L+      G+ G+ +G  + + + V+ KE     ++
Sbjct: 317 FVSPLVLGTKLSIHPIMILFILLASGSVFGVWGVLLGIPVYSALKVVVKEIFDWYRD 373


>gi|229158199|ref|ZP_04286266.1| Sporulation integral membrane protein YtvI [Bacillus cereus ATCC
           4342]
 gi|228625157|gb|EEK81917.1| Sporulation integral membrane protein YtvI [Bacillus cereus ATCC
           4342]
          Length = 344

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/331 (16%), Positives = 119/331 (35%), Gaps = 12/331 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           + G   P + A    +   P+ +    K +       +++ + V    +  + +L    +
Sbjct: 1   MSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLILVFGAIVGLVTYLVTEAI 60

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
                L+  V +     +   +  +         +L +K     +  +      ++  G 
Sbjct: 61  SATTYLLQLVTVKFPDIVAFAQQFALNHIMPLYDDLISKFNHLGEPQRYTITQNIQNLGT 120

Query: 147 DF----------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           +           I    + F          ++F+++A FF   D   ++Q++     +  
Sbjct: 121 EATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFISYDWHRLAQKVRKFLPNRV 180

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
             Y K I   + K +         +     +++     +  VP  + + +IT ++ ++P 
Sbjct: 181 HGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRVPYAITIAIITGVVDLLPY 240

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G    F    IY+   G+   A  L +   + + +  + + P ++   I L  L T   
Sbjct: 241 LGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVI-VQRQIMEPKVLSSNIGLDPLATLIA 299

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           L  G +  G LGL IGPV + L+  + K  +
Sbjct: 300 LFVGFKLFGFLGLIIGPVTLVLLNTLHKARV 330


>gi|306833219|ref|ZP_07466348.1| membrane protein [Streptococcus bovis ATCC 700338]
 gi|304424586|gb|EFM27723.1| membrane protein [Streptococcus bovis ATCC 700338]
          Length = 395

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 72/361 (19%), Positives = 138/361 (38%), Gaps = 21/361 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLY--------------FLKGFFAPVLSALIIGFTSWPIYSSF 51
           LN Q ++  +I F++ ++LY              F+     P++ + I+ +   P+   F
Sbjct: 19  LNNQAVVAVLITFLVFLTLYLFTKISFLFTPIISFIAIIMLPLVISAILYYLIKPL-VGF 77

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS 111
           I K+  S T    I    ++ L I  +         ++   V  +    +          
Sbjct: 78  IEKRGVSRTTSIFIVFAIIIALLIWAVASFIPTIQEQLTSFVENLPSYVRSINVEANKFL 137

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
           + P      E   + LS+  +  I        N ID+   FAS    +     ++II   
Sbjct: 138 ESPWLANYQEELEEMLSNVSTKAIDYAESFSKNAIDWASNFASAIARVT----VAIIMSP 193

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
             LF+F RD   + + L             ++   + K +     G   +AI  G++   
Sbjct: 194 FILFYFLRDSGKMKEGLLKTLPTRMRRPISRVLGDINKQLAGYVQGQVTVAIVVGIIFTI 253

Query: 232 AYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
            + + G+      G+I   + MIP  G+ ++   V I  +++G I     + +   IE  
Sbjct: 254 FFNIIGLRYAATFGIIAGFLNMIPYLGSFLAMVPVVIMGVVQGPIML-IKVLIAFVIEQT 312

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           I  + + P ++G  + +  +   F L+      G+ G+F+G  + A I V+ KE     K
Sbjct: 313 IEGRFVSPLVLGSKLSIHPITIMFILLTSGAMFGVWGVFLGIPIYASIKVVVKEIFEWYK 372

Query: 351 E 351
            
Sbjct: 373 R 373


>gi|257420008|ref|ZP_05597002.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257161836|gb|EEU91796.1| conserved hypothetical protein [Enterococcus faecalis T11]
          Length = 394

 Score = 98.4 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 109/318 (34%), Gaps = 5/318 (1%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           PV+ A I+ +   PI      K+          + + +  L +  L++     + +++E 
Sbjct: 65  PVIMAGILYYLLNPIVDYLEKKQISRVW-----SIIGLFILIVALLIWGGIVIVPKIREQ 119

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
               V      I      S           + + L       + S   +  N   F  + 
Sbjct: 120 SVSFVNHFPQYIDTIDQKSQEILSDPLFAQFREQLEAAGDKVVSSLGTIIKNVSTFTVQG 179

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
              F        ++II M   LF+  +DG +++  L             K+   V   + 
Sbjct: 180 IGNFFGAVATIFVAIITMPFILFYLLKDGKNLAPYLMKFLPVKMRKPTLKVLAEVNDQVA 239

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
           S   G   +A    ++    + + G+   V LG+    + +IP          +++L I 
Sbjct: 240 SYIRGQLTVAFAVAIMFMIGFSVIGLDYAVTLGIAAGFLNLIPYLGSFLAMIPAVFLGIV 299

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
                   + +  AIE  +  + + P ++G  + +  +     L+   +  G++G+ +G 
Sbjct: 300 SGPALLIKVLIVFAIEQTVEGRFISPLVLGSQLSIHPVTILVVLLTSGKLFGIVGVILGI 359

Query: 333 VLMALIAVIWKESIMAIK 350
            + A   VI        +
Sbjct: 360 PVYAAAKVIITHIFEWYQ 377


>gi|269202981|ref|YP_003282250.1| hypothetical protein SAAV_1339 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|262075271|gb|ACY11244.1| hypothetical protein SAAV_1339 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269940856|emb|CBI49238.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|283470573|emb|CAQ49784.1| membrane protein YubA [Staphylococcus aureus subsp. aureus ST398]
 gi|298694658|gb|ADI97880.1| probable membrane protein [Staphylococcus aureus subsp. aureus
           ED133]
 gi|312829754|emb|CBX34596.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|323441143|gb|EGA98850.1| hypothetical protein SAO11_0210 [Staphylococcus aureus O11]
 gi|323444011|gb|EGB01622.1| hypothetical protein SAO46_0121 [Staphylococcus aureus O46]
 gi|329314036|gb|AEB88449.1| Membrane protein YubA [Staphylococcus aureus subsp. aureus T0131]
 gi|329727689|gb|EGG64145.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           21172]
 gi|329730893|gb|EGG67269.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           21189]
 gi|329733547|gb|EGG69875.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           21193]
          Length = 382

 Score = 98.4 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 61/358 (17%), Positives = 139/358 (38%), Gaps = 16/358 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFF-------APVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           ++  +++FI     Y    F        AP++ +LI+ +   PI +     +      ++
Sbjct: 17  VLLGIVIFIFEKVSYVFDPFIIVFKTIAAPIIVSLILFYLFNPIVNMMERYRIPRVAGIS 76

Query: 64  V--IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           +  +A V V+ L +  L+ +    +       S V  + Q+   +   +  I    + S 
Sbjct: 77  IIYLAVVGVITLIVNLLIPIIGSQVD------SLVKNSPQYLEKLINSIDKIANNTFFSS 130

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            +++      SL     + L      F  + A+ F     +  + I+     LFF  +DG
Sbjct: 131 YYSQINDWLNSLPKKIPSMLSEFTDGFGSKIAT-FAETIANIGVVIVTTPFVLFFMLKDG 189

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               +   ++    F   +  +   +   + S   G  I++   G++L   Y + G+   
Sbjct: 190 HHFKEFSTNIMPPKFRKDFHDLLEKMSVQVGSYIQGQIIVSFCIGILLFIGYSVIGLKYS 249

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           + L  I A+ +++P   P    + +I +    + +    L +   +  F+    + P ++
Sbjct: 250 LVLASIAAVTSVVPYLGPTIAISPAIVIAAITSPWMLLKLAVVWTLVQFVEGHFISPNIM 309

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G  +K+  L   F L+   + +G++G+ +G    A++ V+        K    +   N
Sbjct: 310 GKTLKIHPLTIIFILLCAGKLLGIVGVILGIPGYAILKVLVTHLFQLFKRRYNRFYGN 367


>gi|292491790|ref|YP_003527229.1| hypothetical protein Nhal_1718 [Nitrosococcus halophilus Nc4]
 gi|291580385|gb|ADE14842.1| protein of unknown function UPF0118 [Nitrosococcus halophilus Nc4]
          Length = 377

 Score = 98.4 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/300 (16%), Positives = 103/300 (34%), Gaps = 9/300 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P ++ + + +   P+      K   S T    + TV  +   IV LL L      ++ 
Sbjct: 28  LLPFVAGIAVAYLIDPLCDRLEDK-GWSRTVATSLVTVGFILAVIVVLLLLVPLLRNQIM 86

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L+  +              S  P      E W+  +S  ++        + +  +  + 
Sbjct: 87  HLIEVLPSLIARVQD-----STWPWLQTLQERWSVDISQLETTAREQAGTVVSWIVQALG 141

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
           +  S  G+   +    I    +  F+  RD  ++  ++D L    +    ++  +++ +V
Sbjct: 142 KLLSS-GLALANLLSLIFITPVVAFYLLRDWNNLVARVDDLLPRKYAPVIREQVKLIDRV 200

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           +     G   + +  G        L G+   + +G+   +++ IP    I      I L 
Sbjct: 201 LSGFIRGQASVCLLLGTFYAVGLTLIGLDFGLMVGMSAGLLSFIPYVGTIIGFIAGIGLA 260

Query: 271 IKGNIFNATCLFLWGAIELFIV--DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
                       + G   +  +     L P LVG  + L  +   F L+ G    G LG+
Sbjct: 261 FVQFSEWTPIALVAGVFVVGQILEGNFLTPRLVGTRVGLHPVMVIFALLAGGALFGFLGI 320


>gi|238061336|ref|ZP_04606045.1| hypothetical protein MCAG_02302 [Micromonospora sp. ATCC 39149]
 gi|237883147|gb|EEP71975.1| hypothetical protein MCAG_02302 [Micromonospora sp. ATCC 39149]
          Length = 459

 Score = 98.4 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 117/337 (34%), Gaps = 18/337 (5%)

Query: 13  RWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           R +++ ++  +L      +     P+  A+++     P     +  +    +    +  V
Sbjct: 115 RLIVIGVVFWALLKVVATISIVIIPLAVAMLLSALLAPAVGWLLRARFPR-SLATAVVLV 173

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +   +  L  +    +  + EL  K   +++    +  WL   P  +  S+L      
Sbjct: 174 GGLAAVVGTLTLVVNEFIQGVPELSKK---SSEGVRQIQDWLKTGPLHLSDSQLDRYIEE 230

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
            P  +   +E F            A        +    I+ ++ A FFF RDG  I + L
Sbjct: 231 APTWINNNTERFTSG---------AVSTAATLAEVLTGIVLVLFATFFFLRDGNRIWRFL 281

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L             R   + + +      ++A  + + +G+   +  +P    L  + 
Sbjct: 282 VRLLPVAARWKVDDAGRASWETLGAYVRATVLVAFIDAVGIGTFLVIFDIPFAFPLAALV 341

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A IP  GA +S     +  L+      A  +         +    L+P ++G  + +
Sbjct: 342 FLGAFIPIVGAALSGGVAVLVALVDSGPVTALIILGVVIGVQQVEGHVLQPLIMGRAVAI 401

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L    G+  GV   G+ G  +   L+A++    + 
Sbjct: 402 HPLAVIIGIAAGVVLAGITGALVSVPLIAVLNTAVRR 438


>gi|69244433|ref|ZP_00602849.1| Protein of unknown function UPF0118 [Enterococcus faecium DO]
 gi|293559545|ref|ZP_06676080.1| hypothetical protein EfmE1162_0235 [Enterococcus faecium E1162]
 gi|293570139|ref|ZP_06681218.1| hypothetical protein EfmE1071_2681 [Enterococcus faecium E1071]
 gi|314948604|ref|ZP_07851980.1| conserved hypothetical protein [Enterococcus faecium TX0082]
 gi|68196374|gb|EAN10802.1| Protein of unknown function UPF0118 [Enterococcus faecium DO]
 gi|291587338|gb|EFF19223.1| hypothetical protein EfmE1071_2681 [Enterococcus faecium E1071]
 gi|291606497|gb|EFF35896.1| hypothetical protein EfmE1162_0235 [Enterococcus faecium E1162]
 gi|313644981|gb|EFS09561.1| conserved hypothetical protein [Enterococcus faecium TX0082]
          Length = 424

 Score = 98.4 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/332 (16%), Positives = 121/332 (36%), Gaps = 10/332 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +     P+L ALI+ +   P+          S     +I  V ++ L  +  ++L  + 
Sbjct: 81  IIATILPPLLFALILYYLLEPVIKRLSKHL--SRNLSVIIVYVIILFLLGLGSIWLIPFL 138

Query: 86  MLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
             + K L+S +  L       + ++L   P     ++ +         +      + ++ 
Sbjct: 139 EEQAKTLISSLPDLFQDFQESLRQFLEKTPFADSFNQFFASIDDVTSDIAGFIGNYWESG 198

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
                 +  S          +++    I  FF  RD     Q + ++    F   +K ++
Sbjct: 199 -----AQRISNIFSTVTAIFITLFTGPIVAFFLLRDPQKFYQSVLAIVPPAFRTDFKNLT 253

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
           +I  + + S   G  I +   G V    + L G+     L +   ++ +IP  G  I+F 
Sbjct: 254 KIANQQLGSFLKGQIIASFILGAVYWVCFLLIGLEFASVLAISAGLLCIIPYIGPFIAFF 313

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
              I             + +W A++L   D  + P ++G  +++  +     L+     M
Sbjct: 314 PGLIIAFQDSTFMAVKFVIVWFAVQLLHGDLVI-PRVMGDRLQIHPITILIVLLVMGDLM 372

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G++G+  G  +  L+ ++        K+   K
Sbjct: 373 GIVGVIFGIPIYTLVKLLVTFIFRKFKQRYNK 404


>gi|294623323|ref|ZP_06702184.1| hypothetical protein EfmU0317_2584 [Enterococcus faecium U0317]
 gi|291597258|gb|EFF28448.1| hypothetical protein EfmU0317_2584 [Enterococcus faecium U0317]
          Length = 424

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/332 (16%), Positives = 121/332 (36%), Gaps = 10/332 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +     P+L ALI+ +   P+          S     +I  V ++ L  +  ++L  + 
Sbjct: 81  IIATILPPLLFALILYYLLEPVIKRLSKHL--SRNLSVIIVYVIILFLLGLGSIWLIPFL 138

Query: 86  MLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
             + K L+S +  L       + ++L   P     ++ +         +      + ++ 
Sbjct: 139 EEQAKTLISSLPDLFQDFQESLRQFLEKTPFADSFNQFFASIDDVTSDIAGFIGNYWESG 198

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
                 +  S          +++    I  FF  RD     Q + ++    F   +K ++
Sbjct: 199 -----AQRISNIFSTVTAIFITLFTGPIVAFFLLRDPQKFYQSVLAIVPPAFRTDFKNLT 253

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
           +I  + + S   G  I +   G V    + L G+     L +   ++ +IP  G  I+F 
Sbjct: 254 KIANQQLGSFLKGQIIASFILGAVYWVCFLLIGLEFASVLAISAGLLCIIPYIGPFIAFF 313

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
              I             + +W A++L   D  + P ++G  +++  +     L+     M
Sbjct: 314 PGLIIAFQDSTFMAVKFVIVWFAVQLLHGDLVI-PRVMGDRLQIHPITILIVLLVMGDLM 372

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G++G+  G  +  L+ ++        K+   K
Sbjct: 373 GIVGVIFGIPIYTLVKLLVTFIFRKFKQRYNK 404


>gi|229076099|ref|ZP_04209067.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock4-18]
 gi|229099057|ref|ZP_04229991.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock3-29]
 gi|229118087|ref|ZP_04247446.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock1-3]
 gi|228665310|gb|EEL20793.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock1-3]
 gi|228684285|gb|EEL38229.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock3-29]
 gi|228706962|gb|EEL59167.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock4-18]
          Length = 346

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/331 (16%), Positives = 118/331 (35%), Gaps = 12/331 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           + G   P + A    +   P+ +    K +       +++ + V    +  + +L    +
Sbjct: 1   MSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLILVFGAIVGLVTYLVTEAI 60

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
                L+  V +     +      +         +L +K     +  +      ++  G 
Sbjct: 61  SATTYLLQLVTVKFPDIVKFAEQFALNHIMPLYDDLISKFNHLGEPQRYTITQNIQNLGT 120

Query: 147 D----------FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           +           I    + F          ++F+++A FF   D   ++Q+   L  +  
Sbjct: 121 EATTQMKELLTAIISGLTNFISALPTTLTVLVFILLATFFISYDWHRLAQKARKLLPNRV 180

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
             Y K I   + K +         +     +++     +  VP  + + +IT ++ ++P 
Sbjct: 181 HGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRVPYAITIAIITGVVDLLPY 240

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G    F    IY+   G+   A  L +   + + +  + + P ++   I L  L T   
Sbjct: 241 LGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVI-VQRQIMEPKVLSSNIGLDPLATLVA 299

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           L  G +  G LGL IGPV + L+  + K  +
Sbjct: 300 LFIGFKLFGFLGLIIGPVTLVLLNTLHKAHV 330


>gi|269928592|ref|YP_003320913.1| hypothetical protein Sthe_2677 [Sphaerobacter thermophilus DSM
           20745]
 gi|269787949|gb|ACZ40091.1| protein of unknown function UPF0118 [Sphaerobacter thermophilus DSM
           20745]
          Length = 468

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/337 (14%), Positives = 113/337 (33%), Gaps = 17/337 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +     P + A +  +   P+ +               +  V +  +  V  + +     
Sbjct: 31  VAHILPPFVWAAVTAYLLHPVVNRVQRGLRIPRPVAIAMVFVLIAGILGVVGVRVVPTLY 90

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            +++ L++ +                I  G               ++    E   K    
Sbjct: 91  EQLRSLIASLPSLIDTARQELVRNERISIGGV--------TIDTAAINAQIEEVSKDVAA 142

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
            F  R A    +  + + + ++  ++A ++F   G  + Q+L +L        ++++S  
Sbjct: 143 RF-SREAPSLVLQTVGFLIHLLVYLLATYYFLLQGSRLVQRLSNLLPPRHHQTFERVSGQ 201

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           V     +      I+     +    A  +  V   +AL + T  + +IP   P +   ++
Sbjct: 202 VNATFGAYIRAQVILFAIMSVATFIALSILKVQYALALAIATGALELIPIIGPWTAGGIA 261

Query: 267 IYLLIKGNIFN--------ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           + + +              A  + L       + D  + P LVG  ++L  L   FG++ 
Sbjct: 262 VTVALSQGSTPFGWTPVQLAAVVGLTYLALRLMEDHFVIPQLVGRIVRLHPLMVIFGVLA 321

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G    G LGL +   L+A   +I    +  ++    +
Sbjct: 322 GASIGGALGLVLAVPLLAASKLIVLAVLEELRHPPAR 358


>gi|261406702|ref|YP_003242943.1| hypothetical protein GYMC10_2865 [Paenibacillus sp. Y412MC10]
 gi|261283165|gb|ACX65136.1| protein of unknown function UPF0118 [Paenibacillus sp. Y412MC10]
          Length = 379

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/327 (14%), Positives = 121/327 (37%), Gaps = 5/327 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +K    P++ + I+ +   P+      +K +   +  +I  + +  +  V +L +    
Sbjct: 50  LIKTIVLPIILSGILYYLLNPLVDMLERRKIKR-GWSILILYLLIAGILTVVVLAVIPVL 108

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++  L+      ++        L+    G        + ++        + T   T  
Sbjct: 109 RTQIMSLIDNFPTYSEKVRQQFEELT----GSQLYSQLQEAVNINSQEWWGTITQKATEI 164

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           ++        F   F +  LSII +   LF+  +DG  + +++ S       +    + +
Sbjct: 165 LNSTWSKVGGFLGAFTEIVLSIITVPFVLFYMLKDGKKLPRKILSYLPTQSRSGILHVLQ 224

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   I S   G  I+++  G++L   Y + G+   + L +I +  +++P   P      
Sbjct: 225 DINHQISSFIRGQIIVSVCIGILLYIGYMIIGLDYALILAIIASFTSVVPYLGPAIAITP 284

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +      +     I   I  K + P ++G  +K+  +   F ++      G+
Sbjct: 285 ALIVALVTSPVMLLKMVAVWTIVQLIEGKFISPQIMGKTLKIHPITIIFVILTAGNLFGV 344

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKEN 352
           +G+ +     A++ V         K  
Sbjct: 345 VGILLAVPGYAVLKVCVTHIFEWFKNT 371


>gi|257080808|ref|ZP_05575169.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|256988838|gb|EEU76140.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
          Length = 394

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/334 (16%), Positives = 111/334 (33%), Gaps = 6/334 (1%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
                    PVL  +I+ +   P+      K      +   I  V ++ L ++  L LF 
Sbjct: 45  FVIFSAVLGPVLFGIILFYLLNPMVKRLEKKIP--RVWAIAILYVLIIALLVLAGLQLFP 102

Query: 84  YGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
               + +EL+ +           V  +++  P                  L    + F  
Sbjct: 103 IIQDQTEELIKQFPSFWKSTLQAVQEFMAKTPFAKDLESANESINQLWGKLANSFKDFAG 162

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            + +    +             L++    I  FF  +D     + +  +    F   + +
Sbjct: 163 -DYLQTGAQGLGSVFSAVSSTFLTLFTGPIIAFFLLKDKEKFYRFVKGIIPPAFRPDFDE 221

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
            S+I    I     G  I ++  G++    + L G+     L +   I+ +IP  G  I+
Sbjct: 222 YSQIANIQIGDYLKGQVIASLVLGIMYWPTFLLIGLQFGSILALAAGILCIIPYIGPFIA 281

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F    I             + +W AI+L   D  + P ++G  +K+  +     L+    
Sbjct: 282 FIPGLIIAFQDSTFMVVKFVIVWFAIQLIHGDFVI-PRVMGDKLKVHPITILLVLLVMGE 340

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             GL+G+  G  +  L+ V         K+   +
Sbjct: 341 LFGLMGVIFGIPMYCLVKVTVIYLFRKFKQRYNR 374


>gi|329578114|gb|EGG59526.1| hypothetical protein HMPREF9520_00101 [Enterococcus faecalis
           TX1467]
          Length = 394

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 108/318 (33%), Gaps = 5/318 (1%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           PV+ A I+ +   PI      K+          + + +  L +  L++     + +++E 
Sbjct: 65  PVIMAGILYYLLNPIVDYLEKKQISRVW-----SIIGLFILIVALLIWGGIVIVPKIREQ 119

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
               V      I      S           + + L       + S   +  N   F  + 
Sbjct: 120 SVSFVNHFPQYIDTIDQKSQEILSDPLFAQFREQLEAAGDKVVSSLGTIIKNVSTFTVQG 179

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
              F        ++ I M   LF+  +DG +++  L             K+   V   + 
Sbjct: 180 IGNFFGAVATIFVATITMPFILFYLLKDGKNLAPYLMKFLPVKMRKPTLKVLAEVNDQVS 239

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
           S   G   +A    ++    + + G+   V LG+    + +IP          +++L I 
Sbjct: 240 SYIRGQLTVAFAVAIMFMIGFSVIGLDYAVTLGIAAGFLNLIPYLGSFLAMIPAVFLGIV 299

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
                   + +  AIE  +  + + P ++G  + +  +     L+   +  G++G+ +G 
Sbjct: 300 SGPALLIKVLIVFAIEQTVEGRFISPLVLGSQLSIHPVTILVVLLTSGKLFGIVGVILGI 359

Query: 333 VLMALIAVIWKESIMAIK 350
            + A   VI        +
Sbjct: 360 PVYAAAKVIITHIFEWYQ 377


>gi|73662707|ref|YP_301488.1| putative permease [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495222|dbj|BAE18543.1| putative permease [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 408

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/355 (15%), Positives = 128/355 (36%), Gaps = 15/355 (4%)

Query: 11  IMRWMIMFIILVS---LYFLKGFF-------APVLSALIIGFTSWPIYSSFISKKEESST 60
           IM  +I   I +     Y  K F        AP++ ++I+ +   P+ +  + +   S  
Sbjct: 41  IMLILIGIAIFIFDQVSYIFKPFIIVFNTIVAPIIVSIILYYLFNPLVN-LMERYNISRL 99

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +  +I  + ++ +  + +  L      + K   +           V +++ ++      S
Sbjct: 100 WGVIILFLVIIGVIALAINLLIPVIGTQFKSFGNNFPHYVDK---VNQFIDNLTRNSLIS 156

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             + +      +L     + +      F       F    ++  + I      LFF  +D
Sbjct: 157 NFYGQIQEQLDALANKLPSMVSDYFNGF-GSKVKNFAEAIVNVGVVIATTPFVLFFMLKD 215

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                +    L    F   +  +   +   + S   G  I++   G++L   Y + G+  
Sbjct: 216 SHHFKEYSTKLMPPKFRKDYHDLLDKMSVQVGSYIQGQIIVSFCIGILLFIGYSIIGLDY 275

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + L  I A+ +++P   P    + +I + +  +      L +      FI    + P +
Sbjct: 276 SLILASIAAVTSVVPYLGPTIAISPAIIIALITSPIMLLKLIIVWTAVQFIEGHFISPNI 335

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G  +K+  L   F L+     +G++G+ +G    A++ V+        K    K
Sbjct: 336 MGKTLKIHPLTIIFILLSAGNLLGVVGVILGIPAYAILKVLVSHLYSMYKRRYNK 390


>gi|229548324|ref|ZP_04437049.1| permease [Enterococcus faecalis ATCC 29200]
 gi|256959606|ref|ZP_05563777.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|293384273|ref|ZP_06630161.1| putative membrane protein [Enterococcus faecalis R712]
 gi|293386996|ref|ZP_06631564.1| putative membrane protein [Enterococcus faecalis S613]
 gi|307288769|ref|ZP_07568747.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0109]
 gi|312906294|ref|ZP_07765305.1| putative ATP synthase F0, A subunit [Enterococcus faecalis DAPTO
           512]
 gi|312909640|ref|ZP_07768494.1| putative ATP synthase F0, A subunit [Enterococcus faecalis DAPTO
           516]
 gi|229306540|gb|EEN72536.1| permease [Enterococcus faecalis ATCC 29200]
 gi|256950102|gb|EEU66734.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|291078421|gb|EFE15785.1| putative membrane protein [Enterococcus faecalis R712]
 gi|291083538|gb|EFE20501.1| putative membrane protein [Enterococcus faecalis S613]
 gi|306500238|gb|EFM69577.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0109]
 gi|310627669|gb|EFQ10952.1| putative ATP synthase F0, A subunit [Enterococcus faecalis DAPTO
           512]
 gi|311290042|gb|EFQ68598.1| putative ATP synthase F0, A subunit [Enterococcus faecalis DAPTO
           516]
 gi|315166095|gb|EFU10112.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX1302]
          Length = 394

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/334 (16%), Positives = 114/334 (34%), Gaps = 6/334 (1%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
                    PV+  +I+ +   P+      K      +   I  V ++ L ++  L LF 
Sbjct: 45  FVIFSAVLGPVIFGIILFYLLNPMVKRLEKKIP--RVWAIAILYVLIIALLVLVGLQLFP 102

Query: 84  YGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
               + +EL+ +     +  +  V  +++  P                  L    + F  
Sbjct: 103 IIQDQTEELIKQFPSFWKSTLQTVQEFMAKTPFAKDLESANESINQLWGKLANSFKDFAG 162

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            + +    +             L++    I  FF  +D     + +  +    F   + +
Sbjct: 163 -DYLQTGAQGLGSVFSAVSSTFLTLFTGPIIAFFLLKDKEKFYRFVKGIIPPAFRPDFDE 221

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
            S+I    I     G  I ++  G++   A+ L G+     L +   I+ +IP  G  I+
Sbjct: 222 YSQIANIQIGDYLKGQVIASLVLGIMYWPAFLLIGLQFGSILALAAGILCIIPYIGPFIA 281

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F    I             + +W AI+L   D  + P ++G  +K+  +     L+    
Sbjct: 282 FIPGLIIAFQDSTFMVVKFVIVWFAIQLIHGDFVI-PRVMGDKLKVHPITILLVLLVMGE 340

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             GL+G+  G  +  L+ V         K+   +
Sbjct: 341 LFGLMGVIFGIPMYCLVKVTVIYLFRKFKQRYNR 374


>gi|229122455|ref|ZP_04251668.1| hypothetical protein bcere0016_27500 [Bacillus cereus 95/8201]
 gi|228661016|gb|EEL16643.1| hypothetical protein bcere0016_27500 [Bacillus cereus 95/8201]
          Length = 306

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 113/297 (38%), Gaps = 4/297 (1%)

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                ++  + ++ L  V +  +      ++ +LV  +    + G     ++ D+     
Sbjct: 12  RNLAILLLYLFIITLTAVGVGVVVPTISQQLMDLVKNMPGYIKEG---KVYIQDLSHHRL 68

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
              L T++    ++++  +  +LK +  + +   A+    I  +  L I  +   LF+ +
Sbjct: 69  FEWLSTQNYVSIETIEKNAIEYLK-DIPNTLTSSATALFGIITNVALVIFTVPFILFYMF 127

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +DG +   +  SL    +     +I +   + + +   G  ++ I  G      Y++  +
Sbjct: 128 KDGHAFPGKAVSLLPESYREEGLRIIKETNETLSAYIQGQALVCIFVGAFTFIGYFIIDL 187

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P    LG+I A   +IP   P    A ++ + +  +   A  + +   I        + P
Sbjct: 188 PYAFVLGIIAAFTNIIPNLGPFIGAAPAVIVGLFVSPMQALYVIIIVTIVQQFESNIISP 247

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            ++   + +  L     ++G     G++G+ +   + A+   +    +   K  +  
Sbjct: 248 RIMSSKLNIHPLTIIILILGVGNFAGIIGMILAVPVYAVTKTVVSNLVRLFKTKRSN 304


>gi|18977478|ref|NP_578835.1| hypothetical protein PF1106 [Pyrococcus furiosus DSM 3638]
 gi|18893179|gb|AAL81230.1| hypothetical protein PF1106 [Pyrococcus furiosus DSM 3638]
          Length = 326

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 137/346 (39%), Gaps = 34/346 (9%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M +         + +ILVSL  +K FF+    A +  +   P+++    +  E  + L +
Sbjct: 1   MRSSIVFGALGAVILILVSL-TVKPFFSSFFFAFVTAYVLSPLHTKLSGRFGERQSALLL 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           I  +    + ++ +L      +L    +  + + +     P+P+ +SD   G++      
Sbjct: 60  IFVLLAGAVVLMIILIYTLNPVLNQAYVYLQDIDSLISRAPLPKSISDAFLGIYH----- 114

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                                   +  +   F      Y L +   +  +++F       
Sbjct: 115 -------------------QLAPRVQEYILSFTFSIPKYILQVAAYLAFVYYFLLH---- 151

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV---PSH 241
            + +  L         KKI       +++      ++ I +G+++   + +  V   P+ 
Sbjct: 152 EKDIAKLIPFESDEKMKKILYRGNLTLQALIKAWLLLNIAKGILMTIGFIIFDVSSLPTA 211

Query: 242 VALGVITAIMAMIPGG-APISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPF 299
           +  G++T + + IP     + + A SIYLL  G+   A  L  +GA  +  + D T+RP 
Sbjct: 212 ILAGIVTILFSFIPLFEGWMVWLAGSIYLLNSGHFIRAILLAAYGAALVSPLPDFTIRPK 271

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +V    K        G++GGV  MGL GL IGP+++ +   + +E 
Sbjct: 272 IVAKEAKFDETLVLIGMIGGVWAMGLKGLIIGPIVLNVAVEMLREW 317


>gi|75762049|ref|ZP_00741959.1| Hypothetical membrane spanning protein [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218899750|ref|YP_002448161.1| sporulation integral membrane protein YtvI [Bacillus cereus G9842]
 gi|74490456|gb|EAO53762.1| Hypothetical membrane spanning protein [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218541741|gb|ACK94135.1| sporulation integral membrane protein YtvI [Bacillus cereus G9842]
          Length = 372

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/347 (16%), Positives = 124/347 (35%), Gaps = 15/347 (4%)

Query: 14  WMIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
             ++   +   Y L    G   P + A    +   P+ +    K +       +++ + V
Sbjct: 13  IFVIVATIAGFYVLLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLILV 72

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
               +  + +L    +     L+  V +     +   +  +         +L +K     
Sbjct: 73  FGAIVGLVTYLVTEAISATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNHLG 132

Query: 131 QSLKILSETFLKTNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +  +      ++  G +           I    + F          ++F+++A FF   D
Sbjct: 133 EPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFILLATFFISYD 192

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              ++Q+   L  +    Y K I   + K +         +     +++     +  VP 
Sbjct: 193 WHRLAQKTRKLLPNRVHGYGKTIFVDLKKALFGFVKAQLTLVSMTTVIVLIGLLILRVPY 252

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            + + +IT ++ ++P  G    F    IY+   G+   A  L +   + + +  + + P 
Sbjct: 253 AITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVI-VQRQIMEPK 311

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           ++   I L  L T   L  G +  G LGL IGPV + L+  + K ++
Sbjct: 312 VLSSNIGLDPLATLVALFVGFKLFGFLGLIIGPVTLVLLNTLHKANV 358


>gi|229175304|ref|ZP_04302819.1| Sporulation integral membrane protein YtvI [Bacillus cereus MM3]
 gi|228608136|gb|EEK65443.1| Sporulation integral membrane protein YtvI [Bacillus cereus MM3]
          Length = 365

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/335 (16%), Positives = 122/335 (36%), Gaps = 12/335 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           +L ++ G   P + A    +   P+ +    K +       +++ + V    +  + +L 
Sbjct: 18  ALLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLILVFGAIVGLVTYLV 77

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              +     L+  V +     +      +         +L +K     +  +      ++
Sbjct: 78  TEAISATTYLLQLVTVKFPDIVKFAEQFALNHIMPLYDDLISKFNHLGEPQRYTITQNIQ 137

Query: 143 TNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             G +           I    + F          ++F+++A FF   D   ++Q++    
Sbjct: 138 NLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFISYDWHRLAQKVRKFL 197

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            +    Y K I   + K +         +     +++     +  VP  + + +IT ++ 
Sbjct: 198 PNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRVPYAITIAIITGVVD 257

Query: 253 MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++P  G    F    IY+   G+   A  L +   + + +  + + P ++   I L  L 
Sbjct: 258 LLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVI-VQRQIMEPKVLSSNIGLDPLA 316

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           T   L  G +  G LGL IGPV++ L+  + K  +
Sbjct: 317 TLIALFVGFKLFGFLGLIIGPVILVLLNTLHKARV 351


>gi|222151264|ref|YP_002560420.1| hypothetical protein MCCL_1017 [Macrococcus caseolyticus JCSC5402]
 gi|222120389|dbj|BAH17724.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 380

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 61/342 (17%), Positives = 128/342 (37%), Gaps = 20/342 (5%)

Query: 11  IMRWMIMFIILVSLYFLKGFFA-------PVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           I+  +++ I+    +  K F         PV+ A I+ +   P+ +  + +   +  +  
Sbjct: 25  ILTGILVLIVNQISFIFKPFIVIFNTVIGPVILAFILYYLLNPLVN-LMERYRINRLWGI 83

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD----IPGGMWA 119
           +I   +++ LF + + +L     +++  LV        H +     LS+     P     
Sbjct: 84  IILIATIISLFALLITWLIPVIEVQVTGLVHNAPDYLNHLLKDFNRLSNDSKFAPFLQNI 143

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            E    +LS    L      +L                       + I+     LFF  +
Sbjct: 144 QEWVNTNLSD---LPKKVGEYLGN-----FSTRLRSVVDTVASVAIVIMTFPFVLFFLLK 195

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG      +  L    F      I   +   + S   G   +A   G++L   Y + G+ 
Sbjct: 196 DGEQFKNYVLKLTPPKFRKDLHDILDKMNVQVGSYIQGQMFVAFCIGVLLFIGYMIIGLE 255

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             + L  I A+ +++P   P+   + +I + +  + F    L +      F+    + P 
Sbjct: 256 YALILACIAAVTSVVPYLGPMIAISPAIIIALVDSPFMLLKLAIVWMAVQFLEGHFISPN 315

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++G  +++  L   F L+     +GL+G+ +G  L A++ V+
Sbjct: 316 IMGKTMQIHPLTIIFVLLCAGNLLGLIGVILGIPLYAILKVL 357


>gi|256853913|ref|ZP_05559278.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256710856|gb|EEU25899.1| conserved hypothetical protein [Enterococcus faecalis T8]
          Length = 389

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 109/318 (34%), Gaps = 5/318 (1%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           PV+ A I+ +   PI      K+          + + +  L +  L++     + +++E 
Sbjct: 60  PVIMAGILYYLLNPIVDYLEKKQISRVW-----SIIGLFILIVALLIWGGIVIVPKIREQ 114

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
               V      I      S           + + L       + S   +  N   F  + 
Sbjct: 115 SVSFVNHFPQYIDTIDQKSQEILSDPLFAQFREQLEAAGDKVVSSLGTIIKNVSTFTVQG 174

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
              F        ++II M   LF+  +DG +++  L             K+   V   + 
Sbjct: 175 IGNFFGAVATIFVAIITMPFILFYLLKDGKNLAPYLIKFLPVKMRKPTLKVLAEVNDQVS 234

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
           S   G   +A    ++    + + G+   V LG+    + +IP          +++L I 
Sbjct: 235 SYIRGQLTVAFAVAIMFMIGFSVIGLDYAVTLGIAAGFLNLIPYLGSFLAMIPAVFLGIV 294

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
                   + +  AIE  +  + + P ++G  + +  +     L+   +  G++G+ +G 
Sbjct: 295 SGPALLIKVLIVFAIEQTVEGRFISPLVLGSQLSIHPVTILVVLLTSGKLFGIVGVILGI 354

Query: 333 VLMALIAVIWKESIMAIK 350
            + A   VI        +
Sbjct: 355 PVYAAAKVIITHIFEWYQ 372


>gi|49478696|ref|YP_038640.1| permease [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|52140913|ref|YP_085916.1| permease [Bacillus cereus E33L]
 gi|118479743|ref|YP_896894.1| permease [Bacillus thuringiensis str. Al Hakam]
 gi|196040923|ref|ZP_03108221.1| sporulation integral membrane protein YtvI [Bacillus cereus
           NVH0597-99]
 gi|196047486|ref|ZP_03114697.1| sporulation integral membrane protein YtvI [Bacillus cereus
           03BB108]
 gi|225866573|ref|YP_002751951.1| sporulation integral membrane protein YtvI [Bacillus cereus
           03BB102]
 gi|49330252|gb|AAT60898.1| conserved hypothetical protein, possible permease [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51974382|gb|AAU15932.1| conserved hypothetical protein; possible permease [Bacillus cereus
           E33L]
 gi|118418968|gb|ABK87387.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|196021701|gb|EDX60397.1| sporulation integral membrane protein YtvI [Bacillus cereus
           03BB108]
 gi|196028377|gb|EDX66986.1| sporulation integral membrane protein YtvI [Bacillus cereus
           NVH0597-99]
 gi|225789224|gb|ACO29441.1| sporulation integral membrane protein YtvI [Bacillus cereus
           03BB102]
          Length = 372

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/335 (16%), Positives = 122/335 (36%), Gaps = 12/335 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           +L ++ G   P + A    +   P+ +    K +       +++ + V    +  + +L 
Sbjct: 25  ALLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLILVFGAIVGLVTYLV 84

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              +     L+  V +     +   +  +         +L +K     +  +      ++
Sbjct: 85  TEAISATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNHLGEPQRYTITQNIQ 144

Query: 143 TNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             G +           I    + F          ++F+++A FF   D   ++Q++    
Sbjct: 145 NLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFISYDWHRLAQKVRKFL 204

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            +    Y K I   + K +         +     +++     +  VP  + + +IT ++ 
Sbjct: 205 PNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRVPYAITIAIITGVVD 264

Query: 253 MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++P  G    F    IY+   G+   A  L +   + + +  + + P ++   I L  L 
Sbjct: 265 LLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVI-VQRQIMEPKVLSSNIGLDPLA 323

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           T   L  G +  G LGL IGPV + L+  + K  +
Sbjct: 324 TLIALFVGFKLFGFLGLIIGPVTLVLLNTLHKARV 358


>gi|237785193|ref|YP_002905898.1| hypothetical protein ckrop_0588 [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758105|gb|ACR17355.1| putative membrane protein [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 453

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/314 (15%), Positives = 104/314 (33%), Gaps = 14/314 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             PV+ ++I+    WP        K   +   A++  +    + I  L  +    + + +
Sbjct: 92  LLPVMISIIVCTLLWPPVHWLTKHKVPHA-LSAIVVILGAAVIVIGTLSLVTTSVIDQSE 150

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L  +   + +        L+  P  +  ++L          ++  S + + +       
Sbjct: 151 SLAHRASHSLRET---KEALNGPPLNIKDAQLNQALDQAAAHIQEHSGSLVSSVLSGASA 207

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
             +            ++  +++  FFF  DG      +D         +  +I     K 
Sbjct: 208 ASSVAV---------TLGIVLMLTFFFLNDGHKFLPWIDRQFSGSIGTHLHEIFARSWKT 258

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
           +        II+    + +     +  VP  +AL V+      IP  GA ++     +  
Sbjct: 259 LGGFIRAQAIISFLNSVFIAIGLSILHVPLALALAVLNFFCGFIPIFGALVAGAVAVVIA 318

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            +     +A    L   +   I    L P L    + L  +     +  G    G++G F
Sbjct: 319 FVANGWISALLTALLILLVHQIEGNVLSPILQSRAMNLHPVIILASVAIGGSVYGVVGAF 378

Query: 330 IGPVLMALIAVIWK 343
           +   L A+ AV+ +
Sbjct: 379 LAVPLAAVGAVLLR 392


>gi|167630331|ref|YP_001680830.1| hypothetical protein HM1_2263 [Heliobacterium modesticaldum Ice1]
 gi|167593071|gb|ABZ84819.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1]
          Length = 360

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/320 (16%), Positives = 114/320 (35%), Gaps = 3/320 (0%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +  P L   +I     P+      K   S      +  +  + L  V L+ +    ++EM
Sbjct: 38  YLLPFLLGAMIALLIEPVVEFLTKKTGLSRGLTTFVTLLLFLGLVSVSLVVIISRLVVEM 97

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             + S +            W   +           +  +  + +       +K   +   
Sbjct: 98  VTIASSLPSPQFLTNAFTEWTKAVAPYYELIHSSPEIYTTVERIAGEGVVAVKNMAVSG- 156

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
             +          +   + F ++A +FF RD  +I Q +  +         +++   + +
Sbjct: 157 SNYLLDMITSLPSFFTILAFSLVASYFFSRDKGAILQLVYKVVPDDRAVQVRQVIVELGE 216

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIY 268
                     I+    GL+     +L        +G++T IM ++P  G  + F    I+
Sbjct: 217 AFVGFVRAQVILVSITGLLTIIGLYLLDNEYAFTIGILTGIMDLLPILGPGLVFLPWIIW 276

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
            L+ G    A  L +   I + +  + + P +V   I L  L T   L  G++  G++G+
Sbjct: 277 ELLSGQFPAAANLSILYGILV-LNRQFIEPKVVADSIGLHPLVTLTALYVGLKAFGVIGV 335

Query: 329 FIGPVLMALIAVIWKESIMA 348
            IGP ++ L+  + +  +  
Sbjct: 336 IIGPTIVLLLLSMHRAGVFK 355


>gi|206977140|ref|ZP_03238039.1| sporulation integral membrane protein YtvI [Bacillus cereus
           H3081.97]
 gi|217962076|ref|YP_002340646.1| sporulation integral membrane protein YtvI [Bacillus cereus AH187]
 gi|206744625|gb|EDZ56033.1| sporulation integral membrane protein YtvI [Bacillus cereus
           H3081.97]
 gi|217064824|gb|ACJ79074.1| sporulation integral membrane protein YtvI [Bacillus cereus AH187]
 gi|324328488|gb|ADY23748.1| sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 372

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/335 (16%), Positives = 122/335 (36%), Gaps = 12/335 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           +L ++ G   P + A    +   P+ +    K +       +++ + V    +  + +L 
Sbjct: 25  ALLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLILVFGAIVGLVTYLV 84

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              +     L+  V +     +   +  +         +L +K     +  +      ++
Sbjct: 85  TEAISATTYLLQLVTVKFPDIVAFAQQFALNHIMPLYDDLISKFNHLGEPQRYTITQNIQ 144

Query: 143 TNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             G +           I    + F          ++F+++A FF   D   ++Q++    
Sbjct: 145 NLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFISYDWHRLAQKVRKFL 204

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            +    Y K I   + K +         +     +++     +  VP  + + +IT ++ 
Sbjct: 205 PNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRVPYAITIAIITGVVD 264

Query: 253 MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++P  G    F    IY+   G+   A  L +   + + +  + + P ++   I L  L 
Sbjct: 265 LLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVI-VQRQIMEPKVLSSNIGLDPLA 323

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           T   L  G +  G LGL IGPV + L+  + K  +
Sbjct: 324 TLIALFVGFKLFGFLGLIIGPVTLVLLNTLHKARV 358


>gi|262368618|ref|ZP_06061947.1| PerM family permease [Acinetobacter johnsonii SH046]
 gi|262316296|gb|EEY97334.1| PerM family permease [Acinetobacter johnsonii SH046]
          Length = 406

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/354 (14%), Positives = 130/354 (36%), Gaps = 9/354 (2%)

Query: 6   LNPQGIMRWMIMF---IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  + + R  I+    +IL  LY LK    P + A ++ +   P+      K        
Sbjct: 1   MQDRTLKRIFILAGIALILWVLYLLKPVVLPFIGAFLVAYLFSPLVDKL-HKIGLPRWLS 59

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                + +  +  +   +L      ++  + +K  + +       ++L  +        +
Sbjct: 60  ISAVFIGIGVVITLAFWYLVPLVWEQL--MYAKNSIPSGIHWANYKFLPWLSDSFNLVPM 117

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    ++    +T    + I  +    ++ G+ F+    +++ + I  F+F  D  
Sbjct: 118 ELDVDQISAAIMEYVQTNYSADSIQAMIAKLAQSGLNFIQIGGTVVLIPIIAFYFLLDWD 177

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +      L    +      I +    V+ +   G  ++ +  G+V      L G+   +
Sbjct: 178 RMLDSFRRLIPRRYEEQTLVIVKECHSVLGAFVKGQFLVMVLLGVVYAMGLQLIGLEVGL 237

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIY--LLIKG-NIFNATCLFLWGAIELFIVDKTLRPF 299
            +G++  + ++IP          ++   L   G +      + +   I   +    L+PF
Sbjct: 238 IIGMVAGLCSIIPYLGFAVGIIAAVIASLFQFGIDWMQLLLVGVVFMIGQAVEGYILQPF 297

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L+G  I L  +   F ++ G +  G+LG+ I   + A+I V+ + +    + + 
Sbjct: 298 LLGDKIGLSPVAVVFAVLAGAQLGGILGMLIALPVAAVIVVLLRHAREFYENSP 351


>gi|326942380|gb|AEA18276.1| hypothetical protein CT43_CH4616 [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 372

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/347 (16%), Positives = 124/347 (35%), Gaps = 15/347 (4%)

Query: 14  WMIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
             ++   +   Y L    G   P + A    +   P+ +    K +       +++ + V
Sbjct: 13  IFVIVATVAGFYVLLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLILV 72

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
               +  + +L    +     L+  V +     +   +  +         +L +K     
Sbjct: 73  FGAIVGLVTYLVTEAISATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNHLG 132

Query: 131 QSLKILSETFLKTNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +  +      ++  G +           I    + F          ++F+++A FF   D
Sbjct: 133 EPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFILLATFFISYD 192

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              ++Q+   L  +    Y K I   + K +         +     +++     +  VP 
Sbjct: 193 WHRLAQKTRKLLPNRVHGYGKTIFVDLKKALFGFVKAQLTLVSMTTVIVLIGLLILRVPY 252

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            + + +IT ++ ++P  G    F    IY+   G+   A  L +   + + +  + + P 
Sbjct: 253 AITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVI-VQRQIMEPK 311

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           ++   I L  L T   L  G +  G LGL IGPV + L+  + K ++
Sbjct: 312 VLSSNIGLDPLATLVALFVGFKLFGFLGLIIGPVTLVLLNTLHKANV 358


>gi|229005363|ref|ZP_04163077.1| hypothetical protein bmyco0002_23000 [Bacillus mycoides Rock1-4]
 gi|228755893|gb|EEM05224.1| hypothetical protein bmyco0002_23000 [Bacillus mycoides Rock1-4]
          Length = 348

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/330 (15%), Positives = 124/330 (37%), Gaps = 5/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P+L A+ + F   P+     +KK    +   ++  V ++ L  V +  +    
Sbjct: 22  FISTLFFPILIAMFLYFIFNPVLVFLEAKKVPR-SLAILLLYVFIITLAAVAIGVVVPTI 80

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +LV  +    + G     ++ ++        L T+     ++++  +  +LK   
Sbjct: 81  SQQLMDLVKNMPTYIKEG---KVYIQELSHHRLFEWLATQDYVSIETIEKNAIEYLKE-I 136

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + I   A+    I  +  L +  +   LF+ ++DG +   +  S     +     +I +
Sbjct: 137 PNTITSSATALFGIITNVALVVFTVPFILFYMFKDGHAFPGKAVSFLPESYREEGLRIIK 196

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              + + +   G  ++ +  G      Y +  +P    LG+I A   +IP   P    A 
Sbjct: 197 ETGETLSAYIQGQALVCLFVGAFTFIGYVIMDLPYAFVLGIIAAFTNIIPNLGPFIGAAP 256

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A  + +   I        + P ++   + +  L     ++G     G+
Sbjct: 257 AVIVGLFVSPMQALWVIVIVTIVQQFESNIISPRIMSSKLNIHPLTIIVLILGVGNFAGI 316

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G+ +     A+   +    +   K  +  
Sbjct: 317 IGMILAVPAYAVTKTVVSNLVRLFKMKRNN 346


>gi|29377087|ref|NP_816241.1| hypothetical protein EF2602 [Enterococcus faecalis V583]
 gi|257421813|ref|ZP_05598803.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|294781398|ref|ZP_06746740.1| membrane family protein [Enterococcus faecalis PC1.1]
 gi|300860994|ref|ZP_07107081.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
 gi|29344553|gb|AAO82311.1| conserved hypothetical protein [Enterococcus faecalis V583]
 gi|257163637|gb|EEU93597.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|294451525|gb|EFG19985.1| membrane family protein [Enterococcus faecalis PC1.1]
 gi|295113582|emb|CBL32219.1| Predicted permease [Enterococcus sp. 7L76]
 gi|300850033|gb|EFK77783.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
          Length = 389

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 109/318 (34%), Gaps = 5/318 (1%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           PV+ A I+ +   PI      K+          + + +  L +  L++     + +++E 
Sbjct: 60  PVIMAGILYYLLNPIVDYLEKKQISRVW-----SIIGLFILIVALLIWGGIVIVPKIREQ 114

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
               V      I      S           + + L       + S   +  N   F  + 
Sbjct: 115 SVSFVNHFPQYIDTIDQKSQEILSDPLFAQFREQLEAAGDKVVSSLGTIIKNVSTFTVQG 174

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
              F        ++II M   LF+  +DG +++  L             K+   V   + 
Sbjct: 175 IGNFFGAVATIFVAIITMPFILFYLLKDGKNLAPYLMKFLPVKMRKPTLKVLAEVNDQVS 234

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
           S   G   +A    ++    + + G+   V LG+    + +IP          +++L I 
Sbjct: 235 SYIRGQLTVAFAVAIMFMIGFSVIGLDYAVTLGIAAGFLNLIPYLGSFLAMIPAVFLGIV 294

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
                   + +  AIE  +  + + P ++G  + +  +     L+   +  G++G+ +G 
Sbjct: 295 SGPALLIKVLIVFAIEQTVEGRFISPLVLGSQLSIHPVTILVVLLTSGKLFGIVGVILGI 354

Query: 333 VLMALIAVIWKESIMAIK 350
            + A   VI        +
Sbjct: 355 PVYAAAKVIITHIFEWYQ 372


>gi|163791064|ref|ZP_02185485.1| hypothetical protein CAT7_12140 [Carnobacterium sp. AT7]
 gi|159873709|gb|EDP67792.1| hypothetical protein CAT7_12140 [Carnobacterium sp. AT7]
          Length = 393

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/332 (16%), Positives = 117/332 (35%), Gaps = 9/332 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
                 AP++ A I+ +   PI      + +    +      V+++ + +  +   F   
Sbjct: 46  IFSTLIAPLILAFILYYLLNPIVDWLE-RYKIKRIWGVTFLFVAIIGILVGLVALAFPPI 104

Query: 86  MLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
             ++  LV+      +  G  V  W+   P    AS+L         ++  +   +  T 
Sbjct: 105 QDQVTSLVNNFPSYVDTIGTTVLGWVEGTPLENSASDLVEWLNGWVSNIPSVVVDYFDTA 164

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
                    +       +  + I+   I  FF  +D       +  +    F    K I 
Sbjct: 165 VNGL-----TNIFSTVSNVVVVIVTFPIIAFFLLKDDEKFFSYVIKIISPKFRKDIKNIF 219

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
             +   + S   G  +I++  G+++   + + G+     L ++    ++IP  GA ++  
Sbjct: 220 ATINDQVGSYIKGQLMISLSLGIMMFIGFTIIGLEYAGVLAIVATFTSIIPYVGAALAMI 279

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
              I  L   +      L +  A+  FI    + P ++G  + +  L     L+     +
Sbjct: 280 PAIIIALTT-SWVMVLKLLIVWAVVQFIDGNLVEPNIMGKNLNVHPLTIIIVLLVLGDLL 338

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G +GL +G  + A+  VI        K+   K
Sbjct: 339 GFVGLVLGVPIYAISRVIATFVFRKFKQRYNK 370


>gi|167750104|ref|ZP_02422231.1| hypothetical protein EUBSIR_01073 [Eubacterium siraeum DSM 15702]
 gi|167656847|gb|EDS00977.1| hypothetical protein EUBSIR_01073 [Eubacterium siraeum DSM 15702]
          Length = 468

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/304 (18%), Positives = 102/304 (33%), Gaps = 4/304 (1%)

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGM 117
                 I  +  + +    +  L    +  +  LV+ +     Q    V + L + P   
Sbjct: 108 RVMSVAITMILALLILTGIIWVLLPQLIDTITMLVNNMPTYVTQVSDWVSQTLRNYPEVE 167

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGID-FIPRFASRFGMIFLDYCLSIIFMIIALFF 176
                +T  +S   +  + +E   + N I   I         +F++  L  +  I  L  
Sbjct: 168 AYVLQFTGGISDMLNNWLSTELLPQMNNIWNLISSNVMNIISVFMNLLLGFVIAIYFLNS 227

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
                    + L  L +          +R V K       G  + +   G+V      + 
Sbjct: 228 KELFAAQFKKILYCLFKPKVATKIINSTREVNKSFGQFITGKILDSFIIGMVYVLLMSIF 287

Query: 237 GVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
            +P  V  GV+  I  +IP  G  I F    + L++  +        +   I   I    
Sbjct: 288 NMPYAVLCGVVMGIFCIIPYFGPFIGFIPCMLLLVLV-DPIQCIYFTIMVVIIQNIDGNV 346

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L P ++G    L      FG++ G    G +GL IG  L A++    K  +    E K+ 
Sbjct: 347 LAPKIIGDSTGLSSFWVIFGMLVGQGLFGFVGLIIGIPLFAVVYSFTKNRVKKRLEKKDL 406

Query: 356 ISSN 359
            S +
Sbjct: 407 PSDS 410


>gi|229105224|ref|ZP_04235873.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock3-28]
 gi|228678150|gb|EEL32378.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock3-28]
          Length = 367

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/347 (16%), Positives = 122/347 (35%), Gaps = 15/347 (4%)

Query: 14  WMIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
             ++   +   Y L    G   P + A    +   P+ +    K +       +++ + V
Sbjct: 6   IFVIVATVAGFYVLLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLILV 65

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
               +  + +L    +     L+  V +     +      +         +L +K     
Sbjct: 66  FGAIVGLVTYLVTEAISATTYLLQLVTVKFPDIVKFAEQFALNHIMPLYDDLISKFNHLG 125

Query: 131 QSLKILSETFLKTNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +  +      ++  G +           I    + F          ++F+++A FF   D
Sbjct: 126 EPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFILLATFFISYD 185

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              ++Q+   L  +    Y K I   + K +         +     +++     +  VP 
Sbjct: 186 WHRLAQKARKLLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRVPY 245

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            + + +IT ++ ++P  G    F    IY+   G+   A  L +   + + +  + + P 
Sbjct: 246 AITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVI-VQRQIMEPK 304

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           ++   I L  L T   L  G +  G LGL IGPV + L+  + K  +
Sbjct: 305 VLSSNIGLDPLATLVALFIGFKLFGFLGLIIGPVTLVLLNTLHKAHV 351


>gi|170685913|ref|ZP_02877136.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0465]
 gi|196033171|ref|ZP_03100584.1| sporulation integral membrane protein YtvI [Bacillus cereus W]
 gi|218905823|ref|YP_002453657.1| sporulation integral membrane protein YtvI [Bacillus cereus AH820]
 gi|254687404|ref|ZP_05151260.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724967|ref|ZP_05186750.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A1055]
 gi|170670377|gb|EDT21117.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0465]
 gi|195994600|gb|EDX58555.1| sporulation integral membrane protein YtvI [Bacillus cereus W]
 gi|218535804|gb|ACK88202.1| sporulation integral membrane protein YtvI [Bacillus cereus AH820]
          Length = 372

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/335 (16%), Positives = 122/335 (36%), Gaps = 12/335 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           +L ++ G   P + A    +   P+ +    K +       +++ + V    +  + +L 
Sbjct: 25  ALLYVSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLILVFGAIVGLVTYLV 84

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              +     L+  V +     +   +  +         +L +K     +  +      ++
Sbjct: 85  TEAISATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNHLGEPQRYTITQNIQ 144

Query: 143 TNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             G +           I    + F          ++F+++A FF   D   ++Q++    
Sbjct: 145 NLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFISYDWHRLAQKVRKFL 204

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            +    Y K I   + K +         +     +++     +  VP  + + +IT ++ 
Sbjct: 205 PNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRVPYAITIAIITGVVD 264

Query: 253 MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++P  G    F    IY+   G+   A  L +   + + +  + + P ++   I L  L 
Sbjct: 265 LLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVI-VQRQIMEPKVLSSNIGLDPLA 323

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           T   L  G +  G LGL IGPV + L+  + K  +
Sbjct: 324 TLIALFVGFKLFGFLGLIIGPVTLVLLNTLHKARV 358


>gi|323353414|ref|ZP_08087947.1| permease [Streptococcus sanguinis VMC66]
 gi|322121360|gb|EFX93123.1| permease [Streptococcus sanguinis VMC66]
          Length = 365

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 65/344 (18%), Positives = 123/344 (35%), Gaps = 17/344 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS---TFLAVIATVSVMCLFIV 76
           I   L  L   F+P++   ++ F             ++          +A +  + +  +
Sbjct: 27  IWSGLQSLTSVFSPIILGGVLAFIFNVPMKKLEDFLDKCRVPQKLQRGLALILEVLILAL 86

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            +  +    +  +   V+++        P V +WL     G+ +S          Q+   
Sbjct: 87  IMTGIVSIVVPTLTTAVNQLSETIGKVAPQVAKWLQQ--SGLLSSSQLKDLTKQLQNSD- 143

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                +    I  +         IF ++  S+I  I  +F F      +      L + L
Sbjct: 144 -----IVNRAISLLGSLTGNISAIFGNFF-SVIMSIFLMFAFLSSKEHLQTITSRLLQVL 197

Query: 196 FPAYWKKISRIVPKVIRST----FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
            P    K    V  VI  T     +G  I A+  G+++  AY L G+P     GV+  ++
Sbjct: 198 LPEKAVKRLSYVGSVIVETYDKFLMGQMIEAVIVGILVFIAYSLTGLPYAALTGVLAGVL 257

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           + IP   P S  A+    +   + + A            I    + P +VG  + LP L 
Sbjct: 258 SFIPYIGPFSACALGAIFIFTDSPWKALLSIAVFQGVQLIEGNVIYPRVVGQSVGLPTLF 317

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           T    + G    GL+G+     + A+I  + +E ++  +E  E 
Sbjct: 318 TLAAALIGGNLFGLVGMIFFTPIFAVIYRLVREFVVEKEERNES 361


>gi|323481538|gb|ADX80977.1| PerM family permease [Enterococcus faecalis 62]
          Length = 389

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 109/318 (34%), Gaps = 5/318 (1%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           PV+ A I+ +   PI      K+          + + +  L +  L++     + +++E 
Sbjct: 60  PVIMAGILYYLLNPIVDYLEKKQISRVW-----SIIGLFILIVALLIWGGIVIVPKIREQ 114

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
               V      I      S           + + L       + S   +  N   F  + 
Sbjct: 115 SVSFVNHFPQYIDTIDQKSQEILSDPLFAQFREQLEAAGDKVVSSLGTIIKNVSTFTVQG 174

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
              F        ++II M   LF+  +DG +++  L             K+   V   + 
Sbjct: 175 IGNFFGAVAMIFVAIITMPFILFYLLKDGKNLAPYLMKFLPVKMRKPTLKVLAEVNDQVS 234

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
           S   G   +A    ++    + + G+   V LG+    + +IP          +++L I 
Sbjct: 235 SYIRGQLTVAFAVAIMFMIGFSVIGLDYAVTLGIAAGFLNLIPYLGSFLAMIPAVFLGIV 294

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
                   + +  AIE  +  + + P ++G  + +  +     L+   +  G++G+ +G 
Sbjct: 295 SGPALLIKVLIVFAIEQTVEGRFISPLVLGSQLSIHPVTILVVLLTSGKLFGIVGVILGI 354

Query: 333 VLMALIAVIWKESIMAIK 350
            + A   VI        +
Sbjct: 355 PVYAAAKVIITHIFEWYQ 372


>gi|117164731|emb|CAJ88279.1| putative integral membrane protein [Streptomyces ambofaciens ATCC
           23877]
          Length = 363

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 122/327 (37%), Gaps = 14/327 (4%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           PV  AL++   +WP  + F+ +        A + TV+ +   +  +  +      +  EL
Sbjct: 47  PVAIALLLTTLTWP-SARFLRRHGWPPALAASVVTVAFLLTAVGVVALIAVPMSSQTDEL 105

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
              VV   +    +  W +  P  +  +++ +   +    ++    + + T         
Sbjct: 106 TDGVVEGIER---LRDWAAGPPLNIGDAQITSAVDTAMARVQDSVGSMVSTVATGV---- 158

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
                   ++  ++ I  +  +FFF +DG      L              ++    + + 
Sbjct: 159 -----SAVVNGLITAILAVFLMFFFLKDGPRFLPWLTRQLPGRLSTDVPAVAARGWETLG 213

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLI 271
           S      ++ + + + +G   W+ GVP  + L V+T + A +P  GA  +     +  L+
Sbjct: 214 SFVRSQALVGLLDAVFIGLGLWILGVPLVLPLAVLTFVSAFVPIVGALFAGFVAVLIALV 273

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
              + +A  +     +   +     +P +    + L        +  G    G++G  + 
Sbjct: 274 SNGLTDALIVLAIIVVVQQLEGNVFQPMIQSRGLGLHAAVILLAVTLGGSLAGVVGTLLA 333

Query: 332 PVLMALIAVIWKESIMAIKENKEKISS 358
             + ALIAV+W      + ++ E+ ++
Sbjct: 334 VPVAALIAVVWNYVRDQLGDHAEEPAA 360


>gi|30022672|ref|NP_834303.1| hypothetical protein BC4597 [Bacillus cereus ATCC 14579]
 gi|206969761|ref|ZP_03230715.1| sporulation integral membrane protein YtvI [Bacillus cereus AH1134]
 gi|218233703|ref|YP_002369392.1| sporulation integral membrane protein YtvI [Bacillus cereus B4264]
 gi|296505068|ref|YP_003666768.1| hypothetical protein BMB171_C4239 [Bacillus thuringiensis BMB171]
 gi|29898231|gb|AAP11504.1| hypothetical Membrane Spanning Protein [Bacillus cereus ATCC 14579]
 gi|206735449|gb|EDZ52617.1| sporulation integral membrane protein YtvI [Bacillus cereus AH1134]
 gi|218161660|gb|ACK61652.1| sporulation integral membrane protein YtvI [Bacillus cereus B4264]
 gi|296326120|gb|ADH09048.1| hypothetical protein BMB171_C4239 [Bacillus thuringiensis BMB171]
          Length = 372

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/347 (16%), Positives = 124/347 (35%), Gaps = 15/347 (4%)

Query: 14  WMIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
             ++   +   Y L    G   P + A    +   P+ +    K +       +++ + V
Sbjct: 13  IFVIVATVAGFYVLLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLILV 72

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
               +  + +L    +     L+  V +     +   +  +         +L +K     
Sbjct: 73  FGAIVGLVTYLVTEAISATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNHLG 132

Query: 131 QSLKILSETFLKTNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +  +      ++  G +           I    + F          ++F+++A FF   D
Sbjct: 133 EPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFILLATFFISYD 192

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              ++Q+   L  +    Y K I   + K +         +     +++     +  VP 
Sbjct: 193 WHRLAQKARKLLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRVPY 252

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            + + +IT ++ ++P  G    F    IY+   G+   A  L +   + + +  + + P 
Sbjct: 253 AITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVI-VQRQIMEPK 311

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           ++   I L  L T   L  G +  G LGL IGPV + L+  + K ++
Sbjct: 312 VLSSNIGLDPLATLVALFVGFKLFGFLGLIIGPVTLVLLNTLHKANV 358


>gi|227550549|ref|ZP_03980598.1| possible permease [Enterococcus faecium TX1330]
 gi|227180450|gb|EEI61422.1| possible permease [Enterococcus faecium TX1330]
          Length = 362

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 60/334 (17%), Positives = 115/334 (34%), Gaps = 7/334 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F    FAPVL A  + +   PI    + K +    +   I  + ++   I  LL +    
Sbjct: 30  FFSTLFAPVLIAGFLYYLLNPI-VKLLMKAKIKRIWAVAIVLLLLVAAIIWILLSVIPSL 88

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  L S +    +      + ++++P            ++       +S   +    
Sbjct: 89  VQQISSLASSMPDFIKQVESWLKEVAELPVFKEVD------INKYFEQLDISYGTIIQQF 142

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +               + II     LF+  +DG  +   +             ++  
Sbjct: 143 LSGVSNSLGSIVGTIASATVVIITAPFILFYMLKDGEKLVPNIQQFFPEKRRNQIVELLG 202

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K + +   G  I  +  G      Y + GV      GVI  +  +IP   P    A 
Sbjct: 203 QLNKTLANYISGQAIECLFVGTFTFLGYMIIGVDYAFLFGVIAGLTNLIPYLGPYLGLAP 262

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +  + I  +   A    L   I   +    + P ++G  +K+  L     L+      GL
Sbjct: 263 AFLVTIFNDPIKALLCCLVVLIVQQLDGNIIYPNVIGKSLKIHPLTIIIVLLVAGNIAGL 322

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           LG+F+G    A+   I    I  IKE+K+  +  
Sbjct: 323 LGIFLGVPFYAICKTIISYIIKIIKEDKQNENKK 356


>gi|326202550|ref|ZP_08192418.1| protein of unknown function UPF0118 [Clostridium papyrosolvens DSM
           2782]
 gi|325987134|gb|EGD47962.1| protein of unknown function UPF0118 [Clostridium papyrosolvens DSM
           2782]
          Length = 394

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/312 (18%), Positives = 110/312 (35%), Gaps = 20/312 (6%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+     P+L   ++ +   PI S     +        ++A V    + +  L+ L  Y 
Sbjct: 44  FVYSIIFPILFGGLLYYILRPIVSMLEKARVPH-----ILAIVLAFVIVLSALILLSSY- 97

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
                 ++          +PV    ++       S     + +          + +    
Sbjct: 98  ---TGSIIKSQFDDFAKSLPVLYKQAENTVNNLLSSNLLSYFNDSN----FQTSDIADKV 150

Query: 146 IDFIPRFASRFGMIFLDYCLSI-------IFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
            +F+   A   G   L +  +I       I + I LF+F +DG      +          
Sbjct: 151 SNFLQSLAKSVGKNTLSFIGAITNIGSVIIILPIILFYFLKDGNKFMPSVVRFLPASQKD 210

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             +KI   +  V+ +   G  ++A   GL++   Y + G+   + L +   I  +IP   
Sbjct: 211 NMRKILTDIDFVLSNYIAGQLLVAFFIGLLMYIGYLIIGLKYSLLLAIFAMITCIIPFFG 270

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P      +I L +  N F A  +FL   I   I +  + P ++   + +  L     L+G
Sbjct: 271 PWIGIVPAILLSLADNPFMAVKIFLVMTIVQQIDNNLISPQVMKKSMDIHPLTVILLLMG 330

Query: 319 GVRTMGLLGLFI 330
            +   G +GL I
Sbjct: 331 ILPIFGFVGLII 342


>gi|167633918|ref|ZP_02392241.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0442]
 gi|254741741|ref|ZP_05199428.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           Kruger B]
 gi|167530719|gb|EDR93421.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0442]
          Length = 372

 Score = 97.6 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/335 (16%), Positives = 122/335 (36%), Gaps = 12/335 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           +L ++ G   P + A    +   P+ +    K +       +++ + V    +  + +L 
Sbjct: 25  ALLYVSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLILVFGAIVGLVTYLV 84

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              +     L+  V +     +   +  +         +L +K     +  +      ++
Sbjct: 85  TEAISATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNHLGEPQRYTITQNIQ 144

Query: 143 TNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             G +           I    + F          ++F+++A FF   D   ++Q++    
Sbjct: 145 NLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFISYDWHRLAQKVRKFL 204

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            +    Y K I   + K +         +     +++     +  VP  + + +IT ++ 
Sbjct: 205 PNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRVPYAITIAIITGVID 264

Query: 253 MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++P  G    F    IY+   G+   A  L +   + + +  + + P ++   I L  L 
Sbjct: 265 LLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVI-VQRQIMEPKVLSSNIGLDPLA 323

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           T   L  G +  G LGL IGPV + L+  + K  +
Sbjct: 324 TLIALFVGFKLFGFLGLIIGPVTLVLLNTLHKARV 358


>gi|228991726|ref|ZP_04151666.1| hypothetical protein bpmyx0001_24740 [Bacillus pseudomycoides DSM
           12442]
 gi|228768049|gb|EEM16672.1| hypothetical protein bpmyx0001_24740 [Bacillus pseudomycoides DSM
           12442]
          Length = 357

 Score = 97.6 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/330 (15%), Positives = 124/330 (37%), Gaps = 5/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P+L A+ + F   P+     +KK    +   ++  V ++ L  V +  +    
Sbjct: 31  FISTLFFPILIAMFLYFIFNPVLVFLEAKKVPR-SLAILLLYVFIITLAAVAIGVVVPTI 89

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +LV  +    + G     ++ ++        L T+     ++++  +  +LK   
Sbjct: 90  SQQLMDLVKNMPTYIKEG---KVYIQELSHHRLFEWLATQDYVSIETIEKNAIEYLKE-I 145

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + I   A+    I  +  L +  +   LF+ ++DG +   +  S     +     +I +
Sbjct: 146 PNTITSSATALFGIITNVALVVFTVPFILFYMFKDGHAFPGKAVSFLPESYREEGLRIIK 205

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              + + +   G  ++ +  G      Y +  +P    LG+I A   +IP   P    A 
Sbjct: 206 ETGETLSAYIQGQALVCLFVGAFTFIGYVIMDLPYAFVLGIIAAFTNIIPNLGPFIGAAP 265

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A  + +   I        + P ++   + +  L     ++G     G+
Sbjct: 266 AVIVGLFVSPMQALWVIVIVTIVQQFESNIISPRIMSSKLNIHPLTIIVLILGVGNFAGI 325

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G+ +     A+   +    +   K  +  
Sbjct: 326 IGMILAVPAYAVTKTVVSNLVRLFKMKRNN 355


>gi|38234671|ref|NP_940438.1| putative integral membrane protein [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38200935|emb|CAE50652.1| Putative integral membrane protein [Corynebacterium diphtheriae]
          Length = 426

 Score = 97.6 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/338 (16%), Positives = 118/338 (34%), Gaps = 18/338 (5%)

Query: 11  IMRWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
            +R++I+ I  +  +     +     PV+ A+++    WP      SKK        VI 
Sbjct: 42  ALRFIIVAIASIMAWRGLGTVWHGVLPVILAILLSTVLWPPVRWLRSKKVP-PALAVVIV 100

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +    +       +      + K+LV +          +  W  + P  +  S++    
Sbjct: 101 ILGFFGIIGGIFAAMAPSVGAQSKDLVDRASDGINR---LLDWAENSPFDIDTSQIDGYL 157

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            +   +LK  S                           +++I M+I  FFF +DG     
Sbjct: 158 SNITNTLKEQSSNIANGVFTGL---------STASTILVTMILMLILSFFFLKDGTRFLP 208

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +  L       +  ++   +   +        I+++ + +++G    +  VP  + L V
Sbjct: 209 MVRRLTGPNVGWHLTEVLTRIWNTLAGFIRAQAIVSLVDAVLIGVGLLILKVPLALVLAV 268

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +T     IP  GA  +     +  L+   + NA  + +       I    L+P L    +
Sbjct: 269 LTFFGGFIPIVGAFTAGALAVVIALVSNGMSNALMVLVLIIAVQQIEGHILQPVLQSKAM 328

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L        +  G    G++G F+   + A +AV+ +
Sbjct: 329 NLHAAVVLLSVTVGSTLFGVIGAFLAVPVAATLAVLVR 366


>gi|228910420|ref|ZP_04074235.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           IBL 200]
 gi|228849186|gb|EEM94025.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           IBL 200]
          Length = 344

 Score = 97.6 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/331 (16%), Positives = 120/331 (36%), Gaps = 12/331 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           + G   P + A    +   P+ +    K +       +++ + V    +  + +L    +
Sbjct: 1   MSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLILVFGAIVGLVTYLVTEAI 60

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
                L+  V +     +   +  +         +L +K     +  +      ++  G 
Sbjct: 61  SATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNHLGEPQRYTITQNIQNLGT 120

Query: 147 D----------FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           +           I    + F          ++F+++A FF   D   ++Q+   L  +  
Sbjct: 121 EATTQMKELLTAIISGLTNFISALPTTLTVLVFILLATFFISYDWHRLAQKARKLLPNRV 180

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
             Y K I   + K +         +     +++     +  VP  + + +IT ++ ++P 
Sbjct: 181 HGYGKTIFVDLKKALFGFVKAQLTLVSMTTVIVLIGLLILRVPYAITIAIITGVVDLLPY 240

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G    F    IY+   G+   A  L +   + + +  + + P ++   I L  L T   
Sbjct: 241 LGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVI-VQRQIMEPKVLSSNIGLDPLATLVA 299

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           L  G +  G LGL IGPV + L+  + K ++
Sbjct: 300 LFVGFKLFGFLGLIIGPVTLVLLNTLHKANV 330


>gi|327468532|gb|EGF14011.1| permease [Streptococcus sanguinis SK330]
          Length = 364

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 65/347 (18%), Positives = 125/347 (36%), Gaps = 17/347 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS---TFLAVIATVSVMCLFIV 76
           I   L  L   F+P++   ++ F             ++          +A +  + +  +
Sbjct: 27  IWSGLQSLTSVFSPIILGGVLAFIFNVPMKKLEEFLDKCRVPQKLQRGLALILEVLILAL 86

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            +  +    +  +   V+++        P V +WL     G+ +S          Q+   
Sbjct: 87  IMTGIVSIVVPTLTTAVNQLSATIGKVAPQVAKWLQQ--SGLLSSSQLKDLTKQLQNSD- 143

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                +    I  +         IF ++  S+I  I  +F F      +      L + L
Sbjct: 144 -----IVNRAISLLGSLTGNISAIFGNFF-SVIMSIFLMFAFLSSKEHLQTITSRLLQVL 197

Query: 196 FPAYWKKISRIVPKVIRST----FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
            P    K    V  VI  T     +G  I A+  G+++  AY L G+P     GV+  ++
Sbjct: 198 LPEKAVKRLSYVGSVIVETYDKFLMGQMIEAVIVGILVFIAYSLTGLPYAALTGVLAGVL 257

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           + IP   P S  A+    +   + + A        +   I    + P +VG  + LP L 
Sbjct: 258 SFIPYIGPFSACALGAIFIFTDSPWKALLSIAVFQVVQLIEGNVIYPRVVGQSVGLPTLF 317

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           T    + G    GL+G+     + A+I  + +E ++  +E K  +  
Sbjct: 318 TLAAALIGGNLFGLVGMIFFTPIFAVIYRLVREFVVEKEEKKALVKE 364


>gi|81429080|ref|YP_396080.1| putative transport protein [Lactobacillus sakei subsp. sakei 23K]
 gi|78610722|emb|CAI55773.1| Putative transport protein [Lactobacillus sakei subsp. sakei 23K]
          Length = 368

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/316 (14%), Positives = 110/316 (34%), Gaps = 7/316 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P++ A ++ +   P+ +     K      +A+I  V    +  + +       
Sbjct: 40  FISTLFGPIIGAGLLFYLFNPLINLLGKLKISRKWAIAIIFIVFFGGIIFI-VALAIPQL 98

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++ ++V+ +         +   +S  P              +   L +      +   
Sbjct: 99  IHQVTQVVTNLPDYVHRLQDMIDKISTNPHLKNID-----VNKYVNQLDLKPSKIAENIM 153

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
             F   F S  G +     + +  + I LF+  +DG  +   +  +    +      + R
Sbjct: 154 KSFTSGFGSMIGAVT-SVTIGVFTVPIMLFYMLKDGHRLIPNIQKMLPDRYNDQVADLLR 212

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   I +   G  +  +  G+     Y + G+P    LG I  +  +IP   P    A 
Sbjct: 213 KMGATISAYIGGQALECLFVGVFTFIGYLIIGMPYAYLLGFIAGVSNIIPYLGPYIGIAP 272

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +I     + +   I   I    + P ++G  + +  L     L+      G+
Sbjct: 273 ALIISLSISIPKTIMVIVVVVIVQQIDGNLIYPNVIGRSLDIHPLTIIIILLVAGNIYGI 332

Query: 326 LGLFIGPVLMALIAVI 341
           LG+ +     A+   +
Sbjct: 333 LGMILAIPFYAVTKTV 348


>gi|325697596|gb|EGD39481.1| permease [Streptococcus sanguinis SK160]
          Length = 366

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 67/348 (19%), Positives = 127/348 (36%), Gaps = 17/348 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS---TFLAVIATVSVMCLFIV 76
           I   L  L   F+P++   ++ F             ++          +A V  + +  +
Sbjct: 27  IWSGLQSLTSVFSPIILGGVLAFIFNVPMKKLEDFLDKCRIPQKLQRGLALVLEVLILAL 86

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            +  +    +  +   V+++        P V +WL     G+ +S          Q+   
Sbjct: 87  IMTGIVSIVVPTLTTAVNQLSATIGKVAPQVAKWLQQ--SGLLSSSQLKDLTKQLQNSD- 143

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                +    I  +         IF ++  S+I  I  +F F      +      L + L
Sbjct: 144 -----IVNRAISLLGSLTGNISAIFGNFF-SVIMSIFLMFAFLSSKEHLQTITSRLLQVL 197

Query: 196 FPAYWKKISRIVPKVIRST----FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
            P    K    V  VI  T     +G  I A+  G+++  AY L G+P     GV+  ++
Sbjct: 198 LPEKAVKRLSYVGSVIVETYDKFLMGQMIEAVIVGVLVFIAYSLTGLPYAALTGVLAGVL 257

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           + IP   P S  A+    +   + + A            I    + P +VG  + LP L 
Sbjct: 258 SFIPYIGPFSACALGAIFIFTDSPWKALLSIAVFQGVQLIEGNVIYPRVVGQSVGLPTLF 317

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           T    + G    GL+G+     + A+I  + +E ++  +E K + S++
Sbjct: 318 TLAAALIGGNLFGLVGMIFFTPIFAVIYRLVREFVVEKEEKKAEGSAS 365


>gi|153009887|ref|YP_001371102.1| hypothetical protein Oant_2560 [Ochrobactrum anthropi ATCC 49188]
 gi|151561775|gb|ABS15273.1| protein of unknown function UPF0118 [Ochrobactrum anthropi ATCC
           49188]
          Length = 644

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 52/360 (14%), Positives = 121/360 (33%), Gaps = 20/360 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R     P  +     M + +  LYF K  F P+  A+++ F   PI +    ++     
Sbjct: 11  VRPITSAPPRLPTLAAMAVAVAILYFAKDVFLPLAIAVLLTFALAPIVAFL--RRAGLPR 68

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVS--------------KVVLANQHGIPV 106
             AVI +V+   L +     +  + + E+ + +S              +    N     +
Sbjct: 69  LFAVITSVAGGFLIVAVFSAVVAFQVSEVGQNISIYQYNIIEKIRTLKEASSDNSFFDRL 128

Query: 107 PRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLS 166
            R+   I  G   +    K  + P          ++                  +    +
Sbjct: 129 NRFAERI--GTEINRPEQKTQALPSDQPEEKPLLVQIFAPRHPVETLRSIIEPLVGPLAT 186

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
              +++ + F   +   +  +   L  +       +  +   K +    L   ++ I  G
Sbjct: 187 TGLVVVVVIFMLLEREELRDRFIRLVGYGDLHRTTEALQDAGKRVGQYLLTQLVVNITYG 246

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           + L    W+ G+P+    G++  ++  +P   P+    + ++L        +  L+  G 
Sbjct: 247 VPLAFGLWILGIPNAALWGMLAIVLRFVPYIGPVIAAILPLFLAFAVAPGWSLLLWTIGL 306

Query: 287 IEL--FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             +   +++  + P+L G    L  L      +      G +GL +   L   + V+ + 
Sbjct: 307 FVIIELLINNVIEPWLYGSRTGLSPLAIIVSAIFWTWLWGPVGLVLSTPLTVCLVVLGRH 366


>gi|282879126|ref|ZP_06287885.1| membrane family protein [Prevotella buccalis ATCC 35310]
 gi|281298768|gb|EFA91178.1| membrane family protein [Prevotella buccalis ATCC 35310]
          Length = 372

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 139/356 (39%), Gaps = 19/356 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +++F +L  + +L G   P   A +  +  +P+      K       +A+I T+  + +
Sbjct: 18  LLLIFFVLYLVNYLSGVLLPFFVAWLFAYLLYPLVKFVQYKMHVKVRAIAIIITMLAVAV 77

Query: 74  FIVPLLFLFYYGMLE----MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            I  L++     M+E    + ++++  +  + H   +  ++S      W ++  T+  S 
Sbjct: 78  VIGGLVYAIIPPMIEQFGKLNDILNNWINQSTHSSDLGSYISQ-----WITKNRTEIESF 132

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            +S        +   G+  +     +   + +    S+I ++   FF  +D   ++    
Sbjct: 133 MKSKDFSD---ILKTGMPKVFTLLGQTASVVISIIASLITLLYT-FFILQDYEFLTDNWI 188

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +       +W+++ + V + + +   G  ++++  G++ G    +   P  +ALG++  
Sbjct: 189 RIFPKKNRPFWEELMKDVERELNNYIRGQGLVSLILGILFGIGLSIINFPMAIALGIMMG 248

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG------AIELFIVDKTLRPFLVGG 303
            M ++P    ++   +    ++K          ++G       I   I D  L P ++G 
Sbjct: 249 FMNLVPYLHTLALVPMVFLSMLKAADTGQNFWIVFGLAMLVFLIVQVISDTVLTPKIMGK 308

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            + L        L      +G +GL +   L  L+   W++ +   K+  E     
Sbjct: 309 AMNLNPAILLLSLSVWGTLLGFIGLIVALPLTTLLIAYWQKYVTREKKQDETTQEQ 364


>gi|322386253|ref|ZP_08059885.1| permease [Streptococcus cristatus ATCC 51100]
 gi|321269715|gb|EFX52643.1| permease [Streptococcus cristatus ATCC 51100]
          Length = 364

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 65/342 (19%), Positives = 124/342 (36%), Gaps = 17/342 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS---TFLAVIATVSVMCLFIV 76
           I   L  L   F+P++   ++ F             ++          +A V  + +  +
Sbjct: 27  IWSGLQSLTSVFSPIILGGVLAFIFNVPMKKLEDLLDKCRVPQKLQRSLALVLEVLILAL 86

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            +  +    +  +   V+++        P V +WL     G+ +S          Q+   
Sbjct: 87  IMTGIVSIVVPTLTTAVNQLSATIGKVAPQVAKWLQQ--SGLLSSSQLKDLTKQLQNSD- 143

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                +    I  +         IF ++  S+I  I  +F F      +      L + L
Sbjct: 144 -----IVNRAISLLGSLTGNISAIFGNFF-SVIMSIFLMFAFLSSKEHLQTITSRLLQVL 197

Query: 196 FPAYWKKISRIVPKVIRST----FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
            P    K    V  VI  T     +G  I A+  G+++  AY L G+P     GV+  ++
Sbjct: 198 LPEKAVKRLSYVGSVIVETYDKFLMGQMIEAVIVGVLVFIAYSLTGLPYAALTGVLAGVL 257

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           + IP   P S  A+    +   + + A        +   I    + P +VG  + LP L 
Sbjct: 258 SFIPYIGPFSACALGAIFIFTDSPWKALLSIAVFQLVQLIEGNIIYPRVVGQSVGLPTLF 317

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           T    + G    GL+G+     + A+I  + +E ++  +E +
Sbjct: 318 TLAAALIGGNLFGLVGMIFFTPIFAVIYRLVREFVVEKEEAE 359


>gi|227542503|ref|ZP_03972552.1| membrane protein [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227181701|gb|EEI62673.1| membrane protein [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 469

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/337 (14%), Positives = 120/337 (35%), Gaps = 18/337 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFF----APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +R +++ + + + + + G       PV  AL+I    WP  +     +   +   A++  
Sbjct: 68  LRLLVIGVTVYAGWRILGALWQGVLPVALALLISSVLWPPAAWLKRHRLP-AWLAALVTM 126

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++V+  F   +  +      + + L  + V A Q    +  W  + P  +   +    + 
Sbjct: 127 ITVLGAFSAIIALIAPGVARQSQTLYFQSVDAIQR---LQLWAQEPPLSLKGEDF---NR 180

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              +++  + +      G  F    A+          +     +I  FF  +DG      
Sbjct: 181 IFGEAVAWIQQQAGNIAGGVFAGLGAAS------SLLVLATITLIITFFVLKDGERFMPW 234

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
             +        +  ++       + +      ++A+ + +++G    +  +P  +AL  +
Sbjct: 235 ARAFTGRQVGWHLTELLTRCWNTLSNYIRVQALVALIDAVLIGLGLVVMKIPMALALATL 294

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T +   +P  GA ++ T      L+   +  A  + +   I   +    L P L    + 
Sbjct: 295 TFVAGFVPIVGAFVAGTVAVAIALVTMGLTKALMVLILILIVQQLEGNVLSPMLQSKAMN 354

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L        +  G    G+ G  +   + A +AV+ +
Sbjct: 355 LHPAVVILVVTVGGGLFGIAGALLAVPITATVAVLLR 391


>gi|311747682|ref|ZP_07721467.1| putative transporter [Algoriphagus sp. PR1]
 gi|126575670|gb|EAZ79980.1| putative transporter [Algoriphagus sp. PR1]
          Length = 362

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 55/344 (15%), Positives = 123/344 (35%), Gaps = 17/344 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFL-KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           M      +  +I  I+LV    + K    P+           P+ +   ++K    T  +
Sbjct: 8   MPPYLKALSVLIFIIVLVFFLIVGKSLLVPLFMGGFFAVLFTPLSNWLEARKVPR-TLSS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           VI+ +  + L +  + F+         +  +       +   V  W              
Sbjct: 67  VISLIINITLVVGFVAFIISTVANFTNDFDNVSEKLTSYAKEVDEW--------TYENFG 118

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                  ++     +T L+ N  +         G +     + +      +FFF      
Sbjct: 119 IDENLDEKASNDFIKTVLQENSKNITGFALKTVGSLSGSILIPVF-----MFFFLLYRDH 173

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +++ +  +     P   +     + K+++S  +G+  +     ++  +A+   G+   + 
Sbjct: 174 LTEVMIRIYRDKDPQLVRMRITSLRKLLQSYVIGVLKVMGILAVLNVTAFTALGIKHAIF 233

Query: 244 LGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            G+I A + +IP   P+      +    L K ++F    +     +   I    L P +V
Sbjct: 234 FGLIAAFLNIIPYVGPLVGAMMPMIYSFLTKDSLFYPIAVLASYQLIQLIEGNILTPKIV 293

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           GG + L    TF GL+ G    G+ G+ +   ++A++  I++ S
Sbjct: 294 GGNVNLNPFITFLGLLVGASIWGIAGMILIIPVLAILREIFELS 337


>gi|229147156|ref|ZP_04275514.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           BDRD-ST24]
 gi|228636266|gb|EEK92738.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           BDRD-ST24]
          Length = 344

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 54/331 (16%), Positives = 120/331 (36%), Gaps = 12/331 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           + G   P + A    +   P+ +    K +       +++ + V    +  + +L    +
Sbjct: 1   MSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLILVFGAIVGLVTYLVTEAI 60

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
                L+  V +     +   +  +         +L +K     +  +      ++  G 
Sbjct: 61  SATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNHLGEPQRYTITQNIQNLGT 120

Query: 147 D----------FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           +           I    + F          ++F+++A FF   D   ++Q+   L  +  
Sbjct: 121 EATTQMKELLTAIISGLTNFISALPTTLTVLVFILLATFFISYDWHRLAQKARKLLPNRV 180

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
             Y K I   + K +         +     +++     +  VP  + + +IT ++ ++P 
Sbjct: 181 HGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRVPYAITIAIITGVVDLLPY 240

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G    F    IY+   G+   A  L +   + + +  + + P ++   I L  L T   
Sbjct: 241 LGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVI-VQRQIMEPKVLSSNIGLDPLATLVA 299

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           L  G +  G LGL IGPV + L+  + K ++
Sbjct: 300 LFVGFKLFGFLGLIIGPVTLVLLNTLHKANV 330


>gi|239831560|ref|ZP_04679889.1| Hypothetical protein OINT_1000763 [Ochrobactrum intermedium LMG
           3301]
 gi|239823827|gb|EEQ95395.1| Hypothetical protein OINT_1000763 [Ochrobactrum intermedium LMG
           3301]
          Length = 644

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 118/360 (32%), Gaps = 20/360 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R     P  +     M + +  LYF K  F P+  A+++ F   PI +    ++     
Sbjct: 11  VRPITSAPPRLPTLAAMAVTVAILYFAKDVFLPLAIAVLLTFALAPIVAFL--RRAGLPR 68

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKE--------------LVSKVVLANQHGIPV 106
             AVI +V+   L +     +  + + E+ +               + +    N     +
Sbjct: 69  LFAVITSVAGGFLIVAVFSAVVAFQVSEVAQNVTYYQYNIIEKIRTLKEAGSDNSFFDRL 128

Query: 107 PRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLS 166
             +   I  G   +    K  + P          ++                  +    +
Sbjct: 129 NSFAERI--GTEINRPEQKTQALPSDEPEEKPLLVQIFAPRHPVETLRSIIEPLIGPLAT 186

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
              +++ + F   +   +  +   L  +       +  +   K +    L   ++ I  G
Sbjct: 187 TGLVVVVVIFMLLEREELRDRFIRLVGYGDLHRTTEALQDAGKRVGQYLLTQLVVNITYG 246

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           + L    W+ G+P+    G++  ++  +P   P+    + ++L           L+  G 
Sbjct: 247 VPLAFGLWILGIPNAALWGMLAIVLRFVPYIGPVIAAILPLFLAFAVAPGWNLLLWTIGL 306

Query: 287 IEL--FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             +   +++  + P+L G    L  L      +      G +GL +   L   + V+ + 
Sbjct: 307 FVVIELLINNVIEPWLYGSRTGLSPLAIIVSAIFWAWLWGPVGLVLSTPLTVCLVVLGRH 366


>gi|304407429|ref|ZP_07389081.1| sporulation integral membrane protein YtvI [Paenibacillus
           curdlanolyticus YK9]
 gi|304343380|gb|EFM09222.1| sporulation integral membrane protein YtvI [Paenibacillus
           curdlanolyticus YK9]
          Length = 371

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/354 (13%), Positives = 129/354 (36%), Gaps = 12/354 (3%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            M   +GI   +++ + ++++ ++     P L   I+ +   P+     SK         
Sbjct: 6   AMRAWRGIFVAVMLVLFVLAVMYVTPLVYPFLIGWILAYALNPLIRFLQSKARLPRWLAV 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKEL-------VSKVVLANQHGIPVP---RWLSDI 113
            ++ +  +   +  +  L    + E+  L       ++         I  P     ++ I
Sbjct: 66  TLSLLLFVTAAVTIVSALITRIVAEIIHLSQSINGTINWWRDEFNKFIATPEMQDLINKI 125

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
                 +  + + +++  +          ++ + +     S   +   +    ++ ++++
Sbjct: 126 SAFYNENPKYQQPINNKIADTANLLAQTSSDLVTYFFNGLSNLLISLPNVLTIMVVVLLS 185

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
            FF  +D    S  L              +   + K +        I+     +V+    
Sbjct: 186 SFFIGKDWHKHSATLGGWLPEGIRKSMATVWTDLQKALFGYLRSQFIMISITAVVVIIGL 245

Query: 234 WLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            L GV   + +G++  ++ ++P  G          Y  + G++     L +   + L + 
Sbjct: 246 LLLGVQYAITIGLLIGLVDLLPYLGVGAVMVPWIAYTFLYGDLSLGIGLSILYGVIL-VA 304

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            + + P ++   + L  LPT   +  G++  G+LGL IGPV + ++    + ++
Sbjct: 305 RQMIEPKVLASSVGLDPLPTLIAMFVGLKLFGVLGLIIGPVSLVILFAFHRANV 358


>gi|228923341|ref|ZP_04086629.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228836295|gb|EEM81648.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 365

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 59/351 (16%), Positives = 130/351 (37%), Gaps = 16/351 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I+R + + +  V+ +++  + + ++   II F    + +  ++   +   F   +A +  
Sbjct: 2   ILRLIFVIVATVAGFYVLLYISGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVS 61

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + L    ++ L  Y + E     + ++       P     +          L+   +S  
Sbjct: 62  LILVFGAIVGLVTYLVTEAISATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKF 121

Query: 131 QSLKILSETFLKTNGIDF--------------IPRFASRFGMIFLDYCLSIIFMIIALFF 176
             L       +  N  +               I    + F          ++F+++A FF
Sbjct: 122 NHLGEPQRYTITQNIQNLGTEATTQMKELLTTIISGLTNFISALPTTLTVLVFILLATFF 181

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
              D   ++Q+   L  +    Y K I   + K +         +     +++     + 
Sbjct: 182 ISYDWHRLAQKARKLLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLIL 241

Query: 237 GVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
            VP  + + +IT ++ ++P  G    F    IY+   G+   A  L +   + + +  + 
Sbjct: 242 RVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVI-VQRQI 300

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           + P ++   I L  L T   L  G +  G LGL IGPV + L+  + K ++
Sbjct: 301 MEPKVLSSNIGLDPLATLVALFVGFKLFGFLGLIIGPVTLVLLNTLHKANV 351


>gi|327459002|gb|EGF05350.1| permease [Streptococcus sanguinis SK1057]
          Length = 365

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 66/344 (19%), Positives = 123/344 (35%), Gaps = 17/344 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS---TFLAVIATVSVMCLFIV 76
           I   L  L   F+P++   ++ F             ++          +A V  + +  +
Sbjct: 27  IWSGLQSLTSVFSPIILGGVLAFIFNVPMKKLEDFLDKCRIPQKLQRGLALVLEVLILAL 86

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            +  +    +  +   V+++        P V +WL     G+ +S          Q+   
Sbjct: 87  IMTGIVSIVVPTLTTAVNQLSATIGKVAPQVAKWLQQ--SGLLSSSQLKDLTKQLQNSD- 143

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                +    I  +         IF ++  S+I  I  +F F      +      L + L
Sbjct: 144 -----IVNRAISLLGSLTGNISAIFGNFF-SVIMSIFLMFAFLSSKEHLQTITSRLLQVL 197

Query: 196 FPAYWKKISRIVPKVIRST----FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
            P    K    V  VI  T     +G  I A+  G+++  AY L G+P     GV+  ++
Sbjct: 198 LPEKAVKRLSYVGSVIVETYDKFLMGQMIEAVIVGVLVFIAYSLTGLPYAALTGVLAGVL 257

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           + IP   P S  A+    +   + + A            I    + P +VG  + LP L 
Sbjct: 258 SFIPYIGPFSACALGAIFIFTDSPWKALLSIAVFQGVQLIEGNVIYPRVVGQSVGLPTLF 317

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           T    + G    GL+G+     + A+I  + +E ++  +E  E 
Sbjct: 318 TLAAALIGGNLFGLVGMIFFTPIFAVIYRLVREFVVEKEERNES 361


>gi|300772564|ref|ZP_07082434.1| permease [Sphingobacterium spiritivorum ATCC 33861]
 gi|300760867|gb|EFK57693.1| permease [Sphingobacterium spiritivorum ATCC 33861]
          Length = 396

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 53/332 (15%), Positives = 115/332 (34%), Gaps = 15/332 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
              + +I+  +Y  +    P+L ++II  T +PI +    K     +  A+++ +  + +
Sbjct: 18  LFALVLIIALMYVTQSVLVPLLFSIIISITLFPIANFLERKLHFVRSLAAIVSVIIAILI 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               + F+    + E   +        +  + V         G +  +      S   + 
Sbjct: 78  IGGLIWFI----VHESIIIGKDATDITKKVMSVVESFQSWVEGRFGVQR-----SEMAAQ 128

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                  +  N   ++       G       L  IF+   L+  YRD     +       
Sbjct: 129 FQEQSNKMLNNVGGYLSTAFGSIGSTLAGMVLVPIFIFFLLY--YRD--FFKEFFFKAFP 184

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           +        +   + +VI+S FLG+  +     ++      + G+      G + + + +
Sbjct: 185 NTENQKVHGVLNRIYEVIQSYFLGLVTVMGIVAVLNTVGLMIMGIEYAWFFGSLASFLML 244

Query: 254 IPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           +P               L  K N + A  +  W  +  F+    + P +VGG + +  L 
Sbjct: 245 LPYIGIAIGSILPALFALATKDNAWYAIGVIAWFQVVQFLEGNIITPNIVGGKVSINPLM 304

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               ++ G    GL GL +   + A + VI+ 
Sbjct: 305 AIIAILIGGMIFGLAGLILALPMTAALKVIFD 336


>gi|254823821|ref|ZP_05228822.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|293593043|gb|EFG00804.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
          Length = 378

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 122/340 (35%), Gaps = 14/340 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           + +    I+F++L   Y            F P+L A  + +   P+      +K      
Sbjct: 17  EILAVVAILFVLLQMKYIFSPIGIIVSTLFMPILVAGFLFYLFNPLVLFLEKRKVPR-LL 75

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++  ++ + L ++ ++ L      ++ EL   +    Q      +WL D+       +
Sbjct: 76  SVILIFIAFITLVVLAVMQLGPTLADQVAELAKAIPGYWQ---DFEKWLQDLSNNSALKD 132

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L    +        +S   + +  +D +             + + ++ +   +F+ ++DG
Sbjct: 133 L---DIKQELEKLNISLPKIMSVVVDGVASSFGAIVSFVSSFVMILVTVPFIVFYMFKDG 189

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               +           +  K+I + + K I +      I  +  GL     Y + G P  
Sbjct: 190 HKFVESSGRFFPAGIRSEAKQIIKEMNKTISTYISSQAIDCMFVGLFTFIGYLIIGQPYA 249

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +  G I     +IP   P    A ++ + +  +   A  + +   I   I    L P+++
Sbjct: 250 LLFGFIAGATNIIPYLGPFIGAAPAVIVALFTSPVQALLVIVVVTIVQQIDSNLLSPYIM 309

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           G  + +  L     L+      G+ G+ +G  L A++  I
Sbjct: 310 GKSLSIHPLTIIIILIVAGNLAGIFGMILGVPLYAVVKTI 349


>gi|49187485|ref|YP_030738.1| hypothetical protein BAS4490 [Bacillus anthracis str. Sterne]
 gi|165869655|ref|ZP_02214313.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0488]
 gi|167638139|ref|ZP_02396417.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0193]
 gi|170705406|ref|ZP_02895870.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0389]
 gi|177651155|ref|ZP_02933986.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0174]
 gi|190569043|ref|ZP_03021943.1| sporulation integral membrane protein YtvI [Bacillus anthracis
           Tsiankovskii-I]
 gi|227817381|ref|YP_002817390.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           CDC 684]
 gi|229603687|ref|YP_002868875.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0248]
 gi|254736704|ref|ZP_05194410.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           Western North America USA6153]
 gi|254754661|ref|ZP_05206696.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           Vollum]
 gi|254757493|ref|ZP_05209520.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           Australia 94]
 gi|49181412|gb|AAT56788.1| membrane protein, putative [Bacillus anthracis str. Sterne]
 gi|164714484|gb|EDR20003.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0488]
 gi|167513956|gb|EDR89324.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0193]
 gi|170129531|gb|EDS98394.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0389]
 gi|172082981|gb|EDT68043.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0174]
 gi|190559825|gb|EDV13810.1| sporulation integral membrane protein YtvI [Bacillus anthracis
           Tsiankovskii-I]
 gi|227005027|gb|ACP14770.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           CDC 684]
 gi|229268095|gb|ACQ49732.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0248]
          Length = 372

 Score = 97.2 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 54/335 (16%), Positives = 122/335 (36%), Gaps = 12/335 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           +L ++ G   P + A    +   P+ +    K +       +++ + V    +  + +L 
Sbjct: 25  ALLYVSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLILVFGAIVGLVTYLV 84

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              +     L+  V +     +   +  +         +L +K     +  +      ++
Sbjct: 85  TEAISATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNHLGEPQRYTITQNIQ 144

Query: 143 TNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             G +           I    + F          ++F+++A FF   D   ++Q++    
Sbjct: 145 NLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFISNDWHRLAQKVRKFL 204

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            +    Y K I   + K +         +     +++     +  VP  + + +IT ++ 
Sbjct: 205 PNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRVPYAITIAIITGVVD 264

Query: 253 MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++P  G    F    IY+   G+   A  L +   + + +  + + P ++   I L  L 
Sbjct: 265 LLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVI-VQRQIMEPKVLSSNIGLDPLA 323

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           T   L  G +  G LGL IGPV + L+  + K  +
Sbjct: 324 TLIALFVGFKLFGFLGLIIGPVTLVLLNTLHKARV 358


>gi|154687289|ref|YP_001422450.1| YueF [Bacillus amyloliquefaciens FZB42]
 gi|154353140|gb|ABS75219.1| YueF [Bacillus amyloliquefaciens FZB42]
          Length = 450

 Score = 97.2 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 52/324 (16%), Positives = 117/324 (36%), Gaps = 13/324 (4%)

Query: 25  YFLKGFFA-------PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           +  + FF        P+L + I+ F   PI      K     T   ++  +  + L    
Sbjct: 110 FIFQPFFGFITTLFFPILISGILFFIFNPIVRLLEKKIP--RTLAILLIYLVFIGLIAFM 167

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
              +      ++  L++           +   LS      W + + T+     + ++   
Sbjct: 168 FTAIGPIVASQVTGLINNFPDYIHQIQVLTAQLSH---SKWFTWMMTQDYVSIEKIQQSL 224

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
             FL++   +     ++ FG++  +  L +I +   LF+  +DG         +    + 
Sbjct: 225 TGFLQSLPQNITASLSAVFGVVT-NITLVVITVPFILFYMLKDGRRFPLLAVKILPTSYR 283

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
           A  +KI   +   + + F G  +I +  G      Y + G+   + LG++ A+  +IP  
Sbjct: 284 AEGRKIFNDLYVTLAAYFQGQLLICLFVGTACFIGYSIIGLQYALILGMVIAVTNIIPYL 343

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P    A ++ +    +   A    +   +   +    L P ++G  +    L     L+
Sbjct: 344 GPFLGAAPAVIIAFMDSPAKALFAVIVVVVVQQLDGNLLSPLVIGKRLNTHPLTIILLLI 403

Query: 318 GGVRTMGLLGLFIGPVLMALIAVI 341
           G     G+L + +   + A++   
Sbjct: 404 GAGSFGGILAMILAVPVYAVLKAF 427


>gi|229032241|ref|ZP_04188214.1| Sporulation integral membrane protein YtvI [Bacillus cereus AH1271]
 gi|228729021|gb|EEL80024.1| Sporulation integral membrane protein YtvI [Bacillus cereus AH1271]
          Length = 365

 Score = 97.2 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 54/335 (16%), Positives = 121/335 (36%), Gaps = 12/335 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           +L ++ G   P + A    +   P+ +    K +       +++ + V    +  + +L 
Sbjct: 18  ALLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLILVFGAIVGLVTYLV 77

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              +     L+  V +     +      +         +L +K     +  +      ++
Sbjct: 78  TEAISATTYLLQLVTVKFPDIVKFAEQFALNHIMPLYDDLISKFNHLGEPQRYTITQNIQ 137

Query: 143 TNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             G +           I    + F          ++F+++A FF   D   ++Q++    
Sbjct: 138 NLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFISYDWHRLAQKVRKFL 197

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            +    Y K I   + K +         +     +++     +  VP  + + +IT ++ 
Sbjct: 198 PNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRVPYAITIAIITGVVD 257

Query: 253 MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++P  G    F    IY+   G+   A  L +   + + +  + + P ++   I L  L 
Sbjct: 258 LLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVI-VQRQIMEPKVLSSNIGLDPLA 316

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           T   L  G +  G LGL IGPV + L+  + K  +
Sbjct: 317 TLIALFVGFKLFGFLGLIIGPVTLVLLNTLHKARV 351


>gi|46907143|ref|YP_013532.1| hypothetical protein LMOf2365_0930 [Listeria monocytogenes str. 4b
           F2365]
 gi|47092118|ref|ZP_00229911.1| membrane protein, putative [Listeria monocytogenes str. 4b H7858]
 gi|226223528|ref|YP_002757635.1| membrane protein [Listeria monocytogenes Clip81459]
 gi|254852403|ref|ZP_05241751.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|254931293|ref|ZP_05264652.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|254993201|ref|ZP_05275391.1| membrane protein [Listeria monocytogenes FSL J2-064]
 gi|300764118|ref|ZP_07074113.1| hypothetical protein LMHG_10093 [Listeria monocytogenes FSL N1-017]
 gi|46880410|gb|AAT03709.1| putative membrane protein [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47019558|gb|EAL10298.1| membrane protein, putative [Listeria monocytogenes str. 4b H7858]
 gi|225875990|emb|CAS04696.1| Putative membrane protein [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|258605710|gb|EEW18318.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|293582843|gb|EFF94875.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|300515108|gb|EFK42160.1| hypothetical protein LMHG_10093 [Listeria monocytogenes FSL N1-017]
 gi|328467003|gb|EGF38102.1| membrane protein [Listeria monocytogenes 1816]
 gi|328475390|gb|EGF46159.1| membrane protein [Listeria monocytogenes 220]
          Length = 378

 Score = 97.2 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 122/340 (35%), Gaps = 14/340 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           + +    I+F++L   Y            F P+L A  + +   P+      +K      
Sbjct: 17  EILAVVAILFVLLQMKYIFSPIGIIVSTLFMPILVAGFLFYLFNPLVLFLEKRKVPR-LL 75

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++  ++ + L ++ ++ L      ++ EL   +    Q      +WL D+       +
Sbjct: 76  SVILIFIAFITLVVLAVMQLGPTLADQVAELAKAIPGYWQ---DFEKWLQDLSNNSALKD 132

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L    +        +S   + +  +D +             + + ++ +   +F+ ++DG
Sbjct: 133 L---DIKQELEKLNISLPKIMSVVVDGVASSFGAIVSFVSSFVMILVTVPFIVFYMFKDG 189

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               +           +  K+I + + K I +      I  +  GL     Y + G P  
Sbjct: 190 HKFVESSGRFFPAGIRSEAKQIIKEMNKTISTYISSQAIDCMFVGLFTFIGYLIIGQPYA 249

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +  G I     +IP   P    A ++ + +  +   A  + +   I   I    L P+++
Sbjct: 250 LLFGFIAGATNIIPYLGPFIGAAPAVIVALFTSPVQALLVIVVVTIVQQIDSNLLSPYIM 309

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           G  + +  L     L+      G+ G+ +G  L A++  I
Sbjct: 310 GKSLSIHPLTIIIILIVAGNLAGIFGMILGVPLYAVVKTI 349


>gi|301056100|ref|YP_003794311.1| putative transmembrane protein [Bacillus anthracis CI]
 gi|300378269|gb|ADK07173.1| putative transmembrane protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 372

 Score = 97.2 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 55/335 (16%), Positives = 122/335 (36%), Gaps = 12/335 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           +L ++ G   P + A    +   P+ +    K +       +++ + V    +  + +L 
Sbjct: 25  ALLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLILVFGAIVGLVTYLV 84

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              +     L+  V +     +   +  +         +L +K     +  +      ++
Sbjct: 85  TEAISATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNHLGEPQRYTITQNIQ 144

Query: 143 TNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             G +           I    + F          ++F+++A FF   D   ++Q+   L 
Sbjct: 145 NLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFISYDWHRLAQKARKLL 204

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            +    Y K I   + K +         +     +++     +  VP  + + +IT ++ 
Sbjct: 205 PNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRVPYAITIAIITGVVD 264

Query: 253 MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++P  G    F    IY+   G+   A  L +   + + +  + + P ++   I L  L 
Sbjct: 265 LLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVI-VQRQIMEPKVLSSNIGLDPLA 323

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           T   L  G +  G LGL IGPV + L+  + K  +
Sbjct: 324 TLIALFVGFKLFGFLGLIIGPVTLVLLNTLHKARV 358


>gi|229072098|ref|ZP_04205307.1| Sporulation integral membrane protein YtvI [Bacillus cereus F65185]
 gi|228711032|gb|EEL62998.1| Sporulation integral membrane protein YtvI [Bacillus cereus F65185]
          Length = 365

 Score = 97.2 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 57/347 (16%), Positives = 124/347 (35%), Gaps = 15/347 (4%)

Query: 14  WMIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
             ++   L   Y L    G   P + A    +   P+ +    K +       +++ + V
Sbjct: 6   IFVIVATLAGFYVLLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLILV 65

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
               +  + +L    +     L+  V +     +   +  +         +L +K     
Sbjct: 66  FGAIVGLVTYLVTEAISATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNHLG 125

Query: 131 QSLKILSETFLKTNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +  +      ++  G +           I    + F          ++F+++A FF   D
Sbjct: 126 EPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFILLATFFISYD 185

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              ++Q+   L  +    Y K I   + K +         +     +++     +  VP 
Sbjct: 186 WHRLAQKARKLLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRVPY 245

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            + + +IT ++ ++P  G    F    IY+   G+   A  L +   + + +  + + P 
Sbjct: 246 AITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVI-VQRQIMEPK 304

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           ++   I L  L T   L  G +  G LGL IGPV + L+  + K ++
Sbjct: 305 VLSSNIGLDPLATLVALFVGFKLFGFLGLIIGPVTLVLLNTLHKANV 351


>gi|261206759|ref|ZP_05921450.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289566440|ref|ZP_06446866.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|260078889|gb|EEW66589.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289161761|gb|EFD09635.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
          Length = 393

 Score = 97.2 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 55/332 (16%), Positives = 121/332 (36%), Gaps = 10/332 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +     P+L ALI+ +   P+          S     +I  V ++ L  +  ++L  + 
Sbjct: 50  IIATILPPLLFALILYYLLEPVIKRLSKHL--SRNLSVIIVYVIILFLLGLGSVWLVPFL 107

Query: 86  MLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
             + K L+S +  L       + ++L   P     ++ +         +      + ++ 
Sbjct: 108 EEQAKTLISSLPDLFQDFQESLRQFLEKTPFADSFNQFFASIDDVTSDIAGFIGNYWESG 167

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
                 +  S          +++    I  FF  RD     Q + ++    F   +K ++
Sbjct: 168 -----AQRISNIFSTVTAIFITLFTGPIVAFFLLRDPQKFYQSVLAIVPPAFRTDFKNLT 222

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
           +I  + + S   G  I +   G V    + L G+     L +   ++ +IP  G  I+F 
Sbjct: 223 KIANQQLGSFLKGQIIASFILGAVYWVCFLLIGLEFASVLAISAGLLCIIPYIGPFIAFF 282

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
              I             + +W A++L   D  + P ++G  +++  +     L+     M
Sbjct: 283 PGLIIAFQDSTFMAVKFVIVWFAVQLLHGDLVI-PRVMGDRLQIHPITILIVLLVMGDLM 341

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G++G+  G  +  L+ ++        K+   K
Sbjct: 342 GIVGVIFGIPIYTLVKLLVTFIFRKFKQRYNK 373


>gi|315150243|gb|EFT94259.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0012]
          Length = 394

 Score = 97.2 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 56/334 (16%), Positives = 113/334 (33%), Gaps = 6/334 (1%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
                    PVL  +I+ +   P+      K      +   I  V ++ L ++  L LF 
Sbjct: 45  FVIFSAVLGPVLFGIILFYLLNPMVKRLEKKIP--RVWAIAILYVLIIALLVLAGLQLFP 102

Query: 84  YGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
               + +EL+ +     +  +  V  +++  P                  L    + F  
Sbjct: 103 IIQDQTEELIKQFPSFWKSTLQTVQEFMAKTPFAKDLESANESINQLWGKLANSFKDFAG 162

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            + +    +             L++    I  FF  +D     + +  +    F   + +
Sbjct: 163 -DYLQTGAQGLGSVFSAVSSTFLTLFTGPIIAFFLLKDKEKFYRFVKGIIPPAFRPDFDE 221

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
            S+I    I     G  I ++  G++    + L G+     L +   I+ +IP  G  I+
Sbjct: 222 YSQIANIQIGDYLKGQVIASLVLGIMYWPTFLLIGLQFGSILALAAGILCIIPYIGPFIA 281

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F    I             + +W AI+L   D  + P ++G  +K+  +     L+    
Sbjct: 282 FIPGLIIAFQDSTFMVIKFVIVWFAIQLIHGDFVI-PRVMGDKLKVHPITILLVLLVMGE 340

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             GL+G+  G  +  L+ V         K+   +
Sbjct: 341 LFGLMGVIFGIPMYCLVKVTVIYLFRKFKQRYNR 374


>gi|77411721|ref|ZP_00788059.1| membrane protein, putative [Streptococcus agalactiae CJB111]
 gi|77162229|gb|EAO73202.1| membrane protein, putative [Streptococcus agalactiae CJB111]
          Length = 396

 Score = 97.2 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 130/360 (36%), Gaps = 18/360 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYF----------LKGFFAPVLSALIIGFTSWPIYS---SF 51
           +LN Q ++  MI F++ ++++           +  F A ++  L+I    + +     +F
Sbjct: 18  ILNNQAVIALMITFLVFLTIFIFTKISFMFKPVFDFLAVLILPLVISGLLYYLLKPMVTF 77

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWL 110
           + K+        +     ++ L I  +         +++  +  +    N+  +    ++
Sbjct: 78  LEKRGIKRVTAILSVFTIIILLLIWAMSSFIPMMSNQLRHFMEDLPSYVNKVQMETSSFI 137

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
              P         +  LS+  S  +        N +D+    AS    +     ++ I  
Sbjct: 138 DHNPWLKSYKGEISSMLSNISSQAVSYAEKFSKNVLDWAGNLASTVARVT----VATIMA 193

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
              LF+  RD   +      +          +I R +   +     G  I+AI  G++  
Sbjct: 194 PFILFYLLRDSRKMKNGFLMVLPTKLRQPTDRILREMNSQMSGYVQGQIIVAITVGVIFS 253

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
             Y + G+   V LG+I  ++ M+P             L +         + +   IE  
Sbjct: 254 IMYSIIGLRYGVTLGIIAGVLNMVPYLGSFVAQIPVFILALVAGPVMVVKVAIVFVIEQT 313

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +  + + P ++G  + +  +   F L+      G+ G+F+   + A I V+ KE     K
Sbjct: 314 LEGRFVSPLVLGNKLSIHPITIMFILLTSGAMFGVWGVFLSIPIYASIKVVVKELFDWYK 373


>gi|297623384|ref|YP_003704818.1| hypothetical protein Trad_1150 [Truepera radiovictrix DSM 17093]
 gi|297164564|gb|ADI14275.1| protein of unknown function UPF0118 [Truepera radiovictrix DSM
           17093]
          Length = 390

 Score = 97.2 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 58/358 (16%), Positives = 131/358 (36%), Gaps = 18/358 (5%)

Query: 12  MRWMIMFI-ILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +R +I+   + ++LY L   +  +   L AL++ +   P+      ++   +  +++I T
Sbjct: 13  LRALIIVAGVALALYVLNLTRLAWRSFLIALLVAYLVNPLLVRLERRRVPRAVGVSLIMT 72

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             V+ + +  LL L    +    +L        +    +P WL       W   L     
Sbjct: 73  ALVLFVIVA-LLLLSSILV----DLAQLPAALGRSLTQLPSWLQSEDPPEWLQNLNLLAD 127

Query: 128 SHPQSLKILSETFLKTNGIDFI-------PRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +  + L   S+  L+ N ++++        R   +     +    ++  + + + F    
Sbjct: 128 NQQELLVFWSD--LRQNVLNWLELNARTLVRQIIQGTQGLVTGFFNLFILFVFIAFTMAG 185

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
             +I Q L  L         + +   +   +        + A    +V  +   L GVP+
Sbjct: 186 FPTIRQSLYELFPERRQPLARDLGMKLDAAVGGYLRAKVLEAGIMFVVSATVLSLLGVPN 245

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            +ALG+I A++  +P   PI  T +   + +  +   A    L       I    L P L
Sbjct: 246 PLALGLINAMLNPVPYIGPIIATMIEALVALTVSWQLALITALVMFAIEQIDGNILGPML 305

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +   + +  +     +  G    G  G+     + A + +++++        + + SS
Sbjct: 306 LSKGVDVHPVAILSAVTAGGALFGFWGVITAIPVTAFLQLLYRDYYKTSAWYRRRTSS 363


>gi|47565007|ref|ZP_00236050.1| hypothetical protein membrane Spanning protein [Bacillus cereus
           G9241]
 gi|47557793|gb|EAL16118.1| hypothetical protein membrane Spanning protein [Bacillus cereus
           G9241]
          Length = 365

 Score = 97.2 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 54/335 (16%), Positives = 122/335 (36%), Gaps = 12/335 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           +L ++ G   P + A    +   P+ +    K +       +++ + V    +  + +L 
Sbjct: 18  ALLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLILVFGAIVGLVTYLV 77

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              +     L+  V +     +   +  +         +L +K     +  +      ++
Sbjct: 78  TEAISATTYLLQLVTVKFPDIVAFAQQFALNHIMPLYDDLISKFNHLGEPQRYTITQNIQ 137

Query: 143 TNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             G +           I    + F          ++F+++A FF   D   ++Q++    
Sbjct: 138 NLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFISYDWHRLAQKVRKFL 197

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            +    Y K I   + K +         +     +++     +  VP  + + +IT ++ 
Sbjct: 198 PNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRVPYAITIAIITGVVD 257

Query: 253 MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++P  G    F    IY+   G+   A  L +   + + +  + + P ++   I L  L 
Sbjct: 258 LLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVI-VQRQIMEPKVLSSNIGLDPLA 316

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           T   L  G +  G LGL IGPV + L+  + K  +
Sbjct: 317 TLIALFVGFKLFGFLGLIIGPVTLVLLNTLHKARV 351


>gi|251810791|ref|ZP_04825264.1| permease [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805719|gb|EES58376.1| permease [Staphylococcus epidermidis BCM-HMP0060]
 gi|329735852|gb|EGG72131.1| putative membrane protein [Staphylococcus epidermidis VCU028]
          Length = 405

 Score = 97.2 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 53/363 (14%), Positives = 133/363 (36%), Gaps = 22/363 (6%)

Query: 11  IMRWMIMFIILVSL----YFLKGFF-------APVLSALIIGFTSWPIYSSFISKKEESS 59
           ++  +++ I++       Y  + F        AP++ +L++ +   PI +     +    
Sbjct: 35  LIALVLLGIVIFIFDKISYVFQPFIIVFNTIAAPIIVSLVLFYLFNPIVNMMERYRIPR- 93

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
                   + +  +++  +  +     L +  + S++    ++       ++     +  
Sbjct: 94  -------LLGITIIYVAIIGIITLIVNLLIPIIGSQIESFIKNTPNYLHKITRSLDKLNN 146

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDF---IPRFASRFGMIFLDYCLSIIFMIIALFF 176
           + + + ++         ++  + +   D+        + F     +  + I      LFF
Sbjct: 147 NTILSGYMGQVNEWLESAQKKIPSMVSDYSDGFGSKLATFAEAVANIGIVIGTTPFVLFF 206

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
             +DG         +    F   +  +   +   + S   G  I++   GL+L   Y + 
Sbjct: 207 MLKDGHKFKDYTTKIMPPKFRKDFHDLLEKMSVQVGSYIQGQIIVSFCIGLLLFIGYSII 266

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           G+   + L  I A+ +++P   P    + +I + I  +      L +   +  F     +
Sbjct: 267 GLKYALVLASIAAVTSVVPYLGPTIAISPAIVIAIITSPLMLLKLAVVWTLVQFFEGHFI 326

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            P ++G  +K+  L   F L+     MG++G+ IG  L A++ V+     M  K    + 
Sbjct: 327 SPNVMGKTLKIHPLTIIFILLCAGNLMGIVGVIIGIPLYAVLKVLVSHIFMLFKRRYNRY 386

Query: 357 SSN 359
             N
Sbjct: 387 YGN 389


>gi|15901352|ref|NP_345956.1| hypothetical protein SP_1505 [Streptococcus pneumoniae TIGR4]
 gi|15903400|ref|NP_358950.1| hypothetical protein spr1357 [Streptococcus pneumoniae R6]
 gi|116517014|ref|YP_816794.1| hypothetical protein SPD_1332 [Streptococcus pneumoniae D39]
 gi|148984848|ref|ZP_01818101.1| hypothetical protein CGSSp3BS71_09436 [Streptococcus pneumoniae
           SP3-BS71]
 gi|148988549|ref|ZP_01819982.1| hypothetical protein CGSSp6BS73_08494 [Streptococcus pneumoniae
           SP6-BS73]
 gi|148992611|ref|ZP_01822279.1| hypothetical protein CGSSp9BS68_04385 [Streptococcus pneumoniae
           SP9-BS68]
 gi|148997435|ref|ZP_01825040.1| hypothetical protein CGSSp11BS70_01067 [Streptococcus pneumoniae
           SP11-BS70]
 gi|149003282|ref|ZP_01828178.1| hypothetical protein CGSSp14BS69_02714 [Streptococcus pneumoniae
           SP14-BS69]
 gi|149008127|ref|ZP_01831658.1| hypothetical protein CGSSp18BS74_08355 [Streptococcus pneumoniae
           SP18-BS74]
 gi|149021771|ref|ZP_01835778.1| hypothetical protein CGSSp23BS72_09413 [Streptococcus pneumoniae
           SP23-BS72]
 gi|168483886|ref|ZP_02708838.1| transport protein [Streptococcus pneumoniae CDC1873-00]
 gi|168489665|ref|ZP_02713864.1| transport protein [Streptococcus pneumoniae SP195]
 gi|168493404|ref|ZP_02717547.1| transport protein [Streptococcus pneumoniae CDC3059-06]
 gi|168575960|ref|ZP_02721875.1| transport protein [Streptococcus pneumoniae MLV-016]
 gi|169832381|ref|YP_001694911.1| transport protein [Streptococcus pneumoniae Hungary19A-6]
 gi|194397569|ref|YP_002038134.1| hypothetical protein SPG_1427 [Streptococcus pneumoniae G54]
 gi|221232217|ref|YP_002511370.1| hypothetical protein SPN23F_14690 [Streptococcus pneumoniae ATCC
           700669]
 gi|225857130|ref|YP_002738641.1| transport protein [Streptococcus pneumoniae P1031]
 gi|225859262|ref|YP_002740772.1| transport protein [Streptococcus pneumoniae 70585]
 gi|225861338|ref|YP_002742847.1| transport protein [Streptococcus pneumoniae Taiwan19F-14]
 gi|237649210|ref|ZP_04523462.1| transport protein [Streptococcus pneumoniae CCRI 1974]
 gi|237821819|ref|ZP_04597664.1| transport protein [Streptococcus pneumoniae CCRI 1974M2]
 gi|298230580|ref|ZP_06964261.1| transport protein [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255875|ref|ZP_06979461.1| transport protein [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503240|ref|YP_003725180.1| permease [Streptococcus pneumoniae TCH8431/19A]
 gi|307068149|ref|YP_003877115.1| putative permease [Streptococcus pneumoniae AP200]
 gi|307126929|ref|YP_003878960.1| transport protein [Streptococcus pneumoniae 670-6B]
 gi|14972994|gb|AAK75596.1| membrane protein [Streptococcus pneumoniae TIGR4]
 gi|15459004|gb|AAL00161.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116077590|gb|ABJ55310.1| membrane protein, putative [Streptococcus pneumoniae D39]
 gi|147756490|gb|EDK63531.1| hypothetical protein CGSSp11BS70_01067 [Streptococcus pneumoniae
           SP11-BS70]
 gi|147758742|gb|EDK65739.1| hypothetical protein CGSSp14BS69_02714 [Streptococcus pneumoniae
           SP14-BS69]
 gi|147760433|gb|EDK67411.1| hypothetical protein CGSSp18BS74_08355 [Streptococcus pneumoniae
           SP18-BS74]
 gi|147922870|gb|EDK73986.1| hypothetical protein CGSSp3BS71_09436 [Streptococcus pneumoniae
           SP3-BS71]
 gi|147925750|gb|EDK76825.1| hypothetical protein CGSSp6BS73_08494 [Streptococcus pneumoniae
           SP6-BS73]
 gi|147928628|gb|EDK79642.1| hypothetical protein CGSSp9BS68_04385 [Streptococcus pneumoniae
           SP9-BS68]
 gi|147930007|gb|EDK80994.1| hypothetical protein CGSSp23BS72_09413 [Streptococcus pneumoniae
           SP23-BS72]
 gi|168994883|gb|ACA35495.1| transport protein [Streptococcus pneumoniae Hungary19A-6]
 gi|172042748|gb|EDT50794.1| transport protein [Streptococcus pneumoniae CDC1873-00]
 gi|183571988|gb|EDT92516.1| transport protein [Streptococcus pneumoniae SP195]
 gi|183576790|gb|EDT97318.1| transport protein [Streptococcus pneumoniae CDC3059-06]
 gi|183578167|gb|EDT98695.1| transport protein [Streptococcus pneumoniae MLV-016]
 gi|194357236|gb|ACF55684.1| conserved hypothetical protein [Streptococcus pneumoniae G54]
 gi|220674678|emb|CAR69251.1| putative membrane protein [Streptococcus pneumoniae ATCC 700669]
 gi|225720027|gb|ACO15881.1| transport protein [Streptococcus pneumoniae 70585]
 gi|225725463|gb|ACO21315.1| transport protein [Streptococcus pneumoniae P1031]
 gi|225727330|gb|ACO23181.1| transport protein [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238835|gb|ADI69966.1| permease [Streptococcus pneumoniae TCH8431/19A]
 gi|301794517|emb|CBW36959.1| putative membrane protein [Streptococcus pneumoniae INV104]
 gi|301800341|emb|CBW32970.1| putative membrane protein [Streptococcus pneumoniae OXC141]
 gi|301802225|emb|CBW34975.1| putative membrane protein [Streptococcus pneumoniae INV200]
 gi|306409686|gb|ADM85113.1| Predicted permease [Streptococcus pneumoniae AP200]
 gi|306483991|gb|ADM90860.1| transport protein [Streptococcus pneumoniae 670-6B]
 gi|327389688|gb|EGE88033.1| hypothetical protein SPAR5_1378 [Streptococcus pneumoniae GA04375]
 gi|332072296|gb|EGI82779.1| hypothetical protein SPAR50_1465 [Streptococcus pneumoniae GA17570]
 gi|332073839|gb|EGI84317.1| hypothetical protein SPAR68_1511 [Streptococcus pneumoniae GA41301]
 gi|332074253|gb|EGI84730.1| hypothetical protein SPAR148_1427 [Streptococcus pneumoniae
           GA17545]
          Length = 388

 Score = 97.2 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 55/338 (16%), Positives = 120/338 (35%), Gaps = 11/338 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    L FL     PV+ + ++ +   PI       K            +++  +F+
Sbjct: 42  ISFLFSPVLDFLAVVMLPVILSGLLYYLLNPIVDWMEKHKVNR--------VIAITIVFV 93

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL---WTKHLSHPQS 132
           +  LF+ +   + +  L  +V+   ++       +  I  G+ A  L   +   L    +
Sbjct: 94  IIALFIIWGLAVAIPNLQRQVLTFARNVPVYLEDIDRIVNGLVAQHLPDDFRPQLEQVLT 153

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                 T L +        + S F        +++I +   LF+  RDG  +   L    
Sbjct: 154 NFSSQATVLASKVSSQAVNWVSAFISGASQVIVALIIVPFMLFYLLRDGKGLRNYLTQFI 213

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                    ++   V + + +   G   +AI   ++    + + G+   V LGV   I+ 
Sbjct: 214 PRKLKEPVGQVLSDVNQQLSNYVRGQVTVAIIVAVMFIIFFKIIGLRYAVTLGVTAGILN 273

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++P          ++ L +         + +   +E  I  + + P ++G  + +  +  
Sbjct: 274 LVPYLGSFLAMLPALVLGLIAGPVMLLKVVIVFIVEQTIEGRFVSPLILGSQLNIHPINV 333

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            F L+      G+ G+ +G  + A   V+        K
Sbjct: 334 LFVLLTSGSMFGIWGVLLGIPVYASAKVVISAIFEWYK 371


>gi|228903114|ref|ZP_04067250.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           IBL 4222]
 gi|228967694|ref|ZP_04128713.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228791986|gb|EEM39569.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228856523|gb|EEN01047.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           IBL 4222]
          Length = 365

 Score = 97.2 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 56/347 (16%), Positives = 124/347 (35%), Gaps = 15/347 (4%)

Query: 14  WMIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
             ++   +   Y L    G   P + A    +   P+ +    K +       +++ + V
Sbjct: 6   IFVIVATIAGFYVLLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLILV 65

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
               +  + +L    +     L+  V +     +   +  +         +L +K     
Sbjct: 66  FGAIVGLVTYLVTEAISATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNHLG 125

Query: 131 QSLKILSETFLKTNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +  +      ++  G +           I    + F          ++F+++A FF   D
Sbjct: 126 EPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFILLATFFISYD 185

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              ++Q+   L  +    Y K I   + K +         +     +++     +  VP 
Sbjct: 186 WHRLAQKTRKLLPNRVHGYGKTIFVDLKKALFGFVKAQLTLVSMTTVIVLIGLLILRVPY 245

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            + + +IT ++ ++P  G    F    IY+   G+   A  L +   + + +  + + P 
Sbjct: 246 AITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVI-VQRQIMEPK 304

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           ++   I L  L T   L  G +  G LGL IGPV + L+  + K ++
Sbjct: 305 VLSSNIGLDPLATLVALFVGFKLFGFLGLIIGPVTLVLLNTLHKANV 351


>gi|228935904|ref|ZP_04098714.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|229186851|ref|ZP_04314006.1| Sporulation integral membrane protein YtvI [Bacillus cereus BGSC
           6E1]
 gi|228596588|gb|EEK54253.1| Sporulation integral membrane protein YtvI [Bacillus cereus BGSC
           6E1]
 gi|228823672|gb|EEM69494.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 365

 Score = 97.2 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 54/335 (16%), Positives = 122/335 (36%), Gaps = 12/335 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           +L ++ G   P + A    +   P+ +    K +       +++ + V    +  + +L 
Sbjct: 18  ALLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLILVFGAIVGLVTYLV 77

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              +     L+  V +     +   +  +         +L +K     +  +      ++
Sbjct: 78  TEAISATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNHLGEPQRYTITQNIQ 137

Query: 143 TNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             G +           I    + F          ++F+++A FF   D   ++Q++    
Sbjct: 138 NLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFISYDWHRLAQKVRKFL 197

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            +    Y K I   + K +         +     +++     +  VP  + + +IT ++ 
Sbjct: 198 PNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRVPYAITIAIITGVVD 257

Query: 253 MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++P  G    F    IY+   G+   A  L +   + + +  + + P ++   I L  L 
Sbjct: 258 LLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVI-VQRQIMEPKVLSSNIGLDPLA 316

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           T   L  G +  G LGL IGPV + L+  + K  +
Sbjct: 317 TLIALFVGFKLFGFLGLIIGPVTLVLLNTLHKARV 351


>gi|222098058|ref|YP_002532115.1| hypothetical protein BCQ_4400 [Bacillus cereus Q1]
 gi|228987844|ref|ZP_04147953.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229141322|ref|ZP_04269860.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           BDRD-ST26]
 gi|229198746|ref|ZP_04325443.1| Sporulation integral membrane protein YtvI [Bacillus cereus m1293]
 gi|221242116|gb|ACM14826.1| membrane protein, putative [Bacillus cereus Q1]
 gi|228584729|gb|EEK42850.1| Sporulation integral membrane protein YtvI [Bacillus cereus m1293]
 gi|228642103|gb|EEK98396.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           BDRD-ST26]
 gi|228771892|gb|EEM20349.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 365

 Score = 97.2 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 54/335 (16%), Positives = 122/335 (36%), Gaps = 12/335 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           +L ++ G   P + A    +   P+ +    K +       +++ + V    +  + +L 
Sbjct: 18  ALLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLILVFGAIVGLVTYLV 77

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              +     L+  V +     +   +  +         +L +K     +  +      ++
Sbjct: 78  TEAISATTYLLQLVTVKFPDIVAFAQQFALNHIMPLYDDLISKFNHLGEPQRYTITQNIQ 137

Query: 143 TNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             G +           I    + F          ++F+++A FF   D   ++Q++    
Sbjct: 138 NLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFISYDWHRLAQKVRKFL 197

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            +    Y K I   + K +         +     +++     +  VP  + + +IT ++ 
Sbjct: 198 PNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRVPYAITIAIITGVVD 257

Query: 253 MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++P  G    F    IY+   G+   A  L +   + + +  + + P ++   I L  L 
Sbjct: 258 LLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVI-VQRQIMEPKVLSSNIGLDPLA 316

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           T   L  G +  G LGL IGPV + L+  + K  +
Sbjct: 317 TLIALFVGFKLFGFLGLIIGPVTLVLLNTLHKARV 351


>gi|76788071|ref|YP_329894.1| hypothetical protein SAK_1281 [Streptococcus agalactiae A909]
 gi|76563128|gb|ABA45712.1| membrane protein, putative [Streptococcus agalactiae A909]
          Length = 396

 Score = 97.2 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 131/360 (36%), Gaps = 18/360 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYF----------LKGFFAPVLSALIIGFTSWPIYS---SF 51
           +LN Q ++  MI F++ ++++           +  F A ++  L+I    + +     +F
Sbjct: 18  ILNNQAVIALMITFLVFLTIFIFTKISFMFKPVFDFLAVLILPLVISGLLYYLLKPMVTF 77

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWL 110
           + K+        +     ++ L I  +         +++  +  +    N+  +    ++
Sbjct: 78  LEKRGIKRVTAILSVFTIIILLLIWAMSSFIPMMSNQLRHFMEDLPSYVNKVQMETSSFI 137

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
              P         +  LS+  S  +        N +D+    AS    +     ++ I  
Sbjct: 138 DHNPWLKSYKGEISSMLSNISSQAVSYAEKFSKNVLDWAGNLASTVARVT----VATIMA 193

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
              LF+  RD  ++      +          +I R +   +     G  I+AI  G++  
Sbjct: 194 PFILFYLLRDSRNMKNGFLMVLPTKLRQPTDRILREMNSQMSGYVQGQIIVAITVGVIFS 253

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
             Y + G+   V LG+I  ++ M+P             L +         + +   IE  
Sbjct: 254 IMYSIIGLRYGVTLGIIAGVLNMVPYLGSFVAQIPVFTLALVAGPVMVVKVAIVFVIEQT 313

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +  + + P ++G  + +  +   F L+      G+ G+F+   + A I V+ KE     K
Sbjct: 314 LEGRFVSPLVLGNKLSIHPITIMFILLTSGAMFGVWGVFLSIPIYASIKVVVKELFDWYK 373


>gi|226307717|ref|YP_002767677.1| hypothetical protein RER_42300 [Rhodococcus erythropolis PR4]
 gi|226186834|dbj|BAH34938.1| hypothetical membrane protein [Rhodococcus erythropolis PR4]
          Length = 425

 Score = 97.2 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 49/308 (15%), Positives = 104/308 (33%), Gaps = 17/308 (5%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           L+ +     PV  A+++    WP     I +        A I  V  + +    +  +  
Sbjct: 80  LWVI---ILPVALAIVVATVMWPPTRGMIKR-GMPPAAAAGITLVLSIGILAGVIAGIVP 135

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             + +  EL +K          V  WL   P  +                 + +      
Sbjct: 136 SVVSQAPELANKTTEGIN---QVQDWLQGPPLNLK---------DDQIDNAVHAVITKVQ 183

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
                I               +++  ++I  FFF +DG      L ++G      + +++
Sbjct: 184 ESGTAIASGVFSGVSTASSLLVTLGLVLILAFFFIKDGPRFIPWLHAVGGGRAGRHLEEV 243

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISF 262
              +   +        ++++ + + +G+   + GVP    L ++T I   IP  GA ++ 
Sbjct: 244 LTRMWDTLGGFIRTQALVSLIDAVFIGAGLLILGVPLAPVLAILTFIGGFIPIVGAFVAG 303

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
               +  L+   +  A  + +       I    L+P L    +KL  +     +  G   
Sbjct: 304 ALAVLVALVANGLTTAIIVLIIILAVQQIEGNVLQPVLQSKSMKLHAVIVLLAVAAGSSL 363

Query: 323 MGLLGLFI 330
            G++G F+
Sbjct: 364 YGIVGAFL 371


>gi|125717282|ref|YP_001034415.1| permease, putative [Streptococcus sanguinis SK36]
 gi|125497199|gb|ABN43865.1| Permease, putative [Streptococcus sanguinis SK36]
          Length = 360

 Score = 97.2 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 65/342 (19%), Positives = 123/342 (35%), Gaps = 17/342 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS---TFLAVIATVSVMCLFIV 76
           I   L  L   F+P++   ++ F              +          +A +  + +  +
Sbjct: 27  IWSGLQSLTSVFSPIILGGVLAFIFNVPMKKLEDFLGKCRVPQKLQRGLALILEVLILAL 86

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            +  +    +  +   V+++        P V +WL     G+ +S          Q+   
Sbjct: 87  IMTGIVSIVVPTLTTAVNQLSATIGKVAPQVAKWLQQ--SGLLSSSQLKDLTKQLQNSD- 143

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                +    I  +         IF ++  S+I  I  +F F      +      L + L
Sbjct: 144 -----IVNRAISLLGSLTGNISAIFGNFF-SVIMSIFLMFAFLSSKEHLQTITSRLLQVL 197

Query: 196 FPAYWKKISRIVPKVIRST----FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
            P    K    V  VI  T     +G  I A+  G+++  AY L G+P     GV+  ++
Sbjct: 198 LPEKAVKRLSYVGSVIVETYDKFLMGQMIEAVIVGILVFIAYSLTGLPYAALTGVLAGVL 257

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           + IP   P S  A+    +   + + A        +   I    + P +VG  + LP L 
Sbjct: 258 SFIPYIGPFSACALGAIFIFTDSPWKALLSIAVFQLVQLIEGNIIYPRVVGQSVGLPTLF 317

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           T    + G    GL+G+     + A+I  + +E ++  +E K
Sbjct: 318 TLAAALIGGNLFGLVGMIFFTPIFAVIYRLVREFVVEKEEKK 359


>gi|83311943|ref|YP_422207.1| permease [Magnetospirillum magneticum AMB-1]
 gi|82946784|dbj|BAE51648.1| Predicted permease [Magnetospirillum magneticum AMB-1]
          Length = 358

 Score = 97.2 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 54/346 (15%), Positives = 114/346 (32%), Gaps = 17/346 (4%)

Query: 5   MLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           M + Q +  W+I  +  LV LY L+    P ++ + + +   P+          S T   
Sbjct: 1   MSSGQRLRFWLIGGVAFLVLLYMLRSVMLPFVAGMAVAYFLDPLADRMERA-GLSRTLAT 59

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV----VLANQHGIPVPRWLSDIPGGMWA 119
            I  +    +  + L  L      ++   V KV           +P+   +         
Sbjct: 60  AIICLVFFGVMGLGLTLLAPIIQQQVVTFVQKVPVYAQSLQTRAMPLLEEVYRHLSPEDL 119

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            +L +   ++  +        LK              G+  +     +    +  F+  R
Sbjct: 120 EKLRSSAGAYAGTAVGWGLGVLKGVLSG---------GIAVMSILSLLFITPVVTFYLLR 170

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D   +  ++D+          +   R + + I     G   + I   +  G    + G+ 
Sbjct: 171 DWDHMVAKVDNWLPRHHAETIRFELREIDRTIAGFVRGQATVCIVLAIFYGVGLTITGLD 230

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--DKTLR 297
             + +G+ T + A +P    +     S+ L +           +     +  V     L 
Sbjct: 231 LGLMIGLGTGLGAFVPYVGMLIGLIASVGLALAQGGEWHLLGGVGIVFLIGNVLEGNFLT 290

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           P LVG  + L  +   F L+ G    G +G+ +     ++I V+ +
Sbjct: 291 PKLVGDRVGLHPVWIIFSLLAGGALFGFVGILLAVPAASVIGVLTR 336


>gi|254284432|ref|ZP_04959400.1| permease [gamma proteobacterium NOR51-B]
 gi|219680635|gb|EED36984.1| permease [gamma proteobacterium NOR51-B]
          Length = 356

 Score = 97.2 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 55/338 (16%), Positives = 118/338 (34%), Gaps = 10/338 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             I ++  Y L     P +   ++G+   P+     ++    S  +A +  + ++ L  +
Sbjct: 17  FAIAVLLFYVLHPILMPFVVGGLLGYLGDPVVDRLEARGWSRSGGVAAVFVIFILGLSAI 76

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGI-PVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            L FL    + ++ +LV ++    Q        W       M  S +   ++   Q L  
Sbjct: 77  -LAFLIPMLLSQLDQLVRQIPEIYQWLAGDALPWFQS---KMSLSPVKLPNIDWEQELAA 132

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
             ++  K        R  +  G+       +I  + +  F+  RD   + +    L    
Sbjct: 133 NWQSLGKLITDTL--RRLTTSGIDVATILFNIALIPVVAFYLMRDWDRLMEATLDLIPRP 190

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +      +      V+ +   G  ++ + + L+      + G+   V LG    + ++IP
Sbjct: 191 WQENLSLMVAEADDVLGAFLRGQFLVMLAQALMYSVGLLIVGLDVAVVLGTAAGLASIIP 250

Query: 256 GGAPISFTA---VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
               +          +    G       + L   +   I    L P LVG  I L  +  
Sbjct: 251 YAGAVVGVGSSLAVAWFQFGGEWLPLIWVALVFGVGQTIESWFLTPLLVGDRIGLHPVAV 310

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            F L+ G +  G  G+ +   + A++ V  + +I   +
Sbjct: 311 IFALMAGGQVAGFTGVLVALPVAAVLLVFTRHAITHYR 348


>gi|228941775|ref|ZP_04104322.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974700|ref|ZP_04135266.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981294|ref|ZP_04141594.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           Bt407]
 gi|228778494|gb|EEM26761.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           Bt407]
 gi|228785103|gb|EEM33116.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228817987|gb|EEM64065.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 365

 Score = 97.2 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 56/347 (16%), Positives = 124/347 (35%), Gaps = 15/347 (4%)

Query: 14  WMIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
             ++   +   Y L    G   P + A    +   P+ +    K +       +++ + V
Sbjct: 6   IFVIVATVAGFYVLLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLILV 65

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
               +  + +L    +     L+  V +     +   +  +         +L +K     
Sbjct: 66  FGAIVGLVTYLVTEAISATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNHLG 125

Query: 131 QSLKILSETFLKTNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +  +      ++  G +           I    + F          ++F+++A FF   D
Sbjct: 126 EPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFILLATFFISYD 185

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              ++Q+   L  +    Y K I   + K +         +     +++     +  VP 
Sbjct: 186 WHRLAQKTRKLLPNRVHGYGKTIFVDLKKALFGFVKAQLTLVSMTTVIVLIGLLILRVPY 245

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            + + +IT ++ ++P  G    F    IY+   G+   A  L +   + + +  + + P 
Sbjct: 246 AITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVI-VQRQIMEPK 304

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           ++   I L  L T   L  G +  G LGL IGPV + L+  + K ++
Sbjct: 305 VLSSNIGLDPLATLVALFVGFKLFGFLGLIIGPVTLVLLNTLHKANV 351


>gi|42783773|ref|NP_981020.1| hypothetical protein BCE_4727 [Bacillus cereus ATCC 10987]
 gi|42739703|gb|AAS43628.1| membrane protein, putative [Bacillus cereus ATCC 10987]
          Length = 365

 Score = 96.8 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 54/335 (16%), Positives = 122/335 (36%), Gaps = 12/335 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           +L ++ G   P + A    +   P+ +    K +       +++ + V    +  + +L 
Sbjct: 18  ALLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLILVFGAIVGLVTYLV 77

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              +     L+  V +     +   +  +         +L +K     +  +      ++
Sbjct: 78  TEAISATTYLLQLVTVKFPDIVAFAQQFALNHIMPLYDDLISKFNHLGEPQRYTITQNIQ 137

Query: 143 TNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             G +           I    + F          ++F+++A FF   D   ++Q++    
Sbjct: 138 NLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFISYDWHRLAQKVRKFL 197

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            +    Y K I   + K +         +     +++     +  VP  + + +IT ++ 
Sbjct: 198 PNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRVPYAITIAIITGVVD 257

Query: 253 MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++P  G    F    IY+   G+   A  L +   + + +  + + P ++   I L  L 
Sbjct: 258 LLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVI-VQRQIMEPKVLSSNIGLDPLA 316

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           T   L  G +  G LGL IGPV + L+  + K  +
Sbjct: 317 TLIALFVGFKLFGFLGLIIGPVTLVLLNTLHKARV 351


>gi|27467958|ref|NP_764595.1| hypothetical protein SE1040 [Staphylococcus epidermidis ATCC 12228]
 gi|27315503|gb|AAO04637.1|AE016747_134 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
          Length = 409

 Score = 96.8 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 54/359 (15%), Positives = 132/359 (36%), Gaps = 18/359 (5%)

Query: 11  IMRWMIMFIILVSLYFLKGFF-------APVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           ++  +++FI     Y  + F        AP++ +L++ +   PI +     +        
Sbjct: 43  VLLGIVIFIFDKISYVFQPFIIVFNTIAAPIIVSLVLFYLFNPIVNMMERYRIPR----- 97

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
               + +  +++  +  +     L +  + S++    ++       ++     +  + + 
Sbjct: 98  ---LLGITIIYVAIIGIITLIVNLLIPIIGSQIESFIKNTPNYLHKITRSLDKLNNNTIL 154

Query: 124 TKHLSHPQSLKILSETFLKTNGIDF---IPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           + ++         ++  + +   D+        + F     +  + I      LFF  +D
Sbjct: 155 SGYMGQVNEWLESAQKKIPSMVSDYSDGFGSKLATFAEAVANIGIVIGTTPFVLFFMLKD 214

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G         +    F   +  +   +   + S   G  I++   GL+L   Y + G+  
Sbjct: 215 GHKFKDYTTKIMPPKFRKDFHDLLEKMSVQVGSYIQGQIIVSFCIGLLLFIGYSIIGLKY 274

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + L  I A+ +++P   P    + +I + I  +      L +   +  F     + P +
Sbjct: 275 ALVLASIAAVTSVVPYLGPTIAISPAIVIAIITSPLMLLKLAVVWTLVQFFEGHFISPNV 334

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +G  +K+  L   F L+     MG++G+ IG  L A++ V+     M  K    +   N
Sbjct: 335 MGKTLKIHPLTIIFILLCAGNLMGIVGVIIGIPLYAVLKVLVSHIFMLFKRRYNRYYGN 393


>gi|229081848|ref|ZP_04214340.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock4-2]
 gi|228701436|gb|EEL53930.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock4-2]
          Length = 365

 Score = 96.8 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 56/347 (16%), Positives = 124/347 (35%), Gaps = 15/347 (4%)

Query: 14  WMIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
             ++   +   Y L    G   P + A    +   P+ +    K +       +++ + V
Sbjct: 6   IFVIVATVAGFYVLLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLILV 65

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
               +  + +L    +     L+  V +     +   +  +         +L +K     
Sbjct: 66  FGAIVGLVTYLVTEAISATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNHLG 125

Query: 131 QSLKILSETFLKTNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +  +      ++  G +           I    + F          ++F+++A FF   D
Sbjct: 126 EPQRYTITQNIQNLGTEATTQMKELLTAIISVLTNFISALPTTLTVLVFILLATFFISYD 185

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              ++Q+   L  +    Y K I   + K +         +     +++     +  VP 
Sbjct: 186 WHRLAQKARKLLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRVPY 245

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            + + +IT ++ ++P  G    F    IY+   G+   A  L +   + + +  + + P 
Sbjct: 246 AITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVI-VQRQIMEPK 304

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           ++   I L  L T   L  G +  G LGL IGPV + L+  + K ++
Sbjct: 305 VLSSNIGLDPLATLVALFVGFKLFGFLGLIIGPVTLVLLNTLHKANV 351


>gi|229093693|ref|ZP_04224792.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock3-42]
 gi|228689578|gb|EEL43386.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock3-42]
          Length = 365

 Score = 96.8 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 55/335 (16%), Positives = 122/335 (36%), Gaps = 12/335 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           +L ++ G   P + A    +   PI +    K +       +++ + V    +  + +L 
Sbjct: 18  ALLYMSGLIYPFIIAFAFAYLINPIVNFLNQKLQFPRALAVLVSLILVFGAIVGLVTYLV 77

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              +     L+  V +     +   +  +         +L +K     +  +      ++
Sbjct: 78  TEAISATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNHLGEPQRYTITQNIQ 137

Query: 143 TNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             G +           I    + F          ++F+++A FF   D   ++Q++    
Sbjct: 138 NLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFISYDWHRLAQKVRKFL 197

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            +    Y K I   + K +         +     +++     +  VP  + + +IT ++ 
Sbjct: 198 PNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRVPYAITIAIITGVVD 257

Query: 253 MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++P  G    F    IY+   G+   A  L +   + + +  + + P ++   I L  L 
Sbjct: 258 LLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVI-VQRQIMEPKVLSSNIGLDPLA 316

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           T   L  G +  G LGL IGPV + L+  + K  +
Sbjct: 317 TLIALFVGFKLFGFLGLIIGPVTLVLLNTLHKARV 351


>gi|257879060|ref|ZP_05658713.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257881685|ref|ZP_05661338.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257890914|ref|ZP_05670567.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|258615305|ref|ZP_05713075.1| hypothetical protein EfaeD_06288 [Enterococcus faecium DO]
 gi|260558584|ref|ZP_05830780.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|257813288|gb|EEV42046.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257817343|gb|EEV44671.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257827274|gb|EEV53900.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|260075758|gb|EEW64064.1| conserved hypothetical protein [Enterococcus faecium C68]
          Length = 393

 Score = 96.8 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 55/332 (16%), Positives = 121/332 (36%), Gaps = 10/332 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +     P+L ALI+ +   P+          S     +I  V ++ L  +  ++L  + 
Sbjct: 50  IIATILPPLLFALILYYLLEPVIKRLSKHL--SRNLSVIIVYVIILFLLGLGSIWLIPFL 107

Query: 86  MLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
             + K L+S +  L       + ++L   P     ++ +         +      + ++ 
Sbjct: 108 EEQAKTLISSLPDLFQDFQESLRQFLEKTPFADSFNQFFASIDDVTSDIAGFIGNYWESG 167

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
                 +  S          +++    I  FF  RD     Q + ++    F   +K ++
Sbjct: 168 -----AQRISNIFSTVTAIFITLFTGPIVAFFLLRDPQKFYQSVLAIVPPAFRTDFKNLT 222

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
           +I  + + S   G  I +   G V    + L G+     L +   ++ +IP  G  I+F 
Sbjct: 223 KIANQQLGSFLKGQIIASFILGAVYWVCFLLIGLEFASVLAISAGLLCIIPYIGPFIAFF 282

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
              I             + +W A++L   D  + P ++G  +++  +     L+     M
Sbjct: 283 PGLIIAFQDSTFMAVKFVIVWFAVQLLHGDLVI-PRVMGDRLQIHPITILIVLLVMGDLM 341

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G++G+  G  +  L+ ++        K+   K
Sbjct: 342 GIVGVIFGIPIYTLVKLLVTFIFRKFKQRYNK 373


>gi|228954865|ref|ZP_04116885.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228960864|ref|ZP_04122497.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229048303|ref|ZP_04193871.1| Sporulation integral membrane protein YtvI [Bacillus cereus AH676]
 gi|229112062|ref|ZP_04241605.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock1-15]
 gi|229129880|ref|ZP_04258846.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           BDRD-Cer4]
 gi|229152791|ref|ZP_04280974.1| Sporulation integral membrane protein YtvI [Bacillus cereus m1550]
 gi|229180915|ref|ZP_04308250.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           172560W]
 gi|229192797|ref|ZP_04319755.1| Sporulation integral membrane protein YtvI [Bacillus cereus ATCC
           10876]
 gi|228590636|gb|EEK48497.1| Sporulation integral membrane protein YtvI [Bacillus cereus ATCC
           10876]
 gi|228602472|gb|EEK59958.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           172560W]
 gi|228630611|gb|EEK87257.1| Sporulation integral membrane protein YtvI [Bacillus cereus m1550]
 gi|228653571|gb|EEL09443.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           BDRD-Cer4]
 gi|228671385|gb|EEL26686.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock1-15]
 gi|228723028|gb|EEL74405.1| Sporulation integral membrane protein YtvI [Bacillus cereus AH676]
 gi|228798760|gb|EEM45740.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228804854|gb|EEM51453.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 365

 Score = 96.8 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 56/347 (16%), Positives = 124/347 (35%), Gaps = 15/347 (4%)

Query: 14  WMIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
             ++   +   Y L    G   P + A    +   P+ +    K +       +++ + V
Sbjct: 6   IFVIVATVAGFYVLLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLILV 65

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
               +  + +L    +     L+  V +     +   +  +         +L +K     
Sbjct: 66  FGAIVGLVTYLVTEAISATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNHLG 125

Query: 131 QSLKILSETFLKTNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +  +      ++  G +           I    + F          ++F+++A FF   D
Sbjct: 126 EPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFILLATFFISYD 185

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              ++Q+   L  +    Y K I   + K +         +     +++     +  VP 
Sbjct: 186 WHRLAQKARKLLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRVPY 245

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            + + +IT ++ ++P  G    F    IY+   G+   A  L +   + + +  + + P 
Sbjct: 246 AITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVI-VQRQIMEPK 304

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           ++   I L  L T   L  G +  G LGL IGPV + L+  + K ++
Sbjct: 305 VLSSNIGLDPLATLVALFVGFKLFGFLGLIIGPVTLVLLNTLHKANV 351


>gi|157150464|ref|YP_001450150.1| putative permease [Streptococcus gordonii str. Challis substr. CH1]
 gi|157075258|gb|ABV09941.1| putative permease [Streptococcus gordonii str. Challis substr. CH1]
          Length = 388

 Score = 96.8 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 123/338 (36%), Gaps = 11/338 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI    + F+     PV+ A ++ +   P+      +K            V++  +F+
Sbjct: 42  ISFIFTPIIEFISVIMLPVILAGLLYYLLNPLVDMMEKRKINR--------LVAITIVFV 93

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +  + L +   + +  L +++V   ++     +    I   +  S L  +     + +  
Sbjct: 94  LITVLLIWGLAVVIPNLQAQIVSFFRNMPSYLKQSKKIIDDLLDSRLSEEFRPQIEQVTE 153

Query: 136 LSETFLKTNGIDFIPR---FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
              + L T   +F  R   +AS F        +++I M   LF+  RDG ++   +    
Sbjct: 154 NISSQLTTWASNFSARAVNWASHFVSAASQVIVAVIIMPFILFYLLRDGKNLKGYITQFL 213

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                    ++   V   + +   G   +AI    +    + + G+   V L V+  ++ 
Sbjct: 214 PKKLREPVGQVLSDVNSQLANYVRGQITVAIIVAFMFMILFKIIGLRYGVTLAVVAGVLN 273

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++P          ++ L +         + +   +E  I  + + P ++G  + +  +  
Sbjct: 274 LVPYLGSFLAMLPALVLGLIAGPVMLLKVIIVFIVEQTIEGRFVSPLILGSQLSIHPITI 333

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            F L+      G+ G+ +G  + A   V+        K
Sbjct: 334 LFVLLTSGSMFGIWGVLLGIPVYASAKVVITAIFKWYK 371


>gi|228997824|ref|ZP_04157428.1| hypothetical protein bmyco0003_23950 [Bacillus mycoides Rock3-17]
 gi|228761956|gb|EEM10898.1| hypothetical protein bmyco0003_23950 [Bacillus mycoides Rock3-17]
          Length = 348

 Score = 96.8 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 50/330 (15%), Positives = 124/330 (37%), Gaps = 5/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P+L A+ + F   P+     +KK    +   ++  V ++ L  V +  +    
Sbjct: 22  FISTLFFPILIAMFLYFIFNPVLVFLEAKKVPR-SLAILLLYVFIITLAAVAIGVVVPTI 80

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +LV  +    + G     ++ ++        L T+     ++++  +  +LK   
Sbjct: 81  SQQLMDLVKNMPTYIKEG---KVYIQELSHHRLFEWLATQDYVSIETIEKNAIEYLKE-I 136

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + I   A+    I  +  L +  +   LF+ ++DG +   +  S     +     +I +
Sbjct: 137 PNTITSSATALFGIITNVALVVFTVPFILFYMFKDGHAFPGKAVSFLPESYREEGLRIIK 196

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              + + +   G  ++ +  G      Y +  +P    LG+I A   +IP   P    A 
Sbjct: 197 ETGETLSAYIQGQALVCLFVGAFTFIGYVIMDLPYAFVLGIIAAFTNIIPNLGPFIGAAP 256

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A  + +   I        + P ++   + +  L     ++G     G+
Sbjct: 257 AVIVGLFVSPMQAFWVIVIVTIVQQFESNIISPRIMSSKLNIHPLTIIVLILGVGNFAGI 316

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G+ +     A+   +    +   K  +  
Sbjct: 317 VGMILAVPAYAVTKTVVSNLVRLFKMKRNN 346


>gi|228917234|ref|ZP_04080791.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228929643|ref|ZP_04092661.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228948321|ref|ZP_04110604.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229124162|ref|ZP_04253354.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           95/8201]
 gi|228659464|gb|EEL15112.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           95/8201]
 gi|228811308|gb|EEM57646.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228830030|gb|EEM75649.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228842435|gb|EEM87526.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 365

 Score = 96.8 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 54/335 (16%), Positives = 122/335 (36%), Gaps = 12/335 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           +L ++ G   P + A    +   P+ +    K +       +++ + V    +  + +L 
Sbjct: 18  ALLYVSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLILVFGAIVGLVTYLV 77

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              +     L+  V +     +   +  +         +L +K     +  +      ++
Sbjct: 78  TEAISATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNHLGEPQRYTITQNIQ 137

Query: 143 TNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             G +           I    + F          ++F+++A FF   D   ++Q++    
Sbjct: 138 NLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFISYDWHRLAQKVRKFL 197

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            +    Y K I   + K +         +     +++     +  VP  + + +IT ++ 
Sbjct: 198 PNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRVPYAITIAIITGVVD 257

Query: 253 MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++P  G    F    IY+   G+   A  L +   + + +  + + P ++   I L  L 
Sbjct: 258 LLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVI-VQRQIMEPKVLSSNIGLDPLA 316

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           T   L  G +  G LGL IGPV + L+  + K  +
Sbjct: 317 TLIALFVGFKLFGFLGLIIGPVTLVLLNTLHKARV 351


>gi|229085673|ref|ZP_04217903.1| hypothetical protein bcere0022_22790 [Bacillus cereus Rock3-44]
 gi|228697630|gb|EEL50385.1| hypothetical protein bcere0022_22790 [Bacillus cereus Rock3-44]
          Length = 348

 Score = 96.8 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 50/330 (15%), Positives = 122/330 (36%), Gaps = 5/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P+L AL + F   P+     +KK    +   ++  V ++ L  V +  +    
Sbjct: 22  FISTLFFPILIALFLYFIFNPVLVFLEAKKVPR-SLAILLLYVFIITLAAVAIGVVVPTI 80

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +L   +    + G     ++ D+        L T+     ++++  +  +LK   
Sbjct: 81  SQQLMDLAKNMPTYIKEG---KIYIQDLSHHKLFEWLATQDYVSIETIEKNAIEYLKE-I 136

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + +   A+    I  +  L +  +   LF+ ++DG +   +  S     +      I +
Sbjct: 137 PNTVTSSATALFGIITNVALVVFTVPFILFYMFKDGHAFPGKAVSFLPESYREEGLHIIK 196

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              + + +   G  ++ +  G      Y +  +P    LG+I A   +IP   P    A 
Sbjct: 197 ETGETLSAYIQGQALVCLFIGAFTFIGYVIIDLPYAFVLGIIAAFTNIIPNLGPFIGAAP 256

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A  + +   I        + P ++   + +  L     ++G     G+
Sbjct: 257 AVIVALFVSPVQAAWVIVIVTIVQQFESNIISPRIMSSKLNIHPLTIIVLILGVGNFAGI 316

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G+ +     A+   +    +   K  +  
Sbjct: 317 VGMILAVPAYAVTKTVVSNLVRLFKMKRNN 346


>gi|149011739|ref|ZP_01832935.1| hypothetical protein CGSSp19BS75_07222 [Streptococcus pneumoniae
           SP19-BS75]
 gi|182684459|ref|YP_001836206.1| membrane protein [Streptococcus pneumoniae CGSP14]
 gi|303254157|ref|ZP_07340270.1| membrane protein [Streptococcus pneumoniae BS455]
 gi|303260727|ref|ZP_07346687.1| membrane protein [Streptococcus pneumoniae SP-BS293]
 gi|303263054|ref|ZP_07348986.1| membrane protein [Streptococcus pneumoniae SP14-BS292]
 gi|303264458|ref|ZP_07350378.1| membrane protein [Streptococcus pneumoniae BS397]
 gi|303267436|ref|ZP_07353290.1| membrane protein [Streptococcus pneumoniae BS457]
 gi|303269789|ref|ZP_07355538.1| membrane protein [Streptococcus pneumoniae BS458]
 gi|147764170|gb|EDK71102.1| hypothetical protein CGSSp19BS75_07222 [Streptococcus pneumoniae
           SP19-BS75]
 gi|182629793|gb|ACB90741.1| membrane protein [Streptococcus pneumoniae CGSP14]
 gi|302598883|gb|EFL65916.1| membrane protein [Streptococcus pneumoniae BS455]
 gi|302635817|gb|EFL66320.1| membrane protein [Streptococcus pneumoniae SP14-BS292]
 gi|302638130|gb|EFL68605.1| membrane protein [Streptococcus pneumoniae SP-BS293]
 gi|302640682|gb|EFL71080.1| membrane protein [Streptococcus pneumoniae BS458]
 gi|302643027|gb|EFL73320.1| membrane protein [Streptococcus pneumoniae BS457]
 gi|302646270|gb|EFL76497.1| membrane protein [Streptococcus pneumoniae BS397]
          Length = 388

 Score = 96.8 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 54/338 (15%), Positives = 120/338 (35%), Gaps = 11/338 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    L F+     PV+ + ++ +   PI       K            +++  +F+
Sbjct: 42  ISFLFSPVLDFIAVVMLPVILSGLLYYLLNPIVDWMEKHKVNR--------VIAITIVFV 93

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL---WTKHLSHPQS 132
           +  LF+ +   + +  L  +V+   ++       +  I  G+ A  L   +   L    +
Sbjct: 94  IIALFIIWGLAVAIPNLQRQVLTFARNVPVYLEDIDRIVNGLVAQHLPDDFRPQLEQVLT 153

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                 T L +        + S F        +++I +   LF+  RDG  +   L    
Sbjct: 154 NFSSQATVLASKVSSQAVNWVSAFISGASQVIVALIIVPFMLFYLLRDGKGLRNYLTQFI 213

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                    ++   V + + +   G   +AI   ++    + + G+   V LGV   I+ 
Sbjct: 214 PRKLKEPVGQVLSDVNQQLSNYVRGQVTVAIIVAVMFIIFFKIIGLRYAVTLGVTAGILN 273

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++P          ++ L +         + +   +E  I  + + P ++G  + +  +  
Sbjct: 274 LVPYLGSFLAMLPALVLGLIAGPVMLLKVVIVFIVEQTIEGRFVSPLILGSQLNIHPINV 333

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            F L+      G+ G+ +G  + A   V+        K
Sbjct: 334 LFVLLTSGSMFGIWGVLLGIPVYASAKVVISAIFEWYK 371


>gi|262282562|ref|ZP_06060330.1| membrane protein [Streptococcus sp. 2_1_36FAA]
 gi|262261853|gb|EEY80551.1| membrane protein [Streptococcus sp. 2_1_36FAA]
          Length = 388

 Score = 96.8 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 50/328 (15%), Positives = 119/328 (36%), Gaps = 11/328 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+     PV+ A ++ +   P+      +K            V++  +F++  + L +  
Sbjct: 52  FISVIMLPVILAGLLYYLLNPLVDMMEKRKINR--------LVAITIVFVLITVLLIWGL 103

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            + +  L +++V   ++     +    I   +  S L  +     + +     + L T  
Sbjct: 104 AVVIPNLQTQIVSFFRNMPAYLKQSKKIIDDLLDSRLSEEFRPQIEQVTDNISSQLTTWA 163

Query: 146 IDFIPR---FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            +F  R   +AS F        +++I M   LF+  RDG ++   +             +
Sbjct: 164 SNFSARAVNWASNFVSAASQVIVAVIIMPFILFYLLRDGKNLKGYVTQFLPKKLREPVGQ 223

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   V   + +   G   +AI    +    + + G+   V L V+  ++ ++P       
Sbjct: 224 VLSEVNSQLANYVRGQITVAIIVAFMFMILFKIIGLRYGVTLAVVAGVLNLVPYLGSFLA 283

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ L +         + +   +E  I  + + P ++G  + +  +   F L+     
Sbjct: 284 MLPALVLGLIAGPVMLLKVIIVFIVEQTIEGRFVSPLILGSQLSIHPITILFVLLTSGSM 343

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIK 350
            G+ G+ +G  + A   V+        K
Sbjct: 344 FGIWGVLLGIPVYASAKVVITAIFKWYK 371


>gi|119477091|ref|ZP_01617327.1| hypothetical protein GP2143_02174 [marine gamma proteobacterium
           HTCC2143]
 gi|119449454|gb|EAW30692.1| hypothetical protein GP2143_02174 [marine gamma proteobacterium
           HTCC2143]
          Length = 352

 Score = 96.8 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 48/351 (13%), Positives = 122/351 (34%), Gaps = 9/351 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M + Q +   ++  +I+     L+    P L A ++ +   P      ++     T    
Sbjct: 1   MNDKQRLWLLLVAVLIIALFLLLEPILTPFLVAGLLAYLGDPFADRLEAR-GMGRTVAVT 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA-NQHGIPVPRWLSDIPGGMWASELW 123
           +   +++ L I  ++        ++  L   +     Q  + +  WL         S   
Sbjct: 60  LVFSALILLLITAVVLTIPLIGRQLDLLAHAIPQWLEQLQLTLIPWLQKTLELPQGSLPI 119

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +  +   +  + + + L            +           +++ + +  F+  RD  +
Sbjct: 120 AEFKTAISNNWVTAGSMLGQLWGKIAGSSLAMIAG-----LANLVLIPVVTFYLLRDWDT 174

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +   +  L          K++    ++I +   G  ++ +  G++        G+   + 
Sbjct: 175 LMSHIRDLLPRSIEPTVVKLTNECDEIIGAFIRGQLLVMLALGILYSVGLGFVGLDLALI 234

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           LG+I  + +++P        A +          +     + L  A+   +    L P LV
Sbjct: 235 LGLIAGLASIVPYMGFFVGIAAASVAAWFQFHELMPLIGVALVFAVGQLLEGMVLTPLLV 294

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           G  I L  +   F ++ G +  G  G+ +     A+I V+ + +  + K++
Sbjct: 295 GDRIGLHPVAVIFAIMAGGQLAGFSGILLALPAAAIIMVLLRHAHRSYKDS 345


>gi|289550856|ref|YP_003471760.1| UPF0118 membrane protein YrrI [Staphylococcus lugdunensis HKU09-01]
 gi|289180388|gb|ADC87633.1| UPF0118 membrane protein YrrI [Staphylococcus lugdunensis HKU09-01]
          Length = 406

 Score = 96.8 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 57/352 (16%), Positives = 134/352 (38%), Gaps = 12/352 (3%)

Query: 11  IMRWMIMFIILVSLYFLKGFF-------APVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           ++  +++FI     Y  + F        AP++ +LI+ +   PI +  + +         
Sbjct: 40  VLLGIVIFIFDKVSYVFEPFIIVFNTIVAPIILSLILFYLINPIIN-LMERYNIPRLLGI 98

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           VI  ++++ L  + +  L      ++  L+                ++      + S  +
Sbjct: 99  VIVFLAIVGLIALIVNLLIPVIGSQVTRLIHNAPAYVTKFNDTLDKVTHF---SFLSSFY 155

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +  ++  SL     + + T+  D        F    ++  + +I     LFF  +DG  
Sbjct: 156 DQIQTNLDSLSKKIPSIV-TDYFDGFGTKLRTFAEAIVNVGVVLITTPFVLFFMLKDGHK 214

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
             +    +    F   +  +   +   + S   G  I++   G++L   Y + G+   + 
Sbjct: 215 FKEYTTKIMPPKFRKDYHDLLEKMSVQVGSYIQGQIIVSFCIGILLFIGYTIIGLDYSLI 274

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           L  I A+ +++P   P    + +I + +  +      L +   +  FI    + P ++G 
Sbjct: 275 LASIAAVTSVVPYLGPTIAISPAIIIALITSPLMLLKLAVVWTLVQFIEGHFISPNIMGK 334

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            +K+  L   F L+     +G++G+ +G    A++ V+     +  K    K
Sbjct: 335 TLKIHPLTIIFILLSAGNLLGIVGVILGIPAYAILKVLVSHIFLIFKRRYNK 386


>gi|329923748|ref|ZP_08279143.1| putative membrane protein [Paenibacillus sp. HGF5]
 gi|328941114|gb|EGG37416.1| putative membrane protein [Paenibacillus sp. HGF5]
          Length = 379

 Score = 96.8 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 49/327 (14%), Positives = 121/327 (37%), Gaps = 5/327 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +K    P++ + I+ +   P+      +K +   +  +I  + +  +  V +L +    
Sbjct: 50  LIKTIVLPIILSGILYYLLNPLVDMMEKRKIKR-GWSILILYLLIAGILTVVVLAVIPVL 108

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++  L+      ++        L+    G        + ++        + T   T  
Sbjct: 109 RTQIMSLIDNFPTYSEKVRQQFEELT----GSQLYSQLQEAVNINSQEWWGTITQKATEI 164

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           ++        F   F +  LSII +   LF+  +DG  + Q++ S       +    + +
Sbjct: 165 LNSTWSKVGGFLGAFTEIVLSIITVPFVLFYMLKDGKKLPQKILSFLPTQSRSGILHVLQ 224

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   I S   G  I+++  G++L   Y + G+   + L +I +  +++P   P      
Sbjct: 225 DINHQISSFIRGQIIVSVCIGILLYIGYMIIGLDYALILAIIASFTSVVPYLGPAIAITP 284

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +      +     I   I  K + P ++G  +K+  +   F ++      G+
Sbjct: 285 ALIVALVTSPVMLLKMVAVWTIVQLIEGKFISPQIMGKTLKIHPITIIFVILTAGNLFGV 344

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKEN 352
           +G+ +     A++ V         K  
Sbjct: 345 VGILLAVPGYAVLKVCVTHIFEWFKNT 371


>gi|146321353|ref|YP_001201064.1| permease [Streptococcus suis 98HAH33]
 gi|145692159|gb|ABP92664.1| Predicted permease [Streptococcus suis 98HAH33]
          Length = 391

 Score = 96.8 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 57/329 (17%), Positives = 124/329 (37%), Gaps = 13/329 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           FL+    P++   ++ +   P+       K           TV +  LF++  L + +  
Sbjct: 55  FLEIVLLPMILTGLLYYLLNPMVDWMEKHKISR--------TVGISILFVLISLLIIWGL 106

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            + +  +  +V    Q+     + +     G+   + + +       +       +    
Sbjct: 107 AVAIPSIQEQVTSFAQNLPSNIQKIEGQVTGLLQDQRFEQFRPTALEMLNKVNDQIVAYA 166

Query: 146 IDF---IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
             F      +AS          ++I+ M   LF+  RDG  +++ +       +      
Sbjct: 167 QKFSSSAVNWASNLISTASQIIVAILIMPFILFYLLRDGQYLNKHITQYLPTKWREPIGT 226

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
           +   V   + +   G   +AI   L+    + + G+   + LGV+   + +IP  G+ ++
Sbjct: 227 VLSDVNGQLSNYVRGQVTVAIIVALMFSVMFSIIGLSYPITLGVMAGFLNLIPYLGSFLA 286

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
                I  LI G I     + +   IE  I  + + P ++G  + +  +   F L+   +
Sbjct: 287 MIPAVILGLIAGPIML-IKVLVVFMIEQTIEGRFVTPLIIGSSLSIHPITILFVLLTAGQ 345

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             G+LG+F+G  + A I V+ K +    K
Sbjct: 346 MYGVLGVFLGIPIYASIKVLVKAAFEWYK 374


>gi|55980278|ref|YP_143575.1| hypothetical protein TTHA0309 [Thermus thermophilus HB8]
 gi|55771691|dbj|BAD70132.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 365

 Score = 96.8 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/333 (14%), Positives = 115/333 (34%), Gaps = 8/333 (2%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
               + +L+A    +   P+  +   ++   +  + ++  +  + L +    FL    ++
Sbjct: 34  WPALSVLLTAFAFAYLVHPLVQALERRRLPRAVGVVLVYLLLGLFLAL--ASFLAAQTVV 91

Query: 88  EMKELVSKVVLANQHG----IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
           E+  L   +           + +P     +P       +  +   + + L       L  
Sbjct: 92  ELSRLARDLPRLLDPLLAWLVALPDRAQAVPVPESLRPVLEELTRNLRGLLQGFLEALVR 151

Query: 144 NGIDFIPRFASRFG--MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                + +  S  G     L     +   +I   +F  D   + +   ++    +    +
Sbjct: 152 WLQGLLAQGGSLLGFFTSLLGGVFQLFTALILSAYFLYDLPRLGRAALAVFPEPYQPLAQ 211

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            ++  +   +     G  ++A+  G ++G  +WL GVP   +LG +  +  +IP    + 
Sbjct: 212 DLAAKLNASVGGYVRGQLLVALCVGFLVGLGFWLVGVPLAASLGFLAGVFNLIPFVGVVV 271

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               ++ L   G +  A    L       +    L P +VG   +L  +     ++ G  
Sbjct: 272 SGVPALLLAATGGLGKAALALLVMVAANQLEAHVLGPLIVGRATRLHPVTAIAAILTGGT 331

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             GL G  +     A + V+ ++     +  +E
Sbjct: 332 LFGLWGALLAVPAAAFLKVVLEDYYKGSRFYRE 364


>gi|168492574|ref|ZP_02716717.1| transport protein [Streptococcus pneumoniae CDC0288-04]
 gi|183573280|gb|EDT93808.1| transport protein [Streptococcus pneumoniae CDC0288-04]
          Length = 388

 Score = 96.8 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 55/338 (16%), Positives = 119/338 (35%), Gaps = 11/338 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    L FL     PV+ + ++ +   PI       K            +++  +F+
Sbjct: 42  ISFLFSPVLDFLAVVMLPVILSGLLYYLLNPIVDWMEKHKVNR--------VIAITIVFV 93

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL---WTKHLSHPQS 132
           +  LF+ +   + +  L  +V+   ++       +  I  G+ A  L   +   L    +
Sbjct: 94  ITALFIIWGLAVAIPNLQRQVLTFARNVPVYLEDIDRIVNGLVAQHLPDDFRPQLEQVLT 153

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                 T L +        + S F        +++I +   LF+  RDG  +   L    
Sbjct: 154 NFSSQATVLASKVSSQAVNWVSAFISGASQVIVALIIVPFMLFYLLRDGKGLRNYLTQFI 213

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                    ++   V + + +   G   +AI   ++    + + G+   V LGV   I+ 
Sbjct: 214 PRKLKEPVGQVLSDVNQQLSNYVRGQVTVAIIVAVMFIIFFKIIGLRYAVTLGVTAGILN 273

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++P          ++ L +         + +   +E  I  + + P ++G  + +  +  
Sbjct: 274 LVPYLGSFLAMLPALVLGLIAGPVMLLKVVIVFIVEQTIEGRFVSPLILGSQLNIHPINV 333

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            F L+      G+ G+ +G  + A   V         K
Sbjct: 334 LFVLLTSGSMFGIWGVLLGIPVYASAKVAISAIFEWYK 371


>gi|302876700|ref|YP_003845333.1| sporulation integral membrane protein YtvI [Clostridium
           cellulovorans 743B]
 gi|307687375|ref|ZP_07629821.1| sporulation integral membrane protein YtvI [Clostridium
           cellulovorans 743B]
 gi|302579557|gb|ADL53569.1| sporulation integral membrane protein YtvI [Clostridium
           cellulovorans 743B]
          Length = 371

 Score = 96.8 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 54/322 (16%), Positives = 118/322 (36%), Gaps = 5/322 (1%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
            + AP + ALI+     P         +      + I  + V+ +F   L  +    + E
Sbjct: 34  YYLAPFVVALILSLMIEPFVKFLGDTLKLKRAISSAIGVLMVLSVFGGLLALIISKLVRE 93

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           +  L   +    ++       +  I    +  +   K +S+  S    +     ++  + 
Sbjct: 94  LISLSDVLPDLIKNAY---ENIMAINSDSFFDKWLPKKISYDFSNITDTLYSSLSSFANP 150

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           + +          +  + +I M+I  +F       I   ++      + +   K    V 
Sbjct: 151 LAKGIFSTASALPNMFIFLIVMVIGTYFISSSKHDIINLINKHLPKTWLSSLNKSKDGVF 210

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSI 267
             +     G  II     + L   + + GV    AL +I ++  ++P  G+ +     +I
Sbjct: 211 SSLSRLLKGYLIILTITFIELLIGFNIIGVKYASALALIISVFDILPLIGSGLFLIPWAI 270

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           Y +I G       LF+   I + I+ + + P ++G  I L  L T   +  G   +G  G
Sbjct: 271 YSVITGATTLGIRLFILY-IVILIIRQLIEPKIIGAQIGLHPLATLISMYTGFSLLGGAG 329

Query: 328 LFIGPVLMALIAVIWKESIMAI 349
           +F+GP+++ +   +       +
Sbjct: 330 IFLGPIILLITKAVLSTIYRGL 351


>gi|253574904|ref|ZP_04852244.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251845950|gb|EES73958.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 341

 Score = 96.8 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 53/335 (15%), Positives = 117/335 (34%), Gaps = 13/335 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +  +   FLK  FAP + A+II +   PI      ++           T++V+ ++ V L
Sbjct: 18  MFALVYRFLKAVFAPFVIAIIISYVLNPIVRMLGGRRVPR--------TMAVLLIYAVFL 69

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
             L    M  +   V ++    +H   +      +        L         +     E
Sbjct: 70  TGLCVVLMNVIPMFVEQLEELGEHLPELTLHTQQMMNRWDNGILPGSIRMGMNNWFYQFE 129

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             L +    F+    +  G++F  + +  +      F+  +D   I + +          
Sbjct: 130 NRLASAISGFLDNIGTTIGVVFNAFIIPFLI-----FYMLKDIELIERLILQYLPRSRRK 184

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
               + + +   + +   G  ++ +  G++    Y L G+P  + L  + A+  +IP   
Sbjct: 185 SIITLLKEIDMALGNYVRGQLLVCVIIGVLAYIGYMLIGMPFALLLAGVVALCNIIPYLG 244

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P    A ++ +    +      + L   +   I    + P +VG  + +  +     L+ 
Sbjct: 245 PFLGAAPALVMATTISWKMVLLVLLVNMLCQTIESNVISPQVVGRSLHMHPMLIILALLI 304

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G    G+ GL +     A++ V+ +         K
Sbjct: 305 GGELAGVPGLILAVPFFAVVKVVIQHFYAYYVRRK 339


>gi|125624132|ref|YP_001032615.1| hypothetical protein llmg_1311 [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124492940|emb|CAL97903.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300070906|gb|ADJ60306.1| hypothetical protein LLNZ_06780 [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 390

 Score = 96.8 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/321 (14%), Positives = 116/321 (36%), Gaps = 8/321 (2%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           PV+ A +  +   PI      ++        V+  + +  +    + +     +  +   
Sbjct: 60  PVILAAVFYYLLNPIVDFLEKRRVPR-----VLTIIVLFLIIAALIAWGLIVAIPNVISG 114

Query: 93  VSKVVLANQHGIPVPR-WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           V     +  H +   +  ++ +       +   +     +S+      + KT  ++ +  
Sbjct: 115 VDNFASSVPHYVNTAQKEINALAKNPHFEQFRPQVDQFAKSIGNQLIDWSKTFSVNAVTT 174

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
             S          +S+I     LF+  RDG  ++  +  L  + +     K+   +   +
Sbjct: 175 L-SHLISKTTSILISLIVFPFVLFYLLRDGQRLNGFITHLLPNDWRKETSKVLHEINSQL 233

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLL 270
            +   G  ++AI   ++      + G+   VAL +    + ++P  G+ ++   + I  L
Sbjct: 234 SNYVRGQVLVAIAVAIMFMIGLPIIGLRYAVALAITAGFLNLVPFLGSFLAAIPMVIVGL 293

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             G       + +   IE  +  + + P ++G  + +  +   F L+   + +G+ G+ +
Sbjct: 294 AIGGPLMLVKVIIVLIIEQTLEGRFISPLVLGKQMSIHPITILFVLLTAGQILGVWGVLL 353

Query: 331 GPVLMALIAVIWKESIMAIKE 351
                A + VI        +E
Sbjct: 354 AIPFYATLKVIIVHVYEWYRE 374


>gi|315645819|ref|ZP_07898940.1| hypothetical protein PVOR_10134 [Paenibacillus vortex V453]
 gi|315278580|gb|EFU41894.1| hypothetical protein PVOR_10134 [Paenibacillus vortex V453]
          Length = 355

 Score = 96.8 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 56/340 (16%), Positives = 125/340 (36%), Gaps = 13/340 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           W++  + L    FLK   AP L A+II +   P+      +K   S        ++V+ +
Sbjct: 27  WLLRPLFLDVYRFLKAVLAPFLVAMIISYVLNPVVCMLSDRKVPRS--------MAVLII 78

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           + V L  L    +  +  L+ ++   N+H   +      +   + +  L     +   S 
Sbjct: 79  YAVFLTSLAVILINMIPMLIRQLEELNEHLPELTMNAQSLMTNLDSRLLPPGVRTGMNSW 138

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
               E+ L      F+           ++   +++ +   +F+  +D     +   S   
Sbjct: 139 FFQMESRLAGGITAFMDNIG-----NTINILFNVLIVPFLIFYILKDFEVFQRTAVSYLP 193

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                    + + +   + +   G  ++ +  G++    Y + G+P  + L  I A+  +
Sbjct: 194 RSHRKSIVMLLKEIDTALGNYVRGQFLVCLIIGVLAYVGYIIVGMPYALLLASIVAVFNI 253

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P    A ++ +    +      + +   I   +    + P +VG  + +  L   
Sbjct: 254 IPYLGPFLGAAPALVMASTISWKMVLLVVVVNMICQTLESNVISPQVVGKKLHMHPLLII 313

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           F L+ G +  G +GL +   + A+I V+ +         K
Sbjct: 314 FALLVGGQLAGTVGLILAVPVFAVIKVLLQHFFAYYVRRK 353


>gi|303238702|ref|ZP_07325235.1| cyclic nucleotide-binding protein [Acetivibrio cellulolyticus CD2]
 gi|302593821|gb|EFL63536.1| cyclic nucleotide-binding protein [Acetivibrio cellulolyticus CD2]
          Length = 349

 Score = 96.8 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 56/350 (16%), Positives = 134/350 (38%), Gaps = 12/350 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEESS 59
             + I+  ++  ++ VS+ F+  +       F P + A++I +   P+     +KK + S
Sbjct: 4   KRKTILYSLLFLMLAVSVAFIYYYRGKIGKVFIPFIMAIVISYLLHPLVIKLENKKIKRS 63

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
                I  + +  +F + L  L  + + ++     +++          R   +    + +
Sbjct: 64  -----IGIILIYLIFGISLAVLTIFVVPQLINNTRELINILPGITMEYRNNFNGMVNIIS 118

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           +  W   +      +I +   +  N I  + +      M  +     +I  +I  ++  +
Sbjct: 119 ASKWPDDIKSAIFREINNGAQVAENTIIVMLKNTLSGLMKTVSTAFDLILSMIIAYYILK 178

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D         SL    +        R +  V+ +   G  + A+  G++      +  V 
Sbjct: 179 DAEYFKNVSLSLVPRKWRNGIIGACREINGVLSNFIQGQILTALIVGILESIGLMIVRVK 238

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             + LG+I  I  +IP   P      ++ + +  +   A    +   I   + +  + P 
Sbjct: 239 YPLILGMIGGIANIIPYFGPFIGAIPAVAVALIESPMKAVLTIIVFVIIQQLDNGFISPK 298

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           ++ G + L  + T   ++ G    G++G+ +   + A+I VI K +I +I
Sbjct: 299 IIEGRVGLHPVTTILAVLIGGEFFGIIGMLVSVPIAAMIKVIGKRTIESI 348


>gi|317128236|ref|YP_004094518.1| hypothetical protein Bcell_1524 [Bacillus cellulosilyticus DSM
           2522]
 gi|315473184|gb|ADU29787.1| protein of unknown function UPF0118 [Bacillus cellulosilyticus DSM
           2522]
          Length = 358

 Score = 96.8 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 128/326 (39%), Gaps = 17/326 (5%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L A +I +   P+  +   K+    +   ++   + + LF++ L     Y + E +
Sbjct: 43  ITPFLLAAVIAYLLHPLIEAL-KKRNIPKSLSILLIYAAFVILFVIVLFRGTPYILEEGQ 101

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           EL+ ++ +  Q                +A+ +  +    P + +   E ++  +G  +I 
Sbjct: 102 ELLDQLPVMAQTYTD------------FANTIHAQTEVLPSTFQEQVEGWM-ESGEAYIA 148

Query: 151 RFASRFGMI---FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
              +  G+I     D+ L +I +   +F+  +D   + +    +    +      + + +
Sbjct: 149 ESITSIGLIIRQLFDWMLLLIVIPFIVFYLLKDMDLVKKVCWYITPDRWRKEGASLVKEI 208

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
              + +   G  ++ I  G++    +W+  +P  V L V   +  +IP   PI      +
Sbjct: 209 DHSLGNYIRGQILVCIVVGILAYIGFWIIDMPYAVLLAVFIGLTNIIPYFGPIIGVIPVV 268

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           ++ +  +        +   I   I    + P +VG  + +  +   F LV G    G++G
Sbjct: 269 FIALTESFQLVILGLIVNFIVQIIEGNLIAPLIVGKTLHMHPVLIIFALVVGGELGGVIG 328

Query: 328 LFIGPVLMALIAVIWKESIMAIKENK 353
           L I   ++ ++ VI       ++E K
Sbjct: 329 LIISVPILTVLRVILLHIRQIVRERK 354


>gi|255037761|ref|YP_003088382.1| hypothetical protein Dfer_4013 [Dyadobacter fermentans DSM 18053]
 gi|254950517|gb|ACT95217.1| protein of unknown function UPF0118 [Dyadobacter fermentans DSM
           18053]
          Length = 389

 Score = 96.4 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 43/337 (12%), Positives = 121/337 (35%), Gaps = 16/337 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +     + +   +  LY L+    P+  ++++     P+ +    ++       A++ ++
Sbjct: 4   KLASTLVALIATVYILYILRETLIPLAFSILLAILLHPVCAWLELRRVPR--IGAILLSI 61

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +   IV L++L    +    E + ++    +  +                 L  ++L+
Sbjct: 62  LALFTAIVILVYLVSMQVGSFAEELPRITEKAEAILD------------QTLTLGERYLN 109

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             ++ ++        N +     F     +       + + + + +FFF          +
Sbjct: 110 ISRTQQVSEAQKYLINALSEGRAFLLNTLVTTTGAISTFVLIPLYIFFFLLYRDFFRMFV 169

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 +       + + + +VI+S   G+ ++ +  G++      + G+P  +  G + 
Sbjct: 170 HKAIRRVPNEELNVLLKKIYEVIQSYLSGLFLVILIVGVLNSIGLLILGIPHAIFFGFLA 229

Query: 249 AIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + +IP    +        + ++   + + A  +    +   F+    + P +VG  + 
Sbjct: 230 GFLILIPYIGILIGSVLPALLSIVTMDSPWYAVGVIGVMSFVQFLEGNFITPNIVGSKVS 289

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +  L     L  G +  GL GL +   + A++ VI  
Sbjct: 290 VNPLAAIVALFLGGQLWGLSGLILALPVTAILKVILD 326


>gi|22537352|ref|NP_688203.1| hypothetical protein SAG1194 [Streptococcus agalactiae 2603V/R]
 gi|22534224|gb|AAN00076.1|AE014246_11 membrane protein, putative [Streptococcus agalactiae 2603V/R]
          Length = 396

 Score = 96.4 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 131/360 (36%), Gaps = 18/360 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYF----------LKGFFAPVLSALIIGFTSWPIYS---SF 51
           +LN Q ++  MI F++ ++++           +  F A ++  L+I    + +     +F
Sbjct: 18  ILNNQAVIALMITFLVFLTIFIFTKISFMFKPVFDFLAVLILPLVISGLLYYLLKPMVTF 77

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWL 110
           + K+        +     ++ L I  +         +++  +  +    N+  +    ++
Sbjct: 78  LEKRGIKRVTAILSVFTIIILLLIWAMSSFIPMMSNQLRHFMEDLPSYVNKVQMETSSFI 137

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
              P         +  LS+  S  +        N +D+    AS    +     ++ I  
Sbjct: 138 DHNPWLKSYKGEISSMLSNISSQAVSYAEKFSKNILDWAGNLASTVARVT----VATIMA 193

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
              LF+  RD  ++      +          +I R +   +     G  I+AI  G++  
Sbjct: 194 PFILFYLLRDSRNMKNGFLMVLPTKLRQPTDRILREMNSQMSGYVQGQIIVAITVGVIFS 253

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
             Y + G+   V LG+I  ++ M+P             L +         + +   IE  
Sbjct: 254 IMYSIIGLRYGVTLGIIAGVLNMVPYLGSFVAQIPVFILALVAGPVMVVKVAIVFVIEQT 313

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +  + + P ++G  + +  +   F L+      G+ G+F+   + A I V+ KE     K
Sbjct: 314 LEGRFVSPLVLGNKLSIHPITIMFILLTSGAMFGVWGVFLSIPIYASIKVVVKELFDWYK 373


>gi|315658357|ref|ZP_07911229.1| YubA like protein [Staphylococcus lugdunensis M23590]
 gi|315496686|gb|EFU85009.1| YubA like protein [Staphylococcus lugdunensis M23590]
          Length = 407

 Score = 96.4 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 57/352 (16%), Positives = 134/352 (38%), Gaps = 12/352 (3%)

Query: 11  IMRWMIMFIILVSLYFLKGFF-------APVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           ++  +++FI     Y  + F        AP++ +LI+ +   PI +  + +         
Sbjct: 41  VLLGIVIFIFDKVSYVFEPFIIVFNTIVAPIILSLILFYLINPIIN-LMERYNIPRLLGI 99

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           VI  ++++ L  + +  L      ++  L+                ++      + S  +
Sbjct: 100 VIVFLAIVGLIALIVNLLIPVIGSQVTRLIHNAPAYVTKFNDTLDKVTHF---SFLSSFY 156

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +  ++  SL     + + T+  D        F    ++  + +I     LFF  +DG  
Sbjct: 157 DQIQTNLDSLSKKIPSIV-TDYFDGFGTKLRTFAEAIVNVGVVLITTPFVLFFMLKDGHK 215

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
             +    +    F   +  +   +   + S   G  I++   G++L   Y + G+   + 
Sbjct: 216 FKEYTTKIMPPKFRKDYHDLLEKMSVQVGSYIQGQIIVSFCIGILLFIGYTIIGLDYSLI 275

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           L  I A+ +++P   P    + +I + +  +      L +   +  FI    + P ++G 
Sbjct: 276 LASIAAVTSVVPYLGPTIAISPAIIIALITSPLMLLKLAVVWTLVQFIEGHFISPNIMGK 335

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            +K+  L   F L+     +G++G+ +G    A++ V+     +  K    K
Sbjct: 336 TLKIHPLTIIFILLSAGNLLGIVGVILGIPAYAILKVLVSHIFLIFKRRYNK 387


>gi|311069680|ref|YP_003974603.1| putative integral inner membrane protein [Bacillus atrophaeus 1942]
 gi|310870197|gb|ADP33672.1| putative integral inner membrane protein [Bacillus atrophaeus 1942]
          Length = 368

 Score = 96.4 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 51/312 (16%), Positives = 118/312 (37%), Gaps = 6/312 (1%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P+L A I+ F   P+      K     T   ++  +  + L +     +      ++ 
Sbjct: 41  FFPILIAGILFFIFNPVVRLLEKKIP--RTLSILLIYLLFIGLLVFVFATVGPILTSQIS 98

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L   +    +    +    +D+    W + +  +       ++    +FL++   +   
Sbjct: 99  GLFGNLPEYIKQIQGLT---NDLSHSQWFTWMMNQDYVSISKIEQSLTSFLQSLPQNITS 155

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
             ++ FG++  +  L II +   LF+  +DG         +    +     KI + +   
Sbjct: 156 SLSAVFGVVT-NITLVIITVPFILFYMLKDGHRFPHLAVKILPASYRTEGMKIFKDLYDT 214

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + + F G  +I +  G      Y + G+P  + LG++ A+  +IP   P    A ++ + 
Sbjct: 215 LAAYFQGQLLICLFVGTACFIGYSIIGLPYALILGLVMAVTNIIPYVGPFLGAAPAVIIG 274

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +  +   A    +   +   +    L P ++G  +    L     L+G     G+LG+ +
Sbjct: 275 LMDSPARALFAIIVVVVVQQLDGNLLSPLVIGKRLNTHPLTIILLLIGAGSFGGILGMIL 334

Query: 331 GPVLMALIAVIW 342
              + A++   +
Sbjct: 335 AVPVYAVLKAFF 346


>gi|77405418|ref|ZP_00782512.1| membrane protein, putative [Streptococcus agalactiae H36B]
 gi|77176000|gb|EAO78775.1| membrane protein, putative [Streptococcus agalactiae H36B]
          Length = 396

 Score = 96.4 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 131/360 (36%), Gaps = 18/360 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYF----------LKGFFAPVLSALIIGFTSWPIYS---SF 51
           +LN Q ++  MI F++ ++++           +  F A ++  L+I    + +     +F
Sbjct: 18  ILNNQAVIALMITFLVFLTIFIFTKISFMFKPVFDFLAVLILPLVISGLLYYLLKPMVTF 77

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWL 110
           + K+        +     ++ L I  +         +++  +  +    N+  +    ++
Sbjct: 78  LEKRGIKRVTAILSVFTIIILLLIWAMSSFIPMMSNQLRHFMEDLPSYVNKVQMETSSFI 137

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
              P         +  LS+  S  +        N +D+    AS    +     ++ I  
Sbjct: 138 DHNPWLKSYKGEISSMLSNISSQAVSYAEKFSKNVLDWAGNLASTVARVT----VATIMA 193

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
              LF+  RD  ++      +          +I R +   +     G  I+AI  G++  
Sbjct: 194 PFILFYLLRDSRNMKNGFLMVLPTKLRQPTDRILREMNSQMSGYVQGQIIVAITVGVIFS 253

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
             Y + G+   V LG+I  ++ M+P             L +         + +   IE  
Sbjct: 254 IMYSIIGLRYGVTLGIIAGVLNMVPYLGSFVAQIPVFILALVAGPVMVVKVAIVFVIEQT 313

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +  + + P ++G  + +  +   F L+      G+ G+F+   + A I V+ KE     K
Sbjct: 314 LEGRFVSPLVLGNKLSIHPITIMFILLTSGAMFGVWGVFLSIPIYASIKVVVKELFDWYK 373


>gi|213965467|ref|ZP_03393662.1| putative membrane protein [Corynebacterium amycolatum SK46]
 gi|213951851|gb|EEB63238.1| putative membrane protein [Corynebacterium amycolatum SK46]
          Length = 516

 Score = 96.4 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 48/307 (15%), Positives = 99/307 (32%), Gaps = 22/307 (7%)

Query: 14  WMIMFIILVSLYFLKGFFA--------PVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           W + F+I  +  ++             P+L ALI+     P     +  +   +   A+ 
Sbjct: 86  WCLRFLITAAALYVSAMILGKIWAGVLPILLALIVSTVLAPPAVFLMKHRWPRA-LAALT 144

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + +    + FL      +  EL  +     Q    V   +   P  +   ++   
Sbjct: 145 VILGAVAVLGGVVAFLAPTVQSQFPELRRQFTDGIQE---VQNIIQAPPFNVKDEQILDA 201

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                Q L+  S           I     +   +     ++++ M++  FFF +DG    
Sbjct: 202 LDQGSQWLQERSGD---------IANTVFQGISVVSSVAVTLMAMLVLTFFFIKDGQDFL 252

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L  L       +  ++       +        I+++ + + +G+   +  VP  + L 
Sbjct: 253 PWLRRLTGRRLGWHLTEVLTRSWNTLSGYIRTQAIVSLIDAVFIGAGLAILNVPLAMVLA 312

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           V+T     IP  GA  +     +  L+   +  A  + L       I    L P L    
Sbjct: 313 VVTFFAGFIPIVGAFTAGFIAVVVALVANGLTTAIFVLLIIIAVQQIEGNILSPILQSKA 372

Query: 305 IKLPFLP 311
           + L    
Sbjct: 373 MDLHAAI 379


>gi|325568437|ref|ZP_08144804.1| permease [Enterococcus casseliflavus ATCC 12755]
 gi|325158206|gb|EGC70359.1| permease [Enterococcus casseliflavus ATCC 12755]
          Length = 393

 Score = 96.4 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 50/330 (15%), Positives = 116/330 (35%), Gaps = 11/330 (3%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P++ A I+ +   P       K      +      V V+ L +  ++ +      +    
Sbjct: 58  PIILAGILYYLMNPTVDYLERK-GIKRIYSIFGLFVLVVGLIVWGVVVIIPKIQEQSMSF 116

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
              +         +   +++I      S++  +  +  + L       ++      I   
Sbjct: 117 ADNLPGYLTI---IENKVNEILSDPIFSQVQDQIEASNEKLISSLTDIVQNLSRSTIQNL 173

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
            S FG +     L++I M   LF+  +DG  ++                 + + +   + 
Sbjct: 174 GSFFGAVAT-IVLAVITMPFILFYLLKDGRKLAPYFVKFLPTKMRQPSLIVLKEMNDQVS 232

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
           S   G   +A    ++    + + G+   + LG+    + +IP          +++L I 
Sbjct: 233 SYIRGQLTVAFAVAVMFMIGFSIIGLDYAITLGIAAGFLNLIPYLGSFLAMIPAVFLGIV 292

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
           G       + +   IE  I  + + P ++G  + +  +     L+   +  GL+G+ +G 
Sbjct: 293 GGPVLLIQVLIVFVIEQTIEGRLISPLVLGNELSIHPVTILLVLLTSGKLFGLVGVILGI 352

Query: 333 VLMALIAVI------WKESIMAIKENKEKI 356
            + A   VI      W   + ++ E +E I
Sbjct: 353 PVYAAAKVIITHVFEWYTRVSSLYEEEEPI 382


>gi|227551099|ref|ZP_03981148.1| permease [Enterococcus faecium TX1330]
 gi|257888973|ref|ZP_05668626.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257896721|ref|ZP_05676374.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|293378639|ref|ZP_06624799.1| putative membrane protein [Enterococcus faecium PC4.1]
 gi|293572911|ref|ZP_06683861.1| hypothetical protein EfmE980_2615 [Enterococcus faecium E980]
 gi|227179760|gb|EEI60732.1| permease [Enterococcus faecium TX1330]
 gi|257825029|gb|EEV51959.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257833286|gb|EEV59707.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|291607039|gb|EFF36411.1| hypothetical protein EfmE980_2615 [Enterococcus faecium E980]
 gi|292642770|gb|EFF60920.1| putative membrane protein [Enterococcus faecium PC4.1]
          Length = 393

 Score = 96.4 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 55/332 (16%), Positives = 122/332 (36%), Gaps = 10/332 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +     P+L ALI+ +   P+          S     +I  V ++ L  +  ++L  + 
Sbjct: 50  IIATILPPLLFALILYYLLEPVIKRLSKHL--SRNLSVIIVYVIILFLLGLGSVWLVPFL 107

Query: 86  MLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
             + K L+S +  L       + ++L   P     ++ +T        +      + ++ 
Sbjct: 108 EEQTKTLISSLPDLFQDFQESLRQFLEKTPFADSFNQFFTSIDDVTSDIAGFIGNYWESG 167

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
                 +  S          +++    I  FF  R+     Q + ++    F   +K ++
Sbjct: 168 -----AQRISNIFSTVTAIFITLFTGPIVTFFLLRNPQKFYQSVLAIVPPAFRTDFKNLT 222

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
           +I  + + S   G  I +   G V    + L G+     L +   ++ +IP  G  I+F 
Sbjct: 223 KIANQQLGSFLKGQIIASFILGAVYWVCFLLIGLEFASVLAISAGLLCIIPYIGPFIAFF 282

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
              I             + +W A++L   D  + P ++G  +++  +     L+     M
Sbjct: 283 PGLIIAFQDSTFMAVKFVIVWFAVQLLHGDLVI-PRVMGDRLQIHPITILIVLLVMGDLM 341

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G++G+  G  +  L+ ++        K+   K
Sbjct: 342 GIVGVIFGIPIYTLVKLLVTFIFRKFKQRYNK 373


>gi|292656983|ref|YP_003536880.1| Htr-like protein [Haloferax volcanii DS2]
 gi|291372863|gb|ADE05090.1| Htr-like protein [Haloferax volcanii DS2]
          Length = 433

 Score = 96.4 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 62/366 (16%), Positives = 126/366 (34%), Gaps = 26/366 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSL-YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M    +     M W +  ++  +L Y +  F    +  L I + + PIY     + +  S
Sbjct: 1   MALPDIQRSRAMWWSLALVLAGALTYVVYSFIGTFVFGLFIYYATRPIYWRIRRRVKPPS 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
              AV      + +    L  + Y   + ++E +      +   +P+      I   +  
Sbjct: 61  LAAAVALFALALPV----LGLVVYAATIALREFLRYADRLSTDEVPIDLEAYGIDPTLLE 116

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                + L       +L+   L +         A+          + +  MI   F+  R
Sbjct: 117 GIASPQALLEYDFRSVLTPEALGSVFDSL--SVAANTFAFLGVGAIHLFVMIAFAFYLLR 174

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG-- 237
           DG  + +   S+         +   R V +   + F G  + AI  G +   AY L    
Sbjct: 175 DGHRLRRWGQSMFADDHGIL-EAYMRGVDRDFNNIFFGNILNAILTGTIGVIAYSLLNVL 233

Query: 238 ------VPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIK-------GNIFNATCLFL 283
                 +P+   +G++  + ++IP  G  + +  ++ Y+ ++       G  F      +
Sbjct: 234 APAGVRIPAPALIGLLAGVASLIPVVGMKLVYVPIAGYMGLEAAIANPPGLWFVLLFAAV 293

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              I   I D  LRP++ G    L           G    G  G+F+ P+++ L     +
Sbjct: 294 SFVIVDTIPDLVLRPYVSGRS--LHVGAVMLAYTFGPLLFGWYGIFLMPMILVLFVNFAR 351

Query: 344 ESIMAI 349
             +  +
Sbjct: 352 LVLPEL 357


>gi|116512078|ref|YP_809294.1| permease [Lactococcus lactis subsp. cremoris SK11]
 gi|116107732|gb|ABJ72872.1| Predicted permease [Lactococcus lactis subsp. cremoris SK11]
          Length = 390

 Score = 96.4 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 45/321 (14%), Positives = 116/321 (36%), Gaps = 8/321 (2%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           PV+ A +  +   PI      ++        V+  + +  +    + +     +  +   
Sbjct: 60  PVILAAVFYYLLNPIVDFLEKRRVPR-----VLTIIVLFLIIAALIAWGLIVAIPNVISG 114

Query: 93  VSKVVLANQHGIPVPR-WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           V     +  H +   +  ++ +       +   +     +S+      + KT  ++ +  
Sbjct: 115 VDNFASSVPHYVNTAQKEINALAKNPHFEQFRPQVDQFAKSIGNQLIDWSKTFSVNAVTT 174

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
             S          +S+I     LF+  RDG  ++  +  L  + +     K+   +   +
Sbjct: 175 L-SHLISKTTSILISLIVFPFVLFYLLRDGQRLNGFVTHLLPNDWRKETSKVLHEINSQL 233

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLL 270
            +   G  ++AI   ++      + G+   VAL +    + ++P  G+ ++   + I  L
Sbjct: 234 SNYVRGQVLVAIAVAIMFMIGLPIIGLRYAVALAITAGFLNLVPFLGSFLAAIPMVIVGL 293

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             G       + +   IE  +  + + P ++G  + +  +   F L+   + +G+ G+ +
Sbjct: 294 AIGGPLMLVKVIIVLIIEQTLEGRFISPLVLGKQMSIHPITILFVLLTAGQILGVWGVLL 353

Query: 331 GPVLMALIAVIWKESIMAIKE 351
                A + VI        +E
Sbjct: 354 AIPFYATLKVIIVHVYEWYRE 374


>gi|322372869|ref|ZP_08047405.1| membrane protein [Streptococcus sp. C150]
 gi|321277911|gb|EFX54980.1| membrane protein [Streptococcus sp. C150]
          Length = 392

 Score = 96.4 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 55/360 (15%), Positives = 132/360 (36%), Gaps = 19/360 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYF----------LKGFFAPVLSALIIGFTSWPI---YSSF 51
           +LN Q ++ ++I+ +I +++            +  F   ++  L+I    + +       
Sbjct: 18  VLNNQAVVAFLILLLIGLTVLIFTKISPIFSPVIDFLTIIMLPLVISTLLYYLIKPLVLL 77

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS 111
           + K   S T   ++    +  L ++ +         ++  L+                  
Sbjct: 78  VEKTGLSRTMSILVIYAILALLLVLGISTAIPSLQNQILILIRNTPSYIARANSEAERWL 137

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
           ++P            LS   +  +       ++ + ++  FAS    +     ++II   
Sbjct: 138 NLPFLSNYRGDLEAMLSDFSARMVNYAENFSSSALTWVGTFASTVARVT----VAIILAP 193

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
             LF+  RD   + Q   S+    F     ++   +   +     G   +AI   ++   
Sbjct: 194 FILFYLLRDSQKMKQGFVSVLPTRFRETTVRMLSDINNQLEGYVQGQVTVAIVVAIMFCI 253

Query: 232 AYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
            + + G+   V  G++   + M+P  G+ ++   V I  L++G       + +   IE  
Sbjct: 254 MFKIVGLRYGVTFGIMAGFLNMVPYLGSFLAMVPVVIMGLVQG-PAMLIKVLIIFVIEQT 312

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           I  + + P ++G  + +  +   F L+      G+ G+ +G  + A + V+ KE     +
Sbjct: 313 IEGRFVSPLVLGNKLSIHPITIMFILLTAGSLYGVWGVLLGIPIYASVKVVVKEIFDWYR 372


>gi|253577604|ref|ZP_04854915.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251843022|gb|EES71059.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 362

 Score = 96.4 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 126/343 (36%), Gaps = 12/343 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFF-------APVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +G    +I+  I+     ++ FF         +L  L++    + +    +   E+    
Sbjct: 12  RGAKFVLILLAIVYVFSLVRPFFRPMEAVIGALLIPLLLSGFFYYLLRPVVQYMEKHKIR 71

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            ++   +  + + I+ + F+     +   +L++ V    Q    +   L +     + + 
Sbjct: 72  RSLAILILYVVMAILAMAFIAVVWPMLQAQLINLVQNIPQFISLLEERLKEWGELPFLAS 131

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           ++        +          + GI F+  + S F      + + +    I L++  ++G
Sbjct: 132 IFPSDSGLADNFSEYL-----SQGISFLTNYLSGFFSFLSQFAIVMFTFPILLYYMLKEG 186

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               + L  L    +     + +  + K +    +G  I+    G+++   + + G+P  
Sbjct: 187 HRFKRSLVKLSPIRYRKEVYRATIEMDKALNDYIIGRVIVNAALGVLMFIGFLIIGLPYA 246

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           + L  I  IM  IP    I      + + +  +        +   +   I D  + P++ 
Sbjct: 247 LLLTTIAVIMNFIPLFGAIISAIPIVIIGLIESPSTGIWALVIILLAQQIQDNVISPYVF 306

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           G  + +  + T   ++G     G++G+ I   +  L+ + WK 
Sbjct: 307 GKKLDIHPVTTILLVLGSGNWFGIIGMLIVIPVYMLLKIAWKR 349


>gi|261855341|ref|YP_003262624.1| hypothetical protein Hneap_0728 [Halothiobacillus neapolitanus c2]
 gi|261835810|gb|ACX95577.1| protein of unknown function UPF0118 [Halothiobacillus neapolitanus
           c2]
          Length = 363

 Score = 96.4 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 45/339 (13%), Positives = 123/339 (36%), Gaps = 10/339 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + + +  +Y L     P L+ +++ +   P+ +  +  K           T+    +F V
Sbjct: 9   LALAMYIVYLLSPILTPFLAGVVLAYLFDPLVTRMVGWKINR--------TLGTTVVFFV 60

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            LL +   G+  +  ++++ V        +   L D       ++L      +  +   +
Sbjct: 61  ILLVMILAGLALVPVVINQAVKLISVFPKLLAMLQDQLVPYINAKLGLDINLNSMTQLTV 120

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                  + +          G   +   +++I + +  F+  RD   + Q++  L     
Sbjct: 121 QHAQEIGSVLAKSATVVFGNGSAVVLSMMNLILIPVIGFYLLRDWPHLLQRIQELMPRRQ 180

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
              W  +++   +++     G   + +  G+       + G+ + V +G+   +++ +P 
Sbjct: 181 EPQWVALAQESNQMLGGFLRGQLAVMLANGITYAIGLTIVGLETGVVIGMAAGMLSFVPY 240

Query: 257 GAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
              +     ++  +    G       + L   I   +     +P  VG  I L  +   F
Sbjct: 241 LGNVIGITTALIAMYIQTGEFTPLLWVLLVFGIGQTLESILWQPRFVGERIGLHPVAVIF 300

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            ++ G    G  G+ +   + A++ V+ + ++   +E+ 
Sbjct: 301 AVMAGGVLFGFFGVLLALPVSAILVVLGRHALKRYRESP 339


>gi|311743457|ref|ZP_07717263.1| integral membrane protein [Aeromicrobium marinum DSM 15272]
 gi|311312587|gb|EFQ82498.1| integral membrane protein [Aeromicrobium marinum DSM 15272]
          Length = 382

 Score = 96.4 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 58/299 (19%), Positives = 108/299 (36%), Gaps = 14/299 (4%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           PV  A+I+     P  +   SK    S   A +  +  + L    +  L      +  ++
Sbjct: 55  PVALAIIVSTVLAPPVTWLRSK-GLPSVAAAGLVMIGFLGLITTLVAILTPQVAGQAPDI 113

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
             +     Q    V  WL D P    +    T+ +   Q     S   +       I   
Sbjct: 114 ADQASRGLQK---VRDWLIDGP-MQLSDAQITRAVGALQDRIQDSAAAISAGIFSTISTA 169

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
            S          L+++ ++I  F F +DG      + SLG      +  ++     + + 
Sbjct: 170 TS--------VVLNLVVILILTFLFIKDGHRFLPWVASLGGRRAGHHLTEVLGRSWETLG 221

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL-LI 271
                 +I+A+    ++G A  + GVP  V L V+T   + IP        A+++ + L+
Sbjct: 222 GFIRTQSIVALISATIIGIALAIVGVPLAVPLAVVTFFGSFIPIIGAFVTGALAVLVTLV 281

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            G+  +A  + L       +    L P+L G  + L        ++ G    G+ G F+
Sbjct: 282 TGSPQDALVILLVFVGVQQLEGNLLSPWLQGKTMNLHAAVILLAVLAGGSLFGITGAFL 340


>gi|30264667|ref|NP_847044.1| hypothetical protein BA_4841 [Bacillus anthracis str. Ames]
 gi|47530136|ref|YP_021485.1| hypothetical protein GBAA_4841 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|65321963|ref|ZP_00394922.1| COG0628: Predicted permease [Bacillus anthracis str. A2012]
 gi|30259342|gb|AAP28530.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           Ames]
 gi|47505284|gb|AAT33960.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           'Ames Ancestor']
          Length = 365

 Score = 96.4 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 54/335 (16%), Positives = 122/335 (36%), Gaps = 12/335 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           +L ++ G   P + A    +   P+ +    K +       +++ + V    +  + +L 
Sbjct: 18  ALLYVSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLILVFGAIVGLVTYLV 77

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              +     L+  V +     +   +  +         +L +K     +  +      ++
Sbjct: 78  TEAISATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNHLGEPQRYTITQNIQ 137

Query: 143 TNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             G +           I    + F          ++F+++A FF   D   ++Q++    
Sbjct: 138 NLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFISNDWHRLAQKVRKFL 197

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            +    Y K I   + K +         +     +++     +  VP  + + +IT ++ 
Sbjct: 198 PNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRVPYAITIAIITGVVD 257

Query: 253 MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++P  G    F    IY+   G+   A  L +   + + +  + + P ++   I L  L 
Sbjct: 258 LLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVI-VQRQIMEPKVLSSNIGLDPLA 316

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           T   L  G +  G LGL IGPV + L+  + K  +
Sbjct: 317 TLIALFVGFKLFGFLGLIIGPVTLVLLNTLHKARV 351


>gi|77407806|ref|ZP_00784559.1| membrane protein, putative [Streptococcus agalactiae COH1]
 gi|77173553|gb|EAO76669.1| membrane protein, putative [Streptococcus agalactiae COH1]
          Length = 396

 Score = 96.4 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 131/360 (36%), Gaps = 18/360 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYF----------LKGFFAPVLSALIIGFTSWPIYS---SF 51
           +LN Q ++  MI F++ ++++           +  F A ++  L+I    + +     +F
Sbjct: 18  ILNNQAVIALMITFLVFLTIFIFTKISFMFKPVFDFLAVLILPLVISGLLYYLLKPMVTF 77

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWL 110
           + K+        +     ++ L I  +         +++  +  +    N+  +    ++
Sbjct: 78  LEKRGIKRVTAILSVFTIIILLLIWAMSSFIPMMSNQLRHFMEDLPSYVNKVQMETSSFI 137

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
              P         +  LS+  S  +        N +D+    AS    +     ++ I  
Sbjct: 138 DHNPWLKSYKGEISSMLSNISSQAVSYAEKFSKNVLDWAGNLASTVARVT----VATIMA 193

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
              LF+  RD  ++      +          +I R +   +     G  I+AI  G++  
Sbjct: 194 PFILFYLLRDSRNMKNGFLMVLPTKLRQPADRILREMNSQMSGYVQGQIIVAITVGVIFS 253

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
             Y + G+   V LG+I  ++ M+P             L +         + +   IE  
Sbjct: 254 IMYSIIGLRYGVTLGIIAGVLNMVPYLGSFVAQIPVFILALVAGPVMVVKVAIVFVIEQT 313

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +  + + P ++G  + +  +   F L+      G+ G+F+   + A I V+ KE     K
Sbjct: 314 LEGRFVSPLVLGNKLSIHPITIMFILLTSGAMFGVWGVFLSIPIYASIKVVVKELFDWYK 373


>gi|282865805|ref|ZP_06274855.1| protein of unknown function UPF0118 [Streptomyces sp. ACTE]
 gi|282559449|gb|EFB65001.1| protein of unknown function UPF0118 [Streptomyces sp. ACTE]
          Length = 372

 Score = 96.4 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 124/354 (35%), Gaps = 17/354 (4%)

Query: 10  GIMRWMIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
                +++ +  V+L+ L        P++  L +   +WP+ + F+ K+       A + 
Sbjct: 21  SAELLLVLVMAGVTLWILGRMWPVVWPLVVGLFLTTLTWPL-ARFLRKRGWPPALAASVV 79

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           TV  + +    +  +      +  +L   V+   Q        L +   G   +    + 
Sbjct: 80  TVLFLLVVGGIVALIAVPVASQSGQLTDGVIAGIQK-------LREWAAGPPLNIDDAQI 132

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                +     +  L +     +   ++      ++  ++ +  +  +FFF +DG     
Sbjct: 133 SHALDAGIDRIQNSLGSTVTTVVTGLST-----VVNGVVTAVLSVFLMFFFLKDGPRFLP 187

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L              ++      + S       + + + + +G   W+ GVP  + L V
Sbjct: 188 WLTRQLPGRLATDIPTVAERGWDTLGSFVRSQAFVGMLDAVFIGLGLWILGVPLVLPLAV 247

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +T + A +P  GA  +     +  L+   + +A  + +   +   +     +P +    +
Sbjct: 248 LTFVSAFVPIIGALFAGFVAVLIALVSNGLTDAIIVLVIIIVVQQLEGNVFQPMIQSRGL 307

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            L        +  G    G++G  +      LIAV+W      + +  ++  ++
Sbjct: 308 GLHAAVVLLAVTLGGSLAGIVGSLLAVPAAGLIAVVWSYVREQLSDQPQEPETD 361


>gi|323137707|ref|ZP_08072783.1| protein of unknown function UPF0118 [Methylocystis sp. ATCC 49242]
 gi|322397004|gb|EFX99529.1| protein of unknown function UPF0118 [Methylocystis sp. ATCC 49242]
          Length = 415

 Score = 96.4 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 61/348 (17%), Positives = 120/348 (34%), Gaps = 17/348 (4%)

Query: 9   QGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           + +M W + F+ +   LYFL    AP ++   +G+   P+      +   S    A+I  
Sbjct: 50  RQLMLWGLSFVGLAAILYFLSPVLAPFVAGTALGYLLDPVADRM-QRWGVSRLGAALILL 108

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
              +   +  L+ L      ++   ++ +    Q    +    S      + +E   K+ 
Sbjct: 109 AGFIAFVVTALIILLPILSHQLAGFITALPGYLQTLHGLVTEWSSSFTSEYINEWLQKYG 168

Query: 128 SHPQSLKILSETF---LKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRDG 181
                    ++ +   L + G   I  F       G   ++    I+   +  F+   D 
Sbjct: 169 LGAAGASFDAQKYFNDLASQGAALIGDFLKSLVWRGYALINVVSLIVITPVVAFYMLLDW 228

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + + +D L         + ++R + + +     G +++ +  G+         G+   
Sbjct: 229 DHMVEIIDDLIPPRHRDDVRMLARDIDRALAGFVRGQSLVCLFLGVWYAVGLSAIGLNFG 288

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNI------FNATCLFLWGAIELFIVDKT 295
             +GVI  I++ IP    I+    SI + I            A  +   G I        
Sbjct: 289 FLIGVIAGILSFIPYVGSITAFVFSIIISIVQAWPHINLPIEAVAIVTTGLIMDG---YV 345

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L P LVG  + L  +   F L+      G  GL I     A +  I +
Sbjct: 346 LSPRLVGASVGLHPVWIMFALLAFGALFGFTGLIIAVPTAAALGAIMR 393


>gi|324990266|gb|EGC22204.1| permease [Streptococcus sanguinis SK353]
          Length = 364

 Score = 96.4 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 63/347 (18%), Positives = 123/347 (35%), Gaps = 17/347 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS---TFLAVIATVSVMCLFIV 76
           I   L  L   F+P++   ++ F             E+          +A V  + +  +
Sbjct: 27  IWSGLQSLTSVFSPIILGGVLAFIFNVPMKKLEDLLEKCRVPQKLQRGLALVLEVLILAL 86

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            +  +    +  +   V+++        P V +WL     G+ +S          Q+   
Sbjct: 87  IMTGIVSIVVPTLTTAVNQLSATIGKVAPQVAKWLQQ--SGLLSSSQLKDLTKQLQNSD- 143

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                +    I  +         IF ++  S+I  I  +F F      +      L + L
Sbjct: 144 -----IVNRAISLLGSLTGNISAIFGNFF-SVIMSIFLMFAFLSSKEHLQTITSRLLQVL 197

Query: 196 FP----AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
            P         +  ++ +      +G  I A+  G+++  AY L G+P     GV+  ++
Sbjct: 198 LPGKAVKRLSYVGSVIVETYDKFLMGQMIEAVIVGILVFIAYSLTGLPYAALTGVLAGVL 257

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           + IP   P S  A+    +   + + A            I    + P +VG  + LP L 
Sbjct: 258 SFIPYIGPFSACALGAIFIFTDSPWKALLSIAVFQGVQLIEGNVIYPRVVGQSVGLPTLF 317

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           T    + G    GL+G+     + A+I  + +E ++  +E K  I  
Sbjct: 318 TLAAALIGGNLFGLVGMIFFTPIFAVIYRLVREFVVEKEEKKALIKE 364


>gi|291556593|emb|CBL33710.1| Predicted permease [Eubacterium siraeum V10Sc8a]
          Length = 468

 Score = 96.4 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 57/304 (18%), Positives = 101/304 (33%), Gaps = 4/304 (1%)

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGM 117
                 I  +  + +    +  L    +  +  LV+ +     Q    V + L + P   
Sbjct: 108 RVMSVAITMILALLILTGIIWVLLPQLIDTITMLVNNMPEYVTQISDWVSQTLRNYPEVE 167

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGID-FIPRFASRFGMIFLDYCLSIIFMIIALFF 176
                +T  +S   +  + +E   + N I   I         +F++  L  +  I  L  
Sbjct: 168 AYVLQFTGGISDMLNNWLSTELLPQMNNIWNLISSNVMNIISVFMNLLLGFVIAIYFLNS 227

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
                    + L  L +          +R V K       G  + +   G+V      + 
Sbjct: 228 KELFAAQFKKILYCLFKPKVATKIINSTREVNKSFGQFITGKILDSFIIGMVYVLLMSIF 287

Query: 237 GVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
            +P  V  GV+  I  +IP  G  I F    + L++  +        +   I   I    
Sbjct: 288 NMPYAVLCGVVMGIFCIIPYFGPFIGFIPCMLLLVLV-DPIQCIYFTIMVVIIQNIDGNV 346

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L P ++G    L      FG++ G    G +GL IG  L A++    K  +    E K  
Sbjct: 347 LAPKIIGDSTGLSSFWVIFGMLVGQGLFGFVGLIIGIPLFAVVYSFTKNRVKKRLEKKAL 406

Query: 356 ISSN 359
            S +
Sbjct: 407 PSDS 410


>gi|227487862|ref|ZP_03918178.1| membrane protein [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227092189|gb|EEI27501.1| membrane protein [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 469

 Score = 96.4 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 48/337 (14%), Positives = 119/337 (35%), Gaps = 18/337 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFF----APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +R +++ + + + + + G       P   AL+I    WP  +     +   +   A++  
Sbjct: 68  LRLLVIGVTVYAGWRILGALWQGVLPAALALLISSVLWPPAAWLKRHRLP-AWLAALVTM 126

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++V+  F   +  +      + + L  + V A Q    +  W  + P  +   +    + 
Sbjct: 127 ITVLGAFSAIIALIAPGVARQSQTLYFQSVDAIQR---LQLWAQEPPLSLKGEDF---NR 180

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              +++  + +      G  F    A+          +     +I  FF  +DG      
Sbjct: 181 IFGEAVAWIQQQAGNIAGGVFAGLGAAS------SLLVLATITLIITFFVLKDGERFMPW 234

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
             +        +  ++       + +      ++A+ + +++G    +  +P  +AL  +
Sbjct: 235 ARAFTGRQVGWHLTELLTRCWNTLSNYIRVQALVALIDAVLIGLGLVVMKIPMALALATL 294

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T +   +P  GA ++ T      L+   +  A  + +   I   +    L P L    + 
Sbjct: 295 TFVAGFVPIVGAFVAGTVAVAIALVTMGLTKALMVLILILIVQQLEGNVLSPMLQSKAMN 354

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L        +  G    G+ G  +   + A +AV+ +
Sbjct: 355 LHPAVVILVVTVGGGLFGIAGALLAVPITATVAVLLR 391


>gi|256789937|ref|ZP_05528368.1| integral membrane protein [Streptomyces lividans TK24]
          Length = 359

 Score = 96.4 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 57/349 (16%), Positives = 128/349 (36%), Gaps = 17/349 (4%)

Query: 14  WMIMFIILVSLYFLKGFFA---PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +I+ ++ V+L+ L   ++   P+L  L++   +WP  + F+ +        A + TV+ 
Sbjct: 21  LLILVMLAVTLWVLGRMWSVVWPLLVGLLLTTLTWPP-ARFLRRHGWRPALAATVVTVAF 79

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + +  +  +      +  EL   VV   Q        L +   G   +    +     
Sbjct: 80  LLVVLGIVALIAVPMSSQTDELTDGVVEGIQR-------LREWAAGPPLNIGDDEITGAM 132

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            S     +  + +     I    +      ++  ++ +  +  +FFF +DG      L  
Sbjct: 133 DSAVARIQDSVGS-----ITTAVATGVGAVVNGLITAVLGVFLMFFFLKDGPRFLPWLAR 187

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                       ++    + + S      ++ + + + +G   W+ GVP  + L V+T +
Sbjct: 188 QLPGRLATDVPVVALRGWETLGSFVRSQALVGLLDAVFIGLGLWILGVPLVLPLAVLTFV 247

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            A +P  GA  +     +  L+   + +A  +     +   +     +P L    + L  
Sbjct: 248 SAFVPIVGALFAGFVAVLIALVSNGLTDALIVLAIIVVVQQLEGNVFQPILQSRGLGLHA 307

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                 +  G    G++G  +     ALIAV+W      + E  E  ++
Sbjct: 308 AVILLAVTLGGSLSGIVGSLLAVPFAALIAVVWTYVREQLSERPEATAT 356


>gi|21219049|ref|NP_624828.1| integral membrane protein [Streptomyces coelicolor A3(2)]
 gi|289773819|ref|ZP_06533197.1| integral membrane protein [Streptomyces lividans TK24]
 gi|6066628|emb|CAB58273.1| integral membrane protein [Streptomyces coelicolor A3(2)]
 gi|289704018|gb|EFD71447.1| integral membrane protein [Streptomyces lividans TK24]
          Length = 363

 Score = 96.4 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 57/349 (16%), Positives = 128/349 (36%), Gaps = 17/349 (4%)

Query: 14  WMIMFIILVSLYFLKGFFA---PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +I+ ++ V+L+ L   ++   P+L  L++   +WP  + F+ +        A + TV+ 
Sbjct: 25  LLILVMLAVTLWVLGRMWSVVWPLLVGLLLTTLTWPP-ARFLRRHGWRPALAATVVTVAF 83

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + +  +  +      +  EL   VV   Q        L +   G   +    +     
Sbjct: 84  LLVVLGIVALIAVPMSSQTDELTDGVVEGIQR-------LREWAAGPPLNIGDDEITGAM 136

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            S     +  + +     I    +      ++  ++ +  +  +FFF +DG      L  
Sbjct: 137 DSAVARIQDSVGS-----ITTAVATGVGAVVNGLITAVLGVFLMFFFLKDGPRFLPWLAR 191

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                       ++    + + S      ++ + + + +G   W+ GVP  + L V+T +
Sbjct: 192 QLPGRLATDVPVVALRGWETLGSFVRSQALVGLLDAVFIGLGLWILGVPLVLPLAVLTFV 251

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            A +P  GA  +     +  L+   + +A  +     +   +     +P L    + L  
Sbjct: 252 SAFVPIVGALFAGFVAVLIALVSNGLTDALIVLAIIVVVQQLEGNVFQPILQSRGLGLHA 311

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                 +  G    G++G  +     ALIAV+W      + E  E  ++
Sbjct: 312 AVILLAVTLGGSLSGIVGSLLAVPFAALIAVVWTYVREQLSERPEATAT 360


>gi|303240125|ref|ZP_07326646.1| sporulation integral membrane protein YtvI [Acetivibrio
           cellulolyticus CD2]
 gi|302592394|gb|EFL62121.1| sporulation integral membrane protein YtvI [Acetivibrio
           cellulolyticus CD2]
          Length = 357

 Score = 96.4 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 58/338 (17%), Positives = 116/338 (34%), Gaps = 8/338 (2%)

Query: 9   QGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
             +   +I+  +L   Y     +  F AP + A+II   + P+     SK +      ++
Sbjct: 10  NQLASILIVAGLLFGAYVGIKYVIAFLAPFILAVIISSINEPVVRFLESKAKMDRKAASI 69

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            + +  +C+     + + +    E+ +L   +         +           + +  + 
Sbjct: 70  SSLILSVCVIAAIAVLVLFKTYGELIKLQRNLPAYIDSSSYILSGYYSRINSFYNNLPYQ 129

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
              S  ++L +          I  I               +     +++ +F   D  +I
Sbjct: 130 VQSSFRENLLVFLPKI--EGLITSIATSIINSITSLPKLGVFTTVTLLSSYFISSDRKNI 187

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              +     +     +  +       I   F    II     +V    + +      V +
Sbjct: 188 RNFIYRQIPNRSQKNFYTVKNGTVSSIFGYFRAQMIIMTVTFVVSTLGFIIINTEYAVLM 247

Query: 245 GVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           G+ITA+   IP  G+ I      I+  I GNI     L       + IV + + P +V  
Sbjct: 248 GLITALADGIPLLGSGIVMIPWIIWNFITGNIRMGLGLSSVYLFAV-IVRQIIEPKIVSN 306

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
              L  L T   +  G+   G+ GLFIGP++M  +  +
Sbjct: 307 QTGLHPLVTLISMYLGLMIFGVTGLFIGPIIMIFLKSL 344


>gi|227537931|ref|ZP_03967980.1| permease [Sphingobacterium spiritivorum ATCC 33300]
 gi|227242233|gb|EEI92248.1| permease [Sphingobacterium spiritivorum ATCC 33300]
          Length = 396

 Score = 96.4 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 52/332 (15%), Positives = 116/332 (34%), Gaps = 15/332 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
              + +I+  +Y  +    P+L ++II  T +PI +    K     +  A+++ +  + +
Sbjct: 18  LFALVLIIALMYVTQSVLVPLLFSIIISITLFPIANFLERKLHFVRSLAAIVSVIIAILI 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               + F+    + E   +        +  + V         G +  +      S   + 
Sbjct: 78  IGGLIWFI----VHESIIIGKDATDITKKVMSVVESFQSWVEGRFGVQR-----SEMAAQ 128

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                  +  N   ++       G       L  IF+   L+  YRD     +       
Sbjct: 129 FQEQSNKMLNNVGGYLSTAFGSIGSTLAGMVLVPIFIFFLLY--YRD--FFKEFFFKAFP 184

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           +        +   + +VI+S FLG+  +     ++  +   + G+      G + + + +
Sbjct: 185 NTENQKVHGVLNRIYEVIQSYFLGLVTVMGIVAVLNTAGLMIMGIEYAWFFGSLASFLML 244

Query: 254 IPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           +P               L  K + + A  +  W  +  F+    + P +VGG + +  L 
Sbjct: 245 LPYIGIAIGSILPALFALATKDSAWYAIGVIAWFQVVQFLEGNIITPNIVGGKVSINPLM 304

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               ++ G    GL GL +   + A + VI+ 
Sbjct: 305 AIIAILIGGMIFGLAGLILALPMTAALKVIFD 336


>gi|293400193|ref|ZP_06644339.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306593|gb|EFE47836.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 384

 Score = 96.4 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 53/342 (15%), Positives = 122/342 (35%), Gaps = 10/342 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTFLAVIATVSVMCLFIVPLLFL 81
            +  L    + +L A ++      +      K  + +   + +I+ +  +   I  +  L
Sbjct: 35  CIGLLAPILSGLLLAFVLSIPVRGLAKRLRRKLTKATDRQIDMISLLLTLICVIAIIALL 94

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + ++   V  +    Q     P W+  +      +E  + H +   +L   S    
Sbjct: 95  CVIAIPQLTASVKSIAALVQEKW--PDWVGLLQRYGIDTEKLSAHFA---ALDWKSILQS 149

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS----QQLDSLGEHLFP 197
            ++ ++ +    +      +     +   ++  F+       +S    + L +  +    
Sbjct: 150 ISSEMNTVISSVANVAGSTVSAIADVAISLVITFYVLIGWRELSSQSKRALYAYCKESVA 209

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                IS++          G  +  +  G ++  ++ +AG+P      V+TA  A +P  
Sbjct: 210 DRICHISKLAHDTYAKFLSGQCVEVMILGTLIFLSFSVAGIPYAGLTAVLTAAFAFVPYI 269

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
                 A  I   +      A   F+      F+ ++ + P +VG  + L    T   ++
Sbjct: 270 GGFLSCAFGILFTLLAAPNKALLCFIVYQATQFVENQFIYPHVVGNSVGLSPFWTLLAVL 329

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            G +  G+LG+     LMAL++ +  ESI      ++   SN
Sbjct: 330 LGGKLFGVLGMIFFIPLMALVSQLLHESIERRLHTRKPELSN 371


>gi|257893855|ref|ZP_05673508.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|257830234|gb|EEV56841.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
          Length = 393

 Score = 96.4 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 55/332 (16%), Positives = 122/332 (36%), Gaps = 10/332 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +     P+L ALI+ +   P+          S     +I  V ++ L  +  ++L  + 
Sbjct: 50  IIATILPPLLFALILYYLLEPVIKRLSKHL--SRNLSVIIVYVIILFLLGLGSVWLVPFL 107

Query: 86  MLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
             + K L+S +  L       + ++L   P     ++ +T        +      + ++ 
Sbjct: 108 EEQTKTLISSLPDLFQDFQESLRQFLEKTPFADSFNQFFTSIDDVTSDIVGFIGNYWESG 167

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
                 +  S          +++    I  FF  R+     Q + ++    F   +K ++
Sbjct: 168 -----AQRISNIFSTVTAIFITLFTGPIVTFFLLRNPQKFYQSVLAIVPPAFRTDFKNLT 222

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
           +I  + + S   G  I +   G V    + L G+     L +   ++ +IP  G  I+F 
Sbjct: 223 KIANQQLGSFLKGQIIASFILGAVYWVCFLLIGLEFASVLAISAGLLCIIPYIGPFIAFF 282

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
              I             + +W A++L   D  + P ++G  +++  +     L+     M
Sbjct: 283 PGLIIAFQDSTFMAVKFVIVWFAVQLLHGDLVI-PRVMGDRLQIHPITILIVLLVMGDLM 341

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G++G+  G  +  L+ ++        K+   K
Sbjct: 342 GIVGVIFGIPIYTLVKLLVTFIFRKFKQRYNK 373


>gi|328554823|gb|AEB25315.1| integral inner membrane protein [Bacillus amyloliquefaciens TA208]
 gi|328913184|gb|AEB64780.1| putative integral inner membrane protein [Bacillus
           amyloliquefaciens LL3]
          Length = 368

 Score = 96.4 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 55/324 (16%), Positives = 118/324 (36%), Gaps = 13/324 (4%)

Query: 25  YFLKGFFA-------PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           +  + FF        P+L + I+ F   PI      K     T   ++  +  + L    
Sbjct: 28  FIFQPFFGFITTLFFPILISGILFFIFNPIVRLLEKKIP--RTLAILLIYLVFIGLIAFM 85

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
              +      ++  L +           +   LS      W + + T+     + ++   
Sbjct: 86  FTAIGPIVASQVTGLFNNFPDYINQIQSLTTQLSH---SKWFTWMMTQDYVSIEKIQQSL 142

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
             FL++   +     ++ FG++  +  L +I +   LF+  +DG         +    + 
Sbjct: 143 TGFLQSLPQNITASLSAVFGVVT-NITLVVITVPFILFYMLKDGRRFPLLAVKILPSSYR 201

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
           A  +KI   +   + + F G  +I +  G      YW+ G+P  + LG++ A+  +IP  
Sbjct: 202 AEGRKIFNDLYVTLAAYFQGQLLICLFVGTACFIGYWIIGLPYALILGMVIAVTNIIPYL 261

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P    A ++ +    +   A    +   +   +    L P ++G  +    L     LV
Sbjct: 262 GPFLGAAPAVIIAFMDSPAKALFAVIVVVVVQQLDGNLLSPLVIGKRLNTHPLTIILLLV 321

Query: 318 GGVRTMGLLGLFIGPVLMALIAVI 341
           G     G+L + +   + A++   
Sbjct: 322 GAGSFGGILAMILAVPVYAVLKAF 345


>gi|281491674|ref|YP_003353654.1| hypothetical protein LLKF_1206 [Lactococcus lactis subsp. lactis
           KF147]
 gi|281375392|gb|ADA64905.1| Hypothetical protein LLKF_1206 [Lactococcus lactis subsp. lactis
           KF147]
          Length = 390

 Score = 96.4 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 45/321 (14%), Positives = 115/321 (35%), Gaps = 8/321 (2%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           PV+ A +  +   PI      K+        V+  + +  +    + +     +  +   
Sbjct: 60  PVILAAVFYYLLNPIVDFLEKKRVPR-----VVTIIVLFLIIAALIAWGLIVAIPNIISG 114

Query: 93  VSKVVLANQHGIPVPR-WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           V     +  H +   +  ++ +       +   +     +S+      + K   ++ +  
Sbjct: 115 VDNFASSVPHYVNTAQKEINALAKNPHFEQFRPQVDQFAKSIGNQLIDWSKAFSVNAVTT 174

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
             S          +S+I     LF+  RDG  ++  +  L  + +     K+   +   +
Sbjct: 175 L-SHLISKTTSILISLIVFPFVLFYLLRDGQRLNGFVTHLLPNDWRKETSKVLHEINSQL 233

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLL 270
            +   G  ++AI   ++      + G+   VAL +    + ++P  G+ ++   + I  L
Sbjct: 234 SNYVRGQVLVAIAVAIMFMIGLPIIGLRYAVALAITAGFLNLVPFLGSFLAAIPMVIVGL 293

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             G       + +   IE  +  + + P ++G  + +  +   F L+   + +G+ G+ +
Sbjct: 294 AIGGPLMLVKVIIVLIIEQTLEGRFISPLVLGKQMSIHPITILFVLLTAGQILGVWGVLL 353

Query: 331 GPVLMALIAVIWKESIMAIKE 351
                A + VI        +E
Sbjct: 354 AIPFYATLKVIIVHVYEWYRE 374


>gi|157961796|ref|YP_001501830.1| hypothetical protein Spea_1973 [Shewanella pealeana ATCC 700345]
 gi|157846796|gb|ABV87295.1| protein of unknown function UPF0118 [Shewanella pealeana ATCC
           700345]
          Length = 369

 Score = 96.1 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 60/357 (16%), Positives = 140/357 (39%), Gaps = 15/357 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +PQ +   +I+    +++YF  G  AP+L AL++ F   WP+    +++   + T  A +
Sbjct: 15  DPQAVTLMLILMGFALAIYFAGGLLAPLLIALVLAFLLEWPVAQ--MARIGINRTTAASL 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMWASELWT 124
             V  + L ++    L      +   L++ +      G+   + +++  P  +  S+L  
Sbjct: 73  VLVLFIGLMLLISFGLVPSVWRQGVSLMADLPSMIDKGLHTAQLYINKYPQFVNPSQL-- 130

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                  ++    +  L T  +  I +    +    L   + +I + + +FFF +D   +
Sbjct: 131 ------DTMVAELKKMLDTQHLLDIGKQLLGYSASLLVLMVYVILIPLLVFFFLKDKDEL 184

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +              +K+   + + I +   G  I  +  G+     + L  +     L
Sbjct: 185 IKGSKRFFPT-NRDLARKVWNEMHQQIFNYIRGKIIEIVIIGVASYIFFALMDLRYAALL 243

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVG 302
           GV+T +  +IP  GA +    +++   ++          + G   +  +D   L P L  
Sbjct: 244 GVLTGLSVLIPYVGATLVTLPIALVAFVQWGFSPEFGYLMVGYGIIQALDGNVLVPLLFS 303

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             + L  +     ++      G+ G+F    L +L+  +     +    +++KI ++
Sbjct: 304 DAVDLHPVFIIAAVLIFGGLWGVWGVFFAIPLASLVKAVINAWPVPNNPDEQKIEAS 360


>gi|108762102|ref|YP_633773.1| hypothetical protein MXAN_5634 [Myxococcus xanthus DK 1622]
 gi|108465982|gb|ABF91167.1| putative membrane protein [Myxococcus xanthus DK 1622]
          Length = 424

 Score = 96.1 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 51/356 (14%), Positives = 105/356 (29%), Gaps = 30/356 (8%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESS----TFLAVIATVSVMCLFIVPLLFLF 82
            +    P   A +I +   P+       K            ++          + ++ L 
Sbjct: 51  FRSVVMPFAGAALIAYLVQPLVGRISRVKVAGRPVPRWTALLLIYAGFFVGVYLFIVALV 110

Query: 83  YYGMLEMKELVSKVVLANQHGIP---------VPRWLSD--IPGGMWASEL--------- 122
                E+  +  + V       P            WLS   IP  +    L         
Sbjct: 111 PQLYRELSRVSREAVTFANTLTPEHVQELAQRAETWLSTRGIPVALSNRALEGADAGSSN 170

Query: 123 ----WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
               +   L       +   + L    +  I   +             + F+++   FF 
Sbjct: 171 GTFGFALDLEQFLGDAVKRVSILVQENLGDIVNVSRSIVTSVAAGVFMLFFVLMVAAFFS 230

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D  +I +   +L    +    +++   + + +     G   I I  G++      L GV
Sbjct: 231 IDAHAIRRYFGTLIPPEYAIDARQLLERIDRSLSGVVRGQVTICIVNGILTFMGLLLFGV 290

Query: 239 PSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
                L  I    ++IP  G  +S   + +  L  G       +  W      +    L 
Sbjct: 291 KFAFLLATIATFFSLIPIFGTILSSVPIVLIALADG-FQKGLAILAWIIGIHAVEAYFLN 349

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           P ++G    L  +   F L+ G R  GL+G      + +++   +  + +  +   
Sbjct: 350 PKIMGQAAHLHPVIVAFSLIAGERLFGLVGALFAVPVASVLVACFDYARLKAQPAP 405


>gi|19745999|ref|NP_607135.1| hypothetical protein spyM18_0995 [Streptococcus pyogenes MGAS8232]
 gi|19748162|gb|AAL97634.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
          Length = 393

 Score = 96.1 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 60/337 (17%), Positives = 124/337 (36%), Gaps = 7/337 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+ +  + F      P++ + I+ + + P+    I+    + T    I    +  LF+
Sbjct: 43  ISFLFMPVISFFAVIMLPLVISTILYYLTKPLVD-LINHLGPNRTTSIFIVFGLITLLFV 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +         ++   +  +             L +    +         L+H     +
Sbjct: 102 WAISGFVPMVQTQLTSFIEDLPKYVDKVNEEANKLLENEWLVSYKPQLQDMLTHTSQKAL 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   N ID+   FA     I     ++II     LF+F RD   +   L ++    
Sbjct: 162 DYAQSFSKNAIDWAGNFAGAIARIT----VAIIISPFILFYFLRDSSHMKNGLVNVLPLK 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   + K +     G   +AI  G +    + L G+   +  G+I   + MIP
Sbjct: 218 LRVPMVRVLGDINKQLSGYVQGQVTVAIVVGFMFSIMFSLVGLKYAITFGIIAGFLNMIP 277

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G+ ++   V I  +++G       L ++  IE  I  + + P ++G  + +  +   F
Sbjct: 278 YLGSFLAMIPVVIMAMVQGPFMLVKVLVIF-MIEQTIEGRFVAPLVLGNKLSIHPITIMF 336

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            L+      G+ G+F+   + A + V+ KE     K+
Sbjct: 337 LLLTAGSMFGVWGVFLVIPIYASVKVVIKELFDWYKK 373


>gi|326406731|gb|ADZ63802.1| permease [Lactococcus lactis subsp. lactis CV56]
          Length = 390

 Score = 96.1 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 45/321 (14%), Positives = 115/321 (35%), Gaps = 8/321 (2%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           PV+ A +  +   PI      K+        V+  + +  +    + +     +  +   
Sbjct: 60  PVILAAVFYYLLNPIVDFLEKKRVPR-----VVTIIVLFLIIAALIAWGLIVAIPNIISG 114

Query: 93  VSKVVLANQHGIPVPR-WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           V     +  H +   +  ++ +       +   +     +S+      + K   ++ +  
Sbjct: 115 VDNFASSVPHYVNTAQKEINALAKNPHFEQFRPQVDQFAKSIGNQLIDWSKAFSVNAVTT 174

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
             S          +S+I     LF+  RDG  ++  +  L  + +     K+   +   +
Sbjct: 175 L-SHLISKTTSILISLIVFPFVLFYLLRDGQRLNGFVTHLLPNDWRKETSKVLHEINSQL 233

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLL 270
            +   G  ++AI   ++      + G+   VAL +    + ++P  G+ ++   + I  L
Sbjct: 234 SNYVRGQVLVAIAVAIMFMIGLPIIGLRYAVALAITAGFLNLVPFLGSFLAAIPMVIVGL 293

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             G       + +   IE  +  + + P ++G  + +  +   F L+   + +G+ G+ +
Sbjct: 294 AIGGPLMLVKVIIVLIIEQTLEGRFISPLVLGKQMSIHPITILFVLLTAGQILGVWGVLL 353

Query: 331 GPVLMALIAVIWKESIMAIKE 351
                A + VI        +E
Sbjct: 354 AIPFYATLKVIIVHVYEWYRE 374


>gi|255026696|ref|ZP_05298682.1| hypothetical protein LmonocytFSL_10790 [Listeria monocytogenes FSL
           J2-003]
          Length = 398

 Score = 96.1 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 121/340 (35%), Gaps = 14/340 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           + +    I+F++L   Y            F P+L A  + +   P+      +K      
Sbjct: 17  EILAVVAILFVLLQMKYIFSPIGIIVSTLFMPILVAGFLFYLFNPLVLFLEKRKVPR-LL 75

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++  ++ + L ++ ++ L      ++ EL   +    Q      +WL  +      S 
Sbjct: 76  SVIVIFIAFITLVVLAVMQLGPTLADQVAELAKAIPGYWQ---DFEKWLQGL---SNNSA 129

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L    +        +S   + +  +D +             + + ++ +   +F+ ++DG
Sbjct: 130 LKDIDMKQELEKLNISLPKIMSVVVDGVASSFGAIVSFVSSFVMILVTVPFIVFYMFKDG 189

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               +           +  K+I + + K I +      I  +  GL     Y + G P  
Sbjct: 190 HKFVESSGKFFPAGIRSEAKQIIKEMNKTISTYISSQAIDCMFVGLFTFIGYLIIGQPYA 249

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +  G I     +IP   P    A ++ + +  +   A  + +   I   I    L P+++
Sbjct: 250 LLFGFIAGATNIIPYLGPFIGAAPAVIVALFTSPVQALLVIVVVTIVQQIDSNLLSPYIM 309

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           G  + +  L     L+      G+ G+ +G  L A++  I
Sbjct: 310 GKSLSIHPLTIIIILIVAGNLAGIFGMILGVPLYAVVKTI 349


>gi|229493922|ref|ZP_04387694.1| integral membrane protein [Rhodococcus erythropolis SK121]
 gi|229319199|gb|EEN85048.1| integral membrane protein [Rhodococcus erythropolis SK121]
          Length = 397

 Score = 96.1 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 49/308 (15%), Positives = 104/308 (33%), Gaps = 17/308 (5%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           L+ +     PV  A+++    WP     I +        A I  V  + +    +  +  
Sbjct: 52  LWVI---ILPVALAIVVATVMWPPTRGMIKR-GMPPAAAAGITLVLSIGILAGVIAGIVP 107

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             + +  EL +K          V  WL   P  +                 + +      
Sbjct: 108 SVVSQAPELANKTTEGIN---QVQDWLQGPPLNLK---------DDQIDNAVHAVITKVQ 155

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
                I               +++  ++I  FFF +DG      L ++G      + +++
Sbjct: 156 ESGTAIASGVFSGVSTASSLLVTLGLVLILAFFFIKDGPRFIPWLHAVGGGRAGRHLEEV 215

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISF 262
              +   +        ++++ + + +G+   + GVP    L ++T I   IP  GA ++ 
Sbjct: 216 LTRMWDTLGGFIRTQALVSLIDAVFIGAGLLILGVPLAPVLAILTFIGGFIPIVGAFVAG 275

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
               +  L+   +  A  + +       I    L+P L    +KL  +     +  G   
Sbjct: 276 ALAVLVALVANGLTTAIIVLIIILAVQQIEGNVLQPVLQSKSMKLHAVIVLLAVAAGSSL 335

Query: 323 MGLLGLFI 330
            G++G F+
Sbjct: 336 YGIVGAFL 343


>gi|222153253|ref|YP_002562430.1| membrane protein [Streptococcus uberis 0140J]
 gi|222114066|emb|CAR42470.1| putative membrane protein [Streptococcus uberis 0140J]
          Length = 393

 Score = 96.1 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 65/361 (18%), Positives = 138/361 (38%), Gaps = 21/361 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLY--------------FLKGFFAPVLSALIIGFTSWPIYSS 50
           +LN + ++  MI+ ++ ++++              FL     P++ + I+ + + P+   
Sbjct: 18  ILNNKAVVGLMILLVVFLTIFVFTKISFLFSAVGSFLTILMLPLVISTILYYLTKPLVD- 76

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
           FI K   + +   VI    ++C+ I     L      +    +S +    +        L
Sbjct: 77  FIEKLGPNRSVSIVIVFGLIICVLIWAFSGLIPMISDQTTTFISDLPKYVETMDKEATKL 136

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
            +    +         L++     +        N I++   FAS    I     +SII  
Sbjct: 137 LENKWLVNYKAELQDMLTNISQKALDYAESFSKNAINWAGNFASAIARIT----VSIIIS 192

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
              LF+F RD   +   L ++          ++   + + +     G   +AI  G + G
Sbjct: 193 PFILFYFLRDSSMMKDGLVNVLPTKVRIPISRVLGDINQQLSGYVQGQVTVAIIVGFMFG 252

Query: 231 SAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
             + + G+   +   +    + M+P  G+ ++   V I  +++G I     L ++  IE 
Sbjct: 253 IMFSIVGLKYSITFSIAAGFLNMVPYLGSFLAMIPVVIMAMVQGPIMLIKVLIIF-TIEQ 311

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            I  + + P ++G  + +  +   F L+      G+ G+F+     A + VI KE     
Sbjct: 312 TIEGRFVTPLVLGNKLSIHPITIMFLLLTAGAMFGVWGVFLVIPFYASVKVIVKELFEWY 371

Query: 350 K 350
           K
Sbjct: 372 K 372


>gi|25011316|ref|NP_735711.1| hypothetical protein gbs1267 [Streptococcus agalactiae NEM316]
 gi|76798341|ref|ZP_00780585.1| transport protein [Streptococcus agalactiae 18RS21]
 gi|77412788|ref|ZP_00788993.1| putative membrane protein [Streptococcus agalactiae 515]
 gi|23095740|emb|CAD46926.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76586292|gb|EAO62806.1| transport protein [Streptococcus agalactiae 18RS21]
 gi|77161084|gb|EAO72190.1| putative membrane protein [Streptococcus agalactiae 515]
          Length = 396

 Score = 96.1 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 131/360 (36%), Gaps = 18/360 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYF----------LKGFFAPVLSALIIGFTSWPIYS---SF 51
           +LN Q ++  MI F++ ++++           +  F A ++  L+I    + +     +F
Sbjct: 18  ILNNQAVIALMITFLVFLTIFIFTKISFMFKPVFDFLAVLILPLVISGLLYYLLKPMVTF 77

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWL 110
           + K+        +     ++ L I  +         +++  +  +    N+  +    ++
Sbjct: 78  LEKRGIKRVTAILSVFTIIILLLIWAMSSFIPMMSNQLRHFMEDLPSYVNKVQMETSSFI 137

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
              P         +  LS+  S  +        N +++    AS    +     ++ I  
Sbjct: 138 DHNPWLKSYKGEISSMLSNISSQAVSYAEKFSKNVLEWAGNLASTVARVT----VATIMA 193

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
              LF+  RD  ++      +          +I R +   +     G  I+AI  G++  
Sbjct: 194 PFILFYLLRDSRNMKNGFLMVLPTKLRQPTDRILREMNSQMSGYVQGQIIVAITVGIIFS 253

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
             Y + G+   V LG+I  ++ M+P             L +         + +   IE  
Sbjct: 254 IMYSIIGLRYGVTLGIIAGVLNMVPYLGSFVAQIPVFILALVAGPVMVVKVAIVFVIEQT 313

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +  + + P ++G  + +  +   F L+      G+ G+F+   + A I V+ KE     K
Sbjct: 314 LEGRFVSPLVLGNKLSIHPITIMFILLTSGAMFGVWGVFLSIPIYASIKVVVKELFDWYK 373


>gi|320546512|ref|ZP_08040827.1| membrane protein [Streptococcus equinus ATCC 9812]
 gi|320448897|gb|EFW89625.1| membrane protein [Streptococcus equinus ATCC 9812]
          Length = 395

 Score = 96.1 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 71/361 (19%), Positives = 135/361 (37%), Gaps = 21/361 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLY--------------FLKGFFAPVLSALIIGFTSWPIYSS 50
           +LN Q  +  ++ FI+ ++LY              FL     P++ + I+ +   P+  +
Sbjct: 18  VLNSQATVAILVTFIVFLTLYLFTKISFLFEPVLAFLAIIMLPLVISAILYYLIKPL-VA 76

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
           FI ++  S T    I    ++ L I  +         ++K  +  +    +        L
Sbjct: 77  FIERRGFSRTTSIFIVFAIIIALIIWAVASFIPMIEGQVKSFIENLPAYVKSVNIEGSKL 136

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
              P            L +  +  +        N  D+   FAS    +     ++II  
Sbjct: 137 LRSPWLSNYQTELQDMLVNISNKAVDYAESFSKNAFDWASNFASAIARVT----VAIIMS 192

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
              LF+F RD   +   L             +I   + K +     G   +AI  G++  
Sbjct: 193 PFILFYFLRDSHKMKDGLIKALPTKMRRPSARILGDINKQLAGYVQGQVTVAIVVGIMFT 252

Query: 231 SAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
             + + G+      G+I   + MIP  G+ ++   V I  +++G I     L  +  IE 
Sbjct: 253 VFFNIIGLRYAATFGIIAGFLNMIPYLGSFLAMVPVVIMGIVQGPIMLVKVLVTF-VIEQ 311

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            I  + + P ++G  + +  +   F L+      G+ G+F+G  + A I V+ KE     
Sbjct: 312 TIEGRFVAPLVLGSKLSIHPITIMFILLTSGSMFGIWGVFLGIPIYASIKVVVKEIFDWY 371

Query: 350 K 350
           K
Sbjct: 372 K 372


>gi|282880125|ref|ZP_06288845.1| membrane family protein [Prevotella timonensis CRIS 5C-B1]
 gi|281305998|gb|EFA98038.1| membrane family protein [Prevotella timonensis CRIS 5C-B1]
          Length = 385

 Score = 96.1 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 53/352 (15%), Positives = 132/352 (37%), Gaps = 23/352 (6%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +++ ++   + +L     P   A +  +  +P+      K       LA+I T+  +  
Sbjct: 34  ILLIIVVFYLVNYLSSVLLPFFIAWLFAYLLYPLVKFVQYKMHVKVRSLAIIITMLAVLG 93

Query: 74  FIVPLLFLFYYGMLE----MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            +  +++     M+E    +  +++  +    H      ++S           W +    
Sbjct: 94  VMAGVVYAIIPSMIEQIDKLNNILNNWISQTTHSSDFGSYISQ----------WVEKNQA 143

Query: 130 PQSLKILSETF--LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                + S+ F  L    +  +     +   I +    S+I ++   FF  +D   ++  
Sbjct: 144 GIEKFMKSKDFSELVKTTMPKLFSIVGQTASIIISVVASLITLLYT-FFILQDYEFLTDN 202

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              +       +W ++ + V + + +   G  ++++  G++ G    +   P  +ALG++
Sbjct: 203 WIRIFPKKNRPFWSELMQDVERELNNYIRGQGLVSLCLGILFGIGLTIIDFPMAIALGIM 262

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG------AIELFIVDKTLRPFLV 301
             +M ++P    ++   ++   ++K        L ++G       I   I D  L P ++
Sbjct: 263 MGLMNLVPYLHTLALVPMAFLAMLKAADTGQNFLIVFGLSLLVFLIVQVISDTVLTPKIM 322

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G  + L        L      +G +GL +   L  L+   WK+ +   K+ +
Sbjct: 323 GKAMNLNPAILLLSLSIWGTLLGFIGLIVALPLTTLLIAYWKKYVTQEKQQE 374


>gi|46199976|ref|YP_005643.1| permease [Thermus thermophilus HB27]
 gi|46197603|gb|AAS82016.1| permease [Thermus thermophilus HB27]
          Length = 365

 Score = 96.1 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 47/333 (14%), Positives = 115/333 (34%), Gaps = 8/333 (2%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
               + +L+A    +   P+  +   ++   +  + ++  +  + L +    FL    ++
Sbjct: 34  WPALSVLLTAFAFAYLVHPLVQALERRRLPRAVGVVLVYLLLGLFLAL--ASFLAAQTVV 91

Query: 88  EMKELVSKVVLANQHG----IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
           E+  L   +           + +P     +P       +  +   + + L       L  
Sbjct: 92  ELSRLARDLPRLLDPLLAWLVALPDRAQAVPVPESLRPVLEELTRNLRGLLQGFLEALVR 151

Query: 144 NGIDFIPRFASRFG--MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                + +  S  G     L     +   +I   +F  D   + +   ++    +    +
Sbjct: 152 WLQGLLAQGGSLLGFFTSLLGGVFQLFTALILSVYFLYDLPRLGRAALAVFPEPYQPLAQ 211

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            ++  +   +     G  ++A+  G ++G  +WL GVP   +LG +  +  +IP    + 
Sbjct: 212 DLAAKLNASVGGYVRGQLLVALCVGFLVGLGFWLVGVPLAASLGFLAGVFNLIPFVGVVV 271

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               ++ L   G +  A    L       +    L P +VG   +L  +     ++ G  
Sbjct: 272 SGVPALLLAATGGLGKAALALLVMVAANQLEAHVLGPLIVGRATRLHPVTAIAAILTGGT 331

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             GL G  +     A + V+ ++     +  +E
Sbjct: 332 LFGLWGALLAVPAAAFLKVVLEDYYKGSRFYRE 364


>gi|312112992|ref|YP_004010588.1| hypothetical protein Rvan_0199 [Rhodomicrobium vannielii ATCC
           17100]
 gi|311218121|gb|ADP69489.1| protein of unknown function UPF0118 [Rhodomicrobium vannielii ATCC
           17100]
          Length = 376

 Score = 96.1 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 58/356 (16%), Positives = 120/356 (33%), Gaps = 20/356 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L+P      +I+ +  + L        P  +  ++ +   P+     ++        A  
Sbjct: 7   LSPHATFWVVIVALATMGLMVFSDVLMPFAAGFVLAYLFQPLVERL-NRIGVHRGAAAFA 65

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV-----PRWLSDIPGGMWAS 120
               +  +FI     L    + ++++    + +  Q          P++L  +   +   
Sbjct: 66  IIAVLSLIFIAIFALLIPPLVDQLRQFAQDLPVYYQRARAYLWENYPQYLRSLQSTVQQQ 125

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E         Q +  +   +LK      +          F +    +    I  FF  RD
Sbjct: 126 EGGAA--GQAQDVAGMVAGYLKGLAESSLA---------FFNTLALLFLTPIVTFFLLRD 174

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +DSL         +K++  V   I     GM I+     +       L G+  
Sbjct: 175 WDQMFASIDSLLPKRDAPTIRKLAGEVDDTISGYLRGMFIVLSILSIFYMVTLGLIGLNY 234

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--DKTLR 297
            + +G+   I++ +P  G+           L +     +    + G      +     L 
Sbjct: 235 GLLIGLFAGIISFVPYLGSTSGLLVAGGVALAQFAPDYSMVALVIGVFIFGQIIEGNVLT 294

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           P +VG  ++L  +   F LV     +G  GL I   L A+I V+ + +I   +E++
Sbjct: 295 PNIVGNQVRLHPVWLLFALVAAGYLLGFTGLLISVPLAAVIGVLVRFAIRKYQESE 350


>gi|89100980|ref|ZP_01173825.1| hypothetical protein B14911_01700 [Bacillus sp. NRRL B-14911]
 gi|89084316|gb|EAR63472.1| hypothetical protein B14911_01700 [Bacillus sp. NRRL B-14911]
          Length = 372

 Score = 96.1 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 49/310 (15%), Positives = 108/310 (34%), Gaps = 11/310 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P  +A  I +   P+                    ++V+ ++ +      Y     + 
Sbjct: 58  IFPFAAAAFITYLLHPVVERLHEAGLHRG--------LAVIIIYTLFFGGTGYALYKGLP 109

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            ++ ++    +H   +     +    +   +  T     P  L+I          +D + 
Sbjct: 110 AIIVQIRDLAEHAPQLADQYREW---LLLLQSKTSQWPEPVQLRIDEGIQSLEASLDRLL 166

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
             A  F    L++ L +I +    F+  +D   + + +  L    +        R   K 
Sbjct: 167 SRAMAFAGAILNFALILIIIPFISFYMLKDFLLMKKAVWYLTPKKWRESGSLFLRDADKS 226

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G  ++    G +    +W+AG+   + LG I     +IP   PI     ++ + 
Sbjct: 227 LGSYIRGQLLVCAVIGALSSLFFWIAGIKYPLLLGAIIGATNVIPYFGPIIGAVPAVLIA 286

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              ++       +   +  F+    L P +VG  + +  L   F L+ G    G+ GL +
Sbjct: 287 STMSVKMIIFAAVIVMVLQFLEGNILSPLIVGKSLHMHPLLIMFSLLAGGEIAGVAGLIL 346

Query: 331 GPVLMALIAV 340
              ++A++ V
Sbjct: 347 AVPVLAVLKV 356


>gi|319934792|ref|ZP_08009237.1| hypothetical protein HMPREF9488_00068 [Coprobacillus sp. 29_1]
 gi|319810169|gb|EFW06531.1| hypothetical protein HMPREF9488_00068 [Coprobacillus sp. 29_1]
          Length = 381

 Score = 96.1 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 118/352 (33%), Gaps = 20/352 (5%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE-----ESSTFLAVIATVSV 70
           IM  I   +  +K F        I+ F        FI K             A+++ + V
Sbjct: 35  IMSFIGTLISIIKPFII----GFILAFIFNIPMKYFIKKLPIENDKTRKLISAILSVLLV 90

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           M +  + ++ +    +  ++ L+  +    +    +  WL+     +  S      +   
Sbjct: 91  MLVIAIVIMVVLPQVIENVRTLIDNLPEIFK---QIEEWLNYFLKEVKISPDIMTKVEEF 147

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           Q     +     +  +  I    S F    ++  +  +  I  LF        + +Q+  
Sbjct: 148 QQTLGQTILSKLSTWVPGIALGVSHFTTGVINIFMGFVMAIYMLF----SKDKLMRQVKR 203

Query: 191 LGEHLFPA----YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           +G+         +   ++++      +   G    ++  G++      L  +P      V
Sbjct: 204 VGKAFLTEKQFYHATDVAQLTSSTFENFLAGQLTESVIIGVLCYIGCILLDIPYASIAAV 263

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +     +IP   PI    +S  L++  +   A    ++  +        + P +VG  + 
Sbjct: 264 VIGFTNIIPYFGPIIGAFISSVLIVFVSPMKAVIFLIFSTLLQQFESNLIYPHVVGNSVG 323

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L  L   F +  G    G+ G+  G    ++I  + +         K+++S 
Sbjct: 324 LSALWVLFAVSAGGGLFGIPGMIFGLPTFSVIYELLRRWTNHRLNQKKQLSK 375


>gi|257899989|ref|ZP_05679642.1| conserved hypothetical protein [Enterococcus faecium Com15]
 gi|257837901|gb|EEV62975.1| conserved hypothetical protein [Enterococcus faecium Com15]
          Length = 393

 Score = 96.1 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 55/332 (16%), Positives = 122/332 (36%), Gaps = 10/332 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +     P+L ALI+ +   P+          S     +I  V ++ L  +  ++L  + 
Sbjct: 50  IIATILPPLLFALILYYLLEPVIKRLSKHL--SRNLSVIIVYVIILFLLGLGSVWLVPFL 107

Query: 86  MLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
             + K L+S +  L       + ++L   P     ++ +T        +      + ++ 
Sbjct: 108 EEQTKTLISSLPDLFQDFQESLRQFLEKTPFADSFNQFFTSIDDVTSDIAGFIGNYWESG 167

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
                 +  S          +++    I  FF  R+     Q + ++    F   +K ++
Sbjct: 168 -----AQRISNIFSTVTAIFITLFTGPIVTFFLLRNPQKFYQSVLAIVPPAFRTDFKNLT 222

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
           +I  + + S   G  I +   G V    + L G+     L +   ++ +IP  G  I+F 
Sbjct: 223 KIANQQLGSFLKGQIIASFILGAVYWVCFLLIGLEFASVLAISAGLLCIIPYIGPFIAFF 282

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
              I             + +W A++L   D  + P ++G  +++  +     L+     M
Sbjct: 283 PGLIIAFQDSTFMAVKFVIVWFAVQLLHGDLVI-PRVMGDRLQIHPITILIVLLVMGDLM 341

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G++G+  G  +  L+ ++        K+   K
Sbjct: 342 GIVGVIFGIPIYTLVKLLVTFIFRKFKQRYNK 373


>gi|239637047|ref|ZP_04678041.1| conserved hypothetical protein [Staphylococcus warneri L37603]
 gi|239597397|gb|EEQ79900.1| conserved hypothetical protein [Staphylococcus warneri L37603]
          Length = 413

 Score = 95.7 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 135/358 (37%), Gaps = 18/358 (5%)

Query: 10  GIMRWMIMFIILVSL----YFLKGFF-------APVLSALIIGFTSWPIYSSFISKKEES 58
           G++  +++ I++       Y  + F        AP++ +LII +   P+ +     +   
Sbjct: 43  GLLALVLLGIVIFIFDKVSYVFEPFIIIFNTIAAPIIVSLIIFYLFNPLVNLMERYRIPR 102

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEM-KELVSKVVLANQHGIPVPRWLSDIPGGM 117
                ++  + +    +  +  +    +  +  +L S +  + Q+       ++ +    
Sbjct: 103 -----LVGIMIIYIAIVGIIALIVNLLIPVIGSQLGSFINNSPQYFKKFTNTINKLTSNS 157

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
             +  +++      SL     T L      F  + A+ F     +  + I+     LFF 
Sbjct: 158 IFAGYYSQINDQLNSLTKKIPTMLSDYFDGFGSKLAT-FAEAVANVGVVIVTTPFVLFFM 216

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            +DG        ++    F   +  +   +   + S   G  I++   G++L   Y + G
Sbjct: 217 LKDGHKFKDFTTNIMPPKFRKDFHDLLEKMSVQVGSYIQGQIIVSFCIGVLLFIGYSIIG 276

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           +   + L  I A+ +++P   P    + +I + I  +      L +   +  F     + 
Sbjct: 277 LKYSLILACIAAVTSVVPYLGPTIAISPAIIIAIITSPLMVLKLAIVWTLVQFFEGHFIS 336

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           P ++G  +K+  L   F L+     +G++G+ +G    A++ V+     +  K    +
Sbjct: 337 PNIMGKTLKIHPLTIIFILLCAGNLLGIVGVILGIPGYAVLKVLVSHVFLLFKRRYNR 394


>gi|25029191|ref|NP_739245.1| putative integral membrane protein [Corynebacterium efficiens
           YS-314]
 gi|259505812|ref|ZP_05748714.1| integral membrane protein [Corynebacterium efficiens YS-314]
 gi|23494479|dbj|BAC19445.1| putative integral membrane protein [Corynebacterium efficiens
           YS-314]
 gi|259166600|gb|EEW51154.1| integral membrane protein [Corynebacterium efficiens YS-314]
          Length = 461

 Score = 95.7 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 93/293 (31%), Gaps = 28/293 (9%)

Query: 43  TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH 102
             WP+       K       A+   +    +       +    + + +++  +     Q 
Sbjct: 109 VLWPVTKFLRDHKWP-PALAAIATILGFFLIIGGIFSAIAPSVISQSQQVYERAYGGIQS 167

Query: 103 GIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD 162
                              L  +  + P +L +        +   +I   AS        
Sbjct: 168 -------------------LLDQLQNGPLNLDLGRVDEFVNDATQWIQDQASNIASGVFT 208

Query: 163 YC-------LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
                    ++I+ M +  FFF +DG +    L          +  ++       +    
Sbjct: 209 GVSAATTVVVTIVVMFVLTFFFLKDGVNFLPWLRKYTGDNAGWHLTEVLTRSWNTLAGFV 268

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGN 274
               ++++ + +++G    +  VP  +AL VIT     IP  GA  +     I  L+   
Sbjct: 269 RTQALVSLVDAVLIGIGLVILQVPLALALAVITFFGGFIPIIGAFTAGALAVIIALVTNG 328

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           + NA  +     +   I    L+PFL G  ++L        +  G    G+LG
Sbjct: 329 LTNALLVLALIVLVQQIEGNVLQPFLQGKAMQLHAAIVLLSVTVGSTLFGILG 381


>gi|146319150|ref|YP_001198862.1| permease [Streptococcus suis 05ZYH33]
 gi|145689956|gb|ABP90462.1| Predicted permease [Streptococcus suis 05ZYH33]
          Length = 391

 Score = 95.7 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 56/329 (17%), Positives = 123/329 (37%), Gaps = 13/329 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           FL+    P++   ++ +   P+       K           TV +  LF++  L + +  
Sbjct: 55  FLEIVLLPMILTGLLYYLLNPMVDWMEKHKISR--------TVGISILFVLISLLIIWGL 106

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            + +  +  +V    Q+     + +     G+   + + +       +       +    
Sbjct: 107 AVAIPSIQEQVTSFAQNLPSNIQKIEGQVTGLLQDQRFEQFRPTALEMLNKVNDQIVAYA 166

Query: 146 IDF---IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
             F      +AS          ++I+ M   LF+  RDG  +++ +       +      
Sbjct: 167 QKFSSSAVNWASNLISTASQIIVAILIMPFILFYLLRDGQYLNKHITQYLPTKWREPIGT 226

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
           +   V   + +   G   +AI   L+    + + G+   + LGV+   + +IP  G+ ++
Sbjct: 227 VLSDVNGQLSNYVRGQVTVAIIVALMFSVMFSIIGLSYPITLGVMAGFLNLIPYLGSFLA 286

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
                I  LI G I     + +   IE  I  + + P ++G  + +  +   F L+   +
Sbjct: 287 MIPAVILGLIAGPIML-IKVLVVFMIEQTIEGRFVTPLIIGSSLSIHPITILFVLLTAGQ 345

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             G+LG+ +G  + A I V+ K +    K
Sbjct: 346 MYGVLGVLLGIPIYASIKVLVKAAFEWYK 374


>gi|24379852|ref|NP_721807.1| putative membrane protein; permease [Streptococcus mutans UA159]
 gi|24377825|gb|AAN59113.1|AE014978_4 putative membrane protein; possible permease [Streptococcus mutans
           UA159]
          Length = 389

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 58/327 (17%), Positives = 119/327 (36%), Gaps = 9/327 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           FL     P++ + ++ +   PI      +         V+A   V  +    L++     
Sbjct: 52  FLAVIMLPLVISALLYYLLKPIVDFIERRGTSR-----VMAITIVFVIIAGLLVWGIANF 106

Query: 86  MLEMKE-LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
              + E L S +     +   V   +S +      +    +      +    +  + +T 
Sbjct: 107 FPMLNEQLTSFIKYLPSYVRSVDAQVSKLLRNDLLASFRPQIEDAVTNFSQKAVDYAETF 166

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               +  +A  F  +     ++II     +F+  RD   + +   S           +I 
Sbjct: 167 SKGAV-TWAGNFASLIARVTVAIIISPFIVFYLLRDSSKMKEAFVSYLPTKMRQPIHRIL 225

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
             V + +     G   +AI  G +    + + G+   V  G+I   + MIP  G+ ++  
Sbjct: 226 GDVNRQLAGYVQGQVTVAIIVGFMFSIMFTIIGLRYAVTFGIIAGFLNMIPYLGSFLATI 285

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
            V I  L++G       + L   +E  I  + + P ++G  + +  +   F L+      
Sbjct: 286 PVFILALVEG-PVMVVKVALVFIVEQTIEGRFVSPLVLGSKLSIHPITIMFILLTAGSMF 344

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIK 350
           G+ G+F+G  + A I V+ KE     K
Sbjct: 345 GVWGVFLGIPVYASIKVVVKEIFEWYK 371


>gi|37521449|ref|NP_924826.1| hypothetical protein glr1880 [Gloeobacter violaceus PCC 7421]
 gi|35212446|dbj|BAC89821.1| glr1880 [Gloeobacter violaceus PCC 7421]
          Length = 351

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 60/354 (16%), Positives = 127/354 (35%), Gaps = 22/354 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFF----APVLSALIIGFTSWPIYSSFISKKEESS 59
           T ++   ++R++++F    +L  L  +F         A ++                  +
Sbjct: 15  TRISTNALVRFLLLFACGWALLTLFSYFEYVITTFTFAAVLALLLNYPARYLERFVGRGA 74

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
           +   VI    ++ + +V    L    + ++++L + +V            L +       
Sbjct: 75  SLAVVIVLSLILMVVVV--AGLGVTIVGQVQQLANAIVNTFNSSADPLTRLEEFLTARRI 132

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                        L   +  F+  +   F+  +            ++ I +++  FF   
Sbjct: 133 RIDLEPVQQQATELARNTIGFILGSLPSFLGSY------------VTFIVIVVVAFFMLA 180

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  I   L      L  A   + S+ V       F G  +IA+  G      + L  +P
Sbjct: 181 DGGRIWGLLIKF---LPAAQRVRFSQSVQSNFAGFFQGQLLIALFLGTASFVVFTLLQIP 237

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             + L +  A+  +IPG GA +    V + +L++G+      LF        + D  + P
Sbjct: 238 FALVLAITVALFDLIPGIGATLGVGLVCLTVLVQGDWVATLKLFAACIALQQVQDNFIAP 297

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            ++   + L  +  FF L+ G R  GL+G+F+   +  ++  +        K+ 
Sbjct: 298 RVMQSTVNLNPVIVFFALLVGARIGGLIGVFLAVPVAGVVVSLLDVEEAQSKQT 351


>gi|222148178|ref|YP_002549135.1| permease [Agrobacterium vitis S4]
 gi|221735166|gb|ACM36129.1| permease [Agrobacterium vitis S4]
          Length = 379

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/350 (14%), Positives = 125/350 (35%), Gaps = 11/350 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q +     + +++  L        P ++ + + +   P+      +   S     V+  V
Sbjct: 13  QVLFGIGTLAVVIAFLLTFSSILLPFVAGMALAYFLDPVADRLE-RLGLSRMMATVLILV 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           S + +F++ L+ +    + ++ + ++ +       +   + L       W  +     +S
Sbjct: 72  SFVVIFVLSLVIIIPVLVTQLNDFITNIPDY----VSQLQALIAKSNASWVPKWLNGQVS 127

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
              +    + +     G  FI    S+    G   LD    ++   +  F+   D   + 
Sbjct: 128 TQMAAIKGNFSRYLAEGAGFIGTLLSQLWNSGKALLDIISLLVVTPVVAFYLLLDWDRMM 187

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            +LDSL         ++I+R + + I     G   + +  G+       L G+   + +G
Sbjct: 188 AKLDSLIPRNQVGAVREIAREMNRTIAGFVRGQGSLCLILGIYYAVGLSLIGLNFGLLIG 247

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVG 302
             T +++ IP         +++ +       +        ++     F+    L+P LVG
Sbjct: 248 FFTGMISFIPYVGSSVGLVLALGMAAVQFWPDYLWVVITGVFFFTGQFLEGNVLQPKLVG 307

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             + L  +   F +       G LG+ +     A + V+ + ++    ++
Sbjct: 308 SSVGLHPVWLMFAMFAFGSLFGFLGVLVAVPCAAAVGVLVRFAVRRYLDS 357


>gi|323488328|ref|ZP_08093576.1| permease [Planococcus donghaensis MPA1U2]
 gi|323397986|gb|EGA90784.1| permease [Planococcus donghaensis MPA1U2]
          Length = 413

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/336 (15%), Positives = 122/336 (36%), Gaps = 15/336 (4%)

Query: 25  YFLKGFF-------APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           +  + F         P++ A I+ +   P+ +        +     + +   V  +    
Sbjct: 48  FVFQPFVAFFDVMGPPLIMAGILYYLLNPLINWME-----NKNISRIASISMVFVVVAGL 102

Query: 78  LLFLFYYGMLEMKE-LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
           L +     +  ++E L+S +     +       +         S+L T+ +   + L   
Sbjct: 103 LAWGIATLIPIIREQLMSLIDNWQDYLNTFISQIDHFFKNDLLSQLQTQLMGGTEPLSTS 162

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                +      +    S FG +     L++I     LF+  +DG      +  L     
Sbjct: 163 ITDQTENVVGSTVTGLGSVFG-VLSTTLLALITTPFILFYLLKDGHHFPYHIMKLLPSKM 221

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
             +   + R +   I     G  ++A   GL+    + L G+   + L ++  ++ +IP 
Sbjct: 222 REHSYLLLREMNLQISQYIRGQLLVAFFVGLMFWIGFSLVGLKYALTLSIMAGVLNLIPF 281

Query: 257 -GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ I+F  + I  ++  +      + +   IE  +  +  +P ++G  +++  +     
Sbjct: 282 LGSFIAFIPIVIIAIVVHSPIMLVKVLVVFFIEQTLEGRVFQPLILGSNLQIHPITIIAV 341

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      G++G+ +G    A+I VI+       + 
Sbjct: 342 LLTAGNLFGVVGVILGIPAYAVIKVIFSHLFSWYQR 377


>gi|257886316|ref|ZP_05665969.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257822172|gb|EEV49302.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
          Length = 393

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/332 (16%), Positives = 121/332 (36%), Gaps = 10/332 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +     P+L ALI+ +   P+          S     +I  V ++ L  +  ++L  + 
Sbjct: 50  IIATILPPLLFALILYYLLEPVIKRLSKHL--SRNLSVIIVYVIILFLLGLGSVWLVPFL 107

Query: 86  MLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
             + K L+S +  L       + ++L   P     ++ +         +      + ++ 
Sbjct: 108 EEQAKTLISSLPDLFQDFQESLRQFLEKTPFADSFNQFFASIDDVTSDIAGFIGNYWESG 167

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
                 +  S          +++    I  FF  R+     Q + ++    F   +K ++
Sbjct: 168 -----AQRISNIFSTVTAIFITLFTGPIVAFFLLRNPQKFYQSVLAIVPPAFRTDFKNLT 222

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
           +I  + + S   G  I +   G V    + L G+     L +   ++ +IP  G  I+F 
Sbjct: 223 KIANQQLGSFLKGQIIASFILGAVYWVCFLLIGLEFASVLAISAGLLCIIPYIGPFIAFF 282

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
              I             + +W A++L   D  + P ++G  +++  +     L+     M
Sbjct: 283 PGLIIAFQDSTFMAVKFVIVWFAVQLLHGDLVI-PRVMGDRLQIHPITILIVLLVMGDLM 341

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G++G+  G  +  L+ ++        K+   K
Sbjct: 342 GIVGVIFGIPIYTLVKLLVTFIFRKFKQRYNK 373


>gi|310815332|ref|YP_003963296.1| Lipocalin-related protein and Bos/Can/Equ allergen
           [Ketogulonicigenium vulgare Y25]
 gi|308754067|gb|ADO41996.1| Lipocalin-related protein and Bos/Can/Equ allergen
           [Ketogulonicigenium vulgare Y25]
          Length = 363

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 56/340 (16%), Positives = 122/340 (35%), Gaps = 10/340 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             I L  LY + G   P +    I +   P+             +   I ++  + LF +
Sbjct: 22  AAIFLALLYTVSGVLLPFVLGAAIAYLLDPVADRMERW-GIGRVWAVSIISLVGVLLFTI 80

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            LL L    + +  +LV+ V    +    +  W  D       S+  ++      +    
Sbjct: 81  GLLILVPTLINQALQLVNTVPSLVE---QLTNWARD--SFPELSDEQSQMRQTLNTTLTN 135

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               +++ G + I        M  +   + +    +  F+   D   + + +D L     
Sbjct: 136 IGNAIQSRGGELIGGLVGS-AMSVVSIAMVLFIAPVVAFYLLLDWDRMVRHVDDLIPLPR 194

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
            A  ++I   + + + +   G  ++ +  G+       LAG+   + +G    +++ IP 
Sbjct: 195 RAEVRRIFAEIDQTLSAFIRGQGLVCVVLGVFYAVTLMLAGLNFGLVIGFGAGMISFIPY 254

Query: 257 GAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
              +     +I L +    G+  +   +     I  F+    L P L+GG + L  +   
Sbjct: 255 VGTLVGGVAAIGLALYQFWGDWLHVAIIVAIFLIGQFLEGNVLVPKLMGGSVGLHPVWLI 314

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           F +       G +G+ +   + A+I V+ +  +   KE  
Sbjct: 315 FAISVFGALFGFVGMLVAVPVAAIIGVLIRFGLQKYKEGP 354


>gi|150377269|ref|YP_001313864.1| hypothetical protein Smed_5154 [Sinorhizobium medicae WSM419]
 gi|150031816|gb|ABR63931.1| protein of unknown function UPF0118 [Sinorhizobium medicae WSM419]
          Length = 663

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/345 (14%), Positives = 120/345 (34%), Gaps = 16/345 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           ++     +  LYF +  F P+  A+++ F   P+ S    ++      +AV+ TV++  L
Sbjct: 40  FVATAATVAVLYFARDVFLPLAIAILLTFALAPLVSKL--RRVGCPRSVAVVGTVTIAFL 97

Query: 74  FIVPLLFLFYYGMLEMKE--------LVSKVVLANQHGI--PVPRWLSDIPG--GMWASE 121
           F+     +    + E+ +        +V KV    + G    +   L  +     +  S 
Sbjct: 98  FLFAFSGVVAMQVSEVAQNLPTYQYNIVEKVRSLKETGSESQILDRLGRVMERINIEISR 157

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              +  + P++        ++                  L    +   +++ + F   + 
Sbjct: 158 PEPELRASPEAEPERKPVLVEIFSPQRPVETLKNIINPLLGPLATTGLVLVVVIFMLFER 217

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +  +   L  +       +  +     +    L   ++ I  G+ L     L G+P+ 
Sbjct: 218 EDLRDRFIRLVGYGDLHRTTEALQDAGARVGRYLLMQLVVNITYGIPLAIGLSLLGIPNA 277

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF--IVDKTLRPF 299
           V  G++  ++  +P   P+   A+ ++L        +  ++      +   + +  + P+
Sbjct: 278 VLWGMLAILLRFVPYIGPVIAAALPLFLAFAAAPGWSLLIWTAALFIVLELLSNNVVEPW 337

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L G    L  L      +      G +GL +   L   + V+ + 
Sbjct: 338 LYGSRTGLSPLAIIVSAIFWAWLWGPVGLVLSTPLTVCLVVLGRH 382


>gi|328945816|gb|EGG39967.1| permease [Streptococcus sanguinis SK1087]
          Length = 360

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 66/342 (19%), Positives = 124/342 (36%), Gaps = 17/342 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV---IATVSVMCLFIV 76
           I   L  L   F+P++   ++ F             ++      +   +A V  + +  +
Sbjct: 27  IWSGLQSLTSVFSPIILGGVLAFIFNVPMKKLEDFLDKCRVPWKLQRGLALVLEVLILAL 86

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            +  +    +  +   V+++        P V +WL     G+ +S          Q+   
Sbjct: 87  IMTGIVSIVVPTLTTAVNQLSATIGKVAPQVAKWLQQ--SGLLSSSQLKDLTKQLQNSD- 143

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                +    I  +         IF ++  S+I  I  +F F      +      L + L
Sbjct: 144 -----IVNRAISLLGSLTGNISAIFGNFF-SVIMSIFLMFAFLSSKEHLQTITSRLLQVL 197

Query: 196 FPAYWKKISRIVPKVIRST----FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
            P    K    V  VI  T     +G  I A+  G+++  AY L G+P     GV+  ++
Sbjct: 198 LPEKAVKRLSYVGSVIVETYDKFLMGQMIEAVIVGILVFIAYSLTGLPYAALTGVLAGVL 257

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           + IP   P S  A+    +   + + A            I    + P +VG  + LP L 
Sbjct: 258 SFIPYIGPFSACALGAIFIFTDSPWKALLSIAVFQGVQLIEGNVIYPRVVGQSVGLPTLF 317

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           T    + G    GL+G+     + A+I  + +E ++  +E K
Sbjct: 318 TLAAALIGGNLFGLVGMIFFTPIFAVIYRLVREFVVEKEEKK 359


>gi|139436945|ref|ZP_01771105.1| Hypothetical protein COLAER_00078 [Collinsella aerofaciens ATCC
           25986]
 gi|133776592|gb|EBA40412.1| Hypothetical protein COLAER_00078 [Collinsella aerofaciens ATCC
           25986]
          Length = 469

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/334 (14%), Positives = 118/334 (35%), Gaps = 4/334 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I  +I   +  L      +    II F   PI +        +    +++A + V+ +
Sbjct: 29  IVIAAVIFNLMGILAPVIEFLAVGSIIAFVMSPITNWLEHH-GVNRGIGSLVALIVVVAV 87

Query: 74  FIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
            +  +  L      ++ E++S++       G  +   +S        +    ++L    S
Sbjct: 88  LVGVVCILSPILFGQIMEVLSRLPEQLRVAGGDLNEMISH--AKTLNNTPLKEYLDDNLS 145

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +   +   +     + R               I   ++  ++   D   +  ++ ++ 
Sbjct: 146 SLVTVASKYVSQIAAELGRGVFPLITNTASQLFVIFLGLVLAYWMACDYPRMHHEICTII 205

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                  ++ +  I+ + +     GM + +I  G +    + + G P    + + T IM 
Sbjct: 206 GQEKETSYRFMVAILSRSVGGYMRGMVVTSICGGFLAFIGFMIIGHPYAALMAIFTGIMH 265

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++P   P    A++  L    +   A    +   I   + D  + P ++   +++  + +
Sbjct: 266 LVPVVGPWVSAAIATVLGFMFSPMLALWTLIVTMIAQNVTDNVISPKVMQSSVQVHPIMS 325

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
              LV G   MG +G+ I   L A +  I+    
Sbjct: 326 LTALVIGSALMGPIGMIIAIPLCAALKGIFVYYF 359


>gi|256761322|ref|ZP_05501902.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256682573|gb|EEU22268.1| conserved hypothetical protein [Enterococcus faecalis T3]
          Length = 394

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 57/334 (17%), Positives = 114/334 (34%), Gaps = 6/334 (1%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
                    PVL  +I+ +   P+      K      +   I  V ++ L ++  L LF 
Sbjct: 45  FVIFSAVLGPVLFGIILFYLLNPMVKRLEKKIP--RVWAIAILYVLIIALLVLAGLQLFP 102

Query: 84  YGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
               + +EL+ +     +  +  V  +++  P                  L    + F  
Sbjct: 103 IIQDQTEELIKQFPSFWKSTLQTVQEFMAKTPFAKDLESANESINQLWGKLANSFKDFAG 162

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            + +    +             L++    I  FF  +D       +  +    F   + +
Sbjct: 163 -DYLQTGAQGLGSVFSAVSSTFLTLFTGPIIAFFLLKDKEKFYSFVKGIIPPAFRPDFDE 221

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
            S+I    I     G  I ++  G++   A+ L G+     L +   I+ +IP  G  I+
Sbjct: 222 YSQIANIQIGDYLKGQVIASLVLGIMYWPAFLLIGLQFGSILALAAGILCIIPYIGPFIA 281

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F    I             + +W AI+L   D  + P ++G  +K+  +     L+    
Sbjct: 282 FIPGLIIAFQDSTFMVVKFVIVWFAIQLIHGDFVI-PRVMGDKLKVHPITILLVLLVMGE 340

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            +GL+G+  G  +  L+ V         K+   +
Sbjct: 341 LLGLMGVIFGIPMYCLVKVTVIYLFRKFKQRYNR 374


>gi|315162842|gb|EFU06859.1| conserved hypothetical protein [Enterococcus faecalis TX0645]
          Length = 394

 Score = 95.3 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 108/318 (33%), Gaps = 5/318 (1%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           PV+ A I+ +   PI      K+          + + +  L +  L++     + +++E 
Sbjct: 65  PVIMAGILYYLLNPIVDYLEKKQISRVW-----SIIGLFILIVALLIWGGIVIVPKIREQ 119

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
               V      I      S           + + L       + S   +  N   F  + 
Sbjct: 120 SVSFVNHFPQYIDTIDQKSQEILSDPLFAQFREQLEAAGDKVVSSLGTIIKNVSTFTVQG 179

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
              F        ++II M   L +  +DG +++  L             K+   V   + 
Sbjct: 180 IGNFFGAVATIFVAIITMPFILSYLLKDGKNLAPYLMKFLPVKMRKPTLKVLAEVNDQVS 239

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
           S   G   +A    ++    + + G+   V LG+    + +IP          +++L I 
Sbjct: 240 SYIRGQLTVAFAVAIMFMIGFSVIGLDYAVTLGIAAGFLNLIPYLGSFLAMIPAVFLGIV 299

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
                   + +  AIE  +  + + P ++G  + +  +     L+   +  G++G+ +G 
Sbjct: 300 SGPALLIKVLIVFAIEQTVEGRFISPLVLGSQLSIHPVTILVVLLTSGKLFGIVGVILGI 359

Query: 333 VLMALIAVIWKESIMAIK 350
            + A   VI        +
Sbjct: 360 PVYAAAKVIITHIFEWYQ 377


>gi|302550444|ref|ZP_07302786.1| membrane protein [Streptomyces viridochromogenes DSM 40736]
 gi|302468062|gb|EFL31155.1| membrane protein [Streptomyces viridochromogenes DSM 40736]
          Length = 441

 Score = 95.3 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/348 (14%), Positives = 117/348 (33%), Gaps = 22/348 (6%)

Query: 8   PQGIMRWMIMFIILVSLYFL--------KGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           P+ + R M++ + LV+ + L         G    +L AL +     P     +++     
Sbjct: 68  PRWLPRAMVLALALVAAFQLGSWAFHRLTGLLVGILIALFLALGIEPPVGRLVAR-GMRR 126

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
              A++  ++++       L    +   ++ ++V          I    W++       +
Sbjct: 127 GLAALLVCLAMVLGATGFFLLFGSFLAGQISDIVEDFPGYFDSFI---GWINRTFHTELS 183

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                  L     L+   +                 F    L   + ++ + +  F+F  
Sbjct: 184 RADIQGRLLRSDWLRRYVQKS---------AGGVFDFSASVLGGLVRLLTIFLFSFYFAA 234

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  + + L SL      +   +   I             ++A+   +       L GVP
Sbjct: 235 DGPRLRRALCSLLPPAKQSEVLRAWEIAVDKTSGYLYSRGLMALISAVAHFIMLALLGVP 294

Query: 240 SHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             +AL V   +++  IP        AV I      + + A  + ++  I   + +  ++P
Sbjct: 295 YALALAVWVGVVSQFIPVIGTYLAAAVPIVAAFAVDPWYAVVVLIFVVIYQQVENYLIQP 354

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            L    + +     F  ++ G   +G+ G  I   ++A +   +   +
Sbjct: 355 KLTSKTVDIHPAVAFGSVIAGTALLGVAGTLIAIPVVATLQTFFSAYV 402


>gi|89053547|ref|YP_508998.1| hypothetical protein Jann_1056 [Jannaschia sp. CCS1]
 gi|88863096|gb|ABD53973.1| protein of unknown function UPF0118 [Jannaschia sp. CCS1]
          Length = 398

 Score = 95.3 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/324 (14%), Positives = 109/324 (33%), Gaps = 14/324 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L    I +   P+      +   S      +  V ++   +  +L +    + +  
Sbjct: 64  IMPFLVGGAIAYFLDPVADRLE-RLGCSRAMATTLIFVIMIVAVVTIVLAIVPLLVQQAS 122

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            LV+      +            PG           LS+           +++ G + + 
Sbjct: 123 GLVAAAPGIFEQLRDFLT--ERFPGAFSDGSPVQTSLSNLGET-------IQSRGAELLQ 173

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              S    +       ++  ++A F+   D   +  ++D L         + ++  + + 
Sbjct: 174 TVLSSAAGVVNVIVFIVVVPVVA-FYMLLDWDRMIARIDQLLPRDHAPTIRMLAGRIDRT 232

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G   + +  G     A  + G+   + +G+I  ++  IP    +    ++I L 
Sbjct: 233 LASFVRGQGTVCLVLGTFYAVALMVVGLQFGLVVGLIAGLLTFIPYVGALVGGVLAIGLA 292

Query: 271 IK---GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +    G  +    +     +   +    L P LVG  + L  +   F L       G +G
Sbjct: 293 LFQFWGEWWWIISVVAIFMVGQALEGNVLTPKLVGSSVGLHPVWLIFALSAFGTVFGFVG 352

Query: 328 LFIGPVLMALIAVIWKESIMAIKE 351
           + +G  + A+I V+ +  +   +E
Sbjct: 353 MLVGVPVAAVIGVLVRYFVERYQE 376


>gi|288919568|ref|ZP_06413898.1| protein of unknown function UPF0118 [Frankia sp. EUN1f]
 gi|288349074|gb|EFC83321.1| protein of unknown function UPF0118 [Frankia sp. EUN1f]
          Length = 401

 Score = 95.3 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/313 (15%), Positives = 104/313 (33%), Gaps = 14/313 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           ++    PV++ L+I     P+   F  +        A  A +    +     + + +   
Sbjct: 83  VRTVVIPVIAGLLIAALIHPLAQRF-QRLGLPRLGAAFAALIVFFLIVTGAGVAVGFNAA 141

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E+  +  +V         V  +L+D P  +   ++        +S+         T+  
Sbjct: 142 NEIPAVADQVSEGID---QVRDYLTDGPFHLSEGQIDDLVDDIRKSI---------TDNR 189

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +         +  +   SI+  + + FFF  DG  I   + +          +   R 
Sbjct: 190 GKLVSGVLSTASVAAEVLTSILVALFSTFFFLYDGERIWDWIVTRFPAGAEDRVRGAGRE 249

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAV 265
               I     G   +A  + + +       G P    L ++T     IP  GA ++  A 
Sbjct: 250 AWNTITGYIRGTVFVAAVDAIGITIGLLAVGAPLVAPLALLTFFGGFIPIIGATVAGIAA 309

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            + +L+   + +A  +         +    L+P ++   ++L  L     L  G    G+
Sbjct: 310 VLVVLVSNGLGDALIILGVVIAVQQLEGHLLQPLIMRRAVRLHPLAIVIALSAGSVLAGI 369

Query: 326 LGLFIGPVLMALI 338
            G       +A++
Sbjct: 370 PGAIAAVPFVAVV 382


>gi|167036456|ref|YP_001664034.1| hypothetical protein Teth39_0025 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|166855290|gb|ABY93698.1| protein of unknown function UPF0118 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
          Length = 392

 Score = 95.3 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/349 (14%), Positives = 126/349 (36%), Gaps = 6/349 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R   +  + ++   +  I  + ++ +  F  P + AL++     P  +    K +    
Sbjct: 44  LRYGDIIKKTLLIVAVFIIFYLIIFKIIPFLMPFVVALLLAVIIDPGVNFLEKKLKVPRG 103

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             + I  + ++ +    +       + E+  L     ++  +   +   + ++   +   
Sbjct: 104 LASFILLLILIGVIGSLIAISITQLIYELSSL---AEISTNYANTINDIILNLVDRIRMY 160

Query: 121 EL-WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            +    +++      + S     +     +  +   F     ++    +  ++A FF  +
Sbjct: 161 YISLPPNITSLIESNMQSILNYVSLFAKNLATWLLNFATKLPNFFFMTLITLVATFFISK 220

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D   I   +       +  + K I   + K        +  I +   L +     + G  
Sbjct: 221 DKQLILDFIKRQIPSHWAQHAKSIQVNLLKTFFGYLRAVATIMLITFLEVSIGLAMIGFD 280

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
               LG++  I+  +P  G+       ++Y +I  N      L +   + + +V + + P
Sbjct: 281 YPFLLGLLVTIVDALPVLGSGAVMVPWALYNIIMKNYMVGIYLLILYGLVV-VVRQIIEP 339

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            +VG  I L  L T   +  G +  G LGL IGPV + +   + +  I+
Sbjct: 340 KIVGQSIGLHPLVTLLSMFIGAKLFGALGLIIGPVFVVVFKALQRAEII 388


>gi|50914110|ref|YP_060082.1| hypothetical protein M6_Spy0764 [Streptococcus pyogenes MGAS10394]
 gi|50903184|gb|AAT86899.1| Hypothetical membrane spanning protein [Streptococcus pyogenes
           MGAS10394]
          Length = 393

 Score = 95.3 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 60/337 (17%), Positives = 124/337 (36%), Gaps = 7/337 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+ +  + F      P++ + I+ + + P+    I+    + T    I    +  LF+
Sbjct: 43  ISFLFMPVISFFAVIMLPLVISTILYYLTKPLVD-LINHLGPNRTTSIFIVFGLITLLFV 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +         ++   +  +             L +    +         L+H     +
Sbjct: 102 WAISGFVPMVQTQLTSFIEDLPKYVGKVNEEANKLLENEWLVSYKPQLQDMLTHTSQKAL 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   N ID+   FA     I     ++II     LF+F RD   +   L ++    
Sbjct: 162 DYAQSFSKNAIDWAGNFAGAIARIT----VAIIISPFILFYFLRDSSHMKNGLVNVLPLK 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   + K +     G   +AI  G +    + L G+   +  G+I   + MIP
Sbjct: 218 LRVPMVRVLGDINKQLSGYVQGQVTVAIVVGFMFSIMFSLVGLKYAITFGIIAGFLNMIP 277

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G+ ++   V I  +++G       L ++  IE  I  + + P ++G  + +  +   F
Sbjct: 278 YLGSFLAMIPVVIMAMVQGPFVLVKVLVIF-MIEQTIEGRFVAPLVLGNKLSIHPITIMF 336

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            L+      G+ G+F+   + A + V+ KE     K+
Sbjct: 337 LLLTAGSMFGVWGVFLVIPIYASVKVVIKELFDWYKK 373


>gi|319745230|gb|EFV97549.1| membrane protein [Streptococcus agalactiae ATCC 13813]
          Length = 396

 Score = 95.3 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 130/360 (36%), Gaps = 18/360 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYF----------LKGFFAPVLSALIIGFTSWPIYS---SF 51
           +LN Q ++  MI F++ ++++           +  F A ++  L+I    + +     +F
Sbjct: 18  ILNNQAVIALMITFLVFLTIFIFTKISFMFKPVFDFLAVLILPLVISGLLYYLLKPMVTF 77

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWL 110
           + K+        +     ++ L I  +         +++  +  +    N+  +    ++
Sbjct: 78  LEKRGIKRVTAILAVFTIIILLLIWAMSSFIPMMSNQLRHFMEDLPSYVNKVQMETSSFI 137

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
              P         +  LS+  S  +        N +D+    AS    +     ++ I  
Sbjct: 138 DHNPWLKSYKGEISSILSNISSQAVSYAEKFSKNVLDWAGNLASTVARVT----VATIMA 193

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
              LF+  RD   +      +          +I R +   +     G  I+AI  G++  
Sbjct: 194 PFILFYLLRDSRKMKNGFLMVLPTKLRQPTDRILREMNSQMSGYVQGQIIVAITVGVIFS 253

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
             Y + G+   V LG+I  ++ M+P             L +         + +   IE  
Sbjct: 254 IMYSIIGLRYGVTLGIIAGVLNMVPYLGSFVAQIPVFILALVAGPVMVVKVAIVFVIEQT 313

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +  + + P ++G  + +  +   F L+      G+ G+F+   + A I V+ KE     K
Sbjct: 314 LEGRFVSPLVLGNKLSIHPITIMFILLTSGAMFGVWGVFLSIPIYASIKVVVKELFDWYK 373


>gi|126725674|ref|ZP_01741516.1| Lipocalin-related protein and Bos/Can/Equ allergen [Rhodobacterales
           bacterium HTCC2150]
 gi|126704878|gb|EBA03969.1| Lipocalin-related protein and Bos/Can/Equ allergen [Rhodobacterales
           bacterium HTCC2150]
          Length = 357

 Score = 95.3 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 66/354 (18%), Positives = 132/354 (37%), Gaps = 15/354 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVS-LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M+  +   Q    W I+  +++  L+ L     P L    I +   PI      +   S 
Sbjct: 1   MKMGLPVQQQAKYWGIVVAVILGILWVLGDVIMPFLLGGAIAYCLDPIADRLE-RMGLSR 59

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
           T    + T+  + +FIV  L +    + +   LV     A              P  M A
Sbjct: 60  TIATTLITLLAILVFIVMALLVVPTLVRQSVALVEFAPQAFSDLQKFLT--EKFPSLMDA 117

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                + L             ++  G D +    +   +  L+  + ++ + +  F+   
Sbjct: 118 ESTLRQSLQSLGET-------IRAKGGDLLNGLVTS-AVSLLNILVLVVIVPVVAFYLLL 169

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D  ++  ++D L         ++++R + + + S   G   +   +G    +A  LAG+ 
Sbjct: 170 DWDNMVAKIDDLMPREHRDVIRQLAREIDRTLASFIRGQGTVCAIQGAYYAAALMLAGLQ 229

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTL 296
             + +G +  +++ IP    +    ++I L +    GN      + +  A+  F+    L
Sbjct: 230 FGLVVGFVAGLISFIPYIGALFGGVLAIGLALFQFWGNWLMIGIVVVIFAVGQFVEGNIL 289

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            P LVG  + L  +   F L       G +GL +   L A + VI + +I+  K
Sbjct: 290 TPKLVGESVGLHPVWLLFALSVFGLLFGFVGLLVAVPLAASLGVIIRFAIVQYK 343


>gi|229019819|ref|ZP_04176621.1| Sporulation integral membrane protein YtvI [Bacillus cereus AH1273]
 gi|229026045|ref|ZP_04182428.1| Sporulation integral membrane protein YtvI [Bacillus cereus AH1272]
 gi|228735261|gb|EEL85873.1| Sporulation integral membrane protein YtvI [Bacillus cereus AH1272]
 gi|228741490|gb|EEL91688.1| Sporulation integral membrane protein YtvI [Bacillus cereus AH1273]
          Length = 365

 Score = 95.3 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 57/351 (16%), Positives = 128/351 (36%), Gaps = 16/351 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I+R + + +  V+ +++  + + ++   II F    + +  ++   +   F   +A +  
Sbjct: 2   ILRLIFVIVATVAGFYVLLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVS 61

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + L    ++ L  Y + E     + ++       P     +          L+   +S  
Sbjct: 62  LILVFGAIVGLVTYLVTEAISATTYLLQIVTVKFPDIVAFAQQFALNHIMPLYDDLISKF 121

Query: 131 QSLKILSETFLKTNGIDF--------------IPRFASRFGMIFLDYCLSIIFMIIALFF 176
             L       +  N  +               I    + F          ++F+++A FF
Sbjct: 122 NHLGEPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFILLATFF 181

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
              D   ++ ++     +    Y K I   + K +         +     +++     + 
Sbjct: 182 ISYDWHHLAHKVRKFLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLIL 241

Query: 237 GVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
            VP  + + +IT ++ ++P  G    F    IY+   G+   A  L +   + + +  + 
Sbjct: 242 RVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVI-VQRQI 300

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           + P ++   I L  L T   L  G +  G LGL IGPV + L+  + K  +
Sbjct: 301 MEPKVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVTLVLLNTLHKAHV 351


>gi|77457862|ref|YP_347367.1| hypothetical protein Pfl01_1635 [Pseudomonas fluorescens Pf0-1]
 gi|77381865|gb|ABA73378.1| putative transmembrane protein [Pseudomonas fluorescens Pf0-1]
          Length = 357

 Score = 95.3 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/343 (13%), Positives = 124/343 (36%), Gaps = 14/343 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + ++   ++ L     P L AL++ +   P+      +   S T+  +        +   
Sbjct: 13  VLLLCAFVWLLHPILTPFLVALLLAYLFDPLVDRLE-RLGLSRTWGVITVFALFTLIVTA 71

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLK 134
            LL L      ++  L             +  WL    +P       L        +   
Sbjct: 72  LLLVLVPMLAKQLLRLYELA-------PQMLDWLQHTAVPWAQSKLGLSDGFWKFDKVKA 124

Query: 135 ILSETFLKT-NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            +SE   +T + +  +   A+   +  + +  +++ + +  F+  RD   +  ++  L  
Sbjct: 125 AISEHMGQTTDIVGVVLSQATASSLALIGWLANLVLIPVVSFYLLRDWDVMMARIRGLLP 184

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                    ++    +V+ +   G  ++ +  G++  +   + G+   + +G+I  + A+
Sbjct: 185 RDREERVVALAGECHEVLGAFVRGQLLVMLALGVIYAAGLMIVGLELGLLIGLIAGLAAI 244

Query: 254 IPGGAPISFTAVSIY---LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +P    +     ++        G+++    +     +   +    L P LVG  I L  +
Sbjct: 245 VPYMGFVIGIGAALIAGLFQFGGDLYPMIGIVAVFMVGQALEGMVLTPLLVGDRIGLHPV 304

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              F ++ G    G  G+ +   + A+I V+ +      K+++
Sbjct: 305 AVIFAILAGGELFGFTGVLLALPVAAVIMVLVRHVHDLYKDSE 347


>gi|71903383|ref|YP_280186.1| hypothetical protein M28_Spy0718 [Streptococcus pyogenes MGAS6180]
 gi|71802478|gb|AAX71831.1| hypothetical membrane spanning protein [Streptococcus pyogenes
           MGAS6180]
          Length = 393

 Score = 95.3 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 60/337 (17%), Positives = 124/337 (36%), Gaps = 7/337 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+ +  + F      P++ + I+ + + P+    I+    + T    I    +  LF+
Sbjct: 43  ISFLFMPVISFFAVIMLPLVISTILYYLTKPLVD-LINHLGPNRTTSIFIVFGLITLLFV 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +         ++   +  +             L +    +         L+H     +
Sbjct: 102 WAISGFVPMVQTQLTSFIEDLPKYVGKVNEEANKLLENEWLVSYKPQLQDMLTHTSQKAL 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   N ID+   FA     I     ++II     LF+F RD   +   L ++    
Sbjct: 162 DYAQSFSKNAIDWAGNFAGAIARIT----VAIIISPFILFYFLRDSSHMKNGLVNVLPLK 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   + K +     G   +AI  G +    + L G+   +  G+I   + MIP
Sbjct: 218 LRVPMVRVLGDINKQLSGYVQGQVTVAIVVGFMFSIMFSLVGLKYAITFGIIAGFLNMIP 277

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G+ ++   V I  +++G       L ++  IE  I  + + P ++G  + +  +   F
Sbjct: 278 YLGSFLAMIPVVIMAMVQGPFMLVKVLVIF-MIEQTIEGRFVAPLVLGNKLSIHPITIMF 336

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            L+      G+ G+F+   + A + V+ KE     K+
Sbjct: 337 LLLTAGSMFGVWGVFLVIPIYASVKVVIKELFDWYKK 373


>gi|309777687|ref|ZP_07672637.1| putative membrane protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914591|gb|EFP60381.1| putative membrane protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 395

 Score = 95.3 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/337 (13%), Positives = 108/337 (32%), Gaps = 4/337 (1%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE-ESSTFLAVIATVSVMCLFIVPL 78
           I + +  L+ F   ++ A +                        AV + + +  +    +
Sbjct: 41  ITMVIGMLRPFIYGIMMAFVFNIPMKFFLKKLPDSLGRWKKALAAVCSFLIIFGILAFII 100

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
             +    +  +  L + +    +      + ++ +       +   + +    +    + 
Sbjct: 101 RIVMPQVIDSIASLANSLPGYIE---DAQKTITAMIEKQQIPDEVLRQVDTYSAQLQDTL 157

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             L  NGI  +   AS F     +  ++++  +       +      + L +        
Sbjct: 158 VNLLKNGIPHLLTMASGFASSLANVFMALVIAVYLTVSKDKLLEQSHRFLYAFTSQRVNH 217

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              +++R+      +   G  + A+  G++      + G P    LGVI     +IP   
Sbjct: 218 NVLRVARLTNTTFSAFITGQLVEAVIIGVLCYIGCLVLGFPYAPILGVIIGCTNIIPIFG 277

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            I    +   L+   N        ++G          + P +VG  + L  L   F +  
Sbjct: 278 AIFGVVLCALLVAFVNPLQGVFFVIFGICLQQFESNLIYPRVVGTSVGLSGLWVLFAITV 337

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G    G  G+ +G    ++I  + +E +      K++
Sbjct: 338 GGGLFGFAGMLLGLPTFSVIYSLLREEMNRRVRMKQE 374


>gi|282876206|ref|ZP_06285073.1| putative membrane protein [Staphylococcus epidermidis SK135]
 gi|281295231|gb|EFA87758.1| putative membrane protein [Staphylococcus epidermidis SK135]
          Length = 368

 Score = 95.3 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/359 (15%), Positives = 132/359 (36%), Gaps = 18/359 (5%)

Query: 11  IMRWMIMFIILVSLYFLKGFF-------APVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           ++  +++FI     Y  + F        AP++ +L++ +   PI +     +        
Sbjct: 2   VLLGIVIFIFDKISYVFQPFIIVFNTIAAPIIVSLVLFYLFNPIVNMMERYRIPR----- 56

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
               + +  +++  +  +     L +  + S++    ++       ++     +  + + 
Sbjct: 57  ---LLGITIIYVAIIGIITLIVNLLIPIIGSQIESFIKNTPNYLHKITRSLDKLNNNTIL 113

Query: 124 TKHLSHPQSLKILSETFLKTNGIDF---IPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           + ++         ++  + +   D+        + F     +  + I      LFF  +D
Sbjct: 114 SGYMGQVNEWLESAQKKIPSMVSDYSDGFGSKLATFAEAVANIGIVIGTTPFVLFFMLKD 173

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G         +    F   +  +   +   + S   G  I++   GL+L   Y + G+  
Sbjct: 174 GHKFKDYTTKIMPPKFRKDFHDLLEKMSVQVGSYIQGQIIVSFCIGLLLFIGYSIIGLKY 233

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + L  I A+ +++P   P    + +I + I  +      L +   +  F     + P +
Sbjct: 234 ALVLASIAAVTSVVPYLGPTIAISPAIVIAIITSPLMLLKLAVVWTLVQFFEGHFISPNV 293

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +G  +K+  L   F L+     MG++G+ IG  L A++ V+     M  K    +   N
Sbjct: 294 MGKTLKIHPLTIIFILLCAGNLMGIVGVIIGIPLYAVLKVLVSHIFMLFKRRYNRYYGN 352


>gi|257080067|ref|ZP_05574428.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256988097|gb|EEU75399.1| conserved hypothetical protein [Enterococcus faecalis JH1]
          Length = 394

 Score = 95.3 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 56/334 (16%), Positives = 113/334 (33%), Gaps = 6/334 (1%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
                    PVL  +I+ +    +      K      +   I  V ++ L ++  L LF 
Sbjct: 45  FVIFSAVLGPVLFGIILFYLLNSMVKRLEKKIP--RVWAIAILYVLIIALLVLAGLQLFP 102

Query: 84  YGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
               + +EL+ +     +  +  V  +++  P                  L    + F  
Sbjct: 103 IIQDQTEELIKQFPSFWKSTLQTVQEFMAKTPFAKDLESANESINQLWGKLANSFKDFAG 162

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            + +    +             L++    I  FF  +D     + +  +    F   + +
Sbjct: 163 -DYLQTGAQGLGSVFSAVSSTFLTLFTGPIIAFFLLKDKEKFYRFVKGIIPPAFRPDFDE 221

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
            S+I    I     G  I ++  G++   A+ L G+     L +   I+ +IP  G  I+
Sbjct: 222 YSQIANIQIGDYLKGQVIASLVLGIMYWPAFLLIGLQFGSILALAAGILCIIPYIGPFIA 281

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F    I             + +W AI+L   D  + P ++G  +K+  +     L+    
Sbjct: 282 FIPGLIIAFQDSTFMVVKFVIVWFAIQLIHGDFVI-PRVMGDKLKVHPITILLVLLVMGE 340

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             GL+G+  G  +  L+ V         K+   +
Sbjct: 341 LFGLMGVIFGIPMYCLVKVTVIYLFRKFKQRYNR 374


>gi|15675014|ref|NP_269188.1| hypothetical protein SPy_1011 [Streptococcus pyogenes M1 GAS]
 gi|21910186|ref|NP_664454.1| hypothetical protein SpyM3_0650 [Streptococcus pyogenes MGAS315]
 gi|28896114|ref|NP_802464.1| hypothetical protein SPs1202 [Streptococcus pyogenes SSI-1]
 gi|71910551|ref|YP_282101.1| hypothetical protein M5005_Spy_0738 [Streptococcus pyogenes
           MGAS5005]
 gi|94988484|ref|YP_596585.1| hypothetical protein MGAS9429_Spy0853 [Streptococcus pyogenes
           MGAS9429]
 gi|94990364|ref|YP_598464.1| hypothetical protein MGAS10270_Spy0855 [Streptococcus pyogenes
           MGAS10270]
 gi|94992310|ref|YP_600409.1| hypothetical protein MGAS2096_Spy0813 [Streptococcus pyogenes
           MGAS2096]
 gi|139473855|ref|YP_001128571.1| hypothetical protein SpyM51019 [Streptococcus pyogenes str.
           Manfredo]
 gi|13622163|gb|AAK33909.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
 gi|21904379|gb|AAM79257.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
 gi|28811364|dbj|BAC64297.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
 gi|71853333|gb|AAZ51356.1| hypothetical membrane spanning protein [Streptococcus pyogenes
           MGAS5005]
 gi|94541992|gb|ABF32041.1| hypothetical membrane spanning protein [Streptococcus pyogenes
           MGAS9429]
 gi|94543872|gb|ABF33920.1| hypothetical membrane spanning protein [Streptococcus pyogenes
           MGAS10270]
 gi|94545818|gb|ABF35865.1| hypothetical membrane spanning protein [Streptococcus pyogenes
           MGAS2096]
 gi|134272102|emb|CAM30346.1| putative membrane protein [Streptococcus pyogenes str. Manfredo]
          Length = 393

 Score = 95.3 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 60/337 (17%), Positives = 124/337 (36%), Gaps = 7/337 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+ +  + F      P++ + I+ + + P+    I+    + T    I    +  LF+
Sbjct: 43  ISFLFMPVISFFAVIMLPLVISTILYYLTKPLVD-LINHLGPNRTTSIFIVFGLITLLFV 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +         ++   +  +             L +    +         L+H     +
Sbjct: 102 WAISGFVPMVQTQLTSFIEDLPKYVGKVNEEANKLLENEWLVSYKPQLQDMLTHTSQKAL 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   N ID+   FA     I     ++II     LF+F RD   +   L ++    
Sbjct: 162 DYAQSFSKNAIDWAGNFAGAIARIT----VAIIISPFILFYFLRDSSHMKNGLVNVLPLK 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   + K +     G   +AI  G +    + L G+   +  G+I   + MIP
Sbjct: 218 LRVPMVRVLGDINKQLSGYVQGQVTVAIVVGFMFSIMFSLVGLKYAITFGIIAGFLNMIP 277

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G+ ++   V I  +++G       L ++  IE  I  + + P ++G  + +  +   F
Sbjct: 278 YLGSFLAMIPVVIMAMVQGPFMLVKVLVIF-MIEQTIEGRFVAPLVLGNKLSIHPITIMF 336

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            L+      G+ G+F+   + A + V+ KE     K+
Sbjct: 337 LLLTAGSMFGVWGVFLVIPIYASVKVVIKELFDWYKK 373


>gi|290580177|ref|YP_003484569.1| hypothetical protein SmuNN2025_0651 [Streptococcus mutans NN2025]
 gi|254997076|dbj|BAH87677.1| putative membrane protein [Streptococcus mutans NN2025]
          Length = 389

 Score = 95.3 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 58/327 (17%), Positives = 119/327 (36%), Gaps = 9/327 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           FL     P++ + ++ +   PI      +         V+A   V  +    L++     
Sbjct: 52  FLAVIMLPLVISALLYYLLKPIVDFIERRGTSR-----VMAITIVFVIIAGLLVWGIANF 106

Query: 86  MLEMKE-LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
              + E L S +     +   V   +S +      +    +      +    +  + +T 
Sbjct: 107 FPMLNEQLTSFIKYLPSYVRSVDAQVSKLLRNDLLASFRPQIEDAVTNFSQKAVDYAETF 166

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               +  +A  F  +     ++II     +F+  RD   + +   S           +I 
Sbjct: 167 SKGAV-TWAGNFASLIARVTVAIIISPFIVFYLLRDSSKMQEAFVSYLPTKMRQPIHRIL 225

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
             V + +     G   +AI  G +    + + G+   V  G+I   + MIP  G+ ++  
Sbjct: 226 GDVNRQLAGYVQGQVTVAIIVGFMFSIMFTIIGLRYAVTFGIIAGFLNMIPYLGSFLATI 285

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
            V I  L++G       + L   +E  I  + + P ++G  + +  +   F L+      
Sbjct: 286 PVFILALVEG-PVMVVKVALVFIVEQTIEGRFVSPLVLGSKLSIHPITIMFILLTAGSMF 344

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIK 350
           G+ G+F+G  + A I V+ KE     K
Sbjct: 345 GVWGVFLGIPVYASIKVVVKEIFEWYK 371


>gi|229163588|ref|ZP_04291537.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           R309803]
 gi|228619838|gb|EEK76715.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           R309803]
          Length = 365

 Score = 94.9 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 57/347 (16%), Positives = 124/347 (35%), Gaps = 15/347 (4%)

Query: 14  WMIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
             ++   +V  Y L    G   P + A    +   P+ +    K +       +++ + V
Sbjct: 6   IFVIVATVVGFYALLYTSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLILV 65

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
               +  + +L    +     L+  V +     +   +  +         +L +K     
Sbjct: 66  FGAIVGLVTYLVTEAISATTYLLQIVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNHLG 125

Query: 131 QSLKILSETFLKTNGID----------FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +  +      ++  G +           I    + F          ++F+++A FF   D
Sbjct: 126 EPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFISYD 185

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              ++Q+   L  +    Y K I   + K +         +     +++     +  VP 
Sbjct: 186 WHRLAQKARKLLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRVPY 245

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            + + +IT ++ ++P  G    F    IY+   G+   A  L +   + + +  + + P 
Sbjct: 246 AITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVI-VQRQIMEPK 304

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           ++   I L  L T   L  G +  G LGL IGPV + L+  + K  +
Sbjct: 305 VLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVTLVLLNTLHKAHV 351


>gi|304407564|ref|ZP_07389216.1| protein of unknown function UPF0118 [Paenibacillus curdlanolyticus
           YK9]
 gi|304343515|gb|EFM09357.1| protein of unknown function UPF0118 [Paenibacillus curdlanolyticus
           YK9]
          Length = 356

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/330 (14%), Positives = 122/330 (36%), Gaps = 12/330 (3%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
             FL+   AP   A+II +   P+ S    +K           TV+V+ ++ V    L  
Sbjct: 37  YAFLRAVLAPFFIAMIISYVLNPVVSLLHVRKMPR--------TVAVLLIYTVFCGSLTV 88

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             M  +   + ++   N+H   +     ++   +  + L  + +    +  +     ++ 
Sbjct: 89  VLMNAVPMFMEQLQELNRHAPELTVRAQNLVENLNNNSLMPESIRSGINNSLYK---MEK 145

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
              + +  F +  G   ++    +  +    F+  +D     + + +           ++
Sbjct: 146 KLSESVFDFVNNIGA-MVNVVFILFIIPFLAFYILKDFEVFERTVITYVPKSHRQQTVRL 204

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
            + +   + S   G  I+ +  G++    YW+ G+P  + L  + AI  +IP   P    
Sbjct: 205 LKDIDAALGSYIRGQFIVCLIVGVLAYLGYWIIGMPYPLLLAAVVAITNVIPYLGPFIGA 264

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
           A ++ +    ++     + +   +   +    + P +VG  + +  L     L+ G    
Sbjct: 265 APALLMAATISVKMMILVVVVNTLCQILESNVVSPQVVGRTLHMHPLSIILALLVGGELA 324

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G++G+ +   + A + V+ +         K
Sbjct: 325 GIVGMILAVPIFAALKVVVQHMFAYYVRRK 354


>gi|325689380|gb|EGD31385.1| permease [Streptococcus sanguinis SK115]
          Length = 360

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 64/342 (18%), Positives = 123/342 (35%), Gaps = 17/342 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS---TFLAVIATVSVMCLFIV 76
           I   L  L   F+P++   ++ F             ++          +A +  + +  +
Sbjct: 27  IWSGLQSLTSVFSPIILGGVLAFIFNVPMKKLEDFLDKCRVPQKLQRGLALILEVLILAL 86

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            +  +    +  +   V+++        P V +WL     G+ +S          Q+   
Sbjct: 87  IMTGIVSIVVPTLTTAVNQLSATIGKVAPQVAKWLQQ--SGLLSSSQLKDLTKQLQNSD- 143

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                +    I  +         IF ++  S+I  I  +F F      +      L + +
Sbjct: 144 -----IVNRAISLLGSLTGNISAIFGNFF-SVIMSIFLMFAFLSSKEHLQTITSRLLQVM 197

Query: 196 FPAYWKKISRIVPKVIRST----FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
            P    K    V  VI  T     +G  I A+  G+++  AY L G+P     GV+  ++
Sbjct: 198 LPEKAVKRLSYVGSVIVETYDKFLMGQMIEAVIVGILVFIAYSLTGLPYAALTGVLAGVL 257

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           + IP   P S  A+    +   + + A            I    + P +VG  + LP L 
Sbjct: 258 SFIPYIGPFSACALGAIFIFTDSPWKALLSIAVFQGVQLIEGNVIYPRVVGQSVGLPTLF 317

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           T    + G    GL+G+     + A+I  + +E ++  +E K
Sbjct: 318 TLAAALIGGNLFGLVGMIFFTPIFAVIYRLVREFVVEKEEKK 359


>gi|269962255|ref|ZP_06176608.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833086|gb|EEZ87192.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 338

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 87/244 (35%), Gaps = 5/244 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I FI++V  +    F   +L AL++    +PI     +K + +S   A +  ++ + L 
Sbjct: 62  VIAFIVIVCCWAFLPFLPILLWALVLAIALYPIKQYLQAKTKWTSARTATLIALAGVLLL 121

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQSL 133
             P   +      +  +                  + D P  G    ++W +   +  S 
Sbjct: 122 GGPTAMVGNSFATKTFDAYEAYQEGTLVVSKPSETVQDWPVIGEELYDVWNEASENLPSF 181

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
               +  +KT    +I   AS           +II   I L +      SI +   S   
Sbjct: 182 VEKRQPQIKT-LFSWIGDKASGAAKSVFLLIGAIIIAGIMLAWSQPATHSIQKIFISFSG 240

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
               A   ++  +    IR   +G+  IA    +  G+   L+GVP+     +I  + A+
Sbjct: 241 K---ARGPELHALTTATIRQVAIGIIGIAFLTAMTFGATVALSGVPAAALFTLIALVFAI 297

Query: 254 IPGG 257
           +   
Sbjct: 298 VQLP 301


>gi|94994287|ref|YP_602385.1| hypothetical membrane spanning protein [Streptococcus pyogenes
           MGAS10750]
 gi|306827469|ref|ZP_07460753.1| membrane protein [Streptococcus pyogenes ATCC 10782]
 gi|94547795|gb|ABF37841.1| hypothetical membrane spanning protein [Streptococcus pyogenes
           MGAS10750]
 gi|304430349|gb|EFM33374.1| membrane protein [Streptococcus pyogenes ATCC 10782]
          Length = 393

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 60/337 (17%), Positives = 124/337 (36%), Gaps = 7/337 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+ +  + F      P++ + I+ + + P+    I+    + T    I    +  LF+
Sbjct: 43  ISFLFMPVISFFAVIMLPLVISTILYYLTKPLVD-LINHLGPNRTTSIFIVFGLITLLFV 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +         ++   +  +             L +    +         L+H     +
Sbjct: 102 WAISGFVPMVQTQLTSFIEDLPKYVGKVNEEANKLLENEWLVSYKPQLQDMLTHTSQKAL 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   N ID+   FA     I     ++II     LF+F RD   +   L ++    
Sbjct: 162 DYAQSFSKNAIDWAGNFAGAIARIT----VAIIISPFILFYFLRDSSHMKNGLVNVLPLK 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   + K +     G   +AI  G +    + L G+   +  G+I   + MIP
Sbjct: 218 LRVPMVRVLGDINKQLSGYVQGQVTVAIVVGFMFSIMFSLVGLKYAITFGIIAGFLNMIP 277

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G+ ++   V I  +++G       L ++  IE  I  + + P ++G  + +  +   F
Sbjct: 278 YLGSFLAMIPVVIMAMVQGPFMLVKVLVIF-MIEQTIEGRFVAPLVLGNKLSIHPITIMF 336

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            L+      G+ G+F+   + A + V+ KE     K+
Sbjct: 337 LLLTAGSMFGVWGVFLVIPIYASVKVVIKELFDWYKK 373


>gi|218290422|ref|ZP_03494552.1| sporulation integral membrane protein YtvI [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239550|gb|EED06744.1| sporulation integral membrane protein YtvI [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 375

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 116/328 (35%), Gaps = 5/328 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    +   +++L  L  +  P +   +      P+      +     T + ++  V
Sbjct: 19  EIVILLAFIAAFILALACLMQYILPFVIGWVFAILLIPVVRWLERRGMARLTSVLLVLGV 78

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           SV+C+  +    +    + E    VS   +  +  +       +I             +S
Sbjct: 79  SVLCIVAI-SAGIIIGALREATSFVSHSQVFFRVQLAQIE--GEIESSESLYGQLPPQVS 135

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +     +          +  I            D     +  ++  FF  +    +  + 
Sbjct: 136 NAVQSALTQFAHGLEGSVHKIITGLIGIVTHLPDTLFIAVISVVTAFFILQRRERMLARF 195

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +    +      +   + +    T     I+      +     ++ G P  + LG++ 
Sbjct: 196 YRMMPPGWAPKLNAVFEDMERAFLGTIRVQFILMCLSMFLGMIGMFVLGFPYAILLGILF 255

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +  ++P  G+ I     +I  LI G++  A  +     + + I+  T+ P ++   + L
Sbjct: 256 GLAGLVPIVGSAILTVPWAIVALITGHVAVAIKVLAL-QVVISIIRHTVEPKILADSVGL 314

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             L T FGL  G + MG +GLFIGP+L+
Sbjct: 315 DTLTTLFGLYVGFKVMGFIGLFIGPILL 342


>gi|315646978|ref|ZP_07900092.1| hypothetical protein PVOR_16529 [Paenibacillus vortex V453]
 gi|315277630|gb|EFU40955.1| hypothetical protein PVOR_16529 [Paenibacillus vortex V453]
          Length = 383

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/337 (15%), Positives = 125/337 (37%), Gaps = 5/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F++      +K    P++ + I+ +   P+    + K+     +  +I  +++  +  
Sbjct: 40  ISFVLHPLAVLIKTIVLPIILSGILYYLLNPLVD-IMEKRNIKRGWSILILYLAIAGILT 98

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +L +      ++  L+      +++   V     ++ G    S+L      + Q    
Sbjct: 99  VVVLAVIPVLRNQITGLIDNFPRYSEN---VRLQFEELTGSQLFSQLQDAVSINSQDWWN 155

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                          R     G    +  LSI+ +   LF+  +DG  + Q++ S     
Sbjct: 156 TLTQKATEIFNHTWARVGGFLGAFT-EIVLSIVTVPFVLFYMLKDGKKLPQKILSFLPTK 214

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
             +    + + +   I S   G  I++   G++L   Y + G+   + L +I +  +++P
Sbjct: 215 SRSGIFHVLQDINHQISSFIRGQIIVSFCIGILLYIGYMIIGLDYALILAIIASFTSIVP 274

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P      ++ + +  +      +     I   I  K + P ++G  +K+  +   F 
Sbjct: 275 YLGPAIAITPALIVALVTSPVMLLKMVAVWTIVQLIEGKFISPQIMGKTLKIHPITIIFV 334

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           ++      G++G+ +     A++ V         K+ 
Sbjct: 335 ILTSGNLFGVVGILLAVPGYAVLKVCATHIFKWFKDT 371


>gi|254827854|ref|ZP_05232541.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|284801239|ref|YP_003413104.1| hypothetical protein LM5578_0989 [Listeria monocytogenes 08-5578]
 gi|284994381|ref|YP_003416149.1| hypothetical protein LM5923_0943 [Listeria monocytogenes 08-5923]
 gi|258600235|gb|EEW13560.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|284056801|gb|ADB67742.1| hypothetical protein LM5578_0989 [Listeria monocytogenes 08-5578]
 gi|284059848|gb|ADB70787.1| hypothetical protein LM5923_0943 [Listeria monocytogenes 08-5923]
          Length = 378

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 121/340 (35%), Gaps = 14/340 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           + +    I+F++L   Y            F P+L A  + +   P+      +K      
Sbjct: 17  EILAVVAILFVLLQMKYIFSPIGIIVSTLFMPILVAGFLFYLFNPLVLFLEKRKVPR-LL 75

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++  ++ + L ++ ++ L      ++ EL   +    Q      +WL  +      S 
Sbjct: 76  SVIVIFIAFITLVVLAVMQLGPTLADQVAELAKAIPGYWQ---DFEKWLQGL---SNNSA 129

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L    +        +S   + +  +D +             + + ++ +   +F+ ++DG
Sbjct: 130 LKDIDMKQELEKLNISLPKIMSVVVDGVASSFGAIVSFVSSFVMILVTVPFIVFYMFKDG 189

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               +           +  K+I + + K I +      I  +  GL     Y + G P  
Sbjct: 190 HKFVESSGKFFPAGIRSEAKQIIKEMNKTISTYISSQAIDCMFVGLFTFIGYLIIGQPYA 249

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +  G I     +IP   P    A ++ + +  +   A  + +   I   I    L P+++
Sbjct: 250 LLFGFIAGATNIIPYLGPFIGAAPAVIVALFTSPVQALLVIVVVTIVQQIDSNLLSPYIM 309

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           G  + +  L     L+      G+ G+ +G  L A++  I
Sbjct: 310 GKSLSIHPLTIIIILIVAGNLAGIFGMILGVPLYAVVKTI 349


>gi|254832124|ref|ZP_05236779.1| hypothetical protein Lmon1_12289 [Listeria monocytogenes 10403S]
          Length = 378

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 121/340 (35%), Gaps = 14/340 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           + +    I+F++L   Y            F P+L A  + +   P+      +K      
Sbjct: 17  EILAVVAILFVLLQMKYIFSPIGIIVSTLFMPILVAGFLFYLFNPLVLFLEKRKVPR-LL 75

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++  ++ + L ++ ++ L      ++ EL   +    Q      +WL  +      S 
Sbjct: 76  SVIVIFIAFITLVVLAVMQLGPTLADQVAELAKAIPGYWQ---DFEKWLQGL---SNNSA 129

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L    +        +S   + +  +D +             + + ++ +   +F+ ++DG
Sbjct: 130 LKDIDMKQELEKLNISLPKIMSVVVDGVASSFGAIVSFVSSFVMILVTVPFIVFYMFKDG 189

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               +           +  K+I + + K I +      I  +  GL     Y + G P  
Sbjct: 190 HKFVESSGKFFPAGIRSEAKQIIKEMNKTISTYISSQAIDCMFVGLFTFIGYLIIGQPYA 249

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +  G I     +IP   P    A ++ + +  +   A  + +   I   I    L P+++
Sbjct: 250 LLFGFIAGATNIIPYLGPFIGAAPAVIVALFTSPVQALLVIVVVTIVQQIDSNLLSPYIM 309

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           G  + +  L     L+      G+ G+ +G  L A++  I
Sbjct: 310 GKSLSIHPLTIIIILIVAGNLAGIFGMILGVPLYAVVKTI 349


>gi|322382966|ref|ZP_08056798.1| permease-like protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321153086|gb|EFX45544.1| permease-like protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 365

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/319 (16%), Positives = 119/319 (37%), Gaps = 12/319 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           FLK   AP + A+II +   P+ +    +K   +        V+V+ +++V    L+   
Sbjct: 48  FLKAVLAPFIIAVIISYILNPVVNLLNGRKVPRA--------VAVLMIYLVFFTSLWVVI 99

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           M      V ++   N+H   +      +  G+    L    +       +     L+   
Sbjct: 100 MNVTPVFVKQLGELNEHMPQLTMRAESLMQGLSDHPLLPPSVRAGIQDALFK---LQHII 156

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + I +     G       ++ I      F+  +D   + + + ++       +  K+  
Sbjct: 157 SERITKSVESIGSTINMLFIAFII-PFLAFYMLKDFQLMEKAVLAIVPRSHRKHIIKVLV 215

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   + +   G  ++    G++    YW+ G+P  + L  + AI  +IP   P    A 
Sbjct: 216 DIDTALGNYIRGQLLVCFIIGILAYIGYWVIGMPYALLLATVVAIFNIIPYLGPFFGAAP 275

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ +    +      + +   I   +    + P +VG  + +  L   F L+ G    G+
Sbjct: 276 ALVVAATVSFKMVLLVAVINLIVQILEGNFISPQVVGRTLHMHPLLIIFALLVGGEAAGI 335

Query: 326 LGLFIGPVLMALIAVIWKE 344
           +GL +   + A+  VI + 
Sbjct: 336 VGLILAVPVFAVFKVILQH 354


>gi|16802949|ref|NP_464434.1| hypothetical protein lmo0908 [Listeria monocytogenes EGD-e]
 gi|224499448|ref|ZP_03667797.1| hypothetical protein LmonF1_06997 [Listeria monocytogenes Finland
           1988]
 gi|224503122|ref|ZP_03671429.1| hypothetical protein LmonFR_11478 [Listeria monocytogenes FSL
           R2-561]
 gi|16410311|emb|CAC98986.1| lmo0908 [Listeria monocytogenes EGD-e]
          Length = 378

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 121/340 (35%), Gaps = 14/340 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           + +    I+F++L   Y            F P+L A  + +   P+      +K      
Sbjct: 17  EILAVVAILFVLLQMKYIFSPIGIIVSTLFMPILVAGFLFYLFNPLVLFLEKRKVPR-LL 75

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++  ++ + L ++ ++ L      ++ EL   +    Q      +WL  +      S 
Sbjct: 76  SVIVIFIAFITLVVLAVMQLGPTLADQVAELAKAIPGYWQ---DFEKWLQGL---SNNSA 129

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L    +        +S   + +  +D +             + + ++ +   +F+ ++DG
Sbjct: 130 LKDIDMKQELEKLNISLPKIMSVVVDGVASSFGAIVSFVSSFVMILVTVPFIVFYMFKDG 189

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               +           +  K+I + + K I +      I  +  GL     Y + G P  
Sbjct: 190 HKFVESSGKFFPAGIRSEAKQIIKEMNKTISTYISSQAIDCMFVGLFTFIGYLIIGQPYA 249

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +  G I     +IP   P    A ++ + +  +   A  + +   I   I    L P+++
Sbjct: 250 LLFGFIAGATNIIPYLGPFIGAAPAVIVALFTSPVQALLVIVVVTIVQQIDSNLLSPYIM 309

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           G  + +  L     L+      G+ G+ +G  L A++  I
Sbjct: 310 GKSLSIHPLTIIIILIVAGNLAGIFGMILGVPLYAVVKTI 349


>gi|84686212|ref|ZP_01014107.1| Lipocalin-related protein and Bos/Can/Equ allergen [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84665739|gb|EAQ12214.1| Lipocalin-related protein and Bos/Can/Equ allergen [Rhodobacterales
           bacterium HTCC2654]
          Length = 362

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/343 (14%), Positives = 115/343 (33%), Gaps = 14/343 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +   +  V L+FL     P L    I +   P+     +       +  +  ++  + +
Sbjct: 13  AIAAVVFFVLLWFLGDVIMPFLIGGAIAYFLDPVADKLEAW-GFKRIWATITISILALIV 71

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           F++ +L +    + +  +L++      Q+       +   P  +    +  + L      
Sbjct: 72  FVILILLIVPSLVNQAGQLINLAPQIAQNLRDFL--IERFPDVVDQDSVLRQSLDQIGKT 129

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                  L                M  ++  L  + + +  F+   D   +   +D L  
Sbjct: 130 IQDRGAEL--------VDAVLSSAMGIVNIALLFVIVPVVTFYLLWDWDRMVAAIDDLLP 181

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  + ++  + + +     G   + +  G     A  LAG+   + +G +   +  
Sbjct: 182 RDHAPVIRDLASQIDRTLAGFIRGQGTVCLILGTFYAVALMLAGLQFGLIVGAVAGALTF 241

Query: 254 IPGGAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           IP    +   A++I L +    G  ++   +     +  F     L P LVG  + L  +
Sbjct: 242 IPYIGALVGGALAIGLALFQFWGEWWHIAIVAGIFMVGQFFEGNILTPNLVGTSVGLHPV 301

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              F L       G +G+ +   + A + V+ +  I   KE +
Sbjct: 302 WLIFALSAFGTVFGFVGMLVAVPVAAALGVVTRYLIQRYKEGR 344


>gi|223932565|ref|ZP_03624566.1| protein of unknown function UPF0118 [Streptococcus suis 89/1591]
 gi|302024193|ref|ZP_07249404.1| membrane protein [Streptococcus suis 05HAS68]
 gi|330833141|ref|YP_004401966.1| hypothetical protein SSUST3_1355 [Streptococcus suis ST3]
 gi|223898836|gb|EEF65196.1| protein of unknown function UPF0118 [Streptococcus suis 89/1591]
 gi|329307364|gb|AEB81780.1| protein of unknown function UPF0118 [Streptococcus suis ST3]
          Length = 388

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 56/329 (17%), Positives = 123/329 (37%), Gaps = 13/329 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           FL+    P++   ++ +   P+       K           TV +  LF++  L + +  
Sbjct: 52  FLEIVLLPMILTGLLYYLLNPMVDWMEKHKISR--------TVGISILFVLISLLIIWGL 103

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            + +  +  +V    Q+     + +     G+   + + +       +       +    
Sbjct: 104 AVAIPSIQEQVTSFAQNLPSNIQKIEGQVTGLLQDQRFEQFRPTALEMLNKVNDQIVAYA 163

Query: 146 IDF---IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
             F      +AS          ++I+ M   LF+  RDG  +++ +       +      
Sbjct: 164 QKFSSSAVNWASNLISTASQIIVAILIMPFILFYLLRDGQYLNKHITQYLPTKWREPIGT 223

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
           +   V   + +   G   +AI   L+    + + G+   + LGV+   + +IP  G+ ++
Sbjct: 224 VLSDVNGQLSNYVRGQVTVAIIVALMFSVMFSIIGLSYPITLGVMAGFLNLIPYLGSFLA 283

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
                I  LI G I     + +   IE  I  + + P ++G  + +  +   F L+   +
Sbjct: 284 MIPAVILGLIAGPIML-IKVLVVFMIEQTIEGRFVTPLIIGSSLSIHPITILFVLLTAGQ 342

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             G+LG+ +G  + A I V+ K +    K
Sbjct: 343 MYGVLGVLLGIPIYASIKVLVKAAFEWYK 371


>gi|292558783|gb|ADE31784.1| Predicted permease [Streptococcus suis GZ1]
          Length = 391

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/329 (16%), Positives = 122/329 (37%), Gaps = 13/329 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           FL+    P++   ++ +   P+       K           TV +  LF++  L + +  
Sbjct: 55  FLEIVLLPMILTGLLYYLLNPMVDWMEKHKISR--------TVGISILFVLISLLIIWGL 106

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            + +  +  +V    Q+     + +     G+   + + +       +       +    
Sbjct: 107 AVAIPSIQEQVTSFAQNLPSNIQKIEGQVTGLLQDQRFEQFRPTALEMLNKVNDQIVAYA 166

Query: 146 IDF---IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
             F      +AS          ++I+ M   LF+  RDG  +++ +       +      
Sbjct: 167 QKFSSSAVNWASNLISTASQIIVAILIMPFILFYLLRDGQYLNKHITQYLPTKWREPIGT 226

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
           +   V   + +   G   +AI   L+    + + G+   + LGV+   + +IP  G+ ++
Sbjct: 227 VLSDVNGQLSNYVRGQVTVAIIVALMFSVMFSIIGLSYPITLGVMAGFLNLIPYLGSFLA 286

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
                I  LI G I     + +   IE  I  + + P ++G  + +  +   F L+   +
Sbjct: 287 MIPAVILGLIAGPIML-IKVLVVFMIEQTIEGRFVTPLIIGSSLSIHPITILFVLLTAGQ 345

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             G+ G+ +G  + A I V+ K +    K
Sbjct: 346 MYGVPGVLLGIPIYASIKVLVKAAFEWYK 374


>gi|237752007|ref|ZP_04582487.1| membrane protein [Helicobacter winghamensis ATCC BAA-430]
 gi|229376574|gb|EEO26665.1| membrane protein [Helicobacter winghamensis ATCC BAA-430]
          Length = 355

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 134/361 (37%), Gaps = 18/361 (4%)

Query: 6   LNPQGIMRWMIMFII--LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           +   GI  ++I F++  L        F   +L A ++   +  IY + + + + S   ++
Sbjct: 1   MRNSGIYFFLIAFVLTLLALFRLYAPFLMNLLIAFLLFIATQGIYCALLKRLK-SQLLVS 59

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +  + ++ L  VP+ ++          L   +       +     L+ +        L 
Sbjct: 60  ALMVLILITLCFVPIFYILLSLANIATNL--DLGNFQNFLLDTQARLT-LFSKDLILYLP 116

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
               +   +           + +       ++     + +    +F+++ LFFFY  G +
Sbjct: 117 DIIQNEMNTYLEQFHAINWGDILKQGLNLIAKASKNSISFVSDTLFILVFLFFFYYYGNT 176

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +      L     P   K +   V  VI   F       I +G + G      G  +   
Sbjct: 177 LGSYFLGLIP-FNPTQTKSLYNEVSAVISVVFYSSIFSMILQGTLFGILMLFFGY-NSYL 234

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRP--- 298
           L V     +++P  G  + +  +  Y L  GN  NA  + L+  I +  + D  ++P   
Sbjct: 235 LAVFYGFASLVPVVGGSLVWLPIVGYELYLGNYTNAIVIALYSIIIIATLADNGIKPFII 294

Query: 299 -----FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                 L+  P+++  +  FF ++ G+ + G  G+ +GP + AL   + +     +  NK
Sbjct: 295 AFINRVLIKTPVQINEMLIFFAIIAGLTSFGFWGIVLGPAITALFIALLRIYQTLLNSNK 354

Query: 354 E 354
           +
Sbjct: 355 D 355


>gi|219669593|ref|YP_002460028.1| hypothetical protein Dhaf_3575 [Desulfitobacterium hafniense DCB-2]
 gi|219539853|gb|ACL21592.1| protein of unknown function UPF0118 [Desulfitobacterium hafniense
           DCB-2]
          Length = 344

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/327 (16%), Positives = 119/327 (36%), Gaps = 9/327 (2%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           ++   +P + A ++ +   P+  + + +             +S+  +F+  LL L     
Sbjct: 25  VRPILSPFMLAFVLAYLLAPVVEALVRRGVGRK--------ISIALVFVGILLSLALLIF 76

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
           + + +L  ++   +Q      R L  +     A+   T       S+     +  ++  I
Sbjct: 77  IVIPKLYIELSKLSQVLPETVRTLELVIQDFRANFRATGLPHQVVSVLDEHLSEGESFLI 136

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
            ++  F            L  I   +   +   D   +      L        W+++ + 
Sbjct: 137 HWLEEFLDNLPKALTSMSL-FILSPVIAIYLLADWQRLQAGFLRLVPQRKRVAWQRVVQD 195

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           +  ++RS   G  I+A+  G++ G    L G+   + +GVI  +  +IP   P+     S
Sbjct: 196 ISHIVRSFIRGNVIVALIVGILTGVGVKLVGMDYALLIGVICGVFDLIPYFGPLIGAVPS 255

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           + L +  +   A  + +   I   +    + P L+G  + L  L   F L+ G    G  
Sbjct: 256 VLLGLIQSPMMALKVAIVILIVQQLESSIISPKLMGDSVGLHPLWIIFALLAGGEIAGFW 315

Query: 327 GLFIGPVLMALIAVIWKESIMAIKENK 353
           G+       A++ VI +     +   +
Sbjct: 316 GMLFAVPFAAVLRVIIRHIYFWLVSPE 342


>gi|253752195|ref|YP_003025336.1| hypothetical protein SSUSC84_1344 [Streptococcus suis SC84]
 gi|253754021|ref|YP_003027162.1| membrane protein [Streptococcus suis P1/7]
 gi|253755955|ref|YP_003029095.1| membrane protein [Streptococcus suis BM407]
 gi|251816484|emb|CAZ52120.1| putative membrane protein [Streptococcus suis SC84]
 gi|251818419|emb|CAZ56248.1| putative membrane protein [Streptococcus suis BM407]
 gi|251820267|emb|CAR46734.1| putative membrane protein [Streptococcus suis P1/7]
 gi|319758582|gb|ADV70524.1| hypothetical protein SSUJS14_1464 [Streptococcus suis JS14]
          Length = 388

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 56/329 (17%), Positives = 123/329 (37%), Gaps = 13/329 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           FL+    P++   ++ +   P+       K           TV +  LF++  L + +  
Sbjct: 52  FLEIVLLPMILTGLLYYLLNPMVDWMEKHKISR--------TVGISILFVLISLLIIWGL 103

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            + +  +  +V    Q+     + +     G+   + + +       +       +    
Sbjct: 104 AVAIPSIQEQVTSFAQNLPSNIQKIEGQVTGLLQDQRFEQFRPTALEMLNKVNDQIVAYA 163

Query: 146 IDF---IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
             F      +AS          ++I+ M   LF+  RDG  +++ +       +      
Sbjct: 164 QKFSSSAVNWASNLISTASQIIVAILIMPFILFYLLRDGQYLNKHITQYLPTKWREPIGT 223

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
           +   V   + +   G   +AI   L+    + + G+   + LGV+   + +IP  G+ ++
Sbjct: 224 VLSDVNGQLSNYVRGQVTVAIIVALMFSVMFSIIGLSYPITLGVMAGFLNLIPYLGSFLA 283

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
                I  LI G I     + +   IE  I  + + P ++G  + +  +   F L+   +
Sbjct: 284 MIPAVILGLIAGPIML-IKVLVVFMIEQTIEGRFVTPLIIGSSLSIHPITILFVLLTAGQ 342

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             G+LG+ +G  + A I V+ K +    K
Sbjct: 343 MYGVLGVLLGIPIYASIKVLVKAAFEWYK 371


>gi|313901320|ref|ZP_07834807.1| putative membrane protein [Clostridium sp. HGF2]
 gi|312953928|gb|EFR35609.1| putative membrane protein [Clostridium sp. HGF2]
          Length = 394

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/333 (13%), Positives = 110/333 (33%), Gaps = 2/333 (0%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L+ F   ++ A +                      LA + ++ ++   +  ++ +    
Sbjct: 47  MLRPFIYGIMMAFVFNIPMKFFLKKLPDNLGRWKKALAAVCSLLIIFGILAFIVRIVMPQ 106

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           ++E    ++  +          + ++ +       +   K +    +    +   L  NG
Sbjct: 107 VIESIASLANSLPGYIE--DAQKTITSMIEKQQIPQDVLKQVDTYSAQLQDTLVNLLKNG 164

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           I  +   AS F     +  ++++  +       +      + L +       A+  +++ 
Sbjct: 165 IPHLLTMASGFASSLANVFMALVIAVYLTVSKDKLLEQSHRFLYAFTSSRANAFVLRVAH 224

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
           +      +   G  + A+  G++      + G P    LGVI     +IP    I    +
Sbjct: 225 LTNTTFSAFITGQLVEAVIIGVLCYIGCLVLGFPYAPILGVIIGCTNIIPIFGAIFGVVL 284

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
              L+   N        ++G          + P +VG  + L  L   F +  G    G 
Sbjct: 285 CALLVAFVNPLQGVFFVIFGICLQQFESNLIYPRVVGTSVGLSGLWVLFAITVGGGLFGF 344

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            G+ +G    ++I  + +E +      K + SS
Sbjct: 345 AGMLLGLPTFSVIYSLLREEMNRRVRLKRENSS 377


>gi|322385122|ref|ZP_08058769.1| membrane protein [Streptococcus cristatus ATCC 51100]
 gi|321270746|gb|EFX53659.1| membrane protein [Streptococcus cristatus ATCC 51100]
          Length = 410

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/339 (14%), Positives = 120/339 (35%), Gaps = 11/339 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI    + F+     PV+ A ++ +   PI      +K              +  +F+
Sbjct: 63  ISFIFTPVIEFIGVIMLPVILAGLLYYLLNPIVDWMEKRKINR--------VAGITIVFV 114

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +  + + +   + +  L  +VV  +++     +  + +   +  + +        + +  
Sbjct: 115 LIGVLIVWGLAVAIPNLQHQVVSFSKNVPAYLKQANKMIDDVLTNHISDDLKPQIEQVTN 174

Query: 136 LSETFLKTNGIDF---IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
              T + +   +F      +AS          ++II M   LF+  RDG ++   +    
Sbjct: 175 KLSTQITSWASNFSSKAVNWASNLISTASQIIVAIIIMPFILFYLLRDGKNLKGYVVQFL 234

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
              F   + ++   V   + +   G   +AI    +    + + G+   V L V+  ++ 
Sbjct: 235 PTKFRESFGQVMTDVNTQLANYVRGQVTVAIIVAFMFMILFKIIGLRYGVTLAVVAGVLN 294

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++P          ++ L +         + +   +E  I  + + P ++G  + +  +  
Sbjct: 295 LVPYLGSFLAMLPALVLGLIAGPIMLLKVIIVFIVEQTIEGRFVSPLILGSQLSIHPITI 354

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            F L+      G+ G+ +G    A   V         K+
Sbjct: 355 LFVLLTSGTMFGIWGVLLGIPAYASAKVAITALFKWYKK 393


>gi|116871971|ref|YP_848752.1| hypothetical protein lwe0551 [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116740849|emb|CAK19969.1| putative membrane protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 389

 Score = 94.9 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 137/364 (37%), Gaps = 19/364 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFL--------------KGFFAPVLSALIIGFTSWPI 47
           ++  +  + ++  +I  ++ + +Y L              K   AP++ A I  +   PI
Sbjct: 9   KQFFIENKFVLGLLIFLLVALDIYVLTKISFIFDPLMVILKTVAAPIILAGISYYLFNPI 68

Query: 48  YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
                 KK +   +   +  + ++ L I+   F+      ++  L             + 
Sbjct: 69  IDWLEKKKWKR-GWAIALLYIVIIGLIILLFSFVIPAVKDQIVSLFKSFPGYWD---QIT 124

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
           +  ++        +L  K  ++   +     T   +     I    +  G +  +  L+I
Sbjct: 125 QRFNEFSRSSLFDQLKDKLSTNMSDIMKTISTKGTSVVNSAISSIGNIVGTVT-EVVLAI 183

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           +   + LF+  +DG  +   L  +      A+ +++       I S   G  I+++  G+
Sbjct: 184 VTTPLVLFYLLKDGKKLPDFLLKMLPVNGRAHTRQVLGEANHQISSYIRGQIIVSLCIGI 243

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
           +L   Y + G+P  + L +I A  +++P   P      +I + I  + +    L +   +
Sbjct: 244 LLFIGYLIIGLPYALTLAIIAACTSIVPYLGPAIAITPAIIIAIVTSPWLLIKLIIVWCV 303

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              +  K + P ++G  +K+  +   F ++      G+LG+       A++ VI     +
Sbjct: 304 VQLLEGKFISPQVMGKTLKVHPITILFVILVAGNLFGVLGVIFAVPGYAVLKVIVTHVFI 363

Query: 348 AIKE 351
             K 
Sbjct: 364 WFKR 367


>gi|310643516|ref|YP_003948274.1| protein [Paenibacillus polymyxa SC2]
 gi|309248466|gb|ADO58033.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
          Length = 355

 Score = 94.5 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/351 (15%), Positives = 125/351 (35%), Gaps = 24/351 (6%)

Query: 14  WMIMFIILVSLYFLKG-----------FFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
            ++  +IL  ++ L+              AP   A+II +   P+ S    +K   S   
Sbjct: 16  TLLGLVILYFIWLLRPLFLHLYEFLKTIIAPFAVAMIISYVLNPVVSMLGGRKVPRS--- 72

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                V+V+ ++ V L  L    M  +   + ++   N+H   +      +   M +  L
Sbjct: 73  -----VAVLLIYAVFLASLIVILMNLIPMFIEQLDELNEHLPELTMHAQGLMTNMDSGIL 127

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                +         E  + T    F+            +   ++  +   +F+  +D  
Sbjct: 128 PQGVRTGMNQWFFQLENRMATGISTFMDNIGGMI-----NMLFNVFIVPFLIFYILKDFD 182

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              + + S            + + + + + +   G  ++ +  G++    Y L G+P  +
Sbjct: 183 VFERTIVSYLPRSRRKAIVSVLKEIDQALGNYVRGQLLVCVIIGVMAYIGYMLIGMPYAL 242

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L  + A+  ++P   P    A ++ +    ++     + +  A    +    + P +VG
Sbjct: 243 LLAGVVALFNIVPYLGPFLGAAPAVIMASTVSLKMVLLVVVVNACIQVLESNVISPQVVG 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             + L  L   F L+ G    G+ GL +   +MA++ V  +       + K
Sbjct: 303 RTLHLHPLAIIFALLVGGEIAGIAGLILAVPVMAVLKVGLQHFFAYYVKRK 353


>gi|163759172|ref|ZP_02166258.1| permease [Hoeflea phototrophica DFL-43]
 gi|162283576|gb|EDQ33861.1| permease [Hoeflea phototrophica DFL-43]
          Length = 386

 Score = 94.5 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/346 (14%), Positives = 121/346 (34%), Gaps = 10/346 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           + +  L  Q     + + + +  L   +    P ++ + + +   P+   F  +   S  
Sbjct: 5   IDQRALRRQIFFWLLALGLFIAFLMVFRSILLPFIAGMALAYFLDPVADWFERR-GLSRL 63

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++   + + LF + L+ +    + +  +L  ++         +    + I    ++ 
Sbjct: 64  MATIVILCAFVALFAISLVVIIPVLVTQAADLGGRIPGYITQLQELLSSETTIMPAWFSD 123

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +L     S    LK           I  I +     GM  LD     +   +  F+   D
Sbjct: 124 QLSQVKESFAALLKE------GAGLIGTIFQQIWNSGMALLDIAALFVVTPVVAFYLLLD 177

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              + +++D           + ++R + + I     G   + +  GL+      + G+  
Sbjct: 178 WDRMIERVDGWIPRDHVETVRDLARQINQAIAGFVRGQGSVCLILGLIYAVGLSIVGLNF 237

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL---FIVDKTLR 297
            + +G+   I++ IP    +    +++ + I     +   +     + +   F     L+
Sbjct: 238 GLLIGLFAGIISFIPYVGSMVGLVLALVVAIVQFWPDFIMIGAVIGVFVVGQFFEGNILQ 297

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           P LVG  + L  +   F L       G +G+ I     A + V+ +
Sbjct: 298 PRLVGSSVGLHPVWLMFALFAFGALFGFVGMLIAVPAAASVGVLVR 343


>gi|47094916|ref|ZP_00232530.1| membrane protein, putative [Listeria monocytogenes str. 1/2a F6854]
 gi|254898918|ref|ZP_05258842.1| hypothetical protein LmonJ_03855 [Listeria monocytogenes J0161]
 gi|254911594|ref|ZP_05261606.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254935920|ref|ZP_05267617.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|47016798|gb|EAL07717.1| membrane protein, putative [Listeria monocytogenes str. 1/2a F6854]
 gi|258608508|gb|EEW21116.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|293589541|gb|EFF97875.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 378

 Score = 94.5 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 121/340 (35%), Gaps = 14/340 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           + +    I+F++L   Y            F P+L A  + +   P+      +K      
Sbjct: 17  EILAVVAILFVLLQMKYIFSPIGIIVSTLFMPILVAGFLFYLFNPLVLFLEKRKVPR-LL 75

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++  ++ + L ++ ++ L      ++ EL   +    Q      +WL  +      S 
Sbjct: 76  SVIVIFIAFITLVVLAVMQLGPTLADQVAELAKAIPGYWQ---DFEKWLQGL---SNNSA 129

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L    +        +S   + +  +D +             + + ++ +   +F+ ++DG
Sbjct: 130 LKDIDMKQELEKLNISLPKIMSVVVDGVASSFGAIVSFVSSFVMILVTVPFIVFYMFKDG 189

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               +           +  K+I + + K I +      I  +  GL     Y + G P  
Sbjct: 190 HKFVESSGKFFPAGIRSEAKQIIKEMNKTISTYISSQAIDCMFVGLFTFIGYLIIGQPYA 249

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +  G I     +IP   P    A ++ + +  +   A  + +   I   I    L P+++
Sbjct: 250 LLFGFIAGATNIIPYLGPFIGAAPAVIVALFTSPVQALLVIVVVTIVQQIDSNLLSPYIM 309

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           G  + +  L     L+      G+ G+ +G  L A++  I
Sbjct: 310 GKSLSIHPLTIIIILIVAGNLAGIFGMILGVPLYAVVKTI 349


>gi|159035990|ref|YP_001535243.1| hypothetical protein Sare_0322 [Salinispora arenicola CNS-205]
 gi|157914825|gb|ABV96252.1| protein of unknown function UPF0118 [Salinispora arenicola CNS-205]
          Length = 487

 Score = 94.5 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 99/297 (33%), Gaps = 14/297 (4%)

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
            +    +  V  +   +  L  +    +  + EL  K   ++Q    +  WL   P  + 
Sbjct: 192 RSLATAVVLVGGLAAVVGTLTLVVNEFIQGVPELSEK---SSQGVRQIQDWLRTGPLHLD 248

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +L        + +   +           +   A        +     I ++ A FFF 
Sbjct: 249 DRQLDNYINEAEKWINDNTAG---------LTSGALSTAATLAEVLTGTILVLFATFFFL 299

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           RDG  I + L  L             R   + + +      ++A  + L +G    +  +
Sbjct: 300 RDGGRIWRFLVRLLPVNARWKVDDAGRASWQTLGAYVRATVLVAFIDALGIGIFLVIFEI 359

Query: 239 PSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P    L  +  + + IP  GA +S     +  L+      A  +         +    L+
Sbjct: 360 PFAFPLAALVFLASFIPIVGATLSGGVAVLVALVDSGPITALIILGVVIGVQQLEGHVLQ 419

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENK 353
           P ++G  + +  L    G+  GV   G+ G  I  P++  L   + + +  ++ E  
Sbjct: 420 PLIMGRAVAIHPLAVIVGIAAGVVLAGVTGALIAVPLIAVLNTAVRRLAARSVPETP 476


>gi|70726551|ref|YP_253465.1| hypothetical protein SH1550 [Staphylococcus haemolyticus JCSC1435]
 gi|68447275|dbj|BAE04859.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 409

 Score = 94.5 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/349 (15%), Positives = 130/349 (37%), Gaps = 14/349 (4%)

Query: 15  MIMFIILVSLYFLKGFF-------APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +++FI     Y  + F        AP++ +LI+ +   P+ +       E      ++  
Sbjct: 44  IVIFIFDKISYVFEPFIIIFNTIVAPIILSLILFYLINPVIN-----LMERYNIPRLLGI 98

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKH 126
           + V    +     +    +  + + ++++       +      +  +    + S  +T+ 
Sbjct: 99  IIVFLAIVGGATLIINLLIPLIGDQITRLANNFPKYVDKFNNAIDQVTHFSFLSSFYTQI 158

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                S+     + + +    F       F    ++  + ++     LFF  +DG    +
Sbjct: 159 QDWLDSVSNKIPSMVSSYFDGF-GTKIRSFAEAIVNVGVVLVTTPFVLFFMLKDGHKFKE 217

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
               +    F   +  +   +   + S   G  I++   G++L   Y + G+   + L  
Sbjct: 218 YSTKIMPPKFRKDYHDLMEKMSVQVGSYIQGQIIVSFCIGILLFIGYSIIGLDYGLVLAC 277

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           I A+ +++P   P    + +I + I  + F    L +   +  FI    + P ++G  +K
Sbjct: 278 IAAVTSVVPYLGPTIAISPAIIIAIITSPFMLLKLIVVWTLVQFIEGHFISPNVMGKTLK 337

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +  L   F L+     +G++G+ +G    A++ V+     +  K    K
Sbjct: 338 IHPLTIIFILLSAGNLLGIVGVILGIPGYAILKVLVSHLFLLFKRRYNK 386


>gi|148262711|ref|YP_001229417.1| hypothetical protein Gura_0632 [Geobacter uraniireducens Rf4]
 gi|146396211|gb|ABQ24844.1| protein of unknown function UPF0118 [Geobacter uraniireducens Rf4]
          Length = 348

 Score = 94.5 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/322 (16%), Positives = 120/322 (37%), Gaps = 16/322 (4%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           YF++   + +L++L++ +   P+      +          I  +++    ++  L L  Y
Sbjct: 27  YFMRHTLSALLTSLVLAYLLNPLLKRLEKR-GLRRLSALGILYLALATAIVLASLLLVPY 85

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM--WASELWTKHLSHPQSLKILSETFLK 142
            + +++ L +           VP ++ ++ G M  W   L   +     +  +       
Sbjct: 86  LVHQLETLAT----------AVPSYVLNLKGDMDEWQVRLAPYYSGEEGAWLLARGKESL 135

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           T+    I           L    ++I   I +FF       I   +  L           
Sbjct: 136 TSLAQEISGMGYNRLTAILYGIFNLILAPILVFFMLLYKQHIKDLILRLTPPAQRRQLSD 195

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGAPI 260
           + + + + +    +GM +  +  G+++  A +L  +   V  GVIT   +++P  G A  
Sbjct: 196 LGKRINRSMERFIIGMFMDCLLVGILIAIALYLLDIQFAVLNGVITGFASIVPFVGVAFA 255

Query: 261 SFTAVSIYLLIKGN-IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
               + I     G+ +  A    ++  I + I    ++P ++   ++L  L   F ++  
Sbjct: 256 VIPPLLIGYAQSGDPLIIAKVCGVYFLINVIIEGNLIKPLVMRHTLRLNPLAVIFAVMAM 315

Query: 320 VRTMGLLGLFIGPVLMALIAVI 341
              MG  G+ +   L A+I + 
Sbjct: 316 GELMGFWGIVLAIPLAAVIKIC 337


>gi|152976977|ref|YP_001376494.1| sporulation integral membrane protein YtvI [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025729|gb|ABS23499.1| Sporulation integral membrane protein YtvI [Bacillus cytotoxicus
           NVH 391-98]
          Length = 372

 Score = 94.5 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 58/347 (16%), Positives = 123/347 (35%), Gaps = 15/347 (4%)

Query: 14  WMIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +++ I ++  Y L    G   P + AL   +   P+ +              +++ + V
Sbjct: 13  ILVIMITIIGFYVLIYIAGLIYPFIIALAFAYLINPVVNFLNRNLHFPRALSVLVSLILV 72

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
               +  + +L    +     L+  V       +   +  +         +L +K     
Sbjct: 73  FGAIVGLVTYLVTEVISATTYLLQIVTDKFPTIVQYAQQFALNNIMPLYDDLISKFNHLG 132

Query: 131 QSLKILSETFLKTNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +S +      ++  G +           I    + F          ++F+++A FF   D
Sbjct: 133 ESQQHTITQNIQNLGTEATKQMKDLLTAIISGLTNFISALPTTLTVLVFILLATFFISFD 192

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              ++ +      +    Y K I   + K           +     +++     +  VP 
Sbjct: 193 WHRLAHKTRHFLPNRVHGYGKTIFVDLRKASFGFVKAQLTLVSMTTIIVLVGLLILRVPY 252

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            + + +IT I+ ++P  G    F    IY+   G+   A  L +   I + +  + + P 
Sbjct: 253 AITIALITGIVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIIVI-VQRQIMEPK 311

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           ++   I L  LPT   L  G +  G LGL +GPV + L+  + K  +
Sbjct: 312 VLSSNIGLDPLPTLVALFVGFKLYGFLGLIVGPVTLVLLNTLHKAHV 358


>gi|254478928|ref|ZP_05092290.1| sporulation integral membrane protein YtvI [Carboxydibrachium
           pacificum DSM 12653]
 gi|214035150|gb|EEB75862.1| sporulation integral membrane protein YtvI [Carboxydibrachium
           pacificum DSM 12653]
          Length = 349

 Score = 94.5 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/349 (15%), Positives = 127/349 (36%), Gaps = 6/349 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           MR   +  + ++   +  I  + ++ +  F  P + AL++     P  +    K +    
Sbjct: 1   MRYGDIIKKTLLIVAVFIIFYLIIFKIIPFLMPFVVALLLAVIIDPGVNFLEKKLKVPRG 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             + I  + ++ +    +       + E+  L     ++  +   +   + ++   +   
Sbjct: 61  LASFILLLILIGVIGSLIAISITQLIYELSSL---AEISTNYANTINDIILNLVDRIRMY 117

Query: 121 EL-WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            +    +++      + S     +     +  +   F     ++    +  ++A FF  +
Sbjct: 118 YISLPPNITSLIESNMQSILNYVSLFAKNLATWLLNFATKLPNFFFMTLITLVATFFISK 177

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D   I   +       +  + K I   + K        +  I +   L +     + G  
Sbjct: 178 DKQLILDFIKRQIPSHWAQHAKNIQVDLLKTFFGYLRAVATIMLITFLEVSIGLAIIGFD 237

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
               LG++  I+  +P  G+       ++Y +I  N      L +   + + +V + + P
Sbjct: 238 YPFLLGLLVTIVDALPVLGSGAVMVPWALYNIIMKNYMVGIYLLILYGLVV-VVRQMIEP 296

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            +VG  I L  L T   +  GV+  G +GL IGPV + +   + K  I+
Sbjct: 297 KIVGQSIGLHPLVTLLSMFIGVKLFGAIGLVIGPVFVVVFKALQKAEII 345


>gi|217964991|ref|YP_002350669.1| membrane protein YueF [Listeria monocytogenes HCC23]
 gi|290892901|ref|ZP_06555891.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|217334261|gb|ACK40055.1| membrane protein YueF [Listeria monocytogenes HCC23]
 gi|290557477|gb|EFD91001.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|307570449|emb|CAR83628.1| membrane protein, putative [Listeria monocytogenes L99]
          Length = 378

 Score = 94.5 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/340 (15%), Positives = 121/340 (35%), Gaps = 14/340 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           + +    I+F++L   Y            F P+L A  + +   P+      +K      
Sbjct: 17  EILAVVAILFVLLQMKYIFSPIGIIVSTLFMPILVAGFLFYLFNPLVLFLEKRKVPR-LL 75

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++  ++ + L ++ ++ L      ++ EL   +    Q      +WL  +       +
Sbjct: 76  SVILIFIAFITLVVLAVMQLGPTLADQVAELAKAIPGYWQ---DFEKWLQGLSNNSALKD 132

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L    +        +S   + +  +D +             + + ++ +   +F+ ++DG
Sbjct: 133 L---DIKQELEKLNISLPKIMSVVVDGVASSFGAIISFVSSFVMILVTVPFIVFYMFKDG 189

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               +           +  K+I + + K I +      I  +  GL     Y + G P  
Sbjct: 190 HKFVESSGKFFPAGIRSEAKQIIKEMNKTISTYISSQAIDCMFVGLFTFIGYLIIGQPYA 249

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +  G I     +IP   P    A ++ + +  +   A  + +   I   I    L P+++
Sbjct: 250 LLFGFIAGATNIIPYLGPFLGAAPAVIVALFTSPVQALLVIVVVTIVQQIDSNLLSPYIM 309

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           G  + +  L     L+      G+ G+ +G  L A++  I
Sbjct: 310 GKSLSIHPLTIIIILIVAGNLAGIFGMILGVPLYAVVKTI 349


>gi|55821153|ref|YP_139595.1| hypothetical protein stu1142 [Streptococcus thermophilus LMG 18311]
 gi|55737138|gb|AAV60780.1| predicted membrane protein of the putative permease (PerM) family
           [Streptococcus thermophilus LMG 18311]
          Length = 392

 Score = 94.5 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 131/360 (36%), Gaps = 19/360 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYF---LKGFFAPVL-------SALIIGFTSWPI---YSSF 51
           +LN Q ++ ++I+ +I +++     +   F+PV+         L+I    + +       
Sbjct: 18  ILNNQAVVSFLILLLIGLTVLIFTKISPIFSPVIQFLTIVMLPLVISMLLYYLIKPLVLL 77

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS 111
           + +   + T   ++    +  L +  +         ++  L+                  
Sbjct: 78  VERTGLNRTMSILVIYAILALLLVWGISTAIPNLQDQILILLRNAPSYISRANSETERWL 137

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
            +P            LS   +  I       T+ + +I  FAS    +     ++II   
Sbjct: 138 KLPILSNFHGDLEAMLSDFSARMINYAENFSTSALSWIGTFASTVARVT----VAIILTP 193

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
             LF+  RD   +     S     F     ++   +   +     G   +AI   ++   
Sbjct: 194 FILFYLLRDSQKLKHSFVSALPTRFRETTVRMLSDINNQLEGYVRGQVTVAIVIAIMFCI 253

Query: 232 AYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
            + + G+   +  G++   + MIP  G+ I+   V I  L++G       L ++  IE  
Sbjct: 254 MFKIVGLRYGMTFGILAGFLNMIPYLGSFIAMVPVVIMGLVQGPTMLIKVLIIF-VIEQT 312

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           I  + + P ++G  + +  +   F L+      G+ G+ +G  + A + VI K+     +
Sbjct: 313 IEGRFVSPLVLGNKLSIHPITIMFILLTAGSLYGVWGVLLGIPIYASVKVIVKDIFDWYR 372


>gi|307332296|ref|ZP_07611372.1| protein of unknown function UPF0118 [Streptomyces violaceusniger Tu
           4113]
 gi|306882048|gb|EFN13158.1| protein of unknown function UPF0118 [Streptomyces violaceusniger Tu
           4113]
          Length = 547

 Score = 94.5 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/315 (14%), Positives = 106/315 (33%), Gaps = 18/315 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           W++M +I      +  F   +L    I     P  +    ++         +  ++   +
Sbjct: 184 WVLMRVISSVELVVLSFTVALL----ITALLEPTVTRL-RRRGVPRGLATALTFIAGFVV 238

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             + + F+ +  M  + E+  +V         + RWL   P  +   ++     S  +++
Sbjct: 239 MGLVVWFVVWQVMENVDEVSGEVQAGID---DLRRWLLHSPFHVTEKQINHIAKSLREAV 295

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
              +E                    + ++    ++  + +  F   DG  I      L  
Sbjct: 296 GANTEQITSAGLEGV---------TVVVEVLTGLLLTMFSTLFLLYDGPKIWSWTLKLVP 346

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                            + +   G  I+A+ + + +G   +   VP  V L V   + A 
Sbjct: 347 APAREGVAGAGPRAWATLTAYVRGTVIVALIDAIFIGVGLFFLHVPMAVPLAVFIFLFAF 406

Query: 254 IPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP    +   A+++ + L+   +F    + +       I    L+PF++G  +++  L  
Sbjct: 407 IPLVGAVVSGALAVVVALVTQGVFTGAMVLIVVLAVQQIEGHILQPFILGRAVRVHPLAV 466

Query: 313 FFGLVGGVRTMGLLG 327
              +  G    G+ G
Sbjct: 467 VLSVAAGSLIGGIGG 481


>gi|327440180|dbj|BAK16545.1| predicted permease [Solibacillus silvestris StLB046]
          Length = 409

 Score = 94.5 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 125/335 (37%), Gaps = 9/335 (2%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P +  +I+ +   P     +  K   +    +I  + V+ L  + +L +F +   +  
Sbjct: 69  ILPGVLGVILFYLLRPPLKLLVRWKVPRA-LAILILYIVVIALITLLVLLVFPFLRDQFT 127

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF-- 148
            LV +  +           L+ +    ++      +  + Q L   +++F+ T  +    
Sbjct: 128 NLVQEFPVV--LMALANDLLAFLNNSHFSEYFEKINFDYNQILTDFTDSFITTVKVTLGS 185

Query: 149 ----IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               +    + F        LS++ +    F+   +G  + + +  L           + 
Sbjct: 186 LATGVATGITGFLSTVTGIILSLVIVPFITFYLLYEGDKMPRFILLLFPPRMRKRIGDVL 245

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
             + K I S   G  +++   G+++   + + G+P  + LG +  I +++P   P     
Sbjct: 246 HDMDKQISSYIQGQILVSFCIGVMMTIGFLIIGMPYALLLGFLAMITSVVPYLGPAIAAT 305

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            +  + I  + +    L +   I   I  K + P ++G  + +  +   F L+      G
Sbjct: 306 PAAIIAIVNSPWLLVKLAIVWTIVQLIEGKFISPQIMGKSLSIHPITIIFVLLTAGSLFG 365

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           + G+ +G    ALI V+   +    K+   +  S+
Sbjct: 366 VPGVVLGIPGYALIKVLISHTYRLFKQRYNRFQSD 400


>gi|163868488|ref|YP_001609697.1| permease protein [Bartonella tribocorum CIP 105476]
 gi|161018144|emb|CAK01702.1| permease protein [Bartonella tribocorum CIP 105476]
          Length = 403

 Score = 94.5 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/306 (16%), Positives = 103/306 (33%), Gaps = 15/306 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P ++ +++ +   PI    + K      F  V+ T+ ++ +F+  L+ L      +++
Sbjct: 70  LLPFVAGIVLAYFLNPIVQ-LLEKFGIRRVFGTVLITLFIVIIFVAALIILIPIISWQIQ 128

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           + VS  +    +       +           +     S P  L+   +  L   G DFI 
Sbjct: 129 QFVSDGLPVYMNR------IQTFFVEHDFDWIRDYFGSDPNELRSNIKGLLGE-GSDFIT 181

Query: 151 RFASRF---GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
              +     G   ++     +   +  F+   D   + + +DSL         + I   +
Sbjct: 182 SLLNSLLKSGKSIVNIVSLFVVAPVVTFYMLLDWPRMVRAIDSLIPRDHLETVRSIFHEM 241

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP----GGAPISFT 263
            + I     G   + +  G        +AG+   + +G+   +++ IP        +   
Sbjct: 242 DRAIAGFVRGQGTVCLILGGYYAIGLTIAGLNFGLLIGMFIGLISFIPYIGTMSGLLLSV 301

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
            ++       N      +     I  FI    L+P LVG  + L  +   F L       
Sbjct: 302 GIAWVQFYPNNWGGIIVVLALFLIGQFIEGYVLQPKLVGSSVGLHPVWLMFSLFAFSSLF 361

Query: 324 GLLGLF 329
           G  G+ 
Sbjct: 362 GFTGML 367


>gi|160914502|ref|ZP_02076717.1| hypothetical protein EUBDOL_00508 [Eubacterium dolichum DSM 3991]
 gi|158433660|gb|EDP11949.1| hypothetical protein EUBDOL_00508 [Eubacterium dolichum DSM 3991]
          Length = 380

 Score = 94.5 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 65/368 (17%), Positives = 125/368 (33%), Gaps = 25/368 (6%)

Query: 1   MRETMLNPQGIMRWMIMFII---LVSLYFLKGF-------------FAPVLSALIIGFTS 44
           MRET      +    I+FII   +  ++ +  F               P +  ++I F  
Sbjct: 1   MRETDKKLNRLTMKNILFIITFTIALVWVILHFNECIEAALMILGLCKPFIYGIMIAFVF 60

Query: 45  WPIYSSFISKKEE------SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVL 98
               S F  K  +       +   A++A + ++ L       +    +  ++ L+  +  
Sbjct: 61  HLPLSYFQRKLPKSIKGKTRNIVAAILALLVIIGLLTFIFWIVVPQVVDSVRSLIVTLPG 120

Query: 99  ANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGM 158
             +  + +      I G    SEL  +           +  F+K      +   AS F  
Sbjct: 121 YVEDVMGMLE--QAISGKKIPSELVEQINEFGDGFVEAASNFVKEKLPQLL-SMASGFAN 177

Query: 159 IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
              +  ++++  +       R    + + L +        Y   +  +V K   S   G 
Sbjct: 178 GIANTFMAVVIAVYLTVSKDRLIRQLKRALFAFCSEKKYHYLLHVGELVNKTFSSFLTGQ 237

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA 278
              A+  G++      +   P    L VI     +IP    I   AVS  L+   N    
Sbjct: 238 LTEALIIGVLCYIGCLVFRFPYAPILSVIIGCTNIIPIFGAIFGVAVSALLVAFVNPLQG 297

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
               ++G +        + P +VGG + L  L   F +  G    G +G+ +G    ++I
Sbjct: 298 VFFVIFGIVLQQFESNLIYPKVVGGSVGLSGLWVLFAITIGGGLFGFVGMLLGLPTFSVI 357

Query: 339 AVIWKESI 346
             + +E I
Sbjct: 358 YFLLREEI 365


>gi|308070328|ref|YP_003871933.1| hypothetical protein PPE_03578 [Paenibacillus polymyxa E681]
 gi|305859607|gb|ADM71395.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 355

 Score = 94.5 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/351 (15%), Positives = 123/351 (35%), Gaps = 24/351 (6%)

Query: 14  WMIMFIILVSLYFLKG-----------FFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
            ++  +IL  ++ L+              AP   A+II +   P+ S    +K   S   
Sbjct: 16  TLLGLVILYFIWLLRPLFLHLYEFLKTIIAPFAVAMIISYVLNPVVSMLGGRKVPRS--- 72

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                V+V+ ++ V L  L    M  +   + ++   N+H   +      +   M +  L
Sbjct: 73  -----VAVLLIYAVFLASLVVILMNLIPMFIEQLDELNEHLPELTMHAQGLMTNMDSGIL 127

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                +         E  + T    F+            +   ++  +   +F+  +D  
Sbjct: 128 PQGVRTGMNQWFFQLENRMATGISSFMDNIGGMI-----NMLFNVFIVPFLIFYILKDFD 182

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              + + S            + + + + + +   G  ++ +  G++    Y L G+P  +
Sbjct: 183 VFERTIVSYLPRSRRKAIVSVLKEIDQALGNYVRGQLLVCVIIGVMAYLGYMLIGMPYAL 242

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L  + A+  ++P   P    A ++ +    ++     + +       +    + P +VG
Sbjct: 243 LLAGVVAVFNIVPYLGPFLGAAPAVVMASTVSLKMVLLVVVVNTCIQVLESNVISPQVVG 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             + L  +   F L+ G    G+ GL +   +MA+  V  +       + K
Sbjct: 303 RTLHLHPIAIIFALLVGGEIAGITGLILAVPVMAVFKVGLQHFFAYYVKRK 353


>gi|66046916|ref|YP_236757.1| hypothetical protein Psyr_3687 [Pseudomonas syringae pv. syringae
           B728a]
 gi|289677079|ref|ZP_06497969.1| hypothetical protein PsyrpsF_27593 [Pseudomonas syringae pv.
           syringae FF5]
 gi|63257623|gb|AAY38719.1| Protein of unknown function UPF0118 [Pseudomonas syringae pv.
           syringae B728a]
 gi|330972386|gb|EGH72452.1| hypothetical protein PSYAR_18005 [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 357

 Score = 94.5 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/343 (16%), Positives = 132/343 (38%), Gaps = 14/343 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +++  +  L     P L AL++ +   P+                   T+SV+ +F +
Sbjct: 13  LALLVAFVVLLHPILTPFLVALLLAYMGDPLVDRLERAGLSR--------TLSVVVVFGL 64

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLK 134
             L L    ++ +  L  ++    +    +  WL    +P       L        +   
Sbjct: 65  FTLVLMALLLILVPMLAKQLFRLYELAPQILDWLQHAALPWVQAKFGLADGFWKFDKIKA 124

Query: 135 ILSETFLKT-NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            +SE   +  + +  +   A+   +  + +  +++ + +  F+  RD   ++ ++  L  
Sbjct: 125 AISEHMGQAGDIVSIVLSQATASSLALIGWLTNLVLIPVVCFYLLRDWDIMTGKIRGLLP 184

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
               A   K++    +V+ +   G  ++ +G G++  +   L G+   + +GVI  + A+
Sbjct: 185 RQREAQIVKLAGECHEVLGAFIRGQLLVMVGLGVIYAAGLMLVGLELGLLIGVIAGLAAI 244

Query: 254 IPGGAPISFTA---VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +P    +       V+      G+++    +     I   +    L P LVG  I L  +
Sbjct: 245 VPYMGFVIGIGSALVAGLFQFGGDLYPMMGIVAVFMIGQALEGMVLTPLLVGDRIGLHPV 304

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              F ++ G    G  G+ +   + A+I V+ +      K+++
Sbjct: 305 AVIFAILAGGELFGFTGILLALPVAAVIMVLVRHMHDLYKDSE 347


>gi|300932605|ref|ZP_07147861.1| hypothetical protein CresD4_00930 [Corynebacterium resistens DSM
           45100]
          Length = 385

 Score = 94.5 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/293 (18%), Positives = 107/293 (36%), Gaps = 12/293 (4%)

Query: 47  IYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV 106
           +      +        A+++   ++ L  + ++F         + L  K   A +    V
Sbjct: 62  VNQLLTRRLHFPRALSALLSLFGLIGLVALGVVFAVNQFASSYQSLADK---AQEGATEV 118

Query: 107 PRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLS 166
             W+ D P  +  S+       +  SL      + ++N    +   A   G   +D   +
Sbjct: 119 ANWVHDGPLQVPRSD-------NSHSLVTQISQWAQSNSHS-LYSNAVDAGTTTIDTFAA 170

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
           I+  +IA FFF  DG  IS+ L  L                   +++      ++A    
Sbjct: 171 ILICLIATFFFLFDGPKISRFLIGLFPRQSQPDITAAGAAAWSTLKAYARMQIVVASINA 230

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI-YLLIKGNIFNATCLFLWG 285
           L +G   W+ G P  V +  +  I + +P    +   A+++    + G + +A  + +  
Sbjct: 231 LGIGIGAWILGTPLVVPITAVVFICSFVPIVGAVVSGAIAVLIAFVDGGLTHAIIMTIIV 290

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
               F+    L+PFL+G  +++  L     +  G     L G      + A+I
Sbjct: 291 IGVHFLETHGLQPFLMGHAVRVHPLAVVVVVAAGTYLFSLAGALFAVPITAMI 343


>gi|126651797|ref|ZP_01723999.1| hypothetical protein BB14905_15335 [Bacillus sp. B14905]
 gi|126591475|gb|EAZ85582.1| hypothetical protein BB14905_15335 [Bacillus sp. B14905]
          Length = 399

 Score = 94.5 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/333 (12%), Positives = 122/333 (36%), Gaps = 5/333 (1%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P + A+I  +   P+ +  +  +     +  +I  ++V+ +  + ++ ++ +   +  
Sbjct: 61  ILPGVLAVIGYYLLRPLLAILVRWRIPR-IWGILILYIAVIGVITLLVVLVYPFLRDQFT 119

Query: 91  ELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
            LV +      +       + +      +  ++   +    ++        +K    +  
Sbjct: 120 NLVQEFPEYFMKFTEKFVAFFNHSRFNDYLDKINFDYNEVVKNFTTDMVKTVKDTAANIA 179

Query: 150 PRFASRFGMIF---LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
              AS             LS++ +   LF+  ++G  + + +  +          +I   
Sbjct: 180 QGVASGITGFLSTLTGIVLSLVTVPFILFYLLKEGEKLPKFMLKVCPPRMRKEVTEIFHD 239

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           + K I S   G  ++++  G ++   + + G+   + LG +  I +++P   P+     +
Sbjct: 240 MDKQISSYIQGQILVSMCIGAMVTIGFLIIGMKYALLLGFLAMITSVVPYLGPVIAITPA 299

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           + + +  +      L +   I   I  K + P ++G  + +  +   F L+      G+ 
Sbjct: 300 VIIALVTSPLMLIKLAIVWTIVQLIEGKFISPQIMGKSLSIHPITIIFVLLTAGSLFGVP 359

Query: 327 GLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G+ +G    A+  V+        K+   +   +
Sbjct: 360 GVILGIPGYAIFKVLVTHLFKLFKQRYNRYEDD 392


>gi|255033951|ref|YP_003084572.1| hypothetical protein Dfer_0136 [Dyadobacter fermentans DSM 18053]
 gi|254946707|gb|ACT91407.1| protein of unknown function UPF0118 [Dyadobacter fermentans DSM
           18053]
          Length = 387

 Score = 94.1 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 54/335 (16%), Positives = 121/335 (36%), Gaps = 27/335 (8%)

Query: 19  IILVSLYF-------LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           ++L+ LY        L+    P   A +I     PIY+ F   K      +A++ T+ + 
Sbjct: 34  MVLIGLYLFFHILDSLQEIIVPFAFAGLIAILLNPIYNRFQRWKFNK--IVAIVLTIFIA 91

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L +  ++F     +++  ++V ++                    M   +   + LS   
Sbjct: 92  ILVVGGIMFFLSSQIVQFGDMVPQLEKKT----------------MKLLDNLQEWLSTTF 135

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            +    +  +    I+    +  +            + + + +F        I   +  +
Sbjct: 136 GISTEKQMSMLDEAINNSRTYVGKTVNTLFGIISFFVLIPLYIFLLLFYKPLILNFIFEV 195

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
            +        +I +     ++S  +G+ I       +   A  + GVP  + LGVI AI+
Sbjct: 196 FDENNSDQVAEILQETKGAVQSYIVGLMIETTIIAALNSVALLILGVPYALLLGVIGAIL 255

Query: 252 AMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            +IP  GG       V I  + K        +     +  F+ +  + P +V   + +  
Sbjct: 256 NLIPYIGGIIAIALPVLISFITKDGYTTPLLIIGAYTVIQFLDNNIIVPRVVSSKVSVNA 315

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L +   ++ G    G+ G+F+    +A++ +I+  
Sbjct: 316 LISILVVLLGGTLWGVSGMFLSIPFVAVLKIIFDR 350


>gi|325687852|gb|EGD29872.1| permease [Streptococcus sanguinis SK72]
          Length = 392

 Score = 94.1 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/313 (16%), Positives = 115/313 (36%), Gaps = 8/313 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP-LLFLFYY 84
           FL     PV+ A ++ +   PI       K      +A+     ++   I+  L      
Sbjct: 52  FLGVIMLPVILAGLLYYLLNPIVDWMEKHKINR--LVAITIVFVLIAFLIIWGLAVAIPS 109

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
              ++   V  V    +      +++ D+     +++   +   +  +L      +  +N
Sbjct: 110 LQHQVMAFVRNVPAYLKQAD---KFIDDVVTKHISADFKPQIEEYTSNLSSQITDW-ASN 165

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
                  +A           ++II M   LF+  RDG ++   +       F   + ++ 
Sbjct: 166 FSSRAVNWAGNLISTTSQIIVAIIIMPFILFYLLRDGKNLKGYVTQFLPTKFRESFGQVM 225

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
             +   + +   G   +AI   L+    + + G+   V LGVI  ++ ++P  G+ ++  
Sbjct: 226 TDINSQLANYVRGQVTVAIIVALMFIVFFKIIGLRYGVTLGVIAGVLNLVPYLGSFLAML 285

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
                 LI G       + +   IE  I  + + P ++G  + +  +   F L+      
Sbjct: 286 PALAIGLIAGGPVMLAKVIVVFIIEQTIEGRFVSPLVLGSQLSIHPITILFVLLTSGTMF 345

Query: 324 GLLGLFIGPVLMA 336
           G+ G+F+G    A
Sbjct: 346 GIWGVFLGIPAYA 358


>gi|257877173|ref|ZP_05656826.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
 gi|257811339|gb|EEV40159.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
          Length = 393

 Score = 94.1 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/319 (13%), Positives = 108/319 (33%), Gaps = 5/319 (1%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P++ A I+ +   P       K      +      + V+ L +  ++ +      +    
Sbjct: 58  PIILAGILYYLMNPTVDYLERK-GIKRIYSIFGLFILVVGLIVWGVVVIIPKIQEQSMSF 116

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
              +         +   +++I      S++  +  +  + L       ++      I   
Sbjct: 117 ADNLPSYLTI---IENKVNEILSDPIFSQVQEQIEASNEKLISSLTDIVQNLSRSTIQNL 173

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
            S FG +     L++I M   LF+  +DG  ++                 + + +   + 
Sbjct: 174 GSFFGAVAT-IVLAVITMPFILFYLLKDGRKLAPYFVKFLPTKMRQPSLVVLKEMNDQVS 232

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
           S   G   +A    ++    + + G+   + LG+    + +IP          +++L I 
Sbjct: 233 SYIRGQLTVAFAVAVMFMIGFSIIGLDYAITLGIAAGFLNLIPYLGSFLAMIPAVFLGIV 292

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
           G       + +   IE  I  + + P ++G  + +  +     L+   +  GL+G+ +G 
Sbjct: 293 GGPVLLIQVLIVFVIEQTIEGRLISPLVLGNELSIHPVTILLVLLTSGKLFGLVGVILGI 352

Query: 333 VLMALIAVIWKESIMAIKE 351
            + A   V+          
Sbjct: 353 PVYAAAKVVITHVFEWYTR 371


>gi|238752065|ref|ZP_04613549.1| permease perM [Yersinia rohdei ATCC 43380]
 gi|238709765|gb|EEQ01999.1| permease perM [Yersinia rohdei ATCC 43380]
          Length = 354

 Score = 94.1 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 124/358 (34%), Gaps = 18/358 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +PQ I   +I+      LYF  G  AP+L+A+++ +   WP     + +   S  
Sbjct: 10  RRRFTDPQVIALLVILLAGFCILYFFSGILAPLLAAIVLAYLLEWPTAR--LQRIGCSRP 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           + A I  V    + ++ +  +      +   L+S           +P+ L+   G     
Sbjct: 68  WAASIVLVVFGSIALLAVFVVAPTVWQQGNNLIS----------DMPKMLNKFNGFAQTL 117

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGI--DFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                 L     + +++E          + + + +    +  L   + +I + + LFF  
Sbjct: 118 PSRYPALVDAGIVDMMAENLRSKLSGMGESVVKISLASLIGLLTLAIYLILVPLMLFFLL 177

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D   +   +  +         +     + + I +   G  +  +  G+     +++ G+
Sbjct: 178 KDKEQMLNAVRRILPRNRGLAGQVWLE-MNQQITNYIRGKVVEMVVVGIATYVVFFVMGM 236

Query: 239 PSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTL 296
              + L V+     +IP  GA I    V +  L +  I      LF+   +   +    L
Sbjct: 237 NYALLLAVLVGFSVLIPYIGAVIVTIPVVLVALFQWGIGADFWTLFVAYLVVQGLDGNLL 296

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            P L    + L  L     ++      G  G+F    L  L+  +          + E
Sbjct: 297 VPVLFSEAVNLHPLVIILSVIIFGGMWGFWGVFFAIPLATLVKAVIHAWPEEFIPDAE 354


>gi|89095235|ref|ZP_01168157.1| transporter, putative [Oceanospirillum sp. MED92]
 gi|89080489|gb|EAR59739.1| transporter, putative [Oceanospirillum sp. MED92]
          Length = 366

 Score = 94.1 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 132/352 (37%), Gaps = 11/352 (3%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   Q     +   ++   +Y L    +P L   ++ + S PI     +    S T   +
Sbjct: 1   MTESQRWFFLIFALVMAGLVYLLAPILSPFLVGALLAYLSDPIADRLEAA-GLSRTTSVI 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           I  +++  + ++  L       ++++ L+ ++  A             +P  M    L  
Sbjct: 60  IVFIAMTAIVVMMFLLFIPKLGMQIQLLLERIPQAISLFEN-----QVLPWLMSTFSLEA 114

Query: 125 KHLSHPQSLKILSETFLKTN-GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                     IL     KT+  +  +    +R  M  + +  +++ + +  F+  RD   
Sbjct: 115 SAFEFSNLKSILIGDLQKTSDIMAQLLGGLTRSSMAIVAWVANLVLIPVVTFYLLRDWDV 174

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  ++  L            +R   +V+ +   G  ++ +  G+V     W+ G+   + 
Sbjct: 175 MMDKVKRLLPRNIEPKVSLWARECDEVLGAFMKGQLLVMVALGVVYAVGLWIVGLDLALL 234

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL---FIVDKTLRPFL 300
           +G+I  + +++P    I    V+  +       +   L   GA+ +    +    L P L
Sbjct: 235 VGMIAGLASIVPYMGFIIGIVVAG-VAAFMQFQDPIVLGYVGAVFIVGQMLEGMLLTPLL 293

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           VG  I L  +   F ++ G +  G +G+ +   + A+I V+ +      K +
Sbjct: 294 VGDRIGLHPVAVIFAIMAGGQLFGFVGVLLALPVAAVIMVLLRHLHEGYKSS 345


>gi|169828348|ref|YP_001698506.1| hypothetical protein Bsph_2843 [Lysinibacillus sphaericus C3-41]
 gi|168992836|gb|ACA40376.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 399

 Score = 94.1 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/333 (12%), Positives = 122/333 (36%), Gaps = 5/333 (1%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P + A+I  +   P+ +  +  +     +  +I  ++V+ +  + ++ ++ +   +  
Sbjct: 61  ILPGVLAVIGYYLLRPLLAILVRWRIPR-IWGILILYIAVVGVITLLVVLVYPFLRDQFT 119

Query: 91  ELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
            LV +      +       + +      +  ++   +    ++        +K    +  
Sbjct: 120 NLVQEFPEYFMKFTEKFVAFFNHSRFNDYLDKINFDYNEVVKNFTTDMVKTVKDTATNIA 179

Query: 150 PRFASRFGMIF---LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
              AS             LS++ +   LF+  ++G  + + +  +          +I   
Sbjct: 180 QGVASGITGFLSTLTGIVLSLVTVPFILFYLLKEGEKLPKFMLKVCPPRMRKEVTEIFHD 239

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           + K I S   G  ++++  G ++   + + G+   + LG +  I +++P   P+     +
Sbjct: 240 MDKQISSYIQGQILVSMCIGAMVTIGFLIIGMKYALLLGFLAMITSVVPYLGPVIAITPA 299

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           + + +  +      L +   I   I  K + P ++G  + +  +   F L+      G+ 
Sbjct: 300 VIIALVTSPLMLIKLAIVWTIVQLIEGKFISPQIMGKSLSIHPITIIFVLLTAGSLFGVP 359

Query: 327 GLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G+ +G    A+  V+        K+   +   +
Sbjct: 360 GVILGIPGYAIFKVLVTHLFKLFKQRYNRYEDD 392


>gi|16802627|ref|NP_464112.1| hypothetical protein lmo0584 [Listeria monocytogenes EGD-e]
 gi|47096877|ref|ZP_00234456.1| membrane protein, putative [Listeria monocytogenes str. 1/2a F6854]
 gi|224498663|ref|ZP_03667012.1| hypothetical protein LmonF1_02766 [Listeria monocytogenes Finland
           1988]
 gi|224502115|ref|ZP_03670422.1| hypothetical protein LmonFR_06292 [Listeria monocytogenes FSL
           R2-561]
 gi|254828349|ref|ZP_05233036.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|254900183|ref|ZP_05260107.1| hypothetical protein LmonJ_10230 [Listeria monocytogenes J0161]
 gi|254911263|ref|ZP_05261275.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254935591|ref|ZP_05267288.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|284800864|ref|YP_003412729.1| hypothetical protein LM5578_0612 [Listeria monocytogenes 08-5578]
 gi|284994050|ref|YP_003415818.1| hypothetical protein LM5923_0611 [Listeria monocytogenes 08-5923]
 gi|16409960|emb|CAC98663.1| lmo0584 [Listeria monocytogenes EGD-e]
 gi|47014742|gb|EAL05696.1| membrane protein, putative [Listeria monocytogenes str. 1/2a F6854]
 gi|258600742|gb|EEW14067.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|258608171|gb|EEW20779.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|284056426|gb|ADB67367.1| hypothetical protein LM5578_0612 [Listeria monocytogenes 08-5578]
 gi|284059517|gb|ADB70456.1| hypothetical protein LM5923_0611 [Listeria monocytogenes 08-5923]
 gi|293589194|gb|EFF97528.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 390

 Score = 94.1 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 60/336 (17%), Positives = 124/336 (36%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI    +  LK   AP++ A I  +   PI       K +   +   +  + ++ L I
Sbjct: 37  IAFIFDPLMVILKTVAAPIILAGISYYLFNPIIDWLEKHKWKR-GWAIALLYLVIIGLLI 95

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +   F+      ++  L                  S         +L  K  ++   +  
Sbjct: 96  LLFSFVIPAVKDQIVSLFKSFPGYWDQITQKFDEFSR---SSLFDQLKDKLNTNMSDIMK 152

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   +     I    S  G +  +  L+I+   + LF+  +DG  +   L  +    
Sbjct: 153 TLSTKGTSVINSAISSIGSIVGTVT-EVVLAIVTTPLVLFYLLKDGKKLPDFLLKMLPVN 211

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
             A+ +++       I S   G  I+++  G++L   Y + G+P  + L +I A  +++P
Sbjct: 212 GRAHTRQVLGEANHQISSYIRGQIIVSLCIGILLFIGYLIIGLPYALTLAIIAACTSIVP 271

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P      +I + I  + +    L +   +   +  K + P ++G  +K+  +   F 
Sbjct: 272 YLGPAIAITPAIIIAIVTSPWLLIKLIIVWCVVQLLEGKFISPQVMGKTLKVHPITILFV 331

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           ++      G+LG+       A++ VI     +  K 
Sbjct: 332 ILVAGNLFGVLGVIFAVPGYAVLKVIVTHVFIWFKR 367


>gi|327489296|gb|EGF21089.1| permease [Streptococcus sanguinis SK1058]
          Length = 392

 Score = 94.1 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/313 (16%), Positives = 109/313 (34%), Gaps = 8/313 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP-LLFLFYY 84
           FL     PV+ A ++ +   PI       K      +A+     ++   I+  L      
Sbjct: 52  FLGVIMLPVILAGLLYYLLNPIVDWMEKHKINR--LVAITIVFVLIAFLIIWGLAVAIPS 109

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
              ++   V  V    +        +       + S  +   +    S      T   +N
Sbjct: 110 LQHQVMAFVRNVPAYLKQADKFIDDV----VTKYISADFNPQIEEYTSNLSSQITDWASN 165

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
                  +A           ++II M   LF+  RDG ++   +       F   + ++ 
Sbjct: 166 FSSRAVNWAGNLISTTSQIIVAIIIMPFILFYLLRDGKNLKGYVTQFLPTKFRESFGQVM 225

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
             +   + +   G   +AI   L+    + + G+   V LGVI  ++ ++P  G+ ++  
Sbjct: 226 TDINSQLANYVRGQVTVAIIVALMFIVFFKIIGLRYGVTLGVIAGVLNLVPYLGSFLAML 285

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
                 LI G       + +   +E  I  + + P ++G  + +  +   F L+      
Sbjct: 286 PALAIGLIAGGPVMLAKVIVVFIVEQTIEGRFVSPLVLGSQLSIHPITILFVLLTSGTMF 345

Query: 324 GLLGLFIGPVLMA 336
           G+ G+F+G    A
Sbjct: 346 GIWGVFLGIPAYA 358


>gi|56963750|ref|YP_175481.1| transporter [Bacillus clausii KSM-K16]
 gi|56909993|dbj|BAD64520.1| transporter [Bacillus clausii KSM-K16]
          Length = 378

 Score = 94.1 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/342 (14%), Positives = 119/342 (34%), Gaps = 15/342 (4%)

Query: 14  WMIMFIILVSLYFLKGFFA---PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
             I+  ++ SL+     F+   P   A +  +   P+   F  K   S  F ++   +  
Sbjct: 16  IAIVVFLIGSLWVFAKVFSLTYPFWFAALFAWMLQPVARFFQQKLRFSRGFASLFGLLGG 75

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD---IPGGMWASELWTKHL 127
           + +    L  L +     +++   +V    + G    +   +    P       L+    
Sbjct: 76  ILVISAILTGLVFLIYFSLRQFFEQVPTWIEEGSEKMQIFFNETVWPYWQQVLGLFDTID 135

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL-------DYCLSIIFMIIALFFFYRD 180
               ++       L T   +F+                   ++ ++ +F+I++++F  + 
Sbjct: 136 VGTHNVLSEGIDQLGTVLGNFLGDIGQGVVDFLTTALLGLPNFLVAFLFIILSIYFMGKS 195

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                   D           K+  + + + +        I+      ++     +  + +
Sbjct: 196 WSYYQDVYDRHVPLRLRKKGKEFVQAIRRRLFGFLRAQFILMFVTACIVFVGLLIIQIDN 255

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
              L ++  I  ++P  G         IYL I G++     + +   I + I+ + L P 
Sbjct: 256 AWMLAIVVGIAELLPYLGTGTILIPWFIYLFITGDVSGGFGIAILYIIVV-IIRQLLEPK 314

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++   + L  +     L  G+R  G  GLF+GP ++  I ++
Sbjct: 315 VLSSHMNLNPIAVLISLFAGLRLFGAFGLFLGPAILVFIVIL 356


>gi|322381290|ref|ZP_08055293.1| hypothetical protein PL1_0204 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154866|gb|EFX47137.1| hypothetical protein PL1_0204 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 390

 Score = 94.1 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 52/326 (15%), Positives = 122/326 (37%), Gaps = 5/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI +     +K    P++ A I  +   PI       K       ++I    V+   +
Sbjct: 52  ISFIFVPIGIIVKTVMLPLILAGIAFYLLNPIVDLLERHKINR--IYSIIGLFLVIIGVV 109

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L+   +  + +  ++++ V    ++G  V    ++  G     +   K  +    +  
Sbjct: 110 TILILTVFPFVKD--QVLNLVDNLPKYGQQVAEKFNEFAGTSLFHQFNDKLNNVSTDIMN 167

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                      +     +   G +  +  L+I  +   LF+  +DG  + + + ++    
Sbjct: 168 YISEKSSVILQNAWASVSGVVGTVT-EIVLAIATLPFILFYLLKDGRKLPRFILNMLPVK 226

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
              +  ++   +   I S   G  I++   G +L   Y + G+   + L +I ++ +++P
Sbjct: 227 TREHTYQMMYEMHHQISSYIRGQIIVSFCIGFLLFVGYLVIGLNYALVLAIIASLTSIVP 286

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P+     +I +    +      L +   I   I  K + P ++G  + +  +   F 
Sbjct: 287 YLGPVIAITPAIIISAVTSPAMLVKLAVVWIIVQSIEGKFISPQVMGKNLSVHPITIIFV 346

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++ G    G+LG+       A++ VI
Sbjct: 347 ILIGGNLFGILGIIFAVPGYAVLKVI 372


>gi|294626250|ref|ZP_06704853.1| permease [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122]
 gi|294664600|ref|ZP_06729940.1| permease [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292599396|gb|EFF43530.1| permease [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292605628|gb|EFF48939.1| permease [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 388

 Score = 94.1 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/330 (15%), Positives = 127/330 (38%), Gaps = 12/330 (3%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           +L  +  L     P + AL++ +   P+          S     ++  V    LF++ L+
Sbjct: 25  VLWVVSLLAPILTPFVLALLLAWLGDPLVDRIERA-GRSRNVAVMLVFVLATLLFVLALM 83

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            L      ++  L+  +       I      + IP     + +       P+ L     +
Sbjct: 84  ILVPMIERQIMTLIDALPQMRNWAIG-----TAIPWLEAKTGMQLMAWLDPERLIDWIRS 138

Query: 140 FLKTNGI--DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
             +  G     +  + SR G   + + +++  + I  F+F RD   + +++ ++    + 
Sbjct: 139 HWEQAGGAAKTLFGYVSRSGFAMVTWVINLALLPILAFYFLRDWDRLVERVAAVIPRAYI 198

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-- 255
               ++++    V+     G  ++ +  G +  +   + G+   + +G+I  +++ IP  
Sbjct: 199 GTASRLAQESNDVLGGFIRGQFLVMLALGAIYATGMSIIGLNLGLLIGIIAGLISFIPYL 258

Query: 256 -GGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
                I    ++  +  +G ++     + +   +   +    L P +VG  I L  +   
Sbjct: 259 GATTGIVLALLAAIVQAQGLDLKLLIGVGVVFTVGQLLESYVLTPRIVGDKIGLHPVAVI 318

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           F ++ G +  G LG+ +   + A+  V+ +
Sbjct: 319 FAVMAGGQLFGFLGMLLALPVAAVANVLLR 348


>gi|209559329|ref|YP_002285801.1| hypothetical protein Spy49_0794 [Streptococcus pyogenes NZ131]
 gi|209540530|gb|ACI61106.1| Membrane protein, putative [Streptococcus pyogenes NZ131]
          Length = 393

 Score = 94.1 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 60/337 (17%), Positives = 124/337 (36%), Gaps = 7/337 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+ +  + F      P++ + I+ + + P+    I+    + T    I    +  LF+
Sbjct: 43  ISFLFMPVISFFAVIMLPLVISTILYYLTKPLVD-LINHLGPNRTTSIFIVFGLITLLFV 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +         ++   +  +             L +    +         L+H     +
Sbjct: 102 WAISGFVPMVQTQLTSFIEDLPKYVGKVNEEANKLLENEWLVSYKPQLQAMLTHTSQKAL 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   N ID+   FA     I     ++II     LF+F RD   +   L ++    
Sbjct: 162 DYAQSFSKNAIDWAGNFAGAIARIT----VAIIISPFILFYFLRDSSHMKNGLVNVLPLK 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   + K +     G   +AI  G +    + L G+   +  G+I   + MIP
Sbjct: 218 LRVPMVRVLGDINKQLSGYVQGQVTVAIVVGFMFSIMFSLVGLKYAITFGIIAGFLNMIP 277

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G+ ++   V I  +++G       L ++  IE  I  + + P ++G  + +  +   F
Sbjct: 278 YLGSFLAMIPVVIMAMVQGPFMLFKVLVIF-MIEQTIEGRFVAPLVLGNKLSIHPITIMF 336

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            L+      G+ G+F+   + A + V+ KE     K+
Sbjct: 337 LLLTAGSMFGVWGVFLVIPIYASVKVVIKELFDWYKK 373


>gi|111657407|ref|ZP_01408160.1| hypothetical protein SpneT_02001377 [Streptococcus pneumoniae
           TIGR4]
          Length = 332

 Score = 94.1 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/323 (15%), Positives = 114/323 (35%), Gaps = 11/323 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             PV+ + ++ +   PI       K            +++  +F++  LF+ +   + + 
Sbjct: 1   MLPVILSGLLYYLLNPIVDWMEKHKVNR--------VIAITIVFVIIALFIIWGLAVAIP 52

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASEL---WTKHLSHPQSLKILSETFLKTNGID 147
            L  +V+   ++       +  I  G+ A  L   +   L    +      T L +    
Sbjct: 53  NLQRQVLTFARNVPVYLEDIDRIVNGLVAQHLPDDFRPQLEQVLTNFSSQATVLASKVSS 112

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
               + S F        +++I +   LF+  RDG  +   L             ++   V
Sbjct: 113 QAVNWVSAFISGASQVIVALIIVPFMLFYLLRDGKGLRNYLTQFIPRKLKEPVGQVLSDV 172

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
            + + +   G   +AI   ++    + + G+   V LGV   I+ ++P          ++
Sbjct: 173 NQQLSNYVRGQVTVAIIVAVMFIIFFKIIGLRYAVTLGVTAGILNLVPYLGSFLAMLPAL 232

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            L +         + +   +E  I  + + P ++G  + +  +   F L+      G+ G
Sbjct: 233 VLGLIAGPVMLLKVVIVFIVEQTIEGRFVSPLILGSQLNIHPINVLFVLLTSGSMFGIWG 292

Query: 328 LFIGPVLMALIAVIWKESIMAIK 350
           + +G  + A   V+        K
Sbjct: 293 VLLGIPVYASAKVVISAIFEWYK 315


>gi|218516479|ref|ZP_03513319.1| putative permease protein [Rhizobium etli 8C-3]
          Length = 161

 Score = 94.1 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/139 (30%), Positives = 78/139 (56%), Gaps = 1/139 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++      RW+++ I+   +YF  GF  PVL+AL+IGF SWP+Y   +++   ++T 
Sbjct: 23  RTPLIPSISAARWLLVLIVAAGVYFFYGFLVPVLAALVIGFASWPLYRKLLARVGGNTTI 82

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWAS 120
            A IA + ++   ++P+ F   Y   E++  ++  + AN+ G   P W++ +P  G +  
Sbjct: 83  AATIAIIMIVTFLVIPIGFAATYTTGEVRTWLAWAIHANRSGASTPGWIAALPFAGPYLD 142

Query: 121 ELWTKHLSHPQSLKILSET 139
           ELWTK++  P +L  L + 
Sbjct: 143 ELWTKYIGSPGALGELIQA 161


>gi|327459873|gb|EGF06213.1| permease [Streptococcus sanguinis SK1057]
          Length = 392

 Score = 94.1 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 121/337 (35%), Gaps = 8/337 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP-LLFLFYY 84
           FL     PV+ A ++ +   PI       K      +A+     ++   I+  L      
Sbjct: 52  FLGVIMLPVILAGLLYYLLNPIVDWMEKHKINR--LVAITVVFVLIAFLIIWGLAVAIPS 109

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
              ++   V  V    +      +++ D+     +++   +   +  +L      +  +N
Sbjct: 110 LQHQVMAFVRNVPAYLKQAD---KFIDDVVTKYISADFKPQIEEYTSNLSSQITDW-ASN 165

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
                  +A           ++II M   LF+  RDG ++   +       F   + ++ 
Sbjct: 166 FSSRAVNWAGNLISTTSQIVVAIIIMPFILFYLLRDGKNLKGYVTQFLPTKFRESFGQVM 225

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
             +   + +   G   +AI   L+    + + G+   V LGVI  ++ ++P  G+ ++  
Sbjct: 226 TDINSQLANYVRGQVTVAIIVALMFIVFFKIIGLRYGVTLGVIAGVLNLVPYLGSFLAML 285

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
                 LI G       + +   IE  I  + + P ++G  + +  +   F L+      
Sbjct: 286 PALAIGLIAGGPVMLAKVIVVFIIEQTIEGRFVSPLVLGSQLSIHPITILFVLLTSGTMF 345

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           G+ G+F+G    A   V         ++      ++F
Sbjct: 346 GIWGVFLGIPAYASAKVAIAAIFKWYQKVSGLYEADF 382


>gi|299537107|ref|ZP_07050410.1| hypothetical protein BFZC1_13853 [Lysinibacillus fusiformis ZC1]
 gi|298727348|gb|EFI67920.1| hypothetical protein BFZC1_13853 [Lysinibacillus fusiformis ZC1]
          Length = 399

 Score = 94.1 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/333 (12%), Positives = 127/333 (38%), Gaps = 5/333 (1%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P + A+I  +   P+ +  +  +     +  +I  ++V+ +  + ++ ++ +   +  
Sbjct: 61  ILPGVLAVIGYYLLRPLLAILVRWRIPR-IWGILILYIAVIGVITLLVVLVYPFLRDQFT 119

Query: 91  ELVSKVVLANQHGIP-VPRWLSDIPGGMWASEL---WTKHLSHPQSLKILSETFLKTNGI 146
            L  +           +  +L+      +  ++   + + L++  +  + +   + TN  
Sbjct: 120 NLAQEFPEYFMAFTQNIVEFLNHSRFNEYLDKISFNFDEVLNNFTTDMVKTVKDMATNVA 179

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +    + F        LS++ +   LF+  ++G  + + +  +           I   
Sbjct: 180 QGVASGITGFLSTLTGILLSLVTVPFILFYLLKEGEKLPKFMLKVCPPRMRKEVTDIFHD 239

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           + K I S   G  ++++  G ++   + + G+   + LG +  I +++P   P+     +
Sbjct: 240 MDKQISSYIQGQILVSMCIGAMVTIGFLIIGMKYALLLGFLAMITSVVPYLGPVIAITPA 299

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           + + +  +      L +   I   I  K + P ++G  + +  +   F L+      G+ 
Sbjct: 300 VIIALVTSPLMLIKLAIVWTIVQLIEGKFISPQIMGKSLSIHPITIIFVLLTAGSLFGVP 359

Query: 327 GLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G+ +G    A+  V+        K+   +   +
Sbjct: 360 GVILGIPGYAIFKVLVTHLFKLFKQRYNRYEDD 392


>gi|327469594|gb|EGF15063.1| permease [Streptococcus sanguinis SK330]
          Length = 392

 Score = 94.1 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 57/337 (16%), Positives = 122/337 (36%), Gaps = 8/337 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP-LLFLFYY 84
           FL     PV+ A ++ +   PI       K      +A+     ++   I+  L      
Sbjct: 52  FLGVIMLPVILAGLLYYLLNPIVDWMEKHKINR--LVAITIVFVLIAFLIIWGLAVAIPS 109

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
              ++   V  V    +      R++ D+     +++   +   +  +L      +  +N
Sbjct: 110 LQHQVMAFVRNVPAYLKQAD---RFIDDVVTKHISADFKPQIEEYTSNLSSQITDW-ASN 165

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
                  +A           ++II M   LF+  RDG ++   +       F A + ++ 
Sbjct: 166 FSSRAVNWAGNLISTTSQIIVAIIIMPFILFYLLRDGKNLKGYVTQFLPTKFRASFGQVM 225

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
             +   + +   G   +AI   L+    + + G+   V LGVI  ++ ++P  G+ ++  
Sbjct: 226 TDINSQLANYVRGQVTVAIIVALMFIVFFKIIGLRYGVTLGVIAGVLNLVPYLGSFLAML 285

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
                 LI G       + +   IE  I  + + P ++G  + +  +   F L+      
Sbjct: 286 PALAIGLIAGGPVMLAKVIVVFIIEQTIEGRFVSPLVLGSQLSIHPITILFVLLTSGTMF 345

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           G+ G+F+G    A   V         ++      ++F
Sbjct: 346 GIWGVFLGIPAYASAKVAIAAIFKWYQKVSGLYEADF 382


>gi|324990909|gb|EGC22844.1| permease [Streptococcus sanguinis SK353]
          Length = 392

 Score = 94.1 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 121/337 (35%), Gaps = 8/337 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP-LLFLFYY 84
           FL     PV+ A ++ +   PI       K      +A+     ++   I+  L      
Sbjct: 52  FLGVIMLPVILAGLLYYLLNPIVDWMEKHKINR--LVAITIVFVLIAFLIIWGLAVAIPS 109

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
              ++   V  V    +      +++ D+     +++   +   +  +L      +  +N
Sbjct: 110 LQHQVMAFVRNVPAYLKQAD---KFIDDVVTKYISADFKPQIEEYTSNLSSQITDW-ASN 165

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
                  +A           ++II M   LF+  RDG ++   +       F   + ++ 
Sbjct: 166 FSSRAVNWAGNLISTTSQIVVAIIIMPFILFYLLRDGKNLKGYVTQFLPTKFRESFGQVM 225

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
             +   + +   G   +AI   L+    + + G+   V LGVI  ++ ++P  G+ ++  
Sbjct: 226 TDINSQLANYVRGQVTVAIIVALMFIVFFKIIGLRYGVTLGVIAGVLNLVPYLGSFLAML 285

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
                 LI G       + +   +E  I  + + P ++G  + +  +   F L+      
Sbjct: 286 PALAIGLIAGGPVMLAKVIVVFIVEQTIEGRFVSPLVLGSQLSIHPITILFVLLTSGTMF 345

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           G+ G+F+G    A   V         ++      ++F
Sbjct: 346 GIWGVFLGIPAYASAKVAIAAIFKWYQKVSGLYEADF 382


>gi|289664536|ref|ZP_06486117.1| permease [Xanthomonas campestris pv. vasculorum NCPPB702]
 gi|289667897|ref|ZP_06488972.1| permease [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 388

 Score = 94.1 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/330 (15%), Positives = 127/330 (38%), Gaps = 12/330 (3%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           +L  +  L     P + AL++ +   P+          S     ++  V    LF++ L+
Sbjct: 25  VLWVVSLLAPILTPFVLALLLAWLGDPLVDRIERA-GRSRNVAVMLVFVLATLLFVLALM 83

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            L      ++  L+  +       I      + IP     + +       P+ L     +
Sbjct: 84  ILVPMIERQIMTLIDALPQMRNWAIG-----TAIPWLEAKTGMQLMAWLDPERLIDWIRS 138

Query: 140 FLKTNGI--DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
             +  G     +  + SR G   + + +++  + I  F+F RD   + +++ ++    + 
Sbjct: 139 HWEQAGGAAKTLFGYVSRSGFAMVTWVINLALLPILAFYFLRDWDRLVERVAAVIPRAYI 198

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-- 255
               ++++    V+     G  ++ +  G +  +   + G+   + +G+I  +++ IP  
Sbjct: 199 GTVSRLAQESNDVLGGFIRGQFLVMLALGAIYATGMSIIGLNLGLLIGIIAGLISFIPYL 258

Query: 256 -GGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
                I    ++  +  +G ++     + +   +   +    L P +VG  I L  +   
Sbjct: 259 GATTGIVLALLAAIVQAQGLDLKLLIGVGVVFTVGQLLESYVLTPRIVGDKIGLHPVAVI 318

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           F ++ G +  G LG+ +   + A+  V+ +
Sbjct: 319 FAVMAGGQLFGFLGMLLALPVAAVANVLLR 348


>gi|153841626|ref|ZP_01993425.1| membrane protein [Vibrio parahaemolyticus AQ3810]
 gi|149745457|gb|EDM56708.1| membrane protein [Vibrio parahaemolyticus AQ3810]
          Length = 144

 Score = 94.1 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 2/137 (1%)

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGN 274
           +G  + AI +GL  G   WLAG P  +  G +    + IP  G  + +   + YL + G+
Sbjct: 1   MGSFLTAIAQGLAGGIGMWLAGFPG-LFWGTMMGFASFIPVVGTALIWIPAAAYLFLTGD 59

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
           +  A  L  W  + +  +D  LRP L+ G   +  L  FF L+GG+   GL+GL  GP++
Sbjct: 60  MTWAIFLTAWSVVIVGSIDNLLRPLLMQGSAGMNTLMIFFSLLGGLHLFGLIGLIYGPLI 119

Query: 335 MALIAVIWKESIMAIKE 351
            A+  V++       K+
Sbjct: 120 FAVTMVLFNIYEEEFKD 136


>gi|330470380|ref|YP_004408123.1| hypothetical protein VAB18032_02195 [Verrucosispora maris
           AB-18-032]
 gi|328813351|gb|AEB47523.1| hypothetical protein VAB18032_02195 [Verrucosispora maris
           AB-18-032]
          Length = 433

 Score = 94.1 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 52/315 (16%), Positives = 107/315 (33%), Gaps = 14/315 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P+  A+++     P     +  +    +    +  V+ +   +  L  +    +  + 
Sbjct: 111 IIPLAVAMLLSALLAPAVGWLLRARLP-KSLATAVVLVAGLAAVVGTLTLVVNEFIKGVP 169

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           EL +K   ++Q    +  WL   P  +  ++L        Q +   +E F          
Sbjct: 170 ELAAK---SSQGLQQIQDWLKTGPLHLSDNDLDRYLEEAQQWVNNNTEQFTSG------- 219

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
             A        +     I ++ A FFF RDG  I + +  L             R     
Sbjct: 220 --ALSTATTLAEVLTGTILVLFAAFFFLRDGNMIWRFVVRLLPVAARWKVDDAGRASWAT 277

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYL 269
           + +      ++A  + + +G    +  +P    L  +  + A IP  GA +S     +  
Sbjct: 278 LVAYVRATVLVAFIDAVGIGIFLVIFDIPFAFPLAALVFLGAFIPIIGATLSGGVAVLVA 337

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           L+      A  +         +    L+P ++G  + +  L    GL  GV   G+ G  
Sbjct: 338 LVDSGPVTALIILGVVIGVQQVEGHILQPLIMGRAVAIHPLAVIIGLAAGVVLAGITGAL 397

Query: 330 IGPVLMALIAVIWKE 344
           +   L+A++    + 
Sbjct: 398 VAVPLIAVLNTAVRR 412


>gi|262195606|ref|YP_003266815.1| hypothetical protein Hoch_2385 [Haliangium ochraceum DSM 14365]
 gi|262078953|gb|ACY14922.1| protein of unknown function UPF0118 [Haliangium ochraceum DSM
           14365]
          Length = 542

 Score = 94.1 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 78/205 (38%), Gaps = 5/205 (2%)

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              I  +  F     +       +   +++   F   D   +     SL    +   +  
Sbjct: 300 QTSIGDLVSFGQSLMIGLARSVFTFFLVMMVGAFILLDLEKLHGFARSLIPMAYRDDFDL 359

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
           I++ + + +     G  II +  G++     ++  V   + L ++  IM+++P  G+ +S
Sbjct: 360 IAKGINRGLSGVIRGQLIICLVNGVLTYIGLFIFNVEYALVLALVAGIMSVVPIFGSILS 419

Query: 262 FTAVSIYLLIKG----NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
              V I  L  G    ++  A   F W      +    L P ++    ++  +   F L+
Sbjct: 420 TIPVVIVALFSGEGGLDVARALAAFAWIVGIHLLEANVLDPKIMSSAARIHPVLVIFALI 479

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIW 342
            G    GL+G  +   + +++ V++
Sbjct: 480 VGEHYFGLVGAILAVPVTSMVQVLF 504


>gi|283768904|ref|ZP_06341814.1| putative membrane protein [Bulleidia extructa W1219]
 gi|283104457|gb|EFC05831.1| putative membrane protein [Bulleidia extructa W1219]
          Length = 382

 Score = 93.7 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 54/336 (16%), Positives = 119/336 (35%), Gaps = 18/336 (5%)

Query: 31  FAPVLSALIIGFTSWPI-----YSSFISKKEE---SSTFLAVIATVSVMCLFIVPLLFLF 82
             P +   +  F   PI     Y+   S          F ++++ +  + + +     L 
Sbjct: 48  LMPFVFGFVFAFLLNPIRKIVEYNVLKSVHWSARIKRVFASLVSILVFLLVLVAFFAILI 107

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                 ++   S      Q G    R+L  +P  +  +E+W       Q+     + +L 
Sbjct: 108 PQLYASVQTFSSAFPRYMQSGY---RYLESLP--LNLNEVWKYLNEALQTFVQSLQRWLT 162

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK- 201
            N    + +      + F    L     +I  F+   D   +  QL  +   + P     
Sbjct: 163 LNSAGGLSQLYYS-AVSFARGILDFFIGVIIAFYILLDEEKLKSQLRKVVFSVIPFKRAT 221

Query: 202 ---KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              K+ R++     +   G  + ++  G++      + G+P    + VI  +  MIP   
Sbjct: 222 SFFKVCRMIIDNFNNFIAGKALDSLIIGIICYVGCLILGIPYAPLVSVIVGVTNMIPVFG 281

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P         ++   +      L ++  +   +    + P ++G  + LP +   F ++ 
Sbjct: 282 PFIGGIPLTIMVALIHPLRGLTLGIFIFVLQQVDGNIIGPRILGSAVGLPSIWVMFSIIA 341

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G    G++G+ IG  L ++I ++ +       E K+
Sbjct: 342 GGALFGIVGMVIGVPLFSVIYILVRNKTNERLEEKK 377


>gi|328956583|ref|YP_004373969.1| hypothetical protein CAR_c02020 [Carnobacterium sp. 17-4]
 gi|328672907|gb|AEB28953.1| conserved hypothetical protein [Carnobacterium sp. 17-4]
          Length = 369

 Score = 93.7 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 52/332 (15%), Positives = 121/332 (36%), Gaps = 9/332 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
                 AP++ A I  +   PI       K +   +  +I  ++++ +    +   F   
Sbjct: 22  IFSTLVAPLILAFIFYYLLNPIVDWMERHKIKR-IWGVLILFIAIIGILAGLVALAFPPI 80

Query: 86  MLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
             ++  LV+      +  GI +  W+++ P     SE          ++  +  ++  T 
Sbjct: 81  QEQITSLVNNFPSYVDSMGITILSWVANTPLESAVSEFIEWLNGWVSNIPSVVVSYFDTA 140

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
                  F++   ++ +     II      FF  +D       +  +    F    K I 
Sbjct: 141 VSGLTSVFSTVSNVVVVIVTFPIIV-----FFLLKDDEKFFNYVLKIIPPKFRKDTKNIF 195

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
             + + + S   G  +I++  G+++   + + G+     L ++    +++P  GA ++  
Sbjct: 196 ATINEQVGSYIKGQLLISLSLGIMMFIGFTVIGLEYSGILAIVATFTSIVPYIGAALAMI 255

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
              I      + F    L +   +  F+    + P ++G  + +  L     L+     +
Sbjct: 256 PAVIVAFTI-SWFMVLKLIIVWVVVQFVDGNLIEPNIMGKNLNVHPLTIIIVLLVLGDLL 314

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G +GL +G  + A+  V+        K+   K
Sbjct: 315 GFVGLILGVPIYAISRVLVTFVFRKFKQRYNK 346


>gi|147919164|ref|YP_687103.1| hypothetical protein RCIX2736 [uncultured methanogenic archaeon
           RC-I]
 gi|110622499|emb|CAJ37777.1| conserved hypothetical protein [uncultured methanogenic archaeon
           RC-I]
          Length = 349

 Score = 93.7 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 53/340 (15%), Positives = 119/340 (35%), Gaps = 19/340 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +++ I+    +F +     V+  +   + + PI        + +               
Sbjct: 25  IIVLLIVAAVAFFFRPLLDGVVFGVFFAYVTRPIKDFLRKYTKYAPMLA--------TFC 76

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            ++P++ +F +  +E++  +S         +      + +      +EL  +      ++
Sbjct: 77  ILLPVIAIFSFAAIELRNQISWFSDHGNEALAQVN--AALEALGVPAELVVQLNDVLMNI 134

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
              +  F  T  I          G   L         I   ++  +DG  I   + SL  
Sbjct: 135 SQYAFAFAATVPIRETFTSLLLLGTNAL-------VSIFVCYYLLKDGDRIISTIMSLTP 187

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
             F       +    +++   ++G    A+    +    ++L  VP          I AM
Sbjct: 188 ARFQPAVSFFTVEADRILFGIYIGTFYTALFIATMSAVLFFLFSVPYLALCTAFVFIAAM 247

Query: 254 IPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIKLPFLP 311
           +P  + +  F  V+ Y+ I  +       FL   I +++  D  +RP+L+     +  L 
Sbjct: 248 VPILSGMMVFIPVAAYMYIYRDPAIGILFFLSAIIFVYLPPDFLIRPYLINRASNIHPLL 307

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
                +GG    GL G F  P+ + L+  +++  +   +E
Sbjct: 308 IIMSFIGGGLAGGLSGFFAAPLAVGLLIAVYRTYLKYGEE 347


>gi|257870978|ref|ZP_05650631.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
 gi|257805142|gb|EEV33964.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
          Length = 387

 Score = 93.7 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/317 (14%), Positives = 109/317 (34%), Gaps = 5/317 (1%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P++ A I+ +   P       K      +      + V+ L +  ++ +      +    
Sbjct: 58  PIILAGILYYLMNPAVDYLERK-GIKRIYSIFGLFILVIGLIVWGVVVIVPKIQEQSMSF 116

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
           V  +         +   +++I      S++  +  +  + L       ++      I   
Sbjct: 117 VENLPGYLDI---IENKVNEILSDPIFSQVQDQLEASNEKLIASMTDIIQNLSRSTIQNI 173

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
            S FG +     L++I M   LF+  +DG  ++                 + + +   + 
Sbjct: 174 GSFFGAVAT-VVLAVITMPFILFYLLKDGRQLAPYFVKFLPTKMRKPSLTVLKEMNDQVS 232

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
           S   G   +A    ++    + L G+   + LG+    + +IP          +++L I 
Sbjct: 233 SYIRGQLTVAFAVAIMFMVGFSLIGLDYAITLGIAAGFLNLIPYLGSFLAMVPAVFLGIV 292

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
           G       + +   IE  I  + + P ++G  + +  +     L+   +  GL+G+ +G 
Sbjct: 293 GGPVLLVKVLVVFVIEQTIEGRLISPLVLGNELSIHPVTILLVLLTSGKLFGLVGVILGI 352

Query: 333 VLMALIAVIWKESIMAI 349
            + A   VI        
Sbjct: 353 PVYAAAKVIITHIFEWY 369


>gi|255022095|ref|ZP_05294099.1| Putative permease often clustered with de novo purine synthesis
           [Acidithiobacillus caldus ATCC 51756]
 gi|254968453|gb|EET26011.1| Putative permease often clustered with de novo purine synthesis
           [Acidithiobacillus caldus ATCC 51756]
          Length = 372

 Score = 93.7 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 50/347 (14%), Positives = 124/347 (35%), Gaps = 13/347 (3%)

Query: 11  IMRWMIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           + R  ++  ++V+ Y L        P L A I+ +   P+ S                 T
Sbjct: 11  LQRLYVLAALVVAAYLLYRLGAVLTPFLIAGILAYLGNPLVSRLQRWGLSR--------T 62

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V    +F++ LL +       +  +  + +L   +       L        ++ L  +  
Sbjct: 63  VGTTLVFVLVLLVVAGIVTALLPAIRHQALLFLDYTRQYAELLQRQIVPELSARLGIQLD 122

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           S   +    +      + +    R A       L   L I+ + +  F+  RD   + ++
Sbjct: 123 SQTITHYASANAQKLADWLGKSLRIAVSSSSGILATLLDIVLIPVLGFYLLRDWPQLLER 182

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  L         + ++R    ++ +   G  ++ +  G        + G+ + + +G++
Sbjct: 183 IRELIPRRRLPTVELLARDANTMLMAFLRGQILVMLALGTSYAIGLSIVGLQTAILIGLL 242

Query: 248 TAIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
              ++ +P    IS  +++   +    G       +++   I   +      P+LVG  I
Sbjct: 243 AGFLSFVPYLGVISGISMATLAMYIQTGAFLPMVGVWVVFGIGQILESMVYTPYLVGERI 302

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            L  +   F ++ G    G +GL +   + A++  + + +     ++
Sbjct: 303 GLHPVLVIFAVLAGGELFGFVGLLLALPVTAVLIALLRHAQRWYLDS 349


>gi|323351829|ref|ZP_08087480.1| membrane protein [Streptococcus sanguinis VMC66]
 gi|322121886|gb|EFX93618.1| membrane protein [Streptococcus sanguinis VMC66]
 gi|324993171|gb|EGC25091.1| permease [Streptococcus sanguinis SK405]
 gi|324995526|gb|EGC27438.1| permease [Streptococcus sanguinis SK678]
 gi|325696807|gb|EGD38695.1| permease [Streptococcus sanguinis SK160]
 gi|327461441|gb|EGF07772.1| permease [Streptococcus sanguinis SK1]
 gi|327473746|gb|EGF19164.1| permease [Streptococcus sanguinis SK408]
          Length = 392

 Score = 93.7 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/313 (16%), Positives = 115/313 (36%), Gaps = 8/313 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP-LLFLFYY 84
           FL     PV+ A ++ +   PI       K      +A+     ++   I+  L      
Sbjct: 52  FLGVIMLPVILAGLLYYLLNPIVDWMEKHKINR--LVAITIVFVLIAFLIIWGLAVAIPS 109

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
              ++   V  V    +      +++ D+     +++   +   +  +L      +  +N
Sbjct: 110 LQHQVMAFVRNVPAYLKQAD---KFIDDVVTKYISADFKPQIEEYTSNLSSQITDW-ASN 165

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
                  +A           ++II M   LF+  RDG ++   +       F   + ++ 
Sbjct: 166 FSSRAVNWAGNLISTTSQIIVAIIIMPFILFYLLRDGKNLKGYVTQFLPTKFRESFGQVM 225

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
             +   + +   G   +AI   L+    + + G+   V LGVI  ++ ++P  G+ ++  
Sbjct: 226 TDINSQLANYVRGQVTVAIIVALMFIVFFKIIGLRYGVTLGVIAGVLNLVPYLGSFLAML 285

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
                 LI G       + +   +E  I  + + P ++G  + +  +   F L+      
Sbjct: 286 PALAIGLIAGGPVMLAKVIVVFIVEQTIEGRFVSPLVLGSQLSIHPITILFVLLTSGTMF 345

Query: 324 GLLGLFIGPVLMA 336
           G+ G+F+G    A
Sbjct: 346 GIWGVFLGIPAYA 358


>gi|150390221|ref|YP_001320270.1| hypothetical protein Amet_2457 [Alkaliphilus metalliredigens QYMF]
 gi|149950083|gb|ABR48611.1| protein of unknown function UPF0118 [Alkaliphilus metalliredigens
           QYMF]
          Length = 411

 Score = 93.7 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 122/326 (37%), Gaps = 4/326 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L    +P + A++I +   P+      K      +  ++  + + C+ ++  L L    
Sbjct: 88  LLMEILSPFIIAIVIAYILNPLIHYLQVK-GIDRMWGVLLVYLFISCMILILSLTLVPRI 146

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             E++ L++ +   +         L  +        L T+  S  + L++  +   +   
Sbjct: 147 TEEVRNLMAFLPQYSNDSYEHLHNL-YLRYNQNLESLPTEFESVKELLRLNIDRIQEIVF 205

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              I    +   +      ++++ + I +F+F +D     + +  L           I++
Sbjct: 206 G--IASSFTSTLLGLFSRLVNLVLIPILVFYFLKDAKGFKKAIILLIPRYLRKNVMHIAK 263

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            V  V+     G  I+A   G++   +  +  V   V +G+I  I  ++P   P+     
Sbjct: 264 DVDSVLGGFIRGQLIVAGFVGILTMISLLVLRVEFAVLVGLIAGIANIVPYFGPVVGIVP 323

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            +   +      A  + +   +   I    L P +VG  + L  +     L+ G R +G+
Sbjct: 324 GVLFALLDGPIKAIWVVVVFTVIQQIESAILAPKIVGKSVGLHPVLVILALLVGGRFLGI 383

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKE 351
           +GL I   +   I V+ K  I  + +
Sbjct: 384 VGLLIAVPVAGTIKVLGKHLISHVTK 409


>gi|255028980|ref|ZP_05300931.1| hypothetical protein LmonL_07086 [Listeria monocytogenes LO28]
          Length = 354

 Score = 93.7 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 54/332 (16%), Positives = 118/332 (35%), Gaps = 14/332 (4%)

Query: 17  MFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           MF++L   Y            F P+L A  + +   P+      +K        ++  ++
Sbjct: 1   MFVLLQMKYIFSPIGIIVSTLFMPILVAGFLFYLFNPLVLFLEKRKVPR-LLSVIVIFIA 59

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + L ++ ++ L      ++ EL   +    Q      +WL  +      S L    +  
Sbjct: 60  FITLVVLAVMQLGPTLADQVAELAKAIPGYWQ---DFEKWLQGL---SNNSALKDIDMKQ 113

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                 +S   + +  +D +             + + ++ +   +F+ ++DG    +   
Sbjct: 114 ELEKLNISLPKIMSVVVDGVASSFGAIVSFVSSFVMILVTVPFIVFYMFKDGHKFVESSG 173

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                   +  K+I + + K I +      I  +  GL     Y + G P  +  G I  
Sbjct: 174 KFFPAGIRSEAKQIIKEMNKTISTYISSQAIDCMFVGLFTFIGYLIIGQPYALLFGFIAG 233

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
              +IP   P    A ++ + +  +   A  + +   I   I    L P+++G  + +  
Sbjct: 234 ATNIIPYLGPFIGAAPAVIVALFTSPVQALLVIVVVTIVQQIDSNLLSPYIMGKSLSIHP 293

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           L     L+      G+ G+ +G  L A++  I
Sbjct: 294 LTIIIILIVAGNLAGIFGMILGVPLYAVVKTI 325


>gi|16799980|ref|NP_470248.1| hypothetical protein lin0908 [Listeria innocua Clip11262]
 gi|16413357|emb|CAC96140.1| lin0908 [Listeria innocua Clip11262]
 gi|313619742|gb|EFR91354.1| permease [Listeria innocua FSL S4-378]
 gi|313624438|gb|EFR94449.1| permease [Listeria innocua FSL J1-023]
          Length = 378

 Score = 93.7 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 55/340 (16%), Positives = 121/340 (35%), Gaps = 14/340 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           + +    ++FI+L   Y            F P+L A  + +   P+      +K      
Sbjct: 17  EILAVVAVLFILLQMKYIFSPIGIIVSTLFMPILVAGFLFYLFNPLVLFLEKRKVPR-LL 75

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++  ++ + L ++ ++ L      ++ EL   +    Q      +WL  +      S 
Sbjct: 76  SVILIFIAFIALVVLAVMQLGPTLADQVAELAKAIPGYWQ---DFEKWLQSL---SNNSA 129

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L    +    S   +S   + +  +D +             + + ++ +   +F+ ++DG
Sbjct: 130 LKDIDMKQELSKLNISLPKIMSVVVDGVASSFGAIISFVSGFVMILVTVPFIVFYMFKDG 189

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               +              K+I + + K I +      I  +  GL     Y + G P  
Sbjct: 190 HKFVESSGKFFPAGIRTEAKQIIKEMNKTISTYISSQAIDCMFVGLFTFIGYLIIGQPYA 249

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +  G I     +IP   P    A ++ + +  +   A  + +   I   I    L P+++
Sbjct: 250 LLFGFIAGATNIIPYLGPFLGAAPAVIVALFTSPVQALLVIVVVTIVQQIDSNLLSPYIM 309

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           G  + +  L     L+      G+ G+ +G  L A++  I
Sbjct: 310 GKSLSIHPLTIIIILIVAGNLAGIFGMILGVPLYAVVKTI 349


>gi|56807948|ref|ZP_00365766.1| COG0628: Predicted permease [Streptococcus pyogenes M49 591]
          Length = 393

 Score = 93.7 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 60/337 (17%), Positives = 124/337 (36%), Gaps = 7/337 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+ +  + F      P++ + I+ + + P+    I+    + T    I    +  LF+
Sbjct: 43  ISFLFMPVISFFAVIMLPLVISTILYYLTKPLVD-LINHLGPNRTTSIFIVFGLITLLFV 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +         ++   +  +             L +    +         L+H     +
Sbjct: 102 WAISGFVPMVQTQLTSFIEDLPKYVGKVNEEANKLLENEWLVSYKPQLQAMLTHTSQKAL 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   N ID+   FA     I     ++II     LF+F RD   +   L ++    
Sbjct: 162 DYAQSFSKNAIDWAGNFAGAIARIT----VAIIISPFILFYFLRDSGHMKNGLVNVLPLK 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   + K +     G   +AI  G +    + L G+   +  G+I   + MIP
Sbjct: 218 LRVPMVRVLGDINKQLSGYVQGQVTVAIVVGFMFSIMFSLVGLKYAITFGIIAGFLNMIP 277

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G+ ++   V I  +++G       L ++  IE  I  + + P ++G  + +  +   F
Sbjct: 278 YLGSFLAMIPVVIMAMVQGPFMLFKVLVIF-MIEQTIEGRFVAPLVLGNKLSIHPITIMF 336

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            L+      G+ G+F+   + A + V+ KE     K+
Sbjct: 337 LLLTAGSMFGVWGVFLVIPIYASVKVVIKELFDWYKK 373


>gi|315925492|ref|ZP_07921702.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315621033|gb|EFV01004.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 510

 Score = 93.7 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 49/349 (14%), Positives = 101/349 (28%), Gaps = 29/349 (8%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISK-------KEES--------------STFLAVIATVS 69
             P+   +II F   P+ +    +       +                  +   +I    
Sbjct: 100 MMPITFGVIIAFIMTPVLNFVEGRWLVPLFERRGRDVAGPGFTKDRRRMRSLSVLITMCF 159

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM-----WASELWT 124
           ++       + +    +  + +  ++V     +   V  W+S +PG       W +  W 
Sbjct: 160 LLLCLYALTMIVVPQLLASLNQFFTQVPAYVDN---VNTWISRLPGNQPMLRKWLNAAWN 216

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
              +    L            +  +         +F +  + +I  I  L          
Sbjct: 217 TSSAQLTKLIKTRVLPNMGTILQTLTTQLVGAVRVFFNLIVGLIVAIYLLASKETFCAQG 276

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +   +L             R +         G  I +   G++      + G P  V +
Sbjct: 277 KKIAYALFRPNTANEVVGAFRFINATFNGFISGKIIDSAIIGVLCFLGDSIIGTPYPVLV 336

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            VI  +  +IP   P     +   L++      A    ++  I        L P ++G  
Sbjct: 337 SVIVGVTNIIPFFGPYIGAIIGGVLILLIQPLQALYFVIFVIILQQFDGNVLGPKILGDS 396

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             L      F ++      G+LG  IG  L A+I    +  I    + +
Sbjct: 397 TGLSSFWVIFAIMIFGGLFGVLGWVIGVPLFAVIYAFARRVINHFLKKR 445


>gi|258511994|ref|YP_003185428.1| hypothetical protein Aaci_2027 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478720|gb|ACV59039.1| protein of unknown function UPF0118 [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 354

 Score = 93.7 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 49/324 (15%), Positives = 109/324 (33%), Gaps = 12/324 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L   F   L++LII +   P       ++   S      A + V  +    L  +    
Sbjct: 36  VLSSLFYTFLASLIITYILQPAVDVLHRRRVPRSA-----AILIVYAVIAAILAVVVLNL 90

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +  +   ++++  +      +P   +++   +        +L +     I +      + 
Sbjct: 91  IPVISRQIAQLSSS------LPAITAELSRWIDMINSRKTYLPNAVRTGIENALNQLEHR 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           ++  P          L+       +   +F+  +D  +I + +  +    +    + + R
Sbjct: 145 VEVAPTGLFSVVTSTLNAIFMAFVVPFLVFYMLKDAKAIGRGMVRMAPAKYKHRVRLVLR 204

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS-FTA 264
            +   +     G  +I +  GL+    Y +  +P  + LG       +IP   PI     
Sbjct: 205 AIDDTLGGYVRGQFLIMLAVGLLSFIGYLIIRLPYALLLGAFLGFADIIPYLGPIIGIAP 264

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             I  L          + +       I    L P ++G  + L  +     L+ G    G
Sbjct: 265 AVIIALTTSGWPMLVKVVIVNIAVQQIEGNILSPQIMGRTLHLHPMAIVAALIVGGEAGG 324

Query: 325 LLGLFIGPVLMALIAVIWKESIMA 348
           +LGL +    +A+  V+W +   A
Sbjct: 325 ILGLILAVPALAVCKVVWTQWREA 348


>gi|315281596|ref|ZP_07870191.1| permease [Listeria marthii FSL S4-120]
 gi|313614759|gb|EFR88308.1| permease [Listeria marthii FSL S4-120]
          Length = 378

 Score = 93.7 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 120/340 (35%), Gaps = 14/340 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           + +    I+F++L   Y            F P+L A  + +   P+      +K      
Sbjct: 17  EILAVVAILFVLLQMKYIFSPVGIIVSTLFMPILVAGFLFYLFNPLVLFLEKRKVPR-LL 75

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++  ++ + L ++ ++ L      ++ EL   +    Q      +  S+ P       
Sbjct: 76  SVILIFIAFIVLVVLAVMQLGPTLADQVTELAKAIPGYWQDFEKWLQSFSNNPAFQGVD- 134

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                +    S   +S   L +  +D +             + + ++ +   +F+ ++DG
Sbjct: 135 -----IKEELSKLNISLPKLMSVVVDGVASSFGAIISFVSGFVMILVTVPFIVFYMFKDG 189

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               +           +  K+I + + K I +      I  +  GL     Y + G P  
Sbjct: 190 HKFVESSGKFFPAGIRSEAKQIIKEMNKTISTYISSQAIDCMFVGLFTFIGYLIIGQPYA 249

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +  G I     +IP   P    A ++ + +  +   A  + +   I   I    L P+++
Sbjct: 250 LLFGFIAGATNIIPYLGPFLGAAPAVIVALFTSPVQALLVIVVVTIVQQIDSNLLSPYIM 309

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           G  + +  L     L+      G+ G+ +G  L A++  I
Sbjct: 310 GKSLSIHPLTIIIILIVAGNLAGIFGMILGVPLYAVVKTI 349


>gi|311032815|ref|ZP_07710905.1| hypothetical protein Bm3-1_20134 [Bacillus sp. m3-13]
          Length = 355

 Score = 93.7 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/331 (15%), Positives = 127/331 (38%), Gaps = 24/331 (7%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           FI+   + F+   F P+L A  + +   P+ +     K    T   ++   +++      
Sbjct: 29  FIVNPIISFITTLFFPILFAGFLFYILKPLVNFLAKSKYVPRTLAIILVFSAII------ 82

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
                         ++    +  +    V ++  D P  +  +E  TK L    +  ++S
Sbjct: 83  -----------GGAVLGGFSVGGKIEEQVVQFAEDFPAFLEKNEEQTKELMDDNNFGLIS 131

Query: 138 ETFLKTNGIDFIPRFASRFGMI-------FLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
               K  G+ F+   + R G           ++   ++ +   LF+F +DG  +   +  
Sbjct: 132 YEEAKKRGLAFLKEQSQRIGENVSSIISSITNFVTILVVVPFILFYFLKDGHKLLPFILK 191

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +  +      K++   + K + +   G  I+A+  G ++   Y + G+   + L +   I
Sbjct: 192 MLPNKHHDEGKRLLTDIDKTLSTYIGGQMIVALVNGFLMYIGYLIIGLDYALVLALFIVI 251

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            A++P   P      ++ + +  + F    + +  AI   I    + P ++G  + +  L
Sbjct: 252 TAVVPIIGPALGVLPAVIIGLMTDPFMVVKILILLAIVQQIEGNLVSPQIIGNKLSIHPL 311

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                L+   +  G +G+ +   + +++ V+
Sbjct: 312 TVILLLLAAGKLYGFIGILLAVPVYSVLKVV 342


>gi|240850720|ref|YP_002972120.1| permease protein [Bartonella grahamii as4aup]
 gi|240267843|gb|ACS51431.1| permease protein [Bartonella grahamii as4aup]
          Length = 403

 Score = 93.7 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/320 (14%), Positives = 107/320 (33%), Gaps = 15/320 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +   ++ ++       P ++ +++ +   PI    + +      F  V+ T+ ++  F+ 
Sbjct: 56  LIFFVLFMFVFGSILLPFVAGIVLAYFLNPIVQ-LLERFGIRRVFGTVLITLFIVITFVA 114

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L+ L      ++++ +S  +    +       +           +     S P  L+  
Sbjct: 115 ALVILIPVISWQIQQFMSDGLPVYINR------IQTFFVEHDFDWIRRYFGSDPNELRNN 168

Query: 137 SETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            + FL   G DFI    +     G   ++     +   +  F+   D   +   +DSL  
Sbjct: 169 IKGFLGE-GSDFITSLLNSLLKSGKSIVNIVSLFVVAPVVAFYMLLDWPRMVTAIDSLIP 227

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  + I   + + I     G   + +  G        +AG+   + +G+   +++ 
Sbjct: 228 RDHLETVRSIFHEMDRAIAGFVRGQGTVCLILGGYYAIGLTIAGLNFGLLIGMFIGLISF 287

Query: 254 IP----GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +P        +    ++       N      +     I  FI    L+P LVG  + L  
Sbjct: 288 VPYIGTMSGLVLSVGIAWVQFYPNNWGGIIVVMALFLIGQFIEGYILQPKLVGSSVGLHP 347

Query: 310 LPTFFGLVGGVRTMGLLGLF 329
           +   F L       G  G+ 
Sbjct: 348 VWLMFSLFAFSSLFGFTGML 367


>gi|302187851|ref|ZP_07264524.1| hypothetical protein Psyrps6_15958 [Pseudomonas syringae pv.
           syringae 642]
          Length = 357

 Score = 93.7 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 55/343 (16%), Positives = 132/343 (38%), Gaps = 14/343 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +++  +  L     P L AL++ +   P+                   T+SV+ +F +
Sbjct: 13  LALLVAFVVLLHPILTPFLVALLLAYMGDPLVDRLERAGLSR--------TLSVVVVFGL 64

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLK 134
             L L    ++ +  L  ++    +    +  WL    +P       L        +   
Sbjct: 65  FTLVLMALLLVLVPMLAKQLFRLYELAPQILDWLQHAALPWVQAKFGLADGFWKFDKIKA 124

Query: 135 ILSETFLKT-NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            +SE   +  + +  +   A+   +  + +  +++ + +  F+  RD   ++ ++  L  
Sbjct: 125 AISEHMGQAGDIVSIVLSQATASSLALIGWLTNLVLIPVVCFYLLRDWDIMTGKIRGLLP 184

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
               A   K++    +V+ +   G  ++ +G G++  +   L G+   + +GVI  + A+
Sbjct: 185 RQREAQIVKLAGECHEVLGAFIRGQLLVMVGLGVIYAAGLMLVGLELGLLIGVIAGLAAI 244

Query: 254 IPGGAPISFTA---VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +P    +       V+      G+++    +     I   +    L P LVG  I L  +
Sbjct: 245 VPYMGFVIGIGSALVAGLFQFGGDLYPMMGIVAGFMIGQALEGMVLTPLLVGDRIGLHPV 304

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              F ++ G    G  G+ +   + A+I V+ +      K+++
Sbjct: 305 AVIFAILAGGELFGFTGILLALPVAAVIMVLVRHMHDLYKDSE 347


>gi|16799668|ref|NP_469936.1| hypothetical protein lin0593 [Listeria innocua Clip11262]
 gi|16413033|emb|CAC95825.1| lin0593 [Listeria innocua Clip11262]
 gi|313620258|gb|EFR91707.1| YubA [Listeria innocua FSL S4-378]
 gi|313624816|gb|EFR94748.1| YubA [Listeria innocua FSL J1-023]
          Length = 389

 Score = 93.7 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 125/336 (37%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI    +  LK   AP++ A I  +   PI      KK +   +   +  + ++ L I
Sbjct: 37  IAFIFDPLMVILKTVAAPIILAGISYYLFNPIIDWLEKKKWKR-GWAIALLYLVIIGLII 95

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +   F+      ++  L                  S         ++  K  ++   +  
Sbjct: 96  LLFSFVIPAVKDQIVSLFKSFPGYWDQITQKFDEFSR---SSLFDQIKDKLSTNMSDIMK 152

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   +     I    S  G +  +  L+I+   + LF+  +DG  +   L  +    
Sbjct: 153 TLSTKGTSVINSAITSIGSIVGTVT-EVVLAIVTTPLVLFYLLKDGKKLPDFLLKMLPVN 211

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
             A+ +++       I S   G  I+++  G++L   Y + G+P  + L +I A  +++P
Sbjct: 212 GRAHTRQVLGEANHQISSYIRGQIIVSLCIGILLFIGYLIIGLPYALTLAIIAACTSIVP 271

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P      +I + I  + +    L +   +   +  K + P ++G  +K+  +   F 
Sbjct: 272 YLGPAIAITPAIIIAIVTSPWLLIKLIIVWCVVQLLEGKFISPQVMGKTLKVHPITILFV 331

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           ++      G+LG+       A++ V+     +  K 
Sbjct: 332 ILVAGNLFGILGVIFAVPGYAVLKVVVTHVFIWFKR 367


>gi|325688460|gb|EGD30478.1| toxin secretion/phage lysis holin subfamily [Streptococcus
           sanguinis SK72]
          Length = 360

 Score = 93.7 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 65/342 (19%), Positives = 124/342 (36%), Gaps = 17/342 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS---TFLAVIATVSVMCLFIV 76
           I   L  L   F+P++   ++ F              +          +A +  + + ++
Sbjct: 27  IWSGLQSLTSVFSPIILGGVLAFIFNVPMKKLEDFLGKCRVPQKLQRGLALILEVLILVL 86

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            +  +    +  +   V+++        P V +WL     G+ +S          Q+   
Sbjct: 87  IMTGIVSIVVPTLTTAVNQLSATIGKVAPQVAKWLQQ--SGLLSSSQLKDLTKQLQNSD- 143

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                +    I  +         IF ++  S+I  I  +F F      +      L + L
Sbjct: 144 -----IVNRAISLLGSLTGNISAIFGNFF-SVIMSIFLMFAFLSSKEHLQTITSRLLQVL 197

Query: 196 FPAYWKKISRIVPKVIRST----FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
            P    K    V  VI  T     +G  I A+  G+++  AY L G+P     GV+  ++
Sbjct: 198 LPEKAVKRLSYVGSVIVETYDKFLMGQMIEAVIVGVLVFIAYSLTGLPYAALTGVLAGVL 257

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           + IP   P S  A+    +   + + A        +   I    + P +VG  + LP L 
Sbjct: 258 SFIPYIGPFSACALGAIFIFTDSPWKALLSIAVFQVVQLIEGNVIYPRVVGQSVGLPTLF 317

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           T    + G    GL+G+     + A+I  + +E ++  +E K
Sbjct: 318 TLAAALIGGNLFGLVGMIFFTPIFAVIYRLVREFVVEKEEKK 359


>gi|315281204|ref|ZP_07869881.1| YubA [Listeria marthii FSL S4-120]
 gi|313615146|gb|EFR88614.1| YubA [Listeria marthii FSL S4-120]
          Length = 389

 Score = 93.7 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 133/364 (36%), Gaps = 19/364 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFL--------------KGFFAPVLSALIIGFTSWPI 47
           ++  +  + ++  +I  ++ + +Y L              K   AP++ A I  +   PI
Sbjct: 9   KQFFIENKFVLGLLIFLLVALDIYVLTKISFIFDPLMVILKTVAAPIILAGISYYLFNPI 68

Query: 48  YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
                  K +   +   +  + ++ L I+   F+      ++  L               
Sbjct: 69  IDWLEKHKWKR-GWAIALLYLVIIGLIILLFSFVIPAVKDQIVSLFKSFPGYWDQITQKF 127

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
              S         ++  K  ++   +     T   +     I    S  G +  +  L+I
Sbjct: 128 DEFSR---SSLFDQIKDKLNTNMSDIMKTVSTKGTSVINSAISSIGSIVGTVT-EVILAI 183

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           +   + LF+  +DG  +   L  +      A+ +++       I S   G  I+++  G+
Sbjct: 184 VTTPLVLFYLLKDGKKLPDFLLKMLPVNGRAHTRQVLGEANHQISSYIRGQIIVSLCIGI 243

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
           +L   Y + G+P  + L +I A  +++P   P      +I + I  + +    L +   +
Sbjct: 244 LLFIGYLIIGLPYALTLAIIAACTSIVPYLGPAIAITPAIIIAIVTSPWLLIKLIIVWCV 303

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              +  K + P ++G  +K+  +   F ++      G+LG+       A++ VI     +
Sbjct: 304 VQLLEGKFISPQVMGKTLKVHPITILFVILVAGNLFGILGVIFAVPGYAVLKVIVTHVFI 363

Query: 348 AIKE 351
             K 
Sbjct: 364 WFKR 367


>gi|157693536|ref|YP_001487998.1| hypothetical protein BPUM_2783 [Bacillus pumilus SAFR-032]
 gi|157682294|gb|ABV63438.1| hypothetical membrane protein [Bacillus pumilus SAFR-032]
          Length = 380

 Score = 93.7 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 50/333 (15%), Positives = 123/333 (36%), Gaps = 5/333 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           FI    +  +K    P++   ++ +   PI +  + +      F  ++  + ++ +  V 
Sbjct: 42  FIFTPLIVLVKTIALPIILTGVVYYLLNPIVN-LLERFRVKRIFSILLLYIVIIGMITVT 100

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           ++ +  +   +M  L   +           R L+    G        K+++   S  +  
Sbjct: 101 IVSIIPFLQAQMMSLFHNLPKYVDTVEDQIRQLT----GSNFITQAQKNMNFNVSELVSK 156

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            +   T  ++        F     +  +SI+ +   LF+  +DG  +         + F 
Sbjct: 157 ASSQATKILESTFTGVGTFLGALTEIIISIVTVPFILFYLLKDGKKLPDYFLKFIPNKFR 216

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
            +   +   +   + S  LG  I++   G++L   Y + G+   + L +I A  +++P  
Sbjct: 217 EHTHIVLHEMNHRLSSYILGQIIVSFCIGVLLLIGYLIIGLDYALLLAIIAACTSVVPYL 276

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P      +I + +  +      L +   +   I  K + P ++G  + +  +   F L+
Sbjct: 277 GPTIAITPAIVIALVTSPVMLLKLIIVWTVVQLIEGKFISPQVMGKNLHIHPITIIFVLL 336

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
              +   ++G+ +     A++ VI        K
Sbjct: 337 TAGKLFSVVGIIVAIPTYAVLKVITTHLFDWFK 369


>gi|223984123|ref|ZP_03634275.1| hypothetical protein HOLDEFILI_01567 [Holdemania filiformis DSM
           12042]
 gi|223963917|gb|EEF68277.1| hypothetical protein HOLDEFILI_01567 [Holdemania filiformis DSM
           12042]
          Length = 382

 Score = 93.7 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 130/336 (38%), Gaps = 1/336 (0%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF-LAVIATVSVMCLFIVPLLFLFYY 84
            L  F      A ++   +  +   +++K +   +    V    +++ LF+V + F+   
Sbjct: 46  ILLPFILGFSLAFLLAPVTARVEKKWLAKSKMKPSAKRKVGVAAAIVFLFVVLISFMAIL 105

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
               ++ +++     + +       L++I  G+     W + +       + S   +  +
Sbjct: 106 IPQLLESVMTLSTQLSDYLGKANTLLNEITEGLGFKTGWLEMVFSSSEALLESMLGMAKD 165

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            +  I  ++  F     ++ +++I  +  L    R      +   +L          ++S
Sbjct: 166 YVPKILNYSWSFVRQTFNFFIAVIIAVYILLEKERFTEQFKKLAYALLPKPKVEALIQLS 225

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
           R+  ++  S  +G  I ++  G++      +  +P  V +  I  +  MIP   P     
Sbjct: 226 RLTSRMFNSFIIGKMIDSLIIGVICFIGMLIMRLPFAVLISFIVGLTNMIPVFGPFIGAV 285

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             I++L   +   +    ++  +        L P ++G  + LP L   F ++ G    G
Sbjct: 286 PGIFILFIVDPIYSLIFAVFVLLLQQFDGNILGPMILGDQLGLPSLWVMFSIIVGGGMFG 345

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           +LG+F+G  + A++ V+ +  +    + K   S + 
Sbjct: 346 ILGMFLGVPVFAVLYVVVRGFVSGRLKEKNIRSDDM 381


>gi|7362948|emb|CAB83202.1| putative membrane protein [Gluconobacter oxydans]
          Length = 460

 Score = 93.7 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 50/349 (14%), Positives = 117/349 (33%), Gaps = 15/349 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +RE +      +  + +  +  SLYF      P + AL++             +      
Sbjct: 44  LREHLNIRDMCVLILTILAVFYSLYFTAPILLPFVFALVLNLLMIAPMRFLTQRLHLPRH 103

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++  V +  +                      +  A Q   P+   L+ + G +   
Sbjct: 104 LAGLMLIVMMFGIV-------GGIATTISVPAAGWITRAPQTLPPLQSKLALLSGPIDVV 156

Query: 121 E-----LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
           +     L      H  S            G + + R  S       +       M++ LF
Sbjct: 157 QRDYMRLSAMFSGHSGSTHTTHGVSGTMRGRNALSRLGSSVLAGTRELAGGFFSMLLMLF 216

Query: 176 FFYRDGFSISQQLDSLGE-HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           F   +G ++ ++   +   +       +++  + + +    + +T++ +G GLV     W
Sbjct: 217 FLMTEGDTLLRRCVEIMPTYAKKRRLVEMATQIEQNVSLYLVTITMMNLGVGLVNMIQCW 276

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
             G+P+ +  GV+  ++  IP   P+        + L    ++  A        +   + 
Sbjct: 277 ATGMPNPLLWGVLAFLLNYIPIIGPLTGVVVYFVVGLFSFPSLLYALLPPSIYLLIHVLE 336

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            +T+ P L+     L  +     L+      G+ G F+   ++A+  ++
Sbjct: 337 GETITPMLLARRFTLNPVFVMGSLLFWDWMWGISGAFLSVPMLAVFKIV 385


>gi|305682180|ref|ZP_07404984.1| putative membrane protein [Corynebacterium matruchotii ATCC 14266]
 gi|305658653|gb|EFM48156.1| putative membrane protein [Corynebacterium matruchotii ATCC 14266]
          Length = 472

 Score = 93.7 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 54/335 (16%), Positives = 121/335 (36%), Gaps = 21/335 (6%)

Query: 17  MFIILVSLYFLKGFFA-------PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           + II  + + +    +       P++ A+I+    WP  +    K    +   A+IA + 
Sbjct: 43  LLIIAAAAFVIWHILSQVWRGGLPIVLAIIVCTVLWPPVAWL-RKHGIPAGLAAMIAILG 101

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
               F   +  +    + + + L  +     Q    +  WL   P  +  S+L  +  + 
Sbjct: 102 SFGGFGFLIWLIAPSVVNQSQTLYFQAFEGVQR---LQLWLQGPPMNLDPSDLDDRIDTA 158

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            Q L+  + +         I         I     ++++ +++  FFF +DG      L 
Sbjct: 159 AQWLQSKAGS---------IASEVFSGLGIASSVMVTMLVVLVLTFFFLKDGDKFLPWLR 209

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +       +  ++       +        ++++ + + +GS   + GVP  +AL V+T 
Sbjct: 210 GMVGQRAGWHLTELLTRGWITLSGFIRAQALVSLVDAVFIGSGLIILGVPLALALAVLTF 269

Query: 250 IMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I   IP         +S+ + L+   +  A    +   +   +    L P L    + L 
Sbjct: 270 ITGFIPIVGAFIAGTLSVTVALVSLGVTEAVITLIIVLLVQQLEGNILSPLLQSKAVNLH 329

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            +     +  G     + G F+     A+ AV+++
Sbjct: 330 PVVVLISVTVGGSLFNIAGAFLAVPFAAMAAVLFR 364


>gi|310641211|ref|YP_003945969.1| sporulation integral membrane protein ytvi [Paenibacillus polymyxa
           SC2]
 gi|309246161|gb|ADO55728.1| Sporulation integral membrane protein YtvI [Paenibacillus polymyxa
           SC2]
          Length = 372

 Score = 93.7 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 131/365 (35%), Gaps = 14/365 (3%)

Query: 1   MRETMLNPQGIMRWMIMFII--LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES 58
           M   +LN      W+++ I+  L+ +Y L     P L A ++ +   P+     +K    
Sbjct: 1   MSRLILNRILRALWVVIVIVALLLGIYVLFPLVYPFLFAWLVAYAMNPLVVFLHNKARMP 60

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV-LANQHGIPVPRWLSDIPGGM 117
                 ++    +    + L       + E+ +L         +       W        
Sbjct: 61  RWAAVTVSLFVYLGGIAIILSAAITRMVREVIKLAMTFDGHIERFKSLFIDWTQSDLIQN 120

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSI-------I 168
              E+      +P     ++    KT       +     +F    L+   S+       +
Sbjct: 121 IIIEINHFIRDNPDYQHTINSNIDKTTQTVSSAVTTLVGQFFNGVLNLLTSLPNMGAVLM 180

Query: 169 FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLV 228
            ++++ FF  +D     + L +            I   + K +        II     L 
Sbjct: 181 VIVLSAFFISKDWDRHYRILSNTVPDTIRKPLSDIWHDLRKALYGYLRAQFIIISITALT 240

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
           +    ++  V S   +G++  ++ ++P  G  I      +Y  + GN+     L +  AI
Sbjct: 241 VIIGLFILRVESAFTIGLMIGLVDLLPYLGVGIVMIPWILYAYMSGNLALGVGLSILYAI 300

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            L I  + + P ++   + L  LPT  G+  G++  G LGL IGPV + ++  + + +++
Sbjct: 301 LL-IGRQIVEPKVLASSVGLNPLPTLIGMFIGLKLFGALGLIIGPVSLIVLDALNRANVI 359

Query: 348 AIKEN 352
               N
Sbjct: 360 QDLRN 364


>gi|147677394|ref|YP_001211609.1| permease [Pelotomaculum thermopropionicum SI]
 gi|146273491|dbj|BAF59240.1| predicted permease [Pelotomaculum thermopropionicum SI]
          Length = 349

 Score = 93.4 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 54/347 (15%), Positives = 136/347 (39%), Gaps = 14/347 (4%)

Query: 6   LNPQGIMRWMIMFIILVSL-YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
              + I+ + +M ++   L YF++G     + A  I +   P+ ++   +   +    A+
Sbjct: 10  RRRRSILFFAVMAVMAAGLFYFMRGLVFSFVLAAFITYLLNPLVNAIEKR--GAPRTSAI 67

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +     + +F+  +       ++E   ++++          +P +       + + +   
Sbjct: 68  LMAYLALFIFVAGVFMYGMPRIIEQLNVLAET---------LPVYTGRAREIIDSIQARY 118

Query: 125 KHLSHPQSLKILSETFLKT--NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             L  P  ++ + + ++ +   GI  + + A    +    Y   I+   +  F+F +D  
Sbjct: 119 TGLGIPDGVRQIIDEWVSSLEGGIMHLLKEAVAALIGMAGYIFKILLAPVLAFYFLKDFD 178

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I +++       +     ++ R + KV+ S   G  ++A   G +   A  + GV   +
Sbjct: 179 LIKRKITMFIPESYREEVFELFREIDKVLGSFIKGYILVAAMVGGLSAIAMAVLGVEFAL 238

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            LG+   +  +IP   P+     ++ L    + + A  + +   +   +    + P ++G
Sbjct: 239 MLGLFAGLTELIPYFGPVIGAVPAVGLAALKSKWLAVKVAIAFFVIHQLEGNIISPKILG 298

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
             + L  L   F L+ G +  GL G+ +     A+  V+   +   I
Sbjct: 299 NKVGLHPLVIIFSLLAGEKLYGLTGMLLAVPAAAVFRVVLNYACRKI 345


>gi|323127491|gb|ADX24788.1| hypothetical protein SDE12394_06650 [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 393

 Score = 93.4 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 59/337 (17%), Positives = 125/337 (37%), Gaps = 7/337 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + F      P++ + I+ + + P+    I+    S T    I    ++ LF+
Sbjct: 43  ISFLFTPVISFFAVIMLPLVISTILYYLTKPLVD-LINHLGPSRTTSIFIVFGLIILLFV 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +         ++   +  +             L +    +         L++     +
Sbjct: 102 WAISGFVPMVQTQLTSFIEDLPKYIGKVNEEANKLLENEWLVSYKPQLQDMLANTSQKAL 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   N ID+   FA     I     ++II     LF+F RD   +   L ++    
Sbjct: 162 DYAQSFSKNAIDWAGNFAGAIARIT----VAIIISPFILFYFLRDSGKMKNGLVNVLPIK 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   + K +     G   +AI  G +    + L G+   +  G+I   + MIP
Sbjct: 218 LRMPMARVLGDINKQLSGYVQGQVTVAIVVGFMFSIMFSLVGLKYSITFGIIAGFLNMIP 277

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G+ ++   V I  +++G +     L ++  IE  I  + + P ++G  + +  +   F
Sbjct: 278 YLGSFLAMIPVIIMAMVQGPLMLVKVLVIF-MIEQTIEGRFVAPLVLGNKLSIHPITIMF 336

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            L+      G+ G+F+   + A + V+ KE     ++
Sbjct: 337 LLLTAGSMFGVWGVFLVIPIYASVKVVVKELFDWYQK 373


>gi|46906829|ref|YP_013218.1| hypothetical protein LMOf2365_0613 [Listeria monocytogenes str. 4b
           F2365]
 gi|47093325|ref|ZP_00231094.1| membrane protein, putative [Listeria monocytogenes str. 4b H7858]
 gi|226223213|ref|YP_002757320.1| hypothetical protein Lm4b_00610 [Listeria monocytogenes Clip81459]
 gi|254824143|ref|ZP_05229144.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|254853217|ref|ZP_05242565.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|254932141|ref|ZP_05265500.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|254991724|ref|ZP_05273914.1| hypothetical protein LmonocytoFSL_00397 [Listeria monocytogenes FSL
           J2-064]
 gi|255520994|ref|ZP_05388231.1| hypothetical protein LmonocFSL_07186 [Listeria monocytogenes FSL
           J1-175]
 gi|300765351|ref|ZP_07075334.1| hypothetical protein LMHG_10257 [Listeria monocytogenes FSL N1-017]
 gi|46880095|gb|AAT03395.1| putative membrane protein [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47018294|gb|EAL09058.1| membrane protein, putative [Listeria monocytogenes str. 4b H7858]
 gi|225875675|emb|CAS04378.1| Conserved hypothetical membrane protein [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258606571|gb|EEW19179.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|293583697|gb|EFF95729.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|293593375|gb|EFG01136.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|300513912|gb|EFK40976.1| hypothetical protein LMHG_10257 [Listeria monocytogenes FSL N1-017]
 gi|328467412|gb|EGF38488.1| hypothetical protein LM1816_09972 [Listeria monocytogenes 1816]
 gi|328475871|gb|EGF46607.1| hypothetical protein LM220_07432 [Listeria monocytogenes 220]
          Length = 390

 Score = 93.4 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 124/336 (36%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI    +  LK   AP++ A I  +   PI       K +   +   +  + ++ L I
Sbjct: 37  IAFIFDPLMVILKTVAAPIILAGISYYLFNPIIDWLEKHKWKR-GWAIALLYLVIIGLLI 95

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +   F+      ++  L                  S         ++  K  ++   +  
Sbjct: 96  LLFSFVIPAVKDQIVSLFKSFPGYWDQITQKFDEFSR---SSLFDQIKDKLNTNMSDIMK 152

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   +     I    S  G +  +  L+I+   + LF+  +DG  +   L  +    
Sbjct: 153 TLSTKGTSVINSAISSIGSIVGTVT-EVVLAIVTTPLVLFYLLKDGKKLPDFLLKMLPVN 211

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
             A+ +++       I S   G  I+++  G++L   Y + G+P  + L +I A  +++P
Sbjct: 212 GRAHTRQVLGEANHQISSYIRGQIIVSLCIGILLFIGYLIIGLPYALTLAIIAACTSIVP 271

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P      +I + I  + +    L +   +   +  K + P ++G  +K+  +   F 
Sbjct: 272 YLGPAIAITPAIIIAIVTSPWLLIKLIIVWCVVQLLEGKFISPQVMGKTLKVHPITILFV 331

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           ++      G+LG+       A++ VI     +  K 
Sbjct: 332 ILVAGNLFGVLGVIFAVPGYAVLKVIVTHVFIWFKR 367


>gi|307705142|ref|ZP_07642018.1| conserved hypothetical protein [Streptococcus mitis SK597]
 gi|307621303|gb|EFO00364.1| conserved hypothetical protein [Streptococcus mitis SK597]
          Length = 388

 Score = 93.4 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 114/335 (34%), Gaps = 5/335 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    L FL     PV+ + ++ +   PI       K         I  V +    I
Sbjct: 42  ISFLFSPVLDFLAVVMLPVILSGLLYYLLNPIVDWMEKHKVNR-VIAITIVFVIIALFII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      V +  +    V   L              + L++  S   
Sbjct: 101 WGLAVAIPNLQRQVLTFARNVPIYLEDADRVIDDLVTKRLPDDFRPQLEQVLTNFSSQAT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +  + + +  ++++  F S    +     +++I +   LF+  RDG  +   L       
Sbjct: 161 VWASKVSSQAVNWVSAFISGISQV----IVALIIVPFMLFYLLRDGKGLRHYLTQFMPTK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   V + + +   G   +AI   ++    + + G+   V LGV   I+ ++P
Sbjct: 217 LKEPVGQVLSDVNQQLSNYVRGQVTVAIIVAVMFIIFFKIIGLRYAVTLGVTAGILNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPIMLLKVVIVFIVEQTIEGRFVSPLILGSQLNIHPINVLFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+      G+ G+ +G  + A   V+        K
Sbjct: 337 LLTSGSMFGIWGVLLGIPVYASAKVVISAIFEWYK 371


>gi|89895168|ref|YP_518655.1| hypothetical protein DSY2422 [Desulfitobacterium hafniense Y51]
 gi|89334616|dbj|BAE84211.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 344

 Score = 93.4 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 118/326 (36%), Gaps = 9/326 (2%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           +   +P + A ++ +   P+  + + +             +S+  +F+  LL L     +
Sbjct: 26  RPILSPFMLAFVLAYLLAPVVEALVRRGVGRK--------ISIALVFVGILLSLALLIFI 77

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            + +L  ++   +Q      R L  +     A+   T       S+     +  ++  I 
Sbjct: 78  VIPKLYIELSKLSQVLPETVRTLELVIQDFRANFRATGLPHQVVSVLDEHLSEGESFLIH 137

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
           ++  F            L  I   +   +   D   +      L        W+++ + +
Sbjct: 138 WLEEFLDNLPKALTSMSL-FILSPVIAIYLLADWQRLQAGFLRLVPQRKRVAWQRVVQDI 196

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
             ++RS   G  I+A+  G++ G    L G+   + +GVI  +  +IP   P+     S+
Sbjct: 197 SHIVRSFIRGNVIVALIVGILTGVGVKLVGMDYALLIGVICGVFDLIPYFGPLIGAVPSV 256

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            L +  +   A  + +   I   +    + P L+G  + L  L   F L+ G    G  G
Sbjct: 257 LLGLIQSPMMALKVAIVILIVQQLESSIISPKLMGDSVGLHPLWIIFALLAGGEIAGFWG 316

Query: 328 LFIGPVLMALIAVIWKESIMAIKENK 353
           +       A++ VI +     +   +
Sbjct: 317 MLFSVPFAAVLRVIIRHIYFWLVSPE 342


>gi|257867093|ref|ZP_05646746.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257873428|ref|ZP_05653081.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257801149|gb|EEV30079.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257807592|gb|EEV36414.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
          Length = 393

 Score = 93.4 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 46/319 (14%), Positives = 109/319 (34%), Gaps = 5/319 (1%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P++ A I+ +   P       K        ++     ++   IV  + +    + E    
Sbjct: 58  PIILAGILYYLMNPTVDYLERK--GIKRIYSIFGLFILVVGLIVWGVVVIIPKIQEQSMS 115

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
            +  +      I     +++I      S++  +  +  + L       ++      I   
Sbjct: 116 FADNLPGYLTII--ENKVNEILSDPIFSQVQEQIEASNEKLISSLTDIVQNLSRSTIQNL 173

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
            S FG +     L++I M   LF+  +DG  ++                 + + +   + 
Sbjct: 174 GSFFGAVAT-IVLAVITMPFILFYLLKDGRKLAPYFVKFLPTKMRQPSLVVLKEMNDQVS 232

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
           S   G   +A    ++    + + G+   + LG+    + +IP          +++L I 
Sbjct: 233 SYIRGQLTVAFAVAVMFMIGFSIIGLDYAITLGIAAGFLNLIPYLGSFLAMIPAVFLGIV 292

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
           G       + +   IE  I  + + P ++G  + +  +     L+   +  GL+G+ +G 
Sbjct: 293 GGPVLLIQVLIVFVIEQTIEGRLISPLVLGNELSIHPVTILLVLLTSGKLFGLVGVILGI 352

Query: 333 VLMALIAVIWKESIMAIKE 351
            + A   V+          
Sbjct: 353 PVYAAAKVVITHVFEWYTR 371


>gi|290892784|ref|ZP_06555775.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|290557596|gb|EFD91119.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
          Length = 390

 Score = 93.4 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 124/336 (36%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI    +  LK   AP++ A I  +   PI       K +   +   +  + ++ L I
Sbjct: 37  IAFIFDPLMVILKTIAAPIILAGISYYLFNPIIDWLEKHKWKR-GWAIALLYLVIIGLII 95

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +   F+      ++  L                  S         ++  K  ++   +  
Sbjct: 96  LLFSFVIPAVKDQIVSLFKSFPGYWDQITQKFDEFSR---SSLFDQIKDKLNTNMSDIMK 152

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   +     I    S  G +  +  L+I+   + LF+  +DG  +   L  +    
Sbjct: 153 TLSTKGTSVINSAISSIGSIVGTVT-EVVLAIVTTPLVLFYLLKDGKKLPDFLLKMLPVN 211

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
             A+ +++       I S   G  I+++  G++L   Y + G+P  + L +I A  +++P
Sbjct: 212 GRAHTRQVLGEANHQISSYIRGQIIVSLCIGILLFIGYLIIGLPYALTLAIIAACTSIVP 271

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P      +I + I  + +    L +   +   +  K + P ++G  +K+  +   F 
Sbjct: 272 YLGPAIAITPAIIIAIVTSPWLLIKLIIVWCVVQLLEGKFISPQVMGKTLKVHPITILFV 331

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           ++      G+LG+       A++ VI     +  K 
Sbjct: 332 ILVAGNLFGVLGVIFAVPGYAVLKVIVTHVFIWFKR 367


>gi|238792094|ref|ZP_04635730.1| permease perM [Yersinia intermedia ATCC 29909]
 gi|238728725|gb|EEQ20243.1| permease perM [Yersinia intermedia ATCC 29909]
          Length = 362

 Score = 93.4 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 56/358 (15%), Positives = 124/358 (34%), Gaps = 18/358 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +PQ I   +I+ +    LYF  G  AP+L+A+++ +   WP     + +   S  
Sbjct: 18  RRRFTDPQVIALLVILLVGFCILYFFSGILAPLLAAIVLAYLLEWPTAR--LQRIGCSRP 75

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           + A I  V    + ++ +  +      +   L+S           +P+ L+         
Sbjct: 76  WAASIVLVIFGGITLLAVFVVAPTVWQQGNNLIS----------DMPKMLNKFNAFAQTL 125

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGI--DFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                 L     + +++E          + + + +    +  L   + +I + + LFF  
Sbjct: 126 PSRYPALVDAGIVDMMAENLRSKLSGMGESVVKISLASLIGLLTLAIYLILVPLMLFFLL 185

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D   +   +  +         +     + + I +   G  +  +  G+     +++ G+
Sbjct: 186 KDKEQMLNAVRRILPRNRGLAGQVWLE-MNQQITNYIRGKVLEMVIVGIATYLVFFVMGM 244

Query: 239 PSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTL 296
              + L V+     +IP  GA I    V +  L +  +      LF+   +   +    L
Sbjct: 245 NYALLLAVLVGFSVLIPYIGAVIVTIPVVLVALFQWGVGADFWTLFIAYLVVQGLDGNLL 304

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            P L    + L  L     ++      G  G+F    L  L+  +          + +
Sbjct: 305 VPVLFSEAVNLHPLVIILSVIIFGGMWGFWGVFFAIPLATLVKAVIHAWPEEFIPDAD 362


>gi|227824347|ref|ZP_03989179.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226904846|gb|EEH90764.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 356

 Score = 93.4 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 52/340 (15%), Positives = 131/340 (38%), Gaps = 3/340 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++     +   +   +  F  PVL ++   +  +PI  +           +     V+V
Sbjct: 10  LVKSAFALLAFTAFCLVADFLLPVLISIAFSYLLYPIVRTLEKITWGRDRRMPSA--VAV 67

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +  F++ LLF+     + M  LV++V    +        +S      +  E      ++ 
Sbjct: 68  LLSFVIFLLFMSAALQILMVPLVTQVNTLTKALPGFAAQVSATMNWFFGPEARAALPANV 127

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           Q+L   + T    N +       S    +      S++ +    F+F +D  ++      
Sbjct: 128 QALINEALTTAGRNVMALFQDLISSTFRVARSMA-SMVLVPFLTFYFLKDWRTLKAMAVK 186

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +  +   A  +K+   +  ++ +    M  + +     L    ++ GV   + LG++  +
Sbjct: 187 VFPYDRQALAEKVLEDIGSMLCTYVDNMLKLCLVAAGCLTVGNYVLGVQYTLVLGLLAML 246

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             +IP    +  T V++++ +      A  + ++  +   +  + + P LVG  I L  +
Sbjct: 247 TELIPLVGSVVGTLVAVFVALLQRPALALQVLIFYLVYYQVDSQVIMPTLVGKAITLHPV 306

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
                ++ G +  G++GL     ++A+I +++       +
Sbjct: 307 LIILSVIIGGKLAGVIGLIFAVPVLAIIKILYGYFWHWGE 346


>gi|300780351|ref|ZP_07090207.1| permease [Corynebacterium genitalium ATCC 33030]
 gi|300534461|gb|EFK55520.1| permease [Corynebacterium genitalium ATCC 33030]
          Length = 506

 Score = 93.4 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 51/322 (15%), Positives = 106/322 (32%), Gaps = 17/322 (5%)

Query: 11  IMRWMIMFIILVSLYFLKGFF----APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
            +R++++ I    L+ + GF      P+L ALI     WP      + K   +     I 
Sbjct: 77  ALRFIVVVIATAFLFKIIGFVWVGVLPLLLALIFCTVLWPPVRWLRNHKVPGA-LAVFIV 135

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            ++           +      +  EL  +              +  I   +  S  +   
Sbjct: 136 LLAFFGAIGGLFAAMAPTIKTQSVELYHQAEEG----------VQRILDWVETSAPFDVD 185

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            S  +     +  F++    +      +  G +      ++  M++  FFF +DG     
Sbjct: 186 TSQIEQAISQAGDFVRGQASNIASGVVTGVGAVA-SIGTTLALMLVLTFFFLKDGDRFLP 244

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L          +  ++       +        I+++ + + +G    L GVP    L V
Sbjct: 245 WLRKYTGVKAGWHLTEVLMRSWNTLSGFIRTQAIVSLVDAIFIGLGLVLLGVPLAPVLAV 304

Query: 247 ITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           IT     IP     +  A+++ + L+ G +  A  +     +   +    L+P L    +
Sbjct: 305 ITFFGGFIPIIGAFTAGALAVVVALVSGGVTKALLVLALVILVQQLEGNVLQPVLQSQAM 364

Query: 306 KLPFLPTFFGLVGGVRTMGLLG 327
            L        +  G    G++G
Sbjct: 365 GLHAAIVLLAVAVGGTVFGIIG 386


>gi|269926458|ref|YP_003323081.1| protein of unknown function UPF0118 [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269790118|gb|ACZ42259.1| protein of unknown function UPF0118 [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 438

 Score = 93.4 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 53/347 (15%), Positives = 116/347 (33%), Gaps = 17/347 (4%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
                 + I  W+ + +IL  L+       P + A++  +   P+ S    +        
Sbjct: 5   RFTKRAKEITIWISIAVILYFLHSTAHLLTPFIWAIVATYIFHPLVSFLSRESGVPRAIW 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                  ++ L+I     + +  +  +  +  + +        +   +  I         
Sbjct: 65  -------IILLYIAAFSAVAWSLINVVPIIRDQSLALANQVPYILNQIEGIINRNQMLRE 117

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           W   +   Q    +    L  N  D+  R A     + +D  +     ++A FF      
Sbjct: 118 WGISVDLKQLESQVVA--LSDNFADYARRMAVPILTVVIDKAVKFFIFLVATFFLLLHAD 175

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I   L       +    + + R +   + +      I+     +          V   +
Sbjct: 176 HIKSSLLEFTPAPYRHEIENLLRRINDTLGAYLRSQLILLAIMTIATWIFLSAIHVQYAL 235

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKG--------NIFNATCLFLWGAIELFIVDK 294
            LGV+T  + +IP   P +   +++ + +          N   A  + L   I   + D 
Sbjct: 236 LLGVLTGFLELIPIIGPYTAGGIAVSVALFQSNPPFGWSNFTLAAVVALGYFILRQLEDN 295

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            + PFL+G  + L  +   F ++ G    G+LGL I   + +++ +I
Sbjct: 296 LVIPFLIGRVVHLNPIIVIFFIMAGASYGGILGLLIAVPIASVLRII 342


>gi|225870739|ref|YP_002746686.1| membrane protein [Streptococcus equi subsp. equi 4047]
 gi|225700143|emb|CAW94274.1| putative membrane protein [Streptococcus equi subsp. equi 4047]
          Length = 393

 Score = 93.4 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 64/337 (18%), Positives = 126/337 (37%), Gaps = 7/337 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    L FL     P++ + I+ + + P+    + K   + T    I    V+ LF 
Sbjct: 43  ISFLFTPILSFLAIIMLPLVISTILYYLTKPLVD-MVEKLGPNRTASIFIVFGLVILLFF 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +         +++  V  +             L +    +         L+      +
Sbjct: 102 WAISGFIPMIQDQLRSFVEDLPKYVAKVNLEANKLLENEWLVSYRSNLQDMLTSMSQKAL 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   N ID+   FA     I     ++II     LF+F RD   +   L ++    
Sbjct: 162 DYAQSFSKNAIDWAGNFAGAIARIT----VAIIMSPFILFYFLRDSGHMKNGLVNVLPIK 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   + K +     G   +AI  GL+    + L G+   +  G+I   + MIP
Sbjct: 218 LRQPMARVLGEINKQLSGYVQGQVTVAIVVGLMFSVMFSLVGLNYSITFGIIAGFLNMIP 277

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G+ ++   V I  +++G +     L ++  IE  I  + + P ++G  + +  +   F
Sbjct: 278 YLGSFLAMIPVVIMGMVQGPLMLIKVLIIF-VIEQTIEGRFVAPLVLGNKLSIHPITIMF 336

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            L+      G+ G+F+   + A + V+ KE     K+
Sbjct: 337 LLLTAGSMFGVWGVFLVIPVYASVKVVVKELFDWYKD 373


>gi|261405714|ref|YP_003241955.1| hypothetical protein GYMC10_1865 [Paenibacillus sp. Y412MC10]
 gi|261282177|gb|ACX64148.1| protein of unknown function UPF0118 [Paenibacillus sp. Y412MC10]
          Length = 358

 Score = 93.4 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 126/326 (38%), Gaps = 12/326 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             PV  A    +   PI      +K + S        + V+ L+ V       +G++   
Sbjct: 41  IVPVAMAGFFYYLLRPIVDYLERRKIKRS--------IGVLMLYFVFAGLCAIFGIVVWP 92

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L  ++     +   +   + +    +  ++ W++++     L      ++    I +I 
Sbjct: 93  TLREQIENFISNAPFLVEGVEEQIDQLQQNQFWSRYIPTESELSTSLTEYM-NRIITWIS 151

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              +    +     + I  + I L++  ++G  +  +L S+    +    +++   +   
Sbjct: 152 NSINNLISVVSGVVVIIATIPIILYYMLKEGSKLPPRLLSVLPRRYRRDGQEVLGEIDTA 211

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
           + +  +G  I+ +   +++   + + G+P  + L VI+  +  IP  GA ++   V I  
Sbjct: 212 LSNFIIGKVILNLILSVMIYIGFLIIGLPYSLLLTVISFFLNFIPYIGALLATVPVVIIG 271

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            I+ +   A    +   I   I D  L P + G  + +  L T   ++ G    GLLG+ 
Sbjct: 272 FIE-SPSIAIWSVVVIVIAQQIQDNILTPVIYGKQLDIHPLTTVVLILVGGDFFGLLGIL 330

Query: 330 IG-PVLMALIAVIWKESIMAIKENKE 354
           +  P  M +  +  +   + + E  E
Sbjct: 331 LAIPAYMIIKIIAVRIYELFLAEKVE 356


>gi|330508411|ref|YP_004384839.1| hypothetical protein MCON_2605 [Methanosaeta concilii GP-6]
 gi|328929219|gb|AEB69021.1| Domain of unknown function protein (DUF20) [Methanosaeta concilii
           GP-6]
          Length = 355

 Score = 93.4 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 116/303 (38%), Gaps = 6/303 (1%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           P+Y+ F  +  +     + ++ + V  L +  +L +    ++E+  L S   +++     
Sbjct: 45  PLYALFF-RLTKKKQISSFLSIMLVFILILSLILGITSALLVELSYLQSSGAISDVEIDK 103

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID---FIPRFASRFGMIFLD 162
               +         + L+   +                        + R  + FG     
Sbjct: 104 TINEIDAWSKSFIPAWLYNSIIEIALRYAQEISDIPIAFATWVFPILQRELTAFGSNLPI 163

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
               +I ++   ++   DG     Q   L         ++    +  +  + F      +
Sbjct: 164 LFAHLIVVVFFTYYLLIDGKVFIDQAVDLVPQEKQGIVRRFLDELYSIYHTLFTVYFSTS 223

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCL 281
           +  G++    + L G+P    +GV+ A+  ++P  G P  F  +++Y LI G++F    L
Sbjct: 224 MLSGVMAAIGFSLLGIPYPFLMGVVVAVFTLLPLLGPPFVFIPIAVYYLIVGDLFRCLIL 283

Query: 282 FLWGAIELFIV-DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            ++G + L ++ +  +RP L     ++  + T       +  +G++G+ +GP L   +  
Sbjct: 284 LVFGTVVLMVIPENVIRPHLAMMSSRIHPILTLLAYTAPIFVIGIIGVIVGPTLYGFLLA 343

Query: 341 IWK 343
           +++
Sbjct: 344 VYR 346


>gi|193782537|ref|NP_435317.2| hypothetical protein SMa0136 [Sinorhizobium meliloti 1021]
 gi|307300731|ref|ZP_07580506.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
 gi|307319142|ref|ZP_07598572.1| protein of unknown function UPF0118 [Sinorhizobium meliloti AK83]
 gi|193072993|gb|AAK64729.2| conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|306895249|gb|EFN26005.1| protein of unknown function UPF0118 [Sinorhizobium meliloti AK83]
 gi|306904265|gb|EFN34850.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
          Length = 670

 Score = 93.4 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 49/334 (14%), Positives = 113/334 (33%), Gaps = 16/334 (4%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           YF +  F P+  A+++ F   P+ S    ++      +AVI TV+   LF+     +   
Sbjct: 51  YFARDVFLPLAIAILLTFALAPLVSRL--RRVGCPRSVAVIGTVTTAFLFLSAFGVVIAM 108

Query: 85  GMLEMKE--------LVSKVVLANQHGI--PVPRWLSDIPG--GMWASELWTKHLSHPQS 132
            + E+ +        +V KV    + G    +   +  +        S    +  + P+ 
Sbjct: 109 QVSEVAQNLPTYQYNIVEKVRTLKETGSESQILERIGRVIERISTEISRPEPEVRASPEP 168

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                   ++                  L    +   +I+ + F   +   +  +   L 
Sbjct: 169 TPETKPLLVEIFSPQRPIETLKNIINPLLGPLATTGLVIVVVIFMLLEREELRDRFIRLV 228

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            +       +  +     +    L   ++ I  G+ L     L G+P+ V  G++  ++ 
Sbjct: 229 GYGDLHRTTEALQDAGARVGRYLLMQLVVNITYGIPLAIGLSLLGIPNAVLWGMLAIVLR 288

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF--IVDKTLRPFLVGGPIKLPFL 310
            +P   P+   A+ ++L        +  ++      +   + +  + P+L G    L  L
Sbjct: 289 FVPYIGPVIAAALPLFLAFAAAPGWSLLVWTAALFIVLELLSNNVVEPWLYGSRTGLSPL 348

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                 +      G +GL +   L   + V+ + 
Sbjct: 349 AIIVAAIFWAWLWGPVGLVLSTPLTVCLVVLGRH 382


>gi|315221750|ref|ZP_07863664.1| conserved hypothetical protein [Streptococcus anginosus F0211]
 gi|315189136|gb|EFU22837.1| conserved hypothetical protein [Streptococcus anginosus F0211]
          Length = 392

 Score = 93.4 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 114/336 (33%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI +  L F+     PV+ A ++ +   PI       K         I  + +  L I
Sbjct: 42  ISFIFIPVLEFIGVIMLPVILAGLLYYLLNPIVDWMEKHKVNR-LVAITIVFILIALLLI 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++   V  +    +    + +   +            +  ++      
Sbjct: 101 WGLAVAIPSLQHQIVSFVKNLPANLKKSNKIIQDFLENRISDDVKPQLEEIANNFSDQVT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              +   +  ++++    S    +     ++II M   LF+  RDG ++   L       
Sbjct: 161 AWASNFSSKAVNWVSTLISTASQV----IVAIIIMPFILFYLLRDGKNLKSYLTKFMPTK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F     +I   V   + +   G   +AI   ++    + + G+   V LGV   I+ ++P
Sbjct: 217 FREPVGQILTDVNTQLANYVRGQVTVAIIVAIMFILFFKIIGLRYAVTLGVTAGILNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPIMLLKVIVVFIVEQTIEGRFVSPLILGSQLNIHPINVLFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      G+ G+ +G  + A   V+        K+
Sbjct: 337 LLTAGSMFGIWGVLLGIPVYASAKVVIAAIFKWYKK 372


>gi|329922720|ref|ZP_08278272.1| putative membrane protein [Paenibacillus sp. HGF5]
 gi|328942062|gb|EGG38345.1| putative membrane protein [Paenibacillus sp. HGF5]
          Length = 358

 Score = 93.4 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 122/325 (37%), Gaps = 10/325 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             PV  A    +   PI      +K + S        + V+ L+ V       +G++   
Sbjct: 41  IVPVAMAGFFYYLLRPIVDYLERRKIKRS--------IGVLMLYFVFAGLCAIFGIVVWP 92

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L  ++     +   +   + +    +  ++ W++++     L      ++    I +I 
Sbjct: 93  TLREQIENFISNAPFLVEGVEEQIDQLQQNQFWSRYIPTESELSTSLTEYM-NRIITWIS 151

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              +    +     + I  + I L++  ++G  +  +L S+    +    +++   +   
Sbjct: 152 NSINNLISVVSGVVVIIATIPIILYYMLKEGSKLPPRLLSVLPRRYRRDGQEVLGEIDTA 211

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + +  +G  I+ +   +++   + + G+P  + L VI+  +  IP    +  T   + + 
Sbjct: 212 LSNFIIGKVILNLILSVMIYIGFLIIGLPYSLLLTVISFFLNFIPYIGALLATIPVVIIG 271

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +   A    +   I   I D  L P + G  + +  L T   ++ G    GLLG+ +
Sbjct: 272 FIESPSIAIWSVVVIVIAQQIQDNILTPVIYGKQLDIHPLTTVVLILVGGDFFGLLGILL 331

Query: 331 G-PVLMALIAVIWKESIMAIKENKE 354
             P  M +  +  +   + + E  E
Sbjct: 332 AIPAYMIIKIIAVRIYELFLAEKVE 356


>gi|125717741|ref|YP_001034874.1| permease, putative [Streptococcus sanguinis SK36]
 gi|125497658|gb|ABN44324.1| Conserved permease, putative [Streptococcus sanguinis SK36]
 gi|325689947|gb|EGD31951.1| permease [Streptococcus sanguinis SK115]
 gi|328945949|gb|EGG40096.1| permease [Streptococcus sanguinis SK1087]
          Length = 392

 Score = 93.4 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 122/337 (36%), Gaps = 8/337 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP-LLFLFYY 84
           FL     PV+ A ++ +   PI       K      +A+     ++   I+  L      
Sbjct: 52  FLGVIMLPVILAGLLYYLLNPIVDWMEKHKINR--LVAITIVFVLIAFLIIWGLAVAIPS 109

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
              ++   V  V    +      +++ D+     +++   +   +  +L      +  +N
Sbjct: 110 LQHQVMAFVRNVPAYLKQAD---KFIDDVVTKYISADFKPQIEEYTSNLSSQITDW-ASN 165

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
                  +A           ++II M   LF+  RDG ++   +       F A + ++ 
Sbjct: 166 FSSRAVNWAGNLISTTSQIVVAIIIMPFILFYLLRDGKNLKGYVTQFLPTKFRASFGQVM 225

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
             +   + +   G   +AI   L+    + + G+   V LGVI  ++ ++P  G+ ++  
Sbjct: 226 TDINSQLANYVRGQVTVAIIVALMFIVFFKIIGLRYGVTLGVIAGVLNLVPYLGSFLAML 285

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
                 LI G       + +   +E  I  + + P ++G  + +  +   F L+      
Sbjct: 286 PALAIGLIAGGPVMLAKVIVVFIVEQTIEGRFVSPLVLGSQLSIHPITILFVLLTSGTMF 345

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           G+ G+F+G    A   V         ++      ++F
Sbjct: 346 GIWGVFLGIPAYASAKVAIAAIFKWYQKVSGLYEADF 382


>gi|156932965|ref|YP_001436881.1| hypothetical protein ESA_00768 [Cronobacter sakazakii ATCC BAA-894]
 gi|156531219|gb|ABU76045.1| hypothetical protein ESA_00768 [Cronobacter sakazakii ATCC BAA-894]
          Length = 354

 Score = 93.4 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 58/356 (16%), Positives = 120/356 (33%), Gaps = 14/356 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +P+ I    I+      L+FL G  AP+L A+++ +   WP     + +   S  
Sbjct: 10  RRRFSDPEAIALLAILVAGFCILFFLHGLLAPLLVAIVLAYLLEWPTSR--LQRIGCSRG 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A +  V  + + +V    +      +   L+  +         +  + + +P    A 
Sbjct: 68  LAATLVLVLFIGIVLVMAFVVVPVAWQQGINLIRDIPGMLNK---LSDFAATLPKRFPAL 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                  +  ++++    T       D + +++    +  L   + +I + + +FF  +D
Sbjct: 125 MDAGIIDAIAENMRTRIITL-----GDSVVKYSLASLVGLLTLAIYLILVPLMVFFLVKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +         +     + + I +   G  +  I  G+     + + G+  
Sbjct: 180 KEQLLNAVRRVLPRNRGLAGQVWVE-MNQQITNYIRGKVLEMIVVGVATWIGFLIFGLNY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V+  I  +IP  GA +    V  + L   G        F    I   +    L P
Sbjct: 239 SLLLAVLVGISVLIPYIGAFMVTIPVVCVALFQFGMGTEFWSCFAVYLIIQGLDGNVLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            L    + L  L     +V      G  G+F    L  LI  +           +E
Sbjct: 299 VLFSEAVNLHPLVIILSVVIFGGLWGFWGIFFAIPLATLIKAVVHAWPETTPTAQE 354


>gi|325068678|ref|ZP_08127351.1| hypothetical protein AoriK_12686 [Actinomyces oris K20]
          Length = 440

 Score = 93.4 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 56/333 (16%), Positives = 116/333 (34%), Gaps = 13/333 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS-TFLAVIATVSVMC 72
            +++ ++  +   +   F  +  AL+      P+ + F         TFLA++ T+  + 
Sbjct: 99  IIVIGLVFYATSQVIPVFIGLFMALVFTSILQPMVNLFARIMPRYPATFLALLTTIGAI- 157

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
                   L  Y +  +        LA+Q G  +   +  +  G     L  + + H   
Sbjct: 158 ------AGLVTYVVASVTS--QWSSLASQFGDGLNTIMDFLEKGPL--HLTQQQIYHQLQ 207

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           L +        +    +           +D    +   +    FF   G  + +   +  
Sbjct: 208 LWLRQGQHYLQSNAPSLASEVLSNASAVVDVLTVLALALFVTIFFLASGGRMWRWFLNEL 267

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                    + +            G  ++A+ + ++ G    LAG+P    L V+  I A
Sbjct: 268 PATMRESTHRAAGAGWYTFAGYARGTVLVALTDAIMAGIFLQLAGIPLAAPLAVLVFIGA 327

Query: 253 MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            IP  GAP++     +  L  G       + +  A    I    L+P ++G  + L  + 
Sbjct: 328 FIPIIGAPLAMLVAMVVALASGGFVTMIVVGVGVAGIGQIEGHILQPLIMGRQVSLHPVV 387

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              G+  G    GLLG  +   L++++  ++ E
Sbjct: 388 VIIGVALGTYAAGLLGAIVAVPLISVLWSVYSE 420


>gi|90419523|ref|ZP_01227433.1| putative permease [Aurantimonas manganoxydans SI85-9A1]
 gi|90336460|gb|EAS50201.1| putative permease [Aurantimonas manganoxydans SI85-9A1]
          Length = 386

 Score = 93.4 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/334 (12%), Positives = 113/334 (33%), Gaps = 19/334 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++  Q +   +   + ++ L+   G   P L  ++I +   P+   F  +   S   
Sbjct: 4   RSALIRRQVLFWSVAALVSILLLWVFSGILLPFLVGMVIAYFLDPVADWFERR-GFSRLM 62

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++  +  +  F   +L +      ++   V ++          P +L  +     ++ 
Sbjct: 63  ATIVILILFVLFFAAAILVVVPVVGSQIASFVERI----------PDYLDRLQAIAVSAR 112

Query: 122 LWTKHLSHPQSLKILSETFLK--TNGIDFIPRFASRFGMI---FLDYCLSIIFMIIALFF 176
                           + F +  + G   +  F           +++    I   +  F+
Sbjct: 113 SGPLAFLFTGEEMNFKQDFAQFASEGTGIVTSFLGGLWSSSLAVVNFVSLFIVAPVVAFY 172

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
              D   +  ++D+          ++++R + + +     G   + +  G + G    L 
Sbjct: 173 LLLDWDRMVDKIDAWTPRQHVDTVRRLAREIDRSVAGFVRGQGSVCLILGTIYGVGLTLT 232

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVD 293
           G+   + +G+   +++ IP         +++ + +     +  +   + +   +  F   
Sbjct: 233 GLNFGLLIGLFAGLISFIPYVGSAIGLILALGVALVQFWPDWVSILMVAVVFFVGQFFEG 292

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
             L+P LVG  + L  +   F L       G +G
Sbjct: 293 NILQPKLVGASVGLHPVWLMFALFAFGALFGFVG 326


>gi|318057626|ref|ZP_07976349.1| integral membrane protein [Streptomyces sp. SA3_actG]
          Length = 443

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 44/307 (14%), Positives = 106/307 (34%), Gaps = 19/307 (6%)

Query: 17  MFIILVSLYFLKGFFAPV---LSALIIGFTSWPIYSSFISKKEES---STFLAVIATVSV 70
           + ++  +++ L    + V   + A ++      +    +++             + T+  
Sbjct: 80  LLVLAATVWVLMKVISAVRLVVLAFVVALLITALLQPLVARLTRHGVPRGLATALTTLFG 139

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             +  +   F+ +  M  + +L S+V    +    + RWL D P  +   ++        
Sbjct: 140 FLVMGLMGWFVVWQIMDNVDQLSSQVQDGIE---DLRRWLLDSPFHVTEKQI-------- 188

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
             +       + TN              I ++    ++    +  F   DG  I      
Sbjct: 189 NDIAKNLREAIGTNTDQLTSAGIEGV-TIIVEMFTGLLLAFFSTIFLLYDGQRIWGWFLK 247

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L                   + S   G  I+A+ + + +G   ++  VP  V L VI  +
Sbjct: 248 LVPAAAREGVAGAGPRAWNTLTSYVRGTVIVALIDAVFIGIGIYVLEVPMAVPLAVIIFL 307

Query: 251 MAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            A +P    +   A+++ + L+   ++ A  +     +   I    L+PF++G  +++  
Sbjct: 308 AAFVPLVGAVVSGALAVLVALVTQGVWAAIIVLGVVLLVQQIEGHVLQPFILGRAVRVHP 367

Query: 310 LPTFFGL 316
           L     +
Sbjct: 368 LAVVLSV 374


>gi|313634086|gb|EFS00758.1| permease [Listeria seeligeri FSL N1-067]
          Length = 378

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 53/349 (15%), Positives = 124/349 (35%), Gaps = 14/349 (4%)

Query: 16  IMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           ++FI+L   Y            F P+L A  + +   P+      +K        +I  +
Sbjct: 24  VVFILLQMKYIFSPIGIIVSTLFMPILVAGFLFYLFNPLVLFLEKRKVPR-ILSVIIIFI 82

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           + + L ++ ++ L      ++ EL   +    Q      +WL  +        +    L 
Sbjct: 83  AFIALIVLAIMQLGPTLADQVTELAKAIPGYWQ---DFEKWLQGLSNNSSLQGV---DLK 136

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                  +S   + +  +D +             + + ++ +   +F+ ++DG    +  
Sbjct: 137 AELEKLNISLPKIMSVVVDGVASSFGAIVSFVSGFVMILVTVPFIVFYMFKDGHKFVESS 196

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                       K+I + + K I +      I  I  G+     Y + G P  +  G+I 
Sbjct: 197 GKFFPAAIRTEAKQIIKEMNKTISTYISSQAIDCIVVGMFTFVGYLIIGQPYALLFGLIA 256

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
               +IP   P    A ++ + +  +   A  + +   I   +    L P+++G  + + 
Sbjct: 257 GATNIIPYLGPFIGAAPAVIVALFTSPLQALLVIIVVTIVQQLDSNLLSPYIMGKSLSIH 316

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
            L     L+      G+ G+ +G  + A++  +       IK  + +++
Sbjct: 317 PLTIIIILIVAGNLAGIFGMILGVPVYAVVKTVIVNVNRLIKLRRNELA 365


>gi|302521655|ref|ZP_07273997.1| integral membrane protein [Streptomyces sp. SPB78]
 gi|302430550|gb|EFL02366.1| integral membrane protein [Streptomyces sp. SPB78]
          Length = 443

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 44/307 (14%), Positives = 106/307 (34%), Gaps = 19/307 (6%)

Query: 17  MFIILVSLYFLKGFFAPV---LSALIIGFTSWPIYSSFISKKEES---STFLAVIATVSV 70
           + ++  +++ L    + V   + A ++      +    +++             + T+  
Sbjct: 80  LLVLAATVWVLMKVISAVRLVVLAFVVALLITALLQPLVARLTRHGVPRGLATALTTLFG 139

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             +  +   F+ +  M  + +L S+V    +    + RWL D P  +   ++        
Sbjct: 140 FLVMGLMGWFVVWQIMDNVDQLSSQVQDGIE---DLRRWLLDSPFHVTEKQI-------- 188

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
             +       + TN              I ++    ++    +  F   DG  I      
Sbjct: 189 NDIAKNLREAIGTNTDQLTSAGIEGV-TIIVEMFTGLLLAFFSTIFLLYDGQRIWGWFLK 247

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L                   + S   G  I+A+ + + +G   ++  VP  V L VI  +
Sbjct: 248 LVPAAAREGVAGAGPRAWNTLTSYVRGTVIVALIDAVFIGIGIYVLEVPMAVPLAVIIFL 307

Query: 251 MAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            A +P    +   A+++ + L+   ++ A  +     +   I    L+PF++G  +++  
Sbjct: 308 AAFVPLVGAVVSGALAVLVALVTQGVWAAIIVLGVVLLVQQIEGHVLQPFILGRAVRVHP 367

Query: 310 LPTFFGL 316
           L     +
Sbjct: 368 LAVVLSV 374


>gi|134298635|ref|YP_001112131.1| hypothetical protein Dred_0768 [Desulfotomaculum reducens MI-1]
 gi|134051335|gb|ABO49306.1| protein of unknown function UPF0118 [Desulfotomaculum reducens
           MI-1]
          Length = 343

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 52/327 (15%), Positives = 124/327 (37%), Gaps = 9/327 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
            ++ +IL  LY ++G F P + A+++ +   P+      +             V+++ L+
Sbjct: 17  FLIGLILFFLYLIRGLFVPFILAIVLVYMLNPLVERMEKRGSPR--------VVAILILY 68

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +  ++      M  +  +V+++    ++       + +I   +      +      Q + 
Sbjct: 69  LGVVIVATSLLMYGVPRMVNQLEKMVENIPLYTDQVEEIVRNIQKRFADSSMPPGVQQIV 128

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                ++++  +  I R +    M  L     I    +  F+  +D   I     S+   
Sbjct: 129 DERIRWVESRVLA-IVRKSMDLLMALLSNLFYIALAPVLAFYIMKDLKLIKNWTRSIVPK 187

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                   ++R V  V  +   G   + +  G++   A+ + G+      G+I  I  +I
Sbjct: 188 ELVEDVFYLARKVDDVFSNFIRGHLTVVVIVGILSSLAFMVIGLEFAAMFGIIAGIAELI 247

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P   P+   A ++ + +  + +    + L   I   +    + P ++G  + L  L    
Sbjct: 248 PYFGPLIGAAPAVGIALLHSKYMTLKVILAVLIIQQVEGNIISPKIMGNCMGLHPLVIIV 307

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L+ G    G+ G+ +   L A+I +I
Sbjct: 308 ALLAGGHLFGIAGMLLAVPLAAIIKII 334


>gi|237815164|ref|ZP_04594162.1| ATP/GTP-binding protein [Brucella abortus str. 2308 A]
 gi|260883502|ref|ZP_05895116.1| permease [Brucella abortus bv. 9 str. C68]
 gi|297248081|ref|ZP_06931799.1| ATP/GTP-binding protein [Brucella abortus bv. 5 str. B3196]
 gi|237790001|gb|EEP64211.1| ATP/GTP-binding protein [Brucella abortus str. 2308 A]
 gi|260873030|gb|EEX80099.1| permease [Brucella abortus bv. 9 str. C68]
 gi|297175250|gb|EFH34597.1| ATP/GTP-binding protein [Brucella abortus bv. 5 str. B3196]
          Length = 658

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 49/328 (14%), Positives = 114/328 (34%), Gaps = 24/328 (7%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G M + ++F+++ S   L  F A +     + +   P+      K   S    +++  + 
Sbjct: 51  GAMAFFVLFLVVFSS-VLLPFVAGMA----LAYFLDPVADRLE-KVGLSRLAASIVILLI 104

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI--PGGMWASELWTKHL 127
            + + I+ L+ +      ++ + +S +          P +++ +        SE   K++
Sbjct: 105 FLMILIIGLMIVVPILATQLADFISNL----------PGYITQLQSLLANRDSEWLKKYI 154

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRDGFSI 184
               ++   + + L   G  F+          G   +D     +   +  F+   D   +
Sbjct: 155 GIDSTVIQQNLSSLLQQGAGFLSTLLQSLWNSGKSLIDIAGLFVVTPVVAFYMLLDWDRM 214

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              +DS          ++I+R +   +     G   + +  G        L G+   + +
Sbjct: 215 VNSIDSWVPRKQLHTVRRIAREMNAAVAGFIRGQGTLCLILGTYYAIGLTLTGLNFGLLI 274

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLV 301
           G    +++ IP        A++I + +     +      +     +  FI    L+P LV
Sbjct: 275 GFFAGLISFIPYIGSFVGLALAIGVALVQFWPDWIMVCTVAAVFFLGQFIEGNILQPKLV 334

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           G  + L  +   F L       G  G+ 
Sbjct: 335 GSSVGLHPVWLMFALFAFGSLFGFTGML 362


>gi|218291267|ref|ZP_03495243.1| protein of unknown function UPF0118 [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218238815|gb|EED06027.1| protein of unknown function UPF0118 [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 354

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 47/324 (14%), Positives = 108/324 (33%), Gaps = 12/324 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L   F   L++LII +   P       ++   S      A + V  +    L  +    
Sbjct: 36  VLSSLFYTFLASLIITYILQPAVDVLHRRRVPRSA-----AILIVYAVIAAILAVVVLNL 90

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +  +   ++++  +      +P   +++   +        +L +     I +      + 
Sbjct: 91  IPVISRQIAQLSSS------LPAITAELSRWIDMINSRKTYLPNAVRTGIENALNQLEHR 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           ++  P          L+       +   +F+  +D  +I + +  +    +    + + R
Sbjct: 145 VEVAPTGLFSVVTSTLNAIFMAFVVPFLVFYMLKDAKAIGRGMVRMAPAKYKHRVRLVLR 204

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS-FTA 264
            +   +     G  +I +  GL+    Y +  +P  + LG       +IP   PI     
Sbjct: 205 AIDDTLGGYVRGQFLIMLAVGLLSFIGYLIIRLPYALLLGAFLGFADIIPYLGPIIGIAP 264

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             I  L          + +       +    L P ++G  + L  +     L+ G    G
Sbjct: 265 AVIIALTTSGWPMLVKVVIVNIAVQQVEGNILSPQIMGRTLHLHPMAIVAALIVGGEAGG 324

Query: 325 LLGLFIGPVLMALIAVIWKESIMA 348
           ++GL +    +A+  V+W     A
Sbjct: 325 IVGLVLAVPALAVCKVVWMHWREA 348


>gi|225022952|ref|ZP_03712144.1| hypothetical protein CORMATOL_02998 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944175|gb|EEG25384.1| hypothetical protein CORMATOL_02998 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 472

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 54/335 (16%), Positives = 121/335 (36%), Gaps = 21/335 (6%)

Query: 17  MFIILVSLYFLKGFFA-------PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           + II  + + +    +       P++ A+I+    WP  +    K    +   A+IA + 
Sbjct: 43  LLIIAAAAFVIWHILSQVWRGGLPIVLAIIVCTVLWPPVAWL-RKHGIPAGLAAMIAILG 101

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
               F   +  +    + + + L  +     Q    +  WL   P  +  S+L  +  + 
Sbjct: 102 SFGGFGFLIWLIAPSVVNQSQTLYFQAFEGVQR---LQLWLQGPPMNLDPSDLDDRIDTA 158

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            Q L+  + +         I         I     ++++ +++  FFF +DG      L 
Sbjct: 159 AQWLQSKAGS---------IASEVFSGLGIASSVMVTMLVVLVLTFFFLKDGDKFLPWLR 209

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +       +  ++       +        ++++ + + +GS   + GVP  +AL V+T 
Sbjct: 210 GMVGQRAGWHLTELLTRGWITLSGFIRAQALVSLVDAVFIGSGLIILGVPLALALAVLTF 269

Query: 250 IMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I   IP         +S+ + L+   +  A    +   +   +    L P L    + L 
Sbjct: 270 ITGFIPIVGAFIAGTLSVTVALVSLGVTEAVITLIIVLLVQQLEGNILSPLLQSKAVNLH 329

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            +     +  G     + G F+     A+ AV+++
Sbjct: 330 PVVVLISVTVGGSLFNIAGAFLAVPFAAMAAVLFR 364


>gi|166711227|ref|ZP_02242434.1| permease [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 388

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 50/330 (15%), Positives = 127/330 (38%), Gaps = 12/330 (3%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           +L  +  L     P + AL++ +   P+          S     ++  V    LF++ L+
Sbjct: 25  VLWVISLLAPILTPFVLALLLAWLGDPLVDRIERA-GRSRNAAVMLVFVLATLLFVLALM 83

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            L      ++  L+  +       I      + IP     + +       P+ L     +
Sbjct: 84  ILVPMIERQIMTLIEALPQMRNWAIG-----TAIPWLEAKTGMQLMAWLDPERLIDWIRS 138

Query: 140 FLKTNGI--DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
             +  G     +  + SR G   + + +++  + I  F+F RD   + +++ ++    + 
Sbjct: 139 HWEQAGGVAKTLFGYVSRSGFAMVTWVINLALLPILAFYFLRDWDRLVERVAAVVPRAYI 198

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-- 255
               ++++    V+     G  ++ +  G +  +   + G+   + +G+I  +++ IP  
Sbjct: 199 GTVSRLAQESNDVLGGFIRGQFLVMLALGAIYATGMSIIGLNLGLLIGIIAGLISFIPYL 258

Query: 256 -GGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
                I    ++  +  +G ++     + +   +   +    L P +VG  I L  +   
Sbjct: 259 GATTGIVLALLAAIVQAQGLDLKLLIGVGVVFTVGQLLESYVLTPRIVGDKIGLHPVAVI 318

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           F ++ G +  G LG+ +   + A+  V+ +
Sbjct: 319 FAVMAGGQLFGFLGMLLALPVAAVANVLLR 348


>gi|57641097|ref|YP_183575.1| hypothetical protein TK1162 [Thermococcus kodakarensis KOD1]
 gi|57159421|dbj|BAD85351.1| hypothetical membrane protein, conserved, DUF20 family
           [Thermococcus kodakarensis KOD1]
          Length = 330

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 49/314 (15%), Positives = 118/314 (37%), Gaps = 29/314 (9%)

Query: 37  ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV 96
           A    +  +P++     K        + +    ++ +  +  +F F   + ++K  ++  
Sbjct: 33  AATTAYILYPVHERLEGKIGGR---WSALTLTGILTVVSLLFVFGFALLINDVKYSLANY 89

Query: 97  VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
           V           WL  +     A E+  +               +          +   +
Sbjct: 90  VDT------FVGWLLGLNLPPSAYEVLQR---------------ISLGISQRFNSYVLGY 128

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
                   L +I  + + +    +  +I Q++ SL         +K+     + +     
Sbjct: 129 TYSLPTLLLQVIVTVFSFYGILVNADAIKQEVYSLIPPTNRDLARKLIDSGAETLHIVLR 188

Query: 217 GMTIIAIGEGLVLGSAYWLAGVP---SHVALGVITAIMAMIP-GGAPISFTAVSIYLLIK 272
           G  ++ +G+G+++   + + G+      VA G++T ++ ++P  G  I +     YL+ +
Sbjct: 189 GWLLVGVGKGILMALFFRVFGISDVGGAVAAGILTVVIELLPVVGGWIVWVGGVAYLINQ 248

Query: 273 GNIFNATCLFLWGAIELF-IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
           G+I +   L + G   +  + D  LR  +      +  + +  G +GG    G +G+ IG
Sbjct: 249 GHILSGVLLAVLGFSLVSPLPDILLRDKISRLKWGVNAIISLLGFIGGYIAFGFVGIIIG 308

Query: 332 PVLMALIAVIWKES 345
           PV + L+  + +E 
Sbjct: 309 PVSLGLLKTLVEEW 322


>gi|304440319|ref|ZP_07400208.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371071|gb|EFM24688.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 415

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 58/350 (16%), Positives = 137/350 (39%), Gaps = 7/350 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             I+ +I      LK  F  +  A+I+ F   P+ +    K      +  +I   + + +
Sbjct: 66  LFIVLMIFNKYKILKDTFFSIFIAMILAFIINPLVTKLEGK-GIKRGYGVIIVYFAFLLI 124

Query: 74  FIVPLLFLFYYGMLEMKELVSK----VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
             V +  +    + E+ +LV++    + + +     + + L+ I  G   +      ++ 
Sbjct: 125 LTVLIATVIPKTVQELTKLVAQAPATLDILSIKAEEISKSLAKIFEGKMFTGFNPSDMNL 184

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMI--FLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            ++        LK +    I    +    I   L   + +  +++  ++F  D   I  +
Sbjct: 185 VETFGDKFLEILKKSQDLMISNLKNIATGISTVLYSFVKLFIVLVFSYYFVVDKDKIKSK 244

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  L    +      +S  V + +     G  ++A+  G++   A  + GV   V +G+I
Sbjct: 245 VVELIPEKYKRDVLFVSVRVNEALLGFVKGRLLMAVFVGILTMIALLIIGVDFAVIIGLI 304

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           T +  +IP   P      +I   +  +   A    +      +  +  L P L+G  + L
Sbjct: 305 TCVADIIPYIGPFLGFVPAILFALIESPMKAVWAGIIFLAIQWAENNILAPKLLGDRVGL 364

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
             L     ++ G    G+LG+ +G  +++++ ++ +   +   E K +I+
Sbjct: 365 NPLVILLSIIIGGGMFGVLGMILGVPVVSIMMILIEFFKLKYNEKKAQIN 414


>gi|325694203|gb|EGD36119.1| permease [Streptococcus sanguinis SK150]
          Length = 392

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 122/337 (36%), Gaps = 8/337 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP-LLFLFYY 84
           FL     PV+ A ++ +   PI       K      +A+     ++   I+  L      
Sbjct: 52  FLGVIMLPVILAGLLYYLLNPIVDWMEKHKINR--LVAITIVFVLIAFLIIWGLAVAIPS 109

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
              ++   V  V    +      +++ D+     +++   +   +  +L      +  +N
Sbjct: 110 LQHQVMAFVRNVPAYLKQAD---KFIDDVVTKYISADFKPQIEEYTSNLSSQITDW-ASN 165

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
                  +A           ++II M   LF+  RDG ++   +       F A + ++ 
Sbjct: 166 FSSRAVNWAGNLISTTSQIIVAIIIMPFILFYLLRDGKNLKGYVTQFLPTKFRASFGQVM 225

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
             +   + +   G   +AI   L+    + + G+   V LGVI  ++ ++P  G+ ++  
Sbjct: 226 TDINSQLANYVRGQVTVAIIVALMFIVFFKIIGLRYGVTLGVIAGVLNLVPYLGSFLAML 285

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
                 LI G       + +   +E  I  + + P ++G  + +  +   F L+      
Sbjct: 286 PALAIGLIAGGPVMLAKVIVVFIVEQTIEGRFVSPLVLGSQLSIHPITILFVLLTSGTMF 345

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           G+ G+F+G    A   V         ++      ++F
Sbjct: 346 GIWGVFLGIPAYASAKVAIAAIFKWYQKVSGLYEADF 382


>gi|330718081|ref|ZP_08312681.1| integral membrane protein [Leuconostoc fallax KCTC 3537]
          Length = 342

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 115/325 (35%), Gaps = 16/325 (4%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS----TFLAVIATVSVMCLFIVPLLFL 81
           F+   F P++SA  + +   PI       K +          ++  +  + + ++ L  L
Sbjct: 7   FISTVFVPIVSAGFLYYVLKPILGLIEKIKIKGKAIPHRLAVIMTFLLFIGVIVLALALL 66

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E+  L++ +         + ++++++    W   L               +  +
Sbjct: 67  VPTLVKEISNLITALPAFVN---DLQKFVNELTAERWFRAL------DLNVNVDQIKGTV 117

Query: 142 KTNGIDFIPRFASRFG---MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                  +   AS  G          ++I+ + I LF+   DG  +   L          
Sbjct: 118 SKYAASVLTGTASTLGVVISTVTSVTINIVTIPIVLFYMLNDGDKLVPTLKKNFASRHAD 177

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             ++++  + + I     G  I  +  G+ +   Y + G P    L VI  I  ++P   
Sbjct: 178 NIEELTDKMDRTIERYISGQAIEMLFVGIAMAIGYLIIGQPYAWLLAVIAGITNIVPYIG 237

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P      ++ +    ++     + +   I   I    + P ++G  +K+  L     L+ 
Sbjct: 238 PWLGVIPALVVASTQSMQQVIFVIIVMTIVQQIDGNFIYPNVIGKSLKIHPLTIMILLMV 297

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWK 343
                G++G+ +   + A+I  I K
Sbjct: 298 AGNLWGIVGMILIVPVYAVIREIVK 322


>gi|220928624|ref|YP_002505533.1| hypothetical protein Ccel_1196 [Clostridium cellulolyticum H10]
 gi|219998952|gb|ACL75553.1| protein of unknown function UPF0118 [Clostridium cellulolyticum
           H10]
          Length = 349

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 57/353 (16%), Positives = 130/353 (36%), Gaps = 19/353 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGF--------FAPVLSALIIGFTSWPIYSSFISKKE 56
           M+N + I+ ++I+ ++L+       +          P   A +I +  +P+   F  K  
Sbjct: 1   MINTRKIIFYIILVLLLIGTAVFVYYYIDKLIKILLPFFIAALIAYIIYPLVIRFERK-G 59

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPG 115
              +   ++    +    I   +++    +   KEL   +  + + +       +S I  
Sbjct: 60  IKRSVSIILVYFFIALTLIFFGVYIMPEVLNNGKELFKTLPSITSSYREYFNNCISRIKA 119

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
             W  E+     +         + +        +   AS   ++     L+II  +I  +
Sbjct: 120 SKWPPEVKNLIFNEINYGSGFLQVYAARIIKKTLSVLASSLVIM-----LNIILSMIIAY 174

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           +F +D  ++      L             R +  +      G  + A+  G +     +L
Sbjct: 175 YFLKDAETLKNSALMLVPKKMRNDIINTGRELNAIATHFIQGQLMTALIVGTMETMGLYL 234

Query: 236 AGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
             V    ALG++  +  +IP  G  +         L++     A    ++  I +  +D 
Sbjct: 235 VRVKYPFALGLLGGVANIIPYFGPFLGAIPAIAVALLQSPYKAALAALVF--IVVQQIDN 292

Query: 295 -TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
             + P ++ G + L  + T   ++ G    G++G+ IG  + A++ VI K+ +
Sbjct: 293 AFISPKIIEGKLGLHPVTTIIAVLIGGEFFGIIGMLIGVPVTAMLKVILKKVV 345


>gi|114704853|ref|ZP_01437761.1| permease [Fulvimarina pelagi HTCC2506]
 gi|114539638|gb|EAU42758.1| permease [Fulvimarina pelagi HTCC2506]
          Length = 393

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 40/314 (12%), Positives = 103/314 (32%), Gaps = 9/314 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
            F+ ++ ++       P +  ++I +   P+   F  +   S      +  +  + LFI 
Sbjct: 19  AFLFVLVIWLFADILLPFVLGMVIAYLLDPVADWFERR-GLSRLMATTVILILFVFLFIS 77

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +L +      ++  L  ++                 P     +   +        L   
Sbjct: 78  AILIVVPVISSQVINLAERMPEYLDRLQGFAVAARSGPLAFLFTSEESTLEQDFAQLLSD 137

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           S +F+ +          +     F+++    +   +  F+   D   + +++D+      
Sbjct: 138 STSFVTSFLSSLWSSSLA-----FVNFVSLFVVTPVVAFYLLLDWDRMVKKVDTWLPREH 192

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               ++I+R +   +     G   + +  G        L G+   + +G+   +++ +P 
Sbjct: 193 QTTIRRIARDIDLSVAGFVRGQGSVCLILGSFYAVGLTLVGLNFGLLIGLFAGLISFVPY 252

Query: 257 GAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
              +    +SI + +     +      +     +  F     L+P LVG  + L  +   
Sbjct: 253 IGSLLGLVLSIGVALVQFWPDWPWIVAVAAVFFVGQFFEGNILQPKLVGASVGLHPVWLM 312

Query: 314 FGLVGGVRTMGLLG 327
           F L       G +G
Sbjct: 313 FALFAFGALFGFVG 326


>gi|238788116|ref|ZP_04631911.1| permease perM [Yersinia frederiksenii ATCC 33641]
 gi|238723703|gb|EEQ15348.1| permease perM [Yersinia frederiksenii ATCC 33641]
          Length = 354

 Score = 93.0 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 56/353 (15%), Positives = 122/353 (34%), Gaps = 18/353 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +PQ I   +I+ +    LYF  G  AP+L+A+++ +   WP     + +   S  
Sbjct: 10  RRRFADPQVIALLVILLVGFCILYFFSGILAPLLAAIVLAYLLEWPTAR--LQRVGCSRP 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           + A I  V    + ++ +  +      +   L+S           +P+ L+         
Sbjct: 68  WAASIVLVVFASIMLLAVFVVAPTVWQQGNNLIS----------DMPKMLNKFNAFAQTL 117

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGI--DFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                 L     + +++E          + + + +    +  L   + +I + + LFF  
Sbjct: 118 PARYPALVDAGIVDMMAENLRSKLSGMGESVVKISLASLIGLLTLAIYLILVPLMLFFLL 177

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D   +   +  +         +     + + I +   G  +  +  G+     +++ G+
Sbjct: 178 KDKEQMLNAVRRILPRNRGLAGQVWLE-MNQQITNYIRGKVLEMVVVGIATYLVFFVMGM 236

Query: 239 PSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTL 296
              + L V+     +IP  GA I    V +  L +  +      LF+   +   +    L
Sbjct: 237 NYALLLAVLVGFSVLIPYIGAVIVTIPVVLVALFQWGVGADFWTLFVAYLVVQGLDGNLL 296

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            P L    + L  L     ++      G  G+F    L  L+  +        
Sbjct: 297 VPVLFSEAVNLHPLVIILSVIIFGGMWGFWGVFFAIPLATLVKAVIHAWPEEF 349


>gi|163942329|ref|YP_001647213.1| sporulation integral membrane protein YtvI [Bacillus
           weihenstephanensis KBAB4]
 gi|163864526|gb|ABY45585.1| Sporulation integral membrane protein YtvI [Bacillus
           weihenstephanensis KBAB4]
          Length = 372

 Score = 93.0 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 58/351 (16%), Positives = 130/351 (37%), Gaps = 16/351 (4%)

Query: 11  IMRWMIMFIILV----SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           I+R M + +  V    +L ++ G   P + A    +   P+ +    K +       +++
Sbjct: 9   ILRLMFVIVATVVGFYALLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVS 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + V    +  + +L    +     L+  V +     +   +  +         +L +K 
Sbjct: 69  LILVFGAIVGLVTYLVTEAISATTYLLQIVTVKFPDIVAFAQQFALNHIMPLYDDLISKF 128

Query: 127 LSHPQSLKILSETFLKTNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFF 176
               +  +      ++  G +           I    + F          ++F+++A FF
Sbjct: 129 NHLGEPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFF 188

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
              D   ++ ++  L  +    Y K I   + K +         +     +++     + 
Sbjct: 189 ISYDWHRLAHKVRKLLPNRLHGYGKTIFVDLRKALFGFVKAQLTLVSMTTIIVLIGLLIL 248

Query: 237 GVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
            VP  + + +IT ++ ++P  G    F    IY+   G+   A  L +   + + +  + 
Sbjct: 249 RVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVI-VQRQI 307

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           + P ++   I L  L T   L  G +  G LGL IGPV++ L+  + K  +
Sbjct: 308 MEPKVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVILVLLNTLHKAHV 358


>gi|330903708|gb|EGH34280.1| hypothetical protein PSYJA_37244 [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 115

 Score = 93.0 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 60/113 (53%)

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + LG++T + ++IP G P+ +   + +L+ +G    A  L +WG   +  VD  L+P+L
Sbjct: 2   ALVLGILTFLFSLIPMGPPLVWLPATAWLVWQGEYGMAIFLGIWGMFIISGVDNVLKPYL 61

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +     LP +    G+ GG+   G +GLFIGP L+A+   +  + + + +   
Sbjct: 62  ISRGGNLPLVIVLLGVFGGLLAFGFIGLFIGPTLLAVAYSLLTDWVGSERARP 114


>gi|217965322|ref|YP_002351000.1| membrane protein YubA [Listeria monocytogenes HCC23]
 gi|217334592|gb|ACK40386.1| membrane protein YubA [Listeria monocytogenes HCC23]
 gi|307570122|emb|CAR83301.1| conserved hypothetical protein [Listeria monocytogenes L99]
          Length = 390

 Score = 93.0 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 124/336 (36%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI    +  LK   AP++ A I  +   PI       K +   +   +  + ++ L I
Sbjct: 37  IAFIFDPLMVILKTVAAPIILAGISYYLFNPIIDWLEKHKWKR-GWAIALLYLVIIGLII 95

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +   F+      ++  L                  S         ++  K  ++   +  
Sbjct: 96  LLFSFVIPAVKDQIVSLFKSFPGYWDQITQKFDEFSR---SSLFDQIKDKLNTNMSDIMK 152

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   +     I    S  G +  +  L+I+   + LF+  +DG  +   L  +    
Sbjct: 153 TLSTKGTSVINSAISSIGSIVGTVT-EVVLAIVTTPLVLFYLLKDGKKLPDFLLKMLPVN 211

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
             A+ +++       I S   G  I+++  G++L   Y + G+P  + L +I A  +++P
Sbjct: 212 GRAHTRQVLGEANHQISSYIRGQIIVSLCIGILLFIGYLIIGLPYALTLAIIAACTSIVP 271

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P      +I + I  + +    L +   +   +  K + P ++G  +K+  +   F 
Sbjct: 272 YLGPAIAITPAIIIAIVTSPWLLIKLIIVWCVVQLLEGKFISPQVMGKTLKVHPITILFV 331

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           ++      G+LG+       A++ VI     +  K 
Sbjct: 332 ILVAGNLFGVLGVIFAVPGYAVLKVIVTHVFIWFKR 367


>gi|261408709|ref|YP_003244950.1| sporulation integral membrane protein YtvI [Paenibacillus sp.
           Y412MC10]
 gi|261285172|gb|ACX67143.1| sporulation integral membrane protein YtvI [Paenibacillus sp.
           Y412MC10]
          Length = 372

 Score = 93.0 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 62/368 (16%), Positives = 128/368 (34%), Gaps = 20/368 (5%)

Query: 1   MRETMLNPQGIMRWMI--MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES 58
           M   ML   G   W++  +F+I   +Y L     P L A II +   P  +         
Sbjct: 1   MERLMLKRLGRGVWVLSSIFVIAYLIYVLLPLLYPFLLAWIIAYAMNPCVNLLQRSLRMP 60

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                 ++ +      ++ L       + E   L++     N H      WL+       
Sbjct: 61  RWIAVTLSLLLYFGAALLILTAAVSRLVKE---LIALSQSFNLHIDAWVEWLTAWTQNES 117

Query: 119 ASELWTKHLSHPQSLKILSETFLK--TNGIDFIPRFASRFGMIFLDYCLS---------- 166
              +  +     Q+     +T  +  T     I    +       +  L           
Sbjct: 118 FQNIVNEISRFYQNNPNYHDTINQNITRTTQTIGTAVTDLVTGIFNGILQIIYYLPNLGT 177

Query: 167 -IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
             I ++++ FF        ++ L  L   +       I   + K +        I+    
Sbjct: 178 IFIVVLLSTFFLSNSWERHNRALLRLLPDVIRKPMNYIFSDLKKALFGFARAQLILISIT 237

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLW 284
            +++    +  GV S  ++G++  ++ ++P  G  I     S+Y  +  ++     L + 
Sbjct: 238 AVIVTITLYALGVDSAFSIGLLIGLVDLLPYLGVGIVLIPWSLYAFMSDDLTLGIGLTVL 297

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +I L +V + + P ++   + L  L    G+  G++  G+LGL IGPV + ++    + 
Sbjct: 298 YSIIL-VVRQIMEPKVLASSVGLDPLAALLGMFVGLKLFGILGLIIGPVSLVILDAFHRA 356

Query: 345 SIMAIKEN 352
            +     N
Sbjct: 357 HVFKDLRN 364


>gi|20806564|ref|NP_621735.1| permease [Thermoanaerobacter tengcongensis MB4]
 gi|20515003|gb|AAM23339.1| predicted permease [Thermoanaerobacter tengcongensis MB4]
          Length = 354

 Score = 93.0 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 52/349 (14%), Positives = 127/349 (36%), Gaps = 6/349 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R   +  + ++   +  I  + ++ +  F  P + AL++     P  +    K +    
Sbjct: 6   LRYGDIIKKTLLIVAVFIIFYLIIFKIIPFLMPFVVALLLAVIIDPGVNFLEKKLKVPRG 65

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             + I  + ++ +    +       + E+  L     ++  +   +   + ++   +   
Sbjct: 66  LASFILLLILIGVIGSLIAISITQLIYELSSL---AEISTNYANTINDIILNLVDRIRMY 122

Query: 121 EL-WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            +    +++      + S     +     +  +   F     ++    +  ++A FF  +
Sbjct: 123 YISLPPNITSLIESNMQSILNYVSLFAKNLATWLLNFATKLPNFFFMTLITLVATFFISK 182

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D   I   +       +  + K I   + K        +  I +   L +     + G  
Sbjct: 183 DKQLILDFIKRQIPSHWAQHAKNIQVDLLKTFFGYLRAVATIMLITFLEVSIGLAIIGFD 242

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
               LG++  I+  +P  G+       ++Y +I  N      L +   + + +V + + P
Sbjct: 243 YPFLLGLLVTIVDALPVLGSGAVMVPWALYNIIMKNYMVGIYLLILYGLVV-VVRQMIEP 301

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            +VG  I L  L T   +  GV+  G +GL IGPV + +   + K  I+
Sbjct: 302 KIVGQSIGLHPLVTLLSMFIGVKLFGAIGLVIGPVFVVVFKALQKAEII 350


>gi|295397118|ref|ZP_06807227.1| possible permease [Aerococcus viridans ATCC 11563]
 gi|294974643|gb|EFG50361.1| possible permease [Aerococcus viridans ATCC 11563]
          Length = 353

 Score = 93.0 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 61/347 (17%), Positives = 130/347 (37%), Gaps = 12/347 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M+  M   + +    ++ + +V + +    L+    P + AL++ +   P     + K +
Sbjct: 1   MKIVMPEKKKLFDIGLVLLGIVIIAYIYNPLRNIINPFIYALVLAYLLNPA-VKLLEKNK 59

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
            +  +  +I  V +  LF +    L      +++  + ++    +    +   L    G 
Sbjct: 60  VNRIWAILIVFVLLFFLFSIAFATLIPRLTGDLRVFIDEIPNILKFIEKIVGELQS--GQ 117

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
           +       +   +           L+ +      RF S  G       L II   I  F+
Sbjct: 118 IPFIPEGVQEFLNLDEQIKNIGEVLRNSLRGVFNRFVSYTGT-----FLDIIITPIITFY 172

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
           + +D   I + +         A  K++   V KV+     G   +A   G++ G   W+ 
Sbjct: 173 YLKDKDRIMKAITGEIPVKRLAKAKELGGEVDKVLGGFIKGQLTVAGFVGILTGMGCWII 232

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           GVP  + +G++  I  +IP   P     + + L    +   A  + +   +   +    L
Sbjct: 233 GVPYSLTIGLVAGITNIIPYFGPWIGGVLPVILAFMESPIMALWVTMLIVVIQQVESAFL 292

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            P ++   + L  L   F ++     +G+LG+ IG  LM L+ +  +
Sbjct: 293 SPQIMSHSVGLHPLLVIFSVLFFGNMLGILGMIIGVPLMGLLKIALR 339


>gi|297625082|ref|YP_003706516.1| hypothetical protein Trad_2875 [Truepera radiovictrix DSM 17093]
 gi|297166262|gb|ADI15973.1| protein of unknown function UPF0118 [Truepera radiovictrix DSM
           17093]
          Length = 437

 Score = 93.0 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 58/369 (15%), Positives = 124/369 (33%), Gaps = 26/369 (7%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPV---LSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
            +   +++ +  +  YF + F   +   L   I+ +   P+ S     +      LA + 
Sbjct: 22  TVQLVLLIGVGFLLWYFYRTFSFALQTALIGFIVAYVLHPLVSGMRRLRIGR--GLATVI 79

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWT 124
               + L IV    L    + E+   V+ +  A     P+   +S+  +       E   
Sbjct: 80  VFFFLILLIVFGTVLLTSVVAELGRFVALIPGALDALGPLLARMSEFVLGWQERLPEFLA 139

Query: 125 KHLSHPQSLKILSETF-----------------LKTNGIDFIPRFASRFGMIFLDYCLSI 167
                      +++                   +    ++  P F        +   L  
Sbjct: 140 DRFGTGVDGVNIAQEVETRVLTLFDQATAGLVNVLQATLEQGPAFLLTGATGVVSTTLQA 199

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
             +++A  +F  D   I+          +  +++ +     + +     G  +IA+  G+
Sbjct: 200 FLILVASAYFLYDFPRITANFKRYVPVRYRPFYEDLGVKADRAVGGYLRGQLLIALVLGI 259

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           ++     LAGVP  +AL    AI  ++P  G  I     ++  L     F    L +   
Sbjct: 260 MIYIGLSLAGVPLALALSFFAAIFNLVPYLGPVIGTIPAALLGLTTDTPFTTAILAVVVF 319

Query: 287 IELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +    ++   L P ++     L  +     +  G+   GL+G       +ALI V+ +E 
Sbjct: 320 VIANQLEGNVLSPLILSKSTNLHPVTVLISITAGLGAFGLVGALFAVPTVALIKVLVEEY 379

Query: 346 IMAIKENKE 354
           ++      E
Sbjct: 380 VLRRPAYTE 388


>gi|256425309|ref|YP_003125962.1| hypothetical protein Cpin_6357 [Chitinophaga pinensis DSM 2588]
 gi|256040217|gb|ACU63761.1| protein of unknown function UPF0118 [Chitinophaga pinensis DSM
           2588]
          Length = 363

 Score = 93.0 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 58/346 (16%), Positives = 130/346 (37%), Gaps = 16/346 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M             MI+ ++++ L + K FF P+  A ++     P+     +K   +  
Sbjct: 1   MIYRTKAINAAAILMILTLVVLILVYGKPFFVPIAFAGLLAMLLLPVSKWLCTKGINN-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               +A +  + LF+  L+ +  +   ++ ++        Q  +   + L       W S
Sbjct: 59  ---AVAILLSLLLFVGFLVLVVLFVSWQVSDIAENASQLEQQMMEKYQQLRG-----WLS 110

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             +         +    +          +    S FG    D+ L ++++ +  FF    
Sbjct: 111 TEYGISQEKQAQMLKEQQESSAGKASSVLTGIISGFGGFLTDFLLVLVYVFLFTFF---- 166

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   +  L  H              +  +    G+ ++ I   ++ G  + + GV +
Sbjct: 167 RGRIKGFIVRLVPHSEKEKAVACMHKTQETAQQYLKGLLLMIIFLWVMYGIGFTIVGVKN 226

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
                ++  ++ +IP    ++ TA+++   L+  G++   T + +   +  FI    L P
Sbjct: 227 AFFFAILCGLLEIIPFVGNLTGTALTLLMSLVQGGDMTLVTGILITYGLVQFIQSYLLEP 286

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +VG  + +  + T  GLV G    G+ G+ +   LM ++ VI+  
Sbjct: 287 LVVGSGVDINPMATIVGLVAGELLWGIPGMVMAIPLMGMMKVIFDH 332


>gi|58580922|ref|YP_199938.1| permease [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84622857|ref|YP_450229.1| permease [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188578098|ref|YP_001915027.1| permease [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58425516|gb|AAW74553.1| permease [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84366797|dbj|BAE67955.1| permease [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188522550|gb|ACD60495.1| permease [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 388

 Score = 93.0 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 51/330 (15%), Positives = 127/330 (38%), Gaps = 12/330 (3%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           +L  +  L     P + AL++ +   P+          S     ++  V    LF++ L+
Sbjct: 25  VLWVISLLAPILTPFVLALLLAWLGDPLVDRIERA-GRSRNAAVMLVFVLATLLFVLALM 83

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            L      ++  L+  +       I      + IP     + +       P+ L     +
Sbjct: 84  ILVPMIERQIMTLIEALPQMRNWAIG-----TAIPWLEAKTGMQLMAWLDPERLIDWIRS 138

Query: 140 FLKTNGI--DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
             +  G     +  + SR G   +++ +++  + I  F+F RD   + ++  ++    + 
Sbjct: 139 HWEQAGGVAKTLFGYVSRSGFAMVNWVINLALLPILAFYFLRDWDRLVERGAAVVPRAYI 198

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-- 255
               +++R    V+     G  ++ +  G +  +   + G+   + +G+I  +++ IP  
Sbjct: 199 GTVSRLARESNDVLGGFIRGQFLVMLALGAIYATGMSIIGLNLGLLIGIIAGLISFIPYL 258

Query: 256 -GGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
                I    ++  +  +G ++     + +   +   +    L P +VG  I L  +   
Sbjct: 259 GATTGIVLALLAAIVQAQGLDLKLLIGVGVVFTVGQLLESYVLTPRIVGDKIGLHPVAVI 318

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           F ++ G +  G LG+ +   + A+  V+ +
Sbjct: 319 FAVMAGGQLFGFLGMLLALPVAAVANVLLR 348


>gi|228477392|ref|ZP_04062028.1| transport protein [Streptococcus salivarius SK126]
 gi|228250827|gb|EEK10015.1| transport protein [Streptococcus salivarius SK126]
          Length = 392

 Score = 92.6 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 52/360 (14%), Positives = 130/360 (36%), Gaps = 19/360 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYF---LKGFFAPVL-------SALIIGFTSWPI---YSSF 51
           +LN Q ++ + I+ +I +++     +   F+PV+         L+I    + +       
Sbjct: 18  ILNNQAVVAFFILLLIGLTVLIFTKISPIFSPVIQFMTIIMLPLVISMLLYYLIKPLVLL 77

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS 111
           + +   + T   ++    +  L +  +         ++  L+                  
Sbjct: 78  VERTGLNRTMSILVIYAILGLLLVWGISTAIPSLQNQILILIRNAPSYIARANSETERWI 137

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
           ++P            LS   +  +       ++ + ++  FAS    +     ++II   
Sbjct: 138 NLPILSNFHGDLESMLSDFSARMVNYAENFSSSALTWVGTFASTVARVT----VAIILAP 193

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
             LF+  RD   +     S     F     ++   +   +     G   +AI   ++   
Sbjct: 194 FILFYLLRDSQKMKHSFVSALPTRFRETTVRMLSDINSQLEGYVQGQVTVAIVVAIMFCI 253

Query: 232 AYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
            + + G+   +  G++   + M+P  G+ ++   V I  L++G       + +   IE  
Sbjct: 254 MFKIVGLRYGMTFGIMAGFLNMVPYLGSFLAMVPVVIMGLVQG-PAMLIKVLIIFVIEQT 312

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           I  + + P ++G  + +  +   F L+      G+ G+ +G  + A + V+ +E     +
Sbjct: 313 IEGRFVSPLVLGNKLSIHPITIMFILLTAGSLYGVWGVLLGIPIYASVKVVIREIFDWYR 372


>gi|116618937|ref|YP_819308.1| permease [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116097784|gb|ABJ62935.1| Predicted permease [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
          Length = 369

 Score = 92.6 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 122/336 (36%), Gaps = 10/336 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST----FLAVIATVSVMCLFIVPLLFL 81
           F+   F P++ A  + +   P+ +       +          +I  V  + +    L+ L
Sbjct: 40  FISTVFVPLIVAGSLYYVLKPVLTLLKKITVKGHKMPHQLAVIITFVLFLAVIAGSLILL 99

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E+  L++ +    Q+   V R+++D     W S L   +LS        +    
Sbjct: 100 IPTLVAEITNLITALPEFAQN---VQRFVTDSLQSKWLSNL---NLSIDIDEVKSAVGKY 153

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             + +            +     ++++ + + LF+   DG  +   +  L    F    K
Sbjct: 154 SASFLTITAGTLGSAVSMVTSVTINVVTIPVVLFYMLSDGDRLLPAIQKLFPVRFADNVK 213

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +++  + K I     G  +  +  G+ +   Y + G P    LGVI  I  ++P   P  
Sbjct: 214 ELTLKMDKTIERYISGQALEMLFVGMTMAVGYLIIGEPYAWLLGVIAGITNIVPYIGPWI 273

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               ++ +    +      + +   +   +    + P ++G  +++  L     L+    
Sbjct: 274 GVIPALIVASTQSWKQMLLVMIVMMVVQQLDGNFIYPNVIGKSLQIHPLTIMILLMVAGN 333

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
             G+ G+ +   + A+   + K +I   +  KE + 
Sbjct: 334 LWGIFGMILIVPMYAVARTVVKFAIEMRQLTKESLE 369


>gi|55823064|ref|YP_141505.1| hypothetical protein str1142 [Streptococcus thermophilus CNRZ1066]
 gi|55739049|gb|AAV62690.1| conserved hypothetical protein [Streptococcus thermophilus
           CNRZ1066]
          Length = 392

 Score = 92.6 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 57/360 (15%), Positives = 128/360 (35%), Gaps = 19/360 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYF----------LKGFFAPVLSALIIGFTSWPI---YSSF 51
           +LN Q ++ ++I+ +I +++            +  F   ++  L+I    + +       
Sbjct: 18  ILNNQAVVSFLILLLIGLTVLIFTKISPIFSPVIQFLTIIMLPLVISMLLYYLIKPLVLL 77

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS 111
           + K     T   ++    +  L +  +         ++  L+                  
Sbjct: 78  VEKIGLDRTMAILVIYAILALLLVWGISTAIPNLQDQILILLRNAPSYISRANSETERWL 137

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
            +P            LS   +  +       T+ + +I  FAS    +     ++II   
Sbjct: 138 KLPILSNFHGNLEAMLSDFSARMVNYAENFSTSALSWIGTFASTVARVT----VAIILTP 193

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
             LF+  RD   +     S     F     ++   +   +     G   +AI   ++   
Sbjct: 194 FILFYLLRDSQKLKHSFVSALPTRFRETTVRMLSDINNQLEGYVRGQVTVAIVIAIMFCI 253

Query: 232 AYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
            + + G+   +  G++   + MIP  G+ I+   V I  L++G       L ++  IE  
Sbjct: 254 MFKIVGLRYGMTFGILAGFLNMIPYLGSFIAMVPVVIMGLVQGPTMLIKVLIIF-VIEQT 312

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           I  + + P ++G  + +  +   F L+      G+ G+ +G  + A + VI K+     +
Sbjct: 313 IEGRFVSPLVLGNKLSIHPITIMFILLTAGSLYGVWGVLLGIPIYASVKVIVKDIFDWYR 372


>gi|322411995|gb|EFY02903.1| hypothetical protein SDD27957_06325 [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 393

 Score = 92.6 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 59/337 (17%), Positives = 125/337 (37%), Gaps = 7/337 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + F      P++ + I+ + + P+    I+    S T    I    ++ LF+
Sbjct: 43  ISFLFTPVISFFAVIMLPLVISTILYYLTKPLVD-LINHLGPSRTTSIFIVFGLIILLFV 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +         ++   +  +             L +    +         L++     +
Sbjct: 102 WAISGFVPMVQTQLTSFIEDLPKYVGKVNNEANKLLENEWLVSYKPQLQDMLANTSQKAL 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   N ID+   FA     I     ++II     LF+F RD   +   L ++    
Sbjct: 162 DYAQSFSKNAIDWAGNFAGAIARIT----VAIIISPFILFYFLRDSGKMKNGLVNVLPIK 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   + K +     G   +AI  G +    + L G+   +  G+I   + MIP
Sbjct: 218 LRVPMARVLGDINKQLSGYVQGQVTVAIVVGFMFSIMFSLVGLKYSITFGIIAGFLNMIP 277

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G+ ++   V I  +++G +     L ++  IE  I  + + P ++G  + +  +   F
Sbjct: 278 YLGSFLAMIPVIIMAMVQGPLMLVKVLVIF-MIEQTIEGRFVAPLVLGNKLSIHPITIMF 336

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            L+      G+ G+F+   + A + V+ KE     ++
Sbjct: 337 LLLTAGSMFGVWGVFLVIPIYASVKVVVKELFDWYQK 373


>gi|254481300|ref|ZP_05094545.1| conserved domain protein, putative [marine gamma proteobacterium
           HTCC2148]
 gi|214038463|gb|EEB79125.1| conserved domain protein, putative [marine gamma proteobacterium
           HTCC2148]
          Length = 360

 Score = 92.6 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 55/346 (15%), Positives = 125/346 (36%), Gaps = 15/346 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I V+LY L+   +P +   +I +   P+     S+     T    I  +    +
Sbjct: 19  IALAAVICVALYLLQPILSPFVLGGLIAYLGDPLVDRLESRGVGR-TLGVAIVFLLFSAI 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVL----ANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
             + ++F     + ++  L+SKV        Q  +P  +    IP        W+  L+ 
Sbjct: 78  ITLAIIFALPMLLHQLDALISKVPEIYRWLTQDALPWLQQRLAIPERRLPQVDWSGQLAD 137

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                      +       + R     G   L    ++  + +  F+  RD   +  +  
Sbjct: 138 NWQS-------VGKFTAQSLKRITGS-GANLLLSLANLALVPVVAFYLMRDWNLLLDKAL 189

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +    +     +++    +V+ +   G  ++    G +  +  WL G+   + LG+I  
Sbjct: 190 GIVPLSWQQRTSELAGEADEVVGAFLRGQFLVMCALGAIYSAGLWLVGLQLAMLLGLIAG 249

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--DKTLRPFLVGGPIKL 307
           + +++P    +     S+             L++     +        L P LVG  I L
Sbjct: 250 LSSIVPYLGFMVGIVASLIAAYAQFNDWTMLLWVVLVFGVGQAVESMLLTPILVGDRIGL 309

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             +   F L+ G +  G +G+ +   + A+I V  + ++   + ++
Sbjct: 310 HPVAVIFVLMAGAQVAGFVGVVLALPVGAVIMVFLRHALQHYRSSE 355


>gi|330966589|gb|EGH66849.1| permease [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 357

 Score = 92.6 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 55/334 (16%), Positives = 129/334 (38%), Gaps = 14/334 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +++  +  L     P L AL++ +   P+                   T+SV+ +F +
Sbjct: 13  LALLIAFVVLLHTILTPFLVALLLAYMGDPLVDRLERAGLSR--------TLSVVAVFGL 64

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLK 134
             L L    ++ +  L  ++    +    +  WL    +P       L        +   
Sbjct: 65  FTLVLMTLLLVLVPMLAKQLFRLYELAPQILDWLQHSAMPWVQAKFGLADGFWKFDKIKA 124

Query: 135 ILSETFLKT-NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            +SE   +  + +  +   A+  G+  + +  +++ + +  F+  RD   +  ++  L  
Sbjct: 125 AISEHMGQAGDIVSIVLSQATASGLALIGWLTNLVLIPVVCFYLLRDWDLMMGKVRGLLP 184

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
               +   K++    +V+ +   G  ++ +G G++  +   L G+   + +GVI  + A+
Sbjct: 185 RQRESQIVKLAGECHEVLGAFIRGQLLVMVGLGVIYAAGLMLVGLELGLLIGVIAGLAAI 244

Query: 254 IPGGAPISFTA---VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +P    +       V+      G+++    +F    I   +    L P LVG  I L  +
Sbjct: 245 VPYMGFVIGIGSALVAGLFQFGGDLYPMMGIFAVFMIGQALEGMVLTPLLVGDRIGLHPV 304

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              F ++ G    G  G+ +   + A+I V+ + 
Sbjct: 305 AVIFAILAGGELFGFTGILLALPVAAVIMVLVRH 338


>gi|284048848|ref|YP_003399187.1| protein of unknown function UPF0118 [Acidaminococcus fermentans DSM
           20731]
 gi|283953069|gb|ADB47872.1| protein of unknown function UPF0118 [Acidaminococcus fermentans DSM
           20731]
          Length = 356

 Score = 92.6 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 53/349 (15%), Positives = 127/349 (36%), Gaps = 5/349 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++ +   +   + Y L  +F PV  A+ + F  +PI       K +   F   +A +  
Sbjct: 12  VIKLLFGLLGFGAFYLLGHWFLPVFLAIGMSFLLYPIVDRLERLKIKGRAFPNTLAVLIA 71

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             LF + L       ++ +   V+ ++ A             +  G  A +L        
Sbjct: 72  FLLFGLFLYAAANVLIVPLVTQVNTLLKAMPGLAAKANESISLFLGSEAQKLPPNTRDML 131

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           Q       T++     D +               +S+  +    F+F +D  ++ + +  
Sbjct: 132 QQAGSSLSTYVMGLLKDMLASTVQAA-----KSLVSLALVPFLSFYFLKDWRTLKKMVVG 186

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L  +       ++   + +++ +    M  +       L +   + GV   + LG +  I
Sbjct: 187 LFAYEKQPLADRVLSDMGRILCAYVDNMFKLCFVAAACLTAGNSILGVQYTLVLGFLAMI 246

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             +IP    +  T  ++++ +      A  + +   +   +  + + P L+G  I L  +
Sbjct: 247 SELIPLVGSVVGTLSAVFIALLQKPSLALKVLVLYLVYYQVDAQVIMPNLMGHSITLHPV 306

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                ++ G +  G+ GL     ++++I V++     A +E    +  N
Sbjct: 307 LIILAVMVGGQIGGVAGLIFAVPVLSIIKVLYGYFWHAGEECPGSVDKN 355


>gi|293374565|ref|ZP_06620884.1| putative membrane protein [Turicibacter sanguinis PC909]
 gi|325845421|ref|ZP_08168715.1| putative membrane protein [Turicibacter sp. HGF1]
 gi|292646814|gb|EFF64805.1| putative membrane protein [Turicibacter sanguinis PC909]
 gi|325488553|gb|EGC90968.1| putative membrane protein [Turicibacter sp. HGF1]
          Length = 376

 Score = 92.6 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 55/309 (17%), Positives = 116/309 (37%), Gaps = 4/309 (1%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
            +P L A II +   P+      + +        +     + L  + + F+F        
Sbjct: 45  LSPFLLAFIIAYIFNPVMMFIEKRFKVKRNLSLSLTYFGFLLLCYLMISFIFPVIYHSAS 104

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE-TFLKTNGIDFI 149
           +L+ ++         +  W++     M   +    +    Q L ++ + T + T+ I  +
Sbjct: 105 DLIKQIPSYATE---IQTWINGWTNQMSGFDFGELNEFKTQLLSMIPKVTEILTSSIGSL 161

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                    +  +  L+ I  I  L    +      + +  +       Y  + SR+  +
Sbjct: 162 VSITYGAVTLTGNVLLAFIISIYILVEKEKFTEMSKKLIYIIFRPKNAGYILQTSRLFHE 221

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            I    +G +I +I  G+       L G    V LGVI  +  M+P   PI  T +++ +
Sbjct: 222 NIGKYLIGKSIDSIFVGICATIGLALMGAKYAVLLGVIFGLTNMVPFVGPIFGTLIAVGI 281

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            +  N   A    ++  I   +    + P +VG  + L    T   +  G + MG++G+ 
Sbjct: 282 NLFYNPIVAIIALIFLLIVQQVESLIIDPKVVGQKMGLNPFFTLLAVTVGGKLMGIVGMI 341

Query: 330 IGPVLMALI 338
           +G  +M ++
Sbjct: 342 LGVPIMGVL 350


>gi|115379270|ref|ZP_01466383.1| permease [Stigmatella aurantiaca DW4/3-1]
 gi|310823540|ref|YP_003955898.1| hypothetical protein STAUR_6314 [Stigmatella aurantiaca DW4/3-1]
 gi|115363711|gb|EAU62833.1| permease [Stigmatella aurantiaca DW4/3-1]
 gi|309396612|gb|ADO74071.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 395

 Score = 92.6 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 53/367 (14%), Positives = 113/367 (30%), Gaps = 34/367 (9%)

Query: 18  FIILVSLYF--------LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            IIL  L+          +    P   A +I +   P+ +     +         +A + 
Sbjct: 17  LIILACLWVSIAGVLIAFRSVVMPFAGAALIAYLVQPLVARITRWRVAGRPVPRWVAILL 76

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVL-------------ANQHGIPVPRWLSD--IP 114
           +  LF V +   F   + ++   ++++                         WL    +P
Sbjct: 77  IYALFFVGVYLFFIALVPQLYRELARISRDGLAFANSLTPEYVQSLAHRAEEWLGGYGLP 136

Query: 115 GGMWASEL-----------WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY 163
             +    L           +   L       +   T L    +  I   +       L  
Sbjct: 137 VALSNRALEGADPSPGGFGFEVDLGQLLKDAVERLTGLLQENLGNIVNVSKSIIAGVLAS 196

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
              + F+++   FF  D  +I +   +L    + A    +   + + +     G   I +
Sbjct: 197 VFMLFFILMVAAFFSIDAHAILRYFSTLIPADYAADAALLLERIDRSLSGVVRGQVTICL 256

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
             G +      + GV     L  I  + ++IP    I  +   + + +         + L
Sbjct: 257 VNGALTAIGLLVFGVKFAFLLATIATLFSLIPIFGTIISSVPIVLIALAEGFQKGLAILL 316

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           W      +    L P ++G   ++  +   F L+ G R  GL+G      + AL    + 
Sbjct: 317 WIIGIHALEAYFLNPKIMGQAARIHPVIVAFSLIAGERLYGLVGALFAVPVAALFVACFD 376

Query: 344 ESIMAIK 350
            + +  +
Sbjct: 377 YARLKAQ 383


>gi|119384045|ref|YP_915101.1| hypothetical protein Pden_1300 [Paracoccus denitrificans PD1222]
 gi|119373812|gb|ABL69405.1| protein of unknown function UPF0118 [Paracoccus denitrificans
           PD1222]
          Length = 434

 Score = 92.6 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 52/326 (15%), Positives = 111/326 (34%), Gaps = 16/326 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P +    + +   P+      +   S T   VI T+  + L +   L L    + +  
Sbjct: 30  VTPFIMGAAVAYLFDPLADRLE-RLSLSRTAAVVILTLCGLLLVVALFLLLVPVLVRQTT 88

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L+       Q        ++  P            L++           +   G   + 
Sbjct: 89  ALIETAPEMLQQLQQFL--MTRFPEIFTEGNPVNTALTNMG-------QQISERGGQLVS 139

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                  M  +   + I+ + +  F+   D  ++  +LD L         +++   +   
Sbjct: 140 TVLGSV-MGVVSMVMLIVIVPVVAFYLLLDWDNMVDRLDDLLPREHAGTIRRLGHEIDAA 198

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP----GGAPISFTAVS 266
           +     G  ++ +  G        L G+P  VA+GVI A ++ IP        ++   V+
Sbjct: 199 LSGFVRGQGMVILILGTFYSVCLGLIGLPFGVAIGVIAASLSFIPYVGVVIGGVTAIGVA 258

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           ++      ++    + ++  I        L+P +VGG + L  +     L       G +
Sbjct: 259 LFSFWGEPVWIGAVIAVF-VIGQVAEGNYLQPKIVGGHVGLHPVWLMLALTVFGTLFGFV 317

Query: 327 GLFIGPVLMALIAVIWKESIMAIKEN 352
           GL I     A + V+ + ++   KE+
Sbjct: 318 GLLIAVPAAAALGVLVRFAVARYKES 343


>gi|195978343|ref|YP_002123587.1| hypothetical protein Sez_1234 [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195975048|gb|ACG62574.1| hypothetical protein Sez_1234 [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 393

 Score = 92.6 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 64/337 (18%), Positives = 126/337 (37%), Gaps = 7/337 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    L FL     P++ + I+ + + P+    + K   + T    I    V+ LF 
Sbjct: 43  ISFLFTPILSFLTIIMLPLVISTILYYLTKPLVD-MVEKLGPNRTASIFIVFGLVILLFF 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +         +++  V  +             L +    +         L+      +
Sbjct: 102 WAISGFIPMIQDQLRSFVEDLPKYVAKVNLEANKLLENEWLVSYRSNLQDMLTSMSQKAL 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   N ID+   FA     I     ++II     LF+F RD   +   L ++    
Sbjct: 162 DYAQSFSKNAIDWAGNFAGAIARIT----VAIIMSPFILFYFLRDSGHMKNGLVNVLPIK 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   + K +     G   +AI  GL+    + L G+   +  G+I   + MIP
Sbjct: 218 LRQPMARVLGEINKQLSGYVQGQVTVAIVVGLMFSVMFSLVGLNYSITFGIIAGFLNMIP 277

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G+ ++   V I  +++G +     L ++  IE  I  + + P ++G  + +  +   F
Sbjct: 278 YLGSFLAMIPVVIMGMVQGPLMLIKVLIIF-VIEQTIEGRFVAPLVLGNKLSIHPITIMF 336

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            L+      G+ G+F+   + A + V+ KE     K+
Sbjct: 337 LLLTAGSMFGVWGVFLVIPVYASVKVVVKELFDWYKD 373


>gi|307701966|ref|ZP_07638974.1| transport protein [Streptococcus mitis NCTC 12261]
 gi|307616611|gb|EFN95800.1| transport protein [Streptococcus mitis NCTC 12261]
          Length = 388

 Score = 92.6 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 114/335 (34%), Gaps = 5/335 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    L FL     PV+ + ++ +   PI       K         I  V +    I
Sbjct: 42  ISFLFSPVLDFLAVVMLPVILSGLLYYLLNPIVDWMEKHKVNR-VIAISIVFVIIALFII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      V +  +    V   L              + L++  S   
Sbjct: 101 WGLAVAIPNLQRQVLTFARNVPIYLEDADRVIDDLVTKRLPDDFRPQLEQVLTNFSSQAT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +  + + +  ++++  F S    +     +++I +   LF+  RDG  +   L       
Sbjct: 161 VWASKVSSQAVNWVSAFISGASQV----IVALIIVPFMLFYLLRDGKGLRHYLTQFMPTK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   V + + +   G   +AI   ++    + + G+   V LGV   I+ ++P
Sbjct: 217 LKEPVGQVLSDVNQQLSNYVRGQVTVAIIVAVMFMIFFKIIGLRYAVTLGVTAGILNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPVMLLKVVIVFIVEQTIEGRFVSPLILGSQLNIHPINVLFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+      G+ G+ +G  + A   V+        K
Sbjct: 337 LLTSGSMFGIWGVLLGIPVYASAKVVISAIFEWYK 371


>gi|227431381|ref|ZP_03913432.1| permease [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
 gi|227352844|gb|EEJ43019.1| permease [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
          Length = 369

 Score = 92.6 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 122/336 (36%), Gaps = 10/336 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST----FLAVIATVSVMCLFIVPLLFL 81
           F+   F P++ A  + +   P+ +       +          +I  V  + +    L+ L
Sbjct: 40  FISTVFVPLIVAGFLYYVLKPVLTLLKKITVKGHKIPHQLAVIITFVLFLAVIAGSLILL 99

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E+  L++ +    Q+   V R+++D     W S L   +LS        +    
Sbjct: 100 IPTLVAEITNLITALPEFAQN---VQRFVTDSLQSKWLSNL---NLSIDIDEVKSAVGKY 153

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             + +            +     ++++ + + LF+   DG  +   +  L    F    K
Sbjct: 154 SASFLTITAGTLGSAVSMVTSVTINVVTIPVVLFYMLSDGDRLLPAIQKLFPVRFADNVK 213

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +++  + K I     G  +  +  G+ +   Y + G P    LGVI  I  ++P   P  
Sbjct: 214 ELTLKMDKTIERYISGQALEMLFVGMTMAVGYLIIGEPYAWLLGVIAGITNIVPYIGPWI 273

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               ++ +    +      + +   +   +    + P ++G  +++  L     L+    
Sbjct: 274 GVIPALIVASTQSWKQMLLVMIVMMVVQQLDGNFIYPNVIGKSLQIHPLTIMILLMVAGN 333

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
             G+ G+ +   + A+   + K +I   +  KE + 
Sbjct: 334 LWGIFGMILIVPMYAVARTVVKFAIEMRQLTKESLE 369


>gi|228921575|ref|ZP_04084896.1| hypothetical protein bthur0011_25770 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228838092|gb|EEM83412.1| hypothetical protein bthur0011_25770 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 264

 Score = 92.6 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 95/247 (38%), Gaps = 1/247 (0%)

Query: 109 WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII 168
           ++ ++        L T++    ++++  +  +LK +  + I   A+    I  +  L + 
Sbjct: 17  YIQELSHHRLFEWLSTQNYVSIETIEKNAIEYLK-DIPNTITSSATALFGIITNVALVVF 75

Query: 169 FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLV 228
            +   LF+ ++DG +   +  SL    +     +I +   + + +   G  ++ I  G  
Sbjct: 76  TVPFILFYMFKDGHAFPGKAVSLLPESYREEGLRIIKETNETLSAYIQGQALVCIFVGAF 135

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
               Y +  +P    LG+I A   +IP   P    A ++ + +  +   A  + +   I 
Sbjct: 136 TFIGYLIIDLPYAFVLGIIAAFTNIIPNLGPFIGAAPAVIVGLFVSPMQALYVIIIVTIV 195

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
                  + P ++   + +  L     ++G     G++G+ +   + A+   +    +  
Sbjct: 196 QQFESNIISPRIMSSKLNIHPLTIIILILGVGNFAGIIGMILAVPVYAVTKTVVSNLVRL 255

Query: 349 IKENKEK 355
            K  +  
Sbjct: 256 FKTKRSN 262


>gi|297583809|ref|YP_003699589.1| hypothetical protein Bsel_1511 [Bacillus selenitireducens MLS10]
 gi|297142266|gb|ADH99023.1| protein of unknown function UPF0118 [Bacillus selenitireducens
           MLS10]
          Length = 367

 Score = 92.6 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 51/311 (16%), Positives = 113/311 (36%), Gaps = 4/311 (1%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P L A ++ +   P+ +     K      + +I    +  +  + +  +      ++ 
Sbjct: 41  FLPFLLAGVLFYLLRPVVNLMERFKVPRVVSILLIYIAGIGLMTFI-VFLIGPTLQEQVM 99

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            LV    +  +    V + + +I    W  + +    +        +         DF+ 
Sbjct: 100 NLVDNAPMLFEE---VRKLIINIENNPWVQDQFQPSETFSIENLTENIADYMAAAFDFLG 156

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              + F      + L II +   LFF  +DG     Q+            K+I   +   
Sbjct: 157 NNIAGFIGAVTSFVLVIIVLPFILFFLLKDGDKAPDQVLRFLPEKQQVEGKRILSDMDSK 216

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G  I+++  G ++  +Y + GV   + L +   +  ++P   P   T  ++ + 
Sbjct: 217 LSSYIQGQLIVSLFVGTLMYISYLIIGVDYSLILALFAMVTNVVPFVGPWIGTIPAVIVA 276

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +  +      + +   I   I    + P ++G  +K+  L     ++   R  GL+GL +
Sbjct: 277 VIDSWVTMLWVIVAIVIVQQIESNLISPNVMGKKLKVHPLTIIVLILVAGRFGGLIGLIL 336

Query: 331 GPVLMALIAVI 341
              L A+  V+
Sbjct: 337 AVPLYAVTKVV 347


>gi|332162580|ref|YP_004299157.1| hypothetical protein YE105_C2960 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606680|emb|CBY28178.1| putative permease PerM (=YfgO) [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325666810|gb|ADZ43454.1| hypothetical protein YE105_C2960 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 354

 Score = 92.6 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 58/358 (16%), Positives = 124/358 (34%), Gaps = 18/358 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +PQ I   +I+      LYF  G  AP+L+A+++ +   WP     + +   S  
Sbjct: 10  RRRFTDPQVIALLVILLAGFCILYFFSGILAPLLAAIVLAYLLEWPTAR--LQRIGCSRP 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           + A I  V    + ++ +  +      +   L+S           +P+ L+         
Sbjct: 68  WAASIVLVVFGGIALLAVFVVAPTVWQQGNNLLS----------DMPKMLNKFNAFAQTL 117

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGI--DFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                 L     + +++E          + + +F+    +  L   + +I + + LFF  
Sbjct: 118 PARYPALVDAGIVDMMAENLRSKLSGMGESVVKFSLASLIGLLTLAIYLILVPLMLFFLL 177

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D   +   +  +         +     + + I +   G  +  +  G+     +++ G+
Sbjct: 178 KDKEQMLNAVRRILPRNRGLAGQVWLE-MNQQITNYIRGKVLEMVVVGVATYLVFFVLGM 236

Query: 239 PSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTL 296
              + L V+     +IP  GA I    V +  L +  I      LF+   +   +    L
Sbjct: 237 NYALLLAVLVGFSVLIPYIGAVIVTIPVVLVALFQWGIGADFWTLFVAYLVVQGLDGNLL 296

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            P L    + L  L     ++      G  G+F    L  L+  +          + +
Sbjct: 297 VPVLFSEAVNLHPLVIILSVIIFGGMWGFWGVFFAIPLATLVKAVIHAWPEEFIPDAD 354


>gi|116872311|ref|YP_849092.1| hypothetical protein lwe0893 [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741189|emb|CAK20311.1| putative membrane protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 378

 Score = 92.6 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 122/340 (35%), Gaps = 14/340 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           + +    ++FI+L   Y            F P+L A  + +   P+      +K      
Sbjct: 17  EILAVVAVLFILLQMKYIFSPIGIIISTLFMPILVAGFLFYLFNPLVLFLEKRKVPR-LL 75

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++  ++ + L ++ ++ L      ++ EL   +    Q      +WL  +      S 
Sbjct: 76  SVILIFIAFIALIVLAVMQLGPTLADQVAELAKAIPGYWQ---DFEKWLESL---SHNSA 129

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L +  +    +   +S   + +   D +             + + ++ +   +F+ ++DG
Sbjct: 130 LQSVDIKAELAKLNISLPKIMSVVFDGVASSFGAIFSFISGFVMILVTVPFIVFYMFKDG 189

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               +           +  K+I + + K I +      I  +  GL     Y + G P  
Sbjct: 190 HKFVESSGKFFPAGIRSEAKQIIKEMNKTISTYISSQAIDCMFVGLFTFIGYLIIGQPYA 249

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +  G I     +IP   P    A ++ + +  +   A  + +   I   I    L P+++
Sbjct: 250 LLFGFIAGATNIIPYLGPFLGAAPAVIVALFTSPLQALLVIVVVTIVQQIDSNLLSPYIM 309

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           G  + +  L     L+      G+ G+ +G  L A++  I
Sbjct: 310 GKSLSIHPLTIIIILIVAGNLAGIFGMILGVPLYAVVKTI 349


>gi|167462972|ref|ZP_02328061.1| hypothetical protein Plarl_10482 [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 378

 Score = 92.6 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 52/326 (15%), Positives = 122/326 (37%), Gaps = 5/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI +     +K    P++ A I  +   PI       K       ++I    V+   +
Sbjct: 40  ISFIFVPIGIIVKTVMLPLILAGIAFYLLNPIVDLLERHKINR--IYSIIGLFLVIIGVV 97

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L+   +  + +  ++++ V    ++G  V    ++  G     +   K  +    +  
Sbjct: 98  TILILTVFPFVKD--QVLNLVDNLPKYGQQVAEKFNEFAGTSLFHQFNDKLNNVSTDIMN 155

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                      +     +   G +  +  L+I  +   LF+  +DG  + + + ++    
Sbjct: 156 YISEKSSVILQNAWASVSGVVGTVT-EIVLAIATLPFILFYLLKDGRKLPRFILNMLPVK 214

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
              +  ++   +   I S   G  I++   G +L   Y + G+   + L +I ++ +++P
Sbjct: 215 TREHTYQMMYEMHHQISSYIRGQIIVSFCIGFLLFVGYLVIGLNYALVLAIIASLTSIVP 274

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P+     +I +    +      L +   I   I  K + P ++G  + +  +   F 
Sbjct: 275 YLGPVIAITPAIIISAVTSPAMLVKLAVVWIIVQSIEGKFISPQVMGKNLSVHPITIIFV 334

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++ G    G+LG+       A++ VI
Sbjct: 335 ILIGGNLFGILGIIFAVPGYAVLKVI 360


>gi|110634314|ref|YP_674522.1| hypothetical protein Meso_1964 [Mesorhizobium sp. BNC1]
 gi|110285298|gb|ABG63357.1| protein of unknown function UPF0118 [Chelativorans sp. BNC1]
          Length = 378

 Score = 92.6 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 56/333 (16%), Positives = 117/333 (35%), Gaps = 15/333 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             I+++ LY       P L+ +++ +   PI      +   S     V+   + + L ++
Sbjct: 28  AAILILFLYVFSSILLPFLAGMVLAYFLDPIADRLE-RVGLSRLAATVLILCAFIILLVI 86

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L+ +      ++ +   ++             L  +   +       +   +PQSL+  
Sbjct: 87  ALMVIIPVLGNQLTDFTMRL-------PDYLTRLQALITNIDPGWFEERIGVNPQSLREG 139

Query: 137 SETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
             T L T G  F+          G+  ++     +   +  F+   D   +  ++DS   
Sbjct: 140 LSTLL-TQGAGFVATLFKSIWSSGVALVNLVSLFVVTPVVAFYMLLDWDHMVSKVDSWVP 198

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  ++I+R +         G   I +  G        L G+   + +G    +++ 
Sbjct: 199 RKQVETVRQIARDINTATAGFVRGQGTICLILGCFYAVGLTLVGLNFGLLIGFFAGLISF 258

Query: 254 IPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           IP    +   A+SI + +       +    + +      F+    L+P LVG  + L  +
Sbjct: 259 IPFVGSLVGLALSIGVALVQFWPEWYWVLAVAVIFFAGQFVEGNILQPKLVGRSVGLHPV 318

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              F L       G +GL I     A IAV+ +
Sbjct: 319 WLMFALYAFGFLFGFVGLLIAVPASAAIAVLVR 351


>gi|154490306|ref|ZP_02030567.1| hypothetical protein PARMER_00539 [Parabacteroides merdae ATCC
           43184]
 gi|154088917|gb|EDN87961.1| hypothetical protein PARMER_00539 [Parabacteroides merdae ATCC
           43184]
          Length = 382

 Score = 92.6 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 61/342 (17%), Positives = 119/342 (34%), Gaps = 15/342 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           I+  +  L+    P L A ++ +   P    F  K +  S  L+++A +    L I  + 
Sbjct: 27  IIYLIAVLRNALLPFLIAWLLAYMMQPFVKFFQYKVKLKSRLLSILAVLVSTLLVISLVG 86

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            +    + +      +++  +  G         IP    +   + +    P  L  L   
Sbjct: 87  VVIVPSVTQEFNRTLELMQEHNSGY------GHIPMIPQSWAEYLEKNIDPDQLAQLLSK 140

Query: 140 FLKTNGIDFIPRFASRFGMIFLD--YCLSIIFMIIALF-FFYRDGFSISQQLDSLGEHLF 196
                 +  I               + ++I+F+I   F F   D   I      L    +
Sbjct: 141 ENIEKAVKQIAPKMWIVLTNTFSILFSITIVFVIFLYFIFILLDYERIVNGWIRLIPERY 200

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
             + + ++  V   +   F G ++IA+  G++    + + G P  V LG+    + +IP 
Sbjct: 201 RPFVQGLADDVEYSMNRYFRGQSLIALCVGILFAIGFKIVGFPLAVILGLFIGFLNLIPY 260

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWG------AIELFIVDKTLRPFLVGGPIKLPFL 310
              I    + +  L+K          ++G       I   I D  L P ++G  + L   
Sbjct: 261 MQTIGIIPMILLSLLKAAETGENFWLIFGSGILVLCIVQCIQDLYLTPRIMGKAMGLNPA 320

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
                L      +G +GL I   L  L    +K  I+  ++ 
Sbjct: 321 IILLSLSIWGTLLGFIGLIIALPLTTLFLSYYKRFILMEEDQ 362


>gi|172058311|ref|YP_001814771.1| sporulation integral membrane protein YtvI [Exiguobacterium
           sibiricum 255-15]
 gi|171990832|gb|ACB61754.1| sporulation integral membrane protein YtvI [Exiguobacterium
           sibiricum 255-15]
          Length = 374

 Score = 92.6 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 55/348 (15%), Positives = 123/348 (35%), Gaps = 20/348 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            + +F     +  L  F  P + A ++   S P+   F  +   +  + A+++ + +  L
Sbjct: 16  ILAIFFTGWLIIRLSSFMYPFVFAFLLALFSRPLVDFFQKRLRINRGWGALLSIILMSGL 75

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            I  L+ +    +  +  + +++    Q      + L         + +W       +SL
Sbjct: 76  LIGSLVLIIMQLIRGLVFVANQLPAQIQELSLYFQKL----YNEKLAPIWNDASEALRSL 131

Query: 134 KILSETFLKTNGIDFIPRFASRFGMI--------------FLDYCLSIIFMIIALFFFYR 179
           +   +  ++ +        AS  G                     L ++ +++A FF  +
Sbjct: 132 EPSQQNTVQNSIQSLGSSLASAIGEGSKSVAGMLQTVLATLPSIALILVIVLLAWFFISK 191

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D      +L       + A  + +   +   +         +      ++     + GV 
Sbjct: 192 DWHRYELRLKKYEMLPWFARAESVVTSLRSALFGYIKAQLTLITITFFIVLIGLLIIGVE 251

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              A+  I A   ++P  G    F     Y +I G+   A  L +  AI + +    + P
Sbjct: 252 HPFAIAFIAAFFDILPYLGTGSVFLPWIAYSIITGDTGLAIGLAILYAIVI-LQRNIMEP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            +VG  I +  +     L  G++  G+ GL +GP++  +I  +    I
Sbjct: 311 KIVGDNIGIQPITALIALFVGIQVFGVFGLILGPLIAVIIKALHNAQI 358


>gi|227432355|ref|ZP_03914347.1| permease [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
 gi|227351876|gb|EEJ42110.1| permease [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
          Length = 390

 Score = 92.6 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 47/325 (14%), Positives = 109/325 (33%), Gaps = 7/325 (2%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
           AP++ + ++ +   PI                 +  + ++ +  V +  +      ++ +
Sbjct: 61  APIMISGVLYYLLSPIVGLLEKYVHLPRNLSIGVVLIVLLAIIGVVIAAIVMVLRNQVIQ 120

Query: 92  LV-SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            + +           +    +          L   +    Q++   S+ +L +       
Sbjct: 121 FIDNWPNYWKTSETFINETFASEQFKFIRDYLNHTNSDLNQNVLDWSKKYLTSGVAGI-- 178

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              S F  I     ++I+     L++   DG   S  + S   +      + +   + K 
Sbjct: 179 ---SSFASILTSIGVTIVSTPFILYYMLLDGHKFSSFVSSKFPNNSQLSVRYLLTEISKQ 235

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
           I     G   +A+   ++    Y + G+P  + L ++     +IP  G+ I+   V    
Sbjct: 236 IAQYIRGQLGVALAVMIMFSIGYTIIGLPYGILLALMAGFFNLIPYIGSIIAQVPVFTVA 295

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           LI G         +  AIE  I    + P ++G  + +  +     L+      G+LG+ 
Sbjct: 296 LIAGGPKMLILAIIVLAIEQPIEAHVISPKILGEALSIHPVTVIVVLLSSGHIFGVLGIV 355

Query: 330 IGPVLMALIAVIWKESIMAIKENKE 354
           +     A+  V         + N +
Sbjct: 356 LAVPSYAVAKVFVTHIYDWWRANSD 380


>gi|253577881|ref|ZP_04855153.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850199|gb|EES78157.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 485

 Score = 92.6 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 48/361 (13%), Positives = 117/361 (32%), Gaps = 23/361 (6%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK--------------EESSTFLAVI 65
           ++V +    G  AP++  +I+ +   P+ + F  K               +         
Sbjct: 36  LIVGIKTFLGIMAPIIYGVILAYILSPLINLFEQKLIYPQLEKHNIKLQKKGKRAIRWGC 95

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
              S+   +I+    L       ++ ++S +     +   + +WL+      W  +L  +
Sbjct: 96  VLFSMFLFWIIIYALLMMVLPQLIRSIMSIIYSFPYYVKVIEKWLNSFVEHGW--KLNPE 153

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL---SIIFMIIALFFFYRDGF 182
            L       + ++ +L T+ +  +            D  +   + +   I   +   D  
Sbjct: 154 MLDMINQYSVKAQEYLTTDILPQMQDMLKNVSAGIFDILIFMKNFLIGAIVALYVLADKE 213

Query: 183 SISQQLDSLGEHLFPAYWK----KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
               +   +   + P  W     ++ R   K       G  + +   G++      L  +
Sbjct: 214 KFVAKSKMMVYAILPHKWANMLIRVMRFTDKTFGGFIYGKLLDSAIIGILCYFGMLLLDL 273

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + VI  +  +IP   P       I L++  +        ++  +        L P
Sbjct: 274 PYPILISVIIGMTNVIPFFGPYIGAIPCILLILVVDPIKGLYFAIFILLLQQFDGNILGP 333

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            ++G    L        ++ G    G+ G+  G  + A++  +    I     +K+  + 
Sbjct: 334 KILGESTGLSSFMVIVAIMIGGGLFGVPGMIAGVPVFAVLYALIWRLINHSLNDKKMPAE 393

Query: 359 N 359
            
Sbjct: 394 E 394


>gi|312898878|ref|ZP_07758266.1| conserved hypothetical protein [Megasphaera micronuciformis F0359]
 gi|310620040|gb|EFQ03612.1| conserved hypothetical protein [Megasphaera micronuciformis F0359]
          Length = 373

 Score = 92.6 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 120/331 (36%), Gaps = 6/331 (1%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE--SSTFLAVIATVS 69
           +R ++M + +     +K  + PV+ +LII F   P+                   I+ + 
Sbjct: 25  LRVVLMILGVCLFLAVKEIYWPVIVSLIITFILTPLRDGIQKGLVRLFRRQVPIDISILL 84

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              + I  +  +    +     L+ ++ L   +   +     ++   + + +        
Sbjct: 85  SFVVLIAVIAVMTNSILK---PLIGQLNLLANNFSTIVSQTYELVVQLESDQAPIYIPDQ 141

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            +++   +   +   GID I         I     +    +    F+F +DG  +     
Sbjct: 142 VKAIVNEAFIKVSNYGIDGISNLVKSVFAIA-GTVVEFFVVPFITFYFLKDGERMMNAFV 200

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +L    +  + +     +  V+     G  +++     +  +  W+ GVP  + + ++ A
Sbjct: 201 NLYPSDYRLHLRSYFEELSLVLSRYIRGQLLMSCIIACLTFTGMWIMGVPYPLVIALLAA 260

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I   IP   PI     +I L    +   A  + ++ A+   I    + P ++G  I +  
Sbjct: 261 ITEWIPVIGPIVGAIPAILLGATISPSLALKVLIFYAVVQQIDGHLIMPQVMGKVISIHP 320

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           +     L+ G    G+ G+ +   L+A++  
Sbjct: 321 VVIVIALLIGGTLFGVAGMILTVPLVAVLQT 351


>gi|225868326|ref|YP_002744274.1| membrane protein [Streptococcus equi subsp. zooepidemicus]
 gi|225701602|emb|CAW98855.1| putative membrane protein [Streptococcus equi subsp. zooepidemicus]
          Length = 393

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 63/337 (18%), Positives = 126/337 (37%), Gaps = 7/337 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    L FL     P++ + I+ + + P+    + K   + T    I    V+ LF 
Sbjct: 43  ISFLFTPILSFLTIIMLPLVISTILYYLTKPLVD-MVEKLGPNRTASIFIVFGLVILLFF 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +         +++  V  +             L +    +         L+      +
Sbjct: 102 WAISGFIPMIQDQLRSFVEDLPKYVAKVNLEANKLLENEWLVSYRSNLQDMLTSMSQKAL 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   N ID+   FA     I     ++II     LF+F RD   +   L ++    
Sbjct: 162 DYAQSFSKNAIDWAGNFAGAIARIT----VAIIMSPFILFYFLRDSGHMKNGLVNVLPIK 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   + + +     G   +AI  GL+    + L G+   +  G+I   + MIP
Sbjct: 218 LRQPMARVLGEINQQLSGYVQGQVTVAIVVGLMFSVMFSLVGLNYSITFGIIAGFLNMIP 277

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G+ ++   V I  +++G +     L ++  IE  I  + + P ++G  + +  +   F
Sbjct: 278 YLGSFLAMIPVVIMGMVQGPLMLIKVLIIF-VIEQTIEGRFVAPLVLGNKLSIHPITIMF 336

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            L+      G+ G+F+   + A + V+ KE     K+
Sbjct: 337 LLLTAGSMFGVWGVFLVIPVYASVKVVVKELFDWYKD 373


>gi|229135431|ref|ZP_04264218.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           BDRD-ST196]
 gi|228647992|gb|EEL04040.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           BDRD-ST196]
          Length = 365

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/351 (16%), Positives = 130/351 (37%), Gaps = 16/351 (4%)

Query: 11  IMRWMIMFIILV----SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           I+R M + +  V    +L ++ G   P + A    +   P+ +    K +       +++
Sbjct: 2   ILRLMFVIVATVVGFYALLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVS 61

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + V    +  + +L    +     L+  V +     +   +  +         +L +K 
Sbjct: 62  LILVFGAIVGLVTYLVTEAISATTYLLQIVTVKFPDIVAFAQQFALNHIMPLYDDLISKF 121

Query: 127 LSHPQSLKILSETFLKTNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFF 176
               +  +      ++  G +           I    + F          ++F+++A FF
Sbjct: 122 NHLGEPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFF 181

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
              D   ++ ++  L  +    Y K I   + K +         +     +++     + 
Sbjct: 182 ISYDWHRLAHKVRKLLPNRLHGYGKTIFVDLRKALFGFVKAQLTLVSMTTIIVLIGLLIL 241

Query: 237 GVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
            VP  + + +IT ++ ++P  G    F    IY+   G+   A  L +   + + +  + 
Sbjct: 242 RVPYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVI-VQRQI 300

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           + P ++   I L  L T   L  G +  G LGL IGPV++ L+  + K  +
Sbjct: 301 MEPKVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVILVLLNTLHKAHV 351


>gi|310829305|ref|YP_003961662.1| possible permease [Eubacterium limosum KIST612]
 gi|308741039|gb|ADO38699.1| possible permease [Eubacterium limosum KIST612]
          Length = 355

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 62/343 (18%), Positives = 116/343 (33%), Gaps = 13/343 (3%)

Query: 14  WMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
            +I  +  + L+    G F P   A+I+ +   P+      ++        +   V V+ 
Sbjct: 18  VLICILFAIFLWPTFSGMFMPFFIAIILAYLLNPL-VKIFERRGFGRGLSVLFVCVIVLL 76

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           +     +      +  + ++V+ +    Q                  SE   K+     S
Sbjct: 77  ILFGVFMSFVPSLISNIAQMVTNIPSMLQDLQN---------YSGQISEFIQKYNDSDMS 127

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDY--CLSIIFMIIALFFFYRDGFSISQQLDS 190
                E  L      F          I  +    ++II + +   F   D    +Q L  
Sbjct: 128 KYFNLEQSLSQVAGMFGGMLQGLSNAIIANSGQLMNIIIVPLVTIFLLLDKELFTQSLMY 187

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L         KK+   +  VI     G  +++I  G++ G   +  G+P    +GVI  +
Sbjct: 188 LVPIDARNQVKKMFYDIDMVIGGFIRGQGLMSIIAGILTGVGAYFMGLPYAPVIGVIAGV 247

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             MIP   P     V   + +  +      + +W AI   +    L P L+ G + L  +
Sbjct: 248 TTMIPYFGPAVGMVVICIMALLSSPIQMVYILIWMAIVQVVCGNLLAPALMSGNVGLHPV 307

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              F +       G LG+ +   +M  + V+ K  I     +K
Sbjct: 308 IIIFSIFFFGAMFGGLGMILAVPIMGTVKVVMKYLIAGFASSK 350


>gi|296128795|ref|YP_003636045.1| protein of unknown function UPF0118 [Cellulomonas flavigena DSM
           20109]
 gi|296020610|gb|ADG73846.1| protein of unknown function UPF0118 [Cellulomonas flavigena DSM
           20109]
          Length = 420

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/297 (16%), Positives = 96/297 (32%), Gaps = 13/297 (4%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           P+  +         +  A  A V ++ L    L       +  + EL  +          
Sbjct: 67  PVVRALQRYVRLPRSAAAGTALVGLIALVAGLLTLAGRSIVNGIAELWEQARSGFDE--- 123

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           +  WLS+ P  +   E+   +L   Q     S           +   A   G+       
Sbjct: 124 LLTWLSEGPLQLGTGEI-EDYLGQVQDAAASS--------GQQLVSGALSVGVTVGHVAA 174

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
             +  +    FF  DG  I   L  L          +  R     + +      ++A  +
Sbjct: 175 GTLIALFCTLFFLIDGRGIWAWLVGLMPRGSRERVHQAGRRGWVTLGAYTRTQILVAAVD 234

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLW 284
            + +G       +P  V L V+    + IP    I   ++++ + L+     +A  +   
Sbjct: 235 AVGIGIGAAFLQLPLVVPLAVLVFFGSFIPFVGAIVTGSIAVLVALVTQGWVSALIMLGI 294

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             +   +    L+PFL+G  + L  +     +  G    G++G      L AL+  +
Sbjct: 295 VLLVQQLEGHVLQPFLMGHAVSLHPVAVLLVVTTGSLVAGIVGALFAVPLAALVNTV 351


>gi|153009902|ref|YP_001371117.1| hypothetical protein Oant_2575 [Ochrobactrum anthropi ATCC 49188]
 gi|151561790|gb|ABS15288.1| protein of unknown function UPF0118 [Ochrobactrum anthropi ATCC
           49188]
          Length = 415

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/332 (12%), Positives = 110/332 (33%), Gaps = 19/332 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  Q +     + + ++ L        P ++ + + +   P+      +   S     ++
Sbjct: 44  VRRQAMFWVGTVAVFVLFLIVFSSVLLPFVAGMALAYFLDPVADRLE-RFGLSRLTATIV 102

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI--PGGMWASELW 123
             +  +   +V L+ +      ++ + +SK+          P +++ +        S+  
Sbjct: 103 ILLIFLMALVVGLMIIVPILATQLADFISKI----------PDYITQLQSLLANEDSQWL 152

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRD 180
            K++    S+   + + L   G  F+          G   +D     +   +  F+   D
Sbjct: 153 KKYIGIDSSVIQQNLSSLLQQGAGFMSTLLQSLWNSGKSLIDIAGLFVVTPVVAFYMLLD 212

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +DS          ++I+  +   +     G   + +  G        L G+  
Sbjct: 213 WDRMVSSIDSWVPRRQLHTVRRIAAEMNAAVAGFIRGQGTLCLILGTYYAIGLTLTGLNF 272

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLR 297
            + +G    +++ IP        A++I + +     +      +     +  F+    L+
Sbjct: 273 GLLIGFFAGLISFIPYIGSFVGLALAIGVALVQFWPDWIMICAVAGVFFLGQFVEGNILQ 332

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           P LVG  + L  +   F L       G  G+ 
Sbjct: 333 PKLVGSSVGLHPVWLMFALFAFGSLFGFTGML 364


>gi|260909414|ref|ZP_05916122.1| membrane protein [Prevotella sp. oral taxon 472 str. F0295]
 gi|260636506|gb|EEX54488.1| membrane protein [Prevotella sp. oral taxon 472 str. F0295]
          Length = 371

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/369 (14%), Positives = 136/369 (36%), Gaps = 23/369 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M E  +    ++RW I  ++++++YF    +     P   A ++ +  +P+         
Sbjct: 1   MLEEKITLDKLVRWTISGLLILAVYFVTNSMSEVLLPFFIACLLAYLLYPLVKFTEKYLH 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE----MKELVSKVVLANQHGIPVPRWLSD 112
                L+++  V V+   +  +  L    M+E    + EL ++ + ++     +  ++ +
Sbjct: 61  IRIRALSILFVVLVLAGLLTGIGLLIVPSMIEQFDKISELAARYLGSSTPASDLSSYIQN 120

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
                W  E         +S             +  +    +   +  +  C+++++M  
Sbjct: 121 -----WLREHQEDIDRFVRSKDFNETLRTTMPKLFNLLGQTASVVVSIVASCITLLYM-- 173

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
             FF   D   +++    +       +W ++++   + + +   G  ++++  G++    
Sbjct: 174 --FFILLDYEFLTENWVRIFPKKHRPFWNELAQDASRELNNYIRGQGLVSLIMGIMFCIG 231

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI----KGNIFNATC--LFLWGA 286
           + +   P  + LG++  +M ++P     +    +   L+     G  F        L   
Sbjct: 232 FTIIDFPMAIGLGILIGVMNLVPYLHTFALIPTAFLALLKAGDTGQNFWVIFGMAILVFI 291

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           +   I D  + P ++G  + L        L      +G +GL I   L  LI   W+  +
Sbjct: 292 VVQIISDMVVTPRVMGKAMGLNPAIILLSLSVWGSLLGFIGLIIALPLTTLIMAYWQRYV 351

Query: 347 MAIKENKEK 355
              + + E 
Sbjct: 352 TKEEVDDEP 360


>gi|229013801|ref|ZP_04170929.1| Sporulation integral membrane protein YtvI [Bacillus mycoides DSM
           2048]
 gi|229169323|ref|ZP_04297033.1| Sporulation integral membrane protein YtvI [Bacillus cereus AH621]
 gi|228614086|gb|EEK71201.1| Sporulation integral membrane protein YtvI [Bacillus cereus AH621]
 gi|228747470|gb|EEL97345.1| Sporulation integral membrane protein YtvI [Bacillus mycoides DSM
           2048]
          Length = 365

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 55/349 (15%), Positives = 127/349 (36%), Gaps = 12/349 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +   +   +L ++ G   P + A    +   P+ +    K +       +++ +
Sbjct: 4   RLIFVIVATVVGFYALLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLI 63

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V +     +   +  +         +L +K   
Sbjct: 64  LVFGAIVGLVTYLVTEAISATTYLLQIVTVKFPDIVAFAQQFALNHIMPLYDDLISKFNH 123

Query: 129 HPQSLKILSETFLKTNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +  +      ++  G +           I    + F          ++F+++A FF  
Sbjct: 124 LGEPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFIS 183

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   ++ ++  L  +    Y K I   + K +         +     +++     +  V
Sbjct: 184 YDWHRLAHKVRKLLPNRLHGYGKTIFVDLRKALFGFVKAQLTLVSMTTIIVLIGLLILRV 243

Query: 239 PSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P  + + +IT ++ ++P  G    F    IY+   G+   A  L +   + + +  + + 
Sbjct: 244 PYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVI-VQRQIME 302

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           P ++   I L  L T   L  G +  G LGL IGPV++ L+  + K  +
Sbjct: 303 PKVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVILVLLNTLHKAHV 351


>gi|116490227|ref|YP_809771.1| permease [Oenococcus oeni PSU-1]
 gi|116090952|gb|ABJ56106.1| Predicted permease [Oenococcus oeni PSU-1]
          Length = 394

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/318 (13%), Positives = 100/318 (31%), Gaps = 10/318 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F++  F P++ A  + +   P+                 I     + + I   +      
Sbjct: 39  FIRTIFLPLIVAGFLYYLLHPVVVFLEKHFHFKHLLAVAITFFVFIVILISVFVIFVPQL 98

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  ++  +         +           W    W K L     +  + +   K + 
Sbjct: 99  IAQISNMLGSLPKFVDDMRNMTD--------SWVKSKWFKQLYQDVKISNIQKQISKYSS 150

Query: 146 --IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             ++               + ++II + I LF+   DG      ++             +
Sbjct: 151 TFLEMSLSSLGNIASFLTTFTINIITIPIMLFYMLADGDKFIPFINRFIFPSRSKEVNDL 210

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
           +  +   I     G  I  I     +   Y +   P    LG+   +  +IP   P    
Sbjct: 211 AARMNNTISRYIDGQFIEGIFVMFFITGGYLIIRQPFAPLLGIFAGLCVLIPYLGPFISI 270

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             SI + +  +      + +   I   +    + P ++G  +K+  L     L+      
Sbjct: 271 IPSILIALTVSGQQVLAVLVVVLIVSQLDGNLIYPNVIGRNLKIHPLTIIIILLSAGNIW 330

Query: 324 GLLGLFIGPVLMALIAVI 341
           GL+G+ +G  + A++  +
Sbjct: 331 GLIGIILGVPIYAVLRTL 348


>gi|116255449|ref|YP_771282.1| putative transmembrane protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115260097|emb|CAK03196.1| putative transmembrane protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 684

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 54/342 (15%), Positives = 110/342 (32%), Gaps = 24/342 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           +P  +  +  +  ++  LYF K    P+  A+++ F   PI S    +K       AVI 
Sbjct: 49  SPSRMPAFASVLAVIAILYFGKDVLLPLAIAVLLTFALAPISSRL--RKLGMPRIPAVIV 106

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           TV +  L    L+         + E+   +     + I   R L +           T  
Sbjct: 107 TVVIAFLV---LVLFGLVVAGHVAEVAQNLPAYQGNIIAKIRSLQESGTDSGIVRRLTSV 163

Query: 127 LSHPQSLKILSETFLKTNGIDF----------------IPRFASRFGMIFLDYCLSIIFM 170
           +         +E      G                   I    S  G   L    S+  +
Sbjct: 164 VESVGRELSNAEERPAAPGTGSRPREPVLVEIFAPSRPIETLTSLIG-PLLGPIASLGLI 222

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           I+ + F   +   +  +   L  +       +  +     +    L   ++    G+ L 
Sbjct: 223 IVVVIFMLLEREELRDRFIRLVGYGDLHRTTEAIQEAGSRVARYLLMQLVVNCAYGVPLA 282

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL- 289
              W  G+P+    G++  ++  +P   P+  T + ++L    +   +  L++     + 
Sbjct: 283 LGLWAVGIPNPALWGMLAIVLRFVPYIGPVIATVLPLFLAFAVDPGWSLVLWVGAIFLVL 342

Query: 290 -FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
               +  + P+L G    L  L      +      G +GL +
Sbjct: 343 ELTSNNVIEPWLYGSRTGLSPLAIIVAAIFWAWLWGPVGLVL 384


>gi|28868908|ref|NP_791527.1| permease [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213971899|ref|ZP_03399999.1| permease [Pseudomonas syringae pv. tomato T1]
 gi|301384469|ref|ZP_07232887.1| permease, putative [Pseudomonas syringae pv. tomato Max13]
 gi|302062184|ref|ZP_07253725.1| permease, putative [Pseudomonas syringae pv. tomato K40]
 gi|302131787|ref|ZP_07257777.1| permease, putative [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28852147|gb|AAO55222.1| permease, putative [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213923324|gb|EEB56919.1| permease [Pseudomonas syringae pv. tomato T1]
 gi|330877083|gb|EGH11232.1| permease [Pseudomonas syringae pv. morsprunorum str. M302280PT]
 gi|331016799|gb|EGH96855.1| permease, putative [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 357

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 54/334 (16%), Positives = 128/334 (38%), Gaps = 14/334 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +++  +  L     P L AL++ +   P+                   T+SV+ +F +
Sbjct: 13  LALLIAFVVLLHTILTPFLVALLLAYMGDPLVDRLERAGLSR--------TLSVVAVFGL 64

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLK 134
             L L    ++ +  L  ++    +    +  WL    +P       L        +   
Sbjct: 65  FTLVLMTLLLVLVPMLAKQLFRLYELAPQILDWLQHSAMPWVQAKFGLADGFWKFDKIKA 124

Query: 135 ILSETFLKT-NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            +SE   +  + +  +   A+  G+  + +  +++ + +  F+  RD   +  ++  L  
Sbjct: 125 AISEHMGQAGDIVSIVLSQATASGLALIGWLTNLVLIPVVCFYLLRDWDLMMGKVRGLLP 184

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
               +   K++    +V+ +   G  ++ +G G++  +   L G+   + +GVI  + A+
Sbjct: 185 RQRESQIVKLAGECHEVLGAFIRGQLLVMVGLGVIYAAGLMLVGLELGLLIGVIAGLAAI 244

Query: 254 IPGGAPISFTA---VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +P    +       V+      G+++    +     I   +    L P LVG  I L  +
Sbjct: 245 VPYMGFVIGIGSALVAGLFQFGGDLYPMMGIVAVFMIGQALEGMVLTPLLVGDRIGLHPV 304

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              F ++ G    G  G+ +   + A+I V+ + 
Sbjct: 305 AVIFAILAGGELFGFTGILLALPVAAVIMVLVRH 338


>gi|307709047|ref|ZP_07645507.1| conserved hypothetical protein [Streptococcus mitis SK564]
 gi|307620383|gb|EFN99499.1| conserved hypothetical protein [Streptococcus mitis SK564]
          Length = 388

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 114/335 (34%), Gaps = 5/335 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    L FL     PV+ + ++ +   PI       K         I  V +    I
Sbjct: 42  ISFLFSPVLDFLAVVMLPVILSGLLYYLLNPIVDWLEKHKINR-VIAISIVFVIIALFII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      V +  +    V   L              + L++  S   
Sbjct: 101 WGLAVAIPNLQRQVLTFARNVPIYLEDADRVINDLVTKRLPDDFRPQLEQVLTNFSSQAT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +  + + +  ++++  F S    +     +++I +   LF+  RDG  +   L       
Sbjct: 161 VWASKVSSQAVNWVSAFISGASQV----IVALIIVPFMLFYLLRDGKGLRHYLTQFMPTK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   V + + +   G   +AI   ++    + + G+   V LGV   I+ ++P
Sbjct: 217 LKEPVGQVLSDVNQQLSNYVRGQVTVAIIVAVMFMIFFKIIGLRYAVTLGVTAGILNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPVMLLKVVIVFIVEQTIEGRFVSPLILGSQLNIHPINVLFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+      G+ G+ +G  + A   V+        K
Sbjct: 337 LLTSGSMFGIWGVLLGIPVYASAKVVISAIFEWYK 371


>gi|239831547|ref|ZP_04679876.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301]
 gi|239823814|gb|EEQ95382.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301]
          Length = 413

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/305 (13%), Positives = 103/305 (33%), Gaps = 19/305 (6%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P ++ + + +   P+      +   S     V+  +  +   ++ L+ +      ++ + 
Sbjct: 69  PFVAGMALAYFLDPVADRLE-RLGLSRLAATVVILLIFLMALVLGLMIVVPILATQLADF 127

Query: 93  VSKVVLANQHGIPVPRWLSDI--PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           +SK+          P +++ +        S+   K++    S+   + + L   G  F+ 
Sbjct: 128 ISKI----------PEYITQLQSLLANEDSQWLKKYIGIDSSVIQQNLSSLLQQGAGFLS 177

Query: 151 RFASRF---GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
                    G   +D     +   +  F+   D   +   +DS          ++I+R +
Sbjct: 178 TLLQSLWNSGKSLIDIAGLFVVTPVVAFYMLLDWDRMVSSIDSWVPRRQLHTVRRIAREM 237

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
              +     G   + +  G        L G+   + +G    +++ IP        A++I
Sbjct: 238 NAAVAGFIRGQGTLCLILGTYYAIGLTLTGLNFGLLIGFFAGLISFIPYIGSFVGLALAI 297

Query: 268 YLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            + +     +      +     +  F+    L+P LVG  + L  +   F L       G
Sbjct: 298 GVALVQFWPDWIMICAVAGVFFLGQFVEGNILQPKLVGSSVGLHPVWLMFALFAFGSLFG 357

Query: 325 LLGLF 329
             G+ 
Sbjct: 358 FTGML 362


>gi|298243575|ref|ZP_06967382.1| protein of unknown function UPF0118 [Ktedonobacter racemifer DSM
           44963]
 gi|297556629|gb|EFH90493.1| protein of unknown function UPF0118 [Ktedonobacter racemifer DSM
           44963]
          Length = 381

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/295 (17%), Positives = 109/295 (36%), Gaps = 8/295 (2%)

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++ + +V L+ L  + +L    L + +   +     +        G     E    +   
Sbjct: 82  IVAILVVYLIVLSAFSLLGYITLRATITQTHDLLRYMQSLTERHGGQPTQLERSLGNFGI 141

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            ++       FL T G +F  R A  F   FL++ +  + + I   +   DG  + Q L 
Sbjct: 142 TRAQINEGRQFLLTRGEEF-TRDAIPFLRSFLEFLIDTVIVAILSIYLLIDGTRVIQWLR 200

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY-WLAGVPSHVALGVIT 248
                   A +  +   + +V+     G   +A+   +++G    ++  +P    LG++ 
Sbjct: 201 RNTPQAARANF--LLDTLQRVVGGYIRGQFTLALLISVLVGLGMGFIFHLPYAFLLGILA 258

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            IMA IP        AV I + +  +   A  + ++      I  + + P +VG  + L 
Sbjct: 259 FIMAFIPVLGTFISGAVCILIALTQSWVTALLVLVYFVFIHVIEGEVVGPRIVGKSVGLH 318

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALI----AVIWKESIMAIKENKEKISSN 359
            + + F LV G    G+ G      +  ++     V+W E      +   +    
Sbjct: 319 PIVSLFALVAGGELFGIWGTLFASPIAGVLQTIIIVLWSEWRTRHPDQFAQTREQ 373


>gi|238763603|ref|ZP_04624564.1| permease perM [Yersinia kristensenii ATCC 33638]
 gi|238698235|gb|EEP90991.1| permease perM [Yersinia kristensenii ATCC 33638]
          Length = 354

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 57/358 (15%), Positives = 123/358 (34%), Gaps = 18/358 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +PQ I   +I+      LYF  G  AP+L+A+++ +   WP     + +   S  
Sbjct: 10  RRRFTDPQVIALLVILLAGFCILYFFSGILAPLLAAIVLAYLLEWPTAR--LQRIGCSRP 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           + A I  V    + ++ +  +      +   L+S           +P+ L+         
Sbjct: 68  WAASIVLVVFGGIALLAVFVVAPTVWQQGNNLMS----------DMPKMLNKFNAFAQTL 117

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGI--DFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                 L     + +++E          + + + +    +  L   + +I + + LFF  
Sbjct: 118 PSRYPALVDAGIVDMMAENLRSKLSGMGESVVKISLASLIGLLTLAIYLILVPLMLFFLL 177

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D   +   +  +         +     + + I +   G  +  +  G+     +++ G+
Sbjct: 178 KDKEQMLNAVRRILPRNRGLAGQVWLE-MNQQITNYIRGKVLEMVVVGIATYLVFFVLGM 236

Query: 239 PSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTL 296
              + L V+     +IP  GA I    V +  L +  I      LF+   +   +    L
Sbjct: 237 NYALLLSVLVGFSVLIPYIGAVIVTIPVVLVALFQWGIGADFWTLFVAYLVVQGLDGNLL 296

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            P L    + L  L     ++      G  G+F    L  L+  +          + +
Sbjct: 297 VPVLFSEAVNLHPLVIILSVIIFGGMWGFWGVFFAIPLATLVKAVIHAWPEEFIPDAD 354


>gi|251782671|ref|YP_002996974.1| hypothetical protein SDEG_1265 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391301|dbj|BAH81760.1| hypothetical membrane spanning protein [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 393

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 59/337 (17%), Positives = 125/337 (37%), Gaps = 7/337 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + F      P++ + I+ + + P+    I+    S T    I    ++ LF+
Sbjct: 43  ISFLFTPVISFFAVIMLPLVISTILYYLTKPLVD-LINHLGPSRTTSIFIVFGLIILLFV 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +         ++   +  +             L +    +         L++     +
Sbjct: 102 WAISGFVPMVQTQLTSFIEDLPKYVGKVNEEANKLLENEWLVSYKPQLQDMLANTSQKAL 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   N ID+   FA     I     ++II     LF+F RD   +   L ++    
Sbjct: 162 DYAQSFSKNAIDWAGNFAGAIARIT----VAIIISPFILFYFLRDSGKMKNGLVNVLPIK 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   + K +     G   +AI  G +    + L G+   +  G+I   + MIP
Sbjct: 218 LRMPMARVLGDINKQLSGYVQGQVTVAIVVGFMFSIMFSLVGLKYSITFGIIAGFLNMIP 277

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G+ ++   V I  +++G +     L ++  IE  I  + + P ++G  + +  +   F
Sbjct: 278 YLGSFLAMIPVIIMAMVQGPLMLVKVLVIF-MIEQTIEGRFVAPLVLGNKLSIHPITIMF 336

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            L+      G+ G+F+   + A + V+ KE     ++
Sbjct: 337 LLLTAGSMFGVWGVFLVIPMYASVKVVVKELFDWYQK 373


>gi|302335911|ref|YP_003801118.1| protein of unknown function UPF0118 [Olsenella uli DSM 7084]
 gi|301319751|gb|ADK68238.1| protein of unknown function UPF0118 [Olsenella uli DSM 7084]
          Length = 476

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 86/233 (36%)

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
           G   +    ++L    +          ++ ++ +        M      +++   ++  +
Sbjct: 139 GSSKTSEVQQNLDQMVNAASNLGISASSDLLEKLSSGLMDNVMSLFSNTVTLFLGLVLGY 198

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           +F +D   I+++   +           +  ++ + +     G+ I ++ +G++    + L
Sbjct: 199 WFAKDYPRIAREFRIVAGPDHERSLSVMLCVMSRSMGGYMRGIVITSLLDGILSFVGFSL 258

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
            G P    +  +  ++  +P   P    A++  L +      A    +   I   +VD  
Sbjct: 259 IGNPYAGLMATLAGVLHFVPVIGPWVSAAMATSLALFVGPLLAIETLMVAVIATNVVDNV 318

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           + P ++   +K+    +  G++ G    G LG+ +   L A I  ++     +
Sbjct: 319 ISPLVMQSAVKVHPALSLLGIMVGSALGGTLGMILAIPLTAAIRSVFVYYFES 371


>gi|296119053|ref|ZP_06837625.1| putative membrane protein [Corynebacterium ammoniagenes DSM 20306]
 gi|295967888|gb|EFG81141.1| putative membrane protein [Corynebacterium ammoniagenes DSM 20306]
          Length = 416

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 57/336 (16%), Positives = 115/336 (34%), Gaps = 18/336 (5%)

Query: 13  RWMIMFIILVSLYFLKGF----FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           R++++   L    FL  F      PV+ A+++     P+ S   S K       ++   +
Sbjct: 48  RFIVIVAALAVAGFLLYFVWVGLLPVILAILLSSVLAPVTSKLRSWKFP-PALASISTLL 106

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ + +     +      +  +L ++        + +     D+P  + A ++      
Sbjct: 107 GLLLIIVGVFTAMGPVVSRQGSQLWTQAEEGIDKLLAMSE---DLPFNIDAEQI------ 157

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               L   + +FL+   +  I               +++  M I  FF  +DG      +
Sbjct: 158 --DKLVQDATSFLQGQ-MSSIASGVISGASAASSVLVTVAVMFIISFFILKDGDRFLPWV 214

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                     +  ++   V K +         +A  +   +G   W  GVP    L VIT
Sbjct: 215 RKYSGSTIGWHVTELFTRVWKTLAGFIQAQAAVAFVDAFFIGLGLWALGVPLAFVLAVIT 274

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
                IP  GA  +     +  L+   + NA  +     I   +    L+P L    + L
Sbjct: 275 FFAGFIPIIGAVTAGVLAVVIALVSNGLVNALLVLALILIVQQVEGNVLQPVLQSKAMGL 334

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                   +  G    G++G F+   + A IA + +
Sbjct: 335 HAAIVLLSVTVGSALAGIIGAFLAVPVAATIATVLR 370


>gi|315646087|ref|ZP_07899207.1| hypothetical protein PVOR_11660 [Paenibacillus vortex V453]
 gi|315278286|gb|EFU41602.1| hypothetical protein PVOR_11660 [Paenibacillus vortex V453]
          Length = 358

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 121/326 (37%), Gaps = 10/326 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             PV  A    +   PI      +K + S        + V+ L+ V       +G++   
Sbjct: 41  IVPVAMAGFFYYLLRPIVDYLERQKIKRS--------IGVLMLYFVFAGLCAIFGIVVWP 92

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L  ++     +   +   + +    +  +  W++ +     L      ++    I +I 
Sbjct: 93  TLREQMETFISNAPFLVEGVQEQIDQLQQNPYWSRFIPTESELTTSLTEYM-NRIITWIS 151

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              +    +     + I  + I L++  ++G  +  +L S+    F    +++   +   
Sbjct: 152 NSINNLITVVSGVVVIIATIPIILYYMLKEGNKLPPRLLSVLPRRFRRDGQEVLGEMDSA 211

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + +  +G  I+ +   +++   + + G+P  + L VI+  +  IP    +  T   + + 
Sbjct: 212 LSNFIIGKVILNLILSVLIYIGFLIIGLPYSLLLTVISFFLNFIPYIGALLATIPVVIVG 271

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
                  A    +   I   I D  L P + G  + +  L T   ++ G    GLLG+ +
Sbjct: 272 FIEAPSIAIWSVVVIVIAQQIQDNILTPVIYGKQLDIHPLTTVVLILVGGDFFGLLGILL 331

Query: 331 G-PVLMALIAVIWKESIMAIKENKEK 355
             P  M +  ++ +   + + E  E+
Sbjct: 332 AIPAYMIIKILVVRIYELFLAEKVEE 357


>gi|308176535|ref|YP_003915941.1| putative permease [Arthrobacter arilaitensis Re117]
 gi|307743998|emb|CBT74970.1| putative permease [Arthrobacter arilaitensis Re117]
          Length = 443

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 59/328 (17%), Positives = 111/328 (33%), Gaps = 13/328 (3%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +++ +L  +     PVL + ++     P+ ++  S+          I  +    L   
Sbjct: 61  LGVLVWALSKISLLVIPVLVSALLAGLLSPVVNAMNSRLAVPRGLAVGITLIGFFALVTA 120

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L             L ++ +   +    V  WL + P  +   +L +        L+  
Sbjct: 121 GLSLAGQRLTAGFNALWTQALAGIEQ---VQNWLFNGPLKLTNDDLQSVLDDTLAQLRGN 177

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           +   L            S  G I     L     I AL F   DG  I   L +L     
Sbjct: 178 ATNILSEAISW-----TSAIGQILTGTLL----AIFALIFLLLDGRKIGLFLINLLPRRA 228

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
                         + S      ++A+ + + +G   +  GVP  + LGV+  I + IP 
Sbjct: 229 RPAMDGALTRGWASLVSYVRVQMVVAMIDAIGIGLGAFFLGVPLAMPLGVLVFIGSFIPI 288

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            GA I+     +  L+     NA  +     +        L+P ++G  + L  L     
Sbjct: 289 VGALITGALAVLLALVANGWINALIMLAVVLLVQQAESNILQPLIMGKAVSLHPLAVVLA 348

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           + GG    G+ G      L+A++  + +
Sbjct: 349 VAGGTMLAGIPGALFAVPLLAVLNAVIR 376


>gi|123441475|ref|YP_001005461.1| hypothetical protein YE1133 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088436|emb|CAL11228.1| putative membrane protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 354

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 56/358 (15%), Positives = 123/358 (34%), Gaps = 18/358 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +PQ I   +I+      LYF  G  AP+L+A+++ +   WP     + +   S  
Sbjct: 10  RRRFTDPQVIALLVILLAGFCILYFFSGILAPLLAAIVLAYLLEWPTAR--LQRIGCSRP 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           + A +  V    + ++ +  +      +   L+S           +P+ L+         
Sbjct: 68  WAASLVLVVFGGIALLAVFVVAPTVWQQGNHLIS----------DMPKMLNKFNAFAQTL 117

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGI--DFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                 L     + +++E          + + + +    +  L   + +I + + LFF  
Sbjct: 118 PARYPALVDAGIVDMMAENLRSKLSGMGESVVKISLASLIGLLTLAIYLILVPLMLFFLL 177

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D   +   +  +         +     + + I +   G  +  +  G+     +++ G+
Sbjct: 178 KDKEQMLNAVRRILPRNRGLAGQVWLE-MNQQITNYIRGKVLEMVVVGIATYLVFFVMGM 236

Query: 239 PSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTL 296
              + L V+     +IP  GA I    V +  L +  I      LF+   +   +    L
Sbjct: 237 NYALLLAVLVGFSVLIPYIGAVIVTIPVVLVALFQWGIGADFWTLFVAYLVVQGLDGNLL 296

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            P L    + L  L     ++      G  G+F    L  L+  +          + +
Sbjct: 297 VPVLFSEAVNLHPLVIILSVIIFGGMWGFWGVFFAIPLATLVKAVIHAWPEEFIPDAD 354


>gi|256003346|ref|ZP_05428337.1| sporulation integral membrane protein YtvI [Clostridium
           thermocellum DSM 2360]
 gi|255992636|gb|EEU02727.1| sporulation integral membrane protein YtvI [Clostridium
           thermocellum DSM 2360]
 gi|316940232|gb|ADU74266.1| sporulation integral membrane protein YtvI [Clostridium
           thermocellum DSM 1313]
          Length = 360

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 59/316 (18%), Positives = 113/316 (35%), Gaps = 4/316 (1%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  +FAP L A  I     P+    + K +    F A+++ +  + +  + LL LF    
Sbjct: 28  LAIYFAPFLIAFAISSMIEPVVRFLMKKLKFRRKFAALVSLLLGLSMIAILLLMLFSKLY 87

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E+  L S      +        L  I  G+         ++   S  + S +   ++ +
Sbjct: 88  NEITSLSSSQPEFWKEAYQNISNL--INRGLNIYFGLPSEVTAQISNMVSSLSNSVSSLV 145

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
           D   +      +      + I   I++ +F   D   I   +              I   
Sbjct: 146 DSFVKGIYNTAISIPQMVIFIFVTILSTYFISSDRDRIYDYIKDNVPDALLNKIIDIKDS 205

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAV 265
           +   +        I+       L   + + GV   + LG++ + +   P  G        
Sbjct: 206 MFTALFGYVKAQLILMTITFCELSLGFTIIGVKRPILLGLVISFIDAFPVLGTGGVLVPW 265

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +IY  +  +I     L +   I L ++ + + P +VG  I L  L T   +  G++  GL
Sbjct: 266 AIYEFLTKDIRMGVSLLILYVIVL-VIRQMIEPKVVGEQIGLHPLMTLITMYLGMKFFGL 324

Query: 326 LGLFIGPVLMALIAVI 341
            GL +GP++  +   I
Sbjct: 325 PGLILGPIVTLIFKNI 340


>gi|328955593|ref|YP_004372926.1| protein of unknown function UPF0118 [Coriobacterium glomerans PW2]
 gi|328455917|gb|AEB07111.1| protein of unknown function UPF0118 [Coriobacterium glomerans PW2]
          Length = 458

 Score = 91.8 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/333 (14%), Positives = 121/333 (36%), Gaps = 10/333 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I   ++  L  L      +    ++ F + P     + +K       A+I  + +  +
Sbjct: 35  IVIAVAVMRVLGVLAAVVEFLAVGSLVAFIASP-MVRALERKGVPRGIGALIGLLVIAAV 93

Query: 74  FIVPLLFLFYYGMLEMKELVS----KVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            I   + L      +  E+++    ++    +  + V +    +    WAS+L     S 
Sbjct: 94  VICIGVVLVPVFAQQSLEILTRLPEQLRSLGEWVVSVSQEFRSLSQSAWASQLDMALSSL 153

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                          G    P  ++    +F+         ++  ++  RD   I +++ 
Sbjct: 154 ADVASSYMRQVASDVGEGVFPFISAFAWQLFI-----FFLGLVLAYWLARDYPRIHREIG 208

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L        +  +  I+ + +     GM I ++  G++  + + + G P    + V+ A
Sbjct: 209 ILVGERHELNYHFMIAIIARSVGGYMRGMVITSLINGVLAYAGFLIIGHPYAALMAVLAA 268

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  ++P   P    +++  + +  +   A    +   +   I D  + P ++   +++  
Sbjct: 269 LFHLVPVVGPWVSCSIATLIAVFYSPALAAWTLVVAVVSQNITDNVISPKIMQSAVQVHP 328

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
             +   +V G   MG LG+ I   L A +  ++
Sbjct: 329 AMSLTAIVAGSALMGALGMVIAIPLCAALKGLF 361


>gi|229062280|ref|ZP_04199601.1| Sporulation integral membrane protein YtvI [Bacillus cereus AH603]
 gi|228717008|gb|EEL68689.1| Sporulation integral membrane protein YtvI [Bacillus cereus AH603]
          Length = 365

 Score = 91.8 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 55/349 (15%), Positives = 127/349 (36%), Gaps = 12/349 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +   +   +L ++ G   P + A    +   P+ +    K +       +++ +
Sbjct: 4   RLIFVIVATVVGFYALLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLI 63

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V +     +   +  +         +L +K   
Sbjct: 64  LVFGAIVGLVTYLVTEAISATTYLLQIVTVKFPDIVSFAQQFALNHIMPLYDDLISKFNH 123

Query: 129 HPQSLKILSETFLKTNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +  +      ++  G +           I    + F          ++F+++A FF  
Sbjct: 124 LGEPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFIS 183

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   ++ ++  L  +    Y K I   + K +         +     +++     +  V
Sbjct: 184 YDWHRLAHKVRKLLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTIIVLIGLLILRV 243

Query: 239 PSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P  + + +IT ++ ++P  G    F    IY+   G+   A  L +   + + +  + + 
Sbjct: 244 PYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVI-VQRQIME 302

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           P ++   I L  L T   L  G +  G LGL IGPV++ L+  + K  +
Sbjct: 303 PKVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVILVLLNTLHKAHV 351


>gi|312278450|gb|ADQ63107.1| Predicted membrane protein of the putative permease (PerM) family
           [Streptococcus thermophilus ND03]
          Length = 392

 Score = 91.8 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 57/360 (15%), Positives = 128/360 (35%), Gaps = 19/360 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYF----------LKGFFAPVLSALIIGFTSWPI---YSSF 51
           +LN Q ++ ++I+ +I +++            +  F   ++  L+I    + +       
Sbjct: 18  ILNNQAVVSFLILLLIGLTVLIFTKISPIFSPVIQFLTIIMLPLVISMLLYYLIKPLVLL 77

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS 111
           + K     T   ++    +  L +  +         ++  L+                  
Sbjct: 78  VEKIGLDRTMAILVIYAILALLLVWGISTAIPNLQDQILILLRNAPSYISRANSETERWL 137

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
            +P            LS   +  +       T+ + +I  FAS    +     ++II   
Sbjct: 138 KLPILSNFHGNLEAMLSDFSARMVNYAENFSTSALSWIGTFASTVARVT----VAIILTP 193

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
             LF+  RD   +     S     F     ++   +   +     G   +AI   ++   
Sbjct: 194 FILFYLLRDSQKLKHSFVSALPTRFRETTVRMLSDINNQLECYVRGQVTVAIIIAIMFCI 253

Query: 232 AYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
            + + G+   +  G++   + MIP  G+ I+   V I  L++G       L ++  IE  
Sbjct: 254 MFKIVGLRYGMTFGILAGFLNMIPYLGSFIAMVPVVIMGLVQGPTMLIKVLIIF-VIEQT 312

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           I  + + P ++G  + +  +   F L+      G+ G+ +G  + A + VI K+     +
Sbjct: 313 IEGRFVSPLVLGNKLSIHPITIMFILLTAGSLYGVWGVLLGIPIYASVKVIVKDIFDWYR 372


>gi|308068357|ref|YP_003869962.1| Predicted permease [Paenibacillus polymyxa E681]
 gi|305857636|gb|ADM69424.1| Predicted permease [Paenibacillus polymyxa E681]
          Length = 372

 Score = 91.8 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 60/350 (17%), Positives = 128/350 (36%), Gaps = 12/350 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +++  +L+S+Y L     P L A ++ +   P+     +K          ++    +  
Sbjct: 16  AIVIVALLLSIYALFPLIYPFLFAWLVAYAMNPLVGFLRNKARMPRWTAVTVSLFVYLGG 75

Query: 74  FIVPLLFLFYYGMLEMKELVSKVV-LANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
             + L       + E+ +L         +       W           E+      +P  
Sbjct: 76  IAIILSAAITRMVREVIKLAMTFDGHIERFKSLFIDWTQSDLIQNVIIEINHFIRDNPDY 135

Query: 133 LKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSI-------IFMIIALFFFYRDGFS 183
              ++    KT       +    ++F    L+   S+       + +++A FF  +D   
Sbjct: 136 QHTINSNIDKTTQTVSSAVTTLVAQFFNGVLNLLTSLPNMGAVLMVIVLAAFFISKDWDR 195

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
            S+ L +            I   + K +        II     L +    ++  V S   
Sbjct: 196 HSRMLSNTIPDTIRKPLSDIWHDLRKALYGYLRAQFIIISITALTVIVGLFILRVESAFT 255

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           +G++  ++ ++P  G  I      +Y  + GN+     L +   I L I  + + P ++ 
Sbjct: 256 IGLMIGLVDLLPYLGVGIVMIPWILYAYMSGNLALGVGLSI-LYIILLIGRQIVEPKVLA 314

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             + L  LPT  G+  G++  G+LGL IGPV + ++  + + +++    N
Sbjct: 315 SSVGLNPLPTLIGMFIGLKLFGVLGLIIGPVSLIVVDALNRANVIQDLRN 364


>gi|324992095|gb|EGC24017.1| permease [Streptococcus sanguinis SK405]
 gi|324994189|gb|EGC26103.1| permease [Streptococcus sanguinis SK678]
 gi|327490609|gb|EGF22390.1| permease [Streptococcus sanguinis SK1058]
          Length = 365

 Score = 91.8 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 63/351 (17%), Positives = 125/351 (35%), Gaps = 9/351 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             +   + +  I   L  L   F+P++   ++ F             E+      +  ++
Sbjct: 16  IALALVLYIGNIWSGLQSLTSVFSPIILGGVLAFIFNVPMKKLEDLLEKCRVPQKLQRSL 75

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +++   ++ +L +     + +  L + V   ++    V   ++                 
Sbjct: 76  ALVLEVLILVLIMTGIVSIVVPTLTTAVNQLSETIGKVAPQVAKW----LQQSGLLSSSQ 131

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                K L  + +    I  +         IF ++  S+I  I  +F F      +    
Sbjct: 132 LKDLTKQLQNSDIVNRAISLLGSLTGNISAIFGNFF-SVIMSIFLMFAFLSSKEHLQTIT 190

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRST----FLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             L + L P    K    V  VI  T     +G  I A+  G+++  AY L G+P     
Sbjct: 191 SRLLQVLLPEKAVKRLSYVGSVIVETYDKFLMGQMIEAVIVGILVFIAYSLTGLPYAALT 250

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           GV+  +++ IP   P S  A+    +   + + A            I    + P +VG  
Sbjct: 251 GVLAGVLSFIPYIGPFSACALGAIFIFTDSPWKALLSIAVFQGVQLIEGNVIYPRVVGQS 310

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           + LP L T    + G    GL+G+     + A+I  + +E ++  +E  E 
Sbjct: 311 VGLPTLFTLAAALIGGNLFGLVGMIFFTPIFAVIYRLVREFVVEKEERNES 361


>gi|319892377|ref|YP_004149252.1| UPF0118 membrane protein YrrI [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162073|gb|ADV05616.1| UPF0118 membrane protein YrrI [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 400

 Score = 91.8 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 119/318 (37%), Gaps = 9/318 (2%)

Query: 42  FTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ 101
           +   P+ +  + +   +  +   I  + ++ +  + +  L      +   L+        
Sbjct: 77  YLFNPVIN-LMERYNINRIWGITILFLGIIGMITIAVNLLIPIVSFQFDRLMDNFPNYLN 135

Query: 102 HGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL 161
                   +  IP   + S+ +++       L+    TF      D +      F    +
Sbjct: 136 KLTSFANNMMHIP---FLSDYYSQIEKAVTGLQEKIPTF-----ADGLSSKIRVFAEAVV 187

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
           +  + II +   LFF  +DG    +  + +    F      +   + + + S   G  I+
Sbjct: 188 NITVVIITVPFVLFFMLKDGHRFKEFSNKIVPPKFRKDVHDLLDKMSEQVGSYIQGQIIV 247

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL 281
           +   G++L   Y + G+   + L  I A+ +++P   P    + +I + I  + F    L
Sbjct: 248 SFCIGILLFIGYSIIGLDYALILASIAAVTSVVPYLGPTIAISPAIIISIITSPFMLIKL 307

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            +      FI    + P ++G  +K+  L   F L+     +G++G+ +G    A++ V+
Sbjct: 308 IVVWTAVQFIEGHFISPNIMGKTLKIHPLTIIFVLLSAGNLLGVVGVILGIPSYAILKVL 367

Query: 342 WKESIMAIKENKEKISSN 359
                +  K    K  ++
Sbjct: 368 VSHIFLLFKRRYNKYYAD 385


>gi|116492395|ref|YP_804130.1| permease [Pediococcus pentosaceus ATCC 25745]
 gi|116102545|gb|ABJ67688.1| Predicted permease [Pediococcus pentosaceus ATCC 25745]
          Length = 376

 Score = 91.8 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/337 (17%), Positives = 118/337 (35%), Gaps = 8/337 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P++ A  + +   P+       + +       +A V V  LFI  +++     
Sbjct: 40  FISTVFMPIILATFLYYMLNPLVKLLTKVRYKKFKIPRTLAIVIVFVLFITLIVWGISSF 99

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
              +  L+ +V     +   + + L      +       K    P    I SE  +    
Sbjct: 100 ---LPNLIDQVSQMLGNLPYIVKRLQKTVPQLLEHSWLKKIDFAPFIKNINSE--IGKYA 154

Query: 146 IDFIPRFASRFG---MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
             F+   A   G       +  + +I + I LF+  +DG+ +   +  +  H        
Sbjct: 155 EGFLAGTALHIGNLISTLTNATVVVITVPIILFYMLKDGYKLIPTVAQVVPHRNRKNVVD 214

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   +   + S   G  I  +  G      Y +   P  + LGVI  I  +IP   P   
Sbjct: 215 LFNTMSDTLSSYISGQVIECLFVGTFTVIGYMIIQQPYGLLLGVIAGICNIIPYVGPYFG 274

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              S+ + I  +      + +   I   +    + P ++G  +++  L     L+   + 
Sbjct: 275 IFPSLLVAIAQSPGQVVSVIIVVLIVQQVDGNFIYPNVIGKSLQIHPLTIIILLLVAGKI 334

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            G+LG+ +     A++ V+        K ++E I   
Sbjct: 335 SGILGMILAVPAYAIVKVLINFIHHIWKLDQETIEEK 371


>gi|323464519|gb|ADX76672.1| conserved membrane protein, putative [Staphylococcus
           pseudintermedius ED99]
          Length = 400

 Score = 91.8 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 119/318 (37%), Gaps = 9/318 (2%)

Query: 42  FTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ 101
           +   P+ +  + +   +  +   I  + ++ +  + +  L      +   L+        
Sbjct: 77  YLFNPVIN-LMERYNINRIWGITILFLGIIGMITIAVNLLIPIVSFQFDRLMDNFPNYLN 135

Query: 102 HGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL 161
                   +  IP   + S+ +++       L+    TF      D +      F    +
Sbjct: 136 KLTSFANNMMHIP---FLSDYYSQIEKAVTGLQEKIPTF-----ADGLSSKIRVFAEAVV 187

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
           +  + II +   LFF  +DG    +  + +    F      +   + + + S   G  I+
Sbjct: 188 NITVVIITVPFVLFFMLKDGHRFKEFSNKIVPPKFRKDVHDLLDKMSEQVGSYIQGQIIV 247

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL 281
           +   G++L   Y + G+   + L  I A+ +++P   P    + +I + I  + F    L
Sbjct: 248 SFCIGILLFIGYSIIGLDYALILASIAAVTSVVPYLGPTIAISPAIIISIITSPFMLIKL 307

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            +      FI    + P ++G  +K+  L   F L+     +G++G+ +G    A++ V+
Sbjct: 308 IVVWTAVQFIEGHFISPNIMGKTLKIHPLTIIFVLLSAGNLLGVVGVILGIPSYAILKVL 367

Query: 342 WKESIMAIKENKEKISSN 359
                +  K    K  ++
Sbjct: 368 VSHIFLLFKRRYNKYYAD 385


>gi|322368907|ref|ZP_08043474.1| Htr-like protein [Haladaptatus paucihalophilus DX253]
 gi|320551638|gb|EFW93285.1| Htr-like protein [Haladaptatus paucihalophilus DX253]
          Length = 395

 Score = 91.8 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 64/346 (18%), Positives = 120/346 (34%), Gaps = 36/346 (10%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           L +L+ +  F    +  L + + + P+Y     +    S   AV   V  +      +L 
Sbjct: 4   LAALFVIYSFIGTFVFGLFLYYATRPVYRRLQRRIRPRSLAAAVALLVLALPA----ILL 59

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           + Y  ++   EL +    AN   +P P             + +       Q+ + L E  
Sbjct: 60  VAYTLIIAFHELTTVARTANLGALPQP------------VQQYGDISRLAQNPEQLLENA 107

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
             T  I+       ++     +  L +  MI   F+  RD   +S+              
Sbjct: 108 DNTKLIEQAFGSTYKYLAFVGNAALHLFVMIAIAFYLLRDDHKLSRWFHRTFADTGGVL- 166

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA--------GVPSHVALGVITAIMA 252
           +     V     S F G  + A   G +   +Y L         G+P    +G++T + +
Sbjct: 167 EAYVHRVDSDFNSIFFGNILNAFMTGTIGAISYNLLDMAAPPGIGIPYPTVVGLLTGVAS 226

Query: 253 MIP-GGAPISFTAVSIYLLIKG--------NIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           +IP  G  + +  V+  +  +           F A    +   I   I D  LRP++ G 
Sbjct: 227 LIPVVGMKLVYFPVTGVIGAEALMARDPGLLWFPAVFALVSFVIVDTIPDLVLRPYVSGR 286

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
              L         + G    G  G+F+GP+++ L+    K  +  +
Sbjct: 287 --NLHVGMVMLAYIFGPLLFGWYGIFLGPMILVLVVHFVKIVLPEL 330


>gi|329929680|ref|ZP_08283372.1| sporulation integral membrane protein YtvI [Paenibacillus sp. HGF5]
 gi|328935943|gb|EGG32400.1| sporulation integral membrane protein YtvI [Paenibacillus sp. HGF5]
          Length = 372

 Score = 91.8 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 62/368 (16%), Positives = 128/368 (34%), Gaps = 20/368 (5%)

Query: 1   MRETMLNPQGIMRWMI--MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES 58
           M   ML   G   W++  +F+I   +Y L     P L A II +   P  +         
Sbjct: 1   MERLMLKRLGRGVWVLSSIFMIAYLIYVLLPLLYPFLLAWIIAYAMNPCVNLLQRSLRMP 60

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                 ++ +      ++ L       + E   L++     N H      WL+       
Sbjct: 61  RWIAVTLSLLLYFGAALLILTAAVSRLVKE---LIALSQSFNLHIDAWMEWLTAWTQNES 117

Query: 119 ASELWTKHLSHPQSLKILSETFLK--TNGIDFIPRFASRFGMIFLDYCLS---------- 166
              +  +     Q+     +T  +  T     I    +       +  L           
Sbjct: 118 FQNIVNEISRFYQNNPNYHDTINQNITRTTQTIGTAVTDLVTGIFNGILQIIYYLPNLGT 177

Query: 167 -IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
             I ++++ FF        ++ L  L   +       I   + K +        I+    
Sbjct: 178 IFIVVLLSTFFLSNSWERHNRALLRLLPGVIRKPMNYIFSDLKKALFGFARAQLILISIT 237

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLW 284
            +++    +  GV S  ++G++  ++ ++P  G  I     S+Y  +  ++     L + 
Sbjct: 238 AVIVTITLYALGVDSAFSIGLLIGLVDLLPYLGVGIVLIPWSLYAFMSDDLTLGIGLTVL 297

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +I L +V + + P ++   + L  L    G+  G++  G+LGL IGPV + ++    + 
Sbjct: 298 YSIIL-VVRQIMEPKVLASSVGLDPLAALLGMFVGLKLFGILGLIIGPVSLVILDAFHRA 356

Query: 345 SIMAIKEN 352
            +     N
Sbjct: 357 HVFKDLRN 364


>gi|121998980|ref|YP_001003767.1| hypothetical protein Hhal_2201 [Halorhodospira halophila SL1]
 gi|121590385|gb|ABM62965.1| protein of unknown function UPF0118 [Halorhodospira halophila SL1]
          Length = 365

 Score = 91.8 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 126/359 (35%), Gaps = 11/359 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R T  +PQ     ++M + L +L  L    APV++A++I +    +   F         
Sbjct: 8   LRRTFNDPQIAAFIVLMVVGLGALLMLGSILAPVIAAVVIAYLLEGVVRGFERAGVPR-M 66

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              VI  + +    ++ L  L      ++ +LV ++      G  +   L +    +++ 
Sbjct: 67  LAVVIVILFLTTFLVLVLFALIPLLYRQVGQLVDQLPAILAQGQMLLLQLPEHYPQLFSE 126

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
               + L   +             G   +     +  MI     +  + +   +FF  +D
Sbjct: 127 AQIREMLDTARREITDL-------GQRVVASVTVQSLMILGTLVIYAVLVPFLVFFLLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              + Q + +       A+  ++   V + I +   G  I  +    V    + L GVP 
Sbjct: 180 KRLLLQWVSNHMPR-HRAFASEVWLDVDQQIGNYVRGKFIEILIVWAVTYITFSLLGVPF 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRP 298
            + L V T +  +IP  GA +    V++       +       L     + ++D   L P
Sbjct: 239 AMLLAVATGLSVIIPYVGAFVMTVPVALIAYFHFGVSQELVYVLVAYTIIQVLDGNVLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
            L    + L  +     ++      G  G+F    L   I  I K  +   K   ++ +
Sbjct: 299 LLFSEVVNLHPVAIIVSILVFGGIWGFWGIFFAIPLATFIQAIIKAWVRRRKPPDDESA 357


>gi|329946826|ref|ZP_08294238.1| hypothetical protein HMPREF9056_02142 [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328526637|gb|EGF53650.1| hypothetical protein HMPREF9056_02142 [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 440

 Score = 91.8 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 59/343 (17%), Positives = 119/343 (34%), Gaps = 19/343 (5%)

Query: 10  GIMRWMIMFIILVSLYFLK------GFFAPVLSALIIGFTSWPIYSSFISKKEESS-TFL 62
           GI  W+ + II+V              F  +  AL+      P+ + F         TFL
Sbjct: 89  GIGAWLGLGIIIVIGLVFYATSQVIPVFIGLFMALVFTSILQPMVNLFARIMPRYPATFL 148

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A++ T+  +   +    ++      +   L S+          +  +L   P  +   ++
Sbjct: 149 ALLTTIGAIAGLV---TYVVTSVTSQWNSLASQFSDGLDT---IMEFLERGPLHLTQQQV 202

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           + +     Q      + +L++N         S      +D    +   +    FF   G 
Sbjct: 203 YHQL----QLWLRQGQHYLQSNAPSLASEVVSN-ASAVVDVLTVLALALFVTIFFLASGG 257

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + +   +           + +            G  ++A+ + ++ G    L G+P   
Sbjct: 258 RMWRWFLNELPATMRESTHRAAGAGWYTFAGYARGTVLVALTDAIMAGIFLQLVGIPLAA 317

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  I A IP  GAP++     +  L  G       + +  A    I    L+P ++
Sbjct: 318 PLAVLVFIGAFIPIIGAPLAMLVAMVVALASGGFVTMIVVGVGVAGIGQIEGHILQPLIM 377

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           G  + L  +    G+  G    GLLG  +   L+++   ++ E
Sbjct: 378 GRQVSLHPVVVIIGVALGTYASGLLGAIVAVPLISVAWSVYSE 420


>gi|260598868|ref|YP_003211439.1| putative permease perM [Cronobacter turicensis z3032]
 gi|260218045|emb|CBA32761.1| Putative permease perM [Cronobacter turicensis z3032]
          Length = 354

 Score = 91.8 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/356 (16%), Positives = 120/356 (33%), Gaps = 14/356 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +P+ I    I+      L+FL G  AP+L A+++ +   WP     + +   S  
Sbjct: 10  RRRFSDPEAIALLAILVAGFCILFFLHGLLAPLLVAIVLAYLLEWPTSR--LQRIGCSRG 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A +  V  + + +V    +      +   L+  +         +  + + +P    A 
Sbjct: 68  LAATLVLVLFIGIVLVMAFVVVPVAWQQGIYLIRDIPGMLNK---LSDFAATLPKRFPAL 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                  +  ++++    T       D + +++    +  L   + +I + + +FF  +D
Sbjct: 125 MDAGIIDAIAENMRTRIITL-----GDSVVKYSLASLVGLLTLAIYLILVPLMVFFLVKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +         +    +  +V  +   G  +  I  G+     + + G+  
Sbjct: 180 KEQLLNAVRRVLPRNRGLAGQVWVEMNQQVT-NYIRGKVLEMIVVGVATWIGFLIFGLNY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V+  I  +IP  GA +    V  + L   G        F    I   +    L P
Sbjct: 239 SLLLAVLVGISVLIPYIGAFMVTIPVVCVALFQFGMGTEFWSCFAVYLIIQGLDGNVLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            L    + L  L     +V      G  G+F    L  LI  +           +E
Sbjct: 299 VLFSEAVNLHPLVIILSVVIFGGLWGFWGIFFAIPLATLIKAVAHAWPETTPTAQE 354


>gi|71735238|ref|YP_275850.1| permease [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|257485897|ref|ZP_05639938.1| permease, putative [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289628379|ref|ZP_06461333.1| permease, putative [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289648133|ref|ZP_06479476.1| permease, putative [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298487972|ref|ZP_07006011.1| Putative permease often clustered with de novo purine synthesis
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|71555791|gb|AAZ35002.1| permease, putative [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|298157523|gb|EFH98604.1| Putative permease often clustered with de novo purine synthesis
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|320327589|gb|EFW83601.1| permease, putative [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330866056|gb|EGH00765.1| permease [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|331013494|gb|EGH93550.1| permease [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 357

 Score = 91.8 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 54/343 (15%), Positives = 131/343 (38%), Gaps = 14/343 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +++  +  L     P L AL++ +   P+                   T+SV+ +F +
Sbjct: 13  LALLVAFVVLLHTILTPFLVALLLAYMGDPLVDRLERAGLSR--------TLSVVAVFGL 64

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLK 134
             L L    ++ +  L  ++    +    +  WL    +P       L        +   
Sbjct: 65  FTLVLMALLLVLVPMLAKQLFRLYELAPQILDWLQHSALPWVQAKFGLADGFWKFDKIKA 124

Query: 135 ILSETFLKT-NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            +SE   +  + +  +   A+   +  + +  +++ + +  F+  RD   ++ ++  L  
Sbjct: 125 AISEHMGQAGDIVSVVLSQATASSLALIGWLTNLVLIPVVCFYLLRDWDIMTGKIRGLLP 184

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   K++    +V+ +   G  ++ +G G++  +   L G+   + +GVI  + A+
Sbjct: 185 RQREGQIVKLAGECHEVLGAFIRGQLLVMVGLGVIYAAGLMLVGLELGLLIGVIAGLAAI 244

Query: 254 IPGGAPISFTA---VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +P    +       V+      G+++    +     I   +    L P LVG  I L  +
Sbjct: 245 VPYMGFVIGIGSALVAGLFQFGGDLYPMMGIVAVFMIGQALEGMVLTPLLVGDRIGLHPV 304

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              F ++ G    G  G+ +   + A+I V+ +      K+++
Sbjct: 305 AVIFAILAGGELFGFTGILLALPVAAVIMVLVRHMHDVYKDSE 347


>gi|319939440|ref|ZP_08013800.1| membrane protein [Streptococcus anginosus 1_2_62CV]
 gi|319811426|gb|EFW07721.1| membrane protein [Streptococcus anginosus 1_2_62CV]
          Length = 392

 Score = 91.8 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 54/336 (16%), Positives = 118/336 (35%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI +  L F+     PV+ A ++ +   PI   F+ K + +      I  + +  L I
Sbjct: 42  ISFIFIPVLEFIGVIMLPVILAGLLYYLLNPIVD-FMEKHKINRLVAITIVFILIALLLI 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      +    Q    + +   +            + +++      
Sbjct: 101 WGLAVAIPSLQHQIVSFAKNLPANLQKSNKIIQDFLENRISDDVKPQLEEIVNNFSVQVT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              +   +  ++++    S    +     ++II M   LF+  RDG ++   L       
Sbjct: 161 TWASNFSSKAVNWVSTLISTASQV----IVAIIIMPFILFYLLRDGKNLKSYLTKFMPTK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F     +I   V   + +   G   +AI   ++    + + G+   V LGV   I+ +IP
Sbjct: 217 FREPVGQILTDVNTQLANYVRGQVTVAIIVAIMFIIFFKVIGLRYAVTLGVTAGILNLIP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPIMLLKVIVVFIVEQTIEGRFVSPLILGSQLNIHPINVLFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      G+ G+ +G  + A   V+        K+
Sbjct: 337 LLTAGSMFGIWGVLLGIPVYASAKVVIAAIFKWYKK 372


>gi|281417731|ref|ZP_06248751.1| sporulation integral membrane protein YtvI [Clostridium
           thermocellum JW20]
 gi|281409133|gb|EFB39391.1| sporulation integral membrane protein YtvI [Clostridium
           thermocellum JW20]
          Length = 360

 Score = 91.8 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 59/316 (18%), Positives = 113/316 (35%), Gaps = 4/316 (1%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  +FAP L A  I     P+    + K +    F A+++ +  + +  + LL LF    
Sbjct: 28  LAIYFAPFLIAFAISSMIEPVIRFLMKKLKFRRKFAALVSLLLGLSMIAILLLMLFSKLY 87

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E+  L S      +        L  I  G+         ++   S  + S +   ++ +
Sbjct: 88  NEITSLSSSQPEFWKEAYQNISNL--INRGLNIYFGLPSEVTAQISNMVSSLSNSVSSLV 145

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
           D   +      +      + I   I++ +F   D   I   +              I   
Sbjct: 146 DSFVKGIYNTAISIPQMVIFIFVTILSTYFISSDRDRIYDYIKDNVPDALLNKIIDIKDS 205

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAV 265
           +   +        I+       L   + + GV   + LG++ + +   P  G        
Sbjct: 206 MFTALFGYVKAQLILMTITFCELSLGFTIIGVKRPILLGLVISFIDAFPVLGTGGVLVPW 265

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +IY  +  +I     L +   I L ++ + + P +VG  I L  L T   +  G++  GL
Sbjct: 266 AIYEFLTKDIRMGVSLLILYVIVL-VIRQMIEPKVVGEQIGLHPLMTLITMYLGMKFFGL 324

Query: 326 LGLFIGPVLMALIAVI 341
            GL +GP++  +   I
Sbjct: 325 PGLILGPIVTLIFKNI 340


>gi|238783850|ref|ZP_04627868.1| permease perM [Yersinia bercovieri ATCC 43970]
 gi|238715237|gb|EEQ07231.1| permease perM [Yersinia bercovieri ATCC 43970]
          Length = 362

 Score = 91.8 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/356 (15%), Positives = 120/356 (33%), Gaps = 14/356 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +PQ I   +I+      LYF  G  AP+L+A+++ +   WP     + +   S  
Sbjct: 18  RRRFTDPQVIALLVILLAGFCILYFFSGILAPLLAAIVLAYLLEWPTAR--LQRIGCSRL 75

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           + A I  V    + ++ +  +      +   L+S +           + L          
Sbjct: 76  WAATIVLVVFGGITLLAVFVVAPTVWQQGNNLISDMPKMLNKFNAFAQTLPS-------- 127

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                  +    +   +     +   + + +F+    +  L   + +I + + LFF  +D
Sbjct: 128 RYPALVDAGIVDMMAENLRNKLSGMGESVVKFSVASLIGLLTLAIYLILVPLMLFFLLKD 187

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +         +     + + I +   G  +  +  G+     +++ G+  
Sbjct: 188 KEQMLNAVRRVLPRNRGLAGQVWLE-MNQQITNYIRGKVVEMVVVGIATYLVFFIMGMNY 246

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTLRP 298
            + L V+     +IP  GA I    V +  L +  +      LF+   +   +    L P
Sbjct: 247 SLLLAVLVGFSVLIPYIGAVIVTIPVVLVALFQWGLGADFWTLFVAYLVVQGLDGNLLVP 306

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            L    + L  L     ++      G  G+F    L  L+  +       +    +
Sbjct: 307 VLFSEAVNLHPLVIILSVIIFGGMWGFWGVFFAIPLATLVKAVIHAWPEELALEAD 362


>gi|153845273|ref|ZP_01993756.1| hipothetical membrane protein [Vibrio parahaemolyticus AQ3810]
 gi|149745127|gb|EDM56378.1| hipothetical membrane protein [Vibrio parahaemolyticus AQ3810]
          Length = 247

 Score = 91.8 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 74/221 (33%), Gaps = 6/221 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  +++ +   ++ F  PV+   II     P+               A    +  + L 
Sbjct: 2   LIFVLLMFTYDIIRPFILPVIWGAIIAVALLPLTKKLQRAYGGRRGLAATTIVLLGIALL 61

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
           + PL+ +    +      +  +             ++D P  G    E+WT   ++ +  
Sbjct: 62  VTPLVMVSGSIVDGATHALDVLQNGQVKIPGPKASVADWPLVGDKLYEVWTLFATNLEQA 121

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                  +K+     +       G + L      I      +       S++  L ++  
Sbjct: 122 IQTFMPQIKSALTSLLGMVGGVLGSLLLSILSLAIAAGFMTY-----SESLASGLQTIAI 176

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
                  K  + ++   I+S  LG+  +A  + L++G+ + 
Sbjct: 177 RTAGENAKSWTTLIAATIKSVLLGVVGVAAIQALLIGAGFL 217


>gi|21243684|ref|NP_643266.1| permease [Xanthomonas axonopodis pv. citri str. 306]
 gi|21109264|gb|AAM37802.1| permease [Xanthomonas axonopodis pv. citri str. 306]
          Length = 388

 Score = 91.8 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/330 (15%), Positives = 127/330 (38%), Gaps = 12/330 (3%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           +L  +  L     P + AL++ +   P+          S     V+  V    LF++ L+
Sbjct: 25  VLWVVSLLAPILTPFVLALLLAWLGDPLVDRIERA-GRSRNVAVVLVFVLATLLFVLALM 83

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            L      ++  L+  +       I      + IP     + +       P+ L     +
Sbjct: 84  ILVPMIERQIMTLIDALPQMRNWAIG-----TAIPWLEAKTGMQLMAWLDPERLIDWIRS 138

Query: 140 FLKTNGI--DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
             +  G     +  + SR G   + + +++  + I  F+F RD   + +++ ++    + 
Sbjct: 139 HWEQAGGAAKTLFGYVSRSGFAMVTWVINLALLPILAFYFLRDWDRLVERVAAVIPRAYI 198

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-- 255
               ++++    V+     G  ++ +  G +  +   + G+   + +G+I  +++ IP  
Sbjct: 199 GTASRLAQESNDVLGGFIRGQFLVMLALGAIYATGMSIIGLNLGLLIGIIAGLISFIPYL 258

Query: 256 -GGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
                I    ++  +  +G ++     + +   +   +    L P +VG  I L  +   
Sbjct: 259 GATTGIVLALLAAIVQAQGLDLKLLIGVGVVFTVGQLLESYVLTPRIVGDKIGLHPVAVI 318

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           F ++ G +  G LG+ +   + A+  V+ +
Sbjct: 319 FAVMAGGQLFGFLGMLLALPVAAVANVLLR 348


>gi|320114881|ref|YP_004185040.1| sporulation integral membrane protein YtvI [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|319927972|gb|ADV78657.1| sporulation integral membrane protein YtvI [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 354

 Score = 91.8 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/349 (14%), Positives = 126/349 (36%), Gaps = 6/349 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R   +  + ++   +  I  + ++ +  F  P + AL++     P  +    K +    
Sbjct: 6   LRYGDIIKKTLLIVAVFIIFYLIIFKIIPFLMPFVVALLLAVIIDPGVNFLEKKLKVPRG 65

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             + I  + ++ +    +       + E+  L     ++  +   +   + ++   +   
Sbjct: 66  LASFILLLILIGVIGSLIAISITQLIYELSSL---AEISTNYANTINDIILNLVDRIRMY 122

Query: 121 EL-WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            +    +++      + S     +     +  +   F     ++    +  ++A FF  +
Sbjct: 123 YISLPPNITSLIESNMQSILNYVSLFAKNLATWLLNFATKLPNFFFMTLITLVATFFISK 182

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D   I   +       +  + K I   + K        +  I +   L +     + G  
Sbjct: 183 DKQLILDFIKRQIPSHWAQHAKSIQVNLLKTFFGYLRAVATIMLITFLEVSIGLAMIGFD 242

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
               LG++  I+  +P  G+       ++Y +I  N      L +   + + +V + + P
Sbjct: 243 YPFLLGLLVTIVDALPVLGSGAVMVPWALYNIIMKNYMVGIYLLILYGLVV-VVRQIIEP 301

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            +VG  I L  L T   +  G +  G LGL IGPV + +   + +  I+
Sbjct: 302 KIVGQSIGLHPLVTLLSMFIGAKLFGALGLIIGPVFVVVFKALQRAEII 350


>gi|146308016|ref|YP_001188481.1| hypothetical protein Pmen_2994 [Pseudomonas mendocina ymp]
 gi|145576217|gb|ABP85749.1| protein of unknown function UPF0118 [Pseudomonas mendocina ymp]
          Length = 360

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/324 (15%), Positives = 125/324 (38%), Gaps = 14/324 (4%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
               +P L  +++ +   P+       +   +  + ++ T+          L L    ++
Sbjct: 24  HPILSPFLIGILLAYLGDPLVDRLERHRLSRTGGVVLVFTLF--------ALVLLIMLLV 75

Query: 88  EMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLKILSETFLKT-N 144
            +  L  ++V   Q    +  WL    +P       L    L   Q  ++ S+   KT +
Sbjct: 76  LVPMLGRQLVRLYQLAPEMLDWLQGTALPWSQSHLGLQNDLLQVDQLKQVFSDNIGKTTD 135

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            +  +   A+  G+  L +  +++ + +  F+  RD   + +++  L      A   K++
Sbjct: 136 VLRAVLAQATSSGLALLAWLGNLLLIPVVSFYLMRDWDVLVERVRRLLPRQREALAVKLA 195

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
               +V+ +   G  ++ +   ++  +   L G+   + +GV+  +  ++P    I    
Sbjct: 196 GECHEVLGAFLRGQLLVMLALSIIYSAGLMLVGLELGLLIGVLAGLANIVPYMGFIVGIG 255

Query: 265 VSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
            ++   +     + +    + +   +   +    L P LVG  I L  +   F ++ G +
Sbjct: 256 AALTAALFQFGLDPYPLLGIGVVFMVGQMLEGMLLTPLLVGDRIGLHPVAVIFAILAGGQ 315

Query: 322 TMGLLGLFIGPVLMALIAVIWKES 345
             G  G+ +   + A+I V+ + +
Sbjct: 316 LFGFTGVLLALPVAAVIMVLLRHA 339


>gi|325693704|gb|EGD35623.1| permease [Streptococcus sanguinis SK150]
          Length = 366

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 69/354 (19%), Positives = 127/354 (35%), Gaps = 29/354 (8%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----------EESSTFLAVIATVS 69
           I   L  L   F+P++   ++ F                          +  L V+  V 
Sbjct: 27  IWSGLQSLTSVFSPIILGGVLAFIFNVPMKKLEDLLDKCRVPQKLQRGLALVLEVLILVL 86

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +M   +  ++      + ++ E + KV         V +WL     G+ +S         
Sbjct: 87  IMTGIVSIVVPTLTTAVNQLSETIGKVA------PQVAKWLQQ--SGLLSSSQLKDLTKQ 138

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            Q+        +    I  +         IF ++  S+I  I  +F F      +     
Sbjct: 139 LQNSD------IVNRAIYLLGSLTGNISAIFGNFF-SVIMSIFLMFAFLSSKEHLQTITS 191

Query: 190 SLGEHLFPAYWKKISRIVPKVIRST----FLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            L + + P    K    V  VI  T     +G  I A+  G+++  AY L G+P     G
Sbjct: 192 RLLQVMLPEKAVKRLSYVGSVIVETYDKFLMGQMIEAVIVGVLVFIAYSLTGLPYAALTG 251

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           V+  +++ IP   P S  A+    +   + + A            I    + P +VG  +
Sbjct: 252 VLAGVLSFIPYIGPFSACALGAIFIFTDSPWKALLSIAVFQGVQLIEGNVIYPRVVGQSV 311

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            LP L T    + G    GL+G+     + A+I  + +E ++  +E K + S++
Sbjct: 312 GLPTLFTLAAALIGGNLFGLVGMIFFTPIFAVIYRLVREFVVEKEEKKAEGSAS 365


>gi|268679040|ref|YP_003303471.1| hypothetical protein Sdel_0399 [Sulfurospirillum deleyianum DSM
           6946]
 gi|268617071|gb|ACZ11436.1| protein of unknown function UPF0118 [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 346

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/323 (15%), Positives = 108/323 (33%), Gaps = 24/323 (7%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           + F   +  A ++   ++ I        +      A+++T  +  L   PL++       
Sbjct: 24  QPFLMIIAIASLLAMATYTINFKLYKLTKNRH-IAAILSTSLLSLLLFGPLIYSLTSIGS 82

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
                   ++   QH +    +    P     S           SL     T        
Sbjct: 83  IANNFDFAMIEKVQHYLKTLDYQLPTPFAFMQS-----------SLDEFINTLNIAQMSS 131

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
               +    G     +   ++ +++  FF   +G  +   + S+   L       +   V
Sbjct: 132 TALSYLGSLGKNSAGFLKDMLLIVVFFFFALLNGKDLIDYIKSVMP-LGAQEVNMVFAEV 190

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVS 266
             V+      +   AI +G++        G    + LG+     ++IP  G  + +  + 
Sbjct: 191 TSVMSVVLYSILFSAIFQGMLFSFIGMYFGYDG-LLLGIFYGFASLIPVIGGALMWIPLC 249

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVG--------GPIKLPFLPTFFGLV 317
              +  GN  +A  + L+  + + I+ D  ++P ++          P  +  L  FF + 
Sbjct: 250 ALEIAHGNTTSAIIIALYSIVIISIIADTFVKPLIIKYINDKMVKTPTMVNELLIFFAIF 309

Query: 318 GGVRTMGLLGLFIGPVLMALIAV 340
            G+ T G  G+ +GP +  L   
Sbjct: 310 AGLTTFGFWGMILGPAITTLFIS 332


>gi|222085484|ref|YP_002544014.1| permease protein [Agrobacterium radiobacter K84]
 gi|221722932|gb|ACM26088.1| permease protein [Agrobacterium radiobacter K84]
          Length = 376

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/328 (14%), Positives = 111/328 (33%), Gaps = 11/328 (3%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T L  Q     +++ I +V LY       P ++ + + +   P+      +   S     
Sbjct: 8   TSLKRQVTFWVVVLAIFIVFLYLFSSILLPFIAGMAVAYFLDPVADRLE-RIGLSRLMAT 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           V+  V+ +  F + L  +    + +  + V  +    Q    +      +    W     
Sbjct: 67  VVILVAFVLFFALALTIVIPIIINQFNDFVQHIPGYVQQLQQLIAKTQTMVLPDWVRNQL 126

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +  ++     +F+       +       G   ++    ++   +  F+   D   
Sbjct: 127 GVIKDNFSNIMSEGLSFVGG-----LFAQIWSSGKALVNIISLMVVTPVVAFYMLLDWDR 181

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  ++D+       A  ++I+  + + I     G   + I  G+  G    L G+   + 
Sbjct: 182 MIAKVDAWVPRDQVATVRQIATEIDQSIAGFIRGQGSLCIILGVYYGVGLSLVGLNFGLL 241

Query: 244 LGVITAIMAMIPGGAPIS----FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           +G    +++ IP    +       +V++       I+    L ++     F+    L+P 
Sbjct: 242 IGFFAGMISFIPYVGSLVGLFIAVSVALVQFWPDYIWVGLTLAVFFTG-QFLEGNVLQPK 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           LVG  + L  +   F L       G +G
Sbjct: 301 LVGESVGLHPVWLMFALFAFGALFGFVG 328


>gi|149275890|ref|ZP_01882035.1| transport protein [Pedobacter sp. BAL39]
 gi|149233318|gb|EDM38692.1| transport protein [Pedobacter sp. BAL39]
          Length = 363

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/321 (14%), Positives = 116/321 (36%), Gaps = 16/321 (4%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            LYF   F  PV  A +       + +   SK          +A+   + LF++ +  + 
Sbjct: 20  GLYFAAEFLIPVALAAVFSMLFIRLCNWLESKGMGR-----GLASFLCILLFVLTVAAIV 74

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                ++  +V  +    +    +   L          + + + +    + +        
Sbjct: 75  LLLSWQLSGMVENMDDMKKRLTALLSNLQ---------QWFQQQVGISPTQQEELVKQQG 125

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            +         + F    +   ++ I +++ +F F  +   I + +  L           
Sbjct: 126 QSAGSGTGSMLANFAGSIMGILVNTILVLVYMFLFLFNRSHIKKFILKLVPQDEKGKADL 185

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           I     KV +    G+  + +   ++ G  + + GV   +   V+  I+ +IP    ++ 
Sbjct: 186 IVHRAGKVSQQYLSGLGAMIVVLWIMYGIGFSIVGVEGALFFAVLCGILEIIPFVGNLTG 245

Query: 263 TAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
           T++++  ++   G+      + +   +  F+    L P +VG  + +  L T   +V G 
Sbjct: 246 TSLTVLSVVVQGGDSKMIIGVLVTYGLVQFLQTYILEPLIVGEQVNINPLFTILVIVLGE 305

Query: 321 RTMGLLGLFIGPVLMALIAVI 341
              G+ G+ +   L+ ++ +I
Sbjct: 306 MVWGIAGMILAIPLLGIVKII 326


>gi|311898142|dbj|BAJ30550.1| hypothetical protein KSE_47700 [Kitasatospora setae KM-6054]
          Length = 481

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 98/292 (33%), Gaps = 13/292 (4%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
           ++ +     +  A +  ++ +    +   F+F+     +  + ++V       + +  WL
Sbjct: 178 WLRRHGVPRSLAAAMTFLAGLASIALVGWFVFWQVSSNLDSVTTQVQAG---VLKLRGWL 234

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
            + P  +   ++         ++   SE                    I ++    ++  
Sbjct: 235 LNGPFHLTPDQINNFTNQITTAIGKNSEQLTSAGFTGV---------TIAVELLTGVVLT 285

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
               FF   DG  I   +                      + +   G  ++A  + L +G
Sbjct: 286 AFTTFFLLYDGARIWSWVLRGLPRHSRYAMAGAGPKAWATLTAYVRGTVVVAFIDALCIG 345

Query: 231 SAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
               + GVP  + L VI  + A +P  GA ++ T   +  L+   +  A           
Sbjct: 346 IGLGVLGVPMAMPLAVIIFLGAFVPLVGALVTGTIAVLIALVTVGLGKALIALAILVGVQ 405

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            +    L+P ++G  +++  L    G+  G    G+ G  +   L+A+   +
Sbjct: 406 QLEGHILQPLILGRAVRVHPLAVVLGVAAGSILGGIPGAIVAVPLIAVTNTV 457


>gi|325916437|ref|ZP_08178709.1| putative permease [Xanthomonas vesicatoria ATCC 35937]
 gi|325537357|gb|EGD09081.1| putative permease [Xanthomonas vesicatoria ATCC 35937]
          Length = 389

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/330 (15%), Positives = 123/330 (37%), Gaps = 12/330 (3%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           +L  +  L     P + AL++ +   P+          S      +  V    LF++ L+
Sbjct: 25  VLWVVSLLAPILTPFVLALLLAWLGDPLVDRIERA-GRSRNMAVSLVFVLATLLFVLALM 83

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            L      ++  L+  +       I      + IP     + +       P+ L     +
Sbjct: 84  ILVPMIERQIMTLIDALPQMRAWAIS-----TAIPWLEAKTGVELMGWLDPERLIDWIRS 138

Query: 140 FLKTNGI--DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
             +  G        + SR G   + + +++  + I  F+F RD   + +++ ++    + 
Sbjct: 139 HWEQAGGAAKTFFGYVSRSGFAMVTWVINLALLPILAFYFLRDWDRLVERVAAVIPRAYI 198

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-- 255
               +++     V+     G  ++ +  G +  +   + G+   + +G+I   ++ IP  
Sbjct: 199 GTVSRLALESNDVLGGFIRGQFLVMLALGAIYATGLSIIGLNLGLLIGIIAGFISFIPYL 258

Query: 256 -GGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
                I    ++  +  +G ++     + +   +   +    L P +VG  I L  +   
Sbjct: 259 GATTGIVLALLAAIVQAQGLDLKLLIGVGVVFTVGQLLESYVLTPRIVGDKIGLHPVAVI 318

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           F ++ G +  G LG+ +   + A+  V+ +
Sbjct: 319 FAVMAGGQLFGFLGMLLALPVAAVANVLLR 348


>gi|320006939|gb|ADW01789.1| protein of unknown function UPF0118 [Streptomyces flavogriseus ATCC
           33331]
          Length = 371

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/350 (14%), Positives = 116/350 (33%), Gaps = 17/350 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYS---SFISKKEESSTFLAVIATVSV 70
            +++ +  V+L+ L   ++ V+  L++G     +      F+ ++       A   TV  
Sbjct: 25  LLVLVMTAVALWLLGRMWS-VVWPLVVGLLLTTLTWPLTRFLRRRGWPPALAASTVTVLF 83

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +    +  +      +  EL   VV   Q                WAS          
Sbjct: 84  LLVAGGAVALIAVPVASQSGELADGVVEGIQRL------------REWASGPPLNIGDDQ 131

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +    S T    + +  +           ++  ++ +  +  +FF  +DG      L  
Sbjct: 132 ITGAFDSATARVQDSVGSMVTTVVTGVSTVVNGVVTAVLAVFLMFFMLKDGPRFLPWLAR 191

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                       ++      +         + + + +++G   W+ GVP  + L V+T +
Sbjct: 192 QLPGRLATDVPTVAARGWDTLGEFVRSQAYVGLLDAVLIGLGLWIVGVPLVLPLAVLTFV 251

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            A +P  GA  +     +  L+   + +A  +     +   +     +P +    + L  
Sbjct: 252 SAFVPIVGALFAGFVAVLIALVSNGLTDALIVLAIIVVVQQLEGNVFQPMIQSRGLGLHA 311

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                 +  G    G++G  +     ALIAV+W      + E  E+    
Sbjct: 312 AVVLLAVTLGGSLAGIVGSLLAVPAAALIAVVWNYVREQLVEPGEEPEVQ 361


>gi|313683109|ref|YP_004060847.1| hypothetical protein Sulku_1987 [Sulfuricurvum kujiense DSM 16994]
 gi|313155969|gb|ADR34647.1| protein of unknown function UPF0118 [Sulfuricurvum kujiense DSM
           16994]
          Length = 345

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/358 (16%), Positives = 131/358 (36%), Gaps = 28/358 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  +     +++          + F+  ++ A ++  ++  I   F+            +
Sbjct: 1   MKKEYFTLTLLLIASYGIFILYEPFWMSIVVASLLAMSTHHIQMGFLQLTNNR-----FL 55

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP--RWLSDIPGGMWASELW 123
           A++    L  +       Y M  +  ++  +       +      WL+ +P  +   E+ 
Sbjct: 56  ASMLSTLLLGLLFFAPLGYFMFRLSVMLQHLDPVIMSMLEAKLRGWLAHLPPSLSRVEV- 114

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                    ++     F        I  +AS+ G   + +    +F++I  F  +  G  
Sbjct: 115 --------KIEAALTKFDPETLTQHIIAYASQIGSFTMSFLSGTVFILIFYFIAHYYGRD 166

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           I +       H        I   +   +   F  + + A+ EG + G A    G  + + 
Sbjct: 167 IFEFFKRSA-HFPQQESTLIIFEMRSSMSVVFYSILVTAVFEGALFGVAVGYMGY-NGLL 224

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPF-- 299
            G++    ++IP  G  + +   +++ L  G+  NA  + L+  I + ++ D  ++P   
Sbjct: 225 FGIMYGFASLIPVVGGVVMWLPFALFELALGHTENALFITLYTIIVISVIADTFIKPVII 284

Query: 300 ------LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
                 L+    K+  L  FF ++ G+ T G  G+ IGP +  L   + K +    +E
Sbjct: 285 KLINQRLIKPQEKINELIIFFAILAGLATFGFWGMIIGPAITVLFLTLMKITEAQSEE 342


>gi|157693603|ref|YP_001488065.1| hypothetical protein BPUM_2850 [Bacillus pumilus SAFR-032]
 gi|157682361|gb|ABV63505.1| hypothetical membrane protein [Bacillus pumilus SAFR-032]
          Length = 367

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/311 (18%), Positives = 114/311 (36%), Gaps = 6/311 (1%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P+L A I+ F   PI      K     T   +I  +  + L    +       + ++ 
Sbjct: 41  FVPILLAGILFFIFNPIVRFLSKKIP--RTLAILIIYLLFIGLITFIVNAAGPVIISQVG 98

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            LV            + ++++D       + + ++        +    + LK    +   
Sbjct: 99  GLVKSFPGYVT---DMQKFINDFSHSKTFTWMMSQDYVSVSKFEQTVVSTLKALPENIAS 155

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
             ++ FG +  +  L++I +   LF+  +DG     +L       +     KI + +   
Sbjct: 156 SMSAVFG-VIANIALAVITVPFILFYMLKDGHKFPDKLVQFLPMPYRKEGLKIFKELNDT 214

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + +   G  I+ +  G+     Y L GV   + LG+I A+  +IP   P    A ++ + 
Sbjct: 215 LAAYIQGQIIVCLFVGVACFIGYLLIGVKYALILGIIIAVTNVIPYLGPYLGAAPAVLIA 274

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +   A    +   +   I    + P ++G  +    L     L+G     G+LG+  
Sbjct: 275 FLDSPGKAVVTVIVILVVQQIDGNVISPLIIGKRLNTHPLTIILLLIGAGSFGGILGMIF 334

Query: 331 GPVLMALIAVI 341
              + AL+  I
Sbjct: 335 AVPVYALLKAI 345


>gi|300214220|gb|ADJ78636.1| Hypothetical membrane spanning protein [Lactobacillus salivarius
           CECT 5713]
          Length = 376

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/339 (16%), Positives = 119/339 (35%), Gaps = 6/339 (1%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSF----ISKKEESSTFLAVIATVSVMCLFIVPLL 79
           + F    F PV+ +  + +   P+        I K + + T    I  ++V  +  + + 
Sbjct: 35  VAFFSTLFIPVIISGFLYYMLLPLVKLLMKVKIGKFKINRTGAVAIVFIAVFAIIAMSIA 94

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
           FL    +++++ L++K             +   +     +S L    L    +    S +
Sbjct: 95  FLLPKIIVQVENLITKSPTYVSQL--EKNFQHFLKYDSRSSWLKDIDLQSYLNRFEGSGS 152

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            +    +  +            +  ++++ +   LF+  +DG+ +   +         A 
Sbjct: 153 EMIAKFMKSLTNSLGSIISAITNITVTVLTVPFMLFYMLKDGYKLMPSILKFVPRKRTAQ 212

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            + + + +   +     G  I  I  G+     Y LAGVP  +  G+      +IP   P
Sbjct: 213 VEAMLQDMSNTLSKYISGQAIECIFVGICTAIGYGLAGVPYALLTGIFAGATNIIPYIGP 272

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                 ++ L +  +   A    +   I   I    + P ++G  + +  L     L+  
Sbjct: 273 YIGLVPALILSLTDSFNTAVMAIIVCIIVQQIDGNLIYPNVIGKSVDIHPLTIILLLLVA 332

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            +  GLLG+ +     A+I VI K     I    E    
Sbjct: 333 GKIAGLLGIILCIPFYAIIKVIVKHVREVIILENESSDE 371


>gi|308182723|ref|YP_003926850.1| membrane protein [Helicobacter pylori PeCan4]
 gi|308064908|gb|ADO06800.1| membrane protein [Helicobacter pylori PeCan4]
          Length = 349

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 138/363 (38%), Gaps = 25/363 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  Q     + +      +Y  + F    L A ++    + +      +        + +
Sbjct: 1   MKAQYFFWILFLIGFYWMIYLYQDFLMDALIAGLLCVGFFQVKVFLDKRFFN--VISSFL 58

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +  + IVPL F+ Y G   + E+        +    + +WL         +E  + 
Sbjct: 59  CVLVLASVVIVPLYFIVYKGSNVIFEI------NFEKLSALIKWLKG-----TITENLSH 107

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +    +    E F  T+   ++ + +S  G   L      +F++  LFFF+  G    
Sbjct: 108 FPAIHDGVSKFLENFSATSITGYLLKVSSYVGRYSLKLITDALFILGLLFFFFYYGERFY 167

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +   L     KKI   V  ++R   L   I  I EG+  G      G      LG
Sbjct: 168 RYFLGVLP-LGMNQSKKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFGHDGWS-LG 225

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLV-- 301
           ++  + +++P  G  + +  ++IY L  GN+  A  + L+  + +  ++D  ++P L+  
Sbjct: 226 ILYGLASLVPAVGGALIWIPITIYELYHGNVNEAIFITLYSILLISVLIDSVIKPILIVF 285

Query: 302 ------GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                    +K+  +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 286 IKKRIFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345

Query: 356 ISS 358
              
Sbjct: 346 ACE 348


>gi|266619736|ref|ZP_06112671.1| sporulation integral membrane protein YtvI [Clostridium hathewayi
           DSM 13479]
 gi|288868696|gb|EFD00995.1| sporulation integral membrane protein YtvI [Clostridium hathewayi
           DSM 13479]
          Length = 376

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 64/350 (18%), Positives = 128/350 (36%), Gaps = 12/350 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYF-----LKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
             M   +  +  +I F+IL  ++      L   F P L  L +     P+      +   
Sbjct: 12  RRMEGRKRFITNVIYFVILGGIFLFVMKRLVPMFFPFLLGLTVAAVLSPLIRKLCGRTGG 71

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL--SDIPG 115
               +++   +    + ++  LF   + +  ++ L  K+       I     +    I  
Sbjct: 72  KRAPVSIAVLLVFYGILVMAALFSASHIVAFIQNLAGKLPQFYMEVIEPELGILFERIVV 131

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
                + W   +S   SL+   ++ + T     I   AS   + F    +  IF II+ F
Sbjct: 132 SFPEYQDWLSQMS--ASLENALQSGIMTVSGTLIGWGASWI-VGFPAILVQTIFTIISSF 188

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           FF  D   I   +    +        + +      I        ++       L   + L
Sbjct: 189 FFTIDYDRIWDFVLRQFKEERRKMIAETAAGARTTIWKILKVYALMMTITFAELYLGFVL 248

Query: 236 AGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
             +P  + L  + A++ ++P  G        ++ L I G       +F+   I + IV +
Sbjct: 249 LKIPMPLLLAFLVAVVDILPVLGTGTVLIPWALILCIIGKTGLGVGIFILYVI-ITIVRQ 307

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           TL P ++G  + L  + T   +  G + +G+LG+F  PV+  ++  +  E
Sbjct: 308 TLEPKVIGQQVGLHPIVTLLCIFAGAQLIGVLGIFTFPVIATIVKKMNDE 357


>gi|159901056|ref|YP_001547303.1| hypothetical protein Haur_4544 [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159894095|gb|ABX07175.1| protein of unknown function UPF0118 [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 381

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/347 (13%), Positives = 116/347 (33%), Gaps = 8/347 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +++F  +     L         A+++      +   F   +         I  + +  +
Sbjct: 17  TLLIFSGVWITILLNHVLVLFFVAVLLAVAISGVVQRFEQLRIARP-----ITILVIYTI 71

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            I   + L +  +  + + V  +     + +  P   +       A +  T  +  P   
Sbjct: 72  IIAMFISLGFVLVPMVSQQVRLLAEQFPNLVRQPTQQAS---AWLAQQFPTLRVPLPTGD 128

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                       +      A  FG   +   ++ I +++  FF        S  +  +  
Sbjct: 129 LAGQAAHYAGTVVGGFSGAAFTFGRTLMGVIINFIVVLVLAFFLVSRANVASNFIKLMIP 188

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           + F      ++ ++ + +         +A    +  G   W+ GVP  VALGVI  ++ +
Sbjct: 189 NRFQERLINVTNVIGRRLGRWVWAQLTVATFYAVCFGMGLWMLGVPYPVALGVIGGMLEL 248

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP       T +++ +        A  + +   I   I    + P ++G  ++   + T 
Sbjct: 249 IPYVGGFVATILTMLVAFTVQPMLAVWVLVLHLIVGNIEVHIIAPKVMGHAVETHPVITI 308

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
             L  G+  +G++G  I   L  +   + +E  +      +  + + 
Sbjct: 309 LALFSGIELLGIIGGVIAIPLAVVGQALVEEFWIKRIREAQPAAESL 355


>gi|312865058|ref|ZP_07725286.1| putative membrane protein [Streptococcus downei F0415]
 gi|311099169|gb|EFQ57385.1| putative membrane protein [Streptococcus downei F0415]
          Length = 392

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 102/317 (32%), Gaps = 7/317 (2%)

Query: 47  IYSSFISK-KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           +      +          +++ ++ + +  +    +    +  +K LVS  +     G  
Sbjct: 74  LMKKIFRRDIPGKRALSLILSYLTFVIVIFLIFSIVLPDLINSLKALVS--IDIEGLGKL 131

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           V     D     +          +   L       + T  I  +    +          +
Sbjct: 132 VNNVQKDSNVQRFMRYFDIDLNKNVSHLLNQYNRQISTTVIGILTNLLTSV-TNLASGLI 190

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI---SRIVPKVIRSTFLGMTIIA 222
           S+   ++   +       + +Q + L     P Y KK     ++  +     F+G T+ A
Sbjct: 191 SLFISLVFSIYVLAGKEKLGRQGNMLVHAYLPHYEKKFHYVRKVAHESFHGFFVGQTLEA 250

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF 282
              G +      +  +P    +G++    A+IP   P    ++   L+   ++  A    
Sbjct: 251 SILGSLCALGMLIFKIPYPGTIGILVGFTALIPVIGPYIGLSIGAILIATQSVPQAIFFV 310

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           ++  I        + P +VG  I LP +     +  G    G+LGL I     A I  + 
Sbjct: 311 IYLIILQQFEGNLIYPRVVGHSIGLPPMWVILAITIGASFWGVLGLLIAVPSAATIYKLI 370

Query: 343 KESIMAIKENKEKISSN 359
           +  +   K  + +    
Sbjct: 371 RNQVYTKKARETEQKKE 387


>gi|70731784|ref|YP_261526.1| permease [Pseudomonas fluorescens Pf-5]
 gi|68346083|gb|AAY93689.1| permease, putative [Pseudomonas fluorescens Pf-5]
          Length = 357

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/335 (15%), Positives = 123/335 (36%), Gaps = 14/335 (4%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           ++ +    +Y L    +P L AL++ +   P+          S T+  V        + +
Sbjct: 12  VVLLACGFVYLLHPILSPFLVALLLAYLFDPLVDRLEQW-GLSRTWGVVAVFALFTLIVM 70

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSL 133
             LL L      ++  L             +  W+    +P       L        +  
Sbjct: 71  TLLLVLVPMLAKQLVRLYELA-------PQMLDWVQHSAMPWVQSKLGLADGFWKFDKVK 123

Query: 134 KILSETFLKT-NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +SE   +T + +  +   A+  G+  + +  +++ + +  F+  RD   +  ++ SL 
Sbjct: 124 AAISEHMGQTTDIVGVVLSQATASGLALIGWLANLVLIPVVSFYLLRDWDLMMAKIRSLL 183

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                     ++    +V+ +   G  ++ +  G++  +   L G+   + +G+I  + A
Sbjct: 184 PRSREEQVVSLAGECHEVLGAFVRGQLLVMLALGVIYAAGLMLVGLELGLLIGLIAGLAA 243

Query: 253 MIPGGAPISFTAVSIY---LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++P    +     ++        G+++    +     +   +    L P LVG  I L  
Sbjct: 244 IVPYMGFVIGIGAALIAGLFQFGGDLYPMIGIVAVFMVGQALEGMVLTPLLVGDRIGLHP 303

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           +   F ++ G    G  G+ +   + A+I V+ + 
Sbjct: 304 VAVIFAILAGGELFGFTGVLLALPVAAVIMVLVRH 338


>gi|307301008|ref|ZP_07580777.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
 gi|307317742|ref|ZP_07597180.1| protein of unknown function UPF0118 [Sinorhizobium meliloti AK83]
 gi|306896504|gb|EFN27252.1| protein of unknown function UPF0118 [Sinorhizobium meliloti AK83]
 gi|306903963|gb|EFN34549.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
          Length = 379

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/329 (13%), Positives = 112/329 (34%), Gaps = 10/329 (3%)

Query: 3   ETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
            +M   + I  W+++ +  +  L        P L+ + + +   P+      +   S   
Sbjct: 14  SSMGLQRQIFFWLLVLVGFIAFLLVFSSILLPFLAGMALAYFLDPVADRLE-RLGLSRLM 72

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +   V+ + +  + L+ +    + +  E + K+                     W + 
Sbjct: 73  ATIAILVAFVVVLALSLMIIVPLVVTQAAEFIQKMPGYITRLQEFLTDSQSTLLPDWLAG 132

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
             T    +   L     +FL T     + +     G+  L+     +   +  F+   D 
Sbjct: 133 QMTTIKQNSAKLLEQGASFLGT-----LFQQIWNSGLALLNILSLFVITPVVAFYLLLDW 187

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +  ++DS     +    ++I+R +   I     G   + +  GL  G    + G+   
Sbjct: 188 DRMVDRVDSWIPRDYVEVVRQIARDMNTTIAGFVRGQGSLCLILGLYYGIGLTMVGLNFG 247

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRP 298
           + +G+   +++ IP    +    +++ + +     +      +        F+    L+P
Sbjct: 248 LLIGLFAGMISFIPYVGSLVGLVLALGVALVQFWPDYVWILLVLAVFFSGQFLEGNILQP 307

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            LVG  + L  +   F L+      G +G
Sbjct: 308 KLVGKSVGLHPVWLMFALLAFGALFGFVG 336


>gi|238798726|ref|ZP_04642198.1| permease perM [Yersinia mollaretii ATCC 43969]
 gi|238717422|gb|EEQ09266.1| permease perM [Yersinia mollaretii ATCC 43969]
          Length = 362

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 60/357 (16%), Positives = 125/357 (35%), Gaps = 16/357 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +PQ I   +I+      LYF  G  AP+L+A+++ +   WP     + +   S  
Sbjct: 18  RRRFTDPQVIALLVILLAGFCILYFFSGILAPLLAAIVLAYLLEWPTAR--LQRIGCSRL 75

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL-SDIPGGMWA 119
           + A I  V    + ++ +  +      +   L+S +           + L S  P  + A
Sbjct: 76  WAATIVLVVFGGITLLAVFVVAPTVWQQGNNLISDMPKMLNKFNAFAQTLPSRYPALVDA 135

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
             +     +    L  + E+ +K +    I           L   + +I + + LFF  +
Sbjct: 136 GIVDMMAENLRNKLSGMGESVVKISVASLI---------GLLTLAIYLILVPLMLFFLLK 186

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D   +   +  +         +     + + I +   G  +  +  G+     +++ G+ 
Sbjct: 187 DKEQMLNAVRRVLPRNRGLAGQVWLE-MNQQITNYIRGKVVEMVVVGIATYLVFFIMGMN 245

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTLR 297
             + L V+     +IP  GA I    V +  L +  +      LF+   +   +    L 
Sbjct: 246 YSLLLAVLVGFSVLIPYIGAVIVTIPVVLVALFQWGLGADFWTLFVAYLVVQGLDGNLLV 305

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           P L    + L  L     ++      G  G+F    L  L+  +       +  + +
Sbjct: 306 PVLFSEAVNLHPLVIILSVIIFGGMWGFWGVFFAIPLATLVKAVIHAWPEELALDAD 362


>gi|15673797|ref|NP_267972.1| permease [Lactococcus lactis subsp. lactis Il1403]
 gi|12724842|gb|AAK05913.1|AE006411_8 permease [Lactococcus lactis subsp. lactis Il1403]
 gi|326407304|gb|ADZ64375.1| permease [Lactococcus lactis subsp. lactis CV56]
          Length = 371

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 107/314 (34%), Gaps = 4/314 (1%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P + A  + +   P+ +    K          I  + ++ + I  +  +    + ++ 
Sbjct: 42  FVPFIIAGFLYYVFNPVVTFMEEKLRIKKVLGIFIVLLLILGMIIFAIASVIPSLISQLT 101

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE-TFLKTNGIDFI 149
            L   +    +    V  W+  +      ++++ +   +    K+    T +  N ++ I
Sbjct: 102 SL---INATGKAYPQVRAWIEGLQHNPRFAQIYDQLDVNSLVEKLNLSYTDILHNLLNSI 158

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                    I     + +I + I L++  +DG  I   L             ++   +  
Sbjct: 159 TVSVGSIVGIITSIVMVMILVPILLYYMLKDGEKIIPFLKENVLTEDRLNIFELLENMNH 218

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            I     G+ + A+   +V+   Y + G+P      +   +  +IP   P       I  
Sbjct: 219 TISRYISGVALDALLVFIVVFIGYMVLGIPYAFLFALFAGVTNLIPYAGPYIGVLPMIVT 278

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           +       A    ++  +   +    + P +VG  +K+  +     ++      G+LG+ 
Sbjct: 279 VAFNRPVTALIAVIYVLVLQQLDGNLVYPKIVGSAVKVHPVTVMILMLISGSLYGILGMI 338

Query: 330 IGPVLMALIAVIWK 343
           I      L+  I K
Sbjct: 339 IAVPAYCLVKEIVK 352


>gi|304315561|ref|YP_003850706.1| sporulation integral membrane protein YtvI [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777063|gb|ADL67622.1| sporulation integral membrane protein YtvI [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 354

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/353 (14%), Positives = 123/353 (34%), Gaps = 21/353 (5%)

Query: 1   MRETMLNPQGIMRWMIMFI-ILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKK 55
           M++ +   Q  ++ +I+ + +++S Y     L  F  P   AL +     P       K 
Sbjct: 1   MKDFLSRYQSTIKNVIIILAVIISFYLFVFKLIPFLMPFAVALFLAILIDPAVEFLEKKL 60

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
           +      +    + ++ +  + +  L    + E+  L        ++         D+  
Sbjct: 61  KVPRGLSSAFLILLLIAIIGLLISLLITQLVFELNTLAEHAPNYTKN--------FDVVI 112

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDF------IPRFASRFGMIFLDYCLSIIF 169
                 +   ++S P ++    E  L++   +          +         ++    I 
Sbjct: 113 SDLIDRIRIYYISLPTNISTFLENNLQSILNNISVLAKNFAAWILGLATKLPNFFFMSII 172

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
            I++ FF  +D + I   +       +  + + I   + + +         I     + +
Sbjct: 173 TIVSTFFLSKDKWLILNFIKRQFPSNWALHAENIKGDLFQTLIGFIRAEITIMFITFMEV 232

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
                + G      LG++ + + ++P  G+       ++Y +   N      L +   I 
Sbjct: 233 SIGLTIIGFDYAFLLGLLVSFIDILPVLGSGSVLVPWAVYNIFTKNYLIGIYLLILYGI- 291

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           + +V + + P +VG  I L  L T   +  G +  G  GL +GPV + +    
Sbjct: 292 VTVVRQMIEPKIVGQSIGLHPLVTLLSMFIGAKLFGGFGLIMGPVFVVVFKTF 344


>gi|295836752|ref|ZP_06823685.1| permease [Streptomyces sp. SPB74]
 gi|197697625|gb|EDY44558.1| permease [Streptomyces sp. SPB74]
          Length = 444

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 106/307 (34%), Gaps = 19/307 (6%)

Query: 17  MFIILVSLYFLKGFFAP---VLSALIIGFTSWPIYSSFISKKEES---STFLAVIATVSV 70
           + ++  +++ L    +    ++ A ++      +    +++             + T+  
Sbjct: 81  LLVLAATVWVLMKVISAVRLIVLAFVVALLITALLQPLVARLTRHGVPRGLATALTTLFG 140

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             +  +   F+ +  M  + +L S+V    +    + RWL D P  +   ++        
Sbjct: 141 FLVMGLMGWFVVWQIMENVDQLSSQVQDGIE---DLRRWLLDSPFHVTEKQI-------- 189

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
             +       + TN              + ++    ++    +  F   DG  I      
Sbjct: 190 NDIAKNLREAIGTNTNQLTSAGIEGV-TVIVEMFTGLLLAFFSTIFLLYDGKKIWGWFLK 248

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L                   + S   G  I+A+ + + +G   ++  VP  V L VI  +
Sbjct: 249 LVPAAAREGVAGAGPRAWDTLTSYVRGTVIVALIDAVFIGIGIYVLDVPMAVPLAVIIFL 308

Query: 251 MAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            A +P    +   A+++ + L+   ++ A  +     +   I    L+PF++G  +++  
Sbjct: 309 AAFVPLVGAVVSGALAVLVALVTQGVWTAIIVLGVVLLVQQIEGHVLQPFILGRAVRVHP 368

Query: 310 LPTFFGL 316
           L     +
Sbjct: 369 LAVVLSV 375


>gi|323705871|ref|ZP_08117443.1| sporulation integral membrane protein YtvI [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534867|gb|EGB24646.1| sporulation integral membrane protein YtvI [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 354

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 57/353 (16%), Positives = 124/353 (35%), Gaps = 21/353 (5%)

Query: 1   MRETMLNPQGIMR--WMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKK 55
           M++ +   Q  +R   +I+ ++L    F   L  F  P   AL +     P       K 
Sbjct: 1   MKDFLSRYQSTIRNSIVILAVVLSFYLFVFKLIPFLMPFAVALFLAILIDPAVEFSEKKL 60

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
           +      +    + ++ +  + +  L    + E+  L        ++         D+  
Sbjct: 61  KIPRGLSSAFFILLLIGIIGLLISLLVTQLVFELNTLAEHAPSYTKN--------FDVVI 112

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDF------IPRFASRFGMIFLDYCLSIIF 169
                 +   ++S P ++    E+ L++   +          +         ++    I 
Sbjct: 113 SDLIDRIRRYYVSLPTNISTFLESNLQSILNNISVYAKNFAGWILGLATKLPNFFFMSII 172

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
            I++ FF  +D + I   +       +  + + I   + + +         I     L +
Sbjct: 173 TIVSTFFLSKDKWLILNFIKRQFPSNWAFHAENIKGDLFQTLIGFIRAEITIMFITFLEV 232

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
                + G      LG++ + + ++P  G+       ++Y +   N      L +  AI 
Sbjct: 233 SIGLTIIGFDYAFLLGLLVSFIDILPVLGSGSVLVPWALYNIFTKNYLIGIYLLIIYAI- 291

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           + +V + + P +VG  I L  L T   +  G R  G LGL +GPV + +    
Sbjct: 292 VTVVRQMIEPKIVGQSIGLHPLVTLLSMFIGARLFGGLGLIMGPVFVVVFKTF 344


>gi|319939615|ref|ZP_08013974.1| membrane protein [Streptococcus anginosus 1_2_62CV]
 gi|319811204|gb|EFW07510.1| membrane protein [Streptococcus anginosus 1_2_62CV]
          Length = 374

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/339 (15%), Positives = 119/339 (35%), Gaps = 18/339 (5%)

Query: 15  MIMFIILVSLY-----FLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +++  I+  ++      L  F         P L A  + + + P+      + +    F 
Sbjct: 14  VLLLTIIFFIWRQMDGLLSPFVSVLNTVLIPFLIAGFLYYVTNPLVKFLEKELKIKRIFG 73

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            +I  V +  +  + +++L    + ++  L+S    +      +  W++ +      S  
Sbjct: 74  ILITLVLLFGIIALGIIYLLPILITQLTSLIS---SSQNVYGELQNWINQL---SQHSLF 127

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
              ++        LS   +  N ++ +           ++  L +I   I L +F  DG 
Sbjct: 128 KNLNIQSIIKQLNLSYVDILQNILNSVTNSLGSVVSAVVNTFLILIMTPIFLVYFLIDGD 187

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +   L+            K+   +   I     G++I A   G +    Y + G+   +
Sbjct: 188 KLLPMLERTVLKRDKLNITKLLTNLNATIARYISGISIDAFIIGTLAFIGYSVIGLKYAL 247

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              + + I  +IP   P       I   +  +        ++  I   I    L P +VG
Sbjct: 248 IFAIFSMIANLIPYVGPSIGLIPMIITYLIADPKKMVIAVIYMLIVQQIDGNILYPRIVG 307

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           G +K+  +     L+      G++G+ +   + +++  I
Sbjct: 308 GVMKVHPITIMVLLLLSSNIYGIVGMIVAIPIYSILKEI 346


>gi|307265414|ref|ZP_07546970.1| sporulation integral membrane protein YtvI [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|326390340|ref|ZP_08211899.1| sporulation integral membrane protein YtvI [Thermoanaerobacter
           ethanolicus JW 200]
 gi|306919528|gb|EFN49746.1| sporulation integral membrane protein YtvI [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|325993617|gb|EGD52050.1| sporulation integral membrane protein YtvI [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 354

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/349 (15%), Positives = 121/349 (34%), Gaps = 6/349 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R   +  + ++   +  I  + ++ +  F  P + AL+      P  +    K +    
Sbjct: 6   LRYGDIIKKTLLIVAVFIIFYLIIFKIIPFLMPFVVALLFAVIIDPGVNFLEKKLKVPRG 65

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVS-KVVLANQHGIPVPRWLSDIPGGMWA 119
             + I  + ++ +    +       + E+  L       AN     +   +  I      
Sbjct: 66  LASFILLLILIGVIGSLIAISITQLIYELSSLAEISTNYANTINDIILNLVDRI---RMY 122

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                 +++      + S     +     +  +   F     ++    +  ++A FF  +
Sbjct: 123 YVTLPPNITSLIENNMQSILNYISLFAKNLATWLLNFATKLPNFFFMTLITLVATFFISK 182

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D   I   +       +  + K I   + K        +  I +   L +     + G  
Sbjct: 183 DKQLILDFIKRQIPSHWAQHAKNIQVDLLKTFFGYLRAVATIMLITFLEVSIGLAMIGFD 242

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
               LG++  I+  +P  G+       ++Y +I  N      L +   + + +V + + P
Sbjct: 243 YPFLLGLLVTIVDALPVLGSGAVMVPWALYNIIMKNYMVGIYLLILYGLVV-VVRQMIEP 301

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            +VG  I L  L T   +  G +  G LGL IGPV + +   + K  I+
Sbjct: 302 KIVGQSIGLHPLVTLLSMFIGAKLFGALGLVIGPVFVVVFKALQKAEII 350


>gi|290889609|ref|ZP_06552699.1| hypothetical protein AWRIB429_0089 [Oenococcus oeni AWRIB429]
 gi|290480807|gb|EFD89441.1| hypothetical protein AWRIB429_0089 [Oenococcus oeni AWRIB429]
          Length = 394

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/318 (13%), Positives = 100/318 (31%), Gaps = 10/318 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F++  F P++ A  + +   P+                 I     + + I   +      
Sbjct: 39  FIRTIFLPLIVAGFLYYLLHPVVVFLEKHFHFKHLLAVAITFFVFIVILISVFVIFVPQL 98

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  ++  +         +           W    W K L     +  + +   K + 
Sbjct: 99  IAQISNMLGSLPKFVDDMRNMTD--------SWVKSKWFKQLYQDVKISNIQKQISKYSS 150

Query: 146 --IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             ++               + ++II + I LF+   DG      ++             +
Sbjct: 151 TFLEMSLSSLGNIASFLTTFTINIITIPIMLFYMLADGDKFIPFINRFIFPSRSKEVNDL 210

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
           +  +   I     G  I  I     +   Y +   P    LG+   +  +IP   P    
Sbjct: 211 AARMNNTISRYIDGQFIEGIFVMFFITGGYLIIRQPFAPLLGIFAGLCVLIPYLGPFISI 270

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             S+ + +  +      + +   I   +    + P ++G  +K+  L     L+      
Sbjct: 271 IPSLLIALTVSGQQVLAVLVVVLIVSQLDGNLIYPNVIGRNLKIHPLTIIIILLSAGNIW 330

Query: 324 GLLGLFIGPVLMALIAVI 341
           GL+G+ +G  + A++  +
Sbjct: 331 GLIGIILGVPIYAVLRTL 348


>gi|90961351|ref|YP_535267.1| hypothetical protein LSL_0371 [Lactobacillus salivarius UCC118]
 gi|301301071|ref|ZP_07207231.1| putative membrane protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|90820545|gb|ABD99184.1| Hypothetical membrane spanning protein [Lactobacillus salivarius
           UCC118]
 gi|300851341|gb|EFK79065.1| putative membrane protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 376

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/337 (16%), Positives = 118/337 (35%), Gaps = 6/337 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSF----ISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
           F    F PV+ +  + +   P+        I K + + T    I  ++V  +  + + FL
Sbjct: 37  FFSTLFIPVIISGFLYYMLLPLVKLLMKVKIGKFKINRTGAVAIVFIAVFAIIAMSIAFL 96

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               +++++ L++K             +   +     +S L    L    +    S + +
Sbjct: 97  LPKIIVQVENLITKSPTYVSQL--EKNFQHFLKYDSRSSWLKDIDLQSYLNRFEGSGSEM 154

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
               +  +            +  ++++ +   LF+  +DG+ +   +         A  +
Sbjct: 155 IAKFMKSLTNSLGSIISAITNITVTVLTVPFMLFYMLKDGYKLMPSILKFVPRKRTAQVE 214

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            + + +   +     G  I  I  G+     Y LAGVP  +  G+      +IP   P  
Sbjct: 215 AMLQDMSNTLSKYISGQAIECIFVGICTAIGYGLAGVPYALLTGIFAGATNIIPYIGPYI 274

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               ++ L +  +   A    +   I   I    + P ++G  + +  L     L+   +
Sbjct: 275 GLVPALILSLTDSFNTAVMAIIVCIIVQQIDGNLIYPNVIGKSVDIHPLTIILLLLVAGK 334

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             GLLG+ +     A+I VI K     I    E    
Sbjct: 335 IAGLLGIILCIPFYAIIKVIVKHVREVIILENESSDE 371


>gi|330986708|gb|EGH84811.1| permease [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 357

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/343 (15%), Positives = 130/343 (37%), Gaps = 14/343 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +++  +  L     P L AL++ +   P+                   T+SV+ +F +
Sbjct: 13  LALLVAFVVLLHTILTPFLVALLLAYMGDPLVDRLERAGLSR--------TLSVVAVFGL 64

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLK 134
             L L    ++ +  L  ++    +    +  WL    +P       L        +   
Sbjct: 65  FTLVLMALLLVLVPMLAKQLFRLYELAPQILDWLQHSALPWVQAKFGLADGFWKFDKIKA 124

Query: 135 ILSETFLKT-NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            +SE   +  + +  +   A+   +  + +  +++ + +  F+  RD   +  ++  L  
Sbjct: 125 AISEHMGQAGDIVSVVLSQATASSLALIGWLTNLVLIPVVCFYLLRDWDIMIGKIRGLLP 184

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   K++    +V+ +   G  ++ +G G++  +   L G+   + +GVI  + A+
Sbjct: 185 RQREGQIVKLAGECHEVLGAFIRGQLLVMVGLGVIYAAGLMLVGLELGLLIGVIAGLAAI 244

Query: 254 IPGGAPISFTA---VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +P    +       V+      G+++    +     I   +    L P LVG  I L  +
Sbjct: 245 VPYMGFVIGIGSALVAGLFQFGGDLYPMMGIVAVFMIGQALEGMVLTPLLVGDRIGLHPV 304

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              F ++ G    G  G+ +   + A+I V+ +      K+++
Sbjct: 305 AVIFAILAGGELFGFTGILLALPVAAVIMVLVRHMHDVYKDSE 347


>gi|260587474|ref|ZP_05853387.1| sporulation integral membrane protein YtvI [Blautia hansenii DSM
           20583]
 gi|331084128|ref|ZP_08333234.1| sporulation integral membrane protein YtvI [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|260541739|gb|EEX22308.1| sporulation integral membrane protein YtvI [Blautia hansenii DSM
           20583]
 gi|330401983|gb|EGG81556.1| sporulation integral membrane protein YtvI [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 385

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/354 (16%), Positives = 133/354 (37%), Gaps = 24/354 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKG--------FFAPVLSALIIGFTSWPIYSSFISKKEE 57
           +N +  ++ +++FI  +    L G        FF P +   +I   + P+      + + 
Sbjct: 1   MNWKKHIKNLLVFIFTLLAVVLGGLIAFKFIRFFMPFVIGWLIALIANPLVRMLERRMKV 60

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV--------VLANQHGIPVPRW 109
           +    +++  ++V+   I  + F+    + E   L+ +             + G  +   
Sbjct: 61  ARKHTSMLLIIAVLAAIIGGIYFIGMKTLQEASSLIEQAPEIYSSFREDFQEAGENLSMI 120

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
           + ++P G+       K ++  Q                     AS F        ++IIF
Sbjct: 121 IEELPDGV------QKGIADFQDSLGNMIGTAVGKISQITVDQASNFAKNLPSIIIAIIF 174

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
            I++ +FF  D   I +        L    WK + R    +    F     I     ++L
Sbjct: 175 TILSSYFFIADRDKILEFGREHTPQLIQEKWKILERCFRSIFGGYFKAQFKIMGVVFVIL 234

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
              + +  V   + +  + + + M+P  G   +    +++ ++ G++  A  L +   + 
Sbjct: 235 CIGFLILKVNFAIVVAFLVSFLDMLPFFGTGTALIPWALFKILSGDMQYAVGLIILY-LT 293

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
             ++ + + P +VG  I +  L T   +  G R  G+LG+ +   + A+I   +
Sbjct: 294 TQLIRRIIEPKVVGDSIGIDPLWTLICMYTGYRFAGVLGMILAVPVGAIIVNFY 347


>gi|196249921|ref|ZP_03148616.1| sporulation integral membrane protein YtvI [Geobacillus sp.
           G11MC16]
 gi|196210435|gb|EDY05199.1| sporulation integral membrane protein YtvI [Geobacillus sp.
           G11MC16]
          Length = 372

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/352 (15%), Positives = 120/352 (34%), Gaps = 16/352 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFA----PVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
             +R++I+  ++V       + +    P + A  I     P+ +    K +        +
Sbjct: 8   RFLRFLIVIAVVVLGLMAAYYVSTVTYPFIIAFFIALLINPLVNFLERKTKMPRWLAVSV 67

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD---IPGGMWASEL 122
             + +       ++ L    +   + L   V    Q  I      +    IP     + L
Sbjct: 68  TLIVLFAAVAGIVILLIAEIVSGTQYLADVVPEKFQALIAYMESFAANQLIPLYQDLAVL 127

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL-------SIIFMIIALF 175
           +     + Q   + +   + T     +  F  R                   IF ++A F
Sbjct: 128 FKSLNDNQQDTIMQNVQAVGTQIATTVGEFIQRVLQNIPQLLAWLPNAATVFIFSLLATF 187

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F  +D   + + +            K +   + + +         +     +++     +
Sbjct: 188 FISKDWHRLMRMIQQWLPAKARTSGKTVFLDLKRALFGFIKAQATLISITTVIVLIGLLI 247

Query: 236 AGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
             V   + + +I   + ++P  G  I F    IY  + G+I  A  L +   I + +  +
Sbjct: 248 LRVDYAITIALIIGFVDILPYLGTGIVFVPWIIYAAVSGDIPFAIGLGVLY-IVVLVQRQ 306

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            + P ++   I L  L T   L  G + +G LGL  GPV++ +I  +   ++
Sbjct: 307 IMEPKVLSSSIGLDPLATLIALFVGFKLLGFLGLIAGPVILVIIRTLHSANV 358


>gi|317013986|gb|ADU81422.1| hypothetical protein HPGAM_02910 [Helicobacter pylori Gambia94/24]
          Length = 349

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 65/363 (17%), Positives = 140/363 (38%), Gaps = 25/363 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  Q     + +      LY  + F    L A ++    + +      +   S+   + +
Sbjct: 1   MKAQYFFWILFLIGFYWMLYLYQDFLMDALIAGLLCVGLFQVKVFLNKRF--SNVISSFL 58

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +  + IVPL F+ Y G   + E+        +    + +WL         +E  + 
Sbjct: 59  CVLVLASVVIVPLYFIVYKGSNVIFEI------NFEKLSALIKWLKG-----TITENLSH 107

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +    +    E F   +   ++ + +S  G   L      +F++  LFFF+  G    
Sbjct: 108 FPAIHDGVSKFLENFSAASITGYLLKVSSYIGKYSLKLVTDALFILGLLFFFFYYGEKFY 167

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +   L     KKI   V  ++R   L   I  I EG+  G+     G      LG
Sbjct: 168 RYFLGVLP-LEMNQSKKIFEEVAGILRIVLLTSLITVILEGVAFGAMIIWFGHDGWS-LG 225

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLV-- 301
           ++  + +++P  G  + +  ++IY L  G++  A  + L+  + +  ++D  ++P L+  
Sbjct: 226 ILYGLASLVPAVGGALIWIPIAIYELYHGHVNEAIFIVLYSILLIGVLIDSVIKPILIVF 285

Query: 302 ------GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                    +K+  +  FF ++ G+   G  G+ +GP + A    + +       + ++K
Sbjct: 286 IKKRIFKTTLKINEILIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQKEQK 345

Query: 356 ISS 358
              
Sbjct: 346 TCE 348


>gi|256833114|ref|YP_003161841.1| hypothetical protein Jden_1895 [Jonesia denitrificans DSM 20603]
 gi|256686645|gb|ACV09538.1| protein of unknown function UPF0118 [Jonesia denitrificans DSM
           20603]
          Length = 483

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/306 (16%), Positives = 92/306 (30%), Gaps = 19/306 (6%)

Query: 40  IGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA 99
                 P+     +      +  AV + ++++      +          + EL  + V  
Sbjct: 85  FTVLLQPMDRFLHTTLRFPRSLSAVTSVLALIAALATLITVAGQQIASGITELSDRAVQG 144

Query: 100 NQHGIPVPRWLSDIPGGMWASE---LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
               I    W    P  +  S+    W   L   Q            N    +   A   
Sbjct: 145 VNELI---SWAQRDPLNLDLSQIDAYWNDLLDAAQ------------NQSGALVSGALSV 189

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
                      +  I    FF  DG  I   +  L          +  R     + +   
Sbjct: 190 TSTIGHVIAGALIAIFCTIFFLIDGRKIWTWIVGLLPRHVRERTHQAGRRGIVTLSAYVR 249

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNI 275
              ++A  + + +G    L G+P  V L  +  + A IP  GA I+     +  L+    
Sbjct: 250 TQILVAFIDSIGIGVGAALIGLPLVVPLAALVFVGAFIPFVGAIITGAVAVLVALVVKGW 309

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             A  +     +   I    L+PFL+G  + +  +     +  G    G++G      ++
Sbjct: 310 VWALVMLGIVLLVQQIEGNVLQPFLMGRAVAIHPVAVLLTVSAGTVLAGIVGAIFAVPIV 369

Query: 336 ALIAVI 341
           A+   I
Sbjct: 370 AVANTI 375


>gi|114566423|ref|YP_753577.1| hypothetical protein Swol_0888 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337358|gb|ABI68206.1| protein of unknown function UPF0118 [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 370

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/351 (15%), Positives = 134/351 (38%), Gaps = 17/351 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGF---------------FAPVLSALIIGFTSWPIYSSFIS 53
           + + +  I+ ++L+++Y L  +               F P + A+++     P+ + F  
Sbjct: 10  KTLSKTTIVVMVLLAIYLLFHYVFPLAGKILARLPILFLPFIFAILLAVIIEPVVNFFEK 69

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
           K   +  +  VI+ + V+  F   L  L    + +M  L  +V+  +             
Sbjct: 70  KTHLNRNWSVVISLLLVVGGFFTLLSLLVSRIINDMSRLYPQVLHYSDQITASFMAAISN 129

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
              ++     +    +     + +   L ++ ++       R   +     + ++   +A
Sbjct: 130 LNLLYLGLNLSPQAQNALQQNMENGIKLVSSLMEKSINGLIRSLAMLPGILVFLMIATVA 189

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
            FF  +D   I   +         +  +++   + +V+        I+     +V   A 
Sbjct: 190 TFFIIKDRALIRSFVMQWIPGNVRSKTREVFAELFRVLVGFVKAYGILISVTTIVTMVAL 249

Query: 234 WLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            + G    + +G+I  ++ ++P  G    F    I+  + G++     L +   + + +V
Sbjct: 250 RVLGFDYVITIGIIVGLLDILPVLGPGAFFVPWIIWHFVAGDLHLGISLLIVY-LLISVV 308

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            + L P +VG  I L  L T   L  G++  G  G+ +GPVL+ +    ++
Sbjct: 309 RQFLEPKIVGDNIGLHPLATLISLYAGLQLGGFTGMIMGPVLLVIFIASYR 359


>gi|227821507|ref|YP_002825477.1| putative permease protein [Sinorhizobium fredii NGR234]
 gi|227340506|gb|ACP24724.1| putative permease protein [Sinorhizobium fredii NGR234]
          Length = 388

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 106/326 (32%), Gaps = 10/326 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  Q     +++   +  L        P L+ + + +   P+      +   S     + 
Sbjct: 10  LQRQIFFWLLVLAAFIAFLMVFSSILLPFLAGMALAYFLDPVADRL-QRLGLSRLMATIA 68

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWT 124
             V+ + LF + L+ +      +  + + K+     +    V           W      
Sbjct: 69  ILVTFIVLFALSLIIVIPLIFTQAADFIQKMPGYVARLQAFVADTTQSTLVPDWLEAQMA 128

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
               +   L     TFL T     + +     GM  LD     I   +  F+   D   +
Sbjct: 129 AIKQNSAKLLEQGATFLGT-----LFQQLWNSGMALLDILSLFIITPVVAFYLLLDWDHM 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            Q++DS          ++I+R +   I     G   + +  GL       L G+   + +
Sbjct: 184 VQKVDSWVPRDHVDVVRQIARDMNTTIAGFVRGQGSLCVILGLYYAIGLSLVGLNFGLLI 243

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLV 301
           G    +++ IP    +    +++ + +     +      +        F+    L+P LV
Sbjct: 244 GFFAGMISFIPYVGSLVGLVLAVGVAVVQFWPDYIWILLVLAVFFTGQFLEGNILQPKLV 303

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLG 327
           G  + L  +   F L+      G +G
Sbjct: 304 GKSVGLHPVWLMFALLAFGALFGFVG 329


>gi|194015510|ref|ZP_03054126.1| membrane protein YueF [Bacillus pumilus ATCC 7061]
 gi|194012914|gb|EDW22480.1| membrane protein YueF [Bacillus pumilus ATCC 7061]
          Length = 367

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 59/312 (18%), Positives = 119/312 (38%), Gaps = 8/312 (2%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM-LEM 89
           F P+L A I+ F   PI      K   S      +A + +  LFI  + F+      + +
Sbjct: 41  FVPILLAGILFFIFNPIVRFLSKKIPRS------LAILIIYLLFIGLITFIVNAAGPVIV 94

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
            +L   V     +   + ++++D       + + ++        +    + LK    +  
Sbjct: 95  TQLGGLVKSFPGYVTDMQKFINDFSHSKTFTWMMSQDYVSVSKFEQTVVSTLKALPENIA 154

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
              ++ FG +  +  L++I +   LF+  +DG     +L       +     KI + +  
Sbjct: 155 SSMSAVFG-VIANIALAVITVPFILFYMLKDGHKFPDKLVQFLPMPYRKEGLKIFKELND 213

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            + +   G  I+ +  G+     Y L GV   + LG+I A+  +IP   P    A ++ +
Sbjct: 214 TLAAYIQGQIIVCLFVGVACFIGYLLIGVKYALILGIIIAVTNVIPYLGPYLGAAPAVLI 273

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
               +   A    +   +   I    + P ++G  +    L     L+G     G+LG+ 
Sbjct: 274 AFLDSPGKAVVTVIVILVVQQIDGNVISPLIIGKRLNTHPLTIILLLIGAGSFGGILGMI 333

Query: 330 IGPVLMALIAVI 341
               + AL+  I
Sbjct: 334 FAVPVYALLKAI 345


>gi|116332976|ref|YP_794503.1| permease [Lactobacillus brevis ATCC 367]
 gi|116098323|gb|ABJ63472.1| Predicted permease [Lactobacillus brevis ATCC 367]
          Length = 390

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 127/327 (38%), Gaps = 17/327 (5%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
              V+ A I+ +   P+      +          IA ++   + ++  L L  +   +  
Sbjct: 58  MPAVVVAGILFYVLDPLVHLMERRLHLRQGLAIAIAMIATAAIIVIIFLNLIPFLTKQTT 117

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH--PQSLKILSETFLKTNGIDF 148
            ++S           +P++ +D+   +         LS+     +     T+    G++ 
Sbjct: 118 GIIS----------ALPQFANDMLHNLNHLNQQHHWLSNKNLADINERVSTYFSKRGLNL 167

Query: 149 IPRFASRFGMIFL---DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +    S  G +     D+ ++II   + LFF  +DG      +  +    + + +  +  
Sbjct: 168 LTGTLSSLGNVVTTVSDWIITIITAPLVLFFMLKDGTRFPHYISQVVPTAYRSRFVVMLD 227

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTA 264
            +   + S   G   +A+   ++  + Y + G+   + +G++   + +IP  G+ I+   
Sbjct: 228 QMNVKVSSYVRGQLTVALCVLIIFTTGYSIIGLRYALLIGLLAGPLNLIPYFGSAIALVP 287

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             I  ++  +      + +   IE  +  + L P ++G  + +  +   F L+ G +  G
Sbjct: 288 ALIMGVVT-SPSMLLGVVIVYLIEWVLETQVLSPLIMGNSLAMHPITIVFVLLAGGKMFG 346

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+G+  G    A++ V+   +    +E
Sbjct: 347 LVGVIFGVPGFAVLKVLATTAFQWYQE 373


>gi|15611581|ref|NP_223232.1| hypothetical protein jhp0514 [Helicobacter pylori J99]
 gi|8928476|sp|Q9ZLR4|Y567_HELPJ RecName: Full=UPF0118 membrane protein jhp_0514
 gi|4155053|gb|AAD06090.1| putative Inner membrane protein [Helicobacter pylori J99]
          Length = 349

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 65/363 (17%), Positives = 140/363 (38%), Gaps = 25/363 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  Q     + +      LY  + F    L A ++    + +      +   S+   + +
Sbjct: 1   MKAQYFFWILFLIGFYWMLYLYQDFLMDALIAGLLCVGLFQVKVFLNKRF--SNVISSFL 58

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +  + IVPL F+ Y G   + E+        +    + +WL         +E  + 
Sbjct: 59  CVLVLASVVIVPLYFIVYKGSNVIFEI------NFEKLSALIKWLKG-----TITENLSH 107

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +    +    E F   +   ++ + +S  G   L      +F++  LFFF+  G    
Sbjct: 108 FPAIHDGVSKFLENFSAASITGYLLKVSSYIGKYSLKLVTDALFILGLLFFFFYYGEKFY 167

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +   L     KKI   V  ++R   L   I  I EG+  G+     G      LG
Sbjct: 168 RYFLGVLP-LEMNQSKKIFEEVAGILRIVLLTSLITVILEGVAFGTMIIWFGHDGWS-LG 225

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLV-- 301
           ++  + +++P  G  + +  ++IY L  G++  A  + L+  + +  ++D  ++P L+  
Sbjct: 226 ILYGLASLVPAVGGALIWIPIAIYELYHGHVNEAIFIVLYSILLIGVLIDSVIKPILIVF 285

Query: 302 ------GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                    +K+  +  FF ++ G+   G  G+ +GP + A    + +       + ++K
Sbjct: 286 IKKRIFKTTLKINEILIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQKEQK 345

Query: 356 ISS 358
              
Sbjct: 346 TCE 348


>gi|297202106|ref|ZP_06919503.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
 gi|197713541|gb|EDY57575.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
          Length = 459

 Score = 91.4 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/317 (11%), Positives = 103/317 (32%), Gaps = 18/317 (5%)

Query: 17  MFIILVSLYFLKGFFAPV---LSALIIGFTSWPIYSSFISKKEES---STFLAVIATVSV 70
           + ++  +++ L    + V   + A ++      +    +++             +  +  
Sbjct: 95  LLVLAGTVWVLMRVISSVQLVVFAFVVALLITALLQPTVARLMRHGVPRGPATALTAILG 154

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             +  +   F+ +  M  + +L  ++         +  WL   P  +   ++     +  
Sbjct: 155 FVIIGLMGWFVTWQVMENIDDLSDQIQSGID---DLRNWLLKSPFHVTDKQINQIAKNLR 211

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           +++   ++                    + ++    I+    +  F   DG  I      
Sbjct: 212 EAVGANTDQITSAGLEGV---------QVVVEALTGILLTFFSTLFLLYDGRRIWNWTLK 262

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L                   + +   G  ++A+ + + +G   +   VP  V L V   +
Sbjct: 263 LVPAAARPAVAGAGPRAWHTLTAYVRGTVLVALIDAVFIGIGIYFLDVPMAVPLAVFIFL 322

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            + IP    ++  A+++  L+   +F A            I    L+PF++G  +++  L
Sbjct: 323 FSFIPLVGAVASGALAVLALVTQGVFTAVMTLAVVLAVQQIEGHILQPFILGRAVRVHPL 382

Query: 311 PTFFGLVGGVRTMGLLG 327
                +  G    G+ G
Sbjct: 383 AVVLTVATGGMVAGIGG 399


>gi|315221946|ref|ZP_07863857.1| conserved hypothetical protein [Streptococcus anginosus F0211]
 gi|315188912|gb|EFU22616.1| conserved hypothetical protein [Streptococcus anginosus F0211]
          Length = 374

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/316 (15%), Positives = 111/316 (35%), Gaps = 6/316 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L     P L A  + + + P+      + +    F  +I  V +  +  + +++L    
Sbjct: 37  VLNTVLIPFLIAGFLYYVTNPLVKFLEKELKIKRIFGILITLVLLFGIIALGIIYLLPIL 96

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  L+S    +      +  W++ +      S     ++        LS   +  N 
Sbjct: 97  ITQLTSLIS---SSQNVYGELQNWINQL---SQHSLFKNLNIQSIIKQLNLSYVDILQNI 150

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           ++ +           ++  L +I   I L +F  DG  +   L+            K+  
Sbjct: 151 LNSVTNSLGSVVSAVVNTFLILIMTPIFLVYFLIDGDKLLPMLERTVLKRDKLNITKLLT 210

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   I     G++I A   G +    Y + G+   +   + + I  +IP   P      
Sbjct: 211 NLNATIARYISGISIDAFIIGTLAFIGYSVIGLKYALIFAIFSMIANLIPYVGPSIGLIP 270

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            I   +  +        ++  I   I    L P +VGG +K+  +     L+      G+
Sbjct: 271 MIITYLIADPKKMVIAVIYMLIVQQIDGNILYPRIVGGVMKVHPITIMVLLLLSSNIYGI 330

Query: 326 LGLFIGPVLMALIAVI 341
           +G+ +   + +++  I
Sbjct: 331 VGMIVAIPIYSILKEI 346


>gi|296876177|ref|ZP_06900231.1| membrane protein [Streptococcus parasanguinis ATCC 15912]
 gi|296432888|gb|EFH18681.1| membrane protein [Streptococcus parasanguinis ATCC 15912]
          Length = 391

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/335 (14%), Positives = 112/335 (33%), Gaps = 5/335 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI +    F      PV+ + ++ +   PI   F+ +K     F   +    +  L I
Sbjct: 42  ITFIFIPIFEFAGAVMLPVIISGLLYYLLNPIVD-FLERKGLKRIFAISLVFFLIAVLLI 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L  +      ++      +    +          D            +      +   
Sbjct: 101 WGLAVVIPAVQRQVVSFFHNLPTYLEKANATIDDFLDNRVSSDIKPQLDEITKELSANIT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              + +    ++++         +     +++I M   +F+  RDG ++   +       
Sbjct: 161 SWASSISGRAVNWVSNLIGVASQV----IVALIIMPFIVFYLLRDGKNLKGHIVRFLPTK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                +++   V   + +   G   +AI   ++    + + G+   V LG+   I+ +IP
Sbjct: 217 IRKSAEQVLSDVNTQLSNYVRGQITVAIVVAIMFIVFFKIIGLRYAVTLGISAGILNLIP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +  A+E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLVAGPEMFIKVLIVFAVEQTIEGRFVSPLVLGSQLNIHPITILFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+      G+ G+F+G  + A   V+        K
Sbjct: 337 LLTSGSMFGIWGVFLGIPVYASAKVVIGAIFEWYK 371


>gi|227891763|ref|ZP_04009568.1| permease [Lactobacillus salivarius ATCC 11741]
 gi|227866422|gb|EEJ73843.1| permease [Lactobacillus salivarius ATCC 11741]
          Length = 376

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/337 (16%), Positives = 118/337 (35%), Gaps = 6/337 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSF----ISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
           F    F PV+ +  + +   P+        I K + + T    I  ++V  +  + + FL
Sbjct: 37  FFSTLFIPVIISGFLYYMLLPLVKLLMKVKIGKFKINRTGAVAIVFIAVFAIIAMSIAFL 96

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               +++++ L++K             +   +     +S L    L    +    S + +
Sbjct: 97  LPKIIVQVENLITKSPTYVSQL--EKNFQHFLKYDSRSSWLKDIDLQSYLNRFEGSGSEM 154

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
               +  +            +  ++++ +   LF+  +DG+ +   +         A  +
Sbjct: 155 IAKFMKSLTNSLGSIISAITNITVTVLTVPFMLFYMLKDGYKLMPSILKFVPRKRTAQVE 214

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            + + +   +     G  I  I  G+     Y LAGVP  +  G+      +IP   P  
Sbjct: 215 AMLQDMSNTLSKYISGQAIECIFVGICTAIGYGLAGVPYALLTGIFAGATNIIPYIGPYI 274

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               ++ L +  +   A    +   I   I    + P ++G  + +  L     L+   +
Sbjct: 275 GLVPALILSLTDSFNTAVMAIIVCIIVQQIDGNLIYPNVIGKSVDIHPLTIILLLLVAGK 334

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             GLLG+ +     A+I VI K     I    E    
Sbjct: 335 IAGLLGIILCIPFYAIIKVIVKHVREVIILENESSDE 371


>gi|289168140|ref|YP_003446409.1| hypothetical protein smi_1301 [Streptococcus mitis B6]
 gi|288907707|emb|CBJ22544.1| conserved hypothetical protein [Streptococcus mitis B6]
          Length = 388

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 114/335 (34%), Gaps = 5/335 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    L FL     PV+ + ++ +   PI       K         I  V +    I
Sbjct: 42  ISFLFSPVLDFLAVVMLPVILSGLLYYLLNPIVDWMEKHKINR-VIAISIVFVIIALFII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      V +  +    V   L              + L++  S   
Sbjct: 101 WGLAVAIPNLQRQVLTFARNVPIYLEDADRVINDLVTKRLPDDFRPQLEQVLTNFSSQAT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +  + + +  ++++  F S    +     +++I +   LF+  RDG  +   L       
Sbjct: 161 VWASKVSSQAVNWVSAFISGASQV----IVALIIVPFMLFYLLRDGKGLRHYLTQFMPTK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   V + + +   G   +AI   ++    + + G+   V LGV   I+ ++P
Sbjct: 217 LKEPVGQVLSDVNQQLSNYVRGQVTVAIIVAVMFMIFFKIIGLRYAVTLGVTAGILNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPVMLLKVVIVFIVEQTIEGRFVSPLILGSQLNIHPINVLFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+      G+ G+ +G  + A   V+        K
Sbjct: 337 LLTSGSMFGIWGVLLGIPVYASAKVVISAIFEWYK 371


>gi|22297616|ref|NP_680863.1| hypothetical protein tll0072 [Thermosynechococcus elongatus BP-1]
 gi|22293793|dbj|BAC07625.1| tll0072 [Thermosynechococcus elongatus BP-1]
          Length = 395

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 139/352 (39%), Gaps = 21/352 (5%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK---EESSTFLAVIATVSVMC 72
           I+ +   +   +  FF P+++ L++      + +  +             A+   +  + 
Sbjct: 33  ILTLNFWAFATVLKFFGPLVAVLVLASLFAFLLNYPVRWMEEQGNPRGPSAIFVFLLALV 92

Query: 73  LFIVPLLFLFYYGMLEMKELVS----KVVLANQHGIPVPRWLSDI--PGGMWASELWTKH 126
           L  +  L +      + ++L++        + +  +   +W+  +  P  +    L  + 
Sbjct: 93  LIAIIALVVVPNLFNQAQQLIARLPEWFNSSQRRLLEFGQWVDSLNLPVTVDVDALANQL 152

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           L   + LK   ++  +      +   +S       D  +++I  ++  F+  + G  +  
Sbjct: 153 L---EKLKDQLQSLAREALNLILGTLSSAV-----DVLINLILTVVLTFYLLQHGDELWN 204

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L S   +        +S  + +   S F+G  ++ +  G+ L + +    VP  +  GV
Sbjct: 205 GLLSWLPNTVRP---TVSETIRRSFESYFIGQLVLGLCMGIGLTTIFIFLKVPYGLLFGV 261

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           I  +MA++P G  +   ++S+ + ++ +++ +  +  +  +    ++  + P ++G    
Sbjct: 262 IIGVMALVPFGGTVGIISISLLVALQ-DVWLSLKVAGFAFLYQQFLENVVAPRIIGSFTG 320

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L  +  F  ++ G R  GL+G+ I   +  +I          +   +E  ++
Sbjct: 321 LNPVWVFLAILTGARASGLVGVLIAVPIAVVIKTFLVSVRSRLNSEEEADAT 372


>gi|255319430|ref|ZP_05360645.1| permease [Acinetobacter radioresistens SK82]
 gi|262379393|ref|ZP_06072549.1| sporulation integral membrane protein YtvI [Acinetobacter
           radioresistens SH164]
 gi|255303498|gb|EET82700.1| permease [Acinetobacter radioresistens SK82]
 gi|262298850|gb|EEY86763.1| sporulation integral membrane protein YtvI [Acinetobacter
           radioresistens SH164]
          Length = 395

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/346 (14%), Positives = 124/346 (35%), Gaps = 11/346 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  + + R  I+  I + L+ L   K    P L A +I +   P+ +    K        
Sbjct: 1   MVDRTLRRIFILAAIALLLWVLYLLKPVVIPFLMAFLIAYLFSPLVAWL-HKYHLPRWLS 59

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ-HGIPVPRWLSDIPGGMWASE 121
             I  + +  L ++ + ++      ++      +             W+S+         
Sbjct: 60  ISIVFIGIGILLVLAIWYVVPLVWQQLVYARDSIPAGIHWLNATFLPWVSNTFNVEQMEI 119

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              +  +    +    +T    + I  +    ++ G+ F+    +I+ + I  F+F  D 
Sbjct: 120 DTEQIST---VVMDYIQTNYSADSIQTMLLRLAQSGLNFIQIGGTIVLIPIIAFYFLLDW 176

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  L    +     ++      V+ +   G  ++ I  G+V      L G+   
Sbjct: 177 DRMLNSMRRLIPRPYEKNTIQVVHECHNVLGAFVKGQFLVMILLGIVYAVGLQLIGLEVG 236

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRP 298
           + +G++  + ++IP          ++   +     +      + +   +   +    L+P
Sbjct: 237 LIIGMVAGLASIIPYLGFAVGIIAAVIATLFQFGLDWTQLILVGVVFMVGQAVEGYILQP 296

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           FL+G  I L  +   F ++ G +  G  G+ I   + A+I V+ + 
Sbjct: 297 FLLGDKIGLSPVAVVFAVLAGAQLAGFFGMLIALPMAAVIVVLLRH 342


>gi|82699601|ref|YP_414175.1| ATP/GTP-binding protein [Brucella melitensis biovar Abortus 2308]
 gi|189023923|ref|YP_001934691.1| ATP/GTP-binding protein [Brucella abortus S19]
 gi|260545574|ref|ZP_05821315.1| ATP/GTP-binding protein [Brucella abortus NCTC 8038]
 gi|260754474|ref|ZP_05866822.1| permease [Brucella abortus bv. 6 str. 870]
 gi|260761520|ref|ZP_05873863.1| permease [Brucella abortus bv. 2 str. 86/8/59]
 gi|82615702|emb|CAJ10689.1| ATP/GTP-binding site motif A (P-loop):Protein of unknown function
           UPF0118 [Brucella melitensis biovar Abortus 2308]
 gi|189019495|gb|ACD72217.1| ATP/GTP-binding protein [Brucella abortus S19]
 gi|260096981|gb|EEW80856.1| ATP/GTP-binding protein [Brucella abortus NCTC 8038]
 gi|260671952|gb|EEX58773.1| permease [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674582|gb|EEX61403.1| permease [Brucella abortus bv. 6 str. 870]
          Length = 627

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/328 (14%), Positives = 114/328 (34%), Gaps = 24/328 (7%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G M + ++F+++ S   L  F A +     + +   P+      K   S    +++  + 
Sbjct: 20  GAMAFFVLFLVVFSS-VLLPFVAGMA----LAYFLDPVADRLE-KVGLSRLAASIVILLI 73

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI--PGGMWASELWTKHL 127
            + + I+ L+ +      ++ + +S +          P +++ +        SE   K++
Sbjct: 74  FLMILIIGLMIVVPILATQLADFISNL----------PGYITQLQSLLANRDSEWLKKYI 123

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRDGFSI 184
               ++   + + L   G  F+          G   +D     +   +  F+   D   +
Sbjct: 124 GIDSTVIQQNLSSLLQQGAGFLSTLLQSLWNSGKSLIDIAGLFVVTPVVAFYMLLDWDRM 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              +DS          ++I+R +   +     G   + +  G        L G+   + +
Sbjct: 184 VNSIDSWVPRKQLHTVRRIAREMNAAVAGFIRGQGTLCLILGTYYAIGLTLTGLNFGLLI 243

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLV 301
           G    +++ IP        A++I + +     +      +     +  FI    L+P LV
Sbjct: 244 GFFAGLISFIPYIGSFVGLALAIGVALVQFWPDWIMVCTVAAVFFLGQFIEGNILQPKLV 303

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           G  + L  +   F L       G  G+ 
Sbjct: 304 GSSVGLHPVWLMFALFAFGSLFGFTGML 331


>gi|42523616|ref|NP_968996.1| hypothetical protein Bd2150 [Bdellovibrio bacteriovorus HD100]
 gi|39575822|emb|CAE79989.1| putative membrane protein [Bdellovibrio bacteriovorus HD100]
          Length = 345

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 65/321 (20%), Positives = 113/321 (35%), Gaps = 21/321 (6%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML- 87
            F  P+  A +             +K        ++I  +  MCLF++PL    Y  ++ 
Sbjct: 30  PFLMPLTLAGVFALGLNDWIEKLSAKGRLGRKSWSLIFMLLGMCLFLIPLSLAIYRIVVY 89

Query: 88  -------EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
                  E  +++S+      + I + + LSD  G   A              + + E  
Sbjct: 90  ASQPKNIETDQILSQAHNLKNYAINMLQKLSDFTGTDLA-----------GPAREVMENV 138

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           L   G   I       G + +   L I   +I++         I +        L     
Sbjct: 139 LHKIGSGAIEYSTQFLGQLPV-ILLMIFVFLISMTVMLMKAPGIKEFTLRYSP-LKADTT 196

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           +K+  I  K    T     +I + +  ++G+   + G      +  +T  ++ IP     
Sbjct: 197 EKLIVITKKSCWLTLFSTLVIGLIQASLIGAGSLIFGEGDFWLVLTVTFFVSFIPVIGAA 256

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
               +   L   G+   A       A     +D  L+PF +GG   +  +  F  +VG +
Sbjct: 257 PVGYLLCVLAFIGDRTGAAIGLFIVATIAGSIDNILKPFFIGGDQDISPVIGFTCVVGAI 316

Query: 321 RTMGLLGLFIGPVLMALIAVI 341
             MGL GL IGPV+M L   I
Sbjct: 317 IMMGLPGLLIGPVVMNLFVGI 337


>gi|303239293|ref|ZP_07325821.1| sporulation integral membrane protein YtvI [Acetivibrio
           cellulolyticus CD2]
 gi|302593079|gb|EFL62799.1| sporulation integral membrane protein YtvI [Acetivibrio
           cellulolyticus CD2]
          Length = 360

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/315 (17%), Positives = 111/315 (35%), Gaps = 4/315 (1%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           + AP L A  +     P+    I K   +     V + + V+ +    L  L      E 
Sbjct: 31  YIAPFLIAFALSSLVEPLIKFLIKKVRLNRKIATVFSLLLVLVIVGGLLALLISRIYQEA 90

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             L   +   +       R   +        +L  +   + + +     + L   G  F 
Sbjct: 91  LSLYDMMPQYSIEIYNNIRNYIN-KASDIYFKLPQEVTKNAEGMIADLTSTLSGIGSRF- 148

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
            +      +      + +I  I++ +F   D   I   +       +      I   +  
Sbjct: 149 AKGVFNTAISIPQAIIFVIVTILSTYFMAADREKIYNYIKFNVPESWVDNVVSIKNDMFA 208

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIY 268
            +        I+     + L   + + GV  ++ LG++ +I+  +P  G        SIY
Sbjct: 209 ALFGYIRAQLILMSITFVELSIGFGIIGVRQNLLLGLLVSIIDALPILGTGGVLIPWSIY 268

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
             I G+I     L +   + L +V + + P ++G  I L  L T   +  G+R    +G+
Sbjct: 269 NFITGDIRMGISLIILYGVVL-VVRQMIEPKVLGQQIGLHPLVTLLSMYVGLRVFSFIGM 327

Query: 329 FIGPVLMALIAVIWK 343
            IGP+ + L+  I +
Sbjct: 328 IIGPITILLLKNILQ 342


>gi|260906829|ref|ZP_05915151.1| putative permease [Brevibacterium linens BL2]
          Length = 452

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 60/343 (17%), Positives = 121/343 (35%), Gaps = 13/343 (3%)

Query: 14  WMIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +++  + V+L+ L        PVL AL++     P  +  + K        A+IA +  
Sbjct: 74  LVVLAAVGVALWLLAKVSSVVLPVLIALLLTALLAPFTNWMVRK-GLPRVAAALIAFIGF 132

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +       +       M +LV +V+        +  WL+  P G+ AS        + 
Sbjct: 133 IVVVSGLFTLVGQQIYSGMPDLVDQVITGFSG---ISNWLASRPFGLDAS----TISGYI 185

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +    +  F + N    +   A +       +       + A FFF  DG  I + +  
Sbjct: 186 NNSLDAANNFFQNNSSQLLGG-AVQATSSVGTFLTGAAVCLFATFFFLYDGEKIFRWVMR 244

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L            S      +        ++A  + + +G      G+P  + + V+  +
Sbjct: 245 LLPLPAQPIATGASERGWTTLVQYVRVQVLVAGVDAIGIGIGAAFLGIPLVIPMTVLVFL 304

Query: 251 MAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            + +P  GA  S     +  L+     +A  +         I  + L+PFL+G  + +  
Sbjct: 305 ASFVPVVGAIASGVVAVLVALVSNGPVSALIMLGVVLAVQQIESQILQPFLMGKAVSVHP 364

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L     +  G    G++G      L+A++  +    + A   N
Sbjct: 365 LAVILAVTAGGFLFGIVGALFAVPLVAVLNTVVTYIVRAKNPN 407


>gi|11499389|ref|NP_070628.1| hypothetical protein AF1800 [Archaeoglobus fulgidus DSM 4304]
 gi|8928485|sp|O28474|Y1800_ARCFU RecName: Full=UPF0118 membrane protein AF_1800
 gi|2648744|gb|AAB89447.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 340

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/327 (17%), Positives = 118/327 (36%), Gaps = 19/327 (5%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + YF       ++  ++  + + P+           ++ +A         + I+P+  L 
Sbjct: 20  TFYFFTPLLDGIVMGVVFAYVAKPVKRKIEHVGRIKASVIAT-------AIVILPISVLM 72

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
           +YG+++    +++ +    H   +   + +I   M   E         +       + + 
Sbjct: 73  FYGLIQG---LNQAIYLITHYKVIESGILNILSKMGIEE--------GEEYVKWITSNVF 121

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           +     I   A           L+    I+  F+   D  +  ++  S+        +++
Sbjct: 122 SILQSSIQPSAVEITKKATLLILNFFISIVVCFYALADMENFVRRTTSVVPEDRRDEFRR 181

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PIS 261
               +     S + G  ++AI  GLV    +    VP    L  +  + A+IP  A  + 
Sbjct: 182 FVEEIDVTFESLWFGNFVVAILIGLVSLPFFLYFNVPFAPLLSGLMFLAALIPIFAEWMI 241

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
              VS+YLL+       + L +       + +  LRP+ VG   K+  L      +GG  
Sbjct: 242 ILPVSLYLLLVDVGRGLSFLLIGVVFLYVLPELILRPYFVGYTSKIHPLVLMLAFIGGGL 301

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMA 348
             G+ G FI P+++ L   I+      
Sbjct: 302 VGGISGFFIAPMIVGLATAIYNYYTKE 328


>gi|157693145|ref|YP_001487607.1| hypothetical protein BPUM_2381 [Bacillus pumilus SAFR-032]
 gi|157681903|gb|ABV63047.1| hypothetical protein BPUM_2381 [Bacillus pumilus SAFR-032]
          Length = 354

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 52/325 (16%), Positives = 118/325 (36%), Gaps = 13/325 (4%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
              LK    P+L A+ I +  +PI     +             TVS++ ++++    +  
Sbjct: 36  FLLLKAVLIPLLIAIFISYLLYPIVERLHAGGLPR--------TVSLLLIYVLFFGGIGL 87

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSD-IPGGMWASELWTKHLSHPQSLKILSETFLK 142
                   ++ ++   ++    +    +  +      +  W   L       I+      
Sbjct: 88  AVYKGAPVMIKQLNELSEQIPVLAETYNGALSHIHHHTSHWPDGLHDRLDRLIVQSETYA 147

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            NG + +         + LDY L    +   +F+  +D  ++ +    L    F      
Sbjct: 148 ANGAERMILSC----KVLLDYALVAALIPFLVFYMVKDMNTMKRAAWYLTPPSFRKRGHA 203

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             + V + + +   G  ++    G       WL  +P  + LG++     +IP   PI  
Sbjct: 204 FVKAVDESLGNYIRGQLLVCSFIGGAATIVLWLFHIPYPLVLGMLIGATNVIPYFGPIIG 263

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++++    ++ +   + +  A+  F+    L P +VG  + +  +     L+ G   
Sbjct: 264 AIPAVFIAFTISVKSVIIVLITVAVLQFLESNVLSPIIVGRSLHMHPVVIMLVLLAGGEL 323

Query: 323 MGLLGLFIGPVLMALIAVIWKESIM 347
            GL+G+ +     A+I VI  + I+
Sbjct: 324 FGLIGMILAVPTAAIIRVIIVQYIL 348


>gi|238760499|ref|ZP_04621635.1| permease perM [Yersinia aldovae ATCC 35236]
 gi|238701296|gb|EEP93877.1| permease perM [Yersinia aldovae ATCC 35236]
          Length = 354

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 57/358 (15%), Positives = 121/358 (33%), Gaps = 18/358 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +PQ I    I+      LYF  G  AP+L+A+++ +   WP     + +   S  
Sbjct: 10  RRRFTDPQVIALLAILLAGFCILYFFSGILAPLLAAIVLAYLLEWPTAR--LQRIGCSRP 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           + A I  V    + ++ +  +      +   L+S           +P+ L+         
Sbjct: 68  WAATIVLVVFGSITLLAVFVVAPTVWQQGNNLIS----------DMPKMLNKFNAFAQTL 117

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGI--DFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                 L     + +++E          + + + +    +  L   + +I + + LFF  
Sbjct: 118 PARYPALVDAGIVDMMAENLRGKLSGMGESVVKISLASLIGLLTLAIYLILVPLMLFFLL 177

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D   +   +  +         +     + + I +   G  +  +  G+     +++ G+
Sbjct: 178 KDKEQMLNAVRRILPRNRGLAGQVWLE-MNQQITNYIRGKVLEMVIVGIATYLVFFIMGM 236

Query: 239 PSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTL 296
              + L V+     +IP  GA I    V +  L +  I      LF    +   +    L
Sbjct: 237 NYALLLAVLVGFSVLIPYIGAVIVTIPVVLVALFQWGIGADFWTLFAAYLVVQALDGNLL 296

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            P L    + L  L     ++      G  G+F    L  L+  +          + +
Sbjct: 297 VPVLFSEAVNLHPLVIILSVIIFGGMWGFWGVFFAIPLATLVKAVIHAWPDEFIPDAD 354


>gi|229815208|ref|ZP_04445544.1| hypothetical protein COLINT_02254 [Collinsella intestinalis DSM
           13280]
 gi|229809218|gb|EEP44984.1| hypothetical protein COLINT_02254 [Collinsella intestinalis DSM
           13280]
          Length = 455

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/309 (12%), Positives = 110/309 (35%), Gaps = 8/309 (2%)

Query: 37  ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV 96
             I  F + PI +    +    +   A+I  + V+  F++    +      +   L+  +
Sbjct: 49  GAISAFMASPIVNFLERRGLPRAGG-ALIGLLVVIVGFVLLFALVIPMVTGQ---LIDLL 104

Query: 97  VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
             A      +  W   +       E     + + +SL   ++  +       +       
Sbjct: 105 RDAPAKLAALSSWAMRMENKFAIVEHLNDVV-NIESLFASAQDMINQALSGLLSAVRDGI 163

Query: 157 G---MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
                       ++    +  F+   D   I++++  +        ++ +  ++ + +  
Sbjct: 164 VPMVNNIASMVFTVFLGFVLAFWLACDYPRINEEICRILPEDKADDYRLMVAVLSRSVGG 223

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
                 I ++ +G +    + + G P  + +G+++ I+ +IP   P     ++  + +  
Sbjct: 224 YLRSTLINSMIQGFLAFVGFMIVGHPYAITMGILSGILNIIPVVGPSISAIIATLIALVY 283

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
           +   A    +   +   I D  + P +    +++  + +   LV G    G +G+ +   
Sbjct: 284 SPIMAIWTMVMAMLSQNITDNVIAPKINQSTMQVHPVLSLTALVVGSTFGGAIGMIVALP 343

Query: 334 LMALIAVIW 342
           L+A+I  ++
Sbjct: 344 LVAVIKSLF 352


>gi|108562971|ref|YP_627287.1| membrane protein [Helicobacter pylori HPAG1]
 gi|107836744|gb|ABF84613.1| membrane protein [Helicobacter pylori HPAG1]
          Length = 349

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 137/363 (37%), Gaps = 25/363 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  Q     + +      +Y  + F    L A ++    + +      +        + +
Sbjct: 1   MKAQYFFWILFLIGFYWMIYLYQDFLMDALIAGLLCVGFFQVKVFLDKRFFN--IVSSFL 58

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +  + IVPL F+ Y     + E+        +    + +WL  I      +E  + 
Sbjct: 59  CVLILASVLIVPLYFIVYKSSNIIFEI------NFEKFSALIKWLKGI-----ITENLSH 107

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +    +    E F   +   ++ + +S  G   L      +F++  LFFF+  G    
Sbjct: 108 FPTIHDGVSKFLENFNAASITGYLLKISSYVGKYSLKLITDALFILGLLFFFFYYGERFY 167

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +   L     KKI   V  ++R   L   I  I EG+  G      G      LG
Sbjct: 168 RYFLGVLP-LGINQSKKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFGHDGWS-LG 225

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLV-- 301
           ++  + +++P  G  + +  V+IY L  GN+  A  + L+  + +  ++D  ++P L+  
Sbjct: 226 ILYGLASLVPAVGGALIWIPVAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVF 285

Query: 302 ------GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                    +K+  +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 286 IKKRIFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345

Query: 356 ISS 358
              
Sbjct: 346 ACE 348


>gi|257069438|ref|YP_003155693.1| putative permease [Brachybacterium faecium DSM 4810]
 gi|256560256|gb|ACU86103.1| predicted permease [Brachybacterium faecium DSM 4810]
          Length = 477

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 55/335 (16%), Positives = 111/335 (33%), Gaps = 21/335 (6%)

Query: 14  WMIMFIILVSLYFLKGFF------APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           W ++ +I  S   L G         PVL A+++     P+            T  + +A 
Sbjct: 32  WRLIVVIAASALILWGLLQITTLVIPVLIAVLLAAMLNPVVKVLTRYTFLGRTAASGVAL 91

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + ++ +              +  ++  K V   Q                WA+  +    
Sbjct: 92  LGLLLVIAGMFTLAGRQLFAQFADIQEKAVTGFQSLTD------------WATSTFQIDA 139

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +      T L+ N    +   A     +  +    I+  + ALFFF   G SI + 
Sbjct: 140 PMVDAAIDEGLTQLQDNSDQLVSG-ALGTAAVLGNVATGIVICLFALFFFLAGGSSIWRW 198

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV-PSHVALGV 246
           +  L          +  R   K + +      ++A  +   +       G+    V + +
Sbjct: 199 VVGLLPPAARVPTHEAFRRGWKALSAYIRTQILVAGVDATGISIGMVALGLGSYAVPIWL 258

Query: 247 ITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +  + + +P    I   A+++ L L+  +   A  +     +        L+PFL+G  +
Sbjct: 259 LVFLFSFVPLVGAIVSGAIAVLLVLVLNSWIGAIIMLAIVLVVQQAESNILQPFLMGKAV 318

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           +L  L    G+  GV    + G      L+A +  
Sbjct: 319 ELHPLAVLLGVAAGVMVANIAGALFAIPLIAFVNA 353


>gi|125973528|ref|YP_001037438.1| hypothetical protein Cthe_1013 [Clostridium thermocellum ATCC
           27405]
 gi|125713753|gb|ABN52245.1| protein of unknown function UPF0118 [Clostridium thermocellum ATCC
           27405]
          Length = 360

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 59/316 (18%), Positives = 113/316 (35%), Gaps = 4/316 (1%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  +FAP L A  I     P+    + K +    F A+++ +  + +  + LL LF    
Sbjct: 28  LAIYFAPFLIAFAISSMIEPVIRFLMKKLKFRRKFAALVSLLLGLSMIAILLLMLFSKLY 87

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E+  L S      +        L  I  G+         ++   S  + S +   ++ +
Sbjct: 88  NEITSLSSSQPEFWKEAYQNISNL--INRGLNIYFGLPSEVTAQISSMVSSLSNSVSSLV 145

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
           D   +      +      + I   I++ +F   D   I   +              I   
Sbjct: 146 DSFVKGIYNTAISIPQMVIFIFVTILSTYFISSDRDRIYDYIKDNVPDALLNKIIDIKDS 205

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAV 265
           +   +        I+       L   + + GV   + LG++ + +   P  G        
Sbjct: 206 MFTALFGYVKAQLILMTITFCELSLGFTIIGVKRPILLGLVISFIDAFPVLGTGGVLVPW 265

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +IY  +  +I     L +   I L ++ + + P +VG  I L  L T   +  G++  GL
Sbjct: 266 AIYEFLTKDIRMGVSLLILYVIVL-VIRQMIEPKVVGEQIGLHPLMTLITMYLGMKFFGL 324

Query: 326 LGLFIGPVLMALIAVI 341
            GL +GP++  +   I
Sbjct: 325 PGLILGPIVTLIFKNI 340


>gi|15964938|ref|NP_385291.1| putative permease protein [Sinorhizobium meliloti 1021]
 gi|15074117|emb|CAC45764.1| Putative permease [Sinorhizobium meliloti 1021]
          Length = 371

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/329 (13%), Positives = 112/329 (34%), Gaps = 10/329 (3%)

Query: 3   ETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
            +M   + I  W+++ +  +  L        P L+ + + +   P+      +   S   
Sbjct: 6   SSMGLQRQIFFWLLVLVGFIAFLLVFSSILLPFLAGMALAYFLDPVADRLE-RLGLSRLM 64

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +   V+ + +  + L+ +    + +  E + K+                     W + 
Sbjct: 65  ATIAILVAFVVVLALSLMIIVPLVVTQAAEFIQKMPGYITRLQEFLTDSQSTLLPDWLAG 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
             T    +   L     +FL T     + +     G+  L+     +   +  F+   D 
Sbjct: 125 QMTTIKQNSAKLLEQGASFLGT-----LFQQIWNSGLALLNILSLFVITPVVAFYLLLDW 179

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +  ++DS     +    ++I+R +   I     G   + +  GL  G    + G+   
Sbjct: 180 DRMVDRVDSWIPRDYVEVVRQIARDMNTTIAGFVRGQGSLCLILGLYYGIGLTMVGLNFG 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRP 298
           + +G+   +++ IP    +    +++ + +     +      +        F+    L+P
Sbjct: 240 LLIGLFAGMISFIPYVGSLVGLVLALGVALVQFWPDYVWILLVLAVFFSGQFLEGNILQP 299

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            LVG  + L  +   F L+      G +G
Sbjct: 300 KLVGKSVGLHPVWLMFALLAFGALFGFVG 328


>gi|319950224|ref|ZP_08024151.1| permease [Dietzia cinnamea P4]
 gi|319436128|gb|EFV91321.1| permease [Dietzia cinnamea P4]
          Length = 511

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 60/336 (17%), Positives = 121/336 (36%), Gaps = 23/336 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLS--------ALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+LV+ + +       L         ALII    WP+    +  K    T  A+++ +
Sbjct: 38  LAILLVAGWLISR-IGGALWVGILPILLALIISTVLWPVTGWMVRHKVP-KTLAALLSII 95

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + L    +  +    + +  +L  +   A      V  WL   P  +   +L      
Sbjct: 96  GSLGLLTGVIALIAPSIVSQSVQLADQTSEAITE---VQDWLRGPPLNIRDEQL------ 146

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               L     + L+  G   I             + ++++ +++  FFF +DG      +
Sbjct: 147 --DGLLDQLSSTLQDRGDQ-IASGVFSGVSAVGSFVVTLVLVLVLTFFFIKDGPRFLPFV 203

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                     +  ++       +        I++  + +++G A  + GVP   AL VIT
Sbjct: 204 RRNTGRTAGRHLTEVLTRAWNTLGGYIRAQAIVSFVDAVLIGLALVILGVPLAWALAVIT 263

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I   IP  GA  +     +  L+      A  + +       +    L+P L    + L
Sbjct: 264 FIAGFIPIVGAFTAGALAVLIALVANGFTTAIIVLVVIIAVQQLEGNVLQPILQSRAMNL 323

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                  G+  G    G++G F+   ++A++AV+ +
Sbjct: 324 HPGVILLGVAAGSTLFGIIGAFLAVPILAVVAVVIR 359


>gi|307637250|gb|ADN79700.1| acid membrane antigen A [Helicobacter pylori 908]
 gi|325995842|gb|ADZ51247.1| Acid membrane antigen A [Helicobacter pylori 2018]
 gi|325997436|gb|ADZ49644.1| putative membrane protein [Helicobacter pylori 2017]
          Length = 349

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 139/363 (38%), Gaps = 25/363 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  Q     + +      +Y  + F    L A ++    + +      +   S+   + +
Sbjct: 1   MKAQYFFWILFLIGFYWMIYLYQDFLMDALIAGLLCVGLFQVKVFLNKRF--SNVISSFL 58

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +  + IVPL F+ Y G   + E+        +    + +WL         +E  + 
Sbjct: 59  CVLVLASVVIVPLYFIVYKGSNVIFEI------NFEKLSALIKWLKG-----TITENLSH 107

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +    +    E F   +   ++ + +S  G   L      +F++  LFFF+  G    
Sbjct: 108 FPAIHDGVSKFLENFSAASITGYLLKVSSYIGKYSLKLVTDALFILGLLFFFFYYGERFY 167

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +   L     KKI   V  ++R   L   I  I EG+  G      G      LG
Sbjct: 168 RYFLGVLP-LGMNQSKKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFGHDGWS-LG 225

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLV-- 301
           ++  + +++P  G  + +  ++IY L  G++  A  + L+  + +  ++D  ++P L+  
Sbjct: 226 ILYGLASLVPAVGGALIWIPIAIYELYHGHVNEAIFIVLYSILLIGVLIDSVIKPILIVF 285

Query: 302 ------GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                    +K+  +  FF ++ G+   G  G+ +GP + A    + +       + ++K
Sbjct: 286 IKKRIFKTTLKINEILIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQKEQK 345

Query: 356 ISS 358
              
Sbjct: 346 ACE 348


>gi|281492409|ref|YP_003354389.1| permease [Lactococcus lactis subsp. lactis KF147]
 gi|281376073|gb|ADA65564.1| Permease [Lactococcus lactis subsp. lactis KF147]
          Length = 371

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 107/314 (34%), Gaps = 4/314 (1%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P + A  + +   P+ +    K          I  + ++ + I  +  +    + ++ 
Sbjct: 42  FVPFIIAGFLYYVFNPVVTFMEEKLRIKKVLGIFIVLLLILGMIIFAIASVIPSLISQLT 101

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE-TFLKTNGIDFI 149
            L   +    +    V  W+  +      ++++ +   +    K+    T +  N ++ I
Sbjct: 102 SL---INATGKAYPQVRAWIEGLQHNPRFAQIYDQLDVNSLVEKLNLSYTDILHNLLNSI 158

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                    I     + +I + I L++  +DG  I   L             ++   +  
Sbjct: 159 TVSVGSIVGIITSIVMVMILVPILLYYMLKDGEKIIPFLKENVLTEDRLNIFELLENMNH 218

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            I     G+ + A+   +V+   Y + G+P      +   +  +IP   P       I  
Sbjct: 219 TISRYISGVALDALLVFIVVFIGYMVLGIPYAFLFALFAGVTNLIPYVGPYIGVLPMIVT 278

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           +       A    ++  +   +    + P +VG  +K+  +     ++      G+LG+ 
Sbjct: 279 VAFNRPVTALIAVIYVLVLQQLDGNLVYPKIVGSAVKVHPVTVMILMLISGSLYGILGMI 338

Query: 330 IGPVLMALIAVIWK 343
           I      L+  I K
Sbjct: 339 IAVPAYCLVKEIVK 352


>gi|238756097|ref|ZP_04617419.1| permease perM [Yersinia ruckeri ATCC 29473]
 gi|54208730|gb|AAV31125.1| putative permease [Yersinia ruckeri]
 gi|238705703|gb|EEP98098.1| permease perM [Yersinia ruckeri ATCC 29473]
          Length = 354

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 58/353 (16%), Positives = 123/353 (34%), Gaps = 18/353 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +PQ I   +I+      LYF  G  AP+L A+++ +   WP     + +   S  
Sbjct: 10  RRRFTDPQVIALLVILLAGFCILYFFSGILAPLLVAIVLAYLLEWPTTR--LQRMGCSRL 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           + A I  +    + ++ +L +      +   LV+           +P+ L+         
Sbjct: 68  WAASIVLILFGGIALLLILVVAPTAWQQGINLVA----------DMPKMLNQFNAYAQTL 117

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGI--DFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                 L     + +++E          D + +F+    +  L   + +I + + LFF  
Sbjct: 118 PSRYPALVDAGIVDMMAENMRGKLSSMGDSVVKFSLASIVGLLTLAIYLILVPLMLFFLL 177

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D   +   +  +          ++ + + + I +   G  +  +  G+V    +++  +
Sbjct: 178 KDKDQMLNAVRRVLPRNRGLAG-QVWKEMNQQITNYIRGKVMEMVIVGIVTYLVFFILDM 236

Query: 239 PSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTL 296
              + L V+     +IP  GA I    V +  L +  I      L +   +   +    L
Sbjct: 237 RYALLLSVLVGFSVLIPYIGAVIVTIPVVLVALFQWGIGADFWTLIVAYLVVQALDGNLL 296

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            P L    + L  L     ++      G  G+F    L  L+  +        
Sbjct: 297 VPILFSEAVNLHPLVIILSVIIFGGMWGFWGVFFAIPLATLVKAVIHAWPEEF 349


>gi|320323392|gb|EFW79480.1| permease, putative [Pseudomonas syringae pv. glycinea str. B076]
          Length = 357

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 54/343 (15%), Positives = 131/343 (38%), Gaps = 14/343 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +++  +  L     P L AL++ +   P+                   T+SV+ +F +
Sbjct: 13  LALLVAFVVLLHTILTPFLVALLLAYMGDPLVDRLERAGLSR--------TLSVVAVFGL 64

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLK 134
             L L    ++ +  L  ++    +    +  WL    +P       L        +   
Sbjct: 65  FTLVLMALLLVLVPMLAKQLFRLYELAPQILDWLQHSALPWVQAKFGLADGFWKFDKIKA 124

Query: 135 ILSETFLKT-NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            +SE   +  + +  +   A+   +  + +  +++ + +  F+  RD   ++ ++  L  
Sbjct: 125 AISEHMGQAGDIVSVVLSQATASSLALIGWLTNLVLIPVVCFYLLRDWDIMTGKICGLLP 184

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   K++    +V+ +   G  ++ +G G++  +   L G+   + +GVI  + A+
Sbjct: 185 RQREGQIVKLAGECHEVLGAFIRGQLLVMVGLGVIYAAGLMLVGLELGLLIGVIAGLAAI 244

Query: 254 IPGGAPISFTA---VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +P    +       V+      G+++    +     I   +    L P LVG  I L  +
Sbjct: 245 VPYMGFVIGIGSALVAGLFQFGGDLYPMMGIVAVFMIGQALEGMVLTPLLVGDRIGLHPV 304

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              F ++ G    G  G+ +   + A+I V+ +      K+++
Sbjct: 305 AVIFAILAGGELFGFTGILLALPVAAVIMVLVRHMHDVYKDSE 347


>gi|317129332|ref|YP_004095614.1| sporulation integral membrane protein YtvI [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474280|gb|ADU30883.1| sporulation integral membrane protein YtvI [Bacillus
           cellulosilyticus DSM 2522]
          Length = 353

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 65/342 (19%), Positives = 139/342 (40%), Gaps = 4/342 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M  +    + I   + + +  + LYF+     P++ ALI      PI +  I + + S +
Sbjct: 1   MATSASIKKYIYIVLGIIVAALLLYFVLPVSVPIIVALITALFLAPIVNVLIRRAKLSRS 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWA 119
               I  +S + +  + + FL    + ++   +  +    N+       +L++I      
Sbjct: 61  LAVFIVFISFVLVISLIVYFLLTRAITQLNSFIENLPYTINEIAYAWTTFLNNIESQFGQ 120

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                +       +  L ET +    ID +    +   +    Y +S++  +IAL+ F  
Sbjct: 121 YSPDLRQEIDDVVMGFLIETRMNLQEIDLVG-HVTSILIKIPSYIVSLLVYLIALYLFLM 179

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D   + ++  S            ++  +  V+   F    +++I   +V     W+    
Sbjct: 180 DLPRLKEKAMSYMTDKTAEKVTFMASRLSYVVFGFFKAQFLVSIIIFVVTLIGLWIIAPE 239

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             + + ++  ++  IP  G+       ++Y +I GN   A  L +  AI L  + +T+ P
Sbjct: 240 VAIIMSIVIWVIDFIPIIGSIAVLAPWALYHIIAGNTALAVQLLVLAAILL-TIRRTVEP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            ++G  I L  L T   L  G++ +G+LG  +GP+++ L   
Sbjct: 299 KVMGHHIGLSPLATLISLFIGLQLLGVLGFILGPLVVILFTS 340


>gi|145225428|ref|YP_001136106.1| hypothetical protein Mflv_4850 [Mycobacterium gilvum PYR-GCK]
 gi|145217914|gb|ABP47318.1| protein of unknown function UPF0118 [Mycobacterium gilvum PYR-GCK]
          Length = 394

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 104/301 (34%), Gaps = 14/301 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P+  AL++    WP      +K         ++  +  + +    +  +    + + +
Sbjct: 55  VLPLALALVVCTVLWPPVRWLRNK-GVPPAAAVLVVLLLAVGVLAGVVAAVAPAIVEQSQ 113

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           EL  +        + V  WL   P  +  ++L         S        L ++      
Sbjct: 114 ELAEQATAGI---VQVRDWLGGPPLNISEAQL--------NSGVAAITDRLNSSSAQIAS 162

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              +  G       +++   I+  FFF +DG      L          +  ++   V   
Sbjct: 163 GVFTGVGAAT-SALVTLFAAIVVTFFFLKDGPGFIPWLRRTVGQPAAPHLAEVLDRVWTT 221

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
           +        +++  + +++G    + GVP   AL +IT I   IP  GA ++     +  
Sbjct: 222 LGGFIRTQALVSFVDAVLIGIGLVVLGVPLAYALAIITFIGGFIPIVGAFVAGGLAVLIA 281

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           L+     +A  +         +    L+P+L    +KL  +     +  G  T G++G F
Sbjct: 282 LVSNGPVDALIVLGIIVAVQQLEGNVLQPWLQSKSMKLHAVIVLLAVTLGASTFGVIGAF 341

Query: 330 I 330
           +
Sbjct: 342 L 342


>gi|297543538|ref|YP_003675840.1| sporulation integral membrane protein YtvI [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296841313|gb|ADH59829.1| sporulation integral membrane protein YtvI [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 354

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 57/354 (16%), Positives = 122/354 (34%), Gaps = 11/354 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M   +     I + +++  + +  Y     +  F  P + ALI      P  +    K +
Sbjct: 1   MNNYLKYSDIIKKIILIVSVFIIFYLVIFKIIPFLMPFVMALIFAVIIDPGVNFLEKKLK 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVS-KVVLANQHGIPVPRWLSDIPG 115
                 + I  + ++ +    +  +    + E+  L       AN     +   +  I  
Sbjct: 61  VPRGLASFILLLILIGVIGSLIAIIVTQLIYELSSLAEISTNYANTINDAILNLVDRI-- 118

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
                     +++      + S     +     +  +   F     ++    +  ++A F
Sbjct: 119 -RTYYISLPPNITSLIESNMYSILNYISLFAKNLATWLLNFATKLPNFFFMTLITLVATF 177

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F  +D   I   +       +  + K I   + K        +  I +   L +     +
Sbjct: 178 FISKDKNLILDFIKRQIPSHWAQHAKNIQIDLLKTFFGYLRAVAAIMLITFLEVSIGLVI 237

Query: 236 AGVPSHVALGVITAIMAMIPG-GAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVD 293
            G      LG+   I+  +P  G+       ++Y ++I  N      L +   + + +V 
Sbjct: 238 IGFDYPFLLGLFVTIVDALPVLGSGSVMIPWALYNIIIIKNYMVGIYLLILYILVV-VVR 296

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           + + P +VG  I L  L T   +  GV+  G LGL IGPV + +   + +  I+
Sbjct: 297 QMIEPKIVGQSIGLHPLVTLLSMFIGVKLFGALGLIIGPVFVVVFKALQRAEII 350


>gi|289207740|ref|YP_003459806.1| hypothetical protein TK90_0555 [Thioalkalivibrio sp. K90mix]
 gi|288943371|gb|ADC71070.1| protein of unknown function UPF0118 [Thioalkalivibrio sp. K90mix]
          Length = 364

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 58/313 (18%), Positives = 110/313 (35%), Gaps = 6/313 (1%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + I+ V+LY L     P L AL+IG+   P+ +    +   S T   ++  V VM     
Sbjct: 23  LVILGVALYLLAPILTPFLIALLIGYLFNPLVTRLAVRTGGSRTLATLVIFVLVMLGLAG 82

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +L L    M + + L+  +           R   +   G     L    L    +    
Sbjct: 83  LVLVLIPLAMAQFERLMLLLPEVIAWFDEQVRPWIEQQAGDRLPALEPAALQELLAEHWR 142

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               L    + ++    S   +  L+  L    + +  F+  RD   +   L  L    +
Sbjct: 143 EAGGLAGGLLHWLGSSTSALVLGVLNLVL----IPVVSFYLLRDWPRLVAGLHDLLPRAW 198

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                + +      + +   G  ++ +  GL       +AGV   +A+G+I  +++ +P 
Sbjct: 199 RDPVTRFAVESDNTLGAFLRGQLLVMLALGLFYAITLSVAGVQMGLAIGLIAGLVSFVPY 258

Query: 257 GAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
              I     A +  L           + +  A+   +    L P+LVG    L  +   F
Sbjct: 259 VGVIVGIVLATAAVLFQGDGWTLLLAVLVIFAVAQVLESVVLTPWLVGDRTGLHPVAVIF 318

Query: 315 GLVGGVRTMGLLG 327
            ++ G +  G  G
Sbjct: 319 AVLAGGQLFGFFG 331


>gi|154497012|ref|ZP_02035708.1| hypothetical protein BACCAP_01305 [Bacteroides capillosus ATCC
           29799]
 gi|150273411|gb|EDN00539.1| hypothetical protein BACCAP_01305 [Bacteroides capillosus ATCC
           29799]
          Length = 424

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 53/342 (15%), Positives = 125/342 (36%), Gaps = 11/342 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +++  ++     L G   P + AL++ +   P       +   S   L+++  + +  +
Sbjct: 51  ILVLLFLVYGAPPLLGLLMPFVLALVLTWILNPAIVKVQRRFGGSRKALSLVMLILIFTI 110

Query: 74  FIVPLLFLFYYGMLEMKELVS-----KVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               L  L Y  + E+  LV               + +  +LS +  G+   ++     +
Sbjct: 111 AGGILAALVYSIVSEVASLVMNWPSIWADSLQPAIVGLEEFLSGLFIGLP-DQVSQGATA 169

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               L       + +  +      A  F      + ++++  ++A +F   D   +   +
Sbjct: 170 ALDKLVAWLNEMIPS-LLSHAGSAAGSFAFSIPSFAVALVIFVMATYFIASDYPRLRLMV 228

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                     ++  + R              I+++    +L   + +   P  V L  + 
Sbjct: 229 TDRLSPSVRDFFGSVKRTAVAAFGGYVKAQLILSVVIFFILLVGFVVIRQPYSVLLAFLL 288

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNAT-CLFLWGAIELFIVDKTLRPFLVGGPIK 306
           A++  IP  G+       ++  L  G   +A   + +WG I LF   +   P +VG    
Sbjct: 289 AVLDFIPIVGSGTVMVPWAVADLFLGEYRHAVELMVIWGIIALFR--RGAEPKVVGDQTG 346

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L  + +   +  G++  G+ G+ +GPVL  ++  I +  ++ 
Sbjct: 347 LSPILSLISIYVGMKIAGVAGMILGPVLCMVVINIGRLGVLD 388


>gi|325962604|ref|YP_004240510.1| permease [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468691|gb|ADX72376.1| putative permease [Arthrobacter phenanthrenivorans Sphe3]
          Length = 444

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 58/344 (16%), Positives = 121/344 (35%), Gaps = 17/344 (4%)

Query: 15  MIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +I+ +    ++ L        PV+ A ++     P+      +    S     +  V  +
Sbjct: 54  LILLVGGALVWLLSKISFLIIPVMVAALLAGLLNPVVGWL-KRYRLPSGLAVAVTVVGFI 112

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L    L  +    +    EL S+ +   +    +  WL+D P  + A+++         
Sbjct: 113 GLIAGSLALVGRQLVSGFGELWSEALAGVK---QIQDWLADGPLHLTAAQMDQYLKEATT 169

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +L+  + +         I   A  FG     +   +I  +  L FF  +G  I   L  L
Sbjct: 170 ALQDNTSS---------IVSGALSFGSTAGHFAAGLILALFILIFFLLEGDRIWAFLVRL 220

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                 A      R     + S       +A  + + +G+   + GVP  + L V+  I 
Sbjct: 221 LPRKARAAAFGAGRKGWTSMVSYARIQMFVAFVDAVGIGAGAAIIGVPLALPLSVLVFIG 280

Query: 252 AMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + IP    +   A+++ L L+     NA  +     +   +    L+P ++G  + L  +
Sbjct: 281 SFIPIVGALVTGAIAVLLALVANGPINALIMLGIVLLVQQLESHILQPLVMGKAVALHPV 340

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                +  G    G+ G      ++A+     +       E+++
Sbjct: 341 AVILSVAAGSYLAGIPGALFSVPILAVANSAVRYIAARTWEHEQ 384


>gi|4098497|gb|AAD00285.1| putative membrane protein [Streptococcus mutans]
          Length = 395

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 54/325 (16%), Positives = 122/325 (37%), Gaps = 3/325 (0%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  F A ++  L+I    + +    +   E   T   +  T+  + +  + +  +  +  
Sbjct: 55  LLSFLAVIMLPLVISALLYYLLKPIVDFIEIRGTSRVMAITIVFVIIAGLLVWGIANFFP 114

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
           +  ++L S +     +   V   +S +      +    +  +   +    +  + +    
Sbjct: 115 MLNEQLTSFIKYLPSYVRSVDAQVSKLLRNDLLASFRPQIENAVTNFSQKAVDYAEPFSK 174

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +  +A  F  +     ++II     +F+  RD   + +   S           +I   
Sbjct: 175 GAV-TWAGNFASLIARVTVAIIISPFIVFYLLRDSSKMKEAFVSYLPTKMRQPIHRILGD 233

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAV 265
           V + +       + +AI  G +    + + G+   V  G+I   + MIP  G+ ++   V
Sbjct: 234 VNRQLAGYVQRSSTVAIIVGFMFSIMFTIIGLRYAVTFGIIAGFLNMIPYLGSFLATIPV 293

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            I  L++G       + L   +E  I  + + P ++G  + +  +   F L+      G+
Sbjct: 294 FILALVEG-PVKVVKVALVFIVEQTIEGRFVSPLVLGSKLSIHPITIMFILLTAGSMFGV 352

Query: 326 LGLFIGPVLMALIAVIWKESIMAIK 350
            G+F+G  + A I V+ KE     K
Sbjct: 353 WGVFLGIPVYASIKVVVKEIFEWYK 377


>gi|78048658|ref|YP_364833.1| putative permease (PerM) family protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325926062|ref|ZP_08187425.1| putative permease [Xanthomonas perforans 91-118]
 gi|78037088|emb|CAJ24833.1| putative permease (PerM) family protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325543520|gb|EGD14940.1| putative permease [Xanthomonas perforans 91-118]
          Length = 388

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/330 (15%), Positives = 124/330 (37%), Gaps = 12/330 (3%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           +L  +  L     P + AL++ +   P+          S     ++  V    LF++ L+
Sbjct: 25  VLWVVSLLAPILTPFVLALLLAWLGDPLVDRIERA-GRSRNVAVMLVFVLATLLFVLALM 83

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            L      ++  L+  +       I      + IP     + +       P+ L     +
Sbjct: 84  ILVPMIERQIMTLIDALPQMRNWAIG-----TAIPWLEAKTGMQLMAWLDPERLIDWIRS 138

Query: 140 FLKTNGI--DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
             +  G     +  + SR G   + + +++  + I  F+F RD   + +++ ++    + 
Sbjct: 139 HWEQAGGAAKTLFGYVSRSGFAMVTWVINLALLPILAFYFLRDWDRLVERVAAVIPRAYI 198

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-- 255
               ++++    V+     G  ++ +  G +  +   + G+   + +G+I  +++ IP  
Sbjct: 199 GTVSRLAQESNDVLGGFIRGQFLVMLALGAIYATGMSIIGLNLGLLIGIIAGLISFIPYL 258

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIKLPFLPTF 313
                I    ++  +  +G                 +++   L P +VG  I L  +   
Sbjct: 259 GATTGIVLALLAAIVQAQGLDLKLLVGVGVVFTVGQLLESYVLTPRIVGDKIGLHPVAVI 318

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           F ++ G +  G LG+ +   + A+  V+ +
Sbjct: 319 FAVMAGGQLFGFLGMLLALPVAAVANVLLR 348


>gi|270292832|ref|ZP_06199043.1| membrane protein [Streptococcus sp. M143]
 gi|270278811|gb|EFA24657.1| membrane protein [Streptococcus sp. M143]
          Length = 387

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 57/350 (16%), Positives = 122/350 (34%), Gaps = 11/350 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI L  L FL     PV+ + ++ +   PI       K         I  V +    I
Sbjct: 42  ISFIFLPVLDFLGVVMLPVILSGLLYYLLNPIVDWMEKHKINR-VLAISIVFVIIGLFII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      V    +    V   L              + L++  +   
Sbjct: 101 WGLAVAIPNLQRQVLNFAKNVPTYLKDADMVINDLVTKRLPDDFRPQLEQVLANVSTEAT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +  + + +  ++++  F S    +     +++I +   LF+  RDG  +   L       
Sbjct: 161 IWASKISSQAVNWVSAFISSVSQV----IVAVIIVPFMLFYLLRDGKGLRDYLTKFIPTK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   V K + +   G   +AI   ++    + + G+   V LG+   I+ ++P
Sbjct: 217 LKEPAGEVLSDVNKQLSNYVRGQVTVAIIVAIMFIIFFKIIGLRYAVTLGITAGILNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPVMLLKVVIVFIVEQTIEGRFVSPLILGSQLNIHPINVLFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI------WKESIMAIKENKEKISSN 359
           L+      G+ G+ +G  + A   V+      W + +  + E  E+I S 
Sbjct: 337 LLTSGSMFGIWGVLLGIPVYASAKVVISAIFNWYKKVSGLYEEGEEIKSE 386


>gi|255522001|ref|ZP_05389238.1| membrane protein [Listeria monocytogenes FSL J1-175]
          Length = 318

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 107/291 (36%), Gaps = 6/291 (2%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
           F+ K++       ++  ++ + L ++ ++ L      ++ EL   +    Q      +WL
Sbjct: 5   FLEKRKVPRLLSVILIFIAFITLVVLAVMQLGPTLADQVAELAKAIPGYWQ---DFEKWL 61

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
            D+       +L    +        +S   + +  +D +             + + ++ +
Sbjct: 62  QDLSNNSALKDL---DIKQELEKLNISLPKIMSVVVDGVASSFGAIVSFVSSFVMILVTV 118

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
              +F+ ++DG    +           +  K+I + + K I +      I  +  GL   
Sbjct: 119 PFIVFYMFKDGHKFVESSGRFFPAGIRSEAKQIIKEMNKTISTYISSQAIDCMFVGLFTF 178

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
             Y + G P  +  G I     +IP   P    A ++ + +  +   A  + +   I   
Sbjct: 179 IGYLIIGQPYALLFGFIAGATNIIPYLGPFIGAAPAVIVALFTSPVQALLVIVVVTIVQQ 238

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           I    L P+++G  + +  L     L+      G+ G+ +G  L A++  I
Sbjct: 239 IDSNLLSPYIMGKSLSIHPLTIIIILIVAGNLAGIFGMILGVPLYAVVKTI 289


>gi|167629939|ref|YP_001680438.1| domain of unknown function, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167592679|gb|ABZ84427.1| domain of unknown function, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 365

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 59/328 (17%), Positives = 122/328 (37%), Gaps = 15/328 (4%)

Query: 8   PQGIMRWMIMF----IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           P+G  R +++     I+L+  Y L+    P   A ++ +  +P                 
Sbjct: 27  PKGRWRILLVAGFWAIVLLLSYLLRQTLVPFAVAFVLAYLLYPGVVWLE-----KGGLSR 81

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEM-KELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           V++ ++V  +       L  +GM  +  EL    V   Q+   +  WL+ I       ++
Sbjct: 82  VVSILAVFAVVFGGFASLIAFGMPRIFSELNRFSVQLPQYTQQMQAWLARI-----QQDM 136

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                                  I    R+     +   +    I+ + +  F+F RD  
Sbjct: 137 IQSGFPPGIQQVWSDTLARGEATILAAVRWLLESAVSLAENAFDIVLIPVMSFYFLRDWE 196

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           +I +   +L      A+ + +   V +++R+      ++A+  G++      L G+   +
Sbjct: 197 AIGKGSLNLVPQNLRAHVQIVGGEVNRILRAVVRCNFLMALVVGVLTTVGLTLIGLEYSL 256

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            +G+I  I  +IP   P+     ++ + +  +   A    L   +   I    L P L+G
Sbjct: 257 LIGIIAGIADLIPYFGPLIGMVPALVVGLLESPRLALYAVLIMIVVQQIEANLLSPKLLG 316

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L   F L+ G    G++GL +
Sbjct: 317 DSVGLHPLAVIFALLAGGHLFGIVGLLL 344


>gi|49474324|ref|YP_032366.1| permease protein [Bartonella quintana str. Toulouse]
 gi|49239828|emb|CAF26221.1| Permease protein [Bartonella quintana str. Toulouse]
          Length = 403

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/330 (13%), Positives = 106/330 (32%), Gaps = 13/330 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  Q       +   ++ +        P ++ +++ +   PI    + K      F  ++
Sbjct: 45  MKKQIFFWVGTLVFFILFMLVFGSILLPFVAGIVLAYFLNPIVQ-LLEKFGICRVFGTIL 103

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T+ ++ +F+  L+ L      ++++ VS  +    +       +           +   
Sbjct: 104 ITLFIIFVFVAALIILIPITSWQIQQFVSNGLPVYINR------IQTFFVEHDFDWVRRY 157

Query: 126 HLSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
             S P  L    +  L  +   I  +     + G   ++     +   +  F+   D   
Sbjct: 158 FGSDPNELHSNIKGLLGQSSDFITSLLNSLLKSGKSIVNIVSLFVVAPVVAFYMLLDWPR 217

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +   +DSL         + I   + + I     G   + +  G        + G+   + 
Sbjct: 218 MVTAVDSLIPRDHLETVRSIFHEMDRAIAGFVRGQGTVCLILGGYYSIGLTITGLNFGLL 277

Query: 244 LGVITAIMAMIP----GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           +G+   +++ +P        +    V+       N      + +   I  FI    L+P 
Sbjct: 278 IGMFIGLISFVPYIGTMSGFVLSVGVAWVQFYPNNWGWIIVVIVIFLIGQFIEGYILQPK 337

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           LVG  + L  +   F L       G  G+ 
Sbjct: 338 LVGSSVGLHPVWLMFALFAFSSLFGFTGML 367


>gi|289434177|ref|YP_003464049.1| hypothetical protein lse_0810 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170421|emb|CBH26961.1| membrane protein, putative [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 378

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 118/333 (35%), Gaps = 14/333 (4%)

Query: 16  IMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           ++FI+L   Y            F P+L A  + +   P+      +K        +I  +
Sbjct: 24  VVFILLQMKYIFSPIGIIVSTLFMPILVAGFLFYLFNPLVLFLEKRKVPR-ILSVIIIFI 82

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           + + L I+ ++ L      ++ EL   +    Q      +WL  +        +    L 
Sbjct: 83  AFIALIILAIMQLGPTLADQVTELAKAIPGYWQ---DFEKWLQGLSNNSSLQGV---DLK 136

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                  +S   + +  +D +             + + ++ +   +F+ ++DG    +  
Sbjct: 137 AELEKLNISLPKIMSVVVDGVASSFGAIVSFVSGFVMILVTVPFIVFYMFKDGHKFVESS 196

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                       K+I + + K I +      I  I  G+     Y + G P  +  G+I 
Sbjct: 197 GKFFPAAIRTEAKQIIKEMNKTISTYISSQAIDCIVVGIFTFVGYLIIGQPYALLFGLIA 256

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
               +IP   P    A ++ + +  +   A  + +   I   +    L P+++G  + + 
Sbjct: 257 GATNIIPYLGPFIGAAPAVIVALFTSPLQALLVIIVVTIVQQLDSNLLSPYIMGKSLSIH 316

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L     L+      G+ G+ +G  + A++  +
Sbjct: 317 PLTIIIILIVAGNLAGIFGMILGVPVYAVVKTV 349


>gi|262373133|ref|ZP_06066412.1| PerM family permease [Acinetobacter junii SH205]
 gi|262313158|gb|EEY94243.1| PerM family permease [Acinetobacter junii SH205]
          Length = 397

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 64/355 (18%), Positives = 130/355 (36%), Gaps = 11/355 (3%)

Query: 6   LNPQGIMRWMIMF---IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  Q + R  I+    ++L  LY LK    P + A  I +   P+  + + K        
Sbjct: 1   MQDQVLRRIFILAGLALLLWVLYLLKPVVLPFVGAFFIAYLFSPLVDTLV-KFRLPRWLA 59

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ-HGIPVPRWLSDIPGGMWASE 121
             +  V +  L  V L FL      ++      +             W+S          
Sbjct: 60  ISLVFVGIGVLLTVVLWFLAPLVWEQLIYARDSIPAGIHWINATFLPWVSHT---FNVVP 116

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +        +++    +T    + I  +    ++ G+ F+     +I + I  F+F  D 
Sbjct: 117 MEIDTEQLSKAVMDYIQTNYSADSIQTMALRVAQSGLNFIQLGGIVILIPIIAFYFLLDW 176

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   L  L    + A    I R    V+ +   G  ++ +  G+V      L G+   
Sbjct: 177 ERMLDSLRRLIPRPYEASTLTIVRECHSVLGAFVKGQFLVMLLLGIVYAVGLQLIGLEVG 236

Query: 242 VALGVITAIMAMIP---GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           + +G++  + ++IP    G  I    ++       +      + +   I   +    L+P
Sbjct: 237 LIIGMVAGLASIIPYLGFGVGIIAAVIATLFQFGIDWMQLLLVGVVFMIGQMVEGYILQP 296

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           FL+G  I L  +   F ++ G +  G LG+ I   + A+I V+ K +    + ++
Sbjct: 297 FLLGDKIGLSPVAVVFAVLAGAQLGGFLGMLIALPVAAVIVVLLKHARNNYERSR 351


>gi|50085703|ref|YP_047213.1| PerM family permease [Acinetobacter sp. ADP1]
 gi|49531679|emb|CAG69391.1| putative permease (PerM family) [Acinetobacter sp. ADP1]
          Length = 396

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 55/336 (16%), Positives = 117/336 (34%), Gaps = 20/336 (5%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF------IVPLLFL 81
           K    P + A +I +   P+     SK          I  + +  L       +VPL++ 
Sbjct: 26  KPVVIPFVGAFLIAYLFSPLVEKL-SKIGLPRWLSISIVFIGIGVLLTWAMWYVVPLVWQ 84

Query: 82  -FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
              Y    +   +  V            W+S          +          +    +T 
Sbjct: 85  QLMYARDSIPSGIHWVNAT------FLPWVSHT---FNVERMEIDTDQISTVVMEYIQTN 135

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
              + I  +    ++ G+ F+    +I+ + I  F+F  D   +   L  L    +    
Sbjct: 136 YSADSIQTMALRLAQSGLNFIQIGGTIVLIPIISFYFLLDWDRMLNSLRRLIPRPYEEST 195

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
            +I      V+ +   G  ++ +  G+V      L G+   + +G++  + ++IP     
Sbjct: 196 LRIVYECHSVLGAFVKGQFLVMLLLGIVYAVGLQLIGLEVGLIIGMVAGLASIIPYLGFA 255

Query: 261 SFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
                ++   +     +      + +   I   +    L+PFL+G  I L  +   F ++
Sbjct: 256 VGIIAAVIATVFQFGVDWMQLALVGVVFMIGQAVEGYILQPFLLGDKIGLSPVAVVFAVL 315

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            G +  G LG+ I   + A+I V+ +    A +  +
Sbjct: 316 AGAQLAGFLGMLIALPVAAVIVVLLRHLREAYEHTQ 351


>gi|119960690|ref|YP_948306.1| permease [Arthrobacter aurescens TC1]
 gi|119947549|gb|ABM06460.1| putative permease [Arthrobacter aurescens TC1]
          Length = 430

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/320 (14%), Positives = 108/320 (33%), Gaps = 11/320 (3%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           +++AL I     P+     S+K      + +I+  +++         L    + ++ E+V
Sbjct: 122 IVAALFIALGLDPVVRWLESRKVPRPAGI-LISVSALVLAVAGFFATLIPTIVEQVSEIV 180

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
            +           P W+       +     ++     +    L +       +  I    
Sbjct: 181 RQA----------PEWIRGFLDSDFFRNADSQFGVRDRITTELDKFVKDPEAMGGIFGGV 230

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
             FG    +     + +++   +F     S+ +    L         + +S  +   + +
Sbjct: 231 VGFGSTVANGLFGSLIVLVLSLYFLAALPSMKKWAYRLAPRSRRPRVEALSEAITDSVGN 290

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
             +G   +A+   +       + G+P  V L  + A++A IP    +    V I + +  
Sbjct: 291 YVIGQVCVALLNAIFAFILMTILGIPFSVLLAFVVALLAFIPLVGGMIAAVVVILVALTA 350

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
               A    +     L      + P ++   + +P       ++ G   +G+LG  I   
Sbjct: 351 GWQTAVVYAIAYFAYLQFEAYFISPRIMQRAVAVPGAVAVISVIAGGSLLGVLGALIAIP 410

Query: 334 LMALIAVIWKESIMAIKENK 353
             A I ++ KE  +  ++  
Sbjct: 411 TAAAIMLLMKEVFIVRQDRH 430


>gi|114332236|ref|YP_748458.1| hypothetical protein Neut_2276 [Nitrosomonas eutropha C91]
 gi|114309250|gb|ABI60493.1| protein of unknown function UPF0118 [Nitrosomonas eutropha C91]
          Length = 363

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 54/345 (15%), Positives = 122/345 (35%), Gaps = 8/345 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           ++ I+   +Y L     P L A  I +   PI +    +K    T   V   +  + +FI
Sbjct: 17  LIGIVSALIYLLSPILTPFLLAAGIAYICNPIVTWLEVRKVPR-TLSTVFVMLMAIGIFI 75

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +L +      E+  L+ ++                IP       +  +         +
Sbjct: 76  TMILIMLPLFEKEISRLIERIPSFLDMLSNRL-----IPWVEGVFNIELQIDVDMLKDLL 130

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                                G++ L + +++I + + LF+  RD   + +Q   L    
Sbjct: 131 AEHWQSAGGVAARALPTLKSGGLVILGFLINLILVPVVLFYLLRDWNILIKQAGELIPPA 190

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +      +SR    V+     G   +     +   +  WL G+   + +G+++ ++  +P
Sbjct: 191 WQKQIFTVSREADDVLAEFMRGEIAVITIMSIYYVTGLWLVGLEFSLPIGLLSGVLVFVP 250

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF--IVDKTLRPFLVGGPIKLPFLPTF 313
               I+   ++ +  +      ++ + +W  I     +    + P LVG  I L  +   
Sbjct: 251 YLGTITGLTLATFAALTQFQEWSSIIIVWVVIGSGQLLEGMLITPRLVGERIGLHPVAVI 310

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           F L+   +  G +G+ +   + A++ V+ +       E  E   +
Sbjct: 311 FSLMAFGQLFGFIGILLALPISAILLVLLRHLHTQYMEVMEDDET 355


>gi|163740901|ref|ZP_02148294.1| membrane protein [Phaeobacter gallaeciensis 2.10]
 gi|161385892|gb|EDQ10268.1| membrane protein [Phaeobacter gallaeciensis 2.10]
          Length = 381

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 59/342 (17%), Positives = 121/342 (35%), Gaps = 18/342 (5%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             +I V L+ L     P +    I +   PI     +    S T    + TV  + LF +
Sbjct: 42  AVVIAVVLWALGDVLLPFVLGAAIAYLIDPIADRLEA-MGLSRTAATAVITVFAVLLFAI 100

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            LL +    + +M +L   +  A ++               +  +            +  
Sbjct: 101 ILLVVVPTLIYQMLDLAKVLPEAFKNL------------RDFVQQQAPSLFDEGSRAQQT 148

Query: 137 SETFLKTNGIDFIPRFASRFGM--IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
             +  +T     I       G     ++  +  + + +   +   D   +  ++D L   
Sbjct: 149 IVSIAQTLQSKAIGVLEGVVGSAVSLVNVLILFVIVPVVAVYLLLDWDRMVARIDELLPR 208

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 ++++  + KV+ S   GM  + +  G     A  L G+   +A+G I  ++  I
Sbjct: 209 DHAPTIRELAARIDKVLASFIRGMGTVCLILGTYYAVALMLVGLNFGLAVGFIAGLVTFI 268

Query: 255 PGGAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           P    +   A++I L +    G+ ++   +    AI   I    L P LVG  + L  + 
Sbjct: 269 PYLGALIGGALAIGLALFQFWGDWWSIGMVAGVFAIGQVIEGNLLTPKLVGNSVGLHPVW 328

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               L       G +G+ I   + A + VI +  +    +++
Sbjct: 329 LLLALSVFGALFGFVGMLIAVPVAAALGVIARFLVEQYLDSR 370


>gi|94498879|ref|ZP_01305417.1| hypothetical protein RED65_08834 [Oceanobacter sp. RED65]
 gi|94428511|gb|EAT13483.1| hypothetical protein RED65_08834 [Oceanobacter sp. RED65]
          Length = 356

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 126/340 (37%), Gaps = 9/340 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +I      L+    P +   +  +   P+     +    S T    I  + ++ +  +
Sbjct: 18  IALIGWLFANLEPVLMPFIVGALFAYLGDPVADRLEN-IGLSRTSAVCICFLVILAVIAI 76

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQ-HGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            LL +    + ++K L   +          V  WL+   G          +  + +   +
Sbjct: 77  FLLLVVPTIVHQVKVLYGFLPDILNWLQKNVMPWLNSNMGIKVED----FNFQNIREEIV 132

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +   L+    D +    +  G  F+ +  ++  + +  F+  RD   I ++   L    
Sbjct: 133 QNWGGLQKVMKDVLAGIGNSTGS-FVAFLANLAIVPVVGFYLLRDWDVIMEKALKLLPGR 191

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +++     V+ + F G   +     ++ G   WL G+     +G+   + +++P
Sbjct: 192 YQQATHELAAECDDVVGAFFKGQLWVMTALAIIYGFGLWLVGLKLAFLIGLFAGLASIVP 251

Query: 256 --GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
             G A     A+       G  +    + +   +   I    L P LVG  I L  +   
Sbjct: 252 YLGAALGIVAAMVAGAFQFGMGWELLLIGVVFGVGQAIESMILTPILVGDKIGLHPVAVI 311

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           F ++ G +  G +G+ +   + A+IAV+ + +    K+++
Sbjct: 312 FAIMAGGQLFGFIGVLVALPVAAVIAVLLRHAHDFYKDSE 351


>gi|209964849|ref|YP_002297764.1| permease protein, putative [Rhodospirillum centenum SW]
 gi|209958315|gb|ACI98951.1| permease protein, putative [Rhodospirillum centenum SW]
          Length = 387

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/346 (14%), Positives = 123/346 (35%), Gaps = 17/346 (4%)

Query: 5   MLNPQGIMRWMI-MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           M + + +  WM+ + + +  ++ L     P ++ + + +   P+      +        A
Sbjct: 1   MNDRRPLRFWMVGLGVFITLIWLLHEMLLPFVAGMAVAYLLDPLADRME-RTGLPRWLAA 59

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVS----KVVLANQHGIPVPRWLSDIPGGMWA 119
            +  ++ M    V  + LF     ++ ++       +    +  +P    +         
Sbjct: 60  TLVLLAFMLGATVAAVLLFPLMQAQIVQIAESAPGWIAWVKEEFLPDLEAIVARLSPEDV 119

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
             L      +  ++   +   L+   +          G+  +D    ++   +  F+  R
Sbjct: 120 ERLRQAVGEYAGTVVSWTAALLRGLLVQ---------GVALVDVLSVLLITPVVAFYLLR 170

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D   + + +D           +   R V + +     G   + I  GL+  +A  L G+ 
Sbjct: 171 DWDRLVRTVDGWLPRPHAPTIRGQVREVDRTLAGFVRGQATVCIALGLLYAAALSLTGLN 230

Query: 240 SHVALGVITAIMAMIPGGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
             + +G+I  +++ IP    +      V I +    +++    +     +   I    L 
Sbjct: 231 FGLIVGLIAGLLSFIPYVGSLVGFGLSVGIAVFQYDDLWRIALVAGIFVVGQTIEGYFLT 290

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           P LVG  + L  +   F L+ G    G +G+ +   + A+I V+ +
Sbjct: 291 PKLVGERVGLHPVWVMFALLAGGSLFGFVGVLLAVPVAAVIGVLVR 336


>gi|256751431|ref|ZP_05492309.1| sporulation integral membrane protein YtvI [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256749650|gb|EEU62676.1| sporulation integral membrane protein YtvI [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 354

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 53/343 (15%), Positives = 119/343 (34%), Gaps = 6/343 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R   +  + ++   +  I  + ++ +  F  P + AL++     P  +    K +    
Sbjct: 6   LRYGDIIKKALLIVAVFIIFYLIIFKIIPFLMPFVVALLLAVIIDPGVNFLEKKLKVPRG 65

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVS-KVVLANQHGIPVPRWLSDIPGGMWA 119
             + I  + ++ +    +       + E+  L       AN     +   +  I      
Sbjct: 66  LASFILLLILIGVIGSLIAISITQLIYELSSLAEISTNYANTINDIILNLVDRI---RMY 122

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                 +++      + S     +     +  +   F     ++    +  ++A FF  +
Sbjct: 123 YVTLPPNITSLIENNMQSILNYISLFAKNLATWLLNFATKLPNFFFMTLITLVATFFISK 182

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D   I   +       +  + K I   + K        +  I +   L +     + G  
Sbjct: 183 DKQLILDFIKRQIPSHWAQHAKNIQVDLLKTFFGYLRAVATIMLITFLEVSIGLAMIGFD 242

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
               LG++  I+  +P  G+       ++Y +I  N      L +   + + +V + + P
Sbjct: 243 YPFLLGLLVTIVDALPVLGSGAVMVPWALYNIIMKNYMVGIYLLILYGLVV-VVRQMIEP 301

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            +VG  I L  L T   +  G +  G LGL IGPV + +   +
Sbjct: 302 KIVGQSIGLHPLVTLLSMFIGAKLFGALGLIIGPVFVVVFKAL 344


>gi|296111044|ref|YP_003621425.1| transport protein [Leuconostoc kimchii IMSNU 11154]
 gi|295832575|gb|ADG40456.1| transport protein [Leuconostoc kimchii IMSNU 11154]
          Length = 370

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/324 (14%), Positives = 109/324 (33%), Gaps = 14/324 (4%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKK---EESSTFLAVIATVSVMC-LFIVPLLFL 81
           F+   F P+L A  + +   PI       K    +     AVI T      +    ++ L
Sbjct: 40  FISTVFVPLLVAGFLYYVLKPILKLVQKIKIHGWQIPRQAAVILTFLFFLSVIAGVIVVL 99

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E+  L++ +    Q                  +  W ++L+   ++  + +   
Sbjct: 100 VPTLVREITNLITALPGFAQDMQRFTT--------ETINSKWFENLNLSINVNQVRDAVG 151

Query: 142 KTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
           K     +                  ++++ + + LF+   DG  +   +  +        
Sbjct: 152 KYAASFLTITAGTLGSIVSTVTSVTINLVTIPVVLFYMLSDGERLVPAIKKMFPERHADK 211

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             +++  +   I     G  I  +  G+ +   Y++ G P    L VI  I  ++P   P
Sbjct: 212 ITELTTKMDNTIERYISGQAIEMLFVGVTMAIGYFIIGQPYAWLLAVIAGITNIVPYIGP 271

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                 ++ +    +      + +   +   +    + P ++G  + +  L     L+  
Sbjct: 272 WIGVIPALLVASTQSWEQCLFVLIVMTVVQQLDGNFIYPNVIGKSLAIHPLTIMILLMVA 331

Query: 320 VRTMGLLGLFIGPVLMALIAVIWK 343
               G++G+ +   + A+  VI K
Sbjct: 332 GNLWGIVGMILVVPVYAVFRVIIK 355


>gi|229093461|ref|ZP_04224564.1| hypothetical protein bcere0021_41850 [Bacillus cereus Rock3-42]
 gi|228689932|gb|EEL43736.1| hypothetical protein bcere0021_41850 [Bacillus cereus Rock3-42]
          Length = 361

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/311 (15%), Positives = 110/311 (35%), Gaps = 11/311 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L A  I +   P+      +            T++++ ++I+    + Y       
Sbjct: 49  ITPFLIACFIAYLLHPLIEKIHKEGMPR--------TLAILLIYILFFGGIGYGIYKGTP 100

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            ++ ++   N+      +       G+      T +       K+          I  + 
Sbjct: 101 IVIKQLQEINEQFPQFTKMYDSWMDGVTEQ---TANFPSFIHEKVKQIFVGVETKIQALL 157

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     LD  L I  +   +F+  +D          L    + +  + +++ + K 
Sbjct: 158 NKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQMLAKEIDKS 217

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI     ++ + 
Sbjct: 218 LGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGAIPALMIA 277

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +        +  AI  F+    L P++VG  +++  +     L+ G    G++GL I
Sbjct: 278 ATVSTSLLIKAGVTIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEVAGIVGLLI 337

Query: 331 GPVLMALIAVI 341
              ++A+I  +
Sbjct: 338 SVPVLAVIRTV 348


>gi|229105024|ref|ZP_04235678.1| hypothetical protein bcere0019_41600 [Bacillus cereus Rock3-28]
 gi|228678401|gb|EEL32624.1| hypothetical protein bcere0019_41600 [Bacillus cereus Rock3-28]
          Length = 361

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 50/311 (16%), Positives = 112/311 (36%), Gaps = 11/311 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L A  I +   P+      +            T++++ ++I+    + Y       
Sbjct: 49  ITPFLIACFIAYLLHPLIEKIHKEGMPR--------TLAILLIYILFFGGIGYGIYKGTP 100

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            ++ ++   N+      +       G+           H +  +I     +K   I  + 
Sbjct: 101 VVIKQLQEINEQFPQFTKMYDSWMDGVTEQTANFPSFIHEKVKQIFVGVEMK---IQTLL 157

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     LD  L I  +   +F+  +D          L    + +  + +++ + K 
Sbjct: 158 NKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQMLAKEIDKS 217

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI     ++ + 
Sbjct: 218 LGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGAIPTLMIA 277

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +        +  AI  F+    L P++VG  +++  +     L+ G    G++GL I
Sbjct: 278 ATVSTSLLIKAGITIAILQFLESNILSPYIVGKSLRMHPVIIMLALLVGGEVAGIVGLLI 337

Query: 331 GPVLMALIAVI 341
              ++A+I  +
Sbjct: 338 SVPILAVIRTV 348


>gi|319650575|ref|ZP_08004715.1| hypothetical protein HMPREF1013_01320 [Bacillus sp. 2_A_57_CT2]
 gi|317397756|gb|EFV78454.1| hypothetical protein HMPREF1013_01320 [Bacillus sp. 2_A_57_CT2]
          Length = 366

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 47/323 (14%), Positives = 116/323 (35%), Gaps = 5/323 (1%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P++ +  + F   P+    + + +   T   +I   +V+ L ++ +  +      ++ 
Sbjct: 41  FFPIIISGFLYFLLNPL-VRLLQRYKVPRTAAILIIYAAVIGLVMLIIGNIAPLISRQVT 99

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           EL + +    +        +S      W  E     +   ++  +     L +     + 
Sbjct: 100 ELFNDLPGYAKTTRDFVNSMSSTEEFKWFLEQDYISIEEIEARIMEYANTLPSRVTQGVA 159

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              S    +  +  ++I+ +   LF+ ++DG      +       +     K  +   + 
Sbjct: 160 GIVS----LVTNIAITIVTVPFLLFYMFKDGDKFPAAVSKFLPASYREEGVKTLKETGET 215

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G   +A+  G +    Y +  +P  + + +I AI  +IP   P    A ++ + 
Sbjct: 216 LSSYIQGQITVALFVGTLSFIGYLIIDLPYALVMALIVAITNIIPYVGPFLGGAPAVIVA 275

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +  +   A  + +   I   I    L P ++G  +          L+      G+LG+ +
Sbjct: 276 LFDSPTKAFLVVVVIVIAQQIEGNVLSPLILGKTLNTHPATIIILLLVAGNLAGILGMIL 335

Query: 331 GPVLMALIAVIWKESIMAIKENK 353
                A+   I   ++  ++  K
Sbjct: 336 AIPTYAVTKTIVLNTVRFLRARK 358


>gi|225572141|ref|ZP_03781005.1| hypothetical protein RUMHYD_00435 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040407|gb|EEG50653.1| hypothetical protein RUMHYD_00435 [Blautia hydrogenotrophica DSM
           10507]
          Length = 451

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 55/371 (14%), Positives = 114/371 (30%), Gaps = 32/371 (8%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES--------------- 58
              M +++  +        P+L    I +   PI +    K                   
Sbjct: 30  IFQMGVLIRGISIFLHILMPILYGAAIAYLICPITNFLERKVFFRFLEHRHFHLSKRIKS 89

Query: 59  --STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
                  +++ V + C+    L+ L    +  +  ++          +   +W++D+  G
Sbjct: 90  VVRYVSILLSLVFMCCIIYSLLMMLLPELIRSIVNIIYNFPSYI---LSAQKWINDVLEG 146

Query: 117 -MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC---LSIIFMII 172
                  + + LS      +  E +L  N +  +      F     D      +++   I
Sbjct: 147 NSQLHSFFQEFLSQY---SVKIEAYLTGNILPKLQETLQNFSEGVFDMLNVLKNLLIGAI 203

Query: 173 ALFFFYRDGFSISQ----QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLV 228
              +   D           L S           +  R   K       G  + ++  G++
Sbjct: 204 VSVYILADKEGFVAKSKMWLYSFLSPERANVVIRSMRFTHKTFGGFINGKLLDSLIIGIL 263

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
                 L G P    + V+  +  +IP   P      S  L++  +        ++    
Sbjct: 264 CYIGTNLIGTPYATLISVVVGVTNVIPFFGPYLGAIPSAILILLVDPIQCIYFVIFVFAL 323

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIM 347
                  L P ++G    L        ++ G    G+ G+F+G PV   L A+ WK    
Sbjct: 324 QQFDGNILGPKILGESTGLSSFMVILAILMGGGLFGIFGMFVGVPVCAVLYAMTWKIIRR 383

Query: 348 AIKENKEKISS 358
           ++K+ K    +
Sbjct: 384 SLKKRKLPTDA 394


>gi|239917041|ref|YP_002956599.1| predicted permease [Micrococcus luteus NCTC 2665]
 gi|281414496|ref|ZP_06246238.1| predicted permease [Micrococcus luteus NCTC 2665]
 gi|239838248|gb|ACS30045.1| predicted permease [Micrococcus luteus NCTC 2665]
          Length = 405

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 77/210 (36%), Gaps = 1/210 (0%)

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
             A  FG   ++    +   + +L FF  DG  I + L         A   +  R   + 
Sbjct: 155 NSAVSFGSTAVNIGAGLFIALFSLIFFLYDGDRIWRFLLIFVPKAHRATVGRAGRSGWQS 214

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL- 269
           + S       +A  + + +G    + GVP  + L V+  + + IP         +++ L 
Sbjct: 215 LGSYVRVQIFVAFIDAVGIGLGALILGVPLAIPLAVLVFLASFIPMIGATLTGGMAVLLA 274

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           L+   + NA  +     +   I    L+P ++G  + L  L  F  +  G   +GL G  
Sbjct: 275 LMSNGLVNALLMLGVVLLVQQIESNVLQPLVMGKAVALHPLAVFLAVAAGSTVLGLAGAV 334

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISSN 359
               ++A +    +       E   + + +
Sbjct: 335 FAVPVLAFVNSFVRALTADTPEELTERTDH 364


>gi|229062085|ref|ZP_04199410.1| hypothetical protein bcere0026_41570 [Bacillus cereus AH603]
 gi|228717237|gb|EEL68912.1| hypothetical protein bcere0026_41570 [Bacillus cereus AH603]
          Length = 361

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/318 (16%), Positives = 116/318 (36%), Gaps = 11/318 (3%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           ++  K    P L A  I +   P+      +            T++++ ++I+    + Y
Sbjct: 42  IFVFKVAITPFLIACFIAYLLHPLIEKIHKEGMPR--------TLAILLIYILFFGGIGY 93

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                   ++ ++   N+      +       G+           H +  +I     +K 
Sbjct: 94  GIYKGTPVVIKQLQEINEQFPQFTKMYDSWMDGVTEQTANFPSFIHEKVKQIFVGVEMK- 152

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             I  +           LD  L I  +   +F+  +D          L    + +  + +
Sbjct: 153 --IQTLLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQML 210

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
           ++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI   
Sbjct: 211 AKEIDKSLGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGA 270

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++ +    +        +  AI  F+    L P++VG  +++  +   F L+ G    
Sbjct: 271 IPTLMIAATVSTSLLIKAGIMIAILQFLESNILSPYIVGKSLRMHPVIIMFALLVGGEVA 330

Query: 324 GLLGLFIGPVLMALIAVI 341
           G++GL I   ++A+I  +
Sbjct: 331 GIVGLLISVPILAVIRTV 348


>gi|313126137|ref|YP_004036407.1| permease [Halogeometricum borinquense DSM 11551]
 gi|312292502|gb|ADQ66962.1| predicted permease [Halogeometricum borinquense DSM 11551]
          Length = 418

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 55/343 (16%), Positives = 117/343 (34%), Gaps = 32/343 (9%)

Query: 14  WMIMFIILVSL-YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           W I  ++  +L Y    F    +  + I +++ PIY     +     +  A +A  ++  
Sbjct: 14  WAIGLVLAAALAYVFYSFVGTFVFGIFIYYSTRPIYRRIKRRVRP-PSLAAAVALFALAL 72

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
             +  + +     + E+  L +               L+ +        L    L+  + 
Sbjct: 73  PALALIAYALAIVVNELVRLTNNGFFDLSRYPITSDQLARLTDPNTILSLELSSLTESEL 132

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
            +ILS      + + F+               + +  MI   F+  RD    ++ +    
Sbjct: 133 SQILSSIGSAADTLAFLGVGG-----------VHLFVMIALAFYLLRDDHRFARWVRMNF 181

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--------VPSHVAL 244
                   +     V +  ++ F G  + A+  G +   AY +          +P+   +
Sbjct: 182 ADDRGV-MEAYCTAVDRDFKNIFFGNILNAVLTGTIGVIAYTVLNMVGPDGVYIPAAALV 240

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIEL-FIVDKTL 296
           G++  + ++IP  G  + +  V+IYL         G  +          + +  I D  L
Sbjct: 241 GLLAGVASLIPVVGMKLVYIPVAIYLAGVSYFSNPGAFWFVIAFIAVSFVIVDTIPDLVL 300

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
           RP++ G    L           G    G  G+F  P+++ L+ 
Sbjct: 301 RPYVSGR--TLHVGAVMIAYTFGPLLFGWYGIFFAPMILVLVV 341


>gi|312862680|ref|ZP_07722920.1| putative membrane protein [Streptococcus vestibularis F0396]
 gi|311101540|gb|EFQ59743.1| putative membrane protein [Streptococcus vestibularis F0396]
          Length = 392

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 55/360 (15%), Positives = 128/360 (35%), Gaps = 19/360 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYF----------LKGFFAPVLSALIIGFTSWPI---YSSF 51
           +LN Q +M ++I+ +I +++            +  F   ++  L+I    + +       
Sbjct: 18  ILNNQVVMAFLILLLIGLTVLIFTKISPIFSPVIQFLTIIMLPLVISMLLYYLIKPLVLL 77

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS 111
           + K   + T   ++    +  L +  +         ++  L+                  
Sbjct: 78  VEKTGLNRTMSILLIYAILALLLVWGISTAIPNLQDQILILIRNAPSYIARANSETERWL 137

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
            +P            LS   +  +       T+ + +I  FAS    +     ++II   
Sbjct: 138 KLPILSNFHGDLEAVLSDFSARMVNYAEHFSTSALTWIGTFASTVARVT----VAIILTP 193

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
             LF+  RD   +     S     F     ++   +   +     G   +AI   ++   
Sbjct: 194 FILFYLLRDSQKMKHSFVSALPTRFRKTTVRMLSDINSQLEGYVQGQVTVAIVVAIMFCI 253

Query: 232 AYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
            + + G+   +  G++   + MIP  G+ ++   V I  L++G       + +   IE  
Sbjct: 254 MFKIVGLRYGMTFGILAGFLNMIPYLGSFLAMVPVVIMGLVQG-PAMLIKVLIIFVIEQT 312

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           I  + + P ++G  + +  +   F L+      G+ G+ +G  + A + V+ +E     +
Sbjct: 313 IEGRFVSPLVLGNKLSIHPITIMFILLTAGSLYGVWGVLLGIPIYASVKVVVREIFDWYR 372


>gi|290957036|ref|YP_003488218.1| integral membrane protein [Streptomyces scabiei 87.22]
 gi|260646562|emb|CBG69659.1| putative integral membrane protein [Streptomyces scabiei 87.22]
          Length = 374

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 56/342 (16%), Positives = 117/342 (34%), Gaps = 28/342 (8%)

Query: 10  GIMRWMIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +  ++  ++ V ++    F     P+L AL+      P Y   ++    + +  A + 
Sbjct: 29  SALTLLVTGVVYVGVWICVTFQTTVTPILIALLGTALLGPFYRRLVA-MRFNKSLAAGLT 87

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
             +V+ +       +    +    +++S +  A                    S+ +   
Sbjct: 88  CAAVVVVMGGAAYIVVAALIDTGDQIISSLRQA----------------AKSLSDEFGLA 131

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            +    L   ++  L   G        +       ++  + +  ++ +FFF RD      
Sbjct: 132 GTSLDDLAQNAKELLSKFGGTAASGVLTGV-SAVSEFLAAAVLAMLLMFFFLRDSDRAVA 190

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L SL         + ++R   + I     G T+IA  +G+ +     +  VP  V LG 
Sbjct: 191 SLHSLAPRGSGDTLEVMARRAFRAIEGYMRGTTLIAFIDGVCIAVGLLILQVPGAVGLGA 250

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD----KTLRPFLVG 302
           +  + A IP        AV+I +             LW    +F V       L+P +  
Sbjct: 251 LVFVGAYIPYLGAFLSGAVAILVAFAD---RGLVTALWAVGVVFAVQLLEGNVLQPMIHS 307

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             +++        L  G    G+LG+ +   L A ++ +  E
Sbjct: 308 RTVQMHPAAILLALTAGASLAGILGMLLAVPLTAAVSGVLSE 349


>gi|313125203|ref|YP_004035467.1| permease [Halogeometricum borinquense DSM 11551]
 gi|312291568|gb|ADQ66028.1| predicted permease [Halogeometricum borinquense DSM 11551]
          Length = 396

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 130/363 (35%), Gaps = 27/363 (7%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKG-FFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           + ++    + W++   I V L F+   F    +  L + + + P+YS    +  +  +  
Sbjct: 7   STIDRSRAIWWVLGVAIFVVLAFVADAFLGTFMLGLFLYYATRPVYSRIRGRIGQ-PSIG 65

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A +A + +    ++ + +     + E+   V +          +  +L         SEL
Sbjct: 66  AAVALLVLSLPVVLLVNYTVLIAVQELSAFVGQNQQGI--LAALKPYLGSFESLQAPSEL 123

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               L +P  L  +++T      +  I   AS          ++  F     F+  RD  
Sbjct: 124 LATLLENPSELVDMTDTATVEAVLSSIAGTASFILDAAFQLFIAFAFA----FYLLRDDR 179

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG----- 237
            +S                     V + +R+ + G  + A    ++   +Y         
Sbjct: 180 RLSAWTRENLSGHGGV-MDAYMTAVDRDLRTIYFGNILNAFAIAVIAAVSYNAINLFAPP 238

Query: 238 ---VPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNI------FNATCLFLWGAI 287
              +PS   LG +T   ++IP  G  I +  V++ L ++  +      + A        +
Sbjct: 239 SLWIPSPTLLGALTGAASLIPVVGMKIVYVPVTVLLAVEAALTAPDAFWVALAYGAVSLV 298

Query: 288 EL-FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            +  I D  LRP++ G    L      F  + G    G  GLF+GP+L+ +     +  +
Sbjct: 299 VVDTIPDFLLRPYVSGR--NLHTGTVMFAYIIGPALFGWYGLFLGPLLLVIAVHFVRIVL 356

Query: 347 MAI 349
             +
Sbjct: 357 PEL 359


>gi|323142306|ref|ZP_08077138.1| hypothetical protein HMPREF9443_01937 [Phascolarctobacterium sp.
           YIT 12067]
 gi|322413190|gb|EFY04077.1| hypothetical protein HMPREF9443_01937 [Phascolarctobacterium sp.
           YIT 12067]
          Length = 356

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/350 (14%), Positives = 129/350 (36%), Gaps = 6/350 (1%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
             +      +  ++  I   LY + GF  P+L A+ + F  +P+ ++    +      + 
Sbjct: 6   PQIRKSTFFKLGVVTAISYVLYLMAGFLLPLLLAVGLAFALYPLVNAIAQVRMAH-GMIK 64

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           +   V+++   +   +F+F      +  L  ++    Q  +P     S++       +  
Sbjct: 65  LSRVVAIILALMAFCIFIFMIIGFIILPLFGQMNEFLQK-LPALAVKSNLQDLDSMLKDP 123

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGM---IFLDYCLSIIFMIIALFFFYRD 180
           +     P    +L    L    + F+              +   + +I +    F+F +D
Sbjct: 124 STIPLLPSDFNMLVNGLL-NWAMGFVGTVLRNLVQSSLGIVQSLIGLIIVPFLAFYFLKD 182

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   + +L  +       ++   + + + +   GM  +++  G V+       G+  
Sbjct: 183 WRELRLMVINLFNYDAQEKAAEVVDEIGRTMSAYVRGMGKLSLISGFVITIGTAFLGIDF 242

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + LG    +   +P   P+     ++++        A  + L+  +   +    + P L
Sbjct: 243 PLVLGFWAILAETVPVVGPLMGAVPAVFIAYGQAPEAAFHVALFYLVYYQLDANFIMPKL 302

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +G  I L  +     L+ G +  G+LG+     + A+  V++K+   A +
Sbjct: 303 MGQKIDLHPVVLIISLLIGAKLFGILGMVFAVPVAAVYRVLYKQLWHAGE 352


>gi|307706792|ref|ZP_07643597.1| conserved hypothetical protein [Streptococcus mitis SK321]
 gi|307617877|gb|EFN97039.1| conserved hypothetical protein [Streptococcus mitis SK321]
          Length = 388

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 114/335 (34%), Gaps = 5/335 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    L FL     PV+ + ++ +   PI       K         I  V +    I
Sbjct: 42  ISFLFSPVLDFLAVVMLPVILSGLLYYLLNPIVDWMEKHKINR-VIAISIVFVIIALFII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      V +  +    V   L              + L++  S   
Sbjct: 101 WGLAVAIPNLQRQVLSFARNVPVYLEDADRVIDDLVTKRLPDDFRPQLEQVLTNFSSQAT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +  + + +  ++++  F S    +     +++I +   LF+  RDG  +   L       
Sbjct: 161 VWASKVSSQAVNWVSAFISGASQV----IVALIIVPFMLFYLLRDGKGLRHYLTQFMPTK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   V + + +   G   +AI   ++    + + G+   V LGV   I+ ++P
Sbjct: 217 LKEPVGQVLSDVNQQLSNYVRGQVTVAIIVAVMFMIFFKIIGLRYAVTLGVTAGILNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPVMLLKVVIVFIVEQTIEGRFVSPLILGSQLNIHPINVLFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+      G+ G+ +G  + A   V+        K
Sbjct: 337 LLTSGSMFGIWGVLLGIPVYASAKVVISAIFEWYK 371


>gi|291280377|ref|YP_003497212.1| transporter [Deferribacter desulfuricans SSM1]
 gi|290755079|dbj|BAI81456.1| transporter [Deferribacter desulfuricans SSM1]
          Length = 344

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 64/321 (19%), Positives = 128/321 (39%), Gaps = 15/321 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P   A  I +   P+     + K    T   +I  V    + I  +LF+F   + E+ 
Sbjct: 33  LTPFAIAFFISYLLDPVVDRLENLKFNR-TLSVLIVFVLFSLIVIAIILFIFPVMINEIN 91

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK--TNGIDF 148
            L+ K+          P +L  +   +     +     +   +K      L   +N +  
Sbjct: 92  ILLKKI----------PVYLQMLDNKIKEYNYYAIIQPYINEIKSFVVKNLGKISNILLD 141

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           I    S +   FL++ L    + I +F+F +D  SI  +  ++ E          S    
Sbjct: 142 IFNVLSGYLGNFLNFVLLYSIVPILIFYFLKDFDSIVAKTKTMLEKKGFLNVVDKSEEFN 201

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
            +++S F G  I+++  G++      + G+   V +GV++ I++M+P    I     S+ 
Sbjct: 202 SILKSYFRGQFIVSVLLGILYSVTLLIVGIEGAVFVGVLSGILSMVPYLGFIVGFVTSLL 261

Query: 269 LLIK--GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           L      ++F+   + L   I   I    + P +VG  + L  +   F ++ G    G+ 
Sbjct: 262 LAFIQFQDLFHPLFVVLGFTIVQVIESNLITPKIVGESLGLHPVAVIFAIMVGGSLFGIA 321

Query: 327 GLFIGPVLMALIAVIWKESIM 347
           G+     + ALI V + ++++
Sbjct: 322 GMIFSLPIAALIKVSFMDNLL 342


>gi|241666775|ref|YP_002984859.1| protein of unknown function UPF0118 [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862232|gb|ACS59897.1| protein of unknown function UPF0118 [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 662

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 54/341 (15%), Positives = 109/341 (31%), Gaps = 24/341 (7%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           P  +  +  +  ++  LYF K    P+  A+++ F   PI S    +K       AVI T
Sbjct: 30  PSRMPAFASVLAVIAILYFGKEVLLPLAIAVLLTFALAPISSRL--RKLGMPRIPAVIVT 87

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V +  L    L+         + E+   +     + I   R L +           T  +
Sbjct: 88  VVIAFLV---LVLFGLVVAGHVAEVAQNLPAYQGNIIAKIRSLQESGTDSGIVRRLTSVV 144

Query: 128 SHPQSLKILSETFLKTNGIDF----------------IPRFASRFGMIFLDYCLSIIFMI 171
                    +E      G                   I    S  G   L    S+  +I
Sbjct: 145 ESVGRELSNAEQRPGAPGTGSRPREPVLVEIFAPSRPIETLTSLIG-PLLGPIASLGLII 203

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
           + + F   +   +  +   L  +       +  +     +    L   ++    G+ L  
Sbjct: 204 VVVIFMLLEREELRDRFIRLVGYGDLHRTTEAIQEAGSRVAQYLLMQLVVNCAYGVPLAL 263

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-- 289
             W  G+P+    G++  ++  +P   P+  T + ++L    +   +  L++     +  
Sbjct: 264 GLWAVGIPNPALWGMLAIVLRFVPYIGPVIATVLPLFLAFAVDPGWSLVLWVGAIFLVLE 323

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +  + P+L G    L  L      +      G +GL +
Sbjct: 324 LTSNNVIEPWLYGSRTGLSPLAIIVAAIFWAWLWGPVGLVL 364


>gi|228917024|ref|ZP_04080584.1| hypothetical protein bthur0012_42360 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228929435|ref|ZP_04092456.1| hypothetical protein bthur0010_41200 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228935711|ref|ZP_04098524.1| hypothetical protein bthur0009_41560 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228948104|ref|ZP_04110388.1| hypothetical protein bthur0007_42300 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229123931|ref|ZP_04253123.1| hypothetical protein bcere0016_42160 [Bacillus cereus 95/8201]
 gi|228659233|gb|EEL14881.1| hypothetical protein bcere0016_42160 [Bacillus cereus 95/8201]
 gi|228811462|gb|EEM57799.1| hypothetical protein bthur0007_42300 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228823949|gb|EEM69768.1| hypothetical protein bthur0009_41560 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228830223|gb|EEM75839.1| hypothetical protein bthur0010_41200 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228842631|gb|EEM87719.1| hypothetical protein bthur0012_42360 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 361

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/311 (15%), Positives = 110/311 (35%), Gaps = 11/311 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L A  I +   P+      +            T++++ ++I+    + Y       
Sbjct: 49  ITPFLIACFIAYLLHPLIEKIHKEGMPR--------TLAILLIYILFFGGIGYGIYKGTP 100

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            ++ ++   N+      +       G+      T +       K+          I  + 
Sbjct: 101 IVIKQLQEINEQFPQFTKMYDSWMDGVTEQ---TANFPSFIHEKVKQIFVGVETKIQALL 157

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     LD  L I  +   +F+  +D          L    + +  + +++ + K 
Sbjct: 158 NKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQMLAKEIDKS 217

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI     ++ + 
Sbjct: 218 LGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGAIPALMIA 277

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +        +  AI  F+    L P++VG  +++  +     L+ G    G++GL I
Sbjct: 278 ATVSTSLLIKAGITIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEVAGIVGLLI 337

Query: 331 GPVLMALIAVI 341
              ++A+I  +
Sbjct: 338 SVPVLAVIRTV 348


>gi|306825324|ref|ZP_07458666.1| membrane protein [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432760|gb|EFM35734.1| membrane protein [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 388

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 56/336 (16%), Positives = 116/336 (34%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI L  L FL     PV+ + ++ +   PI       K         I  V +    I
Sbjct: 42  ISFIFLPVLDFLGVVMLPVILSGLLYYLLNPIVDWMEKHKINR-VLAISIVFVIIGLFII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      V    +    V   L              + LS+  S   
Sbjct: 101 WGLAVAIPNLQRQVLTFAKNVPTYLEDADRVINDLVTKRLPDDFRPQLEQVLSNVSSEAT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           L  + + +  ++++  F S    +     +++I +   LF+  RDG  +   L     + 
Sbjct: 161 LWASKISSQAVNWVSAFISSVSQV----IVAVIIVPFMLFYLLRDGKGLRDYLTKFIPNK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   V K + +   G   +AI   ++    + + G+   V LG+   I+ ++P
Sbjct: 217 LKEPVGQVLSDVNKQLSNYVRGQVTVAIIVAIMFIIFFKIIGLRYAVTLGITAGILNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPVMLLKVIIVFIVEQTIEGRFVSPLILGSQLNIHPINVLFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      G+ G+ +G  + A   V+        K+
Sbjct: 337 LLTSGSMFGIWGVLLGIPVYASAKVVISAIFNWYKK 372


>gi|325274454|ref|ZP_08140534.1| hypothetical protein G1E_14686 [Pseudomonas sp. TJI-51]
 gi|324100408|gb|EGB98174.1| hypothetical protein G1E_14686 [Pseudomonas sp. TJI-51]
          Length = 340

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 124/335 (37%), Gaps = 14/335 (4%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           LY L     P L  +++ + + P+      +    +          V+ +F +  L    
Sbjct: 3   LYSLHNILTPFLIGILLAYLADPLVDWLERRGLSRTW--------GVVVVFALFTLLFMA 54

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLKILSETFL 141
             ++ +  L  ++V   +    +  WL    +P       L        +    +SE   
Sbjct: 55  LLLVLVPMLAKQLVRLYELAPQMLDWLQHVALPWVQQRLGLADGFWKFDKIKSAISEHMG 114

Query: 142 KT-NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           +T + +  +   A+   +  + +  +++ + +  F+  RD   +  +L SL         
Sbjct: 115 QTTDIVGVVLSQATASSLALIAWLANMVMIPVVGFYLLRDWDLMMAKLRSLLPRQQEPQI 174

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             ++    +V+ +   G  ++ +  G++      L G+   + +G++  + A++P    I
Sbjct: 175 VGLAGECHEVLGAFVRGQLLVMVALGIIYSVGLMLVGLELGLLIGMLAGLAAIVPYMGFI 234

Query: 261 SFTAVSI---YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
                ++        G+++    +     I   +    L P LVG  I L  +   F ++
Sbjct: 235 IGIGAALVAGLFQFGGDLYPMLGIVAVFVIGQALEGMVLTPLLVGDRIGLHPVAVIFAIL 294

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            G    G  G+ +   + A+I V+ +      KE+
Sbjct: 295 AGGELFGFTGVLLALPVAAVIMVLLRHVHDLYKES 329


>gi|30248120|ref|NP_840190.1| hypothetical protein NE0089 [Nitrosomonas europaea ATCC 19718]
 gi|30180005|emb|CAD84000.1| Domain of unknown function DUF20 [Nitrosomonas europaea ATCC 19718]
          Length = 352

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 56/318 (17%), Positives = 124/318 (38%), Gaps = 10/318 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           ++ ++   +Y L     P L A +I +   P+ +   ++K    T   +   +  M +FI
Sbjct: 17  VIGVVSALIYLLSPILTPFLLAAVIAYICNPLVTWLEARKIPR-TLSTIFVMLMTMGIFI 75

Query: 76  VPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
              L LF     E+  LV ++    +        WL D       +      ++  + + 
Sbjct: 76  AMALILFPLFEKEVSRLVERIPSFLDLVKSQFIPWLED-----NFNVELQIDIASLKQML 130

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                         +P   S  G+I L + ++++ + + LF+  RD  ++ +Q+  L   
Sbjct: 131 TEHWKSAGGVAAQMLPSLKSG-GLILLTFLMNLVLVPVVLFYLLRDWNNLIRQVGELIPP 189

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           ++      ++R    V+     G T +     +   +  WL  +   + +G+I+ I+  +
Sbjct: 190 VWQKQIFTLARETDDVLAEFMRGETAVITIMSIYYVTGLWLVKLEFALPIGLISGILVFV 249

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF--IVDKTLRPFLVGGPIKLPFLPT 312
           P    I+  A++ +  I      +  + +W  +     +    + P LVG  I L  +  
Sbjct: 250 PYLGTITGLALATFAAITQFQEWSGVIAVWVVVGSGQLLESMLITPRLVGERIGLHPVAV 309

Query: 313 FFGLVGGVRTMGLLGLFI 330
            F L+   +  G +G+ +
Sbjct: 310 IFALLAFGQLFGFIGILL 327


>gi|294786614|ref|ZP_06751868.1| putative membrane protein [Parascardovia denticolens F0305]
 gi|315226201|ref|ZP_07867989.1| hypothetical integral membrane protein [Parascardovia denticolens
           DSM 10105]
 gi|294485447|gb|EFG33081.1| putative membrane protein [Parascardovia denticolens F0305]
 gi|315120333|gb|EFT83465.1| hypothetical integral membrane protein [Parascardovia denticolens
           DSM 10105]
          Length = 546

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/348 (13%), Positives = 111/348 (31%), Gaps = 20/348 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLS----ALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +G+   +I   + + ++      + V+     AL I     P+    +          A 
Sbjct: 42  RGLFYTVIAIFLGIFVWNSWPKISGVVFYVIVALFISLALEPLIIRLVKH-GWKRGAAAG 100

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  +  + + I          + +  +L++ +          P   +DI      S    
Sbjct: 101 VTIIGFVVVVIAFFSVFGIMLVQQATKLIATI----------PNTYNDI--RNSISSWTG 148

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L     L   +   L  +G  ++ +  S      +   ++I+ +++  ++    G  +
Sbjct: 149 YELPKMNDLSTSALRELSRHGQGYLGQLYSTV-SSVVSGLMAILTILLVAYYISAAGPKL 207

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + +           +  I   V   I +      I+AI  G  L     L  +P  + L
Sbjct: 208 RRSVCKWIPRRSQRKFIVIWTTVQGQISNYLYSRFILAILNGTFLALFMILLKIPYWLPL 267

Query: 245 GVITAIMA-MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            +   +++  IP  G  +      I          A  L ++  +   I +   +P +  
Sbjct: 268 AIWCGLVSQFIPTIGTYLGGVIPIISAWGTNGWQYAVYLLIYITVYQQIENMLFQPRVSK 327

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             + L     F  +       G LG F+   + A I  + +  + +  
Sbjct: 328 DTMDLNPAVAFLSVFFFGGLFGALGAFLALPITASIQALLQAYMRSYD 375


>gi|319653256|ref|ZP_08007358.1| hypothetical protein HMPREF1013_03973 [Bacillus sp. 2_A_57_CT2]
 gi|317395177|gb|EFV75913.1| hypothetical protein HMPREF1013_03973 [Bacillus sp. 2_A_57_CT2]
          Length = 361

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 55/355 (15%), Positives = 127/355 (35%), Gaps = 33/355 (9%)

Query: 10  GIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
            I   +I+F++    YFL          F PV+ + I+ +   P+         ++++  
Sbjct: 14  TIFVLIIIFLLGKIDYFLWPIRALVATIFFPVVISGILYYILRPLVRLVSRSLPKTAS-- 71

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                + V+   ++   +L +  +             N  G  V     ++P  M     
Sbjct: 72  -----IIVIFAVVLGAGYLGFNAI------------GNLIGSQVTELSENLPAKMEDLSD 114

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI-------IFMIIALF 175
            T+ +    ++ + S   +K   ++F+    S  G   +    +I       + +   LF
Sbjct: 115 ETEKVVEKNNMGMFSYDQVKNKALNFLETILSGAGENVMKVFSTITSIVTVMVVVPFILF 174

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           +F +D   +   L             KI   + K + S   G  I+A+ +G+++   Y +
Sbjct: 175 YFLKDDHKLRPFLLKYLPDKHEEEGNKILGDIDKTLFSYVTGQFIVAVVDGVLMYFGYKI 234

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
            G+   + L      + ++P   P+     +I++ +         + L       +    
Sbjct: 235 IGLEYALTLAFFAMFLTVVPFLGPVLGIIPAIFIGLLQGPGMVLKIILVLIAVQLLESNL 294

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           + P ++G  + L  L     L+      G +G+ I     +++ V+ K+     +
Sbjct: 295 VSPHVMGKRLNLHPLTVIIILMAAGSIYGFIGILIAIPFYSVVKVLVKDFRRFYR 349


>gi|229169133|ref|ZP_04296848.1| hypothetical protein bcere0007_40850 [Bacillus cereus AH621]
 gi|228614361|gb|EEK71471.1| hypothetical protein bcere0007_40850 [Bacillus cereus AH621]
          Length = 361

 Score = 90.3 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 114/318 (35%), Gaps = 11/318 (3%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           ++  K    P   A  I +   P+      +            T++++ ++I+    + Y
Sbjct: 42  IFVFKVAITPFFIACFIAYLLHPLIEKIHKEGMPR--------TLAILLIYILFFGGIGY 93

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                   ++ ++   N+      +       G+           H +  +I      K 
Sbjct: 94  GIYKGTPVVIKQLQEINEQFPQFTKMYDSWMDGVTEQTANFPSFIHEKVKQIFGGVETK- 152

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             I  +           LD  L I  +   +F+  +D          L    + +  + +
Sbjct: 153 --IQVLLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQML 210

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
           ++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI   
Sbjct: 211 AKEIDKSLGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGA 270

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++ +    +        +  AI  F+    L P++VG  +++  +   F L+ G    
Sbjct: 271 IPTLMIAATVSTSLLIKAGITIAILQFLESNILSPYIVGKSLRMHPVIIMFALLVGGEVA 330

Query: 324 GLLGLFIGPVLMALIAVI 341
           G++GL I   ++A+I  +
Sbjct: 331 GIVGLLISVPILAVIRTV 348


>gi|330953482|gb|EGH53742.1| permease [Pseudomonas syringae Cit 7]
          Length = 358

 Score = 90.3 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 52/344 (15%), Positives = 128/344 (37%), Gaps = 15/344 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +++  +  L     P L AL++ +   P+                   T+SV+ +F +
Sbjct: 13  LALLVAFVVLLHTILTPFLVALLLAYMGDPLVDRLERAGLSR--------TLSVVVVFGL 64

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLK 134
             L L    ++ +  L  ++    +    +  WL    +P       L        +   
Sbjct: 65  FTLVLMALLLVLVPMLAKQLFRLYELAPQILDWLQHSALPWVQAKFGLADGFWKFDKIKA 124

Query: 135 ILSETFLKT-NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            +SE   +  + +  +   A+   +  + +  +++ + +  F+  RD   ++ ++  L  
Sbjct: 125 AISEHMGQAGDIVSIVLSQATASSLALIGWLTNLVLIPVVCFYLLRDWDIMTGKIRGLLP 184

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   K++    +V+     G  ++ +G G++  +   L G+   + +GVI  + A+
Sbjct: 185 RQREGQIVKLAGECHEVLGGFIRGQLLVMVGLGVIYAAGLMLVGLELGLLIGVIAGLAAI 244

Query: 254 IPGGAPISFTA----VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +P    +          ++            + ++  I   +    L P LVG  I L  
Sbjct: 245 VPYMGFVIGIGSALVAGLFQFGGDLYPMMGIVAVFFMIGQALEGMVLTPLLVGDRIGLHP 304

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +   F ++ G    G  G+ +   + A+I V+ +      K+++
Sbjct: 305 VAVIFAILAGGELFGFTGILLALPVAAVIMVLVRHMHDLYKDSE 348


>gi|296115151|ref|ZP_06833792.1| hypothetical protein GXY_05201 [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978252|gb|EFG84989.1| hypothetical protein GXY_05201 [Gluconacetobacter hansenii ATCC
           23769]
          Length = 387

 Score = 90.3 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 47/340 (13%), Positives = 112/340 (32%), Gaps = 10/340 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            + + +++VS++ +      + +A ++      +      +      ++A+     V+ +
Sbjct: 56  ALTVTVLVVSIWLVGDVLMVLFAATLVAVILHNLAGHLERRTRL-PYWVAL---SIVVLI 111

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            I  L  L +    E+ E   ++  A             +   M  S      L +  S 
Sbjct: 112 IISALTALIWSSGPEISEQALRLRAALSEQA------RTLRDRMDDSTPGRMILDNLPSS 165

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
              +E     +G   I    + F         ++  ++IA  +F          +  L  
Sbjct: 166 FGGNEHSSGGSGFGSIAGSMTGFVTSAFGAAGTLAVILIAGLYFAISPEIYVNGMLRLVP 225

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
             +    + +     + + +   G  +     GL+     W+ GVP  +ALGV+  +   
Sbjct: 226 REYRMRTRDLLLTAGQTLWAWTAGQALDMTVVGLLSFIGLWIIGVPLALALGVVAGLANF 285

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP          ++ + +         +    A   F     + P +    +K+P   T 
Sbjct: 286 IPYIGAFVGAVPAVLIGLSQGTREGLTVLGLYAAIQFFEGNVMAPLIQRHAVKMPPGLTI 345

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                    +G+ GL +   L A +  +   +   + +++
Sbjct: 346 LSQTIFGTILGIPGLILASPLTAALLAMMDRATPQLSDDE 385


>gi|194017074|ref|ZP_03055686.1| membrane protein YrrI [Bacillus pumilus ATCC 7061]
 gi|194010942|gb|EDW20512.1| membrane protein YrrI [Bacillus pumilus ATCC 7061]
          Length = 354

 Score = 90.3 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 52/325 (16%), Positives = 118/325 (36%), Gaps = 13/325 (4%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
              LK    P+L A+ I +  +PI     +             TVS++ ++++    +  
Sbjct: 36  FLLLKAVLIPLLIAIFISYLLYPIVEKLHAGGLPR--------TVSLLLIYVLFFGGIGL 87

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSD-IPGGMWASELWTKHLSHPQSLKILSETFLK 142
                   ++ ++   ++    +    +  +      +  W   L       I+      
Sbjct: 88  AVYKGAPVMIKQLNELSEQIPVLAETYNGALSHIHHHTSHWPDGLHDRLDRLIVQSETYA 147

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            NG + +         + LDY L    +   +F+  +D  ++ +    L    F      
Sbjct: 148 ANGAERMILSC----KVLLDYALVAALIPFLVFYMVKDMNTMKRVAWYLTPPSFRKRGHA 203

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             + V + + +   G  ++    G       WL  +P  + LG++     +IP   PI  
Sbjct: 204 FVKAVDESLGNYIRGQLLVCSLIGGAAAIVLWLFHIPYPLVLGMLIGATNVIPYFGPIIG 263

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++++    ++ +   + +  A+  F+    L P +VG  + +  +     L+ G   
Sbjct: 264 AVPAVFIAFTISVKSVIIVLITVAVLQFLESNVLSPIIVGRSLHMHPVVIMLVLLAGGEL 323

Query: 323 MGLLGLFIGPVLMALIAVIWKESIM 347
            GL+G+ +     A+I VI  + I+
Sbjct: 324 FGLIGMILAVPTAAIIRVIIVQYIL 348


>gi|225854947|ref|YP_002736459.1| transport protein [Streptococcus pneumoniae JJA]
 gi|225722535|gb|ACO18388.1| transport protein [Streptococcus pneumoniae JJA]
          Length = 388

 Score = 90.3 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 55/338 (16%), Positives = 120/338 (35%), Gaps = 11/338 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    L FL     PV+ + ++ +   PI       K            +++  +F+
Sbjct: 42  ISFLFSPVLDFLAVVMLPVILSGLLYYLLNPIVDWMEKHKVNR--------VIAITIVFV 93

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL---WTKHLSHPQS 132
           +  LF+ +   + +  L  +V+   ++       +  I  G+ A  L   +   L    +
Sbjct: 94  IIALFIIWGLAVAIPNLQRQVLTFARNVPVYLEDIDRIVNGLVAQHLPDDFRPQLEQVLT 153

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                 T L +        + S F        +++I +   LF+  RDG  +   L    
Sbjct: 154 NFSSQATVLASKVSSQAVNWVSAFISGASQVIVALIIVPFMLFYLLRDGKGLRNYLTQFI 213

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                    ++   V + + +   G   +AI   ++    + + G+   V LGV   I+ 
Sbjct: 214 PRKLKEPVGQVLSDVNQQLSNYVRGQVTVAIIVAVIFIIFFKIIGLRYAVTLGVTAGILN 273

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++P          ++ L +         + +   +E  I  + + P ++G  + +  +  
Sbjct: 274 LVPYLGSFLAMLPALVLGLIAGPVMLLKVVIVFIVEQTIEGRFVSPLILGSQLNIHPINV 333

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            F L+      G+ G+ +G  + A   V+        K
Sbjct: 334 LFVLLTSGSMFGIWGVLLGIPVYASAKVVISAIFEWYK 371


>gi|260592635|ref|ZP_05858093.1| putative membrane protein [Prevotella veroralis F0319]
 gi|260535405|gb|EEX18022.1| putative membrane protein [Prevotella veroralis F0319]
          Length = 374

 Score = 90.3 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 52/364 (14%), Positives = 126/364 (34%), Gaps = 16/364 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKE- 56
           M +T+   + I   +    ++     +KG      P   A  + +  +PI      K   
Sbjct: 1   MDKTITFDKFIRWSLTALAVVAVFLVIKGLSSVLLPFFIAWFLAYLLYPIVKFVQYKLHV 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
            S     ++  + V+ +    L F+    + ++  L++                + I   
Sbjct: 61  PSRALSIIVTMIFVIAIIAGVLYFIVPPMIGQIDRLMTIANRYLHETAHTNNISAMIQQW 120

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
           +  ++   +            ++ +       +     +   I L    S I ++  +FF
Sbjct: 121 VSENQYQIERFLKSPDFTDAIKSVMPK-----LFSVIGQTASIVLSIIASFITLLY-MFF 174

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
              D   ++     +       +W+++ + V + + +   G  ++++  G++    + + 
Sbjct: 175 ILLDYEFLTSNWIRIFPKKARPFWRELEQDVERELNNYVRGQGLVSLCMGVLFCIGFTII 234

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI----KGNIFNATC--LFLWGAIELF 290
             P  + LG++  ++ +IP     +    +   L+     G  F           AI   
Sbjct: 235 DFPMAIGLGILIGVLNLIPYLHTFALIPTAFLALLKAADTGQNFWIIFGSALAVFAIVQA 294

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++D  + P ++G  + L        L      +G +GL I   L  LI   W+  +    
Sbjct: 295 LMDMVITPKIMGKAMGLNPAILLLSLSVWGALLGFIGLIIALPLTTLIIAYWQRYVTKEH 354

Query: 351 ENKE 354
           E++E
Sbjct: 355 EDEE 358


>gi|126728913|ref|ZP_01744728.1| hypothetical protein SSE37_08798 [Sagittula stellata E-37]
 gi|126710843|gb|EBA09894.1| hypothetical protein SSE37_08798 [Sagittula stellata E-37]
          Length = 385

 Score = 89.9 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 58/340 (17%), Positives = 112/340 (32%), Gaps = 14/340 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             I  V+L+FL     P +    I +   P+          S      + TV+ + +F+V
Sbjct: 16  AAIFAVTLWFLGNVLLPFVLGGAIAYCLDPVADRLERA-GLSRNASVGVITVAGVLIFVV 74

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             L +    + +   L              P+   D+   +                 + 
Sbjct: 75  LTLAIIPLLIGQATALFE----------TAPQLFRDLQAFLTEKFPNLMTEGGVVQQSLA 124

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           S           +   A       L+  +  + + +   +   D  ++  Q+D+L     
Sbjct: 125 SLGETIKTKGAAVAETALASVGSLLNVLMLFLIVPVVAVYMLIDWDNMVAQIDTLVPLDH 184

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               ++++R V  V+     GM  + +  G       W  G+   + +GV+   +  IP 
Sbjct: 185 RETVRELARSVDSVLAGFIRGMGSVMLILGTYYAVLLWAVGLQFGLVVGVVAGFLTFIPY 244

Query: 257 GAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
              I    ++I L +    G  +    ++       FI    + P LVG  + L  +   
Sbjct: 245 VGAIVGGGLAIGLALFQFWGEWWWIVAVWAIFQSGQFIEGNIVTPRLVGSSVGLHPVWLL 304

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             L       G +GL +   L A I VI +      +E+K
Sbjct: 305 LALSVFGALFGFIGLLVAVPLAAAIGVIVRFLGDRYRESK 344


>gi|281421273|ref|ZP_06252272.1| putative membrane protein [Prevotella copri DSM 18205]
 gi|281404808|gb|EFB35488.1| putative membrane protein [Prevotella copri DSM 18205]
          Length = 375

 Score = 89.9 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 50/350 (14%), Positives = 124/350 (35%), Gaps = 15/350 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIATVSVMC 72
            +I+  +L    +L     P   A    +  +P+     +K          +IA  + + 
Sbjct: 17  TLIVLAVLYMTNYLSSVLLPFFIAWFFAYLLYPVVKFIENKLHVRIRALSILIAMGTAIA 76

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           +    L  +    + +  +L   +              + I   + A++   +H    + 
Sbjct: 77  VIGGVLWLIIPPMIDQFDKLGEVLTRWLHQTTHTNNLTALIKDWLQANQEQIEHFLKSKD 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                +T +       +    S+   + +    S+I ++  +FF   D  +++     + 
Sbjct: 137 FSDAIKTTMPK-----VFSVVSQTATVLMSIVASMITLLY-MFFILLDYETLTANWVRIF 190

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                 +W  + + V + + +   G  ++A+  G++    + + G P  + LG++  IM 
Sbjct: 191 PKKNRPFWSALMKDVERELNNYIRGQGLVALCMGIMFCIGFTIIGFPMAIGLGILIGIMD 250

Query: 253 MIPGGAPISFTAVSIYLLI----KGNIFN---ATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++P     +    +   ++     G  F       + ++  +++ I D  + P ++G  +
Sbjct: 251 LVPYLHTFALIPTAFLAMLKAADTGQNFWLVFGLAVLVFCVVQV-ITDMVVTPKIMGKAM 309

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            L        L      +G LGL +   L  LI   W+  +   K    +
Sbjct: 310 GLNPAILLLSLSVWGALLGFLGLIVALPLTTLIIAYWQRYVTKEKPQYHE 359


>gi|2960002|emb|CAA76498.1| outer membrane protein [Campylobacter jejuni]
          Length = 364

 Score = 89.9 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 61/302 (20%), Positives = 119/302 (39%), Gaps = 22/302 (7%)

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVS-KVVLANQHGIPVPRWLSDIPGGMWAS 120
            ++++ +     F+ P+  L  +    +    +  +VL  Q    V  +   +P      
Sbjct: 72  SSLVSVLIYNFFFLEPIFSLKVHDSGNIITFTTMFIVLVTQTLDYVKNYQFTLPESFNFL 131

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E   K       L  +S+  L          +AS F      + + ++ + +  FF    
Sbjct: 132 EPKIKEFLASIDLNSISKQIL---------SYASSFTKSGAKFLIDMVLICVFYFFANLY 182

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +   L S+   +       +   V  V+      M I+AI +G + G      G   
Sbjct: 183 GTELVIYLKSIIP-IDKKELDDVLSEVGNVMAVVLYSMVIVAIFQGALFGLITIFYGYDG 241

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRP 298
            + +GVI A+ ++IP  G  + +  VS+Y     N+ +A  +F++  I + FI D  ++P
Sbjct: 242 -ILMGVIFAVSSLIPAIGGALIYMPVSLYEFASNNLNSALVIFIYSVIVISFIADTLIKP 300

Query: 299 F--------LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
                    LV  P K+  L  F  ++ G+ T G  G+ +GP ++       +  ++   
Sbjct: 301 LIIKWINKKLVKTPTKINELLIFLAMIAGISTFGFWGIILGPAILTFFVSTLRMYVILKD 360

Query: 351 EN 352
           +N
Sbjct: 361 KN 362


>gi|229013608|ref|ZP_04170739.1| hypothetical protein bmyco0001_40160 [Bacillus mycoides DSM 2048]
 gi|229135213|ref|ZP_04264012.1| hypothetical protein bcere0014_41150 [Bacillus cereus BDRD-ST196]
 gi|228648255|gb|EEL04291.1| hypothetical protein bcere0014_41150 [Bacillus cereus BDRD-ST196]
 gi|228747667|gb|EEL97539.1| hypothetical protein bmyco0001_40160 [Bacillus mycoides DSM 2048]
          Length = 361

 Score = 89.9 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 114/318 (35%), Gaps = 11/318 (3%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           ++  K    P   A  I +   P+      +            T++++ ++I+    + Y
Sbjct: 42  IFVFKVAITPFFIACFIAYLLHPLIEKIHKEGMPR--------TLAILLIYILFFGGIGY 93

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                   ++ ++   N+      +       G+           H +  +I      K 
Sbjct: 94  GIYKGTPVVIKQLQEINEQFPQFTKMYDSWMDGVTEQTANFPSFIHEKVKQIFGGVETK- 152

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             I  +           LD  L I  +   +F+  +D          L    + +  + +
Sbjct: 153 --IQALLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQML 210

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
           ++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI   
Sbjct: 211 AKEIDKSLGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGA 270

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++ +    +        +  AI  F+    L P++VG  +++  +   F L+ G    
Sbjct: 271 IPTLMIAATVSTSLLIKAGITIAILQFLESNILSPYIVGKSLRMHPVIIMFALLVGGEVA 330

Query: 324 GLLGLFIGPVLMALIAVI 341
           G++GL I   ++A+I  +
Sbjct: 331 GIVGLLISVPILAVIRTV 348


>gi|311068972|ref|YP_003973895.1| hypothetical protein BATR1942_10155 [Bacillus atrophaeus 1942]
 gi|310869489|gb|ADP32964.1| hypothetical protein BATR1942_10155 [Bacillus atrophaeus 1942]
          Length = 369

 Score = 89.9 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 49/328 (14%), Positives = 122/328 (37%), Gaps = 6/328 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I F+    + F +  F P++ + ++ +   P+     +K +       ++  ++   L
Sbjct: 29  TLIDFLFRPFIIFCQTLFGPIILSGVLYYLFRPLVKLLHTKAKLPKGIAILLIYLTAGGL 88

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           F + +         +    VS              W+  I    W S L  +   +  + 
Sbjct: 89  FTLFIYTAGPEIQKQFNSFVSNFPTLLDQAR---DWIETIQHNKWFSRLQEQSSLNQITD 145

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           K+ +      + I  +            +  ++I+ +   L++  ++G    + L     
Sbjct: 146 KVTN---YSNSFISSLGDNIKSMAGAVTNAVITIVIIPFVLYYMLKEGEKAPRYLLHFLP 202

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  K+I   + + + +   G  I++   G+++   Y++ G+   + LGV+  +  +
Sbjct: 203 KKQQKEGKRILEDMDQTLSAYIQGQIIVSCCVGVLVTIGYFIIGLDYPLMLGVVAMVTNV 262

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P   T   + + +  +   A  + +   I   I  + + P ++G  + +  L   
Sbjct: 263 IPFIGPWIGTFPGVVVGLFDSPTTAILVIVVVVIAQQIESQIISPQVMGRKLSIHPLTII 322

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           F L+      G++G+ +     A+  VI
Sbjct: 323 FLLLAVGNFAGIVGMLLAIPGYAVAKVI 350


>gi|229192602|ref|ZP_04319563.1| hypothetical protein bcere0002_42530 [Bacillus cereus ATCC 10876]
 gi|228590909|gb|EEK48767.1| hypothetical protein bcere0002_42530 [Bacillus cereus ATCC 10876]
          Length = 361

 Score = 89.9 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 112/318 (35%), Gaps = 11/318 (3%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           ++  K    P L A  I +   P+      +            T++++ ++I+    + Y
Sbjct: 42  IFVFKVAITPFLIACFIAYLLHPLIEKIHKEGMPR--------TLAILLIYILFFGGIGY 93

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                   ++ ++   N+      +       G+      T +       K+        
Sbjct: 94  GIYKGTPVVIKQLQEINEQFPQFTKMYDSWMDGVTEQ---TANFPSFIHEKVKQLFVGVE 150

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             I  +           LD  L I  +   +F+  +D          L    +    + +
Sbjct: 151 TKIQALLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRGTGQML 210

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
           ++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI   
Sbjct: 211 AKEIDKSLGSYIRGQLFVCLVLGGVSALSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGA 270

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G    
Sbjct: 271 IPTLMIAATVSTSLLIKAGITIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEVA 330

Query: 324 GLLGLFIGPVLMALIAVI 341
           G++GL I   ++A+I  +
Sbjct: 331 GIVGLLISVPILAVIRTV 348


>gi|229098862|ref|ZP_04229798.1| hypothetical protein bcere0020_40860 [Bacillus cereus Rock3-29]
 gi|229117887|ref|ZP_04247249.1| hypothetical protein bcere0017_41570 [Bacillus cereus Rock1-3]
 gi|228665544|gb|EEL21024.1| hypothetical protein bcere0017_41570 [Bacillus cereus Rock1-3]
 gi|228684535|gb|EEL38477.1| hypothetical protein bcere0020_40860 [Bacillus cereus Rock3-29]
          Length = 361

 Score = 89.9 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 50/311 (16%), Positives = 112/311 (36%), Gaps = 11/311 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L A  I +   P+      +            T++++ ++I+    + Y       
Sbjct: 49  ITPFLIACFIAYLLHPLIEKIHKEGMPR--------TLAILLIYILFFGGIGYGIYKGTP 100

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            ++ ++   N+      +       G+           H +  +I     +K   I  + 
Sbjct: 101 VVIKQLQEINEQFPQFTKMYDSWMDGVTEQTANFPSFIHEKVKQIFVGVEMK---IQTLL 157

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     LD  L I  +   +F+  +D          L    + +  + +++ + K 
Sbjct: 158 NKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQMLAKEIDKS 217

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI     ++ + 
Sbjct: 218 LGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGAIPTLMIA 277

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +        +  AI  F+    L P++VG  +++  +     L+ G    G++GL I
Sbjct: 278 ATVSTSLLIKAGITIAILQFLESNILSPYIVGKSLRMHPVIIMLALLVGGEIAGIVGLLI 337

Query: 331 GPVLMALIAVI 341
              ++A+I  +
Sbjct: 338 SVPILAVIRTV 348


>gi|118479551|ref|YP_896702.1| permease [Bacillus thuringiensis str. Al Hakam]
 gi|229186630|ref|ZP_04313791.1| hypothetical protein bcere0004_41730 [Bacillus cereus BGSC 6E1]
 gi|118418776|gb|ABK87195.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|228596889|gb|EEK54548.1| hypothetical protein bcere0004_41730 [Bacillus cereus BGSC 6E1]
          Length = 361

 Score = 89.9 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 113/318 (35%), Gaps = 11/318 (3%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           ++  K    P L A  I +   P+      +            T++++ ++I+    + Y
Sbjct: 42  IFVFKVAITPFLIACFIAYLLHPLIEKIHKEGMPR--------TLAILLIYILFFGGIGY 93

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                   ++ ++   N+      +       G+      T +       K+        
Sbjct: 94  GIYKGTPIVIKQLQEINEQFPQFTKMYDSWMDGVTEQ---TANFPSFIHEKVKQIFVGVE 150

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             I  +           LD  L I  +   +F+  +D          L    + +  + +
Sbjct: 151 TKIQALLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQML 210

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
           ++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI   
Sbjct: 211 AKEIDKSLGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGA 270

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G    
Sbjct: 271 IPALMIAATVSTSLLIKAGITIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEVA 330

Query: 324 GLLGLFIGPVLMALIAVI 341
           G++GL I   ++A+I  +
Sbjct: 331 GIVGLLISVPVLAVIRTV 348


>gi|228941558|ref|ZP_04104107.1| hypothetical protein bthur0008_41950 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974488|ref|ZP_04135055.1| hypothetical protein bthur0003_42410 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981082|ref|ZP_04141383.1| hypothetical protein bthur0002_42430 [Bacillus thuringiensis Bt407]
 gi|228778623|gb|EEM26889.1| hypothetical protein bthur0002_42430 [Bacillus thuringiensis Bt407]
 gi|228785205|gb|EEM33217.1| hypothetical protein bthur0003_42410 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818114|gb|EEM64190.1| hypothetical protein bthur0008_41950 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 361

 Score = 89.9 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 112/318 (35%), Gaps = 11/318 (3%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           ++  K    P L A  I +   P+      +            T++++ ++I+    + Y
Sbjct: 42  IFVFKVAITPFLIACFIAYLLHPLIEKIHKEGMPR--------TLAILLIYILFFGGIGY 93

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                   ++ ++   N+      R       G+      T +       K+        
Sbjct: 94  GIYKGTPVVIKQLQEINEQFPQFTRMYDSWMDGVTEQ---TANFPSFIHEKVKQLFVGVE 150

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             I  +           LD  L I  +   +F+  +D          L    +    + +
Sbjct: 151 TKIQALLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRGTGQML 210

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
           ++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI   
Sbjct: 211 AKEIDKSLGSYIRGQLFVCLVLGGVSALSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGA 270

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G    
Sbjct: 271 IPTLMIAATVSTSLLIKAGITIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEVA 330

Query: 324 GLLGLFIGPVLMALIAVI 341
           G++GL I   ++A+I  +
Sbjct: 331 GIVGLLISVPILAVIRTV 348


>gi|320104445|ref|YP_004180036.1| hypothetical protein Isop_2922 [Isosphaera pallida ATCC 43644]
 gi|319751727|gb|ADV63487.1| protein of unknown function UPF0118 [Isosphaera pallida ATCC 43644]
          Length = 429

 Score = 89.9 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 120/337 (35%), Gaps = 19/337 (5%)

Query: 14  WMIMFIILVSLY---FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +I+  +L SLY   +LK    P+  ALI+     PI + F ++        A       
Sbjct: 31  ALIVLAVLASLYAIHWLKPILVPIALALILACLFSPITTYFRTRWSLGPITSA------- 83

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + LF++  +   +  ++    L   +         +   +S        +E +  + +  
Sbjct: 84  VTLFVLSTVLGVFVFIITANSLFQAITSLPMQFEFIIGKISS-----RLTETYRDYPALR 138

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
             L       L       +                  + ++  + F   +   ++ ++  
Sbjct: 139 GVLPDPDAVDLLGRTNALLVEGLKSSYQELTVRVGEGVVVMTLVLFLLAETEILAPRVIR 198

Query: 191 LGEHLFPA--YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
               L       + + R +   +R+  +  T++ +  G+ +   YW  G+P  + +G+  
Sbjct: 199 FFRPLQRDAQEAEALLRGLVHQVRAFLVARTMLNLMLGMAMAGVYWAFGLPFALLMGLAL 258

Query: 249 AIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           AI+  IP   PI   F  V +    +G + +A  L       + +    L P+L+G  + 
Sbjct: 259 AILNYIPYLGPILGGFPPVLMLFASEGTLSDALLLLAVYIGIITMEGYVLTPWLMGRSLD 318

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L         +      G +GL +   + A I ++++
Sbjct: 319 LNGTTVLIACLVWWFLWGDIGLILAMPITAAINLVFQ 355


>gi|327192209|gb|EGE59178.1| putative permease protein [Rhizobium etli CNPAF512]
          Length = 424

 Score = 89.9 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/326 (13%), Positives = 104/326 (31%), Gaps = 11/326 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  Q      ++   +  LY       P ++ + I +   P+      +   S     V 
Sbjct: 60  LKRQIFFWLAVLVFFIAFLYVFSSILLPFIAGMAIAYFLDPVADRLE-RLGLSRMMATVG 118

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             ++ + +F + L+ L    + +  +   ++               +     W       
Sbjct: 119 ILIAFVIVFALALMILIPVLISQFNDFAERLPGYISQLQQFITQTQNSLLPDWVKSQAGT 178

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
              +   +      FL       +       G   +D    ++   +  F+   D   + 
Sbjct: 179 IKDNLSGILSEGMGFLTG-----LFAQIWNSGKAIVDVISLLVVTPVVAFYILLDWDRMV 233

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            ++D      +    ++I++ + + I     G   + +  G+   +   L G+   + +G
Sbjct: 234 SKVDQWIPRDYVGDVRQIAKEIDQAIAGFIRGQGSLCLILGIYYAAGLSLVGLNFGLLIG 293

Query: 246 VITAIMAMIPGGAPIS----FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +   +++ IP    +        V+I        +    L ++ +   F+    L+P LV
Sbjct: 294 LFAGMISFIPYVGSLVGLILAVGVAIVQFWPDYPWIGLVLAVFFSG-QFLEGNILQPKLV 352

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLG 327
           G  + L  +   F L       G +G
Sbjct: 353 GSSVGLHPVWLMFALFAFGALFGFVG 378


>gi|261839604|gb|ACX99369.1| membrane protein [Helicobacter pylori 52]
          Length = 348

 Score = 89.9 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 137/363 (37%), Gaps = 25/363 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  Q     + +      +Y  + F   VL A ++    + +      +        + +
Sbjct: 1   MKAQYFFWILFLIGFYWMIYLYQDFLMDVLIAGLLCVGFFQVKVFLDKRFLN--LISSFL 58

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +  + IVPL F+ Y     + E+        +    + +WL         +E  + 
Sbjct: 59  CVLVLASVLIVPLYFIVYKSSNIIFEI------NFEKFSALIKWLKG-----TITENLSH 107

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +         E F  T+   ++ + +S  G   L      +F++  LFFF+  G    
Sbjct: 108 FPTIHDGASKFLENFSATSITGYLLKISSYVGKYSLKLITDALFILGLLFFFFYYGERFY 167

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +   L     KKI   V  ++R   L   I  I EG+  G      G      LG
Sbjct: 168 RYFLGVLP-LGMNQSKKIFEEVAGILRIVLLTSLITIILEGVAFGLMIVWFGHDGWS-LG 225

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLV-- 301
           ++  + +++P  G  + +  ++IY L  GN+  A  + L+  + +  ++D  ++P L+  
Sbjct: 226 ILYGLASLVPAVGGALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVF 285

Query: 302 ------GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                    +K+  +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 286 IKKRIFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345

Query: 356 ISS 358
              
Sbjct: 346 ACE 348


>gi|109947348|ref|YP_664576.1| hypothetical protein Hac_0787 [Helicobacter acinonychis str.
           Sheeba]
 gi|109714569|emb|CAJ99577.1| amaA [Helicobacter acinonychis str. Sheeba]
          Length = 348

 Score = 89.9 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 67/363 (18%), Positives = 140/363 (38%), Gaps = 25/363 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  Q     + +      LY  + F   VL A ++    + +             F +++
Sbjct: 1   MKAQYFFWILFLIGFYWMLYLYQDFLMDVLIAGLLCVGLFQVKVFLDKHFFN--VFSSLL 58

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +  + IVPL F+ Y     + E+        +    + +WL ++      +E  + 
Sbjct: 59  CVLVLASVLIVPLYFIIYKSSNIIFEI------NFEKLSALIKWLKEM-----ITENLSH 107

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +    +    E F  T+   ++ + +S  G   L      + ++  LFFF+  G    
Sbjct: 108 FPAIHDGVSKFLENFNATSITGYLLKISSYVGKYGLKLITDALLILGLLFFFFYYGERFY 167

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                +   L     KKI   V  ++R   L   I  I EG+  G      G      LG
Sbjct: 168 HYFLGVLP-LQIHQSKKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFGHDGW-FLG 225

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLV-- 301
           ++  + +++P  G  + +  ++IY L  G++  A  + L+  + +  ++D  L+PFL+  
Sbjct: 226 ILYGLASLVPAVGGALIWIPIAIYELYHGHVNGAIFIVLYSILLIGGLIDSVLKPFLIVV 285

Query: 302 ------GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                    +K+  +  FF ++ G+   G  G+ +GP + A    + +       + ++K
Sbjct: 286 VKKRIFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQKEQK 345

Query: 356 ISS 358
              
Sbjct: 346 TCE 348


>gi|330941425|gb|EGH44238.1| hypothetical protein PSYPI_18336 [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 359

 Score = 89.9 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 54/345 (15%), Positives = 128/345 (37%), Gaps = 16/345 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +++  +  L     P L AL++ +   P+                   T+SV+ +F +
Sbjct: 13  LALLVAFVVLLHPILTPFLVALLLAYMGDPLVDRLERAGLSR--------TLSVVVVFGL 64

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLK 134
             L L    ++ +  L  ++    +    +  WL    +P       L        +   
Sbjct: 65  FTLVLMALLLILVPMLAKQLFRLYELAPQILDWLQHAALPWVQAKFGLADGFWKFDKIKA 124

Query: 135 ILSETFLKT-NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            +SE   +  + +  +   A+   +  + +  +++ + +  F   RD   ++ ++  L  
Sbjct: 125 AISEHMGQAGDIVSIVLSQATASSLALIGWLTNLVLIPVVCFLLLRDWDIMTGKIRGLLP 184

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
               A   K++    +V+ +   G  ++ +G G++  +   L G+   + +GVI  + A+
Sbjct: 185 RQREAQIVKLAGECHEVLGAFIRGQLLVMVGLGVIYAAGLMLVGLELGLLIGVIAGLAAI 244

Query: 254 IPGGAPISFTAVSIY--LLIKGN---IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +P    +     ++   L   G             +      +    L P LVG  I L 
Sbjct: 245 VPYMGFVIGIGSALVAGLFQFGGDLYPMMGIVAVFFFMFGQALEGMVLTPLLVGDRIGLH 304

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            +   F ++ G    G  G+ +   + A+I V+ +      K+++
Sbjct: 305 PVAVIFAILAGGELFGFTGILLALPVAAVIMVLVRHMHDLYKDSE 349


>gi|210620795|ref|ZP_03292246.1| hypothetical protein CLOHIR_00189 [Clostridium hiranonis DSM 13275]
 gi|210155145|gb|EEA86151.1| hypothetical protein CLOHIR_00189 [Clostridium hiranonis DSM 13275]
          Length = 340

 Score = 89.9 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 54/327 (16%), Positives = 112/327 (34%), Gaps = 10/327 (3%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           L FL G   P + A ++ +   PI   F +K +        I    ++ + +  L+    
Sbjct: 2   LDFLIGLLMPFVIAFVLAYIFNPIIKFFENKFKAKRGASLFITYGGLIVVLLTILVMTLP 61

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             +  + ++V+               +S     + A+ +          L  LS  F+ +
Sbjct: 62  VIIESIIDIVNNAPTYFAETEQFLINVSRHLENIDAATMQEIWDKISNMLPNLSSLFVGS 121

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
            G   I +    FG    ++ L+ I      F+   +   I   L      +        
Sbjct: 122 IGE--IFKKTFSFGKFIFNFVLAFIIC----FYILLEKEKIFDFLKKAVYVVLGDKKASF 175

Query: 204 ----SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
               SR +   +   F G    +I  G++ G   ++      +  G +  +M MIP   P
Sbjct: 176 VLTVSRDLNDNVGKYFTGKIFDSIIVGVLSGIGLFVLKSKYALLFGTLMGLMNMIPYFGP 235

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                  + + +  +   A    ++  +   +    + P +VGG + L    T   +  G
Sbjct: 236 AIGMTPVVLINLFNDPKIALFSLIYLLVVQQVEVAFIEPKVVGGQLGLSPFLTILAVTVG 295

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESI 346
               G+ G+ +   +M ++ V   E +
Sbjct: 296 GGFFGIPGMILSTPIMGVLKVYITEYV 322


>gi|51892636|ref|YP_075327.1| hypothetical protein STH1498 [Symbiobacterium thermophilum IAM
           14863]
 gi|51856325|dbj|BAD40483.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 359

 Score = 89.9 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 49/329 (14%), Positives = 115/329 (34%), Gaps = 9/329 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
            + +    + +      P + A ++     P  +  + +     +    +  +  + + +
Sbjct: 21  FLVVSWALITYALPIVMPFVLAWVLAEMMDPAVTWLVRRARMPRSLAVAVVLLFFVGIMV 80

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
                   Y + E++ L+  +      G+ +   +      ++  +L        Q    
Sbjct: 81  ALFTVGVAYVVGEIRALIRNLPYLYAAGLDISSQV-----LLYLEDLVGSLPESVQVTIG 135

Query: 136 LSETFLKTNGIDFIPRFASRFGMIF--LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            +   L+ N   ++   A R G I     + +++I   +A FF  RD   I   L SL  
Sbjct: 136 ENLGKLQANLGTYLETLARRLGFITSVPGFLINLIITFVAAFFITRDRQEIGAFLLSLFP 195

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
             +    +++   V            ++ +   LV      + G    V  G+   ++ +
Sbjct: 196 AKWRDQLRQVRVEVLTNAIGWAKAQVLLILMTMLVSMLGLAIIGADYVVLAGLAIGLLDI 255

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +P  G    +    +Y    G +     L +  A  +  + + L   +VG  + L  L  
Sbjct: 256 LPIVGPGALYAPWILYSAFTGRLAFGVKLLIVYA-VVSALRQVLESKVVGDRVGLHPLAV 314

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
              +  G++  G LG+  GP++  L+  +
Sbjct: 315 LLSIYLGIKFFGALGVVFGPLITILLKAM 343


>gi|15645192|ref|NP_207362.1| membrane protein [Helicobacter pylori 26695]
 gi|8928454|sp|O25291|Y567_HELPY RecName: Full=UPF0118 membrane protein HP_0567
 gi|2313674|gb|AAD07623.1| membrane protein [Helicobacter pylori 26695]
          Length = 348

 Score = 89.9 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 65/363 (17%), Positives = 137/363 (37%), Gaps = 25/363 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  Q     + +      +Y  + F    L A ++    + +      +        + +
Sbjct: 1   MKAQYFFWILFLIGFYWMIYLYQDFLMDALIAGLLCVGFFQVKVFLDKRFFN--VVSSFL 58

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +  + IVPL F+ Y     + E+        +    + +WL  I      +E  + 
Sbjct: 59  CVLILASVLIVPLYFIVYKSSNIIFEI------NFEKFSALIKWLKGI-----ITENLSH 107

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +         E F   +   ++ + +S  G   L      +F++  LFFF+  G    
Sbjct: 108 FPTIHDGASKFLENFSAASITGYLLKISSYVGRYSLKLITDALFILGLLFFFFYYGERFY 167

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +   L     KKI   V  ++R   L   I  I EG+  G      G      LG
Sbjct: 168 RYFLGVLP-LGMNQSKKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFGHDGWS-LG 225

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLV-- 301
           ++  + +++P  G  + +  ++IY L  GN+  A  + L+  + +  ++D  ++P L+  
Sbjct: 226 ILYGLASLVPAVGGALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVF 285

Query: 302 ------GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                    +K+  +  FF ++ G+   G  G+ +GP + A    + +       +N++K
Sbjct: 286 IKKRIFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNEQK 345

Query: 356 ISS 358
              
Sbjct: 346 ACE 348


>gi|300711730|ref|YP_003737544.1| HTR-like protein [Halalkalicoccus jeotgali B3]
 gi|299125413|gb|ADJ15752.1| HTR-like protein [Halalkalicoccus jeotgali B3]
          Length = 389

 Score = 89.9 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 55/332 (16%), Positives = 116/332 (34%), Gaps = 33/332 (9%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + Y ++ F A V+ A+ + ++  PI+     +        A++A V     F++ L +  
Sbjct: 24  AAYVVRAFIAVVVFAVFLYYSVRPIHRYL-RRFGLPRRLRAMLAIVLFGVPFLILLAYTV 82

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              ++E ++ V    + NQ                   E +        +++    T   
Sbjct: 83  AIVVIETQQFVEAYDIQNQ-------------VLNSGLERFDLAALDLDTVQRTVTTAGT 129

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH--LFPAYW 200
              I  +    S    +     +  + +++  ++   DG  +   +    +   +   Y+
Sbjct: 130 QGSILAVFFSLSSAASVVGSVLIQSLILVVLTYYMLVDGPQLRAWVLENLDDTGIIRRYF 189

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA-----GVPSHVALGVITAIMAMIP 255
            ++   +   +    + + + AI  G+V+   Y +       VP    LG +  I ++IP
Sbjct: 190 DEVDPELSMTLFGNIVNVFVTAIV-GVVVFFTYNVFVPEAVEVPFPSLLGALAGIGSLIP 248

Query: 256 -GGAPISFTAVSIYLLIKGN--------IFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             G  + +  V I L             I+      + G    FI D  +R  + G    
Sbjct: 249 VVGIKLVYLPVGIGLAAAVVAAGQTPLLIYVGIFFVVAGVFVDFIPDFFIRALISGE--N 306

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
                     + G    G  GLF+ PVL+ L+
Sbjct: 307 THTGMLLLSYIVGPAVFGFYGLFLVPVLLILL 338


>gi|331677560|ref|ZP_08378235.1| putative permease [Escherichia coli H591]
 gi|331074020|gb|EGI45340.1| putative permease [Escherichia coli H591]
          Length = 123

 Score = 89.9 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 1/109 (0%)

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  ++  G         I+L   G+    T L +W    +  +D  +RP L+     L
Sbjct: 1   MILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSG-VVGTLDNVIRPMLIRMGADL 59

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           P +    G++GG+   G++GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 60  PLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQP 108


>gi|300119211|ref|ZP_07056908.1| hypothetical protein BCSJ1_23269 [Bacillus cereus SJ1]
 gi|298723431|gb|EFI64176.1| hypothetical protein BCSJ1_23269 [Bacillus cereus SJ1]
          Length = 355

 Score = 89.9 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 49/311 (15%), Positives = 110/311 (35%), Gaps = 11/311 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L A  I +   P+      +            T++++ ++I+    + Y       
Sbjct: 43  ITPFLIACFIAYLLHPLIEKIHKEGMPR--------TLAILLIYILFFGGIGYGIYKGTP 94

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            ++ ++   N+      +       G+      T +       K+          I  + 
Sbjct: 95  IVIKQLQEINEQFPQFTKMYDSWMDGVTEQ---TANFPSFIHEKVKQIFIGVETKIQALL 151

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     LD  L I  +   +F+  +D          L    + +  + +++ + K 
Sbjct: 152 NKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQMLAKEIDKS 211

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI     ++ + 
Sbjct: 212 LGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGAIPALMIA 271

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +        +  AI  F+    L P++VG  +++  +     L+ G    G++GL I
Sbjct: 272 ATVSTSLLIKAGITIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEVAGIVGLLI 331

Query: 331 GPVLMALIAVI 341
              ++A+I  +
Sbjct: 332 SVPVLAVIRTV 342


>gi|167624250|ref|YP_001674544.1| hypothetical protein Shal_2326 [Shewanella halifaxensis HAW-EB4]
 gi|167354272|gb|ABZ76885.1| protein of unknown function UPF0118 [Shewanella halifaxensis
           HAW-EB4]
          Length = 373

 Score = 89.9 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 138/361 (38%), Gaps = 15/361 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           +E   +PQ +   +I+    +++YF  G  AP+L AL++ F   WP+    +++   +  
Sbjct: 10  KERFSDPQAVTLVLILLGFALAIYFAGGLLAPLLIALVLAFLLEWPVAQ--MARIGINRP 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMWA 119
             A +  V  + L ++    L      +   L+  +      G+   + +++  P  +  
Sbjct: 68  TAASLVLVLFIGLMLLISFGLVPSLWRQGVSLMGDLPSMIDKGLNTAQLYINQYPQFVNP 127

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           S+L         ++    +  L T  +  I +    +    L   +  I + + +FFF +
Sbjct: 128 SQL--------DTMVAELKKMLDTQHLLDIGKQILGYSASLLVLMVYAILIPLLVFFFLK 179

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D   + +              +K+   + + I +   G  I  +  G+V    + +  + 
Sbjct: 180 DKDELIKGSKRFFPT-NRDLARKVWSEMHQQIFNYIRGKVIEIVIIGVVSYIFFAVMDLR 238

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLR 297
               LGV+T +  +IP  GA +    +++   ++  I       + G   +  +D   L 
Sbjct: 239 YAALLGVLTGLSVLIPYVGATLVTLPIALVAFVQWGISPEFGYLIVGYGIIQALDGNVLV 298

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           P L    + L  +     ++      G+ G+F    L +L+  +     +   +  ++  
Sbjct: 299 PILFSDAVDLHPVFIIAAVLIFGGLWGVWGVFFAIPLASLVKAVINAWPVPNAQGLQQQD 358

Query: 358 S 358
           S
Sbjct: 359 S 359


>gi|322516709|ref|ZP_08069618.1| membrane protein [Streptococcus vestibularis ATCC 49124]
 gi|322124742|gb|EFX96180.1| membrane protein [Streptococcus vestibularis ATCC 49124]
          Length = 392

 Score = 89.9 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 55/360 (15%), Positives = 128/360 (35%), Gaps = 19/360 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYF----------LKGFFAPVLSALIIGFTSWPI---YSSF 51
           +LN Q +M ++I+ +I +++            +  F   ++  L+I    + +       
Sbjct: 18  ILNNQVVMAFLILLLIGLTVLIFTKISPIFSPVIQFLTIIMLPLVISMLLYYLIKPLVLL 77

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS 111
           + K   + T   ++    +  L +  +         ++  L+                  
Sbjct: 78  VEKTGLNRTMSILLIYAILALLLVWGISTAIPNLQDQILILIRNAPSYIARANSETERWL 137

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
            +P            LS   +  +       T+ + +I  FAS    +     ++II   
Sbjct: 138 KLPILSNFHGDLEAVLSDFSARMVNYAEHFSTSALTWIGTFASTVARVT----VAIILTP 193

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
             LF+  RD   +     S     F     ++   +   +     G   +AI   ++   
Sbjct: 194 FILFYLLRDSQKMKHSFVSALPTRFRKTTVRMLSDINNQLEGYVQGQVTVAIVVAIMFCI 253

Query: 232 AYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
            + + G+   +  G++   + MIP  G+ ++   V I  L++G       + +   IE  
Sbjct: 254 MFKIVGLRYGMTFGILAGFLNMIPYLGSFLAMVPVVIMGLVQG-PAMLIKVLIIFVIEQT 312

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           I  + + P ++G  + +  +   F L+      G+ G+ +G  + A + V+ +E     +
Sbjct: 313 IEGRFVSPLVLGNKLSIHPITIMFILLTAGSLYGVWGVLLGIPIYASVKVVVREIFDWYR 372


>gi|311900616|dbj|BAJ33024.1| hypothetical protein KSE_72690 [Kitasatospora setae KM-6054]
          Length = 371

 Score = 89.9 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 93/306 (30%), Gaps = 19/306 (6%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            P++ AL+     +P+   F+ +        A +    ++ +    +  L    +    +
Sbjct: 54  IPMVIALLATALLYPVMPWFVRR-GVKRGVAAGLTCAILVLVVTGGIALLVNSLVNSAPQ 112

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           + S +  A                       W           +   +   +  +D +  
Sbjct: 113 IASGLQQAGDRIAS-----------------WLGPFGDKVQYALKESSGSGSTLVDSLAN 155

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                  +        +  +  +FFF RDG      +  L             +     +
Sbjct: 156 GVLSGLGLVTQLLTGGVLALALVFFFLRDGHRFGDAMHELMPGRHADTVIACGQQAFTAM 215

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLL 270
                G T+IA+ +   +     + GVP    LG +  + A IP  GA +S T   +  L
Sbjct: 216 AGFMRGTTLIALIDATFISIGLLVLGVPGAAGLGALVFMGAYIPFVGAFLSGTVAVLVAL 275

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             G +  A            I    L+P +    ++L        +V G    G++G  +
Sbjct: 276 ANGGLGTALWALGVVLAVQAIEGNILQPLIQSRTVELHPATIMIAVVAGSGIAGIIGALL 335

Query: 331 GPVLMA 336
              + A
Sbjct: 336 AVPVSA 341


>gi|169829827|ref|YP_001699985.1| hypothetical protein Bsph_4404 [Lysinibacillus sphaericus C3-41]
 gi|168994315|gb|ACA41855.1| UPF0118 membrane protein in ctaF 3'region [Lysinibacillus
           sphaericus C3-41]
          Length = 352

 Score = 89.9 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 61/334 (18%), Positives = 120/334 (35%), Gaps = 2/334 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I R +++  ++++ YF+     P++ A I  F   PI   F  + + S         +
Sbjct: 8   KLIFRLLVILSLIIAAYFIIPVSMPLILAAISAFFLEPIVMFFKRRWKMSRKIAVAFIYI 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +  +         M ++  L  +          +   + +               S
Sbjct: 68  VSVIIISIICYISITQIMTQIILLSKQAPYYISKLSDMWLHMQENISKYTEDFPPEVSTS 127

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             ++     +   +T    F     S F        +S++  +IALF F  D   + +  
Sbjct: 128 LQKTTMDFIKKIEETFLSFFNYSKVSAFFSEIPRLFISLLVYMIALFLFMLDLPKLKRIT 187

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
               +       K I   +             ++   G V      L      + + +I 
Sbjct: 188 YKYLKPNTAKKIKIILNRLKDATLGYMKAHLFVSFIIGGVTLVGLLLIQPKYAITMTIII 247

Query: 249 AIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++ ++P  G+ I       Y L+ GN   A  LF+  AI L I+ + + P L+G  I L
Sbjct: 248 WLIDIVPFLGSIIILAPWGFYHLLMGNTAIAVKLFILAAILL-IIRRVVEPKLMGDHIGL 306

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             LPT   +  G++  G++GL IGP ++     +
Sbjct: 307 STLPTLIAMFIGLQLFGIIGLLIGPFVIIFFIAL 340


>gi|47566578|ref|ZP_00237400.1| hypothetical protein membrane Spanning protein [Bacillus cereus
           G9241]
 gi|47556608|gb|EAL14940.1| hypothetical protein membrane Spanning protein [Bacillus cereus
           G9241]
          Length = 361

 Score = 89.9 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 113/318 (35%), Gaps = 11/318 (3%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           ++  K    P L A  I +   P+      +            T++++ ++I+    + Y
Sbjct: 42  IFVFKVAITPFLIACFIAYLLHPLIEKIHKEGMPR--------TLAILLIYILFFGGIGY 93

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                   ++ ++   N+      +       G+      T +       K+        
Sbjct: 94  GIYKGTPVVIKQLQEINEQFPQFTKMYDSWMDGVTEQ---TANFPSFIHEKVKQIFIGVE 150

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             I  +           LD  L I  +   +F+  +D          L    + +  + +
Sbjct: 151 TKIQALLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQIL 210

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
           ++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI   
Sbjct: 211 AKEIDKSLGSYIRGQLFVCLVLGGVSALSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGA 270

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G    
Sbjct: 271 IPTLMIAATVSTSLLVKAGITIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEVA 330

Query: 324 GLLGLFIGPVLMALIAVI 341
           G++GL I   ++A+I  +
Sbjct: 331 GIVGLLISVPVLAVIRTV 348


>gi|322374413|ref|ZP_08048927.1| membrane protein [Streptococcus sp. C300]
 gi|321279913|gb|EFX56952.1| membrane protein [Streptococcus sp. C300]
          Length = 388

 Score = 89.9 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 55/336 (16%), Positives = 116/336 (34%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI L  L FL     PV+ + ++ +   PI       K         I  V +    I
Sbjct: 42  ISFIFLPVLDFLGVVMLPVILSGLLYYLLNPIVDWMEKHKINR-ILAISIVFVIIGLFII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      V    +    V   L              + LS+  S   
Sbjct: 101 WGLAVAIPNLQRQVLNFAKNVPTYLEDADKVINDLVTKRLPDDFRPQLEQVLSNVSSEAT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +  + + +  ++++  F S    +     +++I +   LF+  RDG  +   L     + 
Sbjct: 161 MWASKISSQAVNWVSAFISSVSQV----IVAVIIVPFMLFYLLRDGKGLRDYLTKFIPNK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   V K + +   G   +AI   ++    + + G+   V LG+   I+ ++P
Sbjct: 217 LKEPVGQVLSDVNKQLSNYVRGQVTVAIIVAIMFIIFFKIIGLRYAVTLGITAGILNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPVMLLKVIVVFIVEQTIEGRFVSPLILGSQLNIHPINVLFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      G+ G+ +G  + A   V+        K+
Sbjct: 337 LLTSGSMFGIWGVLLGIPVYASAKVVISAIFNWYKK 372


>gi|329117036|ref|ZP_08245753.1| putative membrane protein [Streptococcus parauberis NCFD 2020]
 gi|326907441|gb|EGE54355.1| putative membrane protein [Streptococcus parauberis NCFD 2020]
          Length = 393

 Score = 89.9 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 132/361 (36%), Gaps = 21/361 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSL-------YFLKGFFA-------PVLSALIIGFTSWPIYSS 50
           +LN Q +   +++ + L+++       +  +  F+       P++ + I+ + + P    
Sbjct: 18  VLNNQALSIMLVVLVFLLTILVFTKVSFLFRPIFSFLTILMLPLVISTILYYLTKP-SVD 76

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
            I     + T    I    ++C+ I     L      +M   +  +              
Sbjct: 77  LIENLGPNRTTSIFIVFGLIICILIWAFSGLIPMISNQMTTFLKDLPKYVGTVNQEANKF 136

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
            +    +         L++  +  +        + ID+    A  F        +SII  
Sbjct: 137 LENKWLVSYQAELQDMLTNITNKALDYAQTFSKHAIDW----AGNFAGAIARITISIIIS 192

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
              LF+F RD   +   +             ++   + K +     G   +AI  G++  
Sbjct: 193 PFILFYFLRDSGKMKDGIVETLPTRLRKPIARVLGDINKQLSGYVQGQVTVAIIVGIMFS 252

Query: 231 SAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
             + + G+   V  G++   + M+P  G+ ++   V I  L++G +     L ++  IE 
Sbjct: 253 IMFSIVGLKYSVTFGIVAGFLNMVPYLGSFLAMIPVVIMSLVQGPLMLVKVLIVF-TIEQ 311

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            I  + + P ++G  + +  +   F L+      G+ G+F+   + A + V+ KE     
Sbjct: 312 TIEGRFVTPLVLGNKLSIHPITIMFLLLTAGAMFGVWGVFLVIPIYASVKVVVKELFDWY 371

Query: 350 K 350
           K
Sbjct: 372 K 372


>gi|294651082|ref|ZP_06728419.1| membrane lipofamily protein [Acinetobacter haemolyticus ATCC 19194]
 gi|292823031|gb|EFF81897.1| membrane lipofamily protein [Acinetobacter haemolyticus ATCC 19194]
          Length = 398

 Score = 89.9 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 65/338 (19%), Positives = 128/338 (37%), Gaps = 24/338 (7%)

Query: 28  KGFFAPVLSALIIGFTSWPI-----YSSFISKKEESSTFLAVIATVSVMCLFIVPLLF-L 81
           K    P + A +I +   P+               S  F+ +  T++V+  F+ PL++  
Sbjct: 26  KPIVIPFVGAFLIAYFFSPLVDVLVKIKLPRWLAISVVFIGIGVTLTVVLWFLAPLVWKQ 85

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
             Y    +   +  V                +P      +L    +   Q  K++ E   
Sbjct: 86  LIYARDSIPAGIHWVNATF------------LPWMSETFDLVPMEIDTDQISKVVMEYVQ 133

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL---FFFYRDGFSISQQLDSLGEHLFPA 198
                D I  FA R     L++      +I+     F+F  D   + Q L  L    + A
Sbjct: 134 TNYSSDSIQTFALRLAQSGLNFIQIGGIIILIPIISFYFLLDWERMLQSLRRLIPRPYEA 193

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GG 257
              KI R    V+ +   G  ++ +  G++      L G+   + +G++  + ++IP  G
Sbjct: 194 STLKIIRECHSVLGAFVKGQFLVMLLLGVIYAVGLQLIGLEVGLIIGMVAGLASIIPYLG 253

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--DKTLRPFLVGGPIKLPFLPTFFG 315
             +   A  I  L +  +     L +     +  +     L+PFL+G  I L  +   F 
Sbjct: 254 FAVGIIAAVIATLFQFGLDWTQLLLVGAVFLVGQMVEGYILQPFLLGDKIGLSPVAVVFA 313

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           ++ G +  G LG+ I   + A+I V+ + +    ++++
Sbjct: 314 VLAGAQLAGFLGMLIALPVAAVIVVLLRHARDNYEKSR 351


>gi|237803519|ref|ZP_04591104.1| putative lipoprotein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331025501|gb|EGI05557.1| putative lipoprotein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 118

 Score = 89.9 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/107 (32%), Positives = 61/107 (57%)

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
             + +AG+P  + LG++T + ++IP G P+ +   + +L+ +G    A  L +WG   + 
Sbjct: 10  IGFLIAGIPGALVLGILTFLFSLIPMGPPLVWLPATAWLVWQGEYGMAVFLGIWGMFIIS 69

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
            VD  L+P+L+     LP +    G+ GG+   G +GLFIGP L+A+
Sbjct: 70  GVDNVLKPYLISRGGNLPLVIVLLGVFGGLLAFGFIGLFIGPTLLAV 116


>gi|30264460|ref|NP_846837.1| hypothetical protein BA_4618 [Bacillus anthracis str. Ames]
 gi|47529918|ref|YP_021267.1| hypothetical protein GBAA_4618 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187282|ref|YP_030534.1| hypothetical protein BAS4286 [Bacillus anthracis str. Sterne]
 gi|49478624|ref|YP_038441.1| hypothetical protein BT9727_4123 [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141116|ref|YP_085713.1| hypothetical protein BCZK4134 [Bacillus cereus E33L]
 gi|165872760|ref|ZP_02217388.1| putative membrane protein [Bacillus anthracis str. A0488]
 gi|167636499|ref|ZP_02394796.1| putative membrane protein [Bacillus anthracis str. A0442]
 gi|167638692|ref|ZP_02396968.1| putative membrane protein [Bacillus anthracis str. A0193]
 gi|170689642|ref|ZP_02880824.1| putative membrane protein [Bacillus anthracis str. A0465]
 gi|170709393|ref|ZP_02899804.1| putative membrane protein [Bacillus anthracis str. A0389]
 gi|177653234|ref|ZP_02935486.1| putative membrane protein [Bacillus anthracis str. A0174]
 gi|190566844|ref|ZP_03019760.1| putative membrane protein [Bacillus anthracis Tsiankovskii-I]
 gi|196034451|ref|ZP_03101860.1| putative membrane protein [Bacillus cereus W]
 gi|218905585|ref|YP_002453419.1| hypothetical protein BCAH820_4470 [Bacillus cereus AH820]
 gi|225866372|ref|YP_002751750.1| hypothetical protein BCA_4502 [Bacillus cereus 03BB102]
 gi|227817169|ref|YP_002817178.1| hypothetical protein BAMEG_4655 [Bacillus anthracis str. CDC 684]
 gi|229601469|ref|YP_002868677.1| hypothetical protein BAA_4638 [Bacillus anthracis str. A0248]
 gi|254684146|ref|ZP_05148006.1| hypothetical protein BantC_09855 [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724683|ref|ZP_05186466.1| hypothetical protein BantA1_19790 [Bacillus anthracis str. A1055]
 gi|254736493|ref|ZP_05194199.1| hypothetical protein BantWNA_15131 [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741531|ref|ZP_05199218.1| hypothetical protein BantKB_11057 [Bacillus anthracis str. Kruger
           B]
 gi|254751370|ref|ZP_05203407.1| hypothetical protein BantV_02826 [Bacillus anthracis str. Vollum]
 gi|254757702|ref|ZP_05209729.1| hypothetical protein BantA9_05266 [Bacillus anthracis str.
           Australia 94]
 gi|301055899|ref|YP_003794110.1| membrane protein [Bacillus anthracis CI]
 gi|30259118|gb|AAP28323.1| putative membrane protein [Bacillus anthracis str. Ames]
 gi|47505066|gb|AAT33742.1| putative membrane protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181209|gb|AAT56585.1| membrane protein, putative [Bacillus anthracis str. Sterne]
 gi|49330180|gb|AAT60826.1| probable membrane protein [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|51974585|gb|AAU16135.1| probable membrane protein [Bacillus cereus E33L]
 gi|164711536|gb|EDR17085.1| putative membrane protein [Bacillus anthracis str. A0488]
 gi|167513540|gb|EDR88910.1| putative membrane protein [Bacillus anthracis str. A0193]
 gi|167528092|gb|EDR90889.1| putative membrane protein [Bacillus anthracis str. A0442]
 gi|170125692|gb|EDS94608.1| putative membrane protein [Bacillus anthracis str. A0389]
 gi|170666412|gb|EDT17193.1| putative membrane protein [Bacillus anthracis str. A0465]
 gi|172081516|gb|EDT66588.1| putative membrane protein [Bacillus anthracis str. A0174]
 gi|190561835|gb|EDV15804.1| putative membrane protein [Bacillus anthracis Tsiankovskii-I]
 gi|195992993|gb|EDX56952.1| putative membrane protein [Bacillus cereus W]
 gi|218540217|gb|ACK92615.1| putative membrane protein [Bacillus cereus AH820]
 gi|225785955|gb|ACO26172.1| putative membrane protein [Bacillus cereus 03BB102]
 gi|227003791|gb|ACP13534.1| putative membrane protein [Bacillus anthracis str. CDC 684]
 gi|229265877|gb|ACQ47514.1| putative membrane protein [Bacillus anthracis str. A0248]
 gi|300378068|gb|ADK06972.1| conserved hypothetical membrane protein [Bacillus cereus biovar
           anthracis str. CI]
          Length = 355

 Score = 89.9 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 49/311 (15%), Positives = 110/311 (35%), Gaps = 11/311 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L A  I +   P+      +            T++++ ++I+    + Y       
Sbjct: 43  ITPFLIACFIAYLLHPLIEKIHKEGMPR--------TLAILLIYILFFGGIGYGIYKGTP 94

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            ++ ++   N+      +       G+      T +       K+          I  + 
Sbjct: 95  IVIKQLQEINEQFPQFTKMYDSWMDGVTEQ---TANFPSFIHEKVKQIFVGVETKIQALL 151

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     LD  L I  +   +F+  +D          L    + +  + +++ + K 
Sbjct: 152 NKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQMLAKEIDKS 211

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI     ++ + 
Sbjct: 212 LGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGAIPALMIA 271

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +        +  AI  F+    L P++VG  +++  +     L+ G    G++GL I
Sbjct: 272 ATVSTSLLIKAGITIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEVAGIVGLLI 331

Query: 331 GPVLMALIAVI 341
              ++A+I  +
Sbjct: 332 SVPVLAVIRTV 342


>gi|258510443|ref|YP_003183877.1| sporulation integral membrane protein YtvI [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477169|gb|ACV57488.1| sporulation integral membrane protein YtvI [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 375

 Score = 89.9 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 46/328 (14%), Positives = 109/328 (33%), Gaps = 5/328 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    +   +++L  L  +  P +   +      P+      +         ++   
Sbjct: 19  EIVILLAFIAAFILALASLMQYILPFVIGWVFAILLIPVVRWLERR-GMKRLPSVLLVLG 77

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + L +     +    + E    VS   +  +  +       +I             +S
Sbjct: 78  VSVLLIVAISAGIIIGALREATSFVSHSQVFFRVQLAQIE--GEIENSESLYGQLPPQVS 135

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +     +          +  I            D     +  ++  FF  +    +  + 
Sbjct: 136 NAVQSALTQFAHGLEGSVHKIITGLIGIVTHLPDTLFIAVISVVTAFFILQRRERMLARF 195

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +    +      +   + +    T     I+      +     ++ G P  + LG++ 
Sbjct: 196 YRMMPPGWAPKLNAVFEDMERAFLGTIRVQFILMCLSMFLGMIGMFVLGFPYAILLGILF 255

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +  ++P  G+ I     +I  LI G++  A  +     + + I+   + P ++   + L
Sbjct: 256 GLAGLVPIVGSAILTVPWAIVALITGHVAVAIKVLAL-QVVISIIRHAVEPKILADSVGL 314

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             L T FGL  G + MG +GLFIGP+L+
Sbjct: 315 DTLATLFGLYVGFKVMGFIGLFIGPILL 342


>gi|167745366|ref|ZP_02417493.1| hypothetical protein ANACAC_00057 [Anaerostipes caccae DSM 14662]
 gi|167655087|gb|EDR99216.1| hypothetical protein ANACAC_00057 [Anaerostipes caccae DSM 14662]
          Length = 392

 Score = 89.9 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 55/340 (16%), Positives = 126/340 (37%), Gaps = 8/340 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           ++++F++   + FL  F    ++A I+   + P+ +    K      F + +  ++V+  
Sbjct: 22  FLLIFVLPKCIGFLWPF----VAAWIVAMLAHPVIAFLEDKISLPKRFGSALIIIAVIAG 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            I  + F+      ++    + +    +        L +    +  S  +   +     L
Sbjct: 78  LIALISFIVSQLAAQIVGFAANLPDLRETVQTQLMNLKEQAVHLLDSLPYGMGVKFDTML 137

Query: 134 KILSETFLK--TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
               +   K  +   ++    +           +  + M  A + F  D   I Q  +  
Sbjct: 138 GSTDKVLDKAVSAIGNYGMEHSGNVAKGMTSGFIGTVVMFFASYLFIVDKDKIVQGYEKH 197

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              +              V+ S       I +    +L   + LAG+     L V+ AI+
Sbjct: 198 VPKMVRHKIGIFYHNTLGVLASYCWAQVKIMVIIVAILWIGFILAGISYAFFLAVVIAIL 257

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            ++P  G   +    ++Y ++ G+I  A  L +   I L    + L+P ++G  + +  L
Sbjct: 258 DVLPILGTGTAIIPWALYKILTGDIKTAIILLIIYVICLVTK-QVLQPKMMGDSMGISPL 316

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            T F +  G++  G+ G+ +  +L   +  ++K  I   K
Sbjct: 317 ATLFLIYIGLKLSGIGGMLLALILGIFVYNLYKLGIFDRK 356


>gi|182436296|ref|YP_001824015.1| putative integral membrane protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178464812|dbj|BAG19332.1| putative integral membrane protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 471

 Score = 89.9 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 47/319 (14%), Positives = 110/319 (34%), Gaps = 21/319 (6%)

Query: 17  MFIILVSLYFLKGFFAPV-------LSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           + ++  +L+ L    + V        +AL++     P       +          +  V 
Sbjct: 87  LLVLAGTLWVLMRVISAVQLVVLAFAAALLVTAMLQPTVVRL-RRFGLPHGLATAVTAVL 145

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              +  +   F+ +  M  +  L  +V         + RW  D P  +  S++       
Sbjct: 146 GFVIIGLVGWFVVWQVMDNLDTLSDRVRDGIDE---LKRWALDSPFHVTESQI------- 195

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              +       + TN  + I     +   + +++   ++  + +  F   DG  I +   
Sbjct: 196 -NDIAKNLSDTIGTNTEE-ITSAGLQGVTVMVEFLTGLLLAMFSTLFLLYDGRRIWEWSL 253

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L                 + + +   G  ++A+ + + +G   ++  VP  V L V   
Sbjct: 254 KLVPAAARPGVAGAGPRAWRTLTAYVRGTVLVALIDAIFIGFGLYVLNVPLAVPLAVFIF 313

Query: 250 IMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           + A IP    +   A+++ + L+   ++ A    +       I    L+PF++G  +++ 
Sbjct: 314 LFAFIPLVGAVVSGALAVVVALVTEGVWTALWALVVVLAVQQIEGHILQPFILGRAVRVH 373

Query: 309 FLPTFFGLVGGVRTMGLLG 327
            L     +  G    G+ G
Sbjct: 374 PLAVVLAVATGGLVAGIGG 392


>gi|228967465|ref|ZP_04128494.1| hypothetical protein bthur0004_42630 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228792242|gb|EEM39815.1| hypothetical protein bthur0004_42630 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 361

 Score = 89.5 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 112/318 (35%), Gaps = 11/318 (3%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           ++  K    P L A  I +   P+      +            T++++ ++I+    + Y
Sbjct: 42  IFVFKVAITPFLIACFIAYLLHPLIEKIHKEGMPR--------TLAILLIYILFFGGIGY 93

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                   ++ ++   N+      +       G+      T +       K+        
Sbjct: 94  GIYKGTPVVIKQLQEINEQFPQFTKMYDSWMDGVTEQ---TANFPSFIHEKVKQLFVGVE 150

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             I  +           LD  L I  +   +F+  +D          L    +    + +
Sbjct: 151 TKIQALLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRGTGQML 210

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
           ++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI   
Sbjct: 211 AKEIDKSLGSYIRGQLFVCLVLGGVSALSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGA 270

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G    
Sbjct: 271 IPTLMIAATVSTSLLIKAGITIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEVA 330

Query: 324 GLLGLFIGPVLMALIAVI 341
           G++GL I   ++A+I  +
Sbjct: 331 GIVGLLISVPILAVIRTV 348


>gi|228987642|ref|ZP_04147756.1| hypothetical protein bthur0001_43120 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228772102|gb|EEM20554.1| hypothetical protein bthur0001_43120 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 361

 Score = 89.5 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 113/318 (35%), Gaps = 11/318 (3%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           ++  K    P L A  I +   P+      +            T++++ ++I+    + Y
Sbjct: 42  IFVFKVAITPFLIACFIAYLLHPLIEKIHKEGMPR--------TLAILLIYILFFGGIGY 93

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                   ++ ++   N+      +       G+      T +       K+        
Sbjct: 94  GIYKGTPVVIKQLQEINEQFPQFTKMYDSWMDGVTEQ---TANFPSFIHEKVKQIFIGVE 150

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             I  +           LD  L I  +   +F+  +D          L    + +  + +
Sbjct: 151 TKIQALLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQIL 210

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
           ++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI   
Sbjct: 211 AKEIDKSLGSYIRGQLFVCLVLGGVSALSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGA 270

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G    
Sbjct: 271 IPTLMIAATVSTSLLVKAGITIAILQFVESNILSPYIVGKSLRMHPVVIMLALLVGGEVA 330

Query: 324 GLLGLFIGPVLMALIAVI 341
           G++GL I   ++A+I  +
Sbjct: 331 GIVGLLISVPVLAVIRTV 348


>gi|160893763|ref|ZP_02074547.1| hypothetical protein CLOL250_01317 [Clostridium sp. L2-50]
 gi|156864748|gb|EDO58179.1| hypothetical protein CLOL250_01317 [Clostridium sp. L2-50]
          Length = 432

 Score = 89.5 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 110/335 (32%), Gaps = 8/335 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFIS--KKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
            L  F      A I+        +      K         V   +S++C+ +V + F+  
Sbjct: 56  LLMPFVIGFAIAFILNVPMKGFENLLFRNEKSRWYRFRRPVCMVLSIICVVLV-IAFVIT 114

Query: 84  YGMLEMKELVSKVVLANQHGI-PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
             + E+   V+ +       +  +  W  ++  G          +         S   L 
Sbjct: 115 MLIPEVSRTVTAIGQQFPSTMEAIKNWAVNLAAGYPDIVDRIMEIDIAWDKVSESAINLI 174

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            NG   +      F    +   +  +  +    +      ++ +Q   L   LF      
Sbjct: 175 KNGSGSLLSSTFNFATSVVSGIVDFVVGLFFAIYILAQKENLKRQTKGLIYALFKEKTAD 234

Query: 203 IS----RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
                  +  +   +   G  + A   GL+   +  +  +P  + + V   + A+IP   
Sbjct: 235 KIIKTCVMADETFANFITGQCLEACILGLMFFVSMSVLSIPYALTVSVTIVVTALIPVFG 294

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
                 V  +L++  +        +   +   +    + P +VGG + LP +     ++ 
Sbjct: 295 AFIGCGVGAFLILVDDPKKVLVFLILFIVLQQVEGNLIYPHVVGGSVGLPSIWVLVAVII 354

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G   MG+LG+ I   L +++  + KE ++     K
Sbjct: 355 GGDLMGILGMLIFVPLSSVLYALVKEFVLMRLREK 389


>gi|146329499|ref|YP_001209560.1| hypothetical protein DNO_0651 [Dichelobacter nodosus VCS1703A]
 gi|146232969|gb|ABQ13947.1| conserved hypothetical membrane protein [Dichelobacter nodosus
           VCS1703A]
          Length = 353

 Score = 89.5 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 46/338 (13%), Positives = 121/338 (35%), Gaps = 20/338 (5%)

Query: 14  WMIMFII-LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           W+I+F++    LY L     P L A ++ +   P+     + K       AV+   +++ 
Sbjct: 7   WLIVFVMSGFLLYLLSPVLTPFLFAAVLAYLGDPLVDRIEACKIPR--LWAVVTLFALLL 64

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           +    ++ +    + +           +Q    VP +L+ +   M  +      +S    
Sbjct: 65  IGFAVIVLVIIPMIDQ---------QVDQISGRVPNYLNHVQKVMTPTIQKLFDISPETI 115

Query: 133 LKILSETFLK------TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
               ++ FL+      +  ++ +     +     +   + +  + +  F+  RD   +  
Sbjct: 116 NADNAQKFLQDNIKSASAVLNGLFSSLKKPARAVITGVMYLFLIPVVTFYLLRDWDKLLA 175

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           +  +L    +      ++R   +V+     G  I+    G++      + G+   + +G 
Sbjct: 176 KFQALLPRKYHDDICLLARRSDEVLGGFLRGQFIVMCCLGIIYAIGLSIVGLDLGILIGF 235

Query: 247 ITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            + +++ +P    +     +  + L+   +  +   +         +    L P  VG  
Sbjct: 236 FSGLVSFVPYLGLVVGMSISALVALIQFQDWLHLFAIAAVFICGQMMEGMFLTPKFVGDR 295

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
             L  +   F ++ G +  G +G+ +     A+I V  
Sbjct: 296 TGLHPVAVLFAVLTGGQFFGFMGVLLALPCAAVINVFL 333


>gi|228910226|ref|ZP_04074044.1| hypothetical protein bthur0013_43740 [Bacillus thuringiensis IBL
           200]
 gi|228923142|ref|ZP_04086433.1| hypothetical protein bthur0011_41220 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228954675|ref|ZP_04116698.1| hypothetical protein bthur0006_40440 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228960662|ref|ZP_04122307.1| hypothetical protein bthur0005_41240 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229048098|ref|ZP_04193671.1| hypothetical protein bcere0027_40710 [Bacillus cereus AH676]
 gi|229071899|ref|ZP_04205110.1| hypothetical protein bcere0025_40660 [Bacillus cereus F65185]
 gi|229081655|ref|ZP_04214150.1| hypothetical protein bcere0023_42850 [Bacillus cereus Rock4-2]
 gi|229111863|ref|ZP_04241409.1| hypothetical protein bcere0018_41070 [Bacillus cereus Rock1-15]
 gi|229129671|ref|ZP_04258639.1| hypothetical protein bcere0015_41130 [Bacillus cereus BDRD-Cer4]
 gi|229146961|ref|ZP_04275325.1| hypothetical protein bcere0012_41000 [Bacillus cereus BDRD-ST24]
 gi|229152594|ref|ZP_04280783.1| hypothetical protein bcere0011_41290 [Bacillus cereus m1550]
 gi|229180666|ref|ZP_04308006.1| hypothetical protein bcere0005_40100 [Bacillus cereus 172560W]
 gi|228602811|gb|EEK60292.1| hypothetical protein bcere0005_40100 [Bacillus cereus 172560W]
 gi|228630855|gb|EEK87495.1| hypothetical protein bcere0011_41290 [Bacillus cereus m1550]
 gi|228636560|gb|EEK93026.1| hypothetical protein bcere0012_41000 [Bacillus cereus BDRD-ST24]
 gi|228653788|gb|EEL09658.1| hypothetical protein bcere0015_41130 [Bacillus cereus BDRD-Cer4]
 gi|228671619|gb|EEL26917.1| hypothetical protein bcere0018_41070 [Bacillus cereus Rock1-15]
 gi|228701659|gb|EEL54150.1| hypothetical protein bcere0023_42850 [Bacillus cereus Rock4-2]
 gi|228711195|gb|EEL63159.1| hypothetical protein bcere0025_40660 [Bacillus cereus F65185]
 gi|228723253|gb|EEL74625.1| hypothetical protein bcere0027_40710 [Bacillus cereus AH676]
 gi|228799026|gb|EEM45998.1| hypothetical protein bthur0005_41240 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228805002|gb|EEM51598.1| hypothetical protein bthur0006_40440 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228836521|gb|EEM81871.1| hypothetical protein bthur0011_41220 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228849390|gb|EEM94226.1| hypothetical protein bthur0013_43740 [Bacillus thuringiensis IBL
           200]
          Length = 361

 Score = 89.5 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 112/318 (35%), Gaps = 11/318 (3%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           ++  K    P L A  I +   P+      +            T++++ ++I+    + Y
Sbjct: 42  IFVFKVAITPFLIACFIAYLLHPLIEKIHKEGMPR--------TLAILLIYILFFGGIGY 93

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                   ++ ++   N+      +       G+      T +       K+        
Sbjct: 94  GIYKGTPVVIKQLQEINEQFPQFTKMYDSWMDGVTEQ---TANFPSFIHEKVKQLFVGVE 150

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             I  +           LD  L I  +   +F+  +D          L    +    + +
Sbjct: 151 TKIQALLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRGTGQML 210

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
           ++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI   
Sbjct: 211 AKEIDKSLGSYIRGQLFVCLVLGGVSALSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGA 270

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G    
Sbjct: 271 IPTLMIAATVSTSLLIKAGITIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEVA 330

Query: 324 GLLGLFIGPVLMALIAVI 341
           G++GL I   ++A+I  +
Sbjct: 331 GIVGLLISVPILAVIRTV 348


>gi|319408624|emb|CBI82279.1| permease protein [Bartonella schoenbuchensis R1]
          Length = 403

 Score = 89.5 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 51/322 (15%), Positives = 110/322 (34%), Gaps = 19/322 (5%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P ++ +++ +   PI    + K      F  ++ T+ ++ +F+  L  L      +++
Sbjct: 70  LLPFVAGIVLAYFLNPIVQ-LLEKVGIRRVFGTILITLFIVVIFVAALTILIPIVSWQIQ 128

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWAS--ELWTKHLSHPQSLKILSETFLKTNGIDF 148
           + VS           +P ++S I   +  S  +   ++     +        L     DF
Sbjct: 129 QFVSSG---------LPIYVSRIQNFLTESNFDWVGRYFGSDPNELQTDIKVLLGQSSDF 179

Query: 149 IPRFASRF---GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           I    +     G   ++    ++   +  F+   D   + + +DS          + I  
Sbjct: 180 ITSLLNSLLRSGKSIVNIFSLLVVAPVVAFYMLLDWQRMVEAVDSWIPRDHLETVRSIFY 239

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP----GGAPIS 261
            + + I     G   + +  G        + G+   + +G+   +++ IP        I 
Sbjct: 240 EMDRAIAGFVRGQGTVCLILGGYYAIGLTITGLNFGLLIGMFVGLISFIPYIGTMSGFIL 299

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
              V+       N      + +   I  FI    L+P LVG  + L  +   F L     
Sbjct: 300 SGGVAWVQFYPDNWSRIVIVMVVFFIGQFIEGYILQPKLVGSSVGLHPVWLMFALFAFGS 359

Query: 322 TMGLLGLFIGPVLMALIAVIWK 343
             G  G+ +     A I V+ +
Sbjct: 360 LFGFTGMLVAVPASAAIGVLVR 381


>gi|326776925|ref|ZP_08236190.1| protein of unknown function UPF0118 [Streptomyces cf. griseus
           XylebKG-1]
 gi|326657258|gb|EGE42104.1| protein of unknown function UPF0118 [Streptomyces cf. griseus
           XylebKG-1]
          Length = 471

 Score = 89.5 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 47/319 (14%), Positives = 110/319 (34%), Gaps = 21/319 (6%)

Query: 17  MFIILVSLYFLKGFFAPV-------LSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           + ++  +L+ L    + V        +AL++     P       +          +  V 
Sbjct: 87  LLVLAGTLWVLMRVISAVQLVVLAFAAALLVTAMLQPTVVRL-RRFGLPHGLATAVTAVL 145

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              +  +   F+ +  M  +  L  +V         + RW  D P  +  S++       
Sbjct: 146 GFVIIGLVGWFVVWQVMDNLDTLSDRVRDGIDE---LKRWALDSPFHVTESQI------- 195

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              +       + TN  + I     +   + +++   ++  + +  F   DG  I +   
Sbjct: 196 -NDIAKNLSDTIGTNTEE-ITSAGLQGVTVMVEFLTGLLLAMFSTLFLLYDGRRIWEWSL 253

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L                 + + +   G  ++A+ + + +G   ++  VP  V L V   
Sbjct: 254 KLVPAAARPGVAGAGPRAWRTLTAYVRGTVLVALIDAIFIGFGLYVLNVPLAVPLAVFIF 313

Query: 250 IMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           + A IP    +   A+++ + L+   ++ A    +       I    L+PF++G  +++ 
Sbjct: 314 LFAFIPLVGAVVSGALAVVVALVTEGVWTALWALVVVLAVQQIEGHILQPFILGRAVRVH 373

Query: 309 FLPTFFGLVGGVRTMGLLG 327
            L     +  G    G+ G
Sbjct: 374 PLAVVLAVATGGLVAGIGG 392


>gi|289577289|ref|YP_003475916.1| sporulation integral membrane protein YtvI [Thermoanaerobacter
           italicus Ab9]
 gi|289527002|gb|ADD01354.1| sporulation integral membrane protein YtvI [Thermoanaerobacter
           italicus Ab9]
          Length = 354

 Score = 89.5 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 57/354 (16%), Positives = 121/354 (34%), Gaps = 11/354 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M   +     I + +++  + +  Y     +  F  P + ALI      P  +    K +
Sbjct: 1   MNNYLKYSNIIKKIILIVSVFIIFYLVIFKIIPFLMPFVVALIFAVIIDPGVNFLEKKLK 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVS-KVVLANQHGIPVPRWLSDIPG 115
                 + I  + ++ +    +       + E+  L       AN     +   +  I  
Sbjct: 61  VPRGLASFILLLILIGVIGSLIAITVTQLIYELSSLAEISTNYANTINDAILNLVDRI-- 118

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
                     +++      + S     +     +  +   F     ++    +  ++A F
Sbjct: 119 -RTYYISLPPNITSLIESNMHSILNYISLFAKNLATWLLNFATKLPNFFFMTLITLVATF 177

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F  +D   I   +       +  + K I   + K        +  I +   L +     +
Sbjct: 178 FISKDKNLILDFIKRQIPSHWAQHAKNIQIDLLKTFFGYLRAVAAIMLITFLEVSIGLVI 237

Query: 236 AGVPSHVALGVITAIMAMIPG-GAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVD 293
            G      LG+   I+  +P  G+       ++Y ++I  N      L +   + + +V 
Sbjct: 238 IGFDYPFLLGLFVTIVDALPVLGSGSVMIPWALYNIIIIKNYMVGIYLLILYILVV-VVR 296

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           + + P +VG  I L  L T   +  GV+  G LGL IGPV + +   + +  I+
Sbjct: 297 QMIEPKIVGQSIGLHPLVTLLSMFIGVKLFGALGLIIGPVFVVVFKALQRAEII 350


>gi|229175064|ref|ZP_04302582.1| hypothetical protein bcere0006_41460 [Bacillus cereus MM3]
 gi|228608432|gb|EEK65736.1| hypothetical protein bcere0006_41460 [Bacillus cereus MM3]
          Length = 361

 Score = 89.5 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 114/318 (35%), Gaps = 11/318 (3%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           ++  K    P L A  I +   P+      +            T++++ ++I+    + Y
Sbjct: 42  IFVFKVAITPFLIACFIAYLLHPLIEKIHKEGMPR--------TLAILLIYILFFGGIGY 93

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                   ++ ++   N+      +       G+           H +  +I      K 
Sbjct: 94  GIYKGTPVVIKQLQEINEQFPQFTKMYDSWMDGVTEQTANFPSFIHEKVKQIFDGVETK- 152

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             I  +           LD  L I  +   +F+  +D          L    + +  + +
Sbjct: 153 --IQSLLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQML 210

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
           ++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI   
Sbjct: 211 AKEIDKSLGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGA 270

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G    
Sbjct: 271 IPTLMIAATVSTSLLIKAGITIAILQFLESNILSPYIVGKSLRMHPVIIMLALLVGGEIA 330

Query: 324 GLLGLFIGPVLMALIAVI 341
           G++GL I   ++A+I  +
Sbjct: 331 GIVGLLISVPILAVIRTV 348


>gi|163942140|ref|YP_001647024.1| hypothetical protein BcerKBAB4_4237 [Bacillus weihenstephanensis
           KBAB4]
 gi|163864337|gb|ABY45396.1| protein of unknown function UPF0118 [Bacillus weihenstephanensis
           KBAB4]
          Length = 355

 Score = 89.5 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 114/318 (35%), Gaps = 11/318 (3%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           ++  K    P   A  I +   P+      +            T++++ ++I+    + Y
Sbjct: 36  IFVFKVAITPFFIACFIAYLLHPLIEKIHKEGMPR--------TLAILLIYILFFGGIGY 87

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                   ++ ++   N+      +       G+           H +  +I      K 
Sbjct: 88  GIYKGTPVVIKQLQEINEQFPQFTKMYDSWMDGVTEQTANFPSFIHEKVKQIFGGVETK- 146

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             I  +           LD  L I  +   +F+  +D          L    + +  + +
Sbjct: 147 --IQALLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQML 204

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
           ++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI   
Sbjct: 205 AKEIDKSLGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGA 264

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++ +    +        +  AI  F+    L P++VG  +++  +   F L+ G    
Sbjct: 265 IPTLMIAATVSTSLLIKAGITIAILQFLESNILSPYIVGKSLRMHPVIIMFALLVGGEVA 324

Query: 324 GLLGLFIGPVLMALIAVI 341
           G++GL I   ++A+I  +
Sbjct: 325 GIVGLLISVPILAVIRTV 342


>gi|168487562|ref|ZP_02712070.1| transport protein [Streptococcus pneumoniae CDC1087-00]
 gi|183569624|gb|EDT90152.1| transport protein [Streptococcus pneumoniae CDC1087-00]
          Length = 388

 Score = 89.5 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 51/335 (15%), Positives = 109/335 (32%), Gaps = 5/335 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    L FL     PV+ + ++ +   PI       K      +  I  V +    I
Sbjct: 42  ISFLFSPVLDFLAVVMLPVILSGLLYYLLNPIVDWMEKHKVNRVIVI-TIVFVIIALFII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      V +     +     + +        + +   L    +   
Sbjct: 101 WGLAVAIPNLQRQVLTFARNVPVY----LEDIDRIVNGLVAQHLPDDFRPQLEQVLTNFS 156

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T L +        + S F        +++I +   LF+  RDG  +   L       
Sbjct: 157 SQATVLASKVSSQAVNWVSAFISGASQVIVALIIVPFMLFYLLRDGKGLRNYLTQFIPRK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   V + + +   G   +AI   ++    + + G+   V LGV   I+ ++P
Sbjct: 217 LKEPVGQVLSDVNQQLSNYVRGQVTVAIIVAVMFIIFFKIIGLRYAVTLGVTAGILNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPVMLLKVVIVFIVEQTIEGRFVSPLILGSQLNIHPINVLFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+      G+ G+ +G  + A   V+        K
Sbjct: 337 LLTSGSMFGIWGVLLGIPVYASAKVVISAIFEWYK 371


>gi|319946630|ref|ZP_08020864.1| membrane protein [Streptococcus australis ATCC 700641]
 gi|319746678|gb|EFV98937.1| membrane protein [Streptococcus australis ATCC 700641]
          Length = 396

 Score = 89.5 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 43/321 (13%), Positives = 104/321 (32%), Gaps = 5/321 (1%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             PV+ + ++ +   PI       + +       I  + +  L +  L         ++ 
Sbjct: 64  MLPVIISGLLYYLLNPIVDFLERHRVKR-IIAISIVFILIALLILWGLAVAIPAIQRQVL 122

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
             +  +    +          D            +  S          +      ++++ 
Sbjct: 123 SFMKNLPDYLEKANMTIDDFLDNKVSPEIKPQLDEWTSQLSENITSWASSFSARAVNWVS 182

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              +    +     +++I M   +F+  RDG ++  Q+             K+   V   
Sbjct: 183 NLIAVASQV----IIALIIMPFIVFYLLRDGKNLKGQIIRFLPTKIRESAGKVLSDVNTQ 238

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + +   G   +AI   L+    + + G+   V LGV    + +IP          ++ L 
Sbjct: 239 LANYVRGQITVAIIVALMFILLFKIIGLRYGVTLGVTAGFLNLIPYLGSFLAMLPALVLG 298

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +         + +   +E  I  + + P ++G  + +  +   F L+      G+ G+F+
Sbjct: 299 LVAGPEMFVKVVIVFIVEQTIEGRFVSPLVLGSQLNIHPITILFVLITSGSMFGIWGVFL 358

Query: 331 GPVLMALIAVIWKESIMAIKE 351
           G  + A   V+        K+
Sbjct: 359 GIPVYASAKVVISALFEWYKD 379


>gi|323702193|ref|ZP_08113860.1| protein of unknown function UPF0118 [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532880|gb|EGB22752.1| protein of unknown function UPF0118 [Desulfotomaculum nigrificans
           DSM 574]
          Length = 343

 Score = 89.5 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 48/334 (14%), Positives = 124/334 (37%), Gaps = 11/334 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT- 67
           + +   +I+ +++  LY ++G F P + A+++ +   P+          SS   A++   
Sbjct: 11  RILFIALIIGVVIYFLYLIRGLFLPFILAIVLVYLLNPLVDRME--CRGSSRVAAILILY 68

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + V+ +    L++     + ++++L++ + + +     +   +              + +
Sbjct: 69  LGVIIIVTSLLMYGVPRIINQLEKLLTTIPIYSSQVEDMVNRIQQRFADSTVPPGIQQIV 128

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +        +     D +    S           +I    +  F+  +D   I  +
Sbjct: 129 DERINWAEARLLEIVRTAADLLLALVSN--------LFNIALAPVLAFYIMKDLQYIKGR 180

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
             +L      +   +++R +  VI +   G  I+     ++   A  L G+      G+I
Sbjct: 181 GATLIPPRCFSDTCRLAREIDHVIANFVRGHLIVVAIVTVLTSLALALVGLEFAAMFGII 240

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  +IP   P       + L +  + + A  + +   I   +    + P ++G  + L
Sbjct: 241 AGLAELIPYFGPFIGAVPPVALALLQSKWLALKVIVALFIVQQLEGNIISPKILGDSVGL 300

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             L     L+ G +  GL G+ +   L A+  ++
Sbjct: 301 HPLTIIIALLAGGQLFGLAGMLLAVPLTAIARIL 334


>gi|312198923|ref|YP_004018984.1| hypothetical protein FraEuI1c_5125 [Frankia sp. EuI1c]
 gi|311230259|gb|ADP83114.1| protein of unknown function UPF0118 [Frankia sp. EuI1c]
          Length = 432

 Score = 89.5 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 54/323 (16%), Positives = 113/323 (34%), Gaps = 14/323 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           ++++++++  ++    PV++ L+I     PI      +        A +A ++   +   
Sbjct: 95  VYVVVIAIGRVRSIVIPVVAGLLISALIVPIAQRL-QRVGVPRLASAFLALLTFFVILGG 153

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             + + +    E+  +V +V   N     V  +L++ P  +   ++     S   SL   
Sbjct: 154 VAVGVGFNAANELPTVVDQV---NNGIGQVRDYLTNGPLHLSQKQITDLIDSVQHSL--- 207

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                 T     +         + ++   S++  + A FFF  DG  I   + S      
Sbjct: 208 ------TANRGKVVSQVITTASVLVEVLASLLVTVFATFFFVYDGAGIWNWIVSRFPPSA 261

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
               +   R     +     G  +IA  + L +       G P    L ++T     IP 
Sbjct: 262 EERVRGAGREAWATLTGYIRGTVLIAFTDALGISIGLVSVGTPLVAPLALLTFFGGFIPI 321

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            GA ++ TA  +  L+   +  A  +     +        + P ++   + L  L     
Sbjct: 322 VGATVAGTAAVLVTLVAKGLVPAIIVLCVVVVVQQFEGHVMHPLVMRRAVNLHPLAIVIS 381

Query: 316 LVGGVRTMGLLGLFIGPVLMALI 338
           L  G    G+ G       +A+I
Sbjct: 382 LSAGAVLAGIPGAIAAVPTVAVI 404


>gi|300859323|ref|YP_003784306.1| hypothetical protein cpfrc_01906 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686777|gb|ADK29699.1| putative membrane protein [Corynebacterium pseudotuberculosis
           FRC41]
 gi|302207004|gb|ADL11346.1| Putative integral membrane protein [Corynebacterium
           pseudotuberculosis C231]
 gi|308277257|gb|ADO27156.1| Putative integral membrane protein, predicted permease
           [Corynebacterium pseudotuberculosis I19]
          Length = 453

 Score = 89.5 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 48/302 (15%), Positives = 97/302 (32%), Gaps = 14/302 (4%)

Query: 43  TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH 102
             WP      SKK        +I  +            +      + K+LV +     Q 
Sbjct: 97  VLWPPVRWLRSKKVP-PATAVLIVAIGFFGAIGSIFAAMAPSVSSQSKDLVDRANEGVQR 155

Query: 103 GIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD 162
            +    W    P  +  S++     +  Q+L+  S               +    +I + 
Sbjct: 156 AL---HWAEHGPLNLDTSQVDGYIQNVTQALQEHSRNIANGVFSGLTTASSILITIILML 212

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
                       FFF +DG      +  +       +  ++   +  V+        I++
Sbjct: 213 IL---------SFFFLKDGTRFLPMVRRVAGPNLGWHLTEVLTRIWNVLAGFIRAQAIVS 263

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCL 281
           + + +++G    +  VP  + L V+T     IP  GA  +     +  L+   + NA   
Sbjct: 264 LVDAVLIGIGLLILKVPLALVLAVLTFFGGFIPIVGAFTAGALAVVIALVSNGVSNAIFA 323

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            +       I    L+P L    + L        +  G     ++G F+   + A +AV+
Sbjct: 324 LILIITVQQIEGHILQPVLQSRAMNLHAAVVLLSVTIGSALFSVVGAFLAVPVAATLAVL 383

Query: 342 WK 343
            +
Sbjct: 384 IR 385


>gi|293365292|ref|ZP_06612009.1| membrane protein [Streptococcus oralis ATCC 35037]
 gi|307703832|ref|ZP_07640773.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
 gi|291316742|gb|EFE57178.1| membrane protein [Streptococcus oralis ATCC 35037]
 gi|307622667|gb|EFO01663.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
          Length = 388

 Score = 89.5 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 55/336 (16%), Positives = 116/336 (34%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI L  L FL     PV+ + ++ +   PI       K         I  V +    I
Sbjct: 42  ISFIFLPVLDFLGVVMLPVILSGLLYYLLNPIVDWMEKHKINR-VLAISIVFVIIGLFII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      V    +    V   L              + LS+  S   
Sbjct: 101 WGLAVAIPNLQRQVLNFAKNVPTYLEDADKVINDLVTKRLPDDFRPQLEQVLSNVSSEAT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +  + + +  ++++  F S    +     +++I +   LF+  RDG  +   L     + 
Sbjct: 161 MWASKISSQAVNWVSAFISSVSQV----IVAVIIVPFMLFYLLRDGKGLRDYLTKFIPNK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   V K + +   G   +AI   ++    + + G+   V LG+   I+ ++P
Sbjct: 217 LKEPVGQVLSDVNKQLSNYVRGQVTVAIIVAIMFIIFFKIIGLRYAVTLGITAGILNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPVMLLKVIIVFIVEQTIEGRFVSPLILGSQLNIHPINVLFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      G+ G+ +G  + A   V+        K+
Sbjct: 337 LLTSGSMFGIWGVLLGIPVYASAKVVISAIFNWYKK 372


>gi|261209281|ref|ZP_05923673.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289567000|ref|ZP_06447401.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|293553987|ref|ZP_06674589.1| transport protein [Enterococcus faecium E1039]
 gi|294615275|ref|ZP_06695152.1| transport protein [Enterococcus faecium E1636]
 gi|294617337|ref|ZP_06696976.1| transport protein [Enterococcus faecium E1679]
 gi|260076827|gb|EEW64562.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289161201|gb|EFD09100.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|291591872|gb|EFF23504.1| transport protein [Enterococcus faecium E1636]
 gi|291596410|gb|EFF27664.1| transport protein [Enterococcus faecium E1679]
 gi|291601844|gb|EFF32094.1| transport protein [Enterococcus faecium E1039]
          Length = 379

 Score = 89.5 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 54/320 (16%), Positives = 113/320 (35%), Gaps = 15/320 (4%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L   F P+L A  I +   PI       +               +  F+V ++ +    
Sbjct: 40  MLSAIFLPLLVAGFIYYMFDPIVVFLEKHRIPR--------VFGFLLTFLVVIILVVLTV 91

Query: 86  MLEMKELVSKVVLANQHGIPVPR----WLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
           M  + +L+ + +   Q           WL+++       E    +L    +   LS + L
Sbjct: 92  MNVVPQLMEQTIQLTQSLPTYADETSKWLNEL---AQREEFKNFNLEEQLASANLSLSNL 148

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
               +  +    S+     + + + +  +   L F ++DG      L            +
Sbjct: 149 FNIILVSLSASVSKIISFMMQFFILLFTVPFILLFMFKDGHKFIDALSHFFPKAIRKELR 208

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +  + + + + +      + A+  G++   A  +   P  + L VI  I  +IP   P  
Sbjct: 209 QTVKELNETLSAYISSTILDALIIGVMSFLAMRIFDQPYSLLLAVICGITNIIPYVGPFI 268

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               +I + +  + F A  + L   +   +    ++P L G  + +  L     L+G   
Sbjct: 269 GAVPAIIVGLFISPFQALYMALSILVIQQLDGNLIKPLLFGKSMNIHPLTIILVLIGAGS 328

Query: 322 TMGLLGLFIGPVLMALIAVI 341
             G+LG+ I   + A+I  I
Sbjct: 329 VAGILGMLICIPVYAVIKTI 348


>gi|297379768|gb|ADI34655.1| membrane protein [Helicobacter pylori v225d]
          Length = 349

 Score = 89.5 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 137/363 (37%), Gaps = 25/363 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  Q     + +      +Y  + F    L A ++    + +      +        + +
Sbjct: 1   MKAQYFFWILFLIGFYWMIYLYQDFLMDALIAGLLCVGFFQVKVFLDKRFFN--IVSSFL 58

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +  + IVPL F+ Y     + E+        +    + +WL  I      +E  + 
Sbjct: 59  CVLILASVLIVPLYFIVYKSSNIIFEI------NFEKFSALIKWLKGI-----ITENLSH 107

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +    +    E F   +   ++ + +S  G   L      +F++  LFFF+  G    
Sbjct: 108 FPTIHDGVSKFLENFNAASITGYLLKISSYVGKYSLKLITDALFILGLLFFFFYYGEKFY 167

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +   L     KKI   V  ++R   L   I  I EG+  G      G      LG
Sbjct: 168 RYFLGVLP-LGINQSKKIFEEVAGILRIVLLTSLITVILEGVAFGLMIVWFGHDGWS-LG 225

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLV-- 301
           ++  + +++P  G  + +  ++IY L  G++  A  + L+  + +  ++D  ++P L+  
Sbjct: 226 ILYGLASLVPAVGGALIWIPIAIYELYHGHVNEAIFIALYSILLISVLIDSVIKPILIVF 285

Query: 302 ------GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                    +K+  +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 286 IKKRIFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345

Query: 356 ISS 358
              
Sbjct: 346 ACE 348


>gi|184155884|ref|YP_001844224.1| hypothetical protein LAF_1408 [Lactobacillus fermentum IFO 3956]
 gi|183227228|dbj|BAG27744.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
          Length = 369

 Score = 89.5 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 52/346 (15%), Positives = 124/346 (35%), Gaps = 10/346 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS----KKEESSTFLAVIATVSVMCL 73
           F+    L F+     P++ +L + +   P++   +     K        +++  + ++ +
Sbjct: 30  FVFTPLLVFVSVVITPLVISLFLYYMLNPLFRLLMKIRIYKWHMKRGIASLVVVIGLVLI 89

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +  +  L    + E+ +++  +  A +    + + +S+ P  +          ++   +
Sbjct: 90  VVGGISALIPSVLNELNQVIHWLPQAAKESQKMIQEISEHPWVLKL-----HLSTYYGQI 144

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                 +++           S  G I     ++I    + LF+ ++DG  +   +  L  
Sbjct: 145 NDQVSKYVRQIVTGLTSSAGSIIGTITSTVIVAITV-PVMLFYMFKDGNRLVPSVQKLFP 203

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   ++ R + + + S   G  I  +   +     Y + G P  V LGV+  I  M
Sbjct: 204 ENSRDEVGELLRKMSQTLSSYISGQAIECLFVAIATSIGYLIIGQPLAVVLGVVAGIANM 263

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P      S+ + I         + +   I   I    + P ++G  +++  L   
Sbjct: 264 IPYVGPYIGITPSLMVSIAVAPEKIVWVIVVVVIVQQIDGNIIYPNIIGKTLQIHPLTII 323

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             L+      G+ G+ +     A++  I    I      K +  +N
Sbjct: 324 MLLLAAGNIAGIPGMILCIPCYAVVKTIVTYLISIYHLRKREGDNN 369


>gi|220921717|ref|YP_002497018.1| hypothetical protein Mnod_1725 [Methylobacterium nodulans ORS 2060]
 gi|219946323|gb|ACL56715.1| protein of unknown function UPF0118 [Methylobacterium nodulans ORS
           2060]
          Length = 680

 Score = 89.5 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 58/356 (16%), Positives = 114/356 (32%), Gaps = 30/356 (8%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            ++  II+ +LYF +    P+  A+++ F  WP+    + +     T    +A V+ + +
Sbjct: 33  LLVAAIIVAALYFGREILIPIAIAVLLSFVLWPL-VGLLRRLPIGRTAAIGLAVVTCIGI 91

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT--KHLSHPQ 131
                  L     +++ +L + +    +        L + P G  A  + +  +HL    
Sbjct: 92  V----GLLAGVIGMQVADLGTGLPRYQRTIERKLENLKEGPVGSIAGYMRSIGRHLQQAG 147

Query: 132 SLKILSETFLKTNGIDFIPR---------------------FASRFGMIFLDYCLSIIFM 170
           S+    +      G    PR                      A R     L    +   +
Sbjct: 148 SMPEDKDKPPVPRGATSEPRVQNPDKPVLVEVRERDLAPVELAERLLSPVLAPLATTGIV 207

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
            + L F       +  +L  L                 + +   FL    +    G+ +G
Sbjct: 208 FVVLMFILAQREDLRDRLIRLAGSSDLHRTTVAMDDAARRLSRFFLVQLGLNASFGVAIG 267

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
              WL GVPS +  G+ +A+M  +P         + + L    +      L       + 
Sbjct: 268 IGLWLIGVPSPILWGIFSALMRFVPYIGAFLSALLPLALAAAVDPGWNMVLATAALFLVL 327

Query: 291 --IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             +V   + P L G    L         +      G +GL +   L   + V+ + 
Sbjct: 328 EPLVGHVIEPLLYGHSTGLSPFAVLVSALFWTWLWGPVGLLLSTPLTVCLVVLGRH 383


>gi|315613061|ref|ZP_07887972.1| membrane protein [Streptococcus sanguinis ATCC 49296]
 gi|315315171|gb|EFU63212.1| membrane protein [Streptococcus sanguinis ATCC 49296]
          Length = 388

 Score = 89.5 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 55/336 (16%), Positives = 116/336 (34%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI L  L FL     PV+ + ++ +   PI       K         I  V +    I
Sbjct: 42  ISFIFLPVLDFLGVVMLPVILSGLLYYLLNPIVDWMEKHKINR-VLAISIVFVVIGLFII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      V    +    V   L              + LS+  S   
Sbjct: 101 WGLAVAIPNLQRQVLNFAKNVPTYLEDADKVINDLVTKRLPDDFRPQLEQVLSNVSSEAT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +  + + +  ++++  F S    +     +++I +   LF+  RDG  +   L     + 
Sbjct: 161 MWASKISSQAVNWVSAFISSVSQV----IVAVIIVPFMLFYLLRDGKGLRDYLTKFIPNK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   V K + +   G   +AI   ++    + + G+   V LG+   I+ ++P
Sbjct: 217 LKEPVGQVLSDVNKQLSNYVRGQVTVAIIVAIMFIIFFKIIGLRYAVTLGITAGILNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPVMLLKVIIVFIVEQTIEGRFVSPLILGSQLNIHPINVLFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      G+ G+ +G  + A   V+        K+
Sbjct: 337 LLTSGSMFGIWGVLLGIPVYASAKVVISAIFNWYKK 372


>gi|253577293|ref|ZP_04854611.1| sporulation integral membrane protein YtvI [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251843297|gb|EES71327.1| sporulation integral membrane protein YtvI [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 372

 Score = 89.5 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 47/349 (13%), Positives = 116/349 (33%), Gaps = 12/349 (3%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +++ + ++++Y+L     P L A +I +   P+   F    +        ++    +   
Sbjct: 17  IVLIVSVLAIYWLLPLGYPFLIAWLIAYAMNPLVLWFQRHLQVPKWLAVTLSLFIYVGSA 76

Query: 75  IVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            + +       + E+            +    +  W          +E+      +P   
Sbjct: 77  GIIVSAALTRLVKELIHFAESFDHRIAEWRNLLISWTQSEGIQSIITEINRFIADNPGYE 136

Query: 134 KILSETFLKTN---------GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             + +    T           I+ +            +  + +  +++A FF        
Sbjct: 137 NTIHKNIDNTAERFGSFVSRLINHVLETIVNLLSSLPNLGVILGVILLATFFISNHWERD 196

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + L +     F      I R + + +        I+      ++     + GV S    
Sbjct: 197 MRFLAASVPAPFRKTVGAIWRDLQRALSGYLRAQFIMISITAFIVLIGLLILGVDSAFTY 256

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            ++  ++ ++P  G         IY    G+      L +   + L +  + + P ++  
Sbjct: 257 ALLIGLVDLLPYLGVGTVMIPWLIYAFATGHDTLGIGLAVLYGVIL-LARQLIEPKVLAS 315

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            + L  LPT   +  G++  G+LGL IGPV + ++    +  ++    N
Sbjct: 316 SVGLDPLPTLIAMFVGLKLFGVLGLIIGPVTLVILGAAVRAGVVRDLRN 364


>gi|326942172|gb|AEA18068.1| hypothetical protein CT43_CH4407 [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 355

 Score = 89.5 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 112/318 (35%), Gaps = 11/318 (3%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           ++  K    P L A  I +   P+      +            T++++ ++I+    + Y
Sbjct: 36  IFVFKVAITPFLIACFIAYLLHPLIEKIHKEGMPR--------TLAILLIYILFFGGIGY 87

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                   ++ ++   N+      R       G+      T +       K+        
Sbjct: 88  GIYKGTPVVIKQLQEINEQFPQFTRMYDSWMDGVTEQ---TANFPSFIHEKVKQLFVGVE 144

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             I  +           LD  L I  +   +F+  +D          L    +    + +
Sbjct: 145 TKIQALLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRGTGQML 204

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
           ++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI   
Sbjct: 205 AKEIDKSLGSYIRGQLFVCLVLGGVSALSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGA 264

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G    
Sbjct: 265 IPTLMIAATVSTSLLIKAGITIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEVA 324

Query: 324 GLLGLFIGPVLMALIAVI 341
           G++GL I   ++A+I  +
Sbjct: 325 GIVGLLISVPILAVIRTV 342


>gi|331266486|ref|YP_004326116.1| conserved hypothetical protein, permease,putative [Streptococcus
           oralis Uo5]
 gi|326683158|emb|CBZ00776.1| conserved hypothetical protein, permease,putative [Streptococcus
           oralis Uo5]
          Length = 388

 Score = 89.5 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 56/336 (16%), Positives = 116/336 (34%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI L  L FL     PV+ + ++ +   PI       K         I  V +    I
Sbjct: 42  ISFIFLPVLDFLGVVMLPVILSGLLYYLLNPIVDWMEKHKINR-VLAISIVFVIIGLFII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      V    +    V   L              + LS+  S   
Sbjct: 101 WGLAVAIPNLQRQVLNFAKNVPTYLEDADKVINDLVTKRLPDDFRPQLEQVLSNVSSEAT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +  + + +  ++++  F S    +     +++I +   LF+  RDG  +   L     + 
Sbjct: 161 MWASKISSQAVNWVSAFISSVSQV----IVAVIIVPFMLFYLLRDGKGLRDYLTKFIPNK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   V K + +   G   +AI   ++    + + G+   V LG+   I+ ++P
Sbjct: 217 LKEPVGQVLSDVNKQLSNYVRGQVTVAIIVAIMFIIFFKIIGLRYAVTLGITAGILNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   IE  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPVMLLKVIIVFIIEQTIEGRFVSPLILGSQLNIHPINVLFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      G+ G+ +G  + A   V+        K+
Sbjct: 337 LLTSGSMFGIWGVLLGIPVYASAKVVISAIFNWYKK 372


>gi|317473090|ref|ZP_07932389.1| sporulation integral membrane protein YtvI [Anaerostipes sp.
           3_2_56FAA]
 gi|316899428|gb|EFV21443.1| sporulation integral membrane protein YtvI [Anaerostipes sp.
           3_2_56FAA]
          Length = 381

 Score = 89.5 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 55/340 (16%), Positives = 126/340 (37%), Gaps = 8/340 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           ++++F++   + FL  F    ++A I+   + P+ +    K      F + +  ++V+  
Sbjct: 11  FLLIFVLPKCIGFLWPF----VAAWIVAMLAHPVIAFLEDKISLPKRFGSALIIIAVIAG 66

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            I  + F+      ++    + +    +        L +    +  S  +   +     L
Sbjct: 67  LIALISFIVSQLAAQIVGFAANLPDLRETVQTQLMNLKEQAVHLLDSLPYGMGVKFDTML 126

Query: 134 KILSETFLK--TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
               +   K  +   ++    +           +  + M  A + F  D   I Q  +  
Sbjct: 127 GSTDKVLDKAVSAIGNYGMEHSGNVAKGMTSGFIGTVVMFFASYLFIVDKDKIVQGYEKH 186

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              +              V+ S       I +    +L   + LAG+     L V+ AI+
Sbjct: 187 VPKMVRHKIGIFYHNTLGVLASYCWAQVKIMVIIVAILWIGFILAGISYAFFLAVVIAIL 246

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            ++P  G   +    ++Y ++ G+I  A  L +   I L    + L+P ++G  + +  L
Sbjct: 247 DVLPILGTGTAIIPWALYKILTGDIKTAIILLIIYVICLVTK-QVLQPKMMGDSMGISPL 305

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            T F +  G++  G+ G+ +  +L   +  ++K  I   K
Sbjct: 306 ATLFLIYIGLKLSGIGGMLLALILGIFVYNLYKLGIFDRK 345


>gi|229032040|ref|ZP_04188023.1| hypothetical protein bcere0028_40850 [Bacillus cereus AH1271]
 gi|228729285|gb|EEL80279.1| hypothetical protein bcere0028_40850 [Bacillus cereus AH1271]
          Length = 361

 Score = 89.5 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 113/318 (35%), Gaps = 11/318 (3%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           ++  K    P L A  I +   P+      +            T++++ ++I+    + Y
Sbjct: 42  IFVFKVAITPFLIACFIAYLLHPLIEKIHKEGMPR--------TLAILLIYILFFGGIGY 93

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                   ++ ++   N+      +       G+      T +       K+        
Sbjct: 94  GIYKGTPVVIKQLQEINEQFPQFTKMYDSWMDGVTEQ---TANFPSFIHEKVKQIFVGVE 150

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             I  +           LD  L I  +   +F+  +D          L    + +  + +
Sbjct: 151 TKIQSLLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQML 210

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
           ++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI   
Sbjct: 211 AKEIDKSLGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGA 270

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G    
Sbjct: 271 IPTLMIAATVSTSLLIKAGITIAILQFLESNILSPYIVGKSLRMHPVIIMLALLVGGEIA 330

Query: 324 GLLGLFIGPVLMALIAVI 341
           G++GL I   ++A+I  +
Sbjct: 331 GIVGLLISVPILAVIRTV 348


>gi|229163339|ref|ZP_04291291.1| hypothetical protein bcere0009_41050 [Bacillus cereus R309803]
 gi|228620120|gb|EEK76994.1| hypothetical protein bcere0009_41050 [Bacillus cereus R309803]
          Length = 361

 Score = 89.5 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 114/318 (35%), Gaps = 11/318 (3%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           ++  K    P L A  I +   P+      +            T++++ ++I+    + Y
Sbjct: 42  IFVFKVAITPFLIACFIAYLLHPLIEKIHKEGMPR--------TLAILLIYILFFGGVGY 93

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                   ++ ++   N+      +       G+           H +  +I      K 
Sbjct: 94  GIYKGTPVVIKQLQEINEQFPQFTKMYDSWMDGVTEQTANFPSFIHEKVKQIFGGVETK- 152

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             I  +           LD  L I  +   +F+  +D          L    + +  + +
Sbjct: 153 --IQALLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQML 210

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
           ++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI   
Sbjct: 211 AKEIDKSLGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGA 270

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G    
Sbjct: 271 IPTLMIAATVSTSLLIKAGITIAILQFLESNILSPYIVGKSLRMHPVIIMLALLVGGEVA 330

Query: 324 GLLGLFIGPVLMALIAVI 341
           G++GL +   ++A+I  +
Sbjct: 331 GIVGLLVSVPILAVIRTV 348


>gi|196044927|ref|ZP_03112161.1| putative membrane protein [Bacillus cereus 03BB108]
 gi|196024415|gb|EDX63088.1| putative membrane protein [Bacillus cereus 03BB108]
          Length = 355

 Score = 89.5 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 113/318 (35%), Gaps = 11/318 (3%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           ++  K    P L A  I +   P+      +            T++++ ++I+    + Y
Sbjct: 36  IFVFKVAITPFLIACFIAYLLHPLIEKIHKEGMPR--------TLAILLIYILFFGGIGY 87

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                   ++ ++   N+      +       G+      T +       K+        
Sbjct: 88  GIYKGTPIVIKQLQEINEQFPQFTKMYDSWMDGVTEQ---TANFPSFIHEKVKQIFVGVE 144

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             I  +           LD  L I  +   +F+  +D          L    + +  + +
Sbjct: 145 TKIQALLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQML 204

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
           ++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI   
Sbjct: 205 AKEIDKSLGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGA 264

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G    
Sbjct: 265 IPALMIAATVSTSLLIKAGITIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEVA 324

Query: 324 GLLGLFIGPVLMALIAVI 341
           G++GL I   ++A+I  +
Sbjct: 325 GIVGLLISVPVLAVIRTV 342


>gi|313887849|ref|ZP_07821529.1| putative membrane protein [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846192|gb|EFR33573.1| putative membrane protein [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 402

 Score = 89.5 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 56/349 (16%), Positives = 108/349 (30%), Gaps = 14/349 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----------EESSTFLAVIATVS 69
           I   L  L G  AP +   +I F      + F  K           +   T    I+ + 
Sbjct: 46  IFSGLGVLLGVIAPFILGGVIAFIMKIPLNFFERKVLDKIKNEKFQKHKRTISIAISFIV 105

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++    +    +    +    EL   +    Q  I   R +  +       +    +LS 
Sbjct: 106 IILAIFIITAIIVPQLINSFNELRKSLPSFLQMAIDKTREIPYLSNYSDKLQAEYDNLSW 165

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            +    +           +I   A       L   +S    +I   +   D   +  Q  
Sbjct: 166 NEIFNRVRSFVKSDEQSSYILNSALSTASSILGGLVSFFLALITSIYILADKERLGYQAT 225

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMT----IIAIGEGLVLGSAYWLAGVPSHVALG 245
            +    F          V  ++   F G       ++   G+       L  +P+   +G
Sbjct: 226 RICYSCFNNKVANKILHVAHLLHENFFGFIRGQLTVSSFIGIATFVCCLLLRIPNAATIG 285

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           VI  +  ++P   P    A++  +++  +        +   I   I    + P LVG  +
Sbjct: 286 VIVGVTDLVPIIGPFIGGAMAFVMIVIEDPTKGLMFIVLILILQQIESNLVYPKLVGNEV 345

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            LP L T   +  G    G++G++    L + +  + KE        K 
Sbjct: 346 GLPSLWTLVAITIGGSLFGVVGMWAFIPLASTLYALMKEYTEYKINEKN 394


>gi|294790628|ref|ZP_06755786.1| putative membrane protein [Scardovia inopinata F0304]
 gi|294458525|gb|EFG26878.1| putative membrane protein [Scardovia inopinata F0304]
          Length = 530

 Score = 89.5 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 49/359 (13%), Positives = 115/359 (32%), Gaps = 24/359 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYF--------LKGFFAPVLSALIIGFTSWPIYSSFISK 54
           ++   P+ + R ++  +I V L          +      ++ +L I     P+    I  
Sbjct: 62  DSRRPPEWLGRGLLYAVIAVFLAIFVWNSWSKISSVVFYIIVSLFIALALEPLILRLIRH 121

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI- 113
                +  +++   S + L +V L       + ++ +++  +          P   SDI 
Sbjct: 122 -GWKRSAASLVVLASFVILVVVFLSMFGLLLVQQLTKMIENL----------PNTYSDIR 170

Query: 114 -PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
                W      K L    +L        K     +I   A      FL   L+I+ +++
Sbjct: 171 RNIISWTGYHLPKKLDFGTNLLSFLNKINKNGAQGYI-SQAYSTVSSFLSGLLAILTILL 229

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
             ++    G  + + L           +  +   V   I +      +++I   + +   
Sbjct: 230 VTYYICAAGPRMRRSLCKWLPRKSQRKFIVVWTTVQTQISNYLYSRFLLSIISAICMSIF 289

Query: 233 YWLAGVPSHVALGVITAIMA-MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
             +  +P  + L +   +++  IP  G  +      +          A  L ++  +   
Sbjct: 290 MIVMKIPYWLPLSIFCGLVSQFIPTIGTYLGGLVPIVSAWGTNGWQYAVYLLIYIVVYQQ 349

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           I +  L P +    + L        +       G LG F+   + A +  +    + + 
Sbjct: 350 IENLILSPRISKDTMDLNPAIALLSVFFFGDLFGALGAFLALPITASLQALLSAYMRSY 408


>gi|314936488|ref|ZP_07843835.1| putative membrane protein [Staphylococcus hominis subsp. hominis
           C80]
 gi|313655107|gb|EFS18852.1| putative membrane protein [Staphylococcus hominis subsp. hominis
           C80]
          Length = 409

 Score = 89.5 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 110/293 (37%), Gaps = 5/293 (1%)

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +++  +F+V +        L +  +  ++     +        +     +    + +  
Sbjct: 95  LLAITIVFLVIIGGATLIIDLLIPVIGDQIKQLANNFPKYIEKFNRAIDKVTHMSILSSF 154

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI----IALFFFYRDGF 182
            +  Q     +   + +   D+   F ++    F +  +++  +I      LFF  +DG 
Sbjct: 155 YNQIQDWLDSTSKKIPSLTSDYFSGFGTKI-RTFAEAVVNVGVVIATTPFVLFFMLKDGT 213

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                   +    F   +  +   +   + S   G  I++   G++L   Y + G+   +
Sbjct: 214 KFRDYTTKIVPPKFRKDYHDLLEKMSVQVGSYIQGQIIVSFCIGILLFIGYSIIGLDYGL 273

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L  I A+ +++P   P    + +I + I  + F    L +   +  FI    + P ++G
Sbjct: 274 VLASIAAVTSVVPYLGPTIAISPAIIIAIITSPFMLLKLIIVWTLVQFIEGHFISPNIMG 333

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             +K+  L   F L+     +G++G+ +G    A++ V+     +  K    K
Sbjct: 334 KTLKIHPLTIIFILLSAGNLLGIVGVILGIPGYAILKVLVSHIFLLFKRRYNK 386


>gi|291449878|ref|ZP_06589268.1| integral membrane protein [Streptomyces albus J1074]
 gi|291352827|gb|EFE79729.1| integral membrane protein [Streptomyces albus J1074]
          Length = 369

 Score = 89.1 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 47/351 (13%), Positives = 114/351 (32%), Gaps = 17/351 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFA---PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
                ++   +  +L+ +   ++   P++  L++   +WP+ + F+          A + 
Sbjct: 21  SAQLLLVAVAVTAALWLVGQMWSVVWPLVVGLLLTTLTWPL-ARFLRNHSWPPALAASVV 79

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           TV  + +    +  +      E   L   V+   +        L     G   +    + 
Sbjct: 80  TVFALVVAAGIVALIAVPVASESGTLADGVIAGVEQ-------LRTWAAGPPLNIGDAEI 132

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                +     ++ L           ++    + +            +FFF +DG     
Sbjct: 133 TKAMDAGIERLQSSLGATVSTVATGLSTVVHGVVVAVIAVF-----LMFFFLKDGPRFLP 187

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L              ++      + +      ++ + + + +G   W+ GVP  + L V
Sbjct: 188 WLTRQLPGRLAVDIPTVAERCWNTLGAFIRSQALVGLIDAVFIGLGLWILGVPLVLPLSV 247

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +T + A +P  GA  +     +  L+   + +A  +     +   +     +P +    +
Sbjct: 248 LTFVGAFVPIVGAFFAGFVAVLIALVSNGLTDALIVLAIIIVVQQLEGNVFQPMIQSRGL 307

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            L        +  G    G++G  +     ALI VIW+     + E   + 
Sbjct: 308 GLHAAVVLLAVTLGGSLAGIVGSLLAVPAAALIGVIWRYIREQLAEPPHEP 358


>gi|226952105|ref|ZP_03822569.1| PerM family permease [Acinetobacter sp. ATCC 27244]
 gi|226837161|gb|EEH69544.1| PerM family permease [Acinetobacter sp. ATCC 27244]
          Length = 398

 Score = 89.1 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 64/338 (18%), Positives = 128/338 (37%), Gaps = 24/338 (7%)

Query: 28  KGFFAPVLSALIIGFTSWPI-----YSSFISKKEESSTFLAVIATVSVMCLFIVPLLF-L 81
           K    P + A +I +   P+               S  F+ +  T++V+  F+ PL++  
Sbjct: 26  KPIVIPFVGAFLIAYFFSPLVDVLVKIKLPRWLAISVVFIGIGVTLTVVLWFLAPLVWKQ 85

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
             Y    +   +  V                +P      +L    +   Q  K++ E   
Sbjct: 86  LIYARDSIPAGIHWVNATF------------LPWMSETFDLVPMEIDTDQISKVVMEYVQ 133

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL---FFFYRDGFSISQQLDSLGEHLFPA 198
                D I  FA R     L++      +I+     F+F  D   + Q L  L    + A
Sbjct: 134 TNYSSDSIQTFALRLAQSGLNFIQIGGIIILIPIISFYFLLDWERMLQSLRRLIPRPYEA 193

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GG 257
              KI R    V+ +   G  ++ +  G++      L G+   + +G++  + ++IP  G
Sbjct: 194 STLKIIRECHSVLGAFVKGQFLVMLLLGVIYAVGLQLIGLEVGLIIGMVAGLASIIPYLG 253

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--DKTLRPFLVGGPIKLPFLPTFFG 315
             +   A  +  L +  +     L +     +  +     L+PFL+G  I L  +   F 
Sbjct: 254 FAVGIIAAVVATLFQFGLDWTQLLLVGAVFLVGQMVEGYILQPFLLGDKIGLSPVAVVFA 313

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           ++ G +  G LG+ I   + A+I V+ + +    ++++
Sbjct: 314 VLAGAQLAGFLGMLIALPVAAVIVVLLRHARDNYEKSR 351


>gi|16079795|ref|NP_390619.1| permease [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310678|ref|ZP_03592525.1| hypothetical protein Bsubs1_14976 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315001|ref|ZP_03596806.1| hypothetical protein BsubsN3_14892 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319922|ref|ZP_03601216.1| hypothetical protein BsubsJ_14803 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324203|ref|ZP_03605497.1| hypothetical protein BsubsS_14947 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321312267|ref|YP_004204554.1| putative permease [Bacillus subtilis BSn5]
 gi|8928489|sp|O34472|YRRI_BACSU RecName: Full=UPF0118 membrane protein yrrI
 gi|2635187|emb|CAB14683.1| putative permease [Bacillus subtilis subsp. subtilis str. 168]
 gi|320018541|gb|ADV93527.1| putative permease [Bacillus subtilis BSn5]
          Length = 353

 Score = 89.1 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 47/330 (14%), Positives = 123/330 (37%), Gaps = 15/330 (4%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
             +K  F P++ ++ I +   P+      K            T+S++ ++++    + + 
Sbjct: 37  LVIKTIFIPLIISIFISYLLLPVTEWLHGKGLPR--------TLSILVIYVLFFGGIGWA 88

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
               +  L+ ++   +++        + +        +       P  +    +  ++  
Sbjct: 89  LYKGVPVLIVQLTDLSENIPMFAETYNGL-----LLHVHNHTDDWPDGMHHRIDKMIRQT 143

Query: 145 GIDFIPRFASRFGM--IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              F              LDY L    +   +F+  +D   + + +  L    +      
Sbjct: 144 EAFFAGTIEGAISGIRNVLDYFLIAATIPFLVFYMVKDIELMKKTVWYLTPKSWRKRGSA 203

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             R V   +     G  ++ +  G++ G ++W+ G+P  + LG+I+ +  +IP   P   
Sbjct: 204 FLRDVDDSLGDYIRGQLLVCLILGVIAGISFWVFGLPYPLILGLISGVTNVIPYFGPFIG 263

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ + +  ++     + +   I  F+    L PF+VG  +K+  +     L+ G   
Sbjct: 264 AVPALLIAMTISVKAVLVVVITVFILQFMEGNILSPFIVGRSLKMHPVVIMLALLAGGEL 323

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            G++G+ +     A++ V+    +    E+
Sbjct: 324 AGIVGMILAVPATAVLKVMMIHFLRMRTEH 353


>gi|163745974|ref|ZP_02153333.1| hypothetical protein OIHEL45_10318 [Oceanibulbus indolifex HEL-45]
 gi|161380719|gb|EDQ05129.1| hypothetical protein OIHEL45_10318 [Oceanibulbus indolifex HEL-45]
          Length = 360

 Score = 89.1 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 51/339 (15%), Positives = 114/339 (33%), Gaps = 14/339 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             + +V+L+F+     P L    I +   P+      +   S      + TV+ + +F++
Sbjct: 16  AAVFMVALWFMGDVLLPFLLGGAIAYFLDPVADRLE-RLGLSRVMATALITVAAILIFVL 74

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             L +    + +   L+       ++           P  +         L+   +    
Sbjct: 75  MALLVVPTLVNQTVNLIETAPQVTRNFTDFIT--DRFPSLLDDDSTLRTSLTTLGTTIQE 132

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               L    +              ++  L  + + +   +   D   +   +D L     
Sbjct: 133 RGGELFQTALASFAS--------LINILLLFVIVPVVAVYLLLDWDRMVAGIDRLLPRDH 184

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               ++++R +   + S   GM  + +  G     A  L G+   + +G I  ++  IP 
Sbjct: 185 APTIRQLAREIDATLASFVRGMGTVCLILGTYYAVALMLVGLQFGLVVGFIAGLVTFIPY 244

Query: 257 GAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
              +   A++I L +    G+  +   +     +   +    L P LVG  + L  +   
Sbjct: 245 LGALIGGALAIGLALFQFWGDWLSIGLVAGIFVLGQIVEGNLLTPKLVGNSVGLHPVWLL 304

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             L       G +GL +   + A I VI + +    +E+
Sbjct: 305 LALSVFGTLFGFVGLLVAVPVAAAIGVIARFATARYRES 343


>gi|75761648|ref|ZP_00741597.1| Hypothetical membrane spanning protein [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228902918|ref|ZP_04067059.1| hypothetical protein bthur0014_40860 [Bacillus thuringiensis IBL
           4222]
 gi|74490869|gb|EAO54136.1| Hypothetical membrane spanning protein [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228856702|gb|EEN01221.1| hypothetical protein bthur0014_40860 [Bacillus thuringiensis IBL
           4222]
          Length = 361

 Score = 89.1 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 49/318 (15%), Positives = 111/318 (34%), Gaps = 11/318 (3%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           ++  K    P L A  I +   P+      +            T++++ ++I+    +  
Sbjct: 42  IFVFKVAITPFLIACFIAYLLHPLIEKIHKEGMPR--------TLAILLIYILFFGGIGC 93

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                   ++ ++   N+      +       G+      T +       K+        
Sbjct: 94  GIYKGTPVVIKQLQEINEQFPQFTKMYDSWMDGVTEQ---TANFPSFIHEKVKQLFVGVE 150

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             I  +           LD  L I  +   +F+  +D          L    +    + +
Sbjct: 151 TKIQALLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRGTGQML 210

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
           ++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI   
Sbjct: 211 AKEIDKSLGSYIRGQLFVCLVLGGVSALSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGA 270

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G    
Sbjct: 271 IPTLMIAATVSTSLLIKAGITIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEVA 330

Query: 324 GLLGLFIGPVLMALIAVI 341
           G++GL I   ++A+I  +
Sbjct: 331 GIVGLLISVPILAVIRTV 348


>gi|317180338|dbj|BAJ58124.1| membrane protein [Helicobacter pylori F32]
          Length = 348

 Score = 89.1 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 65/363 (17%), Positives = 136/363 (37%), Gaps = 25/363 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  Q     + +      +Y  + F   VL A ++    + +      +        + +
Sbjct: 1   MKAQYFFWILFLIGFYWMIYLYQDFLMDVLIAGLLCVGFFQVKVFLDKRFLN--LISSFL 58

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +  + IVPL F+ Y     + E+        +    + +WL         +E  + 
Sbjct: 59  CVLVLASVLIVPLYFIVYKSSNIIFEI------NFEKFSALIKWLKG-----TITENLSH 107

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +         E F   +   ++ + +S  G   L      +F++  LFFF+  G    
Sbjct: 108 FPTIHDGASKFLENFSAASITGYLLKISSYVGRYSLKLITDALFILGLLFFFFYYGERFY 167

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +   L     KKI   V  ++R   L   I  I EG+  G      G      LG
Sbjct: 168 RYFLGVLP-LGMNQSKKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFGHDGWS-LG 225

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLV-- 301
           ++  + +++P  G  + +  ++IY L  GN+  A  + L+  + +  ++D  ++P L+  
Sbjct: 226 ILYGLASLVPAVGGALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVF 285

Query: 302 ------GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                    +K+  +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 286 IKKRIFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345

Query: 356 ISS 358
              
Sbjct: 346 ACE 348


>gi|311743144|ref|ZP_07716952.1| integral membrane protein [Aeromicrobium marinum DSM 15272]
 gi|311313824|gb|EFQ83733.1| integral membrane protein [Aeromicrobium marinum DSM 15272]
          Length = 367

 Score = 89.1 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 49/294 (16%), Positives = 103/294 (35%), Gaps = 10/294 (3%)

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI-PVPRWLSDIPGG 116
                 ++AT+ V  + I  L+ L      ++     ++ ++   G+  +  W    P G
Sbjct: 64  RLGLPRLLATLVVTVVMITGLVGLLVLIGQQLSTQFDELRVSVVDGVGQIEDWARTGPLG 123

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
           +                    +  + +   D     A+  G+    +       + A  F
Sbjct: 124 LS--------DDQISDYVTRVQDAIASTDTDTAIGQATSLGVTLTHFVTGFFIALFAAIF 175

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
           F  +G  I   L +L                 + + S      ++A  + + +     L 
Sbjct: 176 FLYEGDRIWAWLVTLFPRSARGRINSSGHRAWESLTSFVRATMVVAFIDAVGIALVALLL 235

Query: 237 GVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
           GVP  +A+GV+  + A +P  GA +S     +  L+    + A  + L       I    
Sbjct: 236 GVPLALAIGVLVFLGAFVPIVGAFLSGMVAVLVALVAQGPWTALFMLLGVIAVQQIESNV 295

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           L+PF++G  + +  L     +V G+   G++G  +   + A++  + K      
Sbjct: 296 LQPFVMGRLVAVHPLAIILAIVAGITVAGIVGALVAVPIAAMLNGVVKHLAEEA 349


>gi|297567386|ref|YP_003686358.1| hypothetical protein Mesil_3012 [Meiothermus silvanus DSM 9946]
 gi|296851835|gb|ADH64850.1| protein of unknown function UPF0118 [Meiothermus silvanus DSM 9946]
          Length = 369

 Score = 89.1 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 44/333 (13%), Positives = 103/333 (30%), Gaps = 14/333 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
              VL A++  + + PI   F  ++   +  + V+    ++      +            
Sbjct: 41  IVTVLIAVVFSYITSPIVRWFERRRLSRALGVVVVFVGFLLF-----VALASVLLANMAG 95

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           +L   +        P+  W   +PG     EL               +T L+      + 
Sbjct: 96  QLAGFLTGLPNLLAPLLDWAQALPGRFGQIELPQPVRDALAQASSSIQTLLQGFTQSLLR 155

Query: 151 RFASR---------FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
              +          F    +     ++  +    +   D   I+  L       +     
Sbjct: 156 LLQALLAQGGNLIGFFSNLVGGIFQLLTALTISIYLLYDLPKIAHTLLKAIPEPYQPMAL 215

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           ++S+   +   S   G  ++A   G ++     + GVP   +LG +T I   IP    I 
Sbjct: 216 EVSQKADRAFGSFVRGQVLVATISGTIVAVGLSIVGVPQAASLGFLTFIFNFIPFVGVII 275

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               +I L +               +   +      PF++   + +  +    G++    
Sbjct: 276 SAIPAILLALPLGWLKLALTVGVLYLTNQLEGNVYGPFVMRRAVSIHPVTGIIGILIASS 335

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             G +G+     ++A   +++ +     +  +E
Sbjct: 336 LFGFIGVLFSTPMLAFFKILYVDYYQKSRFYRE 368


>gi|308061898|gb|ADO03786.1| membrane protein [Helicobacter pylori Cuz20]
          Length = 348

 Score = 89.1 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 65/363 (17%), Positives = 138/363 (38%), Gaps = 25/363 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  Q     + +      +Y  + F    L A ++    + +      +        + +
Sbjct: 1   MKAQYFFWILFLIGFYWMIYLYQDFLMDALIAGLLCVGFFQVKVFLDKRFLN--IVSSFL 58

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +  + IVPL F+ Y     + E+        +    + +WL  I      +E  + 
Sbjct: 59  CVLILASVLIVPLYFIVYKSSNIIFEI------NFEKFSALIKWLKGI-----ITENLSH 107

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +    +    E F   +   ++ + +S  G   L      +F++  LFFF+  G    
Sbjct: 108 FPTIHDGVSKFLENFNAASITGYLLKISSYVGKYSLKLITDALFILGLLFFFFYYGEKFY 167

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +   L     KKI   V  ++R   L   I  I EG+  G+     G      LG
Sbjct: 168 RYFLGVLP-LGMNQSKKIFEEVAGILRIVLLTSLITVILEGVAFGAMIVWFGHDGWS-LG 225

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLV-- 301
           ++  + +++P  G  + +  ++IY L  GN+  A  + L+  + +  ++D  ++P L+  
Sbjct: 226 ILYGLASLVPAVGGALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVF 285

Query: 302 ------GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                    +K+  +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 286 IKKRIFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345

Query: 356 ISS 358
              
Sbjct: 346 ACE 348


>gi|257869140|ref|ZP_05648793.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
 gi|257803304|gb|EEV32126.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
          Length = 374

 Score = 89.1 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 56/334 (16%), Positives = 117/334 (35%), Gaps = 6/334 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F    FAPVL A  + +   PI    +   +    +  ++  + ++   ++ ++ +    
Sbjct: 40  FFSTLFAPVLIAGFLYYLLNPIVVFLMKTTKIKRIYAVILVLLLLVAAIVLTVVSVIPNL 99

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++ +L   +    ++       ++D P             +       LS   L    
Sbjct: 100 INQISQLAENIPTFAKNMETWISKIADDPVFKQID------FAQQLENLNLSYGSLLQQF 153

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +               + I+ +   LF+  +DG  +   + S+          ++  
Sbjct: 154 LSGLSTSLGSIVGTIASATMIIVTVPFILFYMLKDGEKLVPNIQSVLPEKRRNQIIELLG 213

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K + +   G  I  I         YWL GV      GVI  I  +IP   P      
Sbjct: 214 DLNKTLSNYISGQAIECIFVATFTFIGYWLVGVNYAFLFGVIAGITNLIPYLGPYLGLIP 273

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + I  + F A    +   +   +    + P ++G  + +  L     L+      GL
Sbjct: 274 AVLVTIFDDPFRALLCGVVVLVVQQLDGNVIYPNVIGKSLAIHPLTIILVLLVAGNIAGL 333

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           LG+F+G    A+   I    I  I+++K K +  
Sbjct: 334 LGIFLGVPFYAICRTIVIFVIRLIRDDKSKKNQE 367


>gi|257885399|ref|ZP_05665052.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257821255|gb|EEV48385.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
          Length = 379

 Score = 89.1 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 54/320 (16%), Positives = 113/320 (35%), Gaps = 15/320 (4%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L   F P+L A  I +   PI       +               +  F+V ++ +    
Sbjct: 40  MLSAIFLPLLVAGFIYYMFDPIVVFLEKHRIPR--------VFGFLLTFLVVIILVVLTV 91

Query: 86  MLEMKELVSKVVLANQHGIPVPR----WLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
           M  + +L+ + +   Q           WL+++       E    +L    +   LS + L
Sbjct: 92  MNVVPQLMEQTIQLTQSLPTYADETSKWLNEL---AQREEFKNFNLEEQLASANLSLSNL 148

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
               +  +    S+     + + + +  +   L F ++DG      L            +
Sbjct: 149 FNIILVSLSASVSKIISFMMQFFILLFTVPFILLFMFKDGHKFIDALSHFFPKAIRKELR 208

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +  + + + + +      + A+  G++   A  +   P  + L VI  I  +IP   P  
Sbjct: 209 QTVKELNETLSAYISSTILDALIIGVMSFLAMRIFDQPYSLLLAVICGITNIIPYVGPFI 268

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               +I + +  + F A  + L   +   +    ++P L G  + +  L     L+G   
Sbjct: 269 GAVPAIIVGLFISPFQALYMALSILVIQQLDGNLIKPLLFGKSMNIHPLTIILVLIGAGS 328

Query: 322 TMGLLGLFIGPVLMALIAVI 341
             G+LG+ I   + A+I  I
Sbjct: 329 VAGILGMLICIPVYAVIKTI 348


>gi|330998169|ref|ZP_08321995.1| hypothetical protein HMPREF9442_03104 [Paraprevotella xylaniphila
           YIT 11841]
 gi|329568861|gb|EGG50659.1| hypothetical protein HMPREF9442_03104 [Paraprevotella xylaniphila
           YIT 11841]
          Length = 420

 Score = 89.1 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 55/343 (16%), Positives = 116/343 (33%), Gaps = 14/343 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + + +  L  L     P   A  + +  +P    F  K    +  L +  T+ ++   I 
Sbjct: 21  LGLSIYVLNLLSTVLLPFFIAWFLAYMIYPTVKFFQYKLHLHNRILCIAITLLLILAAIA 80

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
              +L       +   +++ V          +   +          + +++     +++L
Sbjct: 81  GFFWLI------IPPAIAEFVRFRDLIADFIKETGNSTITRSIEIFFQQNIDQNAFIRLL 134

Query: 137 SETFLKTNGIDFIPRFASRFGMIF--LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
            E  +       I +  S     F  +   L    +++ LFF   D   +S+    L   
Sbjct: 135 HENNVMEALKVAINQLWSLVSQTFDFIIAILGFCMVLLYLFFILLDYEKLSEGWIKLVPK 194

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
               +  ++   V   + S F G  ++A   G++    + +   P  + LG+    + ++
Sbjct: 195 RSRRFAAELVDDVQHGMNSYFRGQALVAFLVGILFSIGFLIIDFPLAIGLGMFIGFLNLV 254

Query: 255 PGGAPISFTAVSIYLLI----KGNIFNATCLF--LWGAIELFIVDKTLRPFLVGGPIKLP 308
           P    I F    +  L+     G  F    L   +   +   I D  L P ++G  + L 
Sbjct: 255 PYMQAIGFIPTLLLALLKANDTGESFWLILLSACIVFIVVQSIQDAFLVPKIMGKLMGLN 314

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
                  L      +GL+GL I   L  L+   ++  I   + 
Sbjct: 315 PAVILLSLSVWGYLLGLIGLIIALPLTTLLLSYYRRFIERDER 357


>gi|299538203|ref|ZP_07051488.1| hypothetical protein BFZC1_19390 [Lysinibacillus fusiformis ZC1]
 gi|298726405|gb|EFI66995.1| hypothetical protein BFZC1_19390 [Lysinibacillus fusiformis ZC1]
          Length = 352

 Score = 89.1 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 63/334 (18%), Positives = 121/334 (36%), Gaps = 2/334 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I R +++  +L++ YF+     P++ A I  F   PI   F  K + S         +
Sbjct: 8   KLIFRLIVIISLLLAAYFIIPVSMPLILAGISAFFLEPIVMFFKRKWKMSRKIAVAFIYI 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +  +         M ++  L  +          +   + +               S
Sbjct: 68  VSVIVISIICYLSITQIMTQIILLSKQAPYYISKLSDMWLHMQENISKYTEDFPPEVSAS 127

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             ++     +   ++    F     S F        +S++  +IALF F  D   + Q  
Sbjct: 128 LQKTTMDFIKKVEESFLSFFNYSKVSAFFSEIPSLFISLLVYMIALFLFMLDLPKLKQIT 187

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
               +       K I   +             ++   G V      L      V + +I 
Sbjct: 188 YKYLKPNTAKKIKIILNRLKDATFGYMKAHLFVSFIIGGVTLIGLLLIQPKYAVTMTIII 247

Query: 249 AIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++ ++P  G+ I      +Y L+ GN   A  LF+  AI L I+ + + P L+G  I L
Sbjct: 248 WLIDIVPFLGSIIILAPWGLYHLLMGNTSIAVKLFILAAILL-IIRRVVEPKLMGDHIGL 306

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             LPT   +  G++  G++GL +GP ++     +
Sbjct: 307 STLPTLISMFIGLQLFGIIGLLVGPFVIIFFIAL 340


>gi|218899559|ref|YP_002447970.1| hypothetical protein BCG9842_B0726 [Bacillus cereus G9842]
 gi|218541668|gb|ACK94062.1| putative membrane protein [Bacillus cereus G9842]
          Length = 355

 Score = 89.1 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 112/318 (35%), Gaps = 11/318 (3%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           ++  K    P L A  I +   P+      +            T++++ ++I+    + Y
Sbjct: 36  IFVFKVAITPFLIACFIAYLLHPLIEKIHKEGMPR--------TLAILLIYILFFGGIGY 87

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                   ++ ++   N+      +       G+      T +       K+        
Sbjct: 88  GIYKGTPVVIKQLQEINEQFPQFTKMYDSWMDGVTEQ---TANFPSFIHEKVKQLFVGVE 144

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             I  +           LD  L I  +   +F+  +D          L    +    + +
Sbjct: 145 TKIQALLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRGTGQML 204

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
           ++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI   
Sbjct: 205 AKEIDKSLGSYIRGQLFVCLVLGGVSALSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGA 264

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G    
Sbjct: 265 IPTLMIAATVSTSLLIKAGITIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEVA 324

Query: 324 GLLGLFIGPVLMALIAVI 341
           G++GL I   ++A+I  +
Sbjct: 325 GIVGLLISVPILAVIRTV 342


>gi|304391982|ref|ZP_07373924.1| ATP/GTP-binding protein [Ahrensia sp. R2A130]
 gi|303296211|gb|EFL90569.1| ATP/GTP-binding protein [Ahrensia sp. R2A130]
          Length = 369

 Score = 89.1 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 105/334 (31%), Gaps = 17/334 (5%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             + ++ L   +    P ++ + + +   P+      K   S      I     + +F +
Sbjct: 22  FVVTVLFLIVFRSILLPFIAGMALAYMLDPVADKLE-KLGASRLLATTIILFVFIIMFAL 80

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L+ L      +   L+ ++         +   +                +         
Sbjct: 81  ALILLVPVLSNQFSGLIQRMPSYVTSLQSLIASVEK--------PWLRDLVGESADNIRE 132

Query: 137 SETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           +   L   G  +           G   +D    ++   I  F+   D   ++ +++S   
Sbjct: 133 NLDGLLQQGAGWASTVLGSIWQSGKALVDVLSLLVITPIVAFYLLLDWDRMTAKVESWLP 192

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                    I+  +   I     G   + +  G        LAG+   + +G+I  +++ 
Sbjct: 193 RQHKGELTGIADDMNAAIAGFVRGQGTVCLILGTFYALGLTLAGLNFGLLIGMIAGLISF 252

Query: 254 IPG----GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           IP        I    V++       I+      ++ A+  F     L+P LVG  + L  
Sbjct: 253 IPFVGSIIGAILAIGVALVQFWPDYIWIGVIAGIF-AVGQFFEGNFLQPKLVGESVGLHP 311

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +   F L      MG  GL I   + A I V+ +
Sbjct: 312 VWLMFSLSAFGALMGFTGLLIAVPVAAAIGVLVR 345


>gi|302532542|ref|ZP_07284884.1| integral membrane protein [Streptomyces sp. C]
 gi|302441437|gb|EFL13253.1| integral membrane protein [Streptomyces sp. C]
          Length = 367

 Score = 89.1 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/350 (14%), Positives = 123/350 (35%), Gaps = 18/350 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGF----TSWPIYSSFISKKEESSTFLAVIATVS 69
            +++ ++  ++ ++ G    V+  LI+       +WP+ ++F+ ++       A + TV 
Sbjct: 20  LLVVLVMAAAVLWVLGRMWSVIWPLIVALLLTTLTWPL-AAFLRRRGWPPALAASVVTVL 78

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            +      +  +      +  ELV  V    Q    +  W +  P  +   ++     + 
Sbjct: 79  FLLAAAGIVALIAVPVASQSGELVDGVAAGIQ---QLREWAAGPPLNIGNDQITGAFDAA 135

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              L+    + + T                  +  ++ +  +  +FFF +DG      L 
Sbjct: 136 VARLQNSVGSAVSTVATGV---------STVFNGLVTAVLAVFLMFFFLKDGPRFLPWLT 186

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                        ++    + + S       + + + + +G   W+ GVP  + L V+T 
Sbjct: 187 RQLPGRLGTDVPVVAARGWQTLGSFVRSQAFVGLLDAVFIGLGLWIVGVPLVLPLAVLTF 246

Query: 250 IMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           + A +P  GA  +     +  L+   + +A  +         +     +P +    + L 
Sbjct: 247 VSAFVPIVGALFAGLVAVLIALVSNGLTDALIVLAIIVAVQQLEGNVFQPMIQSRGLGLH 306

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                  +  G    G++G  +     AL+AV+W      + E     ++
Sbjct: 307 AAVVLLAVTLGGSLAGVVGSLLAVPAAALVAVVWNYLRDQLGEPPHDPAA 356


>gi|121594252|ref|YP_986148.1| putative GAF sensor protein [Acidovorax sp. JS42]
 gi|120606332|gb|ABM42072.1| putative GAF sensor protein [Acidovorax sp. JS42]
          Length = 824

 Score = 89.1 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/358 (15%), Positives = 122/358 (34%), Gaps = 26/358 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M  T+ + + ++  +I  +++  LYF +    P+  A ++ F   P+ +    K+     
Sbjct: 41  MDATVPSLRFMIGLVIAALVVAGLYFGRTLLVPLALAFLLSFVLEPLVAQL--KRMGLPR 98

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             +VIA V  M + +            E+   +       +  +   R     PG    +
Sbjct: 99  LPSVIAVVMAMLMVLGVGALFVGNEARELSAQLPSYQNTIRKKLRSLRQQLRAPGMFDGA 158

Query: 121 EL---------------WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           +                 +     P   K+  +  + +     +   ++  G +      
Sbjct: 159 KRTFDIVQREVEAAAPALSGVARAPTVQKVQVQPPVLSPANQLMAALSAVSGPLT----- 213

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
               +++ + F   D   +  +L  L           +     ++ R   +   ++ +  
Sbjct: 214 QAGLVLVFVIFILLDRVDLRDRLLRLWGGNLHRATDAMDEAGDRITRYLTMQ-LLVNVTY 272

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           G+ + +  WL GVP  V  G + A+M  +P   P    A  + L    +      L+  G
Sbjct: 273 GIPMAAGLWLIGVPGAVLWGSLAAVMRFVPYLGPFIAAAFPLTLAFAVDPGWDLVLWTLG 332

Query: 286 AIELF--IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAV 340
            I L   + +  + P+L G    L  L             G +GL +  P+ + L+ +
Sbjct: 333 LIVLLELVSNNVIEPWLYGSSTGLSALSLIVAATFWAALWGPVGLIMSTPLTVCLLVI 390


>gi|322392082|ref|ZP_08065544.1| membrane protein [Streptococcus peroris ATCC 700780]
 gi|321144982|gb|EFX40381.1| membrane protein [Streptococcus peroris ATCC 700780]
          Length = 387

 Score = 89.1 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/336 (14%), Positives = 116/336 (34%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+ +  + FL     PV+ + ++ +   P+   F+ K + +      I  V +  L I
Sbjct: 42  ISFLFIPVIDFLSVVMLPVILSGLLFYLLNPLVD-FMEKHKINRVLAISIIFVIIAILLI 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V L         ++      V    +    V   L              + L+   +   
Sbjct: 101 VGLAVAIPNLQRQVVIFAQNVPSYLEDADKVIDDLVTKRLPDDFRPQLEQVLAQFSTQAT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              + + +  ++++    S          +++I M   LF+  RDG  +   +     + 
Sbjct: 161 AWASNISSKAVNWVSALIS----GTSQVIVALIIMPFMLFYLLRDGKGLRNYITQFLPNK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 K+   V + + +   G   +A+   ++    + + G+   V LG+    + ++P
Sbjct: 217 LREPVGKVLSEVNQQLANYVRGQITVAVIVAIMFIIFFKIIGLRYGVVLGITAGFLNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMIPALVLGLIAGPIMLLKVIVVFIVEQTIEGRFVSPLILGSQLNIHPITILFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      G+ G+ +G  + A   V+         E
Sbjct: 337 LLTSGSMFGIWGVLLGIPIYASAKVVISAIFDWYTE 372


>gi|227512952|ref|ZP_03943001.1| permease [Lactobacillus buchneri ATCC 11577]
 gi|227523079|ref|ZP_03953128.1| permease [Lactobacillus hilgardii ATCC 8290]
 gi|227083811|gb|EEI19123.1| permease [Lactobacillus buchneri ATCC 11577]
 gi|227089760|gb|EEI25072.1| permease [Lactobacillus hilgardii ATCC 8290]
          Length = 359

 Score = 89.1 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 62/330 (18%), Positives = 114/330 (34%), Gaps = 5/330 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI      F    F PVL A I+ +   PI +                A   V  L +
Sbjct: 20  ISFIFSPIAIFFSTIFIPVLLAGILYYMLNPIVNLLTKIPIGRKKVSRTWAVTLVFLLLL 79

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             ++ +    + ++   +  +  +  + I   + L +       S+   K +   Q L  
Sbjct: 80  GIIILMATVFIPKVLNQLMNLANSVPNAINDGQSLLEKALKEMNSQQLLKKIDFTQ-LTQ 138

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI---IALFFFYRDGFSISQQLDSLG 192
              T +      F     S  G +      ++I  +   + LF+  +DG+ ++  + S  
Sbjct: 139 KFSTNITDYANSFFNGLTSGIGGVISAAANAVIIAVTVPVVLFYMLKDGYRLAPNIKSFL 198

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                     +   + + I     G  I  +  G      Y + G+P+ + LGVI  I  
Sbjct: 199 PEKHREQTMDLISAMNRTISKYISGQMIECLFVGTFTAIGYLIIGLPNALLLGVIAGICN 258

Query: 253 MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           +IP  G  I      I     G         +   I   I    + P ++G  +++  L 
Sbjct: 259 IIPYLGPYIGIAPALIVSFSHGGWLGMVYNIVIVIIVQQIDGNLVYPNVIGKSLQIHPLT 318

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
               L+      GL+G+ +   L A++ VI
Sbjct: 319 IIIILLAAGNIAGLMGMILAVPLYAIVKVI 348


>gi|18310895|ref|NP_562829.1| hypothetical protein CPE1913 [Clostridium perfringens str. 13]
 gi|110800685|ref|YP_696593.1| hypothetical protein CPF_2169 [Clostridium perfringens ATCC 13124]
 gi|168204903|ref|ZP_02630908.1| putative membrane protein [Clostridium perfringens E str. JGS1987]
 gi|168208614|ref|ZP_02634239.1| putative membrane protein [Clostridium perfringens B str. ATCC
           3626]
 gi|168214166|ref|ZP_02639791.1| putative membrane protein [Clostridium perfringens CPE str. F4969]
 gi|168215539|ref|ZP_02641164.1| putative membrane protein [Clostridium perfringens NCTC 8239]
 gi|18145577|dbj|BAB81619.1| hypothetical protein [Clostridium perfringens str. 13]
 gi|110675332|gb|ABG84319.1| putative membrane protein [Clostridium perfringens ATCC 13124]
 gi|170663583|gb|EDT16266.1| putative membrane protein [Clostridium perfringens E str. JGS1987]
 gi|170712978|gb|EDT25160.1| putative membrane protein [Clostridium perfringens B str. ATCC
           3626]
 gi|170714339|gb|EDT26521.1| putative membrane protein [Clostridium perfringens CPE str. F4969]
 gi|182382197|gb|EDT79676.1| putative membrane protein [Clostridium perfringens NCTC 8239]
          Length = 368

 Score = 89.1 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 57/341 (16%), Positives = 121/341 (35%), Gaps = 16/341 (4%)

Query: 27  LKGFFA---PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           ++ F +   P   A  I +   P+      K +    F  +I+ + V+    + +  +  
Sbjct: 36  IRPFLSVLTPFFWAFGIAYLINPLMMLIEKKFKLKRAFSLMISYILVIICVYILIAIIVP 95

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                + EL S +   +++      W+++    M    L   HL+   +  I   + L +
Sbjct: 96  TIFDSLSELFSNL---SEYASSAESWINNTLASMNV-PLDLNHLNTSATEFISKTSTLLS 151

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK- 202
           N +  +     +     + +    I  I    +   D  ++ +    +   + P+     
Sbjct: 152 NIVGSLLTQTIKITSSVVKFVFGFIISI----YMLMDKETLIEGCKKIIIAVMPSEKSSE 207

Query: 203 ----ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
                      +     +G  I ++  G++      L G    V +  I  +  MIP   
Sbjct: 208 LFISFMAEAHNIFSRFIIGKIIDSLIIGVLCYIGLLLMGTQYAVLISFIVGLTNMIPYFG 267

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P      +  L +      A  + L+  I        L P ++G  + +  L   F +  
Sbjct: 268 PFIGMIPAFLLTLIVQPSMAIWVLLFIFILQQFDGWYLGPKILGDQVGVSPLFIIFAVTV 327

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G    G+LG+F+   ++ALI +  ++ I    ENK++  S 
Sbjct: 328 GGGIFGVLGMFLSVPIIALIKIYTEKFIEYRLENKKQNFSE 368


>gi|30022466|ref|NP_834097.1| hypothetical protein BC4385 [Bacillus cereus ATCC 14579]
 gi|206969567|ref|ZP_03230521.1| putative membrane protein [Bacillus cereus AH1134]
 gi|218236103|ref|YP_002369200.1| hypothetical protein BCB4264_A4510 [Bacillus cereus B4264]
 gi|296504881|ref|YP_003666581.1| hypothetical protein BMB171_C4052 [Bacillus thuringiensis BMB171]
 gi|29898024|gb|AAP11298.1| hypothetical Membrane Spanning Protein [Bacillus cereus ATCC 14579]
 gi|206735255|gb|EDZ52423.1| putative membrane protein [Bacillus cereus AH1134]
 gi|218164060|gb|ACK64052.1| putative membrane protein [Bacillus cereus B4264]
 gi|296325933|gb|ADH08861.1| hypothetical protein BMB171_C4052 [Bacillus thuringiensis BMB171]
          Length = 355

 Score = 89.1 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 112/318 (35%), Gaps = 11/318 (3%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           ++  K    P L A  I +   P+      +            T++++ ++I+    + Y
Sbjct: 36  IFVFKVAITPFLIACFIAYLLHPLIEKIHKEGMPR--------TLAILLIYILFFGGIGY 87

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                   ++ ++   N+      +       G+      T +       K+        
Sbjct: 88  GIYKGTPVVIKQLQEINEQFPQFTKMYDSWMDGVTEQ---TANFPSFIHEKVKQLFVGVE 144

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             I  +           LD  L I  +   +F+  +D          L    +    + +
Sbjct: 145 TKIQALLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRGTGQML 204

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
           ++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI   
Sbjct: 205 AKEIDKSLGSYIRGQLFVCLVLGGVSALSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGA 264

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G    
Sbjct: 265 IPTLMIAATVSTSLLIKAGITIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEVA 324

Query: 324 GLLGLFIGPVLMALIAVI 341
           G++GL I   ++A+I  +
Sbjct: 325 GIVGLLISVPILAVIRTV 342


>gi|307701351|ref|ZP_07638372.1| putative membrane protein [Mobiluncus mulieris FB024-16]
 gi|307613512|gb|EFN92760.1| putative membrane protein [Mobiluncus mulieris FB024-16]
          Length = 504

 Score = 89.1 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 55/329 (16%), Positives = 115/329 (34%), Gaps = 17/329 (5%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           F ++  L+ +   F P   AL +  T  P+    IS+K       A+ A ++++ +F V 
Sbjct: 111 FAVVAGLWIIAPVFTPAFLALCMALTLHPVSQWLISRKVP----AALAALLNIVLMFAV- 165

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
                   ML +  +++  + A    +P  +    I        L  K            
Sbjct: 166 --------MLGVTGMIAGALTAVTTELPRYQRKFQILYQDSI-HLLEKLGDRFNIDMSSV 216

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            +  +   +  +  +A            ++ +  +   F   D   + ++   L  +   
Sbjct: 217 TSPAQRVDLGRVTSYAGSLANSLGSAGTTMFYFTMLAIFLVGDLVVMRRRAAELATYAPG 276

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-G 256
                  R   +  R  FL  T    G  ++     ++  VPS +  G++  +   IP  
Sbjct: 277 LAIS--LRKFARGARMYFLMATFFGAGVAVLDIIVMYIFEVPSPLTWGILAFVANYIPAV 334

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           G  IS     + +L+   +  A  + +   +   +V   ++P   G  + L    +F  L
Sbjct: 335 GFIISMIPPVLMVLVTQGVGPAIGVAVSFIVISTVVFNFVQPRFAGSAVGLNPTISFLSL 394

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +     +G LG  +   +   I  I+ +S
Sbjct: 395 MVWSAVLGPLGAVVSVPMTLFIKAIFVDS 423


>gi|52549442|gb|AAU83291.1| Htr-like protein [uncultured archaeon GZfos27E6]
          Length = 367

 Score = 89.1 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 63/367 (17%), Positives = 132/367 (35%), Gaps = 43/367 (11%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +   + + +  I +  Y L  F   ++  + I + + P+YS F  + +   +  A I+
Sbjct: 8   RNKLYWQILGLISIALLAYMLFPFLDVLIYGIFIYYVARPMYSKFDRRVK-HKSVGAFIS 66

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
              V+   ++  +F      +E+   +S+V                     + +EL+   
Sbjct: 67  LFFVVLPIVLISIFTLSIAYIELSTFLSQVDFG---------------HMGYVNELFKNF 111

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFA-----SRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                ++K    + L + G  ++         S     F+D    +       F+   D 
Sbjct: 112 EGIAANIKQGDISTLISQGDTWVLILTQITKFSDIFFKFIDVLFRLFLTFAIAFYLLTDA 171

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG---- 237
             + + +        P   KK    V   I + + G  + A+   L+    +WL      
Sbjct: 172 TKLREWITDTFLGGKPELTKKFFDEVDSDIHTVYFGNILTAVLTALIAAVIFWLLNLVAP 231

Query: 238 ----VPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--- 289
               +P  + + ++  +   IP  G  + +  ++IYL+I+    N      W  I L   
Sbjct: 232 PQLLIPYPILMAILCGLGIFIPLVGMKLVWVPLAIYLVIQ-AYLNGILFTDWWFILLFLV 290

Query: 290 -------FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                  F  D  LRP++ G    +      F  + G+   G +GLF+GP+++ +     
Sbjct: 291 VVFVVVDFAPDIALRPYISGK--HVHAGTMLFAYIFGIAVFGFVGLFLGPMILIIATNFM 348

Query: 343 KESIMAI 349
           K  +  +
Sbjct: 349 KIVLPEL 355


>gi|187734634|ref|YP_001876746.1| protein of unknown function UPF0118 [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187424686|gb|ACD03965.1| protein of unknown function UPF0118 [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 436

 Score = 89.1 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 131/364 (35%), Gaps = 30/364 (8%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +   ++F ++  L FL+    P+L A ++ +   PI S  +  K      +  +   ++ 
Sbjct: 41  IAAFVIFEVVELLGFLEPVLLPILIAAVVAYLLEPIVSWLVRLKFSRPWAVVTVMFAALA 100

Query: 72  CLFIV------PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            L         PL+      +    EL  K        I +P ++S     ++++ L   
Sbjct: 101 VLVGFGATILPPLIRQTDELIDNRMELWDKTSELIDSTIEIP-FISRTIDSVYSTSLREL 159

Query: 126 HLSHPQSLKILSETFLKTNGIDFIP-----------------RFASRFGMIFLDYCLSII 168
           + SH    ++      +T                            R     +   +SI+
Sbjct: 160 NASHYTEAEVHDLRNARTAREKLGAYMTINSSFYQDKLMSWLTSGGRALYSTIGIMVSIL 219

Query: 169 FMIIALFFFYRDGFSISQQ---LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
              I  F+F  +   I ++   +  L    F          +   + S F G  +++I E
Sbjct: 220 ITPIFAFYFLLEADKIKEKWPSILPLKVSKFRKDVVDTMEEINGYLISFFRGQMLVSIIE 279

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLW 284
           G+++     L G+P  + +G    ++ ++P  G   +F    +        F    +   
Sbjct: 280 GILIAICLKLIGLPYAITIGAAVCVLGIVPYLGIITAFIPAVLLAWFTWGDFQHVLIVSG 339

Query: 285 GAIELFIVDK-TLRPFLVGGPIKLPFLPTFFGLVG-GVRTMGLLGLFIGPVLMALIAVIW 342
             + +   D   ++P +VG  ++L  L   F ++   +   GL+G  +   L A I V++
Sbjct: 340 IFLAVNQFDGWIIQPKIVGDSVELHPLTVMFSVLIWTLILGGLIGALLAVPLTAAIKVLY 399

Query: 343 KESI 346
           K  I
Sbjct: 400 KRYI 403


>gi|163941007|ref|YP_001645891.1| hypothetical protein BcerKBAB4_3083 [Bacillus weihenstephanensis
           KBAB4]
 gi|229060952|ref|ZP_04198306.1| hypothetical protein bcere0026_30460 [Bacillus cereus AH603]
 gi|229134204|ref|ZP_04263020.1| hypothetical protein bcere0014_31170 [Bacillus cereus BDRD-ST196]
 gi|163863204|gb|ABY44263.1| protein of unknown function UPF0118 [Bacillus weihenstephanensis
           KBAB4]
 gi|228649224|gb|EEL05243.1| hypothetical protein bcere0014_31170 [Bacillus cereus BDRD-ST196]
 gi|228718321|gb|EEL69955.1| hypothetical protein bcere0026_30460 [Bacillus cereus AH603]
          Length = 373

 Score = 89.1 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 120/326 (36%), Gaps = 5/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + FLK  F PVL A ++ +   P + S + +K  S         + V+ LF+
Sbjct: 41  ISFVFTPFVVFLKTIFFPVLLAGVLFYILHP-FVSLLERKGVSRIVSIASIYIIVLGLFV 99

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
              + +      ++  L+  +              +   G         + L+   +  +
Sbjct: 100 FLAVTVIPIIKDQVNALIDNLPYFGHE----IERAARKFGESNVIGRMQESLNIDFANIV 155

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   T  +  +    + F     +  L+ + +   LF+  +DG  +           
Sbjct: 156 KDSTMNFTKSLSSVTGNVTGFLSTITEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQ 215

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                K+I   +   I S   G  I+++  G++L   Y + G+   V L ++  I+ ++P
Sbjct: 216 RQPAAKRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVP 275

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI     ++ +    +      + +   I      K + P ++G  + +  +   F 
Sbjct: 276 YVGPIIAITPALIIAFIDSPSMVLKVIIVMMIVQLAEGKFISPQVMGKKLDIHPITIIFI 335

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++      G++G+ +     A++ V+
Sbjct: 336 ILTAGNLFGIMGIILAIPGYAILKVL 361


>gi|269977634|ref|ZP_06184601.1| putative domain of unknown function [Mobiluncus mulieris 28-1]
 gi|269934237|gb|EEZ90804.1| putative domain of unknown function [Mobiluncus mulieris 28-1]
          Length = 504

 Score = 89.1 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 54/329 (16%), Positives = 117/329 (35%), Gaps = 17/329 (5%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           F ++  L+ +   F P   AL +  T  P+    IS+K       A+ A ++++ +F V 
Sbjct: 111 FAVVAGLWIIAPVFTPAFLALCMALTLHPVSQWLISRKVP----AALAALLNIVLMFAV- 165

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
                   ML +  +++  + A    +P  +    I        L          +  ++
Sbjct: 166 --------MLGVTGMIAGALTAVTTELPRYQRKFQILYQDSIHLLERLGDRFNIDMSSVT 217

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
               + + +  +  +A            ++ +  +   F   D   + ++   L  +   
Sbjct: 218 SPAQRVD-LGRVTSYAGSLANSLGSAGTTMFYFTMLAIFLVGDLVVMRRRAAELATYAPG 276

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-G 256
                  R   +  R  FL  T    G  ++     ++  VPS +  G++  +   IP  
Sbjct: 277 LAIS--LRKFARGARMYFLMATFFGAGVAVLDIIVMYIFEVPSPLTWGILAFVANYIPAV 334

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           G  IS     + +L+   +  A  + +   +   +V   ++P   G  + L    +F  L
Sbjct: 335 GFIISMIPPVLMVLVTQGVGPAIGVAVSFIVISTVVFNFVQPRFAGSAVGLNPTISFLSL 394

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +     +G LG  +   +   I  I+ +S
Sbjct: 395 MVWSAVLGPLGAVVSVPMTLFIKAIFVDS 423


>gi|228475955|ref|ZP_04060663.1| putative membrane protein [Staphylococcus hominis SK119]
 gi|228269778|gb|EEK11258.1| putative membrane protein [Staphylococcus hominis SK119]
          Length = 409

 Score = 89.1 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 110/293 (37%), Gaps = 5/293 (1%)

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +++  +F+V +        L +  +  ++     +        +     +    + +  
Sbjct: 95  LLAIAIVFLVIIGGATLIIDLLIPVIGDQIKQLANNFPKYIEKFNRAIDKVTHMSILSSF 154

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI----IALFFFYRDGF 182
            +  Q     +   + +   D+   F ++    F +  +++  +I      LFF  +DG 
Sbjct: 155 YNQIQDWLDSTSKKIPSLTSDYFSGFGTKI-RTFAEAVVNVGVVIATTPFVLFFMLKDGT 213

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                   +    F   +  +   +   + S   G  I++   G++L   Y + G+   +
Sbjct: 214 KFRDYTTKIVPPKFRKDYHDLLEKMSVQVGSYIQGQIIVSFCIGILLFIGYSIIGLDYGL 273

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L  I A+ +++P   P    + +I + I  + F    L +   +  FI    + P ++G
Sbjct: 274 VLASIAAVTSVVPYLGPTIAISPAIIIAIITSPFMLLKLIIVWTLVQFIEGHFISPNIMG 333

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             +K+  L   F L+     +G++G+ +G    A++ V+     +  K    K
Sbjct: 334 KTLKIHPLTIIFILLSAGNLLGIVGVILGIPGYAILKVLVSHIFLLFKRRYNK 386


>gi|229012562|ref|ZP_04169736.1| hypothetical protein bmyco0001_30050 [Bacillus mycoides DSM 2048]
 gi|229168102|ref|ZP_04295830.1| hypothetical protein bcere0007_30610 [Bacillus cereus AH621]
 gi|228615346|gb|EEK72443.1| hypothetical protein bcere0007_30610 [Bacillus cereus AH621]
 gi|228748722|gb|EEL98573.1| hypothetical protein bmyco0001_30050 [Bacillus mycoides DSM 2048]
          Length = 376

 Score = 89.1 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 120/326 (36%), Gaps = 5/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + FLK  F PVL A ++ +   P + S + +K  S         + V+ LF+
Sbjct: 44  ISFVFTPFVVFLKTIFFPVLLAGVLFYILHP-FVSLLERKGVSRIVSIASIYIIVLGLFV 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
              + +      ++  L+  +              +   G         + L+   +  +
Sbjct: 103 FLAVTVIPIIKDQVNALIDNLPYFGHE----IERAARKFGESNVIGRMQESLNVDFANIV 158

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   T  +  +    + F     +  L+ + +   LF+  +DG  +           
Sbjct: 159 KDSTMNFTKSLSSVTGNVTGFLSTITEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQ 218

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                K+I   +   I S   G  I+++  G++L   Y + G+   V L ++  I+ ++P
Sbjct: 219 RQPAAKRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVP 278

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI     ++ +    +      + +   I      K + P ++G  + +  +   F 
Sbjct: 279 YVGPIIAITPALIIAFIDSPSMVLKVIIVMMIVQLAEGKFISPQVMGKKLDIHPITIIFI 338

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++      G++G+ +     A++ V+
Sbjct: 339 ILTAGNLFGIMGIILAIPGYAILKVL 364


>gi|119505643|ref|ZP_01627714.1| permease, putative [marine gamma proteobacterium HTCC2080]
 gi|119458586|gb|EAW39690.1| permease, putative [marine gamma proteobacterium HTCC2080]
          Length = 356

 Score = 89.1 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/344 (14%), Positives = 121/344 (35%), Gaps = 14/344 (4%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I+  I V ++ L    AP +    I +   PI  +  ++    ++ +A++  V V     
Sbjct: 16  IIVAITVFIWALHPILAPFIVGAFIAYLGDPIVDALEARGYGRTSGVALVFLVLV----- 70

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
              L      ++ +  L+ ++  A +    + RW+S          +    ++ P     
Sbjct: 71  ---LVTTLILLVGIPLLIDQLDQAIKKLPSLYRWVSTSLLPSIHERISVSPVALPPIDWE 127

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI---IALFFFYRDGFSISQQLDSLG 192
                   +    +    +           ++  M    +  F+  RD   +   +  L 
Sbjct: 128 AELAARWQSVGKLVATSVASLTRSGFGVIAAVFNMTLIPVVAFYLMRDWDRMMAAILDLV 187

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
              +     ++      V+ +   G  ++ + +  +  +  W  G+   + LG +  + +
Sbjct: 188 PITWQQDLSRMVAEANDVLGAFIRGQFLVMLAQAFLYSAGLWFVGLDFALILGTVAGLAS 247

Query: 253 MIPGGAPISFTA---VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +IP    +       V  +    G++     + L  A+   +    L P L+G  I L  
Sbjct: 248 IIPYAGAVLGVGSSLVVAWFQTGGDLSFIAWVGLVFAVGQTLESMFLTPVLIGDRIGLHP 307

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +   F L+ G +  G  G+ +   + A+I V  + ++   +  +
Sbjct: 308 VVVIFALLAGGQLAGFTGVLLALPVAAVILVFCRHAVGYYRSTE 351


>gi|308177055|ref|YP_003916461.1| hypothetical protein AARI_12820 [Arthrobacter arilaitensis Re117]
 gi|307744518|emb|CBT75490.1| conserved hypothetical membrane protein [Arthrobacter arilaitensis
           Re117]
          Length = 456

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/320 (12%), Positives = 108/320 (33%), Gaps = 11/320 (3%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           +  AL I     PI   F+ ++  S         VS++ +F   +  +    + ++   +
Sbjct: 148 IAIALFIALGLDPI-VRFLMRRGLSRPLAVAATMVSLLAIFGGFMALIIPTLVNQITAFI 206

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
           ++           P  + D     W  E+  ++    + +  +   F  +  +  +    
Sbjct: 207 TRA----------PEIVDDFLKSEWVVEIDRQYAVSERIMTEVDRFFGDSGAVTNVFGGV 256

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
                        ++ +++   +F      +      L          +++  + + + +
Sbjct: 257 LGVSQTVAQSMFGVLIVLVLAIYFLASLPGMMSFSLRLTPRSKRERVAELTVRITRSVGN 316

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
             +G   +AI   L+      + GVP    L ++ A++A IP    +    +   + +  
Sbjct: 317 YVMGQATVAILNCLLALILMSILGVPFTALLTLLVALLAFIPLVGGVIAGVLVTLVTLSL 376

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
               A    +     L I    + P ++   + LP       ++ G    G+ G  +   
Sbjct: 377 GWQTALIYAICYFGYLQIEAYFVSPRIMRRAVALPGAVAVISVIAGGSLAGVTGALMAIP 436

Query: 334 LMALIAVIWKESIMAIKENK 353
           + A   ++  E  +A ++ +
Sbjct: 437 VAASAMILLHEVFVARQDRR 456


>gi|169343821|ref|ZP_02864820.1| putative membrane protein [Clostridium perfringens C str. JGS1495]
 gi|169298382|gb|EDS80472.1| putative membrane protein [Clostridium perfringens C str. JGS1495]
          Length = 368

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 57/341 (16%), Positives = 121/341 (35%), Gaps = 16/341 (4%)

Query: 27  LKGFFA---PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           ++ F +   P   A  I +   P+      K +    F  +I+ + V+    + +  +  
Sbjct: 36  IRPFLSVLTPFFWAFGIAYLINPLMMLIEKKFKLKRAFSLMISYILVIICVYILIAIIVP 95

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                + EL S +   +++      W+++    M    L   HL+   +  I   + L +
Sbjct: 96  TIFDSLSELFSNL---SEYASSAESWINNTLASMNV-PLDLNHLNTSATEFISKTSTLLS 151

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK- 202
           N +  +     +     + +    I  I    +   D  ++ +    +   + P+     
Sbjct: 152 NIVGSLLTQTIKITSSVVKFVFGFIISI----YMLMDKETLIEGCKKIIIAVMPSEKSSE 207

Query: 203 ----ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
                      +     +G  I ++  G++      L G    V +  I  +  MIP   
Sbjct: 208 LFISFMAEAHNIFSRFIIGKIIDSLIIGVLCYIGLLLMGTQYAVLISFIVGLTNMIPYFG 267

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P      +  L +      A  + L+  I        L P ++G  + +  L   F +  
Sbjct: 268 PFIGMIPAFLLTLIVQPSMAIWVLLFIFILQQFDGWYLGPKILGDQVGVSPLFIIFAVTV 327

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G    G+LG+F+   ++ALI +  ++ I    ENK++  S 
Sbjct: 328 GGGIFGVLGMFLSVPIIALIKIYTEKFIEYRLENKKQNFSE 368


>gi|229916491|ref|YP_002885137.1| sporulation integral membrane protein YtvI [Exiguobacterium sp.
           AT1b]
 gi|229467920|gb|ACQ69692.1| sporulation integral membrane protein YtvI [Exiguobacterium sp.
           AT1b]
          Length = 377

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/341 (13%), Positives = 116/341 (34%), Gaps = 12/341 (3%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
            F+I   L  L  +  P + AL++   + P+ + F  K         +I+ + V+ + + 
Sbjct: 19  FFLITWLLNILFEYTYPFVFALLLSLMTVPLVNFFERKTNMPRALGTLISLIIVLSIVVG 78

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +  +    +        ++    +      + L +       ++ +  +          
Sbjct: 79  IITIVIIQLIHYATVAAERLPEQIETLTEFIQRLFNEKIAPLVNDAYESYQQLNPGQTTS 138

Query: 137 SETFLKTNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            E  +   G+            +               L ++ +++A FF  +D      
Sbjct: 139 LEGGITELGVQLAAAIGVLSRGVASVLQNMLAALPLVLLLVVVIVLAWFFITKDWPVYVN 198

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L+ L +      ++++   +   +         +      ++     +  V + ++  +
Sbjct: 199 SLNRLNKRKGFKEFEEVMINLKSALFGYVRAQFTLISITFGIVLIGMLILRVDNPLSFAL 258

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +     ++P  G        + Y  + G+ F A  L +   I + +      P +VG  I
Sbjct: 259 LAGFFDLLPYLGVGTLLIPWAAYAAVTGDWFVAIGLVVLYIIVI-VQRNLAEPKIVGSHI 317

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            L  L     +  G++  G+LG  +GPVL  L+  ++   +
Sbjct: 318 GLNPLIALISIFVGLKLFGVLGFIVGPVLAVLLKAVYNAKV 358


>gi|300913741|ref|ZP_07131058.1| sporulation integral membrane protein YtvI [Thermoanaerobacter sp.
           X561]
 gi|300890426|gb|EFK85571.1| sporulation integral membrane protein YtvI [Thermoanaerobacter sp.
           X561]
          Length = 362

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 55/350 (15%), Positives = 123/350 (35%), Gaps = 7/350 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R   +  + ++   +  I  + ++ +  F  P + AL++     P  +    K +    
Sbjct: 13  LRYGDIIKKTLLIVAVFIIFYLIIFKIIPFLMPFVVALLLAVIIDPGVNFLEKKLKVPRG 72

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVS-KVVLANQHGIPVPRWLSDIPGGMWA 119
             + I  + ++ +    +       + E+  L       AN     +   +  I      
Sbjct: 73  LASFILLLILIGVIGSLIAISITQLIYELSSLAEISTNYANTINDAILNLVDRI---RTY 129

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                 +++      + S     +     +  +   F     ++    +  ++A FF  +
Sbjct: 130 YISLPPNITSLIESNMHSILNYISLFAKNLATWLLNFATKLPNFFFMTLITLVATFFISK 189

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D   I   +       +  + K I   + K        +  I +   L +     + G  
Sbjct: 190 DKNLILDFIKRQIPSHWAQHAKNIQIDLLKTFFGYLRAVAAIMLITFLEVSIGLVIIGFD 249

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLR 297
               LG+   I+  +P  G+       ++Y ++I  N      L +   + + +V + + 
Sbjct: 250 YPFLLGLFVTIVDALPVLGSGSVMIPWALYNIIIIKNYMVGIYLLILYILVV-VVRQMIE 308

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           P +VG  I L  L T   +  GV+  G LGL IGPV + +   + +  I+
Sbjct: 309 PKIVGQSIGLHPLVTLLSMFIGVKLFGALGLIIGPVFVVVFKALQRAEII 358


>gi|84494511|ref|ZP_00993630.1| membrane protein [Janibacter sp. HTCC2649]
 gi|84384004|gb|EAP99884.1| membrane protein [Janibacter sp. HTCC2649]
          Length = 433

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 99/306 (32%), Gaps = 11/306 (3%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G +  +I   +  SL  L      ++ AL +     P+      +     +    I  + 
Sbjct: 101 GALGALIAIGLWHSLGRLATTITILVVALFLTLALNPMVEWLERR-GLKRSLSVGIVFIG 159

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ +F    L +F   + +  EL+ +           P +L  I    WA EL   +   
Sbjct: 160 VLVVFTFLGLLVFPPVVTQGGELIQQA----------PSYLDRILNAKWAQELDKNYDIV 209

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            +  +  ++       I  I       G   L+       ++I   +F      + +   
Sbjct: 210 EKVREEFNKRITDETFISSILGGVLGAGRAVLNGVFQTFTILILTLYFLASLPKMKKTAY 269

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           S+        + ++S  + +   S  +G   IA    ++      L G+P    L V+  
Sbjct: 270 SMVPASRRNRFAQLSEEIMRRTGSYAIGQVAIASINAILSYVMMLLLGIPYAAVLAVLVG 329

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            + +IP         +   +        A    ++  I   + +  + P ++   + +P 
Sbjct: 330 FLGLIPMVGATLGAGLVCLVAFFDEPRIALFAAIYYLIYQQVENYVIAPKIMQRTVSVPG 389

Query: 310 LPTFFG 315
             T   
Sbjct: 390 ALTVVA 395


>gi|227494765|ref|ZP_03925081.1| integral membrane protein [Actinomyces coleocanis DSM 15436]
 gi|226831765|gb|EEH64148.1| integral membrane protein [Actinomyces coleocanis DSM 15436]
          Length = 411

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 55/323 (17%), Positives = 115/323 (35%), Gaps = 9/323 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +F+I   + ++  F  P+L AL+      P       K +      A ++ +  + + + 
Sbjct: 2   IFLIGYLVSYVYIFVVPILLALLFAVLLDPFNRMLKRKLKFPPALAAGVSLIFGLGIVVG 61

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +         + K+L  +   A Q    +  W+   P G+ +S + T       ++  L
Sbjct: 62  LISAASTQIAFQFKDLAGR---AQQGADKLIAWIRTEPFGIDSSYIDTHLEDLVDAITGL 118

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +    T     + + ++  G I     LS+  +   L    ++G +I      +     
Sbjct: 119 VKGNSSTLATGVL-QVSTSIGTILTGAILSLFVLFFFL----KEGRTIWLWFVRILPEGA 173

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
                + +      +         +A  + L +G   +  GVP  + LGV+  + + IP 
Sbjct: 174 REPLHESAIRGWLTLGGYVRAQITVAAIDALGIGLGAYFLGVPLAIPLGVLVFVGSFIPI 233

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            GA I+ +   +  L+      A  + +       I    L+P+L+   + L  L     
Sbjct: 234 IGAMITGSIAVLVALVDQGPQTAVIMIVVILAVQQIEGNLLQPWLMSSAVSLHPLAVLLS 293

Query: 316 LVGGVRTMGLLGLFIGPVLMALI 338
           +  G    G+ G      + A I
Sbjct: 294 VACGSFLFGISGALFAVPIAAFI 316


>gi|163840200|ref|YP_001624605.1| hypothetical protein RSal33209_1455 [Renibacterium salmoninarum
           ATCC 33209]
 gi|162953676|gb|ABY23191.1| membrane protein, putative [Renibacterium salmoninarum ATCC 33209]
          Length = 418

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/338 (14%), Positives = 118/338 (34%), Gaps = 15/338 (4%)

Query: 20  ILVSLYFLK----GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I + LYF+          +L+AL I     P+      +K      + V+A V + C   
Sbjct: 92  IAIGLYFVAVNITQLLVWMLTALFIALGLDPVVRWLEKRKIPRPAGI-VLALVVLFCAIA 150

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
                L    + +  +LV +           P  + D     +   + ++     +  + 
Sbjct: 151 GFFSTLIPTIVEQTTQLVQQA----------PTLIKDFLNWDFFVSIDSQFHVRDRISEE 200

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +++ F  +  +  +       G    +     + +++   +F     S+ +    L    
Sbjct: 201 VTKFFADSQAVGGVFGGVVGVGSTIANGLFGTLIVLVLSLYFLASLPSMKRWAYRLAPRS 260

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                + +S  + + + +  +G   +AI   +       + GVP  + L  + A++A +P
Sbjct: 261 RRLRVEALSEQITRSVGNYVIGQACVAILNAVFAFVVMSIVGVPYSILLAFVVALLAFVP 320

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
               +    +   + +  +        +     L      + P ++   + +P       
Sbjct: 321 LVGGLIAGVLVSLVALTNSWQTMVIYAVLYFAYLQFEAYFVSPRIMQRAVAVPGAVAVIS 380

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           ++ G   +G+LG  I     A I ++ KE  +A ++ +
Sbjct: 381 VIAGGSLLGVLGALIAIPTAAAIMLLIKEIFLARQDRQ 418


>gi|308063643|gb|ADO05530.1| membrane protein [Helicobacter pylori Sat464]
          Length = 348

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 65/363 (17%), Positives = 138/363 (38%), Gaps = 25/363 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  Q     + +      +Y  + F    L A ++    + +      +        + +
Sbjct: 1   MKAQYFFWILFLIGFYWMIYLYQDFLMDALIAGLLCVGFFQVKVFLDKRFFN--IVSSFL 58

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +  + IVPL F+ Y     + E+        +    + +WL  I      +E  + 
Sbjct: 59  CVLILASVLIVPLYFIVYKSSNIIFEI------NFEKFSALIKWLKGI-----ITENLSH 107

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +    +    E F   +   ++ + +S  G   L      +F++  LFFF+  G    
Sbjct: 108 FPTIHDGVSKFLENFNAASITGYLLKISSYVGKYSLKLITDALFILGLLFFFFYYGEKFY 167

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +   L     KKI   V  ++R   L   I  I EG+  G+     G      LG
Sbjct: 168 RYFLGVLP-LGINQSKKIFEEVAGILRIVLLTSLITVILEGVAFGAMIVWFGHDGWP-LG 225

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLV-- 301
           ++  + +++P  G  + +  ++IY L  GN+  A  + L+  + +  ++D  ++P L+  
Sbjct: 226 ILYGLASLVPAVGGALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVF 285

Query: 302 ------GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                    +K+  +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 286 IKKRIFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345

Query: 356 ISS 358
              
Sbjct: 346 ACE 348


>gi|49475709|ref|YP_033750.1| permease protein [Bartonella henselae str. Houston-1]
 gi|49238516|emb|CAF27748.1| permease protein [Bartonella henselae str. Houston-1]
          Length = 403

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/331 (13%), Positives = 104/331 (31%), Gaps = 13/331 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  Q       +   ++ +        P ++ +++ +   PI    + K      F  ++
Sbjct: 45  MKKQIFFWLGALIFFILFMLVFGSILLPFVAGIVLAYFLNPIVQ-LLEKFRIRRVFGTIL 103

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T+ ++ +F+  L+ L      ++++ +      N         +           +   
Sbjct: 104 ITLFIVVVFVAALIILIPIISWQIQQFM------NDGLPVYINRIQTFFVEHDFDWVRRY 157

Query: 126 HLSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
             S P  L+   +  L  +   I  +     + G   ++     +   +  F+   D   
Sbjct: 158 FGSDPNELQSNIKGLLGQSSDFITSLLNSLLKSGKSLVNIVSLFVVAPVVAFYMLLDWPR 217

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +   +DSL         + I   + + I     G     +  G        +  +   + 
Sbjct: 218 MVTAVDSLIPRDHLETVRSIFHEMDRAIAGFVRGQGTACLILGGYYAIGLTITELNFGLL 277

Query: 244 LGVITAIMAMIP----GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           +G+   +++ +P        +    V+       N      + +   I  FI    L+P 
Sbjct: 278 IGMFIGLISFVPYIGTMSGFLLSVGVAWVQFYPNNWGWIIVVMVIFLIGQFIEGYILQPK 337

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           LVG  + L  +   F L       G  G+ I
Sbjct: 338 LVGSSVGLHPVWLMFALFAFSSLFGFTGMLI 368


>gi|188527586|ref|YP_001910273.1| membrane protein [Helicobacter pylori Shi470]
 gi|188143826|gb|ACD48243.1| membrane protein [Helicobacter pylori Shi470]
          Length = 348

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 65/363 (17%), Positives = 138/363 (38%), Gaps = 25/363 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  Q     + +      +Y  + F    L A ++    + +      +        + +
Sbjct: 1   MKAQYFFWILFLIGFYWMIYLYQDFLMDALIAGLLCVGFFQVKVFLDKRFFN--IASSFL 58

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +  + IVPL F+ Y     + E+        +    + +WL  I      +E  + 
Sbjct: 59  CVLVLASVLIVPLYFIVYKSSNIIFEI------NFEKFSALIKWLKGI-----ITENLSH 107

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +    +    E F   +   ++ + +S  G   L      +F++  LFFF+  G    
Sbjct: 108 FPTIHDGVSKFLENFNAASITGYLLKISSYVGKYSLKLITDALFILGLLFFFFYYGEKFY 167

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +   L     KKI   V  ++R   L   I  I EG+  G+     G      LG
Sbjct: 168 RYFLGVLP-LGINQSKKIFEEVAGILRIVLLTSLITVILEGVAFGAMIVWFGHDGWS-LG 225

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLV-- 301
           ++  + +++P  G  + +  ++IY L  GN+  A  + L+  + +  ++D  ++P L+  
Sbjct: 226 ILYGLASLVPAVGGALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVF 285

Query: 302 ------GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                    +K+  +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 286 IKKRIFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345

Query: 356 ISS 358
              
Sbjct: 346 ACE 348


>gi|69245951|ref|ZP_00603723.1| Protein of unknown function UPF0118 [Enterococcus faecium DO]
 gi|257880352|ref|ZP_05660005.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257891011|ref|ZP_05670664.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257894264|ref|ZP_05673917.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|258614696|ref|ZP_05712466.1| membrane protein [Enterococcus faecium DO]
 gi|260562344|ref|ZP_05832858.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|293563178|ref|ZP_06677636.1| transport protein [Enterococcus faecium E1162]
 gi|314939360|ref|ZP_07846601.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
 gi|314941563|ref|ZP_07848448.1| conserved hypothetical protein [Enterococcus faecium TX0133C]
 gi|314949610|ref|ZP_07852934.1| conserved hypothetical protein [Enterococcus faecium TX0082]
 gi|314953717|ref|ZP_07856592.1| conserved hypothetical protein [Enterococcus faecium TX0133A]
 gi|314992173|ref|ZP_07857617.1| conserved hypothetical protein [Enterococcus faecium TX0133B]
 gi|314997664|ref|ZP_07862594.1| conserved hypothetical protein [Enterococcus faecium TX0133a01]
 gi|68195481|gb|EAN09925.1| Protein of unknown function UPF0118 [Enterococcus faecium DO]
 gi|257814580|gb|EEV43338.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257827371|gb|EEV53997.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257830643|gb|EEV57250.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|260073268|gb|EEW61609.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|291604869|gb|EFF34345.1| transport protein [Enterococcus faecium E1162]
 gi|313588299|gb|EFR67144.1| conserved hypothetical protein [Enterococcus faecium TX0133a01]
 gi|313593276|gb|EFR72121.1| conserved hypothetical protein [Enterococcus faecium TX0133B]
 gi|313594301|gb|EFR73146.1| conserved hypothetical protein [Enterococcus faecium TX0133A]
 gi|313599622|gb|EFR78465.1| conserved hypothetical protein [Enterococcus faecium TX0133C]
 gi|313641345|gb|EFS05925.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
 gi|313644034|gb|EFS08614.1| conserved hypothetical protein [Enterococcus faecium TX0082]
          Length = 379

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 54/320 (16%), Positives = 113/320 (35%), Gaps = 15/320 (4%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L   F P+L A  I +   PI       +               +  F+V ++ +    
Sbjct: 40  MLSAIFLPLLVAGFIYYMFDPIVVFLEKHRIPR--------VFGFLLTFLVVIILVVLTV 91

Query: 86  MLEMKELVSKVVLANQHGIPVPR----WLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
           M  + +L+ + +   Q           WL+++       E    +L    +   LS + L
Sbjct: 92  MNVVPQLMEQTIQLTQSLPMYADETSKWLNEL---AQREEFKNFNLEEQLASANLSLSNL 148

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
               +  +    S+     + + + +  +   L F ++DG      L            +
Sbjct: 149 FNIILVSLSASVSKIISFMMQFFILLFTVPFILLFMFKDGHKFIDALSHFFPKAIRKELR 208

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +  + + + + +      + A+  G++   A  +   P  + L VI  I  +IP   P  
Sbjct: 209 QTVKELNETLSAYISSTILDALIIGVMSFLAMRIFDQPYSLLLAVICGITNIIPYVGPFI 268

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               +I + +  + F A  + L   +   +    ++P L G  + +  L     L+G   
Sbjct: 269 GAVPAIIVGLFISPFQALYMALSILVIQQLDGNLIKPLLFGKSMNIHPLTIILVLIGAGS 328

Query: 322 TMGLLGLFIGPVLMALIAVI 341
             G+LG+ I   + A+I  I
Sbjct: 329 VAGILGMLICIPVYAVIKTI 348


>gi|308184350|ref|YP_003928483.1| hypothetical protein HPSJM_02870 [Helicobacter pylori SJM180]
 gi|308060270|gb|ADO02166.1| hypothetical protein HPSJM_02870 [Helicobacter pylori SJM180]
          Length = 348

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 139/363 (38%), Gaps = 25/363 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  Q     + +      LY  + F    L A ++    + +      +   S+   + +
Sbjct: 1   MKAQYFFWILFLIGFYWILYLYQDFLMDALIAGLLCVGLFQVKVFLNKRF--SNVISSFL 58

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +  + IVPL F+ Y G   + E+        +    + +WL         +E  + 
Sbjct: 59  CVLFLASVVIVPLYFIVYKGSNVIFEI------NFEKLSALIKWLKG-----TITENLSH 107

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +    +    E F   +   ++ + +S  G   L      +F++  LFFF+  G    
Sbjct: 108 FPAIHDGVSKFLENFSAASITGYLLKISSYVGRYSLKLITDALFILGLLFFFFYYGERFY 167

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +   L     KKI   V  ++R   L   I  I EG+  G      G      LG
Sbjct: 168 RYFLGVLP-LGMNQSKKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFGHDGWS-LG 225

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLV-- 301
           ++  + +++P  G  + +  ++IY L  GN+  A  + L+  + +  ++D  ++P L+  
Sbjct: 226 ILYGLASLVPAVGGALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVF 285

Query: 302 ------GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                    +K+  +  FF ++ G+   G  G+ +GP + A    + +       + ++K
Sbjct: 286 IKKRIFKTTLKINEILIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQKEQK 345

Query: 356 ISS 358
              
Sbjct: 346 ACE 348


>gi|320335654|ref|YP_004172365.1| hypothetical protein Deima_3071 [Deinococcus maricopensis DSM
           21211]
 gi|319756943|gb|ADV68700.1| protein of unknown function UPF0118 [Deinococcus maricopensis DSM
           21211]
          Length = 367

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/350 (14%), Positives = 118/350 (33%), Gaps = 13/350 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYF--LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            +P       ++ +   S  F  L       L   I+ + + P+      ++   +    
Sbjct: 20  RSPWVRALVFLLMLYAASRVFGSLAHVIVLGLIGYIVAYLTNPLLIWLQRRRLPRAMG-- 77

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           VI  + V+  F+     L    + ++ +L+ K+    ++       L+            
Sbjct: 78  VIIVILVLLGFLALCSTLLVTVIGQLSDLIQKLPELARNTTTFIDRLA------QQHAFL 131

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI---IFMIIALFFFYRD 180
                  ++      + + +  + ++ ++ S        +  ++   + ++I   +   D
Sbjct: 132 VPLREQIENFTGGGLSQISSVVVPYLQKYQSSLLTGAFSFANTLAEGLAVLIIAIYMMLD 191

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   L       +  +   +SR V   +     G  +IA   G+++     + GVPS
Sbjct: 192 FDKIGLTLLRAFPRSWQPFVLNLSRDVEHAVGGYLRGQILIASCVGIIVAVGLAICGVPS 251

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
             ALG +     ++P    I     ++ L           + +       I    L P +
Sbjct: 252 APALGFLAGAFNIVPYLGVIIAITPALLLAAAAGWLKVVLVIVVFVFANQIEAHLLSPMI 311

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +G    L  +     ++ GV   G++G  +   L AL  ++ +E     K
Sbjct: 312 LGKSTNLHPVTVILAILAGVTLYGIVGALVAVPLAALGKLLIEEYYYPSK 361


>gi|317127498|ref|YP_004093780.1| sporulation integral membrane protein YtvI [Bacillus
           cellulosilyticus DSM 2522]
 gi|315472446|gb|ADU29049.1| sporulation integral membrane protein YtvI [Bacillus
           cellulosilyticus DSM 2522]
          Length = 379

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/350 (15%), Positives = 133/350 (38%), Gaps = 24/350 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFA----PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           I R++++  IL+S+ +L G+      P   A  + +   P+   F  K +  +    + A
Sbjct: 9   IARFVLVIFILISVVWLLGWLFTISYPFWIAAGLVWMFIPLIRLFRRKLKLPNGLAVLTA 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +  +   I     + +  ++ ++ + + V    +      +    +        +W + 
Sbjct: 69  LLIGLGTLIAFFTGIIFLIIIGVRRISTYVPEWIEVSSKQIQ----LFFNQSILPIWHRI 124

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMI--------------FLDYCLSIIFMII 172
                SL +  +  L+        + A+ FG +                 + +  +F+ +
Sbjct: 125 TGFTDSLTVEQQETLQGGITQLGSQVAAMFGEMGQGLADALGVLLVTVPSFLIGFLFVFL 184

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
           A +F  +D  +++ ++ +     F     +  +I    +        I+     +++   
Sbjct: 185 AFYFIGKDWDTLTTRVKNTVPPSFIKKGTEFRKIFRHRVLGFLRAQLILMGIASIIVFIG 244

Query: 233 YWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
             +  V     + +   I  ++P  G+        IYL + GN+     + +   + +  
Sbjct: 245 LTILRVDYAFNIALFVGIAEILPYLGSGTILIPWLIYLFLSGNVKLGIGIAVVYGVTIA- 303

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           V +T+ P ++   + L  L     L  G +  G+LGLFIGP ++ ++ ++
Sbjct: 304 VRQTIEPKILSSSMNLNALAVLLSLFIGFQIFGILGLFIGPFILVILVIL 353


>gi|170016980|ref|YP_001727899.1| permease [Leuconostoc citreum KM20]
 gi|169803837|gb|ACA82455.1| Predicted permease [Leuconostoc citreum KM20]
          Length = 385

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/331 (16%), Positives = 111/331 (33%), Gaps = 7/331 (2%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
           AP+L A ++ +   P+ +               I  + ++ +    L  +      ++  
Sbjct: 55  APILIAGVLYYLLSPLINLMSRYTRMPRRLSIAIILILLLAIIAGILAVVVIVLRDQIIA 114

Query: 92  LVS-KVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            ++            +               L   + +  QS+   S  +L T+G+  I 
Sbjct: 115 FINNWPDYWRTSQNFINETFKSAQFRPVREFLNNTNTNINQSMIDWSRKYL-TSGVAGIG 173

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
            FAS    + +    +       L++   DG   S  +             ++   + K 
Sbjct: 174 TFASTLTSVGVTAVST----PFILYYMLLDGHKFSAFISEKFPRKAQRSIGQLLTDISKQ 229

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
           I     G   +A    ++ G  Y + G+P  + L ++  I  MIP  G+ ++   V    
Sbjct: 230 IAQYIRGQLGVAFAVMVMFGIGYTVIGLPYGILLALMAGIFNMIPYVGSILAQVPVFAVA 289

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           LI G         +  AIE  I    + P ++G  + +  +     L+      G+LG+ 
Sbjct: 290 LIAGGPKLLILAIIVLAIEQPIEGHVIAPKILGEALSIHPVTVIVVLLSSGHIFGVLGVV 349

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           +     A+I VI        + N E      
Sbjct: 350 LAVPAYAVIKVIVTRIYTWWRSNSEFFKEEL 380


>gi|148263830|ref|YP_001230536.1| hypothetical protein Gura_1773 [Geobacter uraniireducens Rf4]
 gi|146397330|gb|ABQ25963.1| protein of unknown function UPF0118 [Geobacter uraniireducens Rf4]
          Length = 357

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/353 (14%), Positives = 125/353 (35%), Gaps = 8/353 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGF----FAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +N +     ++  ++ +    L  F    F PV  ALI+ +   P+    + +    +  
Sbjct: 1   MNNKEKFLAVLAGLLCIGAIILVYFSVTIFLPVFIALILTYILNPLVVMLVKRGMNRTVA 60

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           +  +    V+   +   LF+           ++    A +    +P  +         ++
Sbjct: 61  IIAVFCFLVLLAMLTGFLFISSLKAEFSTVQINLPEYAGRLYGYIPGEVKTYLDIETPAK 120

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            +    +  + L+ +S    K      +   A    + F+   L      I L++F  D 
Sbjct: 121 AYQHLNAALEELRGISFNLFKETFA--VVTRAFSSTLAFILAVLGYFITPIYLYYFLSDL 178

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  L         ++    V +V+ +   G   +     ++     ++ G+   
Sbjct: 179 SEMKSGMLDLIPERHRDRLRERVGEVNEVLSAFVCGQLSVCAILAVLYSIGLYVIGIDLA 238

Query: 242 VALGVITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V +G +   + +IP    I     ++++ LL   +  +      W A+        + P 
Sbjct: 239 VLIGTLAGALFIIPYFGTILGIIFSMTMALLKFHDFLHPLLCLGWFALVQAAEGGIITPK 298

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           +VG  + L  + T   L+ G +  G+ G+ +   + A++ V ++  +   +  
Sbjct: 299 IVGDKVGLHPIITILALLIGGQLFGIFGMLLAVPVTAVLNVFFRSLLDYYRRT 351


>gi|253681437|ref|ZP_04862234.1| permease [Clostridium botulinum D str. 1873]
 gi|253561149|gb|EES90601.1| permease [Clostridium botulinum D str. 1873]
          Length = 368

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/337 (14%), Positives = 116/337 (34%), Gaps = 3/337 (0%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           I+  S   +     P   A  I +   P+   F  K      F  +I  + ++    + +
Sbjct: 30  ILAGSFGVILAILTPFFWAFGIAYILNPLMMYFEKKFNFKRNFSILIVFLLLIGFITLTV 89

Query: 79  LFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
             +    +  + +L + +     +        ++     +  +    +  +   S    +
Sbjct: 90  TIISPAIINNVDQLANNIPTYVRKTQTWFYETITR--FNLSNNTTLIQFANKSLSNITNA 147

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            T    + ++     A      FL      I  +  L        +I   L S+ +    
Sbjct: 148 LTTSLNSFLNVALTKAIDITSSFLKMIFGFIISVYILKDKEVFQKNIKDFLYSIFKKKSV 207

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
             +      V  +     +G +I ++  GL+      +   P  + + ++  +  MIP  
Sbjct: 208 DSFLIFGCEVNTIFSQYIIGKSIDSLIIGLLCAIGLGILKTPYVLLISLLVGLTNMIPYF 267

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P      ++ + +  +   A  +F++  +        L P ++G  + +        + 
Sbjct: 268 GPFIGMIPAVLITLFSSPIKALWVFIFILVLQQFDGWVLGPKILGDKVGVSPFWIILAIT 327

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            G  T G+LG+F+G  ++A+I  + ++ I+    NK 
Sbjct: 328 VGGGTFGVLGMFLGVPIIAVIKTLLQKFILKRLNNKN 364


>gi|297157594|gb|ADI07306.1| integral membrane protein [Streptomyces bingchenggensis BCW-1]
          Length = 511

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 107/318 (33%), Gaps = 19/318 (5%)

Query: 17  MFIILVSLYFLKGFFAPV---LSALIIGFTSWPIYSSFISKKEES---STFLAVIATVSV 70
           + ++  ++Y L    + V   + +  +      +    +++             I  +S 
Sbjct: 156 LLVLAGTVYVLMTVISAVELVVLSFTVALLITAMLEPTVTRLRNRGVPRGLATAITFISG 215

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             +  + + F+ +  M    +L +KV         +  WL + P  +   ++     +  
Sbjct: 216 FIIMGLVIWFVVWQVMENADDLSNKVQAGID---DLRDWLLNSPFHVTEKQINQIANNLR 272

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            ++   +E                    + ++    I+  + +  F   DG  I      
Sbjct: 273 DAIGANTEELTSAGLEGV---------TVIVEVLTGILLAMFSTLFLLYDGPKIWAWFLK 323

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L                   + +   G  I+A+ + + +G   +   VP  V L V   +
Sbjct: 324 LVPAPAREGVAGAGPRAWTTLTAYVRGTVIVALIDAIFIGVGIFFLDVPMAVPLAVFIFL 383

Query: 251 MAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            A IP    +   A+++ + L+   ++ A  + +       I    L+PF++G  +++  
Sbjct: 384 FAFIPLVGAVVSGALAVVVALVTQGVWTAAMVLVVVLAVQQIEGHILQPFILGRAVRVHP 443

Query: 310 LPTFFGLVGGVRTMGLLG 327
           L     +  G    G+ G
Sbjct: 444 LAVVLSVAAGSLIGGIGG 461


>gi|296333166|ref|ZP_06875619.1| putative permease [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305675328|ref|YP_003867000.1| putative permease [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296149364|gb|EFG90260.1| putative permease [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305413572|gb|ADM38691.1| putative permease [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 353

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/330 (14%), Positives = 122/330 (36%), Gaps = 15/330 (4%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
             +K  F P++ ++ I +   P+      K            T+S++ ++I+    + + 
Sbjct: 37  LVIKTIFIPLIISIFISYLLLPVTEWLHGKGLPR--------TLSILVIYILFFGGIGWA 88

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
               +  L+ ++   +++        + +        +       P  +    +  ++  
Sbjct: 89  LYKGVPVLIVQLTDLSENIPMFAETYNGL-----LLHVHNHTDDWPDGMHHRVDKLIRQT 143

Query: 145 GIDFIPRFASRFGM--IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              F              LDY L    +   +F+  +D   + + +  L    +      
Sbjct: 144 ETFFAGTVEGAISGIRNVLDYFLIAATIPFLVFYMVKDIELMKKTVWYLTPKSWRKRGSA 203

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             R V   +     G  ++ +  G++ G  +W+ G+P  + LG+I+ I  +IP   P   
Sbjct: 204 FLRDVDDSLGDYIRGQLLVCLILGVMAGITFWIFGLPYPLILGLISGITNVIPYFGPFIG 263

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ + +  ++     + +   I  F+    L PF+VG  +K+  +     L+ G   
Sbjct: 264 AIPALLIAMTISVKAILVVVITVFILQFMEGNILSPFIVGRSLKMHPVVIMLALLAGGEL 323

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            G++G+ +     A++ V+    +    E+
Sbjct: 324 AGIVGMILAVPATAVLKVMMIHFLRMRTEH 353


>gi|229019611|ref|ZP_04176424.1| hypothetical protein bcere0030_41130 [Bacillus cereus AH1273]
 gi|229025850|ref|ZP_04182248.1| hypothetical protein bcere0029_41410 [Bacillus cereus AH1272]
 gi|228735461|gb|EEL86058.1| hypothetical protein bcere0029_41410 [Bacillus cereus AH1272]
 gi|228741691|gb|EEL91878.1| hypothetical protein bcere0030_41130 [Bacillus cereus AH1273]
          Length = 361

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 114/318 (35%), Gaps = 11/318 (3%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           ++  K    P L A  I +   P+      +            T++++ ++++    + Y
Sbjct: 42  IFVFKVAITPFLIACFIAYLLHPLIEKIHKEGMPR--------TLAILLIYVLFFGGIGY 93

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                   ++ ++   N+      +       G+           H +  +I      K 
Sbjct: 94  GIYKGTPIVIKQLQEINEQFPQFTKMYDSWMDGVTEQTANFPSFIHEKVKQIFGGVETK- 152

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             I  +           LD  L I  +   +F+  +D          L    + +  + +
Sbjct: 153 --IQALLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQML 210

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
           ++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI   
Sbjct: 211 AKEIDKSLGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGA 270

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G    
Sbjct: 271 IPTLMIAATVSTSLLIKAGITIAILQFLESNILSPYIVGKSLRMHPVIIMLALLVGGEVA 330

Query: 324 GLLGLFIGPVLMALIAVI 341
           G++GL I   ++A+I  +
Sbjct: 331 GIVGLLISVPVLAIIRTV 348


>gi|89098587|ref|ZP_01171470.1| hypothetical protein B14911_10257 [Bacillus sp. NRRL B-14911]
 gi|89086832|gb|EAR65950.1| hypothetical protein B14911_10257 [Bacillus sp. NRRL B-14911]
          Length = 361

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/344 (11%), Positives = 114/344 (33%), Gaps = 19/344 (5%)

Query: 14  WMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
            +++F++    +F+  F       F P+L + ++ +   P+         +         
Sbjct: 18  LVVIFLLGKIDWFIWPFRKLVATIFFPILISGLLYYILRPVIRWLSGYMPK--------- 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
             + + +    L+ +          L+++     Q     P  + D+             
Sbjct: 69  -TASILIVFGTLIGIGTGIFYFGGSLIAE--QITQISDSFPDKMEDLTSETKEMVDENDF 125

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                            + I+ +    +            +I +   LF+F +D   +  
Sbjct: 126 GFLSYEEIEQKVLSYSQSFINTVGSNLTGIISAITSIATVLIVVPFILFYFSKDDEKLRP 185

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           +L             +I   + K + +  +G  IIA  +G+++   Y + G+   + L +
Sbjct: 186 KLLKWIPDEHKIEGNRILLDIDKTLSTYIIGQFIIAFADGVLMYIGYLIIGLDYALVLAL 245

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
               + ++P   P+     +I++ +    F    + +       +    + P ++G  + 
Sbjct: 246 FATFLTVVPFLGPLLGIIPAIFVGLMQEPFMVIKILIVLVAVQQLEGNLITPQVMGKRLN 305

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +  L     L+      G +G+ +     +++ VI ++     +
Sbjct: 306 IHPLTVILVLLVAGSLYGFIGILVAIPFYSVVKVIVRDFWKFYR 349


>gi|227510017|ref|ZP_03940066.1| permease [Lactobacillus brevis subsp. gravesensis ATCC 27305]
 gi|227190512|gb|EEI70579.1| permease [Lactobacillus brevis subsp. gravesensis ATCC 27305]
          Length = 359

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 55/321 (17%), Positives = 110/321 (34%), Gaps = 7/321 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFIS----KKEESSTFLAVIATVSVMCLFIVPLLFL 81
           F    F PVL A I+ +   PI +        +K  S T+   +  + ++ + I+     
Sbjct: 30  FFSTIFIPVLLAGILYYMLNPIVNLLTKIPIGRKRVSRTWAVTLVFLLLLGIIILLATVF 89

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + ++  L + V  A   G  +      +        L     +        + T  
Sbjct: 90  IPKVLNQLMNLANNVPGAINDGQNLLE--KALKEMNSQQLLKKIDFTQLTQKFSTNITDY 147

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             +  + +            +  +  + + + LF+  +DG+ ++  + S           
Sbjct: 148 ANSFFNGLTSGIGGVISAAANAVIIAVTVPVVLFYMLKDGYRLAPNIKSFLPERHREQTM 207

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPI 260
            +   + + I     G  I  +  G      Y + G+P  + LGVI  I  +IP  G  I
Sbjct: 208 DLLSAMNRTISKYISGQMIECLFVGTFTAIGYLVIGLPYALLLGVIAGICNIIPYLGPYI 267

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
                 I     G   +     +   I   I    + P ++G  +++  L     L+   
Sbjct: 268 GIAPALIVSFSHGGWLSMVYNIVIVIIVQQIDGNLVYPNVIGKSLQIHPLTIIIILLAAG 327

Query: 321 RTMGLLGLFIGPVLMALIAVI 341
              GL+G+ +   L A++ VI
Sbjct: 328 NIAGLMGMILAVPLYAIVKVI 348


>gi|261418450|ref|YP_003252132.1| sporulation integral membrane protein YtvI [Geobacillus sp.
           Y412MC61]
 gi|319767590|ref|YP_004133091.1| sporulation integral membrane protein YtvI [Geobacillus sp.
           Y412MC52]
 gi|261374907|gb|ACX77650.1| sporulation integral membrane protein YtvI [Geobacillus sp.
           Y412MC61]
 gi|317112456|gb|ADU94948.1| sporulation integral membrane protein YtvI [Geobacillus sp.
           Y412MC52]
          Length = 341

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/332 (14%), Positives = 113/332 (34%), Gaps = 4/332 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           + RWMI+ ++     +L  +  P+L AL       P         +              
Sbjct: 1   MKRWMIIALLFAVGLWLVPYSVPLLFALATALLLEPSIRRLQENYKLKRAHAVTAIFSLF 60

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +  + L FL    + ++  L  K+         V   L       ++S +  + +   
Sbjct: 61  IIILGLSLYFLVVIFVQQVMALSQKLPYVLNEATKVLDRLIQT-WQSYSSSIPQEIIDSL 119

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           +      E  L +   +           I   + +  +  +IALF    D   + Q +  
Sbjct: 120 ERGVNTVEQMLLSFATNLTQSLVHYIAAI-PAFLIHFLVYLIALFLICLDLPQLKQGMRR 178

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                       +   + K          ++++    +  S  ++ GV     + ++  +
Sbjct: 179 YLSERTEQRLGMVVAQLSKAGIGFLKAQFLLSLITFFLALSGLFVLGVDYAALMALVIVV 238

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           + ++P  G         +  +  GN      L +   + + +V + + P +    + +  
Sbjct: 239 VDILPILGTGSVLVPWGLISMANGNNTLGIGLIVL-FVVITVVRRIIEPKVFSTNLGISP 297

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           L     +  G + +G +GLF+GPV++ L+  +
Sbjct: 298 LAALVSVYLGFQLLGFIGLFVGPVVVILVEAL 329


>gi|254779441|ref|YP_003057546.1| hypothetical protein HELPY_0810 [Helicobacter pylori B38]
 gi|254001352|emb|CAX29337.1| Conserved hypothetical protein; putative membrane protein
           [Helicobacter pylori B38]
          Length = 348

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 65/363 (17%), Positives = 138/363 (38%), Gaps = 25/363 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  Q     + +      +Y  + F    L A ++    + +      +   S+   + +
Sbjct: 1   MKAQYFFWILFLIGFYWMIYLYQDFLMDALIAGLLCVGLFQVKVFLDKRF--SNVISSFL 58

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +  + IVPL F+ Y     + E+        +    + +WL         +E  + 
Sbjct: 59  CVLILASVLIVPLYFIVYKSSNIIFEI------NFEKFSALIKWLKG-----TITENLSH 107

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +    +    E F   +   ++ + +S  G   L      +F++  LFFF+  G    
Sbjct: 108 FPAIHDGVSKFLENFSAASITGYLLKISSYVGRYSLKLITDALFILGLLFFFFYYGERFY 167

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +   L     KKI   V  ++R   L   I  I EG+  G      G      LG
Sbjct: 168 RYFLGVLP-LGVNQSKKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFGHDGWS-LG 225

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLV-- 301
           ++  + +++P  G  + +  ++IY L  GN+  A  + L+  + +  ++D  ++P L+  
Sbjct: 226 ILYGLASLVPAVGGALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVF 285

Query: 302 ------GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                    +K+  +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 286 IKKRIFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345

Query: 356 ISS 358
              
Sbjct: 346 ACE 348


>gi|315648828|ref|ZP_07901923.1| sporulation integral membrane protein YtvI [Paenibacillus vortex
           V453]
 gi|315275796|gb|EFU39148.1| sporulation integral membrane protein YtvI [Paenibacillus vortex
           V453]
          Length = 372

 Score = 88.4 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 58/350 (16%), Positives = 120/350 (34%), Gaps = 18/350 (5%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +F+    +Y L     P L A +I +   P  +      +        ++ +      ++
Sbjct: 19  IFVTAYLIYVLLPLLYPFLLAWVIAYAMNPCVNLLQQSMKLPRWVAVSLSLLLYFGAALL 78

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L       + E+  L       N H      WL+          +  +     Q+    
Sbjct: 79  ILTAAVTRLVKELITLSQ---SFNLHIDAWMDWLTSWTQNDSFQNIVNEIGRFYQNNPNY 135

Query: 137 SETFLK--TNGIDFIPRFASRFGMIFLDYCLS-----------IIFMIIALFFFYRDGFS 183
            ET  +  T     I    +       +  L             I ++++ FF       
Sbjct: 136 HETINQNVTRTTQTIGTAVTDLVTGIFNGILQIIYYLPNLGTIFIVVLLSTFFLSNSWER 195

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
            ++ L  +   +       I   + K +        I+      ++    +  GV S  A
Sbjct: 196 HNRALFRMIPGVIHKPMTYIFSDLKKALFGFAKAQLILISITAFIVMITLYALGVNSAFA 255

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           +G++  ++ ++P  G  I     S+Y  +  ++     L +  +I L IV + + P ++ 
Sbjct: 256 IGLLIGLVDLLPYLGVGIVLIPWSLYAFMSDDLTLGIGLTVLYSIIL-IVRQIMEPKVLA 314

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             + L  L   FG+  G++  G+LGL IGPV + ++    +  +     N
Sbjct: 315 SSVGLDPLAALFGMFVGLKLFGILGLIIGPVSLVIVDAFRRAHVFKDLRN 364


>gi|291544868|emb|CBL17977.1| Predicted permease [Ruminococcus sp. 18P13]
          Length = 439

 Score = 88.4 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/338 (14%), Positives = 116/338 (34%), Gaps = 22/338 (6%)

Query: 31  FAPVLSALIIGFTSWPIY-------SSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
            AP+   ++I + S P+          +I++K+E +  + VI+    M + I+ ++ + Y
Sbjct: 47  IAPITWGIVIAYLSTPLLTFFEKYLKKWINRKKEHNKLIRVISIFLCMSILILSIVGIVY 106

Query: 84  YGMLEMKELVSKVVLA-----NQHGIPVPRWLSD-IPGGMWASELWTKHLSHPQSLKILS 137
             + E+   +  +        N     +    +  I       E  T   S  Q + +  
Sbjct: 107 AVIPEIISSMKNIFTLLPDYLNNLQQYLTNRFNSFIQDNPELGEKLTNSFSSMQDMLLGL 166

Query: 138 ETFLKTNGIDFI---------PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                      +            A  F +   D+CL +   +  L+        I + +
Sbjct: 167 ADEYSPKLDSLLDKDGVVANVTSSAYAFLITLKDFCLGLFVSVYLLYSKELFLAQIKKVV 226

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +L       +  +I+          F G  + ++  G++      +  +P  + + ++ 
Sbjct: 227 HALFSKRHCEFIFRIASRTNYTFMHFFSGKAVDSLIIGMLCFIILTIMKMPYVLLISILV 286

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            +  M+P   PI     S  L++           ++  +        L P ++G  + L 
Sbjct: 287 GVTNMLPFFGPIIGAVPSGLLILLSEPDRTLAFVIFIILLQQFDGNILGPKILGNSLGLS 346

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
                F +  G      LG+     L A++   +++S+
Sbjct: 347 PFWIMFAIFLGGGMFNFLGMVAFVPLFAVLYAFFRDSV 384


>gi|254563925|ref|YP_003071020.1| hypothetical protein METDI5610 [Methylobacterium extorquens DM4]
 gi|254271203|emb|CAX27215.1| conserved hypothetical protein; putative membrane protein
           [Methylobacterium extorquens DM4]
          Length = 679

 Score = 88.4 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 114/357 (31%), Gaps = 24/357 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
               ++  II+  L+F +    P+  A+++ F   P+ + F+ + +    F  +++ +  
Sbjct: 30  ASSLVVFAIIVAGLFFAREVLIPIAIAVLLSFVLGPLVN-FLRRLKLGRAFAVLVSVLLA 88

Query: 71  MCLFIVPLLFLFYYGMLEMKEL--VSKVVLANQHGI------PVPRWLSDI--------- 113
             +       +        +++    + V     G+          ++++I         
Sbjct: 89  AGIIAAVTTVIGVQVAELAQDVPRYQRTVERKIEGLRAGTLGQTMDYIANINRAIHQSGE 148

Query: 114 --PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP--RFASRFGMIFLDYCLSIIF 169
                   ++      S+ ++     +  L             A+           +   
Sbjct: 149 ESKESAEKAKQQAARDSNRKAEPEPPKPLLVQVEERRPGPLELATTVLAPVAQPLATAGI 208

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
           + + L F       +  +L  L                 + +   FLG   +    G+V+
Sbjct: 209 VFVVLLFILMQREDLRDRLIRLAGSSDLHRTTVAMDDAARRLSRYFLGQLALNSAFGVVI 268

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL--FLWGAI 287
           G   W+ GVPS V  G+   +M  +P         + I L    +   +  L  FL  A+
Sbjct: 269 GVGLWIIGVPSPVLWGIFALVMRFVPYIGAFLSAVLPIALAAAVDPGWSMVLSTFLLFAL 328

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              IV + + P + G    +         +      G +GL +   L   + V+ + 
Sbjct: 329 VEPIVGQIIEPLVYGHSTGVSPFSVLVSALFWTWLWGPVGLLLSTPLTVCLVVLGRH 385


>gi|239828018|ref|YP_002950642.1| sporulation integral membrane protein YtvI [Geobacillus sp. WCH70]
 gi|239808311|gb|ACS25376.1| sporulation integral membrane protein YtvI [Geobacillus sp. WCH70]
          Length = 372

 Score = 88.4 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 129/352 (36%), Gaps = 16/352 (4%)

Query: 10  GIMRWMIMFIILV----SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
             +R++++  ++V    +LY++     P + A  I F   P+     +K +       ++
Sbjct: 8   SFIRFLLVIAVVVFGSMALYYVSTVTYPFIIAFFIAFLINPLVDFLETKTKMPRWLAVIV 67

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL---SDIPGGMWASEL 122
             + +  +    +  L    +   + L + V    Q  I     L     IP     + L
Sbjct: 68  TLIVLFAIVAGLVTLLIAEIVSGTQYLANVVPENFQKLITYMETLVAQQIIPLYNDLAVL 127

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI-------FLDYCLSIIFMIIALF 175
           +    +  Q   I +   + T     + +F                +     IF ++A F
Sbjct: 128 FKNLDASQQDTIINNIQAVGTQIATTVGQFIQHVLQNIPLLLAWLPNAATVFIFSLLATF 187

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F  +D + ++     +         K +   + K +         +     +++     +
Sbjct: 188 FISKDWYRLTGIAQKILPAKARKSGKTVFLDLKKALFGFIKAQATLISITTVIVLIGLLI 247

Query: 236 AGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
             V   + + +I  I+ ++P  G  I F    IY  + G++  A  L +   I + +  +
Sbjct: 248 LRVNYAITIALIIGIVDILPYLGTGIVFVPWIIYAAVSGDVPFAIGLGVLY-IVVLVQRQ 306

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            + P ++   I L  L T   L  G + +G LGL IGPV + +I  +   ++
Sbjct: 307 IMEPKVLSSSIGLDPLATLVALFVGFKLIGFLGLIIGPVTLVIIRTLHSANV 358


>gi|257882205|ref|ZP_05661858.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|293568382|ref|ZP_06679703.1| transport protein [Enterococcus faecium E1071]
 gi|294623135|ref|ZP_06702021.1| transport protein [Enterococcus faecium U0317]
 gi|257817863|gb|EEV45191.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|291588903|gb|EFF20730.1| transport protein [Enterococcus faecium E1071]
 gi|291597504|gb|EFF28669.1| transport protein [Enterococcus faecium U0317]
          Length = 379

 Score = 88.4 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 54/320 (16%), Positives = 113/320 (35%), Gaps = 15/320 (4%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L   F P+L A  I +   PI       +               +  F+V ++ +    
Sbjct: 40  MLSAVFLPLLVAGFIYYMFDPIVVFLEKHRIPR--------VFGFLLTFLVVIILVVLTV 91

Query: 86  MLEMKELVSKVVLANQHGIPVPR----WLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
           M  + +L+ + +   Q           WL+++       E    +L    +   LS + L
Sbjct: 92  MNVVPQLMEQTIQLTQSLPMYADETSKWLNEL---AQREEFKNFNLEEQLASANLSLSNL 148

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
               +  +    S+     + + + +  +   L F ++DG      L            +
Sbjct: 149 FNIILVSLSASVSKIISFMMQFFILLFTVPFILLFMFKDGHKFIDALSHFFPKAIRKELR 208

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +  + + + + +      + A+  G++   A  +   P  + L VI  I  +IP   P  
Sbjct: 209 QTVKELNETLSAYISSTILDALIIGVMSFLAMRIFDQPYSLLLAVICGITNIIPYVGPFI 268

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               +I + +  + F A  + L   +   +    ++P L G  + +  L     L+G   
Sbjct: 269 GAVPAIIVGLFISPFQALYMALSILVIQQLDGNLIKPLLFGKSMNIHPLTIILVLIGAGS 328

Query: 322 TMGLLGLFIGPVLMALIAVI 341
             G+LG+ I   + A+I  I
Sbjct: 329 VAGILGMLICIPVYAVIKTI 348


>gi|260584950|ref|ZP_05852694.1| membrane protein [Granulicatella elegans ATCC 700633]
 gi|260157380|gb|EEW92452.1| membrane protein [Granulicatella elegans ATCC 700633]
          Length = 391

 Score = 88.4 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 62/331 (18%), Positives = 126/331 (38%), Gaps = 13/331 (3%)

Query: 27  LKGFFA----PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           LKGFF+    P++ A I+ +   PI    + K    S  + +   + ++ L      F+ 
Sbjct: 50  LKGFFSIIGFPMVGAGILFYMVKPIQDFLVEKGVHKSVAILLNFILLIVLLLAAIFSFI- 108

Query: 83  YYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
                +++ELV+++ +        V R +          +L   ++   QSL       L
Sbjct: 109 PIVEKQLRELVTQLPIYYQIISQQVERVVQSNTFSAVQEQLNGINMDFLQSLGTRVNGLL 168

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                               ++ + II M I LF+  +DG  I   +  +          
Sbjct: 169 NVTFSGI-----GNVVGAVGEFMIGIITMPILLFYLLQDGEKILPAVLQVFPTRSRKRMS 223

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPI 260
            +   + + I S   G   +AI   ++    Y + G+P  V + ++   + +IP  G+  
Sbjct: 224 IVLTEMNQQISSYIRGQLTVAIAVAIMFSIGYAIIGLPYGVTIAILAGALNVIPYVGSFF 283

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
                 I   +  + +    +F+   IE  +  + + P ++G  +++  +     L+   
Sbjct: 284 GILPALIVGFVI-SPWMFVQVFIVFVIEQTLEGRIVSPLILGNSLQMHPVTILVVLLSTG 342

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           +  GL+GL +G    A++ VI        KE
Sbjct: 343 KIFGLVGLLLGVPGYAVLKVIISHIFDWYKE 373


>gi|315445776|ref|YP_004078655.1| permease [Mycobacterium sp. Spyr1]
 gi|315264079|gb|ADU00821.1| predicted permease [Mycobacterium sp. Spyr1]
          Length = 389

 Score = 88.4 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/301 (16%), Positives = 104/301 (34%), Gaps = 14/301 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             PV+ ALI     WP      +K         ++  +  + +    +  +    + + +
Sbjct: 50  VLPVVLALIACTVLWPPVRWLRNK-GVPPAAAVLVVLLLAVGVLAGVVAAVAPAIVEQSQ 108

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           EL  +        + V  WL   P  +  ++L         S        L ++      
Sbjct: 109 ELAEQASAGI---VQVRDWLGGPPLNISEAQL--------NSGVAAITDRLNSSSAQIAS 157

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              +  G       +++   I+  FFF +DG      L          +  ++   V   
Sbjct: 158 GVFTGVGAAT-SALVTLFAAIVVTFFFLKDGPGFIPWLRRTVGQPAAPHLAEVLDRVWTT 216

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
           +        +++  + +++G    + GVP   AL +IT I   IP  GA ++     +  
Sbjct: 217 LGGFIRTQALVSFVDAVLIGIGLVVLGVPLAYALAIITFIGGFIPIVGAFVAGGLAVLIA 276

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           L+     +A  +         +    L+P+L    +KL  +     +  G  T G++G F
Sbjct: 277 LVSNGPVDALIVLGIIVAVQQLEGNVLQPWLQSKSMKLHAVIVLLAVTLGASTFGVIGAF 336

Query: 330 I 330
           +
Sbjct: 337 L 337


>gi|208434487|ref|YP_002266153.1| membrane protein [Helicobacter pylori G27]
 gi|208432416|gb|ACI27287.1| membrane protein [Helicobacter pylori G27]
          Length = 348

 Score = 88.4 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 136/363 (37%), Gaps = 25/363 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  Q     + +      +Y  + F    L A ++    + +      +        + +
Sbjct: 1   MKAQYFFWILFLIGFYWMIYLYQDFLMDALIAGLLCVGFFQVKVFLDKRFFN--VVSSFL 58

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +  + IVPL F+ Y     + E+        +    + +WL         +E  + 
Sbjct: 59  CVLILASVLIVPLYFIVYKSSNIIFEI------NFEKFSALIKWLKG-----TITENLSH 107

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +    +    E F   +   ++ + +S  G   L      +F++  LFFF+  G    
Sbjct: 108 FPAIHDGVSKFLENFSAASITGYLLKISSYVGRYSLKLITDALFILGLLFFFFYYGERFY 167

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +   L     KKI   V  ++R   L   I  I EG+  G      G      LG
Sbjct: 168 RYFLGVLP-LGMNQSKKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFGHDGWS-LG 225

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLV-- 301
           ++  + +++P  G  + +  ++IY L  GN+  A  + L+  + +  ++D  ++P L+  
Sbjct: 226 ILYGLASLVPAVGGALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVF 285

Query: 302 ------GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                    +K+  +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 286 IKKRIFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345

Query: 356 ISS 358
              
Sbjct: 346 ACE 348


>gi|300118343|ref|ZP_07056090.1| permease [Bacillus cereus SJ1]
 gi|298724312|gb|EFI65007.1| permease [Bacillus cereus SJ1]
          Length = 373

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 121/326 (37%), Gaps = 5/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + FLK  F PVL A ++ +   P + S + KK  S         + V+ LF+
Sbjct: 41  ISFVFTPFIVFLKTIFFPVLLAGVLFYILHP-FVSLLEKKGVSRIVSIASIYLIVIGLFV 99

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +L +      ++  L+  +           R      G         ++L+   +  +
Sbjct: 100 FLVLTVIPIIKDQIDALIDNLPYFGHEIERAARRF----GESNLLGKIQENLNIDVASMV 155

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   T  +  +    + F     +  L+ + +   LF+  +DG  +           
Sbjct: 156 KDYTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQ 215

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +I   +   I S   G  I+++  G++L   Y + G+   V L ++  I+ ++P
Sbjct: 216 RQPAAMRILDEMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVP 275

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI     ++ +    +      + +   +      K + P ++G  + +  +   F 
Sbjct: 276 YVGPIIAITPALIIAFIDSPGMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFI 335

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++      G++G+ +     A++ V+
Sbjct: 336 ILTAGNLFGIMGIILAIPGYAILKVL 361


>gi|325292516|ref|YP_004278380.1| permease [Agrobacterium sp. H13-3]
 gi|325060369|gb|ADY64060.1| putative permease [Agrobacterium sp. H13-3]
          Length = 379

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/327 (14%), Positives = 113/327 (34%), Gaps = 9/327 (2%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T L  Q      ++ + +  L        P ++ + + +   P+      +   S     
Sbjct: 8   TSLRRQVFFWIGVLAVFIFFLMVFSSILLPFVAGMALAYFLDPVADWLERR-GLSRLMAT 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           V+  V+ + +F + L+ +      +  E ++++         +           W S   
Sbjct: 67  VVILVTFVLIFALSLIIIIPLIAAQASEFITRIPQYISSLQQLIAGADANLLPDWVSNQI 126

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +   L      F+ T     +       G   +D    ++   +  F+   D   
Sbjct: 127 NAVKENFSKLLTEGAGFIGT-----LLTQIWNSGKSLVDVMSLLVVTPVVAFYLLLDWDR 181

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  ++DS     +    ++I+R + + I     G   + +  G+       L G+   + 
Sbjct: 182 MIDKVDSWIPRDYVHTVRQIARDMDRTIAGFVRGQGSLCLILGVYYAVGLSLVGLNFGLL 241

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE---LFIVDKTLRPFL 300
           +G+ + +++ IP    +    +++ + I     +   +FL  A+     FI    L+P L
Sbjct: 242 IGLFSGLISFIPYIGSMVGLILAVGVAIVQFWPDYIYVFLTLAVFFSGQFIEGNILQPKL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           VG  + L  +   F L       G +G
Sbjct: 302 VGSSVGLHPVWLMFALFAFGALFGFVG 328


>gi|297202022|ref|ZP_06919419.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
 gi|197714344|gb|EDY58378.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
          Length = 367

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 123/343 (35%), Gaps = 17/343 (4%)

Query: 21  LVSLYFLKGFFA---PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            VSL+ L   ++   P++  L++   +WP  + F+ ++       A   TV  + +    
Sbjct: 28  AVSLWVLGRMWSVVWPLVIGLLLTTLTWPP-TRFLLRRGWKPALAASTVTVLFLLVAAGV 86

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +  +      +  +L   VV   Q        + +   G   +    +      +    +
Sbjct: 87  VALIAVPVASQSGDLTDGVVDGVQK-------VREWAAGPPLNIGDAQIDKAFDTAVSRA 139

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
           +  L +     +   ++      ++  ++ +  +  +FFF +DG      L         
Sbjct: 140 QDGLGSMVGAVVTGVST-----VVNGLVTAVLALFLMFFFLKDGPRFLPWLARQLPGRLS 194

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-G 256
                ++      + S       + + + +++G   W+ GVP  + L V+T + A +P  
Sbjct: 195 TDVPTVAARGWDTLGSFVRSQAAVGLIDAVLIGLGLWILGVPLVLPLAVLTFVSAFVPIL 254

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           GA  +     +  L+   + +A  +     +   +     +P +    + L        +
Sbjct: 255 GAFFAGFVAVLIALVSNGLMDALIVLAIIVVVQQLEGNVFQPMIQSRGLGLHAAVILLAV 314

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             G    G++G  +     ALIAVIW      ++E  +   ++
Sbjct: 315 TLGGSLAGIVGSLLAVPAAALIAVIWNYVREQLQEPSQDPGTD 357


>gi|293379019|ref|ZP_06625173.1| putative membrane protein [Enterococcus faecium PC4.1]
 gi|292642361|gb|EFF60517.1| putative membrane protein [Enterococcus faecium PC4.1]
          Length = 334

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/314 (16%), Positives = 112/314 (35%), Gaps = 15/314 (4%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            P+L A  I +   PI       +            +  +  F+V ++ +    M  + +
Sbjct: 1   MPLLVAGFIYYMFDPIVVFLEKHRIPR--------VLGFLLTFLVVIILVVLAVMNVVPQ 52

Query: 92  LVSKVVLANQHGIPVPR----WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           LV + +   Q           WL+++       E    +L    +   LS + L    + 
Sbjct: 53  LVEQTIQLTQSLPIYADETSKWLNEL---AQREEFKNFNLEEQLASANLSLSNLFNIILV 109

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            +    ++     + + + +  +   L F ++DG      L            ++  + +
Sbjct: 110 SLSASVTKIISFMMQFFILLFTVPFILLFMFKDGHKFIDALSHFFPKAIRKELRQTVKEL 169

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
            + + +      + A+  G++   A  +   P  + L VI  I  +IP   P      +I
Sbjct: 170 NETLSAYISSTILDALIIGVMSFLAMRIFNQPYSLLLAVICGITNIIPYVGPFIGAVPAI 229

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            + +  + F A  + L   +   +    ++P L G  + +  L     L+G     G+LG
Sbjct: 230 IVGLFISPFQALYMALSILVIQQLDGNLIKPLLFGKSMNIHPLTIILVLIGAGSVAGILG 289

Query: 328 LFIGPVLMALIAVI 341
           + I   + A+I  I
Sbjct: 290 MLICIPVYAVIKTI 303


>gi|225181973|ref|ZP_03735406.1| protein of unknown function UPF0118 [Dethiobacter alkaliphilus AHT
           1]
 gi|225167335|gb|EEG76153.1| protein of unknown function UPF0118 [Dethiobacter alkaliphilus AHT
           1]
          Length = 354

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/326 (15%), Positives = 126/326 (38%), Gaps = 13/326 (3%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
             +   L  FF  +    I+ +   P+     +++            + ++ ++ V    
Sbjct: 36  AAAFLVLLPFFLAI----ILAYILNPLVEFLENRRIPRH--------LGILLIYAVFFST 83

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           +F  G+  +  L+ ++    +      R +      + +         + + +   +   
Sbjct: 84  IFLIGISTIPTLLLELQKLGEKIPDYTRHVQSFLLHLQSDYQRINMPENIRLVLDENIVA 143

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           L+ N  D + R       +F     +I+ + + +++  RD  S+ +    L    +  + 
Sbjct: 144 LQENLQDVVERVTGTVLSLFAH-TFTILIIPLLVYYILRDMESLKRSFVMLFPSRYRKWV 202

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             +   + + + + F GM +I+   GL+      + GV   + LG+I  +  +IP   P+
Sbjct: 203 ASMGSEMDRTLGAYFRGMLLISFLVGLLTYVGLTIIGVDFSLLLGIIAGLTNIIPYFGPL 262

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
                ++ + +  +   A  + +   I   I  + + P ++G  + L  L   F L+ G 
Sbjct: 263 IGAVPAVLIGLLHSPALALQVVVVIVIVQQIESQFITPQILGRSLGLHPLIVIFVLIVGG 322

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESI 346
           R  GL+GL       A++ + +K +I
Sbjct: 323 RFFGLVGLIFAVPFAAMVRIFFKHAI 348


>gi|227552578|ref|ZP_03982627.1| permease [Enterococcus faecium TX1330]
 gi|257888193|ref|ZP_05667846.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257896916|ref|ZP_05676569.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|227178327|gb|EEI59299.1| permease [Enterococcus faecium TX1330]
 gi|257824247|gb|EEV51179.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257833481|gb|EEV59902.1| conserved hypothetical protein [Enterococcus faecium Com12]
          Length = 379

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/320 (16%), Positives = 114/320 (35%), Gaps = 15/320 (4%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L   F P+L A  I +   PI       +            +  +  F+V ++ +    
Sbjct: 40  MLSAIFLPLLVAGFIYYMFDPIVVFLEKHRIPR--------VLGFLLTFLVVIILVVLAV 91

Query: 86  MLEMKELVSKVVLANQHGIPVPR----WLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
           M  + +LV + +   Q           WL+++       E    +L    +   LS + L
Sbjct: 92  MNVVPQLVEQTIQLTQSLPIYADETSKWLNEL---AQREEFKNFNLEEQLASANLSLSNL 148

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
               +  +    ++     + + + +  +   L F ++DG      L            +
Sbjct: 149 FNIILVSLSASVTKIISFMMQFFILLFTVPFILLFMFKDGHKFIDALSHFFPKAIRKELR 208

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +  + + + + +      + A+  G++   A  +   P  + L VI  I  +IP   P  
Sbjct: 209 QTVKELNETLSAYISSTILDALIIGVMSFLAMRIFNQPYSLLLAVICGITNIIPYVGPFI 268

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               +I + +  + F A  + L   +   +    ++P L G  + +  L     L+G   
Sbjct: 269 GAVPAIIVGLFISPFQALYMALSILVIQQLDGNLIKPLLFGKSMNIHPLTIILVLIGAGS 328

Query: 322 TMGLLGLFIGPVLMALIAVI 341
             G+LG+ I   + A+I  I
Sbjct: 329 VAGILGMLICIPVYAVIKTI 348


>gi|294498661|ref|YP_003562361.1| putative membrane protein YueF [Bacillus megaterium QM B1551]
 gi|294348598|gb|ADE68927.1| putative membrane protein YueF [Bacillus megaterium QM B1551]
          Length = 363

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 58/342 (16%), Positives = 121/342 (35%), Gaps = 5/342 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+ L    F+   F P+L A  + F   PI S    KK    T   ++  V  + +  
Sbjct: 26  ISFVFLPIGVFISTLFFPILVAGFLFFLFEPIVSFLTRKKVP-KTLAILLLYVVFIGVIA 84

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +  +      ++ +L   +             LS+     W  E     L H +   +
Sbjct: 85  SIVGGVGPTLSKQLTDLAKNIPSYIVETREYINDLSNSRWFNWLVEQKYVSLDHIEESLL 144

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              + L TN  + I    S    I     L+++ +   LF+  +D   + +    +    
Sbjct: 145 NYASTLPTNLTNSISSVLSVVTNIT----LTVVTVPFILFYMLKDSHKLRKNTLRMVPPS 200

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +  +     + +   G  ++ +  G+     Y + G+P  + L +I A+  +IP
Sbjct: 201 YRKETLRTMKETTNTLATYIQGQMLVCLFVGISTFIGYLIIGLPYALILALIGALTNIIP 260

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I   +    + P ++G  +    L     
Sbjct: 261 YVGPFIGVAPALIVGLLYSPTKAVLVIIVVVIVQQLDGNIISPLVIGKKLNTHPLTIIIL 320

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           L+      G+LG+ +     A+   I    +  I+   + I 
Sbjct: 321 LLVAGNIAGILGMILAIPAYAVTKTIVINIVRMIQFRNKSIK 362


>gi|254830431|ref|ZP_05235086.1| hypothetical protein Lmon1_03682 [Listeria monocytogenes 10403S]
          Length = 390

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 57/336 (16%), Positives = 120/336 (35%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI    +  LK   AP++ A I  +   PI       K +   +   +  + ++ L I
Sbjct: 37  IAFIFDPLMVILKTVAAPIILAGISYYLFNPIIDWLEKHKWKR-GWAIALLYLVIIGLLI 95

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +   F+      ++  L                  S         +    ++S       
Sbjct: 96  LLFSFVIPAVKDQIVSLFKSFPGYWDQITQKFDEFSRSSLFDQLKDKLNTNMSDIMKTLS 155

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                  T+ I+              +  L+I+   + LF+  +DG  +   L  +    
Sbjct: 156 TK----GTSVINSSISSIGSIVGTVTEVVLAIVTTPLVLFYLLKDGKKLPDFLLKMLPVN 211

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
             A+ +++       I S   G  I+++  G++L   Y + G+P  + L +I A  +++P
Sbjct: 212 GRAHTRQVLGEANHQISSYIRGQIIVSLCIGILLFIGYLIIGLPYALTLAIIAACTSIVP 271

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P      +I + I  + +    L +   +   +  K + P ++G  +K+  +   F 
Sbjct: 272 YLGPAIAITPAIIIAIVTSPWLLIKLIIVWCVVQLLEGKFISPQVMGKTLKVHPITILFV 331

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           ++      G+LG+       A++ VI     +  K 
Sbjct: 332 ILVAGNLFGVLGVIFAVPGYAVLKVIVTHVFIWFKR 367


>gi|219847676|ref|YP_002462109.1| hypothetical protein Cagg_0749 [Chloroflexus aggregans DSM 9485]
 gi|219541935|gb|ACL23673.1| protein of unknown function UPF0118 [Chloroflexus aggregans DSM
           9485]
          Length = 417

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/352 (15%), Positives = 120/352 (34%), Gaps = 21/352 (5%)

Query: 9   QGIMRWMIMFI-ILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + + RW+++ + I +  + +        P +   ++ +   P+ + F            +
Sbjct: 10  RRVARWLLVAVSIYLVGWLISHTGSAITPFVFGGVLAYLFLPLVNFFERWMP--RWLAIL 67

Query: 65  I-------ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
           +       A V+ +   I PL+      +  + ++ +    AN+      + L+ +P  +
Sbjct: 68  VVYLLTFGALVAAIAFVIPPLIAQIVELIRTLPDIATIQREANRLLDEYEQLLASLPPAI 127

Query: 118 WASELWTKHLSHPQSLKILSETFLK--TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
            +        +  + L  L   F+        F+        +  + + L    +   LF
Sbjct: 128 QSEVQSAIASAASEGLSTLRANFVSYLQGIGQFLITSVLSV-VNTVTFLLGFFLVPFWLF 186

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           +   D  +    L+ L      A +  +  I+   +     G  I+    GL        
Sbjct: 187 YVLMDQRAGRDYLNRLIHPRLRADFWAMVSIIDYDLSGYLRGQLILGTSVGLAAWIGLTA 246

Query: 236 AG-----VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
                  VP  V L V+  +  ++P   PI     +I L +  +   A  + +       
Sbjct: 247 LNMAGMKVPYTVLLAVVAGVTEVVPVIGPIIGAIPAILLGLADSPTTALAVTILYIAIQQ 306

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           + +  L P ++G  + +        LV   +  GLLG  +   L A+   ++
Sbjct: 307 LENHILVPRIIGESVGVHPAILMVVLVVCSQVFGLLGAILSAPLSAMARDLF 358


>gi|320451497|ref|YP_004203593.1| permease [Thermus scotoductus SA-01]
 gi|320151666|gb|ADW23044.1| permease [Thermus scotoductus SA-01]
          Length = 365

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 59/333 (17%), Positives = 120/333 (36%), Gaps = 8/333 (2%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
               + +L+A  I + + P+   F +K+      L V+     + LF+    FL    +L
Sbjct: 34  WPALSILLTAFAIAYLTHPVVRFFEAKRLPR--LLGVVLVYLGLGLFLGLASFLTAQTVL 91

Query: 88  EMKELVSKVVLA----NQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
           E+  L  ++           + +P  +  IP       +  +   + Q L       L  
Sbjct: 92  ELSRLAQELPALLDPFLSWLLDLPNRVRTIPIPETLRPVLAEASRNLQGLLQGFLETLVR 151

Query: 144 NGIDFIPRFASRFG--MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                + +  +  G     L     ++  +    +F  D   ++Q    +    +     
Sbjct: 152 WLQGLLSQGGNLLGFFTSLLGGIFQLLTALTLSIYFLYDLPRLAQAALKVFPEPYQPLVA 211

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +++  + + +     G  ++A   GL++G   WL GVP   +LG +  +  +IP    I 
Sbjct: 212 ELAHKLDQSVGGYVRGQLLVAFLVGLLVGVGLWLVGVPLAASLGFLAGVFNLIPFVGVIV 271

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               ++ L   G         L   +   +    L PF+VG   +L  +     ++ G  
Sbjct: 272 SGVPALLLAATGGWGKVLLALLVLWLANQLEGNLLGPFIVGRSTRLHPVTAIAAILVGAT 331

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             GL G  +G    A + V+ +E     +  +E
Sbjct: 332 LFGLWGALLGVPTAAFLKVLLEEYYKKSRFYRE 364


>gi|289423261|ref|ZP_06425072.1| putative permease [Peptostreptococcus anaerobius 653-L]
 gi|289156361|gb|EFD05015.1| putative permease [Peptostreptococcus anaerobius 653-L]
          Length = 424

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/378 (13%), Positives = 120/378 (31%), Gaps = 29/378 (7%)

Query: 2   RETMLNPQGIMRWMIMFIILVS-----LYFLKGFFAPVLSALIIGFTSW----PIYSSFI 52
           R + +    ++ ++ + I+  +     L  L    +P++   +I F       PI    +
Sbjct: 5   RISTIKTIFLIAFLALVILNFTNILNNLGILLEVLSPIMMGCVIAFVLNTIVTPIEDKLL 64

Query: 53  SKKEES------STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV 106
           S+ +             V+A +    L  + +  +       +   V          + +
Sbjct: 65  SRIDNKFINKIKRMVSIVLALLISFSLVFLIMKLIVPEVKNSLATFV----------VQL 114

Query: 107 PRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLS 166
           P     +   +       +      +L +          +                   S
Sbjct: 115 PDIYEIVKKEIIKIIPSAQENLSSTNLNVQEIANKGFETVSAWAGGIFSLVNSVFGVLAS 174

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK----ISRIVPKVIRSTFLGMTIIA 222
           ++   I   +      ++++Q D L +   P    K       +     ++ F G  I A
Sbjct: 175 VVMASILAIYIVSSKETLTRQFDKLFKKFIPERIIKPMYYFFDVSNSTFKAFFTGQFIEA 234

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF 282
           I  G++         +P    +G    + A++P             +L+  + F A    
Sbjct: 235 IILGVLCTLGMAALRLPYASMVGSFVGLTALVPMVGAYLGCIFGFLMLLPVSPFKAMVFI 294

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           ++  +   I    + P +VG  + LP +     ++ G     ++G+F G  + A+I  I 
Sbjct: 295 IFLLVLQQIEGNVIYPRVVGSSVGLPGMWVLVSVIVGGGLFNMVGIFFGVPVTAVIYKIL 354

Query: 343 KESIMAIKENKEKISSNF 360
           K+ + +          NF
Sbjct: 355 KDQVNSGSTKIADRVENF 372


>gi|218532897|ref|YP_002423713.1| hypothetical protein Mchl_5020 [Methylobacterium chloromethanicum
           CM4]
 gi|218525200|gb|ACK85785.1| protein of unknown function UPF0118 [Methylobacterium
           chloromethanicum CM4]
          Length = 679

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 114/357 (31%), Gaps = 24/357 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
               ++  II+  L+F +    P+  A+++ F   P+ + F+ + +    F  +++ +  
Sbjct: 30  ASSLVVFAIIVAGLFFAREVLIPIAIAVLLSFVLGPLVN-FLRRLKLGRAFAVLVSVLLA 88

Query: 71  MCLFIVPLLFLFYYGMLEMKEL--VSKVVLANQHGI------PVPRWLSDI--------- 113
             +       +        +++    + V     G+          ++++I         
Sbjct: 89  AGIIAAVTTVIGVQVAELAQDVPRYQRTVERKIEGLRAGTLGQTMDYIANINRAIHQSGE 148

Query: 114 --PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP--RFASRFGMIFLDYCLSIIF 169
                   ++      S+ ++     +  L             A+           +   
Sbjct: 149 ESKESAEKAKQQAARDSNRKAEPEPPKPLLVQVEERRPGPLELATTVLAPVAQPLATAGI 208

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
           + + L F       +  +L  L                 + +   FLG   +    G+V+
Sbjct: 209 VFVVLLFILMQREDLRDRLIRLAGSSDLHRTTVAMDDAARRLSRYFLGQLALNSAFGVVI 268

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL--FLWGAI 287
           G   W+ GVPS V  G+   +M  +P         + I L    +   +  L  FL  A+
Sbjct: 269 GVGLWIIGVPSPVLWGIFALVMRFVPYIGAFLSAVLPIALAAAVDPGWSMVLSTFLLFAL 328

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              IV + + P + G    +         +      G +GL +   L   + V+ + 
Sbjct: 329 VEPIVGQIIEPLVYGHSTGVSPFSVLVSALFWTWLWGPVGLLLSTPLTVCLVVLGRH 385


>gi|40063569|gb|AAR38358.1| permease, putative [uncultured marine bacterium 582]
          Length = 361

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 59/339 (17%), Positives = 119/339 (35%), Gaps = 14/339 (4%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            I+  +L+FL     P L    + +   P+      +   S     V  TVSV+ +FIV 
Sbjct: 23  AILFGALWFLGDILMPFLLGGAVAYFLDPVADRLE-RLGLSRLLATVCITVSVILVFIVF 81

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
              +    + +   L        +         +  P  + +     K L          
Sbjct: 82  AFLVIPTLVQQAVTLFDTAPRLVRELQEFLT--TQFPSLVDSESTLRKSLLALGDQ---- 135

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              ++  G   +    +      ++  L ++ + +  F+   D   +   +D +      
Sbjct: 136 ---VQNKGGQLLKSLLTS-AASLINIALLLVIVPVVTFYLLYDWDRLVATIDDMLPRDHA 191

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
              + ++  + + + S   GM  + +  G     A  L G+   + +G I  ++  IP  
Sbjct: 192 DVVRGLALEIDQTLASFVRGMGTVCLILGTYYALALMLVGLQFGLVVGFIAGLVTFIPYV 251

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELF---IVDKTLRPFLVGGPIKLPFLPTFF 314
             +   +++I L +     +   L L GAI +    I    L P LVG  + L  +   F
Sbjct: 252 GALVGGSLAIGLGLFQFWGDWVSLGLVGAIFVTGQMIEGNYLTPKLVGLSVGLHPVWLLF 311

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L       G  G+ +   + A I V+ + +I   K ++
Sbjct: 312 ALSVFGSLFGFAGMLVAVPVAAAIGVLTRFAIGRYKRSR 350


>gi|322389894|ref|ZP_08063434.1| membrane protein [Streptococcus parasanguinis ATCC 903]
 gi|321143330|gb|EFX38768.1| membrane protein [Streptococcus parasanguinis ATCC 903]
          Length = 391

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/335 (14%), Positives = 111/335 (33%), Gaps = 5/335 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI +    F      PV+ + ++ +   PI   F+ +K     F        +  L I
Sbjct: 42  ITFIFIPIFEFAGAVMLPVIISGLLYYLLNPIVD-FLERKGLKRIFAISFVFFLIAVLLI 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L  +      ++      +    +          D            +      +   
Sbjct: 101 WGLAVVIPSVQRQVVSFFHNLPTYLEKANATIDDFLDNRVSSDIKPQLDEITKELSANIT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              + +    ++++         +     +++I M   +F+  RDG ++   +       
Sbjct: 161 SWASSISGRAVNWVSNLIGVASQV----IVALIIMPFIVFYLLRDGKNLKGHIVRFLPTK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                +++   V   + +   G   +AI   ++    + + G+   V LG+   I+ +IP
Sbjct: 217 IRKSAEQVLSDVNTQLSNYVRGQITVAIVVAIMFIIFFKIIGLRYAVTLGISAGILNLIP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +  A+E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLVAGPEMFIKVLIVFAVEQTIEGRFVSPLVLGSQLNIHPITILFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+      G+ G+F+G  + A   V+        K
Sbjct: 337 LLTSGSMFGIWGVFLGIPVYASAKVVIGAIFEWYK 371


>gi|229158006|ref|ZP_04286077.1| hypothetical protein bcere0010_41850 [Bacillus cereus ATCC 4342]
 gi|228625459|gb|EEK82215.1| hypothetical protein bcere0010_41850 [Bacillus cereus ATCC 4342]
          Length = 361

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 114/318 (35%), Gaps = 11/318 (3%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           ++  K    P L A  I +   P+      +   S        T++++ ++I+    + Y
Sbjct: 42  IFVFKVAITPFLIACFIAYLLHPLIEKIHKEGMPS--------TLAILLIYILFFGGIGY 93

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                   ++ ++   N+      +       G+      T +       K+        
Sbjct: 94  GIYKGTPVVIKQLQEINEQFPQFTKMYDSWMDGVTEQ---TANFPSFIHEKVKQIFIGVE 150

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             I  +           LD  L I  +   +F+  +D          L    + +  + +
Sbjct: 151 TKIQALLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQIL 210

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
           ++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI   
Sbjct: 211 AKEIDKSLGSYIRGQLFVCLVLGGVSALSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGA 270

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G    
Sbjct: 271 IPTLMIAATVSTSLLVKAGITIAILQFVESNILSPYIVGKSLRMHPVVIMLALLVGGEVA 330

Query: 324 GLLGLFIGPVLMALIAVI 341
           G++GL I   ++A+I  +
Sbjct: 331 GIVGLLISVPVLAVIRTV 348


>gi|163853956|ref|YP_001641999.1| hypothetical protein Mext_4560 [Methylobacterium extorquens PA1]
 gi|163665561|gb|ABY32928.1| protein of unknown function UPF0118 [Methylobacterium extorquens
           PA1]
          Length = 668

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 114/357 (31%), Gaps = 24/357 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
               ++  II+  L+F +    P+  A+++ F   P+ + F+ + +    F  +++ +  
Sbjct: 19  ASSLVVFAIIVAGLFFAREVLIPIAIAVLLSFVLGPLVN-FLRRLKLGRAFAVLVSVLLA 77

Query: 71  MCLFIVPLLFLFYYGMLEMKEL--VSKVVLANQHGI------PVPRWLSDI--------- 113
             +       +        +++    + V     G+          ++++I         
Sbjct: 78  AGIIAAVTTVIGVQVAELAQDVPRYQRTVERKIEGLRAGTLGQTMDYIANINRAIHQSGE 137

Query: 114 --PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP--RFASRFGMIFLDYCLSIIF 169
                   ++      S+ ++     +  L             A+           +   
Sbjct: 138 ESKESAEKAKQQAARDSNRKAEPEPPKPLLVQVEERRPGPLELATTVLAPVAQPLATAGI 197

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
           + + L F       +  +L  L                 + +   FLG   +    G+V+
Sbjct: 198 VFVVLLFILMQREDLRDRLIRLAGSSDLHRTTVAMDDAARRLSRYFLGQLALNSAFGVVI 257

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL--FLWGAI 287
           G   W+ GVPS V  G+   +M  +P         + I L    +   +  L  FL  A+
Sbjct: 258 GVGLWIIGVPSPVLWGIFALVMRFVPYIGAFLSAVLPIALAAAVDPGWSMVLSTFLLFAL 317

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              IV + + P + G    +         +      G +GL +   L   + V+ + 
Sbjct: 318 VEPIVGQIIEPLVYGHSTGVSPFSVLVSALFWTWLWGPVGLLLSTPLTVCLVVLGRH 374


>gi|325569862|ref|ZP_08145856.1| permease [Enterococcus casseliflavus ATCC 12755]
 gi|325156985|gb|EGC69153.1| permease [Enterococcus casseliflavus ATCC 12755]
          Length = 394

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/334 (16%), Positives = 114/334 (34%), Gaps = 6/334 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F    FAPVL A  + +   PI    +   +    F  ++  + ++   I+  + +    
Sbjct: 63  FFSTLFAPVLIAGFLYYLLNPIVLFLMKTTKIKRLFAVILVLLLLVAAIILIFVSVIPNL 122

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  L   +    ++       ++D P            ++       LS   L    
Sbjct: 123 VSQITSLAENIPTFAKNMESWISRIADDPFFKQID------IAQQLENLNLSYGSLLQQF 176

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +               + I+ +   LF+  +DG  +   L ++           +  
Sbjct: 177 LSGLSTSLGSIVSTIASATMIIVTVPFILFYMLKDGEKLVPNLKTVFPERRRDQIVGLLG 236

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K + +   G  I  I         YW+ GV      GVI  +  +IP   P      
Sbjct: 237 DLNKTLSNYISGQAIECIFVATFTFIGYWMIGVNYAFLFGVIAGVTNLIPYLGPYLGLIP 296

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +    F A    +   +   +    + P ++G  + +  L     L+      GL
Sbjct: 297 AVLVTVFDEPFRALLCCIVVLVVQQLDGNVIYPNVIGKSLAIHPLTIILVLLVAGNLAGL 356

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           LG+F+G    A+   I    +  IK++K K +  
Sbjct: 357 LGIFLGVPFYAICRTIVVFIVRLIKDDKIKKNQE 390


>gi|298241839|ref|ZP_06965646.1| protein of unknown function UPF0118 [Ktedonobacter racemifer DSM
           44963]
 gi|297554893|gb|EFH88757.1| protein of unknown function UPF0118 [Ktedonobacter racemifer DSM
           44963]
          Length = 385

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 107/298 (35%), Gaps = 13/298 (4%)

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++A + +  L +  L FL Y  +    + V  +  + Q  +         P G       
Sbjct: 71  LLAILIMYVLVLSVLSFLIYLVVTTTIDQVRALASSVQTLLT--------PKGAGQLSPI 122

Query: 124 TKHLSHPQSLKILSETFLKTNGIDF--IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            + L           +F            R A       ++  L ++ + +   +   DG
Sbjct: 123 EQTLGSIGISHTQISSFGSQITSRLEGAARDAVPLVSGVVNAILDLVLIAVLSVYLLNDG 182

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             IS  +     H+  A    +   + +++     G  I++   G+++G   ++  VP  
Sbjct: 183 TRISTWVRKNSPHV--ARASTVLDTLQRIVGGYIRGQLIMSTLIGVLVGGGMFIFHVPYA 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           V LGV+  ++  IP    +   A+ + L +      A  + ++  I   +    + P +V
Sbjct: 241 VFLGVMAFVLEFIPVLGTLVSGAICVLLALTQGWLIALGVLIYFIIVHILEGDVIGPRIV 300

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLG-LFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           G  + L  + +   L+ G    G+ G LF  PV+  L  ++    I       E+   
Sbjct: 301 GQAVGLHPVISIAALIAGAELFGIWGALFAAPVVGVLQVLVVALWINWRHTRPEQFEQ 358


>gi|255262669|ref|ZP_05342011.1| membrane protein [Thalassiobium sp. R2A62]
 gi|255105004|gb|EET47678.1| membrane protein [Thalassiobium sp. R2A62]
          Length = 353

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 60/341 (17%), Positives = 129/341 (37%), Gaps = 16/341 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             ++ V +++L     P +    I +   PI     +    +      + T+    +FIV
Sbjct: 16  AAVLFVLMWYLGNVILPFVLGGAIAYCLDPIADRLEA-LGLNRIMATSVITLFGALVFIV 74

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM-WASELWTKHLSHPQSLKI 135
             + +    + +   L+             P W +D    +           S  +    
Sbjct: 75  LFIAVIPTLIQQASGLIQ----------AAPGWFTDFQAFLTQRFPSLIDENSAVRDQLG 124

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                ++++G + I    S F    L+  + I+ + +  F+   D  +++ ++D L    
Sbjct: 125 RVSEAIQSHGGELIEGLLSSF-SGLLNIAVLIVIVPVVAFYLLLDWDNMTARVDDLLPRD 183

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                +KI R + K + S   G   + +  G+    +  + G+   + +G I  +++ IP
Sbjct: 184 HAPTIRKICRDIDKTLASFIRGQGTVVLILGVYYAISLMIVGLNFGLVVGSIAGLISFIP 243

Query: 256 GGAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
               +   A++I + I    G+ F+   + +  A+  F+    L P LVG  + L  +  
Sbjct: 244 YVGALVGGALAIGIAIFQFWGDWFSLGAVVVIFAVGQFLEGNILTPKLVGNSVGLHPVWL 303

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            F L       G +G+ +   L A + VI +  I   K ++
Sbjct: 304 IFALSVFGALFGFVGMLVAVPLAASLGVIARFLIAQYKTSR 344


>gi|229174027|ref|ZP_04301563.1| hypothetical protein bcere0006_31210 [Bacillus cereus MM3]
 gi|228609359|gb|EEK66645.1| hypothetical protein bcere0006_31210 [Bacillus cereus MM3]
          Length = 376

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/337 (16%), Positives = 125/337 (37%), Gaps = 5/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + FLK  F PVL A ++ +   P + S + KK  S         + V+ LF+
Sbjct: 44  ISFVFTPFIVFLKTIFFPVLLAGVLFYILHP-FVSLLEKKGVSRIVSIASIYIIVLGLFV 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             ++ +      ++  L+  +           R      G         ++L+   +  +
Sbjct: 103 FLVVTVIPIIKDQIDALIDNLPYFGHEVERAARRF----GESNLLGKIQENLNIDVASMV 158

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   T  +  +    + F     +  L+ + +   LF+  +DG  +           
Sbjct: 159 KDYTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQ 218

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +I   +   I S   G  I+++  G++L   Y + G+   V L ++  I+ ++P
Sbjct: 219 RQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVP 278

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI     ++ +    +      + +   +      K + P ++G  + +  +   F 
Sbjct: 279 YVGPIIAITPALIIAFIDSPSMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFI 338

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           ++      G++G+ +     A++ V+   S   +K N
Sbjct: 339 ILTAGNLFGIMGIILAIPGYAILKVLVTHSYRFVKLN 375


>gi|329295579|ref|ZP_08252915.1| hypothetical protein Pstas_00795 [Plautia stali symbiont]
          Length = 123

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A +++IP  G+ I +   +I+    G ++    L  +  I + +VD  LRP LVG   K
Sbjct: 1   MAFLSLIPAVGSAIVWVPAAIFFFATGALWKGLFLVGFFVIVVGLVDNILRPLLVGKDTK 60

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           +P        +GG+   G+ G  IGP++ AL    W   +++ ++N+E +
Sbjct: 61  MPDYLILIATLGGMEVYGINGFVIGPLIAALFIACWN--LLSGRDNRENV 108


>gi|304404775|ref|ZP_07386436.1| protein of unknown function UPF0118 [Paenibacillus curdlanolyticus
           YK9]
 gi|304346582|gb|EFM12415.1| protein of unknown function UPF0118 [Paenibacillus curdlanolyticus
           YK9]
          Length = 385

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/335 (14%), Positives = 117/335 (34%), Gaps = 7/335 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI    +   K    P+L   ++ +   PI    + +      +  ++  V ++ +  
Sbjct: 40  ISFIFTPFIVLAKTVLLPLLLTGVVYYLLNPIVDGLV-RLRLKRGYAILLLYVIIIAVIA 98

Query: 76  VPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           + +L +      ++  L++     ++Q  +    W+               H+     + 
Sbjct: 99  LVILAVIPLIRQQITSLITNFPSYSDQMEVQFREWIGSDFFNQLEQATGLNHMDLTDQVT 158

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
               + L              +     +  L+I+ +   LF+  +DG  +S+ +      
Sbjct: 159 SRISSVLTNTWHHL-----GGWLGAVTEIVLAIVTVPFVLFYLLKDGHKLSEVILGFIPT 213

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 +++       I S   G  II++  G +L   Y + G+   + L +  A  +++
Sbjct: 214 ALRPETRRVLHESNHQISSYIRGQIIISLCIGALLYIGYLIIGLEYSLVLAIAAACTSVV 273

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P   P+     ++ +    +      +     I   I  K + P ++G  +++  +   F
Sbjct: 274 PYLGPVIAITPALIVATVTSPTMLLKMIAVWTIVQLIEGKFISPQIMGKTLRIHPVTIIF 333

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            ++      G+LG+ +     A++ VI        
Sbjct: 334 VILTAGNLFGILGIILAVPGYAVLKVISTHVFRWF 368


>gi|222110889|ref|YP_002553153.1| phytochrome sensor protein [Acidovorax ebreus TPSY]
 gi|221730333|gb|ACM33153.1| putative phytochrome sensor protein [Acidovorax ebreus TPSY]
          Length = 830

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 122/358 (34%), Gaps = 26/358 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +  T+ + + ++  +I  +++  LYF +    P+  A ++ F   P+ +    K+     
Sbjct: 47  LDATVPSLRFMIGLVIAALVVAGLYFGRTLLVPLALAFLLSFVLEPLVAQL--KRMGLPR 104

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             +VIA V  M + +            E+   +       +  +   R     PG    +
Sbjct: 105 LPSVIAVVMAMLMVLGVGALFVGNEARELSAQLPSYQSTIRKKLRSLRQELRAPGMFDGA 164

Query: 121 EL---------------WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           +                 +     P   K+  +  + +     +   ++  G +      
Sbjct: 165 KRTFDIVQREVEAAAPALSGATRAPAVQKVQVQPPVLSPANQLMAALSAVSGPLT----- 219

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
               +++ + F   D   +  +L  L           +     ++ R   +   ++ +  
Sbjct: 220 QAGLVLVFVIFILLDRVDLRDRLLRLWGGNLHRATDAMDEAGDRITRYLTMQ-LLVNVTY 278

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           G+ + +  WL GVP  V  G + A+M  +P   P    A  + L    +      L+  G
Sbjct: 279 GIPMAAGLWLIGVPGAVLWGSLAAVMRFVPYLGPFIAAAFPLTLAFAVDPGWDLVLWTLG 338

Query: 286 AIELF--IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAV 340
            I L   + +  + P+L G    L  L             G +GL +  P+ + L+ +
Sbjct: 339 LIVLLELVSNNVIEPWLYGSSTGLSALSLIVAATFWAALWGPVGLIMSTPLTVCLLVI 396


>gi|39997096|ref|NP_953047.1| transporter [Geobacter sulfurreducens PCA]
 gi|39983986|gb|AAR35374.1| transporter, putative [Geobacter sulfurreducens PCA]
 gi|298506109|gb|ADI84832.1| membrane protein UPF0118 [Geobacter sulfurreducens KN400]
          Length = 370

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 112/325 (34%), Gaps = 4/325 (1%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F PVL ALI+ +   P+ +   +++      + ++  + V+        F         +
Sbjct: 43  FLPVLLALILAYVLNPLVTWLEARRVPRVAAVLLVMALIVVVTAGAVTFFAVSIQKEVAR 102

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
             ++    A +    +P             +L+ +  S    L+  S   +K        
Sbjct: 103 VEINLPAYATRLYDLIPGQAKAYLEIETPDKLYARIDSLVDELRGASFDLVKGALGVVQR 162

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
            F+S  G  FL          + L++F  D   +   + +L           +   +  V
Sbjct: 163 AFSSTLG--FLLTVAGYFITPVYLYYFLADLPRLRDGIMALVPGRARDRAAMLGSEIDGV 220

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI--SFTAVSIY 268
           +     G   +     ++      + G+   + +G ++  + +IP    +     ++ + 
Sbjct: 221 LSGFVRGQLAVCAILAVLYSIGLVMIGIDLAIVIGSLSGFLFIIPYVGTVFGIVVSMIMA 280

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
            L   ++ +      W AI   I    + P +VG  + L  +     L  G +  G+ G+
Sbjct: 281 FLKFHDMLHPLLCLGWFAIVQAIEGALITPAVVGNTVGLHPVVAILALFIGGQWFGIFGM 340

Query: 329 FIGPVLMALIAVIWKESIMAIKENK 353
            +   + A+I V+ +  +   +   
Sbjct: 341 LLAVPVAAVIKVLLRHGVEWYRATP 365


>gi|319651659|ref|ZP_08005786.1| hypothetical protein HMPREF1013_02398 [Bacillus sp. 2_A_57_CT2]
 gi|317396726|gb|EFV77437.1| hypothetical protein HMPREF1013_02398 [Bacillus sp. 2_A_57_CT2]
          Length = 362

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/330 (15%), Positives = 106/330 (32%), Gaps = 11/330 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L   F P +    I +   PI                 I          + L       
Sbjct: 37  ILFAVFIPFVIGAFITYLLHPIVEKLHE-TGLHRGLAVFIIYFLFFGGISLALYKGIPAF 95

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++++L              P++ +   G +   +  T         +I          
Sbjct: 96  IHQLRDLAENA----------PQFANQYRGWINLIQSKTSTWPDGLQTRIDDFIVAVEKR 145

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           ++ +      F +  L+Y + I  +    F+  +D   + +    L    +        R
Sbjct: 146 LNNLLSKVITFFLNVLNYAVIIAVIPFISFYLLKDFSIMKKAAWYLTPRKWRKEGVLFLR 205

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            V K + S   G  ++    G +    +W+  +   + LG I  +  +IP   PI     
Sbjct: 206 DVDKSLGSYIRGQLLVCAAIGAISSLLFWIFDMRYPLLLGTIIGVTNVIPYFGPIIGAVP 265

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ +    ++           +  F+    L P +VG  + +  L     L+ G    G+
Sbjct: 266 AVIIASALSVKMIVITIGIIIVLQFLEGNILSPLIVGKSLHMHPLLIMLALLAGGEAAGI 325

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           LGL I   ++A+I V    +     +NK+ 
Sbjct: 326 LGLIIAVPILAVIKVSIIHAKKHFSKNKQP 355


>gi|292670129|ref|ZP_06603555.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292648228|gb|EFF66200.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 340

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/344 (15%), Positives = 128/344 (37%), Gaps = 17/344 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I+  +   I+L S +  +     +  +L++     P    F+ ++ +  +  AV+A   
Sbjct: 9   SIILAIACAILLSSFWLFQDLAFIIFLSLLLHLLLKPAVD-FMERRNKPRSIAAVLAIFL 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + + +  +  L    +  ++  V+++   +         +  +P    +  +  + L+ 
Sbjct: 68  FVLVVVGIITLLSRSVVPSLQRFVTELPNIS-------ASIQQLPLLSDSVFVQNELLNL 120

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              L+ L    L+          +  F        +  + +I   F+  +DG  I   L 
Sbjct: 121 LDRLRSLGSEALRA---------SLSFLFGAFGKVIDFVIIIFVSFYLLKDGEEIKVWLT 171

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L      A   ++   +   +R+      ++    G+++ + + L G+P      +++A
Sbjct: 172 DLFPDSARARIIRLFDNLLSALRTYICSQLVMCATTGVLVFAFFQLMGLPYASVFALLSA 231

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I   IP   P   +A+ I +        A   F++  I        + P L+G  + L  
Sbjct: 232 ISEFIPVLGPTIASALGIIMTASTVPELAIQTFIFYVILTQANHNIIYPALIGKSLHLHP 291

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +    G+V G   +G  G+F+    + ++ ++  +     KE  
Sbjct: 292 VAVILGVVFGGEILGPAGMFLAVPFIVILKIVISDIYRDRKEQH 335


>gi|225575173|ref|ZP_03783783.1| hypothetical protein RUMHYD_03262 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037640|gb|EEG47886.1| hypothetical protein RUMHYD_03262 [Blautia hydrogenotrophica DSM
           10507]
          Length = 388

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 61/346 (17%), Positives = 122/346 (35%), Gaps = 6/346 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSF-ISKKEESSTFLAVIATVSVMCLF 74
           ++ I+ +    L  F      A I+      +     + K      F   ++ +  +CL 
Sbjct: 31  VLGIVGLLWQILFPFVLGAAMAFILNVPMHFLEEKLFVRKDGSKRRFARPVSLIGALCLV 90

Query: 75  IVPLLFLFYYGMLEMK-ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           +  +L +    + E+   LV+           V RW +++         W   L      
Sbjct: 91  VCIILLVVLVVVPELGKTLVALGKTIESTVPQVQRWAAELFQDNEQISEWIAQLDLDWHK 150

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDY----CLSIIFMIIALFFFYRDGFSISQQLD 189
            + S   +  NG   +        M  +      C+  +F    L    + G  +   L 
Sbjct: 151 ALASALDVLRNGASSVLSSTWTVTMGIVKAMTNGCIGFVFACYILLQKEKLGRQVKMALR 210

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           ++       Y   +  +  +   +   G  I A+  G +      +   P  + +GV+  
Sbjct: 211 AILPEKSETYTFHVLSLSYRTFANFVTGQCIEAVILGTMFFVLLTILKFPYALLIGVLIG 270

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
             A+IP        AVS+ LL+  +   A    +   I   I    + P +VGG + LP 
Sbjct: 271 FTALIPIFGAFIGCAVSVLLLLMVSPAKALIFIVIFLILQQIEGNLIYPHVVGGSVGLPS 330

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +     +  G   MG+ G+ I   L +++  +++E +    E ++K
Sbjct: 331 IWVLVAVTVGGNLMGVAGMLIFIPLTSVVYSLFREWVHYRLEIRKK 376


>gi|86357127|ref|YP_469019.1| putative permease protein [Rhizobium etli CFN 42]
 gi|86281229|gb|ABC90292.1| putative permease protein [Rhizobium etli CFN 42]
          Length = 374

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/326 (13%), Positives = 102/326 (31%), Gaps = 11/326 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  Q      ++   +  LY       P ++ + I +   P+      +   S     V 
Sbjct: 10  LKRQIFFWLAVLVFFIAFLYVFSSILLPFIAGMAIAYFLDPVADRLE-RLGLSRMMATVG 68

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             ++ + +F + L+ L    + +  +   ++                     W       
Sbjct: 69  ILIAFVIVFALALMILIPVLISQFNDFAERLPSYISQLQKFIAQSQHSLLPQWIRSQVGT 128

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
              +   +      FL       +       G   +D    ++   +  F+   D   + 
Sbjct: 129 IKDNFSGILSEGMGFLTG-----LFAQIWNSGKAIVDVISLLVVTPVVAFYILLDWDRMV 183

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            ++D      +    ++I+  + + I     G   + +  G+   +   L G+   + +G
Sbjct: 184 AKVDQWIPRDYVNDVRQIASEIDQAIAGFIRGQGSLCLILGIYYAAGLSLVGLNFGLLIG 243

Query: 246 VITAIMAMIPGGAPIS----FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +   +++ IP    +        V+I        +    L ++ +   F+    L+P LV
Sbjct: 244 LFAGMISFIPYVGSLVGLVLAVGVAIVQFWPDYPWIGLVLVVFFSG-QFLEGNILQPKLV 302

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLG 327
           G  + L  +   F L       G +G
Sbjct: 303 GSSVGLHPVWLMFALFAFGALFGFVG 328


>gi|317010786|gb|ADU84533.1| hypothetical protein HPSA_02620 [Helicobacter pylori SouthAfrica7]
          Length = 360

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 63/372 (16%), Positives = 138/372 (37%), Gaps = 32/372 (8%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK---------E 56
           +  Q     + +      LY  + F    L A ++    + +      +           
Sbjct: 1   MKAQYFFWILFLIGFYWMLYLYQDFLMDALIAGLLCVGLFQVKVFLDKRFSHVKYFYIDR 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
            S+ F +++  + +  + IVPL F+ Y G     E+        +    + +WL      
Sbjct: 61  FSNVFSSLLCVLVLASVLIVPLYFIVYKGSNVFFEI------NFEKLSALIKWLKG---- 110

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
              +E  +   +    +      F   +   ++ + +S  G          +F++  LFF
Sbjct: 111 -TITENLSHFPTIHDEVSKFLANFSAASITGYLLKISSYVGKYGFKLITDALFILGLLFF 169

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
           F+  G         +   L     KK+   V  ++R   L   I  I EG+  G      
Sbjct: 170 FFYYGERFYCYFLGVLP-LENNQSKKVFEEVAGILRIVLLTSLITVILEGVAFGVMIVWF 228

Query: 237 GVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDK 294
           G      LG++  + +++P  G  + +  ++IY L  G++  A  + L+  + +  ++D 
Sbjct: 229 GHDGWS-LGILYGLASLVPAVGGALIWIPIAIYELYHGSVNGAIFIALYSILLISVLIDS 287

Query: 295 TLRPFLV--------GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            L+P+L+           +K+  +  FF ++ G+   G  G+ +GP + A    + +   
Sbjct: 288 VLKPYLIVFIKKRIFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYE 347

Query: 347 MAIKENKEKISS 358
               + +++   
Sbjct: 348 NYFIQKEQETCE 359


>gi|330811201|ref|YP_004355663.1| hypothetical protein PSEBR_a4251 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379309|gb|AEA70659.1| Conserved hypothetical protein; putative membrane protein
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 357

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/331 (15%), Positives = 118/331 (35%), Gaps = 14/331 (4%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
                P L AL++ +   P+      K   S T+  V        +    LL L      
Sbjct: 24  HPILTPFLVALLLAYLFDPVVDRLE-KLGLSRTWGVVAVFALFTLIVGALLLVLIPMLAK 82

Query: 88  EMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLKILSETFLKT-N 144
           ++  L             +  WL    +P       L        +    +SE   +T +
Sbjct: 83  QLLRLYELA-------PQMLDWLQHSAVPWVQSKLGLADGFWKFDKVKAAISEHMGQTTD 135

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            +  +   A+  G+  + +  +++ + +  F+  RD   +  ++ SL           ++
Sbjct: 136 IVGVVLSQATASGLALIGWLANLVLIPVVAFYLLRDWDLMMAKIRSLLPRHREERIMTLT 195

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
               +V+ +   G  ++ +  G +  +   L G+   + +G+I  + A++P    +    
Sbjct: 196 GECHEVLGAFVRGQLLVMVALGFIYAAGLMLVGLELGLLIGLIAGLAAIVPYMGFVIGIG 255

Query: 265 VSIY---LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
            ++        G+++    +     +   +    L P LVG  I L  +   F ++ G  
Sbjct: 256 AALIAGLFQFGGDLYPMVGIVAVFMVGQALEGMVLTPLLVGDRIGLHPVAVIFAILAGGE 315

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             G  G+ +   + A+I V+ +      K++
Sbjct: 316 LFGFTGILLALPVAAVIMVLVRHMHDLYKDS 346


>gi|310829307|ref|YP_003961664.1| hypothetical protein ELI_3745 [Eubacterium limosum KIST612]
 gi|308741041|gb|ADO38701.1| hypothetical protein ELI_3745 [Eubacterium limosum KIST612]
          Length = 395

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/322 (14%), Positives = 101/322 (31%), Gaps = 16/322 (4%)

Query: 49  SSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR 108
                 +   S   A +  + +M L +  +L       L        V+ + Q       
Sbjct: 75  KRVQRLRRPLSILAAFLILIGIMALVVFLVLPELVNAALLFARSFPSVLESFQS------ 128

Query: 109 WLSDIPGGMWASELWTKHLSHPQ-------SLKILSETFLKTNGIDFIPR---FASRFGM 158
           W S I G    +  + + L            L     +F +     F+      A+    
Sbjct: 129 WASRILGEHSEASAFIQKLDTGGLESLNWDMLSKNLFSFFRGGAAGFLSTTLNVAASVAG 188

Query: 159 IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
                 + ++  +  LF   R G    + L +           +I  +  +       G 
Sbjct: 189 GVFHTVIGLVVAVYLLFQKERLGLQTRKLLYAYLPEKRVDRLLEIVGLTQETFSHFVSGQ 248

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA 278
            I A+   ++      +  +P  + + V+  + ++IP    I    +  +L++  +   A
Sbjct: 249 CIEALILTVIYTIILSILQMPYALTIAVLIGLFSLIPVFGAIVACCLGAFLILTLSPVKA 308

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
               +   I   +    + P +VG  I L  L     +  G    G+LG+ +   L +++
Sbjct: 309 LIFVVACFIVQHVEGNLIYPHVVGSSIGLSPLWILAAVTIGGGAFGILGIIVMIPLFSVL 368

Query: 339 AVIWKESIMAIKENKEKISSNF 360
             +  E++      +       
Sbjct: 369 YTLTGETVNRRLSQRHVDPQKL 390


>gi|331006457|ref|ZP_08329760.1| Putative permease PerM [gamma proteobacterium IMCC1989]
 gi|330419757|gb|EGG94120.1| Putative permease PerM [gamma proteobacterium IMCC1989]
          Length = 365

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 59/334 (17%), Positives = 117/334 (35%), Gaps = 12/334 (3%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
            V ++ L     PVL+A+II F    +  S  +K     + +AV  T  +  + +  L+F
Sbjct: 29  FVVIWSLGDVLGPVLAAIIIAFLMQGMMVSLKNKGLPHWSAVAVAITFLISVMVLA-LVF 87

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           +      +   L  ++      G  +   L +            + + H  +        
Sbjct: 88  IIPALWEQALSLSKELPRMVTQGRDLLLHLPESYPTFITEGQVEQLILHASTRLASFGQV 147

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           + +  +  +P        + L   L ++ + + +FFF +D  S+   + SL     P   
Sbjct: 148 VVSFSVANLP--------VLLTGLLYMVLVPLLVFFFLKDSQSMLTWVGSLLPKERPV-M 198

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAP 259
            KI   + + I +   G  I  +  G+V   ++ + G+   V L +   +  +IP  GA 
Sbjct: 199 NKIFAEMNQQIANYVRGKVIEILVVGIVSYISFTILGLNYAVLLALAVGLSVVIPYVGAV 258

Query: 260 ISFTAVSIYLLIKGNIFNATC-LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           +    V +    +         L +   +   +    L P L    +KL  +     ++ 
Sbjct: 259 LVTIPVLLIGFFQWGWGYELLYLTIVYFVIQGLDGNVLVPLLFSEAVKLHPVAIILAVLI 318

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
                G  G+F    L  L+  I         E 
Sbjct: 319 FGGLWGFWGVFFAIPLATLVKAIINAWPSPQSER 352


>gi|56421067|ref|YP_148385.1| hypothetical protein GK2532 [Geobacillus kaustophilus HTA426]
 gi|56380909|dbj|BAD76817.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 341

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 114/332 (34%), Gaps = 4/332 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           + RW+I+ ++     +L  +  P+L AL       P         +        +     
Sbjct: 1   MKRWIIIALLFAVGLWLVPYSVPLLFALATALLLEPSIRRLQENYKLKRAHAVTVIFSLF 60

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +  + L FL    + ++  L  K+         V   L       ++S +  + +   
Sbjct: 61  IIILGLSLYFLVVIFVQQVMALSQKLPYVLNEATKVLDRLIQT-WQSYSSSIPQEIIDSL 119

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           +      E  L +   +           I   + +  +  +IALF    D   + Q +  
Sbjct: 120 ERGVNTVEQMLLSFATNLTQSLVHYIAAI-PAFLIHFLVYLIALFLICLDLPQLKQGMRR 178

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                       +   + K          ++++    +  +  ++ GV     + ++  +
Sbjct: 179 YLSERTEQRLGMVVAQLSKAGIGFLKAQFLLSLITFFLALAGLFVLGVDYAALMALVIVV 238

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           + ++P  G         +  +  GN      L +   + + +V + + P +    + +  
Sbjct: 239 VDILPILGTGSVLVPWGLISMANGNNTLGIGLIVL-FVVITVVRRIIEPKVFSTNLGISP 297

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           L     +  G + +G +GLF+GPV++ L+  +
Sbjct: 298 LAALVSVYLGFQLLGFIGLFVGPVVVILVEAL 329


>gi|14591352|ref|NP_143430.1| hypothetical protein PH1571 [Pyrococcus horikoshii OT3]
 gi|8928494|sp|O59276|Y1571_PYRHO RecName: Full=UPF0118 membrane protein PH1571
 gi|3258000|dbj|BAA30683.1| 341aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 341

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/333 (14%), Positives = 122/333 (36%), Gaps = 28/333 (8%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           LK   AP++  +   + ++P +     K  + ++ L +   +S+  L     + +  +  
Sbjct: 26  LKDLIAPIVFGMAASYIAYPFHIKLSKKVGKRNSVLILSGILSIFSLIF--FVGVTLWIT 83

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
             +K L + +            WLS +    + S L+                 L T+  
Sbjct: 84  DTLKNLYNYLDAFF-------SWLSTLNVPGFLSSLFDA---------------LATSFP 121

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
           + +     ++ +      L +I  +   +    +   +++++  L         +K+   
Sbjct: 122 EKLRSILLQYTLSLPKLALQLIVFLAVFYATLLNADFLAKEIYELLPLTNRELGEKMIEK 181

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLA---GVPSHVALGVITAIMAMIPGGAPISFT 263
           V   + +        ++ +G+ L   ++L     V   +A GV+  ++ ++P        
Sbjct: 182 VKDTVDAILKTWLFFSVVKGIFLALGFYLFKISNVAGSIAAGVLCIVLELLPVVGGWIMW 241

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
                +L++ ++  A    ++G I +  I D  L+P       K+  +    G+ GG   
Sbjct: 242 LAGAIILLRRSMLLAIIFAIYGIITISPIPDYFLKPKFAKERAKVSSVVALVGIFGGWIA 301

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            G +G+ +GP+ + L+  +         +   K
Sbjct: 302 FGAVGIILGPIAIGLLLALIDAWREIGTKQPSK 334


>gi|261838190|gb|ACX97956.1| outer membrane protein [Helicobacter pylori 51]
 gi|317179069|dbj|BAJ56857.1| membrane protein [Helicobacter pylori F30]
          Length = 348

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 135/363 (37%), Gaps = 25/363 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  Q     + +      +Y  + F    L A ++    + +      +        + +
Sbjct: 1   MKAQYFFWILFLIGFYWMIYLYQDFLMDALIAGLLCVGFFQVKVFLDKRFLN--LISSFL 58

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +  + IVPL F+ Y     + E+        +    + +WL         +E  + 
Sbjct: 59  CVLVLASVLIVPLYFIVYKSSNIIFEI------NFEKFSALIKWLKG-----TITENLSH 107

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +         E F   +   ++ + +S  G   L      +F++  LFFF+  G    
Sbjct: 108 FPTIHDGASKFLENFSAASITGYLLKISSYVGKYSLKLITDALFILGLLFFFFYYGERFY 167

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +   L     KKI   V  ++R   L   I  I EG+  G      G      LG
Sbjct: 168 RYFLGVLP-LGMNQSKKIFEEVAGILRIVLLTSLITVILEGVAFGLMIVWFGHDGWS-LG 225

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLV-- 301
           ++  + +++P  G  + +  ++IY L  GN+  A  + L+  + +  ++D  ++P L+  
Sbjct: 226 ILYGLASLVPAVGGALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVF 285

Query: 302 ------GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                    +K+  +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 286 IKKRIFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345

Query: 356 ISS 358
              
Sbjct: 346 ACE 348


>gi|227534424|ref|ZP_03964473.1| permease [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227187931|gb|EEI67998.1| permease [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 405

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/345 (13%), Positives = 118/345 (34%), Gaps = 19/345 (5%)

Query: 17  MFIILVSLYFLKGFF-------APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           +F+     +  +           P + A I+ + + PI +    K      +        
Sbjct: 48  IFVFTKIAWVFQPVLDFLGIIAPPFIFAGILFYLTVPIINRLE-KFGLHRGWA------- 99

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +  LFIV +  L +  +  +  + +++         +   +      +   +        
Sbjct: 100 IGLLFIVLIGLLAWGLLRFIPAVSNQITSIVHSAPQIFDEIGKWLDNLNDQQNILSQHDL 159

Query: 130 PQSLKILSETFLKTNGIDFIPRFAS--RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            +    +   F    G       +       I  +  ++I    I LFF  +DG   +  
Sbjct: 160 NEIAAEVQSFFTGKQGAFVTGTISQLQNLIGIVGNVVITISTAPIILFFMLKDGDKFTPM 219

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  +         K++   + + + S   G   +A+   ++    Y + G+   +  G++
Sbjct: 220 VLHIVPTKLRRSVKQMLHEMNEKVGSYVQGQITVALCVAVMFMVGYSVIGLRYGLIFGLL 279

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
              + +IP  G+ ++     I   +  +      + +   IE  I  + + P ++G  ++
Sbjct: 280 ACPLNLIPYFGSALAMIPPLIMGALT-SPRMILAVIIVFFIEWLIETQVISPLVMGSKLE 338

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L  +     L+      GL+G+ +G    A++ ++        ++
Sbjct: 339 LHPITIVVVLLTAGNLFGLVGVILGIPGFAVLKIVVTRFFSWYQQ 383


>gi|327400680|ref|YP_004341519.1| hypothetical protein Arcve_0788 [Archaeoglobus veneficus SNP6]
 gi|327316188|gb|AEA46804.1| protein of unknown function UPF0118 [Archaeoglobus veneficus SNP6]
          Length = 329

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 116/318 (36%), Gaps = 17/318 (5%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
                ++  ++  + + PI      K        ++IAT+ ++    + + +  + G+ +
Sbjct: 26  PLLDGIVMGIVFAYVAKPIKKRVEEKTG--KAAASLIATLLIIVPIFILMFYGIFQGINQ 83

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           +  L +      Q        +S +       +          S+  L++  LK + ID 
Sbjct: 84  LVYLFTHQHEVEQM------LVSTLRDAGIDEKYIEDVRLWIPSVISLAQGKLKISAIDV 137

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
             R         + + ++ I   I  F+   D  S  ++   +          +    V 
Sbjct: 138 TIR--------AVMFFMNFIISAIVCFYVLLDADSFVRKTIRIFPESRQKEIARFIAEVD 189

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSI 267
           + + + + G    A+  GLV    +    +P    L  +  + A+IP  A  +    V++
Sbjct: 190 ETLLALWFGNFAFAVIIGLVSIPFFMAFRIPYAPLLSGLMFLAALIPVFAEWMVLAPVAL 249

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +L +           +      F+ +  LRP+ VG   ++  L      +GG    G+ G
Sbjct: 250 FLALTNLNMAIWFTAIGFLFLYFLPEVVLRPYFVGHASRIHPLALLLAFIGGAMVGGVAG 309

Query: 328 LFIGPVLMALIAVIWKES 345
            F+ P+++A+I  ++   
Sbjct: 310 FFVAPMVVAVITAVYNYY 327


>gi|157273433|gb|ABV27332.1| domain of unknown function protein [Candidatus Chloracidobacterium
           thermophilum]
          Length = 432

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/352 (13%), Positives = 126/352 (35%), Gaps = 13/352 (3%)

Query: 11  IMRWMIMFIILVSL-YFLKGFFAPVLSALIIGFTSWPIYSSFI-------SKKEESSTFL 62
           +  W ++  +LV L Y  +  F P+L +  + +   P+                   T  
Sbjct: 44  LAAWGLLSGLLVHLSYIFQPVFVPLLISGALAYLIKPLADWLEHFGKQWVRPAGLRHTLS 103

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++A    +    + L  +      ++     ++    Q G+ V + + +        + 
Sbjct: 104 VLMAMAVAVLGLALGLFVVIPSLATQLTLAAKRLPAGYQRGMAVAQPILE-GLQQRYPKQ 162

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           + + ++            ++         F++  G+      ++++ +   +++  +D  
Sbjct: 163 YEQVVAAIHDRIADPSALIEPILAGLSATFSNAIGVAT--SLINLLLIPFFVYYILKDAG 220

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + ++L  L      A    +   V   + S   G  I+     L+    + L G+PS +
Sbjct: 221 RLERRLLLLVPMRHRAIVDDMVSKVDLALSSFVRGQLIVCFLMSLLYTLGFSLLGIPSAL 280

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFL 300
           +LG ++    ++P         ++  + +    ++     +     +   I    L PF+
Sbjct: 281 SLGFLSGFGHLVPYIGTFLAGLLTCTIALSDAPSLVQLGLVIGVYVVVQSIESFYLTPFV 340

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           +G  + L       GL+ G    G+LG+ +    +A+  V+   S+   + +
Sbjct: 341 LGERLDLHPFLVIVGLLIGHHLFGILGVVLTVPCLAVGKVLVGISLEYYERS 392


>gi|315453202|ref|YP_004073472.1| outer membrane protein [Helicobacter felis ATCC 49179]
 gi|315132254|emb|CBY82882.1| Outer membrane protein [Helicobacter felis ATCC 49179]
          Length = 353

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 60/360 (16%), Positives = 141/360 (39%), Gaps = 29/360 (8%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           + P      +        LY  + F   +L A ++  T + +             F +++
Sbjct: 1   MRPVYFFWLLFCVAFYWMLYLYEDFLMDLLIAGLLCVTIFWLKEFLDKYM--RDLFSSLL 58

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMK--ELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
             V ++   ++PL F+ +  +  +    L       N+    V  +L   P     ++ +
Sbjct: 59  CVVVLLSFLVIPLYFIIHQSVDFLSHINLEKLSFFFNKFKADVLIFLDRFPAINTDAKNF 118

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
             HLS               + + ++ RF+S  G   L      + +++ LF  +  G  
Sbjct: 119 ISHLSA-------------QSIMSYVLRFSSDIGKYSLKLASDTVMVLVFLFLCFFYGRH 165

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
               +  +         K I R V  ++R   L   I  + +G+  G+      +   ++
Sbjct: 166 FYSYILEILP-FEKIQSKGIFREVAGILRVVLLTSIINVVLQGVAFGALVVWFDLDW-LS 223

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLV 301
           LG++  + ++IP  G  + +  V++Y + + +   A  + ++  + +  ++D  ++P+L+
Sbjct: 224 LGILYGLASLIPIVGGSLVWIPVALYEMYRDHTTIAIVIAIYSIVLIGGLIDSLIKPWLI 283

Query: 302 GG--------PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G          +K+  +  FF ++ G+   G  G+ +GP + A   V+ +    +  + K
Sbjct: 284 GFIKHRILKISLKINEILIFFSILAGISKFGFWGIAVGPTITAFFIVLLRLYEHSFIKPK 343


>gi|282163180|ref|YP_003355565.1| hypothetical protein MCP_0510 [Methanocella paludicola SANAE]
 gi|282155494|dbj|BAI60582.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 350

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 103/288 (35%), Gaps = 11/288 (3%)

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
                 ++PL+ +  YG++ +      V   +     +   +  I G     ++     +
Sbjct: 70  IATFCILLPLIAIIAYGVVSVLGEAEWVFQHSGELGDMI--IGTIEGLGLPFDVNAGLDT 127

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             + L   + TFLK+  I        R     +   ++ +  +   F+  +DG S +  +
Sbjct: 128 GLKGLYDYTITFLKSLPI-------GRTFSGIISLAMNALVSLFVCFYLLKDGGSFTAIV 180

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +                 +++   F G    A+   +     + + G+P    L    
Sbjct: 181 REVVPARHKPALDMFLTEADRILSGIFTGTFYTALYIAVGALVLFVIFGIPYKALLTAFV 240

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFI-VDKTLRPFLVGGPIK 306
            I AM+P  +  + F  V+IYL +  +            + +++  D  +RP+++     
Sbjct: 241 FIAAMVPILSGMMVFIPVAIYLYMFRSPIIGLLFLGLAVVFIYLPPDYVIRPYIINRASN 300

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L  L      +GG    GL G F  P+ + L   +++        +++
Sbjct: 301 LHPLLIILAFIGGGVAGGLSGFFAAPMAIGLATALYRTYKKTKGNDED 348


>gi|217960763|ref|YP_002339327.1| membrane protein YubA [Bacillus cereus AH187]
 gi|301054849|ref|YP_003793060.1| hypothetical protein BACI_c33060 [Bacillus anthracis CI]
 gi|217067714|gb|ACJ81964.1| membrane protein YubA [Bacillus cereus AH187]
 gi|300377018|gb|ADK05922.1| putative membrane protein [Bacillus cereus biovar anthracis str.
           CI]
          Length = 373

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 121/326 (37%), Gaps = 5/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + FLK  F PVL A ++ +   P + S + KK  S         + V+ LF+
Sbjct: 41  ISFVFTPFIVFLKTIFFPVLLAGVLFYILHP-FVSLLEKKGVSRIVSIASIYLIVIGLFV 99

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +L +      ++  L+  +           R      G         ++L+   +  +
Sbjct: 100 FLVLTVIPIIKDQIDALIDNLPYFGHEIERAARRF----GESNLLGKIQENLNIDVASMV 155

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   T  +  +    + F     +  L+ + +   LF+  +DG  +           
Sbjct: 156 KDYTVDFTKSLSSVTGNVTGFLSTITEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQ 215

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +I   +   I S   G  I+++  G++L   Y + G+   V L ++  I+ ++P
Sbjct: 216 RRPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVP 275

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI     ++ +    +      + +   +      K + P ++G  + +  +   F 
Sbjct: 276 YVGPIIAITPALIIAFIDSPGMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFI 335

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++      G++G+ +     A++ V+
Sbjct: 336 ILTAGNLFGIMGIILAIPGYAILKVL 361


>gi|149919863|ref|ZP_01908339.1| hypothetical protein PPSIR1_12198 [Plesiocystis pacifica SIR-1]
 gi|149819310|gb|EDM78743.1| hypothetical protein PPSIR1_12198 [Plesiocystis pacifica SIR-1]
          Length = 482

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 76/206 (36%), Gaps = 9/206 (4%)

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            D        F     ++    I   +   F   D   I +   SL   ++   ++ ++ 
Sbjct: 225 TDLAAAGVRGFISGVANFLADFILAFLIAAFVLVDTQRIGRFTRSLVPEVYLGEFEDLAA 284

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTA 264
            + + +     G  +I +  G +      + GV   + L ++ A++++IP  G  I+   
Sbjct: 285 GIDEGMAGVARGQILICVINGTLTYIGLLIFGVHYSLLLAMVAAMLSIIPVAGILIATIP 344

Query: 265 VSIYLLIKGNI--------FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           V    L+ G++          +  +  W      +    L P ++G    +  +   F L
Sbjct: 345 VMGVALLSGDLGLEAGLAFGKSAAVLGWLVGIHLLETNYLNPKIIGIASNIHPVVLIFAL 404

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIW 342
           + G+   GLLG  +   + ++   ++
Sbjct: 405 LAGLDVGGLLGAVLAIPVASVFQTVF 430


>gi|218898431|ref|YP_002446842.1| membrane protein YubA [Bacillus cereus G9842]
 gi|218545728|gb|ACK98122.1| membrane protein YubA [Bacillus cereus G9842]
          Length = 373

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 121/326 (37%), Gaps = 5/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + FLK  F PVL A ++ +   P + S + KK  S         + V+ LF+
Sbjct: 41  ISFVFTPFIVFLKTIFFPVLLAGVLFYILHP-FVSLLEKKGVSRIVSIASIYLIVIGLFV 99

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             ++ +      ++  L+  +           R      G         ++L+   +  +
Sbjct: 100 FLVVTVIPIIKDQIDALIDNLPYFGHEIEQAARRF----GESNLLGKIQENLNINVANMV 155

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   T  +  +    + F     +  L+ + +   LF+  +DG  +           
Sbjct: 156 KDYTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQ 215

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +I   +   I S   G  I+++  G++L   Y + G+   V L ++  I+ ++P
Sbjct: 216 RQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVP 275

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI     ++ +    +      + +   +      K + P ++G  + +  +   F 
Sbjct: 276 YVGPIIAITPALIIAFIDSPAMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFI 335

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++      G++G+ +     A++ V+
Sbjct: 336 ILTAGNLFGIMGIILAIPGYAILKVL 361


>gi|312962336|ref|ZP_07776827.1| hypothetical protein PFWH6_4255 [Pseudomonas fluorescens WH6]
 gi|311283263|gb|EFQ61853.1| hypothetical protein PFWH6_4255 [Pseudomonas fluorescens WH6]
          Length = 357

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/342 (14%), Positives = 128/342 (37%), Gaps = 14/342 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + ++ V ++ L     P L AL++ +   P+                   T+ V+ +F +
Sbjct: 13  IVLLCVFVFLLHSILTPFLVALLLAYLFDPVVDRLEKAGLSR--------TLGVVAVFAL 64

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLK 134
             L +    ++ +  L  ++    +    +  WL    +P       L        +   
Sbjct: 65  FTLIITALVLVLVPMLAKQLFRLYELAPQMLDWLQHTAMPWAQAKLGLSDGFWKFDKVKA 124

Query: 135 ILSETFLKT-NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            +SE   +T + +  I   A+   +  + +  +++ + +  F+  RD   +  ++ SL  
Sbjct: 125 AISEHMGQTTDIVGVILSQATASSLALIGWLTNLVLIPVVAFYLLRDWDIMMAKIRSLLP 184

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                    ++    +V+ +   G  ++ +  G++  +     G+   + +G+I  + A+
Sbjct: 185 RDREERIVSLAGECHEVLGAFVRGQLLVMLALGIIYAAGLMAIGLELGLLIGLIAGLAAI 244

Query: 254 IPGGAPISFTAVSI---YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +P    +     ++        G+++    +     +   +    L P LVG  I L  +
Sbjct: 245 VPYMGFVIGIGAALVAGLFQFGGDLYPMLGIVAVFMVGQALEGMVLTPLLVGDRIGLHPV 304

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              F ++ G    G  G+ +   + A+I V+ +      K++
Sbjct: 305 AVIFAILAGGELFGFTGILLALPVAAVIMVLVRHMHDLYKDS 346


>gi|228993324|ref|ZP_04153240.1| Sporulation integral membrane protein YtvI [Bacillus pseudomycoides
           DSM 12442]
 gi|228999377|ref|ZP_04158956.1| hypothetical protein bmyco0003_39320 [Bacillus mycoides Rock3-17]
 gi|229006932|ref|ZP_04164562.1| hypothetical protein bmyco0002_38330 [Bacillus mycoides Rock1-4]
 gi|228754332|gb|EEM03747.1| hypothetical protein bmyco0002_38330 [Bacillus mycoides Rock1-4]
 gi|228760322|gb|EEM09289.1| hypothetical protein bmyco0003_39320 [Bacillus mycoides Rock3-17]
 gi|228766392|gb|EEM15035.1| Sporulation integral membrane protein YtvI [Bacillus pseudomycoides
           DSM 12442]
          Length = 363

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 59/349 (16%), Positives = 128/349 (36%), Gaps = 12/349 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +   I   +L ++ G   P + AL   +   P+ +    K +       +++ +
Sbjct: 2   RLIFVILATTIGFYALLYVSGLIYPFIIALAFAYLINPVVNFLNQKLQFPRALAVLVSLI 61

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V       +   +  +         +L +K   
Sbjct: 62  LVFGAIVGLVTYLVTEAISATTYLLQIVTEKFPAIVQYAQQFALNNIMPLYDDLISKFNH 121

Query: 129 HPQSLKILSETFLKTNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +S +      ++  G +           I    + F          ++F+++A FF  
Sbjct: 122 LGESQQYTITQNIQNLGTEATKQMKELLTAIISGLTNFISALPTTLTVLVFILLATFFIS 181

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D  +++ ++  L  +    Y K I   + K +         +     +++     +  V
Sbjct: 182 FDWHTLAHKVKRLLPNRIHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRV 241

Query: 239 PSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P  + + +IT I+ ++P  G    F    IY+   G+      L +   + + +  + + 
Sbjct: 242 PYAITIAIITGIVDLLPYLGTGAVFVPWIIYVFFTGDTAFTIGLLILYIVVI-VQRQIME 300

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           P ++   I L  LPT   L  G +  G LGL IGPV + L+  + K  +
Sbjct: 301 PKVLSSNIGLDPLPTLIALFVGFKLYGFLGLIIGPVTLVLLNTLHKAHV 349


>gi|239626667|ref|ZP_04669698.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516813|gb|EEQ56679.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 419

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/344 (14%), Positives = 113/344 (32%), Gaps = 4/344 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           ++ +     +    F      A I+      I    +  +E S     V   V+++ +  
Sbjct: 31  LLEVAAALFHMAWPFILGAAIAFILNVPMRNIERHLVMFRENSRLRRPVSLVVTILLVSG 90

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-MWASELWTKHLSHPQSLK 134
           +  L  F      +K  ++           +   +  +        +         Q + 
Sbjct: 91  ILFLVTFVVTPQLLKTFLTLQSSVPLFFAGLKDEMEQLFASFPQILDYVNHVEVDWQQVF 150

Query: 135 ILSETFLKTNGIDFIP---RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                FLKT     +      A         + +  IF I  L      G  + + L + 
Sbjct: 151 QDMMGFLKTGAGTMLNNTFSAAVSIVSGVSSFLIGFIFAIYILLQKETLGRQVRKLLSAF 210

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                     +I+ +  +   +   G  + A+  G +      L  +P  + +GV+ A  
Sbjct: 211 LPESVTGRIVEIASLTERTFSNFLTGQCVEAVILGTMFFVVLTLGRLPYALLIGVLIAFT 270

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           A+IP         V ++L++     +A    +   +   I    + P++VG  + LP + 
Sbjct: 271 ALIPIFGAFIGLGVGVFLMLMVEPMDALIFTIIFFVLQQIEGNLIYPYVVGNSVGLPSIW 330

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
               +  G   MG++G+ I   L +++  + ++ +       + 
Sbjct: 331 VLVAVTLGGSMMGIVGMLIFIPLCSVLYALLRDEVNGRLNRPKP 374


>gi|330469076|ref|YP_004406819.1| hypothetical protein VAB18032_25605 [Verrucosispora maris
           AB-18-032]
 gi|328812047|gb|AEB46219.1| hypothetical protein VAB18032_25605 [Verrucosispora maris
           AB-18-032]
          Length = 416

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/295 (16%), Positives = 107/295 (36%), Gaps = 13/295 (4%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
           ++ +     +    +  +S +   +  L  +    ++ + +L  +          +  WL
Sbjct: 111 WLLRLRVPRSLATAVVLISGLGAVVGTLTLVVNQFIVGLPDLSVRAAAGI---GQIQDWL 167

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
            D P G+   +L     +  + +   S++         +   A       ++     + +
Sbjct: 168 RDGPLGLSDGQLNGYVEAGQKWINENSQS---------LTSGAINTAGTVVEVFTGTLLV 218

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           + A+FFF RDG  I + L  +             R     + +      ++A  + L +G
Sbjct: 219 LFAMFFFLRDGDRIWRFLVGMLPVAARWRTDDAGRASWLTLVAYVRATVLVAFIDALGIG 278

Query: 231 SAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
            A  L  VP    L  +  + A IP  GA +S     +  L+      A  +     +  
Sbjct: 279 IALVLFDVPFAFPLAALVFLGAFIPIVGATLSGAVAVLVALVDSGWVTALAILGAVIVVQ 338

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +    L+P+++G  + L  LP    +  GV   G++G  +   L+A++    + 
Sbjct: 339 QVEGNVLQPWIMGRAVALHPLPVVLAVTAGVVLDGIVGALVAVPLIAVLNTAVRR 393


>gi|317009456|gb|ADU80036.1| outer membrane protein [Helicobacter pylori India7]
          Length = 348

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 135/363 (37%), Gaps = 25/363 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  Q     + +      +Y  + F    L A ++    + +      +        + +
Sbjct: 1   MKAQYFFWILFLIGFYWMIYLYQDFLMDALIAGLLCVGFFQVKVFLDKRFFN--VVSSFL 58

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +  + IVPL F+ Y     + E+        +    + +WL         +E  + 
Sbjct: 59  CVLVLASVLIVPLYFIVYKSSNIIFEI------NFEKFSALIKWLKG-----TITENLSH 107

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +         E F   +   ++ + +S  G   L      +F++  LFFF+  G    
Sbjct: 108 FPTIHDGASKFLENFSAASITGYLLKISSYVGRYSLKLITDALFILGLLFFFFYYGERFY 167

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +   L     KKI   V  ++R   L   I  I EG+  G      G      LG
Sbjct: 168 RYFLGVLP-LGIHQSKKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFGHDGWS-LG 225

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLV-- 301
           ++  + +++P  G  + +  ++IY L  GN+  A  + L+  + +  ++D  ++P L+  
Sbjct: 226 ILYGLASLVPAVGGALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVF 285

Query: 302 ------GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                    +K+  +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 286 IKKRIFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345

Query: 356 ISS 358
              
Sbjct: 346 ACE 348


>gi|158317061|ref|YP_001509569.1| hypothetical protein Franean1_5305 [Frankia sp. EAN1pec]
 gi|158112466|gb|ABW14663.1| protein of unknown function UPF0118 [Frankia sp. EAN1pec]
          Length = 464

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/345 (15%), Positives = 115/345 (33%), Gaps = 21/345 (6%)

Query: 17  MFIILVSLYFL-------KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           + II  ++Y L       +    PV++ L+I     PI   F  +        A  A + 
Sbjct: 129 LLIIGTAVYVLAMIVGRVRIVVIPVIAGLLIAALIHPIAHRF-QRMGVPRLGAAFAALLI 187

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + L +   + + +    E+  +  +V         V  +L+D P  +   ++       
Sbjct: 188 FLLLVVGAGVAVGFNAANEIPAVADQVSEGVD---QVRDYLTDGPFHLSQGQIDNLVDDI 244

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S+         T+    +         +  +   SI+  + + FFF  DG  I   + 
Sbjct: 245 RSSI---------TSNRGRVVSGVLSTASVAAEVLTSILVALFSTFFFLYDGERIWSWIV 295

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +          +   R     +     G   +A  + + +       G P    L ++T 
Sbjct: 296 TRFPSGAEDRVRGAGREAWLTLTGYIRGTVFVAAVDAVGITIGLVAVGAPLVAPLALLTF 355

Query: 250 IMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
               IP  GA ++  A  +  L+   + +A  +         +    L+P ++   ++L 
Sbjct: 356 FGGFIPIVGATVAGIAAVLVALVSNGVPDALIILGVVIAVQQVEGHLLQPLVMRRAVRLH 415

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L     L  G    G+ G       +A++  +      A K+ +
Sbjct: 416 PLAIVIALSAGGVLAGIPGAIAAVPFVAVVNRVATYLASAGKDPQ 460


>gi|324327274|gb|ADY22534.1| hypothetical protein YBT020_16520 [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 373

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 121/326 (37%), Gaps = 5/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + FLK  F PVL A ++ +   P + S + KK  S         + V+ LF+
Sbjct: 41  ISFVFTPFIVFLKTIFFPVLLAGVLFYILHP-FVSLLEKKGVSRIVSIASIYLIVIGLFV 99

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +L +      ++  L+  +           R      G         ++L+   +  +
Sbjct: 100 FLVLTVIPIIKDQIDALIDNLPYFGHEIERAARRF----GESNLLGKIQENLNIDVASMV 155

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   T  +  +    + F     +  L+ + +   LF+  +DG  +           
Sbjct: 156 KDYTVDFTKSLSSVTGNVTGFLSTITEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQ 215

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +I   +   I S   G  I+++  G++L   Y + G+   V L ++  I+ ++P
Sbjct: 216 RRPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVP 275

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI     ++ +    +      + +   +      K + P ++G  + +  +   F 
Sbjct: 276 YVGPIIAITPALIIAFIDSPGMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFI 335

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++      G++G+ +     A++ V+
Sbjct: 336 ILTAGNLFGIMGIILAIPGYAILKVL 361


>gi|228940410|ref|ZP_04102980.1| hypothetical protein bthur0008_30580 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228973326|ref|ZP_04133915.1| hypothetical protein bthur0003_30860 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228979889|ref|ZP_04140210.1| hypothetical protein bthur0002_30620 [Bacillus thuringiensis Bt407]
 gi|228779904|gb|EEM28150.1| hypothetical protein bthur0002_30620 [Bacillus thuringiensis Bt407]
 gi|228786522|gb|EEM34512.1| hypothetical protein bthur0003_30860 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228819252|gb|EEM65307.1| hypothetical protein bthur0008_30580 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 376

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 121/326 (37%), Gaps = 5/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + FLK  F PVL A ++ +   P + S + KK  S         + V+ LF+
Sbjct: 44  ISFVFTPFIVFLKTIFFPVLLAGVLFYILHP-FVSLLEKKGVSRIVSIASIYLIVLGLFV 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             ++ +      ++  L+  +           R      G         ++L+   +  +
Sbjct: 103 FLVVTVIPIIKDQIDALIDNLPYFGHEIEQAARRF----GESNLLGKIQENLNINVANMV 158

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   T  +  +    + F     +  L+ + +   LF+  +DG  +           
Sbjct: 159 KEYTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQ 218

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +I   +   I S   G  I+++  G++L   Y + G+   V L ++  I+ ++P
Sbjct: 219 RQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVP 278

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI     ++ +    +      + +   +      K + P ++G  + +  +   F 
Sbjct: 279 YVGPIIAITPALIIAFIDSPGMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFI 338

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++      G++G+ +     A++ V+
Sbjct: 339 ILTAGNLFGIMGIILAIPGYAILKVL 364


>gi|229543555|ref|ZP_04432615.1| sporulation integral membrane protein YtvI [Bacillus coagulans
           36D1]
 gi|229327975|gb|EEN93650.1| sporulation integral membrane protein YtvI [Bacillus coagulans
           36D1]
          Length = 372

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/350 (14%), Positives = 122/350 (34%), Gaps = 14/350 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G+   + + +   ++Y    +  P + AL+I     P+ +    K         +I+ +
Sbjct: 11  RGLFVALCILVGFFAVYLAVKYAYPFIIALLIALMINPLVNFLDRKVRLPRALAVLISLI 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ +F+  +  L    +     L   +    Q  +     L      +   +       
Sbjct: 71  LIIGVFVGIITLLVAEIVTGANYLADVLPEHVQTLVNYSESLVTAQV-LPLYDQLAGLFK 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFL-----------DYCLSIIFMIIALFFF 177
           +  + +  +           I   A  F                +    +IF ++A FF 
Sbjct: 130 NLDAGQQETIVQNIQAAGQKIASSAGDFLSGLFKKLPGLVSWIPNAATVLIFALLATFFI 189

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            +D   ++ +   L           +   +   +         +     +++     +  
Sbjct: 190 SKDWNQLTGKGKLLLPKKARKSGITVFADLRNALFGFVRAELTLISMTLVIVLIGLLILR 249

Query: 238 VPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           V   + + ++  I+ ++P  G  + F    IY  I G++  A  L +   + + +  + +
Sbjct: 250 VDYAITIALVCGIVDILPYLGTGVVFVPWIIYEFITGSLPLAIGLTVLYIVVI-VQRQIM 308

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            P ++   I +  L T   L  G +T+G LGL +GP+ + L+  + +  +
Sbjct: 309 EPKILSSSIGMNPLATLIALFIGFKTVGFLGLILGPITLVLLTALIRAHV 358


>gi|165868397|ref|ZP_02213057.1| putative membrane protein [Bacillus anthracis str. A0488]
 gi|167631786|ref|ZP_02390113.1| putative membrane protein [Bacillus anthracis str. A0442]
 gi|167637242|ref|ZP_02395522.1| putative membrane protein [Bacillus anthracis str. A0193]
 gi|170684738|ref|ZP_02875963.1| putative membrane protein [Bacillus anthracis str. A0465]
 gi|170704986|ref|ZP_02895451.1| putative membrane protein [Bacillus anthracis str. A0389]
 gi|177649869|ref|ZP_02932870.1| putative membrane protein [Bacillus anthracis str. A0174]
 gi|190564566|ref|ZP_03017487.1| putative membrane protein [Bacillus anthracis Tsiankovskii-I]
 gi|196035580|ref|ZP_03102984.1| putative membrane protein [Bacillus cereus W]
 gi|196038071|ref|ZP_03105381.1| putative membrane protein [Bacillus cereus NVH0597-99]
 gi|196042964|ref|ZP_03110203.1| putative membrane protein [Bacillus cereus 03BB108]
 gi|218904496|ref|YP_002452330.1| hypothetical protein BCAH820_3380 [Bacillus cereus AH820]
 gi|225865335|ref|YP_002750713.1| YubA [Bacillus cereus 03BB102]
 gi|227813813|ref|YP_002813822.1| hypothetical protein BAMEG_1218 [Bacillus anthracis str. CDC 684]
 gi|229604616|ref|YP_002867574.1| hypothetical protein BAA_3443 [Bacillus anthracis str. A0248]
 gi|254685931|ref|ZP_05149790.1| permease [Bacillus anthracis str. CNEVA-9066]
 gi|254723334|ref|ZP_05185122.1| permease [Bacillus anthracis str. A1055]
 gi|254738401|ref|ZP_05196104.1| permease [Bacillus anthracis str. Western North America USA6153]
 gi|254742432|ref|ZP_05200117.1| permease [Bacillus anthracis str. Kruger B]
 gi|254752717|ref|ZP_05204753.1| permease [Bacillus anthracis str. Vollum]
 gi|254761231|ref|ZP_05213255.1| permease [Bacillus anthracis str. Australia 94]
 gi|164715123|gb|EDR20640.1| putative membrane protein [Bacillus anthracis str. A0488]
 gi|167514749|gb|EDR90115.1| putative membrane protein [Bacillus anthracis str. A0193]
 gi|167532084|gb|EDR94720.1| putative membrane protein [Bacillus anthracis str. A0442]
 gi|170129841|gb|EDS98703.1| putative membrane protein [Bacillus anthracis str. A0389]
 gi|170670998|gb|EDT21736.1| putative membrane protein [Bacillus anthracis str. A0465]
 gi|172083821|gb|EDT68880.1| putative membrane protein [Bacillus anthracis str. A0174]
 gi|190563883|gb|EDV17847.1| putative membrane protein [Bacillus anthracis Tsiankovskii-I]
 gi|195991881|gb|EDX55845.1| putative membrane protein [Bacillus cereus W]
 gi|196026448|gb|EDX65116.1| putative membrane protein [Bacillus cereus 03BB108]
 gi|196031341|gb|EDX69938.1| putative membrane protein [Bacillus cereus NVH0597-99]
 gi|218540215|gb|ACK92613.1| putative membrane protein [Bacillus cereus AH820]
 gi|225786385|gb|ACO26602.1| YubA [Bacillus cereus 03BB102]
 gi|227004470|gb|ACP14213.1| putative membrane protein [Bacillus anthracis str. CDC 684]
 gi|229269024|gb|ACQ50661.1| putative membrane protein [Bacillus anthracis str. A0248]
          Length = 373

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 121/326 (37%), Gaps = 5/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + FLK  F PVL A ++ +   P + S + KK  S         + V+ LF+
Sbjct: 41  ISFVFTPFIVFLKTIFFPVLLAGVLFYILHP-FVSLLEKKGVSRIVSIASIYLIVIGLFV 99

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +L +      ++  L+  +           R      G         ++L+   +  +
Sbjct: 100 FLVLTVIPIIKDQIDALIDNLPYFGHEIERAARRF----GESNLLGKIQENLNIDVASMV 155

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   T  +  +    + F     +  L+ + +   LF+  +DG  +           
Sbjct: 156 KDYTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQ 215

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +I   +   I S   G  I+++  G++L   Y + G+   V L ++  I+ ++P
Sbjct: 216 RQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVP 275

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI     ++ +    +      + +   +      K + P ++G  + +  +   F 
Sbjct: 276 YVGPIIAITPALIIAFIDSPGMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFI 335

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++      G++G+ +     A++ V+
Sbjct: 336 ILTAGNLFGIMGIILAIPGYAILKVL 361


>gi|163848208|ref|YP_001636252.1| hypothetical protein Caur_2657 [Chloroflexus aurantiacus J-10-fl]
 gi|222526116|ref|YP_002570587.1| hypothetical protein Chy400_2873 [Chloroflexus sp. Y-400-fl]
 gi|163669497|gb|ABY35863.1| protein of unknown function UPF0118 [Chloroflexus aurantiacus
           J-10-fl]
 gi|222449995|gb|ACM54261.1| protein of unknown function UPF0118 [Chloroflexus sp. Y-400-fl]
          Length = 432

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/353 (15%), Positives = 120/353 (33%), Gaps = 23/353 (6%)

Query: 9   QGIMRWMIMFIILVSL-YFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +   RW+++   +  + + L        P +   ++ +   P+ + F         +LA+
Sbjct: 10  RQAARWLLIGFSIYLIGWLLSAAGSAVTPFIFGGVLAYLFLPLVNFFNRWL---PRWLAI 66

Query: 65  IAT--------VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
           +          V+ +   + PL+      +  + ++ +    AN+      + L+ +P  
Sbjct: 67  LTVYLLTFGAIVAAIAFVVPPLIAQITELIRALPDIATIQREANRLIDEYEQLLASLPPA 126

Query: 117 MWASELWTKHLSHPQSLKILSETFLK--TNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
           + A        +  + L  L   F+        F+        +  + + L    +   L
Sbjct: 127 LQAEVQSAIASATAEGLSTLRANFVSYLQGVGQFLVNSVLSV-VNTVTFLLGFFLVPFWL 185

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           F+   D  +    LD +      A +  +  I+   +     G  I+    GL       
Sbjct: 186 FYVLMDQRAGRAYLDRMIHPRLRADFWAMVTIIDHDLSGYLRGQLILGTSVGLAAWIGLT 245

Query: 235 LAG-----VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
                   +P  V L V+  +  ++P   PI     +I L +  +   A  + +      
Sbjct: 246 ALNMAGMNIPYTVLLAVVAGVTELVPVIGPIIGAIPAILLGLADSPTTALAVTILYIAIQ 305

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            + +  L P ++G  + +        LV   +  GLLG  +   L A+   ++
Sbjct: 306 QLENHILVPRIIGESVGVHPAILMVVLVVCSQVFGLLGAILSAPLSAMARDLF 358


>gi|298286885|sp|Q04454|Y178_BACPE RecName: Full=UPF0118 membrane protein BpOF4_00890; AltName:
           Full=ORF2
          Length = 385

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 115/325 (35%), Gaps = 2/325 (0%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + + LV+ YF+     P+++AL+      P  ++   K +       ++     +    +
Sbjct: 49  ILLFLVAAYFILPVSLPLVAALLTALILTPAVNALQRKTKIKRNVAVMLVFTVFVVFIGL 108

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
              ++    + +  ++V                        + +           ++   
Sbjct: 109 SGYYIATKAITQGTQIVENSPQYISDINRAWLNFQRNLEEKYENLPPELVQEINITVTNT 168

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                       + +  +        Y ++ +  +IALF F  +   + ++L S      
Sbjct: 169 LSDLRSNISDRNLIQDITSLISSIPGYLVTFLVYLIALFLFMLELPRLREKLYSYLSERT 228

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
                 ++  +  VI   F    +++I   +V             + +  I  ++  +P 
Sbjct: 229 KEKVNFMTSRLSYVIWGFFKAQFLVSIIIFIVTLIGLLFIAPEVALLMAFIIWLIDFVPI 288

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ +     +I+ LI G++   + L +  A  L I+ +T+ P ++G  I L  L T   
Sbjct: 289 IGSIVILAPWAIFQLIVGDVSTGSKLLIL-AAVLLIIRRTVEPKVMGKHIGLSPLATLIA 347

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAV 340
           +  G+   G++G  IGP+L+     
Sbjct: 348 MYLGLMLFGVIGFIIGPLLVIAFTS 372


>gi|229031038|ref|ZP_04187052.1| hypothetical protein bcere0028_30950 [Bacillus cereus AH1271]
 gi|228730284|gb|EEL81250.1| hypothetical protein bcere0028_30950 [Bacillus cereus AH1271]
          Length = 376

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/337 (16%), Positives = 125/337 (37%), Gaps = 5/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + FLK  F PVL A ++ +   P + S + KK  S         + V+ LF+
Sbjct: 44  ISFVFTPFIVFLKTIFFPVLLAGVLFYILHP-FVSLLEKKGVSRIVSIASIYIIVLGLFV 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             ++ +      ++  L+  +           R      G         ++L+   +  +
Sbjct: 103 FLVVTVIPIIKDQIDALIDNLPYFGHEIERAARRF----GESNLLGKIQENLNIDVASMV 158

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   T  +  +    + F     +  L+ + +   LF+  +DG  +           
Sbjct: 159 KDYTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQ 218

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +I   +   I S   G  I+++  G++L   Y + G+   V L ++  I+ ++P
Sbjct: 219 RQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVP 278

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI     ++ +    +      + +   +      K + P ++G  + +  +   F 
Sbjct: 279 YVGPIIAITPALIIAFIDSPSMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFI 338

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           ++      G++G+ +     A++ V+   S   +K N
Sbjct: 339 ILTAGNLFGIMGIILAIPGYAILKVLVTHSYRFVKLN 375


>gi|154686882|ref|YP_001422043.1| YrrI [Bacillus amyloliquefaciens FZB42]
 gi|154352733|gb|ABS74812.1| YrrI [Bacillus amyloliquefaciens FZB42]
          Length = 353

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/318 (17%), Positives = 111/318 (34%), Gaps = 15/318 (4%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
             +K  F P+  A+ I +   PI      K          ++ + + CLF   + +  Y 
Sbjct: 37  LVIKSLFIPIFIAVFIAYLLLPITEWLHRKGMPR-----TLSLLLIYCLFFGGIGWGVYK 91

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
           G+  + E +  +  +          +           L       P  +    +  ++  
Sbjct: 92  GVPVLIEQLQDLSESIPGLAKNYNSM--------LKHLHNHTDHWPDGMHHRMDKMIQQT 143

Query: 145 GIDFIPRFASRFGMI--FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                    S    I   LDY L    +   +F+  +D   + + +  L    +     +
Sbjct: 144 ETFLAGTIESTIRSIRFVLDYILIAATIPFLVFYMVKDIDVMKKTVWYLTPKSWRKRGSE 203

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             R V   +     G  ++    GL+ G ++WL G+P  + LG+   I  +IP   P   
Sbjct: 204 FLRDVDDSLGDYIRGQLLVCFLLGLIAGVSFWLFGLPYPLILGLAIGITNVIPYFGPFIG 263

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ L +  +      + +   I  FI    L P +VG  +++  +     L+ G   
Sbjct: 264 AVPALLLALAISAKAVIIVIVTIFILQFIEGNILSPLIVGRSLRMHPVVIMLALLAGGEL 323

Query: 323 MGLLGLFIGPVLMALIAV 340
            G+ G+ +     A++ V
Sbjct: 324 AGIPGMILAVPAAAVLKV 341


>gi|310659377|ref|YP_003937098.1| hypothetical protein CLOST_2073 [Clostridium sticklandii DSM 519]
 gi|308826155|emb|CBH22193.1| conserved membrane protein of unknown function [Clostridium
           sticklandii]
          Length = 373

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 60/321 (18%), Positives = 119/321 (37%), Gaps = 4/321 (1%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  FF P +   II   + P+     +  +      ++I  +  + L I+   F      
Sbjct: 31  LAVFFMPFVIGWIIALIANPLVKFLENHVKIVRKHGSMIIIIFALTLVIITGYFGISRIY 90

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMW--ASELWTKHLSHPQSLKILSETFLKTN 144
            E+  L+  +             +S    G++    E     LS       +      +N
Sbjct: 91  KELITLIQNLPEIYNSLSLDIEKISHNFQGIYKLMPEEVQISLSSIGEELSVGAANGISN 150

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
                   A RF        ++II  I+A +FF  D  +IS+ + +L      A +  I+
Sbjct: 151 IGKPTFTAAGRFAKNIPSTFINIIITILAAYFFIVDKENISRGIKNLVSDDIFAVFTDIT 210

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
             +  ++   F     I     ++L   + +  +     L +  A++   P  G      
Sbjct: 211 NRLKFLVGGYFKAQFKIMGIVAVILFVGFLILDIGYSFLLALGIALLDFFPFFGTGAVLI 270

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             +I+ ++ G+   A  LFL   I   +V + ++P ++G  I L  L T F +  G +  
Sbjct: 271 PWTIFKVLTGDYRLAIGLFLIYIISQ-VVRQIVQPKVLGDTIGLNPLATLFFMFIGFKLG 329

Query: 324 GLLGLFIGPVLMALIAVIWKE 344
            ++GL +   +  +    ++E
Sbjct: 330 SVIGLVLAVPIGMIFINFYEE 350


>gi|297529302|ref|YP_003670577.1| sporulation integral membrane protein YtvI [Geobacillus sp. C56-T3]
 gi|297252554|gb|ADI26000.1| sporulation integral membrane protein YtvI [Geobacillus sp. C56-T3]
          Length = 341

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/332 (14%), Positives = 113/332 (34%), Gaps = 4/332 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           + RWMI+ ++     +L  +  P+L AL       P         +              
Sbjct: 1   MKRWMIIALLFAVGLWLVPYSVPLLFALATALLLEPSIRRLQENYKLKRVHAVTAIFSLF 60

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +  + L FL    + ++  L  K+         V   L       ++S +  + +   
Sbjct: 61  IIILGLSLYFLVVIFVQQVMALSQKLPYVLNEATKVLDRLIQT-WQSYSSSIPQEIIDSL 119

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           +      E  L +   +           I   + +  +  +IALF    D   + Q +  
Sbjct: 120 ERGVNTVEQMLLSFATNLTQSLVHYIAAI-PAFLIHFLVYLIALFLICLDLPQLKQGMRR 178

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                       +   + K          ++++    +  S  ++ GV     + ++  +
Sbjct: 179 YLSERTEQRLGMVVAQLSKAGIGFLKAQFLLSLITFFLALSGLFVLGVDYAALMALVIVV 238

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           + ++P  G         +  +  GN      L +   + + +V + + P +    + +  
Sbjct: 239 VDILPILGTGSVLVPWGLISMANGNNTLGIGLIVL-FVVITVVRRIIEPKVFSTNLGISP 297

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           L     +  G + +G +GLF+GPV++ L+  +
Sbjct: 298 LAALVSVYLGFQLLGFIGLFVGPVVVILVEAL 329


>gi|217032380|ref|ZP_03437875.1| hypothetical protein HPB128_25g28 [Helicobacter pylori B128]
 gi|298736258|ref|YP_003728784.1| hypothetical protein HPB8_763 [Helicobacter pylori B8]
 gi|216945947|gb|EEC24563.1| hypothetical protein HPB128_25g28 [Helicobacter pylori B128]
 gi|298355448|emb|CBI66320.1| conserved hypothetical membrane protein [Helicobacter pylori B8]
 gi|317012381|gb|ADU82989.1| hypothetical protein HPLT_02815 [Helicobacter pylori Lithuania75]
          Length = 348

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 136/363 (37%), Gaps = 25/363 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  Q     + +      +Y  + F    L A ++    + +      +        + +
Sbjct: 1   MKAQYFFWILFLIGFYWMIYLYQDFLMDALIAGLLCVGFFQVKVFLDKRFFN--VVSSFL 58

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +  + IVPL F+ Y     + E+        +    + +WL         +E  + 
Sbjct: 59  CVLILASVLIVPLYFIVYKSSNIIFEI------NFEKFSALIKWLKG-----TITENLSH 107

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +    +    E F   +   ++ + +S  G   L      +F++  LFFF+  G    
Sbjct: 108 FPAIHDGVSKFLENFSAASITGYLLKISSYVGRYSLKLITDALFILGLLFFFFYYGERFY 167

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +   L     KKI   V  ++R   L   I  I EG+  G      G      LG
Sbjct: 168 RYFLGVLP-LGINQSKKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFGHDGWS-LG 225

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLV-- 301
           ++  + +++P  G  + +  ++IY L  GN+  A  + L+  + +  ++D  ++P L+  
Sbjct: 226 ILYGLASLVPAVGGALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVF 285

Query: 302 ------GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                    +K+  +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 286 IKKRIFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345

Query: 356 ISS 358
              
Sbjct: 346 ACE 348


>gi|217033512|ref|ZP_03438941.1| hypothetical protein HP9810_905g31 [Helicobacter pylori 98-10]
 gi|216944037|gb|EEC23468.1| hypothetical protein HP9810_905g31 [Helicobacter pylori 98-10]
          Length = 331

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 64/345 (18%), Positives = 131/345 (37%), Gaps = 25/345 (7%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           +Y  + F    L A ++    + +      +        + +  + +  + IVPL F+ Y
Sbjct: 2   IYLYQDFLMDALIAGLLCVGFFQVKVFLDKRFLN--LISSFLCVLVLASVLIVPLYFIVY 59

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                + E+        +    + +WL         +E  +   +         E F   
Sbjct: 60  KSSNIIFEI------NFEKFSALIKWLKG-----TITENLSHFPTIHDGASKFLENFSAA 108

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           +   ++ R +S  G   L      +F++  LFFF+  G    +    +   L     KKI
Sbjct: 109 SITGYLLRISSYVGKYSLKLITDALFILGLLFFFFYYGERFYRYFLGVLP-LGMNQSKKI 167

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISF 262
              V  ++R   L   I  I EG+  G      G      LG++  + +++P  G  + +
Sbjct: 168 FEEVAGILRIVLLTSLITVILEGVAFGLMIVWFGHDGWS-LGILYGLASLVPAVGGALIW 226

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLV--------GGPIKLPFLPTF 313
             ++IY L  GN+  A  + L+  + +  ++D  ++P L+           +K+  +  F
Sbjct: 227 IPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKRIFKTTLKINEMLIF 286

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           F ++ G+   G  G+ +GP + A    + +       +N +K   
Sbjct: 287 FSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQKACE 331


>gi|240141410|ref|YP_002965890.1| hypothetical protein MexAM1_META1p5009 [Methylobacterium extorquens
           AM1]
 gi|240011387|gb|ACS42613.1| conserved hypothetical protein; putative membrane protein
           [Methylobacterium extorquens AM1]
          Length = 677

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 114/357 (31%), Gaps = 24/357 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
               ++  II+  L+F +    P+  A+++ F   P+ + F+ + +    F  +++ +  
Sbjct: 30  ASSLVVFAIIVAGLFFAREVLIPIAIAVLLSFVLGPLVN-FLRRLKLGRAFAVLVSVLLA 88

Query: 71  MCLFIVPLLFLFYYGMLEMKEL--VSKVVLANQHGI------PVPRWLSDI--------- 113
             +       +        +++    + V     G+          ++++I         
Sbjct: 89  AGIIAAVTTVIGVQVAELAQDVPRYQRTVERKIEGLRAGTLGQTMDYIANINRAIHQSGE 148

Query: 114 --PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP--RFASRFGMIFLDYCLSIIF 169
                   ++      S+ ++     +  L             A+           +   
Sbjct: 149 ESKESAEKAKQQAARDSNRKAEPEPPKPLLVQVEERRPGPLELATTVLAPVAQPLATAGI 208

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
           + + L F       +  +L  L                 + +   FLG   +    G+V+
Sbjct: 209 VFVVLLFILMQREDLRDRLIRLAGSSDLHRTTVAMDDAARRLSRYFLGQLALNSAFGVVI 268

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL--FLWGAI 287
           G   W+ GVPS V  G+   +M  +P         + I L    +   +  L  FL  A+
Sbjct: 269 GVGLWIIGVPSPVLWGIFALVMRFVPYIGAFLSAVLPIALAAAVDPGWSMVLSTFLLFAL 328

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              IV + + P + G    +         +      G +GL +   L   + V+ + 
Sbjct: 329 VEPIVGQIIEPLVYGHSTGVSPFSVLVSALFWTWLWGPVGLLLSTPLTVCLVVLGRH 385


>gi|255280602|ref|ZP_05345157.1| putative membrane protein [Bryantella formatexigens DSM 14469]
 gi|255269067|gb|EET62272.1| putative membrane protein [Bryantella formatexigens DSM 14469]
          Length = 381

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/345 (15%), Positives = 123/345 (35%), Gaps = 9/345 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALII----GFTSWPIYSS--FISKKEESSTFLAVIATVS 69
           I + +   L  L+   A +++AL++     F    ++       K+        V++ + 
Sbjct: 36  IAYAVSWMLDLLEPLLAGMIAALVLNVPLCFIERHLFRKNPTPRKERARRPLAIVLSLIL 95

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW--LSDIPGGMWASELWTKHL 127
           V+ +FI   + +    +  +  + S VV        +      S+IP G + S +    +
Sbjct: 96  VLGIFISVAVLVIPELVNAVAAVSSAVVELLDELAALENSADFSEIPFGEYLSRIDIDWI 155

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                L+ + +  L  + ++      S      ++  +  +F I  L    +    + + 
Sbjct: 156 RLRGDLENVLKQ-LGNSILNKAGGAISIAVSSVVNGIVGFVFAIYILANKEKLSRQVRRL 214

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +         A    ++ +   V      G T  AI  G +      +  +P    +G +
Sbjct: 215 IRVWLPEKVGAGIIHVASVCGGVFHLFIAGQTTEAIILGTLCTIGMLILRMPYAPMVGAL 274

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++ A+IP         +  +L++  +   A    ++      +    + P +VG  + L
Sbjct: 275 VSVTALIPYVGGFIAAFIGAFLILTESPVKAVVFVIFFIALQQVEGNLIYPRVVGAKVNL 334

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           P +     +  G    G +G+ +G   +A    + KE+    +  
Sbjct: 335 PSMWVLAAITIGGSLGGPIGMLLGVPTVASAYKLLKEATDKRERR 379


>gi|229139966|ref|ZP_04268530.1| hypothetical protein bcere0013_30720 [Bacillus cereus BDRD-ST26]
 gi|228643481|gb|EEK99748.1| hypothetical protein bcere0013_30720 [Bacillus cereus BDRD-ST26]
          Length = 376

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 121/326 (37%), Gaps = 5/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + FLK  F PVL A ++ +   P + S + KK  S         + V+ LF+
Sbjct: 44  ISFVFTPFIVFLKTIFFPVLLAGVLFYILHP-FVSLLEKKGVSRIVSIASIYLIVIGLFV 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +L +      ++  L+  +           R      G         ++L+   +  +
Sbjct: 103 FLVLTVIPIIKDQIDALIDNLPYFGHEIERAARRF----GESNLLGKIQENLNIDVASMV 158

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   T  +  +    + F     +  L+ + +   LF+  +DG  +           
Sbjct: 159 KDYTVDFTKSLSSVTGNVTGFLSTITEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQ 218

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +I   +   I S   G  I+++  G++L   Y + G+   V L ++  I+ ++P
Sbjct: 219 RRPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVP 278

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI     ++ +    +      + +   +      K + P ++G  + +  +   F 
Sbjct: 279 YVGPIIAITPALIIAFIDSPGMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFI 338

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++      G++G+ +     A++ V+
Sbjct: 339 ILTAGNLFGIMGIILAIPGYAILKVL 364


>gi|117928907|ref|YP_873458.1| hypothetical protein Acel_1700 [Acidothermus cellulolyticus 11B]
 gi|117649370|gb|ABK53472.1| protein of unknown function UPF0118 [Acidothermus cellulolyticus
           11B]
          Length = 429

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/353 (14%), Positives = 116/353 (32%), Gaps = 20/353 (5%)

Query: 14  WMIMFIILVSLYFLKGFF------APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           W ++   +V  + L+ F        P L+A+++     P       +       +A   T
Sbjct: 59  WRLLVTGIVGYFLLRFFIRIEIVVLPFLAAMVMTALLRPPCLWLERR--GLPRLIATWVT 116

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             +  + ++ +     Y      E  + V   +     V  WL+  P  + ++ L     
Sbjct: 117 FLLAFIVVLGVGTAVVY--RTTAEWHTLVSDLSATSDKVRHWLATGPLHLKSTNLKDYQQ 174

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +LK              +         I  +    I+      FF   +G  I   
Sbjct: 175 QFVDALKTHR---------GLVISEVVNGASIAGEVAAGIVLTAFITFFLLYEGERIWTF 225

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                           +R   + +     G  +IA+   +V+  +  +  VP    L ++
Sbjct: 226 CLIPFRPPTARRVDLAARAAWRTLAGYIRGSVLIALFHAVVIAISLLILHVPLVAPLALV 285

Query: 248 TAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             I + +P    +    +S+++ L    +     L +   +E  +    L+PF++   ++
Sbjct: 286 VFITSFLPLIGVLIGGGLSVFVTLGTQGLTAGIILLIILVVEHQLEGHFLQPFIMSRAVR 345

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           L  L     L  G    G++G  +   ++A++   W        E    +++ 
Sbjct: 346 LHPLAVALALAAGGVLGGIIGAILAVPVLAMLKSAWPHLWAPGLELPPTVAAE 398


>gi|210134768|ref|YP_002301207.1| outer membrane protein [Helicobacter pylori P12]
 gi|210132736|gb|ACJ07727.1| outer membrane protein [Helicobacter pylori P12]
          Length = 348

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 135/363 (37%), Gaps = 25/363 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  Q     + +      +Y  + F    L A ++    + +      +        + +
Sbjct: 1   MKAQYFFWILFLIGFYWMIYLYQDFLMDALIAGLLCVGFFQVKVFLDKRFFN--VVSSFL 58

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +  + IVPL F+ Y     + E+        +    + +WL         +E  + 
Sbjct: 59  CVLILASVLIVPLYFIVYKSSNIIFEI------NFEKFSALIKWLKG-----TITENLSH 107

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +         E F   +   ++ + +S  G   L      +F++  LFFF+  G    
Sbjct: 108 FPAIHDGASKFLENFSAASITGYLLKISSYVGRYSLKLITDALFILGLLFFFFYYGERFY 167

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +   L     KKI   V  ++R   L   I  I EG+  G      G      LG
Sbjct: 168 RYFLGVLP-LGINQSKKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFGHDGWS-LG 225

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLV-- 301
           ++  + +++P  G  + +  ++IY L  GN+  A  + L+  + +  ++D  ++P L+  
Sbjct: 226 ILYGLASLVPAVGGALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVF 285

Query: 302 ------GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                    +K+  +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 286 IKKRIFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345

Query: 356 ISS 358
              
Sbjct: 346 ACE 348


>gi|170726523|ref|YP_001760549.1| hypothetical protein Swoo_2171 [Shewanella woodyi ATCC 51908]
 gi|169811870|gb|ACA86454.1| protein of unknown function UPF0118 [Shewanella woodyi ATCC 51908]
          Length = 366

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 61/348 (17%), Positives = 130/348 (37%), Gaps = 15/348 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           +E   +PQ +    I+  I +++YF  G  AP++ ALI+ F   WP+      K   + T
Sbjct: 10  KERFSDPQAVTLVFILLGIALAIYFAGGLLAPLIVALILAFLLEWPVAQML--KIGINRT 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMWA 119
             A +  V  + + ++  L L      +   L++ +      G+   + +++  P  +  
Sbjct: 68  TAASLVLVVFIGVMLLITLGLVPSIWKQGVALITDLPTMLDKGLLTAQTYVNQYPQFVSP 127

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            +L         S+    +  L T  +  I +    +    L   +  I + + +FFF +
Sbjct: 128 EQL--------DSMVAELKKMLDTQHLLDIGKQILGYSASLLVLMVYAILVPLLVFFFLK 179

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D   + +              +K+   + + I +   G  I  +  G+V    + +  + 
Sbjct: 180 DKDQLIKGSKRFIPT-NRELARKVWFEMDQQIFNYIRGKVIEIVIIGVVSYLFFAIMDMR 238

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLR 297
               LGV+T    +IP  GA +    +++    +          + G   +  +D   L 
Sbjct: 239 YAALLGVLTGFSVLIPYVGATLVTLPIALVAFFQWGFSPEFGYLMLGYGIIQALDGNLLV 298

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           P L    + L  +     ++      G+ G+F    L +L+  +    
Sbjct: 299 PLLFSDAVDLHPVFIIAAVLIFGGLWGVWGVFFAIPLASLVKAVINAW 346


>gi|228922070|ref|ZP_04085381.1| hypothetical protein bthur0011_30620 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228837678|gb|EEM83008.1| hypothetical protein bthur0011_30620 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 376

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 121/326 (37%), Gaps = 5/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + FLK  F PVL A ++ +   P + S + KK  S         + V+ LF+
Sbjct: 44  ISFVFTPFIVFLKTIFFPVLLAGVLFYILHP-FVSLLEKKGVSRIVSIASIYLIVLGLFV 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             ++ +      ++  L+  +           R      G         ++L+   +  +
Sbjct: 103 FLVVTVIPIIKDQIDALIDNLPYFGHEIEQAARRF----GESNLLGKIQENLNINVANMV 158

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   T  +  +    + F     +  L+ + +   LF+  +DG  +           
Sbjct: 159 KDYTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQ 218

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +I   +   I S   G  I+++  G++L   Y + G+   V L ++  I+ ++P
Sbjct: 219 RRPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVP 278

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI     ++ +    +      + +   +      K + P ++G  + +  +   F 
Sbjct: 279 YVGPIIAITPALIIAFIDSPAMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFI 338

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++      G++G+ +     A++ V+
Sbjct: 339 ILTAGNLFGIMGIILAIPGYAILKVL 364


>gi|228901850|ref|ZP_04066020.1| hypothetical protein bthur0014_30340 [Bacillus thuringiensis IBL
           4222]
 gi|228909160|ref|ZP_04072988.1| hypothetical protein bthur0013_33150 [Bacillus thuringiensis IBL
           200]
 gi|228850481|gb|EEM95307.1| hypothetical protein bthur0013_33150 [Bacillus thuringiensis IBL
           200]
 gi|228857791|gb|EEN02281.1| hypothetical protein bthur0014_30340 [Bacillus thuringiensis IBL
           4222]
          Length = 376

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 121/326 (37%), Gaps = 5/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + FLK  F PVL A ++ +   P + S + KK  S         + V+ LF+
Sbjct: 44  ISFVFTPFIVFLKTIFFPVLLAGVLFYILHP-FVSLLEKKGVSRIVSIASIYLIVIGLFV 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             ++ +      ++  L+  +           R      G         ++L+   +  +
Sbjct: 103 FLVVTVIPIIKDQIDALIDNLPYFGHEIEQAARRF----GESNLLGKIQENLNINVANMV 158

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   T  +  +    + F     +  L+ + +   LF+  +DG  +           
Sbjct: 159 KDYTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQ 218

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +I   +   I S   G  I+++  G++L   Y + G+   V L ++  I+ ++P
Sbjct: 219 RQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVP 278

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI     ++ +    +      + +   +      K + P ++G  + +  +   F 
Sbjct: 279 YVGPIIAITPALIIAFIDSPAMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFI 338

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++      G++G+ +     A++ V+
Sbjct: 339 ILTAGNLFGIMGIILAIPGYAILKVL 364


>gi|301307821|ref|ZP_07213777.1| putative membrane protein [Bacteroides sp. 20_3]
 gi|300834164|gb|EFK64778.1| putative membrane protein [Bacteroides sp. 20_3]
          Length = 415

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 64/360 (17%), Positives = 133/360 (36%), Gaps = 23/360 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   +++  I+  +  L+    P L A ++ +   P    F  K    S  L+++A +
Sbjct: 46  RIVFGILVISGIIYLIALLRNALLPFLIAWLLAYMMQPFVKFFQYKLCFKSRILSIMAVL 105

Query: 69  SVMCLFIVPLLFLFY-YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             + L I  L+ +       E  + +  +   +     VP               W ++L
Sbjct: 106 VTLGLLITLLVVMVIPSIAAEADKTLELIRTHDPGEGHVP----------LIPHSWMEYL 155

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD-----YCLSIIFMIIALF-FFYRDG 181
               +   + E   K N +  + + A +   I  +     + ++I+F+I+  F F   D 
Sbjct: 156 ESNVNFAQIMELLSKENLLKAVKQIAPQLWSILSNTFSILFSITIVFVILLYFIFILLDY 215

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I+     L    +  + + ++  V   +   F G ++IA+  G++L   + +   P  
Sbjct: 216 EKIANGWIDLIPERYRPFLQGLAEDVEYSMNRYFRGQSLIALSVGVLLAIGFKIINFPLA 275

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGA------IELFIVDKT 295
           V LG+   ++ +IP    I    + +  L++          ++G       I   I D  
Sbjct: 276 VTLGLFIGVLNLIPYMQAIGIIPMILLSLLRSAETGENFWLIFGMAILVLGIVQCIQDLY 335

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L P ++G  + L        L      +G +GL I   L  L    +K  I+      + 
Sbjct: 336 LTPRIMGKAMGLNPAIILLSLSIWGTILGFIGLIIALPLTTLCLSYYKRFILHEDNELDP 395


>gi|289450334|ref|YP_003475067.1| hypothetical protein HMPREF0868_0750 [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289184881|gb|ADC91306.1| conserved hypothetical protein [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 467

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 99/295 (33%), Gaps = 13/295 (4%)

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           V A ++V+ LF++P++      ++      +K +    + +                E  
Sbjct: 101 VFAMMAVVALFVIPVVAETISELISGIPAFAKRLEFKVNELATNN--------PRIVETL 152

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                  + L   +   ++T     + +     G   +    + +  ++   +      +
Sbjct: 153 ETLQIDWRELTEQAVGLMRTQAAGLL-KHILSAGSDLVSGLTTFLVALVLAIYILSSKEN 211

Query: 184 ISQQLDSLGEHLFPAYWKK----ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           + +Q+  L   L           + ++      +   G  + A   GL       +  +P
Sbjct: 212 LQRQMLKLLRALASDKRYDSILSVFKLANATFSAYVSGQFLEACLLGLATYIGMTILKLP 271

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               +GV+  I AMIP        AV   L +  +   A   F++  +   I    + P 
Sbjct: 272 FSGLIGVVVTIFAMIPIVGSFISVAVGTLLTVIEDPGKALIFFIFFIVLQQIEGNFIYPH 331

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           +VG  +KL  L     +  G    G+ G+ +     +++  +  + +      KE
Sbjct: 332 VVGKSVKLSGLWVLVAISIGGSLGGIAGILVSIPTFSVLYSLIGQWVNRCLLRKE 386


>gi|83589888|ref|YP_429897.1| hypothetical protein Moth_1040 [Moorella thermoacetica ATCC 39073]
 gi|83572802|gb|ABC19354.1| Protein of unknown function UPF0118 [Moorella thermoacetica ATCC
           39073]
          Length = 366

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 57/319 (17%), Positives = 119/319 (37%), Gaps = 4/319 (1%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L     P   A ++     P  +    K +    +  +   + V+ +  V L +L    +
Sbjct: 43  LVPIVLPFALAALLAAIIDPAVNLLEKKLKIGRGWAVITTLLLVLAIMGVALFYLLANLI 102

Query: 87  LEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +E++ LV  +   A   G  +  +   + G  +   L    L   QSL   +   LK   
Sbjct: 103 IELESLVLNLPAQARSLGALLQEYFYRLQGFYFGGNLPPNILISFQSLFNNAVNVLKGFL 162

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              +            D+ + +I  ++A +FF RD   I + L  +    +     ++  
Sbjct: 163 TQTVQGLV-IIVSSLPDFFIFVIITLVATYFFSRDKELILRTLLRVMPAGWRERTSRVFS 221

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTA 264
            + + I        ++   +         +  V   + L  +  +  ++P  G    F  
Sbjct: 222 SLGQAIIGYLRAEILLISLQMTQSVLGLLILKVDYALTLAFLIGLADLLPIVGPGTVFIP 281

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             I   I G+      L +  A  + I+ + L+P LV   + L  L T   L  G++ +G
Sbjct: 282 WIIIEFILGHYGLGLALLILYAFII-ILRQVLQPKLVAVNLGLYPLTTLIVLYAGLKLLG 340

Query: 325 LLGLFIGPVLMALIAVIWK 343
           ++GL +GP+ + ++   ++
Sbjct: 341 VVGLALGPLTIVVLKAFFR 359


>gi|150396017|ref|YP_001326484.1| hypothetical protein Smed_0793 [Sinorhizobium medicae WSM419]
 gi|150027532|gb|ABR59649.1| protein of unknown function UPF0118 [Sinorhizobium medicae WSM419]
          Length = 379

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/325 (13%), Positives = 105/325 (32%), Gaps = 9/325 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  Q     +++   +  L        P L+ + + +   P+      +   +     + 
Sbjct: 18  LQRQLFFWLLVLVGFIAFLLVFSSILLPFLAGMALAYFLDPVADRLE-RLGLNRLMATIA 76

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V+ + +  + L+ +      +  E + K+                     W +     
Sbjct: 77  ILVAFVVVLALSLMIIVPLVFTQAAEFIEKMPGYITKLQAFLTDSQTTLLPDWLAGQMAT 136

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
              +   L     +FL +     + +     GM  L+     +   +  F+   D   + 
Sbjct: 137 IKQNSAKLLEQGASFLGS-----LFQQIWNSGMALLNILSLFVITPVVAFYLLLDWDRMV 191

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            ++DS     +    ++I+R +   I     G   + +  GL       L G+   + +G
Sbjct: 192 DRVDSWIPRDYVEVVRQIARDMNASIAGFVRGQGSLCVILGLYYAIGLTLVGLNFGLLIG 251

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           +   +++ IP    +    +++ + +     +      +        F+    L+P LVG
Sbjct: 252 LFAGMISFIPYVGSLVGLVLALGVALVQFWPDYIWILLVLAVFFSGQFLEGNILQPKLVG 311

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLG 327
             + L  +   F L+      G +G
Sbjct: 312 RSVGLHPVWLMFALLAFGALFGFVG 336


>gi|315149437|gb|EFT93453.1| conserved hypothetical protein [Enterococcus faecalis TX0012]
          Length = 404

 Score = 87.6 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/334 (16%), Positives = 113/334 (33%), Gaps = 7/334 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F    FAPVL A  + +   P+ +  + K +    +  ++  + ++   ++ LL +    
Sbjct: 63  FFSTLFAPVLVAGFLYYLLNPVVN-LLMKTKMKRIYAVLLVFLLLIIALVLILLTIIPKL 121

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++  L S +    +        ++++P            L+       +S   +    
Sbjct: 122 ADQLASLASSMPDFFKQVETWIYEIAELPIFKQID------LTSYIEKMDISYANIIQQF 175

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +               + ++     LF+  +DG  +   +              +  
Sbjct: 176 LSSLSSSLGSIVSTVASTTIVLVTAPFILFYMLKDGDKLVPAIQRFLPEKRKDDIVDLLG 235

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + + + S   G  I  +  G      Y L GV      GVI     +IP   P    A 
Sbjct: 236 QLNQTLSSYISGQAIECLFVGTFTIIGYSLLGVHYAFLFGVIAGFTNLIPYLGPYLGLAP 295

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + I      A    L   +   +    + P ++G  +K+  L     L+      GL
Sbjct: 296 AVLVTIFNEPVKAALCCLVVLVVQQLDGNIIYPNVIGKSLKIHPLTIILILLVAGNLAGL 355

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           LG+F+G    A+   I    I  +K  + +  +N
Sbjct: 356 LGIFLGVPFYAICRTIIYYVIDMVKAGRSEKVTN 389


>gi|282854475|ref|ZP_06263812.1| putative membrane protein [Propionibacterium acnes J139]
 gi|282583928|gb|EFB89308.1| putative membrane protein [Propionibacterium acnes J139]
          Length = 408

 Score = 87.6 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 61/329 (18%), Positives = 124/329 (37%), Gaps = 14/329 (4%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            PV  AL++    WP+ +   S+        + I  + ++ L       +     L+ ++
Sbjct: 86  VPVAVALMLTAAMWPLANWL-SRHHIHRGIASGICLLLLVILVGGVFTLVGAQIALQWRQ 144

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L  + V + +  +   +WL+  P     ++L T  +   ++    S+          I  
Sbjct: 145 LGDQSVASFKQAL---QWLAKSPLHTNEAQL-THLMQKAEAAMAGSQ--------GRIAS 192

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
            A+  G     +   ++  + A FFF  +G  ++++   L      A     ++     +
Sbjct: 193 TAAAAGSQIGRFGAGLVMALFATFFFVYEGDKLAEKSAVLIPREHRAAILDAAKRGWVAL 252

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLL 270
            +      I+A  +GL  G    + G    VA+G +T I+A +P  GA  +       +L
Sbjct: 253 VAYVRAAVIVAFVDGLGAGIGAAIIGSSMSVAIGALTFILAFVPIVGALTAGVVAVGVVL 312

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +    F A  + +     + I    L+PFL+G  + +  L    G+  G    G++G   
Sbjct: 313 VTLGFFKAFIMLIVFVAVMQIEGHVLQPFLLGKAVSIHPLIVLLGIAVGAIISGIVGALF 372

Query: 331 GPVLMALIAVIWKESIMAIKENKEKISSN 359
              ++A      K        N+   S +
Sbjct: 373 AIPIVAFGVAFIKALNPETPANEVPPSHD 401


>gi|30021450|ref|NP_833081.1| hypothetical protein BC3342 [Bacillus cereus ATCC 14579]
 gi|206969183|ref|ZP_03230138.1| putative membrane protein [Bacillus cereus AH1134]
 gi|218234805|ref|YP_002368060.1| hypothetical protein BCB4264_A3355 [Bacillus cereus B4264]
 gi|296503859|ref|YP_003665559.1| hypothetical protein BMB171_C3029 [Bacillus thuringiensis BMB171]
 gi|29897004|gb|AAP10282.1| hypothetical Membrane Spanning Protein [Bacillus cereus ATCC 14579]
 gi|206736224|gb|EDZ53382.1| putative membrane protein [Bacillus cereus AH1134]
 gi|218162762|gb|ACK62754.1| putative membrane protein [Bacillus cereus B4264]
 gi|296324911|gb|ADH07839.1| hypothetical protein BMB171_C3029 [Bacillus thuringiensis BMB171]
          Length = 373

 Score = 87.6 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 121/326 (37%), Gaps = 5/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + FLK  F PVL A ++ +   P + S + KK  S         + V+ LF+
Sbjct: 41  ISFVFTPFIVFLKTIFFPVLLAGVLFYILHP-FVSLLEKKGVSRIVSIASIYLIVLGLFV 99

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             ++ +      ++  L+  +           R      G         ++L+   +  +
Sbjct: 100 FLVVTVIPIIKDQIDALIDNLPYFGHEIEQAARRF----GESNLLGKIQENLNINVANMV 155

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   T  +  +    + F     +  L+ + +   LF+  +DG  +           
Sbjct: 156 KEYTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQ 215

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +I   +   I S   G  I+++  G++L   Y + G+   V L ++  I+ ++P
Sbjct: 216 RQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVP 275

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI     ++ +    +      + +   +      K + P ++G  + +  +   F 
Sbjct: 276 YVGPIIAITPALIIAFIDSPAMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFI 335

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++      G++G+ +     A++ V+
Sbjct: 336 ILTAGNLFGIMGIILAIPGYAILKVL 361


>gi|295397298|ref|ZP_06807392.1| protein of hypothetical function UPF0118 [Aerococcus viridans ATCC
           11563]
 gi|294974449|gb|EFG50182.1| protein of hypothetical function UPF0118 [Aerococcus viridans ATCC
           11563]
          Length = 406

 Score = 87.6 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 64/371 (17%), Positives = 131/371 (35%), Gaps = 28/371 (7%)

Query: 11  IMRWMIMFIILVSLYF-----LKGFFAPVLSALIIGFTSWPIYSSFISKK---------E 56
           ++   I+ +I  S        +     P++   ++ F    + +               +
Sbjct: 17  LIAVFILVVINWSYLVQTVFMIWSVIFPLILGGMVAFVLNLLMTWLEKYLYPKATNKYIK 76

Query: 57  ESSTFLAVIATVSVMCLFIVP--------LLFLFYYGMLEMKELVSKVVLANQHGIPVPR 108
            S   +A+I  + ++CL I          L       +  + E V  +         +  
Sbjct: 77  GSRRPVAIILAILIVCLVIAATVVIVVPQLASAVMTLIDVIPETVQNLTDWFNRQEALVP 136

Query: 109 WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII 168
            ++++      +  W    S   S      + + T  +  +         IF    L I+
Sbjct: 137 LVNEL--ANQVNIDWGSMFSSVASGINSLASNVATTSVSVLTTSVGAVTNIF----LGIL 190

Query: 169 FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLV 228
           F I  LF   +    + + L            + ++R+  +       GM I +I  G +
Sbjct: 191 FAIYILFSKEKLAKQVDRLLTVYVRDDIHQLIENVARVANETFAKFISGMVIESIILGTL 250

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
           +    ++  VP    LGV+  +MA+IP        AV + +L+  N   A    ++    
Sbjct: 251 VTVGLFILQVPYAAMLGVLQGVMALIPIIGAFLSGAVGVLILLALNPTYALIYLIFVLFV 310

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             +    + P +VG  I LP +   F +  G   MG+ G+ IG  ++A I  I K  +  
Sbjct: 311 QQLEGDLIYPRVVGDSIGLPSMWVLFAVTVGGGLMGIPGMLIGVPVLASIYKIIKIDVKY 370

Query: 349 IKENKEKISSN 359
            ++ +++    
Sbjct: 371 REQVRQETGEQ 381


>gi|319898869|ref|YP_004158962.1| permease protein [Bartonella clarridgeiae 73]
 gi|319402833|emb|CBI76384.1| permease protein [Bartonella clarridgeiae 73]
          Length = 385

 Score = 87.6 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/319 (14%), Positives = 107/319 (33%), Gaps = 13/319 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P ++ +++ +   PI   F  K      F  V+ T+ ++ +F+V L+ L      +++
Sbjct: 52  LFPFIAGIVLAYFLNPIVQVFE-KIGIHRVFGTVLITLFIIVIFVVALIILIPIVSGQIQ 110

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG--IDF 148
           + VS  +    +       + +         +     S P  L    +  L  +   I  
Sbjct: 111 KFVSNGLPIYVNR------IQNFFIEHNFDWVRRYFDSDPNELHTNIKALLGQSSDFITS 164

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +     + G   ++     +   +  F+   D   + + +DS          + +   + 
Sbjct: 165 LLNSLLKSGKSIVNIISLFVVTPVVTFYILLDWPHMVEAVDSWIPRSHLTTVRSLFHEMD 224

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           + +     G     +           + G+   + +G+   +++ IP    +    +SI 
Sbjct: 225 RAVAGFVRGQGTACLILAGYYAIGLTITGLNFALLIGMFVGLISFIPYIGTMIGFVLSIG 284

Query: 269 LLI----KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           +               +     I  FI    L+P LVG  + L  +   F L       G
Sbjct: 285 VAWVQFYPNYWEWIVIVMAVFFIGQFIEGYILQPKLVGSSVGLHPVWLMFALFAFGSLFG 344

Query: 325 LLGLFIGPVLMALIAVIWK 343
             G+ +     A++ V+ +
Sbjct: 345 FTGMLVAVPAAAIVGVLVR 363


>gi|229162237|ref|ZP_04290206.1| hypothetical protein bcere0009_30140 [Bacillus cereus R309803]
 gi|228621287|gb|EEK78144.1| hypothetical protein bcere0009_30140 [Bacillus cereus R309803]
          Length = 376

 Score = 87.6 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/326 (17%), Positives = 121/326 (37%), Gaps = 5/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + FLK  F PVL A ++ +   P + S + KK  S         + V+ LF+
Sbjct: 44  ISFVFTPFIVFLKTIFFPVLLAGVLFYILHP-FVSLLEKKGVSRIVSIASIYIIVLGLFV 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             ++ +      ++  L+  V           R      G         ++L+   +  +
Sbjct: 103 FLVVTVIPIIRDQIDALIKNVPYFGHEIERAARRF----GESNVLGKIQENLNIDVASIV 158

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   T  I  +    + F     +  L+ + +   LF+  +DG  +           
Sbjct: 159 KDYTVNFTKSISSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQ 218

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                K I   +   I S   G  I+++  G++L   Y + G+   V L ++  I+ ++P
Sbjct: 219 RQPAAKNILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVP 278

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P+     ++ +    +      + +   I      K + P ++G  + +  +   F 
Sbjct: 279 YVGPVIAITPALIIAFIDSPAMVLKVIIVMMIVQLAEGKFISPQVMGKKLDIHPITIIFI 338

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++      G++G+ +     A++ V+
Sbjct: 339 ILTAGNLFGIMGIILAIPGYAILKVL 364


>gi|50842045|ref|YP_055272.1| membrane spanning protein [Propionibacterium acnes KPA171202]
 gi|289425855|ref|ZP_06427609.1| conserved hypothetical protein [Propionibacterium acnes SK187]
 gi|289426791|ref|ZP_06428519.1| conserved hypothetical protein [Propionibacterium acnes J165]
 gi|295130127|ref|YP_003580790.1| hypothetical protein HMPREF0675_3618 [Propionibacterium acnes
           SK137]
 gi|50839647|gb|AAT82314.1| membrane spanning protein [Propionibacterium acnes KPA171202]
 gi|289153798|gb|EFD02505.1| conserved hypothetical protein [Propionibacterium acnes SK187]
 gi|289160117|gb|EFD08293.1| conserved hypothetical protein [Propionibacterium acnes J165]
 gi|291375147|gb|ADD99001.1| conserved hypothetical protein [Propionibacterium acnes SK137]
          Length = 408

 Score = 87.6 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 60/329 (18%), Positives = 124/329 (37%), Gaps = 14/329 (4%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            PV  AL++    WP+ +   S+        + I  + ++ L       +     L+ ++
Sbjct: 86  VPVAVALMLTAAMWPLANWL-SRHHIHRGIASGICLLLLVILVGGVFTLVGAQIALQWRQ 144

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L  + V + +  +   +WL+  P     ++L T  +   ++    S+          I  
Sbjct: 145 LGDQSVASFKQAL---QWLAKSPLHTNEAQL-THLMQKAEAAMAGSQ--------GRIAS 192

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
            A+  G     +   ++  + A FFF  +G  ++++   L      A     ++     +
Sbjct: 193 TAAAAGSQIGRFGAGLVMALFATFFFVYEGDKLAEKSAVLIPREHRAAILDAAKRGWVAL 252

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLL 270
            +      I+A  +GL  G    + G    VA+G +T I+A +P  GA  +       +L
Sbjct: 253 VAYVRAAVIVAFVDGLGAGIGAAIIGSSMSVAIGALTFILAFVPIVGALTAGVVAVGVVL 312

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +    F A  + +     + I    L+PFL+G  + +  L    G+  G    G++G   
Sbjct: 313 VTLGFFKAFIMLIVFVAVMQIEGHVLQPFLLGKAVSIHPLIVLLGIAVGAIISGIVGALF 372

Query: 331 GPVLMALIAVIWKESIMAIKENKEKISSN 359
              ++A      K        N+   + +
Sbjct: 373 AIPIVAFGVAFIKALNPETPANEVPPNHD 401


>gi|218282593|ref|ZP_03488831.1| hypothetical protein EUBIFOR_01413 [Eubacterium biforme DSM 3989]
 gi|218216464|gb|EEC90002.1| hypothetical protein EUBIFOR_01413 [Eubacterium biforme DSM 3989]
          Length = 397

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/376 (14%), Positives = 131/376 (34%), Gaps = 32/376 (8%)

Query: 1   MRETMLNPQGIMRWMIMFIILV--------SLYFLKGFFAPVLSALIIGFTSWPIYSSFI 52
           M++ ++     +   I+F  ++        S+ F+     P L  + + F          
Sbjct: 21  MKQRIIVYSASLIIAILFFTILNRFKDITRSIQFIITILFPFLLGIGLAFILNNPQKWVE 80

Query: 53  SKK--------EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
           +K         +        I  +  +   I+    +    +  +++    V   +   I
Sbjct: 81  NKLLANTPMQNKHKRILSTGIVFILTIGFLILFFSIIIPNTIDSVRQFSKNVASYSDTLI 140

Query: 105 -PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY 163
                +   +       E    +              + +   + IP+ AS +   F+  
Sbjct: 141 GYTKDFAYKLNISEKQVEQLLINFD--------ITKKITSVLTESIPKIAS-YSYSFVKG 191

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF----LGMT 219
            ++II  +++ F+   D  ++ + +  L   LF   +     +     ++ F    +G  
Sbjct: 192 FINIILALVSAFYILLDRETLVKGIKKLNYSLFDKNFANYLTLWTNDAKTVFEQYIVGNI 251

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNA 278
           I +   G++      +  +P    + +I  +  +IP  G  +    V I L +  + F+A
Sbjct: 252 IDSFIVGVICYFGALVLKLPYASMIALIIGVTNVIPVFGPFLGAIPVIIILCLI-DPFSA 310

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
               ++  I        ++P ++G  + +      F +  G    G++G+F+G  + ALI
Sbjct: 311 LIFTIFIFILQQCDGNIIKPIVLGDKLGMSGFWILFSVTVGGALFGVVGMFLGVPIFALI 370

Query: 339 AVIWKESIMAIKENKE 354
                + I     NK+
Sbjct: 371 YAGVHDYIQVRLRNKK 386


>gi|30263317|ref|NP_845694.1| hypothetical protein BA_3410 [Bacillus anthracis str. Ames]
 gi|49186166|ref|YP_029418.1| hypothetical protein BAS3161 [Bacillus anthracis str. Sterne]
 gi|49479012|ref|YP_037468.1| permease [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|50196948|ref|YP_052638.1| hypothetical protein GBAA_3410 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|118478647|ref|YP_895798.1| permease [Bacillus thuringiensis str. Al Hakam]
 gi|228915962|ref|ZP_04079537.1| hypothetical protein bthur0012_31800 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228928408|ref|ZP_04091449.1| hypothetical protein bthur0010_31070 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228934640|ref|ZP_04097474.1| hypothetical protein bthur0009_30950 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228946985|ref|ZP_04109282.1| hypothetical protein bthur0007_31160 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229092314|ref|ZP_04223486.1| hypothetical protein bcere0021_30950 [Bacillus cereus Rock3-42]
 gi|229122890|ref|ZP_04252098.1| hypothetical protein bcere0016_31810 [Bacillus cereus 95/8201]
 gi|229185596|ref|ZP_04312775.1| hypothetical protein bcere0004_31480 [Bacillus cereus BGSC 6E1]
 gi|30257951|gb|AAP27180.1| putative membrane protein [Bacillus anthracis str. Ames]
 gi|49180093|gb|AAT55469.1| membrane protein, putative [Bacillus anthracis str. Sterne]
 gi|49330568|gb|AAT61214.1| conserved hypothetical protein, possible permease [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|50083010|gb|AAT70146.1| putative membrane protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|118417872|gb|ABK86291.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|228597826|gb|EEK55467.1| hypothetical protein bcere0004_31480 [Bacillus cereus BGSC 6E1]
 gi|228660474|gb|EEL16106.1| hypothetical protein bcere0016_31810 [Bacillus cereus 95/8201]
 gi|228691016|gb|EEL44783.1| hypothetical protein bcere0021_30950 [Bacillus cereus Rock3-42]
 gi|228812717|gb|EEM59041.1| hypothetical protein bthur0007_31160 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228825033|gb|EEM70831.1| hypothetical protein bthur0009_30950 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228831455|gb|EEM77051.1| hypothetical protein bthur0010_31070 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228843780|gb|EEM88854.1| hypothetical protein bthur0012_31800 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 376

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 121/326 (37%), Gaps = 5/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + FLK  F PVL A ++ +   P + S + KK  S         + V+ LF+
Sbjct: 44  ISFVFTPFIVFLKTIFFPVLLAGVLFYILHP-FVSLLEKKGVSRIVSIASIYLIVIGLFV 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +L +      ++  L+  +           R      G         ++L+   +  +
Sbjct: 103 FLVLTVIPIIKDQIDALIDNLPYFGHEIERAARRF----GESNLLGKIQENLNIDVASMV 158

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   T  +  +    + F     +  L+ + +   LF+  +DG  +           
Sbjct: 159 KDYTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQ 218

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +I   +   I S   G  I+++  G++L   Y + G+   V L ++  I+ ++P
Sbjct: 219 RQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVP 278

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI     ++ +    +      + +   +      K + P ++G  + +  +   F 
Sbjct: 279 YVGPIIAITPALIIAFIDSPGMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFI 338

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++      G++G+ +     A++ V+
Sbjct: 339 ILTAGNLFGIMGIILAIPGYAILKVL 364


>gi|308174441|ref|YP_003921146.1| permease [Bacillus amyloliquefaciens DSM 7]
 gi|307607305|emb|CBI43676.1| putative permease [Bacillus amyloliquefaciens DSM 7]
          Length = 353

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 112/318 (35%), Gaps = 15/318 (4%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
             +K  F P+  A+ I +   PI      K            T+S++ ++ +    + + 
Sbjct: 37  LVMKSLFIPIFIAVFIAYLLLPITDWLHGKGMPR--------TLSLLLIYFLFFGGIGWG 88

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
               +  L+ ++   ++    +    + +        L       P  +    +  ++  
Sbjct: 89  VYKGVPVLIEQLQDLSESIPGLAENYNSM-----LRHLHNHTDHWPDGMHHRMDKMIQQT 143

Query: 145 GIDFIPRFASRFGMI--FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                    S    I   LDY L    +   +F+  +D   + + +  L    +     +
Sbjct: 144 ETFLAGTIESTIRSIRFVLDYILIAATIPFLVFYMVKDIDVMKKTVWYLTPKSWRKRGSE 203

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             R V   +     G  ++    G + G ++WL G+P  + LG+   I  +IP   P   
Sbjct: 204 FLRDVDDSLGDYIRGQLLVCFLLGFIAGVSFWLFGLPYPLILGLAIGITNVIPYFGPFIG 263

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ L +  +      + +   I  FI    L P +VG  +++  +     L+ G   
Sbjct: 264 AVPALLLSLAISSKAVIIVIVTIFILQFIEGNILSPLIVGRSLRMHPVVIMLALLAGGEL 323

Query: 323 MGLLGLFIGPVLMALIAV 340
            G+ G+ +     A++ V
Sbjct: 324 AGIPGMILAVPAAAVLKV 341


>gi|221635410|ref|YP_002523286.1| hypothetical protein trd_A0004 [Thermomicrobium roseum DSM 5159]
 gi|221157285|gb|ACM06403.1| protein of unknown function [Thermomicrobium roseum DSM 5159]
          Length = 487

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/346 (14%), Positives = 119/346 (34%), Gaps = 25/346 (7%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
            +L  L     P + A +  +   P+      +       + ++  + ++ L ++  L L
Sbjct: 26  WALLHLAHILTPFIVAAVFAYLVHPLVDWLERRLRLPRIAVVLVLYLVLIGLLVLGGLLL 85

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
                 + + L + V    +          ++  G  A +          + + L+E F 
Sbjct: 86  APSLAQQAQALATTVPRVIETIEQRLARAPELRFGELAIDTRGLLDRLDAAAQSLAERFS 145

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
           +      +           ++  +      +  F+    G ++  +L +L          
Sbjct: 146 REAVPLVLA---------TVEALIKSFVFFLVSFYGLLQGRTLVARLRALAPRRHQKTVS 196

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +I   V    R+      ++          A  +  V   +AL + T ++ +IP   P  
Sbjct: 197 RILGQVDATFRAYIRAQLVLFAIMATATYIALTILEVKYRLALAIATGLLELIPFIGP-- 254

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAI------------ELFIVDKTLRPFLVGGPIKLPF 309
           +TA +I   +   +   T  F W ++               + D  + P LVG  ++L  
Sbjct: 255 WTAGAI--AVSVALTQGTAPFGWSSLQLAVVVALVYLVLRLLEDHFVIPQLVGHFVRLHP 312

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +   FG++ G    G+LGL +   ++A + ++    +  ++    +
Sbjct: 313 VVVLFGILAGASVAGILGLLLAVPVLAALKIVVLTVLEELRHPPPR 358


>gi|167038699|ref|YP_001661684.1| hypothetical protein Teth514_0024 [Thermoanaerobacter sp. X514]
 gi|307723242|ref|YP_003902993.1| sporulation integral membrane protein YtvI [Thermoanaerobacter sp.
           X513]
 gi|166852939|gb|ABY91348.1| protein of unknown function UPF0118 [Thermoanaerobacter sp. X514]
 gi|307580303|gb|ADN53702.1| sporulation integral membrane protein YtvI [Thermoanaerobacter sp.
           X513]
          Length = 355

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/350 (15%), Positives = 123/350 (35%), Gaps = 7/350 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R   +  + ++   +  I  + ++ +  F  P + AL++     P  +    K +    
Sbjct: 6   LRYGDIIKKTLLIVAVFIIFYLIIFKIIPFLMPFVVALLLAVIIDPGVNFLEKKLKVPRG 65

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVS-KVVLANQHGIPVPRWLSDIPGGMWA 119
             + I  + ++ +    +       + E+  L       AN     +   +  I      
Sbjct: 66  LASFILLLILIGVIGSLIAISITQLIYELSSLAEISTNYANTINDAILNLVDRI---RTY 122

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                 +++      + S     +     +  +   F     ++    +  ++A FF  +
Sbjct: 123 YISLPPNITSLIESNMHSILNYISLFAKNLATWLLNFATKLPNFFFMTLITLVATFFISK 182

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D   I   +       +  + K I   + K        +  I +   L +     + G  
Sbjct: 183 DKNLILDFIKRQIPSHWAQHAKNIQIDLLKTFFGYLRAVAAIMLITFLEVSIGLVIIGFD 242

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLR 297
               LG+   I+  +P  G+       ++Y ++I  N      L +   + + +V + + 
Sbjct: 243 YPFLLGLFVTIVDALPVLGSGSVMIPWALYNIIIIKNYMVGIYLLILYILVV-VVRQMIE 301

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           P +VG  I L  L T   +  GV+  G LGL IGPV + +   + +  I+
Sbjct: 302 PKIVGQSIGLHPLVTLLSMFIGVKLFGALGLIIGPVFVVVFKALQRAEII 351


>gi|72535366|gb|AAT67989.2| permease protein [Halobacterium sp. AS7092]
          Length = 322

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 113/299 (37%), Gaps = 29/299 (9%)

Query: 45  WPIYSSFISK--KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH 102
            P+    + +   E +    A +           P++   Y+ + ++ +           
Sbjct: 1   MPVQGWLVRRGLSEWTGALAATVVGFVAAIAVFAPIVVALYFRIEQVLDA---------- 50

Query: 103 GIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD 162
                  +  +P  +  + L   H              ++   +D++   A+ F +    
Sbjct: 51  -------VEALPRELSVTVLEATHTVEAGE--------IQALAVDYLSDAATSFALALPV 95

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
             +     I+ +F     G    +   +   H +      +++   + + + ++     +
Sbjct: 96  LGIKFALFIVLMFGLLLKGDEAGRAAVAPIPHDYRDVVYALTKRARETLYAIYVLQVATS 155

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCL 281
           I   LV    + L G  + + L ++ A++  +P  G  +    +++Y +  G++  AT +
Sbjct: 156 IATLLVAYPLFRLLGYEAALTLSIMAAVLQFVPIIGPSMLIAPITLYHVAVGDLVAATLI 215

Query: 282 FLWGAIELF-IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
            + G + +  + D  +RP L      LP    F G  GG+ T+G +G+ +GP+++A+  
Sbjct: 216 GVLGLVFVAWLPDIAVRPRLSRRSAGLPGSLYFVGFTGGLFTLGPIGIVVGPLIVAVFV 274


>gi|311278603|ref|YP_003940834.1| hypothetical protein Entcl_1284 [Enterobacter cloacae SCF1]
 gi|308747798|gb|ADO47550.1| protein of unknown function UPF0118 [Enterobacter cloacae SCF1]
          Length = 349

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/347 (15%), Positives = 116/347 (33%), Gaps = 14/347 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +P+ I   +I+      L+F  G  AP+L A+++ +   WP              
Sbjct: 5   RRRFSDPEAIALLVILLAGFGILFFFSGLLAPLLVAIVLAYLLEWP-TIRLERIGCSRRW 63

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             +++  + V  L ++  + +       +  +     + N+            P  M A 
Sbjct: 64  ATSIVLILFVGILLLMAFVVMPVAWQQGINLIRDMPGMLNKLSDFAATLPRRYPALMDAG 123

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +     +    +  + ++ +K +    +           L   + ++ + + +FF  +D
Sbjct: 124 IIDAMADNMRNRMLTMGDSVVKYSLASLV---------GLLTLAVYLVLVPLMVFFLVKD 174

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +          ++ + + + I +   G  +  +  G+     + L G+  
Sbjct: 175 KEQMLNAVRRILPRNRGLAG-QVWKEMNQQITNYIRGKVLEMVVVGVATWIGFLLFGLNY 233

Query: 241 HVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V+  +  +IP  GA +    V  + L   G       LF    I   +    L P
Sbjct: 234 SLLLAVLVGLSVLIPYIGAFVVTIPVVCVALFQFGLGTEFWSLFAVYLIIQGLDGNLLVP 293

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L    + L  L     +V      G  G+F    L  LI  +    
Sbjct: 294 VLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVHAW 340


>gi|227517666|ref|ZP_03947715.1| possible permease [Enterococcus faecalis TX0104]
 gi|227074875|gb|EEI12838.1| possible permease [Enterococcus faecalis TX0104]
          Length = 404

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/334 (16%), Positives = 114/334 (34%), Gaps = 7/334 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F    FAPVL A  + +   P+ +  + K +    +  ++  + ++   ++ LL +    
Sbjct: 63  FFSTLFAPVLVAGFLYYLLNPVVN-LLMKTKMKRIYAVLLVFLLLIIALVLILLTIIPKL 121

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++  L S +    +        ++++P            L+       +S   +    
Sbjct: 122 ADQLASLASSMPDFFKQVETWIYEIAELPIFKQID------LTSYIEKMDISYANIIQQF 175

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +               + ++     LF+  +DG  +   +              +  
Sbjct: 176 LSSLSSSLGSIVSTVASTTIVLVTAPFILFYMLKDGDKLVPAIQRFLPEKRKDDIVDLLG 235

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + + + S   G  I  +  G      Y L GV      GVI     +IP   P    A 
Sbjct: 236 QLNQTLSSYISGQAIECLFVGTFTIIGYSLLGVRYAFLFGVIAGFTNLIPYLGPYLGLAP 295

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + I      AT   L   +   +    + P ++G  +K+  L     L+      GL
Sbjct: 296 AVLVTIFNEPVKATLCCLVVLVVQQLDGNIIYPNVIGKSLKIHPLTIILILLVAGNLAGL 355

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           LG+F+G    A+   I    I  +K  + +  +N
Sbjct: 356 LGIFLGVPFYAICRTIIYYVIDMVKAGRSEKVTN 389


>gi|330993492|ref|ZP_08317427.1| UPF0118 membrane protein yrrI [Gluconacetobacter sp. SXCC-1]
 gi|329759522|gb|EGG76031.1| UPF0118 membrane protein yrrI [Gluconacetobacter sp. SXCC-1]
          Length = 374

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/340 (13%), Positives = 112/340 (32%), Gaps = 10/340 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            + + I+++ ++ +      + +A ++      +      +              +V+ +
Sbjct: 43  TLAITIVVMLIWVVGDVLMVIFAATLVAVILHNLAGIVERRTHMPYWLA----LGAVVVV 98

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            I  L  L +    E+ E       A +    +     ++  GM  S      L +  + 
Sbjct: 99  LIGALTGLIWSSGPEISE------QAVKLRTALSEQAHNLRNGMGDSSTGRMILDNLPTT 152

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
              +E     +G   +    + F         ++  ++IA  +F          +  +  
Sbjct: 153 LGGNEATSGNSGFGSLAGSMTGFVSSAFGAAGTLAVILIAGLYFAISPELYVNGMLRMVP 212

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           H +    +++     + + +   G  +     GL+     W  GVP  +ALGV+  +   
Sbjct: 213 HPYRMTARELLLTAGRTLWAWTAGQALDMTVVGLLSFIGLWCIGVPLALALGVVAGLANF 272

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP          ++ + +         +    A   F     + P +    +++P   T 
Sbjct: 273 IPYIGAFVGAVPAVLIALSQGTREGFMVMGLYAAIQFFEGNVMAPLIQRHAVQMPPGLTI 332

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                    +G+ GL +   L A +  +   +   +KE++
Sbjct: 333 LSQTIFGTILGIPGLILASPLTAALLAVADRATPELKEDE 372


>gi|329935266|ref|ZP_08285232.1| integral membrane protein [Streptomyces griseoaurantiacus M045]
 gi|329305089|gb|EGG48948.1| integral membrane protein [Streptomyces griseoaurantiacus M045]
          Length = 521

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/309 (14%), Positives = 106/309 (34%), Gaps = 23/309 (7%)

Query: 17  MFIILVSLYFLKGFFAPV-------LSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           + ++  +++ L    + V       ++AL+I     P  +    ++      LA   T  
Sbjct: 173 LLVLAGTVWVLMRVISAVRLVVLAFVAALLITAILQPTVARL--RRHGVPRGLATALTAV 230

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMWASELWTKHLS 128
           +  +    +  + ++   ++ E +  +    Q GI   R WL + P        +     
Sbjct: 231 LGFVV---MGLIGWFVTWQVMENIDNLSDQIQDGIDDLRRWLLNSP--------FHVTDK 279

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              ++       +  N              + ++    I+  + +  F   DG  I +  
Sbjct: 280 QINAIAKNLREAIGANTDQITSAGLEGV-TVIVEGLTGILLTVFSTLFLLYDGRRIWEWS 338

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L                 + + +   G  I+A+ + + +G   +   VP  V L V  
Sbjct: 339 LKLVPAAARPGVAGAGPRAWRTLTAYVRGTVIVALIDAIFIGLGIYFLEVPMAVPLAVFI 398

Query: 249 AIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A IP    +   A+++ + L+   +F A    +       I    L+PF++G  +++
Sbjct: 399 FLFAFIPLVGAVVSGALAVVVALVTQGVFAAVMTLVVVLAVQQIEGHILQPFILGRAVRV 458

Query: 308 PFLPTFFGL 316
             L     +
Sbjct: 459 HPLAVVLSV 467


>gi|160915476|ref|ZP_02077687.1| hypothetical protein EUBDOL_01484 [Eubacterium dolichum DSM 3991]
 gi|158432596|gb|EDP10885.1| hypothetical protein EUBDOL_01484 [Eubacterium dolichum DSM 3991]
          Length = 390

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 60/337 (17%), Positives = 117/337 (34%), Gaps = 22/337 (6%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEES--------STFLAVIATVSVMCLFIVPLLFLF 82
             P +    I F        F +K                A+++ V  + +    L  L 
Sbjct: 43  LMPFILGFAIAFILNGPMMFFEAKLFGKLRCSKQVKRNLSALLSLVLFIAIVCFLLALLI 102

Query: 83  YYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
              +  +  LV      A    +    ++ +        E+  K +S    +  L+E   
Sbjct: 103 PQLVESIASLVKSFPGYAADFQVFAIDFMKE---HDINVEIINKFISDYNIVGKLTEFV- 158

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            T+ +  + +   + G   L+  L     II+  +   D   + +    L   +FP    
Sbjct: 159 -TSALPQMAKLTYQLGSTLLNVLLG----IISGLYMMMDKERLLRYFKKLNYAIFPKNVA 213

Query: 202 KISRIV----PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
           + +  +     ++  +  +G  I ++  G++      L G P  + L V+  +  MIP  
Sbjct: 214 EYTHRLMLSSSQIFNNFIIGKAIDSLIIGILCYVGSILLGFPYAILLSVVVGVTNMIPVF 273

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P       I LL   +   A    L+  +        L P ++G  + LP +   F +V
Sbjct: 274 GPFIGAIPGIVLLFIIHPITAVYYALFILVLQQFDGNILGPLILGDKLGLPSIGILFSVV 333

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            G     ++G+FIG    A+I +  +E      E + 
Sbjct: 334 IGGGLFNVVGMFIGVPCFAVIYMAVREWTHYRLEKRH 370


>gi|326692552|ref|ZP_08229557.1| transport protein [Leuconostoc argentinum KCTC 3773]
          Length = 382

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 115/336 (34%), Gaps = 14/336 (4%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
           AP+L A ++ +   P+                 +  ++++ L    +  L      ++  
Sbjct: 52  APILIAGVLYYLLSPLVKLLTRYTHIPRALAIGLILIAIIGLAAGLITMLVVVLRFQVMT 111

Query: 92  LV-SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            + +     +     +               L T +    Q++   S+ +L T       
Sbjct: 112 FIDNWPSYWHTSQNFINETFKSSQFKPVREFLNTTNTGINQNVIDWSKKYLTTGVAGI-- 169

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              S          ++ +     L++   DG   S  +            +++   + K 
Sbjct: 170 ---SSLASTLTSVGITAVSTPFILYYMLLDGHKFSGFVAEKFPPKAQHSLRELLTDISKQ 226

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
           I     G   + +   ++ G  Y + G+P  + L ++     MIP  G+ ++   V I  
Sbjct: 227 IAKYIRGQLGVGLAVMIMFGIGYTVIGLPYGILLAMMAGFFNMIPYVGSILAQVPVFIVA 286

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           LI G       + +   IE  I    + P ++G  + +  +     L+ G    G+LG+ 
Sbjct: 287 LIAGGPKLLILVIIVLVIEQPIEGHVIAPKILGDALAIHPVTVIVVLLTGAHIFGVLGVI 346

Query: 330 IGPVLMALIAVI-------WKESIMAIKENKEKISS 358
           +G    A++ V+       W+ +    KE  E++  
Sbjct: 347 LGVPTYAVLKVLVTRIYTWWRSNSALFKEGTEEVEQ 382


>gi|206974666|ref|ZP_03235582.1| YubA [Bacillus cereus H3081.97]
 gi|206747309|gb|EDZ58700.1| YubA [Bacillus cereus H3081.97]
          Length = 373

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 121/326 (37%), Gaps = 5/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + FLK  F PVL A ++ +   P + S + KK  S         + V+ LF+
Sbjct: 41  ISFVFTPFIVFLKTIFFPVLLAGVLFYILHP-FVSLLEKKGVSRIVSIASIYLIVIGLFV 99

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +L +      ++  L+  +           R      G         ++L+   +  +
Sbjct: 100 FLVLTVIPIIKDQIDALIDNLPYFGHEIERAARRF----GESNLLGKIQENLNIDVASMV 155

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   T  +  +    + F     +  L+ + +   LF+  +DG  +           
Sbjct: 156 KDYTVDFTKSLSSVTGNVTGFLSTITEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQ 215

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +I   +   I S   G  I+++  G++L   Y + G+   V L ++  I+ ++P
Sbjct: 216 RRPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVP 275

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI     ++ +    +      + +   +      K + P ++G  + +  +   F 
Sbjct: 276 YVGPIIAITPALIIAFIDSPAMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFI 335

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++      G++G+ +     A++ V+
Sbjct: 336 ILTAGNLFGIMGIILAIPGYAILKVL 361


>gi|325568894|ref|ZP_08145187.1| protein of hypothetical function UPF0118 [Enterococcus
           casseliflavus ATCC 12755]
 gi|325157932|gb|EGC70088.1| protein of hypothetical function UPF0118 [Enterococcus
           casseliflavus ATCC 12755]
          Length = 447

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 56/341 (16%), Positives = 113/341 (33%), Gaps = 7/341 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+       L     P L  LI+ +   P+     SKK   S  +A I  + ++ +  
Sbjct: 83  ISFLFTPFSAILTAIIPPFLFGLILYYLFNPVVDKLESKKIPRSVSIAGIYLLILLLIVF 142

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
                           + S   L +        +L + P     +++     +   ++  
Sbjct: 143 AGFQLYPILEQQTTDLINSLPSLVSDFEKNATAFLENTPFQDEMAQITDTLQNITSNIMS 202

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
               + +T          S          +++    I  FF  R+       + SL    
Sbjct: 203 FIGDYWQTGAAGL-----SSLFSTISTLFIALFTGPIIAFFLLRNPNKFYFSVLSLVPPR 257

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + +I +I    + +   G  I ++  G +    + L G+     L +   ++ +IP
Sbjct: 258 FRKDFNEIVKISDIQVGAFLKGQIISSLILGAIYWVVFLLIGLEYASILAIAAGLLCIIP 317

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G  I F                  L  W A++L   D  + P ++G  +K+  +    
Sbjct: 318 YIGPFIVFFPGLFIAAQDSTGMLVKFLIAWFAVQLLHGDLVV-PRVMGDRLKIHPITILV 376

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            L+     MG++G+  G  +  L+ V+        K+   +
Sbjct: 377 VLLVMGDLMGIVGVIFGIPIYCLLKVLVVYVFRKFKQRYNR 417


>gi|260662858|ref|ZP_05863752.1| permease [Lactobacillus fermentum 28-3-CHN]
 gi|260552939|gb|EEX25938.1| permease [Lactobacillus fermentum 28-3-CHN]
          Length = 354

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/328 (14%), Positives = 117/328 (35%), Gaps = 10/328 (3%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS----KKEESSTFLAVIATVSVMCL 73
           F+    L F+     P++ +L + +   P++   +     K        +++  + ++ +
Sbjct: 15  FVFTPLLVFVSVVITPLIISLFLYYMLKPLFRLLMKIKVYKWHMKRGIASLVVVIGLVLI 74

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               +  L    + E+ +++  +  A +    + + +S+ P             ++   +
Sbjct: 75  VAGGISALIPSVLNELNQVIHWLPQAAKESQKMIQEISEHPWVRKL-----HLSTYYSQI 129

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                 +++           +  G I     ++I    + LF+ ++DG  +   +  L  
Sbjct: 130 NDQVSKYVRQIVTGLTSSAGTIIGTITSTVIVAITV-PVMLFYMFKDGNRLVPSVQKLFP 188

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   ++ R + + + S   G  I  +   +     Y + G P  V LGV+  I  M
Sbjct: 189 ENSRDEVGELLRKMSQTLSSYISGQAIECLFVAIATSIGYLIIGQPLAVVLGVVAGIANM 248

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P      S+ + I         + +   I   I    + P ++G  +++  L   
Sbjct: 249 IPYVGPYIGITPSLMVSIAVAPEKIIWVIVVVVIVQQIDGNIIYPNIIGKTLQIHPLTII 308

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             L+      G+ G+ +     A++  +
Sbjct: 309 MLLLAAGNIAGIPGMILCIPCYAVVKTV 336


>gi|222479132|ref|YP_002565369.1| protein of unknown function UPF0118 [Halorubrum lacusprofundi ATCC
           49239]
 gi|222452034|gb|ACM56299.1| protein of unknown function UPF0118 [Halorubrum lacusprofundi ATCC
           49239]
          Length = 368

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 57/358 (15%), Positives = 120/358 (33%), Gaps = 41/358 (11%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   + ++    + +  +  +    F AP+  A+ + +++  ++      +  +      
Sbjct: 1   MDEKRFVIALFGLAVGALVGFIAYRFVAPLTVAVFLYYSTRRLFHRLERFRLPARVRA-- 58

Query: 65  IATVSVMCLFIVPLLFLFYY----GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              +S + L  VPL+ L  Y     ++E +  + +  +A   G              W  
Sbjct: 59  ---MSALSLIAVPLIGLLSYTMLLLVIEARRFIEQYPVAETVGA----------ENSWVG 105

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +L          +    E+      I+F    A+          LS++  I+  ++   D
Sbjct: 106 DLAELSNPTFDGIMQAYESGQLDPLINFASEQATLLASTLSGLVLSLLITIVVTYYLLLD 165

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW------ 234
           G    + L +  +       ++    V   + +   G  +  I   ++   AY       
Sbjct: 166 GSKFHEWLLTFDDDAV---VREYLEAVDAELEAVLYGNLLNVIAISIIAVVAYTGYNVIA 222

Query: 235 --LAGVPSHVALGVITAIMAMIPGG---------APISFTAVSIYLLIKGNIFNATCLFL 283
             L  VP     G +T + ++IP           A ++    ++   I   ++ A  L L
Sbjct: 223 PELVEVPYPALAGALTGVASLIPVIGMKIVYLPLAAVTAVPAALGDEISALVYVAGFLVL 282

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
              +   I D  LRP+  G              + G    G  GLF+ P+++ L    
Sbjct: 283 AAIVVDTIPDIVLRPYFSGKTT--HVGLLMLAYIFGPVVFGFHGLFLAPIVLVLALTF 338


>gi|199596913|ref|ZP_03210346.1| Predicted permease [Lactobacillus rhamnosus HN001]
 gi|229553740|ref|ZP_04442465.1| permease [Lactobacillus rhamnosus LMS2-1]
 gi|258507710|ref|YP_003170461.1| membrane protein [Lactobacillus rhamnosus GG]
 gi|258538898|ref|YP_003173397.1| membrane protein [Lactobacillus rhamnosus Lc 705]
 gi|199592046|gb|EDZ00120.1| Predicted permease [Lactobacillus rhamnosus HN001]
 gi|229312911|gb|EEN78884.1| permease [Lactobacillus rhamnosus LMS2-1]
 gi|257147637|emb|CAR86610.1| Conserved membrane protein [Lactobacillus rhamnosus GG]
 gi|257150574|emb|CAR89546.1| Conserved membrane protein [Lactobacillus rhamnosus Lc 705]
 gi|259649057|dbj|BAI41219.1| putative transporter protein [Lactobacillus rhamnosus GG]
          Length = 388

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/323 (15%), Positives = 119/323 (36%), Gaps = 12/323 (3%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            P + A I+ + + PI +    K          +  + ++ L +  LL        ++  
Sbjct: 53  PPFIFAGILFYLTVPIINRLE-KAGLHRGLAIGLLFIVLISLLVWGLLRFIPAVSNQITS 111

Query: 92  LVSKVVLANQHGIPVPRWLSDI--PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           +V     A Q    + +WL D+     + +     +  +  Q+     +    T  I  +
Sbjct: 112 IVD---SAPQIFTEIGKWLDDLNDKQNILSQHDLNEIANEVQTFFTGKQGAFVTGTISQL 168

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                  G    +  ++I    I LFF  +DG   +  +  +         K++   + +
Sbjct: 169 QNLIGIVG----NVVVTISTAPIILFFMLKDGDKFTPMILQIVPTKLRRSVKQMLHEMNE 224

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIY 268
            + S   G   +A+   ++    Y + G+   +  G++   + +IP  G+ ++     I 
Sbjct: 225 KVGSYVQGQITVALCVAVMFMIGYSVIGLRYGLIFGLLACPLNLIPYFGSALAMIPPLIM 284

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
             +  +      + +   IE  I  + + P ++G  ++L  +     L+      GL+G+
Sbjct: 285 GALT-SPRMILAVIVVFFIEWLIETQLISPLVMGSKLELHPITIVVVLLTAGNLFGLVGV 343

Query: 329 FIGPVLMALIAVIWKESIMAIKE 351
            +G    A++ ++        ++
Sbjct: 344 ILGIPGFAVLKIVVTRFFSWYQQ 366


>gi|294815484|ref|ZP_06774127.1| Putative membrane protein [Streptomyces clavuligerus ATCC 27064]
 gi|294328083|gb|EFG09726.1| Putative membrane protein [Streptomyces clavuligerus ATCC 27064]
          Length = 471

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/320 (13%), Positives = 101/320 (31%), Gaps = 14/320 (4%)

Query: 37  ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV 96
           A  I     P  +   ++          +    ++   +  ++ L      ++  +V   
Sbjct: 121 AFFIALAIEPAVARMAAR-GVRRGLATFLVFFGLLSAAVGFVVMLGSMLADQIVTMVEDF 179

Query: 97  VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
               Q+   V  W++      + +EL    +          +++++ +    +   A+  
Sbjct: 180 P---QYLDSVISWINQ----TFETELSRVEVQDSVLRSDWLQSYVEDSATGVLDVSATVL 232

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
           G          +F     F+F  DG  + + + S+      A   +   I          
Sbjct: 233 G-GLFRLLTIFLFS----FYFAADGPRLRRTICSVLPPAKQAEVLRAWEIAVDKTGGYIY 287

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNI 275
              ++A+  G        + GVP   AL V   +++  IP        A+ + +    N 
Sbjct: 288 SRGLMALISGGAHYVLLEVLGVPYAPALAVWVGLVSQFIPTIGTYLAGALPMLIAFTVNP 347

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
           + A  +  +  +     +  L+P L    + +     F  ++ G   MG +G  I    +
Sbjct: 348 WYAVWVLGFVVVYQQFENYVLQPKLTARTVDIHPAVAFGSVIAGTALMGAVGALIAIPAV 407

Query: 336 ALIAVIWKESIMAIKENKEK 355
           A +       +       + 
Sbjct: 408 ATLQAFLGAYVRRYDVTDDP 427


>gi|317129668|ref|YP_004095950.1| hypothetical protein Bcell_2969 [Bacillus cellulosilyticus DSM
           2522]
 gi|315474616|gb|ADU31219.1| protein of unknown function UPF0118 [Bacillus cellulosilyticus DSM
           2522]
          Length = 373

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/333 (16%), Positives = 127/333 (38%), Gaps = 5/333 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F++  F P L A ++ +   PI     ++K      +A++    ++   +  L+FL    
Sbjct: 36  FVQTVFIPFLIAGVLFYLLRPILIFLHNRKV--PKVIAILIIYVLLIGVLTGLVFLIGPA 93

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +    +L++ +         V + + D+    W ++         +S+       L  + 
Sbjct: 94  LQ--AQLMNLIDNMPFLVNEVRKVIFDLSEIEWLAQFQDFESFSIESISENIAGVL-MDT 150

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            +FI    + F     +   +II +   LF+  +DG     Q+            K+I  
Sbjct: 151 FNFISMNIASFLGALTNTLFTIILIPFMLFYILKDGHKAPNQVLRFFPEKQQIEGKRILS 210

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K + S   G  I+++  G+++  +Y + G+   + L +I     +IP   P      
Sbjct: 211 DMDKALSSFIQGQIIVSLCVGILMFISYTIIGLEYTLILALIAMATNLIPFIGPWIGAVP 270

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A  + +   +   I    + P ++G  + +  L     ++   R  G 
Sbjct: 271 AVIVALIASPMTALWVIVAIVVVQQIESNLIAPQVMGRKLAIHPLTIIILILVAGRFAGF 330

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +G  I     A+  V+   +   +K  K+ +  
Sbjct: 331 IGFLIAVPTYAVTKVVVSHTYRLLKLRKQNLEE 363


>gi|18977957|ref|NP_579314.1| hypothetical protein PF1585 [Pyrococcus furiosus DSM 3638]
 gi|18893731|gb|AAL81709.1| hypothetical protein PF1585 [Pyrococcus furiosus DSM 3638]
          Length = 341

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/358 (13%), Positives = 126/358 (35%), Gaps = 28/358 (7%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     +++ I+ +    +K    P++  L   + ++P       K  E    L V
Sbjct: 1   MEREKIFWIAVVLLILFLVWETIKYLITPIVFGLAGTYIAYPFQRKLSKKVGEKKATLIV 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +A V+V+    +  + L+    L+   L          G+ +P +L  +           
Sbjct: 61  LAIVAVLSTLFLIGVTLWITDTLKNLYLYLDRFFIWLSGLNMPSFLGALFDA-------- 112

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                           L  +  + +     ++ +      L +I  +   +    +   +
Sbjct: 113 ----------------LAQSFPEKLRSILLQYTLSLPKLALQLIVFLAVFYSSLLNADFL 156

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP---SH 241
           S+++ +L         KK+       + +        +  + + L   +++  +      
Sbjct: 157 SKEIYTLLPSSNNELGKKLIEKTRDTLDAILKTWLFFSAAKAIFLALGFYIFDISNVGGS 216

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFL 300
           +A G++  I+ ++P         V   +L + +I  A    L+G + +    D  ++P L
Sbjct: 217 IAAGILCMILELLPVLGGWIMWIVGAIILWQKSIMLAILFALYGILTVSPFPDYFIKPRL 276

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           V     +  +    G+ GG+   G +G+ +GP+ + L + + +      +    + S 
Sbjct: 277 VRNRASVSSVVALVGIFGGIMAFGAVGILLGPISIGLFSALLEAWKEIEERETTQPSK 334


>gi|257899624|ref|ZP_05679277.1| conserved hypothetical protein [Enterococcus faecium Com15]
 gi|293570808|ref|ZP_06681855.1| transport protein [Enterococcus faecium E980]
 gi|257837536|gb|EEV62610.1| conserved hypothetical protein [Enterococcus faecium Com15]
 gi|291609076|gb|EFF38351.1| transport protein [Enterococcus faecium E980]
          Length = 379

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 54/320 (16%), Positives = 113/320 (35%), Gaps = 15/320 (4%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L   F P+L A  I +   PI       +               +  F+V ++ +    
Sbjct: 40  MLSAIFLPLLVAGFIYYMFDPIVVFLEKHRIPR--------VFGFLLTFLVVIILVVLTV 91

Query: 86  MLEMKELVSKVVLANQHGIPVPR----WLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
           M  + +LV + +   Q           WL+++       E    +L    +   LS + L
Sbjct: 92  MNVVPQLVEQTIQLTQSLPIYADETSKWLNEL---AQREEFKNFNLEEQLASANLSLSNL 148

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
               +  +    ++     + + + +  +   L F ++DG      L            +
Sbjct: 149 FNIILVSLSASVTKIISFMMQFFILLFTVPFILLFMFKDGHKFIDALSHFFPKAIRKELR 208

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +  + + + + +      + A+  G++   A  +   P  + L VI  I  +IP   P  
Sbjct: 209 QTVKELNETLSAYISSTILDALIIGVMSFLAMRIFNQPYSLLLAVICGITNIIPYVGPFI 268

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               +I + +  + F A  + L   +   +    ++P L G  + +  L     L+G   
Sbjct: 269 GAVPAIIVGLFISPFQALYMALSILVIQQLDGNLIKPLLFGKSMNIHPLTIILVLIGAGS 328

Query: 322 TMGLLGLFIGPVLMALIAVI 341
             G+LG+ I   + A+I  I
Sbjct: 329 VAGILGMLICIPVYAVIKTI 348


>gi|302527288|ref|ZP_07279630.1| predicted protein [Streptomyces sp. AA4]
 gi|302436183|gb|EFL07999.1| predicted protein [Streptomyces sp. AA4]
          Length = 405

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 58/350 (16%), Positives = 120/350 (34%), Gaps = 20/350 (5%)

Query: 13  RWMIMFIILVSLYFLKGFF----APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           R++I+  +L    +  G+      P+  AL++     P+    +      +         
Sbjct: 36  RFLIVLTMLGVAAWTLGYLSAVTVPIGIALLLSALFAPLVERLVRWHVPRA--------- 86

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +   +  ++ L   G +    + +      Q G  V   L+ I   +    L    L 
Sbjct: 87  --LATLVAIIVGLAVLGGVLTLVVTTVTASLPQLGNQVGASLARINNWLQHGPLHLPQLQ 144

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 + +           +   A+  G +  +  L++  ++    FF   G  +   L
Sbjct: 145 QLLDKAVSAIQGNTAELTTRVLSTAATVGGVLTEMLLTLFVLV----FFLYSGNQVWHFL 200

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +             R     + S       +A  + + +G   WL GVP  V L  + 
Sbjct: 201 LKIVPSATRDEIDVAGRRGFASLVSYVRATVAVACVDAVCIGLGIWLVGVPLAVPLAALI 260

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIKL 307
            I A IP    +   AV++ + +  N F A  + L   + +  ++   L+PFL+G  ++L
Sbjct: 261 FIGAFIPILGAVVTGAVAVLIALVANGFVAAGIVLAIVVAVMQLESHVLQPFLLGRAVRL 320

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
             L    G+  G+   G++G  +   ++A+              +   I 
Sbjct: 321 HPLAVVLGIALGLEIAGIVGALLAVPILAVAKAALGSLQRDPPLDPVDID 370


>gi|227819774|ref|YP_002823745.1| ABC transporter transmembrane protein [Sinorhizobium fredii NGR234]
 gi|227338773|gb|ACP22992.1| integral membrane transport protein [Sinorhizobium fredii NGR234]
          Length = 672

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/337 (13%), Positives = 110/337 (32%), Gaps = 22/337 (6%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           YF    F P+  A+++ F   P+      ++      +AVI TV+   LF   L      
Sbjct: 55  YFASEVFLPLAIAILLTFALAPVVFRL--RRAGLPRSVAVIGTVATAFLF---LSAFSII 109

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS---------------H 129
             +++ E+   +     + I   R L +        E  ++ +                 
Sbjct: 110 LAMQVSEVAQNLPTYQYNIIEKIRVLKEAGSESQIFERLSRVVERISTEISRPKPETPVS 169

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
           P          ++    +   +         L    +   +I+ + F   +   +  +  
Sbjct: 170 PAPEPEQEPLLVEIFAPERPLQTLRNIIDPLLGPLATTGLVIVVVIFMLFEREELRDRFI 229

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L  +       +  +     +    L   ++ +  G+ L    WL G+P+ +  G++  
Sbjct: 230 RLVGYGDLHRTTEALQDAGARVGQYLLMQLVVNVTYGIPLAIGLWLLGIPNAILWGMLAI 289

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF--IVDKTLRPFLVGGPIKL 307
           ++  +P   P+   A+ ++L        +  ++          + +  + P+L G    L
Sbjct: 290 VLRFVPYIGPVIAAALPLFLAFAAAPGWSLLVWTAALFIALELLSNNVVEPWLYGSRTGL 349

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L      +      G +GL +   L   + V+ + 
Sbjct: 350 SPLAIIVSAIFWAWLWGPVGLVLSTPLTVCLVVLGRH 386


>gi|169632703|ref|YP_001706439.1| PerM family permease [Acinetobacter baumannii SDF]
 gi|169795048|ref|YP_001712841.1| PerM family permease [Acinetobacter baumannii AYE]
 gi|184159168|ref|YP_001847507.1| permease [Acinetobacter baumannii ACICU]
 gi|213158290|ref|YP_002320341.1| permease [Acinetobacter baumannii AB0057]
 gi|215482597|ref|YP_002324789.1| hypothetical protein ABBFA_000876 [Acinetobacter baumannii
           AB307-0294]
 gi|239501015|ref|ZP_04660325.1| hypothetical protein AbauAB_01772 [Acinetobacter baumannii AB900]
 gi|260556531|ref|ZP_05828749.1| permease [Acinetobacter baumannii ATCC 19606]
 gi|294836605|ref|ZP_06781288.1| hypothetical protein A60131_01655 [Acinetobacter sp. 6013113]
 gi|294840701|ref|ZP_06785384.1| hypothetical protein A6014_02507 [Acinetobacter sp. 6014059]
 gi|294860824|ref|ZP_06798593.1| hypothetical protein A6013_19681 [Acinetobacter sp. 6013150]
 gi|301347426|ref|ZP_07228167.1| hypothetical protein AbauAB0_14283 [Acinetobacter baumannii AB056]
 gi|301513661|ref|ZP_07238898.1| hypothetical protein AbauAB05_18835 [Acinetobacter baumannii AB058]
 gi|301596501|ref|ZP_07241509.1| hypothetical protein AbauAB059_11822 [Acinetobacter baumannii
           AB059]
 gi|169147975|emb|CAM85838.1| putative permease (PerM family) [Acinetobacter baumannii AYE]
 gi|169151495|emb|CAP00258.1| putative permease (PerM family) [Acinetobacter baumannii]
 gi|183210762|gb|ACC58160.1| predicted permease [Acinetobacter baumannii ACICU]
 gi|193078086|gb|ABO13021.2| putative permease (PerM family) [Acinetobacter baumannii ATCC
           17978]
 gi|213057450|gb|ACJ42352.1| permease [Acinetobacter baumannii AB0057]
 gi|213987714|gb|ACJ58013.1| conserved hypothetical protein [Acinetobacter baumannii AB307-0294]
 gi|260409790|gb|EEX03090.1| permease [Acinetobacter baumannii ATCC 19606]
 gi|322509082|gb|ADX04536.1| Putative permease [Acinetobacter baumannii 1656-2]
 gi|323519112|gb|ADX93493.1| permease [Acinetobacter baumannii TCDC-AB0715]
          Length = 397

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/334 (16%), Positives = 126/334 (37%), Gaps = 18/334 (5%)

Query: 28  KGFFAPVLSALIIGFTSWPI-----YSSFISKKEESSTFLAVIATVSVMCLFIVPLLF-L 81
           K    P + A  + +   P+               S  F+ +  T++V   ++VPL++  
Sbjct: 26  KPVVIPFIGAFFLAYLFSPLVEVLVKIKIPRWLAISIVFIGIGVTLTVALWYLVPLIWKQ 85

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
             Y    +   +  +         +  W+S         ++        +++    +T  
Sbjct: 86  LVYARDSIPAGIHWINAE------LLPWISST---FHVQQMEIDTDQMSKAVMDYVQTNY 136

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             + I  +    ++ G+ F+    +++ + I  F+F  D   + Q L  L    + A   
Sbjct: 137 SADSIQAVLLKLAQSGLNFIQIGGTVVLIPIIAFYFLLDWDRMLQNLRRLIPRPYEATTL 196

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +I R    V+ +   G  ++ +  G+V      L G+   + +G++  + ++IP      
Sbjct: 197 QIVRECHSVLGAFVKGQFLVMLLLGVVYAVGLQLIGLEVGLIIGMVAGLASIIPYLGFAV 256

Query: 262 FTAVSIYLLI---KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
               ++   +     +  +   + +   I   +    L+PFL+G  I L  +   F ++ 
Sbjct: 257 GIIAAVIASLFQFGMDWTHLLLVGVVFMIGQAVEGYILQPFLLGDKIGLSPVAVVFAVLA 316

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           G +  G LG+ I   + A+I V+ K      + +
Sbjct: 317 GAQLAGFLGMLIALPVAAVIVVLLKHLRENYERS 350


>gi|313904506|ref|ZP_07837882.1| protein of unknown function UPF0118 [Eubacterium cellulosolvens 6]
 gi|313470648|gb|EFR65974.1| protein of unknown function UPF0118 [Eubacterium cellulosolvens 6]
          Length = 430

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 124/352 (35%), Gaps = 18/352 (5%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPI---YSS--FISKKEE--SSTFLAVIATVSVM 71
           I    +     F  PV   LII +   P+   Y    F    +         V A ++V+
Sbjct: 34  IFFTGISAFLDFIYPVFLGLIIAYIMDPLVMLYQKNVFQRVSKNTIRRNLSVVAAVITVL 93

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              I  ++ L    +  +   V  +    +    + + L ++    W  +L +       
Sbjct: 94  AGIIFLMVALIPQIVNSISTFVGNIETYAKSLQKLLKDLENL-SSSWKFDLSSVISQGED 152

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            ++ L     K   ++ I      FG     + +  IF I    +F  D   +      L
Sbjct: 153 MVEKLLADMPKN--LNAILDTTVSFGKSIASWVIGAIFAI----YFLIDKDRLKNAGSKL 206

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW----LAGVPSHVALGVI 247
                     +   +  +      +   +  + +GL++G   W    +A +P  + + V+
Sbjct: 207 LRSFVLDRTYRNYVVFWERSNQILIRYIVYDVLDGLIIGVTNWFFMAVADMPYGLLISVV 266

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  + P   PI   A+  ++L+  N + A    ++  +   +    L+P L    + +
Sbjct: 267 VGVTNLAPTFGPIVGGAIGAFILVLINPWYALTFLIFTIVLQTVDGYILKPKLFAATLGV 326

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             +     +V G R  G+ G+ +     A++  I+KESI+     ++     
Sbjct: 327 SGVWILICIVVGGRMFGVGGILLAIPFAAIMDYIYKESILVSLAERKARREE 378


>gi|228953629|ref|ZP_04115670.1| hypothetical protein bthur0006_30060 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228959546|ref|ZP_04121229.1| hypothetical protein bthur0005_30270 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229110765|ref|ZP_04240328.1| hypothetical protein bcere0018_30150 [Bacillus cereus Rock1-15]
 gi|229128624|ref|ZP_04257602.1| hypothetical protein bcere0015_30700 [Bacillus cereus BDRD-Cer4]
 gi|229145928|ref|ZP_04274307.1| hypothetical protein bcere0012_30770 [Bacillus cereus BDRD-ST24]
 gi|228637536|gb|EEK93987.1| hypothetical protein bcere0012_30770 [Bacillus cereus BDRD-ST24]
 gi|228654817|gb|EEL10677.1| hypothetical protein bcere0015_30700 [Bacillus cereus BDRD-Cer4]
 gi|228672644|gb|EEL27925.1| hypothetical protein bcere0018_30150 [Bacillus cereus Rock1-15]
 gi|228800115|gb|EEM47049.1| hypothetical protein bthur0005_30270 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228806054|gb|EEM52632.1| hypothetical protein bthur0006_30060 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 376

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 121/326 (37%), Gaps = 5/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + FLK  F PVL A ++ +   P + S + KK  S         + V+ LF+
Sbjct: 44  ISFVFTPFIVFLKTIFFPVLLAGVLFYILHP-FVSLLEKKGVSRIVSIASIYLIVLGLFV 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             ++ +      ++  L+  +           R      G         ++L+   +  +
Sbjct: 103 FLVVTVIPIIKDQIDALIDNLPYFGHEIEQAARRF----GESNLLGKIQENLNINVANMV 158

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   T  +  +    + F     +  L+ + +   LF+  +DG  +           
Sbjct: 159 KEYTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQ 218

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +I   +   I S   G  I+++  G++L   Y + G+   V L ++  I+ ++P
Sbjct: 219 RQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVP 278

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI     ++ +    +      + +   +      K + P ++G  + +  +   F 
Sbjct: 279 YVGPIIAITPALIIAFIDSPAMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFI 338

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++      G++G+ +     A++ V+
Sbjct: 339 ILTAGNLFGIMGIILAIPGYAILKVL 364


>gi|257125600|ref|YP_003163714.1| sporulation integral membrane protein YtvI [Leptotrichia buccalis
           C-1013-b]
 gi|257049539|gb|ACV38723.1| sporulation integral membrane protein YtvI [Leptotrichia buccalis
           C-1013-b]
          Length = 394

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/339 (15%), Positives = 118/339 (34%), Gaps = 9/339 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             ++ +++  ++ L  F  P   AL     + P+     +K + S     +I+ V+ + +
Sbjct: 18  IALILLVVFIVFKLGIFLFPFTIALFFSILARPLTRFLQNKLKLSKKIATIISIVTFLLI 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           F   + +     + E+ +L   +   ++    +  W   +         +    +   + 
Sbjct: 78  FFGIIGWCSLKLVSEIYKLSQNLNSYSEMIQKL--WTDSMAKIYSYLGNFPSGFTKQIND 135

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            I       +  +    +    F        L I   I+A FF   D   I   L+    
Sbjct: 136 AINGFISSGSAKLGTFIKGLINFITSIPTLILYICITILATFFISLDRDKIISFLEQQFP 195

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL-----VLGSAYWLAGVPSHVALGVIT 248
             +      I   +  V+ S      I+           +   ++    V   + + +I 
Sbjct: 196 KSWLDKLFNIKTDMFTVLGSYIKAQIILMTICFFELLVCLNLLSFLHFNVAYPLLMSIII 255

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  +P  GA       ++     G+I     L +   I L  V + L P LV   + +
Sbjct: 256 CAIDALPILGAGTILIPWAVISFALGDIKLGIALIMIYLIVLS-VRQMLEPKLVSQNLGV 314

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
             L T   +  G +  G++G  IGP++M ++  ++ + +
Sbjct: 315 HPLITLISMYSGFKIFGVIGFLIGPIVMIILKNVFSKEL 353


>gi|261408740|ref|YP_003244981.1| sporulation integral membrane protein YtvI [Paenibacillus sp.
           Y412MC10]
 gi|329930454|ref|ZP_08283994.1| sporulation integral membrane protein YtvI [Paenibacillus sp. HGF5]
 gi|261285203|gb|ACX67174.1| sporulation integral membrane protein YtvI [Paenibacillus sp.
           Y412MC10]
 gi|328934832|gb|EGG31322.1| sporulation integral membrane protein YtvI [Paenibacillus sp. HGF5]
          Length = 343

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 57/321 (17%), Positives = 134/321 (41%), Gaps = 6/321 (1%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
           AP L A++I     P+    + +   +    A + +   + L    LL  +  G+    +
Sbjct: 24  APFLLAIVIAIALEPLNRLLMKRLRLNRIAAATVTSTLFLLLM---LLLAYLIGLQVFNQ 80

Query: 92  LVSKVVLANQHGIPVPRWLSD-IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           LV     A Q+      +L   I          +  L+   +  + + +    + ++ + 
Sbjct: 81  LVEYWSRAPQYFAGANEFLQHTIIQAQDMLNGVSPGLADSLTEFMSNISSYVQSLVNSVS 140

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                F     +  ++ I   +A++ F     ++ +++ SL +    +   ++   + K 
Sbjct: 141 STFLSFAKTLPNLFVTFIVFCVAVYLFAFSLDTMREKVLSLFDESSQSQVNEVLLSLKKS 200

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
           I        I+++   ++      + G+   +A+ ++  I+ ++P  G        SIYL
Sbjct: 201 IFGFLRAQLILSLFTYVITLLGLLVLGINYPLAIALLVTIVDILPILGVGSVLIPWSIYL 260

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           L  G+IF    L ++  I + ++ + L P ++G  + +  LP    +  G + +G++G F
Sbjct: 261 LAVGDIFTGIGL-IFLFILITVIRRVLEPKVIGDAVGIGALPALVSMYVGFKLVGVIGFF 319

Query: 330 IGPVLMALIAVIWKESIMAIK 350
           IGP+++ + + + K  +  IK
Sbjct: 320 IGPLVVIIYSAMRKAGLFQIK 340


>gi|229070801|ref|ZP_04204029.1| hypothetical protein bcere0025_29760 [Bacillus cereus F65185]
 gi|229080564|ref|ZP_04213084.1| hypothetical protein bcere0023_32080 [Bacillus cereus Rock4-2]
 gi|229151535|ref|ZP_04279738.1| hypothetical protein bcere0011_30800 [Bacillus cereus m1550]
 gi|229179632|ref|ZP_04306983.1| hypothetical protein bcere0005_29800 [Bacillus cereus 172560W]
 gi|228603835|gb|EEK61305.1| hypothetical protein bcere0005_29800 [Bacillus cereus 172560W]
 gi|228632078|gb|EEK88704.1| hypothetical protein bcere0011_30800 [Bacillus cereus m1550]
 gi|228702665|gb|EEL55131.1| hypothetical protein bcere0023_32080 [Bacillus cereus Rock4-2]
 gi|228712191|gb|EEL64138.1| hypothetical protein bcere0025_29760 [Bacillus cereus F65185]
          Length = 376

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 121/326 (37%), Gaps = 5/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + FLK  F PVL A ++ +   P + S + KK  S         + V+ LF+
Sbjct: 44  ISFVFTPFIVFLKTIFFPVLLAGVLFYILHP-FVSLLEKKGVSRIVSIASIYLIVLGLFV 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             ++ +      ++  L+  +           R      G         ++L+   +  +
Sbjct: 103 FLVVTVIPIIKDQIDALIDNLPYFGHEIEQAARRF----GESNLLGKIQENLNINVANMV 158

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   T  +  +    + F     +  L+ + +   LF+  +DG  +           
Sbjct: 159 KDYTVDFTKSLSSVTGNVTGFLSTITEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQ 218

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +I   +   I S   G  I+++  G++L   Y + G+   V L ++  I+ ++P
Sbjct: 219 RQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVP 278

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI     ++ +    +      + +   +      K + P ++G  + +  +   F 
Sbjct: 279 YVGPIIAITPALIIAFIDSPAMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFI 338

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++      G++G+ +     A++ V+
Sbjct: 339 ILTAGNLFGIMGIILAIPGYAILKVL 364


>gi|227513953|ref|ZP_03944002.1| possible permease [Lactobacillus fermentum ATCC 14931]
 gi|227087664|gb|EEI22976.1| possible permease [Lactobacillus fermentum ATCC 14931]
          Length = 369

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/328 (14%), Positives = 117/328 (35%), Gaps = 10/328 (3%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS----KKEESSTFLAVIATVSVMCL 73
           F+    L F+     P++ +L + +   P++   +     K        +++  + ++ +
Sbjct: 30  FVFTPLLVFVSVVITPLIISLFLYYMLNPLFRLLMKIKVYKWHMKRGIASLVVVIGLVLI 89

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               +  L    + E+ +++  +  A +    + + +S+ P             ++   +
Sbjct: 90  VAGGISALIPSVLNELNQVIHWLPQAAKEIQKMIQEISEHPWVRKL-----HLSTYYGQI 144

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                 +++           +  G I     ++I    + LF+ ++DG  +   +  L  
Sbjct: 145 NDQVSKYVRQIVTGLTSSAGTIIGTITSTVIVAITV-PVMLFYMFKDGNRLVPSVQKLFP 203

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   ++ R + K + S   G  I  +   +     Y + G P  V LGV+  I  M
Sbjct: 204 ESSQDEVGELLRKMSKTLSSYISGQAIECLFVAIATSIGYLIIGQPLAVVLGVVAGIANM 263

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P      S+ + I         + +   I   I    + P ++G  +++  L   
Sbjct: 264 IPYVGPYIGITPSLMVSIAVAPEKIIWVIVVVVIVQQIDGNIIYPNIIGKTLQIHPLTII 323

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             L+      G+ G+ +     A++  +
Sbjct: 324 MLLLAAGNIAGIPGMILCIPCYAVVKTV 351


>gi|15615484|ref|NP_243787.1| hypothetical protein BH2921 [Bacillus halodurans C-125]
 gi|10175543|dbj|BAB06640.1| BH2921 [Bacillus halodurans C-125]
          Length = 361

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/335 (16%), Positives = 126/335 (37%), Gaps = 12/335 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F++  FAPV+ A I+ +   PI      K             +S++ LF++ +     + 
Sbjct: 36  FVQTLFAPVIIAGILYYLFRPIVGLLSKKMNRG---------LSILILFLMIIGAFTAFS 86

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           ++   EL  +      +   +   + D    + ++EL+ +             +    + 
Sbjct: 87  LIVGPELQRQFQSLYNNLPTLINQVRDTFIALQSNELFNRFQESETFQPEEMISRFVNSL 146

Query: 146 IDFIPRFASRFGMI---FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            D I    +          ++ + ++ +   LF+  ++G  +  QL  L         + 
Sbjct: 147 NDIIGTIGANITGFIGALANFFIILVLVPFILFYLLKEGEKLPVQLLKLFNKKQQHEGRL 206

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           I   + K++ S   G  I++   G++   AY + G+   + L ++     +IP   P   
Sbjct: 207 ILADMDKMLSSYIQGQIIVSFCVGILCYIAYLIIGLDYALILALVAMFTNVIPFVGPWIG 266

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
           T  ++ +    +   A  + +   +   I    + P ++G  + +  +   F L+   R 
Sbjct: 267 TFPAVIVAFIDSPLTALIVVIVVVVIQQIESNLISPQVMGKKLAIHPITIIFILLVAGRF 326

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
            G++G+ +     A+  VI   S    K  K+ + 
Sbjct: 327 AGVVGMLLAVPTYAVGKVIVTHSYRLWKLRKQPVE 361


>gi|2126791|pir||I39826 hypothetical protein cta locus ORF2 - Bacillus firmus
 gi|142791|gb|AAA22369.1| ORF2; putative [Bacillus firmus]
          Length = 385

 Score = 87.6 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 115/325 (35%), Gaps = 2/325 (0%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + + LV+ YF+     P+++AL+      P  ++   K +       ++     +    +
Sbjct: 49  ILLFLVAAYFILPVSLPLVAALLTALILTPAVNALQRKTKIKRNVAVMLVFTVFVVFIGL 108

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
              ++    + +  ++V                        + +           ++   
Sbjct: 109 SGYYIATKAITQGTQIVENSPQYISDINRAWLNFQRNLEEKYENLPPELVQEINITVTNT 168

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                       + +  +        Y ++ +  +IALF F  +   + ++L S      
Sbjct: 169 LSDLRSNIRDRNLIQDITSLISSIPGYLVTFLVYLIALFLFMLELPRLREKLYSYLSERT 228

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
                 ++  +  VI   F    +++I   +V             + +  I  ++  +P 
Sbjct: 229 KEKVNFMTSRLSYVIWGFFKAQFLVSIIIFIVTLIGLLFIAPEVALLMAFIIWLIDFVPI 288

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ +     +I+ LI G++   + L +  A  L I+ +T+ P ++G  I L  L T   
Sbjct: 289 IGSIVILAPWAIFQLIVGDVSTGSKLLIL-AAVLLIIRRTVEPKVMGKHIGLSPLATLIA 347

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAV 340
           +  G+   G++G  IGP+L+     
Sbjct: 348 MYLGLMLFGVIGFIIGPLLVIAFTS 372


>gi|317121059|ref|YP_004101062.1| hypothetical protein Tmar_0210 [Thermaerobacter marianensis DSM
           12885]
 gi|315591039|gb|ADU50335.1| protein of unknown function UPF0118 [Thermaerobacter marianensis
           DSM 12885]
          Length = 510

 Score = 87.2 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/330 (14%), Positives = 115/330 (34%), Gaps = 5/330 (1%)

Query: 19  IILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           +  ++ + L  F      +  A ++ F   P  S         +    ++    V  L +
Sbjct: 59  VAWLAWWVLSHFARTLTLLGLAGVLAFLLEPAVSFLERGMRSRALAALLLYLAFVALLAL 118

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +++L      + +EL   V    Q        L      + A          P+ L  
Sbjct: 119 G-VVYLAGPIKEQAQELFWAVPQYRQQVEQAVPLLQTYMEALQAYLSRYGVSLEPRDLAS 177

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                +  N    +    +    +      +++ ++I++ +   DG  +++Q+       
Sbjct: 178 QFLERVAGNTNRILAGVTAVVTGVGTTLANALLVLVISI-YLVVDGGGLNRQMLGYLPRR 236

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +    ++   +  +V      G  ++ +  G+ +G      G+P    LGVI  +M ++P
Sbjct: 237 YRGPVRRAQAVALRVFGGYLRGQLLLGLIIGVAVGIGMSALGMPYPALLGVIAGVMELVP 296

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
               +     +I + +         + L+  +   +    L P + G  + L  L T   
Sbjct: 297 IVGAVLGAIPAILVALFQPWPAVLYVTLFFVVVQQVEGNVLVPRITGQAVGLHPLATLLA 356

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           L+ G    G+LG  +   ++A +  + +E 
Sbjct: 357 LLAGYEIAGILGAILAVPVVAFVQALLREF 386


>gi|224372723|ref|YP_002607095.1| acid membrane antigen A [Nautilia profundicola AmH]
 gi|223589133|gb|ACM92869.1| acid membrane antigen A [Nautilia profundicola AmH]
          Length = 332

 Score = 87.2 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 63/342 (18%), Positives = 122/342 (35%), Gaps = 30/342 (8%)

Query: 15  MIMFIILVSLYFL----KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            + F+ +V  YF+    K +   +  A ++      + S  IS K E+    + + T+  
Sbjct: 3   FLTFLTIVVGYFVYLTYKPYLLDIAIASLMAIAFGKV-SVLISNKIENKYLSSTVVTLIF 61

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             L   P+L+        +  +  + +            L  +P  +             
Sbjct: 62  ALLIFGPILYFVVTAGKFISHIDIENIKNIIIKAQ--DLLQYLPQFV------------A 107

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           +               + +             +      ++I  FF    G  I +    
Sbjct: 108 EKAHEYINPDNIAQIYNTVAPIIGTLTAKSAVFIKDAFLIVIFFFFATLYGKEIMEFFKK 167

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +   L     +K+     +V+   F      AI EG++ G    + G  +     ++ A 
Sbjct: 168 VIP-LEEKQLEKLFFGTSEVMSVVFYSTVFTAILEGILFGIIAKVYGF-NFFFFTIMYAF 225

Query: 251 MAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLV------- 301
            ++IP  G  I +  VS+YL   GN   A  + L+  I + I+ D  ++P ++       
Sbjct: 226 SSLIPVIGGVIMWGPVSLYLYSIGNTTGAVVVALYSIIVISIIADTFIKPIIIEFVKKTF 285

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               +L  L  FF +V G+ + GL G+ IGP + A+   I +
Sbjct: 286 DADTELNSLLIFFSIVAGLSSFGLWGIIIGPAVTAMFISILR 327


>gi|315126962|ref|YP_004068965.1| permease (PerM) [Pseudoalteromonas sp. SM9913]
 gi|315015476|gb|ADT68814.1| permease (PerM) [Pseudoalteromonas sp. SM9913]
          Length = 358

 Score = 87.2 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 54/353 (15%), Positives = 122/353 (34%), Gaps = 14/353 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +    ++  ++  LYF      PVL ALII +   WP+    + +          I
Sbjct: 15  DPDSVTLLFLLLALVAMLYFFGPLIVPVLVALIIAYLLDWPVVH--LERFGLKRFTATGI 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + + +  +LF+      +   LV +     + G     +L D+P    +     +
Sbjct: 73  VMLIFIGIMLTLILFIGPVLWQQSSNLVQETPHMVEQG---KSFLLDLPDKYPSLISAEQ 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S   +++     F        +   +       + + + +I + + +FF  +D   +S
Sbjct: 130 VQSIVVTVETKVLDF-----GQVVLSASLNSLKDAVAWLIYLILVPLLVFFMLKDKVELS 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +  +          ++   + + I +   G     +  G V   A+ +  +     LG
Sbjct: 185 ASIAKMIPRQRRLIL-QVWHEMNQQIMNYIRGKVFEILIVGSVSFIAFTILDLRYAALLG 243

Query: 246 VITAIMAMIPG-GAPISFTA-VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V+     +IP  GA +      ++ L   G       + +   I   +    L P L   
Sbjct: 244 VLVGFSVLIPFVGAALVTIPVAAVALFQFGLETQFWTVLIIYGIIQALDGNVLVPLLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            + L  +     ++      G  G+F    L +L+  +        +E  +++
Sbjct: 304 AVDLNPVFIIVAVLFFGGLWGFWGVFFAIPLASLVKALINAWSSKHEELAQEL 356


>gi|312867392|ref|ZP_07727601.1| putative membrane protein [Streptococcus parasanguinis F0405]
 gi|311097093|gb|EFQ55328.1| putative membrane protein [Streptococcus parasanguinis F0405]
          Length = 391

 Score = 87.2 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/335 (14%), Positives = 111/335 (33%), Gaps = 5/335 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI +    F      PV+ + ++ +   PI   F+ +K     F        +  L I
Sbjct: 42  ITFIFIPIFEFAGAVMLPVIISGLLYYLLNPIVD-FLERKGLKRIFAISFVFFLIAVLLI 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L  +      ++      +    +          D            +      +   
Sbjct: 101 WGLAVVIPAVQRQVVSFFHNLPTYLEKANATIDDFLDNRVSSDVKPQLDEITKELSANIT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              + +    ++++         +     +++I M   +F+  RDG ++   +       
Sbjct: 161 SWASSISGRAVNWVSNLIGVASQV----IVALIIMPFIVFYLLRDGKNLKGHIVRFLPTK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                +++   V   + +   G   +AI   ++    + + G+   V LG+   I+ +IP
Sbjct: 217 IRKSAEQVLSDVNTQLSNYVRGQITVAIVVAIMFIIFFKIIGLRYAVTLGISAGILNLIP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +  A+E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLVAGPEMFIKVLIVFAVEQTIEGRFVSPLVLGSQLNIHPITILFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+      G+ G+F+G  + A   V+        K
Sbjct: 337 LLTSGSMFGIWGVFLGIPVYASAKVVIGAIFEWYK 371


>gi|229191452|ref|ZP_04318436.1| hypothetical protein bcere0002_31140 [Bacillus cereus ATCC 10876]
 gi|228592027|gb|EEK49862.1| hypothetical protein bcere0002_31140 [Bacillus cereus ATCC 10876]
          Length = 376

 Score = 87.2 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 121/326 (37%), Gaps = 5/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + FLK  F PVL A ++ +   P + S + KK  S         + V+ LF+
Sbjct: 44  ISFVFTPFIVFLKTIFFPVLLAGVLFYILHP-FVSLLEKKGVSRIVSIASIYLIVLGLFV 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             ++ +      ++  L+  +           R      G         ++L+   +  +
Sbjct: 103 FLVVTVIPIIKDQIDALIDNLPYFGHEIEQAARRF----GESNLLGKIQENLNINVANMV 158

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   T  +  +    + F     +  L+ + +   LF+  +DG  +           
Sbjct: 159 KEYTVDFTKSLSSVTGNVTGFLSTITEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQ 218

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +I   +   I S   G  I+++  G++L   Y + G+   V L ++  I+ ++P
Sbjct: 219 RQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVP 278

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI     ++ +    +      + +   +      K + P ++G  + +  +   F 
Sbjct: 279 YVGPIIAITPALIIAFIDSPAMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFI 338

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++      G++G+ +     A++ V+
Sbjct: 339 ILTAGNLFGIMGIILAIPGYAILKVL 364


>gi|317177600|dbj|BAJ55389.1| membrane protein [Helicobacter pylori F16]
          Length = 348

 Score = 87.2 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 134/363 (36%), Gaps = 25/363 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  Q     + +      +Y  + F    L A ++    + +      +        + +
Sbjct: 1   MKAQYFFWILFLIGFYWMIYLYQDFLMDALIAGLLCVGFFQVKVFLDKRFLN--LISSFL 58

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +  + IVPL F+ Y     + E+        +    + +WL         +E    
Sbjct: 59  CVLVLASVLIVPLYFIVYKSSNIIFEI------NFEKFSALIKWLKG-----TITENLLH 107

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +         E F   +   ++ + +S  G   L      +F++  LFFF+  G    
Sbjct: 108 FPTIHDGASKFLENFSAASITGYLLKISSYVGKYSLKLITDALFILGLLFFFFYYGERFY 167

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +   L     KKI   V  ++R   L   I  I EG+  G      G      LG
Sbjct: 168 RYFLGVLP-LGMNQSKKIFEEVAGILRIVLLTSLITVILEGVAFGLMIVWFGHDGWS-LG 225

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLV-- 301
           ++  + +++P  G  + +  ++IY L  GN+  A  + L+  + +  ++D  ++P L+  
Sbjct: 226 ILYGLASLVPAVGGALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVF 285

Query: 302 ------GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                    +K+  +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 286 IKKRIFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345

Query: 356 ISS 358
              
Sbjct: 346 ACE 348


>gi|229018580|ref|ZP_04175436.1| hypothetical protein bcere0030_31010 [Bacillus cereus AH1273]
 gi|229024834|ref|ZP_04181267.1| hypothetical protein bcere0029_31410 [Bacillus cereus AH1272]
 gi|228736468|gb|EEL87030.1| hypothetical protein bcere0029_31410 [Bacillus cereus AH1272]
 gi|228742719|gb|EEL92863.1| hypothetical protein bcere0030_31010 [Bacillus cereus AH1273]
          Length = 373

 Score = 87.2 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 121/326 (37%), Gaps = 5/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + FLK  F PVL A ++ +   P + S + KK  S         + V+ LF+
Sbjct: 41  ISFVFTPFIVFLKTIFFPVLLAGVLFYILHP-FVSLLEKKGVSRIVSIASIYIIVLGLFV 99

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             ++ +      ++  L+  +           R      G         ++L+   +  +
Sbjct: 100 FLVVTVIPIIKDQIDALIDNLPYFGHEIERAARRF----GESNLLGKIQENLNIDVASMV 155

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   T  +  +    + F     +  L+ + +   LF+  +DG  +           
Sbjct: 156 KDYTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQ 215

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +I   +   I S   G  I+++  G++L   Y + G+   V L ++  I+ ++P
Sbjct: 216 RQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVP 275

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI     ++ +    +      + +   +      K + P ++G  + +  +   F 
Sbjct: 276 YVGPIIAITPALIIAFIDSPSMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFI 335

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++      G++G+ +     A++ V+
Sbjct: 336 ILTAGNLFGIMGIILAIPGYAILKVL 361


>gi|293402296|ref|ZP_06646434.1| membrane protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304403|gb|EFE45654.1| membrane protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 403

 Score = 87.2 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 105/302 (34%), Gaps = 12/302 (3%)

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
                 A++A +  + +    L  L    M  +  LV       +       +++D    
Sbjct: 81  HRRNIAAILAVLLGIIIVGAFLAMLIPQLMESILSLVKAFPGYME---DTQEFINDFIEE 137

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
              +      +    +L      F+ T+ +  + ++  +FG   LD  L     I++  +
Sbjct: 138 NGIAAEEITKMLSQNNLLTRMTEFV-TDAVPKMLKYTYQFGSTLLDIVLG----IMSGLY 192

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIV----PKVIRSTFLGMTIIAIGEGLVLGSA 232
              D   +      +   LFP    +    +      +  +  +G  I ++  G++    
Sbjct: 193 MLIDKERLMGYAKRINYALFPIEIAEYLHRMTLASGDIFNNFIVGKAIDSLIIGILCYIG 252

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
             +   P  + L V   +  MIP   P       I +L   +   A    L+  +     
Sbjct: 253 SLIFQFPYALLLSVFVGVTNMIPVFGPFIGAVPGIVILFIIHPITALYFALFIFVLQQFD 312

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              L P ++G  + LP +   F +  G    G++G+FIG    A+I    +E +    + 
Sbjct: 313 GNILGPLILGDKLGLPSIGILFSVCVGGGLFGIIGMFIGVPCFAVIYAAVREFVNYRLKQ 372

Query: 353 KE 354
           K+
Sbjct: 373 KK 374


>gi|86739869|ref|YP_480269.1| hypothetical protein Francci3_1161 [Frankia sp. CcI3]
 gi|86566731|gb|ABD10540.1| protein of unknown function UPF0118 [Frankia sp. CcI3]
          Length = 415

 Score = 87.2 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 97/307 (31%), Gaps = 14/307 (4%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P+++ L+I     P+      +   +    A  A      +F+   + + +    E+  +
Sbjct: 110 PLIAGLLIAALIHPLAHRL-QRLGMNRLGAAFTALFVFFAVFVGAGVAVGFNAANEIPTV 168

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
             +V             +  I G +    L          +  + ++     G   +   
Sbjct: 169 SDQVSEG----------VEQIRGYLRNGPLHLSQSQIDNLVDDIRKSLANNRGR--LVSG 216

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
                 +  +    ++  + + FFF  DG  I   + +          +   R     + 
Sbjct: 217 VISGASVAAEVLTGLLVTLFSTFFFLYDGDRIWNWIVTRFPDGAEERVRGAGREAWNTLT 276

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI 271
               G   +A  + + +       GVP    L ++T     +P  GA ++  A  +  L+
Sbjct: 277 GYIRGTVFVAAVDAIGITIGLVGVGVPLVAPLALLTFFGGFVPIVGATVAGAAAVLVTLV 336

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
              + +A  +         +    L+P ++   ++L  L     L  G    G+ G    
Sbjct: 337 SNGVPDALIILGVVLAVQQVEGHLLQPLVMRRAVRLHPLAIVIALSAGGVLAGIPGAIAA 396

Query: 332 PVLMALI 338
               A++
Sbjct: 397 VPFAAMV 403


>gi|114764029|ref|ZP_01443270.1| Lipocalin-related protein and Bos/Can/Equ allergen [Pelagibaca
           bermudensis HTCC2601]
 gi|114543621|gb|EAU46635.1| Lipocalin-related protein and Bos/Can/Equ allergen [Roseovarius sp.
           HTCC2601]
          Length = 356

 Score = 87.2 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/340 (16%), Positives = 116/340 (34%), Gaps = 14/340 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             I +V L+ L     P +    + +   P+      +   S        TV+++ +F++
Sbjct: 16  AAIFVVMLWVLGDVLLPFVVGGAVAYFLDPVADRLE-RVGMSRGMATGTITVAMILIFVI 74

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             L +    + +  +L+             P     +   +            P    ++
Sbjct: 75  LALAVVPALVRQTSQLIE----------TAPELFRQLQAFLSTHFPSIMVEGSPVRETLV 124

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           S           +        M  ++  L  + + +   +   D  ++  ++DSL     
Sbjct: 125 SIGETIRERGAQLIDAVLTSAMSLINILLLFVIVPVVAVYMLLDWDNMVARVDSLLPRDH 184

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               +K++R + K +     GM  + +  G     A WL G+   + +GV+  I+  IP 
Sbjct: 185 APVIRKLARDIDKTLAGFIRGMGSVCLILGFYYALALWLVGLNFGLVVGVVAGILTFIPY 244

Query: 257 GAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
              I   A++I L +    G       +        F+    L P LVG  + L  +   
Sbjct: 245 VGAIVGGALAIGLALFQFWGEWVWIAAVAGIFFFGQFLEGNFLTPKLVGESVGLHPVWLI 304

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             L       G +G+ +   L A + V+ +  +    E++
Sbjct: 305 LALSVFGSIFGFVGMLVAVPLAAALGVVARFLVDQYIESR 344


>gi|116494273|ref|YP_806007.1| permease [Lactobacillus casei ATCC 334]
 gi|191637608|ref|YP_001986774.1| Predicted permease [Lactobacillus casei BL23]
 gi|239629657|ref|ZP_04672688.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301065781|ref|YP_003787804.1| putative permease [Lactobacillus casei str. Zhang]
 gi|116104423|gb|ABJ69565.1| Predicted permease [Lactobacillus casei ATCC 334]
 gi|190711910|emb|CAQ65916.1| Predicted permease [Lactobacillus casei BL23]
 gi|239528343|gb|EEQ67344.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300438188|gb|ADK17954.1| Predicted permease [Lactobacillus casei str. Zhang]
 gi|327381659|gb|AEA53135.1| hypothetical protein LC2W_0801 [Lactobacillus casei LC2W]
 gi|327384826|gb|AEA56300.1| hypothetical protein LCBD_0802 [Lactobacillus casei BD-II]
          Length = 388

 Score = 87.2 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/345 (13%), Positives = 118/345 (34%), Gaps = 19/345 (5%)

Query: 17  MFIILVSLYFLKGFF-------APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           +F+     +  +           P + A I+ + + PI +    K      +        
Sbjct: 31  IFVFTKIAWVFQPVLDFLGIIAPPFIFAGILFYLTVPIINRLE-KFGLHRGWA------- 82

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +  LFIV +  L +  +  +  + +++         +   +      +   +        
Sbjct: 83  IGLLFIVLIGLLAWGLLRFIPAVSNQITSIVHSAPQIFDEIGKWLDNLNDQQNILSQHDL 142

Query: 130 PQSLKILSETFLKTNGIDFIPRFAS--RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            +    +   F    G       +       I  +  ++I    I LFF  +DG   +  
Sbjct: 143 NEIAAEVQSFFTGKQGAFVTGTISQLQNLIGIVGNVVITISTAPIILFFMLKDGDKFTPM 202

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  +         K++   + + + S   G   +A+   ++    Y + G+   +  G++
Sbjct: 203 VLHIVPTKLRRSVKQMLHEMNEKVGSYVQGQITVALCVAVMFMVGYSVIGLRYGLIFGLL 262

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
              + +IP  G+ ++     I   +  +      + +   IE  I  + + P ++G  ++
Sbjct: 263 ACPLNLIPYFGSALAMIPPLIMGALT-SPRMILAVIIVFFIEWLIETQVISPLVMGSKLE 321

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L  +     L+      GL+G+ +G    A++ ++        ++
Sbjct: 322 LHPITIVVVLLTAGNLFGLVGVILGIPGFAVLKIVVTRFFSWYQQ 366


>gi|327472814|gb|EGF18241.1| permease [Streptococcus sanguinis SK408]
          Length = 365

 Score = 87.2 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 63/336 (18%), Positives = 117/336 (34%), Gaps = 17/336 (5%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES---STFLAVIATVSVMCLFIV 76
           I   L  L   F+P++   ++ F             ++          +A V  + +  +
Sbjct: 27  IWSGLQSLTSVFSPIILGGVLAFIFNVPMKKLEDFLDKCLVPQKLQRGLALVLEVLILAL 86

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            +  +    +  +   V+++        P V +WL                       K 
Sbjct: 87  IMTGIVSIVVPTLTTAVNQLSATIGKVAPQVAKWLQQ--------SGLLSSSQLKDLTKQ 138

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           L  + +    I  +         IF ++  S+I  I  +F F      +      L + L
Sbjct: 139 LQNSDIVNRAISLLGSLTGNISAIFGNFF-SVIMSIFLMFAFLSSKEHLQTITSRLLQVL 197

Query: 196 FPAYWKKISRIVPKVIRST----FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
            P    K    V  VI  T     +G  I A+  G+++  AY L G+P     GV+  ++
Sbjct: 198 LPEKAVKRLSYVGSVIVETYDKFLMGQMIEAVIVGILVFIAYSLTGLPYAALTGVLAGVL 257

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           + IP   P S  A+    +   + + A            I    + P +VG  + LP L 
Sbjct: 258 SFIPYIGPFSACALGAIFIFTDSPWKALLSIAVFQGVQLIEGNVIYPRVVGQSVGLPTLF 317

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           T    + G    GL+G+     + A+I  + +E ++
Sbjct: 318 TLAAALIGGNLFGLVGMIFFTPIFAVIYRLVREFVV 353


>gi|299783476|gb|ADJ41474.1| Putative uncharacterized protein [Lactobacillus fermentum CECT
           5716]
          Length = 369

 Score = 87.2 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/346 (14%), Positives = 123/346 (35%), Gaps = 10/346 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS----KKEESSTFLAVIATVSVMCL 73
           F+    L F+     P++ +L + +   P++   +     K        +++  + ++ +
Sbjct: 30  FVFTPLLVFVSVVITPLIISLFLYYMLNPLFRLLMKIKIYKWHMKRGIASLVVVIGLVLI 89

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               +  L    + E+ +++  +  A +    + + +S+ P             ++   +
Sbjct: 90  VAGGISALIPPVLNELNQVIHWLPQAAKESQKMIQEISEHPWVRKL-----HLSTYYGQI 144

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                 +++           +  G I     ++I    + LF+ ++DG  +   +  L  
Sbjct: 145 NDQVSKYVRQIVTGLTSSAGTIIGTITSTVIVAITV-PVMLFYMFKDGNRLVPSVQKLFP 203

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   ++ R + + + S   G  I  +   +     Y + G P  VALGV+  I  M
Sbjct: 204 ENSRDEVGELLRKMSQTLSSYISGQAIECLFVAIATSIGYLIIGQPLAVALGVVAGIANM 263

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +P   P      S+ + I         + +   I   I    + P ++G  +++  L   
Sbjct: 264 VPYVGPYIGITPSLMVSIAVAPEKIIWVIVVVVIVQQIDGNIIYPNIIGKTLQIHPLTII 323

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             L+      G+ G+ +     A++  I    I      K +  +N
Sbjct: 324 MLLLAAGNIAGIPGMILCIPCYAVVKTIVTYLISIYHLRKREGDNN 369


>gi|330504186|ref|YP_004381055.1| hypothetical protein MDS_3272 [Pseudomonas mendocina NK-01]
 gi|328918472|gb|AEB59303.1| hypothetical protein MDS_3272 [Pseudomonas mendocina NK-01]
          Length = 356

 Score = 87.2 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/324 (14%), Positives = 122/324 (37%), Gaps = 14/324 (4%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
               +P L  +++ +   P+       +   +  + V+  +          L L    ++
Sbjct: 24  HPILSPFLVGILLAYLGDPLVDRLERHRLSRTGGVVVVFALF--------ALLLLILLLV 75

Query: 88  EMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLKILSETFLKT-N 144
            +  L  ++V   Q    +  WL    +P       L    L   Q  ++ ++   KT +
Sbjct: 76  LVPMLGRQLVRLYQLAPEMLDWLQGTALPWSQSHLGLQDDVLQLDQLKQVFADNIGKTTD 135

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            +  +   A+  G+  L +  +++ + +  F+  RD   + +++  L          K++
Sbjct: 136 VLKVVLAQATSSGLALLAWLGNLLLIPVVSFYLMRDWDVLVERVRGLLPRQREGLVVKLA 195

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
               +V+ +   G  ++ +   ++      L G+   + +GV+  + +++P    I    
Sbjct: 196 GECHEVLGAFLRGQLLVMLALSVIYSVGLMLVGLELGLLIGVLAGLASIVPYMGFIVGIG 255

Query: 265 VSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
            ++   +       +    + +   I   +    L P LVG  I L  +   F ++ G +
Sbjct: 256 AALSAALFQFGLEPYPLIGIAVVFMIGQLLEGMVLTPMLVGDRIGLHPVAVIFAILAGGQ 315

Query: 322 TMGLLGLFIGPVLMALIAVIWKES 345
             G  G+ +   + A+I V+ + +
Sbjct: 316 LFGFTGVLLALPVAAVIMVLLRHA 339


>gi|222096816|ref|YP_002530873.1| hypothetical protein BCQ_3156 [Bacillus cereus Q1]
 gi|229197465|ref|ZP_04324192.1| hypothetical protein bcere0001_30100 [Bacillus cereus m1293]
 gi|221240874|gb|ACM13584.1| membrane protein, putative [Bacillus cereus Q1]
 gi|228586089|gb|EEK44180.1| hypothetical protein bcere0001_30100 [Bacillus cereus m1293]
          Length = 376

 Score = 87.2 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 121/326 (37%), Gaps = 5/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + FLK  F PVL A ++ +   P + S + KK  S         + V+ LF+
Sbjct: 44  ISFVFTPFIVFLKTIFFPVLLAGVLFYILHP-FVSLLEKKGVSRIVSIASIYLIVIGLFV 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +L +      ++  L+  +           R      G         ++L+   +  +
Sbjct: 103 FLVLTVIPIIKDQIDALIDNLPYFGHEIERAARRF----GESNLLGKIQENLNIDVASMV 158

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   T  +  +    + F     +  L+ + +   LF+  +DG  +           
Sbjct: 159 KDYTVDFTKSLSSVTGNVTGFLSTITEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQ 218

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +I   +   I S   G  I+++  G++L   Y + G+   V L ++  I+ ++P
Sbjct: 219 RRPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVP 278

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI     ++ +    +      + +   +      K + P ++G  + +  +   F 
Sbjct: 279 YVGPIIAITPALIIAFIDSPGMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFI 338

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++      G++G+ +     A++ V+
Sbjct: 339 ILTAGNLFGIMGIILAIPGYAILKVL 364


>gi|254422637|ref|ZP_05036355.1| conserved domain protein, putative [Synechococcus sp. PCC 7335]
 gi|196190126|gb|EDX85090.1| conserved domain protein, putative [Synechococcus sp. PCC 7335]
          Length = 365

 Score = 87.2 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 62/329 (18%), Positives = 134/329 (40%), Gaps = 22/329 (6%)

Query: 22  VSLYFLKGF---FAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           V+L     F   F   L+A ++ F   +P+   ++S+     +   ++  +  + +  V 
Sbjct: 26  VALQIFAYFRTQFTIFLTATLLSFVLNYPVQ--WLSRFRLRRSLAILLVLLITVSVLGVL 83

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
            + L    + ++ EL  ++          P W+      + A + W   L+ P  L  LS
Sbjct: 84  GVILAPPLVEQLNELSGRL----------PSWIDSSTSQVTAFQNWAVSLNLPIDLSRLS 133

Query: 138 ETFLKTNGIDFIPRFASRFGMI--FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                          AS  G++   +   + +   ++  F+    G  +   L       
Sbjct: 134 TQLQTRITTQVQTISASILGLLPDAISSVVDLGLTVVLTFYLLLHGERLWDGLYQWLPDS 193

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           + A  +    ++ +  ++ FLG   +A+  G  +  A+ +  VP  +  G+   +MA+ P
Sbjct: 194 WNARARP---LIKQNFQNYFLGQFTVAMLMGTAMTIAFVVIQVPFGLLFGIAVGVMAIFP 250

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G  +S T +S +L    +I+    +    A+   +V+  + P L+GG + L  +     
Sbjct: 251 FGPALSITIIS-FLTALKSIWLGVRVVTVAAVIDQVVENAIAPQLIGGFVGLNPVWILVS 309

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L+ G +  G+LGL +   + + I  I+++
Sbjct: 310 LLLGTKIAGVLGLIVAVPVASSIKSIFED 338


>gi|291540406|emb|CBL13517.1| Predicted permease [Roseburia intestinalis XB6B4]
          Length = 462

 Score = 87.2 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/372 (14%), Positives = 128/372 (34%), Gaps = 38/372 (10%)

Query: 6   LNPQGIMRWMIMFIILVS--LYFLKGF---------------FAPVLSALIIGFTSWPIY 48
           L PQ ++  +++F+      L+F   +                 P++  ++I +   PI 
Sbjct: 29  LKPQYVIIALVVFVTFCCCILFFFMIYRYNGFTDFWKKLSLILQPIIIGVVIAYLLNPIM 88

Query: 49  S------------SFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV 96
                           SK +   T   +  T S++ L  + +L +          + S +
Sbjct: 89  KFLEGHLLKFLEPRMKSKCKAKKTSRGIAITGSLVFLVGICVLLVAAIVPSISASIQSMI 148

Query: 97  VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
               Q    + +W+ ++  G   +EL +        +    ETF + +    +  + +  
Sbjct: 149 TSFPQEAKDLTKWVDEVTNGD--TELASMIQQGVDKITDTVETFFEDDIFSKVQTYLTSI 206

Query: 157 GMIF---LDYCLSIIFMIIALFFFYRDGFSISQQ----LDSLGEHLFPAYWKKISRIVPK 209
                  + + L++I  +I   +   D    + Q    + ++ + +         R   +
Sbjct: 207 TSGVIYGVKFVLNVIVGLIISVYVMADQEHFAGQAKKIVYAMFKPVRANVIVDTVRKSNE 266

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
           +      G  + +   G++      +  +P  V + VI  +  +IP   P      S  +
Sbjct: 267 IFSGFISGKILDSAIIGVLAYIVLAIMKMPDTVLVAVIIGVTNVIPFFGPFIGAVPSFII 326

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           ++  N        ++  +   I    + P ++G    L      F ++      G  G+ 
Sbjct: 327 IVLQNPIQGLYFLIFIVVLQQIDGNIIGPKILGSSTGLSAFWVVFAILVFGGLWGFPGML 386

Query: 330 IGPVLMALIAVI 341
           +G  LMA+I  +
Sbjct: 387 LGVPLMAVIYYV 398


>gi|229097812|ref|ZP_04228765.1| hypothetical protein bcere0020_30500 [Bacillus cereus Rock3-29]
 gi|229103884|ref|ZP_04234562.1| hypothetical protein bcere0019_30350 [Bacillus cereus Rock3-28]
 gi|228679452|gb|EEL33651.1| hypothetical protein bcere0019_30350 [Bacillus cereus Rock3-28]
 gi|228685569|gb|EEL39494.1| hypothetical protein bcere0020_30500 [Bacillus cereus Rock3-29]
          Length = 376

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 52/326 (15%), Positives = 121/326 (37%), Gaps = 5/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + FLK  F PVL A ++ +   P + S + KK  S         + V+ LF+
Sbjct: 44  ISFVFTPFIVFLKTIFFPVLLAGVLFYILHP-FVSLLEKKGVSRIVSIASIYLIVLGLFV 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             ++ +      ++  L+  +           R      G         ++L+   +  +
Sbjct: 103 FLVVTVIPIIKDQIDALIDNLPYFGHEIERAARRF----GESNLLGKIQENLNIDVANIV 158

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   T  +  +    + F     +  L+ + +   LF+  +DG  +           
Sbjct: 159 KDYTVDFTKSLSSVTGNVTGFLSTLTEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQ 218

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +I   +   I S   G  I+++  G++L   Y + G+   V L ++  I+ ++P
Sbjct: 219 RQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVP 278

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P+     ++ +    +      + +   +      K + P ++G  + +  +   F 
Sbjct: 279 YVGPVIAITPALIIAFIDSPGMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFI 338

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++      G++G+ +     A++ V+
Sbjct: 339 ILTAGNLFGIMGIVLAIPGYAILKVL 364


>gi|255279990|ref|ZP_05344545.1| sporulation integral membrane protein YtvI [Bryantella
           formatexigens DSM 14469]
 gi|255269763|gb|EET62968.1| sporulation integral membrane protein YtvI [Bryantella
           formatexigens DSM 14469]
          Length = 368

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 51/334 (15%), Positives = 114/334 (34%), Gaps = 15/334 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +   ++ ++  +L     P + A  I F    +      K      + A +       +F
Sbjct: 16  LFAVLVCLAWRYLYPALMPFILAFAIAF----LIRKLAGKLPCKGKWTATLLLALFYVIF 71

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
              +       +  +   ++ +    +  I       D   G   S L     S    ++
Sbjct: 72  FGTIFLGGSKMIGTVAGFITNLPELYRTQIVP---FLDGVSGDIGSILGKTDASLAGEIQ 128

Query: 135 ILSETFLKTNGIDF------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  +++ G +       I    S F        + +I M++A F+   D   I    
Sbjct: 129 KGIQQMIQSMGENLSSLSMNILTGLSEFVTGIPALVVKVIVMVVASFYMTADYDRIMAAA 188

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                       + +       +++      ++ +     L +  WL  +P    + +  
Sbjct: 189 GKYLPEKVKRTVRTVKEHGGNTLKAYLKSYFLLFLITFAELAAGLWLLRIPYAPLIALAI 248

Query: 249 AIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A+  ++P  G        +  LL+ GN   A  + +   + + IV  TL P +VG  + L
Sbjct: 249 AVFDILPVLGTGGILLPWTAVLLVMGNYPMAAGILVLYIVIV-IVRNTLEPKIVGKQVGL 307

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             L T   +  G++  GL G+ + P+ + ++  +
Sbjct: 308 HPLVTLVAMFTGLQLGGLPGIILAPMGVVILVNM 341


>gi|331700348|ref|YP_004336587.1| hypothetical protein Psed_6646 [Pseudonocardia dioxanivorans
           CB1190]
 gi|326955037|gb|AEA28734.1| protein of unknown function UPF0118 [Pseudonocardia dioxanivorans
           CB1190]
          Length = 493

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/316 (14%), Positives = 103/316 (32%), Gaps = 14/316 (4%)

Query: 39  IIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVL 98
           ++     P+    ++++         +  +  + L    L F+    +     L +++  
Sbjct: 149 LLSALLAPVVHWLVARRVPR-GPATFLVLIGGIALLGGLLSFVINTFIAGFPALQAQLTA 207

Query: 99  ANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGM 158
           + Q        +  +  G       ++  + P  ++         +  D +   A     
Sbjct: 208 SFQS-------VQQLLAGPPLRIPTSQLDNLPAQIEQAIR-----DNRDVLTSGALTTAA 255

Query: 159 IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
              +    +   + +L FF  DG  I + L                R     +       
Sbjct: 256 TVTEIAAGLALTLFSLIFFLYDGPRIWRFLLRAAPRARRERVDVAGRRAFASLVGYTRAT 315

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI-YLLIKGNIFN 277
            ++AI + + +G   W  GVP  V L  +  + A IP    +   AV++   L+   +  
Sbjct: 316 VLVAIVDAVGIGIGLWAVGVPLVVPLAALVFLGAFIPTVGAVVTGAVAVLIALVANGLIP 375

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           A  +         +    L+P L+G  + L  L     +  GV   G+ G  +   L+A+
Sbjct: 376 ALIILGVVVAVQQLEGHVLQPLLLGRAVSLHPLAVVLSVAAGVVISGIAGALLAVPLLAV 435

Query: 338 IAVIWKESIMAIKENK 353
           I    +      + + 
Sbjct: 436 ITAAVRSLTAPTEPSP 451


>gi|47564492|ref|ZP_00235537.1| hypothetical protein membrane Spanning protein [Bacillus cereus
           G9241]
 gi|228986432|ref|ZP_04146568.1| hypothetical protein bthur0001_31140 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|47558644|gb|EAL16967.1| hypothetical protein membrane Spanning protein [Bacillus cereus
           G9241]
 gi|228773253|gb|EEM21683.1| hypothetical protein bthur0001_31140 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 376

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 121/326 (37%), Gaps = 5/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + FLK  F PVL A ++ +   P + S + KK  S         + V+ LF+
Sbjct: 44  ISFVFTPFIVFLKTIFFPVLLAGVLFYILHP-FVSLLEKKGVSRIVSIASIYLIVIGLFV 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +L +      ++  L+  +           R      G         ++L+   +  +
Sbjct: 103 FLVLTVIPIIKDQIDALIDNLPYFGHEIERAARRF----GESNLLGKIQENLNINVANMV 158

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   T  +  +    + F     +  L+ + +   LF+  +DG  +           
Sbjct: 159 KDYTVDFTKSLSSVTGNVTGFLSTITEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQ 218

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +I   +   I S   G  I+++  G++L   Y + G+   V L ++  I+ ++P
Sbjct: 219 RRPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVP 278

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI     ++ +    +      + +   +      K + P ++G  + +  +   F 
Sbjct: 279 YVGPIIAITPALIIAFIDSPAMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFI 338

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++      G++G+ +     A++ V+
Sbjct: 339 ILTAGNLFGIMGIILAIPGYAILKVL 364


>gi|224418441|ref|ZP_03656447.1| membrane protein- permease [Helicobacter canadensis MIT 98-5491]
 gi|313141972|ref|ZP_07804165.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131003|gb|EFR48620.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 354

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 64/356 (17%), Positives = 133/356 (37%), Gaps = 19/356 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           MRE            I+ +I + L     F   +L A ++   +  I+   + K + +  
Sbjct: 1   MREASKGIYFFSAAFILTLIAL-LKLYSPFLMNILIAFLLFIATHSIFQVILKKIKSTFL 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++  + ++  F+       +Y  + +      + LA+         +  +  G    
Sbjct: 60  TSLLMTLLLLVLCFV-----PIFYVAINLASFAGNIDLASLQKFFTDMQVKILITGKDFL 114

Query: 121 ELWTKHLSHP-QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           E     L      L +   +      +       ++       +    +F++I LFFFY 
Sbjct: 115 EYLPVALQQQINDLLLSVNSINWAEILKKALSVVAKISTNSAYFLSDAVFIVIFLFFFYY 174

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G ++ +    +   +     K +   V  VI   F    +  + +G++ G         
Sbjct: 175 YGNALGRYCLEIIP-IEKQQIKTLYDEVSAVISVVFYSSIVSMVLQGVLFGILMAFYRYD 233

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLR 297
           S + LGV     ++IP  G  + +  V  Y L  GN+ NA  + L+  I +  + D  ++
Sbjct: 234 S-ILLGVFYGFASLIPVVGGTLVWLPVVCYELYLGNVTNAIVIALYSIIIIATLADNGVK 292

Query: 298 P--------FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           P         L+  P+K+  +  FF ++ G+ + G  G+ +GP + AL   + +  
Sbjct: 293 PFVIAFINRILIETPVKINEMLIFFAIIAGLSSFGFWGIVLGPAITALFIAMLRIY 348


>gi|145592845|ref|YP_001157142.1| hypothetical protein Strop_0279 [Salinispora tropica CNB-440]
 gi|145302182|gb|ABP52764.1| protein of unknown function UPF0118 [Salinispora tropica CNB-440]
          Length = 423

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 96/288 (33%), Gaps = 7/288 (2%)

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++   + +  L  +     L + E +  + +  +      R + +            +  
Sbjct: 130 LATAVVLVGGLAAVIGTLTLVVNEFIQGLPVLGEKSSQGVRQIQNWLRSGPLRLEDEQLD 189

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            +   ++           ID +   A        +     I ++ A FFF RDG  I + 
Sbjct: 190 RYINDVEGWLNE-----NIDGLTSGALSTAATVAEVLTGTILVLFATFFFLRDGNRIWRF 244

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L  L             R   + + +      ++A  + L +G    +  +P  + L  +
Sbjct: 245 LVRLMPVNARWKVDDAGRASWQTLGAYVRATVLVACIDALGIGIFLVIFEIPFALPLAAL 304

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + + IP  GA +S     +  L+      A  +         +    L+P ++G  + 
Sbjct: 305 VFLASFIPIIGATLSGGVAVLVALVDSGPITALIILGVVIGVQQLEGHVLQPLIMGRAVA 364

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENK 353
           +  L    G+  GV   G+ G  I  P++  L   + + +   + E  
Sbjct: 365 IHPLAVIVGIAAGVVLAGVTGALIAVPLIAVLNTAVRRLAARTVPETP 412


>gi|52142187|ref|YP_084642.1| permease [Bacillus cereus E33L]
 gi|51975656|gb|AAU17206.1| conserved hypothetical protein; possible permease [Bacillus cereus
           E33L]
          Length = 376

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 121/326 (37%), Gaps = 5/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + FLK  F PVL A ++ +   P + S + KK  S         + V+ LF+
Sbjct: 44  ISFVFTPFIVFLKTIFFPVLLAGVLFYILHP-FVSLLEKKGVSRIVSIASIYLIVIGLFV 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +L +      ++  L+  +           R      G         ++L+   +  +
Sbjct: 103 FLVLTVIPIIKNQIDALIDNLPYFGHEIERAARRF----GESNLLGKIQENLNIDVASMV 158

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   T  +  +    + F     +  L+ + +   LF+  +DG  +           
Sbjct: 159 KDYTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQ 218

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +I   +   I S   G  I+++  G++L   Y + G+   V L ++  I+ ++P
Sbjct: 219 RQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVP 278

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI     ++ +    +      + +   +      K + P ++G  + +  +   F 
Sbjct: 279 YVGPIIAITPALIIAFIDSPGMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFI 338

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++      G++G+ +     A++ V+
Sbjct: 339 ILTAGNLFGIMGIILAIPGYAILKVL 364


>gi|58698754|ref|ZP_00373638.1| hypothetical protein WwAna1163 [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225630700|ref|YP_002727491.1| hypothetical protein WRi_009930 [Wolbachia sp. wRi]
 gi|58534727|gb|EAL58842.1| hypothetical protein WwAna1163 [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225592681|gb|ACN95700.1| hypothetical protein WRi_009930 [Wolbachia sp. wRi]
          Length = 354

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 57/351 (16%), Positives = 128/351 (36%), Gaps = 13/351 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS-----T 60
           +  + I    I+  I+  L+ ++    P L +++I +   P+   F   +   S      
Sbjct: 1   MQKRHITICFILLFIIGMLFLMRPMIFPCLISVVIAYLFNPLVVKFEKYRIPRSCSVIFI 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            L ++    ++  F++P++++    +L    LVSKV       IP      +I       
Sbjct: 61  ILILLIAFILVITFVLPIIYVQITSILNF--LVSKVPSLKLKVIPSVLEFLNIKIEDSLF 118

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +  +K+L+   S  +        N +D    F  +      +    ++   +  F+  RD
Sbjct: 119 DHLSKNLAENYSNYVS----YFMNALDIASNFIIQVLSSSFNTVSLMVITPVVFFYILRD 174

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I ++   L    +          V  +I +   G   + I   +    +  + G+  
Sbjct: 175 WPLIIEKASKLIPIPYRGKIADYFSKVDFIISNYLKGQVNVCIVMMVFYSVSLSIIGLEH 234

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRP 298
            + +G+++ ++  IP   P+ +T +     I      F +  + L   +   I    L P
Sbjct: 235 SIVIGILSGMLTFIPYVGPLLYTIIGFLSAITQFSGWFESAAVLLLFGVGQLIDSNILVP 294

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            L+G  + +       G+       G  G+ +   ++A+  V  + +I   
Sbjct: 295 LLIGKKVHIHPTVIILGITICASYFGFTGILLFIPIIAMFNVSVEYAINKY 345


>gi|256826953|ref|YP_003150912.1| putative permease [Cryptobacterium curtum DSM 15641]
 gi|256583096|gb|ACU94230.1| predicted permease [Cryptobacterium curtum DSM 15641]
          Length = 405

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/347 (12%), Positives = 122/347 (35%), Gaps = 7/347 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I   +++++    L  L       +   +I F    + +  +            ++ V +
Sbjct: 39  IGSIVLLYLCGQVLTILAVPVGIAVWTAVIVFCLRNVVNRLVRYMP--RAVAVSLSYVLM 96

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +F + +  +         +  S +    Q    + RW +++ G         +     
Sbjct: 97  IVVFGLVVWLMSSPFFGIGAQFSSIIESTPQLAGEISRWYTELSGTYPDIMQSPQVAQWL 156

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
             ++    T+ +      I   AS  G    +  + I F ++  ++   D  ++ ++   
Sbjct: 157 VDIQNSLITWTQQAASSGISGLAS-VGASAANSFICIGFALVVAYWVLLDAPAMGREAYR 215

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +      A  + I     +V+     G  +  +   ++    +++ GVP+ +A  +I  I
Sbjct: 216 ICGDAHAAELRFIHETFTRVVGGFIQGTLLQCLIIMVLCMIVFFVLGVPNAMAFALICGI 275

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + +IP   P      +    +    ++A    ++      +V   + P ++   + +  +
Sbjct: 276 LNIIPVVGPWLGGVAAALAALSVGPWSALLSLVFTIAIQQVVYTFVSPKIMSSSVDVHPM 335

Query: 311 PTFFGLVG----GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                ++     G +  G +G   G +L   +A   K  I+ + E +
Sbjct: 336 IVIMAMMCGSALGAQMSGFMGSITGMLLSIPLAAFAKALIVHVLERR 382


>gi|295704012|ref|YP_003597087.1| putative membrane protein YueF [Bacillus megaterium DSM 319]
 gi|294801671|gb|ADF38737.1| putative membrane protein YueF [Bacillus megaterium DSM 319]
          Length = 363

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 56/326 (17%), Positives = 116/326 (35%), Gaps = 5/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+ L    F+   F P+L A  + F   PI S    KK    T   ++  V  + +  
Sbjct: 26  ISFVFLPIGVFISTLFFPILVAGFLFFLFEPIVSFLTRKKVP-KTLAILLLYVVFIGVIA 84

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +  +      ++ +L   +             LS+     W  E     L H +   +
Sbjct: 85  SIVGGVGPTLSKQLTDLAKNIPSYIVETRKYINDLSNSRWFNWLVEQKYVSLDHIEESLL 144

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              + L TN  + I    S    I     L+++ +   LF+  +D   + +    +    
Sbjct: 145 NYASTLPTNLTNSISSVLSVVTNIT----LTVVTVPFILFYMLKDSHKLRKNTLRMVPAS 200

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +  +     + +   G  ++ +  G+     Y + G+P  + L +I A+  +IP
Sbjct: 201 YRKETLRTMKETTNTLATYIQGQMLVCLFVGISTFIGYLIIGLPYALILALIGALTNIIP 260

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I   +    + P ++G  +    L     
Sbjct: 261 YVGPFIGVAPALIVGLLYSPTKAILVIIVVVIVQQLDGNIISPLVIGKKLNTHPLTIIIL 320

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           L+      G+LG+ +     A+   I
Sbjct: 321 LLVAGNIAGILGMILAIPAYAVTKTI 346


>gi|269138449|ref|YP_003295149.1| putative permease [Edwardsiella tarda EIB202]
 gi|267984109|gb|ACY83938.1| putative permease [Edwardsiella tarda EIB202]
 gi|304558475|gb|ADM41139.1| Putative permease PerM [Edwardsiella tarda FL6-60]
          Length = 359

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 52/355 (14%), Positives = 123/355 (34%), Gaps = 16/355 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +PQ I    I+ +    +YF  G  AP+L A+++ +   WP +   +     S  
Sbjct: 10  RRRFTDPQAIALLTILLVGFCIIYFFNGILAPLLVAIVLAYLLEWPTHK--LQLVGCSRL 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWA 119
           +   +  +  + + ++ +L +      +   L+S +  +  +            P  M A
Sbjct: 68  WAVCVVLLLFIGIVLLTMLVVIPIAWQQGLALMSDMPKMVTRFYEYAATLPRRYPALMDA 127

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
             +     +    + ++ E+ LK +    +           +   + ++ + + +FF  +
Sbjct: 128 GIIDVVVENLRARMALMGESVLKFSLASLV---------GLVTLAIYLVLVPLMVFFLLK 178

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D   +   L  +         +     + + I +   G  +  +  G+     + + G+ 
Sbjct: 179 DKGQMLNALRRVLPRERGLAGQVWLE-MNQQITNYIRGKVVEMLVVGVATYLVFLVLGLN 237

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTLR 297
             + L V+  +  +IP  GA +    V +  L +  +      LF+   +   +    L 
Sbjct: 238 YGLLLAVLVGVSVLIPYIGAVLVTIPVVLVALFQWGMGADFWSLFIAYLVVQGLDGNVLV 297

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           P L    + L  L     ++      G  G+F    L  L+  +          +
Sbjct: 298 PLLYSEAVNLHPLVIILSVIIFGGLWGFWGVFFAIPLATLVKAVIHAWPDDFGND 352


>gi|229591908|ref|YP_002874027.1| putative transmembrane protein [Pseudomonas fluorescens SBW25]
 gi|229363774|emb|CAY51192.1| putative transmembrane protein [Pseudomonas fluorescens SBW25]
          Length = 357

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 125/343 (36%), Gaps = 14/343 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + ++ V ++ L     P L AL++ +   P+      K   S T+  V        +   
Sbjct: 13  VVLLCVFVFLLHSILTPFLVALLLAYLFDPVVDRLE-KAGLSRTWGVVAVFALFTLIITA 71

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLK 134
            +L L      ++  L             +  WL    +P       L        +   
Sbjct: 72  LVLVLVPMLAKQLFRLYELA-------PQMLDWLQHTAMPWAQAKLGLADGFWKFDKVKA 124

Query: 135 ILSETFLKT-NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            +SE   +T + +  I   A+   +  + +  +++ + +  F+  RD   +  ++ SL  
Sbjct: 125 AISEHMGQTTDIVGVILSQATASSLALIGWLTNLVLIPVVAFYLLRDWDIMMAKIRSLLP 184

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                    ++    +V+ +   G  ++ +  G++  +     G+   + +G+I  + A+
Sbjct: 185 RNREERIVSLAEECHEVLGAFVRGQLLVMLALGIIYAAGLMAIGLELGLLIGLIAGLAAI 244

Query: 254 IPGGAPISFTAVSI---YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +P    +     ++        G+++    +     +   +    L P LVG  I L  +
Sbjct: 245 VPYMGFVIGIGAALVAGLFQFGGDLYPMLGIVAVFMVGQALEGMVLTPLLVGDRIGLHPV 304

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              F ++ G    G  G+ +   + A+I V+ +      K+++
Sbjct: 305 AVIFAILAGGELFGFTGILLALPVAAVIMVLVRHVHDLYKDSE 347


>gi|227554814|ref|ZP_03984861.1| possible permease [Enterococcus faecalis HH22]
 gi|229546528|ref|ZP_04435253.1| possible permease [Enterococcus faecalis TX1322]
 gi|229548646|ref|ZP_04437371.1| possible permease [Enterococcus faecalis ATCC 29200]
 gi|307269734|ref|ZP_07551064.1| hypothetical protein HMPREF9498_01861 [Enterococcus faecalis
           TX4248]
 gi|307272513|ref|ZP_07553766.1| hypothetical protein HMPREF9514_01277 [Enterococcus faecalis
           TX0855]
 gi|307274712|ref|ZP_07555884.1| hypothetical protein HMPREF9521_00331 [Enterococcus faecalis
           TX2134]
 gi|307284538|ref|ZP_07564700.1| hypothetical protein HMPREF9515_02473 [Enterococcus faecalis
           TX0860]
 gi|307289607|ref|ZP_07569551.1| hypothetical protein HMPREF9505_02968 [Enterococcus faecalis
           TX0109]
 gi|307296548|ref|ZP_07576370.1| hypothetical protein HMPREF9509_03208 [Enterococcus faecalis
           TX0411]
 gi|312900294|ref|ZP_07759606.1| conserved hypothetical protein [Enterococcus faecalis TX0470]
 gi|312904281|ref|ZP_07763443.1| conserved hypothetical protein [Enterococcus faecalis TX0635]
 gi|312953084|ref|ZP_07771934.1| conserved hypothetical protein [Enterococcus faecalis TX0102]
 gi|227176113|gb|EEI57085.1| possible permease [Enterococcus faecalis HH22]
 gi|229306277|gb|EEN72273.1| possible permease [Enterococcus faecalis ATCC 29200]
 gi|229308340|gb|EEN74327.1| possible permease [Enterococcus faecalis TX1322]
 gi|306496021|gb|EFM65607.1| hypothetical protein HMPREF9509_03208 [Enterococcus faecalis
           TX0411]
 gi|306499421|gb|EFM68794.1| hypothetical protein HMPREF9505_02968 [Enterococcus faecalis
           TX0109]
 gi|306503215|gb|EFM72469.1| hypothetical protein HMPREF9515_02473 [Enterococcus faecalis
           TX0860]
 gi|306508641|gb|EFM77739.1| hypothetical protein HMPREF9521_00331 [Enterococcus faecalis
           TX2134]
 gi|306510798|gb|EFM79815.1| hypothetical protein HMPREF9514_01277 [Enterococcus faecalis
           TX0855]
 gi|306513844|gb|EFM82446.1| hypothetical protein HMPREF9498_01861 [Enterococcus faecalis
           TX4248]
 gi|310628993|gb|EFQ12276.1| conserved hypothetical protein [Enterococcus faecalis TX0102]
 gi|310632377|gb|EFQ15660.1| conserved hypothetical protein [Enterococcus faecalis TX0635]
 gi|311292655|gb|EFQ71211.1| conserved hypothetical protein [Enterococcus faecalis TX0470]
 gi|315025697|gb|EFT37629.1| conserved hypothetical protein [Enterococcus faecalis TX2137]
 gi|315029067|gb|EFT40999.1| conserved hypothetical protein [Enterococcus faecalis TX4000]
 gi|315034473|gb|EFT46405.1| conserved hypothetical protein [Enterococcus faecalis TX0027]
 gi|315145308|gb|EFT89324.1| conserved hypothetical protein [Enterococcus faecalis TX2141]
 gi|315146984|gb|EFT91000.1| conserved hypothetical protein [Enterococcus faecalis TX4244]
 gi|315154004|gb|EFT98020.1| conserved hypothetical protein [Enterococcus faecalis TX0031]
 gi|315156647|gb|EFU00664.1| conserved hypothetical protein [Enterococcus faecalis TX0043]
 gi|315157763|gb|EFU01780.1| conserved hypothetical protein [Enterococcus faecalis TX0312]
 gi|315162015|gb|EFU06032.1| conserved hypothetical protein [Enterococcus faecalis TX0645]
 gi|315164523|gb|EFU08540.1| conserved hypothetical protein [Enterococcus faecalis TX1302]
 gi|315170734|gb|EFU14751.1| conserved hypothetical protein [Enterococcus faecalis TX1342]
 gi|315173965|gb|EFU17982.1| conserved hypothetical protein [Enterococcus faecalis TX1346]
 gi|315575328|gb|EFU87519.1| conserved hypothetical protein [Enterococcus faecalis TX0309B]
 gi|315578722|gb|EFU90913.1| conserved hypothetical protein [Enterococcus faecalis TX0630]
 gi|315581495|gb|EFU93686.1| conserved hypothetical protein [Enterococcus faecalis TX0309A]
 gi|327534290|gb|AEA93124.1| putative permease [Enterococcus faecalis OG1RF]
 gi|329576852|gb|EGG58337.1| hypothetical protein HMPREF9520_01311 [Enterococcus faecalis
           TX1467]
          Length = 404

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 54/334 (16%), Positives = 113/334 (33%), Gaps = 7/334 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F    FAPVL A  + +   P+ +  + K +    +  ++  + ++   ++ LL +    
Sbjct: 63  FFSTLFAPVLVAGFLYYLLNPVVN-LLMKTKMKRIYAVLLVFLLLIIALVLILLTIIPKL 121

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++  L S +    +        ++++P            L+       +S   +    
Sbjct: 122 ADQLASLASSMPDFFKQVETWIYEIAELPIFKQID------LTSYIEKMDISYANIIQQF 175

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +               + ++     LF+  +DG  +   +              +  
Sbjct: 176 LSSLSSSLGSIVSTVASTTIVLVTAPFILFYMLKDGDKLVPAIQRFLPEKRKDDIVDLLG 235

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + + + S   G  I  +  G      Y L GV      GVI     +IP   P    A 
Sbjct: 236 QLNQTLSSYISGQAIECLFVGTFTIIGYSLLGVRYAFLFGVIAGFTNLIPYLGPYLGLAP 295

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + I      A    L   +   +    + P ++G  +K+  L     L+      GL
Sbjct: 296 AVLVTIFNEPVKAALCCLVVLVVQQLDGNIIYPNVIGKSLKIHPLTIILILLVAGNLAGL 355

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           LG+F+G    A+   I    I  +K  + +  +N
Sbjct: 356 LGIFLGVPFYAICRTIIYYVIDMVKAGRSEKVTN 389


>gi|163792846|ref|ZP_02186822.1| hypothetical protein BAL199_23694 [alpha proteobacterium BAL199]
 gi|159181492|gb|EDP66004.1| hypothetical protein BAL199_23694 [alpha proteobacterium BAL199]
          Length = 369

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/334 (14%), Positives = 111/334 (33%), Gaps = 13/334 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
             Y L+    P ++ + + +   P+       +         I  +    L I  LL L 
Sbjct: 20  GFYVLRDVLVPFVAGMAVAYLLDPVVDRLERVRVPR-GLATFIVLLGFFALAIGLLLLLI 78

Query: 83  YYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
                + ++L S +    +   I +   L+ +  G+       K       L   +   +
Sbjct: 79  PLLQSQFEKLASTLPGYVDMVRIRLAPLLAHVNEGLDRQAALQKVTGMTGDLVSWAGGVI 138

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                          G    +    ++   I  F+  RD   I   +D           +
Sbjct: 139 SRVISG---------GFAIANLLSLLLITPIVSFYLLRDWDRIVAAVDGWLPREQAPMIR 189

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
                V + + +   G   + +  G+       +AG+   + +G+ + +++ +P    + 
Sbjct: 190 SQVAAVDRTLAAFVRGQGTVCLILGVFYAVGLTVAGLNFGLVIGLFSGLISFVPFIGALL 249

Query: 262 --FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
               +V + L    +      +    A    +    L P LVG  + L  +   FGL+ G
Sbjct: 250 GGVLSVGLALAQFDSWQAVAIVAAVFAAGQMLEGNFLTPNLVGEAVGLHPVWVIFGLLAG 309

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               G +G+ +   + A+I V+ + ++    ++ 
Sbjct: 310 GTLFGFVGVLLAVPVAAVIGVLTRFALAQYLDSP 343


>gi|110803430|ref|YP_699190.1| hypothetical protein CPR_1880 [Clostridium perfringens SM101]
 gi|110683931|gb|ABG87301.1| putative membrane protein [Clostridium perfringens SM101]
          Length = 372

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 55/341 (16%), Positives = 118/341 (34%), Gaps = 16/341 (4%)

Query: 27  LKGFFA---PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           ++ F +   P   A  + +   P+        +    F  +I+ + V+    + +  +  
Sbjct: 36  IRPFLSVLTPFFWAFGVAYLINPLMMLIEKSFKLKRAFSLMISYILVIICVYILIAIIVP 95

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                + EL S +   +++      W++     M    L   HL+   +  I   + L +
Sbjct: 96  TIFDSLSELFSNL---SEYASSAESWINSTLASMNV-PLDLNHLNTSATEFISKTSTLLS 151

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK- 202
           N +  +     +     + +    I  I    +   D  ++      +   + P+     
Sbjct: 152 NIVGSLLTQTIKITSSVVKFVFGFIISI----YMLMDKETLIGGCKKIIIAVMPSEKSSE 207

Query: 203 ----ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
                      +     +G  I ++  G++      L G    V +  I  +  MIP   
Sbjct: 208 LFISFMAEAHNIFSRFIIGKIIDSLIIGVLCYIGLLLMGTQYAVLISFIVGLTNMIPYFG 267

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P      +  L +      A  + L+  I        L P ++G  + +  L   F +  
Sbjct: 268 PFIGMIPAFLLTLIVQPSMAIWVLLFIFILQQFDGWYLGPKILGDQVGVSPLFIIFAVTV 327

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G    G+LG+F+   ++ALI +  ++ I    ENK++   N
Sbjct: 328 GGGIFGVLGMFLSVPIIALIKIYTEKLIEYRLENKKQNLKN 368


>gi|145221061|ref|YP_001131739.1| hypothetical protein Mflv_0457 [Mycobacterium gilvum PYR-GCK]
 gi|315441968|ref|YP_004074847.1| permease [Mycobacterium sp. Spyr1]
 gi|145213547|gb|ABP42951.1| protein of unknown function UPF0118 [Mycobacterium gilvum PYR-GCK]
 gi|315260271|gb|ADT97012.1| predicted permease [Mycobacterium sp. Spyr1]
          Length = 383

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 56/352 (15%), Positives = 122/352 (34%), Gaps = 18/352 (5%)

Query: 13  RWMIMFIILVSLYFL----KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           R +++F  +V+L +L    +    PV  A II     P+   F+ ++         +  +
Sbjct: 28  RLLVIFAAIVTLLWLVLRLEILVVPVALATIIAALLLPVVD-FLDRRGAPRGGAVALVLL 86

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +   LF   L F+    +    +LV +V  + +    V +WL+D P  +   ++     +
Sbjct: 87  TGFALFGGLLAFVVTQFVEGAPDLVGQVSTSIEG---VGKWLTDGPLQVSDQQINQARDT 143

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             ++L+   E          +   A        +     + +   L F    G +I   +
Sbjct: 144 AIEALQSNQEK---------LTSGALSTAGTLTEIVTGALLVFFTLIFLLHGGRNIFSFV 194

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +             R   + +        ++A  + + +G    + GVP  + L  + 
Sbjct: 195 TRIFPSHVRGRVHDAGRAGFRSLIGYVRATFLVAAVDAIGIGVGLAIMGVPLALPLASLV 254

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A +P  GA ++     I  LI      A            +    L+P ++G  + +
Sbjct: 255 FMGAFVPLVGAVVTGFLAVIVALIAKGWIYALITLGLIIAVQQLEGHVLQPLVMGRAVAI 314

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             L     + GG    G++G  +   ++A +    +         +E+    
Sbjct: 315 HPLAIVLAIAGGAVLAGIVGALLAVPVLAFLNSAIRVLTADDPVAEEQAMEE 366


>gi|167760610|ref|ZP_02432737.1| hypothetical protein CLOSCI_02992 [Clostridium scindens ATCC 35704]
 gi|167661735|gb|EDS05865.1| hypothetical protein CLOSCI_02992 [Clostridium scindens ATCC 35704]
          Length = 386

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 51/356 (14%), Positives = 121/356 (33%), Gaps = 10/356 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSF-----ISKKEESSTFLAVIATVS 69
           +++ ++    + +  F      A I+      I         + + +        ++ + 
Sbjct: 30  VVVSVLAFIFHVIFPFVLGGAIAFILNVPMNFIQRHLFAPERVERHKIQKKIARPVSMLI 89

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHLS 128
           V+      +  + +  + ++ +  S +  + Q  IP V  W   +         W   L 
Sbjct: 90  VIFGVFGIVALVMFVLIPQLGDTFSNLGSSIQAFIPKVQEWAEKLFHDNKEIMTWVNSLK 149

Query: 129 HPQSLKILSETFLKTNGIDFIP----RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
              +  + +      NG   +       A         + ++ +F +  L    + G   
Sbjct: 150 FDWNKIMGAGIDFFKNGAGSVLDSTITAAKSIVSGITTFFIAFVFAVYILLQKEKLGIQA 209

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + L +           ++  +      S   G  + AI  G +      L  +P  + +
Sbjct: 210 KKVLFAFVRKGRAEAAMEVLSLTYNTFSSFLTGQCLEAIILGSMFVVTMTLFKLPYALLV 269

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           G++ A  A+IP        AV  +L+   + F A    +   I   I    + P +VG  
Sbjct: 270 GIVIAFTALIPIFGAFIGCAVGAFLIFMVDPFKALIFVILFLILQQIEGNLIYPHVVGNS 329

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           + LP +     +  G   MG++G+ I   +++++  +++E +      K+      
Sbjct: 330 VGLPSIWVLAAVSIGGSLMGIVGMLIFIPIISVVYALFREIVYLKLRQKKINPKEL 385


>gi|52081609|ref|YP_080400.1| hypothetical protein BL02577 [Bacillus licheniformis ATCC 14580]
 gi|52786989|ref|YP_092818.1| YubA [Bacillus licheniformis ATCC 14580]
 gi|52004820|gb|AAU24762.1| hypothetical protein BL02577 [Bacillus licheniformis ATCC 14580]
 gi|52349491|gb|AAU42125.1| YubA [Bacillus licheniformis ATCC 14580]
          Length = 381

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/342 (14%), Positives = 120/342 (35%), Gaps = 5/342 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           FI    +  ++    PV+   ++ +   PI   F+  K     +  ++  + ++ L  + 
Sbjct: 42  FIFTPFIVLVETIALPVVLTGVVYYLLNPIVD-FLEWKNVKRIYSILLLYIVIIGLITIS 100

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           ++ +      ++  LV            V   +  + G  + +++      +   L    
Sbjct: 101 IVSVIPLLREQITSLVDNFPRYVHI---VEDQIKQLIGSQFFNQVQQTMNINLTDLASKL 157

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
                T          +  G +  +  +SI+ +   LF+  +DG  +   +  L      
Sbjct: 158 SDQATTILNSTFTGVGTFIGAVT-EVVISIVTVPFILFYLLKDGKKLPLFILKLIPVRLR 216

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   +   + S   G  I++   G +L   Y + G+     L ++ A  +++P  
Sbjct: 217 EQTYVMMSEMNHRLSSYIRGQIIVSFCIGCLLFIGYMIIGLDYASLLALVAACTSIVPYL 276

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P      +I + +  + F    L +   +      K + P ++G  + +  +   F L+
Sbjct: 277 GPTIAITPAIIIALVTSPFMLVKLIIVWTVVQLFEGKFISPQIMGKNLHIHPVTIIFVLL 336

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              +  G++G+ +     A+I V+        K+       N
Sbjct: 337 TAAKLFGVIGVILAIPGYAVIKVVVTHLFEWFKQRSHLYEKN 378


>gi|298346059|ref|YP_003718746.1| integral membrane protein [Mobiluncus curtisii ATCC 43063]
 gi|298236120|gb|ADI67252.1| integral membrane protein [Mobiluncus curtisii ATCC 43063]
          Length = 487

 Score = 86.8 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 100/298 (33%), Gaps = 11/298 (3%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           P++     K     T  A+I+ +  + L +  +             L+ K        + 
Sbjct: 105 PMHLRL-QKWHIPKTLSAIISLLVGVGLVVAMIWIATSQLAHGAPALLVKAGGGFDKAL- 162

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
              WLSD P  +   ++          +   +  +  +     +   +S   ++      
Sbjct: 163 --AWLSDGPLKLDQEQIEKYIHELTAQITAFATKYSSSIASSALSVTSSVASVVTT---- 216

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
            I+  +  LFFF +DG  I   L  +          + +      +        ++A+ +
Sbjct: 217 -ILISLFCLFFFLKDGRQIWIWLIRMLPVPAREPVHEAAIRGWTTLNGYIRAQAVVALVD 275

Query: 226 GLVLGSAYWLAGVPSHVA-LGVITAIMAMIPGGAPISFTAVSI-YLLIKGNIFNATCLFL 283
            + +     + G  S    L ++  I A IP    ++  A+++  LL+      A  + +
Sbjct: 276 SVFISIGAAVLGAGSMTIPLALLIFIGAFIPIVGAVTTGAIAVLILLLDKGFMAAVIMLI 335

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                  I    L P L+   + L  L    G+  G    G++G  +   ++A    +
Sbjct: 336 VILAVQQIESNVLHPMLMSSAVNLHPLAVLLGVTAGTFLAGIIGALLVVPVIAFFNTV 393


>gi|304390182|ref|ZP_07372136.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304326664|gb|EFL93908.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 487

 Score = 86.8 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 100/298 (33%), Gaps = 11/298 (3%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           P++     K     T  A+I+ +  + L +  +             L+ K        + 
Sbjct: 105 PMHLRL-QKWHIPKTLSAIISLLVGVGLVVAMIWIATSQLAHGAPALLVKAGGGFDKAL- 162

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
              WLSD P  +   ++          +   +  +  +     +   +S   ++      
Sbjct: 163 --AWLSDGPLKLDQEQIEKYIHELTAQITAFATKYSSSIASSALSVTSSVASVVTT---- 216

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
            I+  +  LFFF +DG  I   L  +          + +      +        ++A+ +
Sbjct: 217 -ILISLFCLFFFLKDGRQIWIWLIRMLPVPAREPVHEAAIRGWTTLNGYIRAQAVVALVD 275

Query: 226 GLVLGSAYWLAGVPSHVA-LGVITAIMAMIPGGAPISFTAVSI-YLLIKGNIFNATCLFL 283
            + +     + G  S    L ++  I A IP    ++  A+++  LL+      A  + +
Sbjct: 276 SVFISIGAAVLGAGSMTIPLALLIFIGAFIPIVGAVTTGAIAVLILLLDKGFMAAVIMLI 335

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                  I    L P L+   + L  L    G+  G    G++G  +   ++A    +
Sbjct: 336 VILAVQQIESNVLHPMLMSSAVNLHPLAVLLGVTAGTFLAGIIGALLVVPVIAFFNTV 393


>gi|229820773|ref|YP_002882299.1| protein of unknown function UPF0118 [Beutenbergia cavernae DSM
           12333]
 gi|229566686|gb|ACQ80537.1| protein of unknown function UPF0118 [Beutenbergia cavernae DSM
           12333]
          Length = 418

 Score = 86.8 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 54/315 (17%), Positives = 108/315 (34%), Gaps = 13/315 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F  V  AL++     P  S              V+A +S +  F   L ++ Y    +  
Sbjct: 90  FIAVFLALVVTSVLEPFVSWLSRWMP--RAIATVVAMLSAIVFFAGLLTYVVYSVAGQWT 147

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           +L  +          +    S++P  + A ++                 +L  +  +   
Sbjct: 148 DLAKQFNDGIGQIFDLLEN-SNLPITITADDI--------NDWIETGRQWLVDHSGELAG 198

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
           +  +  G +F  + + +        FF   G  + +   +             +      
Sbjct: 199 QVFANAGGVFEAFTI-LALGTFVTIFFLVSGARMWRWFLNELPSRSRLTVHGAAGAGWYT 257

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
                 G  IIA+ +G++      + GVP    L V+  I A IP     +   ++  + 
Sbjct: 258 FSGYARGTVIIAVIDGVLAYILLVIVGVPLAAPLAVLVFIGAFIPLIGAPAAMIIAAIVA 317

Query: 271 IKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           +  N F    +   G   +  V+   L+P ++G  + L  +    G+  G    GLLG  
Sbjct: 318 LAANGFWPAVIVTIGIAGIGQVEGHILQPLVMGKQVSLHPVVVALGVTAGTFLGGLLGAV 377

Query: 330 IGPVLMALIAVIWKE 344
           I   L+A+I  ++ +
Sbjct: 378 IAIPLIAVIWTVYSK 392


>gi|295399501|ref|ZP_06809483.1| sporulation integral membrane protein YtvI [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978967|gb|EFG54563.1| sporulation integral membrane protein YtvI [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 372

 Score = 86.8 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 62/344 (18%), Positives = 126/344 (36%), Gaps = 12/344 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             I+ +  ++LY++     P + A  I F   P+     +K +       V+  + +  L
Sbjct: 16  IAIVVLGAIALYYVSTVIYPFIIAFFIAFFINPLVDFLETKAKMPRWLAVVVTLIVLFAL 75

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL---SDIPGGMWASELWTKHLSHP 130
               +  L    +   + L + V    Q  +           IP     + L+    +  
Sbjct: 76  VAGLVTLLIAEIVSGTQYLANVVPENFQKLVKYIETFFAQQIIPLYHDLAALFKNLDASQ 135

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL-------SIIFMIIALFFFYRDGFS 183
           Q   + +   + T     + +F  R                   IF ++A FF  +D + 
Sbjct: 136 QDTIMNNIQAVGTQIATTVGQFTQRVLQNIPQLLTWLPNAATVFIFSLLATFFISKDWYR 195

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           ++  +  +         K++   + K +         +     +++     + GV   + 
Sbjct: 196 LTGMVQKILPAKAHKSGKRVFLDLKKALFGFIKAQATLISITTVIVLIGLLILGVDYAIT 255

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           + +I  ++ ++P  G  I F    IY  I GNI  A  L +   I L +  + + P ++ 
Sbjct: 256 IALIIGLVDILPYLGTGIVFVPWIIYAAISGNIPFAIGLGVLYIIVL-VQRQIMEPKVLS 314

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
             I L  L T   L  G + +G LGL +GPV + +I  +   ++
Sbjct: 315 SSIGLDPLATLVALFVGFKLIGFLGLIVGPVTLVIIRTLHSANV 358


>gi|256785494|ref|ZP_05523925.1| integral membrane protein [Streptomyces lividans TK24]
 gi|289769390|ref|ZP_06528768.1| integral membrane protein [Streptomyces lividans TK24]
 gi|289699589|gb|EFD67018.1| integral membrane protein [Streptomyces lividans TK24]
          Length = 466

 Score = 86.8 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 110/320 (34%), Gaps = 23/320 (7%)

Query: 17  MFIILVSLYFLKGFFAPV-------LSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           + ++  +++ L    + V       ++AL+I     P  +             A+ A + 
Sbjct: 94  LLVLAGTVWVLMRVISAVQLVVLAFVAALLITALLQPAVAWLRRHGVPRGPATALTAILG 153

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMWASELWTKHLS 128
            +      +  + ++   ++ E +  +    Q GI   R WL + P  +   ++     +
Sbjct: 154 FVV-----MGLIGWFVTWQVMENIDNLSDQVQDGIDELRNWLLNSPFHVTDKQINEIAKN 208

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              ++   ++                    + ++    I+    +  F   DG  I Q  
Sbjct: 209 LRDAVGANTDQITSAGLEGV---------TVVVEALTGILLAAFSTLFLLYDGKRIWQWS 259

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L                 + + +   G  I+A+ + + +G   +   VP  V L V  
Sbjct: 260 LKLVPAAARPGVAGAGPRAWRTLTAYVRGTVIVALIDAIFIGLGIYFLDVPMAVPLAVFI 319

Query: 249 AIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A IP    +   A+++ + L+   +F A    +       I    L+PF++G  +++
Sbjct: 320 FLFAFIPLVGAVVSGALAVVVALVTQGVFAAVMTLVVVLAVQQIEGHILQPFILGRAVRV 379

Query: 308 PFLPTFFGLVGGVRTMGLLG 327
             L     +  G    G+ G
Sbjct: 380 HPLAVVLSVAAGGMVAGIGG 399


>gi|261885879|ref|ZP_06009918.1| acid membrane antigen A [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 281

 Score = 86.8 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 86/221 (38%), Gaps = 12/221 (5%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +  +A        ++ + I F+++ LFF +         +  +   +     + I   V 
Sbjct: 63  VLSYAKGSLEKSANFLIDISFIMLFLFFSHFYANFFKSYIKKVSP-IAKYELEAIFSEVA 121

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSI 267
             +   F       I +G +        G    +  GV+ A  ++IP  G  + +  +S+
Sbjct: 122 NTMSVVFYSTIANMILQGFLFAIIASFYGFDG-LLFGVLFAFSSLIPVVGGALVYIPLSV 180

Query: 268 YLLIKGNIFNATCLFLWGAIELF-IVDKTLRPF--------LVGGPIKLPFLPTFFGLVG 318
           +    G+   A  + ++  + +  + D  ++P         L+  P K+  L  FF ++ 
Sbjct: 181 FEFSLGDTKAAIIILVYSIVVISTLADNFVKPLVIKFINEKLLKTPAKMNELLIFFSMLA 240

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G+ + G  G+ +GP ++ L++   +   M    + +  +  
Sbjct: 241 GLSSFGFWGIVLGPAIVTLLSATLRVYAMLKSSDLDSKAKE 281


>gi|219853032|ref|YP_002467464.1| protein of unknown function UPF0118 [Methanosphaerula palustris
           E1-9c]
 gi|219547291|gb|ACL17741.1| protein of unknown function UPF0118 [Methanosphaerula palustris
           E1-9c]
          Length = 345

 Score = 86.8 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 55/362 (15%), Positives = 122/362 (33%), Gaps = 26/362 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M  + ++    +  +I  I +  +          + A+ +     P++  F  +     +
Sbjct: 1   MEISGISEDQKLSLLIGAIFIAVIIAFWPLMTVFVWAVALAVALMPLHKRFSRRV--KPS 58

Query: 61  FLAVIATVSVMCL--FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
             A++ T  V+ +   +V    +  Y  +E   +++  ++          +L        
Sbjct: 59  LSAMLITFGVILVTGLVVSSATIVIYADIEYIGVMAATLVKGFSRTVFATFLPTFTADQL 118

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
           ++                    +    I+ +               L +I + + L    
Sbjct: 119 SN--------------------MPHTLIEMVLNTLLSLTANPGLLLLQVIILFLTLSMLI 158

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
             G  I   +             +IS I    I S  +     A+   L+    + L G 
Sbjct: 159 YYGEQIWTSVTRNLSPKLSTVLGRISEITGNTIYSLIVIQISAALLSFLLAIPFFTLLGY 218

Query: 239 PSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATC-LFLWGAIELFIVDKTL 296
              +    +     +IP  GA +      +Y++  G+I +A   +F+   +    +D   
Sbjct: 219 GHELLFATMIGFAMLIPLVGAQLCLLFFILYMIALGDIRSAVITMFIGYPLLSGWIDFYY 278

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           RP ++   + +  +    G+  GV  MG++G  +GPVLM+L    +   I   +   E+ 
Sbjct: 279 RPVMMRRRVAVHPVFMIIGIFAGVPFMGIVGFILGPVLMSLAVTGYSIYIEQTRVPAEEQ 338

Query: 357 SS 358
            S
Sbjct: 339 ES 340


>gi|260549333|ref|ZP_05823553.1| permease [Acinetobacter sp. RUH2624]
 gi|260407739|gb|EEX01212.1| permease [Acinetobacter sp. RUH2624]
          Length = 397

 Score = 86.8 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 125/326 (38%), Gaps = 18/326 (5%)

Query: 28  KGFFAPVLSALIIGFTSWPI-----YSSFISKKEESSTFLAVIATVSVMCLFIVPLLF-L 81
           K    P L A  + +   P+               S  F+ +  T++V   ++VPL++  
Sbjct: 26  KPVVIPFLGAFFLAYLFSPLVDVLVKIKLPRWLAISIVFIGIGVTLTVALWYLVPLIWKQ 85

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
             Y    +   +  +         +  W+S         ++        +++    +T  
Sbjct: 86  LVYARDSIPAGIHWINAE------LLPWISST---FHVQQMEIDTDQMSKAVMDYVQTNY 136

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             + I  +    ++ G+ F+    +++ + I  F+F  D   + Q L  L    + A   
Sbjct: 137 SADSIQAVLLKLAQSGLNFIQIGGTLVLIPIIAFYFLLDWDRMLQNLRRLIPRPYEATTL 196

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +I R    V+ +   G  ++ +  G+V      L G+   + +G++  + ++IP      
Sbjct: 197 QIVRECHSVLGAFVKGQFLVMLLLGVVYAVGLQLIGLEVGLIIGMVAGLASIIPYLGFAV 256

Query: 262 --FTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
               A+   L   G +  +   + +   I   +    L+PFL+G  I L  +   F ++ 
Sbjct: 257 GIIAAIIASLFQFGMDWTHLLLVGVVFMIGQAVEGYILQPFLLGDKIGLSPVAVVFAVLA 316

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKE 344
           G +  G LG+ I   + A+I V+ K 
Sbjct: 317 GAQLAGFLGMLIALPVAAVIVVLLKH 342


>gi|88800192|ref|ZP_01115760.1| hypothetical protein MED297_13882 [Reinekea sp. MED297]
 gi|88777038|gb|EAR08245.1| hypothetical protein MED297_13882 [Reinekea sp. MED297]
          Length = 368

 Score = 86.8 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 55/354 (15%), Positives = 125/354 (35%), Gaps = 7/354 (1%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + + ++ +++  I  + +Y   G   P+L+A+I+ +   P+     S +        +I 
Sbjct: 19  DEEAVIVFLLFLICFILIYMFGGILTPLLAAVILSYLLSPLVDKLQSYRVPH-GLSVIIV 77

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +    + +V LL +    + ++  LVS V    +        L +    + + EL    
Sbjct: 78  FLVFFGVLLVSLLTMVPALIKQISALVSDVPGMMRTFQSQLELLPEKYPDLLSQELVGHW 137

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                  +I  +    +  +  +  F+       +   + +I + + +FF  +D   +  
Sbjct: 138 SGSLDLSQIGQQL---SAWLPNVVSFSLNTLPAIISVLIYVIVVPLMVFFILKDRDELWS 194

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
              S+          +I+  + + I +   G  I  I  G V    + L G+     L V
Sbjct: 195 GFKSMLPD-QRRLMNEIAIEMNQQIANYIRGKAIEIIIVGGVTFITFTLLGLNYAALLSV 253

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGP 304
           +     +IP  GA +    V    + +          L   + + ++D   L P L    
Sbjct: 254 LVGFSVLIPYIGATVVTIPVFAIGVFQWGFAPELYWVLIAYLVIQVLDGNVLVPLLFSEA 313

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           + L  +     ++      G  G+F    L  L+  I      ++  +  + + 
Sbjct: 314 VNLHPVSIIAAVLVFGGLWGFWGIFFAIPLATLVKAIVNAWPSSVISDPTEPAD 367


>gi|15673164|ref|NP_267338.1| permease [Lactococcus lactis subsp. lactis Il1403]
 gi|12724148|gb|AAK05280.1|AE006350_7 permease [Lactococcus lactis subsp. lactis Il1403]
          Length = 313

 Score = 86.8 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 106/290 (36%), Gaps = 3/290 (1%)

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMWASEL 122
           V+  + +  +    + +     +  +   V     +  H +   +  ++ +       + 
Sbjct: 9   VVTIIVLFLIIAALIAWGLIVAIPNIISGVDNFASSVPHYVNTAQKEINALAKNPHFEQF 68

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             +     +S+      + K   ++ +    S          +S+I     LF+  RDG 
Sbjct: 69  RPQVDQFAKSIGNQLIDWSKAFSVNAVTTL-SHLISKTTSILISLIVFPFVLFYLLRDGQ 127

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            ++  +  L  + +     K+   +   + +   G  ++AI   ++      + G+   V
Sbjct: 128 RLNGFVTHLLPNDWRKETSKVLHEINSQLSNYVRGQVLVAIAVAIMFMIGLPIIGLRYAV 187

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           AL +    + ++P  G+ ++   + I  L+ G       + +   IE  +  + + P ++
Sbjct: 188 ALAITAGFLNLVPFLGSFLAAIPMVIVGLVIGGPLMLVKVIIVLIIEQTLEGRFISPLVL 247

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           G  + +  +   F L+   + +G+ G+ +     A + VI        +E
Sbjct: 248 GKQMSIHPITILFVLLTAGQILGVWGVLLAIPFYATLKVIIVHVYEWYRE 297


>gi|323487957|ref|ZP_08093213.1| hypothetical protein GPDM_01390 [Planococcus donghaensis MPA1U2]
 gi|323398381|gb|EGA91171.1| hypothetical protein GPDM_01390 [Planococcus donghaensis MPA1U2]
          Length = 360

 Score = 86.8 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/330 (13%), Positives = 113/330 (34%), Gaps = 13/330 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS-VMCLFIVPLLFLFYYGMLEM 89
           F P+L   ++ + + P+ +  + +K     + AV+  +  ++ +F +  + +      ++
Sbjct: 41  FVPLLLGGVLFYLTRPVLNFLMKRKF--PKWAAVLTVLLSIILVFYLFFIMIGPIVTDQI 98

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             LV       Q      +++ D         L          +       L   G   +
Sbjct: 99  NALVDNAPEIIQSVEESAQYIFD-----QRERLPDSIEEQLNGMTGQIGDRLGDVGGWVV 153

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                 F   F+   ++++ +   L +   D       +          + +K    +  
Sbjct: 154 -----SFIGSFVSGIITLVLVPFFLVYLLVDHKKFVPFVSGFFSGERKGWIRKTLHDIDD 208

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            +++   G   ++   G++L   Y + G+   + L +I     +IP   P      +I +
Sbjct: 209 TLQAYIQGQLFVSFLVGIMLLIGYLIIGLDYALLLALIGMATNVIPFLGPYIAVVPAILI 268

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            +  +   A  + +   +   I    + P ++G  + +  L     ++      GL G+ 
Sbjct: 269 ALVEDPIKAVYVGIIMLVAQQIESNFITPNVMGKSLDVHPLTVITLILAAGNIAGLWGII 328

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +   + A+I  I K       E +   + +
Sbjct: 329 LAIPVYAVIKTIAKNVYARRIEIRNTATRD 358


>gi|88854466|ref|ZP_01129133.1| putative integral membrane protein [marine actinobacterium
           PHSC20C1]
 gi|88816274|gb|EAR26129.1| putative integral membrane protein [marine actinobacterium
           PHSC20C1]
          Length = 383

 Score = 86.8 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 68/174 (39%), Gaps = 1/174 (0%)

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
            LFFF +DG +I +        +      +I R   + +     G  I+A  + + +G+ 
Sbjct: 187 ILFFFLKDGDNIWEFFLRPMHGVRRERGHRIGRTAVRTLGGYVRGTAIVAAVDAVGIGAG 246

Query: 233 YWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
             +  VP  + L VI  + A IP  GA ++    ++  L+      A  +     +   +
Sbjct: 247 LLILQVPLALPLAVIVFLGAFIPLVGATVAGILAALIALVTNGWVVALIVLGIVVLVNQL 306

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
               L+P ++   + +  L     L  G    G++G  +   + A+   I K  
Sbjct: 307 EGNLLQPVVMAQSLSIHPLVILVALTAGTILGGIVGAVLSVPIAAVGWSIIKTW 360


>gi|220908099|ref|YP_002483410.1| hypothetical protein Cyan7425_2702 [Cyanothece sp. PCC 7425]
 gi|219864710|gb|ACL45049.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7425]
          Length = 358

 Score = 86.8 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 53/345 (15%), Positives = 120/345 (34%), Gaps = 22/345 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFL----KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           ++   ++R+++   +   L  L    +        A I+                    F
Sbjct: 26  ISTNALVRFLLFAAVGWVLVQLINHFQYVIFVFAFAAILAILLNYPVQYLKGFLPRR--F 83

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  +  +       L +      +++++ + +             +         S 
Sbjct: 84  ALGIVVLLSLAAIFFLALGIGVTIADQLQDIAATLTQTITSLQTPLNQVQAFLNQRNISL 143

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
             +      QSL     ++L +     +  +            +++I +++  FF   D 
Sbjct: 144 DLSPLQQQLQSLVFNGASWLVSYIPTLLGSY------------VTLIIVLVITFFMLIDE 191

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            ++ Q +  L      A   +  R V +  +    G  +I+   GL     + +  +P  
Sbjct: 192 GNLWQFILRLVPQ---AQRDRFDRSVHRSFQGFIRGQLLISFLLGLATYIVFVIFRLPFA 248

Query: 242 VALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           + L ++ A+  +IPG GA +  T   + +L++   + A  +     I   + D  L P +
Sbjct: 249 LVLSMVVAVFDLIPGIGATLGVTLACLIVLLQSGWWVALQVLAICVILQQLQDNLLAPRI 308

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +   ++L  L  FF L+ G +  GLLG+F+   +   I    +  
Sbjct: 309 MQSTVRLHPLVVFFALLVGTQIAGLLGVFLAVPVAGAIVSFLQIE 353


>gi|190891171|ref|YP_001977713.1| putative permease protein [Rhizobium etli CIAT 652]
 gi|190696450|gb|ACE90535.1| putative permease protein [Rhizobium etli CIAT 652]
          Length = 374

 Score = 86.8 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/326 (13%), Positives = 104/326 (31%), Gaps = 11/326 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  Q      ++   +  LY       P ++ + I +   P+      +   S     V 
Sbjct: 10  LKRQIFFWLAVLVFFIAFLYVFSSILLPFIAGMAIAYFLDPVADRLE-RLGLSRMMATVG 68

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             ++ + +F + L+ L    + +  +   ++               +     W       
Sbjct: 69  ILIAFVIVFALALMILIPVLISQFNDFAERLPGYISQLQQFITQTQNSLLPDWVKSQAGT 128

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
              +   +      FL       +       G   +D    ++   +  F+   D   + 
Sbjct: 129 IKDNLSGILSEGMGFLTG-----LFAQIWNSGKAIVDVISLLVVTPVVAFYILLDWDRMV 183

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            ++D      +    ++I++ + + I     G   + +  G+   +   L G+   + +G
Sbjct: 184 SKVDQWIPRDYVGDVRQIAKEIDQAIAGFIRGQGSLCLILGIYYAAGLSLVGLNFGLLIG 243

Query: 246 VITAIMAMIPGGAPIS----FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +   +++ IP    +        V+I        +    L ++ +   F+    L+P LV
Sbjct: 244 LFAGMISFIPYVGSLVGLILAVGVAIVQFWPDYPWIGLVLAVFFSG-QFLEGNILQPKLV 302

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLG 327
           G  + L  +   F L       G +G
Sbjct: 303 GSSVGLHPVWLMFALFAFGALFGFVG 328


>gi|154253766|ref|YP_001414590.1| hypothetical protein Plav_3329 [Parvibaculum lavamentivorans DS-1]
 gi|154157716|gb|ABS64933.1| protein of unknown function UPF0118 [Parvibaculum lavamentivorans
           DS-1]
          Length = 365

 Score = 86.8 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 56/312 (17%), Positives = 115/312 (36%), Gaps = 9/312 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
            +  Q I+  + + + +  L+ LKG   P ++ + I +   P+     S     S   A 
Sbjct: 2   TIQRQAIIWALFIALFVAGLWLLKGILLPFVAGMAIAYFLDPLADKLESY--GLSRLAAT 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
                V  L  + +L +    +    +L++ V +          WL  I  G     L  
Sbjct: 60  GMITIVFLLLAIVMLIVLVPVLYN--QLIALVEIFPALMRRGQEWLLTIGDGRLGRLLGV 117

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +     Q+++      L  + +  I       G+  +     I+   +  F+   D   +
Sbjct: 118 EGQDVEQAIRQSLGGSL--DWLVNILTSVGSQGLQIVALLSLIVVTPVVAFYLLLDWDRM 175

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +++D+L         ++++R + +V+     G  I+ +  G +      L G+   + +
Sbjct: 176 VERVDALLPRDHAETIRRLAREINEVLAGFIRGQVIVCLVLGTIYAVGLTLVGLRFGLIV 235

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLV 301
           G++  I++ IP    I    V + L +     +      +    AI  FI    L P LV
Sbjct: 236 GIVAGIISFIPYLGTILGFVVGLALALFQFGTDFVQVGMVIGVFAIGQFIEGNFLSPKLV 295

Query: 302 GGPIKLPFLPTF 313
           G  +KL  +   
Sbjct: 296 GDRVKLHPVWVM 307


>gi|306817850|ref|ZP_07451589.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|304649329|gb|EFM46615.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
          Length = 478

 Score = 86.8 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 54/329 (16%), Positives = 114/329 (34%), Gaps = 17/329 (5%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           F ++  L+ +   F P   AL +  T  P+    I +K       A+ A ++++ +F V 
Sbjct: 85  FAVVAGLWIIAPVFTPAFLALCMALTLHPVSQWLIRRKVP----AALAALLNIVLMFAV- 139

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
                   ML +  +++  + A    +P  +    I        L  K            
Sbjct: 140 --------MLGVTGMIAGALTAVTTELPRYQRKFQILYQDSI-HLLEKLGDRFNIDMSSV 190

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            +  +   +  +  +A            ++ +  +   F   D   + ++   L  +   
Sbjct: 191 TSPAQRVDLGRVTSYAGSLANSLGSAGTTMFYFTMLAIFLVGDLVVMRRRAAELATYAPG 250

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-G 256
                  R   +  R  FL  T    G  ++     ++  VPS +  G++  +   IP  
Sbjct: 251 LAIS--LRKFARGARMYFLMATFFGAGVAVLDIIVMYIFEVPSPLTWGILAFVANYIPAV 308

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           G  IS     + +L+   +  A  + +   +   +V   ++P   G  + L    +F  L
Sbjct: 309 GFIISMIPPVLMVLVTQGVGPAIGVAVSFIVISTVVFNFVQPRFAGSAVGLNPTISFLSL 368

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +     +G LG  +   +   I  I+ +S
Sbjct: 369 MVWSAVLGPLGAVVSVPMTLFIKAIFVDS 397


>gi|241203977|ref|YP_002975073.1| hypothetical protein Rleg_1242 [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857867|gb|ACS55534.1| protein of unknown function UPF0118 [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 374

 Score = 86.8 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/327 (12%), Positives = 104/327 (31%), Gaps = 11/327 (3%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +L  Q       +   +  LY       P ++ + I +   P+      +   S     +
Sbjct: 9   ILKRQIFFWLAALVFFIAFLYVFSSILLPFIAGMAIAYFLDPVADRLE-RLGLSRMMATI 67

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
              V+ + +F + L+ L    + +  +   ++               +     W      
Sbjct: 68  GILVAFVIVFALALMILIPVLISQFNDFAQRLPGYISQLQQFITQAQNSLLPDWVENQMG 127

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
               +   +      FL       +       G   +D    ++   +  F+   D   +
Sbjct: 128 AIKDNLSGILSEGMGFLTG-----LFAQIWNSGKAIVDVISLLVVTPVVAFYILLDWDRM 182

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             ++D      + +  ++I++ + + I     G   + +  G+       L G+   + +
Sbjct: 183 VAKVDQWIPRDYVSDVRQIAKEIDQAIAGFIRGQGSLCLILGIYYAVGLSLVGLNFGLLI 242

Query: 245 GVITAIMAMIP----GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           G+   +++ IP        +    V++        +    L ++ +   F+    L+P L
Sbjct: 243 GLFAGMISFIPYVGSMVGLVLAIGVALVQFWPDYPWIGLVLVVFFSG-QFLEGNILQPKL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           VG  + L  +   F L       G +G
Sbjct: 302 VGSSVGLHPVWLMFALFAFGALFGFVG 328


>gi|310829537|ref|YP_003961894.1| hypothetical protein ELI_3987 [Eubacterium limosum KIST612]
 gi|308741271|gb|ADO38931.1| putative membrane protein [Eubacterium limosum KIST612]
          Length = 392

 Score = 86.8 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/307 (13%), Positives = 97/307 (31%), Gaps = 5/307 (1%)

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
           +++       V+  + +  L    + F+       ++ L++K             W++ +
Sbjct: 79  REKGKRAAAIVLTFIFIGLLITGVVTFVIPQLQKSVEMLITKFPGY---VASFNLWVNQV 135

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
              +   E     LS          +      +  I            ++ +  I  +  
Sbjct: 136 LEWLHLPEDAWNQLSSQWQDLFPKISSGLIGAMPEIVNTTVSITQGVFNFLMGFIISVYM 195

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           L    R      + + +       A+  ++     +       G    A   G +  +  
Sbjct: 196 LADKERLLALKDKLMYAYIPDKARAFINEVGHTANQTFHGFIAGQITEAFILGTLCAAGL 255

Query: 234 WLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            +  VP  + +GV+  + ++IP  GA +      + LL+           ++      + 
Sbjct: 256 AILRVPYALLIGVLVGVTSIIPIFGAFLGAVPSGLILLVV-KPVYCLIFIIYIICLQQVE 314

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              + P +VG  + +  L    G++ G    G  G+ +G    A++  + +    A    
Sbjct: 315 SNVIYPKVVGTSVGISGLWVLIGMLLGGSFFGFTGMILGIPGFAVLYSVVRTLTNARIAR 374

Query: 353 KEKISSN 359
           K+    N
Sbjct: 375 KQAAKQN 381


>gi|294496279|ref|YP_003542772.1| hypothetical protein Mmah_1631 [Methanohalophilus mahii DSM 5219]
 gi|292667278|gb|ADE37127.1| protein of unknown function UPF0118 [Methanohalophilus mahii DSM
           5219]
          Length = 364

 Score = 86.8 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 53/341 (15%), Positives = 122/341 (35%), Gaps = 22/341 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +       + L  +  L      ++  L+  +   PIY     K    +         
Sbjct: 18  KILALLAFFILFLALVKILLPLADGIVLGLVFAYICRPIYDKINKKNHYGAFIA------ 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP-RWLSDIPGGMWASELWTKHL 127
                 + PL+ +   G +E+   +  V+      + +   ++  I  G +   +     
Sbjct: 72  --TMFIVTPLVIIIGTGFVEIFRQLIWVIENQSQVLEIIFDFIRAILPGTYFERV----- 124

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              Q +   S + L   G      +A   GM    + ++++  I   +F   +G  +   
Sbjct: 125 --NQLVWDSSLSILSFAGSLGFVSYAKSLGM----FMINLVVAIFVCYFLLLEGEKLYAS 178

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              +          +  R + +++   F+G    A+    +    ++  G+   +AL  +
Sbjct: 179 AVCIAPKGTQLNTGRYLRELDRILSGIFIGNAYAALTVSTISVVVFYAFGLSHILALATL 238

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFI-VDKTLRPFLVGGPI 305
             I ++IP  A  +    +S+   I+     A   F+  +I +++  +  LRP+ V    
Sbjct: 239 IFIASVIPFFAGYMVLLILSVIRYIEMGAEAAIIFFIVSSIVIYVPPELFLRPYFVSMKS 298

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           ++  +      +GG    G+ G F  PVL+  +   ++  I
Sbjct: 299 QIHPVVLVVVFLGGGFVGGIAGFFAAPVLLGALVAAYRVYI 339


>gi|317129913|ref|YP_004096195.1| sporulation integral membrane protein YtvI [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474861|gb|ADU31464.1| sporulation integral membrane protein YtvI [Bacillus
           cellulosilyticus DSM 2522]
          Length = 370

 Score = 86.8 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 50/300 (16%), Positives = 103/300 (34%), Gaps = 12/300 (4%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +  P L  LII     P  +   +K   + +   ++  V  +  F   +  L    +  +
Sbjct: 33  YLYPFLIGLIISLIFLPAVNFIENKFGWNRSSAVLLIIVFFILTFSALITLLVAEIVAGL 92

Query: 90  KELVSKVVLANQHGIPVPRWLSD---IPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
             L  ++      GI       D   +P         ++     Q+    S   L +N  
Sbjct: 93  SYLTKELPTYIHDGIEFIHLWFDTYLLPIYEGLIAFSSQLDPGQQTTIHQSLERLLSNFG 152

Query: 147 DFIPRFASRFGMIFLDYCLSI-------IFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
           + +          F D+ +++        F ++  FF  +D  ++ Q L+S         
Sbjct: 153 EQMSNIIQYVLNGFADFLMALPNTITVLFFALLGAFFITKDWPTMMQWLESKTPKKIKVI 212

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGA 258
             +++    K I        I+    G+++     + GV   +   ++ AI+ ++P  G 
Sbjct: 213 ANRMTEQWKKAIVGYVFAQLILVSMTGVIVFIGLLIIGVDYAITTALLIAIVDLLPYLGT 272

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            + F    +Y    G+   A  L +  AI + I      P ++   + +P L     L  
Sbjct: 273 GLVFIPWILYTFFSGHWGLAIGLSILYAIVI-IQRNLAEPKVMSKHMGIPPLALLVSLFA 331


>gi|256784808|ref|ZP_05523239.1| hypothetical protein SlivT_09978 [Streptomyces lividans TK24]
          Length = 439

 Score = 86.8 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 52/358 (14%), Positives = 115/358 (32%), Gaps = 16/358 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF--LKGFFAPVLSALIIGFTSWPIYSSFISKKEES 58
           M   +     +   +I    L S  F  L G    VL A  +     P  S    +    
Sbjct: 38  MPRWLPRAMVLALALIAAFQLGSWAFHQLTGLLINVLIAFFLALAIEPAVSWMAGR-GMR 96

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
             F   +  ++V+      +  L      ++ ++V +              + +   G +
Sbjct: 97  RGFATFLVFLAVLIAAAGFVTLLGSMLAGQIVKMVEEF-------PDYLDSVINWVNGHF 149

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            +EL    +            +++ +    +   A   G +F      ++ +++  F+F 
Sbjct: 150 HTELRRVDIQEGLLRSDWLRNYVQNSATGVLDVSAQVLGGLF-----QLLTVLLFSFYFA 204

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            DG  + + L S+      A   +   I             ++A+  G+       +  V
Sbjct: 205 ADGPRLRRGLCSVLPPARQAEVLRAWEIAVDKTGGYLYSRGLMALVSGVAHYILLEILEV 264

Query: 239 PSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P   AL V   +++  IP        A+ + +    N + A  + ++  I     +  L+
Sbjct: 265 PYAPALAVWVGLVSQFIPTIGTYLAGALPMLIAFTVNPWYALWVLVFVVIYQQFENYVLQ 324

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           P L    + +     F  ++ G   +G +G  I    +A +       +       + 
Sbjct: 325 PKLTSKTVDIHPAVAFGSVIAGTALLGAVGALIAIPAVATLQAFLGAYVKRYDVTDDP 382


>gi|312109941|ref|YP_003988257.1| sporulation integral membrane protein YtvI [Geobacillus sp.
           Y4.1MC1]
 gi|311215042|gb|ADP73646.1| sporulation integral membrane protein YtvI [Geobacillus sp.
           Y4.1MC1]
          Length = 372

 Score = 86.8 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 61/344 (17%), Positives = 126/344 (36%), Gaps = 12/344 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             I+ +  ++LY++     P + A  I F   P+     +K +       V+  + +  L
Sbjct: 16  IAIVVLGAIALYYVSTVIYPFIIAFFIAFFINPLVDFLETKAKMPRWLAVVVTLIVLFAL 75

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL---SDIPGGMWASELWTKHLSHP 130
               +  L    +   + L + V    Q  +           IP     + L+    +  
Sbjct: 76  VAGLVTLLIAEIVSGTQYLANVVPENFQKLVKYIETFFAQQIIPLYHDLAALFKNLDASQ 135

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL-------SIIFMIIALFFFYRDGFS 183
           Q   + +   + T     + +F  R                   IF ++A FF  +D + 
Sbjct: 136 QDTIMNNIQAVGTQIATTVGQFTQRVLQNIPQLLTWLPNAATVFIFSLLATFFISKDWYR 195

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           ++  +  +         K++   + K +         +     +++     + GV   + 
Sbjct: 196 LTGMVQKILPAKAHKSGKRVFLDLKKALFGFIKAQATLISITTVIVLIGLLILGVDYAIT 255

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           + +I  ++ ++P  G  I F    IY  I GN+  A  L +   I L +  + + P ++ 
Sbjct: 256 IALIIGLVDILPYLGTGIVFVPWIIYAAISGNVPFAIGLGVLYIIVL-VQRQIMEPKVLS 314

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
             I L  L T   L  G + +G LGL +GPV + +I  +   ++
Sbjct: 315 SSIGLDPLATLVALFVGFKLIGFLGLIVGPVTLVIIRTLHSANV 358


>gi|229075334|ref|ZP_04208327.1| hypothetical protein bcere0024_30750 [Bacillus cereus Rock4-18]
 gi|228707885|gb|EEL60065.1| hypothetical protein bcere0024_30750 [Bacillus cereus Rock4-18]
          Length = 376

 Score = 86.8 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 52/326 (15%), Positives = 121/326 (37%), Gaps = 5/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + FLK  F PVL A ++ +   P + S + KK  S         + V+ LF+
Sbjct: 44  ISFVFTPFIVFLKTIFFPVLLAGVLFYILHP-FVSLLEKKGVSRIVSIASIYLIVLGLFV 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             ++ +      ++  L+  +           R      G         ++L+   +  +
Sbjct: 103 FLVVTVIPIIKEQIDALIDNLPYFGHEIERAARRF----GESNLLGKIQENLNIDVANIV 158

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   T  +  +    + F     +  L+ + +   LF+  +DG  +           
Sbjct: 159 KDYTVDFTKSLSSVTGNVTGFLSTLTEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQ 218

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +I   +   I S   G  I+++  G++L   Y + G+   V L ++  I+ ++P
Sbjct: 219 RQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVP 278

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P+     ++ +    +      + +   +      K + P ++G  + +  +   F 
Sbjct: 279 YVGPVIAITPALIIAFIDSPGMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFI 338

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++      G++G+ +     A++ V+
Sbjct: 339 ILTAGNLFGIMGIVLAIPGYAILKVL 364


>gi|328554360|gb|AEB24852.1| permease [Bacillus amyloliquefaciens TA208]
          Length = 353

 Score = 86.8 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 114/318 (35%), Gaps = 15/318 (4%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
             +K  F P+  A+ I +   PI      K            T+S++ ++ +    + + 
Sbjct: 37  LVIKSLFIPIFIAVFIAYLLLPITEWLHGKGMPR--------TLSLLLIYFLFFGGIGWG 88

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
               +  L+ ++   ++    +    + +        L       P  +    +  ++  
Sbjct: 89  VYKGVPVLIEQLQDLSESIPGLAENYNSM-----LRHLHNHTDHWPDGMHHRMDKMIQQT 143

Query: 145 GIDFIPRFASRFGMI--FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                    S    I    DY L    +   +F+  +D  ++ + +  L    +     +
Sbjct: 144 ETFLAGTIESTIRSIRFVFDYILIAATIPFLVFYMVKDIDAMKKTVWYLTPKSWRKRGSE 203

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             R V   +     G  ++    GL+ G ++W+ G+P  + LG++  I  +IP   P   
Sbjct: 204 FLRDVDDSLGDYIRGQLLVCFLLGLIAGCSFWMFGLPYPLILGLVIGITNVIPYFGPFIG 263

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ L +  +      + +   I  FI    L P +VG  +++  +     L+ G   
Sbjct: 264 AVPTLLLALALSAKAVIIVIITIFILQFIEGNILSPLIVGRSLRMHPVVIMLALLAGGEL 323

Query: 323 MGLLGLFIGPVLMALIAV 340
            G+ G+ +     A++ V
Sbjct: 324 AGIPGMILAVPAAAVLKV 341


>gi|21224113|ref|NP_629892.1| hypothetical protein SCO5767 [Streptomyces coelicolor A3(2)]
 gi|2687332|emb|CAA15873.1| putative membrane protein [Streptomyces coelicolor A3(2)]
          Length = 402

 Score = 86.8 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 52/358 (14%), Positives = 115/358 (32%), Gaps = 16/358 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF--LKGFFAPVLSALIIGFTSWPIYSSFISKKEES 58
           M   +     +   +I    L S  F  L G    VL A  +     P  S    +    
Sbjct: 1   MPRWLPRAMVLALALIAAFQLGSWAFHQLTGLLINVLIAFFLALAIEPAVSWMAGR-GMR 59

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
             F   +  ++V+      +  L      ++ ++V +              + +   G +
Sbjct: 60  RGFATFLVFLAVLIAAAGFVTLLGSMLAGQIVKMVEEF-------PDYLDSVINWVNGHF 112

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            +EL    +            +++ +    +   A   G +F      ++ +++  F+F 
Sbjct: 113 HTELRRVDIQEGLLRSDWLRNYVQNSATGVLDVSAQVLGGLF-----QLLTVLLFSFYFA 167

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            DG  + + L S+      A   +   I             ++A+  G+       +  V
Sbjct: 168 ADGPRLRRGLCSVLPPARQAEVLRAWEIAVDKTGGYLYSRGLMALVSGVAHYILLEILEV 227

Query: 239 PSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P   AL V   +++  IP        A+ + +    N + A  + ++  I     +  L+
Sbjct: 228 PYAPALAVWVGLVSQFIPTIGTYLAGALPMLIAFTVNPWYALWVLVFVVIYQQFENYVLQ 287

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           P L    + +     F  ++ G   +G +G  I    +A +       +       + 
Sbjct: 288 PKLTSKTVDIHPAVAFGSVIAGTALLGAVGALIAIPAVATLQAFLGAYVKRYDVTDDP 345


>gi|42782433|ref|NP_979680.1| hypothetical protein BCE_3380 [Bacillus cereus ATCC 10987]
 gi|42738358|gb|AAS42288.1| membrane protein, putative [Bacillus cereus ATCC 10987]
          Length = 376

 Score = 86.8 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 121/326 (37%), Gaps = 5/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + FLK  F PVL A ++ +   P + S + KK  S         + V+ LF+
Sbjct: 44  ISFVFTPFIVFLKTIFFPVLLAGVLFYILHP-FVSLLEKKGVSRIVSIASIYLIVIGLFV 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +L +      ++  L+  +           R      G         ++L+   +  +
Sbjct: 103 FLVLTVIPIIKDQIDALIDNLPYFGHEIERAARRF----GESNLLGKIQENLNINVANMV 158

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   T  +  +    + F     +  L+ + +   LF+  +DG  +           
Sbjct: 159 KDYTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQ 218

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +I   +   I S   G  I+++  G++L   Y + G+   V L ++  I+ ++P
Sbjct: 219 RRPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVP 278

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI     ++ +    +      + +   +      K + P ++G  + +  +   F 
Sbjct: 279 YVGPIIAITPALIIAFIDSPAMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFI 338

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++      G++G+ +     A++ V+
Sbjct: 339 ILTAGNLFGIMGIILAIPGYAILKVL 364


>gi|332043622|gb|EGI79817.1| protein of unknown function UPF0118 [Lacinutrix algicola 5H-3-7-4]
          Length = 363

 Score = 86.8 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 59/343 (17%), Positives = 124/343 (36%), Gaps = 18/343 (5%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + I+L  LY ++   A +  A +I     P+      K + + T   +      + +   
Sbjct: 20  IVILLWFLYTIQSVIAYLAIAGVISLIGRPLVIFLKRKLKFNDTVAVITTMFLFILVIAA 79

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +       + + + L    +   Q  I                + +  + +  +     
Sbjct: 80  IIGMFIPLAIEQGQNLSLLNIDQLQTNIENL--------YQEFIQHFNLNKTDVEESIKD 131

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           S+ F K N   FIP F +     F  + + +  ++   FFF +D       + ++     
Sbjct: 132 SKVFSKLN-FGFIPNFLNAVVTGFGSFSIGLFSVLFISFFFLKDSNLFGSSILTIFPKAQ 190

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
            +  KK    +  ++   F G+ +  +    +      + G+ + V +  + A++ +IP 
Sbjct: 191 ESRIKKSFITIRDLLSRYFGGLLLQLLILFTIYSIVLLIFGIENAVIIASLCALLNIIPY 250

Query: 257 GAPISFTAVSIYLLIKGNIFNA--------TCLFLWGAIELFIVDKTL-RPFLVGGPIKL 307
             PI    + I L +  N+  +        T   + G I   +VD    +PF+    +K 
Sbjct: 251 VGPIISGVLIILLTMSSNLGQSFSDVILPKTMYVMIGFIVAQLVDNFFSQPFIFSKSVKS 310

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             L  F  ++      G++GL I   L   + VI KE +   +
Sbjct: 311 HPLEIFIVIIIVGLLFGIVGLIIAVPLYTALKVIAKEFLSEYR 353


>gi|21223403|ref|NP_629182.1| integral membrane protein [Streptomyces coelicolor A3(2)]
 gi|9967657|emb|CAC05875.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
          Length = 465

 Score = 86.8 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 110/320 (34%), Gaps = 23/320 (7%)

Query: 17  MFIILVSLYFLKGFFAPV-------LSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           + ++  +++ L    + V       ++AL+I     P  +             A+ A + 
Sbjct: 93  LLVLAGTVWVLMRVISAVQLVVLAFVAALLITALLQPAVAWLRRHGVPRGPATALTAILG 152

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMWASELWTKHLS 128
            +      +  + ++   ++ E +  +    Q GI   R WL + P  +   ++     +
Sbjct: 153 FVV-----MGLIGWFVTWQVMENIDNLSDQVQDGIDELRNWLLNSPFHVTDKQINEIAKN 207

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              ++   ++                    + ++    I+    +  F   DG  I Q  
Sbjct: 208 LRDAVGANTDQITSAGLEGV---------TVVVEALTGILLAAFSTLFLLYDGKRIWQWS 258

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L                 + + +   G  I+A+ + + +G   +   VP  V L V  
Sbjct: 259 LKLVPAAARPGVAGAGPRAWRTLTAYVRGTVIVALIDAIFIGLGIYFLDVPMAVPLAVFI 318

Query: 249 AIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A IP    +   A+++ + L+   +F A    +       I    L+PF++G  +++
Sbjct: 319 FLFAFIPLVGAVVSGALAVVVALVTQGVFAAVMTLVVVLAVQQIEGHILQPFILGRAVRV 378

Query: 308 PFLPTFFGLVGGVRTMGLLG 327
             L     +  G    G+ G
Sbjct: 379 HPLAVVLSVAAGGMVAGIGG 398


>gi|328884744|emb|CCA57983.1| putative integral membrane protein [Streptomyces venezuelae ATCC
           10712]
          Length = 480

 Score = 86.8 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 48/318 (15%), Positives = 110/318 (34%), Gaps = 19/318 (5%)

Query: 17  MFIILVSLYFLKGFFAPV---LSALIIGFTSWPIYS---SFISKKEESSTFLAVIATVSV 70
           + +   +++ L    + V   + A +       +     + + +K         +  VS 
Sbjct: 114 LLVFAGTVWVLMKVISSVQLVVLAFVAALLVTALLQPTVALLRRKGLPRGLATAVTAVSG 173

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             +  +   F+ +  M  +  L  +V    +    + RWL D P  +   ++        
Sbjct: 174 FVVMGLVGWFVVWQVMDNIDTLSDRVKDGIEE---LKRWLLDSPFHVTEQQI-------- 222

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
             +       +  N    I     +   + ++    I+  + +  F   DG  + +    
Sbjct: 223 NDIAKNLSDTIGANAEQ-ITSAGLQGVTVVVEAMTGILLAMFSTLFLLYDGKKVWEWTLK 281

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L                 + + +   G  ++A+ + + +G   W   VP  V L V   +
Sbjct: 282 LVPAQARPGVAGAGPRAWRTLTAYVRGTVLVALIDAVFIGLGLWFLEVPMAVPLAVFIFL 341

Query: 251 MAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            A IP    +   A+++ + L+   +F A  + +       I    L+PF++G  +++  
Sbjct: 342 FAFIPLVGAVVSGALAVVVALVTNGVFTALMVLVVVLAVQQIEGHVLQPFILGRAVRVHP 401

Query: 310 LPTFFGLVGGVRTMGLLG 327
           L     +  G  T G+ G
Sbjct: 402 LAVVLAVAAGGLTAGIGG 419


>gi|327481531|gb|AEA84841.1| transporter, putative [Pseudomonas stutzeri DSM 4166]
          Length = 365

 Score = 86.8 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 120/334 (35%), Gaps = 14/334 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + + +  +Y L     P L  +++ +   P+           +          V+ +F +
Sbjct: 15  LLLCIWLVYLLTPILTPFLIGVLLAYLGDPLVDRLERWGLSRTW--------GVIAVFAL 66

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL-WTKHLSHPQSLKI 135
             L L    ++ +  L  ++V   Q       WL  +      ++     +      LK 
Sbjct: 67  FSLLLLVLLLVLVPMLGKQLVRLYQLAPLALDWLQHVALPWVQTQFGLEDNFWQLDRLKA 126

Query: 136 LSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                L +    +  I   A+   +  L +  +++ + +  F+  RD   I  +L SL  
Sbjct: 127 AFTAHLGSTTDVLGMILSRATASSLALLAWIGNLLLIPVVSFYLLRDWDLIMLKLRSLLP 186

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   ++     +VI +   G  ++ +   ++  S   L G+   + +GV+  + ++
Sbjct: 187 RKREGMVVRLMSECHEVIGAFLRGQLLVMLALAIIYASGLMLVGLELGLLIGVLAGLASI 246

Query: 254 IPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +P    +     ++   +       +    + +   +   +    L P LVG  I L  +
Sbjct: 247 VPYMGFVVGIGAAVIAALFQFGLAPYPLIGVAVVFTVGQMLEGMLLTPLLVGDRIGLHPV 306

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              F ++ G +  G  G+ +   + A+I V+ + 
Sbjct: 307 AVIFAVLAGGQLFGFTGVLLALPVAAVIMVLLRH 340


>gi|313890047|ref|ZP_07823682.1| putative membrane protein [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121408|gb|EFR44512.1| putative membrane protein [Streptococcus pseudoporcinus SPIN 20026]
          Length = 393

 Score = 86.8 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 135/361 (37%), Gaps = 21/361 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLY--------------FLKGFFAPVLSALIIGFTSWPIYSS 50
           +LN + ++   ++ +I V ++              FL     P++ + I+ + + P+   
Sbjct: 18  ILNNKAVVSLFVLLLIFVIIFVFTKISFLFASLGSFLTILMLPLVISTILYYLTKPLVDG 77

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
             +     +T +A++    ++CL +     L      ++   ++ +             L
Sbjct: 78  IENLGPNRTTSIAIVF-ALILCLLVWAFASLIPMIGNQITTFIADLPKYIGTVNKEANKL 136

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
            +    +         +++     I        N  ++   FAS    I +   +S   +
Sbjct: 137 LENDWLVSYRTELQDMVTNISKKAIDYAETFSKNAFEWAGSFASAIARITVSIIISPFII 196

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
                +F RD   +   L ++          ++   + K +     G   +AI  G +  
Sbjct: 197 F----YFLRDSSKMKDGLVNVLPTKVRVPISRVLGDINKQLAGYVQGQVTVAIIVGFMFA 252

Query: 231 SAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
             + L G+   +   ++  ++ M+P  G+ ++   V I  L++G +     L ++  IE 
Sbjct: 253 IMFSLVGLKYSITFAIVAGVLNMVPYLGSFLAMVPVVIMALVQGPLMLVKVLLIF-TIEQ 311

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            I  + + P ++G  + +  +   F L+      G+ G+F+   + A + VI KE     
Sbjct: 312 TIEGRFVTPLVLGNKLSIHPITIMFLLLTSGAMFGVWGVFLIIPIYASLKVIVKELFDWY 371

Query: 350 K 350
           K
Sbjct: 372 K 372


>gi|302386088|ref|YP_003821910.1| protein of unknown function UPF0118 [Clostridium saccharolyticum
           WM1]
 gi|302196716|gb|ADL04287.1| protein of unknown function UPF0118 [Clostridium saccharolyticum
           WM1]
          Length = 379

 Score = 86.8 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 49/345 (14%), Positives = 120/345 (34%), Gaps = 7/345 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE---ESSTFLAVIATVSVMCLFIV 76
           ++  +  + GF +P L+  ++ F                  S     +   ++++ +  V
Sbjct: 31  LIAMVMKVIGFISPFLAGGVMAFILNVPMRRIEKMLPVKEGSRIRRPLSLCLTLVFVIGV 90

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            LL +F       + L+S           V      +             +       + 
Sbjct: 91  LLLVIFVVMPQLFETLISLQNSIPAFLAGVKEEAERLFAQNPEIADSISGIQIDWKAFLE 150

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           S     + G   +        M  ++   + +  ++   +      ++S+Q   L +   
Sbjct: 151 SVVGFLSTGAGSVLSSTVSAAMSIINGVTTFVIALVFAVYILLQKETLSRQFQKLMKAFL 210

Query: 197 PA----YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           P        +I  +  +   +   G  + A+  G +      +  +P  + +GV+ A  A
Sbjct: 211 PEGVMARTLEILTLASETFSNFLTGQCLEAVILGSMFFFTLSVFRLPYGLLIGVLIAFTA 270

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +IP        A+  +L++     +A    +   +   +    + P +VGG + LP +  
Sbjct: 271 LIPMFGAFIGCAIGAFLMLMVKPLDAVVFLIIFFVLQQLEGNFIYPHVVGGSVGLPSIWV 330

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
              +  G   MG++G+ I   L +++  I +E++    E  +++ 
Sbjct: 331 LVAVTIGGSAMGIVGMLIFIPLSSVLYAILRETVNGRLERNKRLK 375


>gi|15888479|ref|NP_354160.1| permease [Agrobacterium tumefaciens str. C58]
 gi|15156177|gb|AAK86945.1| permease [Agrobacterium tumefaciens str. C58]
          Length = 385

 Score = 86.8 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 50/327 (15%), Positives = 114/327 (34%), Gaps = 9/327 (2%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T L  Q      ++ + ++ L        P ++ + + +   P+      +   S     
Sbjct: 8   TSLRRQVFFWIGVLAVFVLFLMVFSSILLPFVAGMALAYFLDPVADWLERR-GLSRLMAT 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           V+  VS + +F + L+ +    + +  E ++++         +           W S   
Sbjct: 67  VVILVSFVLIFALSLIIIIPLIVAQASEFITRIPQYISSLQQLIAGADTNLLPDWVSGQI 126

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +   L      F+ T     +       G   +D    ++   +  F+   D   
Sbjct: 127 NSVKENFSKLLTEGAGFIGT-----LLTQIWNSGKSLVDVLSLLVVTPVVAFYLLLDWDR 181

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  ++DS     +    ++I+R + K I     G   + +  G+       L G+   + 
Sbjct: 182 MIDKVDSWIPRDYVHTVRQIARDMDKTIAGFVRGQGSLCLILGVYYAVGLSLVGLNFGLL 241

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE---LFIVDKTLRPFL 300
           +G+ + +++ IP    +    +++ + I     +   +FL   +     FI    L+P L
Sbjct: 242 IGLFSGLISFIPYIGSMVGLILAVGVAIVQFWPDYIYVFLTLVVFFSGQFIEGNILQPKL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           VG  + L  +   F L       G +G
Sbjct: 302 VGKSVGLHPVWLMFALFAFGALFGFVG 328


>gi|23008271|ref|ZP_00049786.1| COG0628: Predicted permease [Magnetospirillum magnetotacticum MS-1]
          Length = 125

 Score = 86.8 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 52/121 (42%), Positives = 75/121 (61%)

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           Y LAGVP  V  G ITA+ AMIP GAP++F   ++ LL  G +  A  +   G +  F+ 
Sbjct: 1   YALAGVPHPVLFGAITAVAAMIPFGAPLAFGLAAVLLLAGGAVVPAAIVVAAGFVVTFVA 60

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           D  +RP L+GG  +LPFL    G++GGV T GLLGLF+GP +MA + ++W++   + +E 
Sbjct: 61  DHFVRPVLIGGTTRLPFLWVLLGILGGVETFGLLGLFVGPAVMAALILLWRDFTGSPEER 120

Query: 353 K 353
            
Sbjct: 121 P 121


>gi|229156954|ref|ZP_04285035.1| hypothetical protein bcere0010_31380 [Bacillus cereus ATCC 4342]
 gi|228626444|gb|EEK83190.1| hypothetical protein bcere0010_31380 [Bacillus cereus ATCC 4342]
          Length = 376

 Score = 86.8 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 121/326 (37%), Gaps = 5/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + FLK  F PVL A ++ +   P + S + KK  S         + V+ LF+
Sbjct: 44  ISFVFTPFIVFLKTIFFPVLLAGVLFYILHP-FVSLLEKKGVSRIVSIASIYLIVIGLFV 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +L +      ++  L+  +           R      G         ++L+   +  +
Sbjct: 103 FLVLTVIPIIKDQIDALIDNLPYFGHEIERAARRF----GESNLLGKIQENLNINVANMV 158

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   T  +  +    + F     +  L+ + +   LF+  +DG  +           
Sbjct: 159 KDYTVDFTKSLSSVTGNVTGFLSTITEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQ 218

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +I   +   I S   G  I+++  G++L   Y + G+   V L ++  I+ ++P
Sbjct: 219 RRPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVP 278

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI     ++ +    +      + +   +      K + P ++G  + +  +   F 
Sbjct: 279 YVGPIIAITPALIIAFIDSPAMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFI 338

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++      G++G+ +     A++ V+
Sbjct: 339 ILTAGNLFGIMGVILAIPGYAILKVL 364


>gi|194015659|ref|ZP_03054275.1| YubA [Bacillus pumilus ATCC 7061]
 gi|194013063|gb|EDW22629.1| YubA [Bacillus pumilus ATCC 7061]
          Length = 380

 Score = 86.8 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 50/333 (15%), Positives = 124/333 (37%), Gaps = 5/333 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           FI    +  +K    P++   ++ +   PI +  + K      F  ++  + ++ +  V 
Sbjct: 42  FIFTPLIVLVKTIALPIILTGVVYYLLNPIVN-LLEKFRVKRIFSILLLYIVIIGIITVT 100

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           ++ +  +   +M  L   +         V   +  + G  + ++   K ++   S  +  
Sbjct: 101 IVSIIPFLQAQMMSLFHNLPKYVDT---VEDQIRQLTGSNFINQA-QKAMNFNVSELVSK 156

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            +   T  ++        F     +  +SI+ +   LF+  +DG  +         + F 
Sbjct: 157 ASSQATKILESTFTGVGTFLGALTEVIISIVTVPFILFYLLKDGKKLPDYFLKFIPNKFR 216

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
            +   +   +   + S  LG  I++   G++L   Y + G+     L +I A  +++P  
Sbjct: 217 EHTHIVLHEMNHRLSSYILGQIIVSFCIGVLLLIGYMIIGLDYAFLLAIIAACTSIVPYL 276

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P      +I + +  +      L +   +   I  K + P ++G  + +  +   F L+
Sbjct: 277 GPTIAITPAIVIALVTSPIMLLKLIIVWTVVQLIEGKFISPQVMGKNLHIHPITIIFVLL 336

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
              +   ++G+ +     A++ VI        K
Sbjct: 337 TAGKLFSVVGIIVAIPTYAVLKVITTHLFDWFK 369


>gi|29829776|ref|NP_824410.1| integral membrane protein [Streptomyces avermitilis MA-4680]
 gi|29606885|dbj|BAC70945.1| putative integral membrane protein [Streptomyces avermitilis
           MA-4680]
          Length = 440

 Score = 86.8 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/319 (13%), Positives = 108/319 (33%), Gaps = 21/319 (6%)

Query: 17  MFIILVSLYFLKGFFAPV-------LSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           + ++  +++ L    + V       ++AL+I     P  +               +  + 
Sbjct: 86  LLVLAGTVWVLMRVISAVQLVVLAFVAALLITALLQPTVARLTRHGVPR-GLATALTAIL 144

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              +  +   F+ +  M  +  L ++V         + +WL + P  +   ++     + 
Sbjct: 145 GFVVMGLIGWFVTWQVMENIDNLSNQVQDGIDE---LRKWLLNSPFHVTPKQINEIAKNL 201

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            +++   ++                    + ++    I+  + +  F   DG  I +   
Sbjct: 202 REAVGANTDQITSAGLEGV---------TVIVEALTGILLTMFSTLFLLYDGRRIWEWTL 252

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L                 + + +   G  I+A+ + + +G   +   VP  V L V   
Sbjct: 253 KLVPSAARPGVAGAGPRAWRTLTAYVRGTVIVAMIDAIFIGLGIYFLDVPMAVPLAVFIF 312

Query: 250 IMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           + A IP    +   A+++ + L+   +F A            I    L+PF++G  +++ 
Sbjct: 313 LFAFIPLVGAVVSGALAVVVALVTQGVFTAVLTLAVVLAVQQIEGHILQPFILGRAVRVH 372

Query: 309 FLPTFFGLVGGVRTMGLLG 327
            L     +  G    G+ G
Sbjct: 373 PLAVVLSVAAGGMVAGIGG 391


>gi|317181882|dbj|BAJ59666.1| membrane protein [Helicobacter pylori F57]
          Length = 349

 Score = 86.8 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 65/363 (17%), Positives = 134/363 (36%), Gaps = 25/363 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  Q     + +      +Y  + F    L A ++    + +               + +
Sbjct: 1   MKAQYFFWILFLIGFYWMIYLYQDFLMDALIAGLLCVGFFQVKVFLDKCFLN--LISSFL 58

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +  + IVPL F+ Y     + E+        +    + +WL         +E  + 
Sbjct: 59  CVLILASVLIVPLYFIVYKSSNIIFEI------NFEKFSALIKWLKG-----TITENLSH 107

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +         E F   +   ++ R +S  G   L      +F++  LFFF+  G    
Sbjct: 108 FPTIHDGASKFLENFSAASITGYLLRISSYVGKYSLKLITDALFILGLLFFFFYYGERFY 167

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +   L     KKI   V  ++R   L   I  I EG+  G      G      LG
Sbjct: 168 RYFLGVLP-LGTNQSKKIFEEVAGILRIVLLTSLITVILEGVAFGLMIVWFGHDGWS-LG 225

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLV-- 301
           ++  + +++P  G  + +  ++IY L  GN+  A  + L+  + +  ++D  ++P L+  
Sbjct: 226 ILYGLASLVPAVGGALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVF 285

Query: 302 ------GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                    +K+  +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 286 IKKRIFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345

Query: 356 ISS 358
              
Sbjct: 346 ACE 348


>gi|239943929|ref|ZP_04695866.1| putative integral membrane protein [Streptomyces roseosporus NRRL
           15998]
 gi|239990383|ref|ZP_04711047.1| putative integral membrane protein [Streptomyces roseosporus NRRL
           11379]
 gi|291447394|ref|ZP_06586784.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
 gi|291350341|gb|EFE77245.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
          Length = 460

 Score = 86.8 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/319 (14%), Positives = 110/319 (34%), Gaps = 21/319 (6%)

Query: 17  MFIILVSLYFLKGFFAPV-------LSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           + ++  +L+ L    + V        +AL++     P       +          +  V 
Sbjct: 87  LLVLAGTLWVLMRVISAVQLVVLAFAAALLVTAMLQPTVVRL-KRFGLPHGLATAVTAVL 145

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              +  +   F+ +  M  +  L  +V         + RW  D P  +  S++       
Sbjct: 146 GFVIIGLVGWFVVWQVMENLDTLSERVRDGIDE---LKRWALDSPFHVTESQI------- 195

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              +       + TN  + I     +   + +++   ++  + +  F   DG  I +   
Sbjct: 196 -NDIAKNLNDTIGTNTEE-ITSAGLQGVTVMVEFLTGLLLAMFSTLFLLYDGRRIWEWSL 253

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L                 + + +   G  ++A+ + + +G   ++  VP  V L V   
Sbjct: 254 KLVPAAARPGVAGAGPRAWRTLTAYVRGTVLVALIDAIFIGFGLYVLNVPLAVPLAVFIF 313

Query: 250 IMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           + A IP    +   A+++ + L+   ++ A    +       I    L+PF++G  +++ 
Sbjct: 314 LFAFIPLVGAVVSGALAVVVALVTEGVWTALWALVVVLAVQQIEGHILQPFILGRAVRVH 373

Query: 309 FLPTFFGLVGGVRTMGLLG 327
            L     +  G    G+ G
Sbjct: 374 PLAVVLAVATGGLVAGIGG 392


>gi|170720411|ref|YP_001748099.1| hypothetical protein PputW619_1225 [Pseudomonas putida W619]
 gi|169758414|gb|ACA71730.1| protein of unknown function UPF0118 [Pseudomonas putida W619]
          Length = 357

 Score = 86.4 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 50/320 (15%), Positives = 123/320 (38%), Gaps = 14/320 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
            +P L  +++ + + P+      +   S T+        V+ +F +  L L    ++ + 
Sbjct: 27  LSPFLVGILLAYLADPLVDRLE-RMGLSRTW-------GVVVVFSLFTLILLVLLLILIP 78

Query: 91  ELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLKILSETFLKT-NGID 147
            L  ++V   +    +  WL    +P       L        +    +SE   +T + + 
Sbjct: 79  MLAKQLVRLYELTPQMLDWLQHVALPWVQSRLGLADGFWKFDKIKAAVSEHMGQTTDIVG 138

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            +   A+   +  L +  + + + +  F+  RD   +  +L SL      +    ++   
Sbjct: 139 MLLSQATASSLALLAWLANFVLIPVVGFYLLRDWDLMMAKLRSLLPRQRESQVVGLAAEC 198

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
            +V+ +   G  ++ +  G++  +   L G+   + +G++  + A++P    I     ++
Sbjct: 199 HEVLGAFVRGQLMVMLALGVIYSAGLMLVGLELGLLIGMLAGLAAIVPYMGFIIGIGAAL 258

Query: 268 ---YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
                   G+++    +     +   +    L P LVG  I L  +   F ++ G    G
Sbjct: 259 VAGLFQFGGDLYPMLGIVAVFMVGQALEGMVLTPLLVGDRIGLHPVAVIFAILAGGELFG 318

Query: 325 LLGLFIGPVLMALIAVIWKE 344
             G+ +   + A+I V+ + 
Sbjct: 319 FTGVLLALPVAAVIMVLLRH 338


>gi|282865329|ref|ZP_06274381.1| protein of unknown function UPF0118 [Streptomyces sp. ACTE]
 gi|282559802|gb|EFB65352.1| protein of unknown function UPF0118 [Streptomyces sp. ACTE]
          Length = 471

 Score = 86.4 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 45/308 (14%), Positives = 107/308 (34%), Gaps = 21/308 (6%)

Query: 17  MFIILVSLYFLKGFFAPV-------LSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           + ++  +L+ L    + V       ++AL++     P                  +  V 
Sbjct: 88  LLVLAGTLWVLMRVISAVQLVVLAFVAALLVTAMLQPTVVRL-KHLGLPRGLATAVTAVL 146

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              +  +   F+ +  M  +  L  +V    +    + RWL D P  +   ++       
Sbjct: 147 GFVVIGLVGWFVVWQVMDNLDTLSDRVRDGIEE---LKRWLLDSPFHVTEQQI------- 196

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              +       + TN  + I     +   + +++   ++  + +  F   DG  I +   
Sbjct: 197 -NDIAKNLSDTIGTNTEE-ITSAGLQGVTVMVEFLTGLLLAMFSTLFLLYDGRRIWEWTL 254

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L                 + + +   G  I+A+ + + +G   +   VP  V L V   
Sbjct: 255 KLVPAQARPGVAGAGPRAWRTLTAYVRGTVIVALIDAIFIGLGIYFLDVPMAVPLAVFIF 314

Query: 250 IMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           + A +P    +   A+++ + L+   +F A  + +       I    L+PF++G  +++ 
Sbjct: 315 LFAFVPLVGAVVSGALAVVVALVTQGVFTALMVLIVVLAVQQIEGHILQPFILGRAVRVH 374

Query: 309 FLPTFFGL 316
            L     +
Sbjct: 375 PLAVVLSV 382


>gi|322833961|ref|YP_004213988.1| hypothetical protein Rahaq_3267 [Rahnella sp. Y9602]
 gi|321169162|gb|ADW74861.1| protein of unknown function UPF0118 [Rahnella sp. Y9602]
          Length = 354

 Score = 86.4 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 114/354 (32%), Gaps = 14/354 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +PQ I    I+      LYFL G  AP+L A+++ +   WP     +     S T
Sbjct: 10  RRRFTDPQAIALLAILVAGFCILYFLNGILAPLLVAIVLAYLLEWPTVR--LQHVGLSRT 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               +  +    + ++ +  +      +   L++ +             L          
Sbjct: 68  LSVSVVLIIFAGILLLGMFVIAPVTWQQGVNLMTDLPSMLNRFYDFAATLPK-------- 119

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                  +    +   +     +   + + +++    +  L   + +I + + +FF  +D
Sbjct: 120 RYPALVDAGIIDMMAENMRSKLSGLGESVVKYSLASLVGLLTLAIYLILVPMMVFFLLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +         +    +  +V  +   G  +  I  G+     +W+  +  
Sbjct: 180 KEQMLSAVRRVLPRDRGLAGQVWVEMNQQVT-NYIRGKVLEMIIVGVATYLVFWVMDLHY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTLRP 298
            + L V+  +  +IP  GA +    V I  + +  +      LF+   +   +    + P
Sbjct: 239 SLLLAVLVGVSVLIPYIGAMLVTIPVVIVAMFQWGLGADFWTLFVAYLVVQGLDGNVIVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            L    + L  L     +V      G  G+F    L  L+  +           
Sbjct: 299 LLFSEAVNLHPLVIILSVVVFGGLWGFWGVFFAIPLATLVKAVVHVWPDESLNE 352


>gi|227874564|ref|ZP_03992727.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
 gi|227844773|gb|EEJ54919.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
          Length = 478

 Score = 86.4 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 53/329 (16%), Positives = 116/329 (35%), Gaps = 17/329 (5%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           F ++  L+ +   F P   AL +  T  P+    I +K       A+ A ++++ +F V 
Sbjct: 85  FAVVAGLWIIAPVFTPAFLALCMALTLHPVSQWLIRRKVP----AALAALLNIVLMFAV- 139

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
                   ML +  +++  + A    +P  +    I        L          +  ++
Sbjct: 140 --------MLGVTGMIAGALTAVTTELPRYQRKFQILYQDSIHLLERLGDRFNIDMSSVT 191

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
               + + +  +  +A            ++ +  +   F   D   + ++   L  +   
Sbjct: 192 SPAQRVD-LGRVTSYAGSLANSLGSAGTTMFYFTMLAIFLVGDLVVMRRRAAELATYAPG 250

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-G 256
                  R   +  R  FL  T    G  ++     ++  VPS +  G++  +   IP  
Sbjct: 251 LAIS--LRKFARGARMYFLMATFFGAGVAVLDIIVMYIFEVPSPLTWGILAFVANYIPAV 308

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           G  IS     + +L+   +  A  + +   +   +V   ++P   G  + L    +F  L
Sbjct: 309 GFIISMIPPVLMVLVTQGVGPAIGVAVSFIVISTVVFNFVQPRFAGSAVGLNPTISFLSL 368

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +     +G LG  +   +   I  I+ +S
Sbjct: 369 MVWSAVLGPLGAVVSVPMTLFIKAIFVDS 397


>gi|239814371|ref|YP_002943281.1| hypothetical protein Vapar_1364 [Variovorax paradoxus S110]
 gi|239800948|gb|ACS18015.1| protein of unknown function UPF0118 [Variovorax paradoxus S110]
          Length = 420

 Score = 86.4 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 52/342 (15%), Positives = 117/342 (34%), Gaps = 20/342 (5%)

Query: 15  MIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +++  +L S++ L+     F P++ +L++ +   P+      +        A +  V + 
Sbjct: 68  LVVLAVLASVFALRWGQAVFIPLMLSLLLTYALSPLVERL-HRLWLPRWIAAALILVGL- 125

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW--------LSDIPGGMWASELW 123
                 L +  Y       +L   + +A Q      R         L  +       E  
Sbjct: 126 ---FGGLGWTGYSLSGNATQLAESLPIAAQKLGQAMRRSRSANATPLESVQQAAAQLEKA 182

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +  S   + +      +       +  +     +  L+    +  +    +F    G +
Sbjct: 183 AEENSARVAARKGVARVVIERPSFNVRDYLLSGTVGLLEAIGQLTLVAFLTYFALCSGDT 242

Query: 184 ISQQLDSLGEHLFPAYWK--KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             ++L  +             +   + + I    L   +I+   G+  G A+W  GV S 
Sbjct: 243 FRRKLIKITGPSLQKKKVTVHVLDDITRNIERYLLVQILISALVGVTTGLAFWAIGVESA 302

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPF 299
              G+I A+  +IP  G+ I   A  +   ++  ++     +         +V   L P+
Sbjct: 303 AVWGIIAAVTNLIPYVGSVIVMVAAGLVAFLQFNSLEMGILVGGVSLAIHTLVGNLLMPW 362

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           L     ++  +  F G++      G+ GL +G  +  +I  I
Sbjct: 363 LTSRTSRMNPVAVFVGVIFWGWLWGVWGLLLGIPITMVIKSI 404


>gi|28899050|ref|NP_798655.1| permease PerM [Vibrio parahaemolyticus RIMD 2210633]
 gi|153837005|ref|ZP_01989672.1| permease PerM [Vibrio parahaemolyticus AQ3810]
 gi|260365204|ref|ZP_05777761.1| permease PerM [Vibrio parahaemolyticus K5030]
 gi|260876868|ref|ZP_05889223.1| permease PerM [Vibrio parahaemolyticus AN-5034]
 gi|260897349|ref|ZP_05905845.1| permease PerM [Vibrio parahaemolyticus Peru-466]
 gi|260899824|ref|ZP_05908219.1| permease PerM [Vibrio parahaemolyticus AQ4037]
 gi|28807269|dbj|BAC60539.1| permease PerM [Vibrio parahaemolyticus RIMD 2210633]
 gi|149749778|gb|EDM60523.1| permease PerM [Vibrio parahaemolyticus AQ3810]
 gi|308088242|gb|EFO37937.1| permease PerM [Vibrio parahaemolyticus Peru-466]
 gi|308091358|gb|EFO41053.1| permease PerM [Vibrio parahaemolyticus AN-5034]
 gi|308107352|gb|EFO44892.1| permease PerM [Vibrio parahaemolyticus AQ4037]
 gi|308115433|gb|EFO52973.1| permease PerM [Vibrio parahaemolyticus K5030]
 gi|328474413|gb|EGF45218.1| permease PerM [Vibrio parahaemolyticus 10329]
          Length = 356

 Score = 86.4 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 52/340 (15%), Positives = 115/340 (33%), Gaps = 14/340 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +    I+    +++YF     AP+L A+++ +   WP+    +S+     T   +I
Sbjct: 15  DPHAVSLVAILLFGFITIYFFGHLIAPLLVAIVLAYLLEWPVVK--LSRMGVPRTLSVII 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + + ++ L  L      ++  L++ +             L      +        
Sbjct: 73  VLLIFISIMLIALFGLVPTIWTQVGNLINDIPNMYNG-------LQKFIMTLPERHPELA 125

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +L   +++   ++      G   +    +    I     + +I + + +FF  +D   + 
Sbjct: 126 NLQIVETVVTNAKNQALGLGESVVKGSLASLVSIAT-LAVYLILVPLLIFFLLKDKEEML 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +          K+   + + I +   G  +  +  G V    + +  +     L 
Sbjct: 185 RMASGILPK-NRKLANKVWHEMNEQISNYIRGKVLEILIVGGVSYVTFAILDLRYSALLA 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V   +  +IP  GA      V+I  L   G       L L   I   +    L P L   
Sbjct: 244 VAVGLSVLIPYIGAAAVTVPVAIVGLFQWGMTPQFYWLLLAYGIIQALDGNVLVPVLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            + L  +     ++      G  G+F    L  L+  +W 
Sbjct: 304 AVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWN 343


>gi|291537174|emb|CBL10286.1| Predicted permease [Roseburia intestinalis M50/1]
          Length = 462

 Score = 86.4 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 55/372 (14%), Positives = 128/372 (34%), Gaps = 38/372 (10%)

Query: 6   LNPQGIMRWMIMFIILVS--LYFLKGF---------------FAPVLSALIIGFTSWPIY 48
           L PQ ++  +++F+      L+F   +                 P++  ++I +   PI 
Sbjct: 29  LKPQYVIIALVVFVTFCCCILFFFMIYRYNGFTDFWKKLSLILQPIIIGVVIAYLLNPIM 88

Query: 49  S------------SFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV 96
                           SK +   T   +  T S++ L  + +L +          + S +
Sbjct: 89  KFLEGHLLKFLEPRMKSKCKAKKTSRGIAITGSLVFLVGICVLLVAAIVPSISASIQSMI 148

Query: 97  VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
               Q    + +W+ ++  G   +EL +        +    ETF + +    +  + +  
Sbjct: 149 TSFPQEAKNLTKWVDEVTNGD--TELASMIQQGVDKITDTVETFFEDDIFSKVQTYLTSI 206

Query: 157 GMIF---LDYCLSIIFMIIALFFFYRDGFSISQQ----LDSLGEHLFPAYWKKISRIVPK 209
                  + + L++I  +I   +   D    + Q    + ++ + +         R   +
Sbjct: 207 TSGVIYGVKFVLNVIVGLIISVYVMADQEHFAGQAKKIVYAMFKPVRANVIVDTVRKSNE 266

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
           +      G  + +   G++      +  +P  V + VI  +  +IP   P      S  +
Sbjct: 267 IFSGFISGKILDSAIIGVLAYIVLAIMKMPDTVLVAVIIGVTNVIPFFGPFIGAVPSFII 326

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           ++  N        ++  +   I    + P ++G    L      F ++      G  G+ 
Sbjct: 327 IVLQNPIQGLYFLIFIVVLQQIDGNIIGPKILGSSTGLSAFWVVFAILVFGGLWGFPGML 386

Query: 330 IGPVLMALIAVI 341
           +G  LMA+I  +
Sbjct: 387 LGVPLMAVIYYV 398


>gi|226365345|ref|YP_002783128.1| hypothetical protein ROP_59360 [Rhodococcus opacus B4]
 gi|226243835|dbj|BAH54183.1| hypothetical membrane protein [Rhodococcus opacus B4]
          Length = 403

 Score = 86.4 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 89/265 (33%), Gaps = 13/265 (4%)

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            V  + +    +  +    + +  EL +K          V  WL   P  +         
Sbjct: 93  LVLFIAVVAGIIAGIVPSVVRQAPELANKATQGIN---QVQDWLKGPPINLQ-------- 141

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                   I +           I               +++  +++  FFF +DG     
Sbjct: 142 -DDQIDQGIHTIIVKVQESGTVIASGVFTGVSTASSLLITLGLVLVLSFFFIKDGPRFIP 200

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L S+       + +++   +   +        ++A+ + + +G+   + GVP    L +
Sbjct: 201 WLHSVSGGRAGRHLEEVLGRMWDTLGGFIRTQALVALVDAVFIGAGLLILGVPLAPVLAI 260

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +T I   IP  GA ++     +  L+   +  A  + +   +   I    L+P L    +
Sbjct: 261 LTFIGGFIPIVGAFVAGALAVLVALVANGLTTAVIVLIIILVVQQIEGNVLQPVLQSKSM 320

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFI 330
           KL  +     +  G    G++G F+
Sbjct: 321 KLHAVVVLLAVTAGGSVFGIVGAFL 345


>gi|118590149|ref|ZP_01547552.1| permease, putative [Stappia aggregata IAM 12614]
 gi|118437121|gb|EAV43759.1| permease, putative [Stappia aggregata IAM 12614]
          Length = 365

 Score = 86.4 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 53/344 (15%), Positives = 118/344 (34%), Gaps = 16/344 (4%)

Query: 5   MLNPQGIMRWMIMFIIL-VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           M   + +  W+I  I+  + LY       P ++ + + +   P+                
Sbjct: 1   MTLRRQVQFWLISLIVFCLFLYVFSSVLLPFVAGMAVAYLLDPVCDRLEKLGMGRMW--- 57

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
             AT+ ++  F+V L+  F   +  +     ++ L  +    + R L  +    + + L 
Sbjct: 58  --ATLCILFAFVVILVMFFILLLPLLGN---QLSLFLEKFPELIRKLQALLSENFPANLA 112

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRD 180
           +      + L+      +   G  FI + A      G   L      +   +  F+   D
Sbjct: 113 SVAGISAEDLQSSMSNLIG-QGASFIGKLAQSLWSGGQALLSILSLFVITPVVAFYLLLD 171

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +  ++DS       +  + ++R + + +     G   + +  G     +  L G+  
Sbjct: 172 WDRMVARIDSWLPRPHLSEIRGLAREMDQAVAGFVRGQVSVCLILGSFYAISLALVGLNF 231

Query: 241 HVALGVITAIMAMIPG---GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
            + +G+   +++ IP    G  +  +     +           +     +  F+    L+
Sbjct: 232 GLLIGMAAGLVSFIPFVGAGLGLVLSLGVAIVQFWPEWPWIVAVAAVFGVGQFLEGNILQ 291

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           P LVG    L  +   F L       G +G+ I     A+I V+
Sbjct: 292 PKLVGDSTGLHPVALMFALFAFGYLFGFVGMLIAVPAAAMIGVL 335


>gi|58039452|ref|YP_191416.1| hypothetical protein GOX0988 [Gluconobacter oxydans 621H]
 gi|58001866|gb|AAW60760.1| Hypothetical transmembrane protein [Gluconobacter oxydans 621H]
          Length = 419

 Score = 86.4 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 49/349 (14%), Positives = 115/349 (32%), Gaps = 15/349 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +RE +      +  + +  +  SLYF      P + AL++             +      
Sbjct: 44  LREHLNIRDMCVLILTILAVFYSLYFTAPILLPFVFALVLNLLMIAPMRFLTQRLHLPRH 103

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++  V +  +                      +  A Q    +   L+ + G +   
Sbjct: 104 LAGLMLIVMMFGIV-------GGIATTISVPAAGWITRAPQTLPALQSKLALLSGPIDVV 156

Query: 121 E-----LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
           +     L      H  S            G   + R  S       +       M++ LF
Sbjct: 157 QRDYMRLSAMFSGHSGSTHTTHGVSGTIGGETALSRLGSSVLAGTRELAGGFFSMLLMLF 216

Query: 176 FFYRDGFSISQQLDSLGE-HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           F   +G ++ ++   +   +       +++  + + +    + +T++ +G GLV     W
Sbjct: 217 FLMTEGDTLLRRCVEIMPTYAKKRRLVEMATQIEQNVSLYLVTITMMNLGVGLVNMIQCW 276

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
             G+P+ +  GV+  ++  IP   P+        + L    ++  A        +   + 
Sbjct: 277 ATGMPNPLLWGVLAFLLNYIPIIGPLTGVVVYFVVGLFSFPSLLYALLPPSIYLLIHVLE 336

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            +T+ P L+     L  +     L+      G+ G F+   ++A+  ++
Sbjct: 337 GETITPMLLARRFTLNPVFVMGSLLFWDWMWGISGAFLSVPMLAVFKIV 385


>gi|293394974|ref|ZP_06639262.1| PerM family permease [Serratia odorifera DSM 4582]
 gi|291422502|gb|EFE95743.1| PerM family permease [Serratia odorifera DSM 4582]
          Length = 398

 Score = 86.4 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 49/357 (13%), Positives = 118/357 (33%), Gaps = 14/357 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +PQ I   +I+      LYF  G   P+L A+++ +   WP     + +   S T
Sbjct: 52  RRRFTDPQAIALLVILLAGFCILYFFHGILTPLLVAIVLAYLLEWPTAR--LQRIGCSRT 109

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           + A +  V    + ++ +L +      +   L++ +            + + +P      
Sbjct: 110 WAASMVLVVFGGIAMLLVLVVAPTAWQQGINLMTDLPGMVN---QFYNYAATLP-----K 161

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                  +    +   +     +   + + +F+    +  L   + +I + +  FF  +D
Sbjct: 162 RYPALVDAGIIDMMAENLRARLSGLGESVVKFSLASLVGLLTLAIYLILVPLMAFFLLKD 221

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +         +     + + I +   G  +  +  G+     + +  +  
Sbjct: 222 KEQMLNAVRRVLPRNRGLAGQVWIE-MNQQITNYIRGKVLEMVIVGVATYLVFIILDMRY 280

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V+     +IP    +  T   +   +   G   +   L +   +   +    L P
Sbjct: 281 SLLLAVLVGFSVLIPYIGAVLVTIPVVVVAMFQWGVGADFWTLIVAYLVVQGLDGNLLVP 340

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            L    + L  L     ++      G  G+F    L  L+  +       +  + EK
Sbjct: 341 ILFSEAVNLHPLVIILSVIVFGGLWGFWGVFFAIPLATLVKAVVHAWPDDMLVDMEK 397


>gi|149914373|ref|ZP_01902904.1| hypothetical protein RAZWK3B_20271 [Roseobacter sp. AzwK-3b]
 gi|149811892|gb|EDM71725.1| hypothetical protein RAZWK3B_20271 [Roseobacter sp. AzwK-3b]
          Length = 354

 Score = 86.4 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 51/340 (15%), Positives = 119/340 (35%), Gaps = 14/340 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             + +++L+FL     P +    I +   P+      +   S      + T+  + +F++
Sbjct: 16  AAVFVLALWFLGDVILPFVLGGAIAYFLDPVADRL-QRMGASRALAVSLITLGALMVFVL 74

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             L +    + +   L+            V               +  ++ +  QSL  +
Sbjct: 75  MALLVIPTLVQQSLALIDTAPQFFNKFQQVLT--------ERFPAIVDENSTLRQSLIAV 126

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            ET  +  G   +           L+  L  + + +  F+   D   +  ++D L     
Sbjct: 127 GETIRERGGE--VLNSLLSSAASLLNVVLLFVIVPVVAFYLLYDWDRMVGRIDELLPRDH 184

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               ++++  + + + S   GM  + +  G     A  L G+   + +G +  ++  IP 
Sbjct: 185 APVIRRLAGEIDQTLASFIRGMGTVCLILGTYYAVALMLVGLQFGLVVGALAGLITFIPY 244

Query: 257 GAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
              +   A++I L +    G+  +   +              L P LVG  + L  +   
Sbjct: 245 VGALVGGALAIGLALFQFWGDWVSIGLVVAIFVAGQVAEGNFLTPKLVGSSVGLHPVWLI 304

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           F L       G +G+ +   + A I V+ +  +    +++
Sbjct: 305 FALSVFGALFGFVGMLVAVPVAASIGVLARFIVAQYMDSR 344


>gi|256381030|ref|YP_003104690.1| hypothetical protein Amir_7052 [Actinosynnema mirum DSM 43827]
 gi|255925333|gb|ACU40844.1| protein of unknown function UPF0118 [Actinosynnema mirum DSM 43827]
          Length = 402

 Score = 86.4 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 86/239 (35%), Gaps = 3/239 (1%)

Query: 101 QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIF 160
           +    V   LS I   +    L    L   Q +  L ET     G   I   A       
Sbjct: 108 ELQNQVTASLSTIRDWLKDGPLHLSELQLQQYVDQLLETVKANQGE--ITSGALTTAATV 165

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
            +    ++  +  L FF  DG  I + +  +      A      R     + S      +
Sbjct: 166 GELLTGLVLALFTLIFFLHDGDGIWRFITRIVPRDVRARADLAGRRGFASLVSYVRATAV 225

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNAT 279
           +A+ + + +G   W+ GVP  V L  +  + A IP  GA I+     +  L+      A 
Sbjct: 226 VAVVDAVGVGIGLWIVGVPLVVPLAALVFLGAFIPIVGAVITGVVAVLIALVANGPVAAA 285

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
            +       + +    L+P L+G  +KL  L     +  G+   G+ G  +   L+A++
Sbjct: 286 VVLAILIGVMQLESHVLQPLLLGRAVKLHPLAVVLAISTGLVVAGIAGALLSVPLLAVL 344


>gi|255656234|ref|ZP_05401643.1| hypothetical protein CdifQCD-2_11174 [Clostridium difficile
           QCD-23m63]
 gi|296450331|ref|ZP_06892090.1| conserved hypothetical protein [Clostridium difficile NAP08]
 gi|296878743|ref|ZP_06902746.1| conserved hypothetical protein [Clostridium difficile NAP07]
 gi|296260824|gb|EFH07660.1| conserved hypothetical protein [Clostridium difficile NAP08]
 gi|296430250|gb|EFH16094.1| conserved hypothetical protein [Clostridium difficile NAP07]
          Length = 364

 Score = 86.4 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 47/326 (14%), Positives = 109/326 (33%), Gaps = 2/326 (0%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L     P + A ++ +   P+     SK      +  ++    ++ + I  +LF     
Sbjct: 36  LLMSLLTPFIIAFVLAYIFNPLVKFLESKLNFKRIYSLLLTYGVLIVILISFILFTVPSI 95

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +  + +LV+++             L      +  + L          +   S   + + G
Sbjct: 96  VNSLADLVAQIPTYIDKTEQFLFDLGKSLQSVDPNTLKEYGDKIMSVMPKFSNLLIGSLG 155

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              I       G   + + L  I     L    +      + +       +  +  ++ +
Sbjct: 156 G--IFSTTFSVGKFIVQFLLGFIICFYILLEKEKFLLFTKKVVYISLGKKYGDFIIELCQ 213

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   I   F G  + +   G++ G   +       +  G I  +M M+P   P+   A 
Sbjct: 214 SLNLNIGKYFTGKILDSFIVGVLSGIGLYFLKSEYALLFGTIMGVMNMVPYFGPVIGMAP 273

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            + + +  N   A    ++  I   +    + P +VGG + L    T   +  G    G+
Sbjct: 274 VVIINLFSNPTTALTSLIYLIIIQQVEVTFIEPKIVGGQLGLSPFFTILAVTVGGGFFGI 333

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKE 351
            G+ +   +M +I + + E +    +
Sbjct: 334 PGMILSAPVMGVIKIYFCEFVNRRHD 359


>gi|326789877|ref|YP_004307698.1| sporulation integral membrane protein YtvI [Clostridium lentocellum
           DSM 5427]
 gi|326540641|gb|ADZ82500.1| sporulation integral membrane protein YtvI [Clostridium lentocellum
           DSM 5427]
          Length = 377

 Score = 86.4 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 59/333 (17%), Positives = 124/333 (37%), Gaps = 7/333 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES----STFLAVIATVS 69
            MI+ I+L++   +K     + +  I+ +    + + F++   +          +++ ++
Sbjct: 18  VMILVILLIAFVIIKLNILGLFAPFIVAWLFASLLNGFVTWINKKTGLPRALGTILSMLT 77

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++   +  L FL      ++  +   +    +  I     L +     + +      +S+
Sbjct: 78  ILSGVLGLLTFLIKKLWEQVVAIAYNLPSLTEELIMQVGQLEERFSSFFGTGKAPSAISN 137

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              L       L +     IP  A        D  L  + M++A FF  +D + I   + 
Sbjct: 138 LDQLIEQIMDKLSSYLGSVIP-VAYNAVSKVPDIVLFTVVMLVATFFMTKDYYKIKDFVK 196

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +            + + V   I        I+      +     ++  V   + L VI A
Sbjct: 197 AQFSDTIVDKVVIMQKGVLSAIGGYVRTQVIMMSITFSICMVGLFIFQVSYTLLLSVIIA 256

Query: 250 IMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I+  +P  G+       ++Y L+ G    A  L     I +F+  +   P ++   I + 
Sbjct: 257 IVDALPVFGSGTILIPWALYNLVTGQYTLAIGLLCIYGI-IFVTRQIFEPKILSTQIGVY 315

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L T   +  G RTMG +GL IGP L  ++ ++
Sbjct: 316 ALVTIMAVYIGYRTMGFIGLIIGPALAVILKML 348


>gi|288958154|ref|YP_003448495.1| hypothetical protein AZL_013130 [Azospirillum sp. B510]
 gi|288910462|dbj|BAI71951.1| hypothetical protein AZL_013130 [Azospirillum sp. B510]
          Length = 355

 Score = 86.4 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 52/342 (15%), Positives = 122/342 (35%), Gaps = 9/342 (2%)

Query: 5   MLNPQGIMRWMI-MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           M   + +  W+I + + +++L+ L     P +  L I +   P        +        
Sbjct: 1   MTPAKQLRFWLIGLGLFVLALWLLSDMLLPFVVGLAIAYLLDPAVDRLEVARLPR----W 56

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           +  T+ ++   +V ++       L   ++   + +   +   V   L  IP         
Sbjct: 57  LGTTLVLLGFLLVMVMMALLLLPLLQGQIAHLLEVLPTYATLVKERL--IPALNRFIHRL 114

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +           +      + +  I       G+   D    +    +  F+  RD   
Sbjct: 115 PQDDVERLRAAAGAYAGELASLVGNIVTRILSGGLALFDIVTLMFITPVVAFYILRDWDL 174

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  ++DS          ++ +R V   +     G   + +  G+    A  +AG+   + 
Sbjct: 175 MVGKVDSWLPRQHAETVREQAREVNATLSGFLRGQATVCVVLGVFYALALSVAGLDFGLV 234

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLV 301
           +G++  +++ IP  G    F + +   L++ +      + +   +    V+   L P LV
Sbjct: 235 IGLLAGLLSFIPYVGTLFGFVSSTGLALLQFDELWRVGIVVGIFLFGQAVEGNVLTPKLV 294

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           G  + L  +   F L+ G    G +G+ +   + A+I V+ +
Sbjct: 295 GDKVGLHAVWVMFALLAGGSLFGFVGVLLAVPVAAVIGVLTR 336


>gi|23013849|ref|ZP_00053702.1| COG0628: Predicted permease [Magnetospirillum magnetotacticum MS-1]
          Length = 360

 Score = 86.4 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 55/347 (15%), Positives = 115/347 (33%), Gaps = 17/347 (4%)

Query: 4   TMLNPQGIMRWMIMF-IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +M + Q +  W+I   + LV LY L+    P ++ + + +   P+          S T  
Sbjct: 2   SMSSGQRLRFWLIGGTVFLVLLYLLRSVMLPFVAGMAVAYFLDPLADRMERA-GLSRTLA 60

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV----VLANQHGIPVPRWLSDIPGGMW 118
             I  +    +  + L  L      ++   V KV           +P+   +        
Sbjct: 61  TGIICLVFFGIMGLGLTLLAPIIQQQVVTFVHKVPAYAEALQTRAMPLLEEVYRHLSADD 120

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +L +   S+  +        LK              G+  +     +    +  F+  
Sbjct: 121 LEKLRSSVGSYAGTAVGWGMGVLKGVLSG---------GIAVMSILSLLFITPVVTFYML 171

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           RD   +  ++D+          +   R + + I     G   + +   +  G    L G+
Sbjct: 172 RDWDHMIAKVDTWLPRHHAEVIRFELREIDRTIAGFVRGQATVCMVLAVFYGVGLTLTGL 231

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--DKTL 296
              + +G+ T + A +P    +     S+ L +           +     +  V     L
Sbjct: 232 DLGLMIGLGTGLGAFVPYVGMLIGLIASVGLALAQGGEWHLLGGVGIVFLVGNVLEGNFL 291

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            P LVG  + L  +   F L+ G    G +G+ +     ++I V+ +
Sbjct: 292 TPKLVGDRVGLHPVWIIFSLLAGGALFGFVGILLAVPAASVIGVLTR 338


>gi|307324926|ref|ZP_07604131.1| protein of unknown function UPF0118 [Streptomyces violaceusniger Tu
           4113]
 gi|306889424|gb|EFN20405.1| protein of unknown function UPF0118 [Streptomyces violaceusniger Tu
           4113]
          Length = 371

 Score = 86.4 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 52/328 (15%), Positives = 114/328 (34%), Gaps = 14/328 (4%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P++  L++   +WP+ +  +          A   TV  + +    +  +      +  EL
Sbjct: 47  PLVVGLLLTTLTWPL-ARVLRGLGWPPALAASAVTVLFLLVVTGIVALIAVPVASQSGEL 105

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
             +V    Q    V  W S  P  +  +++     +    L+  + + + T         
Sbjct: 106 TDRVTEGIQ---QVREWASGPPLNISDAQITKATDTAADRLQSSAGSLVTTIVTGV---- 158

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
                   +D  ++ +  +  +FFF +DG      L              ++      + 
Sbjct: 159 -----STVIDGVVTAVLALFLMFFFLKDGPRFLPWLTRQLPGRLATDIPVVAARGWDTLG 213

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLI 271
           +      ++ + + + +G   W  GVP  + L V+T I A +P  GA  +     +  L+
Sbjct: 214 AFVRSQALVGLLDAVFIGLGLWALGVPLVLPLAVLTFICAFVPIVGALFAGGVAVLIALV 273

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
                +A        +   +     +P +    + L        +  G    G++G  + 
Sbjct: 274 SNGSTDALIALAIIVVVQQLEGNVFQPMIQSRGLGLHAAVILLAVTLGSSLAGIVGSLLA 333

Query: 332 PVLMALIAVIWKESIMAIKENKEKISSN 359
             + ALIAV+W      +    E++ +N
Sbjct: 334 VPVAALIAVVWNYLREQLSHPPEELENN 361


>gi|297191063|ref|ZP_06908461.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297150746|gb|EDY67165.2| integral membrane protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 367

 Score = 86.4 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 47/350 (13%), Positives = 120/350 (34%), Gaps = 17/350 (4%)

Query: 14  WMIMFIILVSLYFLKGFFA---PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +++ +  V+L+ L   ++   P++  L++   +WP+ + F+ +        A   TV  
Sbjct: 21  LLVLVMTAVALWLLGRMWSVVWPLIVGLLLTTLTWPV-TRFLRRHGWPPALAASTVTVLF 79

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +   +  +  +      +  EL   VV   Q        L +   G   +    +     
Sbjct: 80  LLAAVGVVALIAVPVASQSGELTDGVVEGIQK-------LREWAAGPPLNIGDDQISGAF 132

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +     +  + +     +    +    +        +        F +DG      L  
Sbjct: 133 DAGVARIQDSVGSMVTAVVTGLGTVVNGVVTTVLALFLMFF-----FLKDGPRFLPWLAR 187

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                       ++    + + +      I+ + + +++G   W+  VP  + L V+T +
Sbjct: 188 QLPGRLATDVPTVAARGWETLSAFVRSQAIVGLLDAVLIGIGLWILDVPLVLPLAVLTFV 247

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            A +P  GA  +     +  L+   + +A  +     +   +     +P +    + L  
Sbjct: 248 SAFVPIVGALFAGLVAVLIALVSNGLTDALIVLAIIVVVQQLEGNVFQPMIQSRGLGLHA 307

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                 +  G    G++G  +   + ALIAV+W      + +  ++  ++
Sbjct: 308 AVILLAVTLGGSLAGIVGSLLAVPVAALIAVVWNYLREQLGDPSQEPGTD 357


>gi|314986760|gb|EFT30852.1| conserved hypothetical protein [Propionibacterium acnes HL005PA2]
          Length = 386

 Score = 86.4 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 60/329 (18%), Positives = 124/329 (37%), Gaps = 14/329 (4%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            PV  AL++    WP+ +   S+        + I  + ++ L       +     L+ ++
Sbjct: 64  VPVAVALMLTAAMWPLANWL-SRHHIHRGIASGICLLLLVILVGGVFTLVGAQIALQWRQ 122

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L  + V + +  +   +WL+  P     ++L T  +   ++    S+          I  
Sbjct: 123 LGDQSVASFKQAL---QWLAKSPLHTNEAQL-THLMQKAEAAMAGSQ--------GRIAS 170

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
            A+  G     +   ++  + A FFF  +G  ++++   L      A     ++     +
Sbjct: 171 TAAAAGSQIGRFGAGLVMALFATFFFVYEGDKLAEKSAVLIPREHRAAILDAAKRGWGAL 230

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLL 270
            +      I+A  +GL  G    + G    VA+G +T I+A +P  GA  +       +L
Sbjct: 231 VAYVRAAVIVAFVDGLGAGIGAAIIGSSMSVAIGALTFILAFVPIVGALTAGVVAVGVVL 290

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +    F A  + +     + I    L+PFL+G  + +  L    G+  G    G++G   
Sbjct: 291 VTLGFFKAFIMLIVFVAVMQIEGHVLQPFLLGKAVSIHPLIVLLGIAVGAIISGIVGALF 350

Query: 331 GPVLMALIAVIWKESIMAIKENKEKISSN 359
              ++A      K        N+   + +
Sbjct: 351 AIPIVAFGVAFIKALNPETPANEVPPNHD 379


>gi|313500167|gb|ADR61533.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1]
          Length = 357

 Score = 86.4 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 51/342 (14%), Positives = 123/342 (35%), Gaps = 14/342 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             +I V LY L     P L  +++ + + P+           +          V+ +F +
Sbjct: 13  ALLIAVLLYSLHNILTPFLVGIMLAYLADPLVDRLERLGLSRTW--------GVVVVFGL 64

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK---HLSHPQSL 133
             L L    ++ +  L  ++V   +    +  WL  +        L              
Sbjct: 65  FTLLLLALLLVLVPMLAKQLVRLYELAPQMLDWLEHVALPWVQGRLGLADGFWKFDKIKA 124

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            I +     T+ +  +   A+   +  + +  +++ + +  F+  RD   +  +L  L  
Sbjct: 125 AIGAHMGQTTDIVGMLLSQATASSLALVGWLANMVLIPVVGFYLLRDWDLMMGKLRGLLP 184

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                    ++    +V+ +   G  ++ +  G++  +   L G+   + +G++  + A+
Sbjct: 185 RQREPQVMGLAGECHEVLGAFVRGQLMVMLALGVIYSAGLMLVGLELGLLIGMLAGLAAI 244

Query: 254 IPGGAPISFTAVSI---YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +P    I     ++        G+++    +     +   +    L P LVG  I L  +
Sbjct: 245 VPYMGFIIGIGAALVAGLFQFGGDLYPMLGIVAVFMVGQALEGMVLTPLLVGDRIGLHPV 304

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              F ++ G    G  G+ +   + A+I V+ +      KE+
Sbjct: 305 AVIFAILAGGELFGFTGVLLALPVAAVIMVLLRHVHDLYKES 346


>gi|307352761|ref|YP_003893812.1| hypothetical protein Mpet_0600 [Methanoplanus petrolearius DSM
           11571]
 gi|307155994|gb|ADN35374.1| protein of unknown function UPF0118 [Methanoplanus petrolearius DSM
           11571]
          Length = 346

 Score = 86.4 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 50/343 (14%), Positives = 117/343 (34%), Gaps = 20/343 (5%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           + + ++         ++ A        P       K    +   A I T  V    +V  
Sbjct: 19  VAVSAIAVFSTLIGVLIVAAAFAIVLMPAQRYLGLKM--RAGISAAIITTLVAVFIVVAF 76

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
                  + +    ++ +            WL+ +   + A E+             + E
Sbjct: 77  YVTAVVIINDSGFFLNMIESIT-------AWLNSLLFNIKAEEISGTFAVSSDVFLEILE 129

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                        ++     +     +    + ++++ F   G +I     S+       
Sbjct: 130 K---------TEDWSLELLSMAPQIIMKTFILFLSMYLFLVLGDNIHLDFISIMPRSVMP 180

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             K   + +  ++ + F    ++A    +     +++ G    +   V++ ++A+IP   
Sbjct: 181 SIKIFEKSIVDMLYAVFNVHIVVAFIVFIASFPVFYILGYDHILFFAVLSTVLALIPVLG 240

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGA--IELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           P+   A      I  + +    + +  A  +   I D  +RPFL+G   K+  +  F   
Sbjct: 241 PVVMIAFLALYAISISDWQGLIIIIAIAWPLLCAIPDWWIRPFLMGKRTKISGVIMFIAF 300

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            GG+  MG++G  IGPV++AL+   ++  I       + +  +
Sbjct: 301 FGGIMAMGVVGFIIGPVIVALVIACYRIIIAGHVIPADPVPRD 343


>gi|212710881|ref|ZP_03319009.1| hypothetical protein PROVALCAL_01949 [Providencia alcalifaciens DSM
           30120]
 gi|212686578|gb|EEB46106.1| hypothetical protein PROVALCAL_01949 [Providencia alcalifaciens DSM
           30120]
          Length = 361

 Score = 86.4 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 50/355 (14%), Positives = 115/355 (32%), Gaps = 14/355 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +PQ +  + ++ I  + ++F     AP+L A+++ +   WP +   + +   S  
Sbjct: 10  RRRFADPQAVALFSLLVIGFLVIFFFSSILAPLLVAIVLAYLLEWPTH--LLQRLGLSRV 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               I       +  + +L +      +   LV+ +            +   +P    A 
Sbjct: 68  LAVSIILTLFAGISAMVILIIAPTAWQQGINLVADLPNMVNR---FSEFARRLPEQYPAL 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                      +++        +     +               + ++ + + +FF  +D
Sbjct: 125 VDAGIIDMMADNVRSRLSVVADSVVKASVASLIG-----IFTLAVYLVLVPLMMFFLLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I++    L          K+   + + I +   G     +  G+     +    +  
Sbjct: 180 KEKITKSFLKLLPK-NRLLVSKVWLEMNQQITNYLRGKVTEMVIVGVFTYIGFAYFDLRY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNI-FNATCLFLWGAIELFIVDKTLRP 298
            V L V+  +  +IP  GA ++   V +  L +  I      LF+   +   +    + P
Sbjct: 239 SVLLSVLVGVSVLIPYIGAVVATIPVVLVALFQWGIGTEFWSLFIVYLVIQGLDSNIVVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L    + L  L     +V      G  G+F    L  LI  +       + + +
Sbjct: 299 LLYSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVINAWPQDLNDAE 353


>gi|148556366|ref|YP_001263948.1| hypothetical protein Swit_3464 [Sphingomonas wittichii RW1]
 gi|148501556|gb|ABQ69810.1| protein of unknown function UPF0118 [Sphingomonas wittichii RW1]
          Length = 406

 Score = 86.4 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 51/317 (16%), Positives = 106/317 (33%), Gaps = 14/317 (4%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           FF PV  AL+I     P+      +   S    A++  +  + L    +  +        
Sbjct: 67  FFLPVTIALVIAVAMVPLLEWLERRGLPSP-LAALLCVLIFLGLANAAIASVIIPATEWF 125

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             L S++ L  ++  P+                + + +       + +    +T  +   
Sbjct: 126 ARLPSRIRLIRKNLSPLID----------IYSAFERFVDETMGSLLRNTAHGRTVTVQSP 175

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ-LDSLGEHLFPAYWKKISRIVP 208
                          + ++F  + ++FF      + ++ + S G         ++ + + 
Sbjct: 176 NSLFDYVASSAPHALVQLVFATLVVYFFLSSWTRMRRRTITSRGSFSSAMTTARVIQDMV 235

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA--VS 266
               +    +T + IG G+++    W AG+PS +  G + AI+  IP   PI        
Sbjct: 236 DRTSAYLATITAVNIGMGILVSLMLWFAGMPSPIMWGGLVAILNYIPYFGPIVAAGLLAV 295

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
             L+   ++  A    L       +    L P LVG  + +  L     L       G  
Sbjct: 296 GGLMTFSDLGYALVPALLFVAVHLVEANVLTPMLVGRRLTINPLLILVALSFWSWVWGTA 355

Query: 327 GLFIGPVLMALIAVIWK 343
           G  +   L+ ++  I  
Sbjct: 356 GALLAVPLLIILKTILD 372


>gi|315649616|ref|ZP_07902701.1| hypothetical protein PVOR_30708 [Paenibacillus vortex V453]
 gi|315275089|gb|EFU38464.1| hypothetical protein PVOR_30708 [Paenibacillus vortex V453]
          Length = 359

 Score = 86.4 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/331 (12%), Positives = 119/331 (35%), Gaps = 10/331 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F      P++ +    +   P+      +K   S        ++++ +++V       + 
Sbjct: 37  FFSIILVPLMLSGFFYYLLRPLVDLLEKRKLNRS--------LAILLIYVVFAGIFTGFI 88

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +     L  +++    +   +   L +       + L+ +      +       +L   G
Sbjct: 89  IGVWPSLRDQIIALVDNAPALFAALGEQLQEWENNGLFKEIFPEDSNPLTQLTDYL-NQG 147

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
             F+  +      I  ++ + +    I L++  ++G    + + S   + F      +  
Sbjct: 148 FTFLTNYIMNLFSIVSNFAIVLFTFPIMLYYMLKEGGKFGKMIVSFMPNRFKEVGASVLD 207

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   ++   +G  ++ +  G+++   + + G+P  + L V+      IP    I  +  
Sbjct: 208 EINSALKGFIVGRVLVNLALGVLMYFGFLIIGLPYALLLTVVAFFANFIPFIGAILSSIP 267

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            + +    +   A    +       + D  + P++ G  + +  +     ++ G    G+
Sbjct: 268 IVIIGFIQSPGTAIWSLVVILAAQQVQDNLIGPYIFGKQLAIHPITIIILVLVGQDLGGI 327

Query: 326 LG-LFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G L + PV M +  V+ +   +  KE  EK
Sbjct: 328 IGILIVVPVYMIIKIVVTRVYQLFFKEKWEK 358


>gi|154247058|ref|YP_001418016.1| hypothetical protein Xaut_3129 [Xanthobacter autotrophicus Py2]
 gi|154161143|gb|ABS68359.1| protein of unknown function UPF0118 [Xanthobacter autotrophicus
           Py2]
          Length = 418

 Score = 86.4 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 123/335 (36%), Gaps = 19/335 (5%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +  ++L+ L G   P ++ +++ +   P+ +    +   + T  A++    ++ L ++
Sbjct: 69  LILTAIALWLLSGILLPFVAGIVLAYFLNPVVARLE-RIGVARTLSALVVVGIMLLLVVL 127

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS--ELWTKHLSHPQSLK 134
             L        +M E + ++          P +++ + G +     E  +  +       
Sbjct: 128 FFLLALPLLSSQMFEFIQRL----------PAYVARLQGLLTEENREWLSGIVGDRLPDM 177

Query: 135 ILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
             S + L T G+  +    S     G   +     ++   + +F+   D  ++   +D L
Sbjct: 178 QRSISDLMTQGVSHLVGLLSSVWSGGQALIALFALLVVTPVVVFYILCDWNNMVAYVDQL 237

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                    + ++R +   +     G  ++ +  G     A  +AG+   + +G+++ ++
Sbjct: 238 VPLPHRTEVRGLARAMDMAVAGFVRGQAMVCLLLGTFYAVALTMAGLNFGLLIGIVSGVI 297

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF--IVDKTLRPFLVGGPIKLP 308
             IP  G+   F       +++          +         I    L P LVG  I + 
Sbjct: 298 TFIPYVGSLTGFVLAMGVAIVQFFPDWGMIGTVLAIFVTGQTIEGYVLSPKLVGDSIGVH 357

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            +   F L       G +GL +   L A+  V+ +
Sbjct: 358 PVWLMFALFAFGYLFGFVGLLLAVPLTAVTGVLVR 392


>gi|297585066|ref|YP_003700846.1| sporulation integral membrane protein YtvI [Bacillus
           selenitireducens MLS10]
 gi|297143523|gb|ADI00281.1| sporulation integral membrane protein YtvI [Bacillus
           selenitireducens MLS10]
          Length = 394

 Score = 86.4 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/320 (11%), Positives = 105/320 (32%), Gaps = 12/320 (3%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P + A ++ +   P+   F       +     +  +  +   I  +  +    +   + +
Sbjct: 47  PFIIAAVLVWMFHPLIRFFRKMLRMPNMLAVFLTVLLGLSAVIGSITGIIALIVFGFRRI 106

Query: 93  VSKVVLANQ----------HGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
            + +    Q          +    P W          +      L +             
Sbjct: 107 SAFLPEWIQTTAIQAQDFFNQSIFPLWQQFSGAVDSLTPEQQTTLQNGIERLGTQLAEGS 166

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           TN    +    +   +    + +  +F+ IA +F  +D   +  +   +         + 
Sbjct: 167 TNIGQGMADGLASVIIFVPSFLIVFLFVFIAFYFIGKDWDRMFSKAYEITPAFILKKARA 226

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
              +    +        I+     +V+     +  V   + + +I  I  ++P  G+   
Sbjct: 227 FKTMFQYRVFGFVRAQLILMFIASIVVLIGLLILRVEHALTIAMIVGIAEILPYLGSGTI 286

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
                +Y+L+ G I     L +   + +  + +++ P ++   + L  L     L  G +
Sbjct: 287 LIPWFVYMLLTGEISMGIGLAVVYGVTVG-IRQSIEPKVLSSSMNLNALGVLISLFVGFQ 345

Query: 322 TMGLLGLFIGPVLMALIAVI 341
             G++G+F+GP ++ ++ + 
Sbjct: 346 LFGVVGVFVGPFILVILVIF 365


>gi|209548699|ref|YP_002280616.1| hypothetical protein Rleg2_1096 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534455|gb|ACI54390.1| protein of unknown function UPF0118 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 374

 Score = 86.4 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 44/326 (13%), Positives = 104/326 (31%), Gaps = 11/326 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  Q      ++   +V LY       P ++ + I +   P+      +   S     V 
Sbjct: 10  LKRQIFFWLAVLVFFIVFLYVFSSILLPFIAGMAIAYFLDPVADRLE-RLGMSRMMATVG 68

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             ++ +  F + L+ L    + +  +   ++               +     W       
Sbjct: 69  ILIAFVITFALALMILIPVLVSQFNDFAERLPGYISQLQQFIDNSKNSLLPDWVRSQAGT 128

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
              +   +      FL       +       G   +D    ++   +  F+   D   + 
Sbjct: 129 LKDNFSGILSEGMGFLTG-----LFAQIWNSGKAIVDVISLLVVTPVVAFYILLDWDRMV 183

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            ++D      + +  ++I+  + + I     G   + +  G+   +   L G+   + +G
Sbjct: 184 AKVDQWIPRDYISDVRQIASEIDQAIAGFIRGQGSLCLILGIYYAAGLSLVGLNFGLLIG 243

Query: 246 VITAIMAMIPGGAPIS----FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +   +++ IP    +        V+I        +    L ++ +   F+    L+P LV
Sbjct: 244 LFAGMISFIPYVGSLVGLVLAVGVAIVQFWPDYPWIGLVLAVFFSG-QFLEGNILQPKLV 302

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLG 327
           G  + L  +   F L       G +G
Sbjct: 303 GSSVGLHPVWLMFALFAFGALFGFVG 328


>gi|257873728|ref|ZP_05653381.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257807892|gb|EEV36714.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
          Length = 399

 Score = 86.4 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 55/341 (16%), Positives = 113/341 (33%), Gaps = 7/341 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+       L     P L  LI+ +   P+     +KK   S  +A I  + ++ +  
Sbjct: 35  ISFLFTPFSAILTAIIPPFLFGLILYYLFNPVVDKLETKKIPRSASIAGIYLLILLLIVF 94

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
                           + S   L +        +L + P     +++     +   ++  
Sbjct: 95  AGFQLYPILEQQTTDLINSLPSLVSDFEKNATAFLENTPFQDEMAQITDTLQNITSNIMS 154

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
               + +T          S          +++    I  FF  R+       + SL    
Sbjct: 155 FIGDYWQTGAAGL-----SSLFSTISTLFIALFTGPIIAFFLLRNPNKFYFSVLSLVPPR 209

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + +I +I    + +   G  I ++  G +    + L G+     L +   ++ +IP
Sbjct: 210 FRKDFNEIVKISDLQVGAFLKGQIISSLILGAIYWVVFLLIGLEYASILAIAAGLLCIIP 269

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G  I F                  L  W A++L   D  + P ++G  +K+  +    
Sbjct: 270 YIGPFIVFFPGLFIAAQDSTGMLVKFLIAWFAVQLLHGDLVV-PRVMGDRLKIHPITILV 328

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            L+     MG++G+  G  +  L+ V+        K+   +
Sbjct: 329 VLLVMGDLMGIVGVIFGIPIYCLLKVLVVYVFRKFKQRYNR 369


>gi|160871644|ref|ZP_02061776.1| membrane protein, PerM family [Rickettsiella grylli]
 gi|159120443|gb|EDP45781.1| membrane protein, PerM family [Rickettsiella grylli]
          Length = 358

 Score = 86.4 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 54/359 (15%), Positives = 131/359 (36%), Gaps = 14/359 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESS 59
           +   + +P+  + W+ +  I++    L    APV  +++I +   WPI+S  + K     
Sbjct: 9   LNRYIFDPELAILWLFLLFIIIVFASLGKILAPVFVSIVIAYLLQWPIHS--LEKLHLPR 66

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
               +   +S + L I+ ++ L      ++  L++++      G  +  +L     G  +
Sbjct: 67  IAAVLGVYISFVSLVIIGIVGLLPLLFRQLNNLIAELPAMVAKGQALLLYLPTRYPGYTS 126

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                + +   +S    S   L +  + +IP          + + +  + + + ++FF  
Sbjct: 127 VNQIQEWILQFKSQLTHSGQLLLSASLGYIP--------NVIAFAIYFVLVPLLVYFFLL 178

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D   I   L            +  + ++ +   +   G  +  +   ++   ++ + G+ 
Sbjct: 179 DEKKIIGWLSRYLPEKRRLISQVWTEVLTQT-GNYVRGKALEMLIVWIITYLSFAILGLQ 237

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTLR 297
             + L V+  +  +IP  GA +    V I   ++         L     + + +    L 
Sbjct: 238 YAILLSVLVGVSVIIPYIGAVMVTIPVLIIGFLEWGWTAHFAYLVAIYTLIITLDANVLV 297

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           P L    + L  +     ++     +G  G+F    L +++  I          NK  I
Sbjct: 298 PLLFSEAVNLHPVTIIIAVLVFGGLLGFWGVFFAIPLASVVNAILNVISCKKAGNKNNI 356


>gi|328912764|gb|AEB64360.1| putative permease [Bacillus amyloliquefaciens LL3]
          Length = 353

 Score = 86.4 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 114/318 (35%), Gaps = 15/318 (4%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
             +K  F P+  A+ I +   PI      K            T+S++ ++ +    + + 
Sbjct: 37  LVIKSLFIPIFIAVFIAYLLLPITEWLHGKGMPR--------TLSLLLIYFLFFGGIGWG 88

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
               +  L+ ++   ++    +    + +        L       P  +    +  ++  
Sbjct: 89  VYKGVPVLIEQLQDLSESIPGLAENYNSM-----LRHLHNHTDHWPDGMHHRMDKMIQQT 143

Query: 145 GIDFIPRFASRFGMI--FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                    S    I    DY L    +   +F+  +D  ++ + +  L    +     +
Sbjct: 144 ETFLAGTIESTIRSIRFVFDYILIAATIPFLVFYMVKDIDAMKKTVWYLTPKSWRKRGSE 203

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             R V   +     G  ++    GL+ G ++W+ G+P  + LG++  I  +IP   P   
Sbjct: 204 FLRDVDDSLGDYIRGQLLVCFLLGLIAGCSFWMFGLPYPLILGLVIGITNVIPYFGPFIG 263

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ L +  +      + +   I  FI    L P +VG  +++  +     L+ G   
Sbjct: 264 AVPALLLALALSAKAVIIVIITIFILQFIEGNILSPLIVGRSLRMHPVVIMLALLAGGEL 323

Query: 323 MGLLGLFIGPVLMALIAV 340
            G+ G+ +     A++ V
Sbjct: 324 AGIPGMILAVPAAAVLKV 341


>gi|116617770|ref|YP_818141.1| permease [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116096617|gb|ABJ61768.1| Predicted permease [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
          Length = 384

 Score = 86.4 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 47/325 (14%), Positives = 109/325 (33%), Gaps = 7/325 (2%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
           AP++ + ++ +   PI                 +  + ++ +  V +  +      ++ +
Sbjct: 55  APIMISGVLYYLLSPIVGLLEKYVHLPRNLSIGVVLIVLLAIIGVAIAAIVMVLRNQVIQ 114

Query: 92  LV-SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            + +           +    +          L   +    Q++   S+ +L +       
Sbjct: 115 FIDNWPNYWKTSEAFINETFASEQFKFIRDYLNHTNSDLNQNVLDWSKKYLTSGVAGI-- 172

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              S F  I     ++I+     L++   DG   S  + S   +      + +   + K 
Sbjct: 173 ---SSFASILTSIGVTIVSTPFILYYMLLDGHKFSSFVSSKFPNNSQLSVRYLLTEISKQ 229

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
           I     G   +A+   ++    Y + G+P  + L ++     +IP  G+ I+   V    
Sbjct: 230 IAQYIRGQLGVALAVMIMFSIGYTIIGLPYGILLALMAGFFNLIPYVGSIIAQVPVFTVA 289

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           LI G         +  AIE  I    + P ++G  + +  +     L+      G+LG+ 
Sbjct: 290 LIAGGPKMLILAIIVLAIEQPIEAHVISPKILGEALSIHPVTVIVVLLSSGHIFGVLGIV 349

Query: 330 IGPVLMALIAVIWKESIMAIKENKE 354
           +     A+  V         + N +
Sbjct: 350 LAVPSYAVAKVFVTHIYDWWRANSD 374


>gi|331269100|ref|YP_004395592.1| permease [Clostridium botulinum BKT015925]
 gi|329125650|gb|AEB75595.1| permease [Clostridium botulinum BKT015925]
          Length = 368

 Score = 86.4 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 49/337 (14%), Positives = 117/337 (34%), Gaps = 3/337 (0%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           I+  S   +     P   A  I +   PI   F  K +    F  +I  + ++    + +
Sbjct: 30  ILAGSFGVILAILTPFFWAFGIAYILNPIMVYFERKFKFKRNFSILIVFLLLIGFITLTV 89

Query: 79  LFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
             +    +  + +L + +     +        ++     +  +    +  +   S    +
Sbjct: 90  TIISPAIINNVDQLANNIPTYVRKTQTWFYETITR--FNLSNNTTLIQFANKSLSSITAT 147

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            T    + ++     A      FL      I  +  L        +I   L SL +    
Sbjct: 148 LTASLNSFLNVALTKAIDITSSFLKMIFGFIISVYILKDKEVFQKNIKDFLYSLFKKKSV 207

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
             +      V  +     +G +I ++  GL+      +   P  + + ++  +  MIP  
Sbjct: 208 DSFLIFGCEVNTIFSQYIIGKSIDSLIIGLLCAIGLGILKTPYVLLISLLVGVTNMIPYF 267

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P      ++ + +  +   A  +F++  +        L P ++G  + +        + 
Sbjct: 268 GPFIGMIPAVLITLFSSPIKALWVFIFILVLQQFDGWVLGPKILGDKVGVSPFWIILAIT 327

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            G  T G+LG+F+G  ++A+I  + ++ ++    NK 
Sbjct: 328 VGGGTFGVLGMFLGVPIIAVIKTLLQKFVLNRLNNKN 364


>gi|315657444|ref|ZP_07910326.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315491916|gb|EFU81525.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 487

 Score = 86.4 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 100/298 (33%), Gaps = 11/298 (3%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           P++     K     T  A+I+ +  + L +  +             L+ K        + 
Sbjct: 105 PMHLRL-QKWHIPKTLSAIISLLVGVGLVVAMIWIATSQLAHGAPALLVKAGGGFDKAL- 162

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
              WLSD P  +   ++          +   +  +  +     +   +S   ++      
Sbjct: 163 --AWLSDGPLKLDQEQIEKYIHELTAQITAFATKYSSSIASSALSVTSSVASVVTT---- 216

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
            I+  +  LFFF +DG  I   L  +          + +      +        ++A+ +
Sbjct: 217 -ILISLFCLFFFLKDGRQIWIWLIRMLPVPAREPVHEAAIRGWTTLNGYIRAQAVVALVD 275

Query: 226 GLVLGSAYWLAGVPSHVA-LGVITAIMAMIPGGAPISFTAVSI-YLLIKGNIFNATCLFL 283
            + +     + G  S    L ++  I A IP    ++  A+++  LL+      A  + +
Sbjct: 276 SVFISIGAAVLGAGSMTIPLALLIFIGAFIPIVGAVTTGAIAVLILLLDKGFMAAVIMLI 335

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                  I    L P L+   + L  L    G+  G    G++G  +   ++A    +
Sbjct: 336 VILAVQQIESNVLHPMLMSSAVNLHPLAVLLGVTAGTFLAGIIGALLVVPVIAFFNTV 393


>gi|42520946|ref|NP_966861.1| hypothetical protein WD1144 [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410687|gb|AAS14795.1| conserved hypothetical protein [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 354

 Score = 86.4 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 57/351 (16%), Positives = 128/351 (36%), Gaps = 13/351 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS-----T 60
           +  + I    I+  I+  L+ ++    P L ++II +   P+   F   +   S      
Sbjct: 1   MQKRHITICFILLFIIGMLFLMRPMIFPCLISIIIAYLFNPLVVKFEKYRIPRSCSVIFI 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            L ++    ++  F++P++++    +L    LVSKV       IP      ++       
Sbjct: 61  ILILLIAFILVITFVLPIIYVQITSILNF--LVSKVPSLKFKVIPSVLEFLNMKIEDSLF 118

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +  +K+L+   S  +        N +D    F  +      +    ++   +  F+  RD
Sbjct: 119 DHLSKNLAENYSNYVS----YFMNALDIASNFIIQVLSSSFNTVSLMVITPVVFFYILRD 174

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I ++   L    +          V  +I +   G   + I   +    +  + G+  
Sbjct: 175 WPLIIEKASKLIPIPYRGKIADYFSKVDFIISNYLKGQVNVCIVMMVFYSVSLSIIGLEH 234

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRP 298
            + +G+++ ++  IP   P+ +T +     I      F +  + L   +   I    L P
Sbjct: 235 SIVIGILSGMLTFIPYVGPLLYTIIGFLSAITQFSGWFESAAVLLLFGVGQLIDSNILVP 294

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            L+G  + +       G+       G  G+ +   ++A+  V  + +I   
Sbjct: 295 LLIGKKVHIHPTVIILGITICASYFGFTGILLFIPIIAMFNVSVEYAINKY 345


>gi|297537445|ref|YP_003673214.1| hypothetical protein M301_0250 [Methylotenera sp. 301]
 gi|297256792|gb|ADI28637.1| protein of unknown function UPF0118 [Methylotenera sp. 301]
          Length = 364

 Score = 86.4 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 56/330 (16%), Positives = 110/330 (33%), Gaps = 24/330 (7%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSF----ISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           Y L     P L A I+ +   P+        + K     T   V+    +  +  + LL 
Sbjct: 31  YLLLPILTPFLVAAILAYMCDPLVDRLCLVGVGKFRIGRTLATVLVMAGIFGIITLLLLI 90

Query: 81  LFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
           L      E   +  ++    N     V  WL          +           ++ +   
Sbjct: 91  LIPLLQKESLLIAERLPSTINNIRTTVEPWLQS--------KFGISFAIDGAQIQDIITK 142

Query: 140 FLKTNGIDF--IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
             KT G     +   A   GM  +    +I+ + + LF+  RD      ++  L    + 
Sbjct: 143 NWKTAGGLLGDVLMMAGNNGMALIGIIANILLLPVVLFYLLRDWDIFVARIGQLIPREWH 202

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                I+  + +V+     G   + +          W AG+   + +G++  ++  +P  
Sbjct: 203 DKTTNIASEIDQVLAEFLRGQLSVMLAMSAFYAIGLWFAGLDMALPIGLVAGLLGFVPYL 262

Query: 258 APISFTAVSIYLLIK-----GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
                  +++ +        G +     +F  G +   +    L P LVG  I L  +  
Sbjct: 263 GFALGVVLALVVAALEFTSFGQLIPVLIVFSLGQLVESM---VLTPKLVGDRIGLHPVVV 319

Query: 313 FFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            F L+ G +  G  G+ +  PV  A+   +
Sbjct: 320 IFALLAGGQLFGFAGVLLALPVSAAIAVGL 349


>gi|229047016|ref|ZP_04192640.1| hypothetical protein bcere0027_30240 [Bacillus cereus AH676]
 gi|228724307|gb|EEL75640.1| hypothetical protein bcere0027_30240 [Bacillus cereus AH676]
          Length = 376

 Score = 86.4 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 121/326 (37%), Gaps = 5/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + FLK  F PVL A ++ +   P + S + KK  S         + V+ LF+
Sbjct: 44  ISFVFTPFIVFLKTIFFPVLLAGLLFYILHP-FVSLLEKKGVSRIVSIASIYLIVLGLFV 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             ++ +      ++  L+  +           R      G         ++L+   +  +
Sbjct: 103 FLVVTVIPIIKDQIDALIDNLPYFGHEIEQAARRF----GESNLLGKIQENLNINVANMV 158

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   T  +  +    + F     +  L+ + +   LF+  +DG  +           
Sbjct: 159 KEYTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQ 218

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +I   +   I S   G  I+++  G++L   Y + G+   V L ++  I+ ++P
Sbjct: 219 RQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVP 278

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI     ++ +    +      + +   +      K + P ++G  + +  +   F 
Sbjct: 279 YVGPIIAITPALIIAFIDSPAMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFI 338

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++      G++G+ +     A++ V+
Sbjct: 339 ILTAGNLFGIMGIILAIPGYAILKVL 364


>gi|330863271|emb|CBX73396.1| putative permease perM [Yersinia enterocolitica W22703]
          Length = 338

 Score = 86.4 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 56/334 (16%), Positives = 118/334 (35%), Gaps = 18/334 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +PQ I   +I+      LYF  G  AP+L+A+++ +   WP     + +   S  
Sbjct: 10  RRRFTDPQVIALLVILLAGFCILYFFSGILAPLLAAIVLAYLLEWPTAR--LQRIGCSRP 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           + A I  V    + ++ +  +      +   L+S           +P+ L+         
Sbjct: 68  WAASIVLVVFGGIALLAVFVVAPTVWQQGNNLLS----------DMPKMLNKFNAFAQTL 117

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGI--DFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                 L     + +++E          + + +F+    +  L   + +I + + LFF  
Sbjct: 118 PARYPALVDAGIVDMMAENLRSKLSGMGESVVKFSLASLIGLLTLAIYLILVPLMLFFLL 177

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D   +   +  +         +     + + I +   G  +  +  G+     +++ G+
Sbjct: 178 KDKEQMLNAVRRILPRNRGLAGQVWLE-MNQQITNYIRGKVLEMVVVGVATYLVFFVLGM 236

Query: 239 PSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTL 296
              + L V+     +IP  GA I    V +  L +  I      LF+   +   +    L
Sbjct: 237 NYALLLAVLVGFSVLIPYIGAVIVTIPVVLVALFQWGIGADFWTLFVAYLVVQGLDGNLL 296

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            P L    + L  L     ++      G LG  +
Sbjct: 297 VPVLFSEAVNLHPLVIILSVIIFGGMWGFLGRVL 330


>gi|282859354|ref|ZP_06268462.1| conserved domain protein [Prevotella bivia JCVIHMP010]
 gi|282587839|gb|EFB93036.1| conserved domain protein [Prevotella bivia JCVIHMP010]
          Length = 358

 Score = 86.4 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 62/363 (17%), Positives = 133/363 (36%), Gaps = 16/363 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEE 57
           M + +   + +   +I  II    + LKG      P   A ++ +   PI      K   
Sbjct: 1   MIQPITLDKFLRWTVIALIITAVFFVLKGLSSVLLPFFVAWLLAYLLHPIVKFIQFKMHV 60

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYY-GMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
            S  +++I T  +  L I  ++ +     + ++ +L        Q           I   
Sbjct: 61  KSRAVSIIITFILAILIITGVVMVIVPPFIDQVAKLGDLANRYVQDNTHSSSIAGMIKKW 120

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
           +  +        + +      +T +     DF+ + AS    I   +       ++ +FF
Sbjct: 121 INDNHAQIDKFLNSRDFADTIKTAMPK-LFDFVGQTASVVMSIIASF-----ITLLYMFF 174

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
              D   + + L  +       +W  ++  V + + S   G  ++A+  G++    + + 
Sbjct: 175 ILLDYDDLLKSLVKMIPKSQRPFWCGLASDVERALNSYIRGQGLVALTMGILFCIGFTII 234

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGA------IELF 290
             P  + LG++  I+ ++P    I+    ++  L+K     +    ++GA      I   
Sbjct: 235 DFPMAIGLGILIGILDLVPYLHSIALIPTALLALMKAANTGSNFWMIFGAAVLVFIIVQI 294

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           I+D  + P ++G  + L        L      +G +GL I   L  +I   WK  +   +
Sbjct: 295 IIDMVVTPKVMGKAMGLNPAVLLLSLSIWGALLGFIGLIIALPLTTIIIAYWKRYVTKEQ 354

Query: 351 ENK 353
           E +
Sbjct: 355 EEQ 357


>gi|75676666|ref|YP_319087.1| hypothetical protein Nwi_2482 [Nitrobacter winogradskyi Nb-255]
 gi|74421536|gb|ABA05735.1| Protein of unknown function UPF0118 [Nitrobacter winogradskyi
           Nb-255]
          Length = 662

 Score = 86.0 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 51/359 (14%), Positives = 108/359 (30%), Gaps = 27/359 (7%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + +   +I  +++  LY  +  F P++ A+++ F   P+              + V+  
Sbjct: 8   DRALASAVIAALVICGLYVGREIFVPIVLAVLLSFVLAPLVDILERWHFPRFASVPVVVL 67

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++ + +F      L    + E++ L   +    Q      + L  +              
Sbjct: 68  LAFIAIF-----ALGGLIVREVRGLADSLPSYQQTMQQKIQSLRALTATGPLDRAAEILQ 122

Query: 128 SHPQSLKILSETFLKTNGI--------------------DFIPRFASRFGMIFLDYCLSI 167
           +  + +                                        S      L    +I
Sbjct: 123 NLGKEISGPQSPPPPAEISPSSRTAEPVKPIPVEVRTPPQSALENISALISPLLHPLATI 182

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
             +++ + F       +  +   L                   +    L   ++  G G+
Sbjct: 183 GIVVVFVIFILFQREDLRNRFIKLAGSNDLQSATAAIDDAAGRLSRLLLMQVLLNTGFGV 242

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
           ++ S   L GVPS +  G++ AIM  +P   P       + L +  +   +  L+    I
Sbjct: 243 IVASGLLLIGVPSAILWGILAAIMRFVPYVGPFIAAFFPLTLAVAVDPGWSMLLWSGALI 302

Query: 288 ELF--IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            L   IV +   P LVG    L  +             G +GL +   L   + V+ + 
Sbjct: 303 LLTELIVGQVFDPLLVGHSSGLSPVAVVVSATFWTALWGPIGLVLATPLTICLVVLGRH 361


>gi|315586748|gb|ADU41129.1| membrane protein [Helicobacter pylori 35A]
          Length = 348

 Score = 86.0 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 135/363 (37%), Gaps = 25/363 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  Q     + +      +Y  + F    L A ++    + +      +        + +
Sbjct: 1   MKAQYFFWILFLIGFYWMIYLYQDFLMDALIAGLLCVGFFQVKVFLDKRFLN--LISSFL 58

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +  + IVPL F+ Y     + E+        +    + +WL         +E  + 
Sbjct: 59  CVLVLASVLIVPLYFIIYKSSNIIFEI------NFEKFSALIKWLKG-----TITENLSH 107

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +         E F   +   ++ + +S  G   L      +F++  LFFF+  G    
Sbjct: 108 FPTIHDGASKFLENFSAASITGYLLKISSYVGKYSLKLITDALFILGLLFFFFYYGERFY 167

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +   L     KKI   V  ++R   L   I  I EG+  G+     G      LG
Sbjct: 168 RYFLGVLP-LGMNQSKKIFEEVAGILRIVLLTSLITVILEGVAFGAMIVWFGHDGWS-LG 225

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLV-- 301
           ++  + +++P  G  + +  ++IY L  GN+     + L+  + +  ++D  ++P L+  
Sbjct: 226 ILYGLASLVPAVGGALIWIPIAIYELYHGNVNETIFIALYSILLISVLIDSVIKPILIVF 285

Query: 302 ------GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                    +K+  +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 286 IKKRIFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345

Query: 356 ISS 358
              
Sbjct: 346 ACE 348


>gi|172058669|ref|YP_001815129.1| hypothetical protein Exig_2664 [Exiguobacterium sibiricum 255-15]
 gi|171991190|gb|ACB62112.1| protein of unknown function UPF0118 [Exiguobacterium sibiricum
           255-15]
          Length = 385

 Score = 86.0 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 55/314 (17%), Positives = 111/314 (35%), Gaps = 8/314 (2%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P+  A I+ +   PI      K +      AVI  +  +   +  L F+F   + +  
Sbjct: 44  VPPLAIAGILYYVLLPIVELLEKKMKRRP---AVILVLLGLVSILTALGFIFGPMLSD-- 98

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           ++   V           R L D+   +  S  +++ LS    L       +      F+ 
Sbjct: 99  QITEFVNSIPTLASQFQRQLIDVRDQLENSAFFSRFLSGQDDLFNKFSGNVSEYASTFLK 158

Query: 151 RFASRFGMIFLDYCLSIIFMI---IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
              +  G        +++ ++   I L +   DG  +   L  +    +    KKI   V
Sbjct: 159 NIGTGVGGFVSVITTTVVTIVIIPIMLIYMLLDGDKLKGNLVKMMPFEYHKETKKILHDV 218

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
              I S   G  I++IG G++    Y + G+   + L +   +  +IP   P+     ++
Sbjct: 219 HLTIMSYIRGQVIVSIGVGIIAYIGYLIIGIDYALLLALFATLTNIIPFLGPVIGVVPAL 278

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            +    +   A    +   +   I    + P + G  + +  L     L+      G  G
Sbjct: 279 IVGFIQDPILAVYAVIVMTVAQQIDSHIMSPLVQGKTLDVHPLTIIIVLLVAGNIAGFFG 338

Query: 328 LFIGPVLMALIAVI 341
           + +G    A++ V+
Sbjct: 339 VLLGVPFYAVMKVV 352


>gi|256838716|ref|ZP_05544226.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256739635|gb|EEU52959.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 415

 Score = 86.0 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 64/360 (17%), Positives = 133/360 (36%), Gaps = 23/360 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   +++  I+  +  L+    P L A ++ +   P    F  K    S  L+++A +
Sbjct: 46  RIVFGILVISGIIYLIALLRNALLPFLIAWLLAYMMQPFVKFFQYKLCFKSRILSIMAVL 105

Query: 69  SVMCLFIVPLLFLFY-YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             + L I  L+ +       E  + +  +   +     VP               W ++L
Sbjct: 106 VTLGLLITLLVVMVIPSIAAEADKTLELIRTHDPGEGHVP----------LIPHSWMEYL 155

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD-----YCLSIIFMIIALF-FFYRDG 181
               +   + E   K N +  + + A +   I  +     + ++I+F+I+  F F   D 
Sbjct: 156 ESNVNFAQIMELLSKENLLKAVKQIAPQLWSILSNTFSILFSITIVFVILLYFIFILLDY 215

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I+     L    +  + + ++  V   +   F G ++IA+  G++L   + +   P  
Sbjct: 216 EKIANGWIDLIPERYRPFLQGLAEDVEYSMNRYFRGQSLIALSVGVLLAIGFKIINFPLA 275

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGA------IELFIVDKT 295
           V LG+   ++ +IP    I    + +  L++          ++G       I   I D  
Sbjct: 276 VTLGLFIGVLNLIPYMQAIGIIPMILLSLLRSAETGENFWLIFGMAILVLGIVQCIQDLY 335

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L P ++G  + L        L      +G +GL I   L  L    +K  I+      + 
Sbjct: 336 LTPRIMGKAMGLNPAIILLSLSIWGTILGFIGLIIALPLTTLCLSYYKRFILHEYNELDS 395


>gi|324991328|gb|EGC23261.1| permease [Streptococcus sanguinis SK353]
 gi|324993686|gb|EGC25605.1| permease [Streptococcus sanguinis SK405]
 gi|324995001|gb|EGC26914.1| permease [Streptococcus sanguinis SK678]
 gi|325696326|gb|EGD38217.1| permease [Streptococcus sanguinis SK160]
          Length = 374

 Score = 86.0 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 45/334 (13%), Positives = 108/334 (32%), Gaps = 6/334 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +     P L    + + + P+      K + +     +I    +  L  + +++L    
Sbjct: 37  VVNTILIPFLVGGFLYYITNPLVKFLQEKLKINRMIGILITLSLLFGLIALGVIYLLPIL 96

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  L++               LS  P           ++        LS   +  N 
Sbjct: 97  INQLSSLINSTQGLYWEIQSFVNQLSKNPL------FRNLNIQSTIQQLNLSYVDILQNI 150

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           ++ +           ++  + +I   I L +F  DG  +   L+             +  
Sbjct: 151 LNSVTNSLGSVLSAVVNTLMILIMTPIFLVYFLMDGHKLLPMLERTVLKRDKLNISSLLT 210

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   +     G++I A+  G +    Y + G+   +   + +++  +IP   P      
Sbjct: 211 NLNATVARYISGISIDALIIGALAYIGYSVIGLKYALVFAIFSSLANLIPYVGPSIGLIP 270

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            +      +        ++  I   +    L P +VGG +K+  +     L+      G+
Sbjct: 271 MVITYAFTDPQKMVAALIYMLIIQQVDGNILYPRIVGGVMKVHPITIMVLLLLSSNIYGV 330

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           LG+ +     +++  I K        +KE     
Sbjct: 331 LGMIVAIPTYSILKEIAKFLANLYDNHKEAQQQK 364


>gi|313113534|ref|ZP_07799123.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310624261|gb|EFQ07627.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 425

 Score = 86.0 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 53/346 (15%), Positives = 120/346 (34%), Gaps = 17/346 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPI-------YSSFI-SKKEESSTFLAVIATVSVMCLFIVPL 78
           L G   P +   +I +   P+          FI  K       L++  T+    L I  L
Sbjct: 49  LTGILMPFIYGAVIAYLLKPVCNTIESFLRRFIPEKMHGLVNVLSITLTILFGLLLIYAL 108

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
             +    +  +  + +    A ++     +W + +       ++     S   ++    +
Sbjct: 109 CMMIIPQL--ITSVTTLYYTAQRNLAKFVQWANHVEFIENNQQIMDMLNSAYATISTNID 166

Query: 139 TFLKTN---GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
             +KT     +  I   A+   +  +    ++I  II   +         QQ   +   +
Sbjct: 167 DLIKTRLLPSMQNIVSGAAAGVLNVVTMAKNLIIGIIVAVYMLASRKRFVQQAKLVLYSI 226

Query: 196 FPAYWKKISRI----VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
           F   W ++ +       K+      G  + +   G++      +   PS + + VI  + 
Sbjct: 227 FKPRWAELIKEEVKYADKMFGGFINGKIMDSAIIGVLCYIGCLIFKFPSALLVSVIIGVT 286

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP   P      +  L++  N   A    L+  +   +    + P ++G    L    
Sbjct: 287 NVIPFFGPFIGAVPATLLILIQNPIKALWFVLFVLVLQQLDGNVIGPKILGNTTGLSSFW 346

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
             F ++      G +G+ +G  L A+I  + K+ ++   +  ++I 
Sbjct: 347 VLFAILLFGGLWGFVGMIVGVPLFAVIYDVIKKLVVHGLKRNKEID 392


>gi|146283164|ref|YP_001173317.1| transporter, putative [Pseudomonas stutzeri A1501]
 gi|145571369|gb|ABP80475.1| transporter, putative [Pseudomonas stutzeri A1501]
          Length = 365

 Score = 86.0 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 119/334 (35%), Gaps = 14/334 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +    +Y L     P L  +++ +   P+           +          V+ +F +
Sbjct: 15  LLLCTWLVYLLTPILTPFLIGVLLAYLGDPLVDRLERWGLSRTW--------GVIAVFAL 66

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL-WTKHLSHPQSLKI 135
             L L    ++ +  L  ++V   Q       WL  +      ++     +      LK 
Sbjct: 67  FSLLLLVLLLVLVPMLGKQMVKLYQLAPLALDWLQHVALPWVQTQFGLEDNFWQLDRLKA 126

Query: 136 LSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                L +    +  I   A+   +  L +  +++ + +  F+  RD   I  +L SL  
Sbjct: 127 AFTAHLGSTTDVLGMILSSATASSLALLAWIGNLLLIPVVSFYLLRDWDLIMLKLRSLLP 186

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   ++     +VI +   G  ++ +   ++  S   L G+   + +GV+  + ++
Sbjct: 187 RKREGMVVRLMSECHEVIGAFLRGQLLVMLALAIIYASGLMLVGLELGLLIGVLAGLASI 246

Query: 254 IPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +P    +     ++   +       +    + +   +   +    L P LVG  I L  +
Sbjct: 247 VPYMGFVVGIGAAVIAALFQFGLAPYPLIGVAVVFTVGQMLEGMLLTPLLVGDRIGLHPV 306

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              F ++ G +  G  G+ +   + A+I V+ + 
Sbjct: 307 AVIFAVLAGGQLFGFTGVLLALPVAAVIMVLLRH 340


>gi|198282862|ref|YP_002219183.1| hypothetical protein Lferr_0725 [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218665195|ref|YP_002425063.1| hypothetical protein AFE_0571 [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198247383|gb|ACH82976.1| protein of unknown function UPF0118 [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218517408|gb|ACK77994.1| membrane protein, putative [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 347

 Score = 86.0 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/347 (12%), Positives = 124/347 (35%), Gaps = 10/347 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q      I+ ++    Y L    +P L A I+ +   P+ +     +   +    ++  +
Sbjct: 2   QRFFVLAILILLGWLAYRLSPILSPFLIAGILAYLGNPLVTRLQRYRINRTWGTTLVFVL 61

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L  + +  L          +  + +L  ++       L        ++ +     S
Sbjct: 62  VILVLAGITMALL--------PVIRHQSLLFVEYLRQYLELLQTRIIPQLSARIGIPLDS 113

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +    +        +    + A   G   +   LSII + +  F+  RD   +  ++
Sbjct: 114 QSLTHYATANAQKLAGWLGRSLQMALSSGPSLISSVLSIILVPVLGFYLLRDWPRLIARI 173

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +L    +    ++++     ++ +   G  ++ +  G        + G+ + + +G++ 
Sbjct: 174 AALIPPHYLPLSRRLAGDADAMLMAFLRGQLLVMLALGASYAIGLSIVGLKTAILVGLVA 233

Query: 249 AIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            +++ +P    +S  A++   +    G       + +   I   +      P+LVG  I 
Sbjct: 234 GLLSFVPYLGVVSGIAMATLAMYVQTGAFLPILGVLIVFGIGQILESMVFTPYLVGDRIG 293

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L  +   F ++ G    G  GL +   + A++  + +       +++
Sbjct: 294 LHPVAVIFAVLAGGELFGFSGLLLALPVTAVLIALLRHLHGWYVQSR 340


>gi|315654644|ref|ZP_07907550.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
 gi|315491108|gb|EFU80727.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
          Length = 487

 Score = 86.0 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 100/298 (33%), Gaps = 11/298 (3%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           P++     K     T  A+I+ +  + L +  +             L+ K        + 
Sbjct: 105 PMHFRL-QKWHIPKTLSAIISLLVGVGLVVAMIWIATSQLAHGAPALLVKAGGGFDKAL- 162

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
              WLSD P  +   ++          +   +  +  +     +   +S   ++      
Sbjct: 163 --AWLSDGPLKLDQEQIEKYIHELTAQITAFATKYSSSIASSALSVTSSVASVVTT---- 216

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
            I+  +  LFFF +DG  I   L  +          + +      +        ++A+ +
Sbjct: 217 -ILISLFCLFFFLKDGRQIWIWLIRMLPVPAREPVHEAAIRGWTTLNGYIRAQAVVALVD 275

Query: 226 GLVLGSAYWLAGVPSHVA-LGVITAIMAMIPGGAPISFTAVSI-YLLIKGNIFNATCLFL 283
            + +     + G  S    L ++  I A IP    ++  A+++  LL+      A  + +
Sbjct: 276 SVFISIGAAVLGAGSMTIPLALLIFIGAFIPIVGAVTTGAIAVLILLLDKGFMAAVIMLI 335

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                  I    L P L+   + L  L    G+  G    G++G  +   ++A    +
Sbjct: 336 VILAVQQIESNVLHPMLMSSAVNLHPLAVLLGVTAGTFLAGIIGALLVVPVIAFFNTV 393


>gi|269216089|ref|ZP_06159943.1| conserved hypothetical protein [Slackia exigua ATCC 700122]
 gi|269130348|gb|EEZ61426.1| conserved hypothetical protein [Slackia exigua ATCC 700122]
          Length = 488

 Score = 86.0 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 58/346 (16%), Positives = 115/346 (33%), Gaps = 25/346 (7%)

Query: 14  WMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV------ 64
             I+ II  + Y    L    A V+ A I         + F +         A+      
Sbjct: 25  IGIVLIIAAAGYVSGVLSTPIAIVVWAAIFVLILRKPVAFFEAHGIPRVLGTALSYLLFA 84

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +    +  +   P   L       +  + S V  A +         +DI      SE   
Sbjct: 85  LVLGLLGIVMFSPAFGLGDQLSSLIASVPSYVQEATRMWNDFSARYADIMQNTRVSEW-- 142

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
              S   SL   +  F  ++    +      FG    +  + I F ++  F+   +  ++
Sbjct: 143 -VDSMSSSLISWANDFAASSATGIV-----EFGAGLANSLMIIGFALVVAFWLLMELPAL 196

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           S+++  L        +  + R   ++I    L    +    G+  G  Y +AGVP+   L
Sbjct: 197 SREMARLVPESRREGFDMLRRTTTRIIDGYLLATLAVCTIVGIACGILYIVAGVPNAGIL 256

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            +I  +  +IP         + + +    N   A  +F+   +    V   ++P L+   
Sbjct: 257 AIIVGVFNVIPVIGHWIGLILVVVIAAFTNPVLALVVFIGTIVIQEAVYTFVQPKLMANS 316

Query: 305 IKLPFLPTFFGLVGGVRT-------MG-LLGLFIGPVLMALIAVIW 342
           + +  +     L  G           G ++G+ I   + AL   ++
Sbjct: 317 VDVHPVLVILALFIGSAAGSAVQGLFGSVVGMLISIPVAALAKALF 362


>gi|327470450|gb|EGF15906.1| permease [Streptococcus sanguinis SK330]
          Length = 374

 Score = 86.0 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/334 (13%), Positives = 108/334 (32%), Gaps = 6/334 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +     P L    + + + P+      K + +     +I    +  L  + +++L    
Sbjct: 37  VVNTILIPFLVGGFLYYITNPLVKFLQDKLKINRMIGILITLSLLFGLIALGVIYLLPIL 96

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  L++               LS  P           ++        LS   +  N 
Sbjct: 97  INQLSSLINSTQGLYWEIQSFVNQLSKNPL------FRNLNIQSTIQQLNLSYVDILQNI 150

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           ++ +           ++  + +I   I L +F  DG  +   L+             +  
Sbjct: 151 LNSVTNSLGSVLSAVVNTLMILIMTPIFLVYFLMDGHKLLPMLERTVLKRDKLNISSLLT 210

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   +     G++I A+  G +    Y + G+   +   + +++  +IP   P      
Sbjct: 211 NLNATVARYISGISIDALIIGALAYIGYSVIGLKYALVFAIFSSLANLIPYVGPSIGLIP 270

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            +      +        ++  I   +    L P +VGG +K+  +     L+      G+
Sbjct: 271 MVITYAFTDPQKMVAALIYMLIIQQVDGNILYPRIVGGVMKVHPITIMVLLLLSSNIYGV 330

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           LG+ +     +++  I K        +KE     
Sbjct: 331 LGMIVAIPTYSILKEIAKFLANLYDNHKEAQQQK 364


>gi|302392357|ref|YP_003828177.1| sporulation integral membrane protein YtvI [Acetohalobium
           arabaticum DSM 5501]
 gi|302204434|gb|ADL13112.1| sporulation integral membrane protein YtvI [Acetohalobium
           arabaticum DSM 5501]
          Length = 352

 Score = 86.0 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 57/338 (16%), Positives = 127/338 (37%), Gaps = 6/338 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I  + L+   +L  +F P + A +I     PI     +K   +      I    ++ + I
Sbjct: 14  IALLSLIFFEYLLIYFLPFIIAFLIASLIEPIVELLQTKLRLNRGLAVTICLGIILIIII 73

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + +        +E+ +L + +      G    +W+      +    L  +     + +  
Sbjct: 74  LLITIFLSRLFVELTKLANNIPEFKTLGARA-QWVVKQNQNLSRLLLELELPETVKEVIT 132

Query: 136 LSETFLKTNGIDFIPRFASRFG---MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
            +   L       I R  + F         +   ++  +I+ FF  RD   I+Q +    
Sbjct: 133 QNLEHLYQQLRSMIQRGITTFLELLRGLPKFITILLVSLISTFFISRDKELINQTILRAF 192

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
              +     K+   +            I+     +++ +   L G    ++LG++  ++ 
Sbjct: 193 PRPWHKNINKLESEIMSAAIGFIRAELILISITTVLMITGLLLLGSDYAISLGLVAGLLD 252

Query: 253 MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           +IP  G  +     + Y +I G+I     L     I + ++ + +   ++G  I +  L 
Sbjct: 253 LIPVIGPSLVILPWAGYSMIIGDISFGVSLLAV-LITVAVIRQLVEAKVIGENIGIHPLA 311

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           T   +  GV+ +G+ G FIGP ++ L+  I +    ++
Sbjct: 312 TLISMYLGVQILGIGGFFIGPAILILLRAIIRAGFASV 349


>gi|259501038|ref|ZP_05743940.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
 gi|302190513|ref|ZP_07266767.1| permease [Lactobacillus iners AB-1]
 gi|329920543|ref|ZP_08277275.1| putative membrane protein [Lactobacillus iners SPIN 1401G]
 gi|259167732|gb|EEW52227.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
 gi|328936219|gb|EGG32672.1| putative membrane protein [Lactobacillus iners SPIN 1401G]
          Length = 380

 Score = 86.0 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 61/337 (18%), Positives = 120/337 (35%), Gaps = 4/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F++   L F+      V+ A +  +   PI      K         +   + V+ + I
Sbjct: 43  IAFLLTPVLTFVNAIMPAVILAGVQYYLMNPIVDCLEQKYRIPRIVTILALFMVVLIILI 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + +  L      + K L+         G    R L   P            +S+ QS+  
Sbjct: 103 LIVNTLLPVIEAQTKSLIDHWPSYWDSGQEALRHLLHDPRLDGIRSDLNDAVSNAQSILF 162

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +         +           +     ++++     LFF  +DG  I+  L S     
Sbjct: 163 NT----GKASFNLFLENLFGAVNVISMLIVTLLTAPFILFFMLKDGKKINPYLTSFMPPR 218

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
               + K+   +   + S   G  I+A   G++    Y   G+   + L ++ A + +IP
Sbjct: 219 LQNVFSKLLHDINIAVSSYVRGQLIVAFWVGVMFAVGYTTIGLKYGLTLAILAACLNLIP 278

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
               +     +I + I  +      +F+   IE  I  + + P ++G  +K+  + T   
Sbjct: 279 YFGTLISLIPAIIIGILDSPVMLLKIFVVFFIEQLIEGRFISPLVMGSKMKMNPVTTILL 338

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+G     GLLG+     + A I +I  +     ++N
Sbjct: 339 LIGANSVAGLLGVIFAIPIYAGIKIIVVQVFDYYRKN 375


>gi|296876016|ref|ZP_06900074.1| membrane protein [Streptococcus parasanguinis ATCC 15912]
 gi|296433007|gb|EFH18796.1| membrane protein [Streptococcus parasanguinis ATCC 15912]
          Length = 375

 Score = 86.0 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 47/334 (14%), Positives = 110/334 (32%), Gaps = 6/334 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L     P L A  + + + P+        +    F  +I  V +  +  + + +L    
Sbjct: 37  VLNTILLPFLIAGFLYYITNPVVELLEKHLKIKRVFGILITLVLLFGIIGLGIFYLLPIL 96

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  L++           + R LS  P           ++        LS   +  N 
Sbjct: 97  INQLTSLINSTQGLYWEVQSLVRKLSTNPL------FQNINIQSTIQQLNLSYMDILQNL 150

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           ++ +           ++    +I   I L +F  DG  +   L+         +   +  
Sbjct: 151 LNSVTNSLGSVVNTIVNTVFILIMTPIFLVYFLVDGKKLLPMLERTILRNDKLHISSLLV 210

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + + +     G++I A+  G +    Y   G+   +   + + +  +IP   P      
Sbjct: 211 SLNETVSRYISGISIDALIIGTLAYIGYSFIGLKYALVFAIFSGLANLIPYVGPTIGLIP 270

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            I      ++       ++  I   I    L P +VGG +K+  +     L+      G+
Sbjct: 271 MIITYAFTDMDMMIKAVIYMLIIQQIDGNILYPRIVGGVMKVHPITIMVLLLLSSNIYGI 330

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +G+ +   + ++   I K  +     ++      
Sbjct: 331 IGMVVAIPVYSIGKEIVKFLVNLYDNHRAAQEQK 364


>gi|306838770|ref|ZP_07471604.1| permease [Brucella sp. NF 2653]
 gi|306843673|ref|ZP_07476273.1| permease [Brucella sp. BO1]
 gi|306275983|gb|EFM57692.1| permease [Brucella sp. BO1]
 gi|306406172|gb|EFM62417.1| permease [Brucella sp. NF 2653]
          Length = 413

 Score = 86.0 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 47/326 (14%), Positives = 111/326 (34%), Gaps = 20/326 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G M + ++F+++ S   L     P ++ + + +   P+      K   S    +++  + 
Sbjct: 51  GAMAFFVLFLVVFSSVLL-----PFVAGMALAYFLDPVADRLE-KVGLSRLAASIVILLI 104

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + + I+ L+ +      ++ + +S +         +             SE   K++  
Sbjct: 105 FLMILIIGLMIVVPILATQLADFISNLPGYITQLQSLLA--------NRDSEWLKKYIGI 156

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
             ++   + + L   G  F+          G   +D     +   +  F+   D   +  
Sbjct: 157 DSTVIQQNLSSLLQQGAGFLSTLLQSLWNSGKSLIDIAGLFVVTPVVAFYMLLDWDRMVN 216

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +DS          ++I+R +   +     G   + +  G        L G+   + +G 
Sbjct: 217 SIDSWVPRKQLHTVRRIAREMNAAVAGFIRGQGTLCLILGTYYAIGLTLTGLNFGLLIGF 276

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
              +++ IP        A++I + +     +      +     +  FI    L+P LVG 
Sbjct: 277 FAGLISFIPYIGSFVGLALAIGVALVQFWPDWIMVCTVAAVFFLGQFIEGNILQPKLVGS 336

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLF 329
            + L  +   F L       G  G+ 
Sbjct: 337 SVGLHPVWLMFALFAFGSLFGFTGML 362


>gi|294674535|ref|YP_003575151.1| hypothetical protein PRU_1867 [Prevotella ruminicola 23]
 gi|294472780|gb|ADE82169.1| putative membrane protein [Prevotella ruminicola 23]
          Length = 366

 Score = 86.0 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 117/335 (34%), Gaps = 15/335 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L     P   A ++ +  +P       K    +  L+++ T+ ++   +  +++L     
Sbjct: 31  LSSVLLPFFVAWLLAYLLYPAVKFVQYKLHVGNRALSIVITLVLLIAVMAGVIYLI---- 86

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
             +  ++ +            R  + I     A +LW    S        S TF  +   
Sbjct: 87  --IPPMIEQFEKLGSLATDYIRKEAHIKDIPGAIQLWINQNSREIEKFFKSATFTDSVKT 144

Query: 147 DF--IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               +     +   + +    S+I ++  +FF   D   ++     +       +W+ + 
Sbjct: 145 VLPGLFNVLGQTATVVIGIVASLITLLY-MFFILLDYEYLTDNWIRIFPKKSRPFWQGLG 203

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
           +   + + +   G   +A+  G++    + +   P  + LG++  IM ++P     +   
Sbjct: 204 KDAGQALNNYVRGQGTVALIMGILFCIGFTIIDFPMAIGLGIMIGIMDLVPYLHTFALIP 263

Query: 265 VSIYLLI----KGNIFNAT--CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
             +  L+     G  F        L   +   I D  + P ++G  + L        L  
Sbjct: 264 TVLLALLKSADTGQNFWGILALALLVFIVVQLICDMIVTPKVMGKAMGLNPAILLLSLSV 323

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               +G +GL I   L  L+   +++ +    EN+
Sbjct: 324 WGALLGFIGLIIALPLTTLLIAYYEQYVTKDTENE 358


>gi|306842023|ref|ZP_07474696.1| permease [Brucella sp. BO2]
 gi|306287864|gb|EFM59284.1| permease [Brucella sp. BO2]
          Length = 413

 Score = 86.0 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 47/326 (14%), Positives = 111/326 (34%), Gaps = 20/326 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G M + ++F+++ S   L     P ++ + + +   P+      K   S    +++  + 
Sbjct: 51  GAMAFFVLFLVVFSSVLL-----PFVAGMALAYFLDPVADRLE-KVGLSRLAASIVILLI 104

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + + I+ L+ +      ++ + +S +         +             SE   K++  
Sbjct: 105 FLMILIIGLMIVVPILATQLADFISNLPGYITQLQSLLA--------NRDSEWLKKYIGI 156

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
             ++   + + L   G  F+          G   +D     +   +  F+   D   +  
Sbjct: 157 DSTVIQQNLSSLLQQGAGFLSTLLQSLWNSGKSLIDIAGLFVVTPVVAFYMLLDWDRMVN 216

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +DS          ++I+R +   +     G   + +  G        L G+   + +G 
Sbjct: 217 SIDSWVPRKQLHTVRRIAREMNAAVAGFIRGQGTLCLILGTYYAIGLTLTGLNFGLLIGF 276

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
              +++ IP        A++I + +     +      +     +  FI    L+P LVG 
Sbjct: 277 FAGLISFIPYIGSFVGLALAIGVALVQFWPDWIMVCTVAAVFFLGQFIEGNILQPKLVGS 336

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLF 329
            + L  +   F L       G  G+ 
Sbjct: 337 SVGLHPVWLMFALFAFGSLFGFTGML 362


>gi|257877479|ref|ZP_05657132.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
 gi|257811645|gb|EEV40465.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
          Length = 399

 Score = 86.0 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 55/341 (16%), Positives = 113/341 (33%), Gaps = 7/341 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+       L     P L  LI+ +   P+     +KK   S  +A I  + ++ +  
Sbjct: 35  ISFLFTPFSAILTAIIPPFLFGLILYYLFNPVVDKLETKKIPRSASIAGIYLLILLLIVF 94

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
                           + S   L +        +L + P     +++     +   ++  
Sbjct: 95  AGFQLYPILEQQTTDLINSLPSLVSDFEKNATAFLENTPFQDEMAQITDTLQNITSNIMS 154

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
               + +T          S          +++    I  FF  R+       + SL    
Sbjct: 155 FIGDYWQTGAAGL-----SSLFSTISTLFIALFTGPIIAFFLLRNPNKFYFSVLSLVPPR 209

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + +I +I    + +   G  I ++  G +    + L G+     L +   ++ +IP
Sbjct: 210 FRKDFNEIVKISDLQVGAFLKGQIISSLILGAIYWVVFLLIGLEYASILAIAAGLLCIIP 269

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G  I F                  L  W A++L   D  + P ++G  +K+  +    
Sbjct: 270 YIGPFIVFFPGLFIAAQDSTGMLVKFLIAWFAVQLLHGDLVV-PRVMGDRLKIHPITILV 328

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            L+     MG++G+  G  +  L+ V+        K+   +
Sbjct: 329 VLLVMGDLMGIVGVIFGIPIYCLLKVLVVYVFRKFKQRYNR 369


>gi|240143512|ref|ZP_04742113.1| membrane protein [Roseburia intestinalis L1-82]
 gi|257204547|gb|EEV02832.1| membrane protein [Roseburia intestinalis L1-82]
          Length = 442

 Score = 86.0 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 49/330 (14%), Positives = 115/330 (34%), Gaps = 21/330 (6%)

Query: 31  FAPVLSALIIGFTSWPIYS------------SFISKKEESSTFLAVIATVSVMCLFIVPL 78
             P++  ++I +   PI                 SK++   T   +  T S++ L  + +
Sbjct: 71  LQPIIIGVVIAYLLNPIMKFLEGHLLKFLEPRMKSKRKAKKTSRGIAITGSLVFLVGICV 130

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           L +          + S +    Q    + +W+ ++  G   +EL +        +    E
Sbjct: 131 LLVAAIVPSISASIQSMITSFPQEAKDLTKWVDEVTNGD--TELASMIQQGVDKITDTVE 188

Query: 139 TFLKTNGIDFIPRFASRFGMIF---LDYCLSIIFMIIALFFFYRDGFSISQQ----LDSL 191
           TF + +    +  + +         + + L++I  +I   +   D    + Q    + ++
Sbjct: 189 TFFEDDIFSKVQTYLTSITSGVIYGVKFVLNVIVGLIISVYVMADQEHFAGQAKKIVYAM 248

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
            + +         R   ++      G  + +   G++      +  +P  V + VI  + 
Sbjct: 249 FKPVRANVIVDTVRKSNEIFSGFISGKILDSAIIGVLAYIVLAIMKMPDTVLVAVIIGVT 308

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP   P      S  +++  N        ++  +   I    + P ++G    L    
Sbjct: 309 NVIPFFGPFIGAVPSFIIIVLQNPIQGLYFLIFIVVLQQIDGNIIGPKILGSSTGLSAFW 368

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             F ++      G  G+ +G  LMA+I  +
Sbjct: 369 VVFAILVFGGLWGFPGMLLGVPLMAVIYYV 398


>gi|210617092|ref|ZP_03291402.1| hypothetical protein CLONEX_03624 [Clostridium nexile DSM 1787]
 gi|210149481|gb|EEA80490.1| hypothetical protein CLONEX_03624 [Clostridium nexile DSM 1787]
          Length = 382

 Score = 86.0 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 113/352 (32%), Gaps = 18/352 (5%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF------------LAVIA 66
           ++L  L F+     P +    I F           K   +                + + 
Sbjct: 30  VVLDGLGFIGRVIFPFVLGGAIAFVLNVPMHFIEEKFFGNKKMKENKWAKKFARPASFLI 89

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           T+  +   I  ++F+    + +    ++           V +W  +I         W   
Sbjct: 90  TILFVLGIIGIVVFVVAPALGDTA--MNLGRNIQAFIPQVQKWAENIFQDNKEIVKWIGS 147

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +       I S      NG   +           +    +     +   +       ++ 
Sbjct: 148 MEFKWDEMIKSGIDFFKNGAGSVLGSTFEAAKSIVSGVTTFFIAFVFSCYILLQKEKLNV 207

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTF----LGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           Q+  +     P  W +I   +  +   TF     G  + AI  G +   A  + G+P  +
Sbjct: 208 QVRKVMYAFMPKDWTEILLALSSLTYKTFSNFLTGQCVEAIILGSMFFVAMTIFGMPYAL 267

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            +G++ +  A+IP         +   L+   N   A    +   +   I    + P +VG
Sbjct: 268 LIGILISFTALIPIFGAFIGCVIGALLIFMVNPMQALIFVVMFLVLQQIEGNLIYPHVVG 327

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             + LP +     +  G   MG++G+ I   + +++  +++  +    + KE
Sbjct: 328 NSVGLPSIWVLVAVSIGASLMGIVGMLIFIPIASVVYTLFRGIVHRRLKEKE 379


>gi|160881382|ref|YP_001560350.1| hypothetical protein Cphy_3257 [Clostridium phytofermentans ISDg]
 gi|160430048|gb|ABX43611.1| protein of unknown function UPF0118 [Clostridium phytofermentans
           ISDg]
          Length = 540

 Score = 86.0 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 53/386 (13%), Positives = 119/386 (30%), Gaps = 31/386 (8%)

Query: 6   LNPQGIMRWMIMFIILVSLYF--------------LKGFFAPVLSALIIGFTSWPIYSSF 51
           LN   + + M++    V LY               + G   P +    I F        F
Sbjct: 3   LNHNNVKKIMLIITFTVLLYVGIQHFDVILMTFKYILGILTPFILGGCIAFILNVPLCLF 62

Query: 52  ISKKEE------------SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA 99
             K                     +++ + V  +       +         +L   + + 
Sbjct: 63  EDKLFRKGKTKNRFVNKIRRPVSILLSIILVASIIFTVTFLIIPELGSTFGDLADTITVF 122

Query: 100 NQHG-----IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFAS 154
            Q       I     L   P    + + ++K  ++  +  +     L    +        
Sbjct: 123 VQDAQKWVEIKSADLLIQYPEIGNSFKEFSKDWANLSAGLVSILKGLVYGVLGSAFSIIL 182

Query: 155 RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRST 214
                   + +  +F +  L    +      +   S            + ++  +   + 
Sbjct: 183 NIISGLTTFFIGFVFAVYILGNKEKLSEQGKKLCYSFLSLKRADRTIMVLQLAHRTFSNF 242

Query: 215 FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGN 274
             G  I A+  G +      +   P  + +GV+ +  A+IP    I  + +  +L+   N
Sbjct: 243 LSGQCIEAVILGSMFYITLSVLRFPYALLIGVLISFTALIPIVGGIIGSIIGTFLIFMVN 302

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
              A    +   +   I    + P +VGG + LP +   F +  G   MG+LG+ I   L
Sbjct: 303 PVQALWFIVIFNVLQQIEGNLIYPRVVGGSVGLPSIWVLFAVTIGGSLMGILGMLIFIPL 362

Query: 335 MALIAVIWKESIMAIKENKEKISSNF 360
            +++  + +E++      ++     +
Sbjct: 363 TSVVYTLLRENVKVRLNQRQIPEEKY 388


>gi|327490117|gb|EGF21905.1| permease [Streptococcus sanguinis SK1058]
          Length = 374

 Score = 86.0 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/334 (13%), Positives = 108/334 (32%), Gaps = 6/334 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +     P L    + + + P+      K + +     +I    +  L  + +++L    
Sbjct: 37  VVNTILIPFLVGGFLYYITNPLVKFLQDKLKINRMIGILITLSLLFGLIALGIIYLLPIL 96

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  L++               LS  P           ++        LS   +  N 
Sbjct: 97  INQLSSLINSTQGLYWEIQSFVNQLSKNPL------FRNLNIQSTIQQLNLSYVDILQNI 150

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           ++ +           ++  + +I   I L +F  DG  +   L+             +  
Sbjct: 151 LNSVTNSLGSVLSAVVNTLMILIMTPIFLVYFLMDGHKLLPMLERTVLKRDKLNISSLLT 210

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   +     G++I A+  G +    Y + G+   +   + +++  +IP   P      
Sbjct: 211 NLNATVARYISGISIDALIIGALAYIGYSVIGLKYALVFAIFSSLANLIPYVGPSIGLIP 270

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            +      +        ++  I   +    L P +VGG +K+  +     L+      G+
Sbjct: 271 MVITYAFTDPQKMVAALIYMLIIQQVDGNILYPRIVGGVMKVHPITIMVLLLLSSNIYGV 330

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           LG+ +     +++  I K        +KE     
Sbjct: 331 LGMIVAIPTYSILKEIAKFLANLYDNHKEAQQQK 364


>gi|318077539|ref|ZP_07984871.1| integral membrane protein [Streptomyces sp. SA3_actF]
          Length = 343

 Score = 86.0 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 97/287 (33%), Gaps = 14/287 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
               + AL+I     P+ +               + T+    +  +   F+ +  M  + 
Sbjct: 1   MLAFVVALLITALLQPLVARLTRHGVPR-GLATALTTLFGFLVMGLMGWFVVWQIMDNVD 59

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           +L S+V    +    + RWL D P  +   ++          +       + TN      
Sbjct: 60  QLSSQVQDGIE---DLRRWLLDSPFHVTEKQI--------NDIAKNLREAIGTNTDQLTS 108

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                   I ++    ++    +  F   DG  I      L                   
Sbjct: 109 AGIEGV-TIIVEMFTGLLLAFFSTIFLLYDGQRIWGWFLKLVPAAAREGVAGAGPRAWNT 167

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL- 269
           + S   G  I+A+ + + +G   ++  VP  V L VI  + A +P    +   A+++ + 
Sbjct: 168 LTSYVRGTVIVALIDAVFIGIGIYVLEVPMAVPLAVIIFLAAFVPLVGAVVSGALAVLVA 227

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           L+   ++ A  +     +   I    L+PF++G  +++  L     +
Sbjct: 228 LVTQGVWAAIIVLGVVLLVQQIEGHVLQPFILGRAVRVHPLAVVLSV 274


>gi|225627209|ref|ZP_03785247.1| permease [Brucella ceti str. Cudo]
 gi|260563757|ref|ZP_05834243.1| ATP/GTP-binding protein [Brucella melitensis bv. 1 str. 16M]
 gi|260566711|ref|ZP_05837181.1| ATP/GTP-binding protein [Brucella suis bv. 4 str. 40]
 gi|261757926|ref|ZP_06001635.1| ATP/GTP-binding protein [Brucella sp. F5/99]
 gi|265999531|ref|ZP_05466792.2| ATP/GTP-binding protein [Brucella melitensis bv. 2 str. 63/9]
 gi|225618044|gb|EEH15088.1| permease [Brucella ceti str. Cudo]
 gi|260153773|gb|EEW88865.1| ATP/GTP-binding protein [Brucella melitensis bv. 1 str. 16M]
 gi|260156229|gb|EEW91309.1| ATP/GTP-binding protein [Brucella suis bv. 4 str. 40]
 gi|261737910|gb|EEY25906.1| ATP/GTP-binding protein [Brucella sp. F5/99]
 gi|263094520|gb|EEZ18329.1| ATP/GTP-binding protein [Brucella melitensis bv. 2 str. 63/9]
 gi|326408734|gb|ADZ65799.1| permease [Brucella melitensis M28]
 gi|326538454|gb|ADZ86669.1| conserved hypothetical protein [Brucella melitensis M5-90]
          Length = 413

 Score = 86.0 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 47/326 (14%), Positives = 111/326 (34%), Gaps = 20/326 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G M + ++F+++ S   L     P ++ + + +   P+      K   S    +++  + 
Sbjct: 51  GAMAFFVLFLVVFSSVLL-----PFVAGMALAYFLDPVADRLE-KVGLSRLAASIVILLI 104

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + + I+ L+ +      ++ + +S +         +             SE   K++  
Sbjct: 105 FLMILIIGLMIVVPILATQLADFISNLPGYITQLQSLLA--------NRDSEWLKKYIGI 156

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
             ++   + + L   G  F+          G   +D     +   +  F+   D   +  
Sbjct: 157 DSTVIQQNLSSLLQQGAGFLSTLLQSLWNSGKSLIDIAGLFVVTPVVAFYMLLDWDRMVN 216

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +DS          ++I+R +   +     G   + +  G        L G+   + +G 
Sbjct: 217 SIDSWVPRKQLHTVRRIAREMNAAVAGFIRGQGTLCLILGTYYAIGLTLTGLNFGLLIGF 276

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
              +++ IP        A++I + +     +      +     +  FI    L+P LVG 
Sbjct: 277 FAGLISFIPYIGSFVGLALAIGVALVQFWPDWIMVCTVAAVFFLGQFIEGNILQPKLVGS 336

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLF 329
            + L  +   F L       G  G+ 
Sbjct: 337 SVGLHPVWLMFALFAFGSLFGFTGML 362


>gi|327459398|gb|EGF05744.1| permease [Streptococcus sanguinis SK1]
          Length = 365

 Score = 86.0 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 63/336 (18%), Positives = 121/336 (36%), Gaps = 17/336 (5%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS---TFLAVIATVSVMCLFIV 76
           I   L  L   F+P++   ++ F             ++          +A +  + + ++
Sbjct: 27  IWSGLQSLTSVFSPIILGGVLAFIFNVPMKKLEDLLDKCRVPQKLQRGLALILEVLILVL 86

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            +  +    +  +   V+++        P V +WL     G+ +S          Q+   
Sbjct: 87  IMTGIVSIVVPTLTTAVNQLSATIGKVAPQVAKWLQQ--SGLLSSSQLKDLTKQLQNSD- 143

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                +    I  +         IF ++  S+I  I  +F F      +      L + L
Sbjct: 144 -----IVNRAISLLGSLTGNISAIFGNFF-SVIMSIFLMFAFLSSKEHLQTITSRLLQVL 197

Query: 196 FPAYWKKISRIVPKVIRST----FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
            P    K    V  VI  T     +G  I A+  G+++  AY L G+P     GV+  ++
Sbjct: 198 LPEKAVKRLSYVGSVIVETYDKFLMGQMIEAVIVGILVFIAYSLTGLPYAALTGVLAGVL 257

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           + IP   P S  A+    +   + + A            I    + P +VG  + LP L 
Sbjct: 258 SFIPYIGPFSACALGAIFIFTDSPWKALLSIAVFQGVQLIEGNVIYPRVVGQSVGLPTLF 317

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           T    + G    GL+G+     + A+I  + +E ++
Sbjct: 318 TLAAALIGGNLFGLVGMIFFTPIFAVIYRLVREFVV 353


>gi|304316714|ref|YP_003851859.1| hypothetical protein Tthe_1261 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778216|gb|ADL68775.1| protein of unknown function UPF0118 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 343

 Score = 86.0 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 57/351 (16%), Positives = 131/351 (37%), Gaps = 17/351 (4%)

Query: 6   LNPQGIMRWMIMFIILVSLYF-------LKGFFAPVLSALIIGFTSWPIYSSFISKKEES 58
           +N + I   + M I+++ LYF       +K    P+  +++I +   P  S F  K    
Sbjct: 3   INKKYITYIIAMIIVILFLYFVFRNIDKIKEILFPIFISILIAYLVNPFVSFFEDK-GIK 61

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                +I    ++C+  + +LF+F     EM  L   +             + +      
Sbjct: 62  RVQSIIIVYFLLLCIMALTVLFIFPIITNEMSSLFKMLPGYIDDLTYKINDIKNNYLAYL 121

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             E  T  +     L     + +  +    I             + L++I   I  F+  
Sbjct: 122 PKEFSTVLVKRTSMLNKEIASMIDASIQSII---------SLTGHILNLILTPIITFYLL 172

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D   +  ++  +        + KI + +  V+     G   I+I   ++      +  V
Sbjct: 173 KDKDILKSEIKEIIPENMRGRFSKILKDLDSVMSKYIRGQIYISIIVTVLTSIGLMIIKV 232

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              V +G++  I+ +IP   PI  +  +I + +  +++     F+   +   I      P
Sbjct: 233 KYSVLIGILAGILNIIPYFGPILGSIPAIVMGLIDSLYKGIWAFVIFFLVQQIESAFFAP 292

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            ++   + L  +     L+ G +  G+ G+ +   ++A++ V+ K+  + +
Sbjct: 293 KIMSDSVDLHPITVIIALLVGEQFFGIWGMLLSVPVVAMVKVMLKDVFIEV 343


>gi|116512689|ref|YP_811596.1| permease [Lactococcus lactis subsp. cremoris SK11]
 gi|116108343|gb|ABJ73483.1| Predicted permease [Lactococcus lactis subsp. cremoris SK11]
          Length = 371

 Score = 86.0 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 47/345 (13%), Positives = 116/345 (33%), Gaps = 15/345 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           + +   +++F++    +  +         F P + A  + +   P+ +    K +    F
Sbjct: 13  EILAVTLLIFLLTKIQFVFQPIKTLLTLLFVPFIIAGFLYYVFNPVVTFMEEKLKIKKVF 72

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  + ++ + I  +  +    + ++  L++      +    +  W+  +      S 
Sbjct: 73  GIFIVLILILGMIIFAVASVIPSLITQLTSLIN---ATGKAYPQIRTWIEGLQHNPRFSH 129

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI---IALFFFY 178
           ++ +     +SL             + +       G I       I+ MI   I L++  
Sbjct: 130 IYEQL--DIKSLVERLNLSYTDILHNLLNSITISVGSIVSIITSIIMVMILVPILLYYML 187

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +DG  I   L             ++   +   I     G+ + A+   +V+   Y + G+
Sbjct: 188 KDGEKIIPFLKENVLTEDKLNIFELLENMNHTISRYISGVALDALLVFIVVFVGYMVLGI 247

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P      +   +  +IP   P       +  +       A    ++  +   +    + P
Sbjct: 248 PYAFLFALFAGVTNLIPYAGPYIGVLPMVVTVAFNRPITALIAVIYVLVLQQLDGNLVYP 307

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            +VG  +K+  +     ++      G+LG+ I      L+  I K
Sbjct: 308 KIVGSAVKVHPVTVMILMLISGSLYGILGMIIAVPAYCLVKEIVK 352


>gi|294852072|ref|ZP_06792745.1| hypothetical protein BAZG_00988 [Brucella sp. NVSL 07-0026]
 gi|294820661|gb|EFG37660.1| hypothetical protein BAZG_00988 [Brucella sp. NVSL 07-0026]
          Length = 413

 Score = 86.0 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 47/326 (14%), Positives = 109/326 (33%), Gaps = 20/326 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G M + ++F+++ S   L  F   +     + +   P+      K   S    +++  + 
Sbjct: 51  GAMAFFVLFLVVFSS-VLLPFVVGMA----LAYFLDPVADRLE-KVGLSRLAASIVILLI 104

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + + I+ L+ +      ++ + +S +         +             SE   K++  
Sbjct: 105 FLMILIIGLMIVVPILATQLADFISNLPGYITQLQSLLA--------NRDSEWLKKYIGI 156

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
             ++   + + L   G  F+          G   +D     +   +  F+   D   +  
Sbjct: 157 DSTVIQQNLSSLLQQGAGFLSTLLQSLWNSGKSLIDIAGLFVVTPVVAFYMLLDWDRMVN 216

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +DS          ++I+R +   +     G   + +  G        L G+   + +G 
Sbjct: 217 SIDSWVPRKQLHTVRRIAREMNAAVAGFIRGQGTLCLILGTYYAIGLTLTGLNFGLLIGF 276

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
              +++ IP        A++I + +     +      +     +  FI    L+P LVG 
Sbjct: 277 FAGLISFIPYIGSFVGLALAIGVALVQFWPDWIMVCTVAAVFFLGQFIEGNILQPKLVGS 336

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLF 329
            + L  +   F L       G  G+ 
Sbjct: 337 SVGLHPVWLMFALFAFGSLFGFTGML 362


>gi|319946477|ref|ZP_08020714.1| membrane protein [Streptococcus australis ATCC 700641]
 gi|319747445|gb|EFV99701.1| membrane protein [Streptococcus australis ATCC 700641]
          Length = 375

 Score = 86.0 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 47/333 (14%), Positives = 110/333 (33%), Gaps = 6/333 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L     P L A  + + + PI      K   +     ++  V++  L I  ++++    
Sbjct: 37  VLNTIILPFLIAGFLYYITNPIVEFLEKKFHLNRILGILLTLVTLFGLIIYGIVYILPIL 96

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  L++               LS  P           ++        LS   +  N 
Sbjct: 97  INQLTSLINSTQGLYWEVQSFVTKLSKNPAFQSI------NIQSTIQQLNLSYVDILQNI 150

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           ++ +           ++    ++   I L +F  DG  +   L+             +  
Sbjct: 151 LNSVTNSLGSVVSTIVNTLFILVMTPIFLVYFLIDGKKLLPMLERTILKNDRRNITSLLV 210

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + + +     G++I A+  G +    Y   G+   +   + +A+  +IP   P      
Sbjct: 211 SLNQTVSRYISGISIDALIIGTLAFIGYSFIGLKYALVFAIFSALANLIPYIGPTIGLIP 270

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            +      +        ++  I   I    L P +VGG +K+  +     L+      G+
Sbjct: 271 MVVTYAFTDFNMMVKAVIFMLIVQQIDGNILYPRIVGGVMKVHPITIMVLLLLSSNIYGV 330

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +G+ +   + ++   I K      + +K+    
Sbjct: 331 IGMIVAIPVYSIGKEIVKFLAALYENHKKTQKQ 363


>gi|89097465|ref|ZP_01170354.1| hypothetical protein B14911_27740 [Bacillus sp. NRRL B-14911]
 gi|89087761|gb|EAR66873.1| hypothetical protein B14911_27740 [Bacillus sp. NRRL B-14911]
          Length = 372

 Score = 86.0 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 49/333 (14%), Positives = 118/333 (35%), Gaps = 5/333 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P++ +  + F   P+ +   ++K    T   +I  + ++ L ++ +  L    
Sbjct: 39  FVSTLFFPIIISGFLYFLLNPVVNFLQARKLPR-TLAIIIIYLIIIGLIVLVIGSLVPII 97

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++  L + +    Q        LS         +        P      S        
Sbjct: 98  SKQVTALFNDLPTYAQRTRIYLENLSS----SQQFKWVMNQDYVPIENLERSLMEFANTI 153

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            D +    S    +  +  ++I+ +   LF+ ++DG      +       + +   K  +
Sbjct: 154 PDRVTNGISNVFSLVANITVTIVTVPFLLFYMFKDGGRFPAAISKFLPLSYRSEGLKTLK 213

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              + + +   G   +A+  G +    Y +  +P  + L +I A+  +IP   P    A 
Sbjct: 214 ETGETLAAYIQGQVTVALFVGTLAFIGYMIIDLPYALVLALIVAVTNIIPYVGPFLGGAP 273

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A    +  A+   +    L P ++G  +          L+      G+
Sbjct: 274 AVLIALFDSPAKAILAIIVIAVAQQVEGNILSPLILGKRLDTHPATIIILLLVAGNLAGI 333

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           LG+ +     A++  I    +  ++  +E + S
Sbjct: 334 LGMILAIPTYAVVKTIVMNFVRFLRAKRESVVS 366


>gi|242310532|ref|ZP_04809687.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239522930|gb|EEQ62796.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 353

 Score = 86.0 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 69/354 (19%), Positives = 142/354 (40%), Gaps = 20/354 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFL--KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           M N +G   +++ FI+ +         F   +L A ++   +  I+   + K + S  F 
Sbjct: 1   MSNSKGSYFFLVAFILTLLALLKLYSPFLMNLLIAFLLFIATQSIFQIILKKIK-SEFFS 59

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           +++ T+ ++ L  +P     +Y  + +    + V L     I        I       + 
Sbjct: 60  SLLMTLLLLLLCFMP----IFYVAINLASFATNVDLNGFQNIFALMQQKLINFSRQFFDY 115

Query: 123 WTKHLSHP-QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
               +    +SL +   +      +  I  F ++     + +    +F+++ LFFFY  G
Sbjct: 116 LPSAVQQEVESLLLRINSIDWAEIVKKILGFIAKLSANSIYFVSDAVFIVVFLFFFYFYG 175

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +    +   +     K +   V  VI   F    +  + +G++ G      G  + 
Sbjct: 176 NKLGKYFIEVIP-IDKQQIKSLYDEVSAVISVVFYSSILSMVLQGMLFGILMAFYGY-NA 233

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRP- 298
           + LGV     ++IP  G  + +  V+ Y L  GN  NA  + L+  I +  I D  ++P 
Sbjct: 234 ILLGVFYGFASLIPVVGGTLVWLPVACYELYLGNFTNAIIITLYSIIVIATIADNGVKPF 293

Query: 299 -------FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
                   L+  P+K+  +  FF ++ G+ + G  G+ +GP + AL   + +  
Sbjct: 294 IIAFINRVLIEEPVKINEMLIFFAIIAGLSSFGFWGIVLGPAITALFIAMLRIY 347


>gi|229829964|ref|ZP_04456033.1| hypothetical protein GCWU000342_02070 [Shuttleworthia satelles DSM
           14600]
 gi|229791262|gb|EEP27376.1| hypothetical protein GCWU000342_02070 [Shuttleworthia satelles DSM
           14600]
          Length = 397

 Score = 86.0 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 43/342 (12%), Positives = 106/342 (30%), Gaps = 22/342 (6%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFIS--------KKEESSTFLAVIATVSVMCLFIVPL 78
           + G   P++  +++     P+              +K  +      I  ++ + +F    
Sbjct: 47  ITGILKPLVFGIMVALLLSPVVHRLERGFSHVPILRKHRTRGLSVAITVLAALLVF---- 102

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            FL    +L       + V      I    +   I G               +S    + 
Sbjct: 103 -FLVASLLLSSLTNSLQAVSVENLKIIANNFQESISGIWSLVTEVMDRFHIDRSFLQEA- 160

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                N  ++    A+        +  +  F +I   +F  D            + + P 
Sbjct: 161 ---VNNASNWARNSATSAAKGVTGFMTTAFFSLIFSIYFMADHEGFIAYWTKAAKSILPE 217

Query: 199 Y----WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                + +              G  + A+  G+ +     L  VP  + +G++  I  +I
Sbjct: 218 REYSYFMEFLGNAGHAFIGYVRGQLLDAVFVGVTMSIILSLIEVPYALLIGMMMGIGNLI 277

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIKLPFLPTF 313
           P   P        ++ +     +   + L     +  +D   + P ++   + +  +   
Sbjct: 278 PYVGPAVGYVSVTFVCVFAQDHSKLLIALIAVFVVTTIDGNVINPRILSNAVSVHPVLVI 337

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             L+ G    G+ G+F+   + +LI + + + +    E  ++
Sbjct: 338 AALLVGSAVGGVTGMFLAVPVASLIRIYFDKLVDWRCEETDE 379


>gi|125718561|ref|YP_001035694.1| permease, putative [Streptococcus sanguinis SK36]
 gi|323351040|ref|ZP_08086697.1| membrane protein [Streptococcus sanguinis VMC66]
 gi|125498478|gb|ABN45144.1| Permease, putative [Streptococcus sanguinis SK36]
 gi|322122764|gb|EFX94473.1| membrane protein [Streptococcus sanguinis VMC66]
 gi|325687092|gb|EGD29115.1| permease [Streptococcus sanguinis SK72]
 gi|325690976|gb|EGD32976.1| permease [Streptococcus sanguinis SK115]
 gi|325695077|gb|EGD36980.1| permease [Streptococcus sanguinis SK150]
 gi|327462046|gb|EGF08375.1| permease [Streptococcus sanguinis SK1057]
 gi|327462955|gb|EGF09276.1| permease [Streptococcus sanguinis SK1]
 gi|327474559|gb|EGF19964.1| permease [Streptococcus sanguinis SK408]
 gi|328946877|gb|EGG41014.1| permease [Streptococcus sanguinis SK1087]
          Length = 374

 Score = 86.0 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 45/334 (13%), Positives = 108/334 (32%), Gaps = 6/334 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +     P L    + + + P+      K + +     +I    +  L  + +++L    
Sbjct: 37  VVNTILIPFLVGGFLYYITNPLVKFLQDKLKINRMIGILITLSLLFGLIALGVIYLLPIL 96

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  L++               LS  P           ++        LS   +  N 
Sbjct: 97  INQLSSLINSTQGLYWEIQSFVNQLSKNPL------FRNLNIQSTIQQLNLSYVDILQNI 150

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           ++ +           ++  + +I   I L +F  DG  +   L+             +  
Sbjct: 151 LNSVTNSLGSVLSAVVNTLMILIMTPIFLVYFLMDGHKLLPMLERTVLKRDKLNISSLLT 210

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   +     G++I A+  G +    Y + G+   +   + +++  +IP   P      
Sbjct: 211 NLNATVARYISGISIDALIIGALAYIGYSVIGLKYALVFAIFSSLANLIPYVGPSIGLIP 270

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            +      +        ++  I   +    L P +VGG +K+  +     L+      G+
Sbjct: 271 MVITYAFTDPQKMVAALIYMLIIQQVDGNILYPRIVGGVMKVHPITIMVLLLLSSNIYGV 330

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           LG+ +     +++  I K        +KE     
Sbjct: 331 LGMIVAIPTYSILKEIAKFLANLYDNHKEAQQQK 364


>gi|163790574|ref|ZP_02185003.1| Putative transport protein [Carnobacterium sp. AT7]
 gi|159874177|gb|EDP68252.1| Putative transport protein [Carnobacterium sp. AT7]
          Length = 364

 Score = 86.0 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 48/318 (15%), Positives = 113/318 (35%), Gaps = 11/318 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P++ A  + +   P+       K +            ++ +F++ L F+ +  
Sbjct: 39  FVSTLFTPIIIAGFLYYLLNPLIGQLEKIKIKRKY--------GIIIVFLLFLGFIVFLA 90

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH--PQSLKILSETFLKT 143
           +  +  L+ ++         V + L +    +    +            + +  E    T
Sbjct: 91  ISVIPNLIEQLGQLITSIPSVLKKLEEYSNELLQKPMLKNFDLEKSIGKMDLSIENIANT 150

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
                     S  G    +  + I  + I LF+ ++DG      +       +     ++
Sbjct: 151 IFTTLTASVGSLIGA-LANTTIVIFTVPIILFYMFKDGKHFRPAVAKFFPKDYRGQMIEL 209

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
              + + I S   G  ++ +   +     Y + G+P  + LG+I  +  +IP   P    
Sbjct: 210 LGQMNETIASYISGQALVCLFVAVFTYLGYMITGMPYGLLLGIIAGVTNIIPYIGPYIGA 269

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
           A ++ + +  +   A  + L   +   I    + P ++G  + +  L     L+      
Sbjct: 270 APAVIIALTISPTQALLVVLVVLVVQQIDGNFISPNVIGKTLSIHPLTIIIILLVAGNIA 329

Query: 324 GLLGLFIGPVLMALIAVI 341
           G+LG+ +G    A++  I
Sbjct: 330 GILGMILGVPTYAVVKTI 347


>gi|327330561|gb|EGE72308.1| putative permease [Propionibacterium acnes HL096PA3]
          Length = 386

 Score = 86.0 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 60/329 (18%), Positives = 124/329 (37%), Gaps = 14/329 (4%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            PV  AL++    WP+ +   S+        + I  + ++ L       +     L+ ++
Sbjct: 64  VPVAVALMLTAAMWPLANWL-SRHHIHRGIASGICLLLLVILVGGVFTLVGAQIALQWRQ 122

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L  + V + +  +   +WL+  P     ++L T  +   ++    S+          I  
Sbjct: 123 LGDQSVASFKQAL---QWLAKSPLHTNEAQL-THLMQKAEAAMAGSQ--------GRIAS 170

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
            A+  G     +   ++  + A FFF  +G  ++++   L      A     ++     +
Sbjct: 171 TAAAAGSQIGRFGAGLVMALFATFFFVYEGDKLAEKSAVLIPREHRAAILDAAKRGWVAL 230

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLL 270
            +      I+A  +GL  G    + G    VA+G +T I+A +P  GA  +       +L
Sbjct: 231 VAYVRAAVIVAFVDGLGAGIGAAIIGSSMSVAIGALTFILAFVPIVGALTAGVVAVGVVL 290

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +    F A  + +     + I    L+PFL+G  + +  L    G+  G    G++G   
Sbjct: 291 VTLGFFKAFIMLIVFVAVMQIEGHVLQPFLMGKAVSIHPLIVLLGIAVGAIISGIVGALF 350

Query: 331 GPVLMALIAVIWKESIMAIKENKEKISSN 359
              ++A      K        N+   + +
Sbjct: 351 AIPIVAFGVAFIKALNPETPANEVPPNHD 379


>gi|297616545|ref|YP_003701704.1| hypothetical protein Slip_0355 [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144382|gb|ADI01139.1| protein of unknown function UPF0118 [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 341

 Score = 86.0 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 116/338 (34%), Gaps = 12/338 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +++      LY ++    P   A+++ +  +P+      +     ++  ++  +    +
Sbjct: 16  ILVVLATSYFLYLVRQVMTPFAVAVVLAYLVFPVVHRIE-RIGIGRSYAILLVYLGAAAV 74

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
                 +     + E+  +          G  +P ++          E    +      +
Sbjct: 75  AGAVFYYAVPAMVREVGAV----------GALIPHYVGQAEQMAHRVENMAFNADSIDQM 124

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
              +    ++       RF       F    LSIIF  I  F+  +D   I      +  
Sbjct: 125 VDEAVERGRSYLYGLFRRFLEAI-FNFAHSILSIIFAPILAFYLTKDWEKIRDGFLDILP 183

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   K+ R +  V++    G  ++A+  G + G    L  V   + +G+I A+  +
Sbjct: 184 VSARQDTIKLGRDIDGVLKEFIKGHLLVAVLVGSMTGLGAALLKVKFALLIGMICAVAEL 243

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
            P   PI     S+ L    +   A  +     +   +    L P ++GG + L  L   
Sbjct: 244 FPYFGPILGAIPSVGLAYAQSPRLAAYVAFIILVVQQVEASILSPRILGGKVGLHPLVVV 303

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           F L+ G    G+ G+ +   + A+I ++       + E
Sbjct: 304 FALLAGGELYGIWGMLLAVPVAAVIKILGSFFFYKVVE 341


>gi|314968334|gb|EFT12433.1| conserved hypothetical protein [Propionibacterium acnes HL037PA1]
          Length = 386

 Score = 86.0 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 60/329 (18%), Positives = 124/329 (37%), Gaps = 14/329 (4%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            PV  AL++    WP+ +   S+        + I  + ++ L       +     L+ ++
Sbjct: 64  VPVAVALMLTAAMWPLANWL-SRHHIHRGIASGICLLLLVILVGGVFTLVGAQIALQWRQ 122

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L  + V + +  +   +WL+  P     ++L T  +   ++    S+          I  
Sbjct: 123 LGDQSVASFKQAL---QWLAKSPLHTNEAQL-THLMQKAEAAMAGSQGH--------IAS 170

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
            A+  G     +   ++  + A FFF  +G  ++++   L      A     ++     +
Sbjct: 171 TAAAAGSQIGRFGAGLVMALFATFFFVYEGDKLAEKSAVLIPREHRAAILDAAKRGWVAL 230

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLL 270
            +      I+A  +GL  G    + G    VA+G +T I+A +P  GA  +       +L
Sbjct: 231 VAYVRAAVIVAFVDGLGAGIGAAIIGSSMSVAIGALTFILAFVPIVGALTAGVVAVGVVL 290

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +    F A  + +     + I    L+PFL+G  + +  L    G+  G    G++G   
Sbjct: 291 VTLGFFKAFIMLIVFVAVMQIEGHVLQPFLLGKAVSIHPLIVLLGIAVGAIISGIVGALF 350

Query: 331 GPVLMALIAVIWKESIMAIKENKEKISSN 359
              ++A      K        N+   + +
Sbjct: 351 AIPIVAFGVAFIKALNPETPANEVPPNHD 379


>gi|312868423|ref|ZP_07728623.1| putative membrane protein [Streptococcus parasanguinis F0405]
 gi|311096168|gb|EFQ54412.1| putative membrane protein [Streptococcus parasanguinis F0405]
          Length = 375

 Score = 86.0 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 49/318 (15%), Positives = 107/318 (33%), Gaps = 6/318 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L     P L A  + + + PI        +    F  +I  V +  L  + + +L    
Sbjct: 37  VLNTILLPFLIAGFLYYITNPIVELLEKHLKIKRVFGILITLVLLFGLIGLGIFYLLPIL 96

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  L++           + R LS  P           ++        LS   +  N 
Sbjct: 97  INQLTSLINSTQGLYWEVQSLVRKLSTNPL------FQNVNIQSTIQQLNLSYMDILQNL 150

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           ++ +           ++    +I   I L +F  DG  +   L+         +   +  
Sbjct: 151 LNSVTNSLGSVVNTIVNTVFILIMTPIFLVYFLIDGKKLLPMLERTILRNDKLHISSLLV 210

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + + +     G++I A+  G +    Y   G+   +   + + +  +IP   P      
Sbjct: 211 SLNETVSRYISGISIDALIIGTLAYIGYSFIGLKYALVFAIFSGLANLIPYVGPTIGLIP 270

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            I      ++       ++  I   I    L P +VGG +K+  +     L+      G+
Sbjct: 271 MIITYAFTDVDMMIKAVIYMLIIQQIDGNILYPRIVGGVMKVHPITIMVLLLLSSNIYGI 330

Query: 326 LGLFIGPVLMALIAVIWK 343
           +G+ +   + ++   I K
Sbjct: 331 IGMVVAIPVYSIGKEIVK 348


>gi|302553875|ref|ZP_07306217.1| integral membrane protein [Streptomyces viridochromogenes DSM
           40736]
 gi|302471493|gb|EFL34586.1| integral membrane protein [Streptomyces viridochromogenes DSM
           40736]
          Length = 465

 Score = 85.7 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 49/320 (15%), Positives = 113/320 (35%), Gaps = 23/320 (7%)

Query: 17  MFIILVSLYFLKGFFAPV-------LSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           + ++  +L+ L    + V       +SAL+I     P       ++       A   T  
Sbjct: 107 LLVLAGTLWVLMRVISAVQLVVLAFVSALLITALLQPTVGRL--RRLGVPRGPATAMTAI 164

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMWASELWTKHLS 128
           +  +    +  + ++   ++ E +  +    Q+GI   R WL + P  +   ++     +
Sbjct: 165 LGFVV---MGLIGWFVTWQVMENIDDLSGQIQNGIDELRNWLLNSPFHVTDKQINEIAKN 221

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             +++   ++                    + ++    I+  + +  F   DG  I +  
Sbjct: 222 LREAVGANTDQITSAGLEGV---------TVVVEALTGILLAVFSTLFLLYDGKRIWEWT 272

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L                 + + +   G  I+A+ + + +G   +   VP  V L V  
Sbjct: 273 LRLVPAAARPGMAGAGPAAWRTLTAYVRGTVIVALIDAIFIGLGIYFLDVPMAVPLAVFI 332

Query: 249 AIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A IP    +   A+++ + L+   +F A    +       I    L+PF++G  +++
Sbjct: 333 FLFAFIPLVGAVVSGALAVVVALVTQGVFTAVMTLVVVLAVQQIEGHILQPFILGRAVRV 392

Query: 308 PFLPTFFGLVGGVRTMGLLG 327
             L     +  G    G+ G
Sbjct: 393 HPLAVVLSVAAGGMVAGIGG 412


>gi|293385024|ref|ZP_06630858.1| membrane protein [Enterococcus faecalis R712]
 gi|293389294|ref|ZP_06633756.1| membrane protein [Enterococcus faecalis S613]
 gi|312906013|ref|ZP_07765026.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 512]
 gi|312909359|ref|ZP_07768215.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 516]
 gi|291077702|gb|EFE15066.1| membrane protein [Enterococcus faecalis R712]
 gi|291081458|gb|EFE18421.1| membrane protein [Enterococcus faecalis S613]
 gi|310628008|gb|EFQ11291.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 512]
 gi|311290383|gb|EFQ68939.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 516]
          Length = 404

 Score = 85.7 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 53/334 (15%), Positives = 112/334 (33%), Gaps = 7/334 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F    FAPVL A  + +   P+ +  + K +    +  ++  + ++   ++ LL +    
Sbjct: 63  FFSTLFAPVLVAGFLYYLLNPVVN-LLMKTKMKRIYAVLLVFLLLIIALVLILLTIIPKL 121

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++  L S +    +        ++++P            L+       +S   +    
Sbjct: 122 ADQLASLASSMPDFFKQVETWIYEIAELPIFKQID------LTSYIEKMDISYANIIQQF 175

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +               + ++     LF+  +DG  +   +              +  
Sbjct: 176 LSSLSSSLGSIVSTVASTTIVLVTAPFILFYMLKDGDKLVPAVQRFLPEKRKDDIVDLLG 235

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + + + S   G  I  +  G      Y L GV      GVI     +IP   P    A 
Sbjct: 236 QLNQTLSSYISGQAIECLFVGTFTIIGYSLLGVRYAFLFGVIAGFTNLIPYLGPYLGLAP 295

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + I      A    L   +   +    + P ++G  +K+  L     L+      GL
Sbjct: 296 AVLVTIFNEPVKAALCCLVVLVVQQLDGNIIYPNVIGKSLKIHPLTIILILLVAGNLAGL 355

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           LG+F+G    A+        I  +K  + +  +N
Sbjct: 356 LGIFLGVPFYAICRTTIYYVIDMVKAGRSEKVTN 389


>gi|270264618|ref|ZP_06192883.1| hypothetical protein SOD_i00350 [Serratia odorifera 4Rx13]
 gi|270041301|gb|EFA14400.1| hypothetical protein SOD_i00350 [Serratia odorifera 4Rx13]
          Length = 356

 Score = 85.7 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 51/358 (14%), Positives = 121/358 (33%), Gaps = 16/358 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +PQ I   +I+    + LYFL G   P+L A+++ +   WP     + +   S  
Sbjct: 10  RRRFTDPQAIALLVILVAGFLILYFLHGILTPLLVAIVLAYLLEWPTAR--LQRIGCSRN 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWA 119
           + A +  +    + ++ +  +      +   L++ +  + NQ            P  + A
Sbjct: 68  WAASLVMIMFAGIAMLLVFVVAPTAWQQGINLMTDLPGMLNQFYNFAATLPKRYPALVDA 127

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
             +     +    L  + E+ +K +    +           L   + +I + + +FF  +
Sbjct: 128 GIIDMMAENLRGRLSGMGESVVKFSLASLV---------GLLTLAIYLILVPMMMFFLLK 178

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D   +   +  +         +     + + I +   G  +  +  G+     + +  + 
Sbjct: 179 DKEQMLNAVRRVLPRNRGLAGQVWIE-MNQQITNYIRGKVLEMVIVGVATYLVFVILDMR 237

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLR 297
             + L V+     +IP    +  T   +   +   G   +   L +   +   +    L 
Sbjct: 238 YSLLLAVLVGFSVLIPYIGAVLVTIPVVVVAMFQWGVGADFWTLIVAYLVVQALDGNLLV 297

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           P L    + L  L     ++      G  G+F    L  L+  +       ++   E+
Sbjct: 298 PILFSEAVNLHPLVIILSVIIFGGLWGFWGVFFAIPLATLVKAVIHAWPDELRVETEQ 355


>gi|319786686|ref|YP_004146161.1| hypothetical protein Psesu_1080 [Pseudoxanthomonas suwonensis 11-1]
 gi|317465198|gb|ADV26930.1| protein of unknown function UPF0118 [Pseudoxanthomonas suwonensis
           11-1]
          Length = 398

 Score = 85.7 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 134/352 (38%), Gaps = 16/352 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q +   ++  + L  +  L     P +   ++G+   P+           +        V
Sbjct: 16  QQLKWIVLALVALWMVGLLAPILTPFVLGALLGWMGDPLVDRLERAGRSRN--------V 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKH 126
           +V  +F +  L L    ++ +  L  +V    +       W  D  +P     + L    
Sbjct: 68  AVTLVFGLMTLLLVLALLILVPMLERQVRTLVETLPEYREWFVDTAVPWLEARTGLELSV 127

Query: 127 LSHPQSLKILSETFLKTNGI--DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
              P+          +  G     +  + SR G   + + ++++ + I  F+F RD   +
Sbjct: 128 WLDPERAVNWVREHWQQAGGVATSVAGYISRSGFAMVAWVVNLVLLPILTFYFLRDWDLL 187

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +++ +L          +++R    V+ +   G  ++ I  G +      L+G+   + +
Sbjct: 188 VERVAALVPRDHLDTVTRLARESNDVLGAFLRGQFVVMIALGAIYAIGLQLSGLKLGLLI 247

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE---LFIVDKTLRPFL 300
           G+I  +++ IP  GA        +  L++   F+   L L G +      +    L P +
Sbjct: 248 GLIAGLISFIPYLGATTGIVLAVVAALVQAQGFDTRLLVLVGVVFTVGQLLESYVLTPRI 307

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           VG  I L  +   F ++ G +  G LG+ I     A+I V+ + +    +++
Sbjct: 308 VGDKIGLHPVAVIFAVMAGGQLFGFLGMLIALPAAAVINVLLRYAAERYRQS 359


>gi|119469488|ref|ZP_01612392.1| predicted inner membrane protein [Alteromonadales bacterium TW-7]
 gi|119447023|gb|EAW28293.1| predicted inner membrane protein [Alteromonadales bacterium TW-7]
          Length = 359

 Score = 85.7 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 119/355 (33%), Gaps = 14/355 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +    ++ + +  LYF      PVL AL+I +   WP+    + +         VI
Sbjct: 15  DPHSVTLLFLLLVSVALLYFFGSLIVPVLVALVIAYLLDWPVVH--LERLGLRRFTATVI 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +    + +  +L +      +   LV +     + G      L +    +  ++    
Sbjct: 73  VMLIFTGIMLTLILVIGPVLWKQTSNLVQETPHMLEQGKSYLVALPEQYPSLINADQVQG 132

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            ++  ++  I             +  F+       + + + ++ + + +FF  +D   ++
Sbjct: 133 IVATVEAKVIEL--------GQVVLSFSLTSLKDVVAWLIYLVLVPLLVFFMLKDKLELT 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +  L          ++   + + I +   G     +  G V   A+    +     LG
Sbjct: 185 GSVAKLIPQQRRLIL-QVWNEMNQQIMNYIRGKVFEILIVGGVSFIAFTFLDLRYAALLG 243

Query: 246 VITAIMAMIPG-GAPISFTA-VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V+     +IP  GA +      ++ L   G       + +   I   +    L P L   
Sbjct: 244 VLVGFSVLIPFVGAALVTIPVAAVALFQFGLETQFWTILIIYGIIQALDGNVLVPLLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            + L  +     ++      G  G+F    L +L+  +        +E   K++ 
Sbjct: 304 AVDLNPVFIIVAVLFFGGLWGFWGVFFAIPLASLVKALITAWSSTQEELNNKLTE 358


>gi|84501590|ref|ZP_00999762.1| membrane protein [Oceanicola batsensis HTCC2597]
 gi|84390211|gb|EAQ02770.1| membrane protein [Oceanicola batsensis HTCC2597]
          Length = 357

 Score = 85.7 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 57/340 (16%), Positives = 125/340 (36%), Gaps = 14/340 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             I L++L+++     P L    + +   P+          S      I T+  + +F++
Sbjct: 16  AAIFLLALWWMGDVILPFLLGGAVAYFLDPVADRIEDA-GASRAVATAIITLFGLLIFVL 74

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             L +    + +  +L   V     +                  EL     +  +SL  +
Sbjct: 75  LALLVIPNLIDQAIQLFDTVPKVLHNFQAFLT--------SRFPELLDDGSTIRRSLTSV 126

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            ET +++ G   +    +  G   ++  +  + + +  F+   D   + + +D L     
Sbjct: 127 GET-IQSRGGQLLETALTSVGS-LINIVMLFVIVPVVAFYLLYDWDRMMEDIDDLLPREH 184

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               ++++R + + + S   GM  + +  G     A  L G+   + +G +  ++  IP 
Sbjct: 185 APAIRRLAREIDETLASFIRGMGTVCLILGTYYAIALMLVGLQFGLVVGAVAGLITFIPY 244

Query: 257 GAPISFTAVSIYLLIKGNIF-NATCLFLWGAIELFIV--DKTLRPFLVGGPIKLPFLPTF 313
              +   A++I L +        +   + G   L  V     L P LVG  + L  +   
Sbjct: 245 VGALVGGALAIGLALFQFWGDWVSIGLVAGIFVLGQVVEGNILTPKLVGDSVGLHPVWLI 304

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           F L       G +G+ +   + A I V+ +  +   KE++
Sbjct: 305 FALSVFGSLFGFVGMLVAVPVAAAIGVLMRFVVSQYKESR 344


>gi|299769104|ref|YP_003731130.1| hypothetical protein AOLE_04300 [Acinetobacter sp. DR1]
 gi|298699192|gb|ADI89757.1| hypothetical protein AOLE_04300 [Acinetobacter sp. DR1]
          Length = 397

 Score = 85.7 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 55/334 (16%), Positives = 126/334 (37%), Gaps = 18/334 (5%)

Query: 28  KGFFAPVLSALIIGFTSWPI-----YSSFISKKEESSTFLAVIATVSVMCLFIVPLLF-L 81
           K    P + A  + +   P+               S  F+ +  T+++   ++VPL++  
Sbjct: 26  KPVVIPFIGAFFLAYLFSPLVDVLVKIKLPRWLAISVVFIGIGVTLTIALWYLVPLIWKQ 85

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
             Y    +   +  +         +  W+S         ++        +++    +T  
Sbjct: 86  LVYARDSIPAGIHWINAE------LLPWVSST---FNVQQMEIDTDQMSKAVMDYVQTNY 136

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             + I  +    ++ G+ F+    +++ + I  F+F  D   + Q L  L    + A   
Sbjct: 137 SADSIQAVLLKLAQSGLNFIQIGGTVVLIPIIAFYFLLDWDRMLQNLRRLIPRPYEATTL 196

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +I      V+ +   G  ++ +  G+V      L G+   + +G++  + ++IP      
Sbjct: 197 QIVGECHSVLGAFVKGQFLVMLLLGVVYAVGLQLIGLEVGLIIGMVAGLASIIPYLGFAV 256

Query: 262 FTAVSIY--LLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
               ++   L   G +  +   + +   I   +    L+PFL+G  I L  +   F ++ 
Sbjct: 257 GIIAAVIASLFQFGLDWMHLLLVGVVFMIGQAVEGYILQPFLLGDKIGLSPVAVVFAVLA 316

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           G +  G LG+ I   + A+I V+ K      + +
Sbjct: 317 GAQLAGFLGMLIALPVAAVIVVLLKHLRENYERS 350


>gi|294635431|ref|ZP_06713920.1| permease, PerM family [Edwardsiella tarda ATCC 23685]
 gi|291091200|gb|EFE23761.1| permease, PerM family [Edwardsiella tarda ATCC 23685]
          Length = 356

 Score = 85.7 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 54/362 (14%), Positives = 122/362 (33%), Gaps = 16/362 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +PQ I    I+ +    +YF  G  AP+L A+++ +   WP     +     S  
Sbjct: 7   RRRFTDPQAIALLTILLVGFCIIYFFNGILAPLLVAIVLAYLLEWPTNK--LEGIGCSRI 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWA 119
           +   +  +  + + +V +L L      +   L+  +  +  +            P  M A
Sbjct: 65  WAVCVVLLVFIGIVLVTMLVLIPIVWQQGLGLMGDMPKMVTRFYEYAATLPRRYPALMDA 124

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
             +     +    + ++ E+ LK +    +           +   + ++ + + +FF  +
Sbjct: 125 GIIDVVVENLRARMALMGESVLKFSLASLV---------GMVTLAIYLVLVPLMVFFLLK 175

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D   +   L  +         +     + + I +   G  +  I  G+     + + G+ 
Sbjct: 176 DKEQMLNALRRVLPRERGLAGQVWLE-MNQQITNYIRGKVVEMIVVGVATYLVFLILGLN 234

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTLR 297
             + L V+  +  +IP  GA +    V +  L +  +      LF+   +   +    L 
Sbjct: 235 YGLLLAVLVGVSVLIPYIGAVLVTIPVVLVALFQWGMGADFWTLFIAYLVVQGLDGNVLV 294

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           P L    + L  L     ++      G  G+F    L  L+  +               +
Sbjct: 295 PLLYSEAVNLHPLVIILSVIIFGGLWGFWGVFFAIPLATLVKAVIHAWPDDFGNEAPGDT 354

Query: 358 SN 359
           + 
Sbjct: 355 AK 356


>gi|255650757|ref|ZP_05397659.1| hypothetical protein CdifQCD_11271 [Clostridium difficile
           QCD-37x79]
          Length = 327

 Score = 85.7 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 45/321 (14%), Positives = 108/321 (33%), Gaps = 2/321 (0%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P + A ++ +   P+     SK      +  ++    ++ + I  +LF     +  + 
Sbjct: 4   LTPFIIAFVLAYIFNPLVKFLESKLNFKRIYSLLLTYGVLIVILISFILFTVPSIVNSLA 63

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           +LV+++             L      +  + L          +   S   + + G   I 
Sbjct: 64  DLVAQIPTYIDKTEQFLFDLGKSLQSVDPNTLKEYGDKIMSVMPKFSNLLIGSLGG--IF 121

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                 G   + + L  I     L    +      + +       +  +  ++ + +   
Sbjct: 122 STTFSVGKFIVQFLLGFIICFYILLEKEKFLLFTKKVVYISLGKKYGDFIIELCQSLNLN 181

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           I   F G  + +   G++ G   +       +  G +  +M M+P   P+   A  + + 
Sbjct: 182 IGKYFTGKILDSFIVGVLSGIGLYFLKSEYALLFGTLMGVMNMVPYFGPVIGMAPVVIIN 241

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +  N   A    ++  I   +    + P +VGG + L    T   +  G    G+ G+ +
Sbjct: 242 LFSNPTIALTSLIYLIIIQQVEVTFIEPKIVGGQLGLSPFFTILAVTVGGGFFGIPGMIL 301

Query: 331 GPVLMALIAVIWKESIMAIKE 351
              +M +I + + E +    +
Sbjct: 302 SAPVMGVIKIYFCEFVNRRHD 322


>gi|170746926|ref|YP_001753186.1| hypothetical protein Mrad2831_0492 [Methylobacterium radiotolerans
           JCM 2831]
 gi|170653448|gb|ACB22503.1| protein of unknown function UPF0118 [Methylobacterium radiotolerans
           JCM 2831]
          Length = 374

 Score = 85.7 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 50/356 (14%), Positives = 118/356 (33%), Gaps = 16/356 (4%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  + ++    +  + + +Y L+    P ++ + + +   P+                +I
Sbjct: 1   MRARAVIGLAAVVALGLIVYLLREVMLPFVAGITLAYLLDPLADRLERLGLGRLAASLLI 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + V+ L +  L+ +            ++VV        +   L  I      + L   
Sbjct: 61  LALFVVALVVTLLILIPLTA--------NQVVALVNALPGMVSRLQAIIAERSGTLLERV 112

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFG---MIFLDYCLSIIFMIIALFFFYRDGF 182
             ++  +    S   L T    ++  F           +     ++   +  F+   D  
Sbjct: 113 GGANVLNELQSSVGTLATQAGTWLLAFLKSLWSGSQALISIASLLVVTPVVAFYILVDWD 172

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +   +D        A  ++++R +   +     G T++ +  G       WL G+   V
Sbjct: 173 RMVAAIDGWVPPRHRATVRELARQIDGAVTGYVRGQTLVCLILGSFYAIGLWLVGLNFGV 232

Query: 243 ALGVITAIMAMIPG-----GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
            +G+I   +  IP      G  +S     +      +  +         +  F+    + 
Sbjct: 233 LIGLIAGFLTFIPYVGTLTGFLLSVGVALVQFWPSADWLHLGLTVGVFLVGQFLEGNVIS 292

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           P LVG    L  +   F L+      G +GL +   + A I V+ + ++    E++
Sbjct: 293 PKLVGDSTGLHPVWLMFALLAFGTLFGFVGLLLAVPIAASIGVLVRFALARYLESR 348


>gi|167769436|ref|ZP_02441489.1| hypothetical protein ANACOL_00766 [Anaerotruncus colihominis DSM
           17241]
 gi|167668404|gb|EDS12534.1| hypothetical protein ANACOL_00766 [Anaerotruncus colihominis DSM
           17241]
          Length = 438

 Score = 85.7 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 47/339 (13%), Positives = 107/339 (31%), Gaps = 11/339 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEES-----------STFLAVIATVSVMCLFI 75
           + G   P + A  I +   P+                           ++  +    +  
Sbjct: 43  VAGLLMPFVYAFGIAYILNPVLKVVERVFLRRLFGTRIGDKPMRALAILLTYLFSAGMIA 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +    +    +L +  L++K+             L  + G    S      L       +
Sbjct: 103 IFAKIVLPQLVLSISGLIAKMTAYLNSTETWLPGLLALLGDFDISATIETALRQYADTIM 162

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S   +      ++   ++      L   + II  I  L    R    I +   ++    
Sbjct: 163 SSAMTMLKQLFPWMLSVSTGIASGLLTIVVGIIISIYMLMDKERFCAGIKKIWYAVLPKK 222

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
              +   ++     V      G  + ++  G++      L G+PS + + VI  +  +IP
Sbjct: 223 NADWILDLAAEANHVFGGFIGGKILDSLIIGILCFIGMSLLGMPSAMLVSVIVGVTNVIP 282

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P      S ++++      A    ++  I        L P ++G    L      F 
Sbjct: 283 YFGPFIGAIPSFFIILIDAPIKALWFLVFILILQQFDGNILGPKILGDSTGLSAFWVIFA 342

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           ++      G +G+F+G  + ++I ++ +  I +    +E
Sbjct: 343 IMLFGGLYGFIGMFLGVPVFSVIYMLIQRFIDSRLSARE 381


>gi|26988399|ref|NP_743824.1| hypothetical protein PP_1667 [Pseudomonas putida KT2440]
 gi|24983154|gb|AAN67288.1|AE016355_6 transporter, putative [Pseudomonas putida KT2440]
          Length = 357

 Score = 85.7 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 51/342 (14%), Positives = 123/342 (35%), Gaps = 14/342 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             +I V LY L     P L  +++ + + P+           +          V+ +F +
Sbjct: 13  ALLIAVLLYSLHNILTPFLVGIMLAYLADPLVDRLERLGLSRTW--------GVVVVFGL 64

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK---HLSHPQSL 133
             L L    ++ +  L  ++V   +    +  WL  +        L              
Sbjct: 65  FTLLLLALLLVLVPMLAKQLVRLYELAPQMLDWLEHVALPWVQGRLGLADGFWKFDKIKA 124

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            I +     T+ +  +   A+   +  + +  +++ + +  F+  RD   +  +L  L  
Sbjct: 125 AIGAHMGQTTDIVGMLLSQATASSLALVAWLANMVLIPVVGFYLLRDWDLMMGKLRGLLP 184

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                    ++    +V+ +   G  ++ +  G++  +   L G+   + +G++  + A+
Sbjct: 185 RQREPQVMGLAGECHEVLGAFVRGQLMVMLALGVIYSAGLMLVGLELGLLIGMLAGLAAI 244

Query: 254 IPGGAPISFTAVSI---YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +P    I     ++        G+++    +     +   +    L P LVG  I L  +
Sbjct: 245 VPYMGFIIGIGAALVAGLFQFGGDLYPMLGIVAVFMVGQALEGMVLTPLLVGDRIGLHPV 304

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              F ++ G    G  G+ +   + A+I V+ +      KE+
Sbjct: 305 AVIFAILAGGELFGFTGVLLALPVAAVIMVLLRHVHDLYKES 346


>gi|157827022|ref|YP_001496086.1| permease PerM-like protein [Rickettsia bellii OSU 85-389]
 gi|157802326|gb|ABV79049.1| Permease PerM-like protein [Rickettsia bellii OSU 85-389]
          Length = 351

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/350 (15%), Positives = 120/350 (34%), Gaps = 7/350 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N   I   + + I +     +     P   A II +   P      SK + S+   +++
Sbjct: 1   MNKTAIFWLLFIGIFISGFMLISEAIRPFFIAFIISYLLQPAIEFVASKFKLSNKISSIV 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + +F   L  L      ++   V+ +     +          +P  M        
Sbjct: 61  VYLIFLSIFFTALTLLVPVIYGQVSTFVNNIPKYKDYFQAEI-----LPPIMTKIYAVEP 115

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +++      + +        +  +      + +I ++  +  + + I LF+F RD   I 
Sbjct: 116 NIADKIRDSLSNFINSIFTILGSLANNFWHYTLITINIFVLFLLIPIILFYFLRDWTRII 175

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + + SL           I   +  ++ +   G   I +   +    ++ + G+   + LG
Sbjct: 176 ENMKSLLPLKSRHKILGILSSINSLLAAYIRGQLNICLLLSIYYSISFSIIGIDLALLLG 235

Query: 246 VITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           ++T  + +IP        F  ++I  L  G       + +   I        L P ++G 
Sbjct: 236 ILTGFLVIIPFIGTFISCFLTLTIGYLTFGATTQLFYIMVVYIIGNICESYILTPKIIGD 295

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            I L  L   F +       G +G+F    +  +  ++    I   K ++
Sbjct: 296 KIGLHPLWIIFSIFACGSLFGFIGIFFAIPIAGVTKILLFNIIKFYKSSR 345


>gi|241895545|ref|ZP_04782841.1| permease [Weissella paramesenteroides ATCC 33313]
 gi|241871123|gb|EER74874.1| permease [Weissella paramesenteroides ATCC 33313]
          Length = 382

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/323 (13%), Positives = 107/323 (33%), Gaps = 4/323 (1%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
           AP++ A +  F   P+      +          I  + +  L I  L     +   ++  
Sbjct: 56  APIIIAGVFYFLLNPMVDWAERRFNFPRIATISIQFIVLAVLIIWGLAVFIPWMSSQIIS 115

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           LV++        + +    +        ++ +    S   +            G+  +  
Sbjct: 116 LVNEWPTYWHKIVTMINHFTSNKQFNAVNKWFNTTNSEISTWLKDYSAEYAKKGLHGVSS 175

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                        ++II     LF+  +DG  +   +           + ++ + +   I
Sbjct: 176 VV----GTVTSVVIAIITFPFVLFYLLKDGHQMPAYIAKFLPVKARRSFLEMLKEISTQI 231

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
            +   G   +A    ++    Y + G+P    + ++  I+ +IP          ++ + I
Sbjct: 232 SNYIRGQISVAFAVMIMFAIGYTIIGLPYGWLIAIVAGILNIIPFLGSFLAMVPAVVVGI 291

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
             +      + +   IE  +  + + P L+G  +K+  +     L+      G+LG+  G
Sbjct: 292 FVSPVMLISVLVVFMIEQTLEGRIISPKLLGSSMKIHPVTVLIVLLSAGNIFGILGVIFG 351

Query: 332 PVLMALIAVIWKESIMAIKENKE 354
               A++ V+        + + +
Sbjct: 352 VPGYAILKVLIYRFYNWWQTSSD 374


>gi|304385354|ref|ZP_07367699.1| permease [Pediococcus acidilactici DSM 20284]
 gi|304328561|gb|EFL95782.1| permease [Pediococcus acidilactici DSM 20284]
          Length = 376

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/342 (15%), Positives = 124/342 (36%), Gaps = 18/342 (5%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFIS----KKEESSTFLAVIATVSVMCLFIVPLLFL 81
           F+   F P++ A  + +   P+    +     K   S T+  V+  V  + L +  +   
Sbjct: 40  FISTVFMPLILATFLYYMLHPLVKLLMKVHYKKFRISRTWAVVLVFVGFLLLIVWGISSF 99

Query: 82  FYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
               + ++ +++  + ++A +  + +P+ +              K    P    + +E  
Sbjct: 100 LPSLIDQISQMLGNLPMIAKKLQVAIPQLVDH--------SWLRKVDFDPYLKNLNNE-- 149

Query: 141 LKTNGIDFIPRFASRFGMI---FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
           +      F+    +  G I     +  + +I + I LF+  +DG+ +   +  +      
Sbjct: 150 IGQYAEQFLANMTNSIGNIIAALTNITVIVITVPIILFYMLKDGYKLIPTISRIVPEHNR 209

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   +   + S   G  I  I  G      Y +   P  + LGVI  I  +IP  
Sbjct: 210 KSVLNLFYSMSDTLSSYISGQVIECIFVGTFTVIGYMIIHQPYGLVLGVIAGICNIIPYV 269

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P      S+ + I  +      + +   I   +    + P ++G  +++  L     L+
Sbjct: 270 GPYFGIFPSLLVAIAQSPEQVISVIIVVLIVQQVDGNLIYPNVIGKSLQIHPLTIIILLL 329

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              +  G+LG+ +     A++ V+          +++KI   
Sbjct: 330 VAGKLAGILGMILAVPTYAIVKVLINFIHHIWVLDRDKIEEK 371


>gi|126642639|ref|YP_001085623.1| PerM family permease [Acinetobacter baumannii ATCC 17978]
          Length = 370

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/331 (16%), Positives = 125/331 (37%), Gaps = 18/331 (5%)

Query: 31  FAPVLSALIIGFTSWPI-----YSSFISKKEESSTFLAVIATVSVMCLFIVPLLF-LFYY 84
             P + A  + +   P+               S  F+ +  T++V   ++VPL++    Y
Sbjct: 2   VIPFIGAFFLAYLFSPLVEVLVKIKIPRWLAISIVFIGIGVTLTVALWYLVPLIWKQLVY 61

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
               +   +  +         +  W+S         ++        +++    +T    +
Sbjct: 62  ARDSIPAGIHWINAE------LLPWISST---FHVQQMEIDTDQMSKAVMDYVQTNYSAD 112

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            I  +    ++ G+ F+    +++ + I  F+F  D   + Q L  L    + A   +I 
Sbjct: 113 SIQAVLLKLAQSGLNFIQIGGTVVLIPIIAFYFLLDWDRMLQNLRRLIPRPYEATTLQIV 172

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
           R    V+ +   G  ++ +  G+V      L G+   + +G++  + ++IP         
Sbjct: 173 RECHSVLGAFVKGQFLVMLLLGVVYAVGLQLIGLEVGLIIGMVAGLASIIPYLGFAVGII 232

Query: 265 VSIYLLI---KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
            ++   +     +  +   + +   I   +    L+PFL+G  I L  +   F ++ G +
Sbjct: 233 AAVIASLFQFGMDWTHLLLVGVVFMIGQAVEGYILQPFLLGDKIGLSPVAVVFAVLAGAQ 292

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             G LG+ I   + A+I V+ K      + +
Sbjct: 293 LAGFLGMLIALPVAAVIVVLLKHLRENYERS 323


>gi|91205420|ref|YP_537775.1| permease PerM-like protein [Rickettsia bellii RML369-C]
 gi|91068964|gb|ABE04686.1| Permease PerM-like protein [Rickettsia bellii RML369-C]
          Length = 351

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/352 (14%), Positives = 121/352 (34%), Gaps = 11/352 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N   I   + + I +     +     P   A II +   P      SK + S+   +++
Sbjct: 1   MNKTAIFWLLFIGIFISGFMLISEAIRPFFIAFIISYLLQPAIEFVASKFKLSNKISSIV 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + +F   L  L          +  +V     +      +          ++++  
Sbjct: 61  VYLIFLSIFFTALTLLV-------PVIYGQVSTFVNNIPKYKDYFQTEILPPIMTKIYAV 113

Query: 126 HLSHPQSLKILSETFLKT--NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
             +    ++     F+ +    +  +      + +I ++  +  + + I LF+F RD   
Sbjct: 114 EPNIADKIRDSLSNFINSIFTILGSLANNFWHYTLITINIFVLFLLIPIILFYFLRDWTR 173

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           I + + SL           I   +  ++ +   G   I +   +    ++ + G+   + 
Sbjct: 174 IIENMKSLLPLKSRHKILGILSSINSLLAAYIRGQLNICLLLSIYYSISFSIIGIDLALL 233

Query: 244 LGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           LG++T  + +IP        F  ++I  L  G       + +   I        L P ++
Sbjct: 234 LGILTGFLVIIPFIGTFISCFLTLTIGYLTFGATTQLFYIMVVYIIGNICESYILTPKII 293

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G  I L  L   F +       G +G+F    +  +  ++    I   K ++
Sbjct: 294 GDKIGLHPLWIIFSIFACGSLFGFIGIFFAIPIAGVTKILLFNIIKFYKSSR 345


>gi|229541941|ref|ZP_04431001.1| protein of unknown function UPF0118 [Bacillus coagulans 36D1]
 gi|229326361|gb|EEN92036.1| protein of unknown function UPF0118 [Bacillus coagulans 36D1]
          Length = 341

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/355 (14%), Positives = 111/355 (31%), Gaps = 25/355 (7%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           ++   +G+ R +I  +I + LYFL+     +L   I  +    +                
Sbjct: 7   SLFQKRGVRRVLIFVLITLILYFLRSMMDLMLLTFIFSYLVNRLQKIVTRWFPIKRRLAV 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           +I  + ++    + ++  F   + E+ +LV ++                           
Sbjct: 67  LIVYILILGGLTLGVIKYFPILVNEITQLVMQISDFYTKP-------------------- 106

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +H      +    +     +           +        + +   II   FF  +   
Sbjct: 107 -QHNEVLNYIVKNIQEKKIVDYAQKGVSILFDYFTSISKVSIQVFMAIILSLFFLLEKER 165

Query: 184 ISQQLDSLGEHLFPAYWKKISR---IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           I +      +    A++ +I                   IIA+   ++     W+ G P 
Sbjct: 166 IIRFTKQFKKSKLAAFYDEIEYFGVKFVGTFGKVIEAQFIIAVVNSVLTTIGLWILGFPQ 225

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
              L ++   + +IP  G  IS   + I     G       + +   I   +    L P 
Sbjct: 226 LFGLAILVFALGLIPVAGVFISLIPLCIIAYSIGGGMKVLYVLILIVIVHAVEAYVLNPQ 285

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L+     +P   TF  L+      G+ GL +G  ++     + + +  + +  K+
Sbjct: 286 LMSSKTNMPVFYTFLILIFCEHFFGVWGLILGIPIVMFFLDVLEVTGRSTEPKKK 340


>gi|148549257|ref|YP_001269359.1| hypothetical protein Pput_4051 [Pseudomonas putida F1]
 gi|148513315|gb|ABQ80175.1| protein of unknown function UPF0118 [Pseudomonas putida F1]
          Length = 354

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/342 (14%), Positives = 123/342 (35%), Gaps = 14/342 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             +I V LY L     P L  +++ + + P+           +          V+ +F +
Sbjct: 10  ALLIAVLLYSLHNILTPFLVGIMLAYLADPLVDRLERLGLSRTW--------GVVVVFGL 61

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK---HLSHPQSL 133
             L L    ++ +  L  ++V   +    +  WL  +        L              
Sbjct: 62  FTLLLLALLLVLVPMLAKQLVRLYELAPQMLDWLEHVALPWVQGRLGLADGFWKFDKIKA 121

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            I +     T+ +  +   A+   +  + +  +++ + +  F+  RD   +  +L  L  
Sbjct: 122 AIGAHMGQTTDIVGMLLSQATASSLALVGWLANMVLIPVVGFYLLRDWDLMMGKLRGLLP 181

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                    ++    +V+ +   G  ++ +  G++  +   L G+   + +G++  + A+
Sbjct: 182 RQREPQVMGLAGECHEVLGAFVRGQLMVMLALGVIYSAGLMLVGLELGLLIGMLAGLAAI 241

Query: 254 IPGGAPISFTAVSI---YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +P    I     ++        G+++    +     +   +    L P LVG  I L  +
Sbjct: 242 VPYMGFIIGIGAALVAGLFQFGGDLYPMLGIVAVFMVGQALEGMVLTPLLVGDRIGLHPV 301

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              F ++ G    G  G+ +   + A+I V+ +      KE+
Sbjct: 302 AVIFAILAGGELFGFTGVLLALPVAAVIMVLLRHVHALYKES 343


>gi|326332948|ref|ZP_08199205.1| putative permease [Nocardioidaceae bacterium Broad-1]
 gi|325949306|gb|EGD41389.1| putative permease [Nocardioidaceae bacterium Broad-1]
          Length = 400

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/305 (13%), Positives = 106/305 (34%), Gaps = 16/305 (5%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
           F+ ++  +  +  +   + V+    +  + L      ++ ++ + V          P W+
Sbjct: 110 FLQRRGFARPWAVLTVILGVLGALALFFVALVPVISDQVAKISANV----------PDWI 159

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
            ++      ++   +     Q L  + E     + +      A   G+  ++  ++   +
Sbjct: 160 EEL----QRNQRIQQLNEDYQILDKVQEYVASGDFVSSAFGGALGVGLAVINVLVTAFIV 215

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           I+   +F          +  L          K+   V   I     G  I+A+  GL   
Sbjct: 216 IVLTLYFIAAYDQTKNAIYRLAPASRRDRVSKLGDRVFDGIGGYVSGAFIVALCAGLSTL 275

Query: 231 SAYWLAGV-PSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
              ++ G+    VAL  +  I  +IP  GA I    V        ++       ++    
Sbjct: 276 VLLFVIGMGEYAVALAFVVMITDVIPMIGATIGAVIVCAITFATTDVKTGLIAVVFYIAY 335

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
               +  + P ++   + +P + T    + G   +G++G  +     A I ++ +E  + 
Sbjct: 336 QQFENYVVYPRVMSRSVDIPGVVTVIAALIGASLLGVVGALLAIPTAAAILMLIREVYVR 395

Query: 349 IKENK 353
            ++ +
Sbjct: 396 AQDER 400


>gi|311069412|ref|YP_003974335.1| putative permease [Bacillus atrophaeus 1942]
 gi|310869929|gb|ADP33404.1| putative permease [Bacillus atrophaeus 1942]
          Length = 371

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 58/346 (16%), Positives = 112/346 (32%), Gaps = 16/346 (4%)

Query: 12  MRWMIMFII----LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            R + +F I    + ++Y+      P L ALI+     P             T   ++  
Sbjct: 10  FRTLFVFTISTGSIAAVYYSFPLIYPFLIALILSSAIHPFVEYLDRLTSLPRTLNVILVL 69

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
              + + +  L  L    +     L   +       I     L       +  EL     
Sbjct: 70  AFFLLITVGALTLLVAEIVSGTAYLAKTLPPHLNTFIIFCEKLFTTHIQPFYHELTVLFN 129

Query: 128 SHPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
               + +    T ++  G          +  I     +   +  +     IF ++A FF 
Sbjct: 130 GLETNQQASIVTQIQALGDSAAKNAGLILSHILEMIPKIFALLPNTAAVFIFSLLATFFI 189

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            +D   +   L S+      A  K +   + K +         +     +++    ++  
Sbjct: 190 TKDWHKLKALLLSILPERISANGKAVGSELKKAMAGFVKAQAALVFLTMIIVCIGLFILK 249

Query: 238 VPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           V     +  +  ++ ++P  G    F    +YL I G +  A  + +   I L I  +  
Sbjct: 250 VEHPATIAFLIGLVDLLPYLGTGSVFVPWILYLSITGQLPLAIGIGILYLIVL-IQRQLT 308

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            P L+   I +  L T   L  G +  G LGL  GP ++  I  + 
Sbjct: 309 EPKLLSKSIGIDPLATLIALFAGFKLFGFLGLIAGPAILVFIQALL 354


>gi|291485147|dbj|BAI86222.1| hypothetical protein BSNT_03979 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 279

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 106/284 (37%), Gaps = 7/284 (2%)

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           M ++++    + +     +  L+ ++   +++        + +        +       P
Sbjct: 1   MVIYVLFFGGIGWALYKGVPVLIVQLTDLSENIPMFAETYNGL-----LLHVHNHTDDWP 55

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGM--IFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             +    +  ++     F              LDY L    +   +F+  +D   + + +
Sbjct: 56  DGMHHRIDKMIRQTETFFAGTIEGAISGIRNVLDYFLIAATIPFLVFYMVKDIELMKKTV 115

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L    +        R V   +     G  ++ +  G++ G ++W+ G+P  + LG+I+
Sbjct: 116 WYLTPKSWRKRGSAFLRDVDDSLGDYIRGQLLVCLILGVIAGISFWVFGLPYPLILGLIS 175

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            +  +IP   P      ++ + +  ++     + +   I  F+    L PF+VG  +K+ 
Sbjct: 176 GVTNVIPYFGPFIGAVPALLIAMTISVKAVLVVVITVFILQFMEGNILSPFIVGRSLKMH 235

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            +     L+ G    G++G+ +     A++ V+    +    E+
Sbjct: 236 PVVIMLALLAGGELAGIVGMILAVPATAVLKVMMIHFLRMRTEH 279


>gi|126699868|ref|YP_001088765.1| hypothetical protein CD2250 [Clostridium difficile 630]
 gi|254975843|ref|ZP_05272315.1| hypothetical protein CdifQC_11049 [Clostridium difficile QCD-66c26]
 gi|255093230|ref|ZP_05322708.1| hypothetical protein CdifC_11329 [Clostridium difficile CIP 107932]
 gi|255101394|ref|ZP_05330371.1| hypothetical protein CdifQCD-6_11344 [Clostridium difficile
           QCD-63q42]
 gi|255307268|ref|ZP_05351439.1| hypothetical protein CdifA_11807 [Clostridium difficile ATCC 43255]
 gi|255314972|ref|ZP_05356555.1| hypothetical protein CdifQCD-7_11507 [Clostridium difficile
           QCD-76w55]
 gi|255517647|ref|ZP_05385323.1| hypothetical protein CdifQCD-_11096 [Clostridium difficile
           QCD-97b34]
 gi|260683843|ref|YP_003215128.1| hypothetical protein CD196_2107 [Clostridium difficile CD196]
 gi|260687503|ref|YP_003218637.1| hypothetical protein CDR20291_2150 [Clostridium difficile R20291]
 gi|115251305|emb|CAJ69136.1| putative membrane protein [Clostridium difficile]
 gi|260210006|emb|CBA64041.1| putative membrane protein [Clostridium difficile CD196]
 gi|260213520|emb|CBE05245.1| putative membrane protein [Clostridium difficile R20291]
          Length = 364

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/326 (14%), Positives = 109/326 (33%), Gaps = 2/326 (0%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L     P + A ++ +   P+     SK      +  ++    ++ + I  +LF     
Sbjct: 36  LLMSLLTPFIIAFVLAYIFNPLVKFLESKLNFKRIYSLLLTYGVLIVILISFILFTVPSI 95

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +  + +LV+++             L      +  + L          +   S   + + G
Sbjct: 96  VNSLADLVAQIPTYIDKTEQFLFDLGKSLQSVDPNTLKEYGDKIMSVMPKFSNLLIGSLG 155

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              I       G   + + L  I     L    +      + +       +  +  ++ +
Sbjct: 156 G--IFSTTFSVGKFIVQFLLGFIICFYILLEKEKFLLFTKKVVYISLGKKYGDFIIELCQ 213

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   I   F G  + +   G++ G   +       +  G +  +M M+P   P+   A 
Sbjct: 214 SLNLNIGKYFTGKILDSFIVGVLSGIGLYFLKSEYALLFGTLMGVMNMVPYFGPVIGMAP 273

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            + + +  N   A    ++  I   +    + P +VGG + L    T   +  G    G+
Sbjct: 274 VVIINLFSNPTIALTSLIYLIIIQQVEVTFIEPKIVGGQLGLSPFFTILAVTVGGGFFGI 333

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKE 351
            G+ +   +M +I + + E +    +
Sbjct: 334 PGMILSAPVMGVIKIYFCEFVNRRHD 359


>gi|315103029|gb|EFT75005.1| conserved hypothetical protein [Propionibacterium acnes HL050PA2]
          Length = 386

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 61/329 (18%), Positives = 124/329 (37%), Gaps = 14/329 (4%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            PV  AL++    WP+ +   S+        + I  + ++ L       +     L+ ++
Sbjct: 64  VPVAVALMLTAAMWPLANWL-SRHHIHRGIASGICLLLLVILVGGVFALVGAQIALQWRQ 122

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L  + V + +  +   +WL+  P     ++L T  +   ++    S+          I  
Sbjct: 123 LGDQSVASFKQAL---QWLAKSPLHTNEAQL-THLMQKAEAAMAGSQ--------GRIAS 170

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
            A+  G     +   ++  + A FFF  +G  ++++   L      A     ++     +
Sbjct: 171 TAAAAGSQIGRFGAGLVMALFATFFFVYEGDKLAEKSAVLIPREHRAAILDAAKRGWVAL 230

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLL 270
            +      I+A  +GL  G    + G    VA+G +T I+A +P  GA  +       +L
Sbjct: 231 VAYVRAAVIVAFVDGLGAGIGAAIIGSSMSVAIGALTFILAFVPIVGALTAGVVAVGVVL 290

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +    F A  + +     + I    L+PFL+G  + +  L    G+  G    G++G   
Sbjct: 291 VTLGFFKAFIMLIVFVAVMQIEGHVLQPFLLGKAVSIHPLIVLLGIAVGAIISGIVGALF 350

Query: 331 GPVLMALIAVIWKESIMAIKENKEKISSN 359
              ++A      K        N+   S +
Sbjct: 351 AIPIVAFGVAFIKALNPETPANEVPPSHD 379


>gi|258544125|ref|ZP_05704359.1| GNAT family acetyltransferase [Cardiobacterium hominis ATCC 15826]
 gi|258520633|gb|EEV89492.1| GNAT family acetyltransferase [Cardiobacterium hominis ATCC 15826]
          Length = 375

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/317 (13%), Positives = 101/317 (31%), Gaps = 7/317 (2%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
                P   A ++ +   P+       +   +T +  +     +   ++ L+ +   G  
Sbjct: 24  APVLTPFFLATLLAYLGDPLVDRLQRWRLSRTTAVVTVFCGIFLFFALIVLVVIPAIGGQ 83

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
             + +                 L+ +             ++  +     S T LK     
Sbjct: 84  IDRVVGKLPNYGQWLQQSALPRLAALFDITPGEFRIDDIIAAIKDNLGSSATLLKNVLAK 143

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
                        + +   ++ + +  F+  RD  ++  +   L           + R  
Sbjct: 144 VTGS-----ANWIISFVSYLVLVPVITFYMLRDWDAMVAKTAELVPRKAIGTVTLLVRRS 198

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS--FTAV 265
            +V+     G  ++  G GL+        G+   +A+G+   +++ +P    I     A 
Sbjct: 199 DEVLGGFLRGQLLVMSGLGLIYAIGLTALGLDMAIAIGIFAGLVSFVPYLGLIVGMALAG 258

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            + LL   ++ +   +     I   I    L P  VG  I L  +   F ++ G +  G 
Sbjct: 259 GMALLQFQDVSHLVGVVAVFCIAQAIEGMVLTPKFVGDRIGLHPVAVLFAVLAGGQLFGF 318

Query: 326 LGLFIGPVLMALIAVIW 342
           +G+ +     A+I V  
Sbjct: 319 MGVLLALPAAAVINVFL 335


>gi|323357214|ref|YP_004223610.1| permease [Microbacterium testaceum StLB037]
 gi|323273585|dbj|BAJ73730.1| predicted permease [Microbacterium testaceum StLB037]
          Length = 392

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 57/338 (16%), Positives = 118/338 (34%), Gaps = 16/338 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q I+  +++  ++  +  +     P++ ALI      P+      K       +A + T+
Sbjct: 42  QIIVVVLLLAGLIWGIQQVTLVIIPLVLALIFASAFGPVTMWLRRK--GVPAVIATLLTL 99

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + + +  L +L    ++   + +S    A Q       W   +P  +   +       
Sbjct: 100 LAVVVVLAGLGWLVVNSVINRWDYLS--SQAVQGFQKAQDWYHTLPFAVPQEQ------- 150

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               +    E              A+        +    + M++ LFFF +DG  + + +
Sbjct: 151 ----VNEAIEGIKTFVTSAQFGTAAATSVGAIASFVTGFVLMVVILFFFLKDGPRMWEFV 206

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                       ++I      V+ S   G   +A  + + +     +  VP  + L V+ 
Sbjct: 207 LRPFHGSHYDRARRIGDKTVTVLGSYMRGTASVAAVDAIGIYIGLLILQVPLALPLAVLV 266

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++A IP  GA  +    ++  L+      A  +     +   +    L+P L+G  +KL
Sbjct: 267 FLLAFIPIVGAVTAGILAALVALVTNGPIVALIVVGVVVLVNQLEGNFLQPVLMGRTMKL 326

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
                   L GG    G+LG  +   L A++  I    
Sbjct: 327 HSFVVLVVLAGGTAIGGILGTLLAVPLTAVVWGIITVW 364


>gi|307544883|ref|YP_003897362.1| hypothetical protein HELO_2293 [Halomonas elongata DSM 2581]
 gi|307216907|emb|CBV42177.1| conserved hypothetical protein [Halomonas elongata DSM 2581]
          Length = 359

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/338 (13%), Positives = 122/338 (36%), Gaps = 16/338 (4%)

Query: 14  WMIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           W+   +  + L+FL   +    P   ++++ +   P+      K       ++++  +  
Sbjct: 6   WIAAVLAALGLWFLISIEPVLMPFFVSMVLAYLGDPLADRLEDKGLSRRLSVSLVFLLL- 64

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
                   L +    +L +  L  ++    +    +  W+         S       +  
Sbjct: 65  -------TLVIVLSLLLVIPILGRQIGQLIESLPAILGWVQSTVVPRIQSMTGMDLSTDF 117

Query: 131 QSLKILSETFLKTNGI--DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             ++       K  G     +    S+ G+  +    ++  + +  F+   D   +  ++
Sbjct: 118 DQMRETLVDNWKETGTFAATLLAQVSKSGLALVALVGNLALIPVVTFYLLLDWDDLVAKV 177

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                  +     +++    +V+ +   G  I+ +  G++      L GV   + +G+++
Sbjct: 178 RGSLPRRWEPTVVRLAGECDEVLSAFLRGQLIVMLCLGIIYAIGLTLLGVKFGLLIGLLS 237

Query: 249 AIMAMIPGGAPISFTAVSIYLLI---KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            + +++P    I   +VS  +      G I+    +        FI    L+P L+G  I
Sbjct: 238 GLASIVPYLGVIVGISVSGLVAFFQSGGEIWMLLGVAAVFGFGQFIESIVLQPKLLGDKI 297

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L  +   F ++ G +  G  G+ +   + A++ V+ +
Sbjct: 298 GLHPVAVIFAVLAGGQLFGFTGVLVALPVAAMVMVVLR 335


>gi|157371749|ref|YP_001479738.1| hypothetical protein Spro_3512 [Serratia proteamaculans 568]
 gi|157323513|gb|ABV42610.1| protein of unknown function UPF0118 [Serratia proteamaculans 568]
          Length = 356

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 120/357 (33%), Gaps = 16/357 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +PQ I   +I+    + LYFL G   P+L A+++ +   WP     + +   S  
Sbjct: 10  RRRFTDPQAIALLVILVAGFLILYFLHGILTPLLVAIVLAYLLEWPTAR--LQRIGCSRN 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWA 119
           + A +  +    + ++ +  +      +   L++ +  + NQ            P  + A
Sbjct: 68  WAASMVMIMFAGIAMLLVFVVAPTAWQQGINLMTDLPGMLNQFYNFAATLPKRYPALVDA 127

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
             +     +    L  + E+ +K +    +           L   + +I + + +FF  +
Sbjct: 128 GIIDMMAENLRGRLSGMGESVVKFSLASLV---------GLLTLAIYLILVPMMMFFLLK 178

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D   +   +  +         +     + + I +   G  +  +  G+     + +  + 
Sbjct: 179 DKEQMLNAVRRVLPRNRGLAGQVWIE-MNQQITNYIRGKVLEMVIVGVATYLVFVVLDMR 237

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLR 297
             + L V+     +IP    +  T   +   +   G   +   L +   +   +    L 
Sbjct: 238 YSLLLAVLVGFSVLIPYIGAVLVTIPVVVVAMFQWGVGADFWTLIVAYLVVQGLDGNLLV 297

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           P L    + L  L     ++      G  G+F    L  L+  +       ++   E
Sbjct: 298 PILFSEAVNLHPLVIILSVIIFGGLWGFWGVFFAIPLATLVKAVIHAWPDELRVETE 354


>gi|309803069|ref|ZP_07697168.1| putative membrane protein [Lactobacillus iners LactinV 11V1-d]
 gi|312872535|ref|ZP_07732603.1| putative membrane protein [Lactobacillus iners LEAF 2062A-h1]
 gi|312874917|ref|ZP_07734936.1| putative membrane protein [Lactobacillus iners LEAF 2053A-b]
 gi|308164850|gb|EFO67098.1| putative membrane protein [Lactobacillus iners LactinV 11V1-d]
 gi|311089662|gb|EFQ48087.1| putative membrane protein [Lactobacillus iners LEAF 2053A-b]
 gi|311091897|gb|EFQ50273.1| putative membrane protein [Lactobacillus iners LEAF 2062A-h1]
          Length = 380

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 61/337 (18%), Positives = 120/337 (35%), Gaps = 4/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F++   L F+      V+ A +  +   PI      K         +   + V+ + I
Sbjct: 43  IAFLLTPVLTFVNAIMPAVILAGVQYYLMNPIVDCLEQKYRIPRIVTILALFIVVLIILI 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + +  L      + K L+         G    R L   P            +S+ QS+  
Sbjct: 103 LIINTLLPVIEAQTKSLIDHWPSYWDSGQEALRHLLHDPRLDGIRSDLNDAVSNAQSILF 162

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +         +           +     ++++     LFF  +DG  I+  L S     
Sbjct: 163 NT----GKASFNLFLENLFGAVNVISMLIVTLLTAPFILFFMLKDGKKINPYLTSFMPPR 218

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
               + K+   +   + S   G  I+A   G++    Y   G+   + L ++ A + +IP
Sbjct: 219 LQNVFSKLLHDMNIAVSSYVRGQLIVAFWVGVMFAVGYTTIGLKYGLTLAILAACLNLIP 278

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
               +     +I + I  +      +F+   IE  I  + + P ++G  +K+  + T   
Sbjct: 279 YFGTLISLIPAIIIGILDSPVMLLKIFVVFFIEQLIEGRFISPLVMGSKMKMNPVTTILL 338

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+G     GLLG+     + A I +I  +     ++N
Sbjct: 339 LIGANSVAGLLGVIFAIPIYAGIKIIVVQVFDYYRKN 375


>gi|254513811|ref|ZP_05125872.1| permease [gamma proteobacterium NOR5-3]
 gi|219676054|gb|EED32419.1| permease [gamma proteobacterium NOR5-3]
          Length = 379

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 58/324 (17%), Positives = 109/324 (33%), Gaps = 17/324 (5%)

Query: 11  IMRWMIMFIILVS----LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           I RW ++F +        Y L+    P +   ++G+   P+      +   S TF  ++ 
Sbjct: 16  INRWPLVFAVFAGMGLLFYLLQPILLPFVLGALMGYLGDPLVDRVEER-GGSRTFGVILV 74

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +    L ++ + F     + ++  LV ++ L       V  WL D+      S      
Sbjct: 75  FLFFTTLSLLAMFFAVPVLLQQLDGLVGRIPL-------VYAWLRDVAVPWLQSRTLVTG 127

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL---SIIFMIIALFFFYRDGFS 183
              PQ            +         S      L   L   +I  + +  F+  RD   
Sbjct: 128 ARLPQIDWSAELLQNWQSLGKVTATTVSSLTGSGLGLLLGLANIALVPVVAFYLMRDWDD 187

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           I+ ++  L    + A   ++     +V+ +   G  I+    G +     W  G+   + 
Sbjct: 188 IAGRILHLMPKAWQAGTLQMVSEADEVVGAFIRGQFIVMCALGALYAVGLWFVGLQLALL 247

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           LG I  + +++P    I   + S+               +     +   I    L P LV
Sbjct: 248 LGFIAGLASIVPYLGFIVGISASLAAAWLQFHEPLPLLYVAAVFGVGQLIESMVLTPVLV 307

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGL 325
           G  I L  +   F L+ G +  G 
Sbjct: 308 GNRIGLHPVVVIFALMAGGQLAGF 331


>gi|210633874|ref|ZP_03297889.1| hypothetical protein COLSTE_01806 [Collinsella stercoris DSM 13279]
 gi|210159043|gb|EEA90014.1| hypothetical protein COLSTE_01806 [Collinsella stercoris DSM 13279]
          Length = 455

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/308 (12%), Positives = 111/308 (36%), Gaps = 14/308 (4%)

Query: 41  GFTSWPIYSSFISKKEESSTFLAVIATVSVM-----CLFIVPLLFL-FYYGMLEMKELVS 94
            F + PI + F   +        V   V ++        ++P++       + +    ++
Sbjct: 53  AFVASPIVNWFERHRVPRGAGALVGLVVVIVGLVLLFALVIPMVTAQLIDLLRDAPSKLA 112

Query: 95  KVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFAS 154
            +             +  +   +    ++T                ++   +  +   AS
Sbjct: 113 ALGAWVVRMENEYAVIEHLNDVVQLDSIFTAAQDITNQALSGLLAAVRDGIVPMVNNIAS 172

Query: 155 RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRST 214
              ++FL + L+        F+   D   I+ ++  +  H     ++ +  +V + +   
Sbjct: 173 TVFIVFLGFVLA--------FWLACDYPRINDEICRILPHDKADDYRLMVAVVSRSVGGY 224

Query: 215 FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGN 274
                I ++ +G +    + + G P   A+GV++ ++ +IP   P     ++  + +  +
Sbjct: 225 LRSTVINSVIQGFLAFVGFAIVGHPYAAAMGVLSGVLNIIPVVGPSISAIIATLIALVYS 284

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
              A    +   +   I D  + P +    +++  + +   LV G    G +G+ +   L
Sbjct: 285 PMMAVWTMIMAMLSQNITDNVIAPKINQSTMQVHPVLSLTALVVGSTFGGAVGMIVALPL 344

Query: 335 MALIAVIW 342
           +A+I  ++
Sbjct: 345 VAVIKSLF 352


>gi|228992073|ref|ZP_04152009.1| hypothetical protein bpmyx0001_28180 [Bacillus pseudomycoides DSM
           12442]
 gi|228767802|gb|EEM16429.1| hypothetical protein bpmyx0001_28180 [Bacillus pseudomycoides DSM
           12442]
          Length = 376

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 56/326 (17%), Positives = 121/326 (37%), Gaps = 5/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + FLK  F PVL A ++ +   P + S + +K  S         + V+ LF+
Sbjct: 44  ISFVFTPFIVFLKTIFFPVLLAGVLFYILHP-FVSLLERKGVSRIISIASIYILVIGLFV 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             ++ +      ++  L+  +           R      G           L+      +
Sbjct: 103 FLVVTVIPIIKDQVNALIDNLPYFGHEVERAARRF----GESNIIGKIQDSLNIDVGSIV 158

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   TN +  +    + F     +  L+ + +   LF+  +DG  + +         
Sbjct: 159 KDSTINFTNSLSSVTGNVTGFLSTLTEVVLTFVMVPFILFYLLKDGEQLPRYFLRFIPEQ 218

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
             +  K I   +   I S   G  I+++  G++L   Y + G+   V L V+  I+ ++P
Sbjct: 219 RRSSAKLILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAVLAMIVNVVP 278

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI     ++ +    +      + +   I      K + P ++G  + +  +   F 
Sbjct: 279 YVGPIIAILPALIIAFIDSPAMILKVIIVMMIVQLAEGKFISPQVMGKKLDIHPITIIFI 338

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++      G++G+ +     A++ V+
Sbjct: 339 ILTAGNLFGIMGVILAIPGYAILKVL 364


>gi|323484140|ref|ZP_08089510.1| sporulation integral membrane protein YtvI [Clostridium symbiosum
           WAL-14163]
 gi|323693215|ref|ZP_08107433.1| hypothetical protein HMPREF9475_02296 [Clostridium symbiosum
           WAL-14673]
 gi|323402582|gb|EGA94910.1| sporulation integral membrane protein YtvI [Clostridium symbiosum
           WAL-14163]
 gi|323502698|gb|EGB18542.1| hypothetical protein HMPREF9475_02296 [Clostridium symbiosum
           WAL-14673]
          Length = 374

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 4/320 (1%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L GFF P +   II   + P+        +      +++  V V+ L I  L     +  
Sbjct: 31  LLGFFMPFVIGWIIALIANPLVKFLERHLKLVRRHGSMVIIVGVLILVIGLLYLAVVWTY 90

Query: 87  LEMKELVSKVVLANQHGIP--VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            EM   V  + L   + +        +      +  +   K L         +   L + 
Sbjct: 91  TEMAGFVKDLPLLYDNALSEITEAIENSRKLVTYLPDSLQKPLLEISDNLGGTIGALFSK 150

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
                   A        +  ++ + MI+A + F  +   I + L ++       Y   + 
Sbjct: 151 AAAPTVEIAGNVAKGIPNVMVNTVIMILASYLFLVERDKILRGLKAVLPPFVFRYVDYLK 210

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
           +    +I   FL    I      +L +   + GV   + L V+ A++  +P  G      
Sbjct: 211 KDARGLIGGYFLAQFRIMFVVAAILAAGLMILGVKYSLVLAVLIAVLDFLPIFGTGTVLL 270

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++  L       A  L L   I   +V + ++P +VG  + LP L T F L  G +  
Sbjct: 271 PWAVVKLFSAEYPYAAGLILIY-ITTQVVRQIIQPKIVGDSMGLPPLITLFLLYMGYKVK 329

Query: 324 GLLGLFIGPVLMALIAVIWK 343
           G+ G+ +   +  +    +K
Sbjct: 330 GIAGMILAVPIGLIFINFYK 349


>gi|319647524|ref|ZP_08001744.1| hypothetical protein HMPREF1012_02783 [Bacillus sp. BT1B_CT2]
 gi|317390372|gb|EFV71179.1| hypothetical protein HMPREF1012_02783 [Bacillus sp. BT1B_CT2]
          Length = 353

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/342 (14%), Positives = 121/342 (35%), Gaps = 5/342 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           FI    +  ++    PV+   ++ +   PI   F+ +K     +  ++  + ++ L  + 
Sbjct: 14  FIFTPFIVLVETIALPVVLTGVVYYLLNPIVD-FLERKNVKRIYSILLLYIVIIGLITIS 72

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           ++ +      ++  LV            V   +  + G  + +++      +   L    
Sbjct: 73  IVSVIPLLREQITSLVDNFPRYVHI---VEDQIKQLIGSQFFNQVQQTMNINLTDLASKL 129

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
                T          +  G +  +  +SI+ +   LF+  +DG  +   +  L      
Sbjct: 130 SDQATTILNSTFTGVGTFIGAVT-EVVISIVTVPFILFYLLKDGKKLPLFILKLIPVRLR 188

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   +   + S   G  I++   G +L   Y + G+     L ++ A  +++P  
Sbjct: 189 EQTYVMMSEMNHRLSSYIRGQIIVSFCIGCLLFIGYMIIGLDYASLLALVAACTSIVPYL 248

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P      +I + +  + F    L +   +      K + P ++G  + +  +   F L+
Sbjct: 249 GPTIAITPAIIIALVTSPFMLVKLIIVWTVVQLFEGKFISPQIMGKNLHIHPVTIIFVLL 308

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              +  G++G+ +     A+I V+        K+       N
Sbjct: 309 TAAKLFGVIGVILAIPGYAVIKVVVTHLFEWFKQRSHLYEKN 350


>gi|23097847|ref|NP_691313.1| hypothetical protein OB0392 [Oceanobacillus iheyensis HTE831]
 gi|22776071|dbj|BAC12348.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 383

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/329 (14%), Positives = 121/329 (36%), Gaps = 11/329 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    +  +K    P++ A +  +   PI +    KK +           S+  L++
Sbjct: 40  ISFVFTPFVVLIKTVILPLILAAVAFYLLNPIVNYLEKKKIKR--------IYSIFGLYV 91

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + +  L    +  +  L  +++   ++  P    + D+   +  S++  +          
Sbjct: 92  IIIGILTVIIVSVIPVLREQIMSLIENLPPFISDIEDMVEDLIGSQVLNQSQILSNLNIS 151

Query: 136 LSETFLKTNGIDFIPRFASRFGMIF---LDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                +    +D +    S  G +     +  L+I+ +   LF+  +DG  +        
Sbjct: 152 SFVEQISNKLLDLVDTAFSNIGGVIGTVTEIVLAIVTLPFILFYLLKDGDKLPGYFLKFL 211

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
              F      + + +   I +   G  I+A   G+++   + +  +     L +I A   
Sbjct: 212 PVSFRDQTYTVLKEMNNQISAYIRGQIIVAFCIGVLMYIGFMIIQLDYAPVLALIAAFTT 271

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++P   P      ++ + I  + F    L     I   +  K + P ++G  +++  +  
Sbjct: 272 VVPYIGPAIAITPALIVAIVTSPFMLIKLIAVWTIVQLVEGKFISPQIMGRNLRVHPITI 331

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            F ++      G++G+ +     A++ VI
Sbjct: 332 IFIILTAGNLFGVVGILLAIPGYAILKVI 360


>gi|315093474|gb|EFT65450.1| conserved hypothetical protein [Propionibacterium acnes HL060PA1]
          Length = 386

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 61/329 (18%), Positives = 124/329 (37%), Gaps = 14/329 (4%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            PV  AL++    WP+ +   S+        + I  + ++ L       +     L+ ++
Sbjct: 64  VPVAVALMLTAAMWPLANWL-SRHHIHRGIASGICLLLLVILVGGVFTLVGAQIALQWRQ 122

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L  + V + +  +   +WL+  P     ++L T  +   ++    S+          I  
Sbjct: 123 LGDQSVASFKQAL---QWLAKSPLHTNEAQL-THLMQKAEAAMAGSQ--------GRIAS 170

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
            A+  G     +   ++  + A FFF  +G  ++++   L      A     ++     +
Sbjct: 171 TAAAAGSQIGRFGAGLVMALFATFFFVYEGDKLAEKSAVLIPREHRAAILDAAKRGWVAL 230

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLL 270
            +      I+A  +GL  G    + G    VA+G +T I+A +P  GA  +       +L
Sbjct: 231 VAYVRAAVIVAFVDGLGAGIGAAIIGSSMSVAIGALTFILAFVPIVGALTAGVVAVGVVL 290

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +    F A  + +     + I    L+PFL+G  + +  L    G+  G    G++G   
Sbjct: 291 VTLGFFKAFIMLIVFVAVMQIEGHVLQPFLLGKAVSIHPLIVLLGIAVGAIISGIVGALF 350

Query: 331 GPVLMALIAVIWKESIMAIKENKEKISSN 359
              ++A      K        N+   S +
Sbjct: 351 AIPIVAFGVAFIKALNPEPPANEVPPSHD 379


>gi|309390041|gb|ADO77921.1| protein of unknown function UPF0118 [Halanaerobium praevalens DSM
           2228]
          Length = 355

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 114/301 (37%), Gaps = 4/301 (1%)

Query: 42  FTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ 101
           +   P+   F+    ++ +   +I+ + ++ +  +   F       + KEL   +  +  
Sbjct: 52  YLMRPL-VRFLEPIVKNKSLSIIISFLVIVAILTIVFYFGGSIIYNQGKELSQNLSGSYS 110

Query: 102 HGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL 161
               +  ++ +I   +               ++    ++L                    
Sbjct: 111 ---YLYNYILEIIESIKQYIDLDNSFLEELQIQEKLFSYLNNLAQKISNYNYMGIFSSIT 167

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
           ++ L I+ +   LF+  +D   +   +  +        +++++  + +++ +      ++
Sbjct: 168 NFGLIILLIPFILFYLLKDDQKLFNNILHIIPENKKEEFEEVASEIDQLLSTFISSQVVV 227

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL 281
           A   GLV+   + +  +P+   L  I  I ++IP   P   +  +I++    ++F    +
Sbjct: 228 AFFLGLVMFFGFLIIQLPNAAVLAFIAMITSLIPIIGPFFGSLPAIFVAATNSLFLFIGV 287

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L   I  ++    +RP + G  +++  L   F ++ GV   G +G      L  ++ ++
Sbjct: 288 ALIILIAQYLEGNLIRPLVQGRRLEIHPLVVLFVVLSGVYLFGFIGALTSVPLYVVLRLL 347

Query: 342 W 342
           +
Sbjct: 348 F 348


>gi|310829602|ref|YP_003961959.1| hypothetical protein ELI_4054 [Eubacterium limosum KIST612]
 gi|308741336|gb|ADO38996.1| hypothetical protein ELI_4054 [Eubacterium limosum KIST612]
          Length = 415

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 113/355 (31%), Gaps = 29/355 (8%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISK----------KEESSTFLAV------------IATV 68
             P++   ++ +  +        K          K +    LAV            +   
Sbjct: 51  LLPIIMGAVLAYFLFRPMRWIEKKAFKYIKGSEKKPKLVRLLAVLVIYVITIIVVILFMY 110

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +   I  ++ L         E+ + ++  +Q G      +  I   + + +      +
Sbjct: 111 ISIPAIIDSVVGLVSSIPTYAAEINTFLINLSQRGGFFKDLVDMIQLDLSSVQNLNAKDT 170

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                  ++     +  +  I   A  F      + +  + +  + F+   D  +I  QL
Sbjct: 171 MDFIFGNMN---FNSESVKQIGNIAVGFAKGTTSFLIGFVAVFFSGFYLMLDKENIESQL 227

Query: 189 DSLGEHLFPAYWKK----ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             L   +             R +  V    F G  + +   GL+      +  V     +
Sbjct: 228 KRLNRAIMSPKANNGFNWAIRTIDGVFYKYFSGKIMTSALIGLICYIGLLVLRVEYAPLI 287

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            ++  +  +IP   PI      I+L +  +   A  + +W           L P ++G  
Sbjct: 288 ALVVGVTNVIPYFGPIIGAIPGIFLTLLYSPAKALGVAIWILAVQQFDGNVLGPNVLGKI 347

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           ++L      F ++ G    G LG+F+     A+I V   E+++  +  K  +   
Sbjct: 348 VELNPFWVLFCVMVGGSLFGPLGMFVAIPFFAVIKVFVTEALVRWERRKTTVQEE 402


>gi|138896128|ref|YP_001126581.1| hypothetical protein GTNG_2491 [Geobacillus thermodenitrificans
           NG80-2]
 gi|196250080|ref|ZP_03148774.1| protein of unknown function UPF0118 [Geobacillus sp. G11MC16]
 gi|134267641|gb|ABO67836.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|196210264|gb|EDY05029.1| protein of unknown function UPF0118 [Geobacillus sp. G11MC16]
          Length = 353

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 101/322 (31%), Gaps = 15/322 (4%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+     P L A  I +   P+     SK    +  + +I  +            + Y  
Sbjct: 38  FVTTVLTPFLLAAFITYLLHPLVEYIHSKGVPRALAILLIYLLF--------FGSVGYGL 89

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT-- 143
              +  L++++   ++    +           WA  +  +  + P  +    E       
Sbjct: 90  YRGIPVLIAQLRELDERLPSLMNTYRQ-----WARHIHDETSTWPMEVHTRIEAMFVQLE 144

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             +      A      F+      + +   +F+  +D   + + +  +    +       
Sbjct: 145 QVVARAVTMAINAVKSFIGSAAMFLLIPFIVFYMLKDIDVLKKAVWYMTPKRWRGPGIAF 204

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
            + V + +     G   +    GL      WLAG+   + LG +  +  +IP   P+   
Sbjct: 205 LKDVDESLGGYIRGQLFVCAAIGLAASLGLWLAGMDYPLLLGFVIGLTNIIPYFGPLIGA 264

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             +  L    ++     +        F+    L P +VG  + +  L   F L  G    
Sbjct: 265 IPAAILAATISLKMVIIVLALIFALQFLEGNVLSPLIVGKSVHMHPLVIMFALFAGGELA 324

Query: 324 GLLGLFIGPVLMALIAVIWKES 345
           G+ GL +     A++ V     
Sbjct: 325 GVPGLILAVPTAAVLKVALVHW 346


>gi|290957836|ref|YP_003489018.1| integral membrane protein [Streptomyces scabiei 87.22]
 gi|260647362|emb|CBG70467.1| putative integral membrane protein [Streptomyces scabiei 87.22]
          Length = 452

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/308 (14%), Positives = 108/308 (35%), Gaps = 21/308 (6%)

Query: 17  MFIILVSLYFLKGFFAPV-------LSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           + ++  +++ L    + V        +AL++     P  +               +  V 
Sbjct: 118 LLVLAGTVWVLMRIISSVQLLVLSFTTALLVTALLQPTVARLTRHGVPR-GLATALTAVL 176

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              +  +   F+ +  M  + +L ++V         + RWL D P  +  +++     + 
Sbjct: 177 GFVVMGLIGWFVTWQVMENVDDLSNQVQDGIDE---LQRWLLDSPFHVTENQINDIAKNL 233

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            +++   ++T                   + ++    I+  + +  F   DG  I Q + 
Sbjct: 234 REAISDNTDTITSAGLEGV---------TVLVEALTGILLTMFSTLFLLYDGKRIWQWML 284

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L                 + + +   G  I+A+ + + +G   +   VP  V L V   
Sbjct: 285 KLVPSAARPGVADAGPRAWRTLTAYVRGTVIVALIDAIFIGLGIYFLDVPMAVPLAVFIF 344

Query: 250 IMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           + A IP    +   A+++ + L+   +F A    +       I    L+PF++G  +++ 
Sbjct: 345 LFAFIPLVGAVVSGALAVVVALVTQGVFTAVMTLVVVLAVQQIEGHILQPFILGRAVRVH 404

Query: 309 FLPTFFGL 316
            L     +
Sbjct: 405 PLAVVLAV 412


>gi|300781580|ref|ZP_07091434.1| possible permease [Corynebacterium genitalium ATCC 33030]
 gi|300533287|gb|EFK54348.1| possible permease [Corynebacterium genitalium ATCC 33030]
          Length = 540

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/310 (15%), Positives = 99/310 (31%), Gaps = 29/310 (9%)

Query: 12  MRWMIMFIILVSL-YFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +R + +FI++ +L Y +  F     P++ ALI+     P+ +SF+ K        A+++ 
Sbjct: 79  LRMVAIFILIGALAYLVGKFWAGILPIVLALIVCTVLEPV-TSFLRKHGLPGALSALMSM 137

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + + +  +  +    +   + L  +     Q                  +       
Sbjct: 138 LLALAVLVFFVSMILPDIITNSRVLAIQAGQGLQS----------------LALWLQNQD 181

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR-------D 180
           S P S+       +  + I ++   A            +   M+I              D
Sbjct: 182 SLPFSVDAEQINEVVQDSITWVQNRAGAIAGGIFSGISTATSMMITFVVVVVLTFFFLND 241

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G      + S        +  ++   +   +        +++  + + +G   W  GVP 
Sbjct: 242 GPKFLPWVRSATGGRAGLHATELLTRIWNTLCGYIRAQAVVSFIDAVCIGVGLWAVGVPM 301

Query: 241 HVALGVITAIMAMIPGGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
              L VIT +   IP    I   A++ I  L+      A  +         +    L P 
Sbjct: 302 AFTLAVITFMAGFIPLVGAIVAGALAVIIALVSLGFTEALIVLGIVIAVQQLEGNVLSPL 361

Query: 300 LVGGPIKLPF 309
           L    + L  
Sbjct: 362 LQSRAMNLHP 371


>gi|229087153|ref|ZP_04219302.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock3-44]
 gi|228696125|gb|EEL48961.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock3-44]
          Length = 364

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 59/349 (16%), Positives = 128/349 (36%), Gaps = 12/349 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +   I   +L ++ G   P + AL   +   P+ +    K +       +++ +
Sbjct: 3   RLIFVILATIIGFYALLYVSGLIYPFIIALAFAYLINPVVNFLNQKLQFPRALAVLVSLI 62

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V       +   +  +         +L ++   
Sbjct: 63  LVFGAIVGLVTYLVTEAISATTYLLQIVTEKFPTIVQYAQQFALNHIMPLYDDLISQFNH 122

Query: 129 HPQSLKILSETFLKTNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +S +      ++  G +           I    + F          ++F+++A FF  
Sbjct: 123 LGESQQYTITQNIQNLGTEATKQMKELLTAIISGLTNFISALPTTLTVLVFILLATFFIS 182

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   ++ ++  L  +    Y K I   + K +         +     +++     +  V
Sbjct: 183 FDWHKLANKMKQLLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTIIVLIGLLILRV 242

Query: 239 PSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P  + + +IT I+ ++P  G    F    IY+   G+   A  L +   + + +  + + 
Sbjct: 243 PYAITIAIITGIVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVI-VQRQIME 301

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           P ++   I L  LPT   L  G +  G LGL IGPV + L+  + K  +
Sbjct: 302 PKVLSSNIGLDPLPTLIALFVGFKLYGFLGLIIGPVTLVLLNTLHKARV 350


>gi|109898796|ref|YP_662051.1| hypothetical protein Patl_2481 [Pseudoalteromonas atlantica T6c]
 gi|109701077|gb|ABG40997.1| protein of unknown function UPF0118 [Pseudoalteromonas atlantica
           T6c]
          Length = 356

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 60/353 (16%), Positives = 119/353 (33%), Gaps = 14/353 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +M  +++  + V L  L     PVL A +I +   WP+    +S+      F   +
Sbjct: 15  DPDSVMLLIMLIAVSVLLALLGTILMPVLVAAVIAYLLDWPVSQ--LSRSGMRRGFACSV 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
                + L I+  + +      +   L+ ++     H      WL  +P           
Sbjct: 73  VIFGFLTLCILTFIGIVPVVSQQSINLIREMPQIWGHAQV---WLLQLPE----QYPDFV 125

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           HL   Q +       + + G   +    S          + ++ + + +FF  +D   + 
Sbjct: 126 HLGDVQDMLDGVNERIVSLGEQLLSASVSSL-GSLASLLIYLVLVPLMVFFMLKDKDQLL 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L  L         K++   +   I +   G  I  I  G +    + L  +   + LG
Sbjct: 185 DNLSPLLPS-QRRLIKQVGSEMNTQIANYIRGKVIEIIIVGTISAVTFALMDLRYALLLG 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTLRPFLVGG 303
           V+     +IP  GA +    V++  L +  I      L +   +   +    L P L   
Sbjct: 244 VLVGFSVLIPYIGAAVVTIPVAVVALFQWGITPDFWWLMIAYGVIQALDGNVLVPVLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            + L  +     ++      G  G+F    L  L+  +       ++E    I
Sbjct: 304 AVSLHPVYIIIAVLFFGGLWGFWGVFFAIPLATLVKAVINAWKGPLQELPPAI 356


>gi|328949569|ref|YP_004366904.1| protein of unknown function UPF0118 [Marinithermus hydrothermalis
           DSM 14884]
 gi|328449893|gb|AEB10794.1| protein of unknown function UPF0118 [Marinithermus hydrothermalis
           DSM 14884]
          Length = 371

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/346 (13%), Positives = 108/346 (31%), Gaps = 8/346 (2%)

Query: 13  RWMIMFIILVSLYFL----KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL--AVIA 66
           R +   + + +LY L    +  +   + A ++ + + P+       +      +  A   
Sbjct: 21  RVLAALLGVWALYQLLARAQSVWTAFVVAYVLAYLANPLVCWLERFRVRRVLGVVVAYAL 80

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
               +    V +  +        ++L + V    Q    +P  ++          +    
Sbjct: 81  LFLFLGFASVLVAEVVGQLSRFARDLPALVAPLVQWVEGLPDRITRFEVPPELERVLQGA 140

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRF--GMIFLDYCLSIIFMIIALFFFYRDGFSI 184
            +  Q+L       L       +    S        +     +  + +   +   D   I
Sbjct: 141 SASLQALLEGFANTLLEWLRTLLGTGGSLIQGLAGIVGGLFQLFIVFVLTAYMLLDFPRI 200

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            Q L  +    +    + ++  +   +     G  +IA   G V+G   +  GVP   AL
Sbjct: 201 GQSLIQVFPRPYQPLIQDLAAKLDHAVGGYVRGQLLIAALVGTVVGLGLFFLGVPLAAAL 260

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           G I  +  ++P    I     ++ L +           +   +   +      P ++   
Sbjct: 261 GFIAGVFNLVPYLGVIVSIIPALLLALPQGGVAVVGTLVVFILANQLEAHLFSPLILSRA 320

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            +L  +     ++ G    GL G  +     A + VI+ E  +  +
Sbjct: 321 TQLHPVTVILAILAGATLFGLWGAVLAVPFAAFLKVIFSEYYLNSR 366


>gi|325287490|ref|YP_004263280.1| hypothetical protein Celly_2592 [Cellulophaga lytica DSM 7489]
 gi|324322944|gb|ADY30409.1| protein of unknown function UPF0118 [Cellulophaga lytica DSM 7489]
          Length = 362

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 57/343 (16%), Positives = 119/343 (34%), Gaps = 18/343 (5%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + ++   LY +      +  A +      PI      K + ++T   +I    ++ +   
Sbjct: 20  IVLLCFFLYKISSVLVYISIAAVASLIGRPIVLFLRDKLKFNNTLAVIITMFFLIGIVGG 79

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +       + +   L           + + +   +I         +    +      + 
Sbjct: 80  IIALFIPLIIQQGHNLA---------LLDINQLQGNIENLYTEVINYFGVSTTELEENVK 130

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           S  FL      FIP F +    +     + +  ++   FFF +D    S  L  L     
Sbjct: 131 SSNFLTNVDFAFIPNFLNSLVGVLGSLSIGLFSVLFITFFFLKDRKLFSDGLLMLTPQNK 190

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
              +KK    +  ++   F+G+    +   ++      + G+ + + +  + A++ +IP 
Sbjct: 191 EGRFKKSMDTISSLLSRYFVGLVFQILILFVIYTIVLLVVGIENAIVIAFLCALLNLIPY 250

Query: 257 GAPISFTAVSIYLLIKGNIFNA--------TCLFLWGAIELFIVDKTL-RPFLVGGPIKL 307
             PI   A+ + L +  N+  +        T   + G I   +VD    +PF+    +K 
Sbjct: 251 VGPIIGGALMVTLTMSSNLGESFSEVILPKTGYVMIGFIIGQLVDNFFSQPFIFSNSVKS 310

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             L  F  ++ G    G+ G+ I       I VI KE     K
Sbjct: 311 HPLEIFLVIIIGGLLFGITGMIIAVPGYTAIKVILKEFFADNK 353


>gi|78223257|ref|YP_385004.1| hypothetical protein Gmet_2050 [Geobacter metallireducens GS-15]
 gi|78194512|gb|ABB32279.1| protein of unknown function UPF0118 [Geobacter metallireducens
           GS-15]
          Length = 368

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/336 (16%), Positives = 117/336 (34%), Gaps = 4/336 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I+  +++   L   + L   F PVL ALI+ +   P+ S    K+      + ++ T  V
Sbjct: 21  IIVGVLVLAGLFFAWSLSSIFLPVLLALILAYVLNPVVSWLEGKRVPRVVVILLVMTGIV 80

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +        F            ++    AN+    +P  +          +L+ +     
Sbjct: 81  VGFAGAFAFFAGSIQNELAAVQINLPDYANRFYGLIPEKVKVYLQIETPDKLYRQVDRML 140

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
             L+ +S    +         F+S  G I     +      + L++F  D     +    
Sbjct: 141 NELRGISFDIARGAYDFVKKAFSSTLGFILT--VVGYFITPVYLYYFLADLPHFKEGALK 198

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L           +   +  V+ +   G   + +   ++      L G+   +A+G ++ I
Sbjct: 199 LVPERSRETVTGLGDEIDGVLSAFVRGQLSVCVILAVLYSIGLSLIGIDLAIAIGTLSGI 258

Query: 251 MAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           + +IP    I     ++ +  L   ++ +      W  I   I    + P +VG  + L 
Sbjct: 259 LFIIPYVGTIFGIVVSMIMAFLKFHDLLHPLLCLGWFVIVQAIEGALITPAIVGNRVGLH 318

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +     L  G +  G+ G+ +   + A++ V  + 
Sbjct: 319 PVVAIIALFIGGQWFGIFGMLLAVPVAAVLKVFLRH 354


>gi|253989272|ref|YP_003040628.1| permease perm [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253780722|emb|CAQ83884.1| putative permease perm [Photorhabdus asymbiotica]
          Length = 359

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 62/358 (17%), Positives = 128/358 (35%), Gaps = 18/358 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +PQ I  ++I+ +    +YFL G  AP+L A+++ +   WP  +S + K   S T
Sbjct: 10  RRRFTDPQVIALFIILVVGFCIIYFLHGILAPLLVAIVLAYLLEWP--TSMLEKLGCSRT 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               I  +    +  + +L +      +   L+S +          P  L+         
Sbjct: 68  VAVCIVLIIFSGISALVILIVAPTAWQQGLNLLSDI----------PNMLNRFNEYAQTL 117

Query: 121 ELWTKHLSHPQSLKILSETFLK--TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                 L     + +++E      +   + + +F+    +  L   + +I + +  FF  
Sbjct: 118 PTRYPVLVDAGIIDMMAENLRSKISTAGESVVKFSVASLIGLLTLAIYLILVPLMAFFLL 177

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D   + Q L  +          ++ R + + I +   G     +  G+   + +   G+
Sbjct: 178 KDKNQMLQALQRVLPR-NRILAGQVWREMNQQITNYIRGKVTEMVIVGICTYAVFAFLGL 236

Query: 239 PSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTL 296
              + L V+  +  +IP  GA I    V +  L +  +      L +   I   +    L
Sbjct: 237 EYSLLLSVLVGLSVLIPYVGALIVTIPVILVALFQWGVGTDFWTLIIAYLIVQGLDGNLL 296

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            P L    + L  L     ++      G  G+F    L  LI  +       +   ++
Sbjct: 297 VPILFSEAVNLHPLVIILSVITFGGLWGFWGIFFAIPLATLIKAVIHAWPEEMVITED 354


>gi|291288291|ref|YP_003505107.1| hypothetical protein Dacet_2389 [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885451|gb|ADD69151.1| protein of unknown function UPF0118 [Denitrovibrio acetiphilus DSM
           12809]
          Length = 342

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 124/335 (37%), Gaps = 15/335 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + ++L+ +Y ++   +    +  I +   P      + K   +  + +I  V +  + + 
Sbjct: 19  VALVLLLMYRIQSIISIFAVSFFIAYLLDPAIDKLETWKIPRAAGI-LIFMVLLTIILVC 77

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +L++  Y   E+  L + V          P  ++ +                 + +K  
Sbjct: 78  AMLYVVPYLYYEINYLANMV----------PDIVNSVTNTAQNFAERMNIYVSLEGIKNQ 127

Query: 137 SETFLKTNGIDFIPRFASRF--GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                       +             +   ++I  + I +F+F +D   I+ ++      
Sbjct: 128 LAPKAGAIAKQTLAAALGILSSASTAVSSIVNIAIIPILVFYFLKDFDRINTKIFDALNR 187

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            +    K+      K++ + F G  I+A   G++      + G+   V +G+++ +++++
Sbjct: 188 KYDNDIKRYITEFDKILSAYFRGQLIVAAILGVLYTIILLVVGIKPAVLIGIVSGVLSVV 247

Query: 255 PGGAPISFTAVSIYLLIK--GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P    I   A S+ L      +I +   +F+  A+   I    + P +VG  + L     
Sbjct: 248 PYLGFIIGFAASLILAFVQFQDILHPLMVFIGFAVVQAIEGNLITPKIVGESLGLHPTAV 307

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            F L+ G    G+ G+ I   + A I ++  E   
Sbjct: 308 IFALLAGGSLFGIGGMIIALPVAAFIKILLSEQFA 342


>gi|229005620|ref|ZP_04163325.1| hypothetical protein bmyco0002_25530 [Bacillus mycoides Rock1-4]
 gi|228755652|gb|EEM04992.1| hypothetical protein bmyco0002_25530 [Bacillus mycoides Rock1-4]
          Length = 376

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 56/326 (17%), Positives = 121/326 (37%), Gaps = 5/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + FLK  F PVL A ++ +   P + S + +K  S         + V+ LF+
Sbjct: 44  ISFVFTPFIVFLKTIFFPVLLAGVLFYILHP-FVSLLERKGVSRIISIASIYILVIGLFV 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             ++ +      ++  L+  +           R      G           L+      +
Sbjct: 103 FLVVTVIPIIKDQVNALIDNLPYFGHEVERAARRF----GESNIIGKIQDSLNIDVGSIV 158

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   TN +  +    + F     +  L+ + +   LF+  +DG  + +         
Sbjct: 159 KDSTINFTNSLSSVTGNVTGFLSTLTEVVLTFVMVPFILFYLLKDGEQLPRYFLRFIPEQ 218

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
             +  K I   +   I S   G  I+++  G++L   Y + G+   V L V+  I+ ++P
Sbjct: 219 RRSSAKLILNDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAVLAMIVNVVP 278

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI     ++ +    +      + +   I      K + P ++G  + +  +   F 
Sbjct: 279 YVGPIIAILPALIIAFIDSPAMILKVIIVMMIVQLAEGKFISPQVMGKKLDIHPITIIFI 338

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++      G++G+ +     A++ V+
Sbjct: 339 ILTAGNLFGIMGVILAIPGYAILKVL 364


>gi|314922878|gb|EFS86709.1| conserved hypothetical protein [Propionibacterium acnes HL001PA1]
 gi|314980835|gb|EFT24929.1| conserved hypothetical protein [Propionibacterium acnes HL110PA3]
 gi|315090278|gb|EFT62254.1| conserved hypothetical protein [Propionibacterium acnes HL110PA4]
 gi|327327089|gb|EGE68870.1| membrane spanning protein [Propionibacterium acnes HL103PA1]
          Length = 386

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 61/329 (18%), Positives = 124/329 (37%), Gaps = 14/329 (4%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            PV  AL++    WP+ +   S+        + I  + ++ L       +     L+ ++
Sbjct: 64  VPVAVALMLTAAMWPLANWL-SRHHIHRGIASGICLLLLVILVGGVFTLVGAQIALQWRQ 122

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L  + V + +  +   +WL+  P     ++L T  +   ++    S+          I  
Sbjct: 123 LGDQSVASFKQAL---QWLAKSPLHTNEAQL-THLMQKAEAAMAGSQ--------GRIAS 170

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
            A+  G     +   ++  + A FFF  +G  ++++   L      A     ++     +
Sbjct: 171 TAAAAGSQIGRFGAGLVMALFATFFFVYEGDKLAEKSAVLIPREHRAAILDAAKRGWVAL 230

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLL 270
            +      I+A  +GL  G    + G    VA+G +T I+A +P  GA  +       +L
Sbjct: 231 VAYVRAAVIVAFVDGLGAGIGAAIIGSSMSVAIGALTFILAFVPIVGALTAGVVAVGVVL 290

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +    F A  + +     + I    L+PFL+G  + +  L    G+  G    G++G   
Sbjct: 291 VTLGFFKAFIMLIVFVAVMQIEGHVLQPFLLGKAVSIHPLIVLLGIAVGAIISGIVGALF 350

Query: 331 GPVLMALIAVIWKESIMAIKENKEKISSN 359
              ++A      K        N+   S +
Sbjct: 351 AIPIVAFGVAFIKALNPETPANEVPPSHD 379


>gi|270284414|ref|ZP_05966064.2| putative membrane protein [Bifidobacterium gallicum DSM 20093]
 gi|270276818|gb|EFA22672.1| putative membrane protein [Bifidobacterium gallicum DSM 20093]
          Length = 607

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/359 (12%), Positives = 113/359 (31%), Gaps = 23/359 (6%)

Query: 2   RETMLNPQGIMRWMIMFIILVSL-------YFLKGFFAP-VLSALIIGFTSWPIYSSFIS 53
            +    P  + R ++  +I V +       +F   +    ++ AL +     P+    I 
Sbjct: 77  NDPRRPPLWLSRALMYAVIAVFVGYFCYRTWFKISYIVLDIVIALFLSLAVEPLVLRLIR 136

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
                    AV   V ++ + +  +       + +   ++  +       +         
Sbjct: 137 H-GWRRGVAAVTCLVGLLLIIVGLMAAFGNLFVQQFISMMKGLPAVYDDLVTT------- 188

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
                  +     L    ++       ++++ I      A    +  L   L++   I+ 
Sbjct: 189 -----VEQYTKFRLPEISAIGPEILKNVQSSWITNFAGTAVSTAVEVLGGVLNLTTAIMV 243

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
            F+    G  + + +           +     +V     +     TI+A      +    
Sbjct: 244 AFYISIAGPRLRRSVCHWLAPSTQRRFLLAWTVVQDQTSNYLFSRTILAACSATCMAIFL 303

Query: 234 WLAGVPSHVALGVITAIMA-MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
            +  VP  + L + + +++  +P  G  +      ++      I+ A  + ++  +   I
Sbjct: 304 MIIHVPYWLPLALFSGVVSQFVPTIGTYLGGALPVLFAWGDRGIWYAVGVVVFITVYQQI 363

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            +  L P +    + +     F  ++      G LG F+   + A I V++K S     
Sbjct: 364 ENLLLSPKVSERTMDINPCVAFLTVLFFGSIFGALGAFLALPITASIQVLFKVSTKQYD 422


>gi|322390053|ref|ZP_08063589.1| membrane protein [Streptococcus parasanguinis ATCC 903]
 gi|321143260|gb|EFX38702.1| membrane protein [Streptococcus parasanguinis ATCC 903]
          Length = 375

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/318 (14%), Positives = 106/318 (33%), Gaps = 6/318 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L     P L A  + + + PI        +    F  +I  V +  +  + + +L    
Sbjct: 37  VLNTILLPFLIAGFLYYITNPIVELLEKHLKIKRVFGILITLVLLFGIIGLGIFYLLPIL 96

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  L++           + R LS  P           ++        LS   +  N 
Sbjct: 97  INQLTSLINSTQGLYWEVQSLVRKLSTNPL------FQNVNIQSTIQQLNLSYMDILQNL 150

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           ++ +           ++    +I   + L +F  DG  +   L+         +   +  
Sbjct: 151 LNSVTNSLGSVVNTIVNTVFILIMTPVFLVYFLVDGKKLLPMLERTILRNDKLHISSLLI 210

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + + +     G++I A   G +    Y   G+   +   + + +  +IP   P      
Sbjct: 211 SLNETVSRYISGISIDAFIIGTLAYIGYSFIGLKYALVFAIFSGLANLIPYVGPTIGLIP 270

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            I      ++       ++  I   I    L P +VGG +K+  +     L+      G+
Sbjct: 271 MIITYAFTDMDMMIKAVIYMLIIQQIDGNILYPRIVGGVMKVHPITIMVLLLLSSNIYGI 330

Query: 326 LGLFIGPVLMALIAVIWK 343
           +G+ +   + ++   I K
Sbjct: 331 IGMVVAIPVYSIGKEIVK 348


>gi|239977967|ref|ZP_04700491.1| putative integral membrane protein [Streptomyces albus J1074]
          Length = 346

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/347 (13%), Positives = 114/347 (32%), Gaps = 17/347 (4%)

Query: 14  WMIMFIILVSLYFLKGFFA---PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            ++   +  +L+ +   ++   P++  L++   +WP+ + F+          A + TV  
Sbjct: 2   LLVAVAVTAALWLVGQMWSVVWPLVVGLLLTTLTWPL-ARFLRNHSWPPALAASVVTVFA 60

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +    +  +      E   L   V+   +        L     G   +    +     
Sbjct: 61  LVVAAGIVALIAVPVASESGTLADGVIAGVEQ-------LRTWAAGPPLNIGDAEITKAM 113

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +     ++ L           ++    + +            +FFF +DG      L  
Sbjct: 114 DAGIERLQSSLGATVSTVATGLSTVVHGVVVAVIAVF-----LMFFFLKDGPRFLPWLTR 168

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                       ++      + +      ++ + + + +G   W+ GVP  + L V+T +
Sbjct: 169 QLPGRLAVDIPTVAERCWNTLGAFIRSQALVGLIDAVFIGLGLWILGVPLVLPLSVLTFV 228

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            A +P  GA  +     +  L+   + +A  +     +   +     +P +    + L  
Sbjct: 229 GAFVPIVGAFFAGFVAVLIALVSNGLTDALIVLAIIIVVQQLEGNVFQPMIQSRGLGLHA 288

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
                 +  G    G++G  +     ALI VIW+     + E   + 
Sbjct: 289 AVVLLAVTLGGSLAGIVGSLLAVPAAALIGVIWRYIREQLAEPPHEP 335


>gi|228998127|ref|ZP_04157726.1| hypothetical protein bmyco0003_26940 [Bacillus mycoides Rock3-17]
 gi|228761662|gb|EEM10609.1| hypothetical protein bmyco0003_26940 [Bacillus mycoides Rock3-17]
          Length = 376

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 122/326 (37%), Gaps = 5/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + FLK  F PVL A ++ +   P + S + +K  S     V   + V+ LF+
Sbjct: 44  ISFVFTPFIVFLKTIFFPVLLAGVLFYILHP-FVSLLERKGVSRIISIVSIYILVIGLFV 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             ++ +      ++  L+  +           R      G           L+      +
Sbjct: 103 FLVVTVIPIIKDQVNALIDNLPYFGHEVERAARRF----GESNIIGKIQDSLNIDVGSIV 158

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   TN +  +    + F     +  L+ + +   LF+  +DG  + +         
Sbjct: 159 KDSTINFTNSLSSVTGNVTGFLSTLTEVVLTFVMVPFILFYLLKDGEQLPRYFLRFIPEQ 218

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
             +  K I   +   I S   G  I+++  G++L   Y + G+   V L V+  I+ ++P
Sbjct: 219 RRSSAKLILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAVLAMIVNVVP 278

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI     ++ +    +      + +   I      K + P ++G  + +  +   F 
Sbjct: 279 YVGPIIAILPALIIAFIDSPAMILKVIIVMMIVQLAEGKFISPQVMGKKLDIHPITIIFI 338

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++      G++G+ +     A++ V+
Sbjct: 339 ILTAGNLFGIMGVILAIPGYAILKVL 364


>gi|257865853|ref|ZP_05645506.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257872187|ref|ZP_05651840.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257799787|gb|EEV28839.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257806351|gb|EEV35173.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
          Length = 371

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 55/334 (16%), Positives = 114/334 (34%), Gaps = 6/334 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F    FAPVL A  + +   PI    +   +    F  ++  + ++   I+  + +    
Sbjct: 40  FFSTLFAPVLIAGFLYYLLNPIVLFLMKTTKIKRLFAVILVLLLLVAAIILIFVSVIPNL 99

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  L   +    ++       ++D P            ++       LS   L    
Sbjct: 100 VSQITSLAENIPTFAKNMESWISRIADDPFFKQID------IAQQLENLNLSYGSLLQQF 153

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +               + I+ +   LF+  +DG  +   L ++           +  
Sbjct: 154 LSGLSTSLGSIVSTIASATMIIVTVPFILFYMLKDGEKLVPNLKTVFPERRREQIVGLLG 213

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K + +   G  I  I         YW+ GV      GVI  +  +IP   P      
Sbjct: 214 DLNKTLSNYISGQAIECIFVATFTFIGYWMIGVNYAFLFGVIAGVTNLIPYLGPYLGLIP 273

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +    F A    +   +   +    + P ++G  + +  L     L+      GL
Sbjct: 274 AVLVTVFDEPFRALLCCVVVLVVQQLDGNVIYPNVIGKSLAIHPLTIILVLLVAGNLAGL 333

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           LG+F+G    A+   I    +  IK++K K +  
Sbjct: 334 LGIFLGVPFYAICRTIVVFIVRLIKDDKIKKNQE 367


>gi|302542081|ref|ZP_07294423.1| putative membrane protein [Streptomyces hygroscopicus ATCC 53653]
 gi|302459699|gb|EFL22792.1| putative membrane protein [Streptomyces himastatinicus ATCC 53653]
          Length = 407

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/362 (14%), Positives = 119/362 (32%), Gaps = 22/362 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLK--------GFFAPVLSALIIGFTSWPIYSSFISK 54
           ++   P+ + R M++ + LV+ Y L         G    VL A  +     P      ++
Sbjct: 34  QSARMPRWLPRAMVLALALVACYRLATWAFDQLTGLLLNVLIAFFLALAIEPAVDRMAAR 93

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
                     I  + ++         L      ++  +V       ++   V  W++D  
Sbjct: 94  -GVRRGLATGIVFIGILVAAAGFFTLLGSMLADQIMTMVEDFP---KYLDQVVSWMNDTF 149

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
               +       L H   L    ++++K +  + +   A   G +F    +++       
Sbjct: 150 HTRLSRLEIQDSLLHSDWL----QSYVKNSADNVLDVSAQVLGGLFRLLTVTLF-----A 200

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           F+F  DG  + + L S+          +   I             ++A+  G+       
Sbjct: 201 FYFAADGPRLRRALCSVLPPNRQTEVLRAWEIAVAKTGGYIYSRGLMALISGVAHYILLE 260

Query: 235 LAGVPSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
             GVP   AL V   +++  IP        A+ + +    N + A  + ++  +     +
Sbjct: 261 SLGVPYAPALAVWVGLISQFIPTIGTYLAGALPMLIAFTINPWYAIWVLVFVVVYQQFEN 320

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             L+P +    + +    +F  ++ G   +G +G  I     A +       I       
Sbjct: 321 YLLQPRITSRTVDIHPAVSFGSVIAGTALLGAVGALIAIPATATLQAFLGAYIKRYDVTD 380

Query: 354 EK 355
           + 
Sbjct: 381 DP 382


>gi|91789517|ref|YP_550469.1| hypothetical protein Bpro_3669 [Polaromonas sp. JS666]
 gi|91698742|gb|ABE45571.1| protein of unknown function UPF0118 [Polaromonas sp. JS666]
          Length = 390

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/342 (13%), Positives = 115/342 (33%), Gaps = 20/342 (5%)

Query: 15  MIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +++  +L SL+ L      F P++  L+  +   P+ +    K+       A +  ++++
Sbjct: 38  LVILAVLASLFMLHWAKAVFIPLMLGLLFSYALSPVVNWLELKRVPR-WLSAAVLLLAIL 96

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
                      Y    E  +L+  + LA Q      +  +  P G   +           
Sbjct: 97  GAI----GSTAYSLRNEASQLLESLPLAAQKFRQAVKTRAGKPDGALENVQKAASQIEQA 152

Query: 132 SLKILSETFLKTNGIDFIPRFASRF---------GMIFLDYCLSIIFMIIALFFFYRDGF 182
           + +  + +   + G   +    + F          +  L        ++   +F    G 
Sbjct: 153 ARESGTASPGSSRGAMRVVVETATFNVRDYLWTGTLGLLTLIGQFTVVVFLTYFLMLSGD 212

Query: 183 SISQQLDSLGEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
           +  ++L  L           +    +   I+       + +   G++   A  + G+ + 
Sbjct: 213 TFCRKLIKLAPGFSSKKITLQALHEITGQIQRYLQVQLLASALVGVLTWLALLIIGLDNA 272

Query: 242 VALGVITAIMAMIPGGAPISFTAVS--IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
              G+   ++ ++P    +     S  +  L  G++  A  +         +V     P+
Sbjct: 273 AVWGIAAGVLNLVPYVGSLVTAGASGLVGFLQFGSLDMAIVVAGASLFIHMLVGNLFTPW 332

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           L     +L  +  F GL+      G+ GL +G  ++ ++  +
Sbjct: 333 LTSRASRLSPVAVFVGLLAWGWLWGVWGLLLGIPILMIVKSV 374


>gi|314966308|gb|EFT10407.1| conserved hypothetical protein [Propionibacterium acnes HL082PA2]
          Length = 386

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 61/329 (18%), Positives = 124/329 (37%), Gaps = 14/329 (4%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            PV  AL++    WP+ +   S+        + I  + ++ L       +     L+ ++
Sbjct: 64  VPVAVALMLTAAMWPLANWL-SRHHIHRGIASGICLLLLVILVGGVFTLVGAQIALQWRQ 122

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L  + V + +  +   +WL+  P     ++L T  +   ++    S+          I  
Sbjct: 123 LGDQSVASFKQAL---QWLAKSPLHTNEAQL-THLMQKAEAAMAGSQ--------GRIAS 170

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
            A+  G     +   ++  + A FFF  +G  ++++   L      A     ++     +
Sbjct: 171 TAAAAGSQIGRFGAGLVMALFATFFFVYEGDKLAEKSAVLIPREHRAAILDAAKRGWVAL 230

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLL 270
            +      I+A  +GL  G    + G    VA+G +T I+A +P  GA  +       +L
Sbjct: 231 VAYVRAAVIVAFVDGLGAGIGAAIIGSSMSVAIGALTFILAFVPIVGALTAGVVAVGVVL 290

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +    F A  + +     + I    L+PFL+G  + +  L    G+  G    G++G   
Sbjct: 291 VTLGFFKAFIMLIVFVAVMRIEGHVLQPFLLGKAVSIHPLIVLLGIAVGAIISGIVGALF 350

Query: 331 GPVLMALIAVIWKESIMAIKENKEKISSN 359
              ++A      K        N+   S +
Sbjct: 351 AIPIVAFGVAFIKALNPETPANEVPPSHD 379


>gi|309808761|ref|ZP_07702647.1| putative membrane protein [Lactobacillus iners LactinV 01V1-a]
 gi|309810014|ref|ZP_07703861.1| putative membrane protein [Lactobacillus iners SPIN 2503V10-D]
 gi|312870682|ref|ZP_07730790.1| putative membrane protein [Lactobacillus iners LEAF 3008A-a]
 gi|308167997|gb|EFO70129.1| putative membrane protein [Lactobacillus iners LactinV 01V1-a]
 gi|308169654|gb|EFO71700.1| putative membrane protein [Lactobacillus iners SPIN 2503V10-D]
 gi|311093793|gb|EFQ52129.1| putative membrane protein [Lactobacillus iners LEAF 3008A-a]
          Length = 380

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 61/337 (18%), Positives = 120/337 (35%), Gaps = 4/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F++   L F+      V+ A +  +   PI      K         +   + V+ + I
Sbjct: 43  IAFLLTPMLTFVNAIMPAVILAGVQYYLMNPIVDCLEQKYRIPRIVTILALFMVVLIILI 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + +  L      + K L+         G    R L   P            +S+ QS+  
Sbjct: 103 LIVNTLLPVIEAQTKSLIDHWPSYWDSGQEALRHLLHDPRLDGIRSDLNDAVSNAQSILF 162

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +         +           +     ++++     LFF  +DG  I+  L S     
Sbjct: 163 NT----GKASFNLFLENLFGAVNVISMLIVTLLTAPFILFFMLKDGKKINPYLTSFMPPR 218

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
               + K+   +   + S   G  I+A   G++    Y   G+   + L ++ A + +IP
Sbjct: 219 LQNVFSKLLHDINIAVSSYVRGQLIVAFWVGVMFAVGYTTIGLKYGLTLAILAACLNLIP 278

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
               +     +I + I  +      +F+   IE  I  + + P ++G  +K+  + T   
Sbjct: 279 YFGTLISLIPAIIIGILDSPVMLLKIFVVFFIEQLIEGRFISPLVMGSKMKMNPVTTILL 338

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+G     GLLG+     + A I +I  +     ++N
Sbjct: 339 LIGANSVAGLLGVIFAIPIYAGIKIIVVQVFDYYRKN 375


>gi|260463360|ref|ZP_05811561.1| protein of unknown function UPF0118 [Mesorhizobium opportunistum
           WSM2075]
 gi|259030950|gb|EEW32225.1| protein of unknown function UPF0118 [Mesorhizobium opportunistum
           WSM2075]
          Length = 402

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/319 (14%), Positives = 108/319 (33%), Gaps = 13/319 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + ++ + LY       P ++ +++ +   P+      +   S     V+  ++ + + ++
Sbjct: 42  LAVLALFLYVFSDILLPFVAGMVLAYFLDPVADRL-QRLGLSRFMATVVILITFLIVLVL 100

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             + L      +M +   K+             L  +        L  K   +   L+  
Sbjct: 101 AFVILIPVLATQMADFAGKLPEYLTR-------LQSLITSFDPKWLEEKFGVNANGLRDG 153

Query: 137 SETFLKTNGIDFIPRFAS--RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
             + L +        F S    GM  +      +   +  F+   D   +   +DS    
Sbjct: 154 LNSLLTSGFGLITTVFTSLWSSGMALVSVVSLFVVTPVVAFYMLLDWDRMVAVIDSWVPR 213

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
              A  + I+R +         G   + +  G +  +   L G+   + +G+   +++ I
Sbjct: 214 DNVATVRAIARDINTATAGFVRGQGTLCLVLGAMYATGLTLTGLNFAILIGLFAGLISFI 273

Query: 255 PGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           P    ++   +++ +       +      + +   I  FI    L+P LVG  + L  + 
Sbjct: 274 PYVGSLTGLVLAVGVAFVQFWPDWTMIVAVAVVFFIGQFIEGNILQPRLVGKSVGLHPVW 333

Query: 312 TFFGLVGGVRTMGLLGLFI 330
             F L       G +GL I
Sbjct: 334 LMFALFAFGALFGFVGLLI 352


>gi|126739190|ref|ZP_01754884.1| membrane protein [Roseobacter sp. SK209-2-6]
 gi|126719807|gb|EBA16515.1| membrane protein [Roseobacter sp. SK209-2-6]
          Length = 361

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/342 (15%), Positives = 121/342 (35%), Gaps = 18/342 (5%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             I  + L+FL     P +    I +   PI     +    S      +  +  + +F+ 
Sbjct: 16  AVIFALVLWFLGDVLLPFVLGAAIAYMIDPIADRLEA-MGLSRAGSTAVIIIVALVVFLA 74

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            LL +    + ++ +L             +P    D+    +A E +    +     +  
Sbjct: 75  TLLVILPTLIYQLIDLTR----------VLPEAFRDL--RSFAQEHFPSLFTEGSRAQQT 122

Query: 137 SETFLKTNGIDFIPRFASRFGM--IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
             +   T     I       G     ++  + ++ + +   +   D   +  ++D L   
Sbjct: 123 IASIAGTLQGKGIELAEGIVGSAASLVNVIVLMVIVPVVAVYLLLDWDRMVDRIDELVPR 182

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 ++++R +  V+ S   GM  + +  G     A  + G+   +A+G I  ++  I
Sbjct: 183 DHQPVIRRLARDIDAVLHSFIHGMGTVCLILGSYYAVALMIVGLNFGLAVGFIAGLVTFI 242

Query: 255 PGGAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           P    +   A++I L +    G+ ++   +    A    I    L P LVG  + L  + 
Sbjct: 243 PYLGALIGGALAIGLALFQFWGDWWSIGAVAAIFAFGQVIEGNYLTPKLVGNSVGLHPVW 302

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               L       G +G+ +   + A + V+ +  +    E++
Sbjct: 303 LLLALSVFGALFGFVGMLVAVPIAAALGVLARFVVEQYLESR 344


>gi|116251363|ref|YP_767201.1| transmembrane protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256011|emb|CAK07092.1| putative transmembrane protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 374

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/327 (12%), Positives = 105/327 (32%), Gaps = 11/327 (3%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +L  Q       +   +  LY       P ++ + I +   P+      +   S     +
Sbjct: 9   ILKRQIFFWLAALVFFIAFLYVFSSILLPFIAGMAIAYFLDPVADRLE-RLGLSRMMATI 67

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
              V+ + +F + L+ L    + +  +   ++               +     W      
Sbjct: 68  GILVAFVIVFTLALMILIPVLISQFNDFAQRLPGYISQLQQFITQAQNSLLPDWVENQMG 127

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
               +   +      FL       +       G   +D    ++   +  F+   D   +
Sbjct: 128 TIKDNLSGILSEGMGFLTG-----LFAQIWNSGKAIVDVISLLVVTPVVAFYILLDWDRM 182

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             ++D      + +  ++I++ + + I     G   + +  G+   +   L G+   + +
Sbjct: 183 IAKVDQWIPRDYVSDVRQIAKEIDQAIAGFIRGQGSLCLILGIYYAAGLSLVGLNFGLLI 242

Query: 245 GVITAIMAMIP----GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           G+   +++ IP        +    V++        +    L ++ +   F+    L+P L
Sbjct: 243 GLFAGMISFIPYVGSMVGLVLAVGVALVQFWPDYPWIGLVLVVFFSG-QFLEGNILQPKL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           VG  + L  +   F L       G +G
Sbjct: 302 VGSSVGLHPVWLMFALFAFGALFGFVG 328


>gi|313764012|gb|EFS35376.1| conserved hypothetical protein [Propionibacterium acnes HL013PA1]
 gi|313771457|gb|EFS37423.1| conserved hypothetical protein [Propionibacterium acnes HL074PA1]
 gi|313802245|gb|EFS43471.1| conserved hypothetical protein [Propionibacterium acnes HL110PA2]
 gi|313808117|gb|EFS46591.1| conserved hypothetical protein [Propionibacterium acnes HL087PA2]
 gi|313811416|gb|EFS49130.1| conserved hypothetical protein [Propionibacterium acnes HL083PA1]
 gi|313812599|gb|EFS50313.1| conserved hypothetical protein [Propionibacterium acnes HL025PA1]
 gi|313814861|gb|EFS52575.1| conserved hypothetical protein [Propionibacterium acnes HL059PA1]
 gi|313818884|gb|EFS56598.1| conserved hypothetical protein [Propionibacterium acnes HL046PA2]
 gi|313820711|gb|EFS58425.1| conserved hypothetical protein [Propionibacterium acnes HL036PA1]
 gi|313822522|gb|EFS60236.1| conserved hypothetical protein [Propionibacterium acnes HL036PA2]
 gi|313825682|gb|EFS63396.1| conserved hypothetical protein [Propionibacterium acnes HL063PA1]
 gi|313828024|gb|EFS65738.1| conserved hypothetical protein [Propionibacterium acnes HL063PA2]
 gi|313830829|gb|EFS68543.1| conserved hypothetical protein [Propionibacterium acnes HL007PA1]
 gi|313833257|gb|EFS70971.1| conserved hypothetical protein [Propionibacterium acnes HL056PA1]
 gi|313839013|gb|EFS76727.1| conserved hypothetical protein [Propionibacterium acnes HL086PA1]
 gi|314915044|gb|EFS78875.1| conserved hypothetical protein [Propionibacterium acnes HL005PA4]
 gi|314918624|gb|EFS82455.1| conserved hypothetical protein [Propionibacterium acnes HL050PA1]
 gi|314920433|gb|EFS84264.1| conserved hypothetical protein [Propionibacterium acnes HL050PA3]
 gi|314925625|gb|EFS89456.1| conserved hypothetical protein [Propionibacterium acnes HL036PA3]
 gi|314932107|gb|EFS95938.1| conserved hypothetical protein [Propionibacterium acnes HL067PA1]
 gi|314954627|gb|EFS99033.1| conserved hypothetical protein [Propionibacterium acnes HL027PA1]
 gi|314958574|gb|EFT02676.1| conserved hypothetical protein [Propionibacterium acnes HL002PA1]
 gi|314959822|gb|EFT03924.1| conserved hypothetical protein [Propionibacterium acnes HL002PA2]
 gi|314962395|gb|EFT06496.1| conserved hypothetical protein [Propionibacterium acnes HL082PA1]
 gi|314973717|gb|EFT17813.1| conserved hypothetical protein [Propionibacterium acnes HL053PA1]
 gi|314976364|gb|EFT20459.1| conserved hypothetical protein [Propionibacterium acnes HL045PA1]
 gi|314979205|gb|EFT23299.1| conserved hypothetical protein [Propionibacterium acnes HL072PA2]
 gi|314983353|gb|EFT27445.1| conserved hypothetical protein [Propionibacterium acnes HL005PA1]
 gi|314989501|gb|EFT33592.1| conserved hypothetical protein [Propionibacterium acnes HL005PA3]
 gi|315084107|gb|EFT56083.1| conserved hypothetical protein [Propionibacterium acnes HL027PA2]
 gi|315085309|gb|EFT57285.1| conserved hypothetical protein [Propionibacterium acnes HL002PA3]
 gi|315089076|gb|EFT61052.1| conserved hypothetical protein [Propionibacterium acnes HL072PA1]
 gi|315096492|gb|EFT68468.1| conserved hypothetical protein [Propionibacterium acnes HL038PA1]
 gi|315098899|gb|EFT70875.1| conserved hypothetical protein [Propionibacterium acnes HL059PA2]
 gi|315100861|gb|EFT72837.1| conserved hypothetical protein [Propionibacterium acnes HL046PA1]
 gi|315108079|gb|EFT80055.1| conserved hypothetical protein [Propionibacterium acnes HL030PA2]
 gi|327326742|gb|EGE68525.1| membrane spanning protein [Propionibacterium acnes HL096PA2]
 gi|327443057|gb|EGE89711.1| hypothetical protein HMPREF9570_02563 [Propionibacterium acnes
           HL043PA1]
 gi|327445180|gb|EGE91834.1| hypothetical protein HMPREF9571_02166 [Propionibacterium acnes
           HL043PA2]
 gi|327446899|gb|EGE93553.1| hypothetical protein HMPREF9568_00856 [Propionibacterium acnes
           HL013PA2]
 gi|327450161|gb|EGE96815.1| hypothetical protein HMPREF9581_02609 [Propionibacterium acnes
           HL087PA3]
 gi|327455281|gb|EGF01936.1| hypothetical protein HMPREF9586_01317 [Propionibacterium acnes
           HL083PA2]
 gi|328752827|gb|EGF66443.1| hypothetical protein HMPREF9579_02370 [Propionibacterium acnes
           HL087PA1]
 gi|328759249|gb|EGF72865.1| hypothetical protein HMPREF9588_00093 [Propionibacterium acnes
           HL025PA2]
 gi|328760263|gb|EGF73836.1| membrane spanning protein [Propionibacterium acnes HL099PA1]
          Length = 386

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 60/329 (18%), Positives = 124/329 (37%), Gaps = 14/329 (4%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            PV  AL++    WP+ +   S+        + I  + ++ L       +     L+ ++
Sbjct: 64  VPVAVALMLTAAMWPLANWL-SRHHIHRGIASGICLLLLVILVGGVFTLVGAQIALQWRQ 122

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L  + V + +  +   +WL+  P     ++L T  +   ++    S+          I  
Sbjct: 123 LGDQSVASFKQAL---QWLAKSPLHTNEAQL-THLMQKAEAAMAGSQ--------GRIAS 170

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
            A+  G     +   ++  + A FFF  +G  ++++   L      A     ++     +
Sbjct: 171 TAAAAGSQIGRFGAGLVMALFATFFFVYEGDKLAEKSAVLIPREHRAAILDAAKRGWVAL 230

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLL 270
            +      I+A  +GL  G    + G    VA+G +T I+A +P  GA  +       +L
Sbjct: 231 VAYVRAAVIVAFVDGLGAGIGAAIIGSSMSVAIGALTFILAFVPIVGALTAGVVAVGVVL 290

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +    F A  + +     + I    L+PFL+G  + +  L    G+  G    G++G   
Sbjct: 291 VTLGFFKAFIMLIVFVAVMQIEGHVLQPFLLGKAVSIHPLIVLLGIAVGAIISGIVGALF 350

Query: 331 GPVLMALIAVIWKESIMAIKENKEKISSN 359
              ++A      K        N+   + +
Sbjct: 351 AIPIVAFGVAFIKALNPETPANEVPPNHD 379


>gi|313898316|ref|ZP_07831853.1| putative membrane protein [Clostridium sp. HGF2]
 gi|312956698|gb|EFR38329.1| putative membrane protein [Clostridium sp. HGF2]
          Length = 400

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/313 (16%), Positives = 100/313 (31%), Gaps = 14/313 (4%)

Query: 47  IYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIP 105
           +      K +   +  AV+A +  + +    L  L       +  LV             
Sbjct: 71  LLGRLRMKPQHKRSIAAVLAVLLGIIIVCAFLALLLPQLFDSIFSLVKAFPGYVEDFQKF 130

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
              ++            +       + L       L            ++    F    L
Sbjct: 131 ALDFVEKYAIDTQQVTNYITDTDFFEKLTGFVTDALP---------QMAKATYAFGSTLL 181

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV----PKVIRSTFLGMTII 221
           +I+  I+A  +   D   +S     +   LFP    +    +      +  +  +G  I 
Sbjct: 182 NILLSIMAGLYMLIDKERLSGYAKKINYALFPKEISEYLHRMVLASGDIFNNFIVGKAID 241

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL 281
           ++  G++      +   P  + L VI  +  MIP   P       I +L   +   A   
Sbjct: 242 SLIIGILCYIGSLIFQFPYALLLSVIVGVTNMIPVFGPFIGAVPGIVILFIIHPITALYF 301

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L+           L P ++G  + LP +   F +  G    G++G+FIG    A+I + 
Sbjct: 302 ALFVFALQQFDGNILGPLILGDKLGLPSIGILFSVCVGGGLFGIIGMFIGVPCFAVIYMA 361

Query: 342 WKESIMAIKENKE 354
            KE +    + KE
Sbjct: 362 VKEFVNYRLKKKE 374


>gi|332174221|gb|AEE23475.1| protein of unknown function UPF0118 [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 356

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 59/353 (16%), Positives = 121/353 (34%), Gaps = 14/353 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +M  +++  + + L  L     PVL A +I +   WP+    +S+     +F   +
Sbjct: 15  DPDSVMLLIMLIAVFLLLAVLGTILMPVLVAAVIAYLLDWPVSQ--LSRAGLRRSFACSL 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
              S + L I+  + +      +   L+ ++     H      W+  +P           
Sbjct: 73  VIFSFLTLCILTFIGIVPVVSQQSINLIREMPQIWGHAQV---WVLHLPE----QYPDFV 125

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           HL   Q +       + + G   +    S          + ++ + + +FF  +D   + 
Sbjct: 126 HLGDVQDMLDGINERIVSLGEQLLSASVSSL-GSLASLLIYLVLVPLMVFFMLKDKDQLL 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L  L         K++   +   I +   G  I  I  G V    + L  +   + LG
Sbjct: 185 ANLSPLLPS-QRRLIKQVGSEMNTQIANYIRGKVIEIIIVGTVSAVTFALMDLRYALLLG 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTLRPFLVGG 303
           V+     +IP  GA +    V++  L +  I      L +   +   +    L P L   
Sbjct: 244 VLVGFSVLIPYIGAAVVTIPVAVVALFQWGITPDFWWLMIAYGVIQALDGNVLVPVLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            + L  +     ++      G  G+F    L  L+  +       ++E    +
Sbjct: 304 AVSLHPVYIIIAVLFFGGLWGFWGVFFAIPLATLVKAVANAWKGPLQELPPAV 356


>gi|303238314|ref|ZP_07324849.1| protein of unknown function UPF0118 [Acetivibrio cellulolyticus
           CD2]
 gi|302594018|gb|EFL63731.1| protein of unknown function UPF0118 [Acetivibrio cellulolyticus
           CD2]
          Length = 355

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 69/347 (19%), Positives = 133/347 (38%), Gaps = 30/347 (8%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  +  +R MI+ I+   LY ++      L   I+ +  + I S   SK  +       +
Sbjct: 8   LKKKSTIRIMILAILFFLLYLMRDMMNLFLLTFIMAYLMYRIQSFISSKISKFVKVGNRV 67

Query: 66  ATVSVMCLFIVPLLFLFYY----GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            T+ +  +F+   +   Y      + E K+++ +V+                       +
Sbjct: 68  VTICLYMIFVFLAILGIYNFLPLVIQESKDVIDQVISYYTQNEAA------------IEK 115

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                L       +    ++   G+D + + AS  G +  D  ++II  +    FF  + 
Sbjct: 116 YLLSALKKFNIDNLDISKYVGK-GLDILAKSASSIGKLSFDMFIAIILSL----FFLLER 170

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGV 238
             I++            ++ +I     K I S         +IA+   ++      + G 
Sbjct: 171 TRIARFTLKFKTSSISVFYNEIEYFGKKFINSFGKVIEAQFLIALINSILSTIVLSILGF 230

Query: 239 PSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKT 295
              + LG++  ++ +IP  G  IS   +S+     G +   T LF+WG I +   +    
Sbjct: 231 DKVIGLGIMIFVLGLIPVAGVIISLVPLSLIAFNTGGVK--TVLFVWGMIAVLHALEAYV 288

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
           L P L+    +LP   TF  L+ G     + GL IG PV M ++ ++
Sbjct: 289 LNPKLMSSKTELPVFYTFIILLIGEHFFKVWGLIIGIPVFMFILDLV 335


>gi|167032277|ref|YP_001667508.1| hypothetical protein PputGB1_1265 [Pseudomonas putida GB-1]
 gi|166858765|gb|ABY97172.1| protein of unknown function UPF0118 [Pseudomonas putida GB-1]
          Length = 357

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/342 (14%), Positives = 125/342 (36%), Gaps = 14/342 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             +I V LY L     P L  +++ + + P+           +          V+ +F +
Sbjct: 13  ALLIAVLLYSLHNILTPFLVGILLAYLADPLVDRLERLGLSRTW--------GVVVVFGL 64

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLK 134
             L L    ++ +  L  ++V   +    +  WL    +P       L        +   
Sbjct: 65  FTLVLLALLLVLVPMLAKQLVRLYELAPQMLDWLEQVALPWAQSRLGLADGFWKFDKIKA 124

Query: 135 ILSETFLKT-NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            +     +T + +  +   A+   +  + +  +++ + +  F+  RD   +  +L  L  
Sbjct: 125 AIGAHMGQTTDIVGMLLSHATASSLALMAWLANMVLIPVVGFYLLRDWDLMMGKLRGLLP 184

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                    ++    +V+ +   G  ++ +  G++  +   L G+   + +G++  + A+
Sbjct: 185 RQREPQVMGLAGECHEVLGAFVRGQLMVMLALGIIYSAGLMLVGLELGLLIGMLAGLAAI 244

Query: 254 IPGGAPISFTAVSI---YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +P    I     ++        G+++    +     +   +    L P LVG  I L  +
Sbjct: 245 VPYMGFIIGIGAALVAGLFQFGGDLYPMLGIVAVFMVGQALEGMVLTPLLVGDRIGLHPV 304

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              F ++ G    G  G+ +   + A+I V+ +      KE+
Sbjct: 305 AVIFAILAGGELFGFTGVLLALPVAAVIMVLLRHMHDLYKES 346


>gi|328752574|gb|EGF66190.1| hypothetical protein HMPREF9563_02304 [Propionibacterium acnes
           HL020PA1]
          Length = 386

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 60/329 (18%), Positives = 124/329 (37%), Gaps = 14/329 (4%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            PV  AL++    WP+ +   S+        + I  + ++ L       +     L+ ++
Sbjct: 64  VPVAVALMLTAAMWPLANWL-SRHHIHRGIASGICLLLLVILVGGVFTLVGAQIALQWRQ 122

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L  + V + +  +   +WL+  P     ++L T  +   ++    S+          I  
Sbjct: 123 LGDQSVASFKQAL---QWLAKSPLHTNEAQL-THLMQKAEAAMAGSQ--------GRIAS 170

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
            A+  G     +   ++  + A FFF  +G  ++++   L      A     ++     +
Sbjct: 171 TAAAAGSQIGRFGAGLVMALFATFFFVYEGDKLAEKSAVLIPREHRAAILDAAKRGWVAL 230

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLL 270
            +      I+A  +GL  G    + G    VA+G +T I+A +P  GA  +       +L
Sbjct: 231 VAYVRAAVIVAFVDGLGAGIGAAIIGSSMSVAIGALTFILAFVPIVGALTAGVVAVGVVL 290

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +    F A  + +     + I    L+PFL+G  + +  L    G+  G    G++G   
Sbjct: 291 VTLGFFKAFIMLIVFVAVMQIEGHVLQPFLLGKAVSIHPLIVLLGIAVGAIISGIVGALF 350

Query: 331 GPVLMALIAVIWKESIMAIKENKEKISSN 359
              ++A      K        N+   + +
Sbjct: 351 AIPIVAFGVAFIKALNPETPANEVPPNHD 379


>gi|315080225|gb|EFT52201.1| conserved hypothetical protein [Propionibacterium acnes HL078PA1]
          Length = 386

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 60/329 (18%), Positives = 125/329 (37%), Gaps = 14/329 (4%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            PV  AL++    WP+ +   S+        + I  + ++ L     + +     L+ ++
Sbjct: 64  VPVAVALMLTAAMWPLANWL-SRHHIHRGIASGICLLLLVILVGGVFILVGAQIALQWRQ 122

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L  + V + +  +   +WL+  P     ++L T  +   ++    S+          I  
Sbjct: 123 LGDQSVASFKQAL---QWLAKSPLHTNEAQL-THLMQKAEAAMAGSQ--------GRIAS 170

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
            A+  G     +   ++  + A FFF  +G  ++++   L      A     ++     +
Sbjct: 171 TAAAAGSQIGRFGAGLVMALFATFFFVYEGDKLAEKSAVLIPREHRAAILDAAKRGWVAL 230

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLL 270
            +      I+A  +GL  G    + G    VA+G +T I+A +P  GA  +       +L
Sbjct: 231 VAYVRAAVIVAFVDGLGAGIGAAIIGSSMSVAIGALTFILAFVPIVGALTAGVVAVGVVL 290

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +    F A  + +     + I    L+PFL+G  + +  L    G+  G    G++G   
Sbjct: 291 VTLGFFKAFIMLIVFVAVMQIEGHVLQPFLLGKAVSIHPLIVLLGIAVGAIISGIVGALF 350

Query: 331 GPVLMALIAVIWKESIMAIKENKEKISSN 359
              ++A      K        N+   + +
Sbjct: 351 AIPIVAFGVAFIKALNPETPANEVPPNHD 379


>gi|299141364|ref|ZP_07034501.1| membrane protein [Prevotella oris C735]
 gi|298577324|gb|EFI49193.1| membrane protein [Prevotella oris C735]
          Length = 368

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/338 (15%), Positives = 126/338 (37%), Gaps = 17/338 (5%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L  FF     A    +  +P+     +K       ++++ T+ ++   I  + +L    
Sbjct: 33  VLLPFFIAWFMA----YLLYPVVQFIENKLHIRVRAISILLTMLLVIAVIGGVFYLIIPP 88

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE-TFLKTN 144
           M+E  + +  V++   H       L++     + SE    +  H +      +      +
Sbjct: 89  MIEQFDKLQTVLMRWVHHTTHTNNLTN-----YISEWIQANQEHIERFFKSKDFGDTIKS 143

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            +  +  F S+   + L    S I ++  +FF   D   ++     +       +W+++ 
Sbjct: 144 AMPKLFSFVSQTASVILSIIASAITLLY-MFFILLDYEYLTTNWIRIFPKKNRPFWQELL 202

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
           + V + + +   G  ++A+  G++    + + G P  + LG++  I+ ++P     +   
Sbjct: 203 QDVKRELNNYVRGQGLVALCMGIMFCIGFTIIGFPMAIGLGILIGILDLVPYLHTFALIP 262

Query: 265 VSIYLLI----KGNIFNATC--LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            +   ++     G  F        L   +   I D  + P ++G  + L        L  
Sbjct: 263 TAFLAMLKAADTGQNFWIVFGLALLVFIVVQAITDFIVTPKIMGKAMGLNPAILLLSLSI 322

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
               +G +GL I   L  L+   W+  I   ++ + K 
Sbjct: 323 WGALLGFIGLIIALPLTTLLIAYWQRYITKEEQGQNKP 360


>gi|295706856|ref|YP_003599931.1| sporulation integral membrane protein YtvI [Bacillus megaterium DSM
           319]
 gi|294804515|gb|ADF41581.1| sporulation integral membrane protein YtvI [Bacillus megaterium DSM
           319]
          Length = 369

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/347 (14%), Positives = 123/347 (35%), Gaps = 16/347 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFA----PVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            + R   + +I+ +  FL  + +    P + A  I F   P+ + F  K         ++
Sbjct: 8   RLFRLACVLVIIAASIFLSYYVSSLIYPFIIACCIAFFINPMVNLFELKLRLPRYLAVLL 67

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD---IPGGMWASEL 122
           + V +  L    +  L    +     L   V    +  +     ++    +P     + +
Sbjct: 68  SMVLIFSLLAGLITLLITEIVAGSTYLAKVVPTNFKEVVIFIENIATEQILPFYERITSM 127

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGM-------IFLDYCLSIIFMIIALF 175
           +    +  Q+  + +   +  +    +  F             +  +    IIF ++A F
Sbjct: 128 FNNLNTGQQATILSNIKGVGNHIAQTVGDFLQNVLQSIPVLLSVLPNAATVIIFSLLATF 187

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F  +D + +  +             + +   +   +         +     +++     +
Sbjct: 188 FISKDWYKLMAKSSVFIPKKVRENGQTVVLELKNALFGFIKAQLTLISITTIIVLFGLLV 247

Query: 236 AGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
             V   + + ++  ++ ++P  G  + F    IY     N+  A  L +  A+ L +  +
Sbjct: 248 LRVDYAITVALLIGLVDILPYLGTGLVFVPWMIYAFATDNVSFAVGLSVLYAVVL-VQRQ 306

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            + P ++   I L  L T   L  G + +G  GL +GPV++ ++  +
Sbjct: 307 IMEPKILSSSIGLDPLATLISLFVGYQLIGFFGLIVGPVILVILKTL 353


>gi|197285426|ref|YP_002151298.1| hypothetical protein PMI1567 [Proteus mirabilis HI4320]
 gi|227355910|ref|ZP_03840302.1| possible permease [Proteus mirabilis ATCC 29906]
 gi|194682913|emb|CAR43285.1| putative membrane protein [Proteus mirabilis HI4320]
 gi|227163898|gb|EEI48800.1| possible permease [Proteus mirabilis ATCC 29906]
          Length = 362

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 60/351 (17%), Positives = 121/351 (34%), Gaps = 16/351 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +PQ I   +I+      +YF  G  AP+L A+++ +   WP +   + K   +  +   I
Sbjct: 15  DPQVIALVVILIAGFSIIYFFSGILAPLLVAIVLAYLLEWPTH--LLEKLGCARIWAVSI 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL-SDIPGGMWASELWT 124
                + +  + +L L      +   L+S +           R L    P  M    +  
Sbjct: 73  VLTLFIGISAIVILILAPTVWQQAMTLISDIPNMINKFNAFARELPERFPALMDVGIVDM 132

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
              +       ++E+ LK          AS  G+I L   + +I + +  FF  +D   +
Sbjct: 133 MAENLRSKFSTVAESVLK-------VSLASLIGVITLS--IYLILVPLMTFFLLKDKQQM 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              +  +          ++   V + I +   G     +  G+     +    +   V L
Sbjct: 184 LNAVRRVLPK-NRILAAQVWIEVNQQITNYIRGKVTEMVIVGVFTYFVFAFFDLRYSVLL 242

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTLRPFLVG 302
            V+  +  ++P  GA ++   V +  L +  + +    LF+   +   +    L P L  
Sbjct: 243 AVLVGVSVLVPYVGAVLATIPVIVIALSQWGLGSDFWALFIAYLVVQGLDSNLLVPILFS 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             + +  L     ++      G  G+F    L  LI  +       I    
Sbjct: 303 EAVNMHPLVIILSVIIFGGMWGFWGVFFAIPLATLIKAVLHALPDEIANEP 353


>gi|120435935|ref|YP_861621.1| membrane protein, UPF0118 [Gramella forsetii KT0803]
 gi|117578085|emb|CAL66554.1| membrane protein, UPF0118 [Gramella forsetii KT0803]
          Length = 347

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 60/345 (17%), Positives = 130/345 (37%), Gaps = 23/345 (6%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFL-----KGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M++ + ++ +    I+     FL     KGFFAP+++A+I+     P+      K     
Sbjct: 1   MISKKKLLFYSATIIVATYFLFLGLTKAKGFFAPMITAVILSLIVLPLSQRMERKL--KR 58

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
              A++ ++ +  + I  L+ +  + +    E   ++    +            P    A
Sbjct: 59  PLAAILNSLLLFLISIG-LMAIVSFQVRSFAEDWPQIKETME------------PKIENA 105

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            E   +H    +     ++    T  +    ++A  F      +  + +   + +FF   
Sbjct: 106 KEFALEHTPLNKQDIEEAKNSSSTMDLQP-GKWAKTFMSGLSSFLANYLLTFVYIFFLLN 164

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
                   L  +         K I     +V     LG  I+     ++      ++GV 
Sbjct: 165 YRHIFKNFLLRVFPDEKQQTIKTIIVKSAEVAPQYLLGKLILMGLLAVIYSIGLGISGVN 224

Query: 240 SHVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           + + + VI A++ +IP    +     AV+   L  G+I     + L   I  F+    L+
Sbjct: 225 NFILVSVIAAVLTLIPYIGNVIGFVMAVAFGFLTSGDITVLIGIALTFTITQFVESYVLQ 284

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           P++VG  + +        ++ G    G++G+ +   +MA+I V+ 
Sbjct: 285 PYVVGERVDVHPFFVIVSVILGNMVWGVIGMILAIPIMAIITVVL 329


>gi|302331566|gb|ADL21760.1| Putative integral membrane protein [Corynebacterium
           pseudotuberculosis 1002]
          Length = 419

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/302 (15%), Positives = 97/302 (32%), Gaps = 14/302 (4%)

Query: 43  TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH 102
             WP      SKK        +I  +            +      + K+LV +     Q 
Sbjct: 63  VLWPPVRWLRSKKVP-PATAVLIVAIGFFGAIGSIFAAMAPSVSSQSKDLVDRANEGVQR 121

Query: 103 GIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD 162
            +    W    P  +  S++     +  Q+L+  S               +    +I + 
Sbjct: 122 AL---HWAEHGPLNLDTSQVDGYIQNVTQALQEHSRNIANGVFSGLTTASSILITIILML 178

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
                       FFF +DG      +  +       +  ++   +  V+        I++
Sbjct: 179 IL---------SFFFLKDGTRFLPMVRRVAGPNLGWHLTEVLTRIWNVLAGFIRAQAIVS 229

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCL 281
           + + +++G    +  VP  + L V+T     IP  GA  +     +  L+   + NA   
Sbjct: 230 LVDAVLIGIGLLILKVPLALVLAVLTFFGGFIPIVGAFTAGALAVVIALVSNGVSNAIFA 289

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            +       I    L+P L    + L        +  G     ++G F+   + A +AV+
Sbjct: 290 LILIITVQQIEGHILQPVLQSRAMNLHAAVVLLSVTIGSALFSVVGAFLAVPVAATLAVL 349

Query: 342 WK 343
            +
Sbjct: 350 IR 351


>gi|295681206|ref|YP_003609780.1| hypothetical protein BC1002_6421 [Burkholderia sp. CCGE1002]
 gi|295441101|gb|ADG20269.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1002]
          Length = 387

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/338 (14%), Positives = 113/338 (33%), Gaps = 8/338 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q ++   +     + L+ L+    P L   +I +   P        +       A++   
Sbjct: 43  QSLIWGAVALSAGILLWSLRAVLTPFLLGAMIAYILQPGVEWLARHRTPR-GLAALLMIS 101

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               +     L  F     E+ E   +V         + +     P   W    ++  L+
Sbjct: 102 VFALVITSVALLAFLVIQQEVPEFARQVPSLAAKLEAILK-----PRLAWLGVSYSLDLA 156

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             +   +      +      + R+    G + +    + + + + LF+   D      +L
Sbjct: 157 SVRDWVVAHLIASEQGAALTVWRYLGTSGNLMIAVVGNAVLVPLVLFYLLYDRHEAFTRL 216

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           +S     +    +     + +++     G  ++          A  LAG+   + +G++T
Sbjct: 217 ESFVPRRWLDRTRDFVAEIDRMMSQYLRGQLLVVAILAAFYPVALALAGLSVALPIGLLT 276

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATC-LFLWGAIELFIVDKTLRPFLVGGPIK 306
           A+   IP  G   + +   +  L++ + +     + +   +   +    L P  VG  I 
Sbjct: 277 AVAVFIPYVGFASALSLALLAALLQFHDWYGLGAVIVVYGVGQILESAILTPRFVGERIG 336

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L  L   F L+   +  G  G+ +     A+ A   +E
Sbjct: 337 LHPLAVIFSLLAFGKLFGFFGVLLALPASAVFASALRE 374


>gi|86157493|ref|YP_464278.1| hypothetical protein Adeh_1066 [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774004|gb|ABC80841.1| protein of unknown function UPF0118 [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 359

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/343 (13%), Positives = 110/343 (32%), Gaps = 19/343 (5%)

Query: 9   QGIMRWMIMFIILVS---LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +   R + +  I      L+  +    P    + +  +  P+ ++   ++   +      
Sbjct: 16  RATARALTLLAIGAGFGFLWLARDLLVPTALGVTLALSVHPVVAALQRRRVSRTVASVAG 75

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             ++V  L  +               L  ++             L +   G+       +
Sbjct: 76  TLLAVAVLVGI------------GYVLWGRIAAFADELPGYEGRLREAAAGIRRHAAHLQ 123

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S            +K                  L +      ++  L+F   +G    
Sbjct: 124 AQSEQLVQAPRRPGEVKVQEGVPWGSLLVGTAQGALTFAGQATVVVFVLYFTLAEGPRFR 183

Query: 186 QQLDSLGEHLFPAYWKKISRI--VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
            +L +  +       + ++ +  + + +    L    +    G+V  + Y L G+     
Sbjct: 184 TKLLAWADRRPRGRARVLAALEELHRDVEQYMLNRVALNAALGVVTWAVYALYGLEHAAI 243

Query: 244 LGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            G+ TA++  IP  G A   F   ++ LL  G   +   +     + + +    + P  +
Sbjct: 244 WGITTALLHFIPYVGPALGLFLPAAMALLQYGTAKDVALVTAIYLVLVNVQGNVVDPLFL 303

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           G  ++L  L  F G +      G +GLF+   L++ + ++ + 
Sbjct: 304 GKQLRLSPLVVFLGSLFWFWLWGPVGLFLAVPLLSTVRIVCRH 346


>gi|262278141|ref|ZP_06055926.1| permease [Acinetobacter calcoaceticus RUH2202]
 gi|262258492|gb|EEY77225.1| permease [Acinetobacter calcoaceticus RUH2202]
          Length = 397

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 56/326 (17%), Positives = 122/326 (37%), Gaps = 18/326 (5%)

Query: 28  KGFFAPVLSALIIGFTSWPI-----YSSFISKKEESSTFLAVIATVSVMCLFIVPLLF-L 81
           K    P + A  + +   P+               S  F+ +  T+++   ++VPL++  
Sbjct: 26  KPVVIPFIGAFFLAYLFSPLVDVLVKIKLPRWLAISVVFIGIGVTLTIALWYLVPLIWKQ 85

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
             Y    +   +  +            W+S          +        +++    +T  
Sbjct: 86  LVYARDSIPAGIHWINAT------FLPWVSST---FNLQAMEIDTEQMSKAVMEYVQTNY 136

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             + I  +    ++ G+ F+    +++ + I  F+F  D   + Q L  L    + A   
Sbjct: 137 SADSIQSVLLKLAQSGLNFIQIGGTVVLIPIIAFYFLLDWDRMLQNLRRLIPRRYEANTL 196

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +I      V+ +   G  ++ +  G+V      L G+   + +G++  + ++IP      
Sbjct: 197 QIVGECHSVLGAFVKGQFLVMLLLGIVYAVGLQLIGLEVGLIIGMVAGLASIIPYLGFAV 256

Query: 262 FTAVSIY--LLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
               ++   L   G +  +   + +   I   I    L+PFL+G  I L  +   F ++ 
Sbjct: 257 GIIAAVIASLFQFGLDWMHLLLVGVVFMIGQAIEGYILQPFLLGDKIGLSPVAVVFAVLA 316

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKE 344
           G +  G LG+ I   + A+I V+ K 
Sbjct: 317 GAQLAGFLGMLIALPVAAVIVVLLKH 342


>gi|300172620|ref|YP_003771785.1| integral membrane protein [Leuconostoc gasicomitatum LMG 18811]
 gi|299886998|emb|CBL90966.1| Integral membrane protein [Leuconostoc gasicomitatum LMG 18811]
          Length = 372

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 111/320 (34%), Gaps = 10/320 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST----FLAVIATVSVMCLFIVPLLFL 81
           F+   F P+L A  + +   PI       K    +    F  +I  V  + +    L+ L
Sbjct: 40  FISTVFVPLLVAGFLYYVLKPILKLVTKIKIFGKSIPHQFAVIITFVLFLAVIATALIVL 99

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E+  L++ +    Q    + R+ ++     W   L   HLS        +    
Sbjct: 100 VPTLIREITNLITAMPSFAQ---DMQRFATETINSRWFENL---HLSVNADQIRSAVGQY 153

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             + ++                 ++++ + + LF+   DG  +   +             
Sbjct: 154 AASFLNITAGTLGTVVSTVTSVTINLVTIPVVLFYMLSDGDRLVPAIKKAFPDRHAQKIS 213

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +++  +   I     G  I  +  G+ +   Y + G P    L V+  I  ++P   P  
Sbjct: 214 ELTTKMDNTIEKYISGQAIEMLFVGVTMAIGYLIIGQPYAWLLAVVAGITNIVPYIGPWI 273

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               ++ +    +      +F+   +   +    + P ++G  + +  L     L+    
Sbjct: 274 GVIPALIVASTQSWKQMIFVFIVMTVVQQLDGNFIYPNVIGKSLAIHPLTIMLLLMVAGN 333

Query: 322 TMGLLGLFIGPVLMALIAVI 341
             G++G+ +   + A++ VI
Sbjct: 334 LWGIVGMIVIVPVYAVLRVI 353


>gi|296128904|ref|YP_003636154.1| protein of unknown function UPF0118 [Cellulomonas flavigena DSM
           20109]
 gi|296020719|gb|ADG73955.1| protein of unknown function UPF0118 [Cellulomonas flavigena DSM
           20109]
          Length = 384

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 58/345 (16%), Positives = 125/345 (36%), Gaps = 16/345 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    + Q +    +  +++++L  L     PVL AL++     P+  +   +     + 
Sbjct: 37  RVGTRSVQVLAVLALGAVVVLALTRLTLVVIPVLIALVLASAISPLVGALRRR--GVPSL 94

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           LA    +  +   +  +++L    +++  +       A      +  ++  +P       
Sbjct: 95  LATWIALLGLVALLAAIVWLVVRAVVD--QWDELRDQALDGFDELQTYVQGLP------- 145

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                    + +  + E+       D +   A        D+      M++ LFFF +DG
Sbjct: 146 ----FDVTDEQIASVRESAAGLLRSDAVGSGAIAGVSQTADFVAGFFIMVVVLFFFLKDG 201

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            +I + L    E       +++     + +     G  IIA  + + +G    L GVP  
Sbjct: 202 PAIWEFLLRPFEGERYLRGRRVGDATVRALGGYVRGTAIIAAVDAVGIGIGLALVGVPLV 261

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           + L V+  ++A +P  GA I+    ++  L+      A  +     +   +    L+P +
Sbjct: 262 IPLSVLVFLLAFVPLVGATIAGVLAALVALVAVGPVQALVVVGIVVLVNQLEGDLLQPVV 321

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +G  ++L  L     L  G    G+ G  +   L A      +  
Sbjct: 322 MGRQLRLHPLVILVALTAGTVLAGVTGAVLAVPLAASAWRAVQVW 366


>gi|104780561|ref|YP_607059.1| permease [Pseudomonas entomophila L48]
 gi|95109548|emb|CAK14249.1| putative permease [Pseudomonas entomophila L48]
          Length = 357

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/328 (14%), Positives = 122/328 (37%), Gaps = 14/328 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
            +P L  +++ + + P+           +          V+ +F +  L      ++ + 
Sbjct: 27  LSPFLVGILLAYLADPLVDRLERAGLSRTW--------GVVVVFSLFTLIFLALLLVLIP 78

Query: 91  ELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLKILSETFLKT-NGID 147
            L  +++   +    +  WL    +P       L        +    + E   +T + + 
Sbjct: 79  MLAKQLLRLYELAPQMLDWLQHVALPWVQSRLGLADGFWKFDKIKAAIGEHMGQTTDIVG 138

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            +   A+   +  + +  +++ + +  F+  RD   +  +L SL      +    ++   
Sbjct: 139 VLLSQATASSLALIGWLANLVLIPVVGFYLLRDWDLMMAKLRSLLPRQRESQVVGLAGEC 198

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
            +V+ +   G  ++ +  G++  +   L G+   + +G++  + A++P    I     ++
Sbjct: 199 HEVLGAFVRGQLLVMLALGVIYSTGLMLVGLELGLLIGMLAGLAAIVPYMGFIIGIGAAL 258

Query: 268 ---YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
                   G+++    +     +   +    L P LVG  I L  +   F ++ G    G
Sbjct: 259 VAGLFQFGGDLYPMLGIVAVFMVGQALEGMVLTPLLVGDRIGLHPVAVIFAILAGGELFG 318

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKEN 352
             G+ +   + A+I V+ +      KE+
Sbjct: 319 FTGVLLALPVAAVIMVLLRHVHDLYKES 346


>gi|262196494|ref|YP_003267703.1| hypothetical protein Hoch_3308 [Haliangium ochraceum DSM 14365]
 gi|262079841|gb|ACY15810.1| protein of unknown function UPF0118 [Haliangium ochraceum DSM
           14365]
          Length = 452

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/353 (13%), Positives = 124/353 (35%), Gaps = 15/353 (4%)

Query: 4   TMLNPQGIMRWMI-MFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           T      ++RW++ +  ++++ + L+      AP+L+A  I +   P+     +      
Sbjct: 18  TQRQVMTMVRWLLYLVFVVIAYWVLQRLAPVLAPLLAAAGIAYLLDPLVEKLEAS-GMRR 76

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
                +     + L    +  L      ++    + +         V +WL+    G   
Sbjct: 77  VVAVSLLITGFLGLLGGSVFILVPLVAEDLARFAASLPTMIAE---VNQWLAG--YGFEV 131

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              W  +L     L  +                 S FG++     L ++   +  F+F  
Sbjct: 132 PSRWEDYL-QSDKLSAMLNDVAGPATTFAAAALGSVFGLLGTLAELLLV--PVFAFYFLL 188

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D   I      +      A    +   + +V+     G   I   + ++  + + + G+ 
Sbjct: 189 DWHEIIDATRRMIPPRHRATSISVIAEIDRVVSGWIRGQFTIVCIQAVLYAACFHVIGIH 248

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLR 297
             +++G++  ++ +IP    +   A+++ L++           +     +   +    L 
Sbjct: 249 LAISVGLLVGLLTIIPFLGTVVGAAITLVLVLLHWQGWVQLASVAAVFIVLHALEAAVLT 308

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           P +VG  + L      F ++ G + +G  G+ +   + A +AV+ +      +
Sbjct: 309 PRIVGKRVGLGETGALFAVLAGGQLLGFTGVLLAVPIAASVAVLVRRLWRYYE 361


>gi|24379535|ref|NP_721490.1| putative permease [Streptococcus mutans UA159]
 gi|290580464|ref|YP_003484856.1| putative permease [Streptococcus mutans NN2025]
 gi|24377477|gb|AAN58796.1|AE014947_8 putative permease [Streptococcus mutans UA159]
 gi|254997363|dbj|BAH87964.1| putative permease [Streptococcus mutans NN2025]
          Length = 374

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/335 (15%), Positives = 118/335 (35%), Gaps = 12/335 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV---IATVSVMCLFIVPLLFLFY 83
           L  F        I+       Y     K  +S + L     +  V     F++ ++ +F 
Sbjct: 39  LSPFLTGAAIGYIVNIVMS-AYERLYDKLIKSQSLLKAKRPLTMVLAYATFVLVVVLIFT 97

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             + ++   +  ++  N   I     ++++    W S++        Q +  L   + + 
Sbjct: 98  IVLPDLIASLKSLLSINPKDIQ--NIINEVQHNKWVSKMLASFGGDTQ-ISSLISNYSRQ 154

Query: 144 NGIDFIPRFASRFGMIF--LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
               F+    +    +       +SI   II   +   +   + +Q + L +     Y  
Sbjct: 155 ILSQFLSVLTNVLTSVTSIASALISIFVSIIFSMYVLANKEKLGRQFNLLIDTYLGKYSG 214

Query: 202 KISRIV---PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
            +  +V          F+G T+ A+  G +      L  +P    +G++ A  A+IP   
Sbjct: 215 TVHYLVGILHSRFHGFFVGQTLEAMILGTLTAIGMMLFNLPYAATIGILIAFTALIPVVG 274

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
                 +   L++  +   A    ++  +        + P +VG  I LP +     +  
Sbjct: 275 AYIGVTIGTILILTQSFSQAVVFLVFVILLQQFEGNVIYPRVVGSSIGLPSMWVLLAITI 334

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G    GL+G+ +   ++A +  I K+ +   +  K
Sbjct: 335 GGALAGLVGMLMAVPILASLYQIIKDHVYQKQTQK 369


>gi|270291074|ref|ZP_06197297.1| permease [Pediococcus acidilactici 7_4]
 gi|270280470|gb|EFA26305.1| permease [Pediococcus acidilactici 7_4]
          Length = 376

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/342 (15%), Positives = 124/342 (36%), Gaps = 18/342 (5%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFIS----KKEESSTFLAVIATVSVMCLFIVPLLFL 81
           F+   F P++ A  + +   P+    +     K   S T+  V+  V  + L +  +   
Sbjct: 40  FISTVFMPLILATFLYYMLHPLVKLLMKVHYKKFRISRTWAVVLVFVGFLLLIVWGISSF 99

Query: 82  FYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
               + ++ +++  + ++A +  + +P+ +              K    P    + +E  
Sbjct: 100 LPSLIDQISQMLGNLPMIAKKLQVAIPQLVDH--------SWLRKVDFDPYLKNLNNE-- 149

Query: 141 LKTNGIDFIPRFASRFGMI---FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
           +      F+    +  G I     +  + +I + I LF+  +DG+ +   +  +      
Sbjct: 150 IGQYAEQFLANMTNSIGNIIAALTNITVIVITVPIILFYMLKDGYKLIPTISRIVPEHNR 209

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   +   + S   G  I  I  G      Y +   P  + LGVI  I  +IP  
Sbjct: 210 KSVLNLFYSMSDTLSSYISGQVIECIFVGTFTVIGYMIIHQPYGLVLGVIAGICNIIPYV 269

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P      S+ + I  +      + +   I   +    + P ++G  +++  L     L+
Sbjct: 270 GPYFGIFPSLLVAIAQSPEQVISVIIVVLIVQQVDGNLIYPNVIGKSLQIHPLTIIILLL 329

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              +  G+LG+ +     A++ V+          +++KI   
Sbjct: 330 VAGKLAGILGMILAVPTYAIVKVLINFIHHIWVLDRDKIEEK 371


>gi|225870497|ref|YP_002746444.1| membrane protein [Streptococcus equi subsp. equi 4047]
 gi|225699901|emb|CAW93811.1| putative membrane protein [Streptococcus equi subsp. equi 4047]
          Length = 384

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 107/296 (36%), Gaps = 5/296 (1%)

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + ++  +   +  + +   + + +L++ +    Q      + +    G          ++
Sbjct: 89  LCMLLAYFTFISLIVWIISIVIPDLIASISSLTQFDTRAIKEVISDLGHNKLIARAINYI 148

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL--DYCLSIIFMIIALFFFYRDGFSIS 185
                L      + +     FI         +       ++++   +   +       + 
Sbjct: 149 GGDAKLTETITNYSQQLLKQFIGVLTGILTSVTAVASAIINVVISFVFSLYVLASKEELC 208

Query: 186 QQLDSLGEHLFPAYWKKISRIV---PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           QQ  +L +     Y K I  +V       R  F+  T+ A+  G +     ++  +P   
Sbjct: 209 QQATTLIDTYTGKYAKAIHYLVGLLHSRFRGFFVSQTLEAMILGSLTAIGMFILQLPFAG 268

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            +GV+ A  A+IP        A+   L++  ++  A    ++  I   I    + P +VG
Sbjct: 269 TIGVLVAFTALIPVVGASIGAAIGFVLIMTQSMSQAVVFIVFLVILQQIEGNFIYPRVVG 328

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           G I LP +     +  G    G++G+ +   L A +  + K+ I   +  + + SS
Sbjct: 329 GSIGLPAMWVLMAITIGAALKGIVGMIVAVPLAATLYQVVKDHIHKKQALQNRQSS 384


>gi|315653902|ref|ZP_07906818.1| permease [Lactobacillus iners ATCC 55195]
 gi|315488598|gb|EFU78244.1| permease [Lactobacillus iners ATCC 55195]
          Length = 380

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 61/337 (18%), Positives = 120/337 (35%), Gaps = 4/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F++   L F+      V+ A +  +   PI      K         +   + V+ + I
Sbjct: 43  IAFLLTPMLTFVNAIMPAVILAGVQYYLMNPIVDCLEQKYRIPRIVTILALFMVVLIILI 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + +  L      + K L+         G    R L   P            +S+ QS+  
Sbjct: 103 LIVNTLLPVIEAQTKSLIDHWPSYWDSGQEALRHLLHDPRLDGIRSDLNDAVSNAQSILF 162

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +         +           +     ++++     LFF  +DG  I+  L S     
Sbjct: 163 NT----GKASFNLFLENLFGAVNVISMLIVTLLTAPFILFFMLKDGKKINPYLTSFMPPR 218

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
               + K+   +   + S   G  I+A   G++    Y   G+   + L ++ A + +IP
Sbjct: 219 LQNVFSKLLHDINIAVSSYVRGQLIVAFWVGVMFAVGYTTIGLKYGLTLAILAACLNLIP 278

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
               +     +I + I  +      +F+   IE  I  + + P ++G  +K+  + T   
Sbjct: 279 YFGTLISLIPAIIIGILDSPVMLLKIFVVFFIEQLIEGRFISPLVMGSKMKMNPVTTILL 338

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+G     GLLG+     + A I +I  +     ++N
Sbjct: 339 LIGANSVAGLLGVIFAIPIYAGIKIIVVQVFDYYRKN 375


>gi|303240190|ref|ZP_07326710.1| protein of unknown function UPF0118 [Acetivibrio cellulolyticus
           CD2]
 gi|302592281|gb|EFL62009.1| protein of unknown function UPF0118 [Acetivibrio cellulolyticus
           CD2]
          Length = 365

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 69/353 (19%), Positives = 132/353 (37%), Gaps = 22/353 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
            ++  +I+F+     +FL  F       FAP+L++LI+ +   P+      K     T  
Sbjct: 14  TLLTLLIIFMFGKIDFFLLPFRKLVAAIFAPILASLILYYILRPL-VRLFQKFRIPKTAS 72

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL--SDIPGGMWAS 120
            VI  +  + L I     +    + +  +L+S++                + I   +   
Sbjct: 73  IVITFIVAIILIIAIGTNIGVIVVEQFDDLMSELYTNFDISYFSRDAFMNNKIFEYLPID 132

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +L  K +    SL   S+ F                     +    I+ +   LF+F +D
Sbjct: 133 KLEQKGMEILDSLMNNSKNFFMG------------ILSTVTNISTIILMIPFILFYFLKD 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
               S+ L         A  +KI   + K + S  +G   +A+ +G+++   Y + G+  
Sbjct: 181 DEEFSKNLIEHLPKKHVANVEKILYDIDKALSSYLVGQMTVAMADGILMFIGYLIIGIKY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + L +   I A+IP   P      +I++ +  N   A  +FL   I   I    + P +
Sbjct: 241 PLILSIFVVITAIIPFFGPYIGIIPAIFVGLTMNPLMAVKVFLLETIVQQIDGNFIAPQI 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +   + +  +     L+ G    G +GL I   + A ++V  K      K  K
Sbjct: 301 MRQKLNVHPVTVILLLMIGSALYGFVGLLIVVPVYAALSVTIKNVYRIYKVEK 353


>gi|121605986|ref|YP_983315.1| hypothetical protein Pnap_3095 [Polaromonas naphthalenivorans CJ2]
 gi|120594955|gb|ABM38394.1| protein of unknown function UPF0118 [Polaromonas naphthalenivorans
           CJ2]
          Length = 393

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/342 (14%), Positives = 118/342 (34%), Gaps = 20/342 (5%)

Query: 15  MIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +++  IL  L+ L   +  F P++ +++  +   P+ +    ++       AV+     +
Sbjct: 41  LVILAILAGLFVLQWARAVFIPIMLSVLFSYAFSPLVNWLEFRRVPRWLSSAVL-----L 95

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP--------RWLSDIPGGMWASELW 123
              +  +    Y   LE  +L+  +  A Q                L  +       E  
Sbjct: 96  LAILGAMGSGAYLLRLEAAQLIEALPAAAQKLGRALKSSSGKSESALETVQRAASQIEQA 155

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
           T+  +        +   +       I  +     +  L     +  ++   +F    G +
Sbjct: 156 TRESAAVTGPNRGATRVVIEAPRFNIKDYLWTGTVGLLALIGQVTVVVFLTYFLMLSGDT 215

Query: 184 ISQQLDSLGEHLFPAYWKKISRI--VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             ++L  L           +  +  +   I+       + +   G++ G A    G+ + 
Sbjct: 216 FRRKLVKLAGPSLSKKKVTLQALHEISGQIQRYLQVQLLTSALVGVLTGLALMFLGLENA 275

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPF 299
            A GV+  ++ ++P    +   A S  +     G+I  A  +     +   +V   L P+
Sbjct: 276 GAWGVVAGVLNLVPYIGSLITAAASALVAFLQFGSINMALAVGGASVLIHTLVGNLLTPW 335

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           L     +L  +  F GL+      G+ GL +G  ++ ++  +
Sbjct: 336 LTSRASRLSPVAVFMGLLAWGWLWGVWGLLLGIPILMIVKSV 377


>gi|108757566|ref|YP_631778.1| hypothetical protein MXAN_3588 [Myxococcus xanthus DK 1622]
 gi|108461446|gb|ABF86631.1| putative membrane protein [Myxococcus xanthus DK 1622]
          Length = 367

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/340 (15%), Positives = 114/340 (33%), Gaps = 10/340 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + ++   L    G   PVL AL   +   PI +    ++ +  T+   +       + + 
Sbjct: 26  LGLVFALLSVFGGVAVPVLLALSGAYIFNPIVTELEKRRLDR-TWGTTLVFAVGTLMLVG 84

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +L+L      E  +L      A+   +P    L     G    +L  +  +        
Sbjct: 85  AVLYLIPVFREEASKLPDFFHRASTQVVPKVEGL----VGHSLPDLVRQRTTELGKQASE 140

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                       +  FA     + +   L +  + +  FFF +D   +   +  L     
Sbjct: 141 LVQSAGPAAARILASFAGNTARLVVT-LLGLSVVPVLAFFFLQDYPRLMGMVKDLLPRRA 199

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                +    V +V+ +   G  I+     ++  +    A +   + +GVI     M+P 
Sbjct: 200 VGLVSRRFAEVDEVLSAFVRGQLIVGGVLSVIYAAGLSAARIDMAIVIGVIAGFGNMVPY 259

Query: 257 ---GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
              G  I  + V + L  +G    A     +  I   +    + P +VG  + L  +   
Sbjct: 260 LGTGVGIVLSLVGLMLSWQGPWQLAAVAATF-VIGQMLEGFVITPRIVGEKVGLAPVAII 318

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             ++      G +G+ +   + A++ V+    +   +  +
Sbjct: 319 LAILAFGELFGFVGILLAVPVAAILKVVLSVVVERYRRTR 358


>gi|121602761|ref|YP_989062.1| hypothetical protein BARBAKC583_0766 [Bartonella bacilliformis
           KC583]
 gi|120614938|gb|ABM45539.1| putative membrane protein [Bartonella bacilliformis KC583]
          Length = 404

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/333 (14%), Positives = 120/333 (36%), Gaps = 19/333 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           ++ Q +     +   ++ ++       P ++ +++ +   P+    + +      F  ++
Sbjct: 46  MSKQILFWLGALISFILFMFIFGSILFPFIAGIVLAYFLNPV-IELLEEIGIHRVFGTIL 104

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI--PGGMWASELW 123
            T+ ++ +F+V L  L      ++++ VS           +P +++ I      +  +  
Sbjct: 105 ITLFIIVIFVVSLTILIPIISWQIQQFVSNG---------LPTYMNRIQTFFVEYNFDWI 155

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRD 180
             +     S    + T L     DFI  F +     G   ++    ++ + +  F+   D
Sbjct: 156 RHYFGSDPSELQSNITALLGQSSDFITSFLNSLLRSGRSIVNIVSLLVVVPVVAFYMLLD 215

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              + + +DS       A  + I   + + +     G   + +  G        + G+  
Sbjct: 216 WQRMIETVDSWIPRDHLATVRSIFHEMDRAVAGFIRGQGTVCLVLGGYYAIGLTITGLNF 275

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYL----LIKGNIFNATCLFLWGAIELFIVDKTL 296
            + +G++  +++ IP    +    +S+ +        +      + +   I  FI    L
Sbjct: 276 GLVIGMLVGLISFIPYIGTMIGFVLSVGVSWVQFYPDDWGRIVIVMVVFFIGQFIEACIL 335

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           +P LVG  + L  +   F L       G  G+ 
Sbjct: 336 QPKLVGSSVGLHPVWLMFALFAFGSLFGFTGML 368


>gi|322376872|ref|ZP_08051365.1| membrane protein [Streptococcus sp. M334]
 gi|321282679|gb|EFX59686.1| membrane protein [Streptococcus sp. M334]
          Length = 388

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 114/335 (34%), Gaps = 5/335 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    L FL     PV+ + ++ +   PI       K         I  V +    I
Sbjct: 42  ISFLFSPVLDFLAVVMLPVILSGLLYYLLNPIVDWMEKHKINR-VIAISIVFVIIAIFII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      V +  +    V   L              + L++  S   
Sbjct: 101 WGLAVAIPNLQRQVLTFARNVPVYLEDADRVIDDLVTKRLPDDFRPQLEQVLTNFSSQAT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +  + + +  ++++  F S    +     +++I +   LF+  RDG  +   L       
Sbjct: 161 VWASKVSSQAVNWVSAFISGASQV----IVALIIVPFMLFYLLRDGKGLRNYLTQFMPTK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   V + + +   G   +AI   ++    + + G+   V LGV   I+ ++P
Sbjct: 217 LKEPVGQVLSDVNQQLSNYVRGQVTVAIIVAVMFIIFFKIIGLRYAVTLGVTAGILNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPVMLLKVVIVFIVEQTIEGRFVSPLILGSQLNIHPINVLFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+      G+ G+ +G  + A   V+        K
Sbjct: 337 LLTSGSMFGIWGVLLGIPVYASAKVVISAIFEWYK 371


>gi|315031394|gb|EFT43326.1| conserved hypothetical protein [Enterococcus faecalis TX0017]
 gi|315166844|gb|EFU10861.1| conserved hypothetical protein [Enterococcus faecalis TX1341]
          Length = 390

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/334 (16%), Positives = 113/334 (33%), Gaps = 7/334 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F    FAPVL A  + +   P+ +  + K +    +  ++  + ++   ++ LL +    
Sbjct: 49  FFSTLFAPVLVAGFLYYLLNPVVN-LLMKTKMKRIYAVLLVFLLLIIALVLILLTIIPKL 107

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++  L S +    +        ++++P            L+       +S   +    
Sbjct: 108 ADQLASLASSMPDFFKQVETWIYEIAELPIFKQID------LTSYIEKMDISYANIIQQF 161

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +               + ++     LF+  +DG  +   +              +  
Sbjct: 162 LSSLSSSLGSIVSTVASTTIVLVTAPFILFYMLKDGDKLVPAIQRFLPEKRKDDIVDLLG 221

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + + + S   G  I  +  G      Y L GV      GVI     +IP   P    A 
Sbjct: 222 QLNQTLSSYISGQAIECLFVGTFTIIGYSLLGVRYAFLFGVIAGFTNLIPYLGPYLGLAP 281

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + I      A    L   +   +    + P ++G  +K+  L     L+      GL
Sbjct: 282 AVLVTIFNEPVKAALCCLVVLVVQQLDGNIIYPNVIGKSLKIHPLTIILILLVAGNLAGL 341

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           LG+F+G    A+   I    I  +K  + +  +N
Sbjct: 342 LGIFLGVPFYAICRTIIYYVIDMVKAGRSEKVTN 375


>gi|119775046|ref|YP_927786.1| hypothetical protein Sama_1911 [Shewanella amazonensis SB2B]
 gi|119767546|gb|ABM00117.1| protein of unknown function UPF0118 [Shewanella amazonensis SB2B]
          Length = 372

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 56/348 (16%), Positives = 122/348 (35%), Gaps = 17/348 (4%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-----WPIYSSFISKKEESSTFLAVIAT 67
           + + +  IL  L+ L  F   +L+ L++         WP+    +S+   + T  A +  
Sbjct: 17  QAVTLLFILFGLWALIYFAGGLLAPLLVALVLAFLLEWPVAQ--MSRIGVNRTTGASLML 74

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V    + ++ +  L      +   L++++      G+     L+       ++E      
Sbjct: 75  VLFAGIVLLMVFGLVPSLWKQGMSLLTELPAMLDKGMGYLEELTQKYPQYVSAE------ 128

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +++   +  L T  +  I +    F    L   +  I + + +FFF +D   + + 
Sbjct: 129 -QVIAMETELKRMLDTQHLLDIGKQILGFSASLLVLMVYTILVPLLVFFFLKDKEELIRG 187

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                        +K+   + + I +   G  I  I  G V    +   G+     LGV+
Sbjct: 188 SKRFFPS-NRELARKVWGEMNQQIFNYIRGKVIEIIIVGAVSYVFFAFMGLRYSALLGVL 246

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPI 305
           T +  +IP  GA +    +++    +          + G   +  +D   L P L    +
Sbjct: 247 TGLSVLIPYVGATLVTLPIALVGFFQWGFSPEFGYLMLGYGIIQALDGNVLVPVLFSDAV 306

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L  +     ++      G  G+F    L +L+  +          +K
Sbjct: 307 DLHPVIIIAAVLVFGGLWGFWGVFFAIPLASLVKAVVNVWPRNHTSDK 354


>gi|187920328|ref|YP_001889359.1| hypothetical protein Bphyt_5642 [Burkholderia phytofirmans PsJN]
 gi|187718766|gb|ACD19989.1| protein of unknown function UPF0118 [Burkholderia phytofirmans
           PsJN]
          Length = 361

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/342 (14%), Positives = 132/342 (38%), Gaps = 18/342 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +   + +   +++ ++   +Y        V+ A+   +  +P+       +      +A 
Sbjct: 6   VRTARQVWTALLIALLFFCIYMASSTLLVVVFAVFFSYLIYPMVDLVERIRPRRMPRVAS 65

Query: 65  IATVSVMCLFIVPL--LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           IA V V+ + ++ +           E   L++++    +  +P     + IP   +   L
Sbjct: 66  IALVFVVVVAVIAVVGSIFGVQLQDEATHLLAQLPQLMKSDVP-----NRIPLPHFLEPL 120

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI---IALFFFYR 179
             + +   +             G D     A   G+  +    ++I+++   I  F   +
Sbjct: 121 RERIVDFVRGQI--------ETGSDKAVPMARSVGLGVMHAASNLIYLVLIPILSFLLIK 172

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           +G  + +    L        W +I   +  ++      +  +++   +  G A+ L GVP
Sbjct: 173 EGPQMREDFLDLLNDRHRTLWAEIVTDLNVLLSKYVRALLFLSLATLICYGMAFSLLGVP 232

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               L V   ++  +P   P+   A+++ + +     +   L ++ A+     D  L P+
Sbjct: 233 YAFLLAVSAGLLEFVPFAGPLGAVAITLVVAVFSGYPHLLWLVIFIALYRLFQDYVLNPY 292

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           L+   +++       GL+ G +  G+ G+F+   ++A++ +I
Sbjct: 293 LMSEGVEVSPFLVIVGLLAGDQLGGVAGIFLAVPVIAMLKII 334


>gi|125624776|ref|YP_001033259.1| putative permease [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493584|emb|CAL98569.1| putative permease [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071576|gb|ADJ60976.1| putative permease [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 371

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/345 (13%), Positives = 115/345 (33%), Gaps = 15/345 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           + +   +++F++    +  +         F P + A  + +   P+ +    K +    F
Sbjct: 13  EILAVTLLIFLLTQIQFVFQPIKTLLTLLFVPFIIAGFLYYVFNPVVTFMEEKLKIKKVF 72

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  + ++ + I  +  +    + ++  L++      +    +  W+  +      S 
Sbjct: 73  GIFIVLILILGMIIFAVASVIPSLITQLTSLIN---ATGKAYPQIRTWIEGLQHNPRFSH 129

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI---IALFFFY 178
           ++ +     +SL             + +       G I       I+ MI   I L++  
Sbjct: 130 IYEQL--DIKSLVERLNLSYTDILHNLLNSITISVGSIVSIITSIIMVMILVPILLYYML 187

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +DG  I   L             ++   +   I     G+ + A+   +V+   Y + G+
Sbjct: 188 KDGEKIIPFLKENVLTEDKLNIFELLENMNHTISRYISGVALDALLVFIVVFVGYMVLGI 247

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P      +   +  +IP   P       +  +       A     +  +   +    + P
Sbjct: 248 PYAFLFALFAGVTNLIPYAGPYIGVLPMVVTVAFNRPITALIAVTYVLVLQQLDGNLVYP 307

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            +VG  +K+  +     ++      G+LG+ I      L+  I K
Sbjct: 308 KIVGSAVKVHPVTVMILMLISGSLYGILGMIIAVPAYCLVKEIVK 352


>gi|89902219|ref|YP_524690.1| hypothetical protein Rfer_3452 [Rhodoferax ferrireducens T118]
 gi|89346956|gb|ABD71159.1| protein of unknown function UPF0118 [Rhodoferax ferrireducens T118]
          Length = 394

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 57/342 (16%), Positives = 110/342 (32%), Gaps = 20/342 (5%)

Query: 15  MIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +++   L S++ L+     F PVL  L+  +   P+       +   +   AV+     +
Sbjct: 42  LVVIATLASVFALRWAGAVFIPVLVGLLFSYALSPVVDWLQLLRIPRALSAAVL-----I 96

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS--------ELW 123
              +  +    Y    +  +LV  +  A Q      R L   P     +        E  
Sbjct: 97  LGILSGIGAGAYSLSDDASKLVELLPAAAQKLHDSVRSLPGKPNNTLTTVQRAAAQIEQA 156

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
               +    +    +          I        M  L     I  + +  FF    G  
Sbjct: 157 ADESTQAAPVSRSVQRVQIEKPKFNIKDHLWSGTMGLLGMLGQIGMVALITFFLMASGDQ 216

Query: 184 ISQQLDSLGEHLFPAYWKKISRI--VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             ++L  L           +  +  +   I+   L     +I  GL    ++   G+   
Sbjct: 217 FRRKLIKLTGPTLSKKKVTLQALNQIHDQIQRYMLVQLFTSILVGLATWLSFLAIGLEHA 276

Query: 242 VALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
              GV   ++ +IP  G   I+  +  +  L  G +  A  +     +   I    L P+
Sbjct: 277 AVWGVAAGVLDLIPYVGSVAIATGSALVSFLQFGTLEMALIVSGTSLVIHSIEAFLLTPW 336

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           L     K+  +  F G++      G+ GL +G  ++ +I  I
Sbjct: 337 LTSRTNKMNPVAIFVGVLAWGWLWGIWGLLLGVPILVVIKAI 378


>gi|317503774|ref|ZP_07961786.1| membrane protein [Prevotella salivae DSM 15606]
 gi|315665071|gb|EFV04726.1| membrane protein [Prevotella salivae DSM 15606]
          Length = 368

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/334 (14%), Positives = 119/334 (35%), Gaps = 13/334 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY-GMLEM 89
             P   A +I +  +PI      +       ++++ T  ++   I  + +L +   + + 
Sbjct: 34  LLPFFIAWLIAYLLYPIVQFIEKRLHIHVRAISIVLTFLLLIGVIGGVCYLIFPPMIAQF 93

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             L   ++    H        + I   + A++   +     +      +T +      F+
Sbjct: 94  DRLQDVLMRWVHHTTHTNDITNYISEWVQANQNQIERFFKSKDFGDAIKTAMPQV-FSFV 152

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
            + AS    I           ++  FF   D   ++     +       +W+++ + V  
Sbjct: 153 SQTASIIWSIVAS-----AITLLYTFFILMDYEYLTANWIRIFPKKNRPFWQELMQDVKH 207

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            + +   G  ++A+  G++    + + G P  + LG++  I+ ++P     +    +   
Sbjct: 208 ELNNYVRGQGLVALCLGIMFCIGFTIIGFPMAIGLGILIGILDLVPYLHTFALIPTAFLA 267

Query: 270 LI----KGNIFNATC--LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
           ++     G  F        L  A+   I D  + P ++G  + L        L      +
Sbjct: 268 MLKAADTGQNFWVIFGLALLVFAVVQVITDFIVTPKVMGKAMGLNPAILLLSLSVWGALL 327

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           G +GL +   L  LI   W+  +    + ++K +
Sbjct: 328 GFIGLIVALPLTTLIIAYWQRYVTKEDQGQDKPN 361


>gi|311032867|ref|ZP_07710957.1| hypothetical protein Bm3-1_20404 [Bacillus sp. m3-13]
          Length = 366

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/306 (14%), Positives = 107/306 (34%), Gaps = 12/306 (3%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           ++ FI       +   FAP++ A ++ +   P+ +               +A +S+  +F
Sbjct: 25  LVDFIFTPLTVMISTLFAPIILAGVMYYLLRPLVNLADRYIPR------ALAILSIYLMF 78

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           I  +  L +        L  +V    ++   +   + D    +  +E   +     +   
Sbjct: 79  IGLITLLLFLI---GPTLQQQVNSLVKNTPEIINDIRDYTIELQENEYIARFQQDERFSL 135

Query: 135 ILSETFLKTNGIDFIPRFASRFG---MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                 +  N   ++  F S           + + ++ +   LF+  +DG  +  Q+   
Sbjct: 136 EEISGKIADNLNAYVTAFGSNVVNVISAITGFLILLVVIPFVLFYMLKDGERLPDQVLKF 195

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                    + + + +   + S   G  I+++  G+++   + + G+   + L +I    
Sbjct: 196 IPRQHEREGRNVLKDMDIALSSYIQGQIIVSVFVGVLIYIGFLIIGLEYSLVLALIAMFT 255

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP   P   T  S+ +        A  + L   I   I    + P ++G  + +  L 
Sbjct: 256 NVIPFIGPFIGTIPSVIVAFFDRPIMALWVLLVVVIVQQIESNFISPQVMGKKLDVHPLT 315

Query: 312 TFFGLV 317
               L+
Sbjct: 316 IILLLL 321


>gi|312793513|ref|YP_004026436.1| hypothetical protein Calkr_1317 [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312875972|ref|ZP_07735961.1| protein of unknown function UPF0118 [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311797170|gb|EFR13510.1| protein of unknown function UPF0118 [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|312180653|gb|ADQ40823.1| protein of unknown function UPF0118 [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 351

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 121/360 (33%), Gaps = 18/360 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFL------KGFFAPVLSALIIGFTSWPIYSSFISK 54
           M    L  + +   + M +I + +YF            P L AL + +   P       K
Sbjct: 1   MHIIKLVKKYLTDILFMTLIAIVIYFFVNIKAFWPILIPFLIALFLSYLLKPCVDFLEKK 60

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI- 113
                    +I+   +  + I+  ++     + E K+L+  V          P +++ I 
Sbjct: 61  VRSRD-ISILISFAIIFGITIMVFVYFIPLFVSETKQLIQNV----------PEYIALIQ 109

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
                        L+      + + +                         L  + + I 
Sbjct: 110 KWFFEIDSKLLNKLNIDIKEILNANSINIEGISKQTLSIFLNIVKSISSNILYYLLIPII 169

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
            F+  RD   +   +  L    +      I   + +V+     G  + A   G++    +
Sbjct: 170 SFYILRDWKRLVMWIKWLLPEKYRKEGLYIFADINRVLHQYIRGQLLDAFIVGMLSFIGF 229

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
            +  V     LGVIT I  +IP   PI  +  ++ + +  +   A  + ++  +   +  
Sbjct: 230 SILSVRYAALLGVITGIGNLIPYFGPIFSSIPAVIIALSDSYIKAILVVIFLVLLQQVDS 289

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             + P ++G  + L  L     ++   +  G + +F    + A+I +I+   +  IK  K
Sbjct: 290 FIISPRVIGSKVGLHPLTIIIVIILANKIFGFVAMFFAIPIAAVIKIIFINIMKRIKSEK 349


>gi|225016793|ref|ZP_03705985.1| hypothetical protein CLOSTMETH_00705 [Clostridium methylpentosum
           DSM 5476]
 gi|224950461|gb|EEG31670.1| hypothetical protein CLOSTMETH_00705 [Clostridium methylpentosum
           DSM 5476]
          Length = 405

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 65/340 (19%), Positives = 125/340 (36%), Gaps = 10/340 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS--KKEESSTFLAVIATVSVMCLFIVP 77
           I  +   +    AP     +I F  +          KK  +        ++SV+   ++ 
Sbjct: 32  IASAFGTITSLLAPFFYGAVIAFLLYLPSRKLEGLIKKTNNKFLQKRARSISVLSALVLF 91

Query: 78  LLFLFYYGMLEMKELVSKVVL-ANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
           +  L    +L +  +   +V  AN     +    + I      ++  +  L + QS    
Sbjct: 92  IALLAVLLLLFIPGMYKNIVSFANSIPGYLNDAYNFITQYAEGADWLSNILKNIQSQLTF 151

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG---- 192
                     D I  +A      F+   +++   II   +   D  SI + L+ +     
Sbjct: 152 DNIMGWVQAAD-IGTYAKGI-TSFIGVVVNLFLGIILSIYMLIDRASIKRNLNRVVVLAL 209

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           +         +   +  V+ S   G  + A+  G+V G    +  VP+   LG+I  + +
Sbjct: 210 KPRRAKNLGALLSRIADVLYSFLYGQALDALFVGIVTGIILAVIQVPNAAVLGLIYGLFS 269

Query: 253 MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           +IP  GA      V +   + G        F+   I  +I    + P ++G  I +  L 
Sbjct: 270 LIPYFGAMFGVLTVCLLTFLSGGFTKLILAFVLITILQWIDGNIINPKIIGNAIGIKPLY 329

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             FG+       G++G+ IGP LMA+I  + +E +   + 
Sbjct: 330 VIFGVTLFGGLFGIVGMLIGPPLMAIIIELVQEFVGDRER 369


>gi|327331068|gb|EGE72808.1| putative permease [Propionibacterium acnes HL097PA1]
          Length = 386

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 60/329 (18%), Positives = 125/329 (37%), Gaps = 14/329 (4%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            PV  AL++    WP+ +   S+        + I  + ++ L       +     L+ ++
Sbjct: 64  VPVAVALMLTAAMWPLANWL-SRHHIHRGIASGICLLLLVILVGGVFTLVGAQIALQWRQ 122

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L  + V + +  +   +WL+  P  +  ++L T  +   ++    S+          I  
Sbjct: 123 LGDQSVASFKQAL---QWLAKSPLHINEAQL-THLMQKAEAAMAGSQ--------GRIAS 170

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
            A+  G     +   ++  + A FFF  +G  ++++   L      A     ++     +
Sbjct: 171 TAAAAGSQIGRFGAGLVMALFATFFFVYEGDKLAEKSAVLIPREHRAAILDAAKRGWVAL 230

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLL 270
            +      I+A  +GL  G    + G    VA+G +T I+A +P  GA  +       +L
Sbjct: 231 VAYVRAAVIVAFVDGLGAGIGAAIIGSSMSVAIGALTFILAFVPIVGALTAGVVAVGVVL 290

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +    F A  + +     + I    L+PFL+G  + +  L    G+  G    G++G   
Sbjct: 291 VTLGFFKAFIMLIVFVAVMQIEGHVLQPFLLGKAVSIHPLIVLLGIAVGAIISGIVGALF 350

Query: 331 GPVLMALIAVIWKESIMAIKENKEKISSN 359
              ++A      K        N+   + +
Sbjct: 351 AIPIVAFGVAFIKALNPETPANEVPPNHD 379


>gi|256822848|ref|YP_003146811.1| hypothetical protein Kkor_1631 [Kangiella koreensis DSM 16069]
 gi|256796387|gb|ACV27043.1| protein of unknown function UPF0118 [Kangiella koreensis DSM 16069]
          Length = 376

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/338 (14%), Positives = 120/338 (35%), Gaps = 12/338 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           +P  I+  M++ +    +  +    AP+L AL+  +    +  S + +K     +  ++ 
Sbjct: 15  SPATIVLSMLLIVGFFIILTVGDILAPILWALVFAYLLESV-VSVLRRKGVPRIWAVLLV 73

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
               + L ++ +  L      +  +LV+++             L +      ++E  +  
Sbjct: 74  FAGFIGLVLIVVFGLIPLVWEQGAKLVAELPNIMTKVRESILELPEKYPNFVSTEQVSAF 133

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            ++  S        + +  +  +   A+          + II + + +FFF +D   I  
Sbjct: 134 FANLNSELAKWGEAILSASVSSLMSVAT--------VMVYIILVPLLVFFFLKDRRQIIS 185

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
                         + +   V + I +   G  +  +  G     A+ + G+   + LGV
Sbjct: 186 WCTQWLPQ-ERHLAEAVWSEVNQQIGNYIRGKVLEIVIVGTASYIAFLIMGLNYALLLGV 244

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGP 304
              +  +IP  GA +    V++    +    +   + +   + + I+D   L P +    
Sbjct: 245 CVGLSVLIPYIGAALVTIPVALIAFFQWGFTHDFYILIVVYLIIQILDGNLLVPLIFSEA 304

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           + L  +     ++      G  G+F    L  L+  + 
Sbjct: 305 VNLHPVAIIGSILLFGGLWGFWGVFFAIPLAILVNAVL 342


>gi|116334148|ref|YP_795675.1| permease [Lactobacillus brevis ATCC 367]
 gi|116099495|gb|ABJ64644.1| Predicted permease [Lactobacillus brevis ATCC 367]
          Length = 380

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/323 (13%), Positives = 110/323 (34%), Gaps = 16/323 (4%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEE----SSTFLAVIATVSVMCLFIVPLLFL 81
           FL   F P+L + ++ +   P+       + +    + T    I  + ++ + +   ++L
Sbjct: 39  FLSTIFIPLLLSGVLFYLLNPVVKLLEKIRWKKFHVNRTGAVAIVFLLLIGILVAGGVWL 98

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + ++  LV  +    +    V   L   P          +++   + L  +   F 
Sbjct: 99  IPRLVNQVSTLVGSIPDFAKSSEAVLAKLMKHP--------LLQNVDFSKYLNQIQSAFA 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMII---ALFFFYRDGFSISQQLDSLGEHLFPA 198
           K     F+    +  G +        +  I     LF+  +DG      +          
Sbjct: 151 KY-AEGFMSGLTTGIGAVIGTVTTVTVTAITVPVMLFYMLKDGERFMPAVQRWLPAKHAD 209

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              ++   + + I     G  +  +  G      Y L G+   + LGV + +  +IP   
Sbjct: 210 QTVELLSRMNQTIARYVGGQIVECLFVGTFTAIGYMLFGLKYALLLGVFSGLCNLIPYVG 269

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P      ++ +    +      + +   +   +    + P ++G  +++  L     L+ 
Sbjct: 270 PYIGILPALIVAFTISTNMVLYVVIVVVVVQQVDGNLVYPNIIGRSLQIHPLTIIIILLA 329

Query: 319 GVRTMGLLGLFIGPVLMALIAVI 341
                GL+G+ +   L A++  +
Sbjct: 330 AGNIAGLMGMILAIPLYAVVKTV 352


>gi|307700600|ref|ZP_07637632.1| putative membrane protein [Mobiluncus mulieris FB024-16]
 gi|307614245|gb|EFN93482.1| putative membrane protein [Mobiluncus mulieris FB024-16]
          Length = 458

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/294 (15%), Positives = 98/294 (33%), Gaps = 11/294 (3%)

Query: 50  SFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW 109
                +  ++   AV   V +  L       ++           + V  A      +  W
Sbjct: 138 RLQKWRFPNALSAAVSLIVGISAL----TAAIWVSVSQLASGAPALVRKAGGGFGKLMAW 193

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
           LSD P G+ + ++     +  + L  L E +  +         A       L+   +I  
Sbjct: 194 LSDEPLGLNSEDIDHYTKALSRQLGGLLEKYSSSIAS-----SAWSVTSSVLNLVAAIFI 248

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
            +  LFFF +DG  I      L    F     +        ++       ++A  + + +
Sbjct: 249 SVFCLFFFLKDGRRIWVWFMRLLPVPFREPVHEAGIRGWITLKGYIKAQAMVAGVDAVFI 308

Query: 230 GSAYWLAGVPSHVA-LGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAI 287
                  G  S    L ++  + + IP    +S  A+++ + L+   +  A  + +    
Sbjct: 309 SIGAAFLGAGSMTIPLALLIFLASFIPIVGAVSTGAIAVLVILLDQGLVKAIIMLVVILA 368

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
              I    L+P L+   + +  L     +  G     ++G  +   ++A +  +
Sbjct: 369 VQQIESNVLQPLLMSNAVNIHPLVVLLAITVGGYFASIIGALLAVPIVAFLNTV 422


>gi|254383382|ref|ZP_04998734.1| integral membrane protein [Streptomyces sp. Mg1]
 gi|194342279|gb|EDX23245.1| integral membrane protein [Streptomyces sp. Mg1]
          Length = 358

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 111/298 (37%), Gaps = 22/298 (7%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           P++   + +   S +  A +  ++V+ +       +    +    ++VS +V A Q    
Sbjct: 60  PMHRRLV-RMGVSRSLAAALTCLAVVAVVGGATYVVVGALIDTGDQIVSALVRAGQD--- 115

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
                         +E +    +  Q L   ++  L   G        +    +  +   
Sbjct: 116 -------------LAEHFGAAGTSLQDLASNAKELLAKFGGTAASGVITGI-SVVGEMIA 161

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           + I  ++ +FFF RD   I+  L +LG        + ++R     +     G T +A+ +
Sbjct: 162 TAILALVLIFFFLRDSHRIAGALRALGPRSAADTVEAMARRAFLAVEGFMRGTTFVALID 221

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
            + + +A     VP  + LG +  I A IP    I   AV++ L+   +      L++ G
Sbjct: 222 AVFITAALLALRVPGALGLGALVFITAYIPYLGAILSGAVAV-LVALADRGWVIGLWVLG 280

Query: 286 AI--ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAV 340
            +     +    L+P +    +++        +  G    G+LG+ +  P+  A   V
Sbjct: 281 VVLAVQMLEGYVLQPLIQSRTVQMHPAVVMLAITVGASVAGILGMLLAVPMTAAAFGV 338


>gi|284043193|ref|YP_003393533.1| hypothetical protein Cwoe_1731 [Conexibacter woesei DSM 14684]
 gi|283947414|gb|ADB50158.1| protein of unknown function UPF0118 [Conexibacter woesei DSM 14684]
          Length = 373

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/339 (14%), Positives = 115/339 (33%), Gaps = 17/339 (5%)

Query: 20  ILVSLYFLKGFFAPVLSALI---IGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           I++ LY +     P+  A I   +        + F         F   +  + V+ + + 
Sbjct: 24  IVLGLYLMYLLRKPLGWAAIACFVAVALSGPVAWFSRWM--KRGFAITVTLLLVLLVPVA 81

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +  +    + E   LV KV          P +  +    +  +E  T+        + +
Sbjct: 82  VMAIVIPPLVREGTHLVEKV----------PDYAREFDDYVNNNEKLTRLNEEYDITRKV 131

Query: 137 SETFLK-TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +      + I    +     G+ F++   + + + I   F    G    + L S     
Sbjct: 132 QDWANDLPSRIGDAAQLLGDVGVGFVNSIFAAVTIFIMTAFILGSGPRWVRMLLSFQPPD 191

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
               +      + + + +   G  + A+  G+       + G+P    L V TA+  +IP
Sbjct: 192 RQRRFAMTLERMSQAVGAYVAGALLQALIAGITTFIVLTILGIPFAAPLAVATALFDLIP 251

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             GA I    V I  +      +     +W  +   + +  ++P +    + +      F
Sbjct: 252 MVGATIGAVIVGIVTVFADFPLDTIIWVIWAIVYQQVENNLIQPRIQNRAVGIHPFGVIF 311

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            ++ G   +G+ G  +   + A + ++ K+      E +
Sbjct: 312 AVLCGGTLLGIPGAILAVPVAASLQILAKDLWQWRAERR 350


>gi|222150988|ref|YP_002560141.1| hypothetical protein MCCL_0738 [Macrococcus caseolyticus JCSC5402]
 gi|222120110|dbj|BAH17445.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 349

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/333 (16%), Positives = 115/333 (34%), Gaps = 6/333 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M + ++  + I+   +  I L+  YF+     P++ ALI+     P +   + +K ++  
Sbjct: 1   MFKRLMTKRNIVFLAVAVIALLFFYFIVPISIPLIVALILALMIEP-FVKLLEQKVKNRK 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +   I   S++   ++ +       +  + +    +     + +            M   
Sbjct: 60  WSVTIVYTSILSFILLCMYLFLTKLIQHIIQFSKDLPDKMNNILNAWTIFEARLAKMIPE 119

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +        Q         +      F     +       +  +S +  ++ALF F  +
Sbjct: 120 SVSNALFDETQKFLFNLRDAILNY---FNAERITNLVASLPETFISGLVFLVALFLFMLE 176

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
             ++   +              I + V   +        I++    L            +
Sbjct: 177 IPNMHTFVRKHTYDKTYEKAMYIWKRVSSSVFGMLRAAFILSGITWLFTFIGLLFITPKN 236

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            + L  I  ++ ++P  GA       ++Y  I G+   A  L L     L +  K L P 
Sbjct: 237 ALVLSFIICLVDLLPILGATGVTIPWALYAYITGDPSLAVKLILLSVFLL-VQRKVLEPK 295

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
           ++G  + L  LPT   +  G++ MG +G FIGP
Sbjct: 296 VMGKGVGLSPLPTLIAMFIGLKLMGFIGFFIGP 328


>gi|154506026|ref|ZP_02042764.1| hypothetical protein RUMGNA_03568 [Ruminococcus gnavus ATCC 29149]
 gi|153793525|gb|EDN75945.1| hypothetical protein RUMGNA_03568 [Ruminococcus gnavus ATCC 29149]
          Length = 385

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/337 (15%), Positives = 110/337 (32%), Gaps = 8/337 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFL----KGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M       Q  +  M   +   +   L     GF  P +   II   + P+ +    + +
Sbjct: 1   MERKRPYWQVAVSLMFSILATAAFIILGVKAIGFLMPFVVGWIISAIATPLVNWLEKRLK 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
                   +  + V+ L ++   F       E+ +L+              R + +   G
Sbjct: 61  IVKKLGTAMIVIMVIGLIVLVGYFAVSRIAAEVTDLIQNFPDIYAQLEEGMREIGNTLSG 120

Query: 117 MWASELWTKHLSHPQSLKILSETF--LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
            ++             ++ L      L +   +     A  F      Y +S I  I+A 
Sbjct: 121 AFSRLPRGVQNGWTTIVENLDTYMGNLVSKISEPTVTAAGNFAKRLPSYLISFIVAILAA 180

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           +FF      +      +           +   +   +   F     I     L+L + + 
Sbjct: 181 YFFTIQREEVIAWFHKIAPPSVEKRMILVMDNLKYAVGGYFKAQFKIMGVVFLILFAGFL 240

Query: 235 LAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
           + G+   V +  + + +  +P  G   +    +IY +  G       L +  A+   +V 
Sbjct: 241 VLGIHYAVLVAFLISFLDFLPFFGTGTALIQWAIYSVFIGEYKITAGLVIIYAVSQ-VVR 299

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           + L+P LVG  + +  L T   L  G +  G+ G+ +
Sbjct: 300 QLLQPKLVGDSMGMNPLVTLLLLYVGYKIKGVFGMIL 336


>gi|205374541|ref|ZP_03227337.1| hypothetical protein Bcoam_15781 [Bacillus coahuilensis m4-4]
          Length = 372

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/344 (14%), Positives = 128/344 (37%), Gaps = 12/344 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +++ + ++++Y++  +  P + A+ + +   PI +    +          ++ +
Sbjct: 11  RAIFLAVLIVLSVIAVYYIGKYTYPFIIAIGLAYILNPIVNFLEKRTRLPRGLAVFVSLI 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR---WLSDIPGGMWASELWTK 125
            ++  F   +  L    +   + L + +       +        +  IP     S ++  
Sbjct: 71  LIVSAFAGLITLLIAEIVNGAEYLSNVLPTHIDSFVTYIEDFVAMQIIPIYEQLSVMFNS 130

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL-------SIIFMIIALFFFY 178
             +  Q   + S     T     +  F  RF     +  L        ++F+ +A FF  
Sbjct: 131 LDTGQQDSIMDSIQNTGTAIATSMTDFIQRFFQALPNAVLWIPNTATVLVFIFLATFFIS 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D   + ++   +      ++ + I + + K +         +     L++     +  V
Sbjct: 191 KDWERLLEKTIHILPIKAQSHSRTIVQDLKKALFGFIQAQLTLITFTTLIVLIGLLILRV 250

Query: 239 PSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
              + + ++  ++ ++P  G         IY  + G+I     L +     + I  + + 
Sbjct: 251 EYAITIALVAGLVDLLPYLGTAAVIIPWMIYEFLTGDIRLGIGLAILYG-VVTIQRQLME 309

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           P ++   I +  L T   L  G + +G LGL +GPV + LI  +
Sbjct: 310 PKVLSSSIGIDPLATLVALFVGFKLVGFLGLILGPVTLVLITAL 353


>gi|326791068|ref|YP_004308889.1| sporulation integral membrane protein YtvI [Clostridium lentocellum
           DSM 5427]
 gi|326541832|gb|ADZ83691.1| sporulation integral membrane protein YtvI [Clostridium lentocellum
           DSM 5427]
          Length = 357

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 62/332 (18%), Positives = 116/332 (34%), Gaps = 5/332 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           ++I+ ++ + L +   F AP +SA +I F      +    +   + T +A+   +    +
Sbjct: 17  FIIIGMVFIVLKYGLPFIAPFVSAFVIAFLLNKPITFLAKRCHVNRTLIAIAIVLVFYSI 76

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             +    L     + +KEL S +       I             + S++    L      
Sbjct: 77  IGILFALLGIRLFVFVKELFSYLPNLYATEIQPFLMQLFDSLEHYISKMDVSLLPAMNEF 136

Query: 134 KILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                  L      F  +              + + I+F II+ FF   D   I+  L  
Sbjct: 137 SSNVVQSLGELISSFSMKMIGAISNYASSLPGFFIRILFTIISTFFLVIDYKKITAFLLH 196

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
             +        +I   V   +    L   +I       L     +  + + V +  + +I
Sbjct: 197 QLKDKHQKLMIEIKDYVVNTLFKCILSYALIMCITFAELSVGLSIIRIENAVLIAFVISI 256

Query: 251 MAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
             ++P  G        +I   ++GN   A  L +   I   I    L P +VG  + L  
Sbjct: 257 FDILPVLGTGGIMIPWTIIAALQGNYSLALGLLIVYIIITIIR-NILEPKIVGSQVGLHP 315

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           L T   L  G +  G+LGLF  P+ ++L+  +
Sbjct: 316 LVTLMSLFVGAQLFGVLGLFGLPITLSLLKNL 347


>gi|262283223|ref|ZP_06060990.1| membrane protein [Streptococcus sp. 2_1_36FAA]
 gi|262261475|gb|EEY80174.1| membrane protein [Streptococcus sp. 2_1_36FAA]
          Length = 374

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/329 (13%), Positives = 111/329 (33%), Gaps = 6/329 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +     P L A  + + + P+        + +     ++    +    ++ +++L    
Sbjct: 37  VVNTILIPFLIAGFLYYIANPLVVFLEKYLKLNRVLGVLLTLTILFGSIVLAVIYLLPIL 96

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  L   +  +      V  W++D+        L  +      +L  +    +  N 
Sbjct: 97  VTQLTSL---INSSQNLYSYVYSWVNDLAQNPVFKNLNIQSTLQQLNLSYID---ILRNI 150

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           ++ +           ++    II   I L +F  DG  +   L+             + +
Sbjct: 151 LNGVTNSLGSVVSAVINTIFIIIMTPIFLVYFLLDGHKLLPMLERSILKRDKLNISSLLK 210

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   +     G++I A+  G +    Y   G+   +   + +++  +IP   P      
Sbjct: 211 NLNATVSRYISGISIDAVIIGCLAYIGYSTIGIKYALVFAIFSSLANLIPYVGPSIGLIP 270

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            I      +        ++  I   I    L P +VGG +K+  +     L+      G+
Sbjct: 271 MIISHAFTDPKRMLIAVIYMLIVQQIDGNILYPRIVGGVMKVHPITIMVLLLLSSNIYGI 330

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKE 354
           +G+ +     ++I  I K        +KE
Sbjct: 331 IGMIVAIPTYSIIKEIVKFLANLYDNHKE 359


>gi|223936487|ref|ZP_03628399.1| protein of unknown function UPF0118 [bacterium Ellin514]
 gi|223895005|gb|EEF61454.1| protein of unknown function UPF0118 [bacterium Ellin514]
          Length = 374

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 75/238 (31%)

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
           + IP  +             Q L     +         I   A     +          +
Sbjct: 110 NQIPTAIDKIRHHLAQYPWGQKLIEPITSDDILPRARTILGQAKGIFSVTFTAITGFFLI 169

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           I    +   +          L         +++   V  +++   +G  +     GLV G
Sbjct: 170 IFIGLYLAMNARLHINGFIKLFPVNKRPRAREVLGDVGSLLQRWIIGQLVSMTIIGLVTG 229

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
                 GVP    LG +T  +  IP   P     +S+ L    +   A  + L      F
Sbjct: 230 IGLHFVGVPLAGILGFLTGFLDFIPLVGPFIAGTISVLLAFLMSPTKALYVLLLFVALQF 289

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           +    L P +     +LP + T   +V      G +G+ +   ++A+I V+ K+  + 
Sbjct: 290 LESHLLIPIVQKKAAELPPVLTLIAMVLFGSLFGFMGVLLATPMLAVIMVLIKKLYIE 347


>gi|322388018|ref|ZP_08061625.1| membrane protein [Streptococcus infantis ATCC 700779]
 gi|321141291|gb|EFX36789.1| membrane protein [Streptococcus infantis ATCC 700779]
          Length = 366

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/338 (14%), Positives = 113/338 (33%), Gaps = 8/338 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            II   +  +     P L    + + + PI      +   +     ++    +    ++ 
Sbjct: 29  AIITPFVSVVNTIMIPFLLGGFLYYLTNPIVIFLEKECRINRIIGILLTLCVLFGTIVIA 88

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +++L    + ++  L++           +   LS  P            +        LS
Sbjct: 89  VVYLLPILINQLSSLINSSQDIYSRIQDLVIELSKYPTFQELD------IQQTIQQLNLS 142

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              +  N ++ +           +   L II   + L +F  DG      L+        
Sbjct: 143 YVDILQNILNSVTNSVGSVLSALVSTVLIIIMTPVFLIYFLLDGHKFLPMLERTILKRDK 202

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-G 256
                +   + + I     G++I A   G +    Y + G+   +   + + +  +IP  
Sbjct: 203 LNISGLITNLNETISRYISGVSIDAFIIGCLAFIGYSVIGLKYALVFAIFSGLANLIPYV 262

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           G  I    + I  L   +        ++  I   +    L P +VGG +K+  +     L
Sbjct: 263 GPSIGLIPMIISNLFT-DPQKMIIAVIYMLIIQQVDGNILYPRIVGGVMKVHPITILVLL 321

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           +      G++G+ +     +++  I K  +   +++KE
Sbjct: 322 LLSSNIYGVVGMIVAVPTYSILKEISKFLLRLYEKHKE 359


>gi|225868492|ref|YP_002744440.1| membrane protein [Streptococcus equi subsp. zooepidemicus]
 gi|225701768|emb|CAW99160.1| putative membrane protein [Streptococcus equi subsp. zooepidemicus]
          Length = 384

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 106/295 (35%), Gaps = 5/295 (1%)

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             ++  +   +  + +   + + +L++ +    Q      + +    G          ++
Sbjct: 89  FCMLLAYFTFISLIVWIISIVIPDLIASISSLTQFDTRAIKEVISDLGHNKLIARAINYI 148

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL--DYCLSIIFMIIALFFFYRDGFSIS 185
                L      + +     FI         +       ++++   +   +       + 
Sbjct: 149 GGDAKLTETITNYSQQLLKQFIGVLTGILTSVTAVASAIINVVISFVFSLYVLASKEELC 208

Query: 186 QQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           QQ  +L +     Y K    +  ++    R  F+  T+ A+  G +     ++  +P   
Sbjct: 209 QQATTLIDTYTGKYAKTVHYLVSLLHSRFRGFFVSQTLEAMILGSLTAIGMFILQLPFAG 268

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            +GV+ A  A+IP        A+   L++  ++  A    ++  I   I    + P +VG
Sbjct: 269 TIGVLVAFTALIPVVGASIGAAIGFVLIMTQSMSQAVVFIVFLVILQQIEGNFIYPRVVG 328

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           G I LP +     +  G    G++G+ +   L A +  + K+ I   +  +++ S
Sbjct: 329 GSIGLPAMWVLMAITIGAALKGIVGMIVAVPLAATLYQVIKDHIHKKQALQDRQS 383


>gi|257875480|ref|ZP_05655133.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
 gi|257809646|gb|EEV38466.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
          Length = 412

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 55/334 (16%), Positives = 114/334 (34%), Gaps = 6/334 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F    FAPVL A  + +   PI    +   +    F  ++  + ++   I+  + +    
Sbjct: 81  FFSTLFAPVLIAGFLYYLLNPIVLFLMKTTKIKRLFAVILVLLLLVAAIILIFVSVIPNL 140

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  L   +    ++       ++D P            ++       LS   L    
Sbjct: 141 VSQITSLAENIPTFAKNMESWISRIADDPFFKQID------IAQQLENLNLSYGSLLQQF 194

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +               + I+ +   LF+  +DG  +   L ++           +  
Sbjct: 195 LSGLSTSLGSIVSTIASATMIIVTVPFILFYMLKDGEKLVPNLKTVFPERRREQIVGLLG 254

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K + +   G  I  I         YW+ GV      GVI  +  +IP   P      
Sbjct: 255 DLNKTLSNYISGQAIECIFVATFTFIGYWMIGVNYAFLFGVIAGVTNLIPYLGPYLGLIP 314

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +    F A    +   +   +    + P ++G  + +  L     L+      GL
Sbjct: 315 AVLVTVFDEPFRALLCCVVVLVVQQLDGNVIYPNVIGKSLAIHPLTIILVLLVAGNLAGL 374

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           LG+F+G    A+   I    +  IK++K K +  
Sbjct: 375 LGIFLGVPFYAICRTIVVFIVRLIKDDKIKKNQE 408


>gi|207091774|ref|ZP_03239561.1| membrane protein [Helicobacter pylori HPKX_438_AG0C1]
          Length = 323

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 61/334 (18%), Positives = 128/334 (38%), Gaps = 25/334 (7%)

Query: 35  LSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVS 94
           L A ++    + +      +        +++  + +  + IVPL F+ Y     + E+  
Sbjct: 4   LIAGLLCVGFFQVKVFLDKRFFN--IVSSLLCVLVLASVLIVPLYFIVYKSSNIIFEI-- 59

Query: 95  KVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFAS 154
                 +    + +WL         +E  +   +         E F   +   ++ + +S
Sbjct: 60  ----NFEKFSALIKWLKG-----TITENLSHFPTIHDGASKFLENFSAASITGYLLKISS 110

Query: 155 RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRST 214
             G   L      +F++  LFFF+  G    +    +   L     KKI   V  ++R  
Sbjct: 111 YVGRYSLKLITDALFILGLLFFFFYYGERFYRYFLGVLP-LGINQSKKIFEEVAGILRIV 169

Query: 215 FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKG 273
            L   I  I EG+  G      G      LG++  + +++P  G  + +  ++IY L  G
Sbjct: 170 LLTSLITVILEGVAFGVMIVWFGHDGWS-LGILYGLASLVPAVGGALIWIPIAIYELYHG 228

Query: 274 NIFNATCLFLWGAIELF-IVDKTLRPFLV--------GGPIKLPFLPTFFGLVGGVRTMG 324
           N+  A  + L+  + +  ++D  ++P L+           +K+  +  FF ++ G+   G
Sbjct: 229 NVNEAIFIALYSILLISVLIDSVIKPILIVFIKKRIFKTTLKINEMLIFFSMIAGISQFG 288

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G+ +GP + A    + +       +N +K   
Sbjct: 289 FWGIIVGPTITAFFIALLRLYENYFIQNDQKACE 322


>gi|261880587|ref|ZP_06007014.1| membrane protein [Prevotella bergensis DSM 17361]
 gi|270332706|gb|EFA43492.1| membrane protein [Prevotella bergensis DSM 17361]
          Length = 367

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/339 (15%), Positives = 129/339 (38%), Gaps = 13/339 (3%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +++  +     +L G   P   A +  +  +PI     +K +     L++I T+ ++ + 
Sbjct: 18  LLVIAVFYLFNYLSGALLPFAIAWLFAYLLYPIVRFIETKAKIRFRVLSIIITLLLVIVV 77

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           I  + +L    M+E  + +  ++    +       +S+     W SE  +++    + + 
Sbjct: 78  IGLITYLIIPPMIEQFQKLYDILNNWVNQTTHSNGISE-----WISEWVSENQKQIEGVL 132

Query: 135 ILSE-TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
              + T    + +  +     +   + +    S+I ++  +FF   D   ++     +  
Sbjct: 133 KSPDFTDAVKSAVPKVFNIVGQTASVVISVVASLIVLLY-MFFILLDYEYLAANWIRIFP 191

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                +W+++   V + + +   G  ++A+  G++    + +   P  + LG++  I+ +
Sbjct: 192 KKNRPFWQELMGDVARELNNYIRGQGLVALCMGIMFCIGFTIMDFPMAIGLGILIGILDL 251

Query: 254 IPGGAPISFTAVSIYLLI----KGNIFNATCLFLWGAIELFIV--DKTLRPFLVGGPIKL 307
           +P    ++    +   ++     G  F        G   +  +  D  + P ++G  + L
Sbjct: 252 VPYLHTLALVPTAFLAMLKSADTGQNFWVVFGLAVGLFIVVQIICDMVVTPKIMGKVMGL 311

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
                   L       G +GL I   L  LI   WK  +
Sbjct: 312 NPAILLLSLSVWGTIFGFIGLIIALPLTTLIIAYWKRYV 350


>gi|224025943|ref|ZP_03644309.1| hypothetical protein BACCOPRO_02689 [Bacteroides coprophilus DSM
           18228]
 gi|224019179|gb|EEF77177.1| hypothetical protein BACCOPRO_02689 [Bacteroides coprophilus DSM
           18228]
          Length = 376

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 58/350 (16%), Positives = 132/350 (37%), Gaps = 17/350 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G++   ++  IL  L  L G   P   A +I + ++P+   + ++    S  L+++A +
Sbjct: 14  RGVLSGAVIIAILYLLNRLSGVLLPFFIAWLIAYLTYPMVIFYQNRLRLRSRVLSILAVM 73

Query: 69  SVMCLFIVPLLFLFYYGMLE----MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
             + +        F   M+E    +KEL+   ++ +++   +P  +S+            
Sbjct: 74  LTLVVLGGIAFSFFVPPMIEECAKLKELIEIYLIEDRNHAAIPETVSEFIRKNIDFNWLQ 133

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
            +++    +  + +   K   +              +    ++  +I+ LFF   D   I
Sbjct: 134 NNITTDNIVSAIQKLLPKVWTL-------LSTSYNIILAIFTLFIIILYLFFILLDYEQI 186

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           +    +L    +     +++  +   +   F G  ++A   G++    + +   P  + L
Sbjct: 187 ANGWITLLPKKYQGMALRLTTDIKTSMNRYFRGQALVAFCVGILFSIGFLIIDFPLAIGL 246

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKG-----NIFNATCL-FLWGAIELFIVDKTLRP 298
           G+   ++ M+P    I F    +  L+K      + +    L  +  A+   I D  L P
Sbjct: 247 GLFIGLLNMVPYLQIIGFIPTILLALLKAADTGESFWWTLGLALVVFAVVQAIQDMILVP 306

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            ++G    L        L      MG+LG+ I      L+   ++  I  
Sbjct: 307 KIMGKITGLNPAIVLLSLSIWGSLMGMLGMIIALPGTTLLLSYYQRYIRK 356


>gi|284167020|ref|YP_003405299.1| hypothetical protein Htur_3764 [Haloterrigena turkmenica DSM 5511]
 gi|284016675|gb|ADB62626.1| protein of unknown function UPF0118 [Haloterrigena turkmenica DSM
           5511]
          Length = 376

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/334 (15%), Positives = 122/334 (36%), Gaps = 31/334 (9%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++  ++  + LV+   L      ++ AL + +   P+      +   S    AV AT+  
Sbjct: 14  VLAGIVALLGLVTGVILLDVLGTIMFALTVAYVLLPVQGWLHRR-GLSEWLSAVAATLLG 72

Query: 71  MC---LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
                    PL+   Y+   +++ +V +V               ++P  +          
Sbjct: 73  FLGTVAVFAPLVVALYFRFEQVQTIVEEVPR-------------EVPVAV---------- 109

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                   +    +++  ++ +   A  F        +     ++ LF       +  + 
Sbjct: 110 --AGYTHTIDVAEVRSLALESLGDVAVSFAAALPVLAIKFALFVMVLFALLLKADAAGRA 167

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
             +   H +      ++    + + + ++     +I    V    +WL G  +   +   
Sbjct: 168 AIAPVPHGYRDVVYALATRARETLYAIYVLQFATSIATLAVAYPLFWLLGYDAAFTIAFF 227

Query: 248 TAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWG-AIELFIVDKTLRPFLVGGPI 305
            AI+  IP  G  +    +++Y +  G +     + + G A+  ++ D  +RP L     
Sbjct: 228 AAILQFIPMIGPSLLIAPIALYHVAVGELVAGLLVGVLGMALVAWLPDIAVRPRLARRSA 287

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
            LP    F G  GG+ T+G +G+ +GP+++A+  
Sbjct: 288 GLPGSLYFVGFTGGLFTLGAIGVVVGPLIVAVFV 321


>gi|313837035|gb|EFS74749.1| conserved hypothetical protein [Propionibacterium acnes HL037PA2]
 gi|314929378|gb|EFS93209.1| conserved hypothetical protein [Propionibacterium acnes HL044PA1]
 gi|314971539|gb|EFT15637.1| conserved hypothetical protein [Propionibacterium acnes HL037PA3]
 gi|328907912|gb|EGG27674.1| putative membrane protein [Propionibacterium sp. P08]
          Length = 344

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/329 (17%), Positives = 122/329 (37%), Gaps = 14/329 (4%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            PV  AL++    WP+ +   S+        + I  + ++ L       +     L+ +E
Sbjct: 22  VPVAVALMLTAAMWPLANWL-SRHRIHRGIASGICLLLLIILVGGVFTLVGAQIALQWRE 80

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L ++ V + +  +   +WLS  P     ++L         +  +             I  
Sbjct: 81  LGNQSVASFKQAL---QWLSRSPLHTNKAQL---------TDLMHKAETAMAGSQGRIAS 128

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
            A+  G     +   ++  + A FFF  +G  ++++   L      A     ++     +
Sbjct: 129 TAAAAGTQIGRFSAGLVMALFATFFFVYEGDKLAEKSAVLIPREHRAKILDAAKRGWVAL 188

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLL 270
            +      I+A  +GL  G    + G    VA+G +T I+A +P  GA  +       +L
Sbjct: 189 VAYVRAAVIVAFVDGLGAGIGAAIIGSSMSVAIGALTFILAFVPIVGALTAGVVAVAVVL 248

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +    F A  + +     + I    L+PFL+G  + +  L    G+  G    G++G  +
Sbjct: 249 VTLGFFKALIMLIVFVAVMQIEGHILQPFLLGKAVSIHPLIVLLGIAVGAIISGIVGALL 308

Query: 331 GPVLMALIAVIWKESIMAIKENKEKISSN 359
              ++A      K        ++   + +
Sbjct: 309 AIPIVAFGVAFIKALNPETPADEVPPNHD 337


>gi|157150736|ref|YP_001450934.1| membrane protein [Streptococcus gordonii str. Challis substr. CH1]
 gi|157075530|gb|ABV10213.1| membrane protein [Streptococcus gordonii str. Challis substr. CH1]
          Length = 374

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/329 (13%), Positives = 111/329 (33%), Gaps = 6/329 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +     P L A  + + + P+        + +     ++    +    ++ +++L    
Sbjct: 37  VVNTILIPFLIAGFLYYIANPLVVFLEKYLKLNRVLGVLLTLTILFGSIVLAVIYLLPIL 96

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  L   +  +      V  W++D+        L  +      +L  +    +  N 
Sbjct: 97  VTQLTSL---INSSQNLYSYVYSWVNDLAQNPVFKNLNIQSTLQQLNLSYID---ILRNI 150

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           ++ +           ++    II   I L +F  DG  +   L+             + +
Sbjct: 151 LNGVTNSLGSVVSAVINTVFIIIMTPIFLVYFLLDGHKLLPMLERSILKRDKLNISSLLK 210

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   +     G++I A+  G +    Y   G+   +   + +++  +IP   P      
Sbjct: 211 NLNATVSRYISGISIDAVIIGCLAYIGYSTIGIKYALVFAIFSSLANLIPYVGPSIGLIP 270

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            I      +        ++  I   I    L P +VGG +K+  +     L+      G+
Sbjct: 271 MIISHAFTDPKRMLIAVIYMLIVQQIDGNILYPRIVGGVMKVHPITIMVLLLLSSNIYGI 330

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKE 354
           +G+ +     ++I  I K        +KE
Sbjct: 331 IGMIVAIPTYSIIKEIVKFLANLYDNHKE 359


>gi|154686617|ref|YP_001421778.1| hypothetical protein RBAM_021860 [Bacillus amyloliquefaciens FZB42]
 gi|154352468|gb|ABS74547.1| hypothetical membrane protein [Bacillus amyloliquefaciens FZB42]
          Length = 360

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/317 (15%), Positives = 115/317 (36%), Gaps = 10/317 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I F+    +  +K  F P++ + ++ +   P+     +K +       +        L
Sbjct: 24  TLIDFLFQPVVITVKTLFPPIVLSGVLYYLCRPLVRLLHAKLKLPEGIAILAIYAGTAGL 83

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           F++ L         +       +   +        W+  +         W   L H  S 
Sbjct: 84  FVLFLYTAGPAVQKQFTAFTDHIPELS---AKAENWIGHL-----QDSKWFSRLQHGDSF 135

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           K L++     +G   I    S       +  ++   +  AL++  ++G    ++L  L  
Sbjct: 136 KKLADKAANYSGS--IADSLSSLAGTAANAAITAAIIPFALYYMLKEGNKAPRRLLQLLP 193

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  K+I R + + + S   G  +++   G+++   Y++ G+   + LG    +  +
Sbjct: 194 EKHQKEGKQILRDMDEALSSYIQGQLLVSFCVGVLVTIGYFIIGLDYPLVLGAFAMVTNL 253

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P   T   + + +  +   A  +     I   +  + + P ++G  + +  L   
Sbjct: 254 IPFIGPWIGTFPGVIVGLFDSPTEAVLVITVVVIVQQLESQLISPQIMGRKLDIHPLTII 313

Query: 314 FGLVGGVRTMGLLGLFI 330
           F L+   +  G+ G+ +
Sbjct: 314 FLLLAAGKFSGIAGMLL 330


>gi|288553204|ref|YP_003425139.1| hypothetical protein BpOF4_00890 [Bacillus pseudofirmus OF4]
 gi|288544364|gb|ADC48247.1| hypothetical protein BpOF4_00890 [Bacillus pseudofirmus OF4]
          Length = 352

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 115/325 (35%), Gaps = 2/325 (0%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + + LV+ YF+     P+++AL+      P  ++   K +       ++     +    +
Sbjct: 16  ILLFLVAAYFILPVSLPLVAALLTALILTPAVNALQRKTKIKRNVAVMLVFTVFVVFIGL 75

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
              ++    + +  ++V                        + +           ++   
Sbjct: 76  SGYYIATKAITQGTQIVENSPQYISDINRAWLNFQRNLEEKYENLPPELVQEINITVTNT 135

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                       + +  +        Y ++ +  +IALF F  +   + ++L S      
Sbjct: 136 LSDLRSNISDRNLIQDITSLISSIPGYLVTFLVYLIALFLFMLELPRLREKLYSYLSERT 195

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
                 ++  +  VI   F    +++I   +V             + +  I  ++  +P 
Sbjct: 196 KEKVNFMTSRLSYVIWGFFKAQFLVSIIIFIVTLIGLLFIAPEVALLMAFIIWLIDFVPI 255

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ +     +I+ LI G++   + L +  A  L I+ +T+ P ++G  I L  L T   
Sbjct: 256 IGSIVILAPWAIFQLIVGDVSTGSKLLIL-AAVLLIIRRTVEPKVMGKHIGLSPLATLIA 314

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAV 340
           +  G+   G++G  IGP+L+     
Sbjct: 315 MYLGLMLFGVIGFIIGPLLVIAFTS 339


>gi|281423598|ref|ZP_06254511.1| putative membrane protein [Prevotella oris F0302]
 gi|281402418|gb|EFB33249.1| putative membrane protein [Prevotella oris F0302]
          Length = 368

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/338 (15%), Positives = 126/338 (37%), Gaps = 17/338 (5%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L  FF     A    +  +P+     +K       ++++ T+ ++   I  + +L    
Sbjct: 33  VLLPFFIAWFMA----YLLYPVVQFIENKLHIRVRAISILLTMLLVISVIGGVFYLIIPP 88

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE-TFLKTN 144
           M+E  + +  V++   H       L++     + SE    +  H +      +      +
Sbjct: 89  MIEQFDKLQTVLMRWVHHTTHTNNLTN-----YISEWIQANQEHIERFFKSKDFGDTIKS 143

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            +  +  F S+   + L    S I ++  +FF   D   ++     +       +W+++ 
Sbjct: 144 AMPKLFSFVSQTASVILSIIASAITLLY-MFFILLDYEYLTTNWIRIFPKKNRPFWQELL 202

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
           + V + + +   G  ++A+  G++    + + G P  + LG++  I+ ++P     +   
Sbjct: 203 QDVKRELNNYVRGQGLVALCMGIMFCIGFTIIGFPMAIGLGILIGILDLVPYLHTFALIP 262

Query: 265 VSIYLLI----KGNIFNATC--LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            +   ++     G  F        L   +   I D  + P ++G  + L        L  
Sbjct: 263 TAFLAMLKAADTGQNFWIVFGLALLVFIVVQAITDFIVTPKIMGKAMGLNPAILLLSLSI 322

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
               +G +GL I   L  L+   W+  I   ++ + K 
Sbjct: 323 WGALLGFIGLIIALPLTTLLIAYWQRYITKEEQGQNKP 360


>gi|220930732|ref|YP_002507641.1| sporulation integral membrane protein YtvI [Clostridium
           cellulolyticum H10]
 gi|220001060|gb|ACL77661.1| sporulation integral membrane protein YtvI [Clostridium
           cellulolyticum H10]
          Length = 353

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 58/332 (17%), Positives = 128/332 (38%), Gaps = 5/332 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + ++   I  +I +S+ +L  FFAP + ALI+ + + P+    + K + S    A I+ 
Sbjct: 12  KKILLILFIFALIYLSITYLLPFFAPFIIALIVSYINEPV-IKLLLKFKISRKSAAAISL 70

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  M +    +         E+  L   +   +         L D     +         
Sbjct: 71  LFTMSVLGFGITVGIIKIYNELTILQDNLTAYSSDISGKINGLIDKATLFYNGLPDQVTN 130

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +  ++L+  SE          I ++            + +I  I+  +F   D  SIS  
Sbjct: 131 TITKNLESFSEQLGTMIAS--IIQYVINTVSSIPRLTVFVIVTILGTYFISSDRKSISSF 188

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                   +      + +   K +   F  + I+     L + +  ++  V     + +I
Sbjct: 189 FYRQLPFSWRKNIVSLKKDTFKALIGYFKAILILMGFTFLEVSAGLFILNVKYAFLIALI 248

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             +   IP  G  +      ++ +I G++  A  L +   + + ++ + + P +VG  I 
Sbjct: 249 VGLSDAIPIVGTGVVMVPWILWTIITGDMPLAFGLGIIYVLGI-LIRQIMEPKIVGSQIG 307

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           L  L T   +  G++  G++G+F+GP+ + ++
Sbjct: 308 LHPLVTLLAMYIGLKFFGIIGMFVGPISIIVV 339


>gi|225027992|ref|ZP_03717184.1| hypothetical protein EUBHAL_02261 [Eubacterium hallii DSM 3353]
 gi|224954706|gb|EEG35915.1| hypothetical protein EUBHAL_02261 [Eubacterium hallii DSM 3353]
          Length = 382

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/342 (14%), Positives = 129/342 (37%), Gaps = 12/342 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++ + I  ++++ +  L GFF P +++ I+   + P+ +      + +  + + +  V
Sbjct: 13  ETVIFFGIAVLLIIGIPKLMGFFWPFVASWILALLATPLCNFLEKHIKLNKKWSSAVIIV 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKV----VLANQHGIPVPRWLSDI--PGGMWASEL 122
            V+                E+  L S      V   +        L++I  P      + 
Sbjct: 73  LVLLALAGIGYLAVTKLGRELMGLFSGAPEYYVYVQRTIKSFGDSLTNIVSPISSDFGKQ 132

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                +   S            G++ +   A+     F    +  + MII+ +FF  D  
Sbjct: 133 IQGFFTDFLSQMGGIINKFAPKGVEMMGSAAADLTNGF----IGTVVMIISAYFFIADRE 188

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +++    +      +  + I   V   +    L    I     ++L + ++L G P  +
Sbjct: 189 RLTEGFWRIVPEDLKSTVRDIKDKVIAALGGFLLAQFKIMCIVFVILLAGFFLMGNPYAL 248

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L ++ + + ++P  G        +++  ++ +   A  L +   + L +  + L+P ++
Sbjct: 249 LLALVISFVDLLPILGTGTILIPWTLFCFVQRDYRQAMFLIILYVVCL-VARQFLQPKMI 307

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              + L  + T   +  G +  G+ G+ +  +   +I  +++
Sbjct: 308 ADSMGLDSMATLVLIYTGYKLNGMKGMILALLAGVIILSLYR 349


>gi|229586979|ref|YP_002845480.1| Permease PerM-like protein [Rickettsia africae ESF-5]
 gi|228022029|gb|ACP53737.1| Permease PerM-like protein [Rickettsia africae ESF-5]
          Length = 356

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 57/355 (16%), Positives = 123/355 (34%), Gaps = 7/355 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           MR+ ++N   I   + + + +     +     P   A II +   P      SK + S+ 
Sbjct: 1   MRKIIMNRTVIFWLVFLGLFISGFMLISDAVKPFFIAFIISYLLQPAIGFITSKFKISNK 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           F + I  +  + +F + L  L      ++   ++ +   N +          +P  M   
Sbjct: 61  FASSIIYLIFLSIFFLSLTILVPIIYGQIFTFINNIPKYNNYLQAEI-----LPPIMVKI 115

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                 ++      + +        +  I     R+ +I ++  +  + + I LF+F RD
Sbjct: 116 YSIEPDIADKIKNSLSNFINSIFTILGSIANNFWRYTIITINIFVLFLLIPIILFYFLRD 175

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   + SL          +I   +  ++ +   G   I +        A+ + G+  
Sbjct: 176 WAKIIANMKSLLPIKTRPKILEILSAINNLLSAYIRGQLNICLLLSTYYSIAFTVIGIDL 235

Query: 241 HVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + LG++T  + +IP           + I  L  G       + +   +          P
Sbjct: 236 ALLLGILTGFLVIIPFLGTFISFLLTLIIGYLTFGVTTKLLYIMIIYLVGNICESYIFTP 295

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            ++G  I L  L   F +       G++G+F    +  +  ++    I   K +K
Sbjct: 296 KIIGDKIGLHPLWIIFSIFACGSLFGIIGIFFAIPIAGITKILLLNLIKFYKSSK 350


>gi|187779547|ref|ZP_02996020.1| hypothetical protein CLOSPO_03143 [Clostridium sporogenes ATCC
           15579]
 gi|187773172|gb|EDU36974.1| hypothetical protein CLOSPO_03143 [Clostridium sporogenes ATCC
           15579]
          Length = 369

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/320 (16%), Positives = 114/320 (35%), Gaps = 9/320 (2%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P + A  I +   P+   F +K +    F  +I  + V+ L I+ +       +  + 
Sbjct: 48  LVPFIWAFGIAYILNPLMKYFQNKFKLKRIFSIIITYIIVIGLLILFINTFVPKIIKNIG 107

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           +L +         I   +W +D        ++  ++     ++  L      +N  +   
Sbjct: 108 DLFAHSPDYINQTI---QWFNDNIKYSKVYDMLMENSQISNNIPSLLNKI--SNLTNTFI 162

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK----KISRI 206
                  + F  + +  +F +I   +   D  S+ + L      L             + 
Sbjct: 163 NTFLNTTIKFTSFLVKFVFGLIISIYLLLDKESLIENLKKFILALSGEKNYSKILSFFKE 222

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           V  V     +G +I ++  GL+  +   +  VP    +  I  I  MIP   P      +
Sbjct: 223 VDMVFSKYIIGKSIDSLIIGLMCFAGLTIMKVPYAALISFIVGITNMIPYFGPFIGMIPA 282

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
             + +  N   A  + ++  I        L P ++G  + L  +   F +  G  T G++
Sbjct: 283 FIITLFFNYIKAIWVLIFIVILQQFDGWYLGPKILGNQVGLSPIWIIFAITIGGGTFGVM 342

Query: 327 GLFIGPVLMALIAVIWKESI 346
           G+F+   + A+I +   + I
Sbjct: 343 GMFLSVPIAAIIKIYLDKYI 362


>gi|268609433|ref|ZP_06143160.1| hypothetical protein RflaF_08041 [Ruminococcus flavefaciens FD-1]
          Length = 410

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/346 (12%), Positives = 119/346 (34%), Gaps = 11/346 (3%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPI----------YSSFISKKEESSTFLAVIATVS 69
           +L  +    G+F+ V+    I +   P+             F  K     +F   +A  +
Sbjct: 35  VLGGIGTFIGYFSTVIGGAAIAYLMNPLAKLYEKKIFSKIKFFKKDTTKWSFSVGLAVTT 94

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+   ++ ++ L    +  +   VS +       + +             +      L+ 
Sbjct: 95  VLLFLMMIIITLIPQLLESITNFVSNLGSYASSLLKLLNDFGLSFSESPNASGVQNLLNS 154

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            + +      ++  N    I   ++  G   +++ ++ I  +  L    R      + ++
Sbjct: 155 SEDIINTIVDYISDNSSKIISA-STSAGKGVVNWLVAFIISVYLLAAKDRLKTGAKRFMN 213

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +  +                ++    +   I  +  G        L G+     + V+  
Sbjct: 214 AAMKKDVYDSSLTFLTRCNDILNRYIIFDLIDGLIVGATNAVFMALFGMQYVGLVSVVVG 273

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  ++P   P+    + +++L+    ++A    ++  +   +    ++P L G    +  
Sbjct: 274 VTNLVPTFGPLVGGVIGVFILLMVKPWHAVIFLIFTLVLQTLDGYVIKPKLFGNTFGVSG 333

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L     +V G +  G+LG+ +     A+   +++E ++   E K K
Sbjct: 334 LLILLAIVIGGKMFGILGILLAIPFAAICDYVYREIVIPQLEKKRK 379


>gi|312874325|ref|ZP_07734356.1| putative membrane protein [Lactobacillus iners LEAF 2052A-d]
 gi|325911463|ref|ZP_08173875.1| putative membrane protein [Lactobacillus iners UPII 143-D]
 gi|325913113|ref|ZP_08175483.1| putative membrane protein [Lactobacillus iners UPII 60-B]
 gi|311090091|gb|EFQ48504.1| putative membrane protein [Lactobacillus iners LEAF 2052A-d]
 gi|325476813|gb|EGC79967.1| putative membrane protein [Lactobacillus iners UPII 143-D]
 gi|325477534|gb|EGC80676.1| putative membrane protein [Lactobacillus iners UPII 60-B]
          Length = 380

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 61/337 (18%), Positives = 120/337 (35%), Gaps = 4/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F++   L F+      V+ A +  +   PI      K         +   + V+ + I
Sbjct: 43  IAFLLTPVLTFVNAIMPAVILAGVQYYLMNPIVDCLEQKYRIPRIVTILALFIVVLIILI 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + +  L      + K L+         G    R L   P            +S+ QS+  
Sbjct: 103 LIINTLLPVIEAQTKSLIDHWPSYWDSGQEALRHLLHDPRLDGIRSDLNDAVSNAQSILF 162

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +         +           +     ++++     LFF  +DG  I+  L S     
Sbjct: 163 NT----GKASFNLFLENLFGAVNVISMLIVTLLTAPFILFFMLKDGKKINPYLTSFMPPR 218

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
               + K+   +   + S   G  I+A   G++    Y   G+   + L ++ A + +IP
Sbjct: 219 LQNVFSKLLHDINIAVSSYVRGQLIVAFWVGVMFAVGYTTIGLKYGLTLAILAACLNLIP 278

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
               +     +I + I  +      +F+   IE  I  + + P ++G  +K+  + T   
Sbjct: 279 YFGTLISLIPAIIIGILDSPVMLLKIFVVFFIEQLIEGRFISPLVMGSKMKMNPVTTILL 338

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+G     GLLG+     + A I +I  +     ++N
Sbjct: 339 LIGANSVAGLLGVIFAIPIYAGIKIIVVQVFDYYRKN 375


>gi|317051128|ref|YP_004112244.1| hypothetical protein Selin_0950 [Desulfurispirillum indicum S5]
 gi|316946212|gb|ADU65688.1| protein of unknown function UPF0118 [Desulfurispirillum indicum S5]
          Length = 366

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 58/356 (16%), Positives = 118/356 (33%), Gaps = 12/356 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
            +   NPQ  +  + + I    + F+     P  +A+II +    +      +     T 
Sbjct: 10  DDHFSNPQVAILAIALIIGFSVVIFMGNILMPFFAAIIIAYLLDGLVQKLC-RLGIPHTP 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A++  V  M  F+  L  +      ++ +L  ++ L    G      L  +P       
Sbjct: 69  AAILVFVVFMGAFLFLLFAIVPMIARQLTQLAREMPLMINMGQQA---LMRLPEMYPEFI 125

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              +  ++   +      F +      +    S        + + +I + + +FFF +D 
Sbjct: 126 SQQQVRNYINLMTSEVGKFSQQILSWSLASVTSIIA-----FLVYLILVPLMVFFFLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + Q   S      P     +   V   I S   G  +  I    +  + + + G+   
Sbjct: 181 EHLIQWFSSFLPENRPL-MNLVWSEVNIKIASYVRGKAMEIIIVWAISYATFAIMGLDFA 239

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L ++  I  +IP  GA +    ++    ++ G       L +  AI  F     L P 
Sbjct: 240 LLLAMLVGISVLIPYVGATVVTIPIAFIAYVQWGFTSQFAYLMIAYAIIQFFDGNILVPI 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L    + L  +     ++      G  G+F    L  LI  I           +++
Sbjct: 300 LFSEVVNLHPIAIVTSILVFGGLWGFWGIFFAIPLATLIQSIIGAWPNKEVIQEQE 355


>gi|229086022|ref|ZP_04218243.1| hypothetical protein bcere0022_26220 [Bacillus cereus Rock3-44]
 gi|228697232|gb|EEL49996.1| hypothetical protein bcere0022_26220 [Bacillus cereus Rock3-44]
          Length = 376

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 121/326 (37%), Gaps = 5/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + FLK  F PVL A ++ +   P + S + +K  S         + VM LF+
Sbjct: 44  ISFVFTPFIVFLKTIFFPVLLAGVLFYILHP-FVSLLERKGVSRIVSIASIYIFVMGLFV 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             ++ +      ++  L+  +           R      G         + L+      +
Sbjct: 103 FLVVTVIPIMKDQINALIDNLPYFGHEIERAARRF----GESNIIGKIQESLNIDVGSIV 158

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   TN +  +    + F     +  L+ + +   LF+  +DG  + +         
Sbjct: 159 KDSTMNFTNSLSSVTGNVTGFLSTLTEVVLTFVMVPFILFYLLKDGEQLPKYFLRAISEQ 218

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                K I   +   I S   G  I+++  G++L   Y + G+   V L V+  I+ ++P
Sbjct: 219 RQPAAKLILDDMHYAISSYIRGQIIVSLFIGIMLLIGYVIIGIKYAVLLAVLAMIVNVVP 278

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI     ++ +    +      + +   I      K + P ++G  + +  +   F 
Sbjct: 279 YVGPIIAIIPALIIAFIDSPAMIVKVIIVMMIVQLAEGKFISPQVMGKKLDIHPITIIFI 338

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++      G++G+ +     A++ V+
Sbjct: 339 ILTAGNLFGMMGIILAIPGYAILKVL 364


>gi|306817796|ref|ZP_07451537.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|304649445|gb|EFM46729.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
          Length = 458

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 97/294 (32%), Gaps = 11/294 (3%)

Query: 50  SFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW 109
                +  ++   AV   V +  L       ++           + V  A      +  W
Sbjct: 138 RLQKWRFPNALSAAVSLIVGISAL----TAAIWVSVSQLASGAPALVRKAGGGFGKLMTW 193

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
           LSD P G+ + ++     +  + L  L E +  +         A       L+   +I  
Sbjct: 194 LSDEPLGLNSEDIDHYAKALSRQLGGLLEKYSSSIAS-----SAWSVTSSVLNLVAAIFI 248

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
            +  LFFF +DG  I      L          +        ++       ++A  + + +
Sbjct: 249 SVFCLFFFLKDGRRIWVWFMRLLPVPLREPVHEAGIRGWITLKGYIKAQAMVAGVDAVFI 308

Query: 230 GSAYWLAGVPSHVA-LGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAI 287
                  G  S    L ++  + + IP    +S  A+++ + L+   +  A  + +    
Sbjct: 309 SIGAAFLGAGSMTIPLALLIFLASFIPIVGAVSTGAIAVLVILLDQGLVKAIIMLVVILA 368

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
              I    L+P L+   + +  L     +  G     ++G  +   ++A +  +
Sbjct: 369 VQQIESNVLQPLLMSNAVNIHPLVVLLAITVGGYFASIIGALLAVPIVAFLNTV 422


>gi|288931196|ref|YP_003435256.1| hypothetical protein Ferp_0813 [Ferroglobus placidus DSM 10642]
 gi|288893444|gb|ADC64981.1| protein of unknown function UPF0118 [Ferroglobus placidus DSM
           10642]
          Length = 330

 Score = 84.9 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 57/332 (17%), Positives = 120/332 (36%), Gaps = 19/332 (5%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I+ + +  +  +      +   + + + S PI   F  K         V++      + +
Sbjct: 13  ILSVFITVILLISPLLDGIAMGVALAYASKPIMRKFERKLPL------VLSAFIATLIIV 66

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +PL F+F+YG+ +   L   +++ +       +  + +     + +   K   +  +L  
Sbjct: 67  LPLFFIFFYGLFQG--LYQLLLIFSDFQNFFEKIFTTLREFGVSEDYIQKLREYVPTLYS 124

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                                   F+ + L+     I  F+   DG    ++L S     
Sbjct: 125 FV--------SQKFSVSVVSLTAKFIMFLLNFFLSSIVCFYALLDGDRFVRKLLSALPEE 176

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +    V  +    + G  + AI    +    +    +P    L  +  + A+IP
Sbjct: 177 NRKIASEFFEEVDSIFTGLWFGNLVFAIIIAFISLPFFIAFNIPYTPLLVGLMFLAAIIP 236

Query: 256 GGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIKLPFLPTF 313
             A  +    V+IYL    ++++A    + G + L+I+ +  +RP  VG   K+  L   
Sbjct: 237 IFAEWMVIAPVAIYLF-TVDVYSAIYFTVIGVVFLYIIPELFIRPQFVGYASKIHPLVLL 295

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
              +GG    G+ G FI P+L  +   I+   
Sbjct: 296 LSFIGGGLFGGIAGFFIAPMLAGIATAIYNHF 327


>gi|295699526|ref|YP_003607419.1| hypothetical protein BC1002_3896 [Burkholderia sp. CCGE1002]
 gi|295438739|gb|ADG17908.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1002]
          Length = 688

 Score = 84.5 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/352 (13%), Positives = 113/352 (32%), Gaps = 25/352 (7%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G++ +++  I +  LYF      P+  A+++ F   P+  +    K       +V A V
Sbjct: 26  EGLVTFVVAVIAVACLYFASAVMIPITLAILLSFLVAPLADALCRLKLGH--VASVCAAV 83

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL-------------SDIPG 115
            +    I  L  +    + ++   + +     QH +     L               +  
Sbjct: 84  LISVSVIALLCAVIATQLTDLAAGMPRYQATIQHKLDTVHSLTIGKLNRFASEAGQALQR 143

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR---FASRFGMIFLDYCLSIIFMII 172
                           +    + T +     + +P     A R     +    +   + +
Sbjct: 144 ATIEPPQLRAPNGAAAATSPQASTAVPVEVREPVPTPFELARRVLSPAISPLETAFIVFV 203

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
                      +  +   L           +     + +   F+    +  G G+V+G+ 
Sbjct: 204 VTIVILLQRDDLRDRAIRLFGSRDLHRTTTVMDETARRLSRYFVSQLGVNTGVGVVIGAG 263

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
             L GVPS +  G++ A++ ++P      + A  +   +   +     + +W  +   + 
Sbjct: 264 LLLIGVPSPILWGILAALLRLVPYVG--IWIAAILPTALAAAVSPGWEMAIWSLVLFVVA 321

Query: 293 D----KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIA 339
           +    + + P L G    L         +      G +GL +  P+ + L+ 
Sbjct: 322 ELAVGQVVEPLLYGRSTGLSPFSVVVAAIFWSWIWGPIGLILSTPLTLCLLV 373


>gi|307329219|ref|ZP_07608384.1| protein of unknown function UPF0118 [Streptomyces violaceusniger Tu
           4113]
 gi|306885118|gb|EFN16139.1| protein of unknown function UPF0118 [Streptomyces violaceusniger Tu
           4113]
          Length = 401

 Score = 84.5 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/348 (15%), Positives = 117/348 (33%), Gaps = 22/348 (6%)

Query: 8   PQGIMRWMIMFIILVSLYFLK--------GFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           P+ + R M++ + LV+ Y L         G    +L A  +     P      ++     
Sbjct: 33  PRWLPRAMVLALALVACYRLATWAFDRLTGLLLNILIAFFLALAIEPAVDRMAAR-GMRR 91

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
                +  ++++         L      ++  +V        +   V RW++D      +
Sbjct: 92  GLATGLVFLAILIGTAGFFTLLGSMLADQIITMVQDFPQYLDN---VVRWINDTFHTHLS 148

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                  L H   L    ++++K +  + +   A   G +F    +++       F+F  
Sbjct: 149 RLEIQDSLVHSDWL----QSYVKNSADNVLDVSAQVLGGLFKVLTVTLF-----AFYFAA 199

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  + + L S+          +   I             ++A+  G+         GVP
Sbjct: 200 DGPRLRRALCSVLPPTRQVEVLRAWEIAVAKTGGYIYSRGLMALISGVAHYILLEALGVP 259

Query: 240 SHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              AL V   +++  IP        A+ + +    + + A  + ++  I     +  L+P
Sbjct: 260 YAPALAVWVGLISQFIPTIGTYLAGALPMLIAFTIDPWYALWVLVFVVIYQQFENYLLQP 319

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            +    + +    +F  ++ G   +G +G  I     A +       I
Sbjct: 320 RITARTVDIHPAVSFGSVIAGTALLGAVGALIAIPATATLQAFLGAYI 367


>gi|325955134|ref|YP_004238794.1| hypothetical protein Weevi_1516 [Weeksella virosa DSM 16922]
 gi|323437752|gb|ADX68216.1| protein of unknown function UPF0118 [Weeksella virosa DSM 16922]
          Length = 417

 Score = 84.5 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/338 (11%), Positives = 119/338 (35%), Gaps = 18/338 (5%)

Query: 11  IMRWMIMFIILVSLYFL----KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           +++   + + LV+L+++    K    P++   ++     PI +    K        ++++
Sbjct: 27  VVKLACVLVSLVTLFYISIVGKSIIVPLIIGFLLSMVLLPIANFLERKLRFPRIVSSLLS 86

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +  + + +  +  L    +    EL               +++++       +    + 
Sbjct: 87  PIMFVLVVLGVMFLLGTQIVQFQNELPELQKQLIDLFHKTQQFIAE-----QFNVTEQEQ 141

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           L++ +     +         D +    +  G        S+   +   FF       +++
Sbjct: 142 LNYLKKNTESTIKHGGAVVGDVVSTMTTVIGS-------SVFVFLYTFFFLLYRSH-LTK 193

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +            + +   +  +I+   +G+ I      + L +A+ + G+        
Sbjct: 194 FIVWCFPPSEQKKVRNVVSSIQSIIKQYIVGLGIQITFITVALFTAFSIIGIKYAFFFAA 253

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +  ++ +IP  G   +    ++  L      NA  + +   +   I    L P ++G  +
Sbjct: 254 LCGLLNLIPYIGIFSATVLATLVTLATNEPINALWVVISVIVVNSIDGNILTPKVIGSKV 313

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L      FG++      G+ G+F+   ++A+  +++ 
Sbjct: 314 SLNSFVVLFGIIVAESIWGMAGMFLAIPILAIARIVFD 351


>gi|322385892|ref|ZP_08059534.1| membrane protein [Streptococcus cristatus ATCC 51100]
 gi|321270071|gb|EFX52989.1| membrane protein [Streptococcus cristatus ATCC 51100]
          Length = 387

 Score = 84.5 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 112/335 (33%), Gaps = 8/335 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +     P +    + + + P+ +    K + +  F  +I  + +  L  V +++L    
Sbjct: 50  VINTILIPFVMGGFLYYITNPLVTLLEKKLKINRIFGILITLLLLFGLVTVGVIYLLPIL 109

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  L++               LS  P           ++        LS   +  N 
Sbjct: 110 INQLSSLINSTQNLYWEIQSFVNQLSKNPLFKSL------NIQSTIQQLNLSYVDILQNI 163

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           ++ +           ++  + +I   I L +F  DG  +   L+             +  
Sbjct: 164 LNSVTNSLGSVVSAVINTLMILIMTPIFLVYFLMDGHKLLPMLERTVLKRDKLNISTLLT 223

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTA 264
            +   +     G++I A+  G +    Y + G+   +   + +A+  +IP  G  I    
Sbjct: 224 NLNATVARYISGISIDALLIGTLAYIGYSVIGLKYALVFAIFSALANLIPYVGPSIGLIP 283

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           + I      +        ++  I   I    L P +VG  +K+  +     L+      G
Sbjct: 284 MLITYFFT-DPHKMLEALIYMLIIQQIDGNILYPRIVGSVMKVHPITIMVLLLLSSNIYG 342

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           ++G+ +     +++  I K        +KE     
Sbjct: 343 IMGMIVAIPTYSILKEIVKFLANLYDNHKEAQQQK 377


>gi|227876851|ref|ZP_03994960.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
 gi|269977828|ref|ZP_06184785.1| integral membrane protein [Mobiluncus mulieris 28-1]
 gi|227842748|gb|EEJ52948.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
 gi|269933998|gb|EEZ90575.1| integral membrane protein [Mobiluncus mulieris 28-1]
          Length = 458

 Score = 84.5 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 97/294 (32%), Gaps = 11/294 (3%)

Query: 50  SFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW 109
                +  ++   AV   V +  L       ++           + V  A      +  W
Sbjct: 138 RLQKWRFPNALSAAVSLIVGISAL----TAAIWVSVSQLASGAPALVRKAGGGFGKLMTW 193

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
           LSD P G+ + ++     +  + L  L E +  +         A       L+   +I  
Sbjct: 194 LSDEPLGLNSEDIDHYAKALSRQLGGLLEKYSSSIAS-----SAWSVTSSVLNLVAAIFI 248

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
            +  LFFF +DG  I      L          +        ++       ++A  + + +
Sbjct: 249 SVFCLFFFLKDGRRIWVWFMRLLPVPLREPVHEAGIRGWITLKGYIKAQAMVAGVDAVFI 308

Query: 230 GSAYWLAGVPSHVA-LGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAI 287
                  G  S    L ++  + + IP    +S  A+++ + L+   +  A  + +    
Sbjct: 309 SIGAAFLGAGSMTIPLALLIFLASFIPIVGAVSTGAIAVLVILLDQGLVKAIIMLIVILA 368

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
              I    L+P L+   + +  L     +  G     ++G  +   ++A +  +
Sbjct: 369 VQQIESNVLQPLLMSNAVNIHPLVVLLAITVGGYFASIIGALLAVPIVAFLNTV 422


>gi|288934120|ref|YP_003438179.1| hypothetical protein Kvar_1239 [Klebsiella variicola At-22]
 gi|290508325|ref|ZP_06547696.1| permease [Klebsiella sp. 1_1_55]
 gi|288888849|gb|ADC57167.1| protein of unknown function UPF0118 [Klebsiella variicola At-22]
 gi|289777719|gb|EFD85716.1| permease [Klebsiella sp. 1_1_55]
          Length = 354

 Score = 84.5 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/347 (15%), Positives = 122/347 (35%), Gaps = 14/347 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +P+ I   +I+      ++F  G  AP+L A+++ +   WP     + +   S T
Sbjct: 10  RRRFSDPEAIALLVILLAGFGIMFFFSGLLAPLLVAIVLAYLLEWPTVR--LERIGLSRT 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +     ++ ++    + LL  F    +  ++ +  +         +  + + +P    A 
Sbjct: 68  WA---TSLVLILFVGILLLLAFVVLPVAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPAL 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                  +  ++++    T       D + +++    +  L   + ++ + + +FF  +D
Sbjct: 125 MDAGIIDAMAENMRNRMLTV-----GDSVVKYSLASLVGLLTLAVYLVLVPLMVFFLLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +          ++ + + + I +   G  +  I   +     + L G+  
Sbjct: 180 KEQMLNAVRRVLPRNRGLAG-QVWKEMNQQITNYIRGKVLEMIVVSVATWIGFILFGLNY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V+     +IP  GA +    V  + L   G       LF    I   +    L P
Sbjct: 239 SLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSLFAVYLIIQGLDGNLLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L    + L  L     +V      G  G+F    L  LI  +    
Sbjct: 299 VLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVHAW 345


>gi|238919126|ref|YP_002932640.1| hypothetical protein NT01EI_1197 [Edwardsiella ictaluri 93-146]
 gi|238868694|gb|ACR68405.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 359

 Score = 84.5 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/348 (15%), Positives = 122/348 (35%), Gaps = 16/348 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +PQ I    I+ +    +YF  G  AP+L A+++ +   WP +   +     S  
Sbjct: 10  RRRFTDPQAIALLTILLVGFCIIYFFNGILAPLLVAIVLAYLLEWPTHK--LQLVGCSRL 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWA 119
           +   +  +  + + ++ +L +      +   L+S +  +  +            P  M A
Sbjct: 68  WAVCVVLLLFIGIVLLTMLVVIPIAWQQGLALMSDMPKMVTRFYEYAATLPRRYPALMDA 127

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
             +     +    + ++ E+ LK +    +           +   + ++ + + +FF  +
Sbjct: 128 GIIDVVVENLRARMALMGESVLKFSLASLV---------GLVTLAIYLVLVPLMVFFLLK 178

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D   +   L  +         +     + + I +   G  +  +  G+     + + G+ 
Sbjct: 179 DKGQMLNALRRVLPRERGLAGQVWLE-MNQQITNYIRGKVVEMVVVGVATYLVFLVLGLN 237

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTLR 297
             + L V+  I  +IP  GA +    V +  L +  +      LF+   +   +    L 
Sbjct: 238 YGLLLSVLVGISVLIPYIGAVLVTIPVVLVALFQWGMGADFWSLFIAYLVVQGLDGNVLV 297

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           P L    + L  L     ++      G  G+F    L  L+  +    
Sbjct: 298 PLLYSEAVNLHPLVIILSVIIFGGLWGFWGVFFAIPLATLVKAVIHAW 345


>gi|251794947|ref|YP_003009678.1| hypothetical protein Pjdr2_0912 [Paenibacillus sp. JDR-2]
 gi|247542573|gb|ACS99591.1| protein of unknown function UPF0118 [Paenibacillus sp. JDR-2]
          Length = 371

 Score = 84.5 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/328 (14%), Positives = 109/328 (33%), Gaps = 6/328 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L   F P+L + +  +   P       K         ++  +  + +  +    ++   
Sbjct: 36  VLAALFVPLLISGMFYYLFRPFVRLLSMKLP--KVVAILLVYIGAIGICYLFFWMIWPPI 93

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             +   LV+      Q    V  WL  +    W  E+  K     ++L       L    
Sbjct: 94  RDQSINLVNNFP---QIVASVQTWLESMQQHEWLKEIGQKDALSTENLTNKLTGSLDELL 150

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              I         + +++   +  +   +++   +G  +   +  +    F        +
Sbjct: 151 NSVIGSV-RGIFNVIMNFFFLLGLVPFMIYYLLSEGDKLPGHILRMLPERFHKEASGALK 209

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   I S  L   + ++  G++    Y L  +P  + LG+I AI   IP   P+     
Sbjct: 210 EIDASIGSFILSKVLTSLLIGVLTFVGYLLIDMPYPLLLGLIAAITNFIPYIGPLIAFIP 269

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +  + +  +      + +   +   I    + P ++G  + +        ++G    +G 
Sbjct: 270 TAVVALTVSPMTVLLVGVVLIVSNQIEANLIGPRIIGKQMNVHPFTVMLLVIGASSIIGA 329

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENK 353
            G+ I   + A+I +I        K N+
Sbjct: 330 FGMIIVVPVYAIIKIIATRVYAFRKHNR 357


>gi|85703786|ref|ZP_01034890.1| membrane protein [Roseovarius sp. 217]
 gi|85672714|gb|EAQ27571.1| membrane protein [Roseovarius sp. 217]
          Length = 347

 Score = 84.5 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/340 (15%), Positives = 126/340 (37%), Gaps = 14/340 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             +  V L+FL     P +    I +   P+           +T + VI  ++++   I+
Sbjct: 8   AVVAFVLLWFLGDVILPFVLGGAIAYFLDPVADRLERLGLSRATSVGVITLLAILAFVII 67

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            LL +       + + V+   +A +    + R+L+     ++      +  S      + 
Sbjct: 68  ALLVIPSL----VNQAVALFNIAPELANDLHRFLTTHFPSLF------EADSALNKTLLS 117

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               ++  G   +    S      ++  + ++ + +   +   D  ++  ++D L     
Sbjct: 118 VGETIRERGGQLLETVLSS-AASMVNILILLVIVPVVSVYLLYDWDNMVAEIDRLLPRDH 176

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               ++++R +   + S   GM  + +  G     A  L G+   + +G I  ++  IP 
Sbjct: 177 APVIRRLARQIDNTLASFIRGMGTVCLILGTYYAVALMLVGLQFGLVVGAIAGLITFIPY 236

Query: 257 GAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
              I    +++ L +    G+  +   +         I    L P LVG  + L  +   
Sbjct: 237 VGSIVGGVLAVGLALFQFWGDWVSVGLVAAVFVSGQIIEGNFLTPKLVGSSVGLHPVWLI 296

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           F L       G +G+ +   + A + VI + +I   ++++
Sbjct: 297 FALSAFGALFGFVGMLVAVPVAAALGVIARFAIDQYRDSR 336


>gi|170016551|ref|YP_001727470.1| permease [Leuconostoc citreum KM20]
 gi|169803408|gb|ACA82026.1| Predicted permease [Leuconostoc citreum KM20]
          Length = 367

 Score = 84.5 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 113/325 (34%), Gaps = 16/325 (4%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIY---SSFISKKEESSTFLAVIATVSVMC-LFIVPLLFL 81
           F+   F P++ A  + +   P+         + ++    LAV+ T      +    L+ L
Sbjct: 40  FISTVFVPLVVAGFLYYVLKPLLTLIKRIQIRGKKIPHQLAVVVTFIFFLSVIAGALVVL 99

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E+  L   +    Q                  +  W ++L+   ++    +  +
Sbjct: 100 VPTLIREITNLADSLPSFAQDMQQFAT--------KTMNSHWFENLNLSINVSE-VKNAV 150

Query: 142 KTNGIDFIPRFASRFGMIFL---DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                 F+   A   G +      + +++I + + LF+   D       +  +       
Sbjct: 151 GKYAASFLTITAGTLGTVVTTVTSFTINLITIPVVLFYMLSDSERFVPAIKKMFPARHAE 210

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              ++   + + I     G  I     GL +   Y++ G P    LGVI  I  ++P   
Sbjct: 211 KISELMAKMDRTIEKYISGQAIEMGFVGLSMTIGYFIIGQPYAWLLGVIAGITNIVPYIG 270

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P      S+ +    +      + +   +   +    + P ++G  + +  L   F L+ 
Sbjct: 271 PWIGVVPSLIVASTQSWKQVIFVLIVMTVVQQLDGNFIYPNVIGKSLAIHPLTIVFLLMV 330

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWK 343
                G++G+ +   + A++ VI K
Sbjct: 331 AGNLWGIVGMILIVPVYAVLRVIVK 355


>gi|302870180|ref|YP_003838817.1| hypothetical protein Micau_5736 [Micromonospora aurantiaca ATCC
           27029]
 gi|302573039|gb|ADL49241.1| protein of unknown function UPF0118 [Micromonospora aurantiaca ATCC
           27029]
          Length = 455

 Score = 84.5 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/295 (15%), Positives = 98/295 (33%), Gaps = 13/295 (4%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
           ++ +     +    +  V  +   +  L  +    +  + EL  K   +++    +  W 
Sbjct: 152 WLLRARLPRSLATAVVLVGGLAAVVGTLTLVVNEFIKGVPELSQK---SSEGVRQIQDWF 208

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
              P  +  S+L          +   +E F            A        +     + +
Sbjct: 209 KTGPLHLSDSQLNRYIDEAQNWINGNTERFTSG---------AISTAATLAEVLTGTVLV 259

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           + A FFF RDG +I + L  L             R     + +      ++A  + + +G
Sbjct: 260 LFATFFFLRDGNNIWRFLVRLLPVAARWKVDDAGRASWATLGAYVRATVLVAFIDAVGIG 319

Query: 231 SAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
               L  +P    L  +  + A IP  GA +S     +  L+      A  +        
Sbjct: 320 IFLVLFDIPFAFPLAALVFLGAFIPIVGAFLSGVVAVLVALVDSGPVTALIILGAVIGVQ 379

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +    L+P ++G  + +  L    G+  GV   G+ G  +   L+A++    + 
Sbjct: 380 QVEGHVLQPLIMGRAVAIHPLAVIIGIAAGVVLAGIAGALVAVPLIAVLNTAVRR 434


>gi|254492420|ref|ZP_05105592.1| conserved domain protein, putative [Methylophaga thiooxidans
           DMS010]
 gi|224462312|gb|EEF78589.1| conserved domain protein, putative [Methylophaga thiooxydans
           DMS010]
          Length = 356

 Score = 84.5 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/343 (14%), Positives = 121/343 (35%), Gaps = 8/343 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M +   ++  +++ +     Y L     P   A ++ +   P+     + K   +  + +
Sbjct: 9   MSDINKLILVIVVIVSGWLFYQLSPVLMPFFIAALLAYLGDPLVDKLETWKLSRTISVTL 68

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           + +V  + + I+ L+ L        K   +           +  WL  +        L T
Sbjct: 69  VFSVLFLVVSIMLLVLLPLLSAQVAKLFTNLPGYLTTLQKLIEPWLISVGLPTDVLNLQT 128

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
              +       + E          +  + +R GM+ L +  +++ + +  F+  RD   +
Sbjct: 129 LKQALSNYWSQVGEVAGG------VFNYMTRSGMVLLQWVGNLVLIPVLTFYLLRDWDVL 182

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             +   L    +   + ++S     ++     G  ++     ++      L G+   + L
Sbjct: 183 VARFRELLPRRYSGTFIQMSLECDDMLAGFIRGQLMVMFALAVIYTVGLTLIGLELALLL 242

Query: 245 GVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           GVI  +++ +P    I    ++        G       + +  A    I    L P  VG
Sbjct: 243 GVIAGVVSFVPYLGLIVGIVLAGLAAFFQFGEWLPVLYVAIVFAAAQAIEGMVLTPRFVG 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             I L  +   F ++ G +  G  G+ +   + A++ V+ + +
Sbjct: 303 ERIGLHPVAVIFAVLAGGQLFGFTGVLLALPVAAVVMVLLRHA 345


>gi|330445198|ref|ZP_08308850.1| conserved hypothetical protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489389|dbj|GAA03347.1| conserved hypothetical protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 358

 Score = 84.5 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 57/348 (16%), Positives = 121/348 (34%), Gaps = 14/348 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +    I+    +++YF      P+L A+++ +   WP+    ++K     TF  ++
Sbjct: 15  DPHAVSLVAILLGGFLTIYFFGSLITPLLVAIVLAYLLEWPVAR--LTKLGLPRTFSVML 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +    L  + L  L      ++  L + V         +  ++S +P          +
Sbjct: 73  VLLLFAGLMSLALFGLVPTIWHQVVNLTADVPKMFN---DLQVYVSSLPERYPDFVQPAQ 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            +    +L+       ++     +    S          + +I + + +FF  +D   + 
Sbjct: 130 VVDLMNNLREKVLGMGESVVKGSLASLVS-----IATLGVYLILVPLLIFFLLKDKDEMM 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           Q L  +          K+   + + I +   G  I  +  G+     + +  +   V LG
Sbjct: 185 QTLLKVLPK-NRRLASKVGSEMNEQISNYIRGKVIEILIVGIASYVTFAVMDLRYAVLLG 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTLRPFLVGG 303
           V+  +  +IP  GA      V++  L +         L L   I   +    L P L   
Sbjct: 244 VLVGLSVLIPYIGAAAVTVPVAMVGLFQWGWTPDFWWLLLAYGIIQALDGNVLVPILFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            + L  +     ++      G  G+F    L  L+  +W   + A  E
Sbjct: 304 AVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWGALLSAEDE 351


>gi|254460825|ref|ZP_05074241.1| membrane protein [Rhodobacterales bacterium HTCC2083]
 gi|206677414|gb|EDZ41901.1| membrane protein [Rhodobacteraceae bacterium HTCC2083]
          Length = 357

 Score = 84.5 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/329 (14%), Positives = 116/329 (35%), Gaps = 14/329 (4%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            I ++++++L     P +    I +   P+     +    S      I T+  + +F++ 
Sbjct: 17  AIFMLAMWYLGDVILPFVLGGAIAYFLDPVADKLEN-LGCSRALATTIITLVAVVIFVLM 75

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +L +    + +   L        Q                   +   +  +  QSL  + 
Sbjct: 76  ILLVVPTLINQAIALFEVAPQLFQDLQAFLA--------ERFPQALDEGSTLRQSLLSIG 127

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
           ET     G       +S      ++  +  + + +  F+   D  +++ ++ +L      
Sbjct: 128 ETIRAKGGELLSSVLSSAS--SIINIVVLFLIVPVVAFYLLLDWDNMTARIYTLLPRDHA 185

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
              ++++  + + + +   GM  + +  G     A  L G+   + +G I  ++  IP  
Sbjct: 186 PTVRELASQIDQTLAAFIRGMGTVCLILGTYYAIALMLVGLQFGLVVGFIAGLITFIPYV 245

Query: 258 APISFTAVSIYLLIKGNIF-NATCLFLWGAIELFIV--DKTLRPFLVGGPIKLPFLPTFF 314
             +   A++I L +        +   + G   +  V     L P LVG  + L  +    
Sbjct: 246 GALVGGALAIGLGLFQFWGDWVSLGLVAGIFVIGQVLEGNVLTPKLVGSSVGLHPVWLLL 305

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L       G +G+ +   + A + VI +
Sbjct: 306 ALSVFGSLFGFVGMLVAVPVAAALGVIIR 334


>gi|319651819|ref|ZP_08005944.1| hypothetical protein HMPREF1013_02556 [Bacillus sp. 2_A_57_CT2]
 gi|317396471|gb|EFV77184.1| hypothetical protein HMPREF1013_02556 [Bacillus sp. 2_A_57_CT2]
          Length = 373

 Score = 84.5 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/341 (17%), Positives = 116/341 (34%), Gaps = 12/341 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             ++ + L +  +L     P +  L I F   P  +    K +       +IA + +  +
Sbjct: 16  IGVVILSLYAFLYLSKVTYPFIIGLAIAFLINPFVNMMEVKWKIPRALAVLIALILIFAI 75

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           F   +  L    +     L   V       I               ++L +   +     
Sbjct: 76  FAGLITLLVAEIVSGADYLAKVVPQHLDTLIDFIEQFFAGQIIPLYNQLASLFNNLGTGQ 135

Query: 134 KILSETFLKTNGIDFIPRFA----------SRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
           +    T ++  G  F                     F +    +IF ++A FF  +D   
Sbjct: 136 QDTIMTNIENVGKQFGSTLGDFIQAFFEKIPNILSWFPNAATVLIFSLLATFFISKDWHR 195

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +S     +         + +   + K +         +     +++ +   +  V   + 
Sbjct: 196 LSGLFSRILPSRAKKSGRTVFADLQKALFGFVKAQATLVSITTVIILAGLLILRVDYAIT 255

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           + ++T ++ +IP  G  + F    IY  I G +  A  L +   I L +  + + P ++ 
Sbjct: 256 IALVTGLVDIIPYLGTGLVFVPWIIYEAIGGEMSRAIGLGILYIIVL-VQRQIMEPKILS 314

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             I L  L T   L  G + +G LGL  GPV + LI  + K
Sbjct: 315 SSIGLDPLATLIALFVGFKLIGFLGLIAGPVTLVLITTLHK 355


>gi|220912007|ref|YP_002487316.1| hypothetical protein Achl_1236 [Arthrobacter chlorophenolicus A6]
 gi|219858885|gb|ACL39227.1| protein of unknown function UPF0118 [Arthrobacter chlorophenolicus
           A6]
          Length = 439

 Score = 84.5 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 56/344 (16%), Positives = 121/344 (35%), Gaps = 17/344 (4%)

Query: 15  MIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +I+ +    ++ L        PV+ A ++     P+ +    ++   +     I  +  +
Sbjct: 51  LILLMAGTLIWLLSHITFLIIPVMVAALLAGLLSPVTAWL-KRRGLPAGLAVAITVLGFI 109

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +    L  +    ++   EL  + +   +    V  WLSD P  + A+++         
Sbjct: 110 AVISGALALVGRQLVIGFGELWQQALEGVR---QVQTWLSDGPLHLTAAQIDQYVKEASD 166

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +L+  S + L           A  FG     +   ++  +  L FF  +G  I   L  L
Sbjct: 167 ALQNNSSSILSG---------ALSFGSTAGHFAAGLLLALFILIFFLLEGDRIWAFLVRL 217

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                 A      R     + S       +A  + + +G    + GVP  + LGV+  + 
Sbjct: 218 LPRRARAAAFGAGRKGWASMVSYARIQMFVAAVDAIGIGVGAAIIGVPLALPLGVLVFLG 277

Query: 252 AMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + IP    +    +++ L L+     NA  +         +    L+P ++G  + L  +
Sbjct: 278 SFIPVVGALVTGVIAVLLALVANGPVNALIMLAIVLAVQQLEGHILQPLVMGKAVSLHPV 337

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                +  G    G+ G      ++A+     +       E+++
Sbjct: 338 AVILSVAAGSYLAGIPGALFSVPILAVANSAIRYIAARTWEHEQ 381


>gi|222056187|ref|YP_002538549.1| protein of unknown function UPF0118 [Geobacter sp. FRC-32]
 gi|221565476|gb|ACM21448.1| protein of unknown function UPF0118 [Geobacter sp. FRC-32]
          Length = 358

 Score = 84.5 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/322 (15%), Positives = 122/322 (37%), Gaps = 4/322 (1%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F PV  ALI+ +   P+ +    +    +  + ++    V+   +  L F+         
Sbjct: 31  FLPVFIALILTYILNPLVAKLAERGMNRTVAIVLVFFALVLLATLAILFFIVSIKGELGS 90

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
             ++    AN+    +P  +          + +    +  + L+ +S +  K      + 
Sbjct: 91  IEINLPEYANRLYNYIPAGVKAYLDIETPEKAYQHLTTALERLRGISFSLFKETFA--VV 148

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
             A    + F+   L      I LF+F  D   +   L +L    +  ++ + +  V +V
Sbjct: 149 TRAFSSTLAFVLSILGYFITPIYLFYFLLDMPELKTTLLNLVPERYRPWFCQKAAEVDEV 208

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI--SFTAVSIY 268
           + S   G  ++ +   ++     +  G+   + +G I+ ++ MIP    +     ++ + 
Sbjct: 209 LSSFVRGQLMLCVILAVLYSIGLYFIGIDLAILIGTISGLLFMIPYLGTLFGIVFSMLMA 268

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
            L   ++ +      W  +        + P +VG  + L  + T   L+ G +  G+ G+
Sbjct: 269 FLKFHDLLHPMLCLGWFMLVQAAEGGIITPKIVGNKVGLHPVVTILALLIGGQWFGIFGM 328

Query: 329 FIGPVLMALIAVIWKESIMAIK 350
            +   + A++ V ++  +   +
Sbjct: 329 LLAVPVTAVLNVFFRSLLDYYR 350


>gi|291297772|ref|YP_003509050.1| hypothetical protein Snas_0238 [Stackebrandtia nassauensis DSM
           44728]
 gi|290566992|gb|ADD39957.1| protein of unknown function UPF0118 [Stackebrandtia nassauensis DSM
           44728]
          Length = 421

 Score = 84.5 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/331 (16%), Positives = 118/331 (35%), Gaps = 14/331 (4%)

Query: 13  RWMIMFIILVSLYFLKGFFA----PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           R +++   +V + +L    +    P+L +L++     P+ +  +       +  A I  +
Sbjct: 77  RALVIAAAVVGVLYLASILSFVVIPILVSLLLAAMLQPLVALLVKAHVPR-SIAAAIVLI 135

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           + +      L  +    +  +  LV  V    +  + +  W    P       L  K ++
Sbjct: 136 AGIAAVAGVLTLVINQFVANIDTLVDSV---QKGLLNLQDWAKYGPL-----HLEQKQIN 187

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +  S      T   ++    +   A     I  +       ++   FFF RDG  I   L
Sbjct: 188 NFFSEFQTVITDWLSDNQSILAGTAVESLGIVFNILTGAFLVLFTTFFFMRDGRRIWTFL 247

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +                 + + S      ++A  + + +G+      +   + L  + 
Sbjct: 248 VRMLPERAHEPLLHAGFASWRTLVSFVRATILVAFIDAVGIGAWLMFLDIELAIPLAALV 307

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIKL 307
            + A IP         V++ + + G+ +    L L G I +  V+   L+P L+G  + +
Sbjct: 308 FLGAFIPIIGATVSGIVAVLVALVGDDWVTALLVLAGVIVVQQVEGHLLQPLLMGRAVSV 367

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             L     +  GV   G +G  I   ++A++
Sbjct: 368 HPLAIVLAVAAGVVLAGPIGALIAVPIVAVL 398


>gi|83949531|ref|ZP_00958264.1| membrane protein [Roseovarius nubinhibens ISM]
 gi|83837430|gb|EAP76726.1| membrane protein [Roseovarius nubinhibens ISM]
          Length = 347

 Score = 84.5 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/342 (15%), Positives = 117/342 (34%), Gaps = 18/342 (5%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           +  + LV L+FL     P +    I +   P+      K   +        T+  + LF+
Sbjct: 7   VTLVFLVVLWFLGDVILPFVLGGAIAYFLDPLADRLE-KLGLTRAMAVATITLFALLLFV 65

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP--QSL 133
           +  L +    + +   L             +   L+    G  +             +  
Sbjct: 66  IMALLVVPTLIKQAVALF-----------DIAPQLARDLEGFISRNFPQVGDGDSTLRQS 114

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
             +    +K+ G   +           ++  L  + + +  F+   D   +   +D L  
Sbjct: 115 LAVVGDTIKSKGGQLLDSAIGSV-SSLINVVLLFVIVPVVAFYLLYDWDRMVAAVDDLLP 173

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  + +++ + + + S   GM  + +  G     A  L G+   + +G +  ++  
Sbjct: 174 RDHAPTVRHLAKQIDRTLASFIRGMGTVCLILGTYYAGALMLVGLQFGLVVGFVAGLITF 233

Query: 254 IPGGAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           IP    +   A++I L +    G+  +   +    A+   I    L P LVG  + L  +
Sbjct: 234 IPYVGALVGGALAIGLALFQFWGDWVSIGLVAGIFALGQVIEGNVLTPKLVGSSVGLHPV 293

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              F L       G +G+ +   + A I V+ + +I   + +
Sbjct: 294 WLIFALSVFGALFGFVGMLVAVPVAAAIGVLARFAIQQYRSS 335


>gi|83942871|ref|ZP_00955331.1| membrane protein [Sulfitobacter sp. EE-36]
 gi|83845879|gb|EAP83756.1| membrane protein [Sulfitobacter sp. EE-36]
          Length = 359

 Score = 84.5 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/340 (15%), Positives = 116/340 (34%), Gaps = 18/340 (5%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            + LV L+F      P L    I +   P+     +    S     ++ T+  + +F++ 
Sbjct: 17  ALFLVFLWFTGDVLLPFLIGAAIAYFLDPVADRLEA-MGLSRAMATMVITLVALLIFVLM 75

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
            L +    + +   L        ++               + +E +   L    +L+   
Sbjct: 76  ALLVIPTLINQAINLFEVAPELTRNFT------------NFLTERFPALLDEGSTLRSSI 123

Query: 138 ETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +   T       +   A       L+  +  + + +   +   D   +  Q+D L    
Sbjct: 124 NSIGSTIQERGGEVLNTAISSAASLLNVMVLFVIVPVVAVYLLLDWDRMVAQIDRLLPRD 183

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                ++++R + + +     GM  + +  G     A  L G+   + +G I  ++  IP
Sbjct: 184 HAPVIRRLARDIDRTLAGFIRGMGTVCLILGAYYAIALMLVGLQFGLVVGFIAGLVTFIP 243

Query: 256 GGAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
               +   A++I L +    G+ F+   +     +   I    L P LVG  + L  +  
Sbjct: 244 YLGAVLGGALAIGLALFQFWGDWFSIGMVAGIFVLGQMIEGNFLTPKLVGNSVGLHPVWL 303

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              L       G +G+     + A + VI + +     E+
Sbjct: 304 ILALSVFGSLFGFVGMLAAVPIAAALGVIARFATEQYVES 343


>gi|325970365|ref|YP_004246556.1| hypothetical protein SpiBuddy_0529 [Spirochaeta sp. Buddy]
 gi|324025603|gb|ADY12362.1| protein of unknown function UPF0118 [Spirochaeta sp. Buddy]
          Length = 362

 Score = 84.5 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 56/332 (16%), Positives = 115/332 (34%), Gaps = 20/332 (6%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-------STFLAVIATVSVMCLFIVPL 78
           F+   F P+L  LII +           +  +         +   +I+    + +    L
Sbjct: 35  FVFSLFKPLLLGLIIAYLVDIPAKKLEVRFRKRIKSPMVARSLATLISLCLFLLIIAGVL 94

Query: 79  LFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           + L       +++  S + VL  +    + +++S  P       +   +++        S
Sbjct: 95  VLLIPQLGFAIRQFSSNLPVLYEESADSLEQFVSRRPELAQGFAMVETYVNTAIEEFKAS 154

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              L       +    S          +++IF +  LF        + +QL  L +   P
Sbjct: 155 SPKLADYTFSLLGGAISGIATS----VVALIFSLYLLF----GKHRLVRQLGYLAKRFMP 206

Query: 198 AYWKKIS----RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
               +      ++  K     F G  + AI  G +      L   P  + +G +  + A+
Sbjct: 207 EQHYQKLFSTMQVANKTFSKFFTGQFLEAIILGSLCTLGMLLFRFPYALTVGSVVGMTAL 266

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP        A+   L+   ++  A    L+  I   +    + P +VG  + LP +  F
Sbjct: 267 IPLVGAYLGGAIGFVLIFGQSLRLALFFLLFLVILQQLEGNLIYPRVVGSSVGLPGVWVF 326

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             ++ G    G+ G+  G  L A +  + K+ 
Sbjct: 327 ASVILGAGLFGIPGVLFGVPLAATLYHLLKQD 358


>gi|293609875|ref|ZP_06692177.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828327|gb|EFF86690.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325123103|gb|ADY82626.1| phosphoribosylaminoimidazole-succinocarboxamide (SAICAR) synthetase
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 397

 Score = 84.5 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/329 (15%), Positives = 119/329 (36%), Gaps = 8/329 (2%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           K    P + A  + +   P+    + K +        +  V +     + L +L      
Sbjct: 26  KPVVIPFIGAFFLAYLFSPLVDVLV-KMKLPRWLAISVVFVGIGVTLTIALWYLVPLIWK 84

Query: 88  EMKELVSKVVLANQ-HGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
           ++      +             W+S         ++        +++    +T    + I
Sbjct: 85  QLVYARDSIPAGIHWINATFLPWVSST---FNVQQMEIDTEQLSKAVMEYVQTNYSADSI 141

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +    ++ G+ F+    +++ + I  F+F  D   + Q L  L    + A   +I   
Sbjct: 142 QAVLLKLAQSGLNFIQIGGTVVLIPIIAFYFLLDWERMLQNLRRLIPRPYEATTLQIVGE 201

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
              V+ +   G  ++ +  G+V      L G+   + +G++  + ++IP          +
Sbjct: 202 CHSVLGAFVKGQFLVMLLLGVVYAVGLQLIGLEVGLIIGMVAGLASIIPYLGFAVGIIAA 261

Query: 267 IY--LLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
           +   L   G +  +   + +   I   +    L+PFL+G  I L  +   F ++ G +  
Sbjct: 262 VIASLFQFGLDWMHLLLVGIVFMIGQAVEGYILQPFLLGDKIGLSPVAVVFAVLAGAQLA 321

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           G LG+ I   + A+I V+ K      + +
Sbjct: 322 GFLGMLIALPVAAVIVVLLKHLRENYERS 350


>gi|325283522|ref|YP_004256063.1| hypothetical protein Deipr_1297 [Deinococcus proteolyticus MRP]
 gi|324315331|gb|ADY26446.1| protein of unknown function UPF0118 [Deinococcus proteolyticus MRP]
          Length = 371

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/349 (14%), Positives = 119/349 (34%), Gaps = 7/349 (2%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLS----ALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           R ++  ++  + Y   G  + +L     A +I + + P+ +     +      +  +  +
Sbjct: 21  RLVVFGLLAFAAYRFTGLISSILVNFAIAYLIAYIANPMLNWLERGRVPRGLGVLFVLLL 80

Query: 69  SVMCLFIVPLLF--LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
               L +  LL   +    +  +++L   V           +WLS               
Sbjct: 81  FGGLLTVAGLLLGTIASQLIDLLRQLPQLVQNLEGWADSWIQWLSARGVTGLEDARAGMT 140

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLS-IIFMIIALFFFYRDGFSIS 185
            +    ++ L +  +        P+ A    +  +   L  ++ +++   +   D   ++
Sbjct: 141 ETVQTYIRNLGDNLVPMLQRWLDPQGALLTSIATIGSVLGRLLIVMLMSVYLMLDYSRVN 200

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + +  +    +     + + +    I     G  +IA+  G V+     L G+PS +A+G
Sbjct: 201 RAILKMFPRPWQPRVLEFADLAGTAIGGYVRGQLLIALFVGTVVALGLSLLGIPSALAIG 260

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            +     +IP   PI     +I L     I           +   +    L P ++    
Sbjct: 261 FLAGAFNIIPYLGPIIGAIPAILLAAPMGITKVLLAVGVFLVANQVEGSFLSPIVLSKTT 320

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            L  +     ++ G   +G  G  I   L+AL  +  ++   + +   E
Sbjct: 321 DLHPITVLLSILIGASVLGFAGALIAVPLVALGKLAVEKYYYSSRIYTE 369


>gi|315503542|ref|YP_004082429.1| hypothetical protein ML5_2759 [Micromonospora sp. L5]
 gi|315410161|gb|ADU08278.1| protein of unknown function UPF0118 [Micromonospora sp. L5]
          Length = 452

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/295 (15%), Positives = 98/295 (33%), Gaps = 13/295 (4%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
           ++ +     +    +  V  +   +  L  +    +  + EL  K   +++    +  W 
Sbjct: 149 WLLRARLPRSLATAVVLVGGLAAVVGTLTLVVNEFIKGVPELSQK---SSEGVRQIQDWF 205

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
              P  +  S+L          +   +E F            A        +     + +
Sbjct: 206 KTGPLHLSDSQLNRYIDEAQNWINGNTERFTSG---------AISTAATLAEVLTGTVLV 256

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           + A FFF RDG +I + L  L             R     + +      ++A  + + +G
Sbjct: 257 LFATFFFLRDGNNIWRFLVRLLPVAARWKVDDAGRASWATLGAYVRATVLVAFIDAVGIG 316

Query: 231 SAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
               L  +P    L  +  + A IP  GA +S     +  L+      A  +        
Sbjct: 317 IFLVLFDIPFAFPLAALVFLGAFIPIVGAFLSGVVAVLVALVDSGPVTALIILGAVIGVQ 376

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +    L+P ++G  + +  L    G+  GV   G+ G  +   L+A++    + 
Sbjct: 377 QVEGHVLQPLIMGRAVAIHPLAVIIGIAAGVVLAGIAGALVAVPLIAVLNTAVRR 431


>gi|23099465|ref|NP_692931.1| hypothetical protein OB2010 [Oceanobacillus iheyensis HTE831]
 gi|22777694|dbj|BAC13966.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 355

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 57/342 (16%), Positives = 130/342 (38%), Gaps = 17/342 (4%)

Query: 11  IMRWMIMFIILVSLY-----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           ++    +F+I V  Y     F+     P + A +I +   P+                  
Sbjct: 20  VIITFYLFVITVPYYSGFFTFVGKLLIPFIIATLITYLLHPVIEKLHRLHIHRG------ 73

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +S++ ++++    +     L    +V ++   +++   +P + S     +     +T 
Sbjct: 74  --ISILLIYLIFFGGVGLSIYLGYPVIVQQITEISKN---IPEFFSLYEQLILRVYEYTS 128

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L      ++        + ID +           +D  + I  + + +F+F +D   I 
Sbjct: 129 FLPEGVHDRMDDMIASIESRIDQLLSNLVGGFDGLMDKIIIITVIPVLVFYFLKDFKQIL 188

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L       +    K++ + + K +     G  I+++  G+     + +  +P  + L 
Sbjct: 189 SFLGKFIPSQYRDDAKRLLKELDKGLGGYIRGQLIVSLFVGIASFLLFLIMKIPYGLLLA 248

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           +I AI+ +IP  G  I    V       G+      + L   I   I    L P+++G  
Sbjct: 249 IILAIVNIIPYFGPIIGAVPVITIAYTAGDSGKVLLVILALFILQIIESNLLSPYIMGKT 308

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           I++  +   F L+ G +  G+LG+ +   ++ +  VI ++ I
Sbjct: 309 IRIHPVAIIFALLFGSQLGGILGMILAVPILMIAKVIVQQFI 350


>gi|284035595|ref|YP_003385525.1| hypothetical protein Slin_0663 [Spirosoma linguale DSM 74]
 gi|283814888|gb|ADB36726.1| protein of unknown function UPF0118 [Spirosoma linguale DSM 74]
          Length = 373

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/339 (13%), Positives = 117/339 (34%), Gaps = 18/339 (5%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q     + + I+ V++Y  +    P+  + ++     P+    I +          +A 
Sbjct: 11  HQFSHSLLSLAILTVAIYLGQDILVPLAMSGLVAVLLRPVEDRLI-RLGIHKVIAISLAL 69

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + +     + L         +L               RW+       +      +  
Sbjct: 70  LLAIVIVAGVTIILSMQLSDFADDLPKIRQNLADFFSDAKRWVRR----EYNVSYRQQEQ 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              ++     ++    + + FI                ++  + I +F        +   
Sbjct: 126 YLKKAQAQTLDSLQSPDTLGFITGPLG-----------TLTLVPIYVFLLLYYRTMLLHF 174

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  L         +++   V  VI+S  +G+ I       +      + GV   + LG++
Sbjct: 175 VVVLFAEKHTNNVREVLGEVKSVIQSYMVGLLIETACVAALNSVGLLILGVQYSILLGIM 234

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL--FLWGAIELFIVDKTLRPFLVGGPI 305
            AI+ ++P    +  T +++ +    N   +  L   +   +  FI +  L P +V   +
Sbjct: 235 AAILNLVPYIGGLVATVLTVIITFSNNPETSIILGVVIVFLVVQFIDNNVLVPLIVASKV 294

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           ++  L +  G++ G    G+ G+F+    +A++ VI+  
Sbjct: 295 RINALVSIVGVLIGGALAGVSGMFLSIPAIAILKVIFDR 333


>gi|260426954|ref|ZP_05780933.1| membrane protein [Citreicella sp. SE45]
 gi|260421446|gb|EEX14697.1| membrane protein [Citreicella sp. SE45]
          Length = 355

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/340 (15%), Positives = 108/340 (31%), Gaps = 14/340 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
                V L+FL     P +    I +   P+          S        T+  + LF++
Sbjct: 14  AIAFAVVLWFLGDVLLPFVLGGAIAYFLDPVADRLERA-GMSRAMATGTITIGAVVLFVI 72

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             L +      +  +L+             P     +   +            P    ++
Sbjct: 73  LALAVAPALARQTSQLIDTA----------PELFRQLQSFLTTHFPSIMVEGSPVRETLV 122

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           S           +        M  L+  L  + + +   +   D  ++  ++D L     
Sbjct: 123 SIGETIKERGAQLFDTVLTSAMSLLNILLLFVIVPVVAVYMLLDWDNMVARVDELLPRDH 182

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               + ++R +   +     GM  + +  G       WL G+   + +GV+  ++  IP 
Sbjct: 183 APVIRGLAREIDATLAGFIRGMGSVCLILGTYYAVTLWLVGLNFGLVVGVVAGMLTFIPY 242

Query: 257 GAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
              I   A++I L +    G+      +        F+    L P LVG  + L  +   
Sbjct: 243 VGAIVGGALAIGLALFQFWGDWVWIAVVAGIFFFGQFLEGNFLTPKLVGESVGLHPVWLI 302

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             L       G +G+ +   L A + VI +  +    ++K
Sbjct: 303 LALSVFGSLFGFIGMLVAVPLAASLGVIMRFLVGQYTDSK 342


>gi|153940198|ref|YP_001391112.1| hypothetical protein CLI_1854 [Clostridium botulinum F str.
           Langeland]
 gi|170754473|ref|YP_001781400.1| hypothetical protein CLD_2788 [Clostridium botulinum B1 str. Okra]
 gi|152936094|gb|ABS41592.1| putative membrane protein [Clostridium botulinum F str. Langeland]
 gi|169119685|gb|ACA43521.1| putative membrane protein [Clostridium botulinum B1 str. Okra]
 gi|295319158|gb|ADF99535.1| putative membrane protein [Clostridium botulinum F str. 230613]
          Length = 364

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/320 (15%), Positives = 111/320 (34%), Gaps = 9/320 (2%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P + A  I +   P+   F +K + +     ++  + V+ L  + +       +  + 
Sbjct: 43  LVPFIWAFGIAYMLNPLMKYFQNKFKLNRILSIILTYIIVIGLLTLFINTFVPKIIKNVG 102

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           +L +         I   +W ++      A ++  ++     ++  L      +N  +   
Sbjct: 103 DLFAHSPDYINKTI---QWFNENIKYSKAYDMLMENSQISNNIPNLINKI--SNLTNTFI 157

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK----KISRI 206
                  + F    +  +F +I   +   D  S+ +        L             + 
Sbjct: 158 NTFLNTTIKFTSSLVKFVFGLIISIYLLLDKESLIENFKKFILALTGEKIYSKTLSFFKE 217

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           V  V     +G  I ++  GL+  +   +  VP    +  I  I  MIP   P      +
Sbjct: 218 VDLVFSKFIIGKAIDSLIIGLMCFAGLNIMKVPYAALIAFIVGITNMIPYFGPFIGMIPA 277

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
             + +  N   A  + ++  I        L P ++G  + L  +   F +  G  T G++
Sbjct: 278 FVITLFFNYIKAIWVLIFIIILQQFDGWYLGPKILGNQVGLSPIWIIFAITIGGGTFGVM 337

Query: 327 GLFIGPVLMALIAVIWKESI 346
           G+F+   + A+I +   + I
Sbjct: 338 GMFLSVPIAAIIKIYLDKYI 357


>gi|291296851|ref|YP_003508249.1| hypothetical protein Mrub_2478 [Meiothermus ruber DSM 1279]
 gi|290471810|gb|ADD29229.1| protein of unknown function UPF0118 [Meiothermus ruber DSM 1279]
          Length = 369

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 54/333 (16%), Positives = 117/333 (35%), Gaps = 14/333 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
              +  A I  + + PI  +   ++         +  + V     + L    +     + 
Sbjct: 41  LITLALAFIFAYLTSPIVRALEKRQVPR-----FVGVLLVYLGLGLFLGLASFLIAEMVN 95

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASEL-------WTKHLSHPQSLKILSETFLKT 143
            L   V    +   P+  W+ ++P  +   EL       + +     Q+L       L  
Sbjct: 96  VLARYVTELPRILTPLLTWIENLPSRIGQVELPPALEGAFAQAAQGLQTLLEGFTQTLLQ 155

Query: 144 NGIDFIPRFASRFG--MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                + +  S  G     +   L +   +I   +   D   IS+ L       +  +  
Sbjct: 156 GLRALLAQGGSLVGFFASLVGGVLQLFAALIISIYLLYDLPQISKTLFQAVPLPYQPFVA 215

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            I+  + + +     G  ++AI  GL++   +W+ GVP   +LG + A+  ++P    I 
Sbjct: 216 DIAAKLDRAVGGYIRGQLLVAISVGLIVTVGFWICGVPLAGSLGFLAAVFNLVPFVGVIV 275

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
            T  ++ L +         +     +   +    L P ++G    L  +     ++ G  
Sbjct: 276 STVPAMLLALTVGWPQVLAVLGVVVVANQVEAHVLSPRILGQATSLHPVSVIAAILVGSS 335

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             GL+G  +   L+A   V++ E  +  +  +E
Sbjct: 336 LYGLVGALLAVPLLAFFKVLYTELYLNSRFYRE 368


>gi|160940250|ref|ZP_02087595.1| hypothetical protein CLOBOL_05139 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436830|gb|EDP14597.1| hypothetical protein CLOBOL_05139 [Clostridium bolteae ATCC
           BAA-613]
          Length = 383

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 56/349 (16%), Positives = 123/349 (35%), Gaps = 13/349 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLK----GFFAPVLSALIIGFTSWPIYSSFISKKEES 58
           +T      I+  M   I+L++ + L        AP ++A +I +           +   +
Sbjct: 13  KTEARKIFIINCMYFTILLLAAFVLLKYGLPMVAPFVTAFVIAYLLRRPICFASVRLHMN 72

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
               A++  +    +  +    L        K LV+ +     +        + I GG+ 
Sbjct: 73  RKITAILMVLLFYSVAGLLFTLLCVKMFSNGKSLVASLPSVYAN--YAEPVFTGIFGGIE 130

Query: 119 ASEL-----WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
              L         L   +   + S   + +     +  + S F        ++++ M+I 
Sbjct: 131 QYLLRMDPSLLGALEELEGHFVQSAGQMVSGISMSVMGWLSGFASSLPGMFINLLLMVIT 190

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
            FF   D   ++              + +I   V   +        +I     + L    
Sbjct: 191 TFFIAADYELLTGFCLRQLGERPKEVFMEIQSYVVGTLFVCIRSYALIMTITFVELSIGL 250

Query: 234 WLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            L GV + + +  + A+  ++P  G        ++   + G+   A  L +   + + +V
Sbjct: 251 TLIGVENSLVIAFLIAVFDILPVLGTGGIMIPWTVITALMGSHGLALGLLVVY-LVITVV 309

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
              + P +VG  I L  + T   +  G + +G+LGLF  P+ ++L+  +
Sbjct: 310 RNIIEPKIVGSQIGLHPVVTLVSMFVGAQLLGVLGLFGFPIGLSLLRYL 358


>gi|297583924|ref|YP_003699704.1| sporulation integral membrane protein YtvI [Bacillus
           selenitireducens MLS10]
 gi|297142381|gb|ADH99138.1| sporulation integral membrane protein YtvI [Bacillus
           selenitireducens MLS10]
          Length = 355

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 57/345 (16%), Positives = 129/345 (37%), Gaps = 6/345 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + I   +++ +I +  YF+     P+L+AL+      P  +      + S      I  
Sbjct: 10  KKYISIALVIVVIGLLFYFVLPVATPILTALVTALFLTPAVNGLTKYTKLSRQLSVFIVF 69

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +S +         LF   + ++ +  + +            W++ +       + +++ +
Sbjct: 70  ISFLAALSAFSYILFTRALTQLNQFFNNLPSIINDIN--IAWINILDNLRIQFDQYSQDI 127

Query: 128 SHPQSLKILSETFLKTNGID--FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            +   + + +  F   + +    I   A+        Y +S +  +IAL+ F  D   + 
Sbjct: 128 VNEIDIAVTNALFGLRDQLQDINIIETATNLLTAIPSYIVSFLVFLIALYLFLIDLPRLK 187

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            ++ +          + +S  +  VI   F    +++I   +V      +      + + 
Sbjct: 188 TKIFTYLSEDTAEKVRFMSARLSYVIFGFFKAQFLVSIIIFIVTLIGLLIVAPEVALIMS 247

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           +    +  IP  G+       + Y LI G+ F A  L +   I L  + +T+ P ++G  
Sbjct: 248 IFIWAIDFIPIIGSIAVLAPWAGYQLIAGDTFMAIQLLVLAGILL-TIRRTVEPKVMGHH 306

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           I L  L T   L  G+  +G +G  +GP+ +       +  I+  
Sbjct: 307 IGLSPLATLISLYIGLMLLGAIGFILGPLAVIFFQSAREAEIIKF 351


>gi|319405632|emb|CBI79255.1| permease protein [Bartonella sp. AR 15-3]
          Length = 385

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/319 (14%), Positives = 109/319 (34%), Gaps = 13/319 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P ++ +++ +   PI   F  +      F  V+ T+S++ +F+  L+ L      +++
Sbjct: 52  LFPFIAGIVLAYFLNPIVQIFE-RIGIHRVFGTVLITLSIIIIFVAALIILIPIISGQIQ 110

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG--IDF 148
           + VS  +    +       +           +     S P  L    +  L  +   I  
Sbjct: 111 QFVSNGLPIYVNR------IQTFFVEHNFDWVRRYFDSDPNELHTNIKALLGQSSDFITS 164

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +     + G   ++     +   +  F+   D   +   +DS          + +   + 
Sbjct: 165 LLNSLLKSGKSIVNIVSLFVVTPVVTFYILLDWPQMVNAVDSWIPRSHLITIRSLFHEMD 224

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           K +     G   + +           + G+   + +G+   +++ IP    +    +SI 
Sbjct: 225 KAVAGFVRGQGTVCLILAGYYAIGLTITGLNFALLIGIFVGLISFIPYIGTMIGFILSIG 284

Query: 269 LLI----KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           +        +      + +   I  FI    L+P LVG  + L  +   F L      +G
Sbjct: 285 VAWVQFYPDDWSWVFVVMIVFFIGQFIEGYILQPKLVGSSVGLHPVWLMFALFAFGSLLG 344

Query: 325 LLGLFIGPVLMALIAVIWK 343
             G+ +     A+I V+ +
Sbjct: 345 FTGMLVAVPAAAIIGVLVR 363


>gi|15892901|ref|NP_360615.1| putative permease PerM-like protein [Rickettsia conorii str. Malish
           7]
 gi|15620091|gb|AAL03516.1| putative permease perM homolog [Rickettsia conorii str. Malish 7]
          Length = 356

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 57/355 (16%), Positives = 123/355 (34%), Gaps = 7/355 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           MR+ ++N   I   + + + +     +     P   A II +   P      SK + S+ 
Sbjct: 1   MRKIIMNRTVIFWLVFLGLFISGFMLISDAVKPFFIAFIISYLLQPAIGFIASKFKISNK 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           F + I  +  + +F + L  L      ++   ++ +   N +          +P  M   
Sbjct: 61  FASSIIYLIFLSIFFLSLTILVPIIYGQIFTFINNIPKYNNYLQTEI-----LPPIMVKI 115

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                 ++      + +        +  I     R+ +I ++  +  + + I LF+F RD
Sbjct: 116 YSIEPDIADKIKNSLSNFINSIFTILGSIANNFWRYTIITINIFVLFLLIPIILFYFLRD 175

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   + SL          +I   +  ++ +   G   I +        A+ + G+  
Sbjct: 176 WAKIIANMKSLLPIKTRPKILEILSAINNLLSAYIRGQLNICLLLSTYYSIAFTVIGIDL 235

Query: 241 HVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + LG++T  + +IP           + I  L  G       + +   +          P
Sbjct: 236 ALLLGILTGFLVIIPFLGTFISFLLTLIIGYLTFGVTTKLLYIMIIYLVGNICESYIFTP 295

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            ++G  I L  L   F +       G++G+F    +  +  ++    I   K +K
Sbjct: 296 KIIGDKIGLHPLWIIFSIFACGSLFGIIGIFFAIPIAGITKILLLNLIKFYKSSK 350


>gi|298373571|ref|ZP_06983560.1| membrane protein [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274623|gb|EFI16175.1| membrane protein [Bacteroidetes oral taxon 274 str. F0058]
          Length = 362

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/336 (13%), Positives = 115/336 (34%), Gaps = 9/336 (2%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
             S+ +L G   P +   +I +   P+      +    S  +++I  + ++C  +  L  
Sbjct: 25  FFSIRYLYGVLLPFVIGWLIAYFIHPLVCFIQYRIRVKSRIVSIILALLLVCGVLFGLGM 84

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L    + E    +  +V      I    +++++           + L + + + + +   
Sbjct: 85  LIIPIIYEEMSKIIPLVDKYLQDINAYPFINEVLIKNLQIHF--EALDYKKLISLDTLNV 142

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           +    +       S    + L        ++  +F   +D   +S  +  L    +  + 
Sbjct: 143 IIGKVVPQFWGLMSNLWQVVLAIGTMFFTVLYVIF-ILKDYEKLSDNMIKLFPKHYRNFA 201

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           +++   +   +   F G  +I +   ++    + + G+P  + +G++  I++ +P    +
Sbjct: 202 QELQTDLSGAMNRYFRGQALICLIIAILYSIGFTIIGLPMAIVMGILMGILSFVPYLHSL 261

Query: 261 SFTAVSIYLLIKGN------IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
            F  V  +  I               + +   I     D  L P ++G  + L       
Sbjct: 262 GFIPVIFFAFINSAETGNSLGLMLLGILIVFVIIQLSTDAFLVPRIMGKNMGLSPAIILL 321

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            L       G LGL I      +    +K  ++  +
Sbjct: 322 SLSTFGVMFGFLGLIIALPFTTIAIAYYKRLVIEKE 357


>gi|225181230|ref|ZP_03734675.1| protein of unknown function UPF0118 [Dethiobacter alkaliphilus AHT
           1]
 gi|225168010|gb|EEG76816.1| protein of unknown function UPF0118 [Dethiobacter alkaliphilus AHT
           1]
          Length = 367

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/336 (15%), Positives = 118/336 (35%), Gaps = 5/336 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           FI +  + F++  F P L ALI+ +   PI S    +         ++   ++  L ++ 
Sbjct: 27  FIFIPLVVFVRLLFLPTLFALILYYLFRPIVSWLQGRNVARP-LAVLMIYATLALLVVLI 85

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
              +      ++ EL+          I     L +     +  + +  +          S
Sbjct: 86  FGTVGVEAYEQLLELIDFFPAYLDQAINAVGALEE----TYLFQRFQANDMFSIEDLAES 141

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            +    N +  +    S       +  +  + + I LF+  +DG S  + +       + 
Sbjct: 142 VSEFILNALPGVQEGISSAMGFLANAVILFVLLPIILFYLLKDGESFHRFITRHIPEGYR 201

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                I R +   + S   G  I+++  G++    + + G+   + L +   +   IP  
Sbjct: 202 EEALTILREIDHGLASFIQGQIIVSMSVGVLAYIGFLIIGIRHALILALFAVVTNFIPYI 261

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P   T  ++ + +  +   A  + +   I   I    + P ++G  + L  +     L+
Sbjct: 262 GPWIATIPAVIVGLFTSGLMALQVLIVIFIVQQIESLFITPQVMGKKLYLHPMVIIVLLL 321

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                 GLLGL I      +  +I+      ++  K
Sbjct: 322 VVGNLAGLLGLIIAVPTFVIFKIIFSHLYEFLRTKK 357


>gi|195978174|ref|YP_002123418.1| permease [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|195974879|gb|ACG62405.1| permease [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 375

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/295 (14%), Positives = 107/295 (36%), Gaps = 5/295 (1%)

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + ++  +   +  + +   + + +L++ +    Q      + +    G          ++
Sbjct: 80  LCMLLAYFTFISLIVWIISIVIPDLIASISSLTQFDTRAIKEVISDLGHNKLIARAINYI 139

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL--DYCLSIIFMIIALFFFYRDGFSIS 185
                L      + +     FI         +       ++++   +   +       + 
Sbjct: 140 GGDAKLTETITNYSQQLLKQFIGVLTGILTSVTAVASAIINVVISFVFSLYVLASKEELC 199

Query: 186 QQLDSLGEHLFPAYWKKISRIV---PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           QQ  +L +     Y K +  +V       R  F+  T+ A+  G +     ++  +P   
Sbjct: 200 QQATTLIDTYTGKYAKTVHYLVGLLHSRFRGFFVSQTLEAMILGSLTAIGMFILQLPFAG 259

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            +GV+ A  A+IP        A+   L++  ++  A    ++  I   I    + P +VG
Sbjct: 260 TIGVLVAFTALIPVVGASIGAAIGFVLIMTQSMSQAVVFIVFLVILQQIEGNFIYPRVVG 319

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           G I LP +     +  G    G++G+ +   L A +  + K+ I   +  +++ S
Sbjct: 320 GSIGLPAMWVLMAITIGAALKGIVGMIVAVPLAATLYQVVKDHIHKKQALQDRQS 374


>gi|148979870|ref|ZP_01815748.1| permease PerM [Vibrionales bacterium SWAT-3]
 gi|145961562|gb|EDK26863.1| permease PerM [Vibrionales bacterium SWAT-3]
          Length = 358

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 52/340 (15%), Positives = 115/340 (33%), Gaps = 14/340 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +    I+    +++YF     AP+L A+++ +   WP+    + +     T   ++
Sbjct: 15  DPHAVSLVAIILFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQ--LQRLGIPRTPSVML 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +    L ++ +  L      ++  L++ +         + ++++ IP           
Sbjct: 73  VILMFFSLMLLAIFGLVPTIWEQVGNLINDIPSMYGS---LQKFIATIPERYPELANLQI 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S   + K  +    ++     +    S          + +I + + +FF  +D   + 
Sbjct: 130 VESVMSNAKNKALGMGESVVKGSLASLVS-----LATLGVYLILVPLLIFFLLKDKEEMI 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +          K+   + + I +   G  +  +  G V    + +  +   V L 
Sbjct: 185 RMASGVLPR-NRRLATKVWEEMNEQISNYIRGKVLEILIVGGVSYVTFAILDLRYSVLLA 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V      +IP  GA      V+I  L   G       L L   I   +    L P L   
Sbjct: 244 VAVGFSVLIPYIGAAAVTVPVAIVGLFQWGLEPQFYWLLLAYGIIQALDGNVLVPVLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            + L  +     ++      G  G+F    L  L+  +W 
Sbjct: 304 AVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWN 343


>gi|288802984|ref|ZP_06408420.1| membrane protein [Prevotella melaninogenica D18]
 gi|288334501|gb|EFC72940.1| membrane protein [Prevotella melaninogenica D18]
          Length = 374

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 52/364 (14%), Positives = 125/364 (34%), Gaps = 16/364 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKE- 56
           MR+T+   + I   +I   ++   +    L G   P   A ++ +  +PI      K   
Sbjct: 1   MRQTITFDKFIRWALIALAVITVGFIINALSGVLLPFFIAWLLAYLLYPIVKFVQYKLHV 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
                  +I  + V  LF    LF+    + ++ + ++ V              + I   
Sbjct: 61  PGRALSIIITFLLVAALFTAIFLFIVPPMINQVDKFMTIVNRYLHETTHTNDIATMIQKW 120

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
           +  ++   +            +T +       I     +   I +    S I ++   FF
Sbjct: 121 IRENQTEIERFLKSPDFTNTIKTAMPK-----IFSVIGQTASIVISIIASCITLLYT-FF 174

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
              D   ++     +       +W  +++   + + +   G  ++++  G++    + + 
Sbjct: 175 ILLDYEVLTNNWIRIFPKNVRPFWAGLAQDAERELNNYIRGQGLVSLCMGILFCIGFTII 234

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI----KGNIFNATC--LFLWGAIELF 290
             P  + +G++  I+ ++P     +    +   L+     G  F        +  A+   
Sbjct: 235 DFPMAIGMGILIGILNLVPYLHTFALIPTAFLALLKAADTGQNFWIIFASALIVFAVVQL 294

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++D  + P ++G  + L        L      +G +GL I   L  LI   W+  +    
Sbjct: 295 LMDMVITPKIMGKAMGLNPAILLLSLSVWGALLGFIGLIIALPLTTLIIAYWQRYVTKEG 354

Query: 351 ENKE 354
           +  +
Sbjct: 355 DGAQ 358


>gi|206581058|ref|YP_002237181.1| putative permease PerM [Klebsiella pneumoniae 342]
 gi|206570116|gb|ACI11892.1| putative permease PerM [Klebsiella pneumoniae 342]
          Length = 354

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 54/347 (15%), Positives = 122/347 (35%), Gaps = 14/347 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +P+ I   +I+      ++F  G  AP+L A+++ +   WP     + +   S T
Sbjct: 10  RRRFSDPEAIALLVILLAGFGIMFFFSGLLAPLLVAIVLAYLLEWPTVR--LERIGLSRT 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +     ++ ++    + LL  F    +  ++ +  +         +  + + +P    A 
Sbjct: 68  WA---TSLVLILFVGILLLLAFVVMPVAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPAL 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                  +  ++++    T       D + +++    +  L   + ++ + + +FF  +D
Sbjct: 125 MDAGIIDAMAENMRNRMLTV-----GDSVVKYSLASLVGLLTLAVYLVLVPLMVFFLLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +          ++ + + + I +   G  +  I   +     + L G+  
Sbjct: 180 KEQMLNAVRRVLPRNRGLAG-QVWKEMNQQITNYIRGKVLEMIVVSVATWIGFILFGLNY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V+     +IP  GA +    V  + L   G       LF    I   +    L P
Sbjct: 239 SLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSLFAVYLIIQGLDGNLLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L    + L  L     +V      G  G+F    L  LI  +    
Sbjct: 299 VLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVHAW 345


>gi|108798197|ref|YP_638394.1| hypothetical protein Mmcs_1226 [Mycobacterium sp. MCS]
 gi|119867293|ref|YP_937245.1| hypothetical protein Mkms_1243 [Mycobacterium sp. KMS]
 gi|108768616|gb|ABG07338.1| protein of unknown function UPF0118 [Mycobacterium sp. MCS]
 gi|119693382|gb|ABL90455.1| protein of unknown function UPF0118 [Mycobacterium sp. KMS]
          Length = 376

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 81/249 (32%), Gaps = 6/249 (2%)

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                    +V +     Q        + D  GG        +  S   ++         
Sbjct: 93  GLVAAVAPAIVEQSTELAQQATAGVVQVRDWLGGPPLDISEAQLDSAVTAITDRL----- 147

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            +    I               ++    I+  FF  +DG      L     +    +  +
Sbjct: 148 NSSSAQIASGVFTGVGAATSALVTAFTAIVVTFFLLKDGPRFIPWLRRTVGNPAAPHVAE 207

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
           +   V   +        ++++ + +++G+   + GVP   AL +IT I   +P  GA ++
Sbjct: 208 VLERVWSTLGGFIRTQALVSLVDAVLIGAGLVILGVPLAYALAIITFIGGFVPIVGAFVA 267

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
                +  L+     +A  +         +    L+P+L    +KL  +     +  G  
Sbjct: 268 GGLAVLIALVSNGPVDALIVLGIILAVQQLEGNVLQPWLQSKSMKLHAVIVLLAVTLGAS 327

Query: 322 TMGLLGLFI 330
           T G++G F+
Sbjct: 328 TFGVIGAFL 336


>gi|29375296|ref|NP_814450.1| hypothetical protein EF0699 [Enterococcus faecalis V583]
 gi|255971159|ref|ZP_05421745.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|255973783|ref|ZP_05424369.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256617587|ref|ZP_05474433.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256761470|ref|ZP_05502050.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256854440|ref|ZP_05559804.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256957429|ref|ZP_05561600.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256964462|ref|ZP_05568633.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|257077575|ref|ZP_05571936.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|257080949|ref|ZP_05575310.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|257083628|ref|ZP_05577989.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|257086060|ref|ZP_05580421.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257089128|ref|ZP_05583489.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257415270|ref|ZP_05592264.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|257418314|ref|ZP_05595308.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257420962|ref|ZP_05597952.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|294780483|ref|ZP_06745848.1| putative membrane protein [Enterococcus faecalis PC1.1]
 gi|300861769|ref|ZP_07107849.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
 gi|29342756|gb|AAO80520.1| conserved hypothetical protein [Enterococcus faecalis V583]
 gi|255962177|gb|EET94653.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|255966655|gb|EET97277.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256597114|gb|EEU16290.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256682721|gb|EEU22416.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256710000|gb|EEU25044.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256947925|gb|EEU64557.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256954958|gb|EEU71590.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256985605|gb|EEU72907.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256988979|gb|EEU76281.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|256991658|gb|EEU78960.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|256994090|gb|EEU81392.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|256997940|gb|EEU84460.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257157098|gb|EEU87058.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
 gi|257160142|gb|EEU90102.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257162786|gb|EEU92746.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|294452482|gb|EFG20919.1| putative membrane protein [Enterococcus faecalis PC1.1]
 gi|300848294|gb|EFK76051.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
          Length = 381

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 54/334 (16%), Positives = 113/334 (33%), Gaps = 7/334 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F    FAPVL A  + +   P+ +  + K +    +  ++  + ++   ++ LL +    
Sbjct: 40  FFSTLFAPVLVAGFLYYLLNPVVN-LLMKTKMKRIYAVLLVFLLLIIALVLILLTIIPKL 98

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++  L S +    +        ++++P            L+       +S   +    
Sbjct: 99  ADQLASLASSMPDFFKQVETWIYEIAELPIFKQID------LTSYIEKMDISYANIIQQF 152

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +               + ++     LF+  +DG  +   +              +  
Sbjct: 153 LSSLSSSLGSIVSTVASTTIVLVTAPFILFYMLKDGDKLVPAIQRFLPEKRKDDIVDLLG 212

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + + + S   G  I  +  G      Y L GV      GVI     +IP   P    A 
Sbjct: 213 QLNQTLSSYISGQAIECLFVGTFTIIGYSLLGVRYAFLFGVIAGFTNLIPYLGPYLGLAP 272

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + I      A    L   +   +    + P ++G  +K+  L     L+      GL
Sbjct: 273 AVLVTIFNEPVKAALCCLVVLVVQQLDGNIIYPNVIGKSLKIHPLTIILILLVAGNLAGL 332

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           LG+F+G    A+   I    I  +K  + +  +N
Sbjct: 333 LGIFLGVPFYAICRTIIYYVIDMVKAGRSEKVTN 366


>gi|311069224|ref|YP_003974147.1| putative permease [Bacillus atrophaeus 1942]
 gi|310869741|gb|ADP33216.1| putative permease [Bacillus atrophaeus 1942]
          Length = 353

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 52/330 (15%), Positives = 113/330 (34%), Gaps = 11/330 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
               +K    P++ A+ I +   PI           S     ++ + +  LF   + +  
Sbjct: 35  FCLVVKSILIPLIIAIFISYLLLPIIEWL-----HRSGLPRTLSLLIIYLLFFGGIGYGL 89

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
           Y G+  + E ++ +  +          L  +       E      S        +E F+ 
Sbjct: 90  YKGVPVLIEQLTDLSESIPGIAETYDGLL-LKLHDHTDEWPDGIHSRMDRFIQRTEEFVA 148

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 I            DY L    +   +F+  +D   + + +  L    +      
Sbjct: 149 KTIEGTIRSI-----RFVFDYILIAATIPFLVFYMVKDIDLMKKTVWYLTPKSWRKRGSA 203

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             R V   +     G  ++    GL  G ++W   +P  + LG+I  +  +IP   P+  
Sbjct: 204 FLRDVDDSLGDYIRGQLLVCFLIGLGAGVSFWFFDLPYPLILGLIIGLTNVIPYFGPVIG 263

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ + +  +      + +   I  F+    L P +VG  +K+  +     L+ G   
Sbjct: 264 AVPALLIAMAVSAKAVITVVITILILQFLEGNILSPLIVGRSLKMHPVVIMLALLAGGEL 323

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            G++G+ +     A++ V+    +    E+
Sbjct: 324 AGIIGMIVAVPAAAVLKVMMIHFLRMRTEH 353


>gi|212716396|ref|ZP_03324524.1| hypothetical protein BIFCAT_01319 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660649|gb|EEB21224.1| hypothetical protein BIFCAT_01319 [Bifidobacterium catenulatum DSM
           16992]
          Length = 512

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/358 (11%), Positives = 118/358 (32%), Gaps = 23/358 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYF--------LKGFFAPVLSALIIGFTSWPIYSSFISK 54
           ++   P+ + R ++   I + ++         ++     ++ +L I     P+    +  
Sbjct: 35  DSRKPPEWLGRALLYIAIAIVVFTFCWRSWGKIEYLVIDIIVSLFIALAVEPMVVPLVKH 94

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
                +F ++ + + +  +  V         + ++  LV+ +    +             
Sbjct: 95  -GWKRSFASLFSLLMLAVILGVLFTLFGNLFVQQVIALVNGLPDLYEQMCQ--------- 144

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
              + S+     L    +L       ++T+ +      A         + ++++ +I+  
Sbjct: 145 ---FVSQYANFRLPEINNLGNEILKNIQTSWVTDFAGTALNTVSGLFSFLINLMTVIMTT 201

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           ++    G  + +             +  +  +    I S      I+A+      G    
Sbjct: 202 YYISAAGPKLRRAACQWMAPAAQRRFLFVWTVSQSQISSFLFSRAILALLNAFFTGICLM 261

Query: 235 LAGVPSHVALGVITAIMA-MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           L  VP  + L +   +++  IP  G  I      ++      ++ A  + ++  +   I 
Sbjct: 262 LLHVPYWLPLALFCGMVSQFIPMLGTYIGGALPVLFAWGSCGLWQAVVVLMFICVYQQIE 321

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +    P +    + +     F  ++      G LG F+   ++A +  I++      +
Sbjct: 322 NLIFAPKISQRTMDINDAVAFLAVLAFTSLFGALGAFLALPVVASVQTIFRTYTKRYE 379


>gi|294501508|ref|YP_003565208.1| sporulation integral membrane protein YtvI [Bacillus megaterium QM
           B1551]
 gi|294351445|gb|ADE71774.1| sporulation integral membrane protein YtvI [Bacillus megaterium QM
           B1551]
          Length = 369

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/347 (14%), Positives = 122/347 (35%), Gaps = 16/347 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFA----PVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            + R   +  I+ +  FL  + +    P + A  I F   P+ + F  K         ++
Sbjct: 8   RLFRLACVLTIIAASIFLSYYVSSLIYPFIIACCIAFFINPMVNLFELKLRLPRYLAVLL 67

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD---IPGGMWASEL 122
           + V +  L    +  L    +     L   V    +  +     ++    +P     + +
Sbjct: 68  SMVLIFSLLAGLITLLITEIIAGSTYLAKVVPTNFKEVVIFIENIATEQILPFYERITSM 127

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGM-------IFLDYCLSIIFMIIALF 175
           +    +  Q+  + +   +  +    +  F             +  +    IIF ++A F
Sbjct: 128 FNNLNTGQQATILSNIKGVGNHIAQTVGDFLQNVLQSIPVLLSVLPNAATVIIFSLLATF 187

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F  +D + +  +             + +   +   +         +     +++     +
Sbjct: 188 FISKDWYKLMAKSSVFIPKKVRENGQTVVVELKNALFGFIKAQLTLISITTIIVLFGLLV 247

Query: 236 AGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
             V   + + ++  ++ ++P  G  + F    IY     N+  A  L +  A+ L +  +
Sbjct: 248 LRVDYAITVALLIGLVDILPYLGTGLVFVPWMIYAFATDNVSFAVGLSVLYAVVL-VQRQ 306

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            + P ++   I L  L T   L  G + +G  GL +GPV++ ++  +
Sbjct: 307 IMEPKILSSSIGLDPLATLIALFVGYQLIGFFGLIVGPVILVILKTL 353


>gi|312127608|ref|YP_003992482.1| hypothetical protein Calhy_1396 [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777627|gb|ADQ07113.1| protein of unknown function UPF0118 [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 351

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 126/359 (35%), Gaps = 16/359 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLK------GFFAPVLSALIIGFTSWPIYSSFISK 54
           M    L  +     + + +I + +YF            P L AL + +   P       K
Sbjct: 1   MHIINLVKRYFTDILFIALIAIVIYFFANMKAFWPILIPFLIALFLSYLLKPWVDFLEKK 60

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
                    +I+   +  + I+  ++     + E K+L+  V    +H   + +W  +I 
Sbjct: 61  VRSRD-ISILISFAIIFGITIMVFVYFIPLFVSETKQLIQNVP---EHIALIQKWFFEI- 115

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                ++L         +  I  E   K     F+               L  + + I  
Sbjct: 116 DSKLLNKLNIDIKEILNANSINIEGISKQTLSIFL-----NIVKSISSNILYYLLIPIIS 170

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           F+  RD   +   +  L    +      I   + +V+     G  + A   GL+    + 
Sbjct: 171 FYILRDWKRLVMWIKWLLPEKYRKEGLYIFADINRVLHQYIRGQLLDAFIVGLLSFVGFS 230

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           L  V     LGVIT I  +IP   PI  +  ++ + +  +   A  + ++  +   +   
Sbjct: 231 LLSVRYAALLGVITGIGNLIPYFGPIFSSIPAVIIALSDSYIKAILVVIFLVLLQQVDSF 290

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            + P ++G  + L  L     ++   +  G + +F    + A+I +I+   +  IK  K
Sbjct: 291 IISPRVIGSKVGLHPLTIIIVIILANKIFGFVAMFFAIPIAAVIKIIFINIMKRIKSEK 349


>gi|153808650|ref|ZP_01961318.1| hypothetical protein BACCAC_02949 [Bacteroides caccae ATCC 43185]
 gi|149128476|gb|EDM19694.1| hypothetical protein BACCAC_02949 [Bacteroides caccae ATCC 43185]
          Length = 377

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 66/364 (18%), Positives = 134/364 (36%), Gaps = 20/364 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFL----KGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M    +     +R  I  +++V +  L     G   P   A +I +  +P+   F  K +
Sbjct: 1   MERKKITFDSFIRGAIGCVLVVGILMLVERLSGVLLPFFIAWLIAYMVYPLVKFFQYKLK 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
             S  ++++  + ++ +  V L +L       +  ++S++   N   +      +     
Sbjct: 61  LKSRIVSILCALFLITVVGVSLFYLL------VPPMISEISRMNDLLVTYLTNGAGNNVP 114

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGM---IFLDYCLSIIFMIIA 173
              SE   +++      +ILSE  +     D +PR  +       I      S I ++  
Sbjct: 115 QNLSEFIHENIDLQALNRILSEENILAAIKDTVPRMWALLAESLNILFSILASFIILLYV 174

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           +F    D  +I++    L  + +  +   +   V   +   F G  ++A   G++    +
Sbjct: 175 IFILL-DYEAIAEGWLHLLPNKYRTFASNLVHDVQDGMNRYFRGQALVAFCVGILFSIGF 233

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI----KGNIFNATC--LFLWGAI 287
            +   P  +ALG+    + M+P    I F    +  ++     G  F           AI
Sbjct: 234 LIIDFPMAIALGLFIGALNMVPYLQIIGFLPTVLLAILKAADTGQNFWIIIACALAVFAI 293

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              I D  L P ++G    L        L      MG+LG+ I   L  L+   ++  I+
Sbjct: 294 VQIIQDTFLVPKIMGKITGLNPAIILLSLSIWGSLMGMLGMIIALPLTTLMLSYYQRFII 353

Query: 348 AIKE 351
             ++
Sbjct: 354 NKEK 357


>gi|86608241|ref|YP_477003.1| hypothetical protein CYB_0757 [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556783|gb|ABD01740.1| putative membrane protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 417

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 52/307 (16%), Positives = 117/307 (38%), Gaps = 9/307 (2%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRW 109
              +         V+  +S++       L +      + + L++++     Q  + V  W
Sbjct: 52  LAERLRIPRWLGVVLVYLSLIAGIAGLALLIGPTVATQTQRLLTRLPFYLEQLQLLVDTW 111

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
           ++D+ G   A+  +   L  PQSL   +           +   +  F    L   L+ + 
Sbjct: 112 IADLAGVDPAALDYLNQLLDPQSLMSWA-----VRSGQRVLVQSFDFTRGLLGGLLTTVL 166

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
            +    +    G  + + L  L  + +     +    + + +     G  +++   G+++
Sbjct: 167 TLFISGYMLVSGSDLVRGLVELFPYPWNDRLAQQVHPMAQRMGGYIQGRVLVSAILGVMI 226

Query: 230 GSAYWLAGV-PSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
             +    G+    +ALGVI     +IP  G  +      +  +++G       L L+   
Sbjct: 227 TVSLRFLGLSEFALALGVIAGFTNLIPFIGPVLGSLPALVVAIVQGGWTFLWVLILY-VA 285

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              +    L P LVG  +++  L     ++GG + +G++G  I P  +A +AV+ +   +
Sbjct: 286 VQNLETYVLDPLLVGSSVRVKPLYQLLAVLGGTQLLGIVGAVIAPPWVAGMAVLLENLYL 345

Query: 348 AIKENKE 354
             K+  E
Sbjct: 346 KPKQEAE 352


>gi|320546652|ref|ZP_08040964.1| permease [Streptococcus equinus ATCC 9812]
 gi|320448707|gb|EFW89438.1| permease [Streptococcus equinus ATCC 9812]
          Length = 371

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 56/335 (16%), Positives = 125/335 (37%), Gaps = 14/335 (4%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV---IATVSVMCLFIVPLLFLFYY 84
             F      A I+      +Y    ++  ++   L +   ++ +     F++ + +LF  
Sbjct: 40  HPFMIGAGIAYIVNIVMS-LYEMIFTRLIKNKYLLKLKRAVSMILAYLTFMLLISWLFSI 98

Query: 85  GMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
            + ++   ++ ++  +  G     + +SD          +        +L   S+  L  
Sbjct: 99  VLPDLIASINSLLKIDTSGFSKFIKEVSDNKAVQEFLAYFGSSSDITATLSDYSKQILNQ 158

Query: 144 NG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
               +  I    S      L+  +S +F I  L         + +Q + L +     Y K
Sbjct: 159 VLAVLTNILTSVSTIASTLLNVFISFVFSIYVL----ASKEQLGRQFNLLIDSYLGKYAK 214

Query: 202 KI---SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
            +     I+ K     F+G T+ A+  G +     +L  +P    +G++ A  A+IP   
Sbjct: 215 TVHYVLDILHKRFHGFFVGQTLEAMILGSLTAIGMFLFKLPYAATIGILVAFTALIPVVG 274

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
                 +   L+   ++  A    ++  +        + P +VGG I LP +     +  
Sbjct: 275 AYIGVTIGFILIATQDVSQAIFFVIYLVVLQQFEGNIIYPRVVGGSIGLPGMWVLMAITI 334

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G    G+LG+ +   L A +  + K+++   ++N+
Sbjct: 335 GASLWGVLGMLVAVPLAASLYQMIKDNVAKRQKNR 369


>gi|228966252|ref|ZP_04127312.1| hypothetical protein bthur0004_30660 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228793436|gb|EEM40979.1| hypothetical protein bthur0004_30660 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 352

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 121/326 (37%), Gaps = 5/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + FLK  F PVL A ++ +   P + S + KK  S         + V+ LF+
Sbjct: 20  ISFVFTPFIVFLKTIFFPVLLAGVLFYILHP-FVSLLEKKGVSRIVSIASIYLIVIGLFV 78

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             ++ +      ++  L+  +           R      G         ++L+   +  +
Sbjct: 79  FLVVTVIPIIKDQIDALIDNLPYFGHEIEQAARRF----GESNLLGKIQENLNINVANMV 134

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   T  +  +    + F     +  L+ + +   LF+  +DG  +           
Sbjct: 135 KDYTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQ 194

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +I   +   I S   G  I+++  G++L   Y + G+   V L ++  I+ ++P
Sbjct: 195 RQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVP 254

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI     ++ +    +      + +   +      K + P ++G  + +  +   F 
Sbjct: 255 YVGPIIAITPALIIAFIDSPAMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFI 314

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++      G++G+ +     A++ V+
Sbjct: 315 ILTAGNLFGIMGIILAIPGYAILKVL 340


>gi|289768697|ref|ZP_06528075.1| conserved hypothetical protein [Streptomyces lividans TK24]
 gi|289698896|gb|EFD66325.1| conserved hypothetical protein [Streptomyces lividans TK24]
          Length = 402

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 52/358 (14%), Positives = 115/358 (32%), Gaps = 16/358 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF--LKGFFAPVLSALIIGFTSWPIYSSFISKKEES 58
           M   +     +   +I    L S  F  L G    VL A  +     P  S    +    
Sbjct: 1   MPRWLPRAMVLALALIAAFQLGSWAFHQLTGLLINVLIAFFLALAIEPAVSWMAGR-GMR 59

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
             F   +  ++V+      +  L      ++ ++V +              + +   G +
Sbjct: 60  RGFATFLVFLAVLIAAAGFVTLLGSMLAGQIVKMVEEF-------PDYLDSVINWVNGHF 112

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            +EL    +            +++ +    +   A   G +F      ++ +++  F+F 
Sbjct: 113 HTELRRVDIQEGLLRSDWLRNYVQNSATGVLDVSAQVLGGLF-----QLLTVLLFSFYFA 167

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            DG  + + L S+      A   +   I             ++A+  G+       +  V
Sbjct: 168 ADGPRLRRGLCSVLPPARQAEVLRAWEIAVDKTGGYLYSRGLMALVSGVAHYILLEILEV 227

Query: 239 PSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P   AL V   +++  IP        A+ + +    N + A  + ++  I     +  L+
Sbjct: 228 PYAPALAVWVGLVSQFIPTIGTYLAGALPMLIAFTVNPWYALWVLVFVVIYQQFENYVLQ 287

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           P L    + +     F  ++ G   +G +G  I    +A +       +       + 
Sbjct: 288 PKLTSKTVDIHPAVAFGSVIAGTALLGAVGALIAIPAVATLQAFLGAYVKRYDVTDDP 345


>gi|325924381|ref|ZP_08185920.1| putative permease [Xanthomonas gardneri ATCC 19865]
 gi|325545142|gb|EGD16457.1| putative permease [Xanthomonas gardneri ATCC 19865]
          Length = 389

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/339 (14%), Positives = 130/339 (38%), Gaps = 13/339 (3%)

Query: 12  MRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++W+ + + +L  +  L     P + AL++ +   P+          S      +  V  
Sbjct: 16  LKWVAVIVGVLWVVSLLSPILTPFVLALLLAWLGDPLVDRIERA-GRSRNMAVSLVFVLA 74

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + LF++ L+ L      ++  L+  +       I      + IP     + +       P
Sbjct: 75  LLLFVLALMILVPMIERQIMTLIDALPQMRTWAIS-----TAIPWLEAKTGVELMGWLDP 129

Query: 131 QSLKILSETFLKTNGI--DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           + L     +  +  G        +  R G   + + +++  + I  F+F RD   + +++
Sbjct: 130 ERLIDWIRSHWEQAGGAAKTFFGYVQRSGFAMVTWVINLALLPILAFYFLRDWDRLVERV 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            ++    +     +++     V+     G  ++ +  G++  +   + G+   + +G+I 
Sbjct: 190 AAVIPRAYIGTVSRLALESNDVLGGFIRGQFLVMLALGVIYATGLSIIGLNLGLLIGIIA 249

Query: 249 AIMAMIP---GGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
             ++ IP       I    ++  +  +G ++     + +   +   +    L P +VG  
Sbjct: 250 GFISFIPYLGATTGIVLALLAAVVQAQGLDLKLLIGVGVVFTVGQLLESYVLTPRIVGDK 309

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           I L  +   F ++ G +  G LG+ +   + A+  V+ +
Sbjct: 310 IGLHPVAVIFAVMAGGQLFGFLGMLLALPVAAVANVLLR 348


>gi|289641569|ref|ZP_06473731.1| protein of unknown function UPF0118 [Frankia symbiont of Datisca
           glomerata]
 gi|289508664|gb|EFD29601.1| protein of unknown function UPF0118 [Frankia symbiont of Datisca
           glomerata]
          Length = 421

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 93/292 (31%), Gaps = 14/292 (4%)

Query: 37  ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV 96
            L++    +P       +        + +     + L     + + +    E   L  +V
Sbjct: 120 GLLVSALIYPTAMRL-RRHGVPKLVSSFVTVFGFLILVAGAGVGVGFNAANEFPSLSDQV 178

Query: 97  VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
               +    V  +L D P  +  S+L          L       L  N    +    S  
Sbjct: 179 SQGVE---QVRDYLRDGPLHLSQSQL--------DDLTNDITRTLANNRGRLVSGVLSG- 226

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
             +  +    I+  + A FFF  DG  I   + +          +   +     +     
Sbjct: 227 ATVAAEVLTGILLTLFATFFFVHDGDRIWDWIVTRFPPGTEERVRGAGKEAWATVTGYIR 286

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNI 275
           G   +A+ + + +     + GVP    L ++T +   IP  GA ++  A  +  L+   +
Sbjct: 287 GTMFVALVDAIGITIGLLVVGVPLVAPLALLTFLGGFIPIVGATVAGVAAILVTLVSNGL 346

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
             A  +         I    L+P ++   ++L  L     L  G    G+ G
Sbjct: 347 VPALVILGVVLAVQQIEGHLLQPLVMRRAVRLHPLAIVVSLSAGGVLAGIPG 398


>gi|257439022|ref|ZP_05614777.1| putative membrane protein [Faecalibacterium prausnitzii A2-165]
 gi|257198512|gb|EEU96796.1| putative membrane protein [Faecalibacterium prausnitzii A2-165]
          Length = 403

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 55/344 (15%), Positives = 117/344 (34%), Gaps = 17/344 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWP--------IYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           L G   P +   +I +   P        ++  F  +    +  LAV  T+    L I  L
Sbjct: 45  LTGILMPFIYGSVIAYLLKPVCNWIEAFLHKLFPERMHRFANMLAVALTILFGLLLIYAL 104

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + +    ++     +     A  +      W+S         +L     S   SL    +
Sbjct: 105 IMMIVPQLINSVTALYF--TARDNIGDFVEWISKQEFIANNKKLLDFIESSYDSLDANLD 162

Query: 139 TFLKTNGIDFIPRFASRFGMIFL-------DYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            ++K   +  +    S   +  +       ++ + +I  +  L    + G      L SL
Sbjct: 163 AWIKNTLLPSMQNILSGAAVGVVNVVTWIKNFVIGLIVSVYLLASRKKFGQQGKLILYSL 222

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
            +  +     +  R   ++      G  + +   G++   A  +   PS + + VI  + 
Sbjct: 223 VKPRWADLIMEEVRYADRMFGGFINGKILDSAIIGVLCYIACLIFKFPSALLVSVIIGVT 282

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP   P      +  L++  N   A    L+  +   +    + P ++G    L    
Sbjct: 283 NVIPFFGPFIGAIPATLLILIQNPIKALWFVLFVLVLQQVDGNIIGPKILGNTTGLSSFW 342

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             F ++      G +G+ IG  L A+I  + K+ +       ++
Sbjct: 343 VLFAILLFGGLWGFVGMIIGVPLFAVIYDVIKKLVFHGLNRNDE 386


>gi|108805764|ref|YP_645701.1| hypothetical protein Rxyl_2979 [Rubrobacter xylanophilus DSM 9941]
 gi|108767007|gb|ABG05889.1| protein of unknown function UPF0118 [Rubrobacter xylanophilus DSM
           9941]
          Length = 387

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/315 (13%), Positives = 109/315 (34%), Gaps = 7/315 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + + +V +  + G     L A ++ +   P+     + +   +    +    +++     
Sbjct: 29  LVLAVVLIRQIGGVLLTFLMAGVLAYALNPLVRRLEAMRVPRA-LAVLGVFAALLAAVFA 87

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKI 135
            LL +    + +++ L+    +  +    +  W   +P  G   S +  + +       +
Sbjct: 88  VLLVIIIPAVNQVQALLRNPQVVAEAAANLLAWAEGLPYVGERISAVDREAVLAFVQSNL 147

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                +    + FI      FG       L+++FM+I   +   D   I +   SL    
Sbjct: 148 PPAGTMLKAALGFIGGVFGVFGT-----ILNLVFMLIVAIYMLLDRERIRRGALSLIPPT 202

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   V   +        ++ +  G++  +  +  G    + +GV   +  +IP
Sbjct: 203 VRGNVLELFSAVEGALVRYLKAQLLLCVLMGVIGWAIVFFTGGEYALLIGVWVGVTELIP 262

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P+     ++ L +  +   A  +         +    L P ++GG + +  L   F 
Sbjct: 263 VLGPVLGAIPAVVLALVESPLKALLVAGLFLAAQQLEGNVLVPRIMGGSVGVHPLWVMFA 322

Query: 316 LVGGVRTMGLLGLFI 330
           ++      G++G   
Sbjct: 323 MLSATALYGIVGALF 337


>gi|271963232|ref|YP_003337428.1| permease-like protein [Streptosporangium roseum DSM 43021]
 gi|270506407|gb|ACZ84685.1| permease-like protein [Streptosporangium roseum DSM 43021]
          Length = 443

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 106/317 (33%), Gaps = 15/317 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
              V+ A+ +     P   S   ++     +   I   +V+  F++  L +      E  
Sbjct: 136 IVLVVVAMFLALGLNPAVESLQRRRLARR-WAISIVFGAVILFFVLFGLAIVPPVSQEAA 194

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
             +S V    Q  +  P                 +  S  Q L  + +          + 
Sbjct: 195 SFISAVPGYTQELLANPT--------------LKELDSDYQILTRIGDYITSGGLAQTVA 240

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                 G +  +   S + +++   +F     SI   L  L         + +   +   
Sbjct: 241 GGLVGAGAVVFNAFFSGVTLLVLTLYFLGSLPSIKDYLFRLVPSSRRERTRGLGDEIISG 300

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           I     G  +I++  G+V       AGV   +AL ++ A+  +IP         +   + 
Sbjct: 301 IGGYVAGNLLISVIAGVVTWVFLAFAGVEYALALALVVAVTDLIPLVGATIGAVLVSGVA 360

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +  +        ++  +   + +  + P ++   + +    T    + G   +G++G  +
Sbjct: 361 LLQSGTLGIACAIFFLVYQQVENYLIYPRVMKRSVDVAPAVTVIAALFGGALLGIVGALL 420

Query: 331 GPVLMALIAVIWKESIM 347
              + A IA+I +E ++
Sbjct: 421 AIPVAAAIALIIREVVI 437


>gi|324998560|ref|ZP_08119672.1| hypothetical protein PseP1_07332 [Pseudonocardia sp. P1]
          Length = 404

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 73/216 (33%), Gaps = 1/216 (0%)

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            +    +   A        +        + AL F   DG  +   L  L           
Sbjct: 172 QDNQQTLTSGAVSTAATVGEVLAGFALCLFALIFMLYDGSRLWSFLRLLAPARRRERVDV 231

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
             R     +        ++AI + + +G   W+ GVP  + L  +  + A +P  GA ++
Sbjct: 232 AGRRAFASLVGYVRATVLVAIVDAIGIGLGLWITGVPLALPLTALVFVGAFVPIVGAVLT 291

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
                +  L+   I  A  +         +    L+P L+G  ++L  L     +  GV 
Sbjct: 292 GGIAVLIALVANGIGTALVVLGVVLAVQQLESHVLQPVLMGRAVRLHPLAIALAVAAGVV 351

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
             G+ G  +   LMA++    +      +   E++ 
Sbjct: 352 IAGITGALLAVPLMAVLTAAVRSLAAPHEVAPEQVD 387


>gi|269837139|ref|YP_003319367.1| hypothetical protein Sthe_1109 [Sphaerobacter thermophilus DSM
           20745]
 gi|269786402|gb|ACZ38545.1| protein of unknown function UPF0118 [Sphaerobacter thermophilus DSM
           20745]
          Length = 357

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/336 (14%), Positives = 113/336 (33%), Gaps = 6/336 (1%)

Query: 13  RWMIM----FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           RW+++     ++   L+  +    P L   II +   P          +      +   +
Sbjct: 12  RWLLVTAAVLVVFWVLWRTRDALLPFLLGAIIAYLLAPAVDLLQRALPQQGRLARLARPL 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +++  ++  L  L   G   +  L+ + V   +        +      +           
Sbjct: 72  AILLAYVFALAILTVAGFYLVPPLIDQTVEFVRDLPSYWDDVRRESNALMRLYEARVPED 131

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIF--LDYCLSIIFMIIALFFFYRDGFSISQ 186
             + ++       +  G          FG +   + +   ++ + + LF+  +D     +
Sbjct: 132 MRRQIEANLGALGQQVGTAARTAMMVTFGAVTTIIGFAAGLLLLPLWLFYVLKDQQRGLE 191

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
               L    +    + I  +V  V+ +   G   + +  G+V G   WL G+P  + LGV
Sbjct: 192 WFYGLWPESWRPDVRAIVGMVDDVMSAYVRGQLFLGVVIGVVTGITMWLIGIPQSLVLGV 251

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +     +IP   P      +  + +         + +       + +  L P + G  ++
Sbjct: 252 LAGFFELIPVLGPWLAFVAAALVTLATEPDRILFVGIAFLAIQQLENTFLVPKIQGDAVR 311

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +        LV G    G+LG+     L A++  I+
Sbjct: 312 VHPALIMVLLVVGGSLWGVLGMIFIVPLTAVLRDIF 347


>gi|170782573|ref|YP_001710906.1| putative integral membrane protein [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169157142|emb|CAQ02322.1| putative integral membrane protein [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 382

 Score = 84.1 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 58/336 (17%), Positives = 115/336 (34%), Gaps = 16/336 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q +   ++   I+ +   LK    PV+ ALI+     P+      +        AVIA +
Sbjct: 21  QILAVLVVAIAIVYAAISLKLVVIPVIIALILACAVRPMVLWMERR-GVPDALAAVIALL 79

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           + + LF   +  + +    +   LV                            L    + 
Sbjct: 80  TGLVLFGGAVTAVVFGVQSQWPTLVKATSEGVDQLQAFIEEGGLPIDSAQIDSLRQSAVD 139

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S +  S      +    +   A              +  ++  FFF +DG  I    
Sbjct: 140 FLTSSQFGSGAIAGVSAAAEVVTGA--------------VLGLVVFFFFVKDGPQIWAFF 185

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        ++     KV+     G   +A+ + + +G+  ++ GVP  + L ++ 
Sbjct: 186 IRPFRGRGRKRAVRVGHEGSKVLGGYIRGTATVALVDTVFIGAGLFILGVPLALPLSLVV 245

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I A +P  GA ++    ++  L+  ++  A  +     +   +    L+P ++G  +KL
Sbjct: 246 FIGAFVPIVGATVAGILAALVALVTNDLGTAIWVVAIVILVNQLEGNLLQPVVLGNALKL 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             L     L  G    G++G  +   L A+    WK
Sbjct: 306 HGLVVLLALTAGTILGGIIGAILSVPLTAVAWTAWK 341


>gi|294814765|ref|ZP_06773408.1| Putative integral membrane protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294327364|gb|EFG09007.1| Putative integral membrane protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 465

 Score = 83.7 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/308 (14%), Positives = 104/308 (33%), Gaps = 21/308 (6%)

Query: 17  MFIILVSLYFLKGFFAPV-------LSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           + ++  +L+ L    + V        SAL+I     P  +  + +          +  ++
Sbjct: 100 LLVLAGTLWVLMRVISAVQLVVLAFASALLITALLQPTVARLL-RIGLPRGLATAVTAIA 158

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              +  +   F+ +  M  +  L  +V    Q    +  W  + P  +   ++     + 
Sbjct: 159 GFAVMALVGWFVVWQVMENLDTLSDRVREGIQE---LRLWALEGPFHVSEGQINDLADNL 215

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             ++   +E          I     +     +++    +  + +  F   DG  I Q   
Sbjct: 216 SDTIGSNTEE---------ITSAGLQGVTALMEFLAGALLAMFSTLFLLHDGPRIWQWTL 266

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L                   + +   G  ++A+ + + +G   W   VP  V L V   
Sbjct: 267 KLVPAQARPGVASAGPRAWATLTAYVRGTVLVALIDAIFIGLGIWFLDVPMAVPLAVFVF 326

Query: 250 IMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           + A +P  GA +S     +  L+   +F A  + +       I    L+PF++G  +++ 
Sbjct: 327 LFAFVPLVGAVLSGALAVVVALVTQGVFTALMVLIVVLAVQQIEGHVLQPFILGRAVRVH 386

Query: 309 FLPTFFGL 316
            L     +
Sbjct: 387 PLAVVLSV 394


>gi|313791669|gb|EFS39787.1| conserved hypothetical protein [Propionibacterium acnes HL110PA1]
 gi|315077482|gb|EFT49542.1| conserved hypothetical protein [Propionibacterium acnes HL053PA2]
 gi|315107201|gb|EFT79177.1| conserved hypothetical protein [Propionibacterium acnes HL030PA1]
 gi|327455112|gb|EGF01767.1| hypothetical protein HMPREF9584_01067 [Propionibacterium acnes
           HL092PA1]
          Length = 385

 Score = 83.7 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 58/329 (17%), Positives = 120/329 (36%), Gaps = 15/329 (4%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            PV  AL++    WP+ +   S+        + I  + ++ L       +     L+ ++
Sbjct: 64  VPVAVALMLTAAMWPLANWL-SRHHIHRGIASGICLLLLVILVGGVFTLVGAQIALQWRQ 122

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L  + V + +  +   +WL+  P           H +  Q   ++ +      G      
Sbjct: 123 LGDQSVASFKQAL---QWLAKSP----------LHTNEAQLTHLMQKAEAAMAGSQGRIA 169

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
             +  G     +   ++  + A FFF  +G  ++++   L      A     ++     +
Sbjct: 170 STAAAGSQIGRFGAGLVMALFATFFFVYEGDKLAEKSAVLIPREHRAAILDAAKRGWVAL 229

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLL 270
            +      I+A  +GL  G    + G    VA+G +T I+A +P  GA  +       +L
Sbjct: 230 VAYVRAAVIVAFVDGLGAGIGAAIIGSSMSVAIGALTFILAFVPIVGALTAGVVAVGVVL 289

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +    F A  + +     + I    L+PFL+G  + +  L    G+  G    G++G   
Sbjct: 290 VTLGFFKAFIMLIVFVAVMQIEGHVLQPFLLGKAVSIHPLIVLLGIAVGAIISGIVGALF 349

Query: 331 GPVLMALIAVIWKESIMAIKENKEKISSN 359
              ++A      K        N+   + +
Sbjct: 350 AIPIVAFGVAFIKALNPETPANEVPPNHD 378


>gi|145596127|ref|YP_001160424.1| hypothetical protein Strop_3615 [Salinispora tropica CNB-440]
 gi|145305464|gb|ABP56046.1| protein of unknown function UPF0118 [Salinispora tropica CNB-440]
          Length = 412

 Score = 83.7 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/324 (14%), Positives = 117/324 (36%), Gaps = 18/324 (5%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             PV+ A+ +    +P  +    +          +  ++++ LF   ++ L    + +  
Sbjct: 106 LVPVVIAVFLAVGLYPAVARL-RRLGLPHGLAVAVVMLTLLLLFCSGVVALVPPVVTQSN 164

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           + + +           P +L  +      +EL  ++    ++ +      L       + 
Sbjct: 165 QFIEQF----------PSYLEALQRNETVNELIERYDLVERAQQAADTDALGQALGGVLG 214

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                FG  F    + ++      +F       +     +L         + I   +   
Sbjct: 215 GAQLIFGTAFRTLTVLVLTTYFLAYF-----NRLRSLGYALVPRSRRDRVRLIGDEIIVK 269

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
           + +  +G  IIAI  G        +A +P   AL V+ A+  +IP  GA +    VS+  
Sbjct: 270 VGAYIVGALIIAILAGTTTFVFALIAELPYPFALAVVVAVTDLIPQIGATLGAVIVSLVG 329

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
               ++       L+  I   + +  + P ++   +++  +      + GV  +G++G  
Sbjct: 330 FAT-DLPVGIACVLFFLIYQQVENYLIYPKVMRRSVQVNEVAALVAALLGVALIGVVGAL 388

Query: 330 IGPVLMALIAVIWKESIMAIKENK 353
           I    +A   +I +E ++  ++++
Sbjct: 389 IAIPTVAAFQLILREVVIPRQDSR 412


>gi|65320647|ref|ZP_00393606.1| COG0628: Predicted permease [Bacillus anthracis str. A2012]
          Length = 350

 Score = 83.7 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 121/326 (37%), Gaps = 5/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + FLK  F PVL A ++ +   P + S + KK  S         + V+ LF+
Sbjct: 18  ISFVFTPFIVFLKTIFFPVLLAGVLFYILHP-FVSLLEKKGVSRIVSIASIYLIVIGLFV 76

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +L +      ++  L+  +           R      G         ++L+   +  +
Sbjct: 77  FLVLTVIPIIKDQIDALIDNLPYFGHEIERAARRF----GESNLLGKIQENLNIDVASMV 132

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   T  +  +    + F     +  L+ + +   LF+  +DG  +           
Sbjct: 133 KDYTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQ 192

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +I   +   I S   G  I+++  G++L   Y + G+   V L ++  I+ ++P
Sbjct: 193 RQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVP 252

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI     ++ +    +      + +   +      K + P ++G  + +  +   F 
Sbjct: 253 YVGPIIAITPALIIAFIDSPGMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFI 312

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++      G++G+ +     A++ V+
Sbjct: 313 ILTAGNLFGIMGIILAIPGYAILKVL 338


>gi|320008818|gb|ADW03668.1| protein of unknown function UPF0118 [Streptomyces flavogriseus ATCC
           33331]
          Length = 466

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/308 (14%), Positives = 108/308 (35%), Gaps = 21/308 (6%)

Query: 17  MFIILVSLYFLKGFFAPV-------LSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           + ++  +L+ L    + +       ++AL++     P       +          +  V 
Sbjct: 87  LLVLAGTLWILMRVISAIQLVVLAFVAALLVTALLQPTVVRL-RRLGLPRGLATAVTAVL 145

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              +  +   F+ +  M  +  L  +V         + RWL D P  +  S++     + 
Sbjct: 146 GFVIMGLVGWFVVWQVMDNLDTLSDRVRDGIDE---LKRWLLDSPFHVTESQINDIAKNL 202

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             ++   +E          I     +   + ++    ++  + +  F   DG  I Q + 
Sbjct: 203 SDTIGTNTEE---------ITSAGLQGVTVMVEVLTGLLLAMFSTLFLLYDGKRIWQWVL 253

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L                 + + +   G  I+A+ + + +G   +   VP  V L V   
Sbjct: 254 KLVPAQARPGVAGAGPRAWRTLTAYVRGTVIVALIDAIFIGLGIYFLDVPMAVPLAVFIF 313

Query: 250 IMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           + A IP    +   A+++ + L+   +F A  + +       I    L+PF++G  +++ 
Sbjct: 314 LFAFIPLVGAVVSGALAVVVALVTQGVFTALMVLIVVLAVQQIEGHILQPFILGRAVRVH 373

Query: 309 FLPTFFGL 316
            L     +
Sbjct: 374 PLAVVLSV 381


>gi|88859847|ref|ZP_01134486.1| putative permease (PerM family) protein [Pseudoalteromonas tunicata
           D2]
 gi|88817841|gb|EAR27657.1| putative permease (PerM family) protein [Pseudoalteromonas tunicata
           D2]
          Length = 355

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 51/348 (14%), Positives = 116/348 (33%), Gaps = 14/348 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +  + +   I+  LYF+     PVL A++I F   WP+    +++   S    + +
Sbjct: 15  DPHSVTLFFVSIAIVALLYFVGSLIIPVLVAVVIAFLLEWPVQK--MTQIGSSRLTASAL 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +    L I   + +      ++   + +     + G     +L  +P          +
Sbjct: 73  VMLCFSSLAIASFIGIVPVLWQQLANFLQEAPHMLEKG---KAYLLQLPAQYPELITSMQ 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +   +++     F        I   +       +   + +I + + +FF  +D   + 
Sbjct: 130 IQTLVGAVENKFIEF-----GQIILSSSLTSLKDIVALLIYLILVPLLVFFMLKDKKELV 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +  L          ++ R + + I +   G  I  +  G V    + L  +     LG
Sbjct: 185 GGVSRLLPEQRRLL-SQVWREMHQQIMNYIRGKVIEILIVGGVSFITFALFDLRYAALLG 243

Query: 246 VITAIMAMIPG-GAPISFTA-VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            +     +IP  GA +      ++ L   G       + +   I   +    L P L   
Sbjct: 244 ALVGFSVLIPFVGAALVTIPVAAVALFQFGLAPEFWYIIIAYGIIQALDGNVLVPVLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            + L  +     ++      G  G+F    L +L+  +        ++
Sbjct: 304 AVDLNPVYIIVAVLFFGGLWGFWGVFFAIPLASLVRALINAWSSEQEK 351


>gi|229198517|ref|ZP_04325221.1| hypothetical protein bcere0001_40450 [Bacillus cereus m1293]
 gi|228585020|gb|EEK43134.1| hypothetical protein bcere0001_40450 [Bacillus cereus m1293]
          Length = 361

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 50/311 (16%), Positives = 110/311 (35%), Gaps = 11/311 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L A  I +   P+      +            T++++ ++I+    + Y       
Sbjct: 49  ITPFLIACFIAYLLHPLIEKIHKEGMPR--------TLAILLIYILFFGGIGYGIYKGTP 100

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            ++ ++   N+      +       G+      T +       K+          I  + 
Sbjct: 101 VVIKQLQEINEQFPQFTKMYDSWMDGVTEQ---TANFPSFIHEKVKQIFVGVETKIQALL 157

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     LD  L I  +   +F+  +D          L    + +  + +++ + K 
Sbjct: 158 NKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQMLAKEIDKS 217

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G   + +  G V   ++W  G+   + LG+I  I  +IP   PI     ++ + 
Sbjct: 218 LGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGITDIIPYFGPILGAIPALMIA 277

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +        +  AI  F+    L P++VG  +++  +     L+ G    G++GL I
Sbjct: 278 ATVSTSLLIKAGITIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEVAGIVGLLI 337

Query: 331 GPVLMALIAVI 341
              ++A+I  +
Sbjct: 338 SVPVLAVIRTV 348


>gi|172058148|ref|YP_001814608.1| hypothetical protein Exig_2139 [Exiguobacterium sibiricum 255-15]
 gi|171990669|gb|ACB61591.1| protein of unknown function UPF0118 [Exiguobacterium sibiricum
           255-15]
          Length = 382

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/334 (11%), Positives = 111/334 (33%), Gaps = 1/334 (0%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L   F P++ A I  + +  I  +   + ++      +I  +  + +  + +  +    
Sbjct: 38  MLALIFPPLIIAGIFYYFTLGIVDTLQKRVKKR-GLAVLIVLLGFLGIITIAVASIGPIL 96

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++ + V+ +             L D          W    +          T      
Sbjct: 97  VDQVSDFVTSIPNLVVELRDQTLNLRDQLMNNRFISNWVHENTAMFDSWTNEATSYIGTL 156

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              +         +     L ++ +   L +   DG+     +  L    +    +KI  
Sbjct: 157 FKSVSTSVGTIFGVISSTVLIVVLVPFILVYMLLDGYKFPNSVVKLLPKSYETETRKILH 216

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   ++    G  I+++  GL+    ++++ +   + L +   +  +IP   P      
Sbjct: 217 DMHVTVKHYVNGQVIVSLCVGLMSLIGFFISDIQYALLLALFCTVTNIIPYLGPYIGAVP 276

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ +    +   A    +   +   I    + P++ G  +K+  L     L+   +  G+
Sbjct: 277 AVIVGFIDDPIKALYAIITIVVAQQIESNLISPYVQGKTLKVHPLTIIIVLLVAGKIGGI 336

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +G+ +     A+  V+ +      +  ++K+   
Sbjct: 337 IGVILAVPTYAVTKVVVQNIARIYRLRQQKLDVQ 370


>gi|262382754|ref|ZP_06075891.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262295632|gb|EEY83563.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 385

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 64/360 (17%), Positives = 133/360 (36%), Gaps = 23/360 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   +++  I+  +  L+    P L A ++ +   P    F  K    S  L+++A +
Sbjct: 16  RIVFGILVISGIIYLIALLRNALLPFLIAWLLAYMMQPFVKFFQYKLCFKSRILSIMAVL 75

Query: 69  SVMCLFIVPLLFLFY-YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             + L I  L+ +       E  + +  +   +     VP               W ++L
Sbjct: 76  VTLGLLITLLVVMVIPSIAAEADKTLELIRTHDPGEGHVP----------LIPHSWMEYL 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD-----YCLSIIFMIIALF-FFYRDG 181
               +   + E   K N +  + + A +   I  +     + ++I+F+I+  F F   D 
Sbjct: 126 ESNVNFAQIMELLSKENLLKAVKQIAPQLWSILSNTFSILFSITIVFVILLYFIFILLDY 185

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I+     L    +  + + ++  V   +   F G ++IA+  G++L   + +   P  
Sbjct: 186 EKIANGWIDLIPERYRPFLQGLAEDVEYSMNRYFRGQSLIALSVGVLLAIGFKIINFPLA 245

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGA------IELFIVDKT 295
           V LG+   ++ +IP    I    + +  L++          ++G       I   I D  
Sbjct: 246 VTLGLFIGVLNLIPYMQAIGIIPMILLSLLRSAETGENFWLIFGMAILVLGIVQCIQDLY 305

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L P ++G  + L        L      +G +GL I   L  L    +K  I+      + 
Sbjct: 306 LTPRIMGKAMGLNPAIILLSLSIWGTILGFIGLIIALPLTTLCLSYYKRFILHEDNELDP 365


>gi|163814598|ref|ZP_02205987.1| hypothetical protein COPEUT_00749 [Coprococcus eutactus ATCC 27759]
 gi|158450233|gb|EDP27228.1| hypothetical protein COPEUT_00749 [Coprococcus eutactus ATCC 27759]
          Length = 471

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 53/372 (14%), Positives = 119/372 (31%), Gaps = 26/372 (6%)

Query: 7   NPQGIMRWMIMFI-ILVSLYFLKGF-------------FAPVLSALIIGFTSWPIYSSFI 52
           N +  +R +++   +++  Y L  F               P +    I F          
Sbjct: 4   NKKDTIRILLILCGVVLFAYVLFNFDKVSSLFSWLVNILMPFVIGFAIAFVVNVPMKGLE 63

Query: 53  SKKEESSTFL------AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV 106
               ++               +S +C+  V   F     + EM + ++         +  
Sbjct: 64  KVLFKNENSRLYRFKRPACLILSFLCIIAV-FTFAITMIIPEMSKTITAFADKLPDAMDD 122

Query: 107 PRW--LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR---FASRFGMIFL 161
            +   +  +       +       +  S+       +K  G   +      AS     F+
Sbjct: 123 IQRKAIKLMKDQPEIVDKIKSIDINWDSVISNVVGIVKNGGSSVLSSTFSIASSVVGGFV 182

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
           D  + I F    L         +   L ++ +      + +   +  +       G  + 
Sbjct: 183 DVLVGIFFACYILAQKETLEKQVKGILYAVFKEDKADRFIQTCVLADRTFSKFISGQCLE 242

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL 281
           A   GL+      +  +P  + + +I A+ A+IP             +++  N   A   
Sbjct: 243 ACILGLMFFITMTIFRIPYALTVSIIIAVFALIPVIGAFVGCFAGAIMILVENPKQAIIF 302

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            +   +   I    + P +VGG + LP +     ++ G   MG+LG+ I   L +++  +
Sbjct: 303 LIIFIVLQQIEGNFIYPHVVGGSVGLPSIWVLVAVMLGGDLMGILGMLIFVPLFSVLYAM 362

Query: 342 WKESIMAIKENK 353
            +E ++     K
Sbjct: 363 SEEYVVKNLREK 374


>gi|306831279|ref|ZP_07464439.1| conserved hypothetical protein [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426515|gb|EFM29627.1| conserved hypothetical protein [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 372

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 122/331 (36%), Gaps = 12/331 (3%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV---IATVSVMCLFIVPLLFLFYYG 85
            F      A I+      +Y    ++  ++   L     I+ +     FI+ + +LF   
Sbjct: 41  PFLIGAGIAYIVNIVMS-LYEMLYTRVIKNRVLLKAKRAISMILAYLTFILLISWLFSIV 99

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++   ++ ++  +  GI    ++ ++       EL   +  +   +      + +   
Sbjct: 100 LPDLISSINSLLKIDTTGIA--NFIKEVSDNKAIKELL-DYFGNSSDITSTLSDYSQQIL 156

Query: 146 IDFIPRFASRFGMI--FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
              +         +       L++   ++   +       + +Q + L +     Y +K+
Sbjct: 157 NQVLSVLTGVLTSVSTIASTVLNVFVSLVFSIYVLASKEQLGRQFNLLIDTYLGKYAEKV 216

Query: 204 ---SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
                I+ +     F+G T+ A+  G +  +  +L   P    +G++ A  A+IP     
Sbjct: 217 HYVLDILHQRFHGFFVGQTLEAMILGSLTAAGMFLFSFPYAATIGILVAFTALIPVIGAY 276

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
               +   L+   ++  A    ++  +        + P +VGG I LP +     +  G 
Sbjct: 277 IGATIGFILIATQSVSQAFLFLVYLIVLQQFEGNVIYPRVVGGSIGLPGMWVLMAITIGG 336

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
              G+LG+ +   L A +  I K+++   ++
Sbjct: 337 ALWGILGMLVAVPLAASLYQIIKDNVAKRQQ 367


>gi|300173494|ref|YP_003772660.1| integral membrane protein [Leuconostoc gasicomitatum LMG 18811]
 gi|299887873|emb|CBL91841.1| Integral membrane protein [Leuconostoc gasicomitatum LMG 18811]
          Length = 384

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 52/325 (16%), Positives = 110/325 (33%), Gaps = 7/325 (2%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
           AP+L A ++ +   P+ +               I  + ++ +    L  + +    ++  
Sbjct: 56  APILIAGVLYYLLSPVVNLISKYTRLPRGISIGIILILLLAIIAGILTTVVFVLRSQVVT 115

Query: 92  LV-SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
              +     +     +               L   + +  Q++   S  +L T       
Sbjct: 116 FTDNWPSYWHTSQNFINETFKSDQFNPVREFLNHTNTNINQTVIDWSRKYLTTGVAGI-- 173

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              S F  I     ++ +     L++   DG   S+ +            +++   + K 
Sbjct: 174 ---SSFASILTTVGITAVATPFILYYMLLDGHKFSEFVAEKFPPQAQQSIQQLLTDISKQ 230

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
           I     G   +A    ++    + L G+P  + L ++  +  MIP  G+ I+   V    
Sbjct: 231 IAQYIRGQLGVAFAVMIMFSIGFTLIGLPYGILLALMAGLFNMIPYVGSIIAQVPVWTVA 290

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           LI G         +  AIE  I    + P ++G  + +  +     L+      G+LG+ 
Sbjct: 291 LIAGGPKMLVLAIIVLAIEQPIEGHVIAPKILGEALSIHPVTVIVVLLSSGHIFGVLGII 350

Query: 330 IGPVLMALIAVIWKESIMAIKENKE 354
           +     A++ VI     M  + N E
Sbjct: 351 LAVPTYAVVKVIVIRIYMWWRNNSE 375


>gi|89100377|ref|ZP_01173241.1| hypothetical protein B14911_07438 [Bacillus sp. NRRL B-14911]
 gi|89084896|gb|EAR64033.1| hypothetical protein B14911_07438 [Bacillus sp. NRRL B-14911]
          Length = 375

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 116/326 (35%), Gaps = 20/326 (6%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P +    I F   P+ +  + K         +I+ + +   F      L    + E+   
Sbjct: 35  PFIIGFAIAFLMNPLVNFLVRKGRMPRALAVLISLILIFAFF----AGLITLLIAEIVSG 90

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
              +     + +      ++         L+ +  S   SL    +  +  N  +   RF
Sbjct: 91  ADYLAQVVPNHLETLITYAEDFFAGQLIPLYNQLTSMFNSLDTGQKDTILANIQNVGSRF 150

Query: 153 ASRFGMIFLDYCLSI--------------IFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
            +  G     +   I              IF ++A FF  +D + +S   + L      A
Sbjct: 151 GATAGSFIQSFFEKIPNILSWFPNAATVVIFSLLATFFISKDWYRLSILGNRLLPEKAKA 210

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GG 257
               +   + K +         +     +++     +  V   + + ++T I+ +IP  G
Sbjct: 211 SSATVFTDLKKALFGFVKAQATLVSITAIIILIGLLILRVDYAITIALVTGIVDIIPYLG 270

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
             + F    IY  I G +  A  L +   I L +  + + P ++   I +  L T   L 
Sbjct: 271 TGLIFVPWIIYEAIAGEMSTAVGLGVLYVIVL-VQRQIMEPKVLSSSIGMDPLATLVALF 329

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWK 343
            G +T+G LGL  GPV++ +I  + K
Sbjct: 330 VGFKTIGFLGLIAGPVVLVIITTLHK 355


>gi|323479884|gb|ADX79323.1| conserved hypothetical protein [Enterococcus faecalis 62]
          Length = 381

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 54/334 (16%), Positives = 113/334 (33%), Gaps = 7/334 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F    FAPVL A  + +   P+ +  + K +    +  ++  + ++   ++ LL +    
Sbjct: 40  FFSTLFAPVLVAGFLYYLLNPVVN-LLMKTKMKRIYAVLLVFLLLIIALVLILLTIIPKL 98

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++  L S +    +        ++++P            L+       +S   +    
Sbjct: 99  ADQLASLASSMPDFFKQVETWIYEIAELPIFKQID------LTSYIEKMDISYANIIQQF 152

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +               + ++     LF+  +DG  +   +              +  
Sbjct: 153 LSSLSSSLGSIVSTVASTTIVLVTAPFILFYMLKDGDKLVPAIQRFLPEKRKDDIVDLLG 212

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + + + S   G  I  +  G      Y L GV      GVI     +IP   P    A 
Sbjct: 213 QLNQTLSSYISGQAIECLFVGTFTIIGYSLLGVRYAFLFGVIAGFTNLIPYLGPYLGLAP 272

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + I      A    L   +   +    + P ++G  +K+  L     L+      GL
Sbjct: 273 AVLVTIFNEPVKAALCCLVVLVVQQLDGNIIYPNVIGKSLKIHPLTIILILLVAGNLAGL 332

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           LG+F+G    A+   I    I  +K  + +  +N
Sbjct: 333 LGIFLGVPFYAICRTIIYYVIDMVKAGRSEKVTN 366


>gi|312130597|ref|YP_003997937.1| hypothetical protein Lbys_1882 [Leadbetterella byssophila DSM
           17132]
 gi|311907143|gb|ADQ17584.1| protein of unknown function UPF0118 [Leadbetterella byssophila DSM
           17132]
          Length = 397

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 48/332 (14%), Positives = 117/332 (35%), Gaps = 22/332 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           ++++   L  L+    P+  AL+I     P+ +  +  +        V++    + L IV
Sbjct: 33  LYLVCQILVVLEDVLVPLAFALLISILLNPVVNKLVKWRFHR-----VLSIGIALLLAIV 87

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
               L  +  ++       +    Q                         +     L  +
Sbjct: 88  LFGSLIAFLSVQFSSFSDLIPQLEQRV-------------EVIWGDLQNWVRSNFGLSTI 134

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +  +   G+D          M  + +  +++ + I +F               + ++  
Sbjct: 135 EQKDIVEEGLDKGKSVVGDTLMSLMSFVSTLVLLPIYIFLILYYKPMFINFFYEVFDYKH 194

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                ++       ++S   G+ I     G++   A  L GVP  V LGV+ A++ +IP 
Sbjct: 195 SQRVSEVLSETKSAVQSYIQGLMIETCIVGVLNSVALLLLGVPYAVLLGVVGALLNLIPY 254

Query: 257 GAPISFTAVSIYLLIKG----NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
              +   A+ + L +      +      +    ++  FI +  + P +V   +++  L +
Sbjct: 255 VGGLVAIALPVLLSLVTEDGLSYTTPLLIVASYSVIQFIDNNIIVPRVVSSKVEVNALIS 314

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              ++ G    G+ G+F+    +A++ +I+  
Sbjct: 315 IIVVLLGGSLWGMAGMFLSIPFVAILKIIFDR 346


>gi|308177604|ref|YP_003917010.1| hypothetical protein AARI_18230 [Arthrobacter arilaitensis Re117]
 gi|307745067|emb|CBT76039.1| conserved hypothetical membrane protein [Arthrobacter arilaitensis
           Re117]
          Length = 429

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 62/353 (17%), Positives = 122/353 (34%), Gaps = 15/353 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  + + Q ++   +   +++ +  L     P L A+II    WP+          S   
Sbjct: 51  RLGIRSAQLLIVGALATFLIIGMLRLTMIVIPTLLAVIISCALWPLVIKLRRVV--SPML 108

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA-NQHGIPVPRWLSDIPGGMWAS 120
            A I  +  + +       L +  + E  +LV + V   NQ    V  ++  +P  +  S
Sbjct: 109 AAWIVFLGSLLILGGIGTGLVFSVIKEWPKLVDQAVQGFNQLNEMVQGFIGTMPFNVDQS 168

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +           +  + ET             A         +   +I +++ LFFF +D
Sbjct: 169 Q-----------IDNVVETVTGFLTSSQFGTGALNTLSAAGSFVTGMILLLVILFFFLKD 217

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  I     S     +   W        +       G   +A  + L + +   +  VP 
Sbjct: 218 GDKIWAFAVSWTPRHYRNKWILSGDRALRTFGGYIRGTATVAAVDALGITATLLIVQVPL 277

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            + LGVI  + + +P  GA ++    ++  L+      A  +     +   +    L+P 
Sbjct: 278 AIPLGVIVFLGSFVPMVGATVAGILATLIALVTNGPVVALIVLAAVILVNQLEGNFLQPV 337

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           ++   + L  L     L  G    G++G  +   L+A    + K      K +
Sbjct: 338 VMANALSLHALVVLMALTAGTVLAGIVGAVLSVPLVAASWAVIKVWTGRDKSD 390


>gi|288905208|ref|YP_003430430.1| membrane protein [Streptococcus gallolyticus UCN34]
 gi|325978183|ref|YP_004287899.1| membrane protein [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
 gi|288731934|emb|CBI13499.1| Putative conserved membrane protein [Streptococcus gallolyticus
           UCN34]
 gi|325178111|emb|CBZ48155.1| membrane protein [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
          Length = 372

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 123/331 (37%), Gaps = 12/331 (3%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV---IATVSVMCLFIVPLLFLFYYG 85
            F      A I+      +Y    ++  ++   L     I+ +     FI+ + +LF   
Sbjct: 41  PFLIGAGIAYIVNIVMS-LYEMLYTRVIKNRVLLKAKRAISMILAYLTFILLISWLFSIV 99

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++   ++ ++  +  GI    ++ ++       EL+  +  +   +      + +   
Sbjct: 100 LPDLISSINSLLKIDTTGIA--NFIKEVSDNKAIKELF-DYFGNSSDITSTLSDYSQQIL 156

Query: 146 IDFIPRFASRFGMI--FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
              +         +       L++   ++   +       + +Q + L +     Y +K+
Sbjct: 157 NQVLSVLTGVLTSVSTIASTVLNVFVSLVFSIYVLASKEQLGRQFNLLIDTYLGKYAEKV 216

Query: 204 ---SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
                I+ +     F+G T+ A+  G +  +  +L   P    +G++ A  A+IP     
Sbjct: 217 HYVLDILHQRFHGFFVGQTLEAMILGSLTAAGMFLFSFPYAATIGILVAFTALIPVIGAY 276

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
               +   L+   ++  A    ++  +        + P +VGG I LP +     +  G 
Sbjct: 277 IGATIGFILIATQSVSQAFLFLIYLIVLQQFEGNVIYPRVVGGSIGLPGMWVLMAITIGG 336

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
              G+LG+ +   L A +  I K+++   ++
Sbjct: 337 ALWGILGMLVAVPLAASLYQIIKDNVAKRQQ 367


>gi|257867397|ref|ZP_05647050.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257801453|gb|EEV30383.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
          Length = 418

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 55/341 (16%), Positives = 113/341 (33%), Gaps = 7/341 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+       L     P L  LI+ +   P+     +KK   S  +A I  + ++ +  
Sbjct: 64  ISFLFTPFSAILTAIIPPFLFGLILYYLFNPVVDKLETKKIPRSASIAGIYLLILLLIVF 123

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
                           + S   L +        +L + P     +++     +   ++  
Sbjct: 124 AGFQLYPILEQQTTDLINSLPSLVSDFEKNATAFLENTPFQDEMAQITDTLQNITSNIMS 183

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
               + +T          S          +++    I  FF  R+       + SL    
Sbjct: 184 FIGDYWQTGAAGL-----SSLFSTISTLFIALFTGPIIAFFLLRNPNKFYFSVLSLVPPR 238

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + +I +I    + +   G  I ++  G +    + L G+     L +   ++ +IP
Sbjct: 239 FRKDFNEIVKISDLQVGAFLKGQIISSLILGAIYWVVFLLIGLEYASILAIAAGLLCIIP 298

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G  I F                  L  W A++L   D  + P ++G  +K+  +    
Sbjct: 299 YIGPFIVFFPGLFIAAQDSTGMLVKFLIAWFAVQLLHGDLVV-PRVMGDRLKIHPITILV 357

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            L+     MG++G+  G  +  L+ V+        K+   +
Sbjct: 358 VLLVMGDLMGIVGVIFGIPIYCLLKVLVVYVFRKFKQRYNR 398


>gi|225350939|ref|ZP_03741962.1| hypothetical protein BIFPSEUDO_02514 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158395|gb|EEG71637.1| hypothetical protein BIFPSEUDO_02514 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 512

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/358 (12%), Positives = 119/358 (33%), Gaps = 23/358 (6%)

Query: 3   ETMLNPQGIMRWMI-MFIILVSLYF-------LKGFFAPVLSALIIGFTSWPIYSSFISK 54
           +    P+ + R ++ + I +V   F       ++     ++ +L I     P+    +  
Sbjct: 35  DPRKPPEWLGRALLYIAIAIVGFTFCWRSWGKIEYLVIDIIVSLFIALAVEPVVVPLVKH 94

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
                +F ++ + + +  +  V         + +M  LV+ +    +             
Sbjct: 95  -GWKRSFASLFSLLMLAVMLGVLFTLFGNLFVQQMIALVNGLPDLYEQMCQ--------- 144

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
              +AS+     L    +L       ++T+ +      A         + ++++ +I+  
Sbjct: 145 ---FASQYANFQLPEINNLGNEILKNIQTSWVTDFAGTALNTVSGLFSFLINLMTIIMTT 201

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           ++    G  + +             +  +  +    I S      I+A+      G    
Sbjct: 202 YYISAAGPKLRRAACQWMAPAAQRRFLFVWTVSQSQISSFLFSRAILALLNAFFTGICLM 261

Query: 235 LAGVPSHVALGVITAIMA-MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           L  VP  + L +   +++  IP  G  I      ++      ++ A  + ++  +   I 
Sbjct: 262 LLHVPYWLPLALFCGVVSQFIPMLGTYIGGALPVLFAWGSCGLWQAVAVLVFICVYQQIE 321

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +    P +    + +     F  ++      G LG F+   ++A +  I++      +
Sbjct: 322 NLIFAPKISQRTMDVNDAVAFLAVLAFTSLFGALGAFLALPVVASVQTIFRTYTKRYE 379


>gi|269968742|ref|ZP_06182734.1| permease PerM, putative [Vibrio alginolyticus 40B]
 gi|269826636|gb|EEZ80978.1| permease PerM, putative [Vibrio alginolyticus 40B]
          Length = 357

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 53/350 (15%), Positives = 114/350 (32%), Gaps = 14/350 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +    I+    +++YF     AP+L A+++ +   WP+      +     T   +I
Sbjct: 15  DPHAVSLVAILLFGFITIYFFGHLIAPLLVAIVLAYLLEWPVVKMC--RMGVPRTLSVII 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + L ++ L  L      ++  L++ +             L      +        
Sbjct: 73  VILVFVGLMLIALFGLVPTIWTQVGNLINDIPNMYNG-------LQKFIVTLPERHPELA 125

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +L   +++   ++      G   +    +    I     + +I + + +FF  +D   + 
Sbjct: 126 NLEIVETVVTNAKNQALGLGESVVKGSLASLVSIAT-LAVYLILVPLLIFFLLKDKEEML 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +          K+   + + I +   G  +  +  G V    + L  +     L 
Sbjct: 185 RIASGILPK-NRKLANKVWHEMNEQISNYIRGKVLEILIVGGVSYVTFALLDLRYSALLA 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V   +  +IP  GA      V+I  L   G       L L   I   +    L P L   
Sbjct: 244 VAVGLSVLIPYIGAAAVTVPVAIVGLFQWGLTPPFYWLLLAYGIIQALDGNVLVPVLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            + L  +     ++      G  G+F    L  L+  +W       +   
Sbjct: 304 AVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWHALPSTEENEP 353


>gi|326799548|ref|YP_004317367.1| hypothetical protein Sph21_2142 [Sphingobacterium sp. 21]
 gi|326550312|gb|ADZ78697.1| protein of unknown function UPF0118 [Sphingobacterium sp. 21]
          Length = 358

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/333 (13%), Positives = 118/333 (35%), Gaps = 15/333 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           + + + + + +  LY  K F  P+  A ++      I      +   +    ++I  + +
Sbjct: 8   VNKLLFLVLGIAILYVGKPFLIPITLAGVLATLFVGIAKKLEDR-GLNRALSSLIGVLLI 66

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +  F   +  L +      + L             +  W++   G               
Sbjct: 67  VLAFATIIALLVWRLSDFSENLAGMQERVLALFEKLKTWINQTLG------------ISS 114

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                L +   ++ G          F    +   +  + +++  F F      +   +  
Sbjct: 115 DQQAALVDKAEQSIGSSGGSGTILSFAGGTMSILVDSLLVLVYTFLFLLYRSRLKNFILK 174

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L ++      +KI      V ++   G+ ++ +   ++ G  + + GV + +   ++  +
Sbjct: 175 LVDNTKKNQTEKIINKSADVSKNYLAGLALMIVMLWILYGIGFSVVGVKNALFFAILCGV 234

Query: 251 MAMIPGGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           + ++P    I+ T++++   +   G       + +   +  F+    L P +VG  + + 
Sbjct: 235 LEIVPFVGNITGTSLTVLATVAQGGGNDKIIGVLIVYLVVQFVQTYILEPLVVGDQVNIN 294

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L T   LV G    G+ G+ +   L+ +I +I
Sbjct: 295 PLFTIIALVLGELIWGIGGMVLAIPLLGIIKII 327


>gi|152971346|ref|YP_001336455.1| putative permease [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238895941|ref|YP_002920677.1| putative permease [Klebsiella pneumoniae NTUH-K2044]
 gi|262042100|ref|ZP_06015276.1| PerM family permease [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|330007358|ref|ZP_08305946.1| hypothetical protein HMPREF9538_03635 [Klebsiella sp. MS 92-3]
 gi|150956195|gb|ABR78225.1| putative permease [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238548259|dbj|BAH64610.1| putative permease [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259040581|gb|EEW41676.1| PerM family permease [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|328535475|gb|EGF61941.1| hypothetical protein HMPREF9538_03635 [Klebsiella sp. MS 92-3]
          Length = 353

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 54/347 (15%), Positives = 122/347 (35%), Gaps = 14/347 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +P+ I   +I+      ++F  G  AP+L A+++ +   WP     + +   S T
Sbjct: 10  RRRFSDPEAIALLVILLAGFGIMFFFSGLLAPLLVAIVLAYLLEWPTVR--LERIGLSRT 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +     ++ ++    + LL  F    +  ++ +  +         +  + + +P    A 
Sbjct: 68  WA---TSLVLILFVGILLLLAFVVLPVAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPAL 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                  +  ++++    T       D + +++    +  L   + ++ + + +FF  +D
Sbjct: 125 MDAGIIDAMAENMRTRMLTV-----GDSVVKYSLASLVGLLTLAVYLVLVPLMVFFLLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +          ++ + + + I +   G  +  I   +     + L G+  
Sbjct: 180 KEQMLNAVRRVLPRNRGLAG-QVWKEMNQQITNYIRGKVLEMIVVSVATWIGFILFGLNY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V+     +IP  GA +    V  + L   G       LF    I   +    L P
Sbjct: 239 SLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSLFAVYLIIQGLDGNLLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L    + L  L     +V      G  G+F    L  LI  +    
Sbjct: 299 VLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVHAW 345


>gi|113461146|ref|YP_719214.1| permease [Haemophilus somnus 129PT]
 gi|170717731|ref|YP_001784801.1| hypothetical protein HSM_1481 [Haemophilus somnus 2336]
 gi|112823189|gb|ABI25278.1| permease [Haemophilus somnus 129PT]
 gi|168825860|gb|ACA31231.1| protein of unknown function UPF0118 [Haemophilus somnus 2336]
          Length = 350

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 53/341 (15%), Positives = 112/341 (32%), Gaps = 11/341 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           +PQ +  + I+F   V++YF     AP+L A+++ +           K +        + 
Sbjct: 15  DPQAMALFAILFFGFVAIYFFNSLLAPLLIAIVLAYLLEYPVRLLHEKLKLPRILATSLI 74

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
               + +  V    L      +  +LVS +         +  WL  +P        +   
Sbjct: 75  LGGFIAITFVMTFILIPVLWAQTIKLVSDLPHMFN---QLNEWLLSLPENYPELVDYQMI 131

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            +   S K       ++     I    +   +    + + ++      FF  +D   +  
Sbjct: 132 DAFFISFKNKILGLGESALKLSIASLLNLVTLGIYAFLVPLMV-----FFLLKDKTELIN 186

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            + +           K+ R + + I +   G  +  +   LV  + +   G+   + L V
Sbjct: 187 YITNFLPK-NRTLASKVWREMQQQIANYIRGKLLEILIIALVSYAIFLFFGLNYSLLLAV 245

Query: 247 ITAIMAMIP-GGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
              +  ++P  GA +    V++  +   G       L +   I   +    L PFL    
Sbjct: 246 AVGLSVLVPYIGAVLVTIPVALVAMFQFGATPTFWYLMVAYVISQILDGNLLVPFLFSEA 305

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           + L  L     ++      G  G+F    L  L+  +    
Sbjct: 306 VNLHPLTIIIAVLIFGGLWGFWGIFFAIPLATLVKAVVSSW 346


>gi|269926342|ref|YP_003322965.1| protein of unknown function UPF0118 [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269790002|gb|ACZ42143.1| protein of unknown function UPF0118 [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 354

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 51/360 (14%), Positives = 122/360 (33%), Gaps = 19/360 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           M   Q  +  +++ + L   Y    L       + A+I      P  +    K     + 
Sbjct: 1   MSAKQVFINTLVVLLTLAGAYLVIRLLDIIVLFVIAIIFASAISPAVAFLNRKLPLGISI 60

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  + ++ +F   L  +    + +   LV       + G  + R +          E
Sbjct: 61  A--IVYLGIILVFAGILSLIIPTAVRQGMALV-------ESGPDMVRAVER-----QIIE 106

Query: 122 LWTKHLSHPQSLKILSETFLK--TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           L  +     ++L    + + +   +    +        + F+    + + +++  F++  
Sbjct: 107 LQQRFNIPVENLSGDLQEYYRRLISSAPRLAAGILNVTLSFISGLGAFVAILVMAFYWLL 166

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           +   +      L         + I   +   I +   G   + +  G+       + G+ 
Sbjct: 167 ERRGVQSTWVGLASPSSRPEIRHIIDEIEAKIGAYARGQITLGLIVGIASFIGLTILGIN 226

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               L +I  I  +IP   PI     ++ + +  +   A  + L   I   + +  L P 
Sbjct: 227 YAAILALIAGISELIPIVGPIVGAIPAVLIALSQSPKQAILVVLLYVIIQQMENHLLVPK 286

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           ++   + L  L   F ++ G   MG++G+ +   + + I VI   +++  +E       N
Sbjct: 287 IMQRSVGLSPLTVLFVVLAGGSLMGIIGVLLAVPVASAIQVILSHTLLRREETDTLYREN 346


>gi|17227738|ref|NP_484286.1| hypothetical protein alr0242 [Nostoc sp. PCC 7120]
 gi|17135220|dbj|BAB77766.1| alr0242 [Nostoc sp. PCC 7120]
          Length = 345

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 53/349 (15%), Positives = 127/349 (36%), Gaps = 21/349 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVL----SALIIGFTSWPIYSSFISKKEESSTF 61
           LN   ++R++++     ++  L  +F  V+     A I+ F                 + 
Sbjct: 13  LNNLALVRFLLLVAAGWAIVQLLAYFETVIIIFTFAAILAFLLSYPVQWLRRFLPH--SV 70

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             V+  +  + +    L+ +    + + ++L+  +       +P    +  +        
Sbjct: 71  AVVVVFLISIVILGGLLITVGVALLSQGQQLIDSISAFLTSLLPFLERIERLLSNRNL-- 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                    Q    + +  L+T  +  +    +       ++ ++ I + +  FF   DG
Sbjct: 129 ---------QIDLSVIQEQLRTQAVSTLVTSLAIVQQFLTNF-VTFILIAVVAFFMLLDG 178

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          + + I+ +     F G  ++ +         + L  VP  
Sbjct: 179 EKLWNFILKIVPQ---KRRIRFTNIMRRSFLGFFRGQLLLCLFLTSSTFIIFLLLQVPFA 235

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           + L VI  I+ +IPG            +++  +++ A  +     +   I D  + P ++
Sbjct: 236 LILSVIVGILDIIPGIGATLGVGTITLIVLSQDVWLALKVLAACVVLQQIQDNLISPRIM 295

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            G + L  +  FF L+ G R  GLLG+FI   +  +I  +++   M  +
Sbjct: 296 QGSLNLNPVVVFFALLVGARVAGLLGVFISIPITGVIVSLFEIDEMKSE 344


>gi|302877845|ref|YP_003846409.1| hypothetical protein Galf_0603 [Gallionella capsiferriformans ES-2]
 gi|302580634|gb|ADL54645.1| protein of unknown function UPF0118 [Gallionella capsiferriformans
           ES-2]
          Length = 352

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 62/346 (17%), Positives = 135/346 (39%), Gaps = 9/346 (2%)

Query: 11  IMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++W++  +  L+ LY+L     P ++A I+ +   P+    +  K       A +  V 
Sbjct: 8   ALQWLLFVVPALLLLYWLSPILTPFVAAAILAYICNPLVRRLVVLKLPR---AAAVVMVM 64

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V  + +   L L    +LE +  +  V L +   +     L  +     A   W   L  
Sbjct: 65  VFLMLLFAGLLLIMLPLLEKEISLFMVRLPDLIEMLRASLLPKLQLLFGAELQWDSTLLK 124

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              L             + +  + S  G   L+  ++++ + +A+F+F RDG  +S + D
Sbjct: 125 NWLLSHWQSA---GGVAEKLLPWLSSSGGKILNVAMNLLLIPVAMFYFLRDGGLMSAKFD 181

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +L    + A   +IS  V +V+     G   + +          W  G+   + +G++  
Sbjct: 182 ALIPRHWHAKVCEISAEVDRVLAEFLRGQISVMLLMSAFYSLVLWAVGLEFALPIGIVAG 241

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--DKTLRPFLVGGPIKL 307
           ++  IP    +    ++    +      ++ +++WG      +     + P+LVG  I L
Sbjct: 242 MLVFIPYLGMVIGLLLATLAAVMQFSELSSVVWVWGVFGAGQMLEGTLVTPWLVGERIGL 301

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             L   F L+   +  G  G+ +   + A++ V  +   +    ++
Sbjct: 302 HPLAVIFALLAFGQLFGFFGVLLALPMSAILLVGLRHGTIWYLSSR 347


>gi|150389949|ref|YP_001319998.1| hypothetical protein Amet_2180 [Alkaliphilus metalliredigens QYMF]
 gi|149949811|gb|ABR48339.1| protein of unknown function UPF0118 [Alkaliphilus metalliredigens
           QYMF]
          Length = 359

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/307 (14%), Positives = 115/307 (37%), Gaps = 6/307 (1%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           +   +  F PV+ +  + +   P+      K   S     ++  V ++ + I   + +  
Sbjct: 33  IVIFQTLFIPVILSGFLFYLLRPLRDVINKKL--SKGVSILLLYVFLIFIMISLFIIIGP 90

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
               +++ L   + +       + R + +I             + + +         L  
Sbjct: 91  ILQRQLQSLTDNMPVIISE---IQRSVINIQESGIFQGNQLSEMLNVEEFIFQLGDLLNE 147

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
            G +     AS  G +  +  L +I +   LF+  RDG    + + ++         + I
Sbjct: 148 LGKNIASNVASFIG-VLANAVLVLIIVPFILFYMLRDGERFGKSILNIFNEKQRGEVEDI 206

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
            + +   + S   G  I+ +  G++    + + G+   + L VI  +  +IP   P   T
Sbjct: 207 LKEIDTTLSSYIQGQGIVCLCVGILCYITFLIVGLDYALLLAVIAGVTNIIPYFGPWIGT 266

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++ + +  +   A  + +   +   I    + P ++G  +K+  +   F ++   R +
Sbjct: 267 FPAVIVALFQSPMMALLIVVTVVVIQQIESNLIAPQVIGKKLKMHPITIMFLILVAGRLI 326

Query: 324 GLLGLFI 330
           GL+G+ +
Sbjct: 327 GLIGMIL 333


>gi|197121536|ref|YP_002133487.1| hypothetical protein AnaeK_1125 [Anaeromyxobacter sp. K]
 gi|196171385|gb|ACG72358.1| protein of unknown function UPF0118 [Anaeromyxobacter sp. K]
          Length = 359

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/343 (13%), Positives = 115/343 (33%), Gaps = 19/343 (5%)

Query: 9   QGIMRWMIMFIILVS---LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +   R + +  +      L+  +    P      +  +  P+ ++   +   S T  A+ 
Sbjct: 16  RATARALTLLAVAAGFGFLWLARDLLVPTALGATLALSVHPVVAALERR-GLSRTLAAIA 74

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T+  + +    L  + +     +     ++             +        A+ L  +
Sbjct: 75  GTLLTVAV----LAAIGWVLWDRIAAFAQELPGYEGRLREAAAGIRR-----HAAHLQAQ 125

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                Q+ +   E  ++                  L        ++  L+F   +G    
Sbjct: 126 SEQLVQAPRRPGEVKVQETVPW--GTLLVGTAQGALTLAGQATVVVFVLYFTLAEGPRFR 183

Query: 186 QQLDSLGEHLFPAYWKKISRI--VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
            +L +  +       + ++ +  + + +    L    +    G+V  + Y L G+     
Sbjct: 184 VKLLAWADRRPRGRARLLAALEELHRDVEQYMLNRVALNAILGVVTWAVYALYGLEHAAI 243

Query: 244 LGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            G+ TA++  IP  G A   F   ++ LL  G   +   +     + + +    + P  +
Sbjct: 244 WGITTALLHFIPYVGPALGLFLPTAMALLQYGTAKDVALVAAIYLVLVNVQGNVVDPLFL 303

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           G  ++L  L  F G +      G +GLF+   L++ + ++ + 
Sbjct: 304 GKQLRLSPLVVFLGSLFWFWLWGPVGLFLAVPLLSTVRIVCRH 346


>gi|262192246|ref|ZP_06050403.1| permease PerM [Vibrio cholerae CT 5369-93]
 gi|262031856|gb|EEY50437.1| permease PerM [Vibrio cholerae CT 5369-93]
          Length = 354

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 56/349 (16%), Positives = 121/349 (34%), Gaps = 14/349 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P       I+    +++YF     AP+L A+++ +   WP+    + +     T   +I
Sbjct: 15  DPHAASLVAILLFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQ--LRRLRIPRTLAVII 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
                  L I+ +  L      ++  L++ V           ++++ +P           
Sbjct: 73  VITVFTGLMILAVFGLVPTIWKQVGNLINDVPNMYNGTQ---KFITSLPE----RYPELA 125

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           HL   +S+   ++  +   G   +    +   +      + +I + + +FF  +D   + 
Sbjct: 126 HLEIVESVISNAKNKVLGMGESVVKGSLASL-ISLATLAVYLILVPLLVFFLLKDKQEML 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +          K+   + + I +   G  +  +  G V    + +  +   V L 
Sbjct: 185 RMASGILPR-NRKLANKVWEEMNQQISNYIRGKVLEIVIVGTVSYITFAILDLRYAVLLA 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V   +  +IP  GA      V+I  L + G       L +   I   +    L P L   
Sbjct: 244 VAVGLSVLIPYIGAAAVTVPVAIVALFQWGLTPQFYTLLIAYGIIQALDGNVLVPVLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            + L  +     ++      G  G+F    L  L+  +WK      +E 
Sbjct: 304 AVNLHPVAIIIAVLVFGGLWGFWGVFFAIPLATLVKAVWKALPSIDEEP 352


>gi|254390206|ref|ZP_05005425.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
 gi|197703912|gb|EDY49724.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
          Length = 469

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/308 (14%), Positives = 104/308 (33%), Gaps = 21/308 (6%)

Query: 17  MFIILVSLYFLKGFFAPV-------LSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           + ++  +L+ L    + V        SAL+I     P  +  + +          +  ++
Sbjct: 131 LLVLAGTLWVLMRVISAVQLVVLAFASALLITALLQPTVARLL-RIGLPRGLATAVTAIA 189

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              +  +   F+ +  M  +  L  +V    Q    +  W  + P  +   ++     + 
Sbjct: 190 GFAVMALVGWFVVWQVMENLDTLSDRVREGIQE---LRLWALEGPFHVSEGQINDLADNL 246

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             ++   +E          I     +     +++    +  + +  F   DG  I Q   
Sbjct: 247 SDTIGSNTEE---------ITSAGLQGVTALMEFLAGALLAMFSTLFLLHDGPRIWQWTL 297

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L                   + +   G  ++A+ + + +G   W   VP  V L V   
Sbjct: 298 KLVPAQARPGVASAGPRAWATLTAYVRGTVLVALIDAIFIGLGIWFLDVPMAVPLAVFVF 357

Query: 250 IMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           + A +P  GA +S     +  L+   +F A  + +       I    L+PF++G  +++ 
Sbjct: 358 LFAFVPLVGAVLSGALAVVVALVTQGVFTALMVLIVVLAVQQIEGHVLQPFILGRAVRVH 417

Query: 309 FLPTFFGL 316
            L     +
Sbjct: 418 PLAVVLSV 425


>gi|256390449|ref|YP_003112013.1| hypothetical protein Caci_1247 [Catenulispora acidiphila DSM 44928]
 gi|256356675|gb|ACU70172.1| protein of unknown function UPF0118 [Catenulispora acidiphila DSM
           44928]
          Length = 388

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/330 (12%), Positives = 102/330 (30%), Gaps = 16/330 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
              +  AL++     P      ++      +   I  ++ + LF   ++ +      +  
Sbjct: 58  IVMITMALVLAAGLNPFVEMLTAR-GFHRRWAVTIVALAALGLFAGFIVVIAKPLTDQTS 116

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            LV   V      +     +  +              +               +    + 
Sbjct: 117 SLVHNGVPDGLKKLQENSTIQRLDKKYHLITKLQNWFT-------------TADTTKTLA 163

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
             A  FG   L        +++   +F     +++     L           ++  V   
Sbjct: 164 GGAFGFGKAVLTSVFKAFTILMLTLYFLGSLPAMTSGGLKLVPRSRRERAADLTDRVLNR 223

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
           I     G  +++    L    A  L GV   + L ++  +  +IP  GA          +
Sbjct: 224 IGGYVSGALVVSTCATLASWLAMSLIGVRFALPLALLVGLTDLIPIIGATFGAFIACTVI 283

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG-L 328
           L+  + F A    ++  +   + +  + P ++   + LP        + G   +G+ G L
Sbjct: 284 LLLDSPFKALAALIFFVLYQQLENYLIYPRVMSRTVDLPPAVAVIAALAGYAILGVSGAL 343

Query: 329 FIGPVLMALIAVIWKESIMAIKENKEKISS 358
              P+   L+ ++ +  + A   + E  ++
Sbjct: 344 LFIPLTAGLLVIVRQIVLPAQDRDPEAPTT 373


>gi|300914210|ref|ZP_07131526.1| protein of unknown function UPF0118 [Thermoanaerobacter sp. X561]
 gi|300889145|gb|EFK84291.1| protein of unknown function UPF0118 [Thermoanaerobacter sp. X561]
          Length = 358

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 52/352 (14%), Positives = 127/352 (36%), Gaps = 20/352 (5%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFF----------APVLSALIIGFTSWPIYSSFISKKE 56
           +   I +  ++F+I+ +   L  F           +P   + +I +   P+      K  
Sbjct: 16  DKMQIKKTYLLFLIIGATGLLYFFIKNWVSIKNILSPFFVSALIAYLLNPM-----VKFF 70

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
            S  F   ++ + V  +    +LF  +Y +     L+++ +   Q        +  +   
Sbjct: 71  NSKGFSISLSILLVFLIVASGILFFSFYIV---PLLINEFIALLQMIPFYAEEIQKLLIQ 127

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
           +  + L   +L       +        N   +    A +  +  L   + II + I  F+
Sbjct: 128 LKFNYL--SYLPPQVEKVLDKNLGSLNNAFTYHIDSAFKSVITILKDAVDIIIIPIVTFY 185

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
           F +D     ++++ +    +   +  I + + K++         I+    +       L 
Sbjct: 186 FLKDKKVFKEEIERILPQKYSTKFFNILKKIDKILSKYLRAQIYISTFVAIFTMIGLSLI 245

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
            V     +GV+  I+ +IP   PI     ++ + +  ++       +   +   + +  +
Sbjct: 246 KVKYAFLIGVLAGILNIIPYVGPILSIIPTVLIGLLDSLTKGFWALIICLLVQQVENAFI 305

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            P ++   + L  +   F L+ G    G+ GL +   ++A+I  I  E  + 
Sbjct: 306 TPKIMSDSVGLHPVTVIFSLIAGGELFGIWGLLLSVPIVAMIKAIVIEIFIE 357


>gi|297192363|ref|ZP_06909761.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197723035|gb|EDY66943.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 457

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/319 (14%), Positives = 112/319 (35%), Gaps = 21/319 (6%)

Query: 17  MFIILVSLYFLKGFFAPV-------LSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           + ++  +L+ L    + V       ++AL++     P  +    +          +  + 
Sbjct: 89  LLVLAGTLWVLMRVISAVQLVVLAFVAALLVTAMLQPTVARLC-RLGLPRGLATAVTAIL 147

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              +  +   F+ +  M  +  L  +V         + RWL D P  +  S++     + 
Sbjct: 148 GFVIMGLVGWFVVWQVMDNLDNLSDRVRDGIDE---LKRWLLDSPFHVTESQINDIAQNL 204

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             ++   +E          I     +   + ++    I+  + +  F   DG  +   + 
Sbjct: 205 SDTIGTNTEE---------ITSAGLQGVSVMVEVLTGILLAMFSTLFLLYDGKRVWLWVL 255

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L                 + + +   G  ++A+ + + +G   +   VP  V L V   
Sbjct: 256 KLVPAQARPGVAGAGPRAWRTLTAYVRGTVVVALIDAIFIGLGIYFLDVPLAVPLAVFIF 315

Query: 250 IMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           + A IP    +   A+++ + L+   +F A  + +       I    L+PF++G  +++ 
Sbjct: 316 LFAFIPLVGAVVSGALAVVVGLVTQGVFTALMVLVVVLAVQQIEGHVLQPFILGRAVRVH 375

Query: 309 FLPTFFGLVGGVRTMGLLG 327
            L     +  G    G+ G
Sbjct: 376 PLAVVLAVASGGLVAGIGG 394


>gi|229543742|ref|ZP_04432802.1| protein of unknown function UPF0118 [Bacillus coagulans 36D1]
 gi|229328162|gb|EEN93837.1| protein of unknown function UPF0118 [Bacillus coagulans 36D1]
          Length = 363

 Score = 83.7 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/308 (15%), Positives = 105/308 (34%), Gaps = 11/308 (3%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P+L    I +   P+                 +A + +  LF     +  Y G+  +   
Sbjct: 45  PLLIGGFIAYILHPLVEFLYKNGLPR-----GLAILIIYILFFGGTAYGVYRGLPLV--- 96

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
              +   N     +P++      G+   +   KH       +I          +      
Sbjct: 97  ---IAQMNDLSEHLPQFADQYRDGVVYLQTSMKHWPDGLQDQIDERIERFELWLSANVSN 153

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
           +    M  ++Y +++  +    F+  +D   + +   +L    +        R V + I 
Sbjct: 154 SINMLMQLVNYAIALAVIPFISFYLLKDFEHVKKAALALTPEKWRPSAAAFIRDVDRSIG 213

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
               G  +  +  G +   A+ + G+   + LG+I  +  +IP   P+        +   
Sbjct: 214 GYLRGQLLDCLLIGFLSFVAFAILGMKYPILLGIIIGVTNVIPYFGPVLGAIPVSVIAAT 273

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
            ++     + +   +  FI    L PF+VG  + L  L     L+ G    G+ GL +  
Sbjct: 274 ISLKFVLYVVIIVFVLQFIESNILSPFIVGKSLHLHPLFIIIALIAGEEIAGIAGLILAV 333

Query: 333 VLMALIAV 340
             +A++ V
Sbjct: 334 PALAVLKV 341


>gi|324328293|gb|ADY23553.1| membrane protein [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 355

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 50/311 (16%), Positives = 110/311 (35%), Gaps = 11/311 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L A  I +   P+      +            T++++ ++I+    + Y       
Sbjct: 43  ITPFLIACFIAYLLHPLIEKIHKEGMPR--------TLAILLIYILFFGGIGYGIYKGTP 94

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            ++ ++   N+      +       G+      T +       K+          I  + 
Sbjct: 95  VVIKQLQEINEQFPQFTKMYDSWMDGVTEQ---TANFPSFIHEKVKQIFVGVETKIQALL 151

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     LD  L I  +   +F+  +D          L    + +  + +++ + K 
Sbjct: 152 NKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQMLAKEIDKS 211

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G   + +  G V   ++W  G+   + LG+I  I  +IP   PI     ++ + 
Sbjct: 212 LGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGITDIIPYFGPILGAIPALMIA 271

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +        +  AI  F+    L P++VG  +++  +     L+ G    G++GL I
Sbjct: 272 ATVSTSLLIKAGITIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEVAGIVGLLI 331

Query: 331 GPVLMALIAVI 341
              ++A+I  +
Sbjct: 332 SVPILAVIRTV 342


>gi|326803671|ref|YP_004321489.1| putative ATP synthase F0, A subunit [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650153|gb|AEA00336.1| putative ATP synthase F0, A subunit [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 414

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 125/336 (37%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + F++    P++ A +  + S P+ + F+ K+  +S ++A I  + ++ + +
Sbjct: 59  IAFVFTPIIEFIQTIILPIIFAGVFYYLSSPLIN-FLRKRGLNSYWIAGIVLLVLVLIIL 117

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             + F+    + E K L+      +         + +I  G W          +  +  +
Sbjct: 118 WLISFI-PNLIDEAKHLIGN---WSNIWTQYQTEIENIIFGRWFERSQETLAEYLNNFNL 173

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
               F     ++           +     ++++   I LF+   DG        S     
Sbjct: 174 NQFNFNWRELMNTTLSSIGSVFGVITRVIIALVTAPIILFYLIADGEKFRDNFASFIPVK 233

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   + + I +   G   +AI   ++    Y + G+     L V+   + +IP
Sbjct: 234 IRNKTMRLLADMNQQISAYVRGQIFVAIAVAVMFAIGYAIIGLNYGTILAVVAGALNVIP 293

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     S+ + +  +      + +  AIE  I  + + P ++G  + +  +     
Sbjct: 294 YVGSFFGILPSLIVGLVQDPLMVIKVLIVFAIEQTIESRIISPLILGSNLNIHPITIMLL 353

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+ G    G++G+ I   + A++ VI+       +E
Sbjct: 354 LIAGGDLFGVVGIIIIIPVYAVLKVIFTYIFEWYRE 389


>gi|227486234|ref|ZP_03916550.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235865|gb|EEI85880.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
           51172]
          Length = 405

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 55/338 (16%), Positives = 113/338 (33%), Gaps = 8/338 (2%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFIS--KKEESSTFLAVIATVSVMCLFIVPLLFL 81
              ++ F      A II        S F    K  +    ++  + +    L I  L+ L
Sbjct: 39  YLVIQPFILGGALAFIISIPMNFFESEFAHFDKTGKHKKIISTCSLLLSWILVIASLVIL 98

Query: 82  FYYGMLEMKEL-VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS--LKILSE 138
               +  + ++  +  +        + R L   P     +  +           ++    
Sbjct: 99  INILVPSIVKVVYTFSIRWPDFVDEIYRLLKKYPITEPFANKFQNTFYGVGWYNVRNAVY 158

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF-YRDGFSI--SQQLDSLGEHL 195
           TFL+    D     AS  G I           + ++F   Y+    I   + L +L    
Sbjct: 159 TFLQGRKGDIFSTAASLMGSISSGVIGVFTMFVFSIFILIYKRMLKINGIRILYALMSEE 218

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
              Y  K+  +     +       I  I   ++     ++  +P+   + ++  +  +IP
Sbjct: 219 RADYINKVFSLSYNTFKDYLFSRVIAVICLSILTFVGMFVMRLPNAAMISIVVGLSDLIP 278

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI  TA S  L+   +   +     +  I   I +  + P + G  I LP +     
Sbjct: 279 IFGPIFGTAFSTILIFIESPVKSLIFLAYSLIIQQIQENVIYPAIAGNKIGLPAVWVMAS 338

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +  G    G+ G+ +   ++++I  +  E I  + E K
Sbjct: 339 VTIGGSLFGVWGMLVSIPVVSVIYTLSHEKIHHMLEEK 376


>gi|188990769|ref|YP_001902779.1| Putative permease (PerM) family protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732529|emb|CAP50723.1| Putative permease (PerM) family protein [Xanthomonas campestris pv.
           campestris]
          Length = 388

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 48/330 (14%), Positives = 124/330 (37%), Gaps = 12/330 (3%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           +L  +  L     P + AL++ +   P+          S      +  + ++ L ++ L+
Sbjct: 25  VLWVVSLLSPILTPFVLALLLAWLGDPLVDRIERA-GRSRNMAVTLVFILMVLLVVLALM 83

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            L      ++  L+  +       I      + IP     + +       P+ L     +
Sbjct: 84  ILVPMMERQIMTLIDALPQMRDWAIG-----TAIPWLERRTGVELMGWLDPERLIEWIRS 138

Query: 140 FLKTNGI--DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
             +  G        + SR G   + + +++  + I  F+F RD   + +++ ++    + 
Sbjct: 139 HWEQAGGVAKTFFGYVSRSGFAMVTWVINLALLPILAFYFLRDWDRMVERVAAVIPRAYI 198

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-- 255
               +++     V+     G  ++ +  G +  +   + G+   + +G+I   ++ IP  
Sbjct: 199 GTVSRLALESNDVLGGFIRGQFLVMLALGAIYATGLSIIGLNLGLLIGIIAGFISFIPYL 258

Query: 256 -GGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
                I    ++  +  +G ++     + +   +   +    L P +VG  I L  +   
Sbjct: 259 GATTGIVLALLAAIVQAQGFDLKLLIGVGVVFTVGQLLESYVLTPRIVGDKIGLHPVAVI 318

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           F ++ G +  G LG+ +   + A+  V+ +
Sbjct: 319 FAVMAGGQLFGFLGMLLALPVAAVANVLLR 348


>gi|138896299|ref|YP_001126752.1| hypothetical protein GTNG_2662 [Geobacillus thermodenitrificans
           NG80-2]
 gi|134267812|gb|ABO68007.1| Membrane protein, putative [Geobacillus thermodenitrificans NG80-2]
          Length = 320

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 48/307 (15%), Positives = 102/307 (33%), Gaps = 12/307 (3%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
              K +        +  + +       ++ L    +   + L   V    Q  I      
Sbjct: 1   MERKTKMPRWLAVSVTLIVLFAAVAGIVILLIAEIVSGTQYLADVVPEKFQALIAYMESF 60

Query: 111 SD---IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL-- 165
           +    IP     + L+     + Q   + +   + T     +  F  R            
Sbjct: 61  AANQLIPLYQDLAVLFKSLNDNQQDTIMQNIQAVGTQIATTVGEFIQRVLQNIPQLLAWL 120

Query: 166 -----SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
                  IF ++A FF  +D   + + +            K +   + + +         
Sbjct: 121 PNAATVFIFSLLATFFISKDWHRLMRMIQQWLPAKARTSGKTVFLDLKRALFGFIKAQAT 180

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNAT 279
           +     +++     +  V   + + +I   + ++P  G  I F    IY  + G+I  A 
Sbjct: 181 LISITTVIVLIGLLILRVDYAITIALIIGFVDILPYLGTGIVFVPWIIYAAVSGDIPFAI 240

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
            L +   I + +  + + P ++   I L  L T   L  G + +G LGL  GPV++ +I 
Sbjct: 241 GLGVLY-IVVLVQRQIMEPKVLSSSIGLDPLATLIALFVGFKLLGFLGLIAGPVILVIIR 299

Query: 340 VIWKESI 346
            +   ++
Sbjct: 300 TLHSANV 306


>gi|52081223|ref|YP_080014.1| hypothetical protein BL02034 [Bacillus licheniformis ATCC 14580]
 gi|52786604|ref|YP_092433.1| YrrI [Bacillus licheniformis ATCC 14580]
 gi|319644809|ref|ZP_07999042.1| YrrI protein [Bacillus sp. BT1B_CT2]
 gi|52004434|gb|AAU24376.1| conserved protein YrrI [Bacillus licheniformis ATCC 14580]
 gi|52349106|gb|AAU41740.1| YrrI [Bacillus licheniformis ATCC 14580]
 gi|317392618|gb|EFV73412.1| YrrI protein [Bacillus sp. BT1B_CT2]
          Length = 352

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 52/328 (15%), Positives = 117/328 (35%), Gaps = 17/328 (5%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            LK    P+  A+ I +   P+                   T+S++ ++ +    L Y  
Sbjct: 38  LLKSILIPLAIAVFITYLLLPVVEKIHRAGVPR--------TLSILLIYFLFFAGLGYAF 89

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN- 144
              +  L+ ++   ++    +     ++       +L       P  +    + F+    
Sbjct: 90  YKGVPILIKQLTELSEGIPVLAASYENM-----LDQLHHHTDGWPDGMHDRVDRFVNQTE 144

Query: 145 --GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                ++ R          DY L    +   +F+  +D  ++ + +  L    + A   +
Sbjct: 145 EFVASWVERTIRSI-RFVFDYMLLAAIIPFLVFYMVKDIDTMKKAVWYLTPSSWRARGSE 203

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             R V   +     G   + +  GL    ++W   +P  + LG++     +IP   P+  
Sbjct: 204 FIRDVDDSLGDYIRGQLFVCLVIGLGASLSFWFFDLPYPLILGLVIGATNVIPYFGPVIG 263

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ +    +      + +   I  FI    L P +VG  + +  +    GL+ G   
Sbjct: 264 AIPAVMVAAALSTRLVFVVIITILILQFIEGNILGPLVVGKSLHMHPVVIMLGLLAGGEL 323

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIK 350
            G++G+ +   +MA+I V+    + A K
Sbjct: 324 AGIIGMILAVPVMAVIKVMLVHFLAARK 351


>gi|21232218|ref|NP_638135.1| permease [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66767653|ref|YP_242415.1| permease [Xanthomonas campestris pv. campestris str. 8004]
 gi|21113976|gb|AAM42059.1| permease [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66572985|gb|AAY48395.1| permease [Xanthomonas campestris pv. campestris str. 8004]
          Length = 388

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 48/330 (14%), Positives = 124/330 (37%), Gaps = 12/330 (3%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           +L  +  L     P + AL++ +   P+          S      +  + ++ L ++ L+
Sbjct: 25  VLWVVSLLSPILTPFVLALLLAWLGDPLVDRIERA-GRSRNMAVTLVFILMVLLVVLALM 83

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            L      ++  L+  +       I      + IP     + +       P+ L     +
Sbjct: 84  ILVPMMERQIMTLIDALPQMRDWAIG-----TAIPWLQRRTGVELMGWLDPERLIEWIRS 138

Query: 140 FLKTNGI--DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
             +  G        + SR G   + + +++  + I  F+F RD   + +++ ++    + 
Sbjct: 139 HWEQAGGVAKTFFGYVSRSGFAMVTWVINLALLPILAFYFLRDWDRMVERVAAVIPRAYI 198

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-- 255
               +++     V+     G  ++ +  G +  +   + G+   + +G+I   ++ IP  
Sbjct: 199 GTVSRLALESNDVLGGFIRGQFLVMLALGAIYATGLSIIGLNLGLLIGIIAGFISFIPYL 258

Query: 256 -GGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
                I    ++  +  +G ++     + +   +   +    L P +VG  I L  +   
Sbjct: 259 GATTGIVLALLAAIVQAQGFDLKLLIGVGVVFTVGQLLESYVLTPRIVGDKIGLHPVAVI 318

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           F ++ G +  G LG+ +   + A+  V+ +
Sbjct: 319 FAVMAGGQLFGFLGMLLALPVAAVANVLLR 348


>gi|220913074|ref|YP_002488383.1| hypothetical protein Achl_2329 [Arthrobacter chlorophenolicus A6]
 gi|219859952|gb|ACL40294.1| protein of unknown function UPF0118 [Arthrobacter chlorophenolicus
           A6]
          Length = 436

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/320 (13%), Positives = 110/320 (34%), Gaps = 11/320 (3%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           +++AL I     P+     ++K      + +++   ++   +     L    + ++ E+V
Sbjct: 128 IVAALFIALGLEPVVKWLENRKIPRPAGI-LMSVAVLILAVVGFFATLIPTIVQQVTEIV 186

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
            +           P W+ D         L  +     +    L++     N +  I    
Sbjct: 187 QQA----------PTWVRDFMNSDLFRTLDDQFGVRDRIADELNKFVNDPNAMGGIAGGV 236

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
             FG    +     + +++   +F     ++ +    L         + +S  + K + +
Sbjct: 237 VGFGSTVANGLFGALIVLVLSLYFLAALPAMKKWGYRLAPRSRRHRVEALSDAITKSVGN 296

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
             +G   +A+           + G+P  + L  + A++A IP    +    V + + +  
Sbjct: 297 YVIGQACVALLNATFAFIVMSIVGIPFALLLAFVVALLAFIPLVGAMIAGVVVVLIALTV 356

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
               A    +     L      + P ++   + +P       ++ G   +G+LG  I   
Sbjct: 357 GWQTAAIYAICYFAYLQFEAYFISPRIMQKAVAVPGAVAVISVIAGGSLLGVLGALIAIP 416

Query: 334 LMALIAVIWKESIMAIKENK 353
             A I ++ KE  +  ++  
Sbjct: 417 TAAAILLLIKEIYIVRQDQH 436


>gi|239827828|ref|YP_002950452.1| hypothetical protein GWCH70_2491 [Geobacillus sp. WCH70]
 gi|239808121|gb|ACS25186.1| protein of unknown function UPF0118 [Geobacillus sp. WCH70]
          Length = 353

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 100/302 (33%), Gaps = 15/302 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P   A  I +   P+      K      + A      ++ ++ +    + Y     + 
Sbjct: 43  LIPFFIAAFITYLLHPLVEYIHEK--GIPRWAA------ILFIYFLFFGGIGYGLYKGIP 94

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT--NGIDF 148
             + ++   ++    +     +     W  ++  +  + P  +    E  L         
Sbjct: 95  LFIQQLKDLSESLPALIETYRN-----WTKQIHNQTSAWPMEIHTRIEAMLIQLEQTAAN 149

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
                       ++  +  + +   +F+  +D   + + +  +    +        + V 
Sbjct: 150 ALTMVINGVKGIVNSAMLFLLIPFIVFYMLKDIDQLKKAVWYITPKRWREPGIAFLKDVE 209

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           + + +   G   + +  G V     W+AG+   + LG I     +IP   P+  +  ++ 
Sbjct: 210 ESLGNYIRGQLFVGLLIGSVAAFLLWIAGMDYPLLLGFIIGATNIIPYFGPVIGSIPAVI 269

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L    ++     + +   +  F+    L P +VG  + +  L   F L  G    G+LGL
Sbjct: 270 LAATVSLKMVLIVAVIIFLLQFLEGNILSPLIVGKSLHMHPLAIMFALFFGGEIAGVLGL 329

Query: 329 FI 330
            +
Sbjct: 330 IV 331


>gi|295399322|ref|ZP_06809304.1| protein of unknown function UPF0118 [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312110117|ref|YP_003988433.1| hypothetical protein GY4MC1_1010 [Geobacillus sp. Y4.1MC1]
 gi|294978788|gb|EFG54384.1| protein of unknown function UPF0118 [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311215218|gb|ADP73822.1| protein of unknown function UPF0118 [Geobacillus sp. Y4.1MC1]
          Length = 353

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 101/302 (33%), Gaps = 15/302 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P + A  I +   P   S   K             ++++ ++ +    + Y     + 
Sbjct: 43  LIPFVIAAFITYLLHPFVESIHEKGIPR--------WMAILLIYFLFFGGIGYGFYKGIP 94

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L+ ++   ++    +     +     W  ++  +  + P  +    ET +         
Sbjct: 95  LLIQQLKDLSESLPALTETYRN-----WTKQIHNETSAWPLEIHTRIETMIVQLEQTAAN 149

Query: 151 RFASRF--GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
              +        ++  L  + +   +F+  +D   + + +  +    +        + V 
Sbjct: 150 ALTAVINGVKGIVNSALLFLLIPFIVFYMLKDIEQLKKAVWYMTPKRWRQPGLAFLKDVD 209

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           + + S   G   +    G V   A W+AG+   + LG I     +IP   PI     S+ 
Sbjct: 210 ESLGSYIRGQLFVGFIIGTVAALALWIAGMDYPLLLGFIIGATNIIPYFGPIIGAVPSVI 269

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L    ++     +        F+    L P +VG  + +  L   F L  G    G+LGL
Sbjct: 270 LAATVSLKMVLVVSAIIFFLQFLEGNILSPLIVGKSLHMHPLVIMFALFAGGEIAGVLGL 329

Query: 329 FI 330
            +
Sbjct: 330 IV 331


>gi|15613829|ref|NP_242132.1| hypothetical protein BH1266 [Bacillus halodurans C-125]
 gi|10173882|dbj|BAB04985.1| BH1266 [Bacillus halodurans C-125]
          Length = 358

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 53/320 (16%), Positives = 116/320 (36%), Gaps = 11/320 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            +Y LK    P+  A II +   P+  +   +         ++   +++ L +   +   
Sbjct: 36  FVYVLKRLLIPLGLAAIITYLFHPLIEAMHRR-GMGRGLAVLLVFGAMIALLVCFAVVGA 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
            Y + +++EL +            P  + D+ G +   E   + L HP   +  +     
Sbjct: 95  PYVLQQIEELTTSF----------PTVMKDVEGTVSKMEWQIQQLPHPFHNQAENWLNHL 144

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 +     R  ++ +   + +I +   + +F +D   I +    +    +    K+
Sbjct: 145 GKKAGNLLGQMERVIVVLIQSMVLLITVPFLVLYFLKDFDLIERAAWYVTPRKWRPSLKR 204

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             R V +       G  ++A+   +V   A WL GVP  + LG       +IP       
Sbjct: 205 YVRDVDRSFGRYIRGQLLVALSVAVVSMMALWLIGVPYPILLGGFIGATNIIPYFGAFIG 264

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++      +        +   +   +    L P +VG  + L  +     L+ GV  
Sbjct: 265 AVPALVFAYFESWPVLLATAIALFLLQQLEGNVLSPLIVGHSLHLHPITIILALLVGVEV 324

Query: 323 MGLLGLFIGPVLMALIAVIW 342
            G++GL +   ++A++ V +
Sbjct: 325 GGVIGLILAVPILAVLKVTF 344


>gi|320170312|gb|EFW47211.1| hypothetical protein CAOG_05155 [Capsaspora owczarzaki ATCC 30864]
          Length = 1229

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 69/192 (35%), Gaps = 5/192 (2%)

Query: 151  RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              A       +++ +S +  + +L++       +   L +    L   +   +S  +   
Sbjct: 975  NIALSVVSFMVNFGVSFVIFLSSLYYLLIAEHDVISALFNKLVMLDQHWKTNVSTRLSTS 1034

Query: 211  IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYL 269
            +   F      A    +    ++ + G+       ++ A  A++P   + +      + L
Sbjct: 1035 VTQVFSASLKTAAFHAIFTWLSFSVLGLDLVYISSLLAAFFALVPFVPSYLVSLIGFVQL 1094

Query: 270  LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            L     +    L     I  ++VD    P ++          T   ++ G+    L G+ 
Sbjct: 1095 LFDDYFWTGVFLVGAHLIVSWVVD----PEILTEIKHAHPYITGLSILLGLYAFDLPGVV 1150

Query: 330  IGPVLMALIAVI 341
            IGP+L+ ++ +I
Sbjct: 1151 IGPLLVCVVQLI 1162


>gi|296446894|ref|ZP_06888830.1| protein of unknown function UPF0118 [Methylosinus trichosporium
           OB3b]
 gi|296255569|gb|EFH02660.1| protein of unknown function UPF0118 [Methylosinus trichosporium
           OB3b]
          Length = 386

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 108/336 (32%), Gaps = 16/336 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
            L  Q       + + L+ +Y +    AP ++ L +G+   P+          S    ++
Sbjct: 17  TLERQLAFWAAAIALFLLFVYTVSAVLAPFVAGLALGYLLDPVADRLQRA-GFSRLGASL 75

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
                 + +    + F       ++ + V  +         +   +S    G +A  ++ 
Sbjct: 76  CILTVFLSIVTAVVFFAAPILTHQLSDFVVSLPGYLTTLQGLIARISREATGDFARSVYE 135

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRF------GMIFLDYCLSIIFMIIALFFFY 178
           K            + ++     +     A+        G   ++    ++   +  F+  
Sbjct: 136 KLGLSTADAPSEVQKYVNDITAEATRMAAAFVKSLVSGGAALVNMAALVVITPVVAFYIL 195

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D  ++   LD L         + I+R + + +     G  ++ +  GL       L GV
Sbjct: 196 LDWDNMVATLDQLVPPRHREDIRFIARGIDRALAGFVRGQALVCLFLGLWYSIGLSLLGV 255

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNI------FNATCLFLWGAIELFIV 292
                +GV   I++ +P    I+   +SI +              A  L   G       
Sbjct: 256 NFGFLIGVSAGILSFVPYVGSITAFVLSIVVATVQGWPDWSLPAEAVALVCAGLFLDG-- 313

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
              L P LVGG I +  +   F L+      G  G+
Sbjct: 314 -NVLSPRLVGGSIGVHPVWLMFALLAAGSLFGFTGM 348


>gi|229141127|ref|ZP_04269669.1| hypothetical protein bcere0013_42210 [Bacillus cereus BDRD-ST26]
 gi|228642405|gb|EEK98694.1| hypothetical protein bcere0013_42210 [Bacillus cereus BDRD-ST26]
          Length = 361

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 50/311 (16%), Positives = 110/311 (35%), Gaps = 11/311 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L A  I +   P+      +            T++++ ++I+    + Y       
Sbjct: 49  ITPFLIACFIAYLLHPLIEKIHKEGMPR--------TLAILLIYILFFGGIGYGIYKGTP 100

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            ++ ++   N+      +       G+      T +       K+          I  + 
Sbjct: 101 VVIKQLQEINEQFPQFTKMYDSWMDGVTEQ---TANFPSFIHEKVKQIFIGVETKIQALL 157

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     LD  L I  +   +F+  +D          L    + +  + +++ + K 
Sbjct: 158 NKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQILAKEIDKS 217

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G   + +  G V   ++W  G+   + LG+I  I  +IP   PI     ++ + 
Sbjct: 218 LGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGITDIIPYFGPILGAIPALMIA 277

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +        +  AI  F+    L P++VG  +++  +     L+ G    G++GL I
Sbjct: 278 ATVSTSLLIKAGITIAILQFVESNILSPYIVGKSLRMHPVVIMLALLVGGEVAGIVGLLI 337

Query: 331 GPVLMALIAVI 341
              ++A+I  +
Sbjct: 338 SVPVLAVIRTV 348


>gi|163733469|ref|ZP_02140912.1| hypothetical protein RLO149_17498 [Roseobacter litoralis Och 149]
 gi|161393257|gb|EDQ17583.1| hypothetical protein RLO149_17498 [Roseobacter litoralis Och 149]
          Length = 355

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 57/328 (17%), Positives = 123/328 (37%), Gaps = 16/328 (4%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            ++LV+L FL     P +    I +   P+      +   S      I T+  M +F + 
Sbjct: 17  AVLLVALMFLGDVLLPFVLGGAIAYFLDPVADRLE-RLGLSRVAATAIITLCGMMVFFIV 75

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS-ELWTKHLSHPQSLKIL 136
            L +    + +  +LV+            P +  +I   +           S  Q     
Sbjct: 76  ALLVIPALVEQAVKLVN----------VAPEYARNITAFLTERFPTLLDEDSAMQRSLHS 125

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               +++ G + +    S    +     L +I  ++A+ +   D  +++ ++DSL     
Sbjct: 126 LGETIQSRGAELLETALSSAASLLNVLILLVIVPVVAV-YLLLDWDNMTAKIDSLLPRDH 184

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               ++++  + +V+ S   GM  + +  G     A  LAG+   + +G I  ++  IP 
Sbjct: 185 APTIRQLASQIDQVLASFIRGMGTVCLILGTYYAIALMLAGLQFGLVVGFIAGLVTFIPY 244

Query: 257 GAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
              +   A++I L +    G+  +   +    A+   +    + P LVG  + L  +   
Sbjct: 245 LGALIGGALAIGLALFQFWGDWVSVGIIAGIFALGQVLEGNVITPKLVGNSVGLHPVWLL 304

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             L       G +G+ +   + A + V+
Sbjct: 305 LALSVFGALFGFVGMLVAVPVAAALGVV 332


>gi|310828610|ref|YP_003960967.1| Predicted permease [Eubacterium limosum KIST612]
 gi|308740344|gb|ADO38004.1| Predicted permease [Eubacterium limosum KIST612]
          Length = 402

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 90/260 (34%), Gaps = 4/260 (1%)

Query: 105 PVPRWLSDIPGG-MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR---FASRFGMIF 160
            V  W + + G     ++  ++      +       FL+   + F+      AS      
Sbjct: 125 QVEEWATGLAGSYPDIAKQISEITIDWTNFGSEIVDFLQKGLMSFVGSTFNVASSIASGV 184

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
           +++ L  IF +  L    + G    +   +           ++ R+      S   G   
Sbjct: 185 VNFSLGFIFALYVLLQKEKLGSQFRKLFYAYLPERVTDKLLEVFRLSNSTFSSFVTGQCT 244

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC 280
            A+  G +      +  +P  + +GV+   +++IP         V  +L++  N   A  
Sbjct: 245 EAVILGAMFVVVMLIFRLPYALMIGVLIGFLSLIPIFGAFIGCFVGAFLILMVNPMQAFW 304

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
             +   I   I    + P +VGG + LP +     +  G   MG+ G+ I   L ++   
Sbjct: 305 FIVIFLIIQQIEGNLIYPHVVGGSVGLPSIWVLVAVTIGGGAMGITGMIITIPLCSVCYT 364

Query: 341 IWKESIMAIKENKEKISSNF 360
           + +E+       +      +
Sbjct: 365 LLREATGKRLSRRRVPEEKY 384


>gi|288555382|ref|YP_003427317.1| putative autoinducer export protein AI-2E [Bacillus pseudofirmus
           OF4]
 gi|288546542|gb|ADC50425.1| putative autoinducer export protein AI-2E [Bacillus pseudofirmus
           OF4]
          Length = 354

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 90/245 (36%)

Query: 96  VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASR 155
           +         +P+ +++I   +   +   + L  P  + I   +                
Sbjct: 98  IEQVQHAMTVLPQQITEIEKMIIQIQTQARALPSPIRVHINEWSTQAGVLGAKALDQIEV 157

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
             +  +    S++ +   +F+F +D   I +    L    +    K+ ++ V     S  
Sbjct: 158 LALWLIQSIFSLMVVPFLVFYFLKDFDLIEKVSWYLTPRKWRPGLKRYAKDVDHSFGSYI 217

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNI 275
            G  ++A+   ++    +WL GVP  + LGV      MIP          +I + +  + 
Sbjct: 218 RGQLLVALAVTIISSLGFWLIGVPYPILLGVFMGATEMIPYFGAYIGAVPAIIIALFESW 277

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             A     +  I   I    L P +VG  + L  +     LV G+   G++GL +    +
Sbjct: 278 QLALITAGFILILQQIEGNILSPVIVGKTLHLHPILIILALVIGIEAGGVIGLLLAVPAL 337

Query: 336 ALIAV 340
           A++ V
Sbjct: 338 AILKV 342


>gi|239979662|ref|ZP_04702186.1| integral membrane protein [Streptomyces albus J1074]
          Length = 481

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 103/307 (33%), Gaps = 19/307 (6%)

Query: 17  MFIILVSLYFLKGFFAPV---LSALIIGFTSWPIYS---SFISKKEESSTFLAVIATVSV 70
           + ++  +L+ L      V   + A I       +     + + +          +  V  
Sbjct: 112 LLVLAGTLWVLMKVIVSVQLVVFAFIAALLVTALLQPTVTALRRMGMPRGAATAVTAVLG 171

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             +  +   F+ +  M  +  L S+V         +  WL + P  +   ++     +  
Sbjct: 172 FVIMGLVGWFVVWQVMENIDTLASQVQDGIDE---LRGWLLNSPFHVTEDQINDIAKTLR 228

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            ++   +E                    + ++    ++  + +  F   DG  I +   +
Sbjct: 229 DAVGTNTEELTSAGLEGV---------TVLVEVLTGMVLAMFSTLFLLYDGKRIWRWTLN 279

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L                 + + +   G  ++A+ + + +G   W   VP  V L V   +
Sbjct: 280 LVPAQARPGIAGAGPRAWRTLTAYVRGTVMVALIDAIFIGLGLWFLDVPMAVPLAVFIFL 339

Query: 251 MAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            A IP    +   A+++ + L+   +F A  + +       I    L+PF++G  +++  
Sbjct: 340 FAFIPLVGAVVSGALAVVVALVTQGVFTALMVLIVVLAVQQIEGHILQPFILGRAVRVHP 399

Query: 310 LPTFFGL 316
           L     +
Sbjct: 400 LAVVLSV 406


>gi|167589269|ref|ZP_02381657.1| hypothetical protein BuboB_28291 [Burkholderia ubonensis Bu]
          Length = 119

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 51/118 (43%), Positives = 74/118 (62%)

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
           G AY LAGVP    LG++TAI AM+P  API F   +++L ++G    A  +   G + +
Sbjct: 2   GIAYVLAGVPHAALLGLVTAIAAMLPFCAPIVFCGAALWLFVQGATAWAVAVAATGFVVV 61

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           F+ +  +RP L+G   +LPFL   FG++GG  T GLLGLFIGP LM ++ ++W E + 
Sbjct: 62  FVAEHFVRPVLIGSSARLPFLLVLFGILGGAETFGLLGLFIGPALMTVLTMLWAEWVA 119


>gi|125975677|ref|YP_001039587.1| hypothetical protein Cthe_3199 [Clostridium thermocellum ATCC
           27405]
 gi|281416685|ref|ZP_06247705.1| protein of unknown function UPF0118 [Clostridium thermocellum JW20]
 gi|125715902|gb|ABN54394.1| protein of unknown function UPF0118 [Clostridium thermocellum ATCC
           27405]
 gi|281408087|gb|EFB38345.1| protein of unknown function UPF0118 [Clostridium thermocellum JW20]
          Length = 349

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 59/321 (18%), Positives = 122/321 (38%), Gaps = 9/321 (2%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             PVL   +I +   PI     SK   S T   ++  +    L    ++F+    +   +
Sbjct: 35  IFPVLLGAVIAYILRPIVLKLESK-NISRTKSIIMIYLVFGILLTTAVIFIAPIFVDNTR 93

Query: 91  ELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           E ++ V  +  ++G    + L  I    W++E+     +   +   ++E  L       +
Sbjct: 94  EFINTVPEITTEYGEKFNKILKMIDTSGWSAEVKNAIYNEINNGVNIAENMLMDALRKTL 153

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                    I      +II  +I  ++  +D     +   SL    +        R + +
Sbjct: 154 VWLFKSLTGIS-----NIILGMIIAYYIMKDAEFFKKGALSLVPRRWRNEIIGTCREINE 208

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
           ++     G  + A+  G++   A  + GV     LG I  I  +IP   P      S+ +
Sbjct: 209 ILSCFIQGQLLTALIIGIMETVALAIIGVKYSPILGFIGGISNIIPYFGPFIGAIPSVAV 268

Query: 270 LIKGNIFNATCLFLWGAIELFIVDK-TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
            +  +   A    +   + +  +D   + P ++ G + L  + T   ++ G    G++G+
Sbjct: 269 ALIDSPVKA-FWTVVAFLVVQQIDNAFISPKIIEGRLGLHPITTILAVLAGGEFFGIIGM 327

Query: 329 FIGPVLMALIAVIWKESIMAI 349
            +   + A++ VI K  I AI
Sbjct: 328 LVAVPVTAVLKVILKRLIEAI 348


>gi|261209892|ref|ZP_05924193.1| permease PerM [Vibrio sp. RC341]
 gi|260841078|gb|EEX67603.1| permease PerM [Vibrio sp. RC341]
          Length = 358

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 55/355 (15%), Positives = 122/355 (34%), Gaps = 14/355 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P       I+    +++YF     AP+L A+++ +   WP+    + +     T   +I
Sbjct: 15  DPHAASLVAILLFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQ--LRRLRIPRTLAVII 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
                  L I+ +  L      ++  L++ V             L +    +   E+   
Sbjct: 73  VITVFTGLMILAVFGLVPTIWKQVGNLINDVPNMYNGTQKFITTLPERFPELAHLEIVES 132

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            +++ ++  +     +    +  +   A+          + +I + + +FF  +D   + 
Sbjct: 133 VINNAKNKVLGMGETVVKGSLASLVSLAT--------LGVYLILVPLLVFFLLKDKQEML 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +          K+   + + I +   G  +  +  G V    + +  +   V L 
Sbjct: 185 RMASGILPR-NRKLATKVWEEMNQQISNYIRGKVLEIVIVGTVSYITFAILDLRYSVLLA 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V   +  +IP  GA      V+I  L + G       L +   I   +    L P L   
Sbjct: 244 VAVGLSVLIPYIGAAAVTVPVAIVALFQWGLTPPFYTLLIAYGIIQALDGNVLVPVLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            + L  +     ++      G  G+F    L  L+  +WK      +E  ++  S
Sbjct: 304 AVNLHPVAIIIAVLVFGGLWGFWGVFFAIPLATLVKAVWKALPSIDEEPNKESYS 358


>gi|171779330|ref|ZP_02920294.1| hypothetical protein STRINF_01175 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281947|gb|EDT47378.1| hypothetical protein STRINF_01175 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 371

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 60/335 (17%), Positives = 127/335 (37%), Gaps = 14/335 (4%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA---VIATVSVMCLFIVPLLFLFYY 84
           + F      A I+      +Y    ++  ++   L     ++ +S    FI+ + +LF  
Sbjct: 40  QPFLIGAGIAYIVNIVMS-LYEMIFTRLIKNKYLLKVKRAVSMISAYLTFILLISWLFSI 98

Query: 85  GMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
            + ++   ++ ++  +  GI    + ++D          +        +L   S+  L  
Sbjct: 99  VLPDLIASINSLLKIDTSGIANFIKEVNDNKVVKDVLAYFGTSSDVTTTLSDYSQQILNQ 158

Query: 144 NGIDF--IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                  I    S      L+  +S++F I  L         +S+Q + L +     Y K
Sbjct: 159 VLSVLTSILTSVSTIASTLLNVFISLVFSIYVL----ASKEQLSRQFNLLIDSYLGKYAK 214

Query: 202 KI---SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
            +     I+ +     F+G T+ A+  G +      L  +P    +G++ A  A+IP   
Sbjct: 215 TVHYVLDILHQRFHGFFVGQTLEAMILGSLTAGGMLLLHLPYAATIGILVAFTALIPVVG 274

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
                 +   L+   ++  A    ++  +        + P +VGG I LP +     +  
Sbjct: 275 AYIGLTIGFILIATQSVSQAIFFVIYLVVLQQFEGNLIYPRVVGGSIGLPGMWVLMAITI 334

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G    G+LG+ +   L A +  I K+++   +EN+
Sbjct: 335 GAALWGVLGMLVAVPLAASLYQIIKDNVAKRQENR 369


>gi|237713414|ref|ZP_04543895.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262406786|ref|ZP_06083335.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646015|ref|ZP_06723680.1| membrane family protein [Bacteroides ovatus SD CC 2a]
 gi|294806044|ref|ZP_06764904.1| membrane family protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229446653|gb|EEO52444.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262355489|gb|EEZ04580.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638586|gb|EFF56939.1| membrane family protein [Bacteroides ovatus SD CC 2a]
 gi|294446763|gb|EFG15370.1| membrane family protein [Bacteroides xylanisolvens SD CC 1b]
 gi|295084671|emb|CBK66194.1| Predicted permease [Bacteroides xylanisolvens XB1A]
          Length = 377

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 61/334 (18%), Positives = 123/334 (36%), Gaps = 16/334 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L G   P   A +I +  +P+   F  K    S  +++  ++ ++ +  V L +L     
Sbjct: 31  LSGVLLPFFIAWLIAYMVYPLVKFFQYKLRLKSRIISIFCSLFLITVIGVTLFYLL---- 86

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
             +  ++S++   N   +      +        SE   +++      ++LSE  +     
Sbjct: 87  --VPPMISEIGRMNDLLVTYLTNGAGNNVPKSLSEFIHENIDLQALNRVLSEENILAAIK 144

Query: 147 DFIPR---FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           D +PR     +    I      S I ++  +F    D  +I++    L  + +  +   +
Sbjct: 145 DTVPRVWTLLAESLNILFSILASFIILLYVIFILL-DYEAIAEGWLHLLPNKYRTFASNL 203

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
              V   +   F G  ++A   G++    + +   P  +ALG+    + M+P    I F 
Sbjct: 204 VHDVQDGMNRYFRGQALVAFCVGILFSIGFLIIDFPMAIALGLFIGALNMVPYLQIIGFL 263

Query: 264 AVSIYLLI----KGNIFNATC--LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
              +  ++     G  F           AI   I D  L P ++G    L        L 
Sbjct: 264 PTILLAILKAADTGQNFWIIIACALAVFAIVQIIQDTFLVPKIMGKITGLNPAIILLSLS 323

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
                MG+LG+ I   L  L+   ++  I+  ++
Sbjct: 324 IWGSLMGMLGMIIALPLTTLMLSYYQRFIINKEK 357


>gi|261345963|ref|ZP_05973607.1| permease, PerM family [Providencia rustigianii DSM 4541]
 gi|282566051|gb|EFB71586.1| permease, PerM family [Providencia rustigianii DSM 4541]
          Length = 360

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 50/355 (14%), Positives = 113/355 (31%), Gaps = 18/355 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +PQ +  + ++ I  + ++F     AP+L A++  +   WP +   + +   S  
Sbjct: 10  RRRFADPQAVALFSLLVIGFLVIFFFSSILAPLLVAIVFAYLLEWPTH--LLQRIGLSRV 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               I       +  + +L +      +   LV+ +            +   +P    A 
Sbjct: 68  LSVSIILTLFAGISAMVILIIAPTAWQQGMNLVADLP---NMVTRFSEFAQKLPEQYPAL 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                      +++        +     +               + ++ + + +FF  +D
Sbjct: 125 VDAGIIDMMADNIRSRLSNVADSVVKASVASLIG-----IFTLAIYLVLVPLMIFFLLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              IS+    L          K+   + + I +   G     +  G+     +    +  
Sbjct: 180 KERISKSFLKLLPR-NRLLVSKVWLEMNQQITNYLRGKVTEMVIVGVCTYIGFAYFDLRY 238

Query: 241 HVALGVITAIMAMIP----GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
            V L V+  +  +IP      A I    V+++    G+ F +  L +   +   +    +
Sbjct: 239 SVLLSVLVGVSVLIPYIGAVAATIPVVLVALFQWGVGSEFWS--LLIVYLVIQGLDSNIV 296

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            P L    + L  L     +V      G  G+F    L  LI  +       + +
Sbjct: 297 VPLLYSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVINAWPQDVND 351


>gi|194447650|ref|YP_002046556.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|200386480|ref|ZP_03213092.1| permease PerM [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|205360471|ref|ZP_02683443.2| permease PerM [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|194405954|gb|ACF66173.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|199603578|gb|EDZ02123.1| permease PerM [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|205349638|gb|EDZ36269.1| permease PerM [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
          Length = 362

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 52/347 (14%), Positives = 115/347 (33%), Gaps = 14/347 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +P+ I   +I+      L+F  G  AP+L A+++ +   WP  +   +       
Sbjct: 17  RRRFSDPEAIALLVILVAGFSILFFFSGLLAPLLVAIVLAYLLEWP-TARLQAIGCSRRW 75

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             +++  + V  L ++  + +       +  +     + N+            P  M A 
Sbjct: 76  AASIVLILFVGILLLMAFVVMPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 135

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +     +    +  + ++ +K +    +           L   + ++ + + +FF  +D
Sbjct: 136 IIDAMAENMRTRMLNMGDSVVKYSLASLV---------GLLTLAVYLVLVPLMVFFLVKD 186

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +          ++   + + I +   G  +  +  G+     + L G+  
Sbjct: 187 KEQMLNAVRRVLPRNRGLAG-QVWNEMNQQITNYIRGKVLEMVVVGVATWLGFLLFGLNY 245

Query: 241 HVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V+     +IP  GA +    V  + L   G        F    I   +    L P
Sbjct: 246 SLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGLGTEFWSCFAVYLIIQALDGNLLVP 305

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L    + L  L     +V      G  G+F    L  LI  +    
Sbjct: 306 VLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVHAW 352


>gi|165933552|ref|YP_001650341.1| permease [Rickettsia rickettsii str. Iowa]
 gi|165908639|gb|ABY72935.1| permease [Rickettsia rickettsii str. Iowa]
          Length = 356

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 56/355 (15%), Positives = 122/355 (34%), Gaps = 7/355 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           MR+ ++N   I   + + + +     +     P   A II +   P      SK + S+ 
Sbjct: 1   MRKIIMNRTVIFWLVFLGLFISGFMLISDAIKPFFIAFIISYLLQPAIGFIASKFKISNK 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           F + I  +  + +F + L  L      ++   ++ +   N +          +P  M   
Sbjct: 61  FASSIIYLIFLSIFFLSLTILVPIIYGQIFTFINNIPKYNNYLQAEI-----LPPIMVKI 115

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                 ++      + +        +  I     R+ +I ++  +  + + I LF+F RD
Sbjct: 116 YSIEPDIADKIKNSLSNFINSIFTILGSIANNFWRYTIITINIFVLFLLIPIILFYFLRD 175

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   + SL           I   +  ++ +   G   I +        A+ + G+  
Sbjct: 176 WAKIIANMKSLLPIKTRPKILAILSAINNLLSAYIRGQLNICLLLSTYYSIAFTVIGIDL 235

Query: 241 HVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + LG++T  + +IP           + I  L  G       + +   +          P
Sbjct: 236 ALLLGILTGFLVIIPFLGTFISFLLTLIIGYLTFGVTTKLLYIMIIYLVGNICESYIFTP 295

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            ++G  I L  L   F +       G++G+F    +  +  ++    I   K ++
Sbjct: 296 KIIGDKIGLHPLWIIFSIFACGSLFGIIGIFFAIPIAGITKILLLNLIKFYKSSQ 350


>gi|290956980|ref|YP_003488162.1| hypothetical protein SCAB_24961 [Streptomyces scabiei 87.22]
 gi|260646506|emb|CBG69603.1| putative membrane protein [Streptomyces scabiei 87.22]
          Length = 427

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 52/357 (14%), Positives = 119/357 (33%), Gaps = 22/357 (6%)

Query: 8   PQGIMRWMIMFIILVSLYF--------LKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           P+ + R M++ + L++++         L G    +L A  +     P  S   SK     
Sbjct: 2   PRWLPRAMVLALSLIAVFQFGSWAFHQLIGLLVNILIAFFLALAIEPAVSWMASK-GMRR 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
            F + +       +F++ L+    +  L    L  +++   +        +       + 
Sbjct: 61  GFASFL-------VFLITLIGAAGFVTLLGSMLAGQIIKMVEDFPAYLDSVISWINTSFH 113

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           +EL    +          + +++ +    +   A   G +F      ++ + +  F+F  
Sbjct: 114 TELRRVDIQEGLLRSDWLQKYVQNSATGVLDVSAQVLGGLF-----QLLTIALFSFYFAA 168

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  + + L S+      A   +   I             ++A+  G           VP
Sbjct: 169 DGPRLRRALCSVLPPSKQAEVLRAWEIAVDKTGGYLYSRGLMALISGAAHYVLLEYLDVP 228

Query: 240 SHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              AL V   +++  IP        A+ + +    N + A  + ++  I     +  L+P
Sbjct: 229 YAPALAVWVGLVSQFIPTIGTYLAGALPMLIAFTVNPWYALWVLVFVVIYQQFENYVLQP 288

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            L    + +     F  ++ G   +G +G  I    +A +       +       + 
Sbjct: 289 KLTAKTVDIHPAVAFGSVIAGTALLGAVGALIAIPAVATLQAFLGAYVKRYDVTDDP 345


>gi|261340788|ref|ZP_05968646.1| permease, PerM family [Enterobacter cancerogenus ATCC 35316]
 gi|288317212|gb|EFC56150.1| permease, PerM family [Enterobacter cancerogenus ATCC 35316]
          Length = 354

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 59/347 (17%), Positives = 118/347 (34%), Gaps = 14/347 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +P+ I   +I+      L+F  G  AP+L A+++ +   WP  +   +       
Sbjct: 10  RRRFSDPEAIALLVILVAGFGILFFFSGLLAPLLVAIVLAYLLEWP-TARLENIGCSRRW 68

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
                AT  V+ LF+  LL + +  M        + +   +    +   LSD    +   
Sbjct: 69  -----ATSIVLVLFVGILLLMAFVVM---PVAWQQGIYLIRDMPGMLNKLSDFAATLPRR 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                      ++       + T G D + +++    +  L   + ++ + + +FF  +D
Sbjct: 121 YPALMDAGIIDAMAENMRARIMTMG-DSVVKYSLASLVGLLTLAVYLVLVPLMVFFLVKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +          ++   + + I +   G  +  I  G+     + + G+  
Sbjct: 180 KEQMLNAVRRVLPRNRGLAG-QVWEEMNQQITNYIRGKVLEMIVVGVATWIGFVIFGLNY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V+     +IP  GA +    V  + L   G        F    I   +    L P
Sbjct: 239 SLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGLGTEFWSCFAVYLIIQGLDGNLLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L    + L  L     +V      G  G+F    L  LI  +    
Sbjct: 299 VLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVHAW 345


>gi|257387204|ref|YP_003176977.1| hypothetical protein Hmuk_1144 [Halomicrobium mukohataei DSM 12286]
 gi|257169511|gb|ACV47270.1| protein of unknown function UPF0118 [Halomicrobium mukohataei DSM
           12286]
          Length = 341

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 57/363 (15%), Positives = 127/363 (34%), Gaps = 29/363 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M   M   QG++  ++    L+++  L      V  A+ + +  +P+    + +      
Sbjct: 1   MYCGMRRRQGVLVGLVAATGLLTIVLLWSVVTTVFFAITVAYVLYPLRRLLVERGTHRRI 60

Query: 61  FLAVIATVSVMCL--FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
             A   +V+ + +   IVPLL+                    +    +  +L  +P    
Sbjct: 61  AAAAATSVAFLAVAALIVPLLW-----------------SLYRRRDTLLAYLRTLPTSFE 103

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
              L         SL   +   +    ++ +   A   G       L +    + ++   
Sbjct: 104 FEVLGMPFGFEVGSLAATARVAITNLAVE-VAGSAPIIG-------LKLFLFTLLVYALL 155

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
               +    +       + +  + +       + + ++     A+G  L+    +   G 
Sbjct: 156 LRPSAAPAVVFRAVPEEYQSLVRTMHERTRNTLYAIYVLQGATALGTFLIAYLVFAGLGY 215

Query: 239 PSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTL 296
           P    L  +  I+  +P  G  I    V+   ++ G++  A  L + G + + F+ D  +
Sbjct: 216 PGAFGLAAVAGILQFVPVVGPSILIAVVAATDVVAGDLTGAATLLVIGLVFVGFLPDAII 275

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           RP L      +P    F G  GGV ++G++G   GP+++AL     +         + ++
Sbjct: 276 RPQLAPYTADIPASLYFIGFTGGVLSIGIVGFIAGPLVVALFVEAVELLTNERPTVQRQL 335

Query: 357 SSN 359
            S 
Sbjct: 336 DSE 338


>gi|226311488|ref|YP_002771382.1| hypothetical protein BBR47_19010 [Brevibacillus brevis NBRC 100599]
 gi|226094436|dbj|BAH42878.1| conserved hypothetical membrane protein [Brevibacillus brevis NBRC
           100599]
          Length = 354

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 51/341 (14%), Positives = 120/341 (35%), Gaps = 15/341 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           W++  ++      +K    PV+  L+I +   PI      ++            ++V+ +
Sbjct: 27  WLLRPVLSQLFSLIKEVLVPVILGLVIAYLLHPIVQLLEKRRVPR--------LMAVLLI 78

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           +   +L +    +  +     ++V  +     +  W        W SE   +    P S+
Sbjct: 79  YGSFVLVITIAIINAIPVFTKQLVELSDDIPRLMDW-----YYTWMSEWEARKYFLPDSI 133

Query: 134 KILSETFLKTNGIDFIPRFASRF--GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
               +  +  +        +         +    +   +    F+F +D   + +   S+
Sbjct: 134 SKGVDRVIIQSNEGMSHSVSKIVDNAKHSMGKLFAFAIVPFIAFYFLKDMKQLHETGMSI 193

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +      + R + + +     G  ++A+  G+     YW  G+P    L     + 
Sbjct: 194 VPKAYRKQVLIVLRDINESLGKYIHGQMMVALIVGVFAYLGYWWIGMPYPFVLAAFVCLT 253

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP   P+   A ++ + I  +      + +   I   +    L P +VG  + L  L 
Sbjct: 254 NIIPYIGPLIGAAPAVVIAITISTKTLLLVVVVNLIIQIVEGNILSPNIVGRSLHLHPLL 313

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
               L+ G    G++GL +   ++A+  VI     + + E+
Sbjct: 314 IILALLVGETVGGIIGLIVAVPILAVCKVIVSRIAVMMHES 354


>gi|166031304|ref|ZP_02234133.1| hypothetical protein DORFOR_00991 [Dorea formicigenerans ATCC
           27755]
 gi|166028709|gb|EDR47466.1| hypothetical protein DORFOR_00991 [Dorea formicigenerans ATCC
           27755]
          Length = 386

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 51/329 (15%), Positives = 111/329 (33%), Gaps = 13/329 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESS--------TFLAVIATVSVMCLFIVPLLFLF 82
             P L    I F      +                       ++ +SV+C+ +  L  + 
Sbjct: 42  IFPFLLGGAIAFVLNVPMNFIERHLFTEKVRKNKVADKLARPVSLLSVLCIVVGVLTVVI 101

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMW-ASELWTKHLSHPQSLKILSETF 140
           +  + ++      +  +    IP  + W  ++  G     EL          +      F
Sbjct: 102 FGVVPQLVNTFGNLGQSITQFIPHAQAWGKEVFHGNKEVVELINSVQFDWDKIVETLIDF 161

Query: 141 LKTNGIDFI---PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
           LK    + +      A         + ++ +F I  L    + G    + L +       
Sbjct: 162 LKNGAGNMLNSTLTAAKSIISGVSTFVIAFVFAIYILLQKKKLGIQAKKVLFAFVRRGRA 221

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
               ++S +      S   G  + A+  G +   A  +  +P  + +G+  A  A+IP  
Sbjct: 222 EAVVEVSSLTYSTFSSFLTGQCLEAVILGSMFVLAMTIFRLPYALLVGIFIAFTALIPIF 281

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
                 AV  +L+   +   A    +   +   I    + P +VG  + LP +     + 
Sbjct: 282 GAFLGCAVGAFLIFMVDPMKALMFIVLFLVLQQIEGNLIYPHVVGNSVGLPSIWVLAAVS 341

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            G   MG++G+ I   ++++   +++E +
Sbjct: 342 IGGSLMGVVGMLIFIPIVSVAYALFREIV 370


>gi|325290370|ref|YP_004266551.1| sporulation integral membrane protein YtvI [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965771|gb|ADY56550.1| sporulation integral membrane protein YtvI [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 369

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 49/324 (15%), Positives = 122/324 (37%), Gaps = 9/324 (2%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F+P +  +I  F   P+             + +++A   ++ L I+ ++        E+ 
Sbjct: 52  FSPFILGIIFAFLMEPLVQKLCRNFRIKRVYSSILALSCIVFLMILLMIIAGNRLYHELA 111

Query: 91  ELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHL-SHPQSLKILSETFLKTNGIDF 148
           +L +      ++ +  V   + +I   +  +      L S  Q +   ++  +K   I  
Sbjct: 112 DLTAAFPGLYENNMAFVGNQIDNIEKYIRLNPEIQNALKSSSQEIFSYAQVAVKNGSIGL 171

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +             + + I+ ++++         ++ +      +    +  + ++  + 
Sbjct: 172 L-----NILGSLPGFLVVIMVLVVSTLLTSISYPAVKEWFFRRFKEPLASKTRIVAAELG 226

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSI 267
             +       +I+     LV+ +   + G      LG++T +M ++P  G  + F   +I
Sbjct: 227 SALIGFLRAESILLSVTSLVVITGLLIIGNEYAFTLGLLTGLMDLLPVIGPGVIFIPWAI 286

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            + I   I  A  +    A    ++ + L P ++   I L  LPT   +  G+  +G  G
Sbjct: 287 IVFISSGIGPALKILAVYA-AATVIRQILEPKIMSHNIGLHPLPTLISMYVGLNLLGAAG 345

Query: 328 LFIGPVLMALIAVIWKESIMAIKE 351
           + +GP ++ +     K  +   KE
Sbjct: 346 IILGPTVIVIYEACRKAGLFNRKE 369


>gi|260174265|ref|ZP_05760677.1| putative permease [Bacteroides sp. D2]
 gi|293370047|ref|ZP_06616614.1| membrane family protein [Bacteroides ovatus SD CMC 3f]
 gi|299147768|ref|ZP_07040831.1| putative membrane protein [Bacteroides sp. 3_1_23]
 gi|315922536|ref|ZP_07918776.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|292634965|gb|EFF53487.1| membrane family protein [Bacteroides ovatus SD CMC 3f]
 gi|298513951|gb|EFI37837.1| putative membrane protein [Bacteroides sp. 3_1_23]
 gi|313696411|gb|EFS33246.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 377

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 61/334 (18%), Positives = 123/334 (36%), Gaps = 16/334 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L G   P   A +I +  +P+   F  K    S  +++  ++ ++ +  V L +L     
Sbjct: 31  LSGVLLPFFIAWLIAYMVYPLVKFFQYKLRLKSRIISIFCSLFLITVIGVTLFYLL---- 86

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
             +  ++S++   N   +      +        SE   +++      ++LSE  +     
Sbjct: 87  --VPPMISEIGRMNDLLVTYLTNGAGNNVPKNLSEFIHENIDLQALNRVLSEENILAAIK 144

Query: 147 DFIPR---FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           D +PR     +    I      S I ++  +F    D  +I++    L  + +  +   +
Sbjct: 145 DTVPRVWTLLAESLNILFSILASFIILLYVIFILL-DYEAIAEGWLHLLPNKYRTFASNL 203

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
              V   +   F G  ++A   G++    + +   P  +ALG+    + M+P    I F 
Sbjct: 204 VHDVQDGMNRYFRGQALVAFCVGILFSIGFLIIDFPMAIALGLFIGALNMVPYLQIIGFL 263

Query: 264 AVSIYLLI----KGNIFNATC--LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
              +  ++     G  F           AI   I D  L P ++G    L        L 
Sbjct: 264 PTILLAILKAADTGQNFWIIIACALAVFAIVQIIQDTFLVPKIMGKITGLNPAIILLSLS 323

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
                MG+LG+ I   L  L+   ++  I+  ++
Sbjct: 324 IWGSLMGMLGMIIALPLTTLMLSYYQRFIINKEK 357


>gi|126433854|ref|YP_001069545.1| hypothetical protein Mjls_1252 [Mycobacterium sp. JLS]
 gi|126233654|gb|ABN97054.1| protein of unknown function UPF0118 [Mycobacterium sp. JLS]
          Length = 376

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 103/301 (34%), Gaps = 14/301 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             PV+ ALI+    WP       K        AV+  + V    +  L+      ++E  
Sbjct: 49  LLPVVLALIVCTVLWPPVRWLRGK--GVPPAAAVLLILLVALGLLSGLVAAVAPAIVEQS 106

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
                   A    + V  WL   P  +  ++L +   +    L   S           I 
Sbjct: 107 T--ELAQQATAGVVQVRDWLGGPPLDISEAQLDSAVTAITDRLNSSSAQ---------IA 155

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                         ++    I+  FF  +DG      L     +    +  ++   V   
Sbjct: 156 SGVFTGVGAATSALVTAFTAIVVTFFLLKDGPRFIPWLRRTVGNPAAPHVAEVLERVWST 215

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
           +        ++++ + +++G+   + GVP   AL +IT I   +P  GA ++     +  
Sbjct: 216 LGGFIRTQALVSLVDAVLIGAGLVILGVPLAYALAIITFIGGFVPIVGAFVAGGLAVLIA 275

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           L+     +A  +         +    L+P+L    +KL  +     +  G  T G++G F
Sbjct: 276 LVSNGPVDALIVLGIILAVQQLEGNVLQPWLQSKSMKLHAVIVLLAVTLGASTFGVIGAF 335

Query: 330 I 330
           +
Sbjct: 336 L 336


>gi|306829383|ref|ZP_07462573.1| membrane protein [Streptococcus mitis ATCC 6249]
 gi|304428469|gb|EFM31559.1| membrane protein [Streptococcus mitis ATCC 6249]
          Length = 369

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/342 (12%), Positives = 113/342 (33%), Gaps = 8/342 (2%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           II   +  +     P L      + + PI +    + + +     ++   +++   +V +
Sbjct: 30  IITPFVTVINTIMIPFLLGGFFYYLTNPIVTFLEKRCKINRLIGVLVTLCALIGAIVVGV 89

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           ++L    + ++  L+            +   L D+   +  + ++          ++   
Sbjct: 90  VYLLPILINQLTSLIISSQN-------IYSRLQDLVIDLSMNPIFQNIDIQKTIQQLNLS 142

Query: 139 TF-LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              +  N ++ +               L +I   + L +F  DG      L+        
Sbjct: 143 YVDILQNILNSVSNSLGSVLSALFSTILILIMTPVFLIYFLLDGNKFLPMLERTVLKHDK 202

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                + + +   +     G+ I A+  G +    Y + G+   +   + + I  +IP  
Sbjct: 203 LNLTSLLKNLNATVARYISGIAIDAVIIGCLAYVGYSVIGLKYALVFAIFSGIANLIPYV 262

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P       I   +  +        ++  I   +    L P +VGG +K+  +     L+
Sbjct: 263 GPSIGLIPMIIANVFTDPQRMLIAVVYMLIIQQVDGNILYPRIVGGVMKVHPITILVLLL 322

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                 G++G+ +     +++  I K      + +KE     
Sbjct: 323 LSSNIYGVIGMVVAVPSYSILKEITKFFAKLYENHKEAKEQE 364


>gi|160937037|ref|ZP_02084400.1| hypothetical protein CLOBOL_01926 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439938|gb|EDP17686.1| hypothetical protein CLOBOL_01926 [Clostridium bolteae ATCC
           BAA-613]
          Length = 397

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 50/327 (15%), Positives = 104/327 (31%), Gaps = 8/327 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFI---SKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            +  F      A I+      I                   V+  + V     + +  + 
Sbjct: 41  IVWPFILGAAIAFILNVPMRNIERHLTVFGQGSRLRRPVSLVVTILLVTGGLFLVIFVVA 100

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              +     L S + +           L          E   +   + Q +      FLK
Sbjct: 101 PQLVKTFMNLQSSIPVFFAGVRDEAERLFA--SNPQILEYMNQMEVNWQEVFQNMVAFLK 158

Query: 143 TNGIDFIPRF---ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
           +     +      A         + +  IF I  L      G  I + L++         
Sbjct: 159 SGAGTMLNTTFSAAVSIVSGVSSFLIGFIFAIYILLQKETLGRQIKKVLEAFLPEPAVGR 218

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
              I+ +  +       G    A+  G +      +  +P  + +GV+ A  A+IP    
Sbjct: 219 ILDITALTERTFSHFLTGQCAEAVILGTMFFVVLTVIRLPYALLIGVLIAFTALIPIFGA 278

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
               AV ++L++  N  +A    +   +   I    + P++VG  + LP +     +  G
Sbjct: 279 FVGLAVGVFLMLLVNPMDALIFTITFFVLQQIEGNLIYPYVVGNSVGLPSIWVLVAVTVG 338

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESI 346
              MG++G+ I   L +++  + ++ +
Sbjct: 339 GSMMGIVGMLIFIPLCSVLYALLRDGV 365


>gi|331092554|ref|ZP_08341375.1| hypothetical protein HMPREF9477_02018 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330400666|gb|EGG80272.1| hypothetical protein HMPREF9477_02018 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 383

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 57/336 (16%), Positives = 109/336 (32%), Gaps = 14/336 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESST---------FLAVIATVSVMCLFIVPLLFL 81
             P L    I F           K   + T             I+ V  +      +  +
Sbjct: 42  ILPFLIGAAIAFVLNVPMHFIEEKVFGNKTAKSSKFLQKIARPISLVMTLLFVFGIVCLV 101

Query: 82  FYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
            +    E+   ++ +    Q  IP V +W  DI         W ++L       I     
Sbjct: 102 VFIVAPELANTIAGLGKTIQTFIPEVQKWAEDIFHNNKEILSWIQNLEFNWDKMIAGGID 161

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
              +G   +           +    +     I   +       ++ Q+  LG    P  W
Sbjct: 162 FFKSGAGSVLDSTFAVAKSIVSGMTTFAIAFIFACYILLQKEKLNVQVKKLGYAFIPRDW 221

Query: 201 KKISRIVPKVIRSTF----LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
            +I   +  +   TF     G  + AI  G +   A  +  +P  + +GV+ A  A+IP 
Sbjct: 222 VEILIAISSMAYKTFSNFLTGQCVEAIILGSMFFVAMTIFNMPYALLVGVLIAFTALIPI 281

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
                  A+   L++  N   A    +   +   I    + P +VG  + LP +     +
Sbjct: 282 FGAFIGCAIGAILILMVNPVQALGFLVLFFVLQQIEGNLIYPHVVGNSVGLPSIWVLVAV 341

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             G   MG++G+ +   + +++  + K  +    E 
Sbjct: 342 SVGGSLMGIVGMLVFIPISSVVYTLLKGIVNRRLER 377


>gi|296110438|ref|YP_003620819.1| transport protein [Leuconostoc kimchii IMSNU 11154]
 gi|295831969|gb|ADG39850.1| transport protein [Leuconostoc kimchii IMSNU 11154]
          Length = 388

 Score = 83.3 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/325 (13%), Positives = 101/325 (31%), Gaps = 7/325 (2%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
           AP+L A ++ +   P                  +  + ++      +  +      ++  
Sbjct: 56  APILIAGVLYYLLSPAVKFISKYTRLPRNLSIGLILILLLAAAGGIITLVVLVLRSQVVT 115

Query: 92  LV-SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            + +     +     +               L   +    Q++   S  +L +       
Sbjct: 116 FIDNWPGYWHTSQRFINETFKSSQFAPVREFLNNTNTDINQNMIDWSRKYLTSGVAGI-- 173

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              S F        ++ +     L++   DG   S  +            +++   + K 
Sbjct: 174 ---SSFASTLTTVGITAVATPFILYYMLLDGHKFSGFIAEKFPPKAKHSLQELLSDISKQ 230

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
           I     G   +A    ++    + + G+P  + L ++     MIP  G+ I+   V    
Sbjct: 231 IAQYIRGQLGVAFAVTIMFSIGFTIIGLPYGILLALMAGFFNMIPYVGSIIAQVPVWTVA 290

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           LI G         +  AIE  I    + P ++G  + +  +     L+      G+LG+ 
Sbjct: 291 LIAGGPKLLLLAIIVLAIEQPIEGHVIAPKILGEALSIHPVTVIVVLLSSGHIFGVLGVI 350

Query: 330 IGPVLMALIAVIWKESIMAIKENKE 354
           +     A+  VI        + N +
Sbjct: 351 LAVPTYAVAKVIVTRLFTWWRANSD 375


>gi|295397406|ref|ZP_06807494.1| permease [Aerococcus viridans ATCC 11563]
 gi|294974353|gb|EFG50092.1| permease [Aerococcus viridans ATCC 11563]
          Length = 371

 Score = 83.3 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 48/330 (14%), Positives = 116/330 (35%), Gaps = 6/330 (1%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P++ A  + +   PI      +         +++ + V+    + LL +    + +  
Sbjct: 45  LLPLIVAGFLYYMFDPIVVFLEERGGVPRVIGFLLSFIVVVFAGALILLNVVPEMVEQTT 104

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           EL   + +  +      RWL+++       E    +L    +   LS   L   G+    
Sbjct: 105 ELTQNLPIYAEET---GRWLNEL---SNKEEFKNLNLVEQLNSANLSINNLIRVGVINAT 158

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              S      +++ + +  +   L F ++DG S    +            ++  R + + 
Sbjct: 159 TGLSLIVGFAMNFLVLLFTVPFILVFMFKDGHSFLDAVSKFFPLTIRKELRQTVRELNET 218

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + +      + A   G++   A  +   P  + L +   +  +IP   P      ++ + 
Sbjct: 219 LSAYISSTVLDAFIVGILSFLAMMIFKQPYGLLLAIFCGVANIIPYVGPFIGAVPAVIVG 278

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +  +   A  + L   +   +    ++P L G  + +  L     L+G     G+LG+ I
Sbjct: 279 LFISPLQALYMGLSILVIQQLDGNLIKPLLFGKSMNIHPLTIILLLIGAGSIAGILGMLI 338

Query: 331 GPVLMALIAVIWKESIMAIKENKEKISSNF 360
              + A+I  +        +  K++    +
Sbjct: 339 CIPVYAVIKTLIINIHKIYQIQKKRNLQEY 368


>gi|290968827|ref|ZP_06560364.1| putative membrane protein [Megasphaera genomosp. type_1 str. 28L]
 gi|290781123|gb|EFD93714.1| putative membrane protein [Megasphaera genomosp. type_1 str. 28L]
          Length = 359

 Score = 83.3 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 52/342 (15%), Positives = 122/342 (35%), Gaps = 14/342 (4%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS------KKEESS 59
            + Q  +R  ++ + ++    +   + P++ +LI  F   PI            K     
Sbjct: 5   KDTQFWLRTALVILAVLLFISIHAVYWPLVVSLIFTFILIPIRDGLRYLVYGICKCRLPE 64

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
                 + V ++ +       +    + ++  L +           +   L +    ++ 
Sbjct: 65  NLAIGFSFVILILILACVANVILRPLLYQLNLLAANFNTIVLQMSVLVNHLENDQTHVYI 124

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            E   + ++              TN +  +   A           +    +    F+F +
Sbjct: 125 PEQVKQLINEALVKAGNYGVDSITNVVKSVVVIAGT--------VVEFCVVPFITFYFMK 176

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  + Q   S+    +    + I+  + +V+     G  I++     V+    W+ GVP
Sbjct: 177 DGAHLVQSFISIFPPTYRPRLEGIAGEIHRVLSRYIRGQIILSCIIAGVIFCGMWIMGVP 236

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             + +G++ AI   IP   PI     +I L    +   A  + ++  I   +    + P 
Sbjct: 237 YPMVIGLLAAITEWIPIVGPIVGAVPAILLGATVSGSLALKVLIFYVIVQQMDSHVIMPQ 296

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++G  I+L  +     L+ G   MG+ G+ +   + A++ ++
Sbjct: 297 VMGAVIRLHPVVIIISLLIGGTLMGVAGMILTVPITAVLQIL 338


>gi|261409447|ref|YP_003245688.1| hypothetical protein GYMC10_5674 [Paenibacillus sp. Y412MC10]
 gi|261285910|gb|ACX67881.1| protein of unknown function UPF0118 [Paenibacillus sp. Y412MC10]
          Length = 359

 Score = 83.3 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/305 (12%), Positives = 105/305 (34%), Gaps = 9/305 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           ++ FI    L F      P++ +    +   P+      +K   S        ++++ L+
Sbjct: 26  LVDFIFRPVLSFFSIILVPLMLSGFFYYLLRPLVDLLEKRKLNRS--------LAILLLY 77

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +V    L  + +     L  ++V   Q+   +   L +    +  +  +        +  
Sbjct: 78  VVFAGILTGFILGVWPSLRDQIVALVQNAPALFAKLGEQLQELENNGFFQDIFPENANPL 137

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                +L   G  F+  +         ++ + +    I L++  ++G    + + S    
Sbjct: 138 TQLTDYL-NQGFTFLTNYIMNLFSFVSNFAIVLFTFPILLYYMLKEGGKFGKMVVSFLPD 196

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F      +   +   ++   +G  ++ +  G+++   + + G+P  + L V+  I   I
Sbjct: 197 RFKGEGASVLDEINNALKGFIVGRVLVNLALGVLMYIGFLIIGLPYALLLTVVAVIANFI 256

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I      + +    +   A    +       I D  + P++ G  + +  +    
Sbjct: 257 PFIGAILSAIPIVIIGFIQSPGTAIWSLVVILAAQQIQDNLIGPYIFGKQLAIHPITIII 316

Query: 315 GLVGG 319
            ++ G
Sbjct: 317 LVLVG 321


>gi|269101993|ref|ZP_06154690.1| permease PerM [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268161891|gb|EEZ40387.1| permease PerM [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 359

 Score = 83.3 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 56/339 (16%), Positives = 119/339 (35%), Gaps = 14/339 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +   MI+    +++YF     AP+L A+++ +   WP+    +++     T    +
Sbjct: 15  DPHAVSLVMILLGGFLTIYFFGHLIAPLLVAIVLAYLLEWPVMR--LNRLGMPRTIAVAV 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V    L ++ +  L      ++  L++ V            ++S +P           
Sbjct: 73  VLVLFAGLMVMAIFGLVPTIWHQVSNLLADVPNMFNG---FQNYISSLP-----ERYPEF 124

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
              H   + + +         + + + +    +      + +I + + +FF  +D   + 
Sbjct: 125 VQPHQVGMFMDTLKGKVLGLGESVVKGSLSSLVSLATLGVYLILVPLLVFFLLKDKEEML 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L  L          K+   + + I +   G        G+V    + L G+   V LG
Sbjct: 185 NMLRGLLPK-NRRLASKVGVEMNEQISNYIRGKVTEIFIVGIVSYITFVLLGLQYAVLLG 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V+  +  +IP  GA      V++  L + G       L +   I   +    L P L   
Sbjct: 244 VLVGLSVLIPYIGAAAVTVPVAMVALFQWGLTPEFWWLLVAYGIIQALDGNVLVPILFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            + L  +     ++      G  G+F    L  L+  +W
Sbjct: 304 AVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVW 342


>gi|50955276|ref|YP_062564.1| integral membrane protein [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951758|gb|AAT89459.1| integral membrane protein [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 413

 Score = 83.3 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 51/319 (15%), Positives = 119/319 (37%), Gaps = 14/319 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L+    PVL A+++G    P     I  +        +   ++++ +    L    +   
Sbjct: 74  LRLIVIPVLIAVLLGALLVPFKELLIRHRWP-VWLAILTTLLTLIVVVGGLLSLAIWQVT 132

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            +  +L ++ V A         WL+  P G+  +++ +   +   S++  S+ F+     
Sbjct: 133 RQSHDLQTQSVAAYDG---FRAWLTTGPLGLSEAQIASGLDTLWTSIQQDSQVFVSG--- 186

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
                 A   G         ++  + ++ F   DG  I   +  +             R 
Sbjct: 187 ------ALSLGSTLGHVLAGVLLTLFSVLFILIDGKGIWAWIVRVFPRSARGAIDNAGRA 240

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
               +R+      ++A  + L +G   +  G+P  + + V+  + + IP    +   A++
Sbjct: 241 GWTTLRNFVKVQILVASIDALGIGLGAFFLGLPLVIPIAVLVFLGSFIPIVGAVVTGALA 300

Query: 267 IYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +++ L+      A  +     +   I    L+P ++G  +K+  L     + GG    G+
Sbjct: 301 VFVALVFKGWVFAVIMLAVVLLVQQIEGHVLQPLIMGTAVKVHPLAVVLAVAGGSLLAGI 360

Query: 326 LGLFIGPVLMALIAVIWKE 344
            G      L+A++ V+  +
Sbjct: 361 PGALFAVPLVAVLNVMVND 379


>gi|154252605|ref|YP_001413429.1| hypothetical protein Plav_2158 [Parvibaculum lavamentivorans DS-1]
 gi|154156555|gb|ABS63772.1| protein of unknown function UPF0118 [Parvibaculum lavamentivorans
           DS-1]
          Length = 387

 Score = 83.3 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 52/353 (14%), Positives = 129/353 (36%), Gaps = 34/353 (9%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++  +  +  + +  IL + Y  +   AP+ +A++  F   P+  +   +    +  
Sbjct: 31  RARIMRAETALAILAVLAILYTAYLAQNLVAPITAAVVGSFIFMPLMRAAPLRFLPDALS 90

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            ++I    +  L          Y + E                P   W + IP  +   E
Sbjct: 91  ASIIVATLIGAL------AGSVYLLAE----------------PAAEWTARIPAAIEEFE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIP---------RFASRFGMIFLDYCLSIIFMII 172
             ++ LS P +    +   ++                    ++   +      SI+  I+
Sbjct: 129 EKSRELSEPMAAMRRASKQVEEMTRADDAPREVVVRDEGLVAQAMEVAGQKGASILIFIV 188

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFP-AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
            L+F    G  +  ++    + L      ++I R + + I +    +++I  G G+ +G 
Sbjct: 189 LLYFLLATGELLRDRIIRSAKRLTDKERARRILRSIEREISTYLFSISLINAGLGVAIGL 248

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK--GNIFNATCLFLWGAIEL 289
           + W  G+P+ +  G   A++  IP    ++  A++ ++      ++ +A        +  
Sbjct: 249 SMWAIGLPNALLWGFAAALLNFIPYAGALAGMALTGFVAFMTFDSVGHALLAPAAYFLCN 308

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            I  + + P ++G    L     F  +V      G++G  +   ++ ++   +
Sbjct: 309 LIESQFVTPSVLGRRHTLNAAVVFISIVFWGWMWGVIGAVLAVPILVILNTCF 361


>gi|331677559|ref|ZP_08378234.1| putative permease [Escherichia coli H591]
 gi|331074019|gb|EGI45339.1| putative permease [Escherichia coli H591]
          Length = 181

 Score = 83.3 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 55/157 (35%), Gaps = 2/157 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +
Sbjct: 18  LFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMV 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQS 132
           FI+P+  L    +     L+ K + +    +P   WL+ IP  G      W   L    +
Sbjct: 78  FIIPIALLVNSIVDGSGPLI-KAISSGDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGT 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
             +            +    A+  G   +   L ++ 
Sbjct: 137 AIMAKVRPYIGTTTTWFVGQAAHIGRFMVHCALMLLL 173


>gi|83954041|ref|ZP_00962761.1| membrane protein [Sulfitobacter sp. NAS-14.1]
 gi|83841078|gb|EAP80248.1| membrane protein [Sulfitobacter sp. NAS-14.1]
          Length = 359

 Score = 83.3 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 116/340 (34%), Gaps = 18/340 (5%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            I LV L+F      P L    I +   P+     +    S     ++ T+  + +F++ 
Sbjct: 17  AIFLVFLWFTGNVLLPFLIGAAIAYFLDPVADRLEA-MGLSRAMATMVITLVALLIFVLM 75

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
            L +    + +   L        ++               + +E +   L    +L+   
Sbjct: 76  ALLVIPTLINQAVNLFEVAPELTRNFT------------NFLTERFPALLDEGSTLRSSI 123

Query: 138 ETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +   T       +   A       L+  +  + + +   +   D   +  Q+D L    
Sbjct: 124 NSIGSTIQERGGEVLNTAISSAASLLNVMVLFVIVPVVAVYLLLDWDRMVAQIDRLLPRD 183

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                ++++R + + +     GM  + +  G     A  L G+   + +G I  ++  IP
Sbjct: 184 HAPVIRRLARDIDRTLAGFIRGMGTVCLILGAYYAIALMLVGLQFGLVVGFIAGLVTFIP 243

Query: 256 GGAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
               +   A++I L +    G+ F+   +     +   I    L P LVG  + L  +  
Sbjct: 244 YLGAVLGGALAIGLALFQFWGDWFSIGMVAGIFVLGQMIEGNFLTPKLVGNSVGLHPVWL 303

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              L       G +G+     + A + VI + +     E+
Sbjct: 304 ILALSVFGSLFGFVGMLAAVPIAAALGVIARFATEQYVES 343


>gi|256003588|ref|ZP_05428577.1| protein of unknown function UPF0118 [Clostridium thermocellum DSM
           2360]
 gi|255992379|gb|EEU02472.1| protein of unknown function UPF0118 [Clostridium thermocellum DSM
           2360]
 gi|316939792|gb|ADU73826.1| protein of unknown function UPF0118 [Clostridium thermocellum DSM
           1313]
          Length = 349

 Score = 83.0 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 59/321 (18%), Positives = 122/321 (38%), Gaps = 9/321 (2%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             PVL   +I +   PI     SK   S T   ++  +    L    ++F+    +   +
Sbjct: 35  IFPVLLGAVIAYILRPIVLKLESK-NISRTKSIIMIYLVFGILLTTAVIFIAPIFVDNTR 93

Query: 91  ELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           E ++ V  +  ++G    + L  I    W++E+     +   +   ++E  L       +
Sbjct: 94  EFINTVPEITTEYGEKFNKILKMIDTSGWSAEVKNAIYNEINNGVNIAENMLMDALRKTL 153

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                    I      +II  +I  ++  +D     +   SL    +        R + +
Sbjct: 154 VWLFKSLTGIS-----NIILGMIIAYYIMKDAEFFKKGALSLVPRRWRNEIIGTCREINE 208

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
           ++     G  + A+  G++   A  + GV     LG I  I  +IP   P      S+ +
Sbjct: 209 ILSCFIQGQLLTALIIGIMETVALAIIGVKYSPILGFIGGISNIIPYFGPFIGAIPSVAV 268

Query: 270 LIKGNIFNATCLFLWGAIELFIVDK-TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
            +  +   A    +   + +  +D   + P ++ G + L  + T   ++ G    G++G+
Sbjct: 269 ALIDSPVKA-FWTVVAFLVIQQIDNAFISPKIIEGRLGLHPITTILAVLAGGEFFGIIGM 327

Query: 329 FIGPVLMALIAVIWKESIMAI 349
            +   + A++ VI K  I AI
Sbjct: 328 LVAVPVTAVLKVILKRLIEAI 348


>gi|325479702|gb|EGC82792.1| putative membrane protein [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 402

 Score = 83.0 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 46/343 (13%), Positives = 110/343 (32%), Gaps = 16/343 (4%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES------STFLAVIATVSVMCLFIVP 77
           L   + F    + A I+                ++            I+ + ++C+ ++ 
Sbjct: 39  LLVFQPFIIGAMIAYIVSIPMNYFERKLSENFPDAKHKKKIRGLSLFISWIIILCVVVLF 98

Query: 78  LLFLFYYGMLEMKELVS-KVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
           L  L    +  +    +       +    + ++    P      E           L+  
Sbjct: 99  LNILVPRIITVIISFFNRWPEFVRETYEALNKYDLTKPFADKFYEYVNSF--SWFELRNR 156

Query: 137 SETFLKTNGIDFIP---RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI--SQQLDSL 191
              FL  N  + +       +  G   ++     +F I  L   Y+D   +  ++ + +L
Sbjct: 157 VLDFLSGNKSNILSVTTNVINSVGSSLVNIFTIFVFSIFVL--IYKDMLKVNGTKIMYAL 214

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                  Y  K+  +     +       I  +    +     ++  +P+   + +   + 
Sbjct: 215 LSEKKADYLNKVFSLSYHTFKDYIFSRLIAVVTLSTLTFIGMFIMRMPNAGVISIFIGVS 274

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP   PI    +S  ++   +   A    ++  I   I +  + P + G  I LP + 
Sbjct: 275 DLIPIFGPIVGAGLSAVIIFLESPVKALIFLIYDVIVQQIQENIIYPAIAGEKIGLPAVW 334

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
               +  G    G+ G+ +   + ++I  ++ E I    E K 
Sbjct: 335 VLASITIGGSLFGIWGMLVSIPVASIIYTLFHEYIDNRLEKKN 377


>gi|288929635|ref|ZP_06423479.1| membrane protein [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329140|gb|EFC67727.1| membrane protein [Prevotella sp. oral taxon 317 str. F0108]
          Length = 371

 Score = 83.0 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 49/373 (13%), Positives = 136/373 (36%), Gaps = 23/373 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFL----KGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M E  +    ++RW++  +I+ +++F+         P   A ++ +  +P+         
Sbjct: 1   MLEEKITLDKLIRWVVCGLIIFAVFFITNSMSEVLLPFFVACLLAYLLYPLVKFTEKYLH 60

Query: 57  ES-STFLAVIATVSVMCLFIVPLLFLFYYGMLE---MKELVSKVVLANQHGIPVPRWLSD 112
               T   +   + ++ L     L +    + +   + EL ++ + +++    +  ++  
Sbjct: 61  IRIRTLSILFVLLVLVGLITGVGLLVVPSLIDQFDKISELAARYLGSSKSSGDLSGYIQH 120

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
                W  E         +S             +  +    +   +  +  C+++++M  
Sbjct: 121 -----WLREHQEDIDRLIRSKDFNDAVRTAMPKLFSLLGQTASVVVSIVASCITLLYM-- 173

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
             FF   D   ++     +    +  +W ++++   + + +   G  ++++  G++    
Sbjct: 174 --FFILLDYEFLTDNWVRIFPKKYRPFWNELAQDASRELNNYIRGQGLVSLIMGIMFCIG 231

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI----KGNIFNATC--LFLWGA 286
           + +   P  + +G++  +M ++P     +    +   L+     G  F        L  A
Sbjct: 232 FTIIDFPMAIGMGILIGVMNLVPYLHTFALIPTAFLALLKAADTGQNFWIIFGTAILVFA 291

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           +   I D  + P ++G  + L        L      +G +G+ I   L  LI   W+  +
Sbjct: 292 VVQIISDMVVTPRVMGKAMGLNPAIILLSLSVWGSLLGFIGVIIALPLTTLIIAYWQRYV 351

Query: 347 MAIKENKEKISSN 359
              K + E  ++ 
Sbjct: 352 TKEKVDVEPETTE 364


>gi|254228422|ref|ZP_04921848.1| domain of unknown function, putative [Vibrio sp. Ex25]
 gi|262393563|ref|YP_003285417.1| permease PerM [Vibrio sp. Ex25]
 gi|151939010|gb|EDN57842.1| domain of unknown function, putative [Vibrio sp. Ex25]
 gi|262337157|gb|ACY50952.1| permease PerM [Vibrio sp. Ex25]
          Length = 357

 Score = 83.0 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 51/350 (14%), Positives = 115/350 (32%), Gaps = 14/350 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +    I+    +++YF     AP+L A+++ +   WP+      +     T   +I
Sbjct: 15  DPHAVSLVAILLFGFITIYFFGHLIAPLLVAIVLAYLLEWPVVKMC--RMGVPRTLSVII 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + L ++ L  L      ++  L++ +             L      +        
Sbjct: 73  VILMFVGLMLIALFGLVPTIWTQVGNLINDIPNMYNG-------LQKFIVTLPERHPELA 125

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +L   +++   ++      G   +    +    I     + +I + + +FF  +D   + 
Sbjct: 126 NLEIVETVVTNAKNQALGLGESVVKGSLASLVSIAT-LAVYLILVPLLIFFLLKDKEEML 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +          K+   + + I +   G  +  +  G V    + +  +     L 
Sbjct: 185 RIASGVLPK-NRKLANKVWHEMNEQISNYIRGKVLEILIVGGVSYVTFAILDLRYSALLA 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATC-LFLWGAIELFIVDKTLRPFLVGG 303
           V   +  +IP  GA      V+I  L +  +      L L   I   +    L P L   
Sbjct: 244 VAVGLSVLIPYIGAAAVTVPVAIVGLFQWGLAPPFYWLLLAYGIIQALDGNVLVPVLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            + L  +     ++      G  G+F    L  L+  +W       +   
Sbjct: 304 AVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWHALPSTEENEP 353


>gi|194471851|ref|ZP_03077835.1| permease PerM [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194734852|ref|YP_002115559.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197263083|ref|ZP_03163157.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197301037|ref|ZP_02663257.2| permease PerM [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|198245669|ref|YP_002216562.1| permease PerM [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|204929513|ref|ZP_03220587.1| permease PerM [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205357726|ref|ZP_02572897.2| permease PerM [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205358514|ref|ZP_02657100.2| permease PerM [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|205359481|ref|ZP_02829754.2| permease PerM [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194458215|gb|EDX47054.1| permease PerM [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194710354|gb|ACF89575.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197241338|gb|EDY23958.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197288904|gb|EDY28277.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197940185|gb|ACH77518.1| permease PerM [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|204321232|gb|EDZ06432.1| permease PerM [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205329915|gb|EDZ16679.1| permease PerM [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205333537|gb|EDZ20301.1| permease PerM [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|205344763|gb|EDZ31527.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|261247691|emb|CBG25518.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
          Length = 362

 Score = 83.0 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 52/347 (14%), Positives = 115/347 (33%), Gaps = 14/347 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +P+ I   +I+      L+F  G  AP+L A+++ +   WP  +   +       
Sbjct: 17  RRRFSDPEAIALLVILVAGFSILFFFSGLLAPLLVAIVLAYLLEWP-TARLQAIGCSRRW 75

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             +++  + V  L ++  + +       +  +     + N+            P  M A 
Sbjct: 76  AASIVLILFVGILLLMAFVVMPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 135

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +     +    +  + ++ +K +    +           L   + ++ + + +FF  +D
Sbjct: 136 IIDAMAENMRTRMLNMGDSVVKYSLASLV---------GLLTLAVYLVLVPLMVFFLVKD 186

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +          ++   + + I +   G  +  +  G+     + L G+  
Sbjct: 187 KEQMLNAVRRVLPRNRGLAG-QVWNEMNQQITNYIRGKVLEMVVVGVATWLGFLLFGLNY 245

Query: 241 HVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V+     +IP  GA +    V  + L   G        F    I   +    L P
Sbjct: 246 SLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGLGTEFWSCFAVYLIIQALDGNLLVP 305

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L    + L  L     +V      G  G+F    L  LI  +    
Sbjct: 306 VLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVHAW 352


>gi|329922576|ref|ZP_08278151.1| putative membrane protein [Paenibacillus sp. HGF5]
 gi|328942120|gb|EGG38402.1| putative membrane protein [Paenibacillus sp. HGF5]
          Length = 359

 Score = 83.0 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/305 (12%), Positives = 106/305 (34%), Gaps = 9/305 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           ++ FI    L F      P++ +    +   P+      +K   S        ++++ L+
Sbjct: 26  LVDFIFRPVLSFFSIILVPLMLSGFFYYLLRPLVDLLEKRKLNRS--------LAILLLY 77

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +V    L  + +     L  ++V   Q+   +   L +    +  +  +        +  
Sbjct: 78  VVFAGILTGFILGVWPSLRDQIVALVQNAPALFAKLGEQLQELENNGFFQDIFPENANPL 137

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                +L   G  F+  +         ++ + +    I L++  ++G    + + S    
Sbjct: 138 TQLTDYL-NQGFTFLTNYIMNLFSFVSNFAIVLFTFPILLYYMLKEGGKFGKMVVSFLPD 196

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F      +   +   ++   +G  ++ +  G+++   + + G+P  + L V+  I   I
Sbjct: 197 RFKGEGASVLDEINNALKGFIVGRVLVNLALGVLMYIGFLIIGLPYALLLTVVAVIANFI 256

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I  +   + +    +   A    +       I D  + P++ G  + +  +    
Sbjct: 257 PFIGAILSSIPIVIIGFIQSPGTAIWSLVVILAAQQIQDNLIGPYIFGKQLAIHPITIII 316

Query: 315 GLVGG 319
            ++ G
Sbjct: 317 LVLVG 321


>gi|296332096|ref|ZP_06874560.1| putative permease [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305675509|ref|YP_003867181.1| putative permease [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296150867|gb|EFG91752.1| putative permease [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305413753|gb|ADM38872.1| putative permease [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 371

 Score = 83.0 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 56/333 (16%), Positives = 109/333 (32%), Gaps = 14/333 (4%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST-----------FLAVIATVS 69
           + + Y+      P L ALI+     P+            T             A      
Sbjct: 23  IAAAYYSFPLTYPFLIALILSSVIHPLVDYLDKVTGFPRTINVLGVLAFFLLAAFGVLTI 82

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++   +    +L       +   +S         I        +      +      ++H
Sbjct: 83  LVAEIVTGTAYLAKTLPPHISTFISYCEKLFTTHIQPLYNELSLLFQELETNQQASIVTH 142

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            Q+L   +        +  I     RF  +  +    +IF ++A FF  +D   +   L 
Sbjct: 143 IQTLGDSAAKNAG-LLLSHILEMIPRFFALLPNTAAVLIFSLLATFFMTKDWHKLKAMLV 201

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           S+      A  K IS  + K +        ++     +++     L  V     +  +  
Sbjct: 202 SILPGRVTANSKAISSELKKAMTGFIKAQAVLVFITMVIVFIGLSLLKVEHAATIAFLIG 261

Query: 250 IMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++ ++P  GA   F    +YL I G +  A  + +   + + I  +   P ++   I + 
Sbjct: 262 LVDLLPYLGAGSVFVPWILYLSITGQLPQAIGIGVLY-LVVLIQRQLTEPKILSKSIGID 320

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L T   L  G +  G LGL  GP ++ +I   
Sbjct: 321 PLATLIALFAGFKLFGFLGLIAGPAVLVIIQAF 353


>gi|254501255|ref|ZP_05113406.1| conserved domain protein, putative [Labrenzia alexandrii DFL-11]
 gi|222437326|gb|EEE44005.1| conserved domain protein, putative [Labrenzia alexandrii DFL-11]
          Length = 371

 Score = 83.0 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 54/344 (15%), Positives = 112/344 (32%), Gaps = 16/344 (4%)

Query: 5   MLNPQGIMRWMI-MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           M   + I  W+I +F     LY   G   P ++   + +   P+               A
Sbjct: 1   MTLRRQIQFWLISLFAFCAFLYVFSGVLLPFVAGAAVAYLLDPVCDRLEKLGMGR--LWA 58

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
               +         +  L  + +L +  L +++    +    + R L  +        L 
Sbjct: 59  TFTILLAF------VFLLILFFILLLPVLGNQLASFLERFPELVRQLQGLVNDQMGQRLA 112

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRD 180
                +   L+      +   G  F+ + A      G   L      +   +  F+   D
Sbjct: 113 EAAGINLADLQASMAEMVG-QGAAFVGKLAQSVWSGGQALLSILSLFVITPVVAFYLLLD 171

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +  ++D           + ++R +   +     G   + +  G     A  +AG+  
Sbjct: 172 WDHMIAKIDGWLPRDHLEEIRGLAREMDGAVAGFVRGQLSVCLLLGAFYAIALAVAGLNF 231

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLR 297
            + +G+   +++ IP  GA + F       +++        L +     +  F+    L+
Sbjct: 232 GLLIGMGAGLVSFIPFVGAGLGFIVSMGVGVVQFWPEWPMILVIGAVFAVGQFLEGNILQ 291

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           P LVG    L  +   F L       G +G+ I     A+I V+
Sbjct: 292 PKLVGNSTGLHPVTLMFALFAFGYLFGFVGMLIAVPAAAMIGVL 335


>gi|256959836|ref|ZP_05564007.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256950332|gb|EEU66964.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
          Length = 381

 Score = 83.0 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 53/334 (15%), Positives = 112/334 (33%), Gaps = 7/334 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F    FAPVL A  + +   P+ +  + K +    +  ++  + ++   ++ LL +    
Sbjct: 40  FFSTLFAPVLVAGFLYYLLNPVVN-LLMKTKMKRIYAVLLVFLLLIIALVLILLTIIPKL 98

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++  L S +    +        ++++P            L+       +S   +    
Sbjct: 99  ADQLASLASSMPDFFKQVETWIYEIAELPIFKQID------LTSYIEKMDISYANIIQQF 152

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +               + ++     LF+  +DG  +   +              +  
Sbjct: 153 LSSLSSSLGSIVSTVASTTIVLVTAPFILFYMLKDGDKLVPAVQRFLPEKRKDDIVDLLG 212

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + + + S   G  I  +  G      Y L GV      GVI     +IP   P    A 
Sbjct: 213 QLNQTLSSYISGQAIECLFVGTFTIIGYSLLGVRYAFLFGVIAGFTNLIPYLGPYLGLAP 272

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + I      A    L   +   +    + P ++G  +K+  L     L+      GL
Sbjct: 273 AVLVTIFNEPVKAALCCLVVLVVQQLDGNIIYPNVIGKSLKIHPLTIILILLVAGNLAGL 332

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           LG+F+G    A+        I  +K  + +  +N
Sbjct: 333 LGIFLGVPFYAICRTTIYYVIDMVKAGRSEKVTN 366


>gi|325108129|ref|YP_004269197.1| hypothetical protein Plabr_1564 [Planctomyces brasiliensis DSM
           5305]
 gi|324968397|gb|ADY59175.1| protein of unknown function UPF0118 [Planctomyces brasiliensis DSM
           5305]
          Length = 372

 Score = 83.0 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 62/348 (17%), Positives = 124/348 (35%), Gaps = 16/348 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           + ++F  L    +L+    PVL    + +   P    F  +          I  V ++ +
Sbjct: 26  FGLIFAFLWCCIYLRDVLLPVLVGFGLAYALDPALELFNRRWNVPRYVSLAILYVLIVLV 85

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +    FL    + E ++   K+   +Q       ++S  P G    +          SL
Sbjct: 86  VVGVGFFLGPIFVEEAEQFAEKL--PDQIDQLKQTFVSSEPLGGTLQKAKESLEQSKGSL 143

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
              +   L  +G  ++ R     G +       ++ + I LF+F          L S   
Sbjct: 144 ASSATQKLG-DGFGWLARVVGVTGYVLF----CLLTIPIFLFYFGWQFAETKDLLKSFIP 198

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
             +      +   + KV+     G  I ++ + +   + + L GVP  + LG +T I+  
Sbjct: 199 SRYRESTLDMLSKMDKVVGQYIRGRIICSLFQIVFYSAGWALVGVPYALVLGTVTGILGT 258

Query: 254 IPGGAPISFTAVSIYLLI---KGNIFNATCL--FLWGAIELFIV----DKTLRPFLVGGP 304
           IP  A + +    +   +   +G    +  L  F W ++  F V    +  L P++    
Sbjct: 259 IPWAAGLGWPVAMLLAYLDIVQGGGGESVLLWAFFWPSVVYFTVQILENYVLEPWIQSSQ 318

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             L  +     ++ G    G  GL +   +     ++++E I    EN
Sbjct: 319 TSLGPITIIVAILIGGSVAGFFGLLLAVPIAGSGKILFQEVIFPRLEN 366


>gi|186474126|ref|YP_001861468.1| hypothetical protein Bphy_5344 [Burkholderia phymatum STM815]
 gi|184196458|gb|ACC74422.1| protein of unknown function UPF0118 [Burkholderia phymatum STM815]
          Length = 647

 Score = 83.0 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 52/337 (15%), Positives = 108/337 (32%), Gaps = 18/337 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES------STFLA 63
           G+   +   +++  LYF +    P+  A+++ F   P+                 +   A
Sbjct: 40  GLTSVITFVVVVCGLYFAREVLIPITLAVLLSFLLAPLVGLLRRLHFGQLPSIFVAVLTA 99

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL---SDIPGGMWAS 120
           V+A ++V  L    +  L          +  KV    +  +     L   +       A 
Sbjct: 100 VVALLAVSTLIGAQVAQLAGSLPQYQAAIERKVETVQEKTVGRADALLSRAATALARVAP 159

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIP---RFASRFGMIFLDYCLSIIFMIIALFFF 177
           E         +S K      L     + IP   + A R     +    ++  +++   F 
Sbjct: 160 ERPAPAHEAGRSQKPTVAAPLPVEVHEPIPSPLQLAQRVFSPVVGPLETMFIVLVVTIFI 219

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
                 +  +L  L                   +   F+    + +G G  +     + G
Sbjct: 220 LLQREDLRDRLIRLFGARDLHRTTTAINDAASRLSRYFVAQLGVNLGAGATIAIGLAIIG 279

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD---- 293
           VP  +  GV+TA++  +P      + A  + +++   I     + +W  +    +D    
Sbjct: 280 VPGALLFGVLTALLRFVPYIGT--WIAGLLAVILAAAIQPQWTMAVWTIVLFVSIDVVAG 337

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           + + P L G    L  L      +      G +GL +
Sbjct: 338 QVVEPLLYGHSSGLSPLAVVVAAIFWSWLWGPIGLVL 374


>gi|14520804|ref|NP_126279.1| hypothetical protein PAB1962 [Pyrococcus abyssi GE5]
 gi|5458020|emb|CAB49510.1| Putative permease [Pyrococcus abyssi GE5]
          Length = 343

 Score = 83.0 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/337 (12%), Positives = 121/337 (35%), Gaps = 28/337 (8%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           LK   +P++  +   + ++P +     K  +  + L + A +++  +     + +  +  
Sbjct: 28  LKELISPIVFGIAATYIAYPFHIKLSRKLGKKLSVLLLSALLAIFTILF--FIGVTLWIT 85

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
             ++ L + +            WL  +    + S ++                 + T+  
Sbjct: 86  DTLRNLYAYLNSFF-------SWLGSLNVPSFLSSIFDA---------------MATSFP 123

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +     ++ +      L +I  +   +    +   +++++  L         +K+   
Sbjct: 124 QKLRDILLQYTLSLPKLALQLIVFLAVFYATLSNSDFLAREIYELLPSSNRELGEKLIEK 183

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYW---LAGVPSHVALGVITAIMAMIPGGAPISFT 263
           V   + +        +I +G+ L   ++   ++ V   +A GV+  I+ ++P        
Sbjct: 184 VRDTVDAILKTWLFFSIIKGMFLTIGFYLFEISNVAGSIAAGVLCVILELLPVVGGWIMW 243

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
                +L K +   A    ++G + +  + D TL+     G   +  +    G+ GG+  
Sbjct: 244 LAGAIILWKKSTLLALLFSIYGILTISPVPDYTLKSRFTKGRASVSSVVALVGIFGGLIA 303

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            G +G+ +GP+ + L+  +         +   K   +
Sbjct: 304 FGAVGIILGPIAIGLLLALIDAWKEIKLKQPSKARHS 340


>gi|291542731|emb|CBL15841.1| Predicted permease [Ruminococcus bromii L2-63]
          Length = 439

 Score = 83.0 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 116/357 (32%), Gaps = 32/357 (8%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +  F    L A I+ +     YS    +      FLA          F  PL  +  Y 
Sbjct: 40  IITPFAIGFLFAYILNYPYKFFYSKVFGRMGRKRKFLAN---------FRKPLALIITYA 90

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIP------------GGMWASELWTKHLSHPQSL 133
           ++    +V   ++  Q    +   ++ +P               W +  ++  +   + +
Sbjct: 91  IVVAIFVVIISIVVPQIAASLFSLINSLPQYAGVLSDMTKTVVHWINHTFSMEIDASEVI 150

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLS-------IIFMIIALFFFYRDGFSISQ 186
               +          I  F            +S        +  I+   +F     ++ +
Sbjct: 151 NNFFKYITNLISAGNITSFLGNSTNAVFSAIMSTCNGVYNFLLGIVISVYFLAAKETLCR 210

Query: 187 QLDSLGEHLFPAYW----KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           Q+  L     P  +     +I  I         +G  I A   G++      +  +P   
Sbjct: 211 QIKKLAVAFIPIKYLPKIYEIVDITDTKCGRFLVGDIIDAAFLGVLTFITMSICQLPYAP 270

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            + V+  +  +IP   P      S ++L+  +        +   I   +     +P ++G
Sbjct: 271 LIAVLIGVTNIIPFFGPFIGAIPSAFILLLIDPIYMIIFIIIIVIIQQLDGNLFKPKIIG 330

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             + L      F ++ G    G+LGL +G  + A+I  +  + +    ++K +I+  
Sbjct: 331 SQVGLSSFWVLFSVIVGGGMFGVLGLILGTPIYAVIYALVGKRVKNKIDSKGRIAQE 387


>gi|302345184|ref|YP_003813537.1| hypothetical protein HMPREF0659_A5427 [Prevotella melaninogenica
           ATCC 25845]
 gi|302149106|gb|ADK95368.1| putative membrane protein [Prevotella melaninogenica ATCC 25845]
          Length = 374

 Score = 83.0 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 51/361 (14%), Positives = 122/361 (33%), Gaps = 16/361 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKE- 56
           MR+T+   + I   +I   +L   +    L     P   A +I +  +PI      K   
Sbjct: 1   MRQTITFDKFIRWALIALAVLAVGFIINALSEVLLPFFIAWLIAYLLYPIVKFVQYKLHI 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
                  +I  + V  LF    +F+    + ++ + ++ V              + I   
Sbjct: 61  PGRALSIIITFILVAALFTAIFMFIVPPMINQVDKFMTIVNRYLHETTHTNDIATMIQKW 120

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
           +  ++   +            +T +       +     +   I +    S I ++   FF
Sbjct: 121 IRENQTEIERFLKSSDFTNTIKTAMPK-----LFSVIGQTASILISIIASCITLLYT-FF 174

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
              D   ++     +       +W  ++    + + +   G  ++++  G++    + + 
Sbjct: 175 ILLDYEVLTNNWIKIFPKNVRPFWAGLAEDAERELNNYIRGQGLVSLCMGILFCIGFTII 234

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI----KGNIFNATC--LFLWGAIELF 290
             P  + +G++  I+ ++P     +    +   L+     G  F        +  A+   
Sbjct: 235 DFPMAIGMGILIGILNLVPYLHTFALIPTAFLALLKAADTGQNFWIIFASALIVFAVVQL 294

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++D  + P ++G  + L        L      +G +GL I   L  LI   W+  +    
Sbjct: 295 LMDMVITPKVMGKAMGLNPAILLLSLSVWGALLGFIGLIIALPLTTLIIAYWQRYVTKEG 354

Query: 351 E 351
           +
Sbjct: 355 D 355


>gi|89096022|ref|ZP_01168915.1| hypothetical protein B14911_25035 [Bacillus sp. NRRL B-14911]
 gi|89088876|gb|EAR67984.1| hypothetical protein B14911_25035 [Bacillus sp. NRRL B-14911]
          Length = 369

 Score = 83.0 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 57/317 (17%), Positives = 117/317 (36%), Gaps = 7/317 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F +  F P L + +I +   PI      KK        V++ + +  + I     L Y+ 
Sbjct: 36  FFETLFMPFLISGVIYYLLRPIVYFLNRKKVPK-----VVSILLIYLIVIGGTAALVYFV 90

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSD-IPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
             E++     ++      I   R  +D +    W S            +     ++ K+N
Sbjct: 91  GPELQRQFKDLMDNYPQYIEGLRNKADELQNSAWFSRFQENDYITFDYITEQMSSYFKSN 150

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
             D   R    F  I       I+ +   +F+  +D    S+ +     +   A  +KI 
Sbjct: 151 FSDLSSRLTGVF-SIVTSVVTVIVTVPFIVFYLLKDSEGASKGMVRYLPYFQAAETRKIL 209

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
           + + + + S   G  I++   G+++   Y + G+   + L ++  +  +IP   P     
Sbjct: 210 KDMDEALSSYIQGQAIVSFIVGVMMYIGYLIIGINYSLILAIVAMLTNVIPFLGPFLALV 269

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            ++ +    + F A  + L   +   I      P ++G  + +  L     L+      G
Sbjct: 270 PAVIVGFTMSPFMALKVILVVIVVQQIDGNVSSPLIMGRKLDVHPLTIILILLVAGNLAG 329

Query: 325 LLGLFIGPVLMALIAVI 341
           L+G+ +     A+I VI
Sbjct: 330 LIGMIVAVPAYAIIKVI 346


>gi|157964778|ref|YP_001499602.1| permease PerM-like protein [Rickettsia massiliae MTU5]
 gi|157844554|gb|ABV85055.1| Permease PerM-like protein [Rickettsia massiliae MTU5]
          Length = 392

 Score = 83.0 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 55/350 (15%), Positives = 118/350 (33%), Gaps = 7/350 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N   I   + +   +     +     P   A I+ +   P      SK + S+ F + I
Sbjct: 42  MNRTVIFWLVFLGFFISGFMLMSDAVKPFFIAFILSYLLQPAIGFIASKFKISNKFASSI 101

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + +F + L  L      ++   ++ +   N +          +P  M        
Sbjct: 102 IYLIFLSIFFLSLTILVPIIYGQIFTFINNIPKYNNYLQAEI-----LPPIMAKIYSIEP 156

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            ++      + +        +  I     R+ +I ++  +  + + I LF+F RD   I 
Sbjct: 157 DIADKIKNSLSNFINSIFTILGSIANNFWRYTIITINIFVLFLLIPIILFYFLRDWAKII 216

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             + SL          KI   +  ++ +   G   I +        A+ + G+   + LG
Sbjct: 217 ANMQSLLPIKTRPKILKILSAINNLLSAYIRGQLNICLLLSTYYSIAFTVIGIDLALLLG 276

Query: 246 VITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           ++T  + +IP           + I  L  G       + +   +          P ++G 
Sbjct: 277 ILTGFLVIIPFLGTFISFLLTLIIGYLTFGVTTKLLYIMIIYLVGNICESYIFTPKIIGD 336

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            I L  L   F +       G++G+F    +  +  ++    I   K +K
Sbjct: 337 KIGLHPLWIIFSIFACGSLFGIIGIFFAIPIAGITKILLLNLIKFYKSSK 386


>gi|288556236|ref|YP_003428171.1| sporulation integral membrane protein YtvI [Bacillus pseudofirmus
           OF4]
 gi|288547396|gb|ADC51279.1| sporulation integral membrane protein YtvI [Bacillus pseudofirmus
           OF4]
          Length = 374

 Score = 83.0 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 56/342 (16%), Positives = 117/342 (34%), Gaps = 15/342 (4%)

Query: 14  WMIMFIILVSLYFLKGFFA---PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +I   ++V  + L  FF+   P   A  I +   P       K + SS F +    +  
Sbjct: 13  VIIAIALIVFGWLLINFFSLTYPFWIAAAIAWFLQPWVRFMREKLKFSSGFASFFGLLGS 72

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQ----------HGIPVPRWLSDIPGGMWAS 120
           + L    +    +     ++    ++    +          + +  P W   +      S
Sbjct: 73  IILVSSVITGAIFLIGYSLRNFFQQIPGWIETSSISLQQFFNQVIFPFWQQILGIFDTFS 132

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
               + L             L       +    +   M    + ++ +F+I++++F  + 
Sbjct: 133 YEEQEALRQSIVQLGSQVGSLLGQAGQTLVDRITHILMGVPTFLVAFVFIILSIYFMGKQ 192

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                ++        F    +     V   +        I+ +  GL++     +  V  
Sbjct: 193 WTFYREKTREALAPSFLLLIRDFGAAVRTRLFGFLKAQFILMMITGLIVLVGLSILRVEH 252

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            V L V+  I  ++P  G         +YL I G+   A  L +   I + IV + + P 
Sbjct: 253 VVTLAVVIGIAELLPYLGTGTILIPWFVYLFIVGDFSLAIGLTILYGIIV-IVRQLIEPK 311

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++   + L  +     L  G++  G LGL  GPVL+  + ++
Sbjct: 312 ILSSNLDLNPVAVLISLFVGLQLFGALGLLFGPVLLVFLMIL 353


>gi|149181142|ref|ZP_01859642.1| hypothetical protein BSG1_10423 [Bacillus sp. SG-1]
 gi|148851229|gb|EDL65379.1| hypothetical protein BSG1_10423 [Bacillus sp. SG-1]
          Length = 343

 Score = 83.0 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 53/324 (16%), Positives = 120/324 (37%), Gaps = 20/324 (6%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P + AL+I     PI +    K +        ++   ++ +FI  +  L    +     L
Sbjct: 4   PFIIALVIALLINPIVNFLERKSKMPRGLAVALSLFLIIGVFIGLITLLITEIVSGANYL 63

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
            + +    QH   +  +  +          + + +   ++L+   +  +  N      + 
Sbjct: 64  ANVLP---QHVTTLVEYFENF-IAAQVIPFYHQIIGLFKNLEAGQQGAIMENIQAAGEKI 119

Query: 153 ASRFGMIFLDY--------------CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
           AS  G    ++                 +IF  +A FF  +D + +S++           
Sbjct: 120 ASSAGDFLQNFFQRLPNLVSWIPNAATVLIFSALATFFISKDWYHLSEKFSKYVPVKAAT 179

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GG 257
             +++   + K +         +     +++     +  V   + + ++T ++ ++P  G
Sbjct: 180 SGRRVFHDLKKALFGFIRAQFTLISITAVIVLIGLLILRVDYAITIALVTGLVDILPYLG 239

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
               F    IY LI GNI     L +   + +    + + P ++   I L  L T   L 
Sbjct: 240 TGAVFVPWIIYELITGNIGLGVGLGVLYLVVVVQ-RQIMEPKVLSSSIGLDPLATLIALF 298

Query: 318 GGVRTMGLLGLFIGPVLMALIAVI 341
            G + +G LGL +GPV + +++ +
Sbjct: 299 VGFKLVGFLGLILGPVTLVILSTL 322


>gi|55376336|ref|YP_134189.1| HTR-like protein [Haloarcula marismortui ATCC 43049]
 gi|55229061|gb|AAV44483.1| HTR-like protein [Haloarcula marismortui ATCC 43049]
          Length = 388

 Score = 83.0 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 69/396 (17%), Positives = 134/396 (33%), Gaps = 50/396 (12%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS-------- 53
           R T    + +     + +++   + L  F A ++  + + + S PIY    S        
Sbjct: 3   RSTRFQQRSLFAIGGLGLLIGVAFVLVQFRATLIFTVFLYYASRPIYRKLESVSTPSYFS 62

Query: 54  --KKEESSTFLAVIATVSV----------MCLFIVPLLFLFYYGMLEMKELVSKVVLANQ 101
                     LAV                    +VP +  F          +S +  A+ 
Sbjct: 63  EYSLPYRRQILAVTTISVFLLPFLLLFTYTLALVVPAVQQFIGQNDLASGYLSAIQSADS 122

Query: 102 HGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL 161
            G+P P        G+  S+L    +S  + + IL+   ++T     +    S  G +F 
Sbjct: 123 GGLPEP------IAGLQISDLLD--MSPEEIVTILNAPSVRTWIEQTLGTLISSIG-VFA 173

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
           D  +    ++   ++   DG  +S+ L    +       +  +  V   + S   G  + 
Sbjct: 174 DVGIQAFLLLSGTYYLLTDGPRLSRWLFDHFDE--SGVVESYAIAVDDELSSILFGNILN 231

Query: 222 AIGEGLVLGSAY--------WLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYL--- 269
           A+  G++    +            VP    +G +T   ++IP  G  I +  V   L   
Sbjct: 232 ALVTGIIGIVVFSAYNSISPAAVQVPFAPLVGALTGAGSLIPVVGMKIVYFPVGAILTVG 291

Query: 270 -LIKGNIFNA----TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            +  G           L L   +   I D  +RP++     +       F  + G    G
Sbjct: 292 AVASGQATAIGYVLLFLILAFVVVDTIPDFLIRPYV--SGNRTHVGLLMFAYILGPIVFG 349

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
             G+F+GP+L+ L+A  ++     +   +    S  
Sbjct: 350 AYGIFLGPILLVLVAQFFRTVAPYVATGEPPDQSKL 385


>gi|46447158|ref|YP_008523.1| hypothetical protein pc1524 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400799|emb|CAF24248.1| hypothetical protein pc1524 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 381

 Score = 83.0 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/316 (12%), Positives = 101/316 (31%), Gaps = 11/316 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P++ + +  +   P+   F    + S  F  ++  V +  + ++   +L    
Sbjct: 55  FVSSLFIPIVFSFLFYYLLRPLVCFFE-HLKMSRFFSILLTYVLIGIVLVIFFAYLLPIL 113

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++    +  V            L  +        L T      +         L    
Sbjct: 114 ATQIVAFANTSV----------ETLEKVKNSSQTFVLPTGFKLDLEGEIERRLLNLIQYA 163

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              + +               +  +   +F+  +D    +          F    + I +
Sbjct: 164 TAILSQNLLDIVGYLTRLATILAVIPFIVFYLLKDDHDFASGFLQHLPQDFGQNVRNILK 223

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + + + +   G+ +I+   G +L   Y + G+   + L ++  ++  IP   P      
Sbjct: 224 NIDETLSNYINGLVLISFSVGSMLFIGYLIIGLKYALILSIMALVLTTIPYLGPFLAITP 283

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++   +  +      +    AI        + P ++G  + +  L     L+      GL
Sbjct: 284 AVLTGLSHSPTMTLKVIAVFAIVQQTESNIVSPQIMGQRLNIHPLTLILLLLAAGSLYGL 343

Query: 326 LGLFIGPVLMALIAVI 341
           +GL +     A++ V+
Sbjct: 344 IGLLLATPFYAILKVL 359


>gi|291549176|emb|CBL25438.1| Predicted permease [Ruminococcus torques L2-14]
          Length = 407

 Score = 83.0 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 118/333 (35%), Gaps = 13/333 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEES--------STFLAVIATVSVMCLFIVPL 78
           + G   P +    I F      S    K                  I+ +  + L +  +
Sbjct: 38  IWGILFPFVFGGAIAFVINVPMSFLEKKIFGKTKDGNKVGKKLARPISLLLTIILAVGVI 97

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMW-ASELWTKHLSHPQSLKIL 136
             + +  + ++   +  ++++  + +P  + W+ +         +L  +   +       
Sbjct: 98  ALVMFGVIPQLTRTMGSLMISIANFVPQMQNWIREFSHNNQDIMKLVNQVQFNQDQAIKW 157

Query: 137 SETFLKTNGIDFIPRFASRFGMI---FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
             + L +   + +    S  G I   F  + ++  F    LF   +    I +   +   
Sbjct: 158 GISILGSGAGNMMNTTMSAVGSIVSGFATFFIAFSFACYILFQKEKLHVQIRKVFFAFIS 217

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                 + KI  +  +   +   G  + A+  G +      +  +P  + +G + A  A+
Sbjct: 218 KQKAEAFLKICSLTYQTFANFLTGQCVEAVILGSMFVVTLSILKMPYALLIGTLIAFTAL 277

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP        AV  +L+   N   A    +   I   I    + P +VGG + LP +   
Sbjct: 278 IPIFGAFIGCAVGCFLIFMVNPKQAILFIIVFLILQQIEGNLIYPHVVGGSVGLPSIWVL 337

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
             +  G   MG++G+ I   L++++  I++E +
Sbjct: 338 AAVTIGGNLMGIVGMLIFIPLVSVLYTIFREFV 370


>gi|158522017|ref|YP_001529887.1| hypothetical protein Dole_2006 [Desulfococcus oleovorans Hxd3]
 gi|158510843|gb|ABW67810.1| protein of unknown function UPF0118 [Desulfococcus oleovorans Hxd3]
          Length = 363

 Score = 83.0 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 129/360 (35%), Gaps = 12/360 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ I+ + I+ +  V +  +    APV++A++I +    + +     K      
Sbjct: 10  RRYANDPQIIILFAILVVGFVLVLTMGDMLAPVIAAIVIAYLLEGLINVLERLKVSRMIA 69

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           L  + T+ +  +  V ++F       ++ E+  ++     +G      L +    + A E
Sbjct: 70  LVTVFTLFLAGMVAV-IVFFLPLLSRQIAEMFQELPALMANGQKQLMRLPERYPELIAQE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
             ++ +S  +        F  T     +   +       +   + +I + + +FFF +D 
Sbjct: 129 QISQFISFLK--------FEITQWGQHLVSISIASVRGLITVVVYLILVPLLIFFFLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I   L             ++   V + I +   G     +       + +   G+   
Sbjct: 181 TKILGWLKLFLPKNTRL-AAEVWHEVNQQIANYVRGKIWEILIVWTAAYALFAALGLKFA 239

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPF 299
           V + +   +  + P  GA + F  V++    +  +  +    + G + L  +D   L P 
Sbjct: 240 VLISLAVGLSVLAPYIGATLMFFPVALVAFFQWGLSPSFTWIVVGYLILQALDGNLLAPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           L+   + L  +     L+      G+ GLF    L  L+  + K     +KE     +  
Sbjct: 300 LLSEVVDLHPVAIIVALLVFGGIWGMWGLFFAIPLATLVHAVLKTWFRYMKEKNPPATEE 359


>gi|313889430|ref|ZP_07823078.1| putative membrane protein [Streptococcus pseudoporcinus SPIN 20026]
 gi|313122262|gb|EFR45353.1| putative membrane protein [Streptococcus pseudoporcinus SPIN 20026]
          Length = 374

 Score = 83.0 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 49/334 (14%), Positives = 116/334 (34%), Gaps = 18/334 (5%)

Query: 28  KGFFAPVLSALIIGFTSW---PIYSSFI---SKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             F      A II         + +  +              ++A  + + LF   +  +
Sbjct: 40  LPFLYGAALAYIINIVMTAYENLLNRLVKTNRFFHLRRGIAMILAYATFIALFFWIVSIV 99

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               +  +  ++S           V +++ D+      +++   +      +      + 
Sbjct: 100 IPDLIASINMMLSF------DTGSVKQYIHDLSHNKIIAKV-IHYFGGDAKITQTVSNYS 152

Query: 142 KTNGIDFIPRFASRFGMIFL--DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
           +     F+    S    + +     +++    +  F+   +   + +Q + L +     Y
Sbjct: 153 QQLLKQFLSFLTSILTSMTVIASAIINVFVAFVFSFYVLGNKEQLCRQGNILVDTYTGIY 212

Query: 200 WKKI---SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
            ++I     ++       F+G TI A+  G +     +L  +P    +GV+ A  A+IP 
Sbjct: 213 AQRIHYIVGLLHNRFHGFFVGQTIEAVILGSLTALGMFLFKLPFAATIGVLVAFTALIPV 272

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
                   +   L++  ++  A    ++  I        + P +VG  IKLP +     +
Sbjct: 273 VGAYIGVTIGFILIMTQSLSQAIFFVIFIVILQQFEGNLIYPRVVGSSIKLPGMWVLMAI 332

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             G    G++G+ I   L A    + K++I   +
Sbjct: 333 TIGASLKGIVGMIIAVPLAATFYQMIKDNIDKKQ 366


>gi|302553800|ref|ZP_07306142.1| integral membrane protein [Streptomyces viridochromogenes DSM
           40736]
 gi|302471418|gb|EFL34511.1| integral membrane protein [Streptomyces viridochromogenes DSM
           40736]
          Length = 368

 Score = 83.0 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 50/326 (15%), Positives = 110/326 (33%), Gaps = 14/326 (4%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P++  L++   +WP+ + F+ ++       A + TV  + +    +  +      +  EL
Sbjct: 43  PLVVGLLLTTLTWPV-ARFLRRRGWPPALAASVVTVLFLLVAAGVVALIAVPVASQSGEL 101

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
              VV   Q                WA+           +    S       G+  +   
Sbjct: 102 TDGVVEGIQRL------------REWAAGPPLNIGDAQINKAFDSAVARAQQGVGSMVGT 149

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
                   +   ++ +  +  +FFF +DG      L              +       + 
Sbjct: 150 VVTGVSTVVGGVVTAVLALFLMFFFLKDGPKFLPWLSRQLPGRLADDVPIVFARGWATLG 209

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLI 271
           +       + + + +++G   W+ G+P  + L V+T + A +P  GA  +     +  L+
Sbjct: 210 AFVRSQAAVGLLDAVLIGLGLWILGIPLVLPLAVLTFVSAFVPIIGALFAGFVAVLIALV 269

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
              + +A  +     +   +     +P +    + L        +  G    G++G  + 
Sbjct: 270 SNGLTDALIVLAIIVVVQQLEGNVFQPMIQSRGLGLHAAVVLLAVTLGGSLAGIVGSLLA 329

Query: 332 PVLMALIAVIWKESIMAIKENKEKIS 357
             L ALIAV+W      + E  E+  
Sbjct: 330 VPLAALIAVVWNYVREQLGEPPEEPD 355


>gi|218439972|ref|YP_002378301.1| hypothetical protein PCC7424_3031 [Cyanothece sp. PCC 7424]
 gi|218172700|gb|ACK71433.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7424]
          Length = 377

 Score = 83.0 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 48/311 (15%), Positives = 112/311 (36%), Gaps = 13/311 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
            + +L+A +I F     Y+    K        A+   ++   +F +  + L    + + +
Sbjct: 37  ISILLTAALIAFLLN--YAVMALKPVLPRPIAAIFVYLAAGLIFGIIGVTLLPPVVNQGR 94

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           +L+ ++      G                        S   +        + + G+  + 
Sbjct: 95  QLIIRLPELVTQGQEQLNTFQAWSVEHNLPFNLQLITSDFFTRIQDQIRLIASTGLGLVL 154

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                      ++ L +I +++  F+   DG  + + L S    + P    +++  + K 
Sbjct: 155 --------GTFNWFLDLILILVISFYMLIDGERLWESLTSF---VSPQIQDQLTITLEKN 203

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           +R    G  I+ +   + L  A+ L   P  +   V   +M ++P         + + +L
Sbjct: 204 LRRFLTGQLILGLFMAICLTIAFLLLQTPFFLLFAVFIGLMELLPFIGATLGIGIVVIIL 263

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              N + A  + +   +   I D  + P ++G    LP +  F  L+ G +  G LG+ I
Sbjct: 264 TFINWWLALQVLIVSVVIQQIKDNIVSPRIMGNLTGLPPVIIFIALLLGAKIGGFLGVII 323

Query: 331 GPVLMALIAVI 341
              +  ++  +
Sbjct: 324 AIPITGVVKGL 334


>gi|206976093|ref|ZP_03237003.1| putative membrane protein [Bacillus cereus H3081.97]
 gi|217961880|ref|YP_002340450.1| hypothetical protein BCAH187_A4523 [Bacillus cereus AH187]
 gi|222097833|ref|YP_002531890.1| membrane protein [Bacillus cereus Q1]
 gi|206745845|gb|EDZ57242.1| putative membrane protein [Bacillus cereus H3081.97]
 gi|217065152|gb|ACJ79402.1| putative membrane protein [Bacillus cereus AH187]
 gi|221241891|gb|ACM14601.1| probable membrane protein [Bacillus cereus Q1]
          Length = 355

 Score = 83.0 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 50/311 (16%), Positives = 110/311 (35%), Gaps = 11/311 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L A  I +   P+      +            T++++ ++I+    + Y       
Sbjct: 43  ITPFLIACFIAYLLHPLIEKIHKEGMPR--------TLAILLIYILFFGGIGYGIYKGTP 94

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            ++ ++   N+      +       G+      T +       K+          I  + 
Sbjct: 95  VVIKQLQEINEQFPQFTKMYDSWMDGVTEQ---TANFPSFIHEKVKQIFIGVETKIQALL 151

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     LD  L I  +   +F+  +D          L    + +  + +++ + K 
Sbjct: 152 NKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQILAKEIDKS 211

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G   + +  G V   ++W  G+   + LG+I  I  +IP   PI     ++ + 
Sbjct: 212 LGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGITDIIPYFGPILGAIPALMIA 271

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +        +  AI  F+    L P++VG  +++  +     L+ G    G++GL I
Sbjct: 272 ATVSTSLLIKAGITIAILQFVESNILSPYIVGKSLRMHPVVIMLALLVGGEVAGIVGLLI 331

Query: 331 GPVLMALIAVI 341
              ++A+I  +
Sbjct: 332 SVPVLAVIRTV 342


>gi|239918422|ref|YP_002957980.1| predicted permease [Micrococcus luteus NCTC 2665]
 gi|239839629|gb|ACS31426.1| predicted permease [Micrococcus luteus NCTC 2665]
          Length = 438

 Score = 83.0 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 50/326 (15%), Positives = 116/326 (35%), Gaps = 24/326 (7%)

Query: 13  RWMIMFIILVSLYFLKGFF-------APVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           R +++ + L  L  +  FF       APV   L +   ++P+ +  I +        A  
Sbjct: 33  RMLVIVLTLAGLVLVVQFFQGIASIAAPVFLGLNLVIVAYPLQAWLIRR-GLHPVLGATT 91

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + ++ +  V    + + G+  + EL        Q  + V  WLS+             
Sbjct: 92  TVLLIVAVMGVFGGMMVWSGLELVAELPKYTDRFQQIVLDVSHWLSE------------- 138

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
               P  +     +   +          ++           ++ +I+ +FF   D   + 
Sbjct: 139 RGVTPDMVSQQLASIDMSAVTGTAVSAVTKIATNVYAVFGLLVTVIMGMFFLAMDSMDVE 198

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +++  L        +        + +R  ++  T+  +   ++   A  L GVP  +  G
Sbjct: 199 RRVRLLST--ARHEFGHALVEFAQGVRRYWVVTTVFGLIVAVLDVIALMLIGVPLALVWG 256

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           V++ +   +P  G  I     ++  L  G   +   + +  ++  F++   ++P + G  
Sbjct: 257 VLSFLTNYVPNVGFIIGLLPPAVLGLAAGGWSDFLWVVVSYSVLNFVLQSVIQPKVAGDA 316

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFI 330
           I +    +F  L+     +G LG  +
Sbjct: 317 IGVIPTVSFLSLLFWAWVLGPLGAIL 342


>gi|147676778|ref|YP_001210993.1| permease [Pelotomaculum thermopropionicum SI]
 gi|146272875|dbj|BAF58624.1| predicted permease [Pelotomaculum thermopropionicum SI]
          Length = 364

 Score = 83.0 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 50/327 (15%), Positives = 117/327 (35%), Gaps = 7/327 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + I  ++   +  +F P L  LI+     P+   F   K   +   A    + V    + 
Sbjct: 22  LVIAAIAFKLVIPYFLPFLLGLILAVAIEPVVGLFQKLKMPRA--AATGMAMLVTVGSLA 79

Query: 77  PLLFLFYY-GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            + +L     ++E+   ++               L         +E +    +H  +   
Sbjct: 80  AVAWLTVSKLIVELARFLANAPSHTSIMKDQSSLLMQ--RLQSYAEGFPPEFTHHLNKNA 137

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T + +  +  + R          +  L ++  +IA FFF +D   + +++ S     
Sbjct: 138 EMLTEMFSEKLSLLAREILGVITGLPNQLLLVVIALIAAFFFSKDLPILKKKMLSAIPRE 197

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +   ++ ++  +            I++    LV+ +   +      VA+ ++  +++ IP
Sbjct: 198 YHHKFEIMAGEIYHSSIGFIKAQAILSAITSLVILAGLIILKTEYVVAISLLGGLVSPIP 257

Query: 256 G-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G    F    I  L++G  F A  L +     + ++  ++ P ++G  + +  L    
Sbjct: 258 VLGVGTIFIPWIIISLLEGKTFMAAGLIILFFAVV-VIKHSIEPKVLGENMGIAPLSVLI 316

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L  G    G  G  +GP ++     +
Sbjct: 317 SLYVGYELFGAYGFILGPFVLITYNAL 343


>gi|327438419|dbj|BAK14784.1| predicted permease [Solibacillus silvestris StLB046]
          Length = 362

 Score = 83.0 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 41/311 (13%), Positives = 102/311 (32%), Gaps = 7/311 (2%)

Query: 48  YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
               + K+        +   + +  LF   L+ +      ++  LV       +      
Sbjct: 57  LQRILEKRGMPRWGSLITIVLIIAGLFASFLILVGTPIANQVNRLVENAPTIAKDIEEAA 116

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
            ++ D    +       +      +  I       +       ++   F    +   L++
Sbjct: 117 DFILDNKENIPMLPPQVEEFIASVTNSIQDIAVASS-------KYLVSFLSGAVTVTLTL 169

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           +       F  +D    + Q+  +       + KK    +  V+RS   G  +++    +
Sbjct: 170 VLAPFFFIFMLKDHEKFAPQIYGIFSGERRTWVKKTLEEIDNVLRSYVQGQVLVSFLLAI 229

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
           ++   Y + G+   + L +    M MIP   P      ++ + +  N F+   + +   +
Sbjct: 230 MMYIGYLIIGLEYSLLLALFAFFMNMIPFIGPWLSLVPAVIVALLNNPFDVIWVGVVTLV 289

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              +    + P ++G  + +  L     ++      G +G+ I      +I VI +    
Sbjct: 290 AQQVESNLITPNVMGRSLDIHPLTVISIVLAAGNIAGFIGILIAIPTYCVIKVIVQNIYE 349

Query: 348 AIKENKEKISS 358
             K+ KE  + 
Sbjct: 350 ERKQIKETANK 360


>gi|291451527|ref|ZP_06590917.1| integral membrane protein [Streptomyces albus J1074]
 gi|291354476|gb|EFE81378.1| integral membrane protein [Streptomyces albus J1074]
          Length = 467

 Score = 83.0 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 103/307 (33%), Gaps = 19/307 (6%)

Query: 17  MFIILVSLYFLKGFFAPV---LSALIIGFTSWPIYS---SFISKKEESSTFLAVIATVSV 70
           + ++  +L+ L      V   + A I       +     + + +          +  V  
Sbjct: 98  LLVLAGTLWVLMKVIVSVQLVVFAFIAALLVTALLQPTVTALRRMGMPRGAATAVTAVLG 157

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             +  +   F+ +  M  +  L S+V         +  WL + P  +   ++     +  
Sbjct: 158 FVIMGLVGWFVVWQVMENIDTLASQVQDGIDE---LRGWLLNSPFHVTEDQINDIAKTLR 214

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            ++   +E                    + ++    ++  + +  F   DG  I +   +
Sbjct: 215 DAVGTNTEELTSAGLEGV---------TVLVEVLTGMVLAMFSTLFLLYDGKRIWRWTLN 265

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L                 + + +   G  ++A+ + + +G   W   VP  V L V   +
Sbjct: 266 LVPAQARPGIAGAGPRAWRTLTAYVRGTVMVALIDAIFIGLGLWFLDVPMAVPLAVFIFL 325

Query: 251 MAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            A IP    +   A+++ + L+   +F A  + +       I    L+PF++G  +++  
Sbjct: 326 FAFIPLVGAVVSGALAVVVALVTQGVFTALMVLIVVLAVQQIEGHILQPFILGRAVRVHP 385

Query: 310 LPTFFGL 316
           L     +
Sbjct: 386 LAVVLSV 392


>gi|152976804|ref|YP_001376321.1| hypothetical protein Bcer98_3102 [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152025556|gb|ABS23326.1| protein of unknown function UPF0118 [Bacillus cytotoxicus NVH
           391-98]
          Length = 352

 Score = 83.0 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 51/311 (16%), Positives = 112/311 (36%), Gaps = 11/311 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P   A  I +   P+      +            T++++ ++I+    L Y       
Sbjct: 43  ITPFFIACFIAYLLHPLIEKLHKQGMPR--------TLAILLIYILFFGGLGYGIYKGTP 94

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            ++S++   N+     P ++      M      T +       K+          I  + 
Sbjct: 95  VVISQLQEMNK---QFPEFMKMYDSWMDGVTEQTDNFPSFIHDKVKQIFVGIEMKIQSLL 151

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     LD  L I  +   +F+  +D  +       L  + +    + +++ + K 
Sbjct: 152 NKVMSTARGVLDSLLIIFLIPFIVFYILKDYGAFYHVFWKLTPYKWRDTGQILAKEIDKS 211

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G   + +  G V   A+W  G+   + LG++  +  +IP   PI     ++ + 
Sbjct: 212 LGSYIRGQLFVCLVLGGVSALAFWFIGMKYPLLLGIVVGVTDIIPYFGPILGAIPTLMIA 271

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +        +  AI  F+    L P++VG  +++  +     L+ G    G++GL I
Sbjct: 272 ATVSTSLFIKAGIALAILQFVESNILSPYIVGKSLRMHPVVIMLALLVGGEVGGIVGLLI 331

Query: 331 GPVLMALIAVI 341
              ++A+I  +
Sbjct: 332 SVPILAVIRTV 342


>gi|291550779|emb|CBL27041.1| sporulation integral membrane protein YtvI [Ruminococcus torques
           L2-14]
          Length = 374

 Score = 83.0 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 55/315 (17%), Positives = 109/315 (34%), Gaps = 16/315 (5%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + L GF  P +   II   + P+ +    + +      + +  + V+ L      F   +
Sbjct: 29  WKLLGFLMPFVVGWIIASIATPVVNWLEKRLKIRKKLGSALIIIGVLALMGTLGYFAVSW 88

Query: 85  GMLEMKELV--------SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            + E+  L+              +Q GI +    S +P G+     WT  +++       
Sbjct: 89  LVSEVSSLIKDFPEMYVQLEKGLHQIGISMSGIFSKLPDGIQNG--WTTTVANLDDTMGS 146

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               L +   +     A         Y +S I  +++ +FF  +   +   +  +     
Sbjct: 147 ----LMSKISEPTVSAAGNIAKRVPSYLVSTIVAVMSSYFFISEREEVVTWVKQIAPKSV 202

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
                 +   +   +   F     I     L+L        V   V    + A +  +P 
Sbjct: 203 TERMIMVIDNLKYAVGGYFKAQFKIMGIVFLILAVGLGFLRVHYFVLSAFLIAFLDFLPF 262

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G   +    +IY +  G+   A  L +  AI   IV + ++P LVG  + L  L T   
Sbjct: 263 FGTGTAMIPWAIYAVFMGDYKRAIMLVVIYAITQ-IVRQLIQPKLVGDSVGLNPLVTLLL 321

Query: 316 LVGGVRTMGLLGLFI 330
           +  G R  G++ + +
Sbjct: 322 IYIGYRIGGVIWMIL 336


>gi|225390466|ref|ZP_03760190.1| hypothetical protein CLOSTASPAR_04220 [Clostridium asparagiforme
           DSM 15981]
 gi|225043477|gb|EEG53723.1| hypothetical protein CLOSTASPAR_04220 [Clostridium asparagiforme
           DSM 15981]
          Length = 372

 Score = 83.0 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 56/342 (16%), Positives = 113/342 (33%), Gaps = 5/342 (1%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + I  V L +      P ++A +I +          ++       +A++A +   C    
Sbjct: 30  LAIAFVILRYGLPMLTPFVAAFVIAYLLNTPICFAANRLRLPRKAMAILAVLLFYCTVGS 89

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPV--PRWLSDI-PGGMWASELWTKHLSHPQSL 133
            +  LF       + L S +     H I        S I    +         +   +  
Sbjct: 90  LIALLFIKLFSSGRVLFSNLPAIYSHYIEPVFAAVFSSIEQTVLRMDPSLIGTMEELEGH 149

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
              S   + ++       + S          + ++ MII  FF   D   ++        
Sbjct: 150 FAQSAGQMVSSLSMDAVGWISGIASSLPGLFIELLLMIITTFFIAADYDKLTGFCLRQMG 209

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                 +  I   V   +        +I     + L     L GV + V +  + A+  +
Sbjct: 210 EKPKGIFLNIQSYVVGTLFVCIRSYALIMSITFVELAVGLTLIGVKNSVLIAFVIAVFDI 269

Query: 254 IPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +P  G         +   + GN   A  L +   + + ++   + P +VG  I L  + T
Sbjct: 270 LPVLGTGGIMIPWMVITAVMGNPRLAIGLLVVY-LVITVIRNIIEPKIVGSQIGLHPVVT 328

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
              +  G +  G+LGLF  P+ ++L+  +     + I +  E
Sbjct: 329 LVSMFAGAQLFGVLGLFGFPIGLSLLGYLNDTDTIRIFKKSE 370


>gi|326331167|ref|ZP_08197463.1| putative permease [Nocardioidaceae bacterium Broad-1]
 gi|325951062|gb|EGD43106.1| putative permease [Nocardioidaceae bacterium Broad-1]
          Length = 473

 Score = 83.0 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 58/335 (17%), Positives = 120/335 (35%), Gaps = 16/335 (4%)

Query: 14  WMIMFIILVSLYFLK--GFF----APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           W  + I+      ++  GF      PV+ AL+I     P+     ++     +  A+   
Sbjct: 97  WRFLVIVAAGYLIVRALGFLSIVVVPVVIALLIAALVSPVVDGL-ARVGLKRSISALFVV 155

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + V+   I  L F          +L  + V A          + D           T+  
Sbjct: 156 IGVLAAVIAMLSFAGTQVANGFTDLAGQTVKA-------LDEIRDWLINGPFHASETQID 208

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +   +++   E +      +   R  S  G + LD    +  ++ + +FF  +G  I   
Sbjct: 209 TWLNTVQTTVEDWAAAYASNPFSRV-SEVGGVALDVFAGLFIVLFSTYFFCAEGERIWGW 267

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L  L      +      R+    +        I+A  + + +        +P  VA+GV+
Sbjct: 268 LVRLAPRAARSRMDSSGRVAWVSLTQFTRATVIVAAVDAVGIMIIAAALQIPFVVAIGVL 327

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIK 306
             + + +P        AV++ + +         L L G I +  ++   L+PFL+G  ++
Sbjct: 328 VFLSSFVPLIGATVAGAVAVLVALVSQGPVTALLMLGGVILVQQLEAHGLQPFLLGRWVR 387

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +  L     +  G+   G+ G  +   L+A +  +
Sbjct: 388 VHPLGVILAVATGIVLGGVAGALVAVPLVAALNAV 422


>gi|295097974|emb|CBK87064.1| Predicted permease [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 354

 Score = 83.0 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 52/347 (14%), Positives = 115/347 (33%), Gaps = 14/347 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +P+ I   +I+      L+F  G  AP+L A+++ +   WP  +           
Sbjct: 10  RRRFSDPEAIALLVILVAGFGILFFFSGLLAPLLVAIVLAYLLEWP-TARLEHIGCSRRW 68

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             +++  + V  L ++  + +       +  +     + N+            P  M A 
Sbjct: 69  ATSIVLVLFVGILLLMSFVVMPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +     +    +  + ++ +K +    +           L   + ++ + + +FF  +D
Sbjct: 129 IIDAMAENMRARIMTMGDSVVKYSLASLV---------GLLTLAVYLVLVPLMVFFLVKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +          ++ + + + I +   G  +  I  G+     + + G+  
Sbjct: 180 KEQMLNAVRRVLPRNRGLAG-QVWQEMNQQITNYIRGKVLEMIVVGVATWIGFVIFGLNY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V+     +IP  GA +    V  + L   G        F    I   +    L P
Sbjct: 239 SLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGLGTEFWSCFAVYLIIQGLDGNLLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L    + L  L     +V      G  G+F    L  LI  +    
Sbjct: 299 VLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVHAW 345


>gi|196039150|ref|ZP_03106456.1| putative membrane protein [Bacillus cereus NVH0597-99]
 gi|196029777|gb|EDX68378.1| putative membrane protein [Bacillus cereus NVH0597-99]
          Length = 355

 Score = 82.6 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 50/311 (16%), Positives = 110/311 (35%), Gaps = 11/311 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L A  I +   P+      +            T++++ ++I+    + Y       
Sbjct: 43  ITPFLIACFIAYLLHPLIEKIHKEGMPR--------TLAILLIYILFFGGIGYGIYKGTP 94

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            ++ ++   N+      +       G+      T +       K+          I  + 
Sbjct: 95  IVIKQLQEINEQFPQFTKMYDSWMDGVTEQ---TANFPSFIHEKVKQIFVGVETKIQALL 151

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     LD  L I  +   +F+  +D          L    + +  + +++ + K 
Sbjct: 152 NKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQMLAKEIDKS 211

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G   + +  G V   ++W  G+   + LG+I  I  +IP   PI     ++ + 
Sbjct: 212 LGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGITDIIPYFGPILGAIPALMIA 271

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +        +  AI  F+    L P++VG  +++  +     L+ G    G++GL I
Sbjct: 272 ATVSTSLLIKAGITIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEVAGIVGLLI 331

Query: 331 GPVLMALIAVI 341
              ++A+I  +
Sbjct: 332 SVPVLAVIRTV 342


>gi|121535600|ref|ZP_01667407.1| protein of unknown function UPF0118 [Thermosinus carboxydivorans
           Nor1]
 gi|121305840|gb|EAX46775.1| protein of unknown function UPF0118 [Thermosinus carboxydivorans
           Nor1]
          Length = 344

 Score = 82.6 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 52/338 (15%), Positives = 125/338 (36%), Gaps = 9/338 (2%)

Query: 12  MRWMIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
            RW+   +++  LY L      + P++ A I+ F   P+ +   S               
Sbjct: 4   ARWVKFGVLVAGLYLLSKATAIYLPIILATILAFVLNPVVNWLCSLSLGPKKQA----CS 59

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + + +   L      ++    L+     +++    +P  L  I       E       
Sbjct: 60  RPVAILLGFFLAALLLSLMATYILLPFAQESDKLADSLPALLIKIRTLTSTIEYRANMAE 119

Query: 129 HPQSLKILSETFLKTNGIDF--IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            P ++++L +  L         + + A    + F    + +I + +  ++F +D   + +
Sbjct: 120 VPDNVRVLIDEGLARAAAFSVELAQRAINAFIGFASQVVELIVVPVLTYYFLKDWRDLKR 179

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
               L           +   +  V+     G  +++I  G ++ S  +L G+   + LG+
Sbjct: 180 MAVDLFPAGMRGKATVVIEEMGTVVSKYVRGQVLLSIIMGFIVFSGMYLLGLDYPLVLGL 239

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +  +   IP   PI     ++ L        A  + ++  +   + +  + P ++G  I 
Sbjct: 240 LAGLTEFIPIIGPIIGAIPAVLLAYATEPALALKVIIFYFLAQQLENHIILPKIMGHTID 299

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L  +     L+ G +  G++G+ +   + A++ V+ K 
Sbjct: 300 LHPVFVMVSLLIGGQLYGIMGMMLAVPVAAILRVLLKH 337


>gi|294497247|ref|YP_003560947.1| sporulation integral membrane protein YtvI [Bacillus megaterium QM
           B1551]
 gi|295702619|ref|YP_003595694.1| sporulation integral membrane protein YtvI [Bacillus megaterium DSM
           319]
 gi|294347184|gb|ADE67513.1| sporulation integral membrane protein YtvI [Bacillus megaterium QM
           B1551]
 gi|294800278|gb|ADF37344.1| sporulation integral membrane protein YtvI [Bacillus megaterium DSM
           319]
          Length = 343

 Score = 82.6 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 125/337 (37%), Gaps = 5/337 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           W+I  I++V L     +  P++ AL+       I        +    +  ++  +  +  
Sbjct: 7   WVIASIVIVCLLI--PYSLPIVFALLTALALEGIVQKLHQSFKMKRVYAVLMTFILYVVS 64

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            I+   F+    + ++  L        +       + + I    +++ L T+ +S  +  
Sbjct: 65  LILIGFFIVRTIVTQVVALSKIAPSFVKEIYETAIYPTIIKWKYYSNALPTEVISSIERT 124

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
              +   L +     +      F      + L  +  ++AL F   +  +I  ++ S   
Sbjct: 125 LEKTVNSLDSLLKSTV-EIIISFAATVPGFLLEFLIYLVALVFISLELPAIKNKIKSFLT 183

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  + +   + +          I+++   ++     WL  VP    L ++  I+ +
Sbjct: 184 EETKYKLQVVITQLIQAGVGFIKAQIILSVMTFVMAYVGLWLLDVPYTALLSLLIVIVDI 243

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +P  G         I+ L +G+   A  LF+     + +V + + P +    + +  L  
Sbjct: 244 LPILGTGSVLVPWGIFALTQGHDSLAIGLFILFG-VITVVRRVVEPKVFSTNMGISPLAA 302

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
              L  G + +G +GLF+GP L+ L   + K  I+ I
Sbjct: 303 LVSLYIGFKLLGFVGLFLGPALVILYDALRKVGIIQI 339


>gi|29347686|ref|NP_811189.1| putative permease [Bacteroides thetaiotaomicron VPI-5482]
 gi|29339587|gb|AAO77383.1| putative permease [Bacteroides thetaiotaomicron VPI-5482]
          Length = 377

 Score = 82.6 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 63/334 (18%), Positives = 121/334 (36%), Gaps = 16/334 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L G   P   A +I +  +P+   F  K    S  +++  ++ ++ L  V L +L     
Sbjct: 31  LSGVLLPFFIAWLIAYMVYPLVKFFQYKLRLKSRIVSIFCSLFLITLVGVSLFYLL---- 86

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
             +  ++S++   N   +      +        SE   +++      +ILSE  +     
Sbjct: 87  --VPPMISEIGRMNDLLVTYLTNGAGNNVPKNLSEFIHENIDLQALNRILSEENILAAIK 144

Query: 147 DFIPRFASRFGM---IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           D +PR  +       I      S I ++  +F    D   I++    L  + +  +   +
Sbjct: 145 DTVPRVWALLAESLNILFSILASFIILLYVIFILL-DYEVIAEGWLHLLPNKYRTFASNL 203

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
              V   +   F G  ++A   G++    + +   P  +ALG+    + M+P    I F 
Sbjct: 204 VHDVQDGMNRYFRGQALVAFCVGILFSIGFLIIDFPMAIALGLFIGALNMVPYLQIIGFL 263

Query: 264 AVSIYLLI----KGNIFNATC--LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
              +  ++     G  F           AI   I D  L P ++G    L        L 
Sbjct: 264 PTVLLAILKAADTGENFWIIIACALAVFAIVQIIQDTFLVPKIMGKITGLNPAIILLSLS 323

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
                MG+LG+ I   L  L+   ++  I+  + 
Sbjct: 324 IWGSLMGMLGMIIALPLTTLMLSYYQRFIINKER 357


>gi|296104116|ref|YP_003614262.1| hypothetical protein ECL_03779 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058575|gb|ADF63313.1| hypothetical protein ECL_03779 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 354

 Score = 82.6 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 52/347 (14%), Positives = 116/347 (33%), Gaps = 14/347 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +P+ I   +I+      L+F  G  AP+L A+++ +   WP  +   +       
Sbjct: 10  RRRFSDPEAIALLVILVAGFGILFFFSGLLAPLLVAIVLAYLLEWP-TARLENIGCSRRW 68

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             +++  + V  L ++  + +       +  +     + N+            P  M A 
Sbjct: 69  ATSIVLVLFVGILLLMAFVVMPVAWQQGINLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +     +    +  + ++ +K +    +           L   + ++ + + +FF  +D
Sbjct: 129 IIDAMAENMRARIMTMGDSVVKYSLASLV---------GLLTLAVYLVLVPLMVFFLVKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +          ++   + + I +   G  +  I  G+     + + G+  
Sbjct: 180 KDQMLNAVRRILPRNRGLAG-QVWEEMNQQITNYIRGKVLEMIVVGVATWIGFLIFGLNY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V+  +  +IP  GA +    V  + L   G        F    I   +    L P
Sbjct: 239 SLLLAVLVGLSVLIPYIGAFVVTIPVVGVALFQFGLGTEFWSCFAVYLIIQALDGNLLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L    + L  L     +V      G  G+F    L  LI  +    
Sbjct: 299 VLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVHAW 345


>gi|284032875|ref|YP_003382806.1| hypothetical protein Kfla_4991 [Kribbella flavida DSM 17836]
 gi|283812168|gb|ADB34007.1| protein of unknown function UPF0118 [Kribbella flavida DSM 17836]
          Length = 525

 Score = 82.6 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 90/285 (31%), Gaps = 16/285 (5%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
              ++ +L I     P+   F+ +   +      +  + ++         +      ++ 
Sbjct: 217 LILLVVSLFIAVGLNPLVEWFMRR-GLNRGLSVGVVFLLMILAVAGVGFAIVPVVTDQIN 275

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L+             P WL  +      +EL  ++    ++   + +  L       I 
Sbjct: 276 GLIRNA----------PEWLDLLTKSRTLNELNERYQFIQKAQDYVQDPALAQRAFGGIL 325

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                 G +  +   S   ++I   +F     S+ +   SL           +   V   
Sbjct: 326 G----VGKVVANALFSGFTILILTLYFLASLPSVKRAAYSLVPASRRTRVSILGDEVLGR 381

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGV-PSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
           +     G  ++A+  G+V+     + G+    VAL ++    A IP    +    +   +
Sbjct: 382 VGGYVSGQFLVALCAGVVMFVFLQIVGLRDYAVALAIVVMFTAFIPMVGGLIGVVLVAAI 441

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
                ++       +G I   + +  + P ++   + +P   T  
Sbjct: 442 GFTDGLWVGIACLAYGVIYQQVENYVVAPRIMRRAVDIPGAVTVI 486


>gi|119962935|ref|YP_946407.1| permease [Arthrobacter aurescens TC1]
 gi|119949794|gb|ABM08705.1| putative permease [Arthrobacter aurescens TC1]
          Length = 378

 Score = 82.6 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 110/302 (36%), Gaps = 15/302 (4%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
            + ++         +A + ++ +    +  +      +  EL+S+          +  +L
Sbjct: 75  MLRRRGWRGGLATGVAFLGLLIVLGGVITVIVMSVRSQWDELISQAAAGLDE---LESFL 131

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
              P  +             + L    E  ++      +   A     +  ++      +
Sbjct: 132 LTGPFPI-----------DREQLNQAREAVVEFAQSSQVRSGAVTGLSVVTEFLAGASLV 180

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           ++ LFFF +DG  I +      +    A  +++ +   +V+     G  I+A+ + + +G
Sbjct: 181 VVILFFFLKDGAKIWEFFLRPFKGRREAKLRRVGKRTMEVLGGYVRGTAIVALVDTVAIG 240

Query: 231 SAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
           +A  +  VP  + L +I  I A IP  GA ++    ++  L+      A  + +      
Sbjct: 241 AALLIMQVPLAIPLAIIVFIGAFIPLVGATVAGILAALVALVANGPIVALIVIIVVIAVN 300

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            +    L+P ++G  ++L  L     L  G    G++G  +   + A+   I +      
Sbjct: 301 QLEGDLLQPVVMGKSLELHALVILMALTAGTILAGIIGAVLAVPIAAVTWAIIQVWTAED 360

Query: 350 KE 351
            +
Sbjct: 361 PD 362


>gi|256832710|ref|YP_003161437.1| hypothetical protein Jden_1485 [Jonesia denitrificans DSM 20603]
 gi|256686241|gb|ACV09134.1| protein of unknown function UPF0118 [Jonesia denitrificans DSM
           20603]
          Length = 455

 Score = 82.6 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/347 (12%), Positives = 110/347 (31%), Gaps = 24/347 (6%)

Query: 12  MRWMIMFIILVSLYF------LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
             W+ + ++ ++++       L G F  ++ AL +     P+    +            +
Sbjct: 79  ALWLTVLVVFLAIFLWRAMGSLTGLFINLVIALFLSLALEPMIVWLVRH-GWRRGGATAV 137

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
                +   I  +       + +  +LV  +    +    +  W+              +
Sbjct: 138 TLFGSLIAVIGLVSVFGRMFIEQATQLVRTLPDMYES---IAAWIEK------------R 182

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                  +  L    +   G       A   G   + +  ++  +++  ++    G    
Sbjct: 183 TQYDVPEMSQLQRQLIDQIGSAEAANQALAIGAGLVSFLFNLSVVLLVAYYLSAAGPRFR 242

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             + +           ++  I  + I        ++A            + GVP  + L 
Sbjct: 243 ASICAWLSPAHQTEVLRLWDITQRKIADYINSRVLLAAICSFFTAIFLQIIGVPYALPLA 302

Query: 246 VITAIMA-MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V T +++  +P  G  I      ++ L  G++ +A  + ++  +   + +  L P +   
Sbjct: 303 VFTGVVSQFVPTIGTYIGGALPIVFALTTGDLTDAVAILIFIVVYQQVENLWLSPKISAR 362

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            ++L        ++G     G LG F+   + A I  I    +   +
Sbjct: 363 ALELNPAVALIVVLGFGAVFGALGAFLALPVAATITAIASTYLRRHE 409


>gi|45934803|gb|AAS79467.1| putative permease [Streptomyces bikiniensis]
          Length = 382

 Score = 82.6 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 43/318 (13%), Positives = 105/318 (33%), Gaps = 17/318 (5%)

Query: 14  WMIMFIILVSLYFLKGFFA---PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +++      ++ L   ++   P++  L+I   +WP ++  + +        A + TV  
Sbjct: 25  LLVLLGTAAVIWLLGRMWSIVWPLVIGLLITTLTWP-FARLLRRLGWPPALAASVVTVLF 83

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +    +  +      +  EL   VV   Q    +  W +  P  +   ++     +  
Sbjct: 84  LAVTAGTVALIAVPVASQSGELADGVVEGIQR---LREWTAGPPLNIGDDQITGALDTAT 140

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
             L+    + L T               +   + +           F +DG      L  
Sbjct: 141 DRLQNSVGSLLTTLATGVGTVVNGVVTAVLALFLMFF---------FLKDGPRFLPWLAR 191

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                       I+      + +       + + + +++G   W+ GVP  + L V+T +
Sbjct: 192 QLPGRLATDATTIAERGWDTLGAFVRSQAAVGLLDAVLIGIGLWILGVPLVLPLAVLTFV 251

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            A +P  GA ++     +  L+   + +A  +     +   +     +P +    + L  
Sbjct: 252 SAFVPIIGALLAGFVAVLIALVSNGLTDALIVLAIIVVVQQLEGNVFQPMIQSRGLGLHA 311

Query: 310 LPTFFGLVGGVRTMGLLG 327
                 +  G    G++G
Sbjct: 312 AVVLLAVTLGGSLAGIVG 329


>gi|13473951|ref|NP_105519.1| integral membrane transport protein [Mesorhizobium loti MAFF303099]
 gi|14024702|dbj|BAB51305.1| integral membrane transport protein [Mesorhizobium loti MAFF303099]
          Length = 662

 Score = 82.6 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 45/343 (13%), Positives = 108/343 (31%), Gaps = 20/343 (5%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +   +V+LYF +  F P+  AL++ F   P+ S+             +IA +  +     
Sbjct: 37  IVTAVVALYFGREVFLPIAIALLLTFALAPLVSTLRRVGIPR-----IIAVIGSVFGAFA 91

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG--------GMWASELWTKHLS 128
            L    +    ++  L   +     + +     L    G              +  +   
Sbjct: 92  ALGLFSFIVATQVSVLAQNIPGYQTNILTKIHSLKKTGGEGGIVARLSRVIERVGQEIDQ 151

Query: 129 HPQSLKILSETFLKTNGIDFIPR-----FASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                    +   +   ++ + R              +    S   +II + F   +   
Sbjct: 152 QEPPAPAADKPQREPVPVEVVARERPLEVLQSLVGTLISPLASAGLIIIVVIFMLLEREE 211

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   L  +       +  +   K +    L   ++     + +    W+ G+P+ + 
Sbjct: 212 LRDRFIRLVGYGDLHRTTQALQDAGKRVGQYLLMQLVVNTVYAIPIAIGLWILGIPNALL 271

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF--IVDKTLRPFLV 301
            G++   +  +P   P+    + ++L +      +  L+  G   +   +    + P+L 
Sbjct: 272 WGMLALALRFVPYIGPVIGALLPLFLALAVAPGWSLVLWTAGLFVVMELVTGNVVEPWLY 331

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           G    L  L      +      G LGL +   L   + V+ + 
Sbjct: 332 GSRTGLSPLAIIVAAIFWTWLWGPLGLVLSTPLTVCLVVLGRH 374


>gi|258516348|ref|YP_003192570.1| sporulation integral membrane protein YtvI [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257780053|gb|ACV63947.1| sporulation integral membrane protein YtvI [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 362

 Score = 82.6 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 61/314 (19%), Positives = 116/314 (36%), Gaps = 4/314 (1%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P + A+I+     P+ S F  +   S       A V ++      L+ L    + E+ 
Sbjct: 43  LLPFILAVIVSVLLEPLVSFFQLRMRFSRGMAVTSAMVIIIGGAGTLLVLLVLQLVAELI 102

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           EL + + L  ++G  +   L D  G      L    +++ Q+        LK      I 
Sbjct: 103 ELSASLDLYMRNGRMIMESLVD-RGINIYGNLPPTAVNYLQTSVASLADNLKLFASKLIN 161

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
            F            L  I  ++A FF  +D  +I +         +      +SR V + 
Sbjct: 162 AFL-HMVYGIPGIILVGIVSLLAAFFISKDRDTIFRLWRRCVPAPWGERSIDVSREVSRA 220

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYL 269
             +      I+     +   +  ++ G+   + +G+      +IP  G    F     + 
Sbjct: 221 FMAYIRSQLILVTITMVQCIAGLYIIGIDYALTIGLTVGFFDLIPVLGPGSVFIPWIAWS 280

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           L  G+      L +  A+ L +V + L   +V   + L  L T   +  G++  G+LGL 
Sbjct: 281 LFTGDYGLGIKLSILFALIL-LVRQLLEAKIVSANLGLHPLATLLAIYVGLKVFGVLGLI 339

Query: 330 IGPVLMALIAVIWK 343
           +GP+ +  +   +K
Sbjct: 340 LGPMALIALQAGYK 353


>gi|323489471|ref|ZP_08094698.1| putative permease [Planococcus donghaensis MPA1U2]
 gi|323396602|gb|EGA89421.1| putative permease [Planococcus donghaensis MPA1U2]
          Length = 351

 Score = 82.6 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 54/325 (16%), Positives = 108/325 (33%), Gaps = 2/325 (0%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +     P++ ALI      P  +    + +       +   +  + +    L ++    +
Sbjct: 25  ILPVSIPLIVALITAIFLEPFVNFIHKRFKWHRKSAVISVFILFLLVVSALLYWIVTQLI 84

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
             + +    V         +                     S    L    E        
Sbjct: 85  GRIIQFTKMVPEYTNSLSVMWDEFQRFFFRSTKDMPVEVVSSFETELVGFMEGIRNWVLS 144

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
                  S        + +S I  +IALF F  D   +   L    +       + +   
Sbjct: 145 IINYDTVSNLLTGIPSFLVSFIVFLIALFLFMLDLPELKTLLFKRLKDSTAEKVRFMFAR 204

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAV 265
           + KVI        +++    +V             + + ++  I+  IP  G+ I  T  
Sbjct: 205 LNKVIFGFLKAQFLVSCIIFIVSLITLAFIVPEYALVMSLVIWIVDFIPILGSIIVLTPW 264

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
             Y  I G++   T L +  A+ L ++ +T+ P ++G  I L  L T   +  G++ +G 
Sbjct: 265 FAYEFITGDVVFGTQLAVL-ALVLLVIRRTVEPKVMGTQIGLSPLATLIAMFIGLQLLGF 323

Query: 326 LGLFIGPVLMALIAVIWKESIMAIK 350
           LG FIGP+++ L     +  ++ I 
Sbjct: 324 LGFFIGPLIVILFTSAREAGMIKID 348


>gi|110679325|ref|YP_682332.1| hypothetical protein RD1_2044 [Roseobacter denitrificans OCh 114]
 gi|109455441|gb|ABG31646.1| membrane protein, putative [Roseobacter denitrificans OCh 114]
          Length = 355

 Score = 82.6 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 57/328 (17%), Positives = 122/328 (37%), Gaps = 16/328 (4%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            ++LV+L FL     P +    I +   P+      +   S      I T+  + +F + 
Sbjct: 17  AVLLVALMFLGDVLLPFVLGGAIAYFLDPVADRLE-RLGLSRVAATAIITLCGLLVFFIV 75

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS-ELWTKHLSHPQSLKIL 136
            L +    + +  +LV+            P +  +I   +           S  Q     
Sbjct: 76  ALLVIPALVEQAVKLVN----------VAPEYARNITAFLTERFPTLLDENSAMQRSLHS 125

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               +++ G + +    S    +     L II  ++A+ +   D  +++ ++DSL     
Sbjct: 126 LGETIQSRGAELLETALSSAASLLNVLILLIIVPVVAV-YLLLDWDNMTAKIDSLLPRDH 184

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               ++++  + +V+ S   GM  + +  G     A  +AG+   + +G I  ++  IP 
Sbjct: 185 APTIRQLASQIDQVLASFIRGMGTVCLILGTYYAIALMVAGLQFGLVVGFIAGLVTFIPY 244

Query: 257 GAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
              +   A++I L +    G   +   +    A+   +    + P LVG  + L  +   
Sbjct: 245 LGALIGGALAIGLALFQFWGEWMSVGIIVGIFALGQVLEGNVITPKLVGNSVGLHPVWLL 304

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             L       G +G+ +   L A + V+
Sbjct: 305 LALSVFGALFGFVGMLVAVPLAAALGVL 332


>gi|323701853|ref|ZP_08113523.1| sporulation integral membrane protein YtvI [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533157|gb|EGB23026.1| sporulation integral membrane protein YtvI [Desulfotomaculum
           nigrificans DSM 574]
          Length = 362

 Score = 82.6 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 48/333 (14%), Positives = 109/333 (32%), Gaps = 6/333 (1%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           +L +  FL     P + A+ I F   P+          S      ++ +++       + 
Sbjct: 32  LLHAFTFLLPLMVPFVLAIFISFLIEPMVVILQKHVRMSRGPAVALSMLALFSFLGTIIS 91

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI-PGGMWASELWTKHLSHPQSLKILSE 138
            +    + E+ +L   +         +  W  ++ P            +++       S 
Sbjct: 92  LILLRLVTELIDLSKTLPDVIT---DIRIWFENLLPRLQHLYGELPPAVTNYVQESFGSM 148

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                  I                    ++  ++A +F  +D  ++ ++   +  H +  
Sbjct: 149 AQALQVLISKTVNSLLNTFSAVPGIVTLLVVSLLASYFISKDRRALVRKWIKVVPHPYGE 208

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-G 257
               + + V     S      I+     L+  +  ++ G    + +G++     +IP  G
Sbjct: 209 KSLDVLKEVFSAFLSYIKAQGILVSISTLISITGLYIIGADYALTMGLLIGFFDIIPVLG 268

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
               F     +  I G       L +   I L    + L   +V   + L  L T   L 
Sbjct: 269 PATVFLPWIAWSFISGADTFGIKLLILYFIVLGT-RQLLEAKVVSDNLGLHPLATLVALF 327

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            G + +G +G+ +GP+++  +  I K  I   +
Sbjct: 328 LGFKLLGFIGMVLGPIMLIAVQAIAKAGIHTSR 360


>gi|300791109|ref|YP_003771400.1| hypothetical protein AMED_9310 [Amycolatopsis mediterranei U32]
 gi|299800623|gb|ADJ50998.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
          Length = 400

 Score = 82.6 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 47/300 (15%), Positives = 106/300 (35%), Gaps = 13/300 (4%)

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                 I  ++ + +    L F+       + +L  ++   N+    +  WL + P  + 
Sbjct: 83  RGLATAIVLIAGLAVLGGLLTFVVTQFSSGLPQLQRQL---NESLNQIKEWLINGPAHLR 139

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             E   + ++        ++++L    +      AS  G I   + L++   I    FF 
Sbjct: 140 -QEQIQQFINQVFGFLQNNQSWLTDTAL----TTASTVGEILTGFLLTLFITI----FFL 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
             G  I   L  +             R     + S       +A+ + + +G   W+ GV
Sbjct: 191 SGGEGIWTFLVRVAPGRVRNRVDVAGRRGFASLVSYVRATAAVAVVDAVGIGIGLWIVGV 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSI-YLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P  + L  +  + A IP    +    V++   L+      A  +       + +    L+
Sbjct: 251 PLVIPLATLVFLGAFIPIIGAVLTGGVAVLIALVTNGFIGAVIVLAIVIGVMQLESHVLQ 310

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           P L+G  +KL  L     +  G+   G+ G  +   ++A++    +  +     +  +++
Sbjct: 311 PLLLGRAVKLHPLSVVLAITVGLVVGGIAGALMAVPILAVLNAGVRSLLHEENPDPAEVN 370


>gi|298374299|ref|ZP_06984257.1| membrane protein [Bacteroides sp. 3_1_19]
 gi|298268667|gb|EFI10322.1| membrane protein [Bacteroides sp. 3_1_19]
          Length = 385

 Score = 82.6 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 64/360 (17%), Positives = 133/360 (36%), Gaps = 23/360 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   +++  I+  +  L+    P L A ++ +   P    F  K    S  L+++A +
Sbjct: 16  RIVFGILVISGIIYLIALLRNALLPFLIAWLLAYMMQPFVKFFQYKLCFKSRILSIMAVL 75

Query: 69  SVMCLFIVPLLFLFY-YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             + L I  L+ +       E  + +  +   +     VP               W ++L
Sbjct: 76  VTLGLLITLLVVMVIPSIAAEADKTLELIRTHDPGEGHVP----------LIPHSWMEYL 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD-----YCLSIIFMIIALF-FFYRDG 181
               +   + E   K N +  + + A +   I  +     + ++I+F+I+  F F   D 
Sbjct: 126 ESNVNFAQIMELLSKENLLKAVKQIAPQLWSILSNTFSILFSITIVFVILLYFIFILLDY 185

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I+     L    +  + + ++  V   +   F G ++IA+  G++L   + +   P  
Sbjct: 186 EKIANGWIDLIPERYRPFLQGLAEDVEYSMNRYFRGQSLIALSVGVLLAIGFKIINFPLA 245

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGA------IELFIVDKT 295
           V LG+   ++ +IP    I    + +  L++          ++G       I   I D  
Sbjct: 246 VTLGLFIGVLNLIPYMQAIGIIPMILLSLLRSAETGENFWLIFGMAILVLGIVQCIQDLY 305

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L P ++G  + L        L      +G +GL I   L  L    +K  I+      + 
Sbjct: 306 LTPRIMGKAMGLNPAIILLSLSIWGTILGFIGLIIALPLTTLCLSYYKRFILHEYNELDS 365


>gi|262044147|ref|ZP_06017220.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038485|gb|EEW39683.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 197

 Score = 82.6 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 61/184 (33%), Gaps = 6/184 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  II+  L+ ++ F      A  +   +WP+                +  T+ +  L
Sbjct: 18  LFLALIIISCLWVVQPFILSFAWAGTVVIATWPVLLRLQRVLFGKRLLAVLAMTLLLFLL 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           F++P+  L    +     L+ K++ +    +P   WL+ +P  G      W   L    S
Sbjct: 78  FVIPIALLVNSLVDNSVPLI-KLISSGNVTLPDFAWLNSVPLVGDKLYSAWHGLLDMGGS 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G + +   L ++F  +     Y  G  ++       
Sbjct: 137 AIMAKVRPYIGTTTSWFVGQAAHIGKLLVYCGLMLLFSAL----LYWRGEQVAYGFRYFA 192

Query: 193 EHLF 196
             L 
Sbjct: 193 TRLA 196


>gi|118379196|ref|XP_001022765.1| hypothetical protein TTHERM_00630410 [Tetrahymena thermophila]
 gi|89304532|gb|EAS02520.1| hypothetical protein TTHERM_00630410 [Tetrahymena thermophila
           SB210]
          Length = 730

 Score = 82.6 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 68/194 (35%), Gaps = 8/194 (4%)

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
               F    +DY L  I  + +LF+        S     L   L     KK+   + K I
Sbjct: 433 SLFTFLFSIIDYLLQTIIYLTSLFYLL-SSPQFSLNKLLLLLPLEGDIKKKLEFSLEKNI 491

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSIYLL 270
           R  F     I+    ++      +  +P      V+  ++A+IP            IYL 
Sbjct: 492 RGVFASNLKISFYHIILTWLMLDIFDLPFSFITSVLAGVLAIIPIIPVYFITIPYCIYLY 551

Query: 271 IKGNIFN-ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             G+I   A     +  I L  +D      +    I +    T   +  G+    L G+ 
Sbjct: 552 FSGSILEMAILFVGYAHISLLSID-----AIYSKNIAVHPFITGICVAMGLSVFELKGII 606

Query: 330 IGPVLMALIAVIWK 343
           IGP+++  + ++  
Sbjct: 607 IGPLIVCSVYLLVD 620


>gi|325001994|ref|ZP_08123106.1| integral membrane protein [Pseudonocardia sp. P1]
          Length = 445

 Score = 82.6 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 43/315 (13%), Positives = 104/315 (33%), Gaps = 11/315 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I   ++++ + +  F+  V+  +++      +               A+ + V ++  
Sbjct: 57  ALIAVGLVIAGWVIGTFWV-VVWPVVLAILLTTVLRPPAGWLIRHRVPPALASIVVLLVG 115

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
                            +         Q    + +W+S  P            ++   + 
Sbjct: 116 IGAVSGLFVAIAPSVAGQTQQITTGVIQAVGQIQQWVSG-PPLNLGDGQIGDIINQVTAQ 174

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
              S T +    +  +   AS    + L   L+        FFF +DG      + ++  
Sbjct: 175 LQQSITAIAGGVLTGVSTVASGLLALVLALVLT--------FFFVKDGPRFLPWISAISG 226

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                +  ++   +  V+        ++++ + + +G    L  VP  + L ++T +   
Sbjct: 227 RTAGRHLTEVLSRMWSVLGGFIRVQALVSLIDAVFIGIGLVLLSVPLALPLAILTFLGGF 286

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP  GA ++     +  L+      A  + +   +   +    L+PFL G  +KL     
Sbjct: 287 IPIVGAFVAGALAVLIALVTQGFTTAVLVLVLILVVQQVEGNVLQPFLQGQSLKLHGAVV 346

Query: 313 FFGLVGGVRTMGLLG 327
              +  G    G+ G
Sbjct: 347 LLAVTAGSSLAGIAG 361


>gi|168184524|ref|ZP_02619188.1| putative membrane protein [Clostridium botulinum Bf]
 gi|237795256|ref|YP_002862808.1| hypothetical protein CLJ_B2025 [Clostridium botulinum Ba4 str. 657]
 gi|182672351|gb|EDT84312.1| putative membrane protein [Clostridium botulinum Bf]
 gi|229261807|gb|ACQ52840.1| putative membrane protein [Clostridium botulinum Ba4 str. 657]
          Length = 364

 Score = 82.6 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 114/320 (35%), Gaps = 9/320 (2%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P + A  I +   P+   F +K +    F  +I  + V+ L I+ +       +  + 
Sbjct: 43  LVPFIWAFGIAYILNPLMKYFQNKFKLKRIFSIIITYIIVIGLLILFINTFVPKIIKNIG 102

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           +L           I   +W +D        ++  ++     ++  L      +N  +   
Sbjct: 103 DLFVHSPDYINQTI---QWFNDNIKYSKVYDMLMENYQISNNIPNLLNKI--SNLTNTFL 157

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK----KISRI 206
                  + F  + +  +F +I   +   D  S+ + L      LF            + 
Sbjct: 158 NTFLNTTIKFTSFLVRFVFGLIISIYLLLDKESLIENLKKFILALFGEKNYSKILSFFKE 217

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           V  V     +G +I ++  GL+  +   +  VP    +  I  I  MIP   P      +
Sbjct: 218 VDIVFSKYIIGKSIDSLIIGLMCFAGLTIMKVPYAALISFIVGITNMIPYFGPFIGMIPA 277

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
             + +  N   A  + ++  I        L P ++G  + L  +   F +  G  T G++
Sbjct: 278 FIITLFFNYIKAIWVLIFIIILQQFDGWYLGPKILGNQVGLSPIWIIFAITIGGGTFGVM 337

Query: 327 GLFIGPVLMALIAVIWKESI 346
           G+F+   + A+I +   + I
Sbjct: 338 GMFLSVPIAAIIKIYLDKYI 357


>gi|281415381|ref|ZP_06247123.1| predicted permease [Micrococcus luteus NCTC 2665]
          Length = 438

 Score = 82.6 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 50/326 (15%), Positives = 116/326 (35%), Gaps = 24/326 (7%)

Query: 13  RWMIMFIILVSLYFLKGFF-------APVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           R +++ + L  L  +  FF       APV   L +   ++P+ +  I +        A  
Sbjct: 33  RMLVIVLTLAGLVLVVQFFQGIASIAAPVFLGLNLVIVAYPLQAWLIRR-GLHPVLGATT 91

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + ++ +  V    + + G+  + EL        Q  + V  WLS+             
Sbjct: 92  TVLLIVAVMGVFGGMMVWSGLELVAELPKYTDRFQQIVLDVSHWLSE------------- 138

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
               P  +     +   +          ++           ++ +I+ +FF   D   + 
Sbjct: 139 RGVTPDMVSQQLASIDMSAVTGTAVSAVTKIATNVYAVFGLLVTVIMGMFFLAMDSMDVE 198

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +++  L        +        + +R  ++  T+  +   ++   A  L GVP  +  G
Sbjct: 199 RRVRLLST--ARHEFGHALVEFAQGVRRYWVVTTVFGLIVAVLDVIALMLIGVPLALVWG 256

Query: 246 VITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           V++ +   +P  A I      ++  L  G   +   + +  ++  F++   ++P + G  
Sbjct: 257 VLSFLTNYVPNVAFIIGLLPPAVLGLAAGGWSDFLWVVVSYSVLNFVLQSVIQPKVAGDA 316

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFI 330
           I +    +F  L+     +G LG  +
Sbjct: 317 IGVIPTVSFLSLLFWAWVLGPLGAIL 342


>gi|306829411|ref|ZP_07462601.1| membrane protein [Streptococcus mitis ATCC 6249]
 gi|304428497|gb|EFM31587.1| membrane protein [Streptococcus mitis ATCC 6249]
          Length = 388

 Score = 82.6 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 54/336 (16%), Positives = 116/336 (34%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI L  L FL     PV+ + ++ +   PI       K         I  V +    I
Sbjct: 42  ISFIFLPVLDFLGIVMLPVILSGLLYYLLNPIVDWMEKHKINR-VLAISIVFVIIGIFII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      V    +    V   L              + L++  +   
Sbjct: 101 WGLAVAIPNLQRQVLNFAKNVPSYLEDADRVINDLVTKRLPDDFRPQLEQVLANVSTEAT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +  + + +  ++++  F S    +     +++I +   LF+  RDG  +   L     + 
Sbjct: 161 MWASKISSQAVNWVSSFISGASQV----IVAVIIVPFMLFYLLRDGKGLRDYLTKFIPNK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   V K + +   G   +AI   ++    + + G+   V LGV   I+ ++P
Sbjct: 217 LKEPVGEVLSDVNKQLSNYVRGQVTVAIIVAIMFIIFFKIIGLRYAVTLGVTAGILNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPVMLLKVVIVFIVEQTIEGRFVSPLILGSQLNIHPINVLFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      G+ G+ +G  + A   V+        K+
Sbjct: 337 LLTSGSMFGIWGVLLGIPVYASAKVVISAIFNWYKK 372


>gi|255009701|ref|ZP_05281827.1| putative transmembrane protein [Bacteroides fragilis 3_1_12]
 gi|313147487|ref|ZP_07809680.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313136254|gb|EFR53614.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 379

 Score = 82.6 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 127/365 (34%), Gaps = 20/365 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFL----KGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M    +     +R  I   ++V L  L     G   P   A +I +  +P+   F  K  
Sbjct: 1   MERKKITFDSFIRGSICCALIVGLLILFKRLSGVLLPFFVAWLIAYMIYPLVKFFQYKLR 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYY-GMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
             S  +++   +  + +  + + +L     + E+  +   +V    +G            
Sbjct: 61  FKSRIISIFCALFSITIIGIAIFYLLVPPMLAEIGRMNDLLVTYLTNGAY-----RSGTV 115

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGM---IFLDYCLSIIFMII 172
               SE   +H+      +ILSE  +     + +P+  +       I      S I ++ 
Sbjct: 116 PPTLSEFIHRHIDLQALNRILSEENIMNTIKETVPKLWALVAESINILFSVFASFIILLY 175

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
            +F    D  SI++    L    +  +   +   +   +   F G  ++A   G++    
Sbjct: 176 VVFILL-DYESIAEGWLHLLPGKYRTFASNLVNDIQDGMNRYFRGQALVAFCVGILFSIG 234

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI----KGNIFNATC--LFLWGA 286
           + +   P  +ALG+    + M+P    I F    I  ++     G  F        +   
Sbjct: 235 FLIIDFPMAIALGLFIGALNMVPYLQIIGFLPTVILAILKAADTGENFWVILAGALVVFI 294

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           +   I D  L P ++G    L        L      +G+LG+ I   L  L+   ++  I
Sbjct: 295 VVQAIQDGFLVPRIMGKITGLNPAIILLSLSIWGSLLGMLGMIIALPLTTLMLSYYQRFI 354

Query: 347 MAIKE 351
           +  + 
Sbjct: 355 INKER 359


>gi|222529321|ref|YP_002573203.1| hypothetical protein Athe_1330 [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456168|gb|ACM60430.1| protein of unknown function UPF0118 [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 351

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 126/359 (35%), Gaps = 16/359 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFL------KGFFAPVLSALIIGFTSWPIYSSFISK 54
           M    L  +     + + +I + +YF            P L AL + +   P      +K
Sbjct: 1   MHIIKLVKRYFTDILFIALIAIVIYFFTNMKAFWPILIPFLIALFLSYLLKPCVDFLETK 60

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
                    +I+   +  + I+  ++     + E K+L+  +       I + +W  +I 
Sbjct: 61  IRSRD-ISILISFAIIFGITIMVFVYFIPLFVSETKQLIQNIPDYI---ILIQKWFFEI- 115

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                ++L         +  I  E   K     F+               L  + + I  
Sbjct: 116 DSKLLNKLNIDIKEILNANSINIEGISKQTLSIFL-----NIVKSISSNILYYLLIPIIS 170

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           F+  RD   +   +  L    +      I   + +V+     G  + A   GL+    + 
Sbjct: 171 FYILRDWKRLVMWIKWLLPEKYRKEGLYIFVDINRVLHQYIRGQLLDAFIVGLLSFVGFS 230

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           L  V     LGVIT I  +IP   PI  +  ++ + +  +   A  + ++  +   +   
Sbjct: 231 LLSVRYAALLGVITGIGNLIPYFGPIFSSIPAVIIALSDSYIKAILVVIFLVLLQQVDSF 290

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            + P ++G  + L  L     ++   +  G + +F    + A+I +I+   +  IK  K
Sbjct: 291 IISPRVIGSKVGLHPLTIIIVIILANKIFGFIAMFFAIPIAAVIKIIFINIMKRIKSEK 349


>gi|220916301|ref|YP_002491605.1| protein of unknown function UPF0118 [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219954155|gb|ACL64539.1| protein of unknown function UPF0118 [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 359

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/343 (13%), Positives = 116/343 (33%), Gaps = 19/343 (5%)

Query: 9   QGIMRWMIMFIILVS---LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +   R + +  +      L+  +    P    + +  +  P+ ++   +   S T  A+ 
Sbjct: 16  RATARALTVLAVAAGFGFLWLARDLLVPTALGVTLALSVHPVVAALERR-GLSRTLAAIA 74

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T+  + +    L  + +     +     ++             +        A+ L  +
Sbjct: 75  GTLLTVAV----LAAIGWVLWDRIAAFAQELPGYEGRLREAAAGIRR-----HAAHLQAQ 125

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                Q+ +   E  ++                  L        ++  L+F   +G    
Sbjct: 126 SEQLVQTPRRPGEVKVQETVPW--GTLLVGTAQGALTLAGQATVVVFVLYFTLAEGPRFR 183

Query: 186 QQLDSLGEHLFPAYWKKISRI--VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
            +L +  +       + ++ +  + + +    L    +    G+V  + Y L G+     
Sbjct: 184 VKLLAWADRRPRGRARLLAALEELHRDVEQYMLNRVALNAILGVVTWAVYALYGLEHAAI 243

Query: 244 LGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            G+ TA++  IP  G A   F   ++ LL  G   +   +     + + +    + P  +
Sbjct: 244 WGITTALLHFIPYVGPALGLFLPTAMALLQYGTAKDVALVAAIYLVLVNVQGNVVDPLFL 303

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           G  ++L  L  F G +      G +GLF+   L++ + ++ + 
Sbjct: 304 GKQLRLSPLVVFLGSLFWFWLWGPVGLFLAVPLLSTVRIVCRH 346


>gi|149202228|ref|ZP_01879201.1| membrane protein [Roseovarius sp. TM1035]
 gi|149144326|gb|EDM32357.1| membrane protein [Roseovarius sp. TM1035]
          Length = 347

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/341 (15%), Positives = 121/341 (35%), Gaps = 18/341 (5%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            +  V L+FL     P +    I +   P+      +   S     V+ T+  +  F+V 
Sbjct: 9   AVFFVLLWFLGDVILPFVLGGAIAYFLDPVADRLE-RMGLSRAASVVVITLIAILAFVVI 67

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL--WTKHLSHPQSLKI 135
           +L +    + +   L +           V   L+    G  ++      +  S      +
Sbjct: 68  VLLIVPSLVNQAVALFN-----------VAPELARDLHGFLSTHFPALFEPDSALNKTLL 116

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                ++  G   +    S      ++  + ++ + +   +   D  ++  ++D L    
Sbjct: 117 SLGETIRERGGQLLETLLSS-AASMVNILILLVIVPVVAVYLLYDWDNMIAEIDHLLPRD 175

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                + ++  +   + S   GM  + +  G     A  L G+   + +G I  ++  IP
Sbjct: 176 HAPVIRSLAGQIDNTLASFIRGMGTVCLILGTYYAVALMLVGLQFGLVVGAIAGLITFIP 235

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF---IVDKTLRPFLVGGPIKLPFLPT 312
               I    +++ L +     +   + L  A+ +    I    L P LVG  + L  +  
Sbjct: 236 YVGSIVGGVLAVGLALFQFWGDWVSVGLVAAVFVSGQVIEGNFLTPKLVGSSVGLHPVWL 295

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            F L       G +G+ +   + A + VI + ++   ++++
Sbjct: 296 IFALSAFGALFGFVGMLVAVPVAASLGVIARFALEQYRDSR 336


>gi|91223519|ref|ZP_01258784.1| permease PerM [Vibrio alginolyticus 12G01]
 gi|91191605|gb|EAS77869.1| permease PerM [Vibrio alginolyticus 12G01]
          Length = 357

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/350 (15%), Positives = 114/350 (32%), Gaps = 14/350 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +    I+    +++YF     AP+L A+++ +   WP+      +     T   +I
Sbjct: 15  DPHAVSLVAILLFGFITIYFFGHLIAPLLVAIVLAYLLEWPVVKMC--RIGVPRTLSVII 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + L ++ L  L      ++  L++ +             L      +        
Sbjct: 73  VILVFVGLMLIALFGLVPTIWTQVGNLINDIPNMYNG-------LQKFIVTLPERHPELA 125

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +L   +++   ++      G   +    +    I     + +I + + +FF  +D   + 
Sbjct: 126 NLEIVETVVTNAKNQALGLGESVVKGSLASLVSIAT-LAVYLILVPLLIFFLLKDKEEML 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +          K+   + + I +   G  +  +  G V    + L  +     L 
Sbjct: 185 RIASGILPK-NRKLANKVWHEMNEQISNYIRGKVLEILIVGGVSYVTFALLDLRYSALLA 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V   +  +IP  GA      V+I  L   G       L L   I   +    L P L   
Sbjct: 244 VAVGLSVLIPYIGAAAVTVPVAIVGLFQWGLTPPFYWLLLAYGIIQALDGNVLVPVLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            + L  +     ++      G  G+F    L  L+  +W       +   
Sbjct: 304 AVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWHALPSTEENEP 353


>gi|307325861|ref|ZP_07605061.1| protein of unknown function UPF0118 [Streptomyces violaceusniger Tu
           4113]
 gi|306888649|gb|EFN19635.1| protein of unknown function UPF0118 [Streptomyces violaceusniger Tu
           4113]
          Length = 370

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/322 (14%), Positives = 101/322 (31%), Gaps = 15/322 (4%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
             V  AL+      P+                 +A    + + +  L  +      E   
Sbjct: 62  VAVFLALVATALLRPLADLLARVLP--RPLAVALAVFGTLFVVLGLLALVGNAAAGEAGR 119

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           LV ++         + RWL   P  +    L   H            +F+  +    I R
Sbjct: 120 LVGELRGGISR---IERWLEGPPFHVRRGVLSGTHD--------KVTSFVSRHRATLISR 168

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
             S  G   ++   ++   +    FF   G  + +           + W + +R      
Sbjct: 169 ALSSAGR-VVEAGTALFLALFCSIFFIHSGDRMWRWFRGQLPERARSPWDRAARAAWTTF 227

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLL 270
                G+ ++A     ++G A  L  VP  + L ++      +P  G+PI+    ++  L
Sbjct: 228 AGYTRGIIVVAASNAALVGIALSLLRVPLALPLTLLVFFATFVPLIGSPIALAVATVVAL 287

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
                  A  + L            L P ++   ++L  +     ++ G    G++G  +
Sbjct: 288 AGRGPAIAAVVLLLIVAVGQFEGHVLHPLVMSWAVRLHPVVVAISVIAGSIVAGVIGAIV 347

Query: 331 GPVLMALIAVIWKESIMAIKEN 352
              ++++   + +       + 
Sbjct: 348 AVPMVSVAWSVTRALRRRPPDE 369


>gi|298388101|ref|ZP_06997646.1| membrane protein [Bacteroides sp. 1_1_14]
 gi|298259131|gb|EFI02010.1| membrane protein [Bacteroides sp. 1_1_14]
          Length = 377

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 63/334 (18%), Positives = 120/334 (35%), Gaps = 16/334 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L G   P   A +I +  +P+   F  K    S  +++   + ++ L  + L +L     
Sbjct: 31  LSGVLLPFFIAWLIAYMVYPLVKFFQYKLRLKSRIVSIFCALFLITLVGISLFYLL---- 86

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
             +  +VS++   N   +      +        SE   +++      +ILSE  +     
Sbjct: 87  --VPPMVSEIGRMNDLLVTYLTNGAGNNVPKNLSEFIHENIDLQALNRILSEENILAAIK 144

Query: 147 DFIPRFASRFGM---IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           D +PR  +       I      S I ++  +F    D   I++    L  + +  +   +
Sbjct: 145 DTVPRVWALLAESLNILFSILASFIILLYVIFILL-DYEVIAEGWLHLLPNKYRTFASNL 203

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
              V   +   F G  ++A   G++    + +   P  +ALG+    + M+P    I F 
Sbjct: 204 VHDVQDGMNRYFRGQALVAFCVGILFSIGFLIIDFPMAIALGLFIGALNMVPYLQIIGFL 263

Query: 264 AVSIYLLI----KGNIFNATC--LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
              +  ++     G  F           AI   I D  L P ++G    L        L 
Sbjct: 264 PTVLLAILKAADTGENFWIIIACALAVFAIVQIIQDTFLVPKIMGKITGLNPAIILLSLS 323

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
                MG+LG+ I   L  L+   ++  I+  + 
Sbjct: 324 IWGSLMGMLGMIIALPLTTLMLSYYQRFIINKER 357


>gi|291563071|emb|CBL41887.1| sporulation integral membrane protein YtvI [butyrate-producing
           bacterium SS3/4]
          Length = 369

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 60/330 (18%), Positives = 120/330 (36%), Gaps = 5/330 (1%)

Query: 16  IMFIILVSLYFLK--GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           ++ + LV ++ L+   FF P +   I+   + P+   F  + +      +++    V+ L
Sbjct: 17  LLTVYLVCVWGLRLVVFFLPFVIGWIVAAIANPVVRFFEKRLKIVRRHGSMVLIAGVLAL 76

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            I  +  LF +   EM E   + +      I     L+    G     L     +   S 
Sbjct: 77  VIFGIYALFSWVFREMTEF-GQALPGIYASIREEVDLACERIGGLLKYLPADTETTIISE 135

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                 ++            SR      +  ++ I + ++ + F  D   + + +  +  
Sbjct: 136 LENVGGYIGDFVQKIAASAGSRVVRTLPEVFVNTIIVFLSSYLFLADHDKLVETVRKVMP 195

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                Y + +   +  +I   FL    I     +VL        VP  + LG+  AI+  
Sbjct: 196 GPVIKYGRMMKNDIRTLIGGYFLAQFKIMFVVAVVLVIGMLFLRVPYGIFLGIAIAILDF 255

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +P  G   +    ++  L  G    A  L +   +    + + ++P +VG  + LP L T
Sbjct: 256 LPMFGTGTALIPWAVVRLFTGEYGYALSLVILYVLTQG-IRQVIQPKIVGDSMGLPPLAT 314

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            F L  G +  G+ G+ I   +  L    +
Sbjct: 315 LFFLYLGFKFRGIAGMIIAVPVGILFIRFY 344


>gi|168243266|ref|ZP_02668198.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168466761|ref|ZP_02700615.1| permease PerM [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|195630801|gb|EDX49393.1| permease PerM [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|205337593|gb|EDZ24357.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
          Length = 355

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/347 (14%), Positives = 115/347 (33%), Gaps = 14/347 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +P+ I   +I+      L+F  G  AP+L A+++ +   WP  +   +       
Sbjct: 10  RRRFSDPEAIALLVILVAGFSILFFFSGLLAPLLVAIVLAYLLEWP-TARLQAIGCSRRW 68

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             +++  + V  L ++  + +       +  +     + N+            P  M A 
Sbjct: 69  AASIVLILFVGILLLMAFVVMPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +     +    +  + ++ +K +    +           L   + ++ + + +FF  +D
Sbjct: 129 IIDAMAENMRTRMLNMGDSVVKYSLASLV---------GLLTLAVYLVLVPLMVFFLVKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +          ++   + + I +   G  +  +  G+     + L G+  
Sbjct: 180 KEQMLNAVRRVLPRNRGLAG-QVWNEMNQQITNYIRGKVLEMVVVGVATWLGFLLFGLNY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V+     +IP  GA +    V  + L   G        F    I   +    L P
Sbjct: 239 SLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGLGTEFWSCFAVYLIIQALDGNLLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L    + L  L     +V      G  G+F    L  LI  +    
Sbjct: 299 VLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVHAW 345


>gi|309775952|ref|ZP_07670944.1| membrane protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916234|gb|EFP61982.1| membrane protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 401

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/328 (16%), Positives = 100/328 (30%), Gaps = 22/328 (6%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEES--------STFLAVIATVSVMCLFIVPLLFLFY 83
            P +    I F          ++             +  AV+A +  + +    L  L  
Sbjct: 48  TPFILGFAIAFLLNKPMELIETRLLGKVPMKPQHKRSIAAVLAVILGITIVCAFLALLLP 107

Query: 84  YGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                +  LV                ++            +       + L       L 
Sbjct: 108 QLFDSIFSLVKAFPGYVEDFQKFALDFVERYAIDTKQVTNYITETDFFEKLTGFVTDALP 167

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                      ++    F    L+I+  I+A  +   D   +S     +   LFP    +
Sbjct: 168 ---------QMAKATYAFGSTLLNILLSIMAGLYMLIDKERLSGYAKKINYALFPTEVSE 218

Query: 203 ISRIV----PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
               +      +  +  +G  I ++  G++      +   P  + L VI  +  MIP   
Sbjct: 219 YLHRMVLASGDIFNNFIVGKAIDSLIIGVLCYIGSLIFQFPYALLLSVIIGVTNMIPVFG 278

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P       I +L   +   A    L+           L P ++G  + LP +   F +  
Sbjct: 279 PFIGAVPGIVILFIIHPITALYFALFIFALQQFDGNILGPLILGDKLGLPSIGILFSVCV 338

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESI 346
           G    G++G+FIG    A+I +  KE +
Sbjct: 339 GGGLFGVIGMFIGVPCFAVIYMAVKEFV 366


>gi|313204814|ref|YP_004043471.1| hypothetical protein Palpr_2353 [Paludibacter propionicigenes WB4]
 gi|312444130|gb|ADQ80486.1| protein of unknown function UPF0118 [Paludibacter propionicigenes
           WB4]
          Length = 377

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/328 (16%), Positives = 120/328 (36%), Gaps = 9/328 (2%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L A ++ +   PI   F  K    S  L++IAT+ +    I+ L+ +    +    
Sbjct: 37  LLPFLVAWLLAYLLQPIVKLFQHKLRFKSRVLSIIATLILFFGSIIGLISILAPIVSLEV 96

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           + +S+++ A    I V  ++          + +  HL     LK  +           + 
Sbjct: 97  QKLSQLIGAFSKTIDVNTFIPA--AWQDEIKYYLTHLDFQTLLKDQNIMEGFKKLAPGLW 154

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
            F +      + + + +I  +  +F    D   I+     +    +     +I   +   
Sbjct: 155 SFINGSLDFVMGFSVIVIVFLYLVFILL-DYEKITSGFYGIIPPKYKTLITEILSDLESG 213

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           +   F G  +IA+   ++    + +  +P  + LG++   + ++P    ++     +  L
Sbjct: 214 MNRYFRGQALIALIVAILFVIGFSIIQLPLAIILGLLIGALTLVPYLKALALIPCGVMGL 273

Query: 271 I----KGNIFNATCL--FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           +     G  F +  L   +   +   I D  L P ++G    L        L      MG
Sbjct: 274 LQAAETGRNFGSILLGIAIVFTVIQVIEDMVLTPKIMGKVTGLNPAVILLSLSVWGSLMG 333

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKEN 352
           ++G+ I   +  L+   +K  ++  ++ 
Sbjct: 334 MVGMIIALPMTTLMISYYKRFVLNDEDE 361


>gi|94496502|ref|ZP_01303079.1| hypothetical protein SKA58_09926 [Sphingomonas sp. SKA58]
 gi|94424248|gb|EAT09272.1| hypothetical protein SKA58_09926 [Sphingomonas sp. SKA58]
          Length = 392

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/315 (15%), Positives = 115/315 (36%), Gaps = 13/315 (4%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           FF P+ +AL+I     P+      +    S   A+++ +  + +    L+ +        
Sbjct: 50  FFLPLTAALVIAIALVPLLEWMERR-GLPSGVAALLSVIGFLLVANTALVLIVVPATDWF 108

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             L  ++     +  PV    S++    +  E      + P +    +      + + F 
Sbjct: 109 SALPQRLPQIQANLAPVIDLYSNL--QRFVDETLQMLATGPVAAAQTAVVDAPRSLLQFA 166

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ-LDSLGEHLFPAYWKKISRIVP 208
              A           + ++F ++ ++FF      + ++ ++S G         ++ + V 
Sbjct: 167 ATSAPA-------AIIQMVFALLIIYFFLAGWTRLRRRTINSRGSFDGAMAVARVIQNVV 219

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI--SFTAVS 266
               +  + +  I +  GL +  A WL G+PS +  G I A++  +P   P+  +     
Sbjct: 220 DATSAYVITIATINLCLGLAVAVALWLIGMPSPLMWGGIIALLNFVPYFGPMLAAALLAL 279

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
             L++  +++ A            +    + P L+G  + +  L     L       G  
Sbjct: 280 GGLMVFDDVWFALLPAALQIAFHLVEANVVTPMLLGRRLTMNPLLILVSLTFWGWVWGTP 339

Query: 327 GLFIGPVLMALIAVI 341
           G  +G  L+ ++  +
Sbjct: 340 GALLGVPLLIILQTV 354


>gi|154243769|ref|YP_001409342.1| permease-like protein [Xanthobacter autotrophicus Py2]
 gi|154162891|gb|ABS70106.1| permease-like protein [Xanthobacter autotrophicus Py2]
          Length = 239

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 33/73 (45%)

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            +  +      L   G + +  +D  LRP LVG   +LP        VGG+  +G+ G  
Sbjct: 157 ALISDYLTGAILLAVGVLVISTIDNFLRPALVGRGRRLPDYVVLISTVGGLSLIGMNGFV 216

Query: 330 IGPVLMALIAVIW 342
           IGP++ AL    W
Sbjct: 217 IGPLIAALFVADW 229


>gi|291535177|emb|CBL08289.1| sporulation integral membrane protein YtvI [Roseburia intestinalis
           M50/1]
          Length = 368

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 116/335 (34%), Gaps = 16/335 (4%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L  F A    A+++             +       +AV   +    +  V L F   Y 
Sbjct: 37  VLFPFLAAFAVAVLLSGAV----QFIAERMHIQRGIVAVAVVLFFYIILAVFLYFAGSYL 92

Query: 86  MLEMKELVSKVVLANQHGIPVP-----RWLSDIPGGMWASEL-----WTKHLSHPQSLKI 135
           +  + +   ++ +     I        +WL       + +EL         +    +  +
Sbjct: 93  VRLIYDTARELSVFFSDTIVPVMQRFYQWLDRFVSVFYPTELTGKTSGLHGVGEESAQTL 152

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +   L +   D +    S        + + ++  +IA  F   +   I   L       
Sbjct: 153 KNAGKLMSGISDGVIDGVSGMAAGIPGFFMKLLIAVIATVFMELEFPEIKAFLKRQIPAE 212

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +   ++     V   +    L   +I       L +  +L G+ +  A+  I A++ ++P
Sbjct: 213 YQRAFRDGKNYVTGTMGKCILSYCLIFGMTFAELTAGLFLLGIKNAFAIAFIIAVLDILP 272

Query: 256 G-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G        ++     G I     +F    + + +V   + P LVG  + L  +    
Sbjct: 273 VLGTGTVLIPWAVLAFASGRISTGVGVFGLY-LVITVVRNLIEPKLVGKQMGLSPVIMLP 331

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            ++ G++  G++GLF+ P+L++ +  +    I+ I
Sbjct: 332 CMLIGLKFFGIIGLFVVPLLVSFLKQLNDRGIIKI 366


>gi|328885460|emb|CCA58699.1| putative membrane protein [Streptomyces venezuelae ATCC 10712]
          Length = 374

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/330 (13%), Positives = 109/330 (33%), Gaps = 14/330 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L G    +L A  +     P      ++          +   +V+   +  ++ L     
Sbjct: 29  LVGLLVNILLAFFLALAIEPAVGRMAAR-GMRRGLATFLVFFAVLIFGVGFVVLLGSMLA 87

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++ ++V       Q+   +  W+++     + ++L    +          + +++ +  
Sbjct: 88  GQIVDMVENFP---QYLDSLINWINE----NFHTDLSRVEVQDSVLSSEWLQKYVQNSAA 140

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +   A+  G +F    + +       F+F  DG  + + L S+          +   I
Sbjct: 141 GVLDVSATVLGGLFRLLTIFLF-----SFYFAADGPRLRRALCSVLPPARQTEVLRAWEI 195

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA-MIPGGAPISFTAV 265
                        ++A+  G+     + + GVP   AL V   +++  IP        A+
Sbjct: 196 AVDKTGGYLYSRGLMALISGVAHFVLFEILGVPYAPALAVWVGLVSQFIPTIGTYLAGAL 255

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            + +    N + A  +  +  +     +  L+P L    + +     F  ++ G   +G 
Sbjct: 256 PMLIAFTVNPWYALWVLGFVVVYQQFENYVLQPKLTSKTVDIHPAVAFGSVIAGTALLGA 315

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G  I    +A +       +       + 
Sbjct: 316 VGALIAIPAVATLQAFLGAYVKRYDVTDDP 345


>gi|291550167|emb|CBL26429.1| Predicted permease [Ruminococcus torques L2-14]
          Length = 467

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/390 (13%), Positives = 118/390 (30%), Gaps = 33/390 (8%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYF-------------LKGFFA---PVLSALIIGFTSW 45
           R      Q I    + F++   + F              K F     P++  L I +   
Sbjct: 35  RRYSFKEQAIKSMTLFFVVATCILFYFALLRLGQISSVFKQFLTVAKPIIYGLAIAYLLN 94

Query: 46  PIYSSFISKKEE---------------SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           PI      +                  S      ++ + ++ L I  L  +       ++
Sbjct: 95  PIVKWIDRRMIPLLEKHCPKLKKKKQISRGVGIFVSVILMLALIITLLNMMIPELYGSIR 154

Query: 91  ELVSKVVLANQHGIPVPRWL--SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           +++  V       I     +  SD   G   + +  +     Q+             +  
Sbjct: 155 DMIFTVPSQMNRFIHEFSKMHSSDSTVGKMLASIVEEASDFVQNWMKTDLMEKVNLWMTQ 214

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +     +      ++ + II  I  LF   +      + + ++          +I     
Sbjct: 215 LTVGMIQMVREVFNFIIGIIVSIYVLFSKEKFQKQTKKLIYAVFRPGQANMILQIGGKSN 274

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           ++     +G  I ++  G++      +  +P  + + VI  +  +IP   P      S  
Sbjct: 275 EIFGGFIIGKIIDSLIIGVICFIGLSILNMPYTMLVSVIVGVTNVIPFFGPYIGAIPSAI 334

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L++  +        ++           L P ++G    L      F ++      G+ G+
Sbjct: 335 LILLADPLKGLYFIIFVIALQQFDGNVLGPKILGNSTGLSSFWVVFSILIAGGLFGIPGM 394

Query: 329 FIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G    A+I  I    + +I + KE  + 
Sbjct: 395 LFGVPTFAVIYYIVNMLVNSILKKKELPTD 424


>gi|320008172|gb|ADW03022.1| protein of unknown function UPF0118 [Streptomyces flavogriseus ATCC
           33331]
          Length = 377

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 110/352 (31%), Gaps = 22/352 (6%)

Query: 13  RWMIMFIIL--------VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           R MI+ + L         + Y L G    +L A  +     P  S    +          
Sbjct: 7   RAMILALTLYGCFQLGSWAFYQLIGLLTNILIAFFLALAMEPAVSRMAGR-GIRRGLATF 65

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  ++V+   I  ++ L      ++ ++V +     ++   V  W++       +     
Sbjct: 66  LVFIAVLVAAIGFVVLLGSMLAGQIVDMVEEFP---KYLDSVINWVNQTFHTELSRVEVQ 122

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L H   L+   +                      L     ++ + +  F+F  DG  +
Sbjct: 123 DSLLHSDWLQRYVQNS---------ATGVLDVSTTVLGGLFRLLMIFLFSFYFAADGPRL 173

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + L S+      A   +   I             ++A+  G+       +  VP   AL
Sbjct: 174 RRALCSVLPPSRQAEVLRAWEIAVDKTGGYIYSRGLMALISGVAHYVLLVVLDVPYAPAL 233

Query: 245 GVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            V   +++  IP        A+ + +    + + A  +  +  +     +  L+P L   
Sbjct: 234 AVWVGLVSQFIPTIGTYLAGALPMLIAFTVDPWYALWVLGFVVVYQQFENYALQPKLTSK 293

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            + +     F  +V G   MG +G  I    +A +       +       + 
Sbjct: 294 TVDIHPAVAFGSVVAGTALMGAVGALIAIPAVATLQAFLGAYVKRYDVTDDP 345


>gi|332159160|ref|YP_004424439.1| hypothetical protein PNA2_1519 [Pyrococcus sp. NA2]
 gi|331034623|gb|AEC52435.1| hypothetical protein PNA2_1519 [Pyrococcus sp. NA2]
          Length = 326

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 61/346 (17%), Positives = 136/346 (39%), Gaps = 33/346 (9%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M     ++  + + II +++  +  FF+P+  A I  +   PI++    +    ++  A+
Sbjct: 1   MNMNDIVIGAVALIIIALAIKTIAPFFSPLFFAFITAYALTPIHAKLEKRIGSRNS--AI 58

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           + T  ++   ++ L+ L Y     + +  + +       I +P                 
Sbjct: 59  VLTSILLFGALMILVVLIYTLTPVISQAYNYLSNLENLTIEIP----------------- 101

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
              S+   L   +   L   G + +           L   + + F     FF  + G + 
Sbjct: 102 FIPSNIFELIKNATDKLIEVGKESLISVTFSVPKYLLQVVVYLAF---VYFFLTKMGEA- 157

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA---GVPSH 241
                            KI       +++      ++ I +G+++   + L     +P+ 
Sbjct: 158 -----KSLLTFEDEKLMKIISKGNLTLQALVRVWLLLNIAKGILMTLGFLLFRVSDIPTA 212

Query: 242 VALGVITAIMAMIPGG-APISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPF 299
           +  G++T + + +P     + +   S+YL+ +G++  A  L ++G   +  + D T+RP 
Sbjct: 213 ILAGLLTVLFSFVPLFEGWMIWLIGSLYLIREGHLLTAIGLAVYGFSLVSPLPDFTIRPK 272

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           LV    K   +    G++GG   +GL GL IGP+++ +   + KE 
Sbjct: 273 LVAREAKFNEVIVLIGMIGGTLGLGLKGLIIGPIVLNVALEMLKEW 318


>gi|253572141|ref|ZP_04849545.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251838321|gb|EES66408.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 377

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 64/334 (19%), Positives = 120/334 (35%), Gaps = 16/334 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L G   P   A +I +  +P+   F  K    S  +++   + ++ L  V L +L     
Sbjct: 31  LSGVLLPFFIAWLIAYMVYPLVKFFQYKLRLKSRIVSIFCALFLITLVGVSLFYLL---- 86

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
             +  +VS++   N   +      +        SE   +++      +ILSE  +     
Sbjct: 87  --VPPMVSEIGRMNDLLVTYLTNGAGNNVPKNLSEFIHENIDLQALNRILSEENILAAIK 144

Query: 147 DFIPRFASRFGM---IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           D +PR  +       I      S I ++  +F    D   I++    L  + +  +   +
Sbjct: 145 DTVPRVWALLAESLNILFSILASFIILLYVIFILL-DYEVIAEGWLHLLPNKYRTFASNL 203

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
              V   +   F G  ++A   G++    + +   P  +ALG+    + M+P    I F 
Sbjct: 204 VHDVQDGMNRYFRGQALVAFCVGILFSIGFLIIDFPMAIALGLFIGALNMVPYLQIIGFL 263

Query: 264 AVSIYLLI----KGNIFNATC--LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
              +  ++     G  F           AI   I D  L P ++G    L        L 
Sbjct: 264 PTVLLAILKAADTGENFWIIIACALAVFAIVQIIQDTFLVPKIMGKITGLNPAIILLSLS 323

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
                MG+LG+ I   L  L+   ++  I+  + 
Sbjct: 324 IWGSLMGMLGMIIALPLTTLMLSYYQRFIINKER 357


>gi|269955017|ref|YP_003324806.1| hypothetical protein Xcel_0209 [Xylanimonas cellulosilytica DSM
           15894]
 gi|269303698|gb|ACZ29248.1| protein of unknown function UPF0118 [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 399

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 110/335 (32%), Gaps = 18/335 (5%)

Query: 16  IMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           ++ +  V L  L+        V +A  +     P  S    +        A    +  + 
Sbjct: 32  LIALAAVVLQVLRAGSSLLFIVFTAWFVSLAMEPAVSRLARRMPRG---AATGVVMLGVL 88

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
            F+     LF   +++  ++ S V            ++    G  ++ +     +     
Sbjct: 89  GFVALFSALFGNLVVQ--QVTSLVETIPSLVDQALDYVDQQFGVRYSLDDLLAQVQQNAG 146

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                   +    + F+   A   G        +     + LF+   DG  + + + SL 
Sbjct: 147 SAASVAGTVAGGILSFVGALAGAVG--------TFFIFALLLFYLSADGPRLRRWIASLF 198

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                     +   + +          ++A   G +    + + G+PS +AL + T I+A
Sbjct: 199 PPRAQEATLVVWDTMAEKTGRYVGARLVLATVNGTLSAIVFAIIGLPSWLALALWTGIVA 258

Query: 253 -MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             IP  G  IS     +   +  N +    +  WG +   + + T  P +    + +   
Sbjct: 259 QFIPAIGTYISIALPVLVGALSPNPWLGLIVLGWGVLYQQVENLTFEPRISARAVNVNPA 318

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            +F  ++ G    G+ G  +   ++A++  +    
Sbjct: 319 VSFSSVILGTSMFGVAGALLAIPVVAMLLALLDLY 353


>gi|254523945|ref|ZP_05136000.1| permease [Stenotrophomonas sp. SKA14]
 gi|219721536|gb|EED40061.1| permease [Stenotrophomonas sp. SKA14]
          Length = 389

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/348 (14%), Positives = 130/348 (37%), Gaps = 16/348 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +   ++   ++ L     P + AL + +   P+     +                V+ +
Sbjct: 19  ILFAGLVGWVVWLLAPILTPFVLALALAWLGDPLVDRIEATGRSR--------MTGVVLV 70

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL--SDIPGGMWASELWTKHLSHPQ 131
           F   +L +    ++ +  +  ++            WL    IP     + L       P 
Sbjct: 71  FAAMVLVIVALLLVLVPMIERQITTLIAVAPQAQAWLMEKGIPWFEQKTGLEVMQWLDPD 130

Query: 132 SLKILSETFLKTNGI--DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            L     +  +  G        + SR G   + + ++I+ + I  F+F RD   + +++ 
Sbjct: 131 RLIEWVRSHWQQAGGFATTFMGYVSRSGFAMVTWVVNILLLPILAFYFLRDWDKLVERVA 190

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           S+           ++R   +V+ +   G  ++ +  G++      L G+   + +G+I  
Sbjct: 191 SVIPRNHIGTISALARESNEVLGAFIRGQFLVMLALGVIYAGGLSLVGLKLGLLIGLIAG 250

Query: 250 IMAMIP---GGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +++ IP       I    V+  +  +G ++     + +   +   +    L P +VG  I
Sbjct: 251 LISFIPYLGATTGILMAVVAALVQAQGFDLKLLILVGVVFTVGQLLESYVLTPRIVGDKI 310

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L  +   F ++ G +  G LG+ +   + A+  V+ + +    ++++
Sbjct: 311 GLHPVAVIFAVMAGGQLFGFLGMLLALPVAAVTNVLLRYAHQRYRQSE 358


>gi|161612754|ref|YP_001586719.1| hypothetical protein SPAB_00453 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161362118|gb|ABX65886.1| hypothetical protein SPAB_00453 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 352

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/347 (14%), Positives = 115/347 (33%), Gaps = 14/347 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +P+ I   +I+      L+F  G  AP+L A+++ +   WP  +   +       
Sbjct: 7   RRRFSDPEAIALLVILVAGFSILFFFSGLLAPLLVAIVLAYLLEWP-TARLQAIGCSRRW 65

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             +++  + V  L ++  + +       +  +     + N+            P  M A 
Sbjct: 66  AASIVLILFVGILLLMAFVVMPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 125

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +     +    +  + ++ +K +    +           L   + ++ + + +FF  +D
Sbjct: 126 IIDAMAENMRTRMLNMGDSVVKYSLASLV---------GLLTLAVYLVLVPLMVFFLVKD 176

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +          ++   + + I +   G  +  +  G+     + L G+  
Sbjct: 177 KEQMLNAVRRVLPRNRGLAG-QVWNEMNQQITNYIRGKVLEMVVVGVATWLGFLLFGLNY 235

Query: 241 HVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V+     +IP  GA +    V  + L   G        F    I   +    L P
Sbjct: 236 SLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGLGTEFWSCFAVYLIIQALDGNLLVP 295

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L    + L  L     +V      G  G+F    L  LI  +    
Sbjct: 296 VLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVHAW 342


>gi|313885148|ref|ZP_07818900.1| putative membrane protein [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619839|gb|EFR31276.1| putative membrane protein [Eremococcus coleocola ACS-139-V-Col8]
          Length = 421

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 112/325 (34%), Gaps = 4/325 (1%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F  P+++A I+ +   P+      +  E +  + ++    V+ +    L  L      + 
Sbjct: 56  FGLPLIAAAILYYLLAPVVRWMTGQGIERNVSIWILFISLVLLIVWGILS-LVPILRTQF 114

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           + L   +    +    +   L  IP       L +   S  +     + +      I   
Sbjct: 115 QGLAENLPYYAKQLDKL---LDTIPIDWSNDPLLSGIGSFVEDFDFSALSSRMETIISTT 171

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                          L ++ M I L++   +G  + + +     + +     +I      
Sbjct: 172 FGSLGTVIGNITQVVLGLLTMPIVLYYMLLEGNKLPKHVLYYLPNRYRETAARIIYESHS 231

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            I     G  I+AI   ++    Y + G+   ++  +      +IP           I +
Sbjct: 232 QISRYIRGQIIVAIIVAIIFAVGYSIIGLDYGISFAIFAGFCNVIPYLGSFIAVIPVIII 291

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            +  +      + +  +IE FI  + + P ++G  +++  +     L+G  R  G+ G+ 
Sbjct: 292 AVLTSPLMLLKVLIVMSIEQFIEGRFVSPQILGSNLQIHPVTILVVLLGAGRLFGIAGVI 351

Query: 330 IGPVLMALIAVIWKESIMAIKENKE 354
           +G    A++ V   E     + + E
Sbjct: 352 LGVPGYAVVKVFVSELYQVYRNHSE 376


>gi|115374275|ref|ZP_01461560.1| hypothetical protein STIAU_0634 [Stigmatella aurantiaca DW4/3-1]
 gi|310818211|ref|YP_003950569.1| hypothetical protein STAUR_0938 [Stigmatella aurantiaca DW4/3-1]
 gi|115368696|gb|EAU67646.1| hypothetical protein STIAU_0634 [Stigmatella aurantiaca DW4/3-1]
 gi|309391283|gb|ADO68742.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 375

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 98/303 (32%), Gaps = 17/303 (5%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
           ++ +K         +  ++ + L    L       + + + LV +           P ++
Sbjct: 59  WLQRKGLRRGVAVALVFLTGLGLVAALLTTFVPMLVQQGQSLVREA----------PDYI 108

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
             +    W  +L  ++    +      +                      L +  + I +
Sbjct: 109 EQLKHQRWVEQLDARYDLIARVSAETRQRLPGAAMPML------GVVTDILHHLAAFITV 162

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           ++   FF   G  +  +           YW+ ++  +   + S   G   I++  G V  
Sbjct: 163 VVLTLFFLCFGKEVFDKALLWLPPPERGYWRGLALRMHHTVGSYVAGAFCISLIGGGVTM 222

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
               L GVP  V LG+  A++ ++P  G  +    V       G             +  
Sbjct: 223 VTLLLLGVPYFVPLGLAMAVLGLVPFLGPLLGGVLVVATAYASGGNRVGLIALGVFLLYQ 282

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            + +  L+P +    +++  L     ++ G    G+LG  +   +   + V+ ++ +   
Sbjct: 283 QVENHLLQPIIQRHTLRMSPLLIALAMLVGTAFAGVLGALLALPVAGAVQVVAQDRLARR 342

Query: 350 KEN 352
            E 
Sbjct: 343 HER 345


>gi|296535051|ref|ZP_06897315.1| possible permease [Roseomonas cervicalis ATCC 49957]
 gi|296264622|gb|EFH10983.1| possible permease [Roseomonas cervicalis ATCC 49957]
          Length = 370

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 114/326 (34%), Gaps = 9/326 (2%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P + A  I +   P+ +   S+        A++    +M L ++ LL L+   + ++ 
Sbjct: 41  LTPFVLAACIAYFLDPLATRL-SRLGVPRGLAALVLVTGLMGLALLALLLLYPLIIAQVG 99

Query: 91  ELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
            L++++   A      +   L+ +          T+      S      +FL       I
Sbjct: 100 TLLARLPSYAAGIASALQEALAGLEERFGPEVFDTRLRDLAVSQIGAILSFLGAAATRLI 159

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                  G         ++   +  F+  RD   I  +L+S       A  ++++R   +
Sbjct: 160 GG-----GYALFSVFTLVVVTPVVAFYLLRDWPRIMLRLESWLPRRSAAVLRQLARDTDR 214

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
           V+ +   G  +                G+   + +G+ + +++ IP     +  A ++ L
Sbjct: 215 VLSAWLRGQLLCCALLAAYYAVGLSAVGLELGLMVGLASGLLSFIPYVGSATGLATALLL 274

Query: 270 LIK--GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            +   G       +         I    + P L+G  ++L  +   F L  G    G LG
Sbjct: 275 AVGQFGTWDGVGLVAAVYVAGQTIEGYIIYPRLLGDRVELHAVWVIFALFAGGVAFGFLG 334

Query: 328 LFIGPVLMALIAVIWKESIMAIKENK 353
           + +   + A + V+ +  +    E+ 
Sbjct: 335 VLLAVPMAAALGVLARYWLRRYLESP 360


>gi|160947670|ref|ZP_02094837.1| hypothetical protein PEPMIC_01605 [Parvimonas micra ATCC 33270]
 gi|158446804|gb|EDP23799.1| hypothetical protein PEPMIC_01605 [Parvimonas micra ATCC 33270]
          Length = 400

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/340 (15%), Positives = 127/340 (37%), Gaps = 4/340 (1%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +    M  +  +   L+      L++++I +   P    F  K  +    + +I  +  +
Sbjct: 56  LSVFFMIFLFKNYSILRITLVTFLASVVIAYILNPFMKFFERKNIKRIYAIILIYIIIAL 115

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +F++  + +F     + K L+  +    ++ +     +         +      +S   
Sbjct: 116 AIFVL-GIGIFPSTFKQFKHLLFSLPDLVKNFVDYSDSIRK--SLFTDTPFINNMISSIN 172

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              +     L ++   ++    +     F+   + +I + +  F+   +   I + +   
Sbjct: 173 GQLVKIANTLLSSSASWVTGMVAGI-SGFIAVIIQLILIPVITFYLLLEKDKILEAISKR 231

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +  +  +I R + + +     G  I+AI  G+       L G+     +GVIT + 
Sbjct: 232 VPDRYENFLVRIWREIDESLSMFVRGRIIMAIFVGVATMIYLMLFGIEFSFVIGVITCVA 291

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP   P      ++ L +    F A  + +      ++ +  L P ++G    +  L 
Sbjct: 292 DIIPYIGPFLGFVPAVLLALFKGPFTAFWVAVLFCFVQWLENNILGPKILGDSTGMHPLI 351

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
               L+ G    G+LG+     + A+I +I+K +   +K+
Sbjct: 352 VLILLIIGGGMFGVLGMIFSVPVAAVIKIIYKHTKPYVKK 391


>gi|260757693|ref|ZP_05870041.1| LOW QUALITY PROTEIN: DUF20 domain-containing protein [Brucella
           abortus bv. 4 str. 292]
 gi|260668011|gb|EEX54951.1| LOW QUALITY PROTEIN: DUF20 domain-containing protein [Brucella
           abortus bv. 4 str. 292]
          Length = 382

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/326 (14%), Positives = 111/326 (34%), Gaps = 20/326 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G M + ++F+++ S   L     P ++ + + +   P+      K   S    +++  + 
Sbjct: 20  GAMAFFVLFLVVFSSVLL-----PFVAGMALAYFLDPVADRLE-KVGLSRLAASIVILLI 73

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + + I+ L+ +      ++ + +S +         +             SE   K++  
Sbjct: 74  FLMILIIGLMIVVPILATQLADFISNLPGYITQLQSLLA--------NRDSEWLKKYIGI 125

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
             ++   + + L   G  F+          G   +D     +   +  F+   D   +  
Sbjct: 126 DSTVIQQNLSSLLQQGAGFLSTLLQSLWNSGKSLIDIAGLFVVTPVVAFYMLLDWDRMVN 185

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +DS          ++I+R +   +     G   + +  G        L G+   + +G 
Sbjct: 186 SIDSWVPRKQLHTVRRIAREMNAAVAGFIRGQGTLCLILGTYYAIGLTLTGLNFGLLIGF 245

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
              +++ IP        A++I + +     +      +     +  FI    L+P LVG 
Sbjct: 246 FAGLISFIPYIGSFVGLALAIGVALVQFWPDWIMVCTVAAVFFLGQFIEGNILQPKLVGS 305

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLF 329
            + L  +   F L       G  G+ 
Sbjct: 306 SVGLHPVWLMFALFAFGSLFGFTGML 331


>gi|254718848|ref|ZP_05180659.1| hypothetical protein Bru83_04800 [Brucella sp. 83/13]
 gi|265983833|ref|ZP_06096568.1| permease [Brucella sp. 83/13]
 gi|264662425|gb|EEZ32686.1| permease [Brucella sp. 83/13]
          Length = 382

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/326 (14%), Positives = 111/326 (34%), Gaps = 20/326 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G M + ++F+++ S   L     P ++ + + +   P+      K   S    +++  + 
Sbjct: 20  GAMAFFVLFLVVFSSVLL-----PFVAGMALAYFLDPVADRLE-KVGLSRLAASIVILLI 73

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + + I+ L+ +      ++ + +S +         +             SE   K++  
Sbjct: 74  FLMILIIGLMIVVPILATQLADFISNLPGYITQLQSLLA--------NRDSEWLKKYIGI 125

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
             ++   + + L   G  F+          G   +D     +   +  F+   D   +  
Sbjct: 126 DSTVIQQNLSSLLQQGAGFLSTLLQSLWNSGKSLIDIAGLFVVTPVVAFYMLLDWDRMVN 185

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +DS          ++I+R +   +     G   + +  G        L G+   + +G 
Sbjct: 186 SIDSWVPRKQLHTVRRIAREMNAAVAGFIRGQGTLCLILGTYYAIGLTLTGLNFGLLIGF 245

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
              +++ IP        A++I + +     +      +     +  FI    L+P LVG 
Sbjct: 246 FAGLISFIPYIGSFVGLALAIGVALVQFWPDWIMVCTVAAVFFLGQFIEGNILQPKLVGS 305

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLF 329
            + L  +   F L       G  G+ 
Sbjct: 306 SVGLHPVWLMFALFAFGSLFGFTGML 331


>gi|148379812|ref|YP_001254353.1| hypothetical protein CBO1852 [Clostridium botulinum A str. ATCC
           3502]
 gi|168180430|ref|ZP_02615094.1| putative membrane protein [Clostridium botulinum NCTC 2916]
 gi|226949096|ref|YP_002804187.1| hypothetical protein CLM_2012 [Clostridium botulinum A2 str. Kyoto]
 gi|148289296|emb|CAL83392.1| putative membrane protein [Clostridium botulinum A str. ATCC 3502]
 gi|182668893|gb|EDT80871.1| putative membrane protein [Clostridium botulinum NCTC 2916]
 gi|226842378|gb|ACO85044.1| putative membrane protein [Clostridium botulinum A2 str. Kyoto]
          Length = 364

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/320 (16%), Positives = 113/320 (35%), Gaps = 9/320 (2%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P + A  I +   P+   F +K +    F  +I  + V+ L I+ +       +  + 
Sbjct: 43  LVPFIWAFGIAYILNPLMKYFQNKFKLKRIFSIIITYIIVIGLLILFINTFVPKIIKNIG 102

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           +L           I   +W +D        ++  ++     ++  L      +N  +   
Sbjct: 103 DLFVHSPDYINQTI---QWFNDNIKYSKVYDMLMENYQISNNIPNLLNKI--SNLTNTFL 157

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK----KISRI 206
                  + F  + +  +F +I   +   D  S+ + L      L             + 
Sbjct: 158 NTFLNTTIKFTSFLVRFVFGLIISIYLLLDKESLIENLKKFILALSGEKNYSKILSFFKE 217

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           V  V     +G +I ++  GL+  +   +  VP    +  I  I  MIP   P      +
Sbjct: 218 VDIVFSKYIIGKSIDSLIIGLMCFAGLTIMKVPYAALISFIVGITNMIPYFGPFIGMIPA 277

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
             + +  N   A  + ++  I        L P ++G  + L  +   F +  G  T G++
Sbjct: 278 FIITLFFNYIKAIWVLIFIIILQQFDGWYLGPKILGNQVGLSPIWIIFAITIGGGTFGVM 337

Query: 327 GLFIGPVLMALIAVIWKESI 346
           G+F+   + A+I +   + I
Sbjct: 338 GMFLSVPIAAIIKIYLDKYI 357


>gi|153213247|ref|ZP_01948659.1| permease PerM, putative [Vibrio cholerae 1587]
 gi|124116047|gb|EAY34867.1| permease PerM, putative [Vibrio cholerae 1587]
          Length = 354

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 56/349 (16%), Positives = 121/349 (34%), Gaps = 14/349 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P       I+    +++YF     AP+L A+++ +   WP+    + +     T   +I
Sbjct: 15  DPHAASLVAILLFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQ--LRRLRIPRTLAVII 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
                  L I+ +  L      ++  L++ V           ++++ +P           
Sbjct: 73  VITVFTGLMILAVFGLVPTIWKQVGNLINDVPNMYNGTQ---KFITSLPE----RYPELA 125

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           HL   +S+   ++  +   G   +    +   +      + +I + + +FF  +D   + 
Sbjct: 126 HLEIVESVISNAKNKVLGMGESVVKGSLASL-VSLATLGVYLILVPLLVFFLLKDKQEML 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +          K+   + + I +   G  +  +  G V    + +  +   V L 
Sbjct: 185 RMASGILPR-NRKLANKVWEEMNQQISNYIRGKVLEIVIVGTVSYITFAILDLRYSVLLA 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V   +  +IP  GA      V+I  L + G       L +   I   +    L P L   
Sbjct: 244 VAVGLSVLIPYIGAAAVTVPVAIVALFQWGLTPQFYTLLIAYGIIQALDGNVLVPVLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            + L  +     ++      G  G+F    L  L+  +WK      +E 
Sbjct: 304 AVNLHPVAIIIAVLVFGGLWGFWGVFFAIPLATLVKAVWKALPSIDEEP 352


>gi|147677594|ref|YP_001211809.1| permease [Pelotomaculum thermopropionicum SI]
 gi|146273691|dbj|BAF59440.1| predicted permease [Pelotomaculum thermopropionicum SI]
          Length = 351

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 55/335 (16%), Positives = 117/335 (34%), Gaps = 4/335 (1%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             +++++  ++     P L A +      PI      K   S     + A V       V
Sbjct: 18  AVVVIIAFNYILPILVPFLIAFVFSVLMEPIIRVLEQKARFSRGPATMAAMVLFFGGIAV 77

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
               L    + E+ +L   +  A        +   +     + S       S  Q++  L
Sbjct: 78  VFSVLVLQLVAELIQLSLSLPAAAAEFRNYYQVFIEKITAFYISLPPGVISSIEQNISTL 137

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           +++      +  +      F  +       ++  IIA +F  RD + I + L  +    +
Sbjct: 138 TDSL--QGLVSRMANSLMMFVSLVPGTLTVLVVSIIATYFLARDRYLIIKFLMRVFPSPW 195

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                 + + +            ++ +   ++  +  +L G    + +G++     +IP 
Sbjct: 196 GEKAVAVIQDMSAAFIGYLRAQAVLVLITTVLSVTGLYLIGAKYALTIGLLVGFFDLIPV 255

Query: 257 -GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G    +    I+  + G       + +   I L +  + L   +V   + L  L T   
Sbjct: 256 LGPATVYIPWVIWSFVTGATAFGVKIAVLYLIVL-LTRQFLETKIVSANLGLHPLATLIA 314

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +  G++TMG+ GL +GPVL+  +  I K      K
Sbjct: 315 MYAGLKTMGISGLIMGPVLLIALQSIVKTVFFTSK 349


>gi|76801133|ref|YP_326141.1| permease [Natronomonas pharaonis DSM 2160]
 gi|76556998|emb|CAI48572.1| homolog to predicted permease [Natronomonas pharaonis DSM 2160]
          Length = 331

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/339 (14%), Positives = 126/339 (37%), Gaps = 25/339 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
            ++ + + ++  ++  I +++   L      V  A+ + +  +P     +++        
Sbjct: 2   SSLRHRRYVLGGLLAAIGVLAAAVLWNVVGTVFFAVTVAYVLYPARQRLVNRGVPRR-VA 60

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           + + T +     +V L  + +    +   ++               +L+++P  +     
Sbjct: 61  SGLLTAAAFLTVVVLLAPIAWTIFRQRGAIL--------------EFLNNLPDELPVEAF 106

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                     L             D +   A       +   L ++   + L+       
Sbjct: 107 GFVVTIDVADLVD--------TTADTLQSIAISLAADAIFLALQLLMFALVLYGLLLRPN 158

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           ++ +    +    +      + R +   + + ++     A+    +    ++L G P   
Sbjct: 159 AVGRAAFRVTPSPYHDILVALHRRIAGTLYALYVIQAATAVITFPLALIVFYLLGYPDVF 218

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFL 300
            L V+ A++  IP  G  +    ++ + ++ G    A  + + G + + ++ D  +RP L
Sbjct: 219 VLAVLAALLQFIPIVGPGMLAAGLAGHDVLVGMPHRAVGVIILGPLFVGLLPDLLVRPRL 278

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
                KLP    F G VGGV T+G++G+  GP+++AL+ 
Sbjct: 279 AASKAKLPASLYFVGFVGGVLTVGVIGIIAGPLVVALLV 317


>gi|160885072|ref|ZP_02066075.1| hypothetical protein BACOVA_03070 [Bacteroides ovatus ATCC 8483]
 gi|156109422|gb|EDO11167.1| hypothetical protein BACOVA_03070 [Bacteroides ovatus ATCC 8483]
          Length = 374

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 61/334 (18%), Positives = 123/334 (36%), Gaps = 16/334 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L G   P   A +I +  +P+   F  K    S  +++  ++ ++ +  V L +L     
Sbjct: 31  LSGVLLPFFIAWLIAYMVYPLVKFFQYKLRLKSRIISIFCSLFLITVIGVTLFYLL---- 86

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
             +  ++S++   N   +      +        SE   +++      ++LSE  +     
Sbjct: 87  --VPPMISEIGRMNDLLVTYLTNGAGNNVPKNLSEFIHENIDLQALNRVLSEENILAAIK 144

Query: 147 DFIPR---FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           D +PR     +    I      S I ++  +F    D  +I++    L  + +  +   +
Sbjct: 145 DTVPRVWTLLAESLNILFSILASFIILLYVIFILL-DYEAIAEGWLHLLPNKYRTFASNL 203

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
              V   +   F G  ++A   G++    + +   P  +ALG+    + M+P    I F 
Sbjct: 204 VHDVQDGMNRYFRGQALVAFCVGILFSIGFLIIDFPMAIALGLFIGALNMVPYLQIIGFL 263

Query: 264 AVSIYLLI----KGNIFNATC--LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
              +  ++     G  F           AI   I D  L P ++G    L        L 
Sbjct: 264 PTILLAILKAADTGQNFWIIIACALAVFAIVQIIQDTFLVPKIMGKITGLNPAIILLSLS 323

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
                MG+LG+ I   L  L+   ++  I+  ++
Sbjct: 324 IWGSLMGMLGMIIALPLTTLMLSYYQRFIINKEK 357


>gi|56962071|ref|YP_173794.1| hypothetical protein ABC0291 [Bacillus clausii KSM-K16]
 gi|56908306|dbj|BAD62833.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
          Length = 364

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/339 (14%), Positives = 112/339 (33%), Gaps = 12/339 (3%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           ++ FI +      +  F P++ +L+I +   P  +    K         +I  +++  L 
Sbjct: 25  LVNFIFMPIAVLFQTLFTPIVISLVIYYLLRPFVNLLNKKL--HRGLSILIVFLALAGLA 82

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
              LL++      +    V  V             L  +   +         L       
Sbjct: 83  TTALLYVGPLLQEQFMTFVDNVPGYAND-------LHHLFVDLQKQPALQNFLESTDFSL 135

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI---IALFFFYRDGFSISQQLDSL 191
                 L  N   ++       G         +I  +     LF+  ++G      + + 
Sbjct: 136 DELSGTLTENLQGYLQSIIDSIGTFIGAVANVVIIAVIIPFVLFYMLKEGKKAPMMVINQ 195

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                    K++   + K + S   G  +++   G++    Y +  +   + L ++    
Sbjct: 196 FPAREQEEGKRVLGDLDKALSSYIQGQILVSACVGVLCLIWYLIIKLDYALILALVALFT 255

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP   P   TA ++ + +  +   A  + +   I   I      P ++G  + +  L 
Sbjct: 256 NVIPFIGPWIGTAPAVIVALFDSPGKAFLVIVGVVIIQQIESNVFSPQIMGRQLSVHPLT 315

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             F L+   +  G +G+ +     A+  VI + +   I+
Sbjct: 316 IIFVLLVASQLAGFVGILLAVPAYAVSKVIVQHTYRLIR 354


>gi|254713835|ref|ZP_05175646.1| hypothetical protein BcetM6_10870 [Brucella ceti M644/93/1]
 gi|254717107|ref|ZP_05178918.1| hypothetical protein BcetM_11925 [Brucella ceti M13/05/1]
 gi|261218920|ref|ZP_05933201.1| permease [Brucella ceti M13/05/1]
 gi|261321581|ref|ZP_05960778.1| permease [Brucella ceti M644/93/1]
 gi|260924009|gb|EEX90577.1| permease [Brucella ceti M13/05/1]
 gi|261294271|gb|EEX97767.1| permease [Brucella ceti M644/93/1]
          Length = 382

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/326 (14%), Positives = 111/326 (34%), Gaps = 20/326 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G M + ++F+++ S   L     P ++ + + +   P+      K   S    +++  + 
Sbjct: 20  GAMAFFVLFLVVFSSVLL-----PFVAGMALAYFLDPVADRLE-KVGLSRLAASIVILLI 73

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + + I+ L+ +      ++ + +S +         +             SE   K++  
Sbjct: 74  FLMILIIGLMIVVPILATQLADFISNLPGYITQLQSLLA--------NRDSEWLKKYIGI 125

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
             ++   + + L   G  F+          G   +D     +   +  F+   D   +  
Sbjct: 126 DSTVIQQNLSSLLQQGAGFLSTLLQSLWNSGKSLIDIAGLFVVTPVVAFYMLLDWDRMVN 185

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +DS          ++I+R +   +     G   + +  G        L G+   + +G 
Sbjct: 186 SIDSWVPRKQLHTVRRIAREMNAAVAGFIRGQGTLCLILGTYYAIGLTLTGLNFGLLIGF 245

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
              +++ IP        A++I + +     +      +     +  FI    L+P LVG 
Sbjct: 246 FAGLISFIPYIGSFVGLALAIGVALVQFWPDWIMVCTVAAVFFLGQFIEGNILQPKLVGS 305

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLF 329
            + L  +   F L       G  G+ 
Sbjct: 306 SVGLHPVWLMFALFAFGSLFGFTGML 331


>gi|17987522|ref|NP_540156.1| permease [Brucella melitensis bv. 1 str. 16M]
 gi|23501600|ref|NP_697727.1| permease [Brucella suis 1330]
 gi|161618683|ref|YP_001592570.1| hypothetical protein BCAN_A0726 [Brucella canis ATCC 23365]
 gi|163842985|ref|YP_001627389.1| hypothetical protein BSUIS_A0744 [Brucella suis ATCC 23445]
 gi|225852233|ref|YP_002732466.1| hypothetical protein BMEA_A0750 [Brucella melitensis ATCC 23457]
 gi|254693464|ref|ZP_05155292.1| hypothetical protein Babob3T_02119 [Brucella abortus bv. 3 str.
           Tulya]
 gi|254701494|ref|ZP_05163322.1| hypothetical protein Bsuib55_11631 [Brucella suis bv. 5 str. 513]
 gi|254704041|ref|ZP_05165869.1| hypothetical protein Bsuib36_08949 [Brucella suis bv. 3 str. 686]
 gi|254707057|ref|ZP_05168885.1| hypothetical protein BpinM_08751 [Brucella pinnipedialis
           M163/99/10]
 gi|254709833|ref|ZP_05171644.1| hypothetical protein BpinB_06086 [Brucella pinnipedialis B2/94]
 gi|256031323|ref|ZP_05444937.1| hypothetical protein BpinM2_11838 [Brucella pinnipedialis
           M292/94/1]
 gi|256044404|ref|ZP_05447308.1| hypothetical protein Bmelb1R_07888 [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256060836|ref|ZP_05450996.1| hypothetical protein Bneo5_10797 [Brucella neotomae 5K33]
 gi|256113247|ref|ZP_05454115.1| hypothetical protein Bmelb3E_11062 [Brucella melitensis bv. 3 str.
           Ether]
 gi|256159443|ref|ZP_05457215.1| hypothetical protein BcetM4_10813 [Brucella ceti M490/95/1]
 gi|260168461|ref|ZP_05755272.1| hypothetical protein BruF5_08853 [Brucella sp. F5/99]
 gi|261213720|ref|ZP_05928001.1| permease [Brucella abortus bv. 3 str. Tulya]
 gi|261314525|ref|ZP_05953722.1| permease [Brucella pinnipedialis M163/99/10]
 gi|261317372|ref|ZP_05956569.1| permease [Brucella pinnipedialis B2/94]
 gi|261324829|ref|ZP_05964026.1| permease [Brucella neotomae 5K33]
 gi|261752039|ref|ZP_05995748.1| permease [Brucella suis bv. 5 str. 513]
 gi|261754698|ref|ZP_05998407.1| permease [Brucella suis bv. 3 str. 686]
 gi|265988409|ref|ZP_06100966.1| permease [Brucella pinnipedialis M292/94/1]
 gi|265990824|ref|ZP_06103381.1| permease [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994658|ref|ZP_06107215.1| permease [Brucella melitensis bv. 3 str. Ether]
 gi|265997875|ref|ZP_06110432.1| permease [Brucella ceti M490/95/1]
 gi|17983223|gb|AAL52420.1| permease [Brucella melitensis bv. 1 str. 16M]
 gi|23347515|gb|AAN29642.1| permease, putative [Brucella suis 1330]
 gi|161335494|gb|ABX61799.1| protein of unknown function [Brucella canis ATCC 23365]
 gi|163673708|gb|ABY37819.1| Hypothetical protein BSUIS_A0744 [Brucella suis ATCC 23445]
 gi|225640598|gb|ACO00512.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
 gi|260915327|gb|EEX82188.1| permease [Brucella abortus bv. 3 str. Tulya]
 gi|261296595|gb|EEY00092.1| permease [Brucella pinnipedialis B2/94]
 gi|261300809|gb|EEY04306.1| permease [Brucella neotomae 5K33]
 gi|261303551|gb|EEY07048.1| permease [Brucella pinnipedialis M163/99/10]
 gi|261741792|gb|EEY29718.1| permease [Brucella suis bv. 5 str. 513]
 gi|261744451|gb|EEY32377.1| permease [Brucella suis bv. 3 str. 686]
 gi|262552343|gb|EEZ08333.1| permease [Brucella ceti M490/95/1]
 gi|262765771|gb|EEZ11560.1| permease [Brucella melitensis bv. 3 str. Ether]
 gi|263001608|gb|EEZ14183.1| permease [Brucella melitensis bv. 1 str. Rev.1]
 gi|264660606|gb|EEZ30867.1| permease [Brucella pinnipedialis M292/94/1]
          Length = 382

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/326 (14%), Positives = 111/326 (34%), Gaps = 20/326 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G M + ++F+++ S   L     P ++ + + +   P+      K   S    +++  + 
Sbjct: 20  GAMAFFVLFLVVFSSVLL-----PFVAGMALAYFLDPVADRLE-KVGLSRLAASIVILLI 73

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + + I+ L+ +      ++ + +S +         +             SE   K++  
Sbjct: 74  FLMILIIGLMIVVPILATQLADFISNLPGYITQLQSLLA--------NRDSEWLKKYIGI 125

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
             ++   + + L   G  F+          G   +D     +   +  F+   D   +  
Sbjct: 126 DSTVIQQNLSSLLQQGAGFLSTLLQSLWNSGKSLIDIAGLFVVTPVVAFYMLLDWDRMVN 185

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +DS          ++I+R +   +     G   + +  G        L G+   + +G 
Sbjct: 186 SIDSWVPRKQLHTVRRIAREMNAAVAGFIRGQGTLCLILGTYYAIGLTLTGLNFGLLIGF 245

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
              +++ IP        A++I + +     +      +     +  FI    L+P LVG 
Sbjct: 246 FAGLISFIPYIGSFVGLALAIGVALVQFWPDWIMVCTVAAVFFLGQFIEGNILQPKLVGS 305

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLF 329
            + L  +   F L       G  G+ 
Sbjct: 306 SVGLHPVWLMFALFAFGSLFGFTGML 331


>gi|257438013|ref|ZP_05613768.1| putative permease [Faecalibacterium prausnitzii A2-165]
 gi|257199673|gb|EEU97957.1| putative permease [Faecalibacterium prausnitzii A2-165]
          Length = 398

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/327 (14%), Positives = 112/327 (34%), Gaps = 13/327 (3%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEES--------STFLAVIATVSVMCLFIVPLLFLFYY 84
           P      I F      S    K                  I+ +  + L    ++ + + 
Sbjct: 37  PFALGGAIAFVINVPMSFLEKKMLGKIKENNKIGKKAARPISLLLTIILVAGVIILVMFG 96

Query: 85  GMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMW-ASELWTKHLSHPQSLKILSETFLK 142
            + ++ + +  ++ +    IP  + W+ +         +L  +    P        + L 
Sbjct: 97  VIPQLTQTMGNLMTSISDFIPQMQNWIREFSHDNQDIMKLVDQLQFQPDQAIKWGISLLG 156

Query: 143 TNGIDFIPRFASRFGMI---FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
               + +    S  G I      + +S  F    LF   +    + + + +         
Sbjct: 157 NGVGNMMNTTMSAVGSIASGLATFFISFSFACYILFQKEKLHLQVRKVIFAFIPKQKADA 216

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
              I  +  +   +   G  + A+  G++      +  +P  + +G++ A  A++P    
Sbjct: 217 ILNICSLTYRTFANFLAGQCLEAVILGMMFVITLSILKMPYALLIGILIAFTALVPIFGA 276

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
               AV  +L+   N   A    +   +   I    + P +VGG + LP +     +  G
Sbjct: 277 FIGCAVGSFLIFMVNPKQAVLFIIVFLLLQQIEGNLIYPHVVGGSVGLPSIWVLAAVTIG 336

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESI 346
              MG++G+ I   L+++   I++E +
Sbjct: 337 GNLMGIIGMLIFIPLVSVFYTIFREFV 363


>gi|229828723|ref|ZP_04454792.1| hypothetical protein GCWU000342_00789 [Shuttleworthia satelles DSM
           14600]
 gi|229793317|gb|EEP29431.1| hypothetical protein GCWU000342_00789 [Shuttleworthia satelles DSM
           14600]
          Length = 418

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/321 (15%), Positives = 120/321 (37%), Gaps = 6/321 (1%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEES------STFLAVIATVSVMCLFIVPLLFLFYYGM 86
           PVL  L+I +   P+ + F  K           T      T +++ + ++ +L +     
Sbjct: 48  PVLLGLVIAYVLHPLVNVFERKVFSRMKHFRPKTRHVFSVTATILVVLLLIVLLMIALIP 107

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
             +  +V  +  A  +   + + ++     +  +     +LS      +   T L  +  
Sbjct: 108 QLIGSVVRFLQNAGDYIASLQKLIALAVDALRQNGRDVSNLSDMIKEGLDGLTNLLPSQP 167

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +  F +  G+   D+ + II  I  L    R    + Q +  L         +  ++ 
Sbjct: 168 SQLLHFVTNIGVGVFDWVIGIIMAIYFLMDMERWMGGLRQLMGLLLSRQRYRELRDFAKR 227

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
             +++     G  +  +           +  +P  V L ++  +  + P   PI   A+ 
Sbjct: 228 SDRILIRYIGGTILDGLIVAFANFIFMMIMQMPYAVLLSLVVGVTNLAPTFGPILGGAIG 287

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
             +L+  N ++A    ++  I   I    ++P L G  + +  +     ++ G +  G++
Sbjct: 288 SLILLLINPWHALWFLIFTIILQTIDGYVIKPRLFGNTLGVAGIWILICIIVGGKAFGVI 347

Query: 327 GLFIGPVLMALIAVIWKESIM 347
           G+ +     A+   +++ESI+
Sbjct: 348 GILLAIPFAAISDFVYRESIL 368


>gi|296129870|ref|YP_003637120.1| protein of unknown function UPF0118 [Cellulomonas flavigena DSM
           20109]
 gi|296021685|gb|ADG74921.1| protein of unknown function UPF0118 [Cellulomonas flavigena DSM
           20109]
          Length = 398

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/329 (16%), Positives = 108/329 (32%), Gaps = 13/329 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F  V  AL+      P+                  + ++ +  F+  L ++ Y    +  
Sbjct: 71  FVAVFLALVFTAVLRPLVEVMSRVMP--RGLATAFSLLAGILFFLGMLTYVGYSIATQWN 128

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           +L ++                        S  +T            +  +++ +  D   
Sbjct: 129 DLSTQFADGINQITDFLE---------SGSLPFTITSEQIAEWIDTALAWVQEHAGDLAG 179

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
           + A+  G + + +  ++   I    FF   G  +     +       A W+         
Sbjct: 180 QAAASAGSVVVGFT-AVALAIFCSVFFLARGAQLWTWFLNQLPARTRATWQVAGGAGWYT 238

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
                 G  IIA+ +G++      +  VP    L V+  I A IP  GAP +     I  
Sbjct: 239 FSGYTRGTVIIALVDGVLAFLLLSVLRVPLAAPLAVLVLIGAFIPLVGAPGAMIVAMIVA 298

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           L    +++A  + +  A+   +    L+P ++G  + L  +     +  G  T G+LG  
Sbjct: 299 LAANGLWSAVAVGVGIALIGQLEGHVLQPLIMGKQVSLHPVVVALAVTAGTLTAGILGAV 358

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISS 358
           I   L+A+   ++          +E    
Sbjct: 359 ISVPLVAVAWAVFSRLRTLDPPMEEDEDE 387


>gi|153933638|ref|YP_001384110.1| hypothetical protein CLB_1788 [Clostridium botulinum A str. ATCC
           19397]
 gi|153935595|ref|YP_001387650.1| hypothetical protein CLC_1795 [Clostridium botulinum A str. Hall]
 gi|152929682|gb|ABS35182.1| putative membrane protein [Clostridium botulinum A str. ATCC 19397]
 gi|152931509|gb|ABS37008.1| putative membrane protein [Clostridium botulinum A str. Hall]
          Length = 364

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/320 (16%), Positives = 114/320 (35%), Gaps = 9/320 (2%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P + A  I +   P+   F +K +    F  +I  + V+ L I+ +       +  + 
Sbjct: 43  LVPFIWAFGIAYILNPLMKYFQNKFKLKRIFSIIITYIIVIGLLILFINTFVPKIIKNIG 102

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           +L           I   +W +D        ++  ++     ++  L      +N  +   
Sbjct: 103 DLFVHSPDYINQTI---QWFNDNIKYSKVYDMLMENYQISNNIPNLLNKI--SNLTNTFL 157

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK----KISRI 206
                  + F  + +  +F +I   +   D  S+ + L      L             + 
Sbjct: 158 NTFLNTTIKFTSFLVRFVFGLIISIYLLLDKESLIENLKKFILALSGEKNYSKILSFFKE 217

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           V  V     +G +I ++  GL+  +   +  VP    +  I  I  MIP   P      +
Sbjct: 218 VDIVFSKYIIGKSIDSLIIGLMCFAGLTIMKVPYAALISFIVGITNMIPYFGPFIGMIPA 277

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
             + +  N   A  + ++  I        L P ++G  + L  +   F +  G  T G++
Sbjct: 278 FIITLFFNYIKAIWVLIFIIILQQFDGWYLGPKILGNQVGLSPIWIIFAITIGGGTFGVM 337

Query: 327 GLFIGPVLMALIAVIWKESI 346
           G+F+   ++A+I +   + I
Sbjct: 338 GMFLSVPIVAIIKIYLDKYI 357


>gi|148559405|ref|YP_001258693.1| putative permease [Brucella ovis ATCC 25840]
 gi|148370662|gb|ABQ60641.1| putative permease [Brucella ovis ATCC 25840]
          Length = 382

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/326 (14%), Positives = 112/326 (34%), Gaps = 20/326 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G M + ++F+++ S   L     P ++ + + +   P+      K   S    +++  + 
Sbjct: 20  GAMAFFVLFLVVFSSVLL-----PFVAGMALAYFLDPVADRLE-KVGLSRLAASIVILLI 73

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + + I+ L+ +      ++ + +S +         +             SE   K++  
Sbjct: 74  FLMILIIGLMIVVPILATQLADFISNLPGYITQLQSLLA--------NRDSEWLKKYIGI 125

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
             ++   + + L   G  F+          G   +D     +   +  F+   D   +  
Sbjct: 126 DSTVIQQNLSSLLQQGAGFLSTLLQSLWNSGKSLIDIAGLFVVTPVVAFYMLLDWDRMVN 185

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +DS          ++I+R +   +     G   + +  G        L G+   + +G 
Sbjct: 186 SIDSWVPRKQLHTVRRIAREMNAAVAGFIRGQGTLCLILGTYYAIGLTLTGLSFGLLIGF 245

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
              +++ IP        A++I +++     +      +     +  FI    L+P LVG 
Sbjct: 246 FAGLISFIPYIGSFVGLALAIGVVLVQFWPDWIMVCTVAAVFFLGQFIEGNILQPKLVGS 305

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLF 329
            + L  +   F L       G  G+ 
Sbjct: 306 SVGLHPVWLMFALFAFGSLFGFTGML 331


>gi|323340244|ref|ZP_08080508.1| permease [Lactobacillus ruminis ATCC 25644]
 gi|323092435|gb|EFZ35043.1| permease [Lactobacillus ruminis ATCC 25644]
          Length = 379

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 112/299 (37%), Gaps = 8/299 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEES----STFLAVIATVSVMCLFIVPLLFL 81
           F+   FAP+L A  + +   P+ +  +  K ++     T    I  + ++ + +  L FL
Sbjct: 40  FISTLFAPILIAGFLFYLLNPLVNLLMKIKVKNHHVSRTAAVAIVFLLLIAIIVSALSFL 99

Query: 82  FYYGMLEMKELVSKV---VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
               + ++++L+  +   + + QH +       ++P  +          ++ + ++    
Sbjct: 100 IPNILNQVEQLIKNMPEYIRSFQHFLTKIFQQKNLPPWIVDLTKDVDINAYTKEIEESLS 159

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
            F K N +  I         +     ++I+ +   LF+  +DG  +   +  +       
Sbjct: 160 GFAK-NFMMSITSSIGSIIGMVTSVTVTIVTVPFMLFYMLKDGHKLVPTVTGVFSEKQAN 218

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              ++   + + I     G  I  +  G      Y + GVP  + +G+   I  MIP   
Sbjct: 219 RIGELLEKMSETISKYISGQAIECLFVGTCTAIGYGIVGVPFALLIGIFAGITNMIPYIG 278

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
           P      ++ L +  ++     + +   +   I    + P ++G  + +  L     L+
Sbjct: 279 PYIGLLPALILAMSNSVKQTILVIIVCVVVQQIDGNLIYPNVIGKSLDIHPLTIIIILL 337


>gi|291437516|ref|ZP_06576906.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
 gi|291340411|gb|EFE67367.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
          Length = 455

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/319 (12%), Positives = 106/319 (33%), Gaps = 21/319 (6%)

Query: 17  MFIILVSLYFLKGFFAPV-------LSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           + ++  +++ L    + V        ++L+I     P  +    +          +  + 
Sbjct: 81  LLVLAGTVWVLMRVISAVQLVVLAFAASLLITALLQPTVARLC-RIGVPRGPATALTALF 139

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              +  +   F+ +  M  +  L  ++         +  WL + P  +   ++     + 
Sbjct: 140 GFVVIGLIGWFVTWQVMENIDHLSDQIQDGIDE---LRNWLLNSPFHVTDKQINEIAKNL 196

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            +++   +E                    + ++    I+  + +  F   DG  I +   
Sbjct: 197 REAVGANTEQITSAGIEGV---------TVVVEALTGILLAVFSTLFLLYDGRRIWEWSL 247

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L                 + + +   G  ++A+ + + +G   +   VP  V L V   
Sbjct: 248 KLVPAAARPGVAGAGPAAWRTLTAYVRGTVVVALIDAIFIGLGIYFLDVPMAVPLAVFIF 307

Query: 250 IMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           + + IP    +   A+++ + L+   +F      +       I    L+PF++G  +++ 
Sbjct: 308 LFSFIPLVGAVVSGALAVVVALVTQGVFTGVMTLVVVLAVQQIEGHILQPFILGRAVRVH 367

Query: 309 FLPTFFGLVGGVRTMGLLG 327
            L     +  G    G+ G
Sbjct: 368 PLAVVLAVTTGGMVAGIGG 386


>gi|327484686|gb|AEA79093.1| Putative permease PerM [Vibrio cholerae LMA3894-4]
          Length = 354

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 56/349 (16%), Positives = 121/349 (34%), Gaps = 14/349 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P       I+    +++YF     AP+L A+++ +   WP+    + +     T   +I
Sbjct: 15  DPHAASLVAILLFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQ--LRRLRIPRTLAVII 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
                  L I+ +  L      ++  L++ V           ++++ +P           
Sbjct: 73  VITVFTGLMILAVFGLVPTIWKQVGNLINDVPNMYNGTQ---KFITSLPE----RYPELA 125

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           HL   +S+   ++  +   G   +    +   +      + +I + + +FF  +D   + 
Sbjct: 126 HLEIVESVIGNAKNKVLGMGESVVKGSLASL-VSLATLGVYLILVPLLVFFLLKDKQEML 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +          K+   + + I +   G  +  +  G V    + +  +   V L 
Sbjct: 185 RMASGILPR-NRKLANKVWEEMNQQISNYIRGKVLEIVIVGTVSYITFAILDLRYSVLLA 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V   +  +IP  GA      V+I  L + G       L +   I   +    L P L   
Sbjct: 244 VAVGLSVLIPYIGAAAVTVPVAIVALFQWGLTPQFYTLLIAYGIIQALDGNVLVPVLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            + L  +     ++      G  G+F    L  L+  +WK      +E 
Sbjct: 304 AVNLHPVAIIIAVLVFGGLWGFWGVFFAIPLATLVKAVWKALPSIDEEP 352


>gi|304383623|ref|ZP_07366082.1| membrane protein [Prevotella marshii DSM 16973]
 gi|304335147|gb|EFM01418.1| membrane protein [Prevotella marshii DSM 16973]
          Length = 365

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 57/355 (16%), Positives = 136/355 (38%), Gaps = 27/355 (7%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFA----PVLSALIIGFTSWPIYSSFISKKEES-STFLAV 64
             +RW ++ +++V++ ++  + +    P   A ++ +  +PI      K          V
Sbjct: 10  RFIRWALIALLVVTVLYIVSYLSNVLLPFFVAWLLAYLLYPIVRFVQYKLHVRVRALAIV 69

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEM---KELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           ++ V+V+ L    L F+    + ++    ++  + +    H   V  W+           
Sbjct: 70  LSMVAVLGLIGGVLYFIIPPMIEQLDRLTDVAGRYLKDTTHSNSVTAWIQQ--------- 120

Query: 122 LWTKHLSHPQSLKILSETF--LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            W +   H  +    S+ F  +    +  +     +   I +    S I ++  +FF   
Sbjct: 121 -WLQDNRHEITRFFHSKDFSDIVKTTMPRLFAVLGQTASIVMSIVASFITLLY-MFFILL 178

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D  +++     +       +WK++   V + + +   G +++++  G++    + L   P
Sbjct: 179 DYETLTNNWIKIFPQKNRPFWKELMHDVERELNNYIRGQSLVSLIMGILFCIGFTLIDFP 238

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLI----KGNIFNATCL--FLWGAIELFIVD 293
             + LG++  ++ ++P    ++    +I  L+     G  F    +   L   I   I D
Sbjct: 239 MGIGLGILIGLLNLVPYLHTLALVPTAILALLKAAETGENFWWVFVPALLVFLIVQLISD 298

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             + P ++G  ++L        L      +G +GL I   L  LI   W+  +  
Sbjct: 299 LVVTPRIMGKAMRLNPAILLLSLSVWGALLGFVGLIIALPLTTLIIAYWQRYVTK 353


>gi|283796073|ref|ZP_06345226.1| sporulation integral membrane protein YtvI [Clostridium sp. M62/1]
 gi|291076286|gb|EFE13650.1| sporulation integral membrane protein YtvI [Clostridium sp. M62/1]
          Length = 376

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 63/366 (17%), Positives = 128/366 (34%), Gaps = 13/366 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFL----KGFFAPVLSALIIGFTSWPIYSSFISKKEES 58
           E       I+ ++   IIL++ + L        AP  +  +I +           +    
Sbjct: 2   EIQKRKNFIINFLYFTIILLAAFILIKYGLPMVAPFAAGFVIAYLLRTPVCFLSKRLRMK 61

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
               AV+  +   C   + +  +       +K  +  +     +   V   LSDI  G+ 
Sbjct: 62  KKAAAVLTVLVFYCTVGLLIFLMSVKAFSAVKGFLFNLPAL--YAAHVEPILSDIYSGIE 119

Query: 119 ASEL-----WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
            S L         L    +    S   + ++       + S          +S++ +II+
Sbjct: 120 QSFLHMDPALLTALEELMTQFSQSLGQMVSSLSRLAMGYVSGVASSLPGIFISLLLLIIS 179

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
            FF   D   ++       +      +  I   V   +        +I     L L    
Sbjct: 180 TFFISADYDRLTGFCLLQLDEKRREIFLLIKEYVVGTLFVCIRSYALIMSITFLELSIGL 239

Query: 234 WLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            + GV + + +  + AI  ++P  G         +   +K N   A  L L   + + +V
Sbjct: 240 TVVGVENSIFIAFLIAIFDILPVLGTGGVMIPWIVLEALKMNFSMALALLLVY-LFVTVV 298

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              + P +VG  I L  + T   +  G +  G+LGLF  P+ ++L+  + +  ++ +   
Sbjct: 299 RNIIEPKIVGAQIGLHPVVTLSSMFVGAQLFGVLGLFGFPICLSLLRYLNENGVIRLFRM 358

Query: 353 KEKISS 358
           +E  +S
Sbjct: 359 EENTNS 364


>gi|254485468|ref|ZP_05098673.1| membrane protein [Roseobacter sp. GAI101]
 gi|214042337|gb|EEB82975.1| membrane protein [Roseobacter sp. GAI101]
          Length = 358

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/339 (15%), Positives = 114/339 (33%), Gaps = 14/339 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             + LV L+F      P L    I +   P+     S    S     ++ T+  + +F++
Sbjct: 16  AAVFLVILWFTGNVLLPFLIGAAIAYFLDPVADRLES-LGLSRAMATMVITLIAILIFVL 74

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             L +    + +   L +       + +   R     P            L++  +    
Sbjct: 75  MALLVIPALVTQSVSLFNVAPKLADNFMAFLR--DHFPTLFVEGSTLNTSLTNIAATVQE 132

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               L         + A       L+  L  + + +   +   D   +  ++DSL     
Sbjct: 133 RGGEL--------LQTALASAASLLNIMLLFVIVPVVAVYLLLDWDRMVAEIDSLLPREH 184

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               ++++R + + +     GM  + +  G     A  L G+   + +G I  ++  IP 
Sbjct: 185 APVIRRLAREIDRTLAGFVRGMGTVCLILGTYYAIALMLVGLQFGLVVGFIAGLVTFIPY 244

Query: 257 GAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
              +    ++I L +    G+  +   +     +   +    L P LVG  + L  +   
Sbjct: 245 LGALLGGILAIGLALFQFWGDWLSIGLVAGVFFLGQTLEGNFLTPKLVGNSVGLHPVWLI 304

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             L       G +G+     + A + VI + +    +E+
Sbjct: 305 LALSVFGSLFGFVGMLAAVPIAATLGVIARFAAEQYRES 343


>gi|295090070|emb|CBK76177.1| sporulation integral membrane protein YtvI [Clostridium cf.
           saccharolyticum K10]
          Length = 379

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 56/334 (16%), Positives = 117/334 (35%), Gaps = 8/334 (2%)

Query: 16  IMFIILVSLY--FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           +  I LV  +   L GFF P +   +I   + P+      +        + +  V V+ L
Sbjct: 18  LTGIYLVCFWGPKLLGFFIPFVIGWVIALIANPLVRFLERRMRIVRKHGSALIIVGVLAL 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            I+ L  +      E+++ +  +    ++     R   +  GG     L  +        
Sbjct: 78  IILLLYLVIGKLYTEIRDFIGDLPALYENAALEIRGALE-NGGRLFEFLPDEFQETVVRF 136

Query: 134 KILSETFLKTNGIDFIP---RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                +++              A        +  ++ +  I++ + F  +   I + L  
Sbjct: 137 TENLGSYMGEIVSKAAAPTVEIAGNVAKGIPNALVNTVITILSAYIFIAEQERIMEWLRK 196

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +       Y   + +    VI   FL    I     ++L   +    V   + L V+ +I
Sbjct: 197 ILPEFILRYIAYLKKDARGVIGGYFLAQFRIMFVVAVILAVGFLFLDVSYGLVLAVLISI 256

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  G   +    +   L  G+   A  L +   +   +  + ++P +VG  + LP 
Sbjct: 257 LDFLPVFGTGTALFPWAAVKLFTGDYGYAAGLLILY-VVTQVARQLIQPKIVGDSMGLPP 315

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L T F L  G +  GL G+ +   +  +    +K
Sbjct: 316 LMTLFLLYLGFKMKGLAGMILAVPIGLIFINFYK 349


>gi|312622433|ref|YP_004024046.1| hypothetical protein Calkro_1371 [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202900|gb|ADQ46227.1| protein of unknown function UPF0118 [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 351

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 126/359 (35%), Gaps = 16/359 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLK------GFFAPVLSALIIGFTSWPIYSSFISK 54
           M    L  +     + + +I + +YF            P L AL + +   P      +K
Sbjct: 1   MHIIKLVKRYFTDILFIALIAIVIYFFANMKAFWPILIPFLIALFLSYLLKPCVDFLETK 60

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
                    +I+   +  + I+  ++     + E K+L+  +       I + +W  +I 
Sbjct: 61  IRSRD-ISILISFAIIFGITIMVFVYFIPLFVSETKQLIQNIPDYI---ILIQKWFFEI- 115

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                ++L         +  I  E   K     F+               L  + + I  
Sbjct: 116 DSKLLNKLNIDIKEILNANSINIEGISKQTLSIFL-----NIVKSISSNILYYLLIPIIS 170

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           F+  RD   +   +  L    +      I   + +V+     G  + A   GL+    + 
Sbjct: 171 FYILRDWKRLVMWIKWLLPEKYRKEGLYIFVDINRVLHQYIRGQLLDAFIVGLLSFVGFS 230

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           L  V     LGVIT I  +IP   PI  +  ++ + +  +   A  + ++  +   +   
Sbjct: 231 LLSVRYAALLGVITGIGNLIPYFGPIFSSIPAVIIALSDSYIKAILVVIFLVLLQQVDSF 290

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            + P ++G  + L  L     ++   +  G + +F    + A+I +I+   +  IK  K
Sbjct: 291 IISPRVIGSKVGLHPLTIIIVIILANKIFGFVAMFFAIPIAAVIKIIFINIMKRIKSEK 349


>gi|254473425|ref|ZP_05086822.1| permease [Pseudovibrio sp. JE062]
 gi|211957541|gb|EEA92744.1| permease [Pseudovibrio sp. JE062]
          Length = 363

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/339 (14%), Positives = 119/339 (35%), Gaps = 9/339 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N Q     + +   ++ L   +G   P ++ + + +   PI     +         A +
Sbjct: 3   VNKQLFFWLLSLAAFILFLTVFQGILLPFVAGMALAYLLDPIADYLETHGFGR--IWATV 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +  +  V    L     +  K+L++ +    +    +   L +  G     +    
Sbjct: 61  TILLIFLIVFV--AALLILLPILGKQLIAFLDYLPELAANLETLLRE--GLGPQLDRLAN 116

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                Q +   +      N +  +       G   +      +   +  F+   D  ++ 
Sbjct: 117 LSGQGQKIDWGAFVGQAANFVGGLLSSIWSGGQALISIIGLAVVTPVVAFYLLLDWDNMI 176

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +++DS     +    + ++R +  V+     G  ++ +  G        + G+   + +G
Sbjct: 177 ERIDSWLPRDYQQTIRTLARDMDSVVAGFVRGQVLMCLILGTFYAVGLLIVGLKFGLLIG 236

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           +   +++ IP    I    +SI + +     + F    +     +  F+    L+P L+G
Sbjct: 237 LTAGLISFIPYVGAIVGFGLSIGVALVQFWPDPFMIGAVLAVFVVGQFLEGNVLQPKLLG 296

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           G + L  +   F L      MG +G+ I     A++ V+
Sbjct: 297 GSVGLHPVWLMFALFAFGSLMGFVGMLIAIPAAAVVGVL 335


>gi|220906628|ref|YP_002481939.1| hypothetical protein Cyan7425_1198 [Cyanothece sp. PCC 7425]
 gi|219863239|gb|ACL43578.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7425]
          Length = 390

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/315 (15%), Positives = 123/315 (39%), Gaps = 11/315 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSS---FISKKEESSTFLAVIATVSVMC 72
           I+ +   ++  +  +F  + + LI+      + +    +I ++    +  ++I  +  + 
Sbjct: 28  ILVLNFWAMTSISRYFGALFAVLIVASLLAFLLNYPVSWIERQGGKRSQASIIVFLLAIS 87

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           + +   + L      + ++L +++    + G      LS          L     +    
Sbjct: 88  ILLGLGVTLVPMAFAQAQQLTARLPEWVESGRQQLLVLSH---KADEMGLPIDLDALGLQ 144

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           L    +  L+      +   A       LD  ++++  I+  F+  + G  +   L    
Sbjct: 145 LLDRLKEQLQAVARGVL-NLAVDTVSSLLDVLINVVLTIVLTFYLLQHGDELWSSLIQW- 202

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L P   +  S+ +    ++ F+G  I++      L S + L  VP  +  G+   +MA
Sbjct: 203 --LPPKVQEPFSQTLRLSFQNYFIGQLILSTCMAAGLISTFLLLKVPFGLLFGLTIGLMA 260

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++P G  +    +++ + ++ +++    +     I   I++  + P ++G    L  +  
Sbjct: 261 LVPFGGTVGIITITLLVTLQ-DVWLGLRVLGASVIVQQILENLIAPRIIGSVTGLNPVWV 319

Query: 313 FFGLVGGVRTMGLLG 327
           F  ++ G +  GLLG
Sbjct: 320 FLSILAGAKIGGLLG 334


>gi|16761411|ref|NP_457028.1| hypothetical protein STY2734 [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16765813|ref|NP_461428.1| permease [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|29140892|ref|NP_804234.1| hypothetical protein t0364 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|62181060|ref|YP_217477.1| PerM family permease [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|167549489|ref|ZP_02343248.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|197249699|ref|YP_002147446.1| permease PerM [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|205353598|ref|YP_002227399.1| hypothetical protein SG2525 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207857906|ref|YP_002244557.1| hypothetical protein SEN2474 [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213160892|ref|ZP_03346602.1| hypothetical protein Salmoneentericaenterica_12908 [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|224582973|ref|YP_002636771.1| hypothetical protein SPC_1164 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238913632|ref|ZP_04657469.1| hypothetical protein SentesTe_21218 [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289829337|ref|ZP_06546949.1| permease PerM [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|25307066|pir||AC0818 probable membrane protein STY2734 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16421035|gb|AAL21387.1| putative PerM family permease [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16503711|emb|CAD02695.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136517|gb|AAO68083.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|62128693|gb|AAX66396.1| putative PerM family permease [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|197213402|gb|ACH50799.1| permease PerM [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|205273379|emb|CAR38351.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205325154|gb|EDZ12993.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|206709709|emb|CAR34059.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224467500|gb|ACN45330.1| hypothetical protein SPC_1164 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|267994604|gb|ACY89489.1| putative permease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301159045|emb|CBW18558.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913481|dbj|BAJ37455.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|320086987|emb|CBY96757.1| putative permease perM [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321222805|gb|EFX47876.1| Putative permease PerM [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322613768|gb|EFY10707.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322619489|gb|EFY16365.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322624994|gb|EFY21823.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322629563|gb|EFY26339.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322634007|gb|EFY30744.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635555|gb|EFY32266.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322639897|gb|EFY36573.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322644391|gb|EFY40932.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322649155|gb|EFY45595.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322655245|gb|EFY51554.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322658292|gb|EFY54558.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322664292|gb|EFY60489.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322669460|gb|EFY65609.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322673187|gb|EFY69293.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322676578|gb|EFY72646.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322683329|gb|EFY79343.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322685785|gb|EFY81778.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|322715543|gb|EFZ07114.1| Putative permease perM [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323130823|gb|ADX18253.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323192538|gb|EFZ77767.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323199583|gb|EFZ84674.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323208089|gb|EFZ93034.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323210188|gb|EFZ95089.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323217054|gb|EGA01776.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323220607|gb|EGA05056.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323225473|gb|EGA09704.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323229257|gb|EGA13381.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235428|gb|EGA19512.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323237386|gb|EGA21449.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323245141|gb|EGA29142.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323253131|gb|EGA36963.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323258707|gb|EGA42368.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323260612|gb|EGA44222.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323266388|gb|EGA49876.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323269781|gb|EGA53231.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|326624317|gb|EGE30662.1| permease PerM [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
 gi|326628695|gb|EGE35038.1| Putative membrane protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 355

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/347 (14%), Positives = 115/347 (33%), Gaps = 14/347 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +P+ I   +I+      L+F  G  AP+L A+++ +   WP  +   +       
Sbjct: 10  RRRFSDPEAIALLVILVAGFSILFFFSGLLAPLLVAIVLAYLLEWP-TARLQAIGCSRRW 68

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             +++  + V  L ++  + +       +  +     + N+            P  M A 
Sbjct: 69  AASIVLILFVGILLLMAFVVMPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +     +    +  + ++ +K +    +           L   + ++ + + +FF  +D
Sbjct: 129 IIDAMAENMRTRMLNMGDSVVKYSLASLV---------GLLTLAVYLVLVPLMVFFLVKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +          ++   + + I +   G  +  +  G+     + L G+  
Sbjct: 180 KEQMLNAVRRVLPRNRGLAG-QVWNEMNQQITNYIRGKVLEMVVVGVATWLGFLLFGLNY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V+     +IP  GA +    V  + L   G        F    I   +    L P
Sbjct: 239 SLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGLGTEFWSCFAVYLIIQALDGNLLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L    + L  L     +V      G  G+F    L  LI  +    
Sbjct: 299 VLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVHAW 345


>gi|239929181|ref|ZP_04686134.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
          Length = 452

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/319 (12%), Positives = 106/319 (33%), Gaps = 21/319 (6%)

Query: 17  MFIILVSLYFLKGFFAPV-------LSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           + ++  +++ L    + V        ++L+I     P  +    +          +  + 
Sbjct: 78  LLVLAGTVWVLMRVISAVQLVVLAFAASLLITALLQPTVARLC-RIGVPRGPATALTALF 136

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              +  +   F+ +  M  +  L  ++         +  WL + P  +   ++     + 
Sbjct: 137 GFVVIGLIGWFVTWQVMENIDHLSDQIQDGIDE---LRNWLLNSPFHVTDKQINEIAKNL 193

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            +++   +E                    + ++    I+  + +  F   DG  I +   
Sbjct: 194 REAVGANTEQITSAGIEGV---------TVVVEALTGILLAVFSTLFLLYDGRRIWEWSL 244

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L                 + + +   G  ++A+ + + +G   +   VP  V L V   
Sbjct: 245 KLVPAAARPGVAGAGPAAWRTLTAYVRGTVVVALIDAIFIGLGIYFLDVPMAVPLAVFIF 304

Query: 250 IMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           + + IP    +   A+++ + L+   +F      +       I    L+PF++G  +++ 
Sbjct: 305 LFSFIPLVGAVVSGALAVVVALVTQGVFTGVMTLVVVLAVQQIEGHILQPFILGRAVRVH 364

Query: 309 FLPTFFGLVGGVRTMGLLG 327
            L     +  G    G+ G
Sbjct: 365 PLAVVLAVTTGGMVAGIGG 383


>gi|326443144|ref|ZP_08217878.1| putative integral membrane protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 444

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/308 (14%), Positives = 104/308 (33%), Gaps = 21/308 (6%)

Query: 17  MFIILVSLYFLKGFFAPV-------LSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           + ++  +L+ L    + V        SAL+I     P  +  + +          +  ++
Sbjct: 79  LLVLAGTLWVLMRVISAVQLVVLAFASALLITALLQPTVARLL-RIGLPRGLATAVTAIA 137

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              +  +   F+ +  M  +  L  +V    Q    +  W  + P  +   ++     + 
Sbjct: 138 GFAVMALVGWFVVWQVMENLDTLSDRVREGIQE---LRLWALEGPFHVSEGQINDLADNL 194

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             ++   +E          I     +     +++    +  + +  F   DG  I Q   
Sbjct: 195 SDTIGSNTEE---------ITSAGLQGVTALMEFLAGALLAMFSTLFLLHDGPRIWQWTL 245

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L                   + +   G  ++A+ + + +G   W   VP  V L V   
Sbjct: 246 KLVPAQARPGVASAGPRAWATLTAYVRGTVLVALIDAIFIGLGIWFLDVPMAVPLAVFVF 305

Query: 250 IMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           + A +P  GA +S     +  L+   +F A  + +       I    L+PF++G  +++ 
Sbjct: 306 LFAFVPLVGAVLSGALAVVVALVTQGVFTALMVLIVVLAVQQIEGHVLQPFILGRAVRVH 365

Query: 309 FLPTFFGL 316
            L     +
Sbjct: 366 PLAVVLSV 373


>gi|224541834|ref|ZP_03682373.1| hypothetical protein CATMIT_01006 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525257|gb|EEF94362.1| hypothetical protein CATMIT_01006 [Catenibacterium mitsuokai DSM
           15897]
          Length = 391

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 57/349 (16%), Positives = 122/349 (34%), Gaps = 24/349 (6%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSS----------FISKKEESSTFLAVIATVSVMCLFI 75
           FL   F P+L   +I +   P+             F  KK+ S      I ++ V+ +F 
Sbjct: 47  FLTQVFTPLLIGFVIAYLLKPLVEKVESSLRSISYFQEKKKLSHQLSVAITSLIVLFVFA 106

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +   F+      E+       V   +      R ++         E     L       +
Sbjct: 107 LLSAFVIRSIGKEL------AVTQFKDMSDFLRIIAK--NVNAFYEDLIVQLKSMSISTV 158

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ----LDSL 191
             + FLKT               +  D+  +++F II   +F  DG  +       + + 
Sbjct: 159 QLQQFLKTFANGLTTNILGAISRVS-DFFTNLLFSIIFAIYFMLDGEKLWNYWSKSIKAF 217

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                     ++   +  V      G  I A    L++  A+    +   + + ++  I 
Sbjct: 218 TSRQVDVVIHQLLVDIEGVFSGYVRGQVIDAFLMFLMVSIAFGFLHIKFWIVIALLVGIG 277

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            ++P  G  + + +++I  L+ G++  A   F+   I   +    + P L+   I +  +
Sbjct: 278 NLVPYVGPFLGYGSIAIIGLVTGDLHMALKAFIALLIIQGVDGNIINPRLLSASIDIHPV 337

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                L+ G    G LG+ +   + AL  + ++  +    ++K ++   
Sbjct: 338 LVIVSLIIGSMIGGFLGMLVSVPVGALCKIWFERLVDYRTQSKNELVEE 386


>gi|37526639|ref|NP_929983.1| putative permease PerM [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36786071|emb|CAE15123.1| Putative permease perM [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 359

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 60/353 (16%), Positives = 124/353 (35%), Gaps = 18/353 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +PQ I  ++I+      +YFL G   P+L A+++ +   WP     + K   S T
Sbjct: 10  RRRFTDPQVIALFVILLAGFCIIYFLHGILTPLLVAIVLAYLLEWPTAK--LEKLGCSRT 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               I  +    + ++ +L +      +   L+S +          P  L+         
Sbjct: 68  VAVCIVLIIFSSISLLVILIVAPTVWQQGINLLSDI----------PNMLNRFNEYAQTL 117

Query: 121 ELWTKHLSHPQSLKILSETFLK--TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                 L     + +++E      +   + + +F+    +  L   + +I + +  FF  
Sbjct: 118 PARYPALVDAGIIDMMAENLRSKISIAGESVVKFSVASLIGLLTLAIYLILVPLMAFFLL 177

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D   + Q L  +          ++ R + + I +   G     +  G+   + +   G+
Sbjct: 178 KDKNQMLQALQRVLPR-NRILAGQVWREMNQQITNYIRGKVTEMVIVGICTYAVFAFLGL 236

Query: 239 PSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTL 296
              + L V+  +  +IP  GA I    V +  L +  +      L +   +   +    L
Sbjct: 237 DYSLLLSVLVGLSVLIPYVGALIVTIPVVLVALFQWGVGTDFWTLIIAYLVVQGLDGNLL 296

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            P L    + L  L     ++      G  G+F    L  LI  + +     I
Sbjct: 297 VPILFSEAVNLHPLVIILSVITFGGLWGFWGVFFAIPLATLIKAVIQAWPEEI 349


>gi|313675596|ref|YP_004053592.1| hypothetical protein Ftrac_1494 [Marivirga tractuosa DSM 4126]
 gi|312942294|gb|ADR21484.1| protein of unknown function UPF0118 [Marivirga tractuosa DSM 4126]
          Length = 368

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/340 (14%), Positives = 118/340 (34%), Gaps = 15/340 (4%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
                    + +++  L   K    P+  AL++ F  +P++  F      +    A  + 
Sbjct: 6   QNSFFTLAFVAVLIAFLVIAKSILIPLGIALLLAFILYPVHKKFSQWGVGN-ILAAFFSI 64

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + ++ +    + F     +    E+ +     ++    V  +++          +     
Sbjct: 65  LLLIIIIGGGITFFSAEIIALSDEISNFGEKLSKLYTDVIIFVNQ--------NVSLVED 116

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            +   L    +++LK +    +            ++   +I M I +F F      + + 
Sbjct: 117 LNKDQLLNDLKSWLKDSAGSLLGGT----FNSTANFFTGLITMFIYMFLFLIYHKGLVRA 172

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                       + K+ + V +V +    GM ++ +  G       W+ G+ S    G +
Sbjct: 173 FMKFSPEDKKQEFFKMLKGVQQVGQKYLSGMLVLIVILGFANSIGLWIIGIDSPFLFGFL 232

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGN-IFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            A +++IP  G  +  T   +Y  +  + +     + +       I    L P +VG  +
Sbjct: 233 AASLSIIPYIGTTLGATIPVLYAFMSHDSLLVPLAVAILFWAVQLIESNFLSPKVVGNSV 292

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            +        L+ G    G+ G+ +     A++ V+ +E 
Sbjct: 293 NVNAFAAILSLIVGASIWGVAGMVLFLPFAAMLKVVCEEY 332


>gi|58697572|ref|ZP_00372799.1| hypothetical protein WwSim0537 [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58535933|gb|EAL59683.1| hypothetical protein WwSim0537 [Wolbachia endosymbiont of
           Drosophila simulans]
          Length = 333

 Score = 82.2 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 55/334 (16%), Positives = 122/334 (36%), Gaps = 13/334 (3%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS-----TFLAVI 65
           I    I+  I+  L+ ++    P L +++I +   P+   F   +   S       L ++
Sbjct: 6   ITICFILLFIIGMLFLMRPMIFPCLISVVIAYLFNPLVVKFEKYRIPRSCSVIFIILILL 65

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
               ++  F++P++++    +L    LVSKV       IP      +I       +  +K
Sbjct: 66  IAFILVITFVLPIIYVQITSILNF--LVSKVPSLKLKVIPSVLEFLNIKIEDSLFDHLSK 123

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +L+   S  +        N +D    F  +      +    ++   +  F+  RD   I 
Sbjct: 124 NLAENYSNYVS----YFMNALDIASNFIIQVLSSSFNTVSLMVITPVVFFYILRDWPLII 179

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           ++   L    +          V  +I +   G   + I   +    +  + G+   + +G
Sbjct: 180 EKASKLIPIPYRGKIADYFSKVDFIISNYLKGQVNVCIVMMVFYSVSLSIIGLEHSIVIG 239

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           +++ ++  IP   P+ +T +     I      F +  + L   +   I    L P L+G 
Sbjct: 240 ILSGMLTFIPYVGPLLYTIIGFLSAITQFSGWFESAAVLLLFGVGQLIDSNILVPLLIGK 299

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
            + +       G+       G  G+ +   ++A+
Sbjct: 300 KVHIHPTVIILGITICASYFGFTGILLFIPIIAM 333


>gi|302389809|ref|YP_003825630.1| sporulation integral membrane protein YtvI [Thermosediminibacter
           oceani DSM 16646]
 gi|302200437|gb|ADL08007.1| sporulation integral membrane protein YtvI [Thermosediminibacter
           oceani DSM 16646]
          Length = 352

 Score = 81.8 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/328 (14%), Positives = 127/328 (38%), Gaps = 4/328 (1%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + + ++ + +  +  +  P    ++I     PI +    K + S   + ++   ++    
Sbjct: 15  LAIAVVSIVIAIVLKYLLPFAVGMLIALMIDPIVNRIELKLKISRGIVVILVLSAIFSAL 74

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
              ++        E+ +L++ +         +   +      ++   +    L +     
Sbjct: 75  GYLIILAISRLTFELGKLINILPSYTDFLSAILSDIGSFMFSIY-DIIPKTVLDYLLKNW 133

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
               ++L     +F      + G +  +  + +IF  ++ +FF +D   I   +  +  H
Sbjct: 134 GQIISYLTGFLSNFYTFLVEKLG-LIPNILVFLIFTFLSSYFFAKDKKRIMISIRKILPH 192

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F    + I   +             + +   L+  + +++  V   + LG+I  ++ ++
Sbjct: 193 NFYKKLENIQLELLISFVGLIKAQITLVMISTLITIAGFYILKVDYALTLGIICGVLDVL 252

Query: 255 P-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P  G  I F   +++  I GNI  A  L     + +    + L+  ++G  + L  +   
Sbjct: 253 PIFGPSIIFIPWAVFSAIVGNIKFAIALIALYLVVVG-CRQVLQAKVIGTHLGLDPIVAL 311

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             +  G++  G LGLFIGP+++ ++  +
Sbjct: 312 ISIYVGIKIFGFLGLFIGPLVVVIVRAV 339


>gi|75908944|ref|YP_323240.1| hypothetical protein Ava_2732 [Anabaena variabilis ATCC 29413]
 gi|75702669|gb|ABA22345.1| Protein of unknown function UPF0118 [Anabaena variabilis ATCC
           29413]
          Length = 345

 Score = 81.8 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 55/349 (15%), Positives = 127/349 (36%), Gaps = 21/349 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVL----SALIIGFTSWPIYSSFISKKEESSTF 61
           LN   ++R++++     ++  L  +F  V+     A I+ F                   
Sbjct: 13  LNNLALVRFLLLVAAGWAIVQLLAYFETVIVIFTFAAILAFLLSYPVQWLRRFLPH--NI 70

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             V+  +  + +    L+ +    + + ++L+  +       +P    +  +        
Sbjct: 71  AVVVIFLISIVILGGLLITVGIAILSQGQQLIDSISAFLTSLLPFLERVEGL-------- 122

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                  + Q    + +  L+T  +  +    +     FL   ++ I + +  FF   DG
Sbjct: 123 ---LRNRNLQIDLSVIQEQLRTQAVSTLVTSLA-IVQQFLTNFVTFILIAVVAFFMLLDG 178

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +      +          + + I+ +     F G  ++ +         + L  VP  
Sbjct: 179 EKLWNFTLKIIPQ---KRRIRFTNIMRRSFLGFFRGQLLLCLFLTSSTFIIFLLLQVPFA 235

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           + L VI  I+ +IPG            +++  +++ A  + +   +   I D  + P ++
Sbjct: 236 LILSVIVGILDIIPGIGATLGVGTITLIVLSQDVWLALKVLVACVVLQQIQDNLISPRIM 295

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            G + L  +  FF L+ G R  GLLG+FI   +  +I  +++   M  +
Sbjct: 296 QGALNLNPVVVFFALLVGARVAGLLGVFISIPITGVIVSLFEIDEMKSE 344


>gi|23010964|ref|ZP_00051477.1| COG0628: Predicted permease [Magnetospirillum magnetotacticum MS-1]
          Length = 377

 Score = 81.8 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/324 (14%), Positives = 112/324 (34%), Gaps = 14/324 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
            ET +  + I+   I+ +++  LY L+    P ++ L + +   P+              
Sbjct: 10  DETSMRGRAIIGLSILAVLIFLLYELREVMLPFVAGLALAYLLDPLADRLERLGLGR--- 66

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             + AT+ ++  F+V  + L    +      ++ +V A    +   + +     G     
Sbjct: 67  --LAATLLILAGFVVGFVVLLIIVVPLAASQIASLVNALPAMVARLQSILVERAGPLLQR 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFG--MIFLDYCLSIIFMIIALFFFYR 179
           +    + +   L+    T +   G  F+    S +      +     ++   +  F+   
Sbjct: 125 VGGAEVVN--ELQSSVGTLVGQGGTWFLAFLKSLWTGSQALVSIASLLVVTPVVAFYVLH 182

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D   +   LD           ++++  +   +     G +++ +  G       +L G+ 
Sbjct: 183 DWDRMIATLDGWVPPRHRPTVRRLAGEIDGAVTGFVRGQSLVCLILGSFYAVGLFLVGLN 242

Query: 240 SHVALGVITAIMAMIPG-----GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
             V +G+I+  +  IP      G  +S     +     G+  +         +  F+   
Sbjct: 243 FGVLIGLISGFLTFIPYVGTLTGFMLSIGVALVQWWPSGDWLHIGLTLGVFLVGQFLEGN 302

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVG 318
            + P LVG  + L  +   F L+ 
Sbjct: 303 VVSPKLVGDSVGLHPVWLMFALLA 326


>gi|283458312|ref|YP_003362931.1| putative permease [Rothia mucilaginosa DY-18]
 gi|283134346|dbj|BAI65111.1| predicted permease [Rothia mucilaginosa DY-18]
          Length = 428

 Score = 81.8 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/339 (12%), Positives = 104/339 (30%), Gaps = 11/339 (3%)

Query: 17  MFIILVSLYFLKGFFAPVLS---ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           + + L + Y      A V     A+ I     PI     S          +         
Sbjct: 97  VGLALFAYYIFNNVGALVGWVTGAIFIALGLDPIVRRLESW-GIKRGIGVIAVLAGFAGA 155

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               ++ +      +  + V       Q+ I    W  ++      S    ++      +
Sbjct: 156 VTGLVMTIGPIISEQASKFVQYAPGIYQNTIDS-DWYHELDQRFNISTWVNEN------V 208

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
               E+   ++ ++         G         +I ++    +F     +I      L  
Sbjct: 209 PKFLESTFSSSQVNSFMSSLVSAGSTLAQSVTGVIIVLFLSLYFLTSMDTIKAWGVRLAP 268

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  K I+  + + + +  +G  ++A+    V        G      + ++  I+A 
Sbjct: 269 ASKRVRVKYITDKITESVGNYVMGQALVAVLNAFVAFLIMAFLGFSFPQLMALVVMILAF 328

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP    +    ++  +L+      A    +   + L +    + P ++   + +P     
Sbjct: 329 IPLVGGVIALILTSLILLTQGWSLALWFAVAYFLYLQVEAYLISPRIMARAVSVPAGVAI 388

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             +  G    G+LG  I   + A + ++ +E  +  ++ 
Sbjct: 389 ISVAAGGALWGVLGALIAIPVAASMLILVREVFIPRQDQ 427


>gi|111025354|ref|YP_707774.1| hypothetical protein RHA1_ro08572 [Rhodococcus jostii RHA1]
 gi|110824333|gb|ABG99616.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 395

 Score = 81.8 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 94/279 (33%), Gaps = 8/279 (2%)

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++V  +F V L F   +  + +  LV++     Q     P +L+ +              
Sbjct: 118 LAVTVVFTVALAFTAGFFAVAIPPLVTQ---TEQLIDRAPDYLNQLQDHSSMVGKLNDRY 174

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                L               I       G    D     + + +   +F  +  +I   
Sbjct: 175 HLQDRLTSAV-----NGSGQTIVNETVSAGAAIFDALGKFLILAVLTVYFLANLPAIRTT 229

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L  H        I   +   + +  LG  +I++  G           VP  + LGV 
Sbjct: 230 GYRLIPHSRRPRAILIGDQIFAKVGAYVLGNVLISVIAGTATAIWLLAFNVPYALFLGVF 289

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            A+  ++P         V   + +  ++       ++        D  L P ++G  +K+
Sbjct: 290 VALFDLVPVVGSTIAGIVVAAVALTVSLPVCIATVIFFVAFRLAEDYLLVPRIIGRTVKI 349

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           P L T   ++ G   +G++G  +   + A I ++ +E++
Sbjct: 350 PALTTVVAVLIGGTLLGIVGALVAIPIAAAIHLLVEETV 388


>gi|288926027|ref|ZP_06419956.1| membrane protein [Prevotella buccae D17]
 gi|288337247|gb|EFC75604.1| membrane protein [Prevotella buccae D17]
          Length = 387

 Score = 81.8 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 64/370 (17%), Positives = 136/370 (36%), Gaps = 17/370 (4%)

Query: 1   MRETMLNPQGIMRWM-IMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M E  +    ++RW+ I  +IL  LY    L G   P   A +  +  +PI      +  
Sbjct: 1   MNEQKITFDKLVRWVGIGALILAVLYLVNYLSGALLPFFIAWLFAYLLYPIVKFIQYRLH 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
                LA+I T+ ++   I  +++L    M+E  E + +V     H              
Sbjct: 61  VKVRALAIIVTMILVIAVIAGVIYLIIPPMIEQFEKLGEVTTKWLHTTTHTNN-----LT 115

Query: 117 MWASELWTKHLSHPQSLKILSE-TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
            +  E    + S  +      + +      +  +  F  +   + +    S+I ++  +F
Sbjct: 116 TYIQEWLQANQSEIEKFFKSRDFSDAIKTAMPRLFSFVGQTASVVMSIIASMITLLY-MF 174

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F   D   ++Q    +       +W ++ + V + + +   G  ++A+  G++    + +
Sbjct: 175 FILLDYEHLTQNWIRIFPQKNRPFWHELMQDVERELNNYIRGQGLVALCMGIMFCIGFTI 234

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--- 292
            G P  + LG++  I+ ++P     +    +   ++K         +++G   +  +   
Sbjct: 235 IGFPMAIGLGILIGILDLVPYLHTFALIPTAFLAMLKAADTGQNFWWVFGLAVIVFIVVQ 294

Query: 293 ---DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
              D    P ++G  + L        L      +G +GL I   L  LI   W+  +   
Sbjct: 295 IITDFITTPKIMGKAMGLNPAILLLSLSVWGTLLGFIGLIIALPLTTLIIAYWQRYVTKE 354

Query: 350 KENKEKISSN 359
              K    SN
Sbjct: 355 HAPKRSSISN 364


>gi|269795407|ref|YP_003314862.1| putative permease [Sanguibacter keddieii DSM 10542]
 gi|269097592|gb|ACZ22028.1| predicted permease [Sanguibacter keddieii DSM 10542]
          Length = 436

 Score = 81.8 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/336 (16%), Positives = 109/336 (32%), Gaps = 18/336 (5%)

Query: 15  MIMFIILVSLYFLKG-----FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           +I+  I + L           F  +  AL+      P+ + +             +A +S
Sbjct: 34  LIIVTIAIGLVVFATSRVQLVFIALFVALVFSAVLRPVVNIYAKVMP--RALATALALLS 91

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + +    L ++      + ++L  +                 +P  +   ++       
Sbjct: 92  GILVIGGLLAYVVASVAGQWQKLSDQFESGTNQIFEFLEN-GPLPFSITVDDMRGWFDDG 150

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            Q ++  +           I   A        +   ++        FF   G S+     
Sbjct: 151 LQWVQDHAGD---------IAGTAFEQAGTVFEIFTALALAFFCTIFFLARGDSMWSWFL 201

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +         WK +             G  IIA+ +G++ G    + GVP    L V+  
Sbjct: 202 NQLPSRLRDTWKVVGGAGWYTFSGYTRGTVIIAVTDGILAGIFLTILGVPLAAPLAVLVL 261

Query: 250 IMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I A IP  GAP +     +  L    I+ A  + +  A+        L+P ++G  + L 
Sbjct: 262 IGAFIPLIGAPAAMVIAMVVALAADGIWKAALVGVGIALIGQFEGHVLQPLVMGRQVSLH 321

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +     +  G    G+LG  I   L+A+   ++ +
Sbjct: 322 PVVVAISVTAGTLLSGILGAVIAVPLVAVAWAVYSQ 357


>gi|294631156|ref|ZP_06709716.1| permease [Streptomyces sp. e14]
 gi|292834489|gb|EFF92838.1| permease [Streptomyces sp. e14]
          Length = 459

 Score = 81.8 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/307 (12%), Positives = 105/307 (34%), Gaps = 19/307 (6%)

Query: 17  MFIILVSLYFLKGFFAPV---LSALIIGFTSWPIYSSFISKKEES---STFLAVIATVSV 70
           + ++  +++ L    + V   + A +       +    +++             +  +  
Sbjct: 78  LLVLAGTVWVLMRVISAVQLVVLAFVAALLITALMQPTVARLRRHGLPRGPATALTAILG 137

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             +  +   F+ +  M  +  L +++         + +WL + P  +   ++     S  
Sbjct: 138 FVIMGLIGWFVTWQVMENIDNLSNQIQDGIDE---LRKWLLNSPFHVTDKQINQIAKSLR 194

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           +++   ++                    + ++    I+  I +  F   DG  I +    
Sbjct: 195 EAIGANTDQITSAGLEGV---------TVVVEALTGILLTIFSTLFLLYDGRRIWEWTLK 245

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L                 + + +   G  I+A+ + + +G   +   VP  V L V   +
Sbjct: 246 LVPAAARPGVAGAGPRAWRTLTAYVRGTVIVALIDAIFIGLGIYFLNVPMAVPLAVFIFL 305

Query: 251 MAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            A IP    +   A+++ + L+   +F A  + +       I    L+PF++G  +++  
Sbjct: 306 FAFIPLVGAVVSGALAVVVALVTQGVFTAVMVLVVVLAVQQIEGHVLQPFILGRAVRVHP 365

Query: 310 LPTFFGL 316
           L     +
Sbjct: 366 LAVVLSV 372


>gi|194446794|ref|YP_002041754.1| permease PerM [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194405457|gb|ACF65679.1| permease PerM [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 355

 Score = 81.8 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/347 (14%), Positives = 115/347 (33%), Gaps = 14/347 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +P+ I   +I+      L+F  G  AP+L A+++ +   WP  +   +       
Sbjct: 10  RRRFSDPEAIALLVILVAGFSILFFFSGLLAPLLVAIVLAYLLEWP-TARLQAIGCSRRW 68

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             +++  + V  L ++  + +       +  +     + N+            P  M A 
Sbjct: 69  AASIVLILFVGILLLMAFVVMPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +     +    +  + ++ +K +    +           L   + ++ + + +FF  +D
Sbjct: 129 IIDAMAENMRTRMLNMGDSVVKYSLASLV---------GLLTLAVYLVLVPLMVFFLVKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +          ++   + + I +   G  +  +  G+     + L G+  
Sbjct: 180 KEQMLNAVRRVLPRNRGLAG-QVWNEMNQQITNYIRGKVLEMVVVGVATWLGFLLFGLNY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V+     +IP  GA +    V  + L   G        F    I   +    L P
Sbjct: 239 SLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGLGTEFWSCFAVYLIIQALDGNLLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L    + L  L     +V      G  G+F    L  LI  +    
Sbjct: 299 VLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVHAW 345


>gi|261866811|ref|YP_003254733.1| PerM [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412143|gb|ACX81514.1| PerM [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 353

 Score = 81.8 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/347 (15%), Positives = 117/347 (33%), Gaps = 13/347 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +PQ +  + I+F   V++YF     AP+L A+++ +   WP+      K +    
Sbjct: 10  RRRFSDPQAMGLFAILFFGFVAIYFFSDLIAPLLVAIVLAYLLEWPV-RLLNEKLKCPRL 68

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               +   S   L  + +L L      +M  L+S +            WL  +P      
Sbjct: 69  LATGLVIGSFTGLVFLVVLVLIPNLWTQMVNLLSDLPHMFNR---FNEWLLSLPVRYPDM 125

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                  S   ++K       ++     +    +   +    + + ++      FF  +D
Sbjct: 126 IDAQTVESIFGTVKEKILGLGESALKLSLASIMNLVTLGIYAFLVPLMV-----FFLLKD 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +             K+   + + I +   G  +  +   +V  + + + G+  
Sbjct: 181 KRQLMDGVSRFLPR-NRTLASKVWVEMQQQIANYIRGKLVEILVVTIVTYAIFLIFGLNY 239

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V   +  ++P  GA +    V +  + + G+      + +   +   +    L P
Sbjct: 240 PLLLAVAVGLSVLVPYIGAVLVTIPVVLVAIFQFGDTHTFWYIVIAFVVSQLLDGNLLVP 299

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           FL    + L  L     ++      G  G+F    L  L+  +    
Sbjct: 300 FLFSEAVNLHPLVIIIAVLIFGGLWGFWGVFFAIPLATLVKAVVNAW 346


>gi|89069901|ref|ZP_01157235.1| hypothetical protein OG2516_06352 [Oceanicola granulosus HTCC2516]
 gi|89044577|gb|EAR50696.1| hypothetical protein OG2516_06352 [Oceanicola granulosus HTCC2516]
          Length = 380

 Score = 81.8 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 116/328 (35%), Gaps = 16/328 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++  M + ++ ++L   K    PV  AL I     P+     S    +  +  ++A +
Sbjct: 12  NSLLALMAVILVGLALQVTKPVMVPVTLALFIALVVSPVEDRIASLFPRNVRWPGLLAAM 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +V+       + + + G   +   +S V       I           G    +L      
Sbjct: 72  AVILAVFATFISVIWIGARRIGGALSGVPGRINQYIREANLEERTMFGADIEQL------ 125

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                     + +   GI F    A+R         L++   +  +     +    +++L
Sbjct: 126 ---------ASMVSDRGIAFASGLATRVLNSASTMVLTLALTVFLVLLMLTEAPRAAKKL 176

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           +++ E    + WK   R++ + +R   +    +     +   +  W   VP  +  G++ 
Sbjct: 177 EAVSEAEETSRWKNAIRVIARKLRLYLMARAALGALTAVCYVAWLWFNDVPLLLVWGLLV 236

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + + +P  G+ +S      Y L+ G   N   + +   +   ++   + P + GG + L
Sbjct: 237 FLFSFVPNLGSVLSGLLPVSYALLTGEGGNIWLIIVGLLVIEQVIGNFVDPHVQGGQVSL 296

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             L     ++      G LG  +G  +M
Sbjct: 297 SPLVILLSVIFWGWLWGPLGALLGVPVM 324


>gi|127512771|ref|YP_001093968.1| hypothetical protein Shew_1843 [Shewanella loihica PV-4]
 gi|126638066|gb|ABO23709.1| protein of unknown function UPF0118 [Shewanella loihica PV-4]
          Length = 366

 Score = 81.8 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/305 (14%), Positives = 103/305 (33%), Gaps = 11/305 (3%)

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
             +T  +++  + V  + ++    +       +  +     + ++  I +  ++   P  
Sbjct: 65  NRTTGASLVLVLFVGVMLLITFGLVPSIWRQGVALVTDLPTMLDKGFITLKGFVEQYPQF 124

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
           +   +L         +     +  L T  I  + +    +    L   +  I + + +FF
Sbjct: 125 LSVEQL--------DASVGELKKLLDTQHILDLGKQLIGYSASLLVLMVYAILVPLLVFF 176

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
           F +D   + +              +K+   + + I +   G  I  +  G      + + 
Sbjct: 177 FLKDKDELVRGSKRFIP-ANRDLARKVWLEMNQQIFNYIRGKVIEIVIIGAASYIFFAIM 235

Query: 237 GVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-K 294
            +     LGV+T    +IP  GA +    +++    +  I       + G   +  +D  
Sbjct: 236 DLRYAALLGVLTGFSVLIPYVGATLVTLPIALVAFFQWGISPEFGYLMLGYGIIQALDGN 295

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            L P L    + L  +     ++      G+ G+F    L +L+  +      A K   E
Sbjct: 296 LLVPILFSDAVDLHPVFIIAAVLVFGGLWGVWGVFFAIPLASLVKAVVNAWPKADKPELE 355

Query: 355 KISSN 359
           K  + 
Sbjct: 356 KSKTE 360


>gi|15604477|ref|NP_220995.1| putative permease PerM [Rickettsia prowazekii str. Madrid E]
 gi|8928516|sp|Q9ZCT3|Y630_RICPR RecName: Full=UPF0118 membrane protein RP630
 gi|3861171|emb|CAA15071.1| PUTATIVE PERMEASE PERM HOMOLOG (perM) [Rickettsia prowazekii]
 gi|292572259|gb|ADE30174.1| Permease PerM-like protein [Rickettsia prowazekii Rp22]
          Length = 351

 Score = 81.8 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 57/352 (16%), Positives = 120/352 (34%), Gaps = 11/352 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N   +   + + + +     +     P   A II +   P      SK E S+   + I
Sbjct: 1   MNRTAVFWLVFLTLFISGFMLITDTIKPFFIAFIISYLLQPAIYFIESKLEISNKLASSI 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + +F +    L          +  ++     +      +L          ++++ 
Sbjct: 61  IYLIFLSIFFLIFTILIPI-------IYGQIFTFINNIPKYKNYLQSEILPPIMGKIYSI 113

Query: 126 HLSHPQSLKILSETFLKT--NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                  +K     F+ +    +  I     R+ +I ++  +  + + I LF+F RD   
Sbjct: 114 EPDIADKIKHSLSDFINSIFTILGSIANNFWRYTIITINIFVLFLLIPIILFYFLRDWDK 173

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           I   ++SL          +I   +  ++ S   G   I +        A+ L G+   + 
Sbjct: 174 IITNMESLLPIKTRPKILEILSAINNLLSSYIRGQLNICLLLSTYYSIAFTLIGIDLALL 233

Query: 244 LGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           LG++T  + +IP           + I  L  G       + +   I        L P ++
Sbjct: 234 LGILTGFLVIIPLLGTFISFLLTLIIGYLTFGITSKLLYIMIIYLIGNIGESYILTPKII 293

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G  I L  L   F +       G++G+F    +  +  ++    I   K +K
Sbjct: 294 GDKIGLHPLWIIFAIFACGSLFGIIGIFFAIPIAGITKILLLNLIKFYKSSK 345


>gi|15642161|ref|NP_231793.1| permease PerM, putative [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121586788|ref|ZP_01676570.1| permease PerM, putative [Vibrio cholerae 2740-80]
 gi|121727178|ref|ZP_01680345.1| permease PerM, putative [Vibrio cholerae V52]
 gi|147673150|ref|YP_001217681.1| putative permease PerM [Vibrio cholerae O395]
 gi|153801642|ref|ZP_01956228.1| permease PerM, putative [Vibrio cholerae MZO-3]
 gi|153818817|ref|ZP_01971484.1| permease PerM, putative [Vibrio cholerae NCTC 8457]
 gi|153822602|ref|ZP_01975269.1| permease PerM, putative [Vibrio cholerae B33]
 gi|153825615|ref|ZP_01978282.1| permease PerM, putative [Vibrio cholerae MZO-2]
 gi|153828640|ref|ZP_01981307.1| putative permease PerM [Vibrio cholerae 623-39]
 gi|227082287|ref|YP_002810838.1| putative permease PerM [Vibrio cholerae M66-2]
 gi|229507757|ref|ZP_04397262.1| hypothetical protein VCF_002986 [Vibrio cholerae BX 330286]
 gi|229512007|ref|ZP_04401486.1| hypothetical protein VCE_003417 [Vibrio cholerae B33]
 gi|229513809|ref|ZP_04403271.1| hypothetical protein VCB_001454 [Vibrio cholerae TMA 21]
 gi|229519143|ref|ZP_04408586.1| hypothetical protein VCC_003171 [Vibrio cholerae RC9]
 gi|229522114|ref|ZP_04411531.1| hypothetical protein VIF_002659 [Vibrio cholerae TM 11079-80]
 gi|229524160|ref|ZP_04413565.1| hypothetical protein VCA_001746 [Vibrio cholerae bv. albensis
           VL426]
 gi|229528829|ref|ZP_04418219.1| hypothetical protein VCG_001917 [Vibrio cholerae 12129(1)]
 gi|229607302|ref|YP_002877950.1| hypothetical protein VCD_002213 [Vibrio cholerae MJ-1236]
 gi|254226899|ref|ZP_04920467.1| permease PerM, putative [Vibrio cholerae V51]
 gi|254291395|ref|ZP_04962188.1| permease PerM, putative [Vibrio cholerae AM-19226]
 gi|254849244|ref|ZP_05238594.1| permease PerM [Vibrio cholerae MO10]
 gi|255745105|ref|ZP_05419054.1| permease PerM [Vibrio cholera CIRS 101]
 gi|262153505|ref|ZP_06028635.1| permease PerM [Vibrio cholerae INDRE 91/1]
 gi|262167515|ref|ZP_06035221.1| permease PerM [Vibrio cholerae RC27]
 gi|297582058|ref|ZP_06943977.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|298497820|ref|ZP_07007627.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9656715|gb|AAF95307.1| permease PerM, putative [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121548955|gb|EAX58994.1| permease PerM, putative [Vibrio cholerae 2740-80]
 gi|121630423|gb|EAX62816.1| permease PerM, putative [Vibrio cholerae V52]
 gi|124122819|gb|EAY41562.1| permease PerM, putative [Vibrio cholerae MZO-3]
 gi|125620581|gb|EAZ48947.1| permease PerM, putative [Vibrio cholerae V51]
 gi|126510660|gb|EAZ73254.1| permease PerM, putative [Vibrio cholerae NCTC 8457]
 gi|126519850|gb|EAZ77073.1| permease PerM, putative [Vibrio cholerae B33]
 gi|146315033|gb|ABQ19572.1| putative permease PerM [Vibrio cholerae O395]
 gi|148875911|gb|EDL74046.1| putative permease PerM [Vibrio cholerae 623-39]
 gi|149740766|gb|EDM54865.1| permease PerM, putative [Vibrio cholerae MZO-2]
 gi|150422725|gb|EDN14679.1| permease PerM, putative [Vibrio cholerae AM-19226]
 gi|227010175|gb|ACP06387.1| putative permease PerM [Vibrio cholerae M66-2]
 gi|227014058|gb|ACP10268.1| putative permease PerM [Vibrio cholerae O395]
 gi|229332603|gb|EEN98089.1| hypothetical protein VCG_001917 [Vibrio cholerae 12129(1)]
 gi|229337741|gb|EEO02758.1| hypothetical protein VCA_001746 [Vibrio cholerae bv. albensis
           VL426]
 gi|229341039|gb|EEO06044.1| hypothetical protein VIF_002659 [Vibrio cholerae TM 11079-80]
 gi|229343832|gb|EEO08807.1| hypothetical protein VCC_003171 [Vibrio cholerae RC9]
 gi|229348990|gb|EEO13947.1| hypothetical protein VCB_001454 [Vibrio cholerae TMA 21]
 gi|229351972|gb|EEO16913.1| hypothetical protein VCE_003417 [Vibrio cholerae B33]
 gi|229355262|gb|EEO20183.1| hypothetical protein VCF_002986 [Vibrio cholerae BX 330286]
 gi|229369957|gb|ACQ60380.1| hypothetical protein VCD_002213 [Vibrio cholerae MJ-1236]
 gi|254844949|gb|EET23363.1| permease PerM [Vibrio cholerae MO10]
 gi|255736935|gb|EET92331.1| permease PerM [Vibrio cholera CIRS 101]
 gi|262024087|gb|EEY42782.1| permease PerM [Vibrio cholerae RC27]
 gi|262030742|gb|EEY49376.1| permease PerM [Vibrio cholerae INDRE 91/1]
 gi|297533753|gb|EFH72595.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297542153|gb|EFH78203.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 354

 Score = 81.8 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 56/349 (16%), Positives = 121/349 (34%), Gaps = 14/349 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P       I+    +++YF     AP+L A+++ +   WP+    + +     T   +I
Sbjct: 15  DPHAASLVAILLFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQ--LRRLRIPRTLAVII 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
                  L I+ +  L      ++  L++ V           ++++ +P           
Sbjct: 73  VITVFTGLMILAVFGLVPTIWKQVGNLINDVPNMYNGTQ---KFITSLPE----RYPELA 125

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           HL   +S+   ++  +   G   +    +   +      + +I + + +FF  +D   + 
Sbjct: 126 HLEIVESVIGNAKNKVLGMGESVVKGSLASL-VSLATLGVYLILVPLLVFFLLKDKQEML 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +          K+   + + I +   G  +  +  G V    + +  +   V L 
Sbjct: 185 RMASGILPR-NRKLANKVWEEMNQQISNYIRGKVLEIVIVGTVSYITFAILDLRYSVLLA 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V   +  +IP  GA      V+I  L + G       L +   I   +    L P L   
Sbjct: 244 VAVGLSVLIPYIGAAAVTVPVAIVALFQWGLTPQFYTLLIAYGIIQALDGNVLVPVLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            + L  +     ++      G  G+F    L  L+  +WK      +E 
Sbjct: 304 AVNLHPVAIIIAVLVFGGLWGFWGVFFAIPLATLVKAVWKALPSIDEEP 352


>gi|318061004|ref|ZP_07979725.1| hypothetical protein SSA3_23870 [Streptomyces sp. SA3_actG]
 gi|318079871|ref|ZP_07987203.1| hypothetical protein SSA3_25091 [Streptomyces sp. SA3_actF]
          Length = 465

 Score = 81.8 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/347 (13%), Positives = 113/347 (32%), Gaps = 21/347 (6%)

Query: 17  MFIILVSLYF-------LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +++            L G    VL A  +     P  S   ++          +  + 
Sbjct: 12  ALLLIACFQLGTWAFHRLTGLLINVLIAFFLALAIEPAVSWMSAR-GMRRGAATGLVFLG 70

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+      +  L      +++ +V       ++   V +W++    G + +EL    +  
Sbjct: 71  VLIFAAGFVTLLGSMLAGQIQNMVEDFP---KYLDSVIKWVN----GTFHTELSRLEVQD 123

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                   + +++ +    +   A   G +F    L      +  F+F  DG  + + L 
Sbjct: 124 SVLHSDWLQRYVRNSASGVLDVSAQVLGGLFQLLTLL-----LFAFYFAADGPRLRRALC 178

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           S+      A   +   I             ++A+  G+     +   G+P   ALGV   
Sbjct: 179 SVLPPAKQAEVLRAWEIAVDKTGGYLYSRGLMALISGIAHYILFQALGIPYAPALGVWVG 238

Query: 250 IMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +++  IP        A+ + +    + + A  + ++  I     +  L+P L    + + 
Sbjct: 239 LVSQFIPTIGTYLAGALPMLIAFTVDPWYAVWVLVFVVIYQQFENYLLQPKLTARTVDIH 298

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
               F  ++ G   +G +G  +    +A +       +       + 
Sbjct: 299 PAVAFGSVIAGTALLGAVGALVSIPAVATLQAFLAAYVKRYDVTDDP 345


>gi|183602050|ref|ZP_02963419.1| hypothetical integral membrane protein in upfo118 [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|241190536|ref|YP_002967930.1| hypothetical protein Balac_0492 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241195942|ref|YP_002969497.1| hypothetical protein Balat_0492 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218935|gb|EDT89577.1| hypothetical integral membrane protein in upfo118 [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|240248928|gb|ACS45868.1| Hypothetical permease [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250496|gb|ACS47435.1| Hypothetical permease [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|295793523|gb|ADG33058.1| Hypothetical permease [Bifidobacterium animalis subsp. lactis V9]
          Length = 529

 Score = 81.8 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/319 (13%), Positives = 97/319 (30%), Gaps = 15/319 (4%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           ++ AL +     P+    I          +V     ++ + IV +       + +M  +V
Sbjct: 59  IVIALFLALAVEPLVIRLIRH-GWKRGVASVTCLAGLLVIVIVLMALFGNMFVQQMISMV 117

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             +              +               L     L       +K + +      A
Sbjct: 118 KGLPDLYNQFAAFVDAKTHFK------------LPEMNDLGGEIMKNIKGSWVTDFAGQA 165

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
               M  L   L++   ++  F+    G  + + +           +  +  +V   I  
Sbjct: 166 VSTTMGVLGQILNLTTALMVAFYISIAGPKLRRSVCQWIAPRSQRRFLMVWTVVQDQISG 225

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA-MIP-GGAPISFTAVSIYLLI 271
                +I+A      +     +  VP  + L +   I++  +P  G  I      ++   
Sbjct: 226 FLFSRSILAAINAACMSVFLMIIKVPYWLPLALFCGIVSQFVPTLGTYIGGALPVLFAWG 285

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
           +  I  A  + ++  +   I +  L P +    + L     F  ++      G  G F+ 
Sbjct: 286 ERGIGYAIGVVVFITVYQQIENLVLSPKISERTMDLNPCIAFLTVLFFGSIFGAAGAFLA 345

Query: 332 PVLMALIAVIWKESIMAIK 350
             + A I V+ K ++    
Sbjct: 346 LPITASIQVLLKVAMKRYP 364


>gi|16079968|ref|NP_390794.1| permease [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310857|ref|ZP_03592704.1| hypothetical protein Bsubs1_15911 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315183|ref|ZP_03596988.1| hypothetical protein BsubsN3_15812 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320100|ref|ZP_03601394.1| hypothetical protein BsubsJ_15723 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324382|ref|ZP_03605676.1| hypothetical protein BsubsS_15882 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321312450|ref|YP_004204737.1| putative permease [Bacillus subtilis BSn5]
 gi|8928522|sp|O34991|YTVI_BACSU RecName: Full=UPF0118 membrane protein ytvI
 gi|2293327|gb|AAC00405.1| YtvI [Bacillus subtilis]
 gi|2635381|emb|CAB14876.1| putative permease [Bacillus subtilis subsp. subtilis str. 168]
 gi|291485351|dbj|BAI86426.1| hypothetical protein BSNT_04258 [Bacillus subtilis subsp. natto
           BEST195]
 gi|320018724|gb|ADV93710.1| putative permease [Bacillus subtilis BSn5]
          Length = 371

 Score = 81.8 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 55/333 (16%), Positives = 108/333 (32%), Gaps = 14/333 (4%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST-----------FLAVIATVS 69
           + + Y+      P L ALI+     P+            T             A      
Sbjct: 23  IAAAYYSFPLTYPFLIALILSSVIHPVVDYLDKVTGFPRTINVLGVLAFFLLAAFGVLTI 82

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++   +    +L       +   +S         I        +      +      ++H
Sbjct: 83  LVAEIVTGTAYLAKTLPPHISTFISYCEKLFTTHIQPLYNELTLLFQELETNQQASIVTH 142

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            Q+L   +        +  I     RF  +  +    +IF ++A FF  +D   +   L 
Sbjct: 143 IQTLGDSAAKNAG-LLLSHILEMIPRFFALLPNTAAVLIFSLLATFFMTKDWHKLKAMLV 201

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +      A  K IS  + K +        ++     +++     L  V     +  +  
Sbjct: 202 LILPDRVTANSKAISSELKKAMTGFIKAQAVLVFITMVIVFIGLSLLKVEHAATIAFLIG 261

Query: 250 IMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++ ++P  GA   F    +YL I G +  A  + +   + + I  +   P ++   I + 
Sbjct: 262 LVDLLPYLGAGSVFVPWILYLSITGQLPQAIGIGILY-LVVLIQRQLTEPKILSKSIGID 320

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L T   L  G +  G LGL  GP ++ +I   
Sbjct: 321 PLATLIALFAGFKLFGFLGLIAGPAVLVIIQAF 353


>gi|75762603|ref|ZP_00742452.1| Hypothetical membrane spanning protein [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74489912|gb|EAO53279.1| Hypothetical membrane spanning protein [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 313

 Score = 81.8 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/306 (14%), Positives = 110/306 (35%), Gaps = 5/306 (1%)

Query: 36  SALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSK 95
            A ++ +   P + S + KK  S         + V+ LF+  ++ +      ++  L+  
Sbjct: 1   MAGVLFYILHP-FVSLLEKKGVSRIVSIASIYLIVIGLFVFLVVTVIPIIKDQIDALIDN 59

Query: 96  VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASR 155
           +           R      G         ++L+   +  +   T   T  +  +    + 
Sbjct: 60  LPYFGHEIEQAARRF----GESNLLGKIQENLNINVANMVKDYTVDFTKSLSSVTGNVTG 115

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
           F     +  L+ + +   LF+  +DG  +                 +I   +   I S  
Sbjct: 116 FLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQRQPAAMRILDDMHYAISSYI 175

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNI 275
            G  I+++  G++L   Y + G+   V L ++  I+ ++P   PI     ++ +    + 
Sbjct: 176 RGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVPYVGPIIAITPALIIAFIDSP 235

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
                + +   +      K + P ++G  + +  +   F ++      G++G+ +     
Sbjct: 236 AMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFIILTAGNLFGIMGIILAIPGY 295

Query: 336 ALIAVI 341
           A++ V+
Sbjct: 296 AILKVL 301


>gi|323705254|ref|ZP_08116829.1| protein of unknown function UPF0118 [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535156|gb|EGB24932.1| protein of unknown function UPF0118 [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 343

 Score = 81.8 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/341 (14%), Positives = 132/341 (38%), Gaps = 16/341 (4%)

Query: 14  WMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +I+ ++L   Y     +K    P+L ++I+ +   PI +    KK        +I    
Sbjct: 14  IIIILVVLYFFYMNANKIKEILLPLLVSIILAYLINPIVTYIE-KKGIKRVQSIIIVYFL 72

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW-ASELWTKHLS 128
           +M +  +  +F+F   + EM  L   +          P ++S +   +      +  +L 
Sbjct: 73  LMIVVSLFAIFIFPVIVNEMSNLFKMI----------PDYISLLNDKVNNIKNDYLSYLP 122

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +   +    +    ++ I   A +  +    + +++I   I  F+  +D   +   +
Sbjct: 123 KEFNKIFIKRANMFDKQMELIVDRAMQSVISMTGHLVNLILSPIITFYLLKDKEVLKNGI 182

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           +          + KI + +  V+ +       I++    +      +  V   + +G++ 
Sbjct: 183 NEFIPQKMRETFLKILKDIDYVLSNYIRSQIYISLIVTFLTSIGLMILRVKYSLLIGILA 242

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I  +IP   PI  +  ++ + +  + +     F+   +   I    + P ++   + L 
Sbjct: 243 GIFNVIPYFGPILGSIPAVVMGLMDSFYKGVWSFVVFFLVQQIESAIIAPKIMSDNVDLH 302

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            +     L+ G +  G+LG+ +   ++A++ VI+K+  +  
Sbjct: 303 PITVIIALLVGEQFFGILGMLLSVPVVAVVKVIFKDIFIKA 343


>gi|315606358|ref|ZP_07881374.1| membrane protein [Prevotella buccae ATCC 33574]
 gi|315252049|gb|EFU32022.1| membrane protein [Prevotella buccae ATCC 33574]
          Length = 387

 Score = 81.8 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 64/370 (17%), Positives = 136/370 (36%), Gaps = 17/370 (4%)

Query: 1   MRETMLNPQGIMRWM-IMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M E  +    ++RW+ I  +IL  LY    L G   P   A +  +  +PI      +  
Sbjct: 1   MNEQKITFDKLVRWVGIGALILAVLYLVNYLSGALLPFFIAWLFAYLLYPIVKFIQYRLH 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
                LA+I T+ ++   I  +++L    M+E  E + +V     H              
Sbjct: 61  VKVRALAIIVTMILVISVIAGVIYLIIPPMIEQFEKLGEVTTKWLHTTTHTNN-----LT 115

Query: 117 MWASELWTKHLSHPQSLKILSE-TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
            +  E    + S  +      + +      +  +  F  +   + +    S+I ++  +F
Sbjct: 116 TYIQEWLQANQSEIEKFFKSRDFSDAIKTAMPRLFSFVGQTASVVMSIIASMITLLY-MF 174

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F   D   ++Q    +       +W ++ + V + + +   G  ++A+  G++    + +
Sbjct: 175 FILLDYEHLTQNWIRIFPQKNRPFWHELMQDVERELNNYIRGQGLVALCMGIMFCIGFTI 234

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--- 292
            G P  + LG++  I+ ++P     +    +   ++K         +++G   +  +   
Sbjct: 235 IGFPMAIGLGILIGILDLVPYLHTFALIPTAFLAMLKAADTGQNFWWVFGLAVIVFIVVQ 294

Query: 293 ---DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
              D    P ++G  + L        L      +G +GL I   L  LI   W+  +   
Sbjct: 295 IITDFITTPKIMGKAMGLNPAILLLSLSVWGTLLGFIGLIIALPLTTLIIAYWQRYVTKE 354

Query: 350 KENKEKISSN 359
              K    SN
Sbjct: 355 HAPKRSSISN 364


>gi|260886752|ref|ZP_05898015.1| conserved hypothetical protein [Selenomonas sputigena ATCC 35185]
 gi|330839431|ref|YP_004414011.1| protein of unknown function UPF0118 [Selenomonas sputigena ATCC
           35185]
 gi|260863604|gb|EEX78104.1| conserved hypothetical protein [Selenomonas sputigena ATCC 35185]
 gi|329747195|gb|AEC00552.1| protein of unknown function UPF0118 [Selenomonas sputigena ATCC
           35185]
          Length = 342

 Score = 81.8 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/350 (13%), Positives = 119/350 (34%), Gaps = 17/350 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I+  +   ++L + +F       +  +L++     P       K+       A +  ++
Sbjct: 9   SIILAITFTLLLSAFWFFPDLAFIIFLSLLLQLLLQPPVDFLQRKRVPR-VLAAGLIVIA 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + L    ++ L    +   +  VS +             L +IP    +  L ++    
Sbjct: 68  FIALLTGLVVLLSLSFVPTFRNFVSDLPNITLS-------LQNIPFVSDSDLLRSELSDV 120

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              L+ L    LK++    +               ++ + +I   F+  +DG +I   L 
Sbjct: 121 LADLRSLGTDLLKSSLTFLLE---------IFGKFMAFVIIIFVTFYLLKDGKNIRNWLA 171

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L           +   + + +R       ++    G V+   +   G+P       ++ 
Sbjct: 172 GLFPQASRRRVLNLFNDILRALRVYIFSQIVMCAITGTVVFLYFEFTGLPYASVFAFLSG 231

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +   +P   P + +A  I+L    +        L+  +   +    + P L+G  + L  
Sbjct: 232 LGEFVPVLGPTAASAFGIFLTATESRGLVLQTALFYIVLTQVNHNFVYPTLIGKSLNLHP 291

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +    G++ G   +G  G+F+    + ++ ++  +     +E   +    
Sbjct: 292 VAIILGVIFGGEILGPAGMFLAVPFIVIVKLVIADIYHDRQEVVRQNDEE 341


>gi|192292201|ref|YP_001992806.1| hypothetical protein Rpal_3832 [Rhodopseudomonas palustris TIE-1]
 gi|192285950|gb|ACF02331.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           TIE-1]
          Length = 372

 Score = 81.8 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/339 (12%), Positives = 106/339 (31%), Gaps = 21/339 (6%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I  ++++ L+ L+       +A +I        +    +   S     +I  ++++    
Sbjct: 41  IALVLMIVLWVLRDILLLGFAAALIACVLRGAANVLHRRTGLSDGLSLLIVVMTIVLALG 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ-SLK 134
             L +       E+ ++  ++    Q                    LW +       +L 
Sbjct: 101 ALLFWRGTAIANEVAQMYDQLTAQMQS-------------------LWQQMSGSGWPALL 141

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                 L  +    +  +        L    S++ ++    F      S       L   
Sbjct: 142 AKQLRNLSESARKNLTGYVPGVASSVLGIGGSVVVVLATALFLAISPRSYMDGALRLLPV 201

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            +    + +       ++  FLG     +   L++G   +L GVP    L ++  ++  +
Sbjct: 202 QWRPRGRHVMLETGSTLQLWFLGQLADMLIVALLIGVGLYLLGVPMAPTLALLAGLLNFV 261

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    ++    ++ + +  +   A  + L       +    + P +    + L    T  
Sbjct: 262 PYVGALAGAVPAVLVALAQSPSLALWVALLFICVQTLEGNVVAPLIQRRTVSLLPALTIL 321

Query: 315 GLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKEN 352
                    G++GL I  P+  AL+  +    I  + E 
Sbjct: 322 SQTILGTLFGVVGLVIATPLTAALMTAVRMIYIEDLLER 360


>gi|293391679|ref|ZP_06636013.1| PerM family permease [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290952213|gb|EFE02332.1| PerM family permease [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 353

 Score = 81.8 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/347 (15%), Positives = 117/347 (33%), Gaps = 13/347 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +PQ +  + I+F   V++YF     AP+L A+++ +   WP+      K +    
Sbjct: 10  RRRFSDPQAMGLFAILFFGFVAIYFFSDLIAPLLVAIVLAYLLEWPV-RLLNEKLKCPRL 68

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               +   S   L  + +L L      +M  L+S +            WL  +P      
Sbjct: 69  LATGLVIGSFTGLVFLVVLVLIPNLWTQMVNLLSDLPHMFNR---FNEWLLSLPVRYPDM 125

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                  S   ++K       ++     +    +   +    + + ++      FF  +D
Sbjct: 126 IDAQTVESIFGTVKEKILGLGESALKLSLASIMNLVTLGIYAFLVPLMV-----FFLLKD 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +             K+   + + I +   G  +  +   +V  + + + G+  
Sbjct: 181 KRQLMDGVSRFLPR-NRTLASKVWVEMQQQIANYIRGKLVEILVVTVVTYAIFLIFGLNY 239

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V   +  ++P  GA +    V +  + + G+      + +   +   +    L P
Sbjct: 240 PLLLAVAVGLSVLVPYIGAVLVTIPVVLVAIFQFGDTHTFWYIVIAFVVSQLLDGNLLVP 299

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           FL    + L  L     ++      G  G+F    L  L+  +    
Sbjct: 300 FLFSEAVNLHPLVIIIAVLIFGGLWGFWGVFFAIPLATLVKAVVNAW 346


>gi|289209151|ref|YP_003461217.1| hypothetical protein TK90_1990 [Thioalkalivibrio sp. K90mix]
 gi|288944782|gb|ADC72481.1| protein of unknown function UPF0118 [Thioalkalivibrio sp. K90mix]
          Length = 372

 Score = 81.8 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 118/360 (32%), Gaps = 12/360 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ ++   ++    + + F     AP+L++LII +         I         
Sbjct: 10  RRHFTDPQVVILAFLLLAGFLIIVFAGRILAPLLASLIIAYLLEGAVQKLIRLHVPR-LL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  +  + L +  L  +      ++ +LV ++    + G  +   L +    +   E
Sbjct: 69  AVTIVLLVFLALTVAALFSVVPLMSAQVTQLVRELPGMIREGQALLLQLPERYPQLITDE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              + +   Q+   +            +  F+       +D  + +I + + +FF  +D 
Sbjct: 129 QVRELMGAIQAEATML--------GQRVVSFSLAGARHLVDVVIYLIVVPLMVFFMLKDR 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I   + S           ++ R V   I S   G  I  +    V    +   G+   
Sbjct: 181 DLILDWVRSFMPRDS-HLASEVWREVNVKIASYVRGKFIEILIVWAVSFLTFNWFGLEYA 239

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPF 299
           V L  +  I  +IP  GA +    V+     + G       L +   +  F+    L P 
Sbjct: 240 VLLSFMVGISVIIPYIGAAVVTIPVAAVAYFQFGLSSEFAWLLIAYGVIQFLDGNVLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           L    + L  +     +       GL G+F    L  L+  + K      K    + +  
Sbjct: 300 LFSEVVNLHPVAIIAAVFVFGGIWGLWGVFFAIPLATLVHAVIKSWPRTDKLEARREAEQ 359


>gi|284044322|ref|YP_003394662.1| hypothetical protein Cwoe_2868 [Conexibacter woesei DSM 14684]
 gi|283948543|gb|ADB51287.1| protein of unknown function UPF0118 [Conexibacter woesei DSM 14684]
          Length = 400

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 82/252 (32%), Gaps = 2/252 (0%)

Query: 96  VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK-TNGIDFIPRFAS 154
           V  A      VP +++D+   +  +E           +  L E   +  N +D      S
Sbjct: 112 VEEATNLADDVPGYVNDLQEWVNNNERLKDLDRQYDIVDRLRERAEELPNHLDDAASTLS 171

Query: 155 RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRST 214
             G   +    +   ++I   F    G                   ++    +   + + 
Sbjct: 172 DVGGTIVGSLFAAFNILILSIFMVASGRRWVDLAIGFARPEHVPRIRRAVDRIGIAVGNY 231

Query: 215 FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKG 273
             G  + A   G+       + GVP    L V+TA+  +IP  GA I+   V I      
Sbjct: 232 VGGALLQATIAGVTTFVVLTILGVPFAAPLAVLTALFDLIPLVGATIAAVLVGIVTAFHD 291

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
                    +W      I +  ++P +    +++        ++ G    G++G  +   
Sbjct: 292 FPVATIVWVIWAIAYQQIENNVIQPQIQRRAVEIHAFAVLVSVLFGATLFGIVGALLAIP 351

Query: 334 LMALIAVIWKES 345
           + A I +  +E 
Sbjct: 352 VAASIQIALREW 363


>gi|190573154|ref|YP_001970999.1| putative transmembrane protein [Stenotrophomonas maltophilia K279a]
 gi|190011076|emb|CAQ44685.1| putative transmembrane protein [Stenotrophomonas maltophilia K279a]
          Length = 389

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 59/348 (16%), Positives = 132/348 (37%), Gaps = 16/348 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +   +I   ++ L     P + AL + +   P+     +                V+ +
Sbjct: 19  ILFAGLIGWVVWLLAPILTPFVLALALAWLGDPLVDRIEATGRSR--------MTGVVLV 70

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL--SDIPGGMWASELWTKHLSHPQ 131
           F   +L +    ++ +  +  ++            WL    IP     + L       P 
Sbjct: 71  FAAMVLVIVALLLVLVPMIERQITTLIAVAPQAQAWLMEKGIPWFEQKTGLEVMQWLDPD 130

Query: 132 SLKILSETFLKTNGI--DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            L     +  +  G        + SR G   + + ++I+ + I  F+F RD   + +++ 
Sbjct: 131 RLIEWVRSHWQQAGGFATTFMGYVSRSGFAMVTWVVNILLLPILAFYFLRDWDKLVERVA 190

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           S+           ++R   +V+ +   G  ++ +  G++  S   L G+   + +G+I  
Sbjct: 191 SVIPRNHIGTISALARESNEVLGAFIRGQFLVMLALGVIYASGLSLVGLKLGLLIGLIAG 250

Query: 250 IMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE---LFIVDKTLRPFLVGGPI 305
           +++ IP  GA        I  L++   F+   L L G +      +    L P +VG  I
Sbjct: 251 LISFIPYLGATTGVLMAVIAALVQAQGFDLKLLILVGVVFTVGQLLESYVLTPRIVGDKI 310

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L  +   F ++ G +  G LG+ +   + A+  V+ + +    ++++
Sbjct: 311 GLHPVAVIFAVMAGGQLFGFLGMLLALPVAAVTNVLLRYAHQRYRQSE 358


>gi|94985813|ref|YP_605177.1| hypothetical protein Dgeo_1713 [Deinococcus geothermalis DSM 11300]
 gi|94556094|gb|ABF46008.1| protein of unknown function UPF0118 [Deinococcus geothermalis DSM
           11300]
          Length = 371

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/350 (12%), Positives = 117/350 (33%), Gaps = 14/350 (4%)

Query: 10  GIMRWMIMFIILVSLYF-LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
            +  ++++F +   L+  ++        A +I + + P+ +     + +       +   
Sbjct: 21  RVAVFLLLFYLAYRLFSEIRSVVVVFAVAYLIAYLANPMLNWLERGRVKR-----GLGVF 75

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LFI          +    +LV+ +         +   L+ + G + A  +      
Sbjct: 76  FVLLLFIGIFALAAALIVTVSTQLVALISGLPAQVGHLNELLNTVFGWLGAHGIPDTDSV 135

Query: 129 HPQSLKILSETF--LKTNGIDFIPRFASRFGMIFLDYCL------SIIFMIIALFFFYRD 180
             +  + +      L  N +  +    S  G I             ++ +++   +   D
Sbjct: 136 RMRLTEAVQTALQNLGRNIVPILQNLLSSTGTILSSLVSVGSVLGQVVLILLLSVYLMLD 195

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              ++  L       +     + + +V   +     G  +IA   G+ +     L GVPS
Sbjct: 196 YSRVNAALLKAFPRPWQPRVLEFTGLVGTSVGGYVRGQLVIATFIGVFVWLGLTLIGVPS 255

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
             A+G +     ++P   P+     ++ L +         + +       I    L P++
Sbjct: 256 AAAIGFLAGAFNIVPYLGPVIGATPALLLALPFGWVKMLLVIVIFVAANQIEGNFLSPYI 315

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +     L  +     ++ G   +G  G  +    +AL  ++ ++     +
Sbjct: 316 LSKTTDLHPVTVLLAILIGASLLGFAGALLSVPAVALGKLMLEKYYYPSR 365


>gi|188583917|ref|YP_001927362.1| hypothetical protein Mpop_4731 [Methylobacterium populi BJ001]
 gi|179347415|gb|ACB82827.1| protein of unknown function UPF0118 [Methylobacterium populi BJ001]
          Length = 649

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/366 (14%), Positives = 115/366 (31%), Gaps = 27/366 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R+ +     +   +++  +  +LYF +    PV  A+++ F   P   +    +   + 
Sbjct: 11  LRQALPVVTTLASLLLVVTLAGALYFGRDILVPVALAILLSFVLVPAVRALRRLRVPRAA 70

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV----------VLANQHGIPVPRWL 110
            + ++  ++        L  +      E  +L + +          + A +        L
Sbjct: 71  AVLLVVLLAFGM-----LGAVGSLIAREAAQLAADLPRYSLTLRDKITALRAATAERGGL 125

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF----------IPRFASRFGMIF 160
           SD   G +           P + K  S++ L T               + +         
Sbjct: 126 SDTFSGFFDMAEEIGKELQPPAAKTDSDSQLGTAERPMQVEIHAPRSGVLKTLGSVAGGV 185

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
           L    ++  +++   F       +  +   L                   +   F+   I
Sbjct: 186 LHPLATLGLILLFTIFILLQREDLRNRAIRLAGSSDLRRTTAAIDDATSRLSRFFIAQLI 245

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNA 278
           + +  GLV+G   W  GVPS +  GVI  I   +P    +      ++I + +      A
Sbjct: 246 LNVAFGLVIGVGLWFIGVPSPILFGVIAGISRFVPYVGAVISAVLPLAIAVAVDPGWSMA 305

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             + +   I   I    + P L G    +  +             G +GL +   L   +
Sbjct: 306 IQVAILFLIVEPIAGHVVEPLLYGHSTGISPVAVILAATLWTFLWGPIGLLLATPLTVCL 365

Query: 339 AVIWKE 344
            V+ + 
Sbjct: 366 VVLGRH 371


>gi|238916532|ref|YP_002930049.1| phosphoribosylaminoimidazole-succinocarboxamide synthase
           [Eubacterium eligens ATCC 27750]
 gi|238871892|gb|ACR71602.1| phosphoribosylaminoimidazole-succinocarboxamide synthase
           [Eubacterium eligens ATCC 27750]
          Length = 390

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/355 (15%), Positives = 117/355 (32%), Gaps = 14/355 (3%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSW-----------PIYSSFISKKEES--STFLAVIA 66
           IL S+ +L G   P +   +I F               ++     KK          ++ 
Sbjct: 34  ILDSISYLAGLVMPFIIGAVIAFVFNVPMKAIEKGLNRLFDKRCKKKHPRLIRVLAYMLT 93

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW-LSDIPGGMWASELWTK 125
            + ++ +    L  +    +  + +L+ +V  A  + I   +  LS  P         + 
Sbjct: 94  LILILAIIAGVLFVVVPELVNTIADLIGQVPTAVNNLINWLQVKLSAYPEYEEKLSSISI 153

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +     S  +   +      I+      S F     ++ +  +F +  LF   R      
Sbjct: 154 NWDSVLSNVMNFLSIGTKGIINGGIGAISGFFSGVANFFIGFVFSVYVLFQKERLTAQCK 213

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + +             ++ R+      +   G  + A   G +      +  +P  + +G
Sbjct: 214 KLMYVCMPENRADKIVEVLRLTNTTFSNFLSGQCLEACILGTMFVITLSILRMPYALLIG 273

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +I A+ A+IP         V + L++  +   A        I   I    + P +VG  +
Sbjct: 274 IIIAVTALIPIVGAFIGCIVGVILIMMTSPLKALIFVGVFLILQQIEGNLIYPHVVGSSV 333

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
            LP +     +  G    G++G+     + ++   + +  +    E KE     F
Sbjct: 334 GLPGIWVLVAVTIGGNLFGIMGMLTFIPISSVCYALLRTYVNRKVEEKEIDKGKF 388


>gi|288553488|ref|YP_003425423.1| putative autoinducer -2 export protein AI-2E [Bacillus pseudofirmus
           OF4]
 gi|288544648|gb|ADC48531.1| putative autoinducer -2 export protein AI-2E [Bacillus pseudofirmus
           OF4]
          Length = 362

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/311 (14%), Positives = 109/311 (35%), Gaps = 13/311 (4%)

Query: 14  WMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           ++I+++  +  +  K         FAP++ A ++ +   P  +    K     +   +I 
Sbjct: 18  FLIIYLGSLVDWIFKPIVVLVQTLFAPIVLAGVLFYLLRPFVNLLSKKMP--RSISILIL 75

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +  + L    +L +      +   L             +   +  I    + S      
Sbjct: 76  YLIAIGLITSLILLVGPELQRQFTSLTRNWPTFMNE---IRNMIIAIQENEYISRFQESE 132

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
               + +    E ++ TN +  I    + F     +  + +I +   L++  ++G     
Sbjct: 133 NFSLEEITSNLEEYM-TNIMSSIGSNVASFIGFIANVVIVLIIIPFVLYYMLKEGEKAPN 191

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           Q+  L         ++I   +   + S   G  I++I  G+++   Y + G+   + L +
Sbjct: 192 QVLRLLPRKHQKEGQRILSDMDYALSSYIQGQIIVSICVGVLVYIGYLIIGIEYPLVLAL 251

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +     +IP   P   T   + +    + F A  + +   +   I    + P ++G  + 
Sbjct: 252 VAMFTNVIPFVGPWIGTFPGVIVGFLDSPFMALLVIIVVVVVQQIESNLISPQVMGRKLD 311

Query: 307 LPFLPTFFGLV 317
           +  L     L+
Sbjct: 312 IHPLTIILLLL 322


>gi|293365275|ref|ZP_06611992.1| membrane protein [Streptococcus oralis ATCC 35037]
 gi|307703816|ref|ZP_07640757.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
 gi|291316725|gb|EFE57161.1| membrane protein [Streptococcus oralis ATCC 35037]
 gi|307622651|gb|EFO01647.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
          Length = 369

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/338 (13%), Positives = 114/338 (33%), Gaps = 8/338 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            II   +  +     P L      + + P+ +    + + +     ++   +++   +V 
Sbjct: 29  AIITPFVTVVNTIMIPFLLGGFFYYITNPVVTFLEKRCKINRLIGVLVTLCALIGAIVVG 88

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +++L    + ++  L   ++ +      +   + D+        +  +      +L  + 
Sbjct: 89  VVYLLPILINQLTSL---IISSQNIYSRLQDLIIDLSMNPVFQNIDIQQTIQQLNLSYVD 145

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              +  N ++ +               L +I   + L +F  DG  +   L+        
Sbjct: 146 ---ILQNILNSVSNSLGSVLSALFSTVLILIMTPVFLIYFLLDGHKLLPMLERTILKHDK 202

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-G 256
                +   +   I     G+ I A+  G +    Y + G+   +   + + I  +IP  
Sbjct: 203 LNLSSLLTNLNTTIARYISGIAIDAVIIGCLAYIGYSVIGLKYALVFAIFSGIANLIPYV 262

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           G  I    + I  +   +         +  I   I    L P +VGG +K+  +     L
Sbjct: 263 GPSIGLIPMVIANVFT-DPHRMLIAVAYMLIIQQIDGNVLYPRIVGGVMKVHPITILVLL 321

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           +      G++G+ +     ++   I K      + +KE
Sbjct: 322 LLSSNIYGVIGMVVAVPTYSIFKEITKFLAKLYENHKE 359


>gi|148261519|ref|YP_001235646.1| hypothetical protein Acry_2536 [Acidiphilium cryptum JF-5]
 gi|326405006|ref|YP_004285088.1| hypothetical protein ACMV_28590 [Acidiphilium multivorum AIU301]
 gi|146403200|gb|ABQ31727.1| protein of unknown function UPF0118 [Acidiphilium cryptum JF-5]
 gi|325051868|dbj|BAJ82206.1| hypothetical protein ACMV_28590 [Acidiphilium multivorum AIU301]
          Length = 364

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/325 (16%), Positives = 122/325 (37%), Gaps = 7/325 (2%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P ++A  I +   P  S+   +     +  A+I  ++++    +  L L+     ++ 
Sbjct: 35  LLPFVAAAGIAYFLDPAVSAL-HRLGLPRSLGAIIMLLAMIAGVGLCALLLYPLISAQIS 93

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L  ++       I   +  +     +  +   +  +S+     + +E     N      
Sbjct: 94  LLAQQL----PGMIAGLQKFTAHQISLIQARFGSGFVSNKLQSLVSNEAGAIVNFAGSAA 149

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
           R     G    +    ++   I  F+F RD   +  +LDS     + +  + ++R + ++
Sbjct: 150 RQVLGTGFALFNILTLLVITPIVAFYFLRDWPLVMGRLDSWLPRSYESVIRNLAREISRI 209

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + +   G  I  +  G+   +   LAG+   + +G+   +++ IP    I     SI L 
Sbjct: 210 LNAWLRGQAICCLFLGVFYAATLTLAGLNLGLVVGLTAGLLSFIPYVGTIVGAVSSIVLA 269

Query: 271 IKGNIFNATCLFLWGAIELFIV--DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           +         L + G   +  +  D  + P  +G  + L  +   F L  G  T G LG+
Sbjct: 270 LGQFGGLDHVLVVGGIFVIGQLLNDYVVAPRFLGDRLGLSSVWVIFALFAGAETFGFLGV 329

Query: 329 FIGPVLMALIAVIWKESIMAIKENK 353
            +   + A + V+ +  +    ++ 
Sbjct: 330 LLAVPVTATLGVLARFWLRHYLQSP 354


>gi|126650494|ref|ZP_01722717.1| hypothetical protein BB14905_07888 [Bacillus sp. B14905]
 gi|126592650|gb|EAZ86649.1| hypothetical protein BB14905_07888 [Bacillus sp. B14905]
          Length = 322

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 56/311 (18%), Positives = 108/311 (34%), Gaps = 2/311 (0%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            P++ A I  F   PI   F  + + S         +  + +  +         M ++  
Sbjct: 1   MPLILAAISAFFLEPIVMFFKRRWKMSRKIAVAFIYIVSVIIISIICYISITQIMTQIIL 60

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L  +          +   + +               S  ++     +   +T    F   
Sbjct: 61  LSKQAPYYISKLSDMWLHMQENISKYTEDFPPEVSTSLQKTTMDFIKKIEETFLSFFNYS 120

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
             S F        +S++  +IALF F  D   + +      +       K I   +    
Sbjct: 121 KVSAFFSEIPSLFISLLVYMIALFLFMLDLPKLKRITYKYLKPNTAKKIKIILNRLKDAT 180

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLL 270
                    ++   G V      L      + + +I  ++ ++P  G+ I      +Y L
Sbjct: 181 FGYMKAHLFVSFIIGGVTLIGLLLIQPKYAITMTIIIWLIDIVPFLGSIIILAPWGLYHL 240

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           + GN   A  LF+  AI L I+ + + P L+G  I L  LPT   +  G++  G++GL +
Sbjct: 241 LMGNTAIAVKLFILAAILL-IIRRVVEPKLMGEHIGLSTLPTLIAMFIGLQLFGIIGLLV 299

Query: 331 GPVLMALIAVI 341
           GP ++     +
Sbjct: 300 GPFVIIFFIAL 310


>gi|306825359|ref|ZP_07458699.1| membrane protein [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432297|gb|EFM35273.1| membrane protein [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 371

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 113/337 (33%), Gaps = 6/337 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            II   +  +     P L      + + PI +    + + +     ++   +++   +V 
Sbjct: 31  AIITPFVTVVNTIMIPFLLGGFFYYITNPIVTFLEKRCKINRLIGVLVTLCALIGAIVVG 90

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +++L    + ++  L   ++ +      +   + D+        +  +      +L  + 
Sbjct: 91  VVYLLPILINQLTSL---IISSQNIYSRLQDLIIDLSMNPVFQNIDIQQTIQQLNLSYVD 147

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              +  N ++ +               L +I   + L +F  DG  +   L+        
Sbjct: 148 ---ILQNILNSVSNSLGSVLSALFSTVLILIMTPVFLIYFLLDGRKLLPMLERTVLKHDK 204

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   +   I     G+ I A+  G +    Y + G+   +   + + I  +IP  
Sbjct: 205 LNLSSLLTNLNATIARYISGIAIDAVIIGCLAYIGYSVIGLKYALVFAIFSGIANLIPYV 264

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P       +   +  +         +  I   I    L P +VGG +K+  +     L+
Sbjct: 265 GPSIGLIPMVIANVFTDPHRMLIAVAYMLIIQQIDGNVLYPRIVGGVMKVHPITILVLLL 324

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                 G++G+ +     +++  I K      + +KE
Sbjct: 325 LSSNIYGVIGMIVAVPTYSILKEITKFLAKLYENHKE 361


>gi|302871869|ref|YP_003840505.1| hypothetical protein COB47_1227 [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302574728|gb|ADL42519.1| protein of unknown function UPF0118 [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 351

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 57/359 (15%), Positives = 120/359 (33%), Gaps = 16/359 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLK------GFFAPVLSALIIGFTSWPIYSSFISK 54
           M    L  +     + + +I + +YF            P L AL   +   P      +K
Sbjct: 1   MHIIKLVKRYFTDILFIALIAIVIYFFANMKAFWPILIPFLIALFFSYLLKPCVDFLETK 60

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
                     I+ +    +     + +F Y +      VS+     Q+       +    
Sbjct: 61  IRSRD-----ISILISFAIIFGITVMVFVYFI---PLFVSETKQLIQNVPEYIALIQKW- 111

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                S+L  K     + +   +   ++      +  F            L  + + I  
Sbjct: 112 FYEIDSKLLNKLNIDIKEILNANSINIEAVSKQTLSIFL-NIVKSISSNILYYLLIPIIS 170

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           F+  RD   +   +  L    +      I   + +V+     G  + A+  GL+    + 
Sbjct: 171 FYILRDWKRLVMWIKWLLPEKYRKEGLYIFADINRVLHQYIRGQLLDAVIVGLLSFFGFS 230

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           L  V     LGVIT I  +IP   PI  +   + + +  +   A  + ++  +   +   
Sbjct: 231 LLSVRYAALLGVITGIGNLIPYFGPIFSSIPGVIIALSDSYIKAILVIVFLVLLQQVDSF 290

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            + P ++G  + L  L     ++   +  G + +F    + A+I +I+   +  IK  +
Sbjct: 291 IISPRVIGSKVGLHPLTIIIVIILANKIFGFVAMFFAIPIAAVIKIIFINIMKRIKPEE 349


>gi|111221300|ref|YP_712094.1| hypothetical protein FRAAL1860 [Frankia alni ACN14a]
 gi|111148832|emb|CAJ60510.1| hypothetical protein; putative membrane protein; putative IMP
           dehydrogenase / GMP reductase domain [Frankia alni
           ACN14a]
          Length = 408

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 112/331 (33%), Gaps = 14/331 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+    ++I+L+++  ++    P+++ L+I     P+   F                V
Sbjct: 75  RLIIIGAAVYILLMAIGRVRVVVIPIIAGLLIAALIHPLAHRFQRLGLPRLGAAFAALFV 134

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               L     + + +    E+  +  +V    +    +  +L++ P  +  S++      
Sbjct: 135 FFAVLAGA-AVAVGFNAANEIPTVSDQVSEGVE---QIRGYLTNGPFHLSQSQIDDLVDD 190

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             ++L          N    +         +  +    ++  + + FFF  DG  I   +
Sbjct: 191 IRRNL---------ANNRGRLVSGVISGASVAAEVITGLLVALFSTFFFLYDGDRIWDWI 241

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +          +   R     I     G   +A  +   +       GVP    L ++T
Sbjct: 242 VTRFPAGAEDRVRGAGREAWLTITGYIRGTVFVAAVDAFGIAMGLVGVGVPLVAPLALLT 301

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
                +P  GA ++  A  +  L+ G + +A  +         I    L+P ++   ++L
Sbjct: 302 FFGGFVPIIGATVAGVAAVLVTLVSGGVTDALIILAVVLAVQQIEGHLLQPLVMRRAVRL 361

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             L     L  G    G+ G       +A++
Sbjct: 362 HPLAIVIALSAGGVLAGIPGAIAAVPFVAVV 392


>gi|225389457|ref|ZP_03759181.1| hypothetical protein CLOSTASPAR_03205 [Clostridium asparagiforme
           DSM 15981]
 gi|225044483|gb|EEG54729.1| hypothetical protein CLOSTASPAR_03205 [Clostridium asparagiforme
           DSM 15981]
          Length = 379

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 61/342 (17%), Positives = 119/342 (34%), Gaps = 8/342 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKG----FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + ++  +I F+  V L FL      FF P +   II   + P       + +      ++
Sbjct: 14  RLVLNILIPFMGWVFLCFLGPKLLRFFMPFVIGWIIALIANPPVRFLERRLKLVRKHSSI 73

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASEL- 122
           +  V V+ + I  L  LF      +  L   +  L       V   + +I          
Sbjct: 74  LIVVLVLAMVIGLLYLLFSRTAAGISALFKTLPQLYTALEADVKTNMEEISHLFQFFPPG 133

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             +  +   +    + + L           A           +  +  I++ +FF  D  
Sbjct: 134 VQQAWNQLTANIGDALSMLVQKAAPPTMEAAGTVAKSIPGALVYSVVTILSSYFFIVDRD 193

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I      L       Y++ ++  V  ++   FL    I     L+L + +++ GV    
Sbjct: 194 RIIAFWKQLLPEWCTRYYRYLTGEVKHLVGGYFLAQFKIMFVVWLILMAGFFVLGVSYAP 253

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L  + A +  +P  G   +     +  L+ G    A  L L   +   ++ + ++P LV
Sbjct: 254 VLSFLIAFLDFLPVFGTGTALLPWGVVKLLAGEYAFAAGLLLLYVLTQ-VIRQLVQPKLV 312

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           G  + L  L T   L  G +  GL G+ +   +      ++K
Sbjct: 313 GDSMGLNPLFTLILLFLGFKISGLAGMILAVPIGLFFMNLYK 354


>gi|24380070|ref|NP_722025.1| putative permease [Streptococcus mutans UA159]
 gi|290579951|ref|YP_003484343.1| putative permease [Streptococcus mutans NN2025]
 gi|24378063|gb|AAN59331.1|AE014998_8 putative permease [Streptococcus mutans UA159]
 gi|2952526|gb|AAC05771.1| putative permease [Streptococcus mutans]
 gi|254996850|dbj|BAH87451.1| putative permease [Streptococcus mutans NN2025]
          Length = 364

 Score = 81.8 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 57/318 (17%), Positives = 114/318 (35%), Gaps = 10/318 (3%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           K FF P L    + + + PI +   ++ +    +        +  +F V L  L +    
Sbjct: 39  KTFFLPFLLGGFLYYITNPIVTFLENRFKIKRIW-------GITLIFAVLLSLLVFSITS 91

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF--LKTNG 145
            +  L++++         +   L D+    W S    K++  P  LK  + ++  + TN 
Sbjct: 92  LIPNLINQLTDLISASQNIYVGLQDL-FNEWKSNPAFKNIDIPVLLKQFNLSYVDILTNV 150

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +D +    S    +  +  + ++   + LF+  +D   +   LD            ++  
Sbjct: 151 LDSVTVSVSSIVYMITNTVMILVLTPVILFYLLKDKDGLMPMLDRTILKNDRHNISQLLN 210

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K I     G+ I A    +     Y + GV       ++  I  +IP   P      
Sbjct: 211 QMNKTISRYISGVAIDAAFIFVFALIGYQIMGVQYAFLFALVAGITNVIPYVGPYLGLTP 270

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            +   +  +        ++      I    + P +VG  +K+  L     LV G    GL
Sbjct: 271 VVLAYVVSDPKKMIIAIIYIMTLQQIDGNIVYPRVVGSTMKIHPLTIMVLLVLGGNIAGL 330

Query: 326 LGLFIGPVLMALIAVIWK 343
           +G+ +     A+I  I K
Sbjct: 331 VGMLVAVPAYAIIKEIVK 348


>gi|329116864|ref|ZP_08245581.1| putative membrane protein [Streptococcus parauberis NCFD 2020]
 gi|326907269|gb|EGE54183.1| putative membrane protein [Streptococcus parauberis NCFD 2020]
          Length = 374

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/333 (12%), Positives = 119/333 (35%), Gaps = 6/333 (1%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
             F      A ++       Y + + +  +   + ++   +S++  ++     L +   +
Sbjct: 40  LPFLYGAALAYVVNIVMS-TYETGLGRLIKGEKYASLKRAISMILAYLTFFTLLTWIISI 98

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            + +L++ + L  Q      + +              K+      +      +       
Sbjct: 99  VIPDLIASLSLMLQFDTASIKTVVHDLSHNQLIAKAIKYAGGVSEITKTISNYSHQLLQQ 158

Query: 148 FIPRFASRFGMIFL--DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK--- 202
            +  F +    + +     +S+    +   +   +   + +Q + L +     Y ++   
Sbjct: 159 LLSVFTNILTSVTMIASAVISLFVSFVFSLYVLANKEQLCRQGNLLVDTYTGIYAQRIHY 218

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
              ++       F+G +I AI  G +     ++  +P    +GV+ A  A+IP       
Sbjct: 219 FVGLLHSRFHGFFVGQSIEAIILGSLTALGMFILQIPFAATIGVLVAFTALIPVVGAYIG 278

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             +   L++  ++  A    ++  +        + P +VGG IKLP +     +  G   
Sbjct: 279 LVIGFILIMTQSMTQAIIFVVFLVVLQQFEGNLIYPRVVGGSIKLPGMWVLLAITIGASL 338

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            G++G+ +   L A    + ++++   +  ++K
Sbjct: 339 KGIIGMVVAVPLAATFYQMIRDNVEKKQAIQKK 371


>gi|256377888|ref|YP_003101548.1| hypothetical protein Amir_3823 [Actinosynnema mirum DSM 43827]
 gi|255922191|gb|ACU37702.1| protein of unknown function UPF0118 [Actinosynnema mirum DSM 43827]
          Length = 390

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/316 (16%), Positives = 103/316 (32%), Gaps = 17/316 (5%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           ++ +++  L+ +     PVL  L+I    WP      +K        A I  +  + +  
Sbjct: 38  LLGLLIGKLWVV---VMPVLLGLLITTVLWPPARWLRAK-GLPPALAASIVLLLGLGVLG 93

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +  +         ++      A +      +W+S  P                  L  
Sbjct: 94  GMIALISSSIASGADDIAD---SATEALGQARQWVSGPP--------LNLGDGQFDGLIQ 142

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                L+ +         +  G +     ++ +  ++  FFF +DG      L +L    
Sbjct: 143 KGVQQLQASIGSIANSLLTGVGTVT-SGVVTGLVALLLAFFFVKDGPRFIPWLRALVGER 201

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
              +   +   V   +        I+++ + +++G      GVP  V L  +T +   IP
Sbjct: 202 AGGHLAIVLDRVWGTLGDFIRTQAIVSLFDAVLIGLGLVFLGVPLAVPLAALTFLGGFIP 261

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             GA I+     +  L+      A  + +       I    L+P L    +KL       
Sbjct: 262 IVGAFIAGAMAVLVALVSNGFTAAVIMLVVVVAVQQIEGNVLQPILQSRSLKLHAAVVLL 321

Query: 315 GLVGGVRTMGLLGLFI 330
            +  G    G+ G F+
Sbjct: 322 AVTAGSSLYGIAGAFL 337


>gi|297544522|ref|YP_003676824.1| protein of unknown function UPF0118 [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842297|gb|ADH60813.1| protein of unknown function UPF0118 [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 341

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/349 (14%), Positives = 128/349 (36%), Gaps = 20/349 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFF----------APVLSALIIGFTSWPIYSSFISKKEESS 59
            + +  + F+I+ ++  L  F           +P   A ++ +   P    F + K  S+
Sbjct: 2   QVKKIYLFFLIIAAIGLLYFFIKNWVSIKNILSPFFIAGLVAYLLNP-MVKFFNSKGLST 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
            F  ++  + V    ++   ++F   + EM   ++ +    +        L +I   +  
Sbjct: 61  FFSILLVFLIVTLGILIFSFYIFPLMINEMIAFITMIPFYIEE-------LQNILIQLKF 113

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           +          + L     T             A +  +  L   +  I + I  F+F +
Sbjct: 114 NYFSYLPPQFEKVLDKNLNTLNNLFASR--VDMAFKSTVAILKNVIDAILVPIITFYFLK 171

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D     ++++ +    + + +  + R + K++         ++I  G++      L  + 
Sbjct: 172 DKNLFKKEIEKIIPSKYHSSFFTLLRKIDKILSKYIRAQIYLSIFVGILTSIGLSLIKIK 231

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               +G++T ++ +IP   PI     ++ L    ++       +   +   I +  + P 
Sbjct: 232 YAFLVGLLTGVLNIIPYIGPILSIIPAVLLGFLDSLSKGIWALVVCLLVQQIENAFITPK 291

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           ++   + L  +   F L+ G    G+ GL +   ++A++  +  E  + 
Sbjct: 292 ILSDSVGLHPITVIFSLIAGGELFGIWGLLLSVPIVAIVKAVVTEIFIE 340


>gi|311069610|ref|YP_003974533.1| putative integral inner membrane protein [Bacillus atrophaeus 1942]
 gi|310870127|gb|ADP33602.1| putative integral inner membrane protein [Bacillus atrophaeus 1942]
          Length = 388

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/333 (15%), Positives = 116/333 (34%), Gaps = 5/333 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           FI    +  LK    P++   I+ +   PI      +K +    + ++  + +  + I  
Sbjct: 42  FIFTPIIVLLKTISLPIILTGIVFYLLNPIVDFLERRKVKRIYSILLLYILIIGLITITI 101

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +  + +    ++  L+  +         V    + + G  + ++       +   L    
Sbjct: 102 VSIIPF-LKEQIMSLIDNLPRYVDI---VEDQTAQLIGSDFVNQAQQTMNINISDLANKV 157

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
                T          +  G I  +  +SII +   LF+  +DG  +   +         
Sbjct: 158 SDQAATIVNSTFTGVGNFIGAIT-EIVISIITVPFILFYLLKDGKKLPVYILKFVPTRLK 216

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   +   + S   G  I++   G +L   Y + G+     L +I A  +++P  
Sbjct: 217 EQTFTVLSEMNHRLSSYIRGQIIVSFCIGFLLFIGYLIIGLDYASLLAIIAACTSIVPYL 276

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P      +I + +  +      L +   I   I  K + P ++G  + +  +   F L+
Sbjct: 277 GPTIAITPAIIIALVTSPLMLLKLVIVWTIVQLIEGKLISPQIMGKNLHIHPITIIFVLL 336

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
              +  G++G+ +     A++ VI        K
Sbjct: 337 TAGKLFGVVGIILAIPGYAVVKVITTHLFDWFK 369


>gi|291441522|ref|ZP_06580912.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
 gi|291344417|gb|EFE71373.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
          Length = 371

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/349 (15%), Positives = 119/349 (34%), Gaps = 17/349 (4%)

Query: 14  WMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +++ +  V L+    +     P++ AL++   +WP+ + F+ ++  +    A + TV  
Sbjct: 25  LLVLVMAAVVLWVVGWMWPVVWPLVVALLLTTLTWPL-ARFLRRRGVAPALAASVVTVLF 83

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +    +  +      +  EL   VV   +                WA+          
Sbjct: 84  LLVAAGTVALIAVPVASQSGELADGVVEGIRRL------------REWAAGPPLNIDDDQ 131

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +    + T    +    I   A           ++ +  +  +FFF +DG      L  
Sbjct: 132 IAHAFDAATARIQDSAGSIANTAVTGVSTVFSGVVTAVLALFLMFFFLKDGPRFLPWLGR 191

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                       ++      + +      ++ + + + +G   WL  VP  + L V+T +
Sbjct: 192 QLPGRLATDIPTVAARCWDSLGAFVRSQALVGLLDAVGVGLGLWLLDVPLVLPLAVLTFV 251

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            A +P  GA  +     +  L+   + NA  +     +   +     +P +    + L  
Sbjct: 252 AAFVPIVGALFAGFVAVLIALVSNGLTNALLVLAVIIVVQQLEGNVFQPIIQSRGLGLHA 311

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                 +  G    G+ G F+   +  LIAVIW      + +  +   +
Sbjct: 312 AVVLLAVTLGGSLAGIAGSFLAVPVAGLIAVIWNYVREQLSDPPQDPGA 360


>gi|152964487|ref|YP_001360271.1| hypothetical protein Krad_0518 [Kineococcus radiotolerans SRS30216]
 gi|151359004|gb|ABS02007.1| protein of unknown function UPF0118 [Kineococcus radiotolerans
           SRS30216]
          Length = 397

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/347 (12%), Positives = 110/347 (31%), Gaps = 33/347 (9%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLS---ALIIGFTSWPIYSSFISKK--EESSTFL--- 62
           +    ++    + LY +      +     A       +P+      +    +  +     
Sbjct: 32  LTAIGLLLATALVLYIVLQTLQVLTWIVVAAFFAIALYPVVGWVERRLLGGKRRSLATLL 91

Query: 63  ----AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                V+    +  LF+VPL         ++ +L+                    P G  
Sbjct: 92  VFVVIVLVLAGIGTLFVVPLAQEGTKFAGQLPQLIDDARAG------------RGPVGNL 139

Query: 119 ASELWT-KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                   ++   Q       T L T     +   A+        + L+ + ++      
Sbjct: 140 LERTGALTYVQDNQDRIRSFATGLTTPAAGVLSGVATSAAGAASIFVLAFLMVL------ 193

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             +G  +     +L         + +     K +     G  +I+   G++  +   +AG
Sbjct: 194 --EGPKVVDGFVNLFHAPTAHRLRSVGADCAKSVTGYLSGNLLISAICGVLTYAVLKIAG 251

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           VP    + +  AI  +IP         V++   +  ++     + ++  +   + +  L+
Sbjct: 252 VPFAGLIALFVAIADLIPLVGATIGAVVAVVAGLVHSVPAGIAVLVFFLVYQQLENHLLQ 311

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           P +    +KL  L     ++  V   G+LG  +   + ++  V+ ++
Sbjct: 312 PLIFSRTVKLNPLTVIVAILLSVELAGILGALLAIPVASIAQVVVRD 358


>gi|332035801|gb|EGI72286.1| putative permease PerM [Pseudoalteromonas haloplanktis ANT/505]
          Length = 358

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 121/355 (34%), Gaps = 14/355 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P       ++   +  LYF      PVL AL+I +   WP+    + +         +I
Sbjct: 15  DPHSSTLLFLLLASVALLYFFGSLIVPVLVALVIAYLLDWPVVH--LERVGLKRFSATII 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + + +  +L +      +   LV +     + G      L +    + + E    
Sbjct: 73  VMLIFISIMLTLILVIGPVLWKQTSNLVQETPHMLEQGKSYLIALPEQYPSLISIEQVQA 132

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            ++  ++  I             +  F+       + + + ++ + + +FF  +D   ++
Sbjct: 133 IVATVEAKIIEF--------GQAVLSFSLTSLKDVVAWLIYLVLVPLLVFFMLKDKLELT 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +  L          ++   + + I +   G     +  G V   A+ +  +     LG
Sbjct: 185 GSIAKLIPQQRRLIL-QVWHEMNQQIMNYIRGKVFEILIVGGVSFIAFTVLDLRYAALLG 243

Query: 246 VITAIMAMIPG-GAPISFTA-VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V+  +  +IP  GA +      ++ L   G       + +   I   +    L P L   
Sbjct: 244 VLVGLSVLIPFIGAALVTIPVAAVALFQFGLETQFLDILIIYGIIQALDGNVLVPLLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            + L  +     ++      G  G+F    L +L+  +        +E  +++S 
Sbjct: 304 AVDLNPVFIIVAVLFFGGLWGFWGVFFAIPLASLVKALITAWSSTHEEISKELSE 358


>gi|310659285|ref|YP_003937006.1| hypothetical protein CLOST_1981 [Clostridium sticklandii DSM 519]
 gi|308826063|emb|CBH22101.1| conserved membrane protein of unknown function [Clostridium
           sticklandii]
          Length = 389

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/353 (15%), Positives = 124/353 (35%), Gaps = 14/353 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST---------FLAVIA 66
           ++ +I   +  L  F   +  A I+      I      + E+S+          ++  I+
Sbjct: 31  VLSVIGYVVSLLTPFIVGLCIAFILNVIMRLIEDFLKKRLEQSTNTKNPSKIEKWIRPIS 90

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-----WLSDIPGGMWASE 121
            +  + L +  +  L +  + E K  V  V       +   +      L+ +P  + +  
Sbjct: 91  LLLSLSLVVAMVWILLFLIVPEFKNTVEIVSKEFPDFMKKIQNWLGGILASLPFEINSIA 150

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
               +            +   +   +      S      L++ L ++F I  L       
Sbjct: 151 FSDLNWEKIGQWISQFLSRGSSALFNTTIGITSSIFSALLNFVLGLVFAIYVLLQKETLS 210

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               + L +            I+++   +  S   G  + A+  G++      +  +P  
Sbjct: 211 KQFKKLLYAYLPENIVIEILDIAKLSNGIFSSFVTGQFLEAVIIGVLCFIGMLILRLPYA 270

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           + +  +    A+IP       T V ++L++  +   A    ++  +   +    + P +V
Sbjct: 271 LVVSALVGFTALIPVFGAFIGTIVGVFLILMVSPIKALWFVIFFLVLQQLEGNLIYPKVV 330

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           GG I LP +     +  G    G+LG+ +G  L +++  + ++S+      KE
Sbjct: 331 GGSIGLPSIWVLVAVTLGGSAYGVLGMLLGVPLSSVLYSLLRKSVHKRLAKKE 383


>gi|297626877|ref|YP_003688640.1| Hypothetical membrane protein [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922642|emb|CBL57219.1| Hypothetical membrane protein [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 476

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 93/271 (34%), Gaps = 10/271 (3%)

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            ++    L   G     +       A +       WL   P  +              + 
Sbjct: 127 VVIIGGLLTLVGAQIGTQWRQLGEQAGKGVQAFITWLGTGPLHISQ--------DQMNNW 178

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
              + T L+T     I   A+  G     +   +   + A FFF ++G   ++ +     
Sbjct: 179 LSQARTHLETQQNQ-IVSVATAAGSGVGKFFAGLAMALFATFFFLKNGGHYARSIIGTLP 237

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  +   +     + +      ++A  +G+  G    + G    +A+  +T + A 
Sbjct: 238 RANRIAAQGPLKSGWHALVNYVRAAVVVAAVDGVGAGVGALILGSNLWMAIMALTFVCAF 297

Query: 254 IPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +P    +   AV++ + L+    + A  +       L +    L+P L+G  +++P L  
Sbjct: 298 VPLIGALFSGAVAVAVTLVTLGFWKAVIMLAVFVAVLQLEAHILQPLLLGRAVQIPPLVV 357

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             G+  G+   G++G      ++A    I +
Sbjct: 358 LVGIAVGMTLSGVVGGIFAIPIVAFATGIIR 388


>gi|225017521|ref|ZP_03706713.1| hypothetical protein CLOSTMETH_01448 [Clostridium methylpentosum
           DSM 5476]
 gi|224949671|gb|EEG30880.1| hypothetical protein CLOSTMETH_01448 [Clostridium methylpentosum
           DSM 5476]
          Length = 409

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/343 (14%), Positives = 109/343 (31%), Gaps = 15/343 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEES--------------STFLAVIATVSVMCLFIV 76
             P +    + +   P+   F     E                    +   V  +  F V
Sbjct: 46  MMPFMIGFALAYLLNPVMKFFERNLFERAFRNSRLKKKRKLVRGLSVLTTVVVALAAFTV 105

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            LL L       +  +++ +    ++ G  V   ++         +     ++      I
Sbjct: 106 VLLLLIPQLAYSLMGILNNLPEYMKNLGNYVEGLVAGNQELANFVDTQMTTINDTIQDFI 165

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +     T  +  +            D  L II  +  L+   +      + + +L    
Sbjct: 166 ATAMPSITKLLGNVTVGVIGVVNALKDSILGIIISVYVLYAKEQFIAQAKKVIVALTPDS 225

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   +  + R    V      G  I ++  G++      + G+P  V + VI  +  +IP
Sbjct: 226 FSKPFISLVRETHGVFGGFISGKIIDSLIIGVLCFIGTSILGMPYAVLVSVIVGVFNVIP 285

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P      S  L++  +        ++  +        L P+++GG   L      F 
Sbjct: 286 FFGPFIGAIPSALLILMVDPLKCLWFVIFIIVLQQFDGNILGPYILGGTTGLSAFWVIFA 345

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           ++      G +G+F+G  + A+I  +    I    E K + ++
Sbjct: 346 ILTFGGLFGFIGMFVGVPVFAVIYTLISRGINKKLEKKGRSTA 388


>gi|313681012|ref|YP_004058751.1| hypothetical protein Ocepr_2128 [Oceanithermus profundus DSM 14977]
 gi|313153727|gb|ADR37578.1| protein of unknown function UPF0118 [Oceanithermus profundus DSM
           14977]
          Length = 366

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/333 (12%), Positives = 106/333 (31%), Gaps = 14/333 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           +   L A  + + + P+ S    ++            + V  LF V L          + 
Sbjct: 37  WVGFLIAYTLAYLADPLVSGLERRRVRR-----AFGVLLVYALFFVFLGLASVLLAEVVV 91

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI- 149
           +L        +   P+  W+  +P  +       +  +         +  L+      + 
Sbjct: 92  QLSQLSERIPEVLRPINGWIEGLPALVRRWAETPEVQAVLVHTADALKALLQGFSATLVK 151

Query: 150 --------PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                                  + ++ + +   +   D   ++  L       +     
Sbjct: 152 GLGALLGQGGNLVAGLAALAGGLVQLLAVFVVTGYLMVDFPRVNAALLEALPRPWQPLAV 211

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +++  + + +     G  ++A   GL +G    L GVP   ALG I  +  ++P    + 
Sbjct: 212 ELAGRLDRAVGGYIRGQLLVAALVGLAVGLGLALIGVPMAAALGFIAGVFNLVPYLGVVV 271

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               ++ L +    +    + +   I   +      P+++G    L  +     ++ G  
Sbjct: 272 SIVPALLLALTVAAWKVVGVLVVFLIANQLESHLFSPYILGRATALHPITVVLSILAGAG 331

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             GL G  +    +A   V++ +  +  + +++
Sbjct: 332 LFGLWGAMLAVPTVAFAKVLYTDYYLPSRCHEQ 364


>gi|115375072|ref|ZP_01462341.1| hypothetical integral membrane protein in upfo118 [Stigmatella
           aurantiaca DW4/3-1]
 gi|310825428|ref|YP_003957786.1| hypothetical protein STAUR_8204 [Stigmatella aurantiaca DW4/3-1]
 gi|115367910|gb|EAU66876.1| hypothetical integral membrane protein in upfo118 [Stigmatella
           aurantiaca DW4/3-1]
 gi|309398500|gb|ADO75959.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 375

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/304 (12%), Positives = 103/304 (33%), Gaps = 9/304 (2%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
            + +K         +  +S + L     + L    M + + L++++         +   +
Sbjct: 75  LLERKGLRRGLAIAVVMISGLALVGGLGMLLIPAAMTQGEALLTQL-------PTLMEEV 127

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
                    SE +   +    ++           G   +       G   +     ++ +
Sbjct: 128 RSFRLFRMLSEHFGALMQFGGTVAATGAAPSPPTGTLSLTPLLEAIG-GAVSMMGGVVTI 186

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
              + F    G  + + L           ++++   V +       G+++I      +  
Sbjct: 187 FFLVVFMLAFGKGMPRWLMEQLPAAHRQRYERVMLKVYQATGGYLSGLSLICTINATLTT 246

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIEL 289
           +   + G+P  + LG+++   +M+P   P+        L  + G  F    + ++  I  
Sbjct: 247 TVLAVLGLPFFLPLGIVSGFSSMVPYAGPVVAGGFITLLTWVTGGWFKGMVVLVYFLIYG 306

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            +    L P +    + +  L T   ++  V   G++G  +   ++A + +I +E +   
Sbjct: 307 QLEGNVLAPLVFRRTVHVNPLLTLLAVLFCVELAGIIGAMVAVPVVATVQIIVRELLQLR 366

Query: 350 KENK 353
           +E  
Sbjct: 367 QERN 370


>gi|302874704|ref|YP_003843337.1| hypothetical protein Clocel_1829 [Clostridium cellulovorans 743B]
 gi|307690683|ref|ZP_07633129.1| hypothetical protein Ccel74_21186 [Clostridium cellulovorans 743B]
 gi|302577561|gb|ADL51573.1| protein of unknown function UPF0118 [Clostridium cellulovorans
           743B]
          Length = 342

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/331 (12%), Positives = 118/331 (35%), Gaps = 13/331 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +   I+L    F +        A I+ +   PI+ S  S+  +     A +  ++    
Sbjct: 19  TIFTIILLFYFKFTRDVIFVFFMAFILSYFLKPIHLSI-SRNGKYKRLCAGVLVLTFFSA 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            I  ++FL    + E   +V  + +  ++   +   +  + G      +         ++
Sbjct: 78  IIFVIMFLLPLIVRESNNIVGTLAVMEKYIQQINSKMESMRGNKLVQSVII-------NI 130

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
              SE ++KT G   +        +      L    + I +++   D   I ++L  +  
Sbjct: 131 SSNSENYIKTQGEKIV-----NLLIKLGHSSLEYSIVPIVVYYILADSELIFKRLTMMIS 185

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
             +   +K+I   + +++    +   I+     ++      +  +     L +I     +
Sbjct: 186 PNYRKVYKEIFSDIDRILSKYIICQFILCSIIAILTFIVLAIFHIKYPFLLALINGFFNI 245

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   PI     +I +    +      + ++  +   I    + P + G  + L  +   
Sbjct: 246 IPYFGPIIGAIPAILVAALQSHNKVIYVAIFLYLIQQIEGDLISPKITGEFVDLHPMVVL 305

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             ++ G +  G +G+ +      ++ +++++
Sbjct: 306 LLIIIGGKVGGFIGMVLAVPAGVILKILYED 336


>gi|159043294|ref|YP_001532088.1| hypothetical protein Dshi_0742 [Dinoroseobacter shibae DFL 12]
 gi|157911054|gb|ABV92487.1| protein of unknown function UPF0118 [Dinoroseobacter shibae DFL 12]
          Length = 361

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 63/325 (19%), Positives = 117/325 (36%), Gaps = 18/325 (5%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P +    I +   P+     +    S T    I  +  + +FI+  L +    + +  
Sbjct: 30  ILPFVVGGAIAYFLDPVADRLEA-MGLSRTISTAIIALVAVFVFIIAALLIIPTLIQQTI 88

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPG--GMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
            L          G  +P+ LS +          L     +  +SL  L E     +G   
Sbjct: 89  AL----------GEAIPQILSQLQAFLSERFPSLNDPESTIRESLATLGEMIRSRSGELV 138

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
              FAS  G   ++  + II   +  F+   D  ++  ++D L      A  +K++  V 
Sbjct: 139 NKVFASALG--VINAVIFIIVCPVVAFYLLLDWDNMVARIDDLLPLDHKATIRKLAGEVD 196

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
            V+     G   + +  G     A  L G+   + +G +  ++  IP    +    +SI 
Sbjct: 197 GVMAGFVRGQLTVCLILGTFYSIALMLVGLQFGLVVGAVAGLLTFIPYVGSLVGGTLSIG 256

Query: 269 LLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           L I    G+      + L   +   I    L P LVG  + L  +   F L       G 
Sbjct: 257 LAIFQFWGDPGWIVAVALIFILGQMIEGNYLTPKLVGDSVGLHPVWLLFALSAFGTAFGF 316

Query: 326 LGLFIGPVLMALIAVIWKESIMAIK 350
           +G+ +   + A+I V+ + +I   +
Sbjct: 317 VGMLVAVPVSAMIGVLVRFAIGQYR 341


>gi|239933176|ref|ZP_04690129.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
          Length = 367

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/349 (15%), Positives = 119/349 (34%), Gaps = 17/349 (4%)

Query: 14  WMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +++ +  V L+    +     P++ AL++   +WP+ + F+ ++  +    A + TV  
Sbjct: 21  LLVLVMAAVVLWVVGWMWPVVWPLVVALLLTTLTWPL-ARFLRRRGVAPALAASVVTVLF 79

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +    +  +      +  EL   VV   +                WA+          
Sbjct: 80  LLVAAGTVALIAVPVASQSGELADGVVEGIRRL------------REWAAGPPLNIDDDQ 127

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +    + T    +    I   A           ++ +  +  +FFF +DG      L  
Sbjct: 128 IAHAFDAATARIQDSAGSIANTAVTGVSTVFSGVVTAVLALFLMFFFLKDGPRFLPWLGR 187

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                       ++      + +      ++ + + + +G   WL  VP  + L V+T +
Sbjct: 188 QLPGRLATDIPTVAARCWDSLGAFVRSQALVGLLDAVGVGLGLWLLDVPLVLPLAVLTFV 247

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            A +P  GA  +     +  L+   + NA  +     +   +     +P +    + L  
Sbjct: 248 AAFVPIVGALFAGFVAVLIALVSNGLTNALLVLAVIIVVQQLEGNVFQPIIQSRGLGLHA 307

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                 +  G    G+ G F+   +  LIAVIW      + +  +   +
Sbjct: 308 AVVLLAVTLGGSLAGIAGSFLAVPVAGLIAVIWNYVREQLSDPPQDPGA 356


>gi|194364749|ref|YP_002027359.1| hypothetical protein Smal_0971 [Stenotrophomonas maltophilia
           R551-3]
 gi|194347553|gb|ACF50676.1| protein of unknown function UPF0118 [Stenotrophomonas maltophilia
           R551-3]
          Length = 389

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/348 (15%), Positives = 130/348 (37%), Gaps = 16/348 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +   +I   ++ L     P + AL + +   P+     +                V+ +
Sbjct: 19  ILFAGLIGWIVWLLAPILTPFVLALALAWLGDPLVDRIEATGRSR--------MTGVVLV 70

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL--SDIPGGMWASELWTKHLSHPQ 131
           F   +L +    ++ +  +  ++            WL    IP     + L       P 
Sbjct: 71  FAAMVLVIVALLLVLVPMIERQITTLIAVAPQAQAWLMEKGIPWFEQKTGLEVMQWMDPD 130

Query: 132 SLKILSETFLKTNGI--DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            L     +  +  G        + SR G   + + ++I+ + I  F+F RD   + +++ 
Sbjct: 131 RLIEWVRSHWQQAGGFATTFMGYVSRSGFAMVTWVVNILLLPILAFYFLRDWDKLVERVA 190

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           S+           ++R   +V+ +   G  ++ +  G++      L G+   + +G+I  
Sbjct: 191 SVIPRNQIGTISALARESNEVLGAFIRGQFLVMLALGVIYAGGLSLVGLKLGLLIGLIAG 250

Query: 250 IMAMIP---GGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +++ IP       I    V+  +  +G ++     + +   +   +    L P +VG  I
Sbjct: 251 LISFIPYLGATTGILMAIVAALVQAQGFDLKLLILVGVVFTVGQLLESYVLTPRIVGDKI 310

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L  +   F ++ G +  G LG+ +   + A+  V+ + +    ++++
Sbjct: 311 GLHPVAVIFAVMAGGQLFGFLGMLLALPVAAVTNVLLRYAHQRYRQSE 358


>gi|315613038|ref|ZP_07887949.1| membrane protein [Streptococcus sanguinis ATCC 49296]
 gi|315315148|gb|EFU63189.1| membrane protein [Streptococcus sanguinis ATCC 49296]
          Length = 369

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/339 (13%), Positives = 113/339 (33%), Gaps = 10/339 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            II   +  +     P L      + + P+ +    + + +     ++   +++   +V 
Sbjct: 29  AIITPFVTVVNTIMIPFLLGGFFYYITNPVVTFLEKRCKINRLIGVLVTLCALIGAIVVG 88

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +++L    + ++  L+            +   L D+   +  + ++          ++  
Sbjct: 89  VVYLLPILINQLTSLIISSQN-------IYSRLQDLIIDLSMNPVFQNIDIQKTIQQLNL 141

Query: 138 ETF-LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               +  N ++ +               L +I   + L +F  DG  +   L+       
Sbjct: 142 SYVDILQNILNSVSNSLGSVLSALFSTVLILIMTPVFLIYFLLDGHKLLPMLERTVLKHD 201

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
                 +   +   I     G+ I A+  G +    Y + G+   +   + + I  +IP 
Sbjct: 202 KLNLSSLLTNLNTTIARYISGIAIDAVIIGCLAYIGYSVIGLKYALVFAIFSGIANLIPY 261

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G  I    + I  +   +         +  I   I    L P +VGG +K+  +     
Sbjct: 262 VGPSIGLIPMVIANVFT-DPHRMLIAVAYMLIIQQIDGNVLYPRIVGGVMKVHPITILVL 320

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L+      G++G+ +     ++   I K      + +KE
Sbjct: 321 LLLSSNIYGVIGMVVAVPTYSIFKEITKFLAKLYENHKE 359


>gi|218135102|ref|ZP_03463906.1| hypothetical protein BACPEC_03007 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990487|gb|EEC56498.1| hypothetical protein BACPEC_03007 [Bacteroides pectinophilus ATCC
           43243]
          Length = 442

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/333 (14%), Positives = 113/333 (33%), Gaps = 21/333 (6%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYS-------SFISKKEESSTFLA----VIATVSVMCLF 74
            ++ F   +    ++ +   PI           I  K ++          I  V  + LF
Sbjct: 76  IMQPFIIGI----VLAYIVNPIMMVVEGIVMRLIGPKVKNPKTAEKTARGIGIVCALMLF 131

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGG--MWASELWTKHLSHPQ 131
           I+ ++FL    + ++   V  VV +    I     W++++  G    ++ +    +S   
Sbjct: 132 ILIIVFLLELIIPQIISSVQGVVGSLPDEISSFVAWVTEVTRGNEQISNMVEKGIISGTD 191

Query: 132 SLKILSETFLKTNGIDFIPRFAS---RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
            +    +  L      +I    +       I ++  + II  +  L    R      + +
Sbjct: 192 FIGKWVQDHLLPQANTYIVSITTGVVNVARIVVNVFVGIIISVYVLASKERFIGQSKKMI 251

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            ++ +        + +R   ++     +G  I ++  G++      +  +P    + VI 
Sbjct: 252 YTMFDAKRGNIIIRTARKSNEIFGGFIMGKIIDSLIIGVLCYVGLLILRMPYPTLVSVIV 311

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            +  +IP   P      S  ++   N        ++  +   +    + P ++G    L 
Sbjct: 312 GVTNVIPFFGPYIGAVPSFIIITLANPIKGLYFLVFILVLQQLDGNVIGPKILGDSTGLS 371

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                F ++      G  G+ +G    A+I  I
Sbjct: 372 PFWVVFAIIAAGGIFGFAGMLLGVPTFAVIYYI 404


>gi|160881610|ref|YP_001560578.1| sporulation integral membrane protein YtvI [Clostridium
           phytofermentans ISDg]
 gi|160430276|gb|ABX43839.1| sporulation integral membrane protein YtvI [Clostridium
           phytofermentans ISDg]
          Length = 374

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/321 (16%), Positives = 114/321 (35%), Gaps = 6/321 (1%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  FF P + A I+   + P+      + + +    + I  + V+ L    L  +     
Sbjct: 32  LLAFFLPFVVAYILSLIANPLVKFMEKRIKIARKHGSAIIIILVLALIFGLLYLVLSILF 91

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E+  L++ +    Q        +S          L     +   +L   ++  L     
Sbjct: 92  REIYSLITDLPNIAQQIAESIEGIST-KFASLYEALPQGLKTFLDNLNTSAQGSLDKLLS 150

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMII---ALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
                   + G +   +  ++  MII   A +FF  D   I    + +       + + I
Sbjct: 151 GVDLTSVIKAGGVVSTFTNTVFMMIITILATYFFIVDRDKIIAAANKILPESIKRFNRII 210

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISF 262
           S      +   F     I I   +V+   +   G+   + L +  A++  +P  G  + F
Sbjct: 211 SDNFKTAVGGYFKAQFKIMIILTVVMFITFEFMGINYSILLALTIAVIDFLPVLGTGLVF 270

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++   I  N   A  + +   +   I+ + L+P +VG  I +    T   +  G + 
Sbjct: 271 WPWAVISFINENYVEAIVILVLY-LACQIIKQVLQPKMVGDSIGINPFQTLLFMFIGYKL 329

Query: 323 MGLLGLFIGPVLMALIAVIWK 343
            G+ G+  G  +  ++  +++
Sbjct: 330 YGIGGMIFGIPIGMVLVSLYR 350


>gi|86146847|ref|ZP_01065166.1| permease PerM [Vibrio sp. MED222]
 gi|218710275|ref|YP_002417896.1| putative permease perM [Vibrio splendidus LGP32]
 gi|85835299|gb|EAQ53438.1| permease PerM [Vibrio sp. MED222]
 gi|218323294|emb|CAV19471.1| putative permease perM [Vibrio splendidus LGP32]
          Length = 358

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/352 (14%), Positives = 117/352 (33%), Gaps = 14/352 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +    I+    +++YF     AP+L A+++ +   WP+    + +     T   ++
Sbjct: 15  DPHAVSLVAIILFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQ--LQRLGVPRTPSVML 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +    + ++ L  L      ++  L++ +         + ++++ IP           
Sbjct: 73  VILMFFSVMLLALFGLVPTIWEQVGNLINDIPSMYGG---LQKFIATIPERYPELANLQI 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S   + K  +  F ++     +    S          + +I + + +FF  +D   + 
Sbjct: 130 VESIVSNAKNKALGFGESVVKGSLASLVS-----LATLAVYLILVPLLIFFLLKDKEEMI 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                +          K+   + + I +   G  +  +  G V    + +  +     L 
Sbjct: 185 SMASGVLPK-NRRLATKVWVEMNQQISNYIRGKVLEILIVGGVSYVTFAILDLRYSALLA 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V      +IP  GA      V+I  L   G       L L   I   +    L P L   
Sbjct: 244 VAVGFSVLIPYIGAAAVTVPVAIVGLFQWGLEPQFYWLLLAYGIIQALDGNVLVPVLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            + L  +     ++      G  G+F    L  L+  +W        ++  +
Sbjct: 304 AVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWNALPSHALDDDPE 355


>gi|331266508|ref|YP_004326138.1| hypothetical protein SOR_1140 [Streptococcus oralis Uo5]
 gi|326683180|emb|CBZ00798.1| conserved hypothetical protein [Streptococcus oralis Uo5]
          Length = 369

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/338 (13%), Positives = 114/338 (33%), Gaps = 8/338 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            II   +  +     P L      + + PI +    + + +     ++   +++   +V 
Sbjct: 29  AIITPFVTVVNTIMIPFLLGGFFYYITNPIVTFLEKRCKINRLIGVLVTLCALIGAIVVG 88

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +++L    + ++  L   ++ +      +   + D+        +  +      +L  + 
Sbjct: 89  VVYLLPILINQLTSL---IISSQNIYSRLQDLIIDLSMNPVFQNIDIQQTIQQLNLSYVD 145

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              +  N ++ +               L +I   + L +F  DG  +   L+        
Sbjct: 146 ---ILQNILNSVSNSLGSVLSALFSTVLILIMTPVFLIYFLLDGHKLLPMLERTVLKHDK 202

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-G 256
                +   +   I     G+ I A+  G +    Y + G+   +   + + I  +IP  
Sbjct: 203 LNLSSLLTNLNTTIARYISGIAIDAVIIGCLAYIGYSVIGLKYALVFAIFSGIANLIPYV 262

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           G  I    + I  +   +         +  I   I    L P +VGG +K+  +     L
Sbjct: 263 GPSIGLIPMVIANVFT-DPHRMLIAVAYMLIIQQIDGNVLYPRIVGGVMKVHPITILVLL 321

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           +      G++G+ +     ++   I K      + +KE
Sbjct: 322 LLSSNIYGVIGMVVAVPTYSIFKEITKFLAKLYENHKE 359


>gi|295098778|emb|CBK87867.1| Predicted permease [Eubacterium cylindroides T2-87]
          Length = 386

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 121/333 (36%), Gaps = 14/333 (4%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESST--------FLAVIATVSVMCLFIVPLLFLFYYG 85
           ++   +I +    + +      E+S           ++++A++  + L I  +L +    
Sbjct: 44  LVFGGMIAYVLNLVMNRIEKLLEKSKNKFVLKIKRVISLLASLCCVALIIYFVLAIVIPT 103

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + +  +++  V+   Q+     ++LS++             L       I        NG
Sbjct: 104 LGQAGQVLIDVLP--QYFNDTIKFLSNLFENNPHIVEMINGLEINWKEMIDQTLSFLGNG 161

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK--- 202
           +  +         I ++   + I  II   +   D     +    LG+       K    
Sbjct: 162 LGNVLGSTFNMVNIVVNSVFNTILSIIFAIYVLLDKERFIRLYHRLGDLYLGKDRKDKLT 221

Query: 203 -ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
              +I+ +   S   G  I A   G +  +  +L  +P  + +GV+  ++ +IP      
Sbjct: 222 SALKIINQSFGSFIGGQCIEATILGTLCATGMYLLNMPYPLMIGVLVGLINIIPMIGAYI 281

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
             A+ ++++   +   +    ++  I        + P +VG  + LP +     +V    
Sbjct: 282 GGAIGMFMVFTVDPMMSLGFLVYLCILQQFESNVIYPRVVGSSVGLPGIYVMMTVVVFGS 341

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             G+ G+F+G   +A I  + K  I   ++  E
Sbjct: 342 LAGIPGMFLGIPTVASIYKLAKIHIQNKEKELE 374


>gi|55378831|ref|YP_136681.1| hypothetical protein rrnAC2127 [Haloarcula marismortui ATCC 43049]
 gi|55231556|gb|AAV46975.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 236

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 89/216 (41%), Gaps = 2/216 (0%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
              + +   A           L  +   I ++       +  + +       +     ++
Sbjct: 21  AARETLTAVAVDLAAESPVLALKAVLFSILVYAMLWRPQAPKKAVYRTVPASYHEVVNRL 80

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISF 262
            + +   + + ++     A G  +V    +WL G     AL V+  I+  +P  G  +  
Sbjct: 81  HQRLRGTLYAIYVLQAATAFGTFVVAWVVFWLLGYQGAFALAVVAGILQFVPVIGPSVVV 140

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
             +++  +I GNI  A  + ++G + + F+ D  +RP L      LP    F G  GGV 
Sbjct: 141 LTIAVADIINGNITGAVLVTVFGLVFVGFLPDAVIRPKLARYTTGLPASLYFVGFTGGVL 200

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           T+G++G   GPV++AL+  +        + ++++++
Sbjct: 201 TLGVIGFIAGPVVIALLVELSSLLTSERQGDQQRLT 236


>gi|163788240|ref|ZP_02182686.1| hypothetical protein FBALC1_07663 [Flavobacteriales bacterium
           ALC-1]
 gi|159876560|gb|EDP70618.1| hypothetical protein FBALC1_07663 [Flavobacteriales bacterium
           ALC-1]
          Length = 362

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/346 (14%), Positives = 121/346 (34%), Gaps = 18/346 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            + + + L  LY ++     +  A +I     PI      K + ++T   V+  V ++ L
Sbjct: 17  LLAVALALFFLYKIQSVIVYIAVAAVISLIGRPIVIFLRRKLKFNNTVAVVVTMVLLIGL 76

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +  +       + +   L           + + +  S++         + +        
Sbjct: 77  LVGLVGLFIPLIVEQGHNL---------SLLNIEQLQSNVENLYDQIVTYFEFQKIDVEQ 127

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            I     L       IP F + F      + + +  ++   FFF +D       + +   
Sbjct: 128 SIKDSNLLSKLDFAVIPNFLNSFISGLGSFSIGLFSVLFISFFFLKDSKLFEDGIMTFIP 187

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  K+    +  ++   F+G+    +   ++      + G+ + + +  + A++ +
Sbjct: 188 KGNEMRSKRSFTKIKDLLSRYFVGLIFQILILFVIYTIVLLIFGIDNAIVIAFLCALLNL 247

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNA--------TCLFLWGAIELFIVDKTL-RPFLVGGP 304
           +P   P+    + + L +  N+  +        T   + G +   +VD    +P++    
Sbjct: 248 VPYVGPLVSGFLMLLLSMSSNLGESFSDVILPKTTYIMIGFVIAQLVDNFFSQPYIFSKS 307

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +K   L  F  ++      G++G+ +       I VI KE +   K
Sbjct: 308 VKSHPLEIFLVIIIAGILFGIIGMIVAIPAYTAIKVILKEFLSEYK 353


>gi|253579961|ref|ZP_04857229.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848960|gb|EES76922.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 382

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 62/350 (17%), Positives = 128/350 (36%), Gaps = 14/350 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS---------TFLAVIATVS 69
           I++ ++  L GF  P +    I F                +              ++ V 
Sbjct: 30  IVISTVRVLLGFLFPFIIGFGIAFILNIPMKFIEHHLFGKALKQEKKTAQKLARPVSLVL 89

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV-PRWLSDIPGGMWASELWTKHLS 128
            +C  I  ++ +    + E+      +    +  IPV  +W+ ++ G       W + L 
Sbjct: 90  SICFVICIIVIVMLVVVPELGATFVNIAKKIEENIPVFQKWIDNVFGNNPEVVKWAQSLD 149

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 I S   +  NG++ I        M  L   +++    +   +       + QQ+
Sbjct: 150 IEPGKIIDSVLGVLKNGVNNIVSSTVSITMGLLTTAMNVSIGFVFACYVLLQKEKLLQQI 209

Query: 189 DSLGEHLFPA----YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
                 +FP     Y   +  +  ++  +   G  I A+  G +   +  +   P  + +
Sbjct: 210 KKAMYAMFPEKPVRYLAHVWNLANRIFSNFITGQCIEAVILGSMFFVSMTILHFPYAMLV 269

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           GV+ +  A+IP    I    V+ +L++  +   A        I   I    + P +VGG 
Sbjct: 270 GVLISFTALIPLFGGIIGCWVAFFLILMISPVKAVLFLGLFLILQQIEGNLIYPHVVGGS 329

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           + LP +     +  G   MG+ G+ I    +++I  +++E + A  E K+
Sbjct: 330 VGLPSIWVLVAVTLGGSLMGIAGMLIFIPTVSVIYTLFREWVYARLEKKQ 379


>gi|289178270|gb|ADC85516.1| Permease [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 539

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/319 (13%), Positives = 97/319 (30%), Gaps = 15/319 (4%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           ++ AL +     P+    I          +V     ++ + IV +       + +M  +V
Sbjct: 69  IVIALFLALAVEPLVIRLIRH-GWKRGVASVTCLAGLLVIVIVLMALFGNMFVQQMISMV 127

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             +              +               L     L       +K + +      A
Sbjct: 128 KGLPDLYNQFAAFVDAKTHFK------------LPEMNDLGGEIMKNIKGSWVTDFAGQA 175

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
               M  L   L++   ++  F+    G  + + +           +  +  +V   I  
Sbjct: 176 VSTTMGVLGQILNLTTALMVAFYISIAGPKLRRSVCQWIAPRSQRRFLMVWTVVQDQISG 235

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA-MIP-GGAPISFTAVSIYLLI 271
                +I+A      +     +  VP  + L +   I++  +P  G  I      ++   
Sbjct: 236 FLFSRSILAAINAACMSVFLMIIKVPYWLPLALFCGIVSQFVPTLGTYIGGALPVLFAWG 295

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
           +  I  A  + ++  +   I +  L P +    + L     F  ++      G  G F+ 
Sbjct: 296 ERGIGYAIGVVVFITVYQQIENLVLSPKISERTMDLNPCIAFLTVLFFGSIFGAAGAFLA 355

Query: 332 PVLMALIAVIWKESIMAIK 350
             + A I V+ K ++    
Sbjct: 356 LPITASIQVLLKVAMKRYP 374


>gi|295105497|emb|CBL03041.1| Predicted permease [Faecalibacterium prausnitzii SL3/3]
          Length = 420

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/347 (14%), Positives = 115/347 (33%), Gaps = 16/347 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPI-------YSSFISKKEES--STFLAVIATVSVMCLFIVP 77
           L G   P +   +I +   P+          FI +K     +     +  +  + L    
Sbjct: 45  LTGILMPFIYGAVIAYLLKPVCNSIENFLRRFIPEKMNGLINALSVALTILFGLLLVYAL 104

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           ++ +    +  +  L           +     L  I      +EL     +   +     
Sbjct: 105 VMMIVPQLITSVTTLYYTAQANITKFMNWANHLEFIEKNEQITELLNSAYAALNTNLDTW 164

Query: 138 ETFLKTN---GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ----LDS 190
            T+LK      +  I   A+   +  +    ++I  II   +         QQ    L S
Sbjct: 165 NTWLKNTLLPSMQNIVSGAAIGVLNVVTVAKNLIIGIIVAVYMLASRKRFVQQGKLVLHS 224

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +    +     +  +   ++      G  + +   G++      +   PS + + VI  +
Sbjct: 225 IVRPRWAQLITEEVKYADRMFGGFINGKIMDSAIIGVLCYIGCLIFKFPSALLVSVIIGV 284

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             +IP   P      +  L++  +   A    L+  +   +    + P ++G    L   
Sbjct: 285 TNVIPFFGPFIGAIPATLLILIQSPIKALWFVLFVLVLQQLDGNIIGPKILGNTTGLSSF 344

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
              F ++      G +G+ +G  L A+I  + K+ ++   +  ++++
Sbjct: 345 WVLFAILLFGGLWGFVGMIVGVPLFAVIYDVIKKLVIHGLQRHQELT 391


>gi|220934002|ref|YP_002512901.1| protein of unknown function UPF0118 [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995312|gb|ACL71914.1| protein of unknown function UPF0118 [Thioalkalivibrio sp. HL-EbGR7]
          Length = 358

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 58/347 (16%), Positives = 118/347 (34%), Gaps = 14/347 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           +PQ ++  +++      + F     AP+L++LI  +                    AVI 
Sbjct: 15  DPQVVILALLLIFGTAVVVFAGRLIAPLLASLIFAYLLDGAVQKLQRWHMPR--LAAVIL 72

Query: 67  TVSVMC-LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
              V   LFI+ LL L      ++ +LV ++      G  V   L +      + E    
Sbjct: 73  VFVVFVTLFIITLLGLIPLLSQQVTQLVRELPAMIAQGQYVLMELPERYPQFISEEQVRD 132

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            +   ++          T     +   +    M  + + + +I + + +FF  +D  +I 
Sbjct: 133 LIVAIRAEA--------TLLGQRMVSLSLSSAMHLVTFLVYLIIVPLMVFFLLKDKEAIL 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +             ++   V   I S   G  I  +    V    + L G+   + L 
Sbjct: 185 AWITGFLPRDRGL-ASEVWAEVNVKIASYVRGKFIEILIVWAVTYVTFTLFGLNYAMLLS 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIF-NATCLFLWGAIELFIVDKTLRPFLVGG 303
           V+  +  +IP  GA +    V++    +  +      + +   +  F+    L P L   
Sbjct: 244 VMVGLSVIIPYIGAAVVTIPVAMVAFFQWGLGSEFVWVLVAYGVIQFLDGNVLVPLLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            + L  +     ++      GL G+F    L  LI  + +      +
Sbjct: 304 VVNLHPVAIIAAVIVFGGLWGLWGVFFAIPLATLIQAVIRSWPRHGE 350


>gi|182678281|ref|YP_001832427.1| hypothetical protein Bind_1297 [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182634164|gb|ACB94938.1| protein of unknown function UPF0118 [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 382

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/331 (15%), Positives = 122/331 (36%), Gaps = 9/331 (2%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P  +A+++G+   P+      +   +     ++   + + L +  L+ +      ++ 
Sbjct: 28  ILPFAAAVVLGYLLDPVADHLE-RLGLNRLGATLLILAAFVLLLVAVLILIVPVLGHQLA 86

Query: 91  ELVSK----VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
             +      ++            L+D   G+   +L    LS P+     S+   +    
Sbjct: 87  GFIQSLPEYIIKLQDLISKESDRLTDQYIGVLVGKLGLSRLSGPELAPPTSDMVSQVVQW 146

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMI-IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
                 +   G   L   +S++ +  +  F+   D   +  ++DSL      A  ++++ 
Sbjct: 147 GAGFIKSLWTGGAALVSLISLLVVTPVVAFYMLLDWDKMIAKIDSLIPIRHRATVRELAS 206

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   +     G +++ +  GL  G  + L G+   + +G+   I++ IP    ++   V
Sbjct: 207 EIDGAMAGFLRGQSLVCLFLGLWYGIGFTLVGLNFGLLIGISAGILSFIPYVGSLTALVV 266

Query: 266 SIYLLIKGNI-FNATCLFLWGAIEL--FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              + +  +           G I +  F+    L P LVG  + L  +   F L+     
Sbjct: 267 GSTVAVVQDWPSWHLLAVTLGVIAVGQFLEGNILSPKLVGESVGLHPVWVMFSLLAFGSL 326

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            G  GL     L A + V+ + ++   +++ 
Sbjct: 327 FGFTGLLTAVPLAAAMGVVLRFAVKRYRDSP 357


>gi|331701993|ref|YP_004398952.1| hypothetical protein Lbuc_1641 [Lactobacillus buchneri NRRL
           B-30929]
 gi|329129336|gb|AEB73889.1| protein of unknown function UPF0118 [Lactobacillus buchneri NRRL
           B-30929]
          Length = 369

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 60/166 (36%), Gaps = 1/166 (0%)

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
           + LF+  +DG+ ++  +              +   +   I     G  I  +  G     
Sbjct: 188 VVLFYMLKDGYRLAPTIKKFLPERHREQTMDLLGKMSHTISKYISGQMIECLFVGTFTAI 247

Query: 232 AYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
            Y + G P  + LGVI  I  +IP  G  I      I     G +++     +   I   
Sbjct: 248 GYVIIGTPYALLLGVIAGICNIIPYLGPYIGIAPALIVSFSHGGLWSVVYNIIVVLIVQQ 307

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
           I    + P ++G  +++  L     L+      GL+G+ +   L A
Sbjct: 308 IDGNLVYPNVIGKSLEIHPLTIIIILLAAGNIAGLMGMILAVPLYA 353


>gi|307946764|ref|ZP_07662099.1| ATP/GTP-binding protein [Roseibium sp. TrichSKD4]
 gi|307770428|gb|EFO29654.1| ATP/GTP-binding protein [Roseibium sp. TrichSKD4]
          Length = 361

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/344 (12%), Positives = 109/344 (31%), Gaps = 16/344 (4%)

Query: 5   MLNPQGIMRWMI-MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           M   + +  WMI + + +  ++       P ++ + + +   P+         +     A
Sbjct: 1   MTLRRQVQFWMISLGVFIAFMWLFSPVLLPFVAGMAVAYLLDPVCDRLEDLGMKR--LWA 58

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +  +         +  L  + +L +  L +++    +    +   L  +        L 
Sbjct: 59  TLTILLSF------IFVLVLFFLLILPVLGNQLAAFLERFPELISQLQGLVSRDLIERLA 112

Query: 124 TKHLSHPQSLKILSETFLKTNGIDF--IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                  + L+      L         + +     G   L      +   +  F+   D 
Sbjct: 113 AAAGMTGEDLQASFTNLLGQGATWIAKLAQSIWSGGQALLSIISLFVITPVVAFYLLLDW 172

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +  ++DS          + ++  + + +     G   + +  GL    A  + G+   
Sbjct: 173 DRMIARIDSWLPRDHVVEIRGLACEMDQAVAGFVRGQVSVCVTLGLFYAIALGVVGLNFG 232

Query: 242 VALGVITAIMAMIPGGAP----ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           + +G+   +++ IP        +    V++      +      +     +  F+    L+
Sbjct: 233 LLIGMGAGLVSFIPFVGAGLGFLVSVGVALVQFWP-DWPWVVAVGAVFGVGQFLEGNILQ 291

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           P LVG    L  +   F L       G +G+ I     A+I V+
Sbjct: 292 PKLVGDSTGLHPVTLMFALFAFGYLFGFVGMLIAIPAAAMIGVL 335


>gi|322411655|gb|EFY02563.1| hypothetical membrane spanning protein [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 375

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 113/296 (38%), Gaps = 8/296 (2%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           I  +     F + + ++    +    +L++ +    +   P  + + +            
Sbjct: 80  ICMLLAYLTFFILITWIISIVI---PDLIASISALTKFDTPSIKEVVNQLEHNKLLARVI 136

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL--DYCLSIIFMIIALFFFYRDGF 182
           K++     L     ++ +     FI    +    + +     +++    +   +   +  
Sbjct: 137 KYIGGDAKLTQTITSYSQQLLKQFIGVLTNILTSVTVIASAIINLFISFVFSLYVLANKE 196

Query: 183 SISQQLDSLGEHLFPAYWKKI---SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           S+ +Q ++L +     Y + I     ++       F+  T+ A+  G +  +  +L  +P
Sbjct: 197 SLCRQGNTLVDTYTGKYAQSIHYLVDLLHHRFHGFFVSQTLEAMILGTLTTTGMFLLQLP 256

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               +GV+ A  A+IP        A+   L++  ++  A    ++  I   I    + P 
Sbjct: 257 FAGTIGVLVAFTALIPVVGASIGAAIGFVLIMTQSMSQAIVFIVFLIILQQIEGNFIYPR 316

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +VGG I LP +     +  G    G++G+ I   L A +  + K++I   +  ++K
Sbjct: 317 VVGGSIGLPAMWVLMAITIGASLRGIVGMIIAVPLAATLYQVIKDNIQRKQAIQKK 372


>gi|153814461|ref|ZP_01967129.1| hypothetical protein RUMTOR_00674 [Ruminococcus torques ATCC 27756]
 gi|317500174|ref|ZP_07958407.1| hypothetical protein HMPREF1026_00349 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087599|ref|ZP_08336527.1| hypothetical protein HMPREF1025_00110 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848857|gb|EDK25775.1| hypothetical protein RUMTOR_00674 [Ruminococcus torques ATCC 27756]
 gi|316898463|gb|EFV20501.1| hypothetical protein HMPREF1026_00349 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330399778|gb|EGG79438.1| hypothetical protein HMPREF1025_00110 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 457

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/339 (13%), Positives = 117/339 (34%), Gaps = 17/339 (5%)

Query: 33  PVLSALIIGFTSWPI-------YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           P++  L I +   PI          F+ KK  +      ++    +C+ IV L  + +  
Sbjct: 86  PIVYGLAIAYLLNPIVKAVDRKLLPFLEKKFPNFKQAKSVSRSVGICISIVILATIIFTL 145

Query: 86  M-LEMKELVSKVVLANQHGI-PVPRWLSDIPGGMWASELWTKHLSH-PQSLKILSETFLK 142
             + + EL   +     +    + R++ ++      +      +    +      + +++
Sbjct: 146 FNMMIPELYKSIRDMIMNVPSQMNRFIRELSEMNTENSTIGNIVESVMKEATTFVQNWMR 205

Query: 143 TNGIDFIPRFASRFGMIFLDY-------CLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           T+ +  I  F S   +  L++        + +I  +  LF   +      +   ++ +  
Sbjct: 206 TDLLGRINDFMSGLTVGVLNFMREIMNILIGLIVSVYVLFSKEKFSKQSKKITYAIFKPS 265

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                  ++    ++     +G  I +   G++  +   +  +P  + + VI  +  +IP
Sbjct: 266 NANMILHLTIKSNEIFGGFIIGKIIDSAIIGVLCFAGLSILNMPYAMLVSVIVGVTNVIP 325

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P      S  L++           ++           L P ++G    L      F 
Sbjct: 326 FFGPYIGAIPSAILILLAEPKMGIYFIIFIIALQQFDGNVLGPKILGDSTGLSAFWVVFS 385

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           ++ G    G+ G+ +G    A++  I    +    E K+
Sbjct: 386 ILIGGGLFGVPGMILGVPTFAVVYYIVGMLVNNKLEKKK 424


>gi|262276464|ref|ZP_06054273.1| permease PerM [Grimontia hollisae CIP 101886]
 gi|262220272|gb|EEY71588.1| permease PerM [Grimontia hollisae CIP 101886]
          Length = 360

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 119/356 (33%), Gaps = 14/356 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +    ++ I  V +YF     AP+L A+++ +   WP+      +   + T   ++
Sbjct: 15  DPHAVSLIALLVIGFVVIYFFGNLLAPLLVAIVLAYLLEWPVAKMV--RLGLNRTLSVIL 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  +   I+ L  L      ++  L++ +            ++S +P           
Sbjct: 73  VLLLFVGFMILALFGLMPTIWNQIINLIADIPTMFSG---FQDYVSHLPEAYPELIQPHM 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +   +++       +T     +    S          + +I + + +FF  +D   + 
Sbjct: 130 VNTFIDTVQSRVLGMGETVVKSSLASLVS-----LATLAVYLILVPLLVFFLLKDKEEMM 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +   SL          K+   + + I +   G     I  G+     + +  +   V L 
Sbjct: 185 RSFTSLLPR-NRRLTNKVGVEMNEQISNYIRGKVTEIIIVGITSYITFAILDLRYAVLLS 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATC-LFLWGAIELFIVDKTLRPFLVGG 303
           V T +  +IP  GA      + +  L +  I      L L   I   +    L P L   
Sbjct: 244 VATGLSVLIPYIGAAAVTLPIFVVALFQWGISPELGYLMLAYGIIQALDGNVLVPILFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            + L  +     ++      G  G+F    L  L+  +W        + +    +N
Sbjct: 304 AVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWHALPSHDPDGEVTAETN 359


>gi|58040354|ref|YP_192318.1| putative permease [Gluconobacter oxydans 621H]
 gi|58002768|gb|AAW61662.1| Putative permease [Gluconobacter oxydans 621H]
          Length = 381

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/330 (13%), Positives = 99/330 (30%), Gaps = 7/330 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + +    A + ++ ++      +               AV     V+      L+ LF  
Sbjct: 42  WLIGDVLAVIFASALVAIVLHGLARMLRRHVSVIPYQGAVALVTVVI------LVALFGL 95

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
           G      +  + +   Q  I     L     G    ++   HL         S   L + 
Sbjct: 96  GWYSGPAISDQFIRLKQALITQSGELRTHLSGSTLGQMVLDHLPSSLGGNAASTASLGSL 155

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
           G                    +++ ++IA  +F          +  L         +++ 
Sbjct: 156 GSGLAGSVTGLL-SSVFGILGTLLVVLIAGLYFALSPAVYIDGMLRLVPTQHRPAARELM 214

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
                 + +   G  +  +  G++ G    L G+P  +ALGV   +   IP    I    
Sbjct: 215 LTAGSTLWAWTAGQALDMLVVGMLSGIGLSLIGIPLALALGVEAGLCNFIPYIGAILGAV 274

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            ++ L +      A  + +   +  F     L P +    + +P              +G
Sbjct: 275 PAVLLGLSLGTHEALFVGILYCVIQFFEGNVLAPLIQRRAVHMPPALAILSQTVFGSILG 334

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             GL +   + A +  +  ++   +++  +
Sbjct: 335 APGLILASPITAALLAMGDKATAPLEDENQ 364


>gi|84389749|ref|ZP_00991301.1| permease PerM [Vibrio splendidus 12B01]
 gi|84376850|gb|EAP93724.1| permease PerM [Vibrio splendidus 12B01]
          Length = 358

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/352 (15%), Positives = 117/352 (33%), Gaps = 14/352 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +    I+    +++YF     AP+L A+++ +   WP+    + +     T   ++
Sbjct: 15  DPHAVSLVAIILFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQ--LQRLGIPRTPSVML 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +    L ++ L  L      ++  L++ +         + ++++ IP           
Sbjct: 73  VIMMFFSLMLLALFGLVPTIWEQVGNLINDIPSMYGG---LQKFIATIPERYPELANLQI 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S   + K  +  F ++     +    S          + +I + + +FF  +D   + 
Sbjct: 130 VESIVSNAKNKALGFGESVVKGSLASLVS-----LATLAVYLILVPLLIFFLLKDKEEMI 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                +          K+   + + I +   G  +  +  G V    + +  +     L 
Sbjct: 185 SMASGVLPK-NRRLATKVWVEMNQQISNYIRGKVLEILIVGGVSYVTFAILDLRYSALLA 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V      +IP  GA      V+I  L   G       L L   I   +    L P L   
Sbjct: 244 VAVGFSVLIPYIGAAAVTVPVAIVGLFQWGLEPQFYWLLLAYGIIQALDGNVLVPVLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            + L  +     ++      G  G+F    L  L+  +W        ++  +
Sbjct: 304 AVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWNALPSHALDDDPE 355


>gi|307626826|gb|ADN71130.1| putative inner membrane protein [Escherichia coli UM146]
          Length = 181

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 57/155 (36%), Gaps = 2/155 (1%)

Query: 1   MRETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           +R+     Q ++  + + I I+  L+ ++ F      A  +   +WP+            
Sbjct: 4   VRQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRR 63

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
           +   ++ T+ ++ +FI+P+  L    +     L+ K + +    +P   WL+ IP     
Sbjct: 64  SLAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLI-KAISSGDMTLPDLAWLNTIPVIGAK 122

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFAS 154
                 +L          E+         + R+A 
Sbjct: 123 LYAGWHNLLDSGGDGDHGESPSLYWHHHHLVRWAG 157


>gi|300312358|ref|YP_003776450.1| hypothetical protein Hsero_3054 [Herbaspirillum seropedicae SmR1]
 gi|300075143|gb|ADJ64542.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 374

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/343 (15%), Positives = 134/343 (39%), Gaps = 13/343 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             ++ ++L   Y +      ++ A+   +  +P+       +         IA V V+ +
Sbjct: 15  VFLVALLLYVTYTISATVLVLVFAVFFSYLVYPLVELIERVRPPRVPRTVSIALVFVLAI 74

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            IV  +   +   ++ + L  ++       +     +S +P   +A  L  + L   +  
Sbjct: 75  AIVATVATIFGARIQEEAL--RLSEQLPALLRSNDAVSRLPLPGFAEPLRARILGFVRDQ 132

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI---IALFFFYRDGFSISQQLDS 190
                      G D     A +FG+  +    ++I+++   +  F   ++  ++ +++ S
Sbjct: 133 L--------AAGTDQAMPLAKQFGVGVMHAASNLIYLVLVPVISFLLIKEAPAMREEMLS 184

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                    W  I   +  ++      +  +++   +    A+ L GVP  + L  + A+
Sbjct: 185 WMSRANRKLWDGIVTDLDVLLSRYVRALLFLSVATFVAYSIAFSLMGVPYAMLLAGLAAV 244

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +  IP   P++ +A ++ +       +   L  +        D  L P+L+   +++  L
Sbjct: 245 LEFIPFAGPLAASAAALVVAGFSAYDHLLWLVGFIVAYRVFQDYVLNPYLMSEGVEVSPL 304

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               GL+ G +  G+ G+F+   +MA + +I+  +  A K  +
Sbjct: 305 MVILGLLAGDQLGGVAGIFLSVPVMAALKIIFTRASAAQKARR 347


>gi|227496031|ref|ZP_03926342.1| possible integral membrane protein [Actinomyces urogenitalis DSM
           15434]
 gi|226834424|gb|EEH66807.1| possible integral membrane protein [Actinomyces urogenitalis DSM
           15434]
          Length = 445

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/332 (14%), Positives = 119/332 (35%), Gaps = 9/332 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           ++++ ++ + +  +   F  V  AL++     P+ + F             +AT +    
Sbjct: 101 FLVVALVFLGISRIVPVFVGVFIALVVTAILHPLVTFFARVMPRYPATFLALATTAAFLA 160

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +V   ++      +   L ++          +  ++   P  +  S+   + +   Q L
Sbjct: 161 ALV--YYVVSSVTDQWSSLAAQFSTGVNT---ILDFVEHGPLPIHFSQ--QEVVQTMQGL 213

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
               + ++++N         S  G +   + + +   +    F    G  + +   +   
Sbjct: 214 VNQGQRYVESNATSLAGEVLSNAGTVVNVFVV-LALAVFTSIFLLASGGRMWRWFLNELP 272

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
               +   + +            G  I+A+ + ++ G    + GVP    L V+  I A 
Sbjct: 273 AHLRSRVHRAAGAGWYTFAGYARGTVILALTDAVMAGVFLQVVGVPLAAPLAVLVFIGAF 332

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIKLPFLPT 312
           IP         V++ + +    F A  +   G   +  ++   L+P ++G  + L  +  
Sbjct: 333 IPMIGAPLAMIVAMVVALASKGFVAMVVVGLGVAGIGQIEGHILQPLIMGRQVSLHPVVV 392

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              +  G  + GLLG  +   L+++   ++ E
Sbjct: 393 GIAVAVGTFSAGLLGAVVAVPLVSVAWSVYSE 424


>gi|257869484|ref|ZP_05649137.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
 gi|257803648|gb|EEV32470.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
          Length = 367

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/339 (13%), Positives = 122/339 (35%), Gaps = 11/339 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I+F+           F PVL ++ I +   P ++  I K+  +      +  + ++    
Sbjct: 29  ILFVFRPLEAIFASVFLPVLISVFIFYIFLPFFN-LIKKRSSNQHLALYVTLLLILFAAY 87

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + +  +    + EM   ++++          P  ++ I   +  S           SL I
Sbjct: 88  LIIQVIGPALINEMARFINQI----------PYIINRIIDNIDHSSFEELFGPLLDSLDI 137

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              + L    I       +    I     + +  + + L + ++DG  +   L S     
Sbjct: 138 NQISNLAAQFITGATNSLTSLVAIVSHSAIVLFTIPLLLVYMFKDGHKVPDLLVSKAPKK 197

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F +   ++ +   +   +   G  ++ +  G+     +   G+ + + LG+I  ++ +IP
Sbjct: 198 FRSLILQLCQDFHQAASAYISGKLLVCLYVGVFSYLIFTFLGLQNALLLGLICGVLDIIP 257

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A +    +  ++  A  L +   I  F     + P ++   + +  +   F 
Sbjct: 258 YFGPFIGAAPAFLFALSQDMKTAVLLVIGITIIQFGESYVVSPIVMNKVLHIHPIIAVFL 317

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L+     +G +G+ +   + +++  +        ++ K 
Sbjct: 318 LLIAGNLLGFVGMIVALPVYSIVMAMAGTLTRYYQQQKH 356


>gi|258543033|ref|YP_003188466.1| transporter [Acetobacter pasteurianus IFO 3283-01]
 gi|256634111|dbj|BAI00087.1| transporter [Acetobacter pasteurianus IFO 3283-01]
 gi|256637171|dbj|BAI03140.1| transporter [Acetobacter pasteurianus IFO 3283-03]
 gi|256640223|dbj|BAI06185.1| transporter [Acetobacter pasteurianus IFO 3283-07]
 gi|256643280|dbj|BAI09235.1| transporter [Acetobacter pasteurianus IFO 3283-22]
 gi|256646335|dbj|BAI12283.1| transporter [Acetobacter pasteurianus IFO 3283-26]
 gi|256649388|dbj|BAI15329.1| transporter [Acetobacter pasteurianus IFO 3283-32]
 gi|256652374|dbj|BAI18308.1| transporter [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655432|dbj|BAI21359.1| transporter [Acetobacter pasteurianus IFO 3283-12]
          Length = 381

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/338 (13%), Positives = 106/338 (31%), Gaps = 7/338 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            +I + ++ +      V ++++       +    +        +       +V+C  I  
Sbjct: 49  AVIALVVWLMGDVLMVVFASVLCAVVLHGLSKILVRHLRLPYGWA----LSAVICGLIGS 104

Query: 78  LLFLFY-YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +FL +  G   + E +       Q    +   L   P G          L   Q+    
Sbjct: 105 AVFLVWNSGPAMISEALRLQDALRQQETALRSTLQSTPTGQMILNYLPASLGGHQAGGGD 164

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           + +    +    I    +           +++ ++IA  +F       +     L     
Sbjct: 165 TSSL--ASLGSRIAGSMTGILGSAFGAIGTLLVVLIAGLYFAMSPAIYANGFLRLVPVSK 222

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               + +     + + +   G ++  +  G + G   W  GVP  +ALGV+  +   IP 
Sbjct: 223 RPKVRDLLLRAGQTLWAWVAGQSLDMLVVGTLSGLGLWFIGVPLALALGVLAGLCNFIPY 282

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
              I     ++ L +         + +  ++  F+    L P +    +++P   T    
Sbjct: 283 IGAIMGAVPALLLALSLGTRETIMVAVLYSVIQFLEGNVLAPVIQRHAVQMPPAITVLSQ 342

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                 +G  GL     L A++          + E  +
Sbjct: 343 TLFGAILGFPGLIFASPLTAVLMATLDGLTPKLDEKDQ 380


>gi|113869032|ref|YP_727521.1| permease [Ralstonia eutropha H16]
 gi|113527808|emb|CAJ94153.1| predicted permease [Ralstonia eutropha H16]
          Length = 356

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/314 (13%), Positives = 105/314 (33%), Gaps = 8/314 (2%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
               P L A I  +   P       ++   +     +  + +  + ++ +L        E
Sbjct: 32  PVLTPFLFAFIFAYVLNPGVDWLQRRRVPRA-VGVTLMILLLTVICVMLVLLAIAVLQRE 90

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           + ++  ++ +  +    V       P                +++     +    + +  
Sbjct: 91  IPQIREQLPILLKKLNSVVS-----PRLAEFGVRIRFDFPGLRNMLSDRFSASPEDLLVV 145

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +  +    G   +     +  + I +F+   D   + ++++ +    +    ++++    
Sbjct: 146 LLNYVKMSGSALITVAGIVFIVPIVMFYLMMDWHMVMRRIEGVVPRRWVPKVRELTNETD 205

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
            ++     G  ++ +    +      +AG    V +GV T +   IP         ++I 
Sbjct: 206 ALLSQYLRGQILVMVILAAIYSIGLTIAGFDIGVPVGVFTGLAVFIPYIGFGVGLVMAIL 265

Query: 269 --LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
             LL  GN +    + +      FI    L P LVG  I L  L   F L+   +  G  
Sbjct: 266 AALLQFGNWYGLAAVAVVYGFGQFIESFYLTPRLVGERIGLHPLVVIFALLAFGQLFGFF 325

Query: 327 GLFIGPVLMALIAV 340
           G+ +     A++ V
Sbjct: 326 GVLLALPTCAVLLV 339


>gi|22125311|ref|NP_668734.1| permease [Yersinia pestis KIM 10]
 gi|45442464|ref|NP_994003.1| hypothetical protein YP_2690 [Yersinia pestis biovar Microtus str.
           91001]
 gi|51597105|ref|YP_071296.1| permease protein [Yersinia pseudotuberculosis IP 32953]
 gi|108808253|ref|YP_652169.1| hypothetical protein YPA_2259 [Yersinia pestis Antiqua]
 gi|108811479|ref|YP_647246.1| membrane protein [Yersinia pestis Nepal516]
 gi|145599446|ref|YP_001163522.1| membrane protein [Yersinia pestis Pestoides F]
 gi|149365071|ref|ZP_01887106.1| putative membrane protein [Yersinia pestis CA88-4125]
 gi|153950918|ref|YP_001400221.1| permease PerM [Yersinia pseudotuberculosis IP 31758]
 gi|162421859|ref|YP_001607490.1| putative permease PerM [Yersinia pestis Angola]
 gi|165926924|ref|ZP_02222756.1| putative permease PerM [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165936094|ref|ZP_02224664.1| putative permease PerM [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011254|ref|ZP_02232152.1| putative permease PerM [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166212327|ref|ZP_02238362.1| putative permease PerM [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167399010|ref|ZP_02304534.1| putative permease PerM [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167422722|ref|ZP_02314475.1| putative permease PerM [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167424731|ref|ZP_02316484.1| putative permease PerM [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167470403|ref|ZP_02335107.1| putative permease PerM [Yersinia pestis FV-1]
 gi|170023599|ref|YP_001720104.1| hypothetical protein YPK_1357 [Yersinia pseudotuberculosis YPIII]
 gi|186896196|ref|YP_001873308.1| hypothetical protein YPTS_2894 [Yersinia pseudotuberculosis PB1/+]
 gi|218930113|ref|YP_002347988.1| hypothetical protein YPO3068 [Yersinia pestis CO92]
 gi|229838668|ref|ZP_04458827.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229895732|ref|ZP_04510903.1| putative membrane protein [Yersinia pestis Pestoides A]
 gi|229899234|ref|ZP_04514377.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229901740|ref|ZP_04516862.1| putative membrane protein [Yersinia pestis Nepal516]
 gi|270489933|ref|ZP_06207007.1| putative membrane protein [Yersinia pestis KIM D27]
 gi|294504812|ref|YP_003568874.1| hypothetical protein YPZ3_2702 [Yersinia pestis Z176003]
 gi|21958188|gb|AAM84985.1|AE013744_8 putative permease [Yersinia pestis KIM 10]
 gi|45437329|gb|AAS62880.1| putative membrane protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|51590387|emb|CAH22027.1| putative permease protein [Yersinia pseudotuberculosis IP 32953]
 gi|78926791|gb|ABB51608.1| putative membrane protein [Yersinia pestis]
 gi|108775127|gb|ABG17646.1| membrane protein [Yersinia pestis Nepal516]
 gi|108780166|gb|ABG14224.1| putative membrane protein [Yersinia pestis Antiqua]
 gi|115348724|emb|CAL21670.1| putative membrane protein [Yersinia pestis CO92]
 gi|145211142|gb|ABP40549.1| membrane protein [Yersinia pestis Pestoides F]
 gi|149291484|gb|EDM41558.1| putative membrane protein [Yersinia pestis CA88-4125]
 gi|152962413|gb|ABS49874.1| putative permease PerM [Yersinia pseudotuberculosis IP 31758]
 gi|162354674|gb|ABX88622.1| putative permease PerM [Yersinia pestis Angola]
 gi|165916239|gb|EDR34846.1| putative permease PerM [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165921275|gb|EDR38499.1| putative permease PerM [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989932|gb|EDR42233.1| putative permease PerM [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206258|gb|EDR50738.1| putative permease PerM [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166958429|gb|EDR55450.1| putative permease PerM [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167051514|gb|EDR62922.1| putative permease PerM [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167056613|gb|EDR66382.1| putative permease PerM [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169750133|gb|ACA67651.1| protein of unknown function UPF0118 [Yersinia pseudotuberculosis
           YPIII]
 gi|186699222|gb|ACC89851.1| protein of unknown function UPF0118 [Yersinia pseudotuberculosis
           PB1/+]
 gi|229681669|gb|EEO77763.1| putative membrane protein [Yersinia pestis Nepal516]
 gi|229687636|gb|EEO79709.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229695034|gb|EEO85081.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229701538|gb|EEO89566.1| putative membrane protein [Yersinia pestis Pestoides A]
 gi|262362875|gb|ACY59596.1| hypothetical protein YPD4_2689 [Yersinia pestis D106004]
 gi|262366798|gb|ACY63355.1| hypothetical protein YPD8_2682 [Yersinia pestis D182038]
 gi|270338437|gb|EFA49214.1| putative membrane protein [Yersinia pestis KIM D27]
 gi|294355271|gb|ADE65612.1| hypothetical protein YPZ3_2702 [Yersinia pestis Z176003]
 gi|320014369|gb|ADV97940.1| putative membrane protein [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 354

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 126/358 (35%), Gaps = 18/358 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +PQ I   +I+      LYF  G  AP+L+AL++ +   WP     + +   S +
Sbjct: 10  RRRFTDPQVITLLVILLAGFCILYFFSGILAPLLAALVLAYLLEWPTAR--LQRIGCSRS 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           + A I  V  + + ++ +  +      +   L S           +P+ ++         
Sbjct: 68  WAASIVFVLFVSIMLLAVFVVAPTAWQQGINLAS----------DMPKMINKFNDFAHTL 117

Query: 121 ELWTKHLSHPQSLKILSETFLK--TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                 L     + +++E      +   D + +F+    +  L   + +I + + LFF  
Sbjct: 118 PARYPALVDAGIVDMMAENLRSKMSGLGDSVVKFSLASLIGLLTLAIYLILVPLMLFFLL 177

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D   +   +  +         +     + + I +   G  +  +  G+     +++ G+
Sbjct: 178 KDKEQMLNAVRRVLPRNRGLAGQVWVE-MNQQITNYIRGKVLEMVIVGIATYLVFFIMGM 236

Query: 239 PSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTL 296
              + L V+     +IP  GA I    V +  L +  I      LF+   +   +    L
Sbjct: 237 NYALLLAVLVGFSVLIPYIGAVIVTIPVVLVALFQWGIGADFWTLFVAYLVVQGLDGNLL 296

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            P L    + L  L     ++      G  G+F    L  L+  +          + +
Sbjct: 297 VPVLFSEAVNLHPLVIILSVIIFGGMWGFWGVFFAIPLATLVKAVIHAWPEEFIPDAD 354


>gi|323344768|ref|ZP_08084992.1| membrane protein [Prevotella oralis ATCC 33269]
 gi|323094038|gb|EFZ36615.1| membrane protein [Prevotella oralis ATCC 33269]
          Length = 363

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 60/355 (16%), Positives = 127/355 (35%), Gaps = 19/355 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +++  +L  +  L     P   A +  +  +PI     +K       LA++ T+  +  
Sbjct: 18  ILLVGAVLYGVNCLSSVLLPFFIAWLFAYLLYPIVKFVQNKLRVKVRVLAILITMLFVIG 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH-PQS 132
            +  +L+L    ++E            + G  + RW+         + L  K L    Q 
Sbjct: 78  IVGGILYLIIPPIIE---------QFEKLGDVLSRWIHQTTNTNNITALIQKWLQDNQQE 128

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL---FFFYRDGFSISQQLD 189
           ++    +   T+ +         F        +SI+  +I L   FF   D   +++   
Sbjct: 129 VEKFFRSKDFTDAVKTAVPQVFSFVGQTASVVISIVASLITLLYMFFILLDYEFLTENWI 188

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +      A+W  + + V + + +   G  ++A+  G++    + +   P  + LG++  
Sbjct: 189 RIFPQKHRAFWSDLMKDVERELNNYIRGQCLVALCMGIMFCIGFTILDFPMAIGLGILIG 248

Query: 250 IMAMIPGGAPISFTAVSIYLLI----KGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGG 303
           I+ ++P     +    +   ++     G  F        G   L   I D  + P ++G 
Sbjct: 249 ILDLVPYLHTFALIPTAFLAMLKAADTGQSFWLIFGLAVGLFILIQAITDMIITPKIMGK 308

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            + L        L      +G +GL I   L  L+   W+  +    + KEK   
Sbjct: 309 AMGLNPAILLLSLSVWGTVLGFIGLIIALPLTTLLIAYWQRYVTKEYQIKEKSKE 363


>gi|261380754|ref|ZP_05985327.1| acetyltransferase, GNAT family [Neisseria subflava NJ9703]
 gi|284796473|gb|EFC51820.1| acetyltransferase, GNAT family [Neisseria subflava NJ9703]
          Length = 356

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 60/337 (17%), Positives = 123/337 (36%), Gaps = 10/337 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I+   ++   +  LY L     P + A ++ +   P+       K       ++I     
Sbjct: 13  IIMACVIAAFIWLLYALGDVLTPFIVAAVLAYVLNPLVEWL-QLKRIRRAPASMIIMALA 71

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           + + +  +L +    + +   L  ++  +       +  WL+ I G     +        
Sbjct: 72  LLILLSLVLIIVPMLLNQFNNLAERLPQIVGFVQNKLLPWLNSISG-----DYIQIDQES 126

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             +        L      +IP    + G   +    +++   + L++F  D    S  + 
Sbjct: 127 IIAWLQSHTDELSNTLKAWIPTLMRQSG-NVISGVSNLVLWPLLLYYFLLDWKRWSSGIS 185

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L    F   + +IS  + +V+     G  ++ +  GLV G    L G+ S  A+G+I  
Sbjct: 186 KLVPRRFIETYTRISGNMDEVLGEFLRGQLMVMMIMGLVYGLGLMLVGLDSGFAIGMIAG 245

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGGPIKL 307
           I+  IP     +   ++    +         L +W    +  F+    + P +VG  I L
Sbjct: 246 ILVFIPYLGAFTGLLLATIAALLQYGSWQGLLMVWAVFGVGQFLESFFITPKIVGDRIGL 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                 F L+   + MG +G+  G  L A+  V+ +E
Sbjct: 306 SPFWVIFSLMAFGQLMGFVGMLAGLPLAAVTLVLLRE 342


>gi|75908450|ref|YP_322746.1| hypothetical protein Ava_2233 [Anabaena variabilis ATCC 29413]
 gi|75702175|gb|ABA21851.1| Protein of unknown function UPF0118 [Anabaena variabilis ATCC
           29413]
          Length = 379

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/339 (14%), Positives = 114/339 (33%), Gaps = 17/339 (5%)

Query: 13  RWMIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           +W+ +  I++SLY L         + +A+++  T   +   F            V+A V 
Sbjct: 5   QWIGLIAIVLSLYILWQIKEVLLLMFAAVVLATTLNRLAKRFQRS-GVKRGLAVVLAVVI 63

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              + I     +      +  EL  +V    +       W++++            ++  
Sbjct: 64  FFAIVIGFFWLIVPPFAEQFNELTYRVPQGFER---FNGWINEL--RTRIPAQLVPYIPD 118

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             SL   ++ F+           +    ++     + ++  ++       D  +  +   
Sbjct: 119 LNSLIQQAQPFINRVLGSSFAIVSGSLEVVLKVLLVLVLTGMLLA-----DPIAYRKVFV 173

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L    +      I       +     G  I     GL+      + GV + +ALGV+  
Sbjct: 174 RLFPSFYRRRVDGILDKCEVSLEGWVTGAVIAMGVVGLMSVVGLSILGVKAALALGVLAG 233

Query: 250 IMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            + +IP  G  +S         +  + +    + +   I        + P ++   + L 
Sbjct: 234 FLNLIPNLGPTLSVVPAMAIAFLD-SPWKVVAVLILYFIIQQTESNFITPIVMAQQVSLL 292

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              T    +  V   G LGLF+  + + ++A IW + ++
Sbjct: 293 PAVTLISQLFFVTFFGFLGLFLA-LPLTVVAKIWVQEVL 330


>gi|302542836|ref|ZP_07295178.1| integral membrane protein [Streptomyces hygroscopicus ATCC 53653]
 gi|302460454|gb|EFL23547.1| integral membrane protein [Streptomyces himastatinicus ATCC 53653]
          Length = 474

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 103/307 (33%), Gaps = 19/307 (6%)

Query: 17  MFIILVSLYFLKGFFAPV---LSALIIGFTSWPIYSSFISKKEES---STFLAVIATVSV 70
           + ++  ++Y L    + +   + +  +      +    +++             I  +  
Sbjct: 115 LLVLAGTVYVLMQVISSIQLVVFSFTVALLITALLEPTVTRLRLRGVPRGLATTITFIGG 174

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             +  + + F+ +  M  + EL  K+         + RWL   P  +   ++     S  
Sbjct: 175 FIIMGLVVWFVVWQVMENVDELSDKLQDGID---DLRRWLLHSPFHVTEKQINHIAKSLR 231

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           +++   +E                    + ++    I+  + +  F   DG  I      
Sbjct: 232 EAVGANTEEITSAGLEGV---------TVVVEVLTGILLTMFSTLFLLYDGPRIWGWTLG 282

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L                   + +   G  I+A+ + + +G   +   VP  V L V   +
Sbjct: 283 LVPAAARPGVAGAGPRAWATLTAYVRGTVIVALIDAIFIGVGLFFLDVPMAVPLAVFIFL 342

Query: 251 MAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            A IP    +   A+++ + L+   +F A  + +       I    L+PF++G  +++  
Sbjct: 343 FAFIPLVGAVVSGALAVMVALVTQGVFTAGMVLVVVLAVQQIEGHVLQPFILGRAVRVHP 402

Query: 310 LPTFFGL 316
           L     +
Sbjct: 403 LAVVLSV 409


>gi|229916878|ref|YP_002885524.1| hypothetical protein EAT1b_1151 [Exiguobacterium sp. AT1b]
 gi|229468307|gb|ACQ70079.1| protein of unknown function UPF0118 [Exiguobacterium sp. AT1b]
          Length = 375

 Score = 81.0 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/320 (14%), Positives = 110/320 (34%), Gaps = 7/320 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F      P L A ++ + +        S+ +  S  + +I    ++      +LF+   G
Sbjct: 39  FFATVLTPFLIAGVLFYLTVGFVDWLESRLKRRSFAILIILLFLLLLA----VLFVITLG 94

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            +  ++L + +    +      R L ++   +     +  +++  ++        L    
Sbjct: 95  PILTRQLFALLDAFPRVAEASYRQLVNLYRALEEYTWFQNYINQNETSIDTWIRQLTDTV 154

Query: 146 IDFIPRFASRFGMIF---LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              I   A   G +    +    ++   +    F   DG  ++  +       +    ++
Sbjct: 155 GAVIGSVAGSLGRVLAFIISGLFTLFIALFLYVFMLIDGGKLASAIVRWVPRTYEQDARQ 214

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           I   + + I+       I+    G     A WL  VP  + LG+      +IP   P   
Sbjct: 215 ILHDMHETIKRYVRAQLIVCTFVGFFATIALWLLDVPFFLPLGIFIFATNIIPYFGPFLG 274

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
            A ++ +        A  + +   I   +    + P + G  +++  +     L+   R 
Sbjct: 275 AAPAVLIAFIDEPVKAIYVIVAITIIQQLDANVISPLVQGKSLRVHPITITLVLLVAGRL 334

Query: 323 MGLLGLFIGPVLMALIAVIW 342
            G++G+ +     A++ V +
Sbjct: 335 AGIVGMLLAVPFYAVLKVTF 354


>gi|160945294|ref|ZP_02092520.1| hypothetical protein FAEPRAM212_02813 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443025|gb|EDP20030.1| hypothetical protein FAEPRAM212_02813 [Faecalibacterium prausnitzii
           M21/2]
          Length = 424

 Score = 81.0 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/347 (14%), Positives = 115/347 (33%), Gaps = 16/347 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPI-------YSSFISKKEES--STFLAVIATVSVMCLFIVP 77
           L G   P +   +I +   P+          FI +K     +     +  +  + L    
Sbjct: 49  LTGILMPFIYGAVIAYLLKPVCNSIESFLRRFIPEKMNGLINALSVALTILFGLLLVYAL 108

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           ++ +    +  +  L           +     L  I      +EL     +   +     
Sbjct: 109 VMMIVPQLITSVTTLYYTAQANITKFMNWANHLEFIEKNEQITELLNSAYAALNTNLDTW 168

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCL---SIIFMIIALFFFYRDGFSISQQ----LDS 190
            T+LK   +  +    S   +  L+      ++I  II   +         QQ    L S
Sbjct: 169 NTWLKNTLLPSMQNILSGAAIGVLNVVTVAKNLIIGIIVAVYMLASRKRFVQQGKLVLHS 228

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +    +     +  +   K+      G  + +   G++      +   PS + + VI  +
Sbjct: 229 IVRPRWAQLITEEVKYADKMFGGFINGKIMDSAIIGVLCYIGCLIFKFPSALLVSVIIGV 288

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             +IP   P      +  L++  N   A    L+  +   +    + P ++G    L   
Sbjct: 289 TNVIPFFGPFIGAIPATLLILIQNPIKALWFVLFVLVLQQLDGNIIGPKILGNTTGLSSF 348

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
              F ++      G +G+ +G  L A+I  + K+ ++   +  ++++
Sbjct: 349 WVLFAILLFGGLWGFVGMIVGVPLFAVIYDVIKKLVIHGLQRHQELT 395


>gi|326383536|ref|ZP_08205222.1| hypothetical protein SCNU_11385 [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326197620|gb|EGD54808.1| hypothetical protein SCNU_11385 [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 381

 Score = 81.0 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/350 (15%), Positives = 119/350 (34%), Gaps = 21/350 (6%)

Query: 17  MFIILVSLYFL-------KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           + II   LY L       +  F PV  A+++     P+ +     +   S  + + A V 
Sbjct: 35  LLIIAAGLYALGKLFLYAEEVFVPVAIAILLSALLSPLVAWLQRHRVPRSAGV-LSAVVL 93

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              +    L F+    ++ +  +   V  +        RWL      + +  L       
Sbjct: 94  TFAIIAAGLTFVVQQLIVGVPRMSGDVAASIAKAR---RWLETGRLHLDSDSLRNVSNDM 150

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              LK    +         I   A     +      + +  I  L FF  DG  I   + 
Sbjct: 151 ITWLKEHEAS---------IATGALDTATVATKLVTAALLTIFLLIFFLYDGHRIWDFVT 201

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +       + +       + ++S      ++A  + + +G    +  VP  + L  +  
Sbjct: 202 KIVPSAHRVHVRGAGDAGYRTLQSYVRATVLVAFIDAVFIGIGLAILRVPMVMPLMALIF 261

Query: 250 IMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           + A IP    ++  ++++ + L     F A  + +   + + +    L+PFL+G  +KL 
Sbjct: 262 LGAFIPIVGSVAAGSLAVLVALATHGWFTAVLVVVVLIVVMQVEGHVLQPFLLGRSVKLH 321

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            +     +  G+   G++G  +   ++A              +  E +  
Sbjct: 322 PVAVILVIAIGLMVAGIVGGLLAVPVLAFANTAITYRPAEGADQDEFVEE 371


>gi|297202806|ref|ZP_06920203.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
 gi|297148203|gb|EFH28885.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
          Length = 425

 Score = 81.0 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/349 (13%), Positives = 112/349 (32%), Gaps = 16/349 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF--LKGFFAPVLSALIIGFTSWPIYSSFISKKEES 58
           M   +     +   +I    L S  F  L G    +L A  +     P  S   ++    
Sbjct: 42  MPRWLPRAMVLALALIAVFQLGSWAFHQLIGLLTNILIAFFLALAIEPAVSKMAAR-GMR 100

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                 +    V+ +    +  L      ++ ++V        +   V  W++    G +
Sbjct: 101 RGLATFLVFFGVLIVTAGFVTLLGSMLAGQIIKIVEDFP---NYLDSVIAWIN----GHF 153

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            +EL    +            +++ +    +   A   G +F      ++ + +  F+F 
Sbjct: 154 HTELKRVDVQEGLLRSDWLRNYVQNSATGVLDVSAQVLGGLF-----QLLTIALFSFYFA 208

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            DG  + + + S+      A   +   I             ++A+  G+          V
Sbjct: 209 ADGPRLRRTICSVLPPARQAEVLRAWEIAVDKTGGYIYSRGLMALASGVAHFVLLQALDV 268

Query: 239 PSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P    L V   +++  IP        A+ + +    + + A  + ++  +     +  L+
Sbjct: 269 PYAPVLAVWVGLVSQFIPTIGTYLAGALPMLVAFTVDPWYALWVLVFVVVYQQFENYMLQ 328

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           P L    + +     F  ++ G   +G +G  I    +A +       +
Sbjct: 329 PKLTSKTVDIHPAVAFGSVIAGTALLGAVGALIAIPAVATLQAFLGAYV 377


>gi|253827757|ref|ZP_04870642.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|253511163|gb|EES89822.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 324

 Score = 81.0 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 57/323 (17%), Positives = 123/323 (38%), Gaps = 18/323 (5%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           +L A ++   +  I+   + K + +     ++  + ++  F+       +Y  + +    
Sbjct: 3   ILIAFLLFIATHSIFQVILKKIKSTFLTSLLMTLLLLVLCFV-----PIFYVAINLASFA 57

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP-QSLKILSETFLKTNGIDFIPRF 152
             + LA+         +  +  G    E     L      L +   +      +      
Sbjct: 58  GNIDLASLQKFFTDMQVKILITGKDFLEYLPVALQQQINDLLLSVNSINWAEILKKALSV 117

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
            ++       +    +F++I LFFFY  G ++ +    +   +     K +   V  VI 
Sbjct: 118 VAKISTNSAYFLSDAVFIVIFLFFFYYYGNALGRYCLEIIP-IEKQQIKTLYDEVSAVIS 176

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI 271
             F    +  + +G++ G         S + LGV     ++IP  G  + +  V  Y L 
Sbjct: 177 VVFYSSIVSMVLQGVLFGILMAFYRYDS-ILLGVFYGFASLIPVVGGTLVWLPVVCYELY 235

Query: 272 KGNIFNATCLFLWGAIEL-FIVDKTLRP--------FLVGGPIKLPFLPTFFGLVGGVRT 322
            GN+ NA  + L+  I +  + D  ++P         L+  P+K+  +  FF ++ G+ +
Sbjct: 236 LGNVTNAIVIALYSIIIIATLADNGVKPFVIAFINRILIETPVKINEMLIFFAIIAGLSS 295

Query: 323 MGLLGLFIGPVLMALIAVIWKES 345
            G  G+ +GP + AL   + +  
Sbjct: 296 FGFWGIVLGPAITALFIAMLRIY 318


>gi|300817742|ref|ZP_07097957.1| hypothetical protein HMPREF9345_02815 [Escherichia coli MS 107-1]
 gi|300529730|gb|EFK50792.1| hypothetical protein HMPREF9345_02815 [Escherichia coli MS 107-1]
          Length = 353

 Score = 81.0 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/347 (15%), Positives = 115/347 (33%), Gaps = 14/347 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +P+ I   +I+      ++F  G  AP+L A+++ +   WP      S       
Sbjct: 10  RRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWP-TVRLQSIGCSRRW 68

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             +++  V V  L ++  + L       +  +     + N+            P  M A 
Sbjct: 69  ATSIVLVVFVGILLLMAFVVLPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +     +    +  + ++ +K +    +           L   + ++ + + +FF  +D
Sbjct: 129 IIDAMAENMRSRMLTMGDSVVKISLASLV---------GLLTIAVYLVLVPLMVFFLLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +          ++ + + + I +   G  +  I  G+     + L G+  
Sbjct: 180 KEQMLNAVRRVLPRNRGLAG-QVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V+     +IP  GA +    V  + L   G        F    I   +    L P
Sbjct: 239 SLLLAVLVGFSVLIPYIGAFVVTIPVGGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L    + L  L     +V      G  G+F    L  LI  +    
Sbjct: 299 VLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAW 345


>gi|298250756|ref|ZP_06974560.1| protein of unknown function UPF0118 [Ktedonobacter racemifer DSM
           44963]
 gi|297548760|gb|EFH82627.1| protein of unknown function UPF0118 [Ktedonobacter racemifer DSM
           44963]
          Length = 372

 Score = 81.0 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/344 (14%), Positives = 110/344 (31%), Gaps = 16/344 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I+ I+   +  + G    +  A +I +   P+                 +  ++++ L
Sbjct: 31  LVIVGILARFIGLIAGPIILLTLAGLIAYIIHPLVKILERVLP--RPLAIAVVFLALLLL 88

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +  L F+    + ++  LV+ +    QH    P +   +                  S 
Sbjct: 89  LVSLLYFVILAAIQQLASLVTSLQTFVQH----PTFQKQLQPIFHFLTQIGSSPQQLVSA 144

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                 +L+    + +P     F        +++I +     +F  DG            
Sbjct: 145 LQQVAGYLQGAVFNILP-----FISNLFAIIINVIILTSFCLYFLIDGSRAVHWFRQNTP 199

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
             F A        + +       G  I+A+   L+        GVP  + L +I  +   
Sbjct: 200 QRFKAKINFFINTLERSFGGYVRGQIILAVIITLITAVGASFIGVPFIILLAIIVFVFEF 259

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK-TLRPFLVGGPIKLPFLPT 312
           +P         + +   +      A  + ++  I   +++   L P ++G  I L  + +
Sbjct: 260 VPIIGAYISGTIGVLFALANGWHTALIMAIFVTIINGVLEGQILAPRILGHAIGLHPIIS 319

Query: 313 FFGLVGGVRTMGLLGLFIGPVLM----ALIAVIWKESIMAIKEN 352
            F L+ G    G++G  +   +     ALI   W        E 
Sbjct: 320 IFALLIGSSLFGIIGAVLAAPIAGLCQALIQACWSNWRTTHPEE 363


>gi|282862278|ref|ZP_06271340.1| protein of unknown function UPF0118 [Streptomyces sp. ACTE]
 gi|282562617|gb|EFB68157.1| protein of unknown function UPF0118 [Streptomyces sp. ACTE]
          Length = 394

 Score = 81.0 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/352 (13%), Positives = 106/352 (30%), Gaps = 22/352 (6%)

Query: 13  RWMIMFIIL--------VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           R MIM + L         + Y L G    ++ A  +     P       +          
Sbjct: 7   RAMIMALALYGCFQLGSWAFYQLIGLLTNIVIAFFLALAVEPAVGRMADR-GMRRGLATF 65

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  ++V+   +  ++ L      ++  ++       ++   V  W++       +     
Sbjct: 66  LVFLAVLIAGVGFVVLLGSMLAGQIANMIEDFP---KYLDSVINWINQTFHTELSRVGVQ 122

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L H   L+   +                      L     ++ + +  F+F  DG  +
Sbjct: 123 DSLLHSDWLQRYVQNS---------ATGVLDVSTTVLGGLFRLLTIFLFSFYFAADGPRL 173

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + L S+      A   +   I             ++A+  G+          VP   AL
Sbjct: 174 RRALCSVLPPARQAEVLRAWEIAVDKTGGYLYSRGLMALISGIAHYVLLVFLDVPYAPAL 233

Query: 245 GVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            V   +++  IP        A+ + +    + + A  +  +  +     +  L+P L   
Sbjct: 234 AVWVGLVSQFIPTIGTYLAGALPMLIAFTVDPWYAVWVLAFVVVYQQFENYVLQPKLTSK 293

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            + +     F  ++ G   MG +G  +    +A +       +       + 
Sbjct: 294 TVDIHPAVAFGSVIAGTALMGAVGALVAIPAVATLQAFLGAYVKRYDVTDDP 345


>gi|154484841|ref|ZP_02027289.1| hypothetical protein EUBVEN_02559 [Eubacterium ventriosum ATCC
           27560]
 gi|149733794|gb|EDM49913.1| hypothetical protein EUBVEN_02559 [Eubacterium ventriosum ATCC
           27560]
          Length = 398

 Score = 81.0 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/327 (14%), Positives = 112/327 (34%), Gaps = 13/327 (3%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEES--------STFLAVIATVSVMCLFIVPLLFLFYY 84
           P      I F      S    K                  I+ +  + L    ++ + + 
Sbjct: 37  PFALGGAIAFVINVPMSFLEKKMLGKIKENNKIGKKAARPISLLLTIILAAGVMVLVMFG 96

Query: 85  GMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMW-ASELWTKHLSHPQSLKILSETFLK 142
            + ++ + +  ++ +    IP  + W+ +         +L  +    P        + L 
Sbjct: 97  VIPQLTQTMGNLMTSISDFIPQMQNWIREFSHDNQDIMKLVDQLQFQPDQAIKWGISLLG 156

Query: 143 TNGIDFIPRFASRFGMI---FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
               + +    S  G I      + +S  F    LF   +    + + + +         
Sbjct: 157 NGVGNMMNTTMSAVGSIASGLATFFISFSFACYILFQKEKLHLQVRKVIFAFIPKQKADA 216

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
              I  +  +   +   G  + A+  G++      +  +P  + +G++ A  A++P    
Sbjct: 217 ILNICSLTYRTFANFLAGQCLEAVILGMMFVITLSILKMPYALLIGILIAFTALVPIFGA 276

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
               AV  +L+   N   A    +   +   I    + P +VGG + LP +     +  G
Sbjct: 277 FIGCAVGSFLIFMVNPKQAVLFIIVFLLLQQIEGNLIYPHVVGGSVGLPSIWVLAAVTIG 336

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESI 346
              MG++G+ I   L+++   I++E +
Sbjct: 337 GNLMGIIGMLIFIPLVSVFYTIFREFV 363


>gi|93006679|ref|YP_581116.1| hypothetical protein Pcryo_1855 [Psychrobacter cryohalolentis K5]
 gi|92394357|gb|ABE75632.1| protein of unknown function UPF0118 [Psychrobacter cryohalolentis
           K5]
          Length = 368

 Score = 81.0 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 114/331 (34%), Gaps = 9/331 (2%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           LY +     P + A ++ +   P+                +I   ++    ++ L +L  
Sbjct: 26  LYLMMPVIVPFVFAFVLAYLFNPLVKRLSKYI--KRWIAIIIVYSTITLSMVLLLWWLIP 83

Query: 84  YGMLEMKELVSKVVLANQ-HGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
               +++     +      +   V  W +             +     ++L    +T  K
Sbjct: 84  TLWHQLQAAWDYLPQLLTWYNEVVREWFAS---NSRIRLPELESKGFSETLVEYMQTNYK 140

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 +        M F++    I+ + I  F+F  +               +     +
Sbjct: 141 FEDAGTMMSQILASSMNFINNAGLIVLVPILTFYFLFNWEQRLHTWKMAIPAPYCKKVIQ 200

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
           I++   + + +   G  ++ +  G +      L G+   + +G++  I + +P  G  I 
Sbjct: 201 IAQECDRALMAFIKGQLLVMVLLGAIYAVQLQLIGLELGLIIGMVAGIASFVPYLGFGIG 260

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIV--DKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           F A  I  L +  +       + GA  +        L+P L+G  I L  L   F ++ G
Sbjct: 261 FVAAIIACLFQFGLDWTYLSLIAGAFLIGQAAEGYILQPLLLGDKIGLSPLWVIFSVLAG 320

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
              +G +G+ I   + A++ V+++      +
Sbjct: 321 ASLLGFVGMLIALPVSAVLNVLFRHFYTHYQ 351


>gi|332157802|ref|YP_004423081.1| hypothetical protein PNA2_0160 [Pyrococcus sp. NA2]
 gi|331033265|gb|AEC51077.1| hypothetical protein PNA2_0160 [Pyrococcus sp. NA2]
          Length = 338

 Score = 81.0 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/357 (14%), Positives = 135/357 (37%), Gaps = 32/357 (8%)

Query: 5   MLNPQGIMRWMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            +  + I+   I+ IIL  ++  LK    P++  +   + ++P +     +  + ++ L 
Sbjct: 3   TVEKERIVWVAIILIILFLVWETLKELITPIVFGITATYLAYPFHVKLSKRFGKRTSILI 62

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++  VS++ +     + +  +    +K L S +            WL  +    + S L+
Sbjct: 63  LLIVVSLLSVMF--FIGVALWITDTLKNLYSYLDAFF-------SWLGSLKVPGFLSSLF 113

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                            + T+  + +     ++ +    + L +I  +   +    +   
Sbjct: 114 DA---------------MATSFPEKLRSILLQYTLSLPKFALQLIVFLAVFYASLSNADF 158

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP---S 240
           +++++  L         +K+   V   I +        +I +G  L   +++ G+     
Sbjct: 159 LAKEIYELIPLSNRELGEKLIDKVKDTIDAIIKTWLFFSIIKGTFLALGFYVFGISNVAG 218

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPF 299
            +A GV+  I+ ++P             LL+K ++  A    ++G + +  + D  ++P 
Sbjct: 219 SIAAGVLCVILELLPVVGGWMMWLAGAVLLLKRSLVLAILFSIYGIMTISPLPDYIIKP- 277

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
                 K+  +    G+ GG    G++G+ +GP+ + L+  +             K+
Sbjct: 278 --KKKAKVSSVVALVGIFGGWIAFGVVGIILGPIAIGLLLALIDAWREISTRQPSKV 332


>gi|226364629|ref|YP_002782411.1| hypothetical protein ROP_52190 [Rhodococcus opacus B4]
 gi|226243118|dbj|BAH53466.1| hypothetical membrane protein [Rhodococcus opacus B4]
          Length = 427

 Score = 81.0 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/307 (15%), Positives = 105/307 (34%), Gaps = 14/307 (4%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           P+      K    S    ++  +  + +    + F+    +  +  L  +   +      
Sbjct: 96  PLVDWLQGKGVPRSA-AVLVVLIGSIGIVAGIMTFVVEQFIEGLPGLTEQFEASVTQ--- 151

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           +  WL+D P      ++     S  +S++   +              A+  G IF    L
Sbjct: 152 IQGWLTDGPFHFSEDQIRQAGDSVVKSIQENRQQLTSGA-----LTTATVVGEIFTGALL 206

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           +    +  L FF   G  I + +  L         +         +         +A  +
Sbjct: 207 T----LFTLIFFLYGGTQIWEFVTRLVPSTSRRRVRLAGSEGFGSLIGYVRATVAVAAAD 262

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLW 284
            + +G+   + GVP  + L  +  I A IP  GA ++     +  L+      A  +   
Sbjct: 263 AVGIGAGLAILGVPLALPLASLVFIGAFIPIVGAFLTGFLAVLVALVTKGFLTALIVLGI 322

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
               + +    L+P L+G  ++L  L     +  G+   G++G  +   ++AL+    + 
Sbjct: 323 IIGVMQLEAHVLQPLLLGRAVRLHPLAVVLAITTGIVLAGIVGGLLAVPIVALLNTAVRS 382

Query: 345 SIMAIKE 351
            + A  E
Sbjct: 383 LLSADPE 389


>gi|183599400|ref|ZP_02960893.1| hypothetical protein PROSTU_02873 [Providencia stuartii ATCC 25827]
 gi|188021642|gb|EDU59682.1| hypothetical protein PROSTU_02873 [Providencia stuartii ATCC 25827]
          Length = 357

 Score = 81.0 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/359 (13%), Positives = 114/359 (31%), Gaps = 14/359 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +PQ +  + ++ +    ++F     AP+L A+++ +   WP +   + +   S  
Sbjct: 10  RRRFADPQAVALFTLLIVGFCIIFFFSNILAPLLVAIVLAYLLEWPTH--LLERIGCSRV 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               I       +  + +L +      +   LV  +    +       +   +P    A 
Sbjct: 68  VAVSIILTLFAGISAMVILIIAPTAWQQGINLVGDLP---KMVTRFNEFAQTLPERYPAL 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                      +L+       ++     +               +  + + + +FF  +D
Sbjct: 125 VDAGIIDMMADNLRSRLSGVAESVVKMSVASLIG-----VFTLAIYTVLVPLMMFFLLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   +  +          K+   + + I +   G     +  G+   + +    +  
Sbjct: 180 KQKIISSVQKVLPR-NRLLVGKVWVEMNQQITNYLRGKVTEMVIVGVCTYAGFAYFDLRY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTLRP 298
            V L V+  +  +IP  GA      V +  L +  I +    L +   +   +      P
Sbjct: 239 SVLLSVLVGVSVLIPYIGAVAVTIPVVLVALFQWGIGSDFWSLIIVYLVIQGLDSNLFVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
            L    + L  L     +V      G  G+F    L  LI  +         E+++K+ 
Sbjct: 299 LLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVINVWPEDTSESQQKLE 357


>gi|325264631|ref|ZP_08131361.1| putative membrane protein [Clostridium sp. D5]
 gi|324030293|gb|EGB91578.1| putative membrane protein [Clostridium sp. D5]
          Length = 398

 Score = 81.0 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/347 (13%), Positives = 115/347 (33%), Gaps = 8/347 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES---STFLAVIATVSVM 71
           +++  +   L  +  F      A I+      +  +    K+           ++ V  +
Sbjct: 30  LVLDALAFVLRIVFPFLLGGAIAFILNVPMHFLEKTLFYNKKGKVWVQRLARPLSLVLTI 89

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMW-ASELWTKHLSH 129
              +  +  + +  + ++   V  +    Q  +P +  W+ ++         L       
Sbjct: 90  LFVLGVISLVIFVVVPKLGSTVISLGTTIQDFVPKMQHWVEELFDNNKEIVSLVNDVQID 149

Query: 130 PQSLKILSETFLKTNGIDFIP---RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
              L      F K      +      A         + ++ +F    L    R    I +
Sbjct: 150 WDKLLNGIMEFFKNGAGSVLGSTFTVAKSIVSGVTTFVIAFVFACYILLQKERLNIQIRK 209

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            + +  +         +  +  K   S   G  + A+  G +   A  +  +P  + +GV
Sbjct: 210 IMYAYMKKDLVKKVLDVCSLTYKTFSSFLTGQCVEAVILGTMFVIAMSVFRLPYALLVGV 269

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           + A  A+IP         V  +L++      A    +   +   I    + P +VG  + 
Sbjct: 270 LIAFTALIPIFGAFIGCFVGAFLILMVAPMKALMFVIMFLVLQQIEGNLIYPKVVGSSVG 329

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           LP +     +  G   MG++G+ +   +++++  + + ++     NK
Sbjct: 330 LPSIWVLAAVSIGGSLMGVVGMLVFIPVVSVLYTLLRNNVYGRLANK 376


>gi|319937570|ref|ZP_08011975.1| hypothetical protein HMPREF9488_02811 [Coprobacillus sp. 29_1]
 gi|319807410|gb|EFW04019.1| hypothetical protein HMPREF9488_02811 [Coprobacillus sp. 29_1]
          Length = 337

 Score = 81.0 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 57/342 (16%), Positives = 123/342 (35%), Gaps = 14/342 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   + I    ++    V  Y     F P   A++  F   P+            + + V
Sbjct: 1   MKRTKVIGLICVVIYCFVLKYMFHVIF-PFAFAVVCYFVMKPLIDRLEKCFHIQRSAIGV 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
              + +  +  + L  LF YG+        K+ +  +  +        +P     +    
Sbjct: 60  SLLLVIYLILAILLGCLFTYGVFFTIHFFEKIPMYYEDML--------LPFLEQLTIWVQ 111

Query: 125 KHL--SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           +H      +   +  + FL  + ++    F++    I + Y  S    +I+ FFF  D  
Sbjct: 112 QHFPILMNEDYLLALQNFLGQSLLNVAGSFSTVITQIPI-YLFSFFLFVISTFFFMLDYE 170

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +   L S+        + +I     K +        I+      +L   + +  +   +
Sbjct: 171 EMKGNLLSICSQHVMNSFVRIKNKCLKSLWVYVKCQLILMSICFFILLIGFAVMRMSHPL 230

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
               +TA++  +P  G  I    + I  L++G    A  +FL   + + +V   L P ++
Sbjct: 231 LYAFVTALLDSLPFIGVGIVLIPLCIVYLLQGAYLKAFYIFLIY-LIINVVRSLLEPRIM 289

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              +K+P       ++  +   G++G+ + P+ M+LI     
Sbjct: 290 NKQMKIPSFLLLLSMMVHLYFFGMIGVILSPIHMSLIYGFLD 331


>gi|308174162|ref|YP_003920867.1| hypothetical protein BAMF_2271 [Bacillus amyloliquefaciens DSM 7]
 gi|307607026|emb|CBI43397.1| RBAM_021860 [Bacillus amyloliquefaciens DSM 7]
          Length = 356

 Score = 81.0 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/311 (14%), Positives = 112/311 (36%), Gaps = 10/311 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P++ + ++ +   PI      K +       +        LF++ L         +  
Sbjct: 41  FPPIVLSGVLYYLCRPIVRVLHEKVKLPEGIAILAIYAVTAGLFVLFLYTAGPAVQKQFA 100

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
                +   +        W+  +         W   + H  S K  ++     +G   I 
Sbjct: 101 AFTDHIPELS---AKAENWIRHL-----QDSKWFSRIQHEDSFKKAADKAANYSGS--IA 150

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              S       +  ++   +  AL++  ++G    ++L  L         K+I + + + 
Sbjct: 151 DSLSSLAGAAANAAITAAIIPFALYYMLKEGNKAPRRLLRLLPEKHQKEGKQILQDMDEA 210

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G  +++   G+++ + Y++ G+   + LG    +  +IP   P   T   + + 
Sbjct: 211 LSSYIQGQLLVSFCVGVLVTTGYFIIGLDYPLVLGAFAMVTNLIPFIGPWIGTFPGVIVG 270

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +  +   A  + +   I   +  + + P ++G  + +  L   F L+   +  G+ G+ +
Sbjct: 271 LFDSPTRAVLVVIVVVIVQQLESQLISPQIMGRKLDIHPLTIIFLLLAAGKFSGIAGMLL 330

Query: 331 GPVLMALIAVI 341
                A+  VI
Sbjct: 331 AIPGYAVAKVI 341


>gi|156742454|ref|YP_001432583.1| hypothetical protein Rcas_2485 [Roseiflexus castenholzii DSM 13941]
 gi|156233782|gb|ABU58565.1| protein of unknown function UPF0118 [Roseiflexus castenholzii DSM
           13941]
          Length = 435

 Score = 81.0 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/355 (13%), Positives = 118/355 (33%), Gaps = 17/355 (4%)

Query: 9   QGIMRWMIMFIILVS----LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + I RW ++ + + S    L+  +    P +  L++ +   P    F            +
Sbjct: 54  RLIARWSLVALAVYSIGWMLWTTRPVLIPFIIGLVLAYLMAPAVDFFDRWMP--RWLSIL 111

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKV---VLANQHGIPVPRWLSDIPGGMWASE 121
           +  +            +    + +++ L+ ++            + R   D         
Sbjct: 112 VVYILGFLGIAATFALIIPPLIEQVERLIHQLPSFREVQTFIDSIIRQYRDQVPPSLQQP 171

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +     +  +SL+   +T+L+  G            +  + + L  I + I LF+   D 
Sbjct: 172 IEDSLANLLRSLQNNIDTYLQRGGA--FLLNQLIQLLNTVTFILGFISLPIWLFYVLYDK 229

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW---LAGV 238
                  + L      + +  +  IV +V+     G  I+ +  GL +G       + G 
Sbjct: 230 HRGRVFFNQLVHPRARSDFWNVWDIVNRVLGGYIRGQIILCVSVGLAVGIGLVGLEMLGF 289

Query: 239 P---SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
           P     + L +I  +   IP   P       + L    +      + L       + +  
Sbjct: 290 PLGDYILVLSLIAGVTEFIPVLGPTIGAIPGVILGFGISPTAGIAVLLLYIAVQQLENSL 349

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L P ++G  + +        ++      GL G+ +    +A +  ++K + + ++
Sbjct: 350 LVPRIIGESVGVHPAVLTVAMIVMGTLFGLFGILLAAPAVATVRDLFKYTYLRLE 404


>gi|253564021|ref|ZP_04841478.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251947797|gb|EES88079.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|301161674|emb|CBW21214.1| putative transmembrane protein [Bacteroides fragilis 638R]
          Length = 379

 Score = 81.0 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 128/365 (35%), Gaps = 20/365 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFL----KGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M    +     +R  I   ++V L  L     G   P   A +I +  +P+   F  K  
Sbjct: 1   MERKKITFDSFIRGSICCALIVGLLILFKRLSGVLLPFFVAWLIAYMIYPLVKFFQYKLR 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYY-GMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
             S  +++   +  + +  + L +L     + EM  +   +V    +G       S    
Sbjct: 61  FKSRIISIFCALFSITIVGISLFYLLVPPMLAEMGRMNDLLVTYLTNGTY-----SSGTV 115

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGM---IFLDYCLSIIFMII 172
               SE   KH+      +ILSE  +     + +P+  +       I      S I ++ 
Sbjct: 116 PPTLSEFIHKHIDLQALNRILSEENIMNTIKETVPKLWALVAESINILFSVFASFIILLY 175

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
            +F    D  SI++    L    +  +   +   +   +   F G   +A   G++    
Sbjct: 176 VVFILL-DYESIAEGWLHLLPGKYRTFASNLVNDIQDGMNRYFRGQAFVAFCVGILFSIG 234

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI----KGNIFNATC--LFLWGA 286
           + +   P  +ALG+    + M+P    I F    +  ++     G  F        +   
Sbjct: 235 FLIIDFPMAIALGLFIGALNMVPYLQIIGFLPTIVLAILKAADTGENFWVILAGALIVFI 294

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           +   I D  L P ++G    L        L      +G+LG+ I   L  L+   ++  I
Sbjct: 295 VVQAIQDGFLVPRIMGKITGLNPAIILLSLSIWGSLLGMLGMIIALPLTTLMLSYYQRFI 354

Query: 347 MAIKE 351
           +  ++
Sbjct: 355 INKEK 359


>gi|192360496|ref|YP_001981496.1| membrane protein, PerM family [Cellvibrio japonicus Ueda107]
 gi|190686661|gb|ACE84339.1| membrane protein, PerM family [Cellvibrio japonicus Ueda107]
          Length = 401

 Score = 81.0 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/329 (16%), Positives = 112/329 (34%), Gaps = 24/329 (7%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA------TVSVMCLFIVPLLFLFYY 84
            AP+++A++I F    + +               IA      ++  + LFI+P+++    
Sbjct: 74  LAPMMAAMVIAFLMQGMVTRLRQWGMGH-NLAVTIAFVVLLVSLGALLLFIMPIMW--NQ 130

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            +    EL   V+   +  + +P             +L+    +    +     +F  TN
Sbjct: 131 LVRFFNELPRMVIEGQELLMGLPERYPQFLSERQLEQLFASMTAEISGMGQRVLSFSVTN 190

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               I               + +I + I +FFF +D   I         H  P    K+ 
Sbjct: 191 IPMLIG------------LMIYLILVPILVFFFLKDSSLIMAWCARFLPHHRPV-MAKVW 237

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFT 263
           + + +   +   G  I  +  G V   A+   G+     L +   +  +IP  GA +   
Sbjct: 238 QEMNQQFANYVRGKVIEIVIVGAVSYVAFICLGLNYAALLAIAVGLSVVIPFIGAAVVTL 297

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
            V++    +          +     + ++D   L P L    + L  +     ++     
Sbjct: 298 PVALVAYFQWGWSAPFIYLMLAYTIIQVLDGNVLVPLLFSEAVNLHPVAIILAVLVFGGL 357

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            G  G+F    L  L+  I     +A++E
Sbjct: 358 WGFWGVFFAIPLATLVKAILYAWPIAVQE 386


>gi|170767574|ref|ZP_02902027.1| permease PerM [Escherichia albertii TW07627]
 gi|170123908|gb|EDS92839.1| permease PerM [Escherichia albertii TW07627]
          Length = 353

 Score = 81.0 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 53/347 (15%), Positives = 115/347 (33%), Gaps = 14/347 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +P+ I   +I+      ++F  G  AP+L A+++ +   WP      S       
Sbjct: 10  RRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWP-TVRLQSIGCSRRW 68

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             +++  + V  L ++  + L       +  +     + N+            P  M A 
Sbjct: 69  ATSIVLILFVGILLLMAFVVLPVAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +     +    +  + ++ +K +    +           L   + ++ + + +FF  +D
Sbjct: 129 IIDAMAENMRSRMLSMGDSVVKISLASLV---------GLLTIAVYLVLVPLMVFFLLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +          ++ + + + I +   G  +  +  G+     + L G+  
Sbjct: 180 KEQMLNAVRRVLPRNRGLAG-QVWKEMNQQITNYIRGKVLEMVVVGIATWLGFLLFGLNY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V+     +IP  GA +    V  + L   G        F    I   +    L P
Sbjct: 239 SLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L    + L  L     +V      G  G+F    L  LI  +    
Sbjct: 299 VLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAW 345


>gi|294676369|ref|YP_003576984.1| hypothetical protein RCAP_rcc00812 [Rhodobacter capsulatus SB 1003]
 gi|294475189|gb|ADE84577.1| protein of unknown function UPF0118, transmembrane [Rhodobacter
           capsulatus SB 1003]
          Length = 367

 Score = 81.0 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 53/351 (15%), Positives = 121/351 (34%), Gaps = 14/351 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  Q  +  +   ++ + L+ L     P L    I +   P+      +   S       
Sbjct: 5   VRSQITIWGLSAAVLALVLWKLGDVLLPFLVGGAIAYFLDPLADRLE-RLGLSRALATTS 63

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +      +V  L +    + ++  LV             P   + + G + ++     
Sbjct: 64  IALIATLGIVVLALAVAPLLVRQLIGLVETA----------PAIATRLQGFLTSTFPSMM 113

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                 +  + S           + +      M  ++  + I+ + +  F+   D   + 
Sbjct: 114 EHGSIINESLTSLGNAVKARGGELAQGLLSSAMTLVNAVVFIVVVPVVTFYMLLDWDRMV 173

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            Q+D+L         +++ R + +V+     G   + +  G    +    AG+   +  G
Sbjct: 174 AQIDTLLPLDHAPTIRQLGRDIDRVLSGFVRGQVSVCLILGAFYAAGLMAAGLSFGLLAG 233

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            I   +  IP    +   A++I L +    G+  +   +    AI  F+    + P LVG
Sbjct: 234 AIAGALTFIPYVGALVGGALAIGLALFQFWGDWMSIGLVAGIFAIGQFLEGNVITPRLVG 293

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             + L  L   F L       G +G+ +   + A+I V+ + +I   ++ +
Sbjct: 294 NSVGLHPLWLIFALSAFGTLFGFVGMLVAVPVSAVIGVLIRFAIEHYRQGR 344


>gi|326202288|ref|ZP_08192157.1| sporulation integral membrane protein YtvI [Clostridium
           papyrosolvens DSM 2782]
 gi|325987406|gb|EGD48233.1| sporulation integral membrane protein YtvI [Clostridium
           papyrosolvens DSM 2782]
          Length = 353

 Score = 81.0 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 125/326 (38%), Gaps = 5/326 (1%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             +I +S+ +L  FFAP + ALI+ + + P+    + + + S    A ++ +  M L  +
Sbjct: 21  FAVIYLSMSYLLPFFAPFVIALIVSYINEPV-IKLLQRLKISRKAAAAVSLLFTMSLLGL 79

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L         E+  L   +   +         L       +         +  ++L   
Sbjct: 80  VLTVGILKMYNELIVLQDNLTKYSSDISVKINGLIHKATLFYNGLPDQVTSTITKNLISF 139

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           SE       I  + ++            + +I  I+  +F   D  SIS          +
Sbjct: 140 SEKI--GLIITSVIQYVINTVSSIPRLTVFVIVTILGTYFISSDKKSISSFFYRQLPFSW 197

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
                 + +   K +   F  + I+     + +    ++  V     + ++  +   IP 
Sbjct: 198 RKNIVSLKKDTFKALLGYFKAILILMGFTFIEVSIGLFILNVDYAFLIALLVGLSDAIPI 257

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G  +      ++ +I G++  A  L +   + + ++ + + P +VG  I L  L T F 
Sbjct: 258 MGTGVVMVPWILWTVISGDMPLALGLSIIYVLGI-LIRQIMEPKIVGSQIGLHPLVTLFA 316

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           +  G++  G++G+F+GP+ + ++  +
Sbjct: 317 MYIGLKFFGIIGMFVGPISIIVVKKL 342


>gi|15790438|ref|NP_280262.1| HtlA [Halobacterium sp. NRC-1]
 gi|169236174|ref|YP_001689374.1| hypothetical protein OE3054R [Halobacterium salinarum R1]
 gi|10580930|gb|AAG19742.1| Htr-like protein [Halobacterium sp. NRC-1]
 gi|167727240|emb|CAP14026.1| conserved hypothetical protein [Halobacterium salinarum R1]
          Length = 382

 Score = 81.0 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 57/365 (15%), Positives = 122/365 (33%), Gaps = 33/365 (9%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSL-YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M +T ++      W I   +  +L Y +  F    +    + + + P+Y         SS
Sbjct: 1   MGDTRIDRGRAAWWAIGATLTAALVYVVYTFVGTFVLGFFLYYATRPVYRRVDRHLRSSS 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
               V   V  + +    ++ L Y   + ++EL   +         V   +        A
Sbjct: 61  VAAVVSLLVLALPV----VVLLSYTTAVGIQELTRVLNAPQIDLTTVEALVQPYVDVSRA 116

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            +     L  P               I+   R A ++        + +  +I   F+  R
Sbjct: 117 VQDPQSLLGQPSVR----------AAINTTLRSAGQYAGFLGTAFVHLFAVITIAFYLLR 166

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL---- 235
           D   +++   S          +  +  +     + F G  + A   G++    + +    
Sbjct: 167 DDTRLAEWFHSRFADSDGV-VRAYTAAIDADFSNIFFGNILFAFITGVIASITFNVLQIV 225

Query: 236 ----AGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIK------GNIFNATCLFLW 284
                 +P    +G++T   ++IP  G  + +  +  +L +       G  F A    + 
Sbjct: 226 FPSSLSIPYPTLMGLLTGAASLIPVVGIKLVWIPLLGWLAVAAARSGGGYGFVAVFGVVA 285

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             +  FI D  +RP++ G    L         V G    G  G+F+GP+++  +    + 
Sbjct: 286 AVVIDFIPDLVVRPYVSGR--DLHLGLVMLAYVFGPLIWGWYGIFLGPMVLVFVVHFARL 343

Query: 345 SIMAI 349
            +  +
Sbjct: 344 VLPEL 348


>gi|237746880|ref|ZP_04577360.1| permease [Oxalobacter formigenes HOxBLS]
 gi|229378231|gb|EEO28322.1| permease [Oxalobacter formigenes HOxBLS]
          Length = 359

 Score = 81.0 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 59/319 (18%), Positives = 123/319 (38%), Gaps = 11/319 (3%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            P ++  I+ +   PI     SK+  +     +IA + VM L I     +  + ++ +  
Sbjct: 33  TPFIAGAILAYALNPIVDWLRSKRIGTLRLPRLIAVIIVMLLLI---AIVTAFALIMIPM 89

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF--I 149
           L+ +  +  +        +++    +           +    KIL+E F+      +  +
Sbjct: 90  LIREWPMLYEQIPAFIAKVNNYLSPILNELGIQIPADNAGIKKILTEQFVPKGDGVWKSL 149

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
              A   G   L +  ++I + + LF+  +D   + ++L  +    +       SR V  
Sbjct: 150 IASAKFGGTAVLTWAWNLILIPVVLFYLLKDWHIMMRKLRDMIPRRWVTRAVSFSREVNS 209

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP---GGAPISFTAVS 266
           ++     G  ++ +           LAG    + +G++T ++A IP       ++    +
Sbjct: 210 MLAQYLRGQLLVMVILSSYYSITLALAGYNVALPVGIMTGMLAFIPYIGICFGLALAITA 269

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTL-RPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
             L   G     T   ++G    F  D  L  P LVG  I+L  L   F L+   +  G 
Sbjct: 270 TLLQFTGMEAWITLGIIYGFGYSF--DGLLMTPKLVGDRIQLHPLIVIFALLAFGQLFGF 327

Query: 326 LGLFIGPVLMALIAVIWKE 344
           +G+ +     A+++V +K 
Sbjct: 328 VGILLALPSSAILSVAYKH 346


>gi|153854815|ref|ZP_01996049.1| hypothetical protein DORLON_02047 [Dorea longicatena DSM 13814]
 gi|149752722|gb|EDM62653.1| hypothetical protein DORLON_02047 [Dorea longicatena DSM 13814]
          Length = 385

 Score = 81.0 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/349 (13%), Positives = 111/349 (31%), Gaps = 13/349 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK--------EESSTFLAVIATVSV 70
           +++ +  F+     P L    I F      +    K         +    +   I+ + V
Sbjct: 30  VVISAFQFVLNIVYPFLLGGAIAFALSVPMNFVERKLFTERKISEKYKRKYARGISLMLV 89

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMWASELWTKHLSH 129
           +      L  + +  + ++    + +  + Q  IP  + W                +L  
Sbjct: 90  IAGVTGILAMIIFGLLPQLAGTFANLGKSIQEFIPQVQGWADHWFHNNKEIMNVVNNLEF 149

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ-- 187
             +  + +      NG   +           +    +     +   +       +  Q  
Sbjct: 150 DWNKIMEAAAGFLKNGAGSVLETTINTAKNIIGAVGTFFIAFVFAVYILLQKEKLRIQAK 209

Query: 188 --LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L +           ++  +  K       G  + A+  G +      L  +P  +  G
Sbjct: 210 KVLFAFVRKGRAEAVLEVLALTYKTFSGFLTGQCVEALILGAMFVITMTLFRLPYALLTG 269

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++ A  A++P        AV  +L+   + F A    +   +   I    + P +VG  +
Sbjct: 270 IVIAFTALVPVFGAFIGCAVGAFLIFMVSPFKALMFIVLFLVLQQIEGNLIYPHVVGNSV 329

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            LP +     +  G   MG++G+ I   LM+++  +++E +      K 
Sbjct: 330 GLPSIWVLAAVSVGGSLMGIVGMLIFIPLMSVVYALFREVVYIKLRQKN 378


>gi|23099624|ref|NP_693090.1| hypothetical protein OB2169 [Oceanobacillus iheyensis HTE831]
 gi|22777854|dbj|BAC14125.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 368

 Score = 81.0 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 61/353 (17%), Positives = 125/353 (35%), Gaps = 14/353 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+   +   ++V++YF   F  P+L A I+     P+     +K         +I   
Sbjct: 11  RAILVIGLTITVIVAIYFSFPFIYPILIAYILASLFQPMVRGIENKLNFPKIPAIIITVT 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + LF   L             L  K+    QH +     + +        ++ +   S
Sbjct: 71  CFLTLFTGALFLAITELYQGTIFLADKIPTHYQHFVLYLENMFNTHILPMYEKVLSYIDS 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD-----------YCLSIIFMIIALFFF 177
             Q  +   + ++ T   D I    + F  + +               +I+F++IA    
Sbjct: 131 LDQGYQETVKNYIAT-LSDLIASGGASFLQVTISNIPMFIAAIPSSVTNIVFILIAACMI 189

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             +   I      +      +   KI+      +   F    I+      ++     +  
Sbjct: 190 SYEMDRIHSFFKEIFPARIQSIQNKIASHFKLAVVGYFRAQLILVFTTACIILIGLLILQ 249

Query: 238 VPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           V   + + +  AI  +IP  G  I F    I+  I GN      L L     + I+ + L
Sbjct: 250 VEHPLTIVLFAAIADIIPYVGTGIIFIPWIIFSFITGNYSLTIGLSLLYGFVV-ILRQIL 308

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            P ++   I +  L    G+  G++ +G +G+F+ P+L+ L   + +  +  +
Sbjct: 309 EPKVLSSSIGIHPLVMLIGMFIGLKVLGFIGIFLSPILLVLFKGLIETGVFHL 361


>gi|295094550|emb|CBK83641.1| Predicted permease [Coprococcus sp. ART55/1]
          Length = 464

 Score = 81.0 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 109/335 (32%), Gaps = 8/335 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEES--STFLAVIATVSVMCLFIVPLLFLFY 83
            L  F      A ++      +       K+         V   +S +C+  V L F   
Sbjct: 41  ILMPFVIGFAIAFVVNVPMKGLEKVLFKNKDSRLYRFRRPVCLILSFLCIIAV-LTFAIT 99

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRW--LSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
             + EM + ++         +   +   +  +       +       +  +L       +
Sbjct: 100 MIIPEMSKTITMFAEKLPSAMDDIQRKAIKLMKDQPEIVDKIKSININWDALISNVVGIV 159

Query: 142 KTNGIDFIPR---FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
           K  G   +      AS      +D  + + F    L         +   L ++       
Sbjct: 160 KNGGSSVLSSTFSIASSVVGAVVDVLVGLFFACYILAQKETLEKQVKGVLYAVFREEKAD 219

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
            + +   +  K       G  + A   GL+      +  +P  + + +I A+ A+IP   
Sbjct: 220 RFIQTCVLADKTFSKFISGQCLEACILGLMFFITMTIFRIPYALTVSIIIAVFALIPVVG 279

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
                     +++  +   A    +   +   I    + P +VGG + LP +     ++ 
Sbjct: 280 AFVGCFAGTIMILVEDPKRAIVFLIIFVVLQQIEGNFIYPHVVGGSVGLPSIWVLVAVML 339

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G   +G+LG+ I   L +++  + +E ++    +K
Sbjct: 340 GGDMLGILGMLIFVPLFSVLYAMSEEYVVKRLRDK 374


>gi|188586396|ref|YP_001917941.1| protein of unknown function UPF0118 [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351083|gb|ACB85353.1| protein of unknown function UPF0118 [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 368

 Score = 81.0 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 65/352 (18%), Positives = 123/352 (34%), Gaps = 30/352 (8%)

Query: 12  MRWMIMFIILVSLYFLKG-----------FFAPVLSALIIGFTSWPIYSSFISKKEESST 60
              +I+ II   LY+L             F  P L A ++ +   P        K     
Sbjct: 17  TSVLIVIIIFAVLYWLLSTAVILRSQIINFLLPFLFAFVVAYILKPAVDYMEENKIPR-- 74

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
                  ++++ L+ +   FL + G      +V++V          P++  DI   +   
Sbjct: 75  ------ILAILILYAIIGSFLVFVGGRAFATIVNEVQKLISI---APQYARDIQFFLMDL 125

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFI--------PRFASRFGMIFLDYCLSIIFMII 172
           ELW +    P  +       +     +                F +    + LS++   I
Sbjct: 126 ELWIERHDLPIMVTETIRENIAEAETELTEYLDRIVDVESLLAFALNIFGHFLSLVAFPI 185

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
            LF+F +D   I + L  L    F   +    R + + I +      II    GL+    
Sbjct: 186 ILFYFLKDTDLIKKNLSFLIPGRFRKRFLFAFRDINRTIGAYIRSQIIICGFIGLLTYLG 245

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
             + GV   + LG+   I  +IP   P      S  + +      A  + +   I   I 
Sbjct: 246 LMILGVDFALVLGIFAGITNIIPYFGPFIGAIPSTVVALLQTPTLAIKVIILITIIQQIE 305

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            + + P + G  + +  L     L+ G +  G+LG+ +   ++A+  V+ + 
Sbjct: 306 SQIVAPQVFGKNLAIHPLAVITVLIAGGQFFGILGMILAVPVLAITRVVVRH 357


>gi|24113821|ref|NP_708331.1| putative permease [Shigella flexneri 2a str. 301]
 gi|30063867|ref|NP_838038.1| putative permease [Shigella flexneri 2a str. 2457T]
 gi|110806423|ref|YP_689943.1| putative permease [Shigella flexneri 5 str. 8401]
 gi|24052909|gb|AAN44038.1| putative permease [Shigella flexneri 2a str. 301]
 gi|30042122|gb|AAP17848.1| putative permease [Shigella flexneri 2a str. 2457T]
 gi|110615971|gb|ABF04638.1| putative permease [Shigella flexneri 5 str. 8401]
 gi|281601894|gb|ADA74878.1| putative permease perM [Shigella flexneri 2002017]
          Length = 353

 Score = 81.0 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 55/347 (15%), Positives = 115/347 (33%), Gaps = 14/347 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +P+ I   +I+      ++F  G  AP+L A+++ +   WP      S       
Sbjct: 10  RRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWP-TVRLQSIGCSRRW 68

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             +++  V V  L ++  + L       +  +     + N+            P  M A 
Sbjct: 69  ATSIVLVVFVGILLLMAFVVLPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPVLMDAG 128

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +     +    +  + ++ +K +    +           L   + ++ + + +FF  +D
Sbjct: 129 IIDAMAENMRSRMLTMGDSVVKISLASLV---------GLLTIAVYLVLVPLMVFFLLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +          ++ + + + I +   G  +  I  G+     + L G+  
Sbjct: 180 KEQMLNAVRRVLPRNRGLAG-QVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V+     +IP  GA +    V  + L   G        F    I   +    L P
Sbjct: 239 SLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L    + L  L     +V      G  G+F    L  LI  +    
Sbjct: 299 VLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAW 345


>gi|331663166|ref|ZP_08364076.1| putative permease [Escherichia coli TA143]
 gi|331058965|gb|EGI30942.1| putative permease [Escherichia coli TA143]
          Length = 181

 Score = 81.0 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 51/141 (36%), Gaps = 1/141 (0%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +
Sbjct: 18  LFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMV 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           FI+P+  L    +     L+ K + +    +P   WL+ IP           +L      
Sbjct: 78  FIIPIALLVNSIVDGSGPLI-KAISSGDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGD 136

Query: 134 KILSETFLKTNGIDFIPRFAS 154
               E+         + R+AS
Sbjct: 137 GDHGESPPLYWHHHHLVRWAS 157


>gi|325917145|ref|ZP_08179375.1| putative permease [Xanthomonas vesicatoria ATCC 35937]
 gi|325536625|gb|EGD08391.1| putative permease [Xanthomonas vesicatoria ATCC 35937]
          Length = 346

 Score = 81.0 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 57/337 (16%), Positives = 102/337 (30%), Gaps = 23/337 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++  + +      L+ L      V  A+++      + S    +   S  +   +  + 
Sbjct: 12  RVIVVLALVACAWMLWTLSDLLLMVFGAIVVAVLLRAVSSWLTRRTRLSDGWALALVVIV 71

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +   F   L         E+  L   +    Q    V  WL+  P G    EL       
Sbjct: 72  LTAGFSALLWLFGSQLASEVGALQRTLP---QAWTRVHDWLAAGPLGPAVEEL------- 121

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF--FFYRDGFSISQQ 187
                        +N       FA        +  L ++  +        YR G  +   
Sbjct: 122 -----TRQAPARVSNLAPRAGAFALSITGGVANLFLVLVGAVYLAAQPHLYRRGALL--- 173

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L      A      +     +R    G  I  +  G + G   W  G+P  +ALG++
Sbjct: 174 ---LLPAHVRATTDDALQASGTALRLWLRGQLIAMVVVGALTGLGLWALGIPGALALGIV 230

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             ++  +P   PI     +I L    +   A        +   I    L P +    + L
Sbjct: 231 AGLLDFVPIVGPILAAIPAILLGFTVSPQMALATAALFVVVQQIEGNLLLPLIQQRTVDL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           P +   F L G    +G  G+ +   L  +  V+ K 
Sbjct: 291 PPVLLLFSLFGIGMLLGPPGVLLAAPLTVVGYVLIKR 327


>gi|319792186|ref|YP_004153826.1| hypothetical protein Varpa_1504 [Variovorax paradoxus EPS]
 gi|315594649|gb|ADU35715.1| protein of unknown function UPF0118 [Variovorax paradoxus EPS]
          Length = 427

 Score = 81.0 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/342 (14%), Positives = 112/342 (32%), Gaps = 20/342 (5%)

Query: 15  MIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +++  +L S++ L+     F P++ +L++ +   P+               A I      
Sbjct: 75  LVVLAVLASVFALQWGQAVFIPLMLSLLLTYALSPLVELLHRWHLPRWIGAAFILVGLFG 134

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW--------LSDIPGGMWASELW 123
            +      +  Y       +LV  + +A Q      R         L  +       E  
Sbjct: 135 GI-----GWTGYSLSGNASQLVDSLPVAAQKLGQAMRRDKGASATPLESVQQAAAQLEKA 189

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +  S   + +      +       +  +     +  L        +    +F    G +
Sbjct: 190 AEENSARVASRRGVARVIIERPGFNVRDYLLSGTVGLLSALGQFTLVAFLTYFALCSGDT 249

Query: 184 ISQQLDSLGEHLFPAYWK--KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             ++L  +             +   + + I    L     ++  GL  G A+W  G+ + 
Sbjct: 250 FRRKLIKITGSSLQKKKVTVHVLDDITRNIERYLLVQIFTSVLVGLATGLAFWAIGLENA 309

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPF 299
              G+I A+  +IP  G+ I   A  +   ++  ++     +         I+   L P+
Sbjct: 310 AVWGIIAAVTNLIPYIGSVIVLAAAGLVAFLQFNSLQMGLAVAGTSLAIHTIIGNLLLPW 369

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           L     ++  +  F G++      G+ GL +G  +  +I  I
Sbjct: 370 LTSRTSRMNPVAVFVGVIFWGWLWGIWGLLLGIPITMVIKSI 411


>gi|288870499|ref|ZP_06114307.2| sporulation integral membrane protein YtvI [Clostridium hathewayi
           DSM 13479]
 gi|288866964|gb|EFC99262.1| sporulation integral membrane protein YtvI [Clostridium hathewayi
           DSM 13479]
          Length = 377

 Score = 81.0 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 58/348 (16%), Positives = 125/348 (35%), Gaps = 20/348 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKG----FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + I+  +I  +++  + F+      FF P +   II   + P+      + +      ++
Sbjct: 11  RLILNIVIPLLVIWLVCFIGPRLLKFFLPFVIGWIIAMIANPLVKFLEKRVKIVRKHSSM 70

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKV--------VLANQHGIPVPRWLSDIPGG 116
           +  V+V+ L I  L F+    + E    V  +        +   +  + V R L  +P G
Sbjct: 71  MIVVAVLALIITLLYFVISKLVSETVGFVGDIPKYYESASIEVQKMLLSVERLLQFLPQG 130

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
              S+   +   H      L+   + +         A           +  I  I + + 
Sbjct: 131 --VSDSVNQFFGHIGEYLNLAVQKIASPT----VTVAGNVVKSIPAALVYTIVTIFSSYL 184

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
           F  +   I              Y+K + + V  ++   FL    I     +VL + + + 
Sbjct: 185 FIVNRDKILDFFKKYMPEGGSKYYKYLRKDVRHLVGGYFLAQFKIMFVVAVVLAAGFLVL 244

Query: 237 GVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
            V   + + VI A +  +P  G        ++  L  G+ + A  +     +   ++ + 
Sbjct: 245 RVDYALLIAVIVAFLDFLPVLGTGTILVPWAVIRLFSGDTYFALWMLALYVLTQ-VLRRV 303

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           + P +VG  + L  L T   L  G +  G+ G+ +   +  L   +++
Sbjct: 304 IEPKIVGDTMGLDPLATLLFLYLGFKFNGIAGMVLAVPIGMLFLNLYE 351


>gi|313650953|gb|EFS15353.1| hypothetical protein SF2457T_0579 [Shigella flexneri 2a str. 2457T]
          Length = 350

 Score = 81.0 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 55/347 (15%), Positives = 115/347 (33%), Gaps = 14/347 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +P+ I   +I+      ++F  G  AP+L A+++ +   WP      S       
Sbjct: 7   RRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWP-TVRLQSIGCSRRW 65

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             +++  V V  L ++  + L       +  +     + N+            P  M A 
Sbjct: 66  ATSIVLVVFVGILLLMAFVVLPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPVLMDAG 125

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +     +    +  + ++ +K +    +           L   + ++ + + +FF  +D
Sbjct: 126 IIDAMAENMRSRMLTMGDSVVKISLASLV---------GLLTIAVYLVLVPLMVFFLLKD 176

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +          ++ + + + I +   G  +  I  G+     + L G+  
Sbjct: 177 KEQMLNAVRRVLPRNRGLAG-QVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNY 235

Query: 241 HVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V+     +IP  GA +    V  + L   G        F    I   +    L P
Sbjct: 236 SLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVP 295

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L    + L  L     +V      G  G+F    L  LI  +    
Sbjct: 296 VLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAW 342


>gi|331648138|ref|ZP_08349228.1| putative permease PerM [Escherichia coli M605]
 gi|331684135|ref|ZP_08384731.1| putative permease PerM [Escherichia coli H299]
 gi|281179544|dbj|BAI55874.1| putative transport protein [Escherichia coli SE15]
 gi|330912263|gb|EGH40773.1| putative permease PerM ( YfgO) [Escherichia coli AA86]
 gi|331042998|gb|EGI15138.1| putative permease PerM [Escherichia coli M605]
 gi|331079087|gb|EGI50289.1| putative permease PerM [Escherichia coli H299]
          Length = 353

 Score = 81.0 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 55/347 (15%), Positives = 115/347 (33%), Gaps = 14/347 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +P+ I   +I+      ++F  G  AP+L A+++ +   WP      S       
Sbjct: 10  RRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWP-TVRLQSIGCSRRW 68

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             +++  V V  L ++  + L       +  +     + N+            P  M A 
Sbjct: 69  ATSIVLVVFVGILLLMAFVVLPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +     +    +  + ++ +K +    +           L   + ++ + + +FF  +D
Sbjct: 129 IIDAMAENMRSRMLTMGDSVVKISLASLV---------GLLTIAVYLVLVPLMVFFLLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +          ++ + + + I +   G  +  I  G+     + L G+  
Sbjct: 180 KEQMLNAVRRVLPRNRGLAG-QVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V+     +IP  GA +    V  + L   G        F    I   +    L P
Sbjct: 239 SLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L    + L  L     +V      G  G+F    L  LI  +    
Sbjct: 299 VLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAW 345


>gi|111017108|ref|YP_700080.1| hypothetical protein RHA1_ro00086 [Rhodococcus jostii RHA1]
 gi|110816638|gb|ABG91922.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 478

 Score = 81.0 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/319 (13%), Positives = 108/319 (33%), Gaps = 15/319 (4%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           +G    +  A  +     P  S  +        + AV        +F++    L  +   
Sbjct: 168 RGVLVLIAVAAFLAIGLEPAVSWLVRH--GFPRWAAVAT------VFVLAFAVLAGFLAA 219

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            +  +V++      +    P +L  +           + LS    L+      L  +   
Sbjct: 220 AIPPMVTQGGALVHN---APDYLGHL----EQRYPVLEELSTRFHLQDELRRALDASNAP 272

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            +       G          + +++   +F  D   I   +  L  +        I   +
Sbjct: 273 MVVGGLVGAGKFVFSAISGTVIVVVLTAYFLADFAHIRSSIYRLAPNSRRPRTILIGDEI 332

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
              +    LG  +I++   ++         VP  + L V+ A++ +IP         V  
Sbjct: 333 FAKVGGYVLGNLLISLITAVLTFVWLVAFDVPYPLLLAVLVAVLDLIPVVGSTLAGVVVA 392

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            + +  ++  +    ++        D  L P ++G  +K+P + T   ++ G   +G++G
Sbjct: 393 LVALTVSLLVSLATIVFFIALRLFEDYLLVPRIIGRTVKVPPMVTVVAVLIGGALLGIVG 452

Query: 328 LFIGPVLMALIAVIWKESI 346
             +   + A + ++ +E++
Sbjct: 453 ALLAIPVAAAVLLLARETV 471


>gi|328554105|gb|AEB24597.1| hypothetical protein BAMTA208_12160 [Bacillus amyloliquefaciens
           TA208]
 gi|328912497|gb|AEB64093.1| UPF0118 membrane protein yueF [Bacillus amyloliquefaciens LL3]
          Length = 356

 Score = 81.0 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/311 (14%), Positives = 112/311 (36%), Gaps = 10/311 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P++ + ++ +   PI      K +       +        LF++ L         +  
Sbjct: 41  FPPIVLSGVLYYLCRPIVRVLHEKVKLPEGIAILAIYAGTAGLFVLFLYTAGPAVQKQFA 100

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
                +   +        W+  +         W   + H  S K  ++     +G   I 
Sbjct: 101 AFTDHIPELS---AKAENWIRHL-----QDSKWFSRIQHEDSFKKAADKAANYSGS--IA 150

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              S       +  ++   +  AL++  ++G    ++L  L         K+I + + + 
Sbjct: 151 DSLSSLAGAAANAAITAAIIPFALYYMLKEGNKAPRRLLRLLPEKHQKEGKQILQDMDEA 210

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G  +++   G+++ + Y++ G+   + LG    +  +IP   P   T   + + 
Sbjct: 211 LSSYIQGQLLVSFCVGVLVTTGYFIIGLDYPLVLGAFAMVTNLIPFIGPWIGTFPGVIVG 270

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +  +   A  + +   I   +  + + P ++G  + +  L   F L+   +  G+ G+ +
Sbjct: 271 LFDSPTRAVLVVIVVVIVQQLESQLISPQIMGRKLDIHPLTIIFLLLAAGKFSGIAGMLL 330

Query: 331 GPVLMALIAVI 341
                A+  VI
Sbjct: 331 AIPGYAVAKVI 341


>gi|325290064|ref|YP_004266245.1| protein of unknown function UPF0118 [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324965465|gb|ADY56244.1| protein of unknown function UPF0118 [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 349

 Score = 81.0 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/306 (16%), Positives = 113/306 (36%), Gaps = 9/306 (2%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P +  L++ +   P+     +KK      +A++            ++F  +   + +  L
Sbjct: 31  PFILGLVLAYLLNPLVCWLEAKKIGRKYAIALVFIAI--------IVFFAFVFFVLLPAL 82

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
             ++   +     +   L      +  S L          L      + +     ++  F
Sbjct: 83  YLELSRLSAMLPKMMDNLFKYMESIKLSFLQAGLPGEVIKLYDEKIIYAQGFATRWLVNF 142

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
            +    I +     ++   +   +F  D   ++Q +  L    +   W+ + + +  +I 
Sbjct: 143 LNDIPGILVSLT-YLVLSPVLAIYFLADWRRMTQTMIWLVPRKYRNSWRHLLKEINLIIV 201

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
           +   G  I A+  G+++G    L G    + +G+I  I  +IP   P+     S+ L + 
Sbjct: 202 NYIHGNLIDAVLVGVIIGIGAALLGTEYALLIGIICGITNIIPYFGPLIGAVPSLMLALS 261

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
            +   A  + +   I   I    + P L+   + L  L   F L+ G +  GLLG+ +  
Sbjct: 262 NSPIMAVKILVLILIVQQIDGNLINPKLMSDKVGLRPLTVVFSLLAGEKLAGLLGMLVAI 321

Query: 333 VLMALI 338
            L A++
Sbjct: 322 PLTAIM 327


>gi|308048984|ref|YP_003912550.1| hypothetical protein Fbal_1267 [Ferrimonas balearica DSM 9799]
 gi|307631174|gb|ADN75476.1| protein of unknown function UPF0118 [Ferrimonas balearica DSM 9799]
          Length = 355

 Score = 81.0 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/346 (13%), Positives = 106/346 (30%), Gaps = 12/346 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           RE   +PQ +   +I+ +    +YF      P+L A++  +           +    +  
Sbjct: 10  REKFSDPQAVTLAVILLVGFAVIYFYGSLIMPLLVAVVFAYMLESPVGWMTRQGIPRTLS 69

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            +++  +    + +     L              V LA +    V +W + I        
Sbjct: 70  ASLVLVLFAGLMLVATFGLLPAL-------WRQGVALATELPSMVSQWQNLIMTLPEQYP 122

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                      +   + + L T     +   +    +  +   +  I + + +FFF +D 
Sbjct: 123 TLIDEHQLASLMANFNNSLLST--GQNLVSQSLSSLVDLVALMVYAILVPLLMFFFLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +                K++   +   I +   G  I  +  G      ++   +   
Sbjct: 181 DELMSSFGRFIPD-NRDLAKQVWGEMNVQIGNYIRGKVIEILIIGTASYLTFFFMDLRYA 239

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPF 299
             LG +  +  +IP  GA +    V++    +  I       +     +  +D   L P 
Sbjct: 240 ALLGALVGLSVLIPYIGATVVTVPVALVGFFQWGISPEFGYLMLAYGIIQAIDGNVLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           L    + L  +     ++      G  G+F    L  L+  +    
Sbjct: 300 LFSEAVNLHPVAIIVAVLIFGGLWGFWGVFFAIPLATLVKAVVNAW 345


>gi|229827713|ref|ZP_04453782.1| hypothetical protein GCWU000182_03102 [Abiotrophia defectiva ATCC
           49176]
 gi|229787912|gb|EEP24026.1| hypothetical protein GCWU000182_03102 [Abiotrophia defectiva ATCC
           49176]
          Length = 385

 Score = 81.0 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/345 (13%), Positives = 112/345 (32%), Gaps = 18/345 (5%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSF-------ISKKEESSTFLAVIATVSVMCLFIVPL 78
            +    +P+++ LII +   P  +         I  +          A V +  + I+ +
Sbjct: 41  VVYKILSPLVTGLIIAYIIDPFVTFLKKTVFADIKNENTKKKLSVTTALVGIAIIIILLM 100

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + L    ++ ++  V  +    +        L                            
Sbjct: 101 VALIPQIIVSIQTFVKNINTYVES-------LQHFLKTASVEAAKRNIDISGLIRFGDDT 153

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             +    I           +        +   +    ++  D   +      L + +   
Sbjct: 154 LSMIGRKIPENFNGILNTSISISKAIFDLFIAMFLAIYYLADKDRLKGSFSRLLKRIIKE 213

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA----YWLAGVPSHVALGVITAIMAMI 254
              K      +   S  +      I +G+++G A      +AG+P  V + ++  +  + 
Sbjct: 214 DKYKAFAGFWERCNSILIRYIAFDIIDGIIVGVANFIFMSIAGIPYSVLISLVVGVTNLA 273

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P   PI    +  ++L+  N  +A    ++  I   I    L+P L GG + +P +    
Sbjct: 274 PTFGPIVGAIIGGFVLVLVNPLHALWFIIFTIILQTIDGYVLKPKLFGGSLGVPGVWILI 333

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            ++ G R +G+ G+ +     A++  I+ + I      +E++   
Sbjct: 334 SIIVGSRILGVTGILLAIPFAAIVDFIYHDLIFQGARKREELEKQ 378


>gi|15832609|ref|NP_311382.1| permease [Escherichia coli O157:H7 str. Sakai]
 gi|16130418|ref|NP_416988.1| predicted inner membrane permease, UPF0118 family [Escherichia coli
           str. K-12 substr. MG1655]
 gi|74313019|ref|YP_311438.1| putative permease [Shigella sonnei Ss046]
 gi|82544940|ref|YP_408887.1| permease [Shigella boydii Sb227]
 gi|82777872|ref|YP_404221.1| putative permease [Shigella dysenteriae Sd197]
 gi|89109299|ref|AP_003079.1| predicted inner membrane protein [Escherichia coli str. K-12
           substr. W3110]
 gi|157157181|ref|YP_001463815.1| PerM family permease [Escherichia coli E24377A]
 gi|157161953|ref|YP_001459271.1| PerM family permease [Escherichia coli HS]
 gi|168748451|ref|ZP_02773473.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4113]
 gi|168756262|ref|ZP_02781269.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4401]
 gi|168761099|ref|ZP_02786106.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768582|ref|ZP_02793589.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773596|ref|ZP_02798603.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778456|ref|ZP_02803463.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4076]
 gi|168787836|ref|ZP_02812843.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC869]
 gi|168798861|ref|ZP_02823868.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC508]
 gi|170019223|ref|YP_001724177.1| hypothetical protein EcolC_1183 [Escherichia coli ATCC 8739]
 gi|170082103|ref|YP_001731423.1| inner membrane protein [Escherichia coli str. K-12 substr. DH10B]
 gi|170684284|ref|YP_001744676.1| PerM family permease [Escherichia coli SMS-3-5]
 gi|187731235|ref|YP_001881284.1| putative permease, PerM family [Shigella boydii CDC 3083-94]
 gi|188494088|ref|ZP_03001358.1| putative permease, PerM family [Escherichia coli 53638]
 gi|191169210|ref|ZP_03030965.1| putative permease, PerM family [Escherichia coli B7A]
 gi|193064715|ref|ZP_03045793.1| putative permease, PerM family [Escherichia coli E22]
 gi|193068364|ref|ZP_03049327.1| putative permease, PerM family [Escherichia coli E110019]
 gi|194427318|ref|ZP_03059868.1| putative permease, PerM family [Escherichia coli B171]
 gi|194432082|ref|ZP_03064371.1| putative permease, PerM family [Shigella dysenteriae 1012]
 gi|194437683|ref|ZP_03069779.1| putative permease, PerM family [Escherichia coli 101-1]
 gi|195936636|ref|ZP_03082018.1| inner membrane protein [Escherichia coli O157:H7 str. EC4024]
 gi|208807106|ref|ZP_03249443.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813929|ref|ZP_03255258.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4045]
 gi|208818576|ref|ZP_03258896.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4042]
 gi|209395768|ref|YP_002271962.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4115]
 gi|209919969|ref|YP_002294053.1| putative transport protein [Escherichia coli SE11]
 gi|217327918|ref|ZP_03444001.1| permease, PerM family [Escherichia coli O157:H7 str. TW14588]
 gi|218555018|ref|YP_002387931.1| putative permease [Escherichia coli IAI1]
 gi|218696120|ref|YP_002403787.1| putative permease [Escherichia coli 55989]
 gi|218700950|ref|YP_002408579.1| putative permease [Escherichia coli IAI39]
 gi|218705992|ref|YP_002413511.1| putative permease [Escherichia coli UMN026]
 gi|238901658|ref|YP_002927454.1| putative inner membrane protein [Escherichia coli BW2952]
 gi|253772615|ref|YP_003035446.1| hypothetical protein ECBD_1195 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162467|ref|YP_003045575.1| putative inner membrane protein [Escherichia coli B str. REL606]
 gi|254794438|ref|YP_003079275.1| putative inner membrane protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|256017359|ref|ZP_05431224.1| predicted inner membrane protein [Shigella sp. D9]
 gi|256021821|ref|ZP_05435686.1| predicted inner membrane protein [Escherichia sp. 4_1_40B]
 gi|260845123|ref|YP_003222901.1| putative inner membrane protein [Escherichia coli O103:H2 str.
           12009]
 gi|260856587|ref|YP_003230478.1| putative inner membrane protein [Escherichia coli O26:H11 str.
           11368]
 gi|260869182|ref|YP_003235584.1| putative inner membrane protein [Escherichia coli O111:H- str.
           11128]
 gi|261223074|ref|ZP_05937355.1| predicted inner membrane protein [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261259374|ref|ZP_05951907.1| putative inner membrane protein [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291283713|ref|YP_003500531.1| putative permease perM [Escherichia coli O55:H7 str. CB9615]
 gi|293405929|ref|ZP_06649921.1| permease PerM [Escherichia coli FVEC1412]
 gi|293410888|ref|ZP_06654464.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293415756|ref|ZP_06658399.1| permease PerM [Escherichia coli B185]
 gi|293446846|ref|ZP_06663268.1| permease [Escherichia coli B088]
 gi|298381677|ref|ZP_06991276.1| permease [Escherichia coli FVEC1302]
 gi|300820841|ref|ZP_07100991.1| hypothetical protein HMPREF9346_00654 [Escherichia coli MS 119-7]
 gi|300897626|ref|ZP_07116031.1| hypothetical protein HMPREF9552_01838 [Escherichia coli MS 198-1]
 gi|300921425|ref|ZP_07137785.1| hypothetical protein HMPREF9540_05041 [Escherichia coli MS 115-1]
 gi|300922199|ref|ZP_07138335.1| hypothetical protein HMPREF9548_00476 [Escherichia coli MS 182-1]
 gi|300930130|ref|ZP_07145552.1| hypothetical protein HMPREF9550_02421 [Escherichia coli MS 187-1]
 gi|300940265|ref|ZP_07154862.1| hypothetical protein HMPREF9530_05022 [Escherichia coli MS 21-1]
 gi|300951805|ref|ZP_07165619.1| hypothetical protein HMPREF9541_05109 [Escherichia coli MS 116-1]
 gi|300958880|ref|ZP_07170986.1| hypothetical protein HMPREF9547_04570 [Escherichia coli MS 175-1]
 gi|301023878|ref|ZP_07187609.1| hypothetical protein HMPREF9551_02146 [Escherichia coli MS 196-1]
 gi|301024715|ref|ZP_07188358.1| hypothetical protein HMPREF9534_04007 [Escherichia coli MS 69-1]
 gi|301329015|ref|ZP_07222042.1| hypothetical protein HMPREF9535_03707 [Escherichia coli MS 78-1]
 gi|301644483|ref|ZP_07244480.1| hypothetical protein HMPREF9543_01134 [Escherichia coli MS 146-1]
 gi|307139127|ref|ZP_07498483.1| putative permease perM [Escherichia coli H736]
 gi|307312513|ref|ZP_07592146.1| protein of unknown function UPF0118 [Escherichia coli W]
 gi|309784770|ref|ZP_07679403.1| conserved hypothetical protein [Shigella dysenteriae 1617]
 gi|309794463|ref|ZP_07688886.1| hypothetical protein HMPREF9348_01654 [Escherichia coli MS 145-7]
 gi|312973269|ref|ZP_07787441.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|331643110|ref|ZP_08344245.1| putative permease PerM [Escherichia coli H736]
 gi|331653918|ref|ZP_08354919.1| putative permease PerM [Escherichia coli M718]
 gi|331669235|ref|ZP_08370083.1| putative permease PerM [Escherichia coli TA271]
 gi|331678480|ref|ZP_08379155.1| putative permease PerM [Escherichia coli H591]
 gi|84028850|sp|P0AFJ0|PERM_ECO57 RecName: Full=Putative permease perM
 gi|84028929|sp|P0AFI9|PERM_ECOLI RecName: Full=Putative permease perM
 gi|1788838|gb|AAC75546.1| predicted inner membrane permease, UPF0118 family [Escherichia coli
           str. K-12 substr. MG1655]
 gi|1805554|dbj|BAA16382.1| predicted inner membrane protein [Escherichia coli str. K12 substr.
           W3110]
 gi|13362825|dbj|BAB36778.1| putative permease [Escherichia coli O157:H7 str. Sakai]
 gi|73856496|gb|AAZ89203.1| putative permease [Shigella sonnei Ss046]
 gi|81242020|gb|ABB62730.1| putative permease [Shigella dysenteriae Sd197]
 gi|81246351|gb|ABB67059.1| putative permease [Shigella boydii Sb227]
 gi|157067633|gb|ABV06888.1| putative permease, PerM family [Escherichia coli HS]
 gi|157079211|gb|ABV18919.1| putative permease, PerM family [Escherichia coli E24377A]
 gi|169754151|gb|ACA76850.1| protein of unknown function UPF0118 [Escherichia coli ATCC 8739]
 gi|169889938|gb|ACB03645.1| predicted inner membrane protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|170522002|gb|ACB20180.1| putative permease, PerM family [Escherichia coli SMS-3-5]
 gi|187428227|gb|ACD07501.1| putative permease, PerM family [Shigella boydii CDC 3083-94]
 gi|187770714|gb|EDU34558.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017034|gb|EDU55156.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4113]
 gi|188489287|gb|EDU64390.1| putative permease, PerM family [Escherichia coli 53638]
 gi|189003164|gb|EDU72150.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356636|gb|EDU75055.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362303|gb|EDU80722.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4486]
 gi|189368419|gb|EDU86835.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4501]
 gi|189372357|gb|EDU90773.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC869]
 gi|189378577|gb|EDU96993.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC508]
 gi|190900755|gb|EDV60549.1| putative permease, PerM family [Escherichia coli B7A]
 gi|192927598|gb|EDV82214.1| putative permease, PerM family [Escherichia coli E22]
 gi|192958316|gb|EDV88756.1| putative permease, PerM family [Escherichia coli E110019]
 gi|194414639|gb|EDX30911.1| putative permease, PerM family [Escherichia coli B171]
 gi|194419611|gb|EDX35691.1| putative permease, PerM family [Shigella dysenteriae 1012]
 gi|194423489|gb|EDX39480.1| putative permease, PerM family [Escherichia coli 101-1]
 gi|208726907|gb|EDZ76508.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735206|gb|EDZ83893.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4045]
 gi|208738699|gb|EDZ86381.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157168|gb|ACI34601.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4115]
 gi|209763588|gb|ACI80106.1| putative permease [Escherichia coli]
 gi|209763590|gb|ACI80107.1| putative permease [Escherichia coli]
 gi|209763592|gb|ACI80108.1| putative permease [Escherichia coli]
 gi|209763594|gb|ACI80109.1| putative permease [Escherichia coli]
 gi|209763596|gb|ACI80110.1| putative permease [Escherichia coli]
 gi|209913228|dbj|BAG78302.1| putative transport protein [Escherichia coli SE11]
 gi|217320285|gb|EEC28710.1| permease, PerM family [Escherichia coli O157:H7 str. TW14588]
 gi|218352852|emb|CAU98651.1| putative permease [Escherichia coli 55989]
 gi|218361786|emb|CAQ99385.1| putative permease [Escherichia coli IAI1]
 gi|218370936|emb|CAR18757.1| putative permease [Escherichia coli IAI39]
 gi|218433089|emb|CAR13984.1| putative permease [Escherichia coli UMN026]
 gi|238862515|gb|ACR64513.1| predicted inner membrane protein [Escherichia coli BW2952]
 gi|242378091|emb|CAQ32864.1| predicted inner membrane protein [Escherichia coli BL21(DE3)]
 gi|253323659|gb|ACT28261.1| protein of unknown function UPF0118 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974368|gb|ACT40039.1| predicted inner membrane protein [Escherichia coli B str. REL606]
 gi|253978535|gb|ACT44205.1| predicted inner membrane protein [Escherichia coli BL21(DE3)]
 gi|254593838|gb|ACT73199.1| predicted inner membrane protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|257755236|dbj|BAI26738.1| predicted inner membrane protein [Escherichia coli O26:H11 str.
           11368]
 gi|257760270|dbj|BAI31767.1| predicted inner membrane protein [Escherichia coli O103:H2 str.
           12009]
 gi|257765538|dbj|BAI37033.1| predicted inner membrane protein [Escherichia coli O111:H- str.
           11128]
 gi|260448428|gb|ACX38850.1| protein of unknown function UPF0118 [Escherichia coli DH1]
 gi|284922440|emb|CBG35527.1| putative permease [Escherichia coli 042]
 gi|290763586|gb|ADD57547.1| Putative permease perM [Escherichia coli O55:H7 str. CB9615]
 gi|291323676|gb|EFE63104.1| permease [Escherichia coli B088]
 gi|291428137|gb|EFF01164.1| permease PerM [Escherichia coli FVEC1412]
 gi|291433404|gb|EFF06383.1| permease PerM [Escherichia coli B185]
 gi|291471356|gb|EFF13840.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298279119|gb|EFI20633.1| permease [Escherichia coli FVEC1302]
 gi|299880632|gb|EFI88843.1| hypothetical protein HMPREF9551_02146 [Escherichia coli MS 196-1]
 gi|300314482|gb|EFJ64266.1| hypothetical protein HMPREF9547_04570 [Escherichia coli MS 175-1]
 gi|300358626|gb|EFJ74496.1| hypothetical protein HMPREF9552_01838 [Escherichia coli MS 198-1]
 gi|300396446|gb|EFJ79984.1| hypothetical protein HMPREF9534_04007 [Escherichia coli MS 69-1]
 gi|300411659|gb|EFJ94969.1| hypothetical protein HMPREF9540_05041 [Escherichia coli MS 115-1]
 gi|300421438|gb|EFK04749.1| hypothetical protein HMPREF9548_00476 [Escherichia coli MS 182-1]
 gi|300448968|gb|EFK12588.1| hypothetical protein HMPREF9541_05109 [Escherichia coli MS 116-1]
 gi|300454906|gb|EFK18399.1| hypothetical protein HMPREF9530_05022 [Escherichia coli MS 21-1]
 gi|300461974|gb|EFK25467.1| hypothetical protein HMPREF9550_02421 [Escherichia coli MS 187-1]
 gi|300526594|gb|EFK47663.1| hypothetical protein HMPREF9346_00654 [Escherichia coli MS 119-7]
 gi|300844649|gb|EFK72409.1| hypothetical protein HMPREF9535_03707 [Escherichia coli MS 78-1]
 gi|301077228|gb|EFK92034.1| hypothetical protein HMPREF9543_01134 [Escherichia coli MS 146-1]
 gi|306907436|gb|EFN37940.1| protein of unknown function UPF0118 [Escherichia coli W]
 gi|308121919|gb|EFO59181.1| hypothetical protein HMPREF9348_01654 [Escherichia coli MS 145-7]
 gi|308927140|gb|EFP72614.1| conserved hypothetical protein [Shigella dysenteriae 1617]
 gi|309702771|emb|CBJ02102.1| putative permease [Escherichia coli ETEC H10407]
 gi|310331864|gb|EFP99099.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|315061811|gb|ADT76138.1| predicted inner membrane protein [Escherichia coli W]
 gi|315137116|dbj|BAJ44275.1| putative permease perM [Escherichia coli DH1]
 gi|315615736|gb|EFU96368.1| conserved hypothetical protein [Escherichia coli 3431]
 gi|320176259|gb|EFW51320.1| hypothetical protein SDB_01232 [Shigella dysenteriae CDC 74-1112]
 gi|320180479|gb|EFW55410.1| hypothetical protein SGB_02379 [Shigella boydii ATCC 9905]
 gi|320185191|gb|EFW59971.1| hypothetical protein SGF_02727 [Shigella flexneri CDC 796-83]
 gi|320188825|gb|EFW63484.1| hypothetical protein ECoD_03818 [Escherichia coli O157:H7 str.
           EC1212]
 gi|320200054|gb|EFW74643.1| hypothetical protein ECoL_02890 [Escherichia coli EC4100B]
 gi|320640997|gb|EFX10481.1| putative permease perM [Escherichia coli O157:H7 str. G5101]
 gi|320646279|gb|EFX15206.1| putative permease perM [Escherichia coli O157:H- str. 493-89]
 gi|320651784|gb|EFX20164.1| putative permease perM [Escherichia coli O157:H- str. H 2687]
 gi|320657170|gb|EFX24979.1| putative permease perM [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320662776|gb|EFX30108.1| putative permease perM [Escherichia coli O55:H7 str. USDA 5905]
 gi|320667580|gb|EFX34495.1| putative permease perM [Escherichia coli O157:H7 str. LSU-61]
 gi|323156097|gb|EFZ42256.1| hypothetical protein ECEPECA14_1872 [Escherichia coli EPECa14]
 gi|323159346|gb|EFZ45331.1| hypothetical protein ECE128010_4397 [Escherichia coli E128010]
 gi|323169065|gb|EFZ54742.1| hypothetical protein SS53G_0606 [Shigella sonnei 53G]
 gi|323170238|gb|EFZ55891.1| hypothetical protein ECLT68_5126 [Escherichia coli LT-68]
 gi|323177386|gb|EFZ62974.1| hypothetical protein ECOK1180_3872 [Escherichia coli 1180]
 gi|323184449|gb|EFZ69824.1| hypothetical protein ECOK1357_2170 [Escherichia coli 1357]
 gi|323377608|gb|ADX49876.1| protein of unknown function UPF0118 [Escherichia coli KO11]
 gi|323936385|gb|EGB32675.1| hypothetical protein ERCG_02401 [Escherichia coli E1520]
 gi|323944714|gb|EGB40781.1| hypothetical protein EREG_03729 [Escherichia coli H120]
 gi|323961287|gb|EGB56899.1| hypothetical protein ERGG_02238 [Escherichia coli H489]
 gi|323970985|gb|EGB66234.1| hypothetical protein ERHG_02956 [Escherichia coli TA007]
 gi|324020093|gb|EGB89312.1| hypothetical protein HMPREF9542_01215 [Escherichia coli MS 117-3]
 gi|324118163|gb|EGC12060.1| hypothetical protein ERBG_01897 [Escherichia coli E1167]
 gi|326340288|gb|EGD64092.1| hypothetical protein ECF_04004 [Escherichia coli O157:H7 str. 1125]
 gi|326344973|gb|EGD68717.1| permease PerM [Escherichia coli O157:H7 str. 1044]
 gi|331039908|gb|EGI12128.1| putative permease PerM [Escherichia coli H736]
 gi|331048767|gb|EGI20843.1| putative permease PerM [Escherichia coli M718]
 gi|331064429|gb|EGI36340.1| putative permease PerM [Escherichia coli TA271]
 gi|331074940|gb|EGI46260.1| putative permease PerM [Escherichia coli H591]
 gi|332087939|gb|EGI93064.1| hypothetical protein SB521682_2872 [Shigella boydii 5216-82]
 gi|332089723|gb|EGI94824.1| hypothetical protein SD15574_2893 [Shigella dysenteriae 155-74]
 gi|332092738|gb|EGI97807.1| hypothetical protein SB359474_2899 [Shigella boydii 3594-74]
 gi|332100710|gb|EGJ04056.1| PerM family permease [Shigella sp. D9]
          Length = 353

 Score = 81.0 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 55/347 (15%), Positives = 115/347 (33%), Gaps = 14/347 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +P+ I   +I+      ++F  G  AP+L A+++ +   WP      S       
Sbjct: 10  RRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWP-TVRLQSIGCSRRW 68

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             +++  V V  L ++  + L       +  +     + N+            P  M A 
Sbjct: 69  ATSIVLVVFVGILLLMAFVVLPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +     +    +  + ++ +K +    +           L   + ++ + + +FF  +D
Sbjct: 129 IIDAMAENMRSRMLTMGDSVVKISLASLV---------GLLTIAVYLVLVPLMVFFLLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +          ++ + + + I +   G  +  I  G+     + L G+  
Sbjct: 180 KEQMLNAVRRVLPRNRGLAG-QVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V+     +IP  GA +    V  + L   G        F    I   +    L P
Sbjct: 239 SLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L    + L  L     +V      G  G+F    L  LI  +    
Sbjct: 299 VLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAW 345


>gi|326789823|ref|YP_004307644.1| hypothetical protein Clole_0713 [Clostridium lentocellum DSM 5427]
 gi|326540587|gb|ADZ82446.1| protein of unknown function UPF0118 [Clostridium lentocellum DSM
           5427]
          Length = 417

 Score = 81.0 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 57/356 (16%), Positives = 116/356 (32%), Gaps = 27/356 (7%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIY--------SSFISKKEESSTFLAVIATVSVM 71
           IL     +    AP+L  L+I +   PI           F          +  I+ V+V 
Sbjct: 41  ILAFFKGIISIIAPILYGLLIAYLFNPIMIFFENYFIKWFKPSTVNQKKAIRSISIVAVY 100

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLA------------NQHGIPVPRWLSDIPGGMWA 119
              I  ++ +F Y + ++ E +  +  A            N     V + +S +P  +  
Sbjct: 101 ICIIGTVILMFRYLVPQITENIKDLSAALPDYANNLEEKINALEKSVNQSISGLPYQLDT 160

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           S+++T              T    N +  +   A        ++ + ++     L     
Sbjct: 161 SQVFTMIDPA-----KYLNTDFLGNIVSNLMGQAMSIVSSLFNWVMGLVIAFYVLMQKES 215

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
             +   +   +L           +     ++    F+G  I +   G +      +   P
Sbjct: 216 FSYGTKRLCYTLLSRQKADKLIAVFSEGHEIFIKFFVGKFIDSFIIGAICFVGLSILDNP 275

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             + L  I  ++ MIP  G  +      I  L  G    A  + ++  +        L P
Sbjct: 276 YAILLSFIVGVLNMIPYFGPLLGAIPAVIITLFTG-FMPAVVVGIFIFLLQQFDGLVLGP 334

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            ++G  I L       G++ G    G LG+F    ++A++       +  +   K+
Sbjct: 335 KILGDSIGLSPFWIISGILIGGALWGPLGMFFASPIIAVLLKNLNRYMDRVLSQKD 390


>gi|323941248|gb|EGB37433.1| hypothetical protein ERDG_02162 [Escherichia coli E482]
          Length = 353

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 55/347 (15%), Positives = 115/347 (33%), Gaps = 14/347 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +P+ I   +I+      ++F  G  AP+L A+++ +   WP      S       
Sbjct: 10  RRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWP-TVRLQSIGCSRRW 68

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             +++  V V  L ++  + L       +  +     + N+            P  M A 
Sbjct: 69  ATSIVLVVFVGILLLMAFVVLPIAWQQGIYLIRDMPGMLNKLSDFATTLPRRYPALMDAG 128

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +     +    +  + ++ +K +    +           L   + ++ + + +FF  +D
Sbjct: 129 IIDAMAENMRSRMLTMGDSVVKISLASLV---------GLLTIAVYLVLVPLMVFFLLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +          ++ + + + I +   G  +  I  G+     + L G+  
Sbjct: 180 KEQMLNAVRRVLPRNRGLAG-QVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V+     +IP  GA +    V  + L   G        F    I   +    L P
Sbjct: 239 SLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L    + L  L     +V      G  G+F    L  LI  +    
Sbjct: 299 VLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAW 345


>gi|238651085|ref|YP_002916943.1| putative permease PerM-like protein [Rickettsia peacockii str.
           Rustic]
 gi|238625183|gb|ACR47889.1| putative permease PerM-like protein [Rickettsia peacockii str.
           Rustic]
          Length = 351

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 55/350 (15%), Positives = 119/350 (34%), Gaps = 7/350 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N   I   + + + +     +     P   A II +   P      SK + S+ F + I
Sbjct: 1   MNRTAIFWLVFLGLFISGFMLISDAVKPFFIAFIISYLLQPAIGFIASKFKISNKFASSI 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + +F + L  L      ++   ++ +   N +          +P  M        
Sbjct: 61  IYLIFLSIFFLSLTILVPIIYGQIFTFINNIPKYNNYLQAEI-----LPPIMVKIYSIEP 115

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            ++      + +        +  I     R+ +I ++  +  + + I LF+F RD   I 
Sbjct: 116 DIADKIKNSLSNFINSIFTILGSIANNFWRYTIITINIFVLFLLIPIILFYFLRDWAKII 175

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             + SL          +I   +  ++ +   G   I +        A+ + G+   + LG
Sbjct: 176 ANMKSLLPIKTRPKILEILSAINNLLSAYIRGQLNICLLLSTYYSIAFTVIGIDLALLLG 235

Query: 246 VITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           ++T  + +IP           + I  L  G       + +   +          P ++G 
Sbjct: 236 ILTGFLVIIPFLGTFISFLLTLIIGYLTFGVTTKLLYIMIIYLVGNICESYIFTPKIIGD 295

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            I L  L   F +       G++G+F    +  +  ++    I   K +K
Sbjct: 296 KIGLHPLWIIFSIFACGSLFGIIGIFFAIPIAGITKILLLNLIKFYKSSK 345


>gi|57339636|gb|AAW49805.1| hypothetical protein FTT0479 [synthetic construct]
          Length = 403

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 117/356 (32%), Gaps = 6/356 (1%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           N + I+   +M    + L FL  + AP+L+AL+I +    + +      +       V+ 
Sbjct: 42  NNEPIVFVGLMLFFYLVLTFLGDYIAPILAALVIAYLLDTLVNILQKFTKLKRI---VLV 98

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +  +   I  L  +F    + + +L+  V  A+     +   L ++           + 
Sbjct: 99  YIVYILFLIALLSLIFVLLPIIINQLIDFVKQASHILSSLKTSLEELSIKYPTILTEDRI 158

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            S       +    + +N   FI +  +    +     + +  + + +F+F +D   +  
Sbjct: 159 NSIVSWFDSIDWKKISSNVGSFILQNTATTLPVLFSVLIYLFLVPLMVFYFLKDKEKMIN 218

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
              S       A +   + + PK +     G  I  I    +    +    +   V L V
Sbjct: 219 WFKSFLPEENGALYYVWNDLKPK-LADYVRGKAIELIIVSTLTYIGFAYFNLNYAVLLAV 277

Query: 247 ITAIMAMIP-GGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
              +  +IP  G  I    V  + +L  G       + +   +   +    L P L    
Sbjct: 278 GVGLSVIIPYVGMVIITIPVIMVGILQFGLNGTFVSMLIVFFVIQALDGNLLVPLLFSEV 337

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           + +  +     ++      GL G+F    L  L           +   K +   N 
Sbjct: 338 LDMHPVGVVSAILIFGGIWGLWGIFFAIPLGLLFISGVNMFRNHLNGKKTQADINL 393


>gi|306833392|ref|ZP_07466519.1| probable permease [Streptococcus bovis ATCC 700338]
 gi|304424162|gb|EFM27301.1| probable permease [Streptococcus bovis ATCC 700338]
          Length = 372

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/331 (14%), Positives = 122/331 (36%), Gaps = 12/331 (3%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV---IATVSVMCLFIVPLLFLFYYG 85
            F      A I+      +Y    ++  ++   L     I+ +     FI+ + +LF   
Sbjct: 41  PFLIGAGIAYIVNIVMS-LYEMLYTRVIKNRILLKAKRAISMILAYLTFILLISWLFSIV 99

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++   ++ ++  +  G  V  ++ ++     A++    +  +   +      + +   
Sbjct: 100 LPDLISSINSLLKIDTTG--VANFIKEV-SDNKATKELLDYFGNSSDITSTFSEYSQQIL 156

Query: 146 IDFIPRFASRFGMI--FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
              +         +       L++   ++   +       + +Q + L +     Y +K+
Sbjct: 157 NQVLSVLTGLLTSVSTIASTVLTVFVSLVFSIYVLASKEQLGRQFNLLIDTYLGTYAEKV 216

Query: 204 ---SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
                I+       F+G T+ A+  G +  +  +L   P    +G++ A  A+IP     
Sbjct: 217 HYVLDILHLRFHGFFVGQTLEAMILGSLTAAGMFLFSFPYAATIGILVAFTALIPVIGAY 276

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
               +   L+   ++  A    ++  +        + P +VGG I LP +     +  G 
Sbjct: 277 IGATIGFILIATQSVSQAFLFLVYLVVLQQFEGNIIYPRVVGGSIGLPGMWVLMAITIGG 336

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
              G+LG+ +   L A +  I K+++   ++
Sbjct: 337 ALWGILGMLVAVPLAASLYQIIKDNVAKRQQ 367


>gi|239996076|ref|ZP_04716600.1| putative permease [Alteromonas macleodii ATCC 27126]
          Length = 357

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 113/359 (31%), Gaps = 14/359 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +P   M  +++ +    L    G   PVL A +I +   WP+    +     S T
Sbjct: 10  RRKFSDPDAAMLLILILLTTAVLLLWGGLIMPVLVAAVIAYLLDWPVCR--LVNVGVSRT 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              V+  +  + + I+ L+ L      +   L+ +  L  Q       W+  +P      
Sbjct: 68  LACVVVMLGFITITILTLIGLVPIISKQSVNLIQETPLIWQK---AQEWILTLPDKYPDY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
               +     + L        +T         A           + +I + + +FF  +D
Sbjct: 125 VQVYQIHQMMEGLNDKLVEVGETLISASFSNIA-----NLAALLVYVILVPLMVFFMLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                  +  L          ++   +   I +   G  I  I  G V    + L  +  
Sbjct: 180 KLFFLDSISRLLPKERRL-ITQVGHEMNSQIANYIRGKVIEIIIVGAVSCVTFVLMDLRY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTLRP 298
            + LGV+     +IP  GA +    V++  + +  I      L +   I   +    L P
Sbjct: 239 AILLGVLVGFSVLIPYIGAAVVTIPVAVVAMFQWGISPEFWYLMIAYGIIQALDGNLLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
            L    + L  L     ++      G  G+F    L  L+  +            E+  
Sbjct: 299 LLFSEAVSLHPLYIIVAVLVFGGLWGFWGVFFAIPLATLVKAVITAWSSNPVIVPEEAK 357


>gi|67458793|ref|YP_246417.1| permease PerM-like protein [Rickettsia felis URRWXCal2]
 gi|67004326|gb|AAY61252.1| Permease PerM homolog [Rickettsia felis URRWXCal2]
          Length = 351

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 56/352 (15%), Positives = 122/352 (34%), Gaps = 11/352 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N   I   + + + +     +     P   A II +   P      SK + S+ F + I
Sbjct: 1   MNRTAIFWLVFLGLFISGFMLISDAVKPFFIAFIISYLLQPAIGFIASKFKISNKFASSI 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + +F + L  L          +  ++     +      +L         +++++ 
Sbjct: 61  IYLIFLSIFFLSLTILVPI-------IYGQIFTFINNIPKYKNYLQAEILPPIMAKIYSI 113

Query: 126 HLSHPQSLKILSETFLKT--NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                  +K     F+ +    +  I     R+ +I ++  +  + + I LF+F RD   
Sbjct: 114 EPDIADKIKNSLSDFINSIFTILGSIANNFWRYTIITINIFVLFLLIPIILFYFLRDWAK 173

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           I   + SL          +I   +  ++ +   G   I +        A+ + G+   + 
Sbjct: 174 IIANMKSLLPIKTRPKTLEILSAINNLLSAYIRGQLNICLLLSTYYSIAFTVIGIDLALL 233

Query: 244 LGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           LG++T  + +IP           + I  L  G       + +   +        L P ++
Sbjct: 234 LGILTGFLVIIPFLGTFISFLLTLIIGYLNFGVTSKLLYIMIIYLVGNICESYILTPKII 293

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G  I L  L   F +       G++G+F    +  +  ++    I   K +K
Sbjct: 294 GDKIGLHPLWIIFSIFACGSLFGIIGIFFAIPIAGITKILLLNLIKFYKSSK 345


>gi|300903504|ref|ZP_07121429.1| hypothetical protein HMPREF9536_01636 [Escherichia coli MS 84-1]
 gi|301302846|ref|ZP_07208974.1| hypothetical protein HMPREF9347_01424 [Escherichia coli MS 124-1]
 gi|331664050|ref|ZP_08364960.1| putative permease PerM [Escherichia coli TA143]
 gi|300404536|gb|EFJ88074.1| hypothetical protein HMPREF9536_01636 [Escherichia coli MS 84-1]
 gi|300841781|gb|EFK69541.1| hypothetical protein HMPREF9347_01424 [Escherichia coli MS 124-1]
 gi|315256510|gb|EFU36478.1| permease, PerM family [Escherichia coli MS 85-1]
 gi|331059849|gb|EGI31826.1| putative permease PerM [Escherichia coli TA143]
          Length = 353

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 55/347 (15%), Positives = 115/347 (33%), Gaps = 14/347 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +P+ I   +I+      ++F  G  AP+L A+++ +   WP      S       
Sbjct: 10  RRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWP-TVRLQSIGCSRRW 68

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             +++  V V  L ++  + L       +  +     + N+            P  M A 
Sbjct: 69  ATSIVLVVFVGILLLMAFVVLPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +     +    +  + ++ +K +    +           L   + ++ + + +FF  +D
Sbjct: 129 IIDAMAENMRSRMLTMGDSVVKISLASLV---------GLLTIAVYLVLVPLMVFFLLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +          ++ + + + I +   G  +  I  G+     + L G+  
Sbjct: 180 KEQMLNAVRRVLPRNRGLAG-QVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V+     +IP  GA +    V  + L   G        F    I   +    L P
Sbjct: 239 SLLLAVLVGFSVLIPYIGAFVVTIPVIGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L    + L  L     +V      G  G+F    L  LI  +    
Sbjct: 299 VLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAW 345


>gi|152965066|ref|YP_001360850.1| hypothetical protein Krad_1098 [Kineococcus radiotolerans SRS30216]
 gi|151359583|gb|ABS02586.1| protein of unknown function UPF0118 [Kineococcus radiotolerans
           SRS30216]
          Length = 396

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 70/197 (35%), Gaps = 1/197 (0%)

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           ++  D I   A+                + A FF+  +G  I   L  L           
Sbjct: 149 SDNRDAIVAGATTVAATAGHLVAGFFITLFATFFYLLEGRRIWSWLLHLMPQPARDPLDD 208

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
            +R     +        ++A+ +G  +     +  VP  V LG++  + A IP  GA +S
Sbjct: 209 AARQSWLTLVHYMRATVVVALVDGAGVAIGAAVLQVPLAVPLGLVVFLGAFIPIVGALLS 268

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
                +  L+      A  +     +   +    L+PFL+G  + +  L     +  G  
Sbjct: 269 GVVAVLVALVAQGPVIALIMLGVILLVQQVESHLLQPFLMGRAVAVHPLAVILSVAAGAT 328

Query: 322 TMGLLGLFIGPVLMALI 338
             G++G      L+A++
Sbjct: 329 VFGIVGALFAVPLVAVL 345


>gi|134299818|ref|YP_001113314.1| hypothetical protein Dred_1971 [Desulfotomaculum reducens MI-1]
 gi|134052518|gb|ABO50489.1| protein of unknown function UPF0118 [Desulfotomaculum reducens
           MI-1]
          Length = 362

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 107/326 (32%), Gaps = 4/326 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+     P + A+ I F   P+     +K   S      ++   ++  F+  +  L    
Sbjct: 38  FIIPLIVPFVLAIFISFLLEPMVYILQNKIHFSRGPAVALSMFLLIIFFVTIISLLLLRL 97

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + E+  L   +    Q           +P            +S+       S      N 
Sbjct: 98  ITELINLSKSIPFIIQEIQYWVE--KSLPKLQQLYGELPPSVSNYIQESFRSIADTLQNL 155

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +                +   II   +A +F  +D  S++          +      + +
Sbjct: 156 LAAALDTLYSTFSAVPGFITIIIVSFLATYFISKDRRSLALHWIKFLPAPYGERSLHVIK 215

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTA 264
            V     S      I+      +  S  ++ G    + +G++     +IP  G       
Sbjct: 216 EVFNAFISYIKAQGILVSISTFISISGLYIIGADYALTMGLLIGFFDIIPVLGPGTVILP 275

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             ++ +I G I     L +   I + +  + L   +V   + L  L T   L  G R +G
Sbjct: 276 WIVWSIISGEIAFGLKLLVLY-IVILVARQLLETKVVADNLGLHPLATLVALFFGFRILG 334

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIK 350
            +G+ +GP+L+  I  I K  I + +
Sbjct: 335 FVGMIVGPILLIAIQAIVKAGIQSPR 360


>gi|219682959|ref|YP_002469342.1| hypothetical protein BLA_0467 [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|219620609|gb|ACL28766.1| putative membrane protein [Bifidobacterium animalis subsp. lactis
           AD011]
          Length = 519

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/319 (13%), Positives = 97/319 (30%), Gaps = 15/319 (4%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           ++ AL +     P+    I          +V     ++ + IV +       + +M  +V
Sbjct: 49  IVIALFLALAVEPLVIRLIRH-GWKRGVASVTCLAGLLVIVIVLMALFGNMFVQQMISMV 107

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             +              +               L     L       +K + +      A
Sbjct: 108 KGLPDLYNQFAAFVDAKTHFK------------LPEMNDLGGEIMKNIKGSWVTDFAGQA 155

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
               M  L   L++   ++  F+    G  + + +           +  +  +V   I  
Sbjct: 156 VSTTMGVLGQILNLTTALMVAFYISIAGPKLRRSVCQWIAPRSQRRFLMVWTVVQDQISG 215

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA-MIP-GGAPISFTAVSIYLLI 271
                +I+A      +     +  VP  + L +   I++  +P  G  I      ++   
Sbjct: 216 FLFSRSILAAINAACMSVFLMIIKVPYWLPLALFCGIVSQFVPTLGTYIGGALPVLFAWG 275

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
           +  I  A  + ++  +   I +  L P +    + L     F  ++      G  G F+ 
Sbjct: 276 ERGIGYAIGVVVFITVYQQIENLVLSPKISERTMDLNPCIAFLTVLFFGSIFGAAGAFLA 335

Query: 332 PVLMALIAVIWKESIMAIK 350
             + A I V+ K ++    
Sbjct: 336 LPITASIQVLLKVAMKRYP 354


>gi|60680148|ref|YP_210292.1| putative transmembrane protein [Bacteroides fragilis NCTC 9343]
 gi|265765290|ref|ZP_06093565.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|60491582|emb|CAH06334.1| putative transmembrane protein [Bacteroides fragilis NCTC 9343]
 gi|263254674|gb|EEZ26108.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 379

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 128/365 (35%), Gaps = 20/365 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFL----KGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M    +     +R  I   ++V L  L     G   P   A +I +  +P+   F  K  
Sbjct: 1   MERKKITFDSFIRGSICCALIVGLLILFKRLSGVLLPFFVAWLIAYMIYPLVKFFQYKLR 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYY-GMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
             S  +++   +  + +  + L +L     + EM  +   +V    +G       S    
Sbjct: 61  FKSRIISIFCALFSITIVGISLFYLLVPPMLAEMGRMNDLLVTYLTNGAY-----SSGTV 115

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGM---IFLDYCLSIIFMII 172
               SE   KH+      +ILSE  +     + +P+  +       I      S I ++ 
Sbjct: 116 PPTLSEFIHKHIDLQALNRILSEENIMNTIKETVPKLWALVAESINILFSVFASFIILLY 175

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
            +F    D  SI++    L    +  +   +   +   +   F G   +A   G++    
Sbjct: 176 VVFILL-DYESIAEGWLHLLPGKYRTFASNLVNDIQDGMNRYFRGQAFVAFCVGILFSIG 234

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI----KGNIFNATC--LFLWGA 286
           + +   P  +ALG+    + M+P    I F    +  ++     G  F        +   
Sbjct: 235 FLIIDFPMAIALGLFIGALNMVPYLQIIGFLPTIVLAILKAADTGENFWVILAGALIVFI 294

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           +   I D  L P ++G    L        L      +G+LG+ I   L  L+   ++  I
Sbjct: 295 VVQAIQDGFLVPRIMGKITGLNPAIILLSLSIWGSLLGMLGMIIALPLTTLMLSYYQRFI 354

Query: 347 MAIKE 351
           +  ++
Sbjct: 355 INKEK 359


>gi|222152996|ref|YP_002562173.1| membrane protein [Streptococcus uberis 0140J]
 gi|222113809|emb|CAR41881.1| putative membrane protein [Streptococcus uberis 0140J]
          Length = 374

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/333 (14%), Positives = 118/333 (35%), Gaps = 6/333 (1%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
             F      A I+       Y   +S+    +    +   +S++  +   +  LF+   +
Sbjct: 40  LPFLYGAALAYIVNIVMS-AYEKLLSRFLRGNHLFHLKRAISMILAYFTFIAILFWIVSI 98

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            + +L++ +           + L        A      ++     +      + +     
Sbjct: 99  VIPDLIASINTMMSFDTSSIKELIRDLSHNKALARLINYVGGDAQVTKTISNYSQQLLRQ 158

Query: 148 FIPRFASRFGMIFL--DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI-- 203
           F+    +    + L     +++    +   +   +   + +Q + L +     Y ++I  
Sbjct: 159 FLSVLTNILTSVTLIASAIINVFVAFVFSLYVLGNKEQLCRQGNLLVDTYAGKYAQRIHY 218

Query: 204 -SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
              ++    R  F+  TI A+  G +     +L  +P    +GV+ A  A++P       
Sbjct: 219 LVELLHDRFRGFFVSQTIEAMILGSLTAVGMFLFKLPFAATIGVLVAFTALLPVVGAYIG 278

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             +   L++  ++  A    ++  I        + P +VGG I LP +     +  G   
Sbjct: 279 VTIGFVLIMTQSLSQAIFFVIFLIILQQFEGNLIYPRVVGGSIGLPAMWVLMAITIGASL 338

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            G++G+ I   L A    + +++I   +  ++K
Sbjct: 339 RGVVGMIIAVPLAATCYQMIRDNIEKKQAIQKK 371


>gi|294011289|ref|YP_003544749.1| putative permease [Sphingobium japonicum UT26S]
 gi|292674619|dbj|BAI96137.1| putative permease [Sphingobium japonicum UT26S]
          Length = 384

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/315 (15%), Positives = 115/315 (36%), Gaps = 13/315 (4%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           FF P+ +AL+I     P       +   S    A+ A ++ + +    L+ +        
Sbjct: 42  FFLPLTAALVIAIALVPFLEWMERRSVPSP-LAALTAVIAFLLVANTALVLIVVPAADWF 100

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           + L  ++     +  P+  + S +    +  E      + P +    +      + + F 
Sbjct: 101 RLLPERLPKIQNNLAPLIDFYSQL--QRFVDETVQMLATGPVAAAQTAAVDAPRSLLQFA 158

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ-LDSLGEHLFPAYWKKISRIVP 208
              A           + ++F ++ ++FF      + ++ ++S G         ++ + V 
Sbjct: 159 ATSAPA-------AIIQMVFALLIIYFFLAGWTRLRRRTINSRGSFDGAMAVARVIQNVV 211

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI--SFTAVS 266
               +  L +  I +  GL +  A WL G+PS +  G I A++  +P   P+  +     
Sbjct: 212 DATSAYVLTIATINLCLGLAVAFALWLIGMPSPLMWGGIVALLNFVPYFGPMLAAALLAL 271

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
             L++  +++ A            +    + P ++G  + +  L     L       G  
Sbjct: 272 GGLMVFDDVWRALLPAALQVGFHLVEANVVTPTILGRRLTMNPLLILVSLTFWGWVWGTP 331

Query: 327 GLFIGPVLMALIAVI 341
           G  +G  L+ +I  +
Sbjct: 332 GALLGVPLLIIIQTV 346


>gi|114321629|ref|YP_743312.1| hypothetical protein Mlg_2482 [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228023|gb|ABI57822.1| protein of unknown function UPF0118 [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 359

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/326 (14%), Positives = 106/326 (32%), Gaps = 11/326 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
            APVL++L++ +            +             +V  +F+    FL    ++   
Sbjct: 38  LAPVLASLVLAYLLEGFVRYLERWRVPR--------LAAVTVVFLSFTAFLLALFLVLFP 89

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L  ++V   +    +      +   +          +  + +       L       + 
Sbjct: 90  VLYRQLVQLVEQLPAILARGQALLLQLPEHYPQLFSEAQMREIIDGLRRELIDWAQRVVT 149

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
            F+ +  ++ +   + ++ +   +FFF +D   + Q L             ++ R V   
Sbjct: 150 SFSFQSVVVIVTLLVYMVLVPFMVFFFLKDKRLMLQWLSDHLPRDRGL-ASEVWREVDLQ 208

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
           I +   G  +  I    V    + L G+   + L V+  +  ++P  GA +    V+I  
Sbjct: 209 IGNYVRGKFVEIIIVWAVTFITFSLFGLQFAMLLAVMVGLSVIVPYVGAAVVTLPVAIIA 268

Query: 270 LIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
             +  +       +     +  +D   L P L    + L  +     ++      G  G+
Sbjct: 269 YFQWGVSPEFAWLMVAYFIIQALDGNVLVPLLFSEAVNLHPVAIIVAILVFGGVWGFWGV 328

Query: 329 FIGPVLMALIAVIWKESIMAIKENKE 354
           F    L  LI  + K    A    ++
Sbjct: 329 FFAIPLATLIQAVIKAWPSAASHREQ 354


>gi|13476595|ref|NP_108165.1| putative permease [Mesorhizobium loti MAFF303099]
 gi|14027357|dbj|BAB53626.1| putative permease [Mesorhizobium loti MAFF303099]
          Length = 366

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/316 (14%), Positives = 107/316 (33%), Gaps = 13/316 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           + + LY       P ++ +++ +   P+      +   S     V+  ++ + + ++  +
Sbjct: 7   LALFLYMFSNILLPFVAGMVLAYFLDPVADRL-QRLGLSRFMATVVILITFLIVLVLAFV 65

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            L      +M +   K+             L  +        L  K   +   L+    +
Sbjct: 66  ILIPVLATQMADFAGKLPEYLTR-------LQSLITSFDPKWLEQKFGVNANGLRDGLNS 118

Query: 140 FLKTNGIDFIPRFASRF--GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            L +        F S +  G+  +      +   +  F+   D   +   +DS       
Sbjct: 119 LLTSGFGLLTTVFTSIWSSGVALVSVVSLFVVTPVVAFYMLLDWDRMVAVIDSWVPRDNV 178

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
           A  + I+R +         G   + +  G +  +   L G+   + +G+   +++ IP  
Sbjct: 179 ATVRAIARDINTATAGFVRGQGTLCLVLGAMYATGLTLTGLNFAILIGLFAGLISFIPYV 238

Query: 258 APISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             ++   +++ +       +      + +   I  FI    L+P LVG  + L  +   F
Sbjct: 239 GSLTGLVLAVGVAFVQFWPDWTMIVAVAVVFFIGQFIEGNILQPRLVGKSVGLHPVWLMF 298

Query: 315 GLVGGVRTMGLLGLFI 330
            L       G +GL I
Sbjct: 299 ALFAFGALFGFVGLLI 314


>gi|324008590|gb|EGB77809.1| permease, PerM family [Escherichia coli MS 57-2]
          Length = 353

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 54/347 (15%), Positives = 115/347 (33%), Gaps = 14/347 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +P+ I   +I+      ++F  G  AP+L A+++ +   WP      S       
Sbjct: 10  RRRFSDPEAIALLVILVAGFSIIFFFSGLLAPLLVAIVLAYLLEWP-TVRLQSIGCSRPW 68

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             +++  + V  L ++  + L       +  +     + N+            P  M A 
Sbjct: 69  ATSIVLILFVGILLLMAFVVLPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +     +    +  + ++ +K +    +           L   + ++ + + +FF  +D
Sbjct: 129 IIDAMAENMRSRMLTMGDSVVKISLASLV---------GLLTIAVYLVLVPLMVFFLLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +          ++ + + + I +   G  +  I  G+     + L G+  
Sbjct: 180 KEQMLNAVRRVLPRNRGLAG-QVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V+     +IP  GA +    V  + L   G        F    I   +    L P
Sbjct: 239 SLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L    + L  L     +V      G  G+F    L  LI  +    
Sbjct: 299 VLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAW 345


>gi|15615171|ref|NP_243474.1| hypothetical protein BH2608 [Bacillus halodurans C-125]
 gi|10175229|dbj|BAB06327.1| BH2608 [Bacillus halodurans C-125]
          Length = 352

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 118/333 (35%), Gaps = 2/333 (0%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             + ++  + + I++++ YF+     P+++ALI      P       K +    F  ++ 
Sbjct: 6   TKRNVLIALTILILVIAAYFILPVSLPLVAALITAMILSPAVHYLHVKTKLKRNFSVMVV 65

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
               +CL  +   ++    + +   +V  +                     +        
Sbjct: 66  FTLFVCLIGLCGYYVVTTVITQGVTIVENIPQYINDINRAWLLFQRDLEHRYEDLPPEFV 125

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                 +        +           +        Y ++II  +IALF F  +   + +
Sbjct: 126 YEINLQVTDTLNKLRQDLADRDWIGDITSLVTSVPGYLVTIIVYLIALFLFMLELPRLKE 185

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           ++ S            +S  +  V+        +++I   +V      L      + +  
Sbjct: 186 KVYSYLSEKTQDKVSFMSSRLSYVVSGFIKAQFLVSIIIFVVSLVGLLLIVPEYALLMAF 245

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +  I+  IP  G+       +++ LI GN+   T L +  A  L I+ +T+ P ++G  I
Sbjct: 246 VIWIIDFIPIIGSIAILGPWALFQLIAGNVAVGTQLLIL-AAILLIIRRTVEPKVMGQHI 304

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
            L  L T   +  G+   G++G  +GP+++   
Sbjct: 305 GLSPLATLIAMYIGLMLFGVVGFIVGPLIVIAF 337


>gi|307692769|ref|ZP_07635006.1| hypothetical protein RbacD_07268 [Ruminococcaceae bacterium D16]
          Length = 386

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 58/321 (18%), Positives = 115/321 (35%), Gaps = 6/321 (1%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L    AP ++ALI      P+          S    +++  V +  L    L  L Y   
Sbjct: 39  LLSLLAPFVAALITAAILHPVVRWLRDTLGGSRKLWSLLVLVLLFGLMGAALGGLVYAAG 98

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++  LV        +   + + L  I    W       + +       + E    T   
Sbjct: 99  AQLISLVQSWDDLLANLEGIFQQLEQIFARFWDLVPPALNETVDSVWDSVLEWLKNTLPG 158

Query: 147 DF--IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               +  +A    +    + L++I  I+A +    D   +        +    A+  ++ 
Sbjct: 159 MLEGLVNYAKDKALSLPSFGLALIIYIMASYLLTADYPDLRTAAARRTDRRLLAFLIQVR 218

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
                          ++++G   +L   +++   P  + L ++ A+M  IP  GA     
Sbjct: 219 DTALAAFGGYLKAEFLLSVGVFFILLGGFFIIHQPYGLLLALVLAVMDFIPIIGAGTVMV 278

Query: 264 AVSIYLLIKGNIFNAT-CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             ++  L  GN+  A   + +WG I LF   +   P  VG    L  + +   +  G+R 
Sbjct: 279 PWAVIDLFTGNLGGAIRLMVIWGLIALFR--RVGEPKFVGDQTGLSPILSLVSIYVGMRL 336

Query: 323 MGLLGLFIGPVLMALIAVIWK 343
            G+LG+ +GP ++ +   + K
Sbjct: 337 GGVLGMILGPTVLLIALNLVK 357


>gi|261253578|ref|ZP_05946151.1| permease PerM [Vibrio orientalis CIP 102891]
 gi|260936969|gb|EEX92958.1| permease PerM [Vibrio orientalis CIP 102891]
          Length = 354

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 55/348 (15%), Positives = 124/348 (35%), Gaps = 14/348 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +    I+    +++YF     AP+L A+++ +   WP+    +S+     T   ++
Sbjct: 15  DPHAVSLVAILLFGFITIYFFGNLIAPLLVAIVLAYLLEWPVVQ--LSRVGIPRTLAVIL 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + L IV +  L      ++  L++ +       + +  ++S++P          +
Sbjct: 73  VILGFISLMIVAIFGLVPTIWQQVGNLINDIPTMY---VGLQGFISELPH----RYPELE 125

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +    +SL   ++  +   G   +    +   +      + +I + + +FF  +D   + 
Sbjct: 126 NFQIVESLVTNAKNQVIGMGETVVKGSLASL-VSLATLGVYLILVPLLVFFLLKDKEEMI 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +          K+   + + I +   G  +  +  G V    + +  +   V L 
Sbjct: 185 EMASGMLPR-NRRLANKVWHEMNEQISNYIRGKVMEILIVGSVSYITFAILDLRYAVLLA 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V      +IP  GA      V+I  L   G       L +   I   +    L P L   
Sbjct: 244 VAVGFSVLIPYIGAAAVTVPVAIVGLFQWGLTPQFYWLLIAYGIIQALDGNVLVPVLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            + L  +     ++      G  G+F    L  L+  +W       +E
Sbjct: 304 AVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWNALPSHEEE 351


>gi|77360080|ref|YP_339655.1| permease (PerM) [Pseudoalteromonas haloplanktis TAC125]
 gi|76874991|emb|CAI86212.1| putative permease (PerM family) [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 357

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/348 (14%), Positives = 117/348 (33%), Gaps = 14/348 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +    ++  ++  LYF+     PVL ALII +   WP+    + +         VI
Sbjct: 15  DPHSVTLLFLLLALVALLYFIGSLIVPVLVALIIAYLLDWPVLH--LERFGLRRFTATVI 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +    + +  +L +      +   L  +     + G     +L  +P    +     +
Sbjct: 73  VMLIFTGIMLTLILVIGPVLWQQTSNLFQETPHMVEQG---KSFLLALPAQYPSLITAEQ 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +   +++     F        +   +       + + + +I + + +FF  +D   +S
Sbjct: 130 VQTIVLTVETKVIEF-----GQVVLSVSLTSLKDAVAWLIYLILVPLLVFFMLKDKLELS 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +  L          ++   + + I +   G     +  G V   A+ +  +     LG
Sbjct: 185 HSIAKLIPQQRRLIM-QVWNEMNQQIMNYIRGKVFEILIVGSVSFIAFTVLDLRYAALLG 243

Query: 246 VITAIMAMIPG-GAPISFTA-VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V+     +IP  GA +      ++ L   G       + +   I   +    L P L   
Sbjct: 244 VLVGFSVLIPFVGAALVTIPVAAVALFQFGIETQFWTILIIYGIIQALDGNVLVPLLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            + L  +     ++      G  G+F    L +L+  +        +E
Sbjct: 304 AVDLNPVFIIVAVLFFGGLWGFWGVFFAIPLASLVKALINAWSSTQEE 351


>gi|315635043|ref|ZP_07890324.1| PerM family permease [Aggregatibacter segnis ATCC 33393]
 gi|315476305|gb|EFU67056.1| PerM family permease [Aggregatibacter segnis ATCC 33393]
          Length = 352

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/342 (15%), Positives = 114/342 (33%), Gaps = 13/342 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +PQ +    I+    VS+YF     AP+L A+++ +   WP+      K +      A++
Sbjct: 15  DPQAMGLAAILLFGFVSIYFFSDLIAPLLVAIVLAYLLEWPV-RLLNEKLKCPRLVAAML 73

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
              S + L  V +L L      ++  L+S +            W   +P           
Sbjct: 74  VLGSFISLVFVVVLVLIPNLWAQLANLLSDLPHMFNR---FNEWFLSLPERYPELIDAQT 130

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S   ++K    +  ++     +    +   +    + + ++      FF  +D   + 
Sbjct: 131 VESIFGTVKEKILSLGESALKLSLASIMNLVTLGIYAFLVPLMV-----FFLLKDKRQLI 185

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +             K+   + + I +   G  +  +    V  + +   G+   + L 
Sbjct: 186 DGVSRFLPR-NRTLASKVWVEMQQQIANYIRGKLLEILVVTAVTYAIFLTFGLNYPLLLA 244

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V      ++P  GA +    V +  + + G+      + +   +   +    L PFL   
Sbjct: 245 VAVGFSVLVPYIGAVLVTIPVVLVAIFQFGDTHTFWYILIAFVVSQLLDGNLLVPFLFSE 304

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            + L  L     ++      G  G+F    L  L+  +    
Sbjct: 305 VVNLHPLIIIIAVLIFGGLWGFWGVFFAIPLATLVKAVVNAW 346


>gi|296185457|ref|ZP_06853867.1| membrane protein, putative [Clostridium carboxidivorans P7]
 gi|296050291|gb|EFG89715.1| membrane protein, putative [Clostridium carboxidivorans P7]
          Length = 340

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/311 (16%), Positives = 113/311 (36%), Gaps = 13/311 (4%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           +  + II +T  P  + ++ +      F AV     ++ + +   L +      E   + 
Sbjct: 37  LFISFIIAYTLRP-MNKYMEQNGIRKKFAAVSLICILILITMTIFLLIVPSAFKESLNIS 95

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             +    +    +   L  I        +         +  I        +    I   A
Sbjct: 96  YTIDKIQKIIDNLYLKLKPISNNKTIYAVMNNVSIKINNQLI--------SLFSKIFDSA 147

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
              G       +SI  + I  ++F  DG +I+ +L +          KKIS+ + K++  
Sbjct: 148 LNIGQN----IVSIAVIPIISYYFLADGDNIANKLLNFFPINSRNMVKKISKDIDKILGR 203

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
             +   ++    G+V  +      +   + L ++ A   +IP   P+     +I++ +  
Sbjct: 204 YIVSQLLLCAFIGIVTFAILIFLHIDFPIILSILNAFFNIIPYFGPVFGAVPAIFIALIK 263

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
           +   A  + +W  +   I    L P + G  + +  L     LV G +  G LG+ +   
Sbjct: 264 SPQKAMWVLIWLYLLQQIEGNILSPKITGDSVNMHPLMVIILLVVGGKIAGFLGMILAIP 323

Query: 334 LMALIAVIWKE 344
           +  +I VI+++
Sbjct: 324 VGVMIKVIYED 334


>gi|226355657|ref|YP_002785397.1| hypothetical protein Deide_07790 [Deinococcus deserti VCD115]
 gi|226317647|gb|ACO45643.1| Conserved hypothetical protein; putative membrane protein
           [Deinococcus deserti VCD115]
          Length = 372

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/329 (15%), Positives = 112/329 (34%), Gaps = 19/329 (5%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
              A +I + + P+ +     +         +    V+ +FI               +LV
Sbjct: 45  FAVAFLIAYLTNPLLNWLQRGRVRR-----GLGVFFVLLVFIGIFGLAGMLLATVSGQLV 99

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH-PQSLKILSETFLKTNGIDFIP-- 150
                         + L       W  E     L +  + L   ++ +++  G + +P  
Sbjct: 100 QLFEKLPDLIGTFGQTLDR--WSQWLGERGIGGLDNVRERLIASAQEYVQNIGQNIVPIL 157

Query: 151 RFASRFGMIFLDYCLSII-------FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           + A        +  LSI         +++   +   D   ++  +       +     ++
Sbjct: 158 QNALNSSGTLFNSLLSIGGIFGHVLLILLLSVYLMLDYSRVNSAILHAFPRPWQPRILEL 217

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS-- 261
           S +V   +     G  +IA   G+ +     LAG+PS  A+G +     ++P   PI   
Sbjct: 218 SDLVGTAVGGYVRGQLLIAAFIGVFVWLGLSLAGIPSAAAIGFLAGAFNIVPYLGPIIGA 277

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
             A+ + L +   +     + +  A    I    L P+++     L  +     ++ GV 
Sbjct: 278 TPALLLALTLPNVVLKIILVVVVFAAANQIESNVLSPYILSKTTDLHPITVLMAILVGVA 337

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            MG  G  +    +AL+ ++ ++     +
Sbjct: 338 LMGFAGALLAVPTVALVKLLLQKYYYPSR 366


>gi|34541553|ref|NP_906032.1| hypothetical protein PG1950 [Porphyromonas gingivalis W83]
 gi|34397870|gb|AAQ66931.1| membrane protein, putative [Porphyromonas gingivalis W83]
          Length = 386

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 64/354 (18%), Positives = 125/354 (35%), Gaps = 13/354 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              +     +++  I+  +  L+G   P   + I+ +   P+      +      FL+VI
Sbjct: 13  RTARLFFIILLVGGIMAIVIGLRGILIPFCLSWILAYVLMPLVRFVQYRLHFRFRFLSVI 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  +   I    F     +  ++E VSK +   Q        L  +P      +  ++
Sbjct: 73  TVLVFISALI---FFAILSLVPAVEEEVSKTITLLQQYRIDENLLQMLPA--PIRKFLSE 127

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR--DGFS 183
             S     K +S   L  N  +   +           +  + IF I  L+F +   D   
Sbjct: 128 SGSMNDLFKGISYEKLMENSKEIFGQLNKLVSGTISLFSYTTIFFIGVLYFIFILFDFEK 187

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + +   +L         + I + V K + S F G  +IA+  G++L   Y +   P  V 
Sbjct: 188 LGKGFVNLFPVGHRIRVRSILKEVDKNMNSYFRGQALIALCVGILLSIGYKIIDFPLGVT 247

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLI----KGNIFNATCLFLWGA--IELFIVDKTLR 297
           LG+   ++ +IP    +    +    ++     G  F        G   I   I D  L 
Sbjct: 248 LGLFIGMLNLIPYLQIVGLIPIVFLSVLKAAQTGQNFFVVLALGIGVMMIVQVIQDTILT 307

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           P ++G  + +        +      +G  GLFI   L   +  ++K  ++   +
Sbjct: 308 PNIMGKRMGMSPAMILLSISIWGSLLGFFGLFIALPLTMSLYSVYKRYVIQDPK 361


>gi|260767738|ref|ZP_05876673.1| permease PerM [Vibrio furnissii CIP 102972]
 gi|260617247|gb|EEX42431.1| permease PerM [Vibrio furnissii CIP 102972]
          Length = 357

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 54/354 (15%), Positives = 130/354 (36%), Gaps = 14/354 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +    I+F   +++YF     AP+L A+++ +   WP+    + + + S TF  ++
Sbjct: 15  DPHAVSLVAILFFGFITIYFFGHLIAPLLVAIVLAYLLEWPVVQ--LCRWKISRTFAVIL 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V+ + + +  +  L      ++  L++ +             L D    + + E+   
Sbjct: 73  VIVAFIGVMLFAVFGLVPTIWQQIVNLINDIPNMYTGLQKFIATLPDRYPELASLEIVEP 132

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            +++ ++  +     +    +  +   A+          + +I + + +FF  +D   + 
Sbjct: 133 IMNNAKNKALSMGESVVKGSLASLVSIAT--------LAVYLILVPLLVFFLLKDKQEML 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + +  +          ++   + + I +   G  +  +  G V    + +  +   V L 
Sbjct: 185 RIVRGVLPR-NRKLATEVWHEMNQQISNYIRGKVLEILIVGGVSYVTFAVLELRYSVLLA 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V      +IP  GA +    V+I  L + G       L +   I   +    L P L   
Sbjct: 244 VAVGFSVLIPYIGAAVVTVPVAIVALFQWGVTPEFYYLLIAYGIIQALDGNVLVPVLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
            + L  +     ++      G  G+F    L  L+  +WK      +E  +  +
Sbjct: 304 AVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWKALPSIDEEPPQTSA 357


>gi|239948342|ref|ZP_04700095.1| permease [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239922618|gb|EER22642.1| permease [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 351

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 55/350 (15%), Positives = 119/350 (34%), Gaps = 7/350 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N   I   + + + +     +     P   A II +   P      SK + S  F + I
Sbjct: 1   MNRTAIFWLVFLGLFISGFMLISDAVKPFFIAFIISYLLQPAIGFIASKFKISDKFASSI 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + +F + L  L      ++   ++ +     +          +P  M        
Sbjct: 61  IYLIFLSIFFLSLTILVPIIYRQIFTFINNIPKYKNYLQAEI-----LPPIMAKIYSIEP 115

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            ++      + +        +  I     R+ +I ++  +  + + I LF+F RD   I 
Sbjct: 116 DIADKIKNSLSNFINSIFTILGSIANNFWRYTIITINIFVLFLLIPIILFYFLRDWAKII 175

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             + SL          +I   +  ++ +   G   I +        A+ + G+   + LG
Sbjct: 176 ANMKSLLPIKTRPKILEILSAINNLLSAYIRGQLNICLLLSTYYSIAFTVIGIDLALLLG 235

Query: 246 VITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           ++T  + +IP           + I  L  G       + +   +        L P ++G 
Sbjct: 236 ILTGFLVIIPFIGTFISFLLTLIIGYLTFGMTAKLLYIMIIYLVGNICESYILTPKIIGD 295

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            I L  L   F +       G++G+F    ++ +  ++    I   K +K
Sbjct: 296 KIGLHPLWIIFSIFACGSLFGIIGIFFAIPIVGITKILLLNLIKFYKSSK 345


>gi|168208880|ref|ZP_02634505.1| putative membrane protein [Clostridium perfringens B str. ATCC
           3626]
 gi|170712888|gb|EDT25070.1| putative membrane protein [Clostridium perfringens B str. ATCC
           3626]
          Length = 377

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 46/333 (13%), Positives = 114/333 (34%), Gaps = 8/333 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-------STFLAVIATVSVMC 72
           I+  LY   G   P +  + I F               S        +F   +  +  + 
Sbjct: 31  IMNFLYKFLGIIKPFIWGIAIAFILNIPVKLIEKNLGNSKFFKGMKRSFSITLTFLFFIL 90

Query: 73  LFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              + +LF+    +  +  L++ +    +Q    +     +        +     L +  
Sbjct: 91  AITLFILFVIPQLLSSISTLMNSIPEYLSQFEKFLEVNAINNSQSQVMMQNIINELLNMW 150

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              +   + +    + ++  F        +++ LS+I  I  L         +   + + 
Sbjct: 151 KEILKVTSQIVGTSLGYLLDFTLGITYGVINFFLSLILAIYMLASKEILISQLKLIIYAF 210

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                     ++ ++  ++     LG    A+  G++      +  +P  + + V+  + 
Sbjct: 211 VSKNKADRIIELGKMCNEMFSKFILGQCTEALVIGVLCFIGMIILKMPYALLISVVIGVT 270

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           A+IP       T  S ++++  +   A    ++  +   +    + P +VG  I L  L 
Sbjct: 271 ALIPVFGAFLGTIPSAFIILIMDPIKALWFIIFIIVLQQLEGNLIYPRVVGSSIGLSALW 330

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             F ++ G    G++G+ IG  +  ++  I K 
Sbjct: 331 VMFAMIVGGSLFGIIGMLIGIPIFGVVFKILKR 363


>gi|159900573|ref|YP_001546820.1| hypothetical protein Haur_4060 [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159893612|gb|ABX06692.1| protein of unknown function UPF0118 [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 404

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/369 (11%), Positives = 122/369 (33%), Gaps = 21/369 (5%)

Query: 3   ETMLNPQGIMRWMI-MFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEES 58
           +T+ + + + RW I  F I +  + L        P +  L+  +   P+ +         
Sbjct: 11  KTIPSWRDLARWTITAFAIWLVAWLLWRTGNQLLPFVVGLVFAYLLLPLVNKLERWI--- 67

Query: 59  STFLAVIATVSVMCLFIVP-LLFLFYYGMLEMKELVSKVVLANQHGIPV-----PRWLSD 112
             + A++    V    +   +L++    + ++      +    ++ +        +W   
Sbjct: 68  PRWAAILVVYIVGLGIVTGSILYIVPPAIDQVNGFGKSLPEFYKNTLEPKINEGLKWYRS 127

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
                   ++  +      +LK  +  +++T     +      F    + +    + +  
Sbjct: 128 EVPDEIQEDIDKQVSKGITTLKENATNYVETGVNGILNGLGVIF--QTIIFLAGFLIIPF 185

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
            LF+   D       L  +           +  I  +V  +   G   + +   ++    
Sbjct: 186 WLFYVLLDERKGKAALIRMIPKAVRTDVLTVLSIFDRVFSAYIRGQLTLGLIIAIMSYIG 245

Query: 233 YWLAG------VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
            W+        +P  + L ++     +IP   PI     ++ + +  ++     +     
Sbjct: 246 LWIVDLVMPGEIPYKLLLALVAGFTELIPVIGPIIGAIPAVIVGLTTSLPMGLVVAGLYI 305

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           +   I +  L P ++G  +++        LV      GLLG+ I   + A+    ++   
Sbjct: 306 VIQQIENNFLVPRIIGAIVEIHEAVLMLLLVIAGTVSGLLGVIIFAPMAAVARDSYQYIT 365

Query: 347 MAIKENKEK 355
             +++  + 
Sbjct: 366 GRLRQPNDP 374


>gi|157738009|ref|YP_001490693.1| acid membrane antigen A [Arcobacter butzleri RM4018]
 gi|157699863|gb|ABV68023.1| acid membrane antigen A [Arcobacter butzleri RM4018]
          Length = 348

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 57/349 (16%), Positives = 125/349 (35%), Gaps = 24/349 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + ++   +     F   +  ++++   +  +      K ++       + T+++  LF +
Sbjct: 12  ILLLFFMVELFNPFLKAIFVSVLLTIATSSLTLHLEHKLKKR-IVATSVMTIALAALFFL 70

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
           P+L+          ++  +V++ N   I +               L          L  +
Sbjct: 71  PILYCILSFATFFNQVDQQVLVKNLDEIKL-----------LVHNLSMDFTFLNDFLNNI 119

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           +        +  I   ++  G   + +   II +++  FFF      I+  +  L   + 
Sbjct: 120 TSKIDVGKTVQDIVSISANLGKNSVKFMFDIILILVFFFFFTLYTTQIATFIRDLLP-IK 178

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                 +      V+        + AI EG + G      G    +  GV+    ++IP 
Sbjct: 179 KEDSIILFHESSSVMTVVLYSTLVTAIFEGFLFGFFLTFFGYDG-LLFGVLYGFASLIPV 237

Query: 257 -GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI-VDKTLRPFLVG--------GPIK 306
            G  I +  ++IY     +  NA  + ++  + + I  D  ++P ++          P  
Sbjct: 238 VGGVIMWLPIAIYEASINSFTNALIIAIYSIVVISIIADTFIKPMIINYINKKIIKTPTN 297

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +  L  FF +V G+ T G  G+ IGP +++L   I         + KE 
Sbjct: 298 VNALLIFFSIVAGLSTFGFWGMIIGPAMVSLFISIMNLLKKYSDDFKES 346


>gi|302389699|ref|YP_003825520.1| protein of unknown function UPF0118 [Thermosediminibacter oceani
           DSM 16646]
 gi|302200327|gb|ADL07897.1| protein of unknown function UPF0118 [Thermosediminibacter oceani
           DSM 16646]
          Length = 349

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 52/354 (14%), Positives = 129/354 (36%), Gaps = 28/354 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKG--------FFAPVLSALIIGFTSWPIYSSFI 52
           MR    + +  +  + +F +L+ L  L             P    ++I +T  P+     
Sbjct: 1   MRVKFFHDRIFIYRLFLFTVLILLAILIYRVRNKLSNVLLPFGVGILIAYTLNPVVLFLT 60

Query: 53  SKKEESSTFLAV-----IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
           +K  + +  +A+     + +++V  +++VP++      +++     ++ V    +     
Sbjct: 61  AKGFKRNVAVALIYFILLCSLAVAMIYLVPVIITELNLLIDAVPFYAREVQYFVYEFR-K 119

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
            ++S +P G    E+  +++   +S+ +     L +  + +                 S 
Sbjct: 120 NYMSSLPAG--IQEVIDRNIDQMESILLDLLQNLVSILLGW------------FSGLFSF 165

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           I   I  F+  +D   +   +                R V   +     G   +++  G+
Sbjct: 166 ILGPILGFYILKDLDRLKNSMTRYIPAEHRDRVFHWVRKVDSTLGRYVRGQLTVSLIVGI 225

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
           +   A +  G+   + +G++  I  +IP   P+     ++ + +         + L  A+
Sbjct: 226 LTSLALYSLGIDFALLIGILAGITNIIPYFGPVIGAVPAVAIALLKEPGKVPWVVLAFAL 285

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
              +    + P +VG  + L  +     L+ G    G+ GL +     AL+  I
Sbjct: 286 IQQVESGIISPHIVGENLGLHPITVILSLLIGGTFFGVWGLILAVPATALLKAI 339


>gi|167770880|ref|ZP_02442933.1| hypothetical protein ANACOL_02233 [Anaerotruncus colihominis DSM
           17241]
 gi|167666920|gb|EDS11050.1| hypothetical protein ANACOL_02233 [Anaerotruncus colihominis DSM
           17241]
          Length = 369

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 53/333 (15%), Positives = 115/333 (34%), Gaps = 7/333 (2%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTS----WPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            S+  L  FF  V+ A ++          +++    +    +  +  ++ +S   L +  
Sbjct: 35  ASVRLLMPFFIGVVLAFVLNGVMETFEKHVFADLPRRFPRRAGLVRPLSLISTYLLVLAA 94

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS--ELWTKHLSHPQSLKI 135
           L+ L +  + ++ E    +       +     L+      W    E + +       L  
Sbjct: 95  LVVLGWTVVPQLGESAITLGRNIPAYLNSLAELAARFQHEWVLPPEFYEQLTGWLSGLAD 154

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
               F+    + +   FA+ FG   +   + +I  I  L    +      +   +     
Sbjct: 155 FLLNFI-AEFVPYALNFAASFGGGIVTLVIGVIVSIHVLLTKEQLLSQARRLNRAFLPPK 213

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                   + +     R    G  + A+  G V      +   P  V +GV+  +  +IP
Sbjct: 214 AADSIASAASVAAGTFRRYVSGQALDALIVGAVSVIGLSVLRFPYAVLIGVVMGVTNVIP 273

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P       + +L+  +   A    L+  I   +    + P ++GG + LP L   F 
Sbjct: 274 FFGPFIGAVPGVLILLMADPIKAIWYILFVVIVQQVDGNIIAPKVIGGSVGLPPLWVLFA 333

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           +  G    G+ G+ +G  L A + ++   ++ A
Sbjct: 334 VTVGGNLFGIAGMILGVPLFATVYILLGRAVRA 366


>gi|17232430|ref|NP_488978.1| hypothetical protein alr4938 [Nostoc sp. PCC 7120]
 gi|17134076|dbj|BAB76637.1| alr4938 [Nostoc sp. PCC 7120]
          Length = 379

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/339 (13%), Positives = 115/339 (33%), Gaps = 17/339 (5%)

Query: 13  RWMIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           +W+ +  +++SLY L         + +A+++  T   +   F         +  ++A   
Sbjct: 5   QWIGLIALILSLYILWQIKEVLLLMFAAVVLATTLNRLAKRFQRS-GMKRGWAVMLAVAI 63

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              + +     +      +  EL  +V    +       W++++            ++  
Sbjct: 64  FFAVVVGFFWLIVPPFAEQFNELTYRVPQGFER---FNAWINEL--RTRIPAQLVPYIPD 118

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             SL   ++ F+           +    ++     + ++  ++       D  +  +   
Sbjct: 119 LNSLIQQAQPFINRVLGSSFAIVSGSLEVVLKVLLVLVLTGMLLA-----DPIAYRKVFV 173

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L    +      I       +     G  I     GL+      + GV + +ALGV+  
Sbjct: 174 RLFPSFYRRRVDGILDQCEVSLEGWVTGAVIAMGVVGLMSVVGLSILGVKAALALGVLAG 233

Query: 250 IMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            + +IP  G  +S        L+  + +    + +   I        + P ++   + L 
Sbjct: 234 FLNLIPNLGPTLSVVPAMAIALLD-SPWKVVAVLILYFIIQQAESNFITPIVMAQQVSLL 292

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              T    +  V   G LGLF+  + + ++A IW + ++
Sbjct: 293 PAVTLISQLFFVTFFGFLGLFLA-LPLTVVAKIWVQEVL 330


>gi|113476303|ref|YP_722364.1| hypothetical protein Tery_2702 [Trichodesmium erythraeum IMS101]
 gi|110167351|gb|ABG51891.1| protein of unknown function UPF0118 [Trichodesmium erythraeum
           IMS101]
          Length = 353

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 107/290 (36%), Gaps = 16/290 (5%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
           F+ K         ++  +  + + +V  + L    + ++   + K+          P WL
Sbjct: 55  FLQKHGGKRHRAVILVFLVALVIMLVLGVILIPLLLEQLTGFIEKL----------PSWL 104

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF--IPRFASRFGMIFLDYCLSII 168
                 + + + W      P +L +++    +        I      F +  +     I+
Sbjct: 105 ESGNKQLESFDQWASKYQLPINLTVITNKLTERLSSQLQDITGEIISFVLNMVGRIFDIL 164

Query: 169 FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLV 228
             I+  F+    G  +   + +   +    +   +   + +  ++ FLG  ++A   G+ 
Sbjct: 165 ITIVITFYLMLHGDRLWNGIFNWLPNHLDIH---VRTSLKQNFQNYFLGQAMLACLMGVS 221

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
           +       G P  +  G+   +M ++P G  +  T VS+ L+   N +    + +   + 
Sbjct: 222 MTLGLLFTGTPFGLLFGIGIGLMTLVPFGTALGVTIVSL-LITLENFWLGIKVLIVIVLI 280

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
              ++  + P ++G    L  +     L+ G++  G+LGL I   +   +
Sbjct: 281 EQAIENFVAPRILGSFTGLNPVWIVLSLLVGMQVWGVLGLLIAVPVAGFV 330


>gi|225026409|ref|ZP_03715601.1| hypothetical protein EUBHAL_00658 [Eubacterium hallii DSM 3353]
 gi|224956246|gb|EEG37455.1| hypothetical protein EUBHAL_00658 [Eubacterium hallii DSM 3353]
          Length = 392

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 57/328 (17%), Positives = 130/328 (39%), Gaps = 20/328 (6%)

Query: 33  PVLSALIIGFTS---WPIYSSFISKKEES--------STFLAVIATVSVMCLFIVPLLFL 81
           P++  LI+ F       ++    +K ++          T L++ AT++ + L I  +  +
Sbjct: 58  PIMVGLILAFVLNVPMKMFERLFAKLKKKYPQLKKIPVTSLSLFATLACIVLLIGIVYTM 117

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
           F  G++     +  V + N     +P+WLS +      +   ++ ++     K+L++   
Sbjct: 118 FVPGLVASVRSIYNVFMEN-----MPKWLSWLRSNGMDTAWISREVTSWDFNKLLTQITG 172

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
               +                  ++++   I   +      S+++Q   +          
Sbjct: 173 NVGNVGNALGKVVDATTSAFGVAMNVMMGFIIAIYVLLSKVSLTRQCKKMIYAHLSKNHA 232

Query: 202 K----ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                IS +V +     F G  I A+  GL++  A+ +  +P    + V+TAI++ IP  
Sbjct: 233 DKICYISSLVNETYSKFFSGQCIEAVILGLLIFIAFTVFRLPYANLIAVLTAILSFIPYI 292

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
              +   +   L++  + +      +   +  FI ++ + P +VGG + L  L T    +
Sbjct: 293 GAFASCFIGALLIVMVDPWKGLLSIVVYQVVQFIENQFIYPRVVGGSVGLAPLWTLSAAL 352

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKES 345
            G    G +G+     + A++ V+ K+ 
Sbjct: 353 IGGNLFGAIGMIFAIPVTAVLYVLLKDD 380


>gi|171912266|ref|ZP_02927736.1| conserved hypothetical transmembrane protein [Verrucomicrobium
           spinosum DSM 4136]
          Length = 407

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 48/332 (14%), Positives = 113/332 (34%), Gaps = 17/332 (5%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +++  L    GF  P++ A  +   S+P+    +SK+      +A+  TV  + L + 
Sbjct: 26  VIVVIAGLKAGAGFLVPIVVAFFLSVLSFPLMHWLMSKRLPH--MVALFVTVGAIVLTLG 83

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             ++     + + +  V   V   +  +           G W  E   +      +    
Sbjct: 84  LTVYAGASLLRKFQSEVPGYVHKLKSYVDQT--------GAWLEERGVEGAKDTANQVFD 135

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCL----SIIFMIIALFFFYRDGFSISQQLDSLG 192
             T +       + +  +               S I +++ + F   +    + +   + 
Sbjct: 136 VPTIISLATNQDVVKNVASMVGTTFGTVATWLGSTIIVLVVMMFILMEAPGTTSRASVVE 195

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           +   P     +       I+      T+I+   G+      W   +   +  G++     
Sbjct: 196 QAGGPNLAVLLQSATD--IQKYLGVKTLISAATGVAAFILCWSFNLKYPLLWGILAFAFN 253

Query: 253 MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            IP  G+  +     I  L++  +  A  + +  A+  F +D   +P L+G    +  L 
Sbjct: 254 YIPAVGSTAAGIPAVIEALVQHGVGPAVGVAIGYAVINFCLDSLWQPMLMGRRFGISGLV 313

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               ++      G  G+F+   L  ++ VI +
Sbjct: 314 IVLSVIFWGWLWGPAGMFLAVPLTMMMKVILE 345


>gi|323967937|gb|EGB63349.1| hypothetical protein ERJG_00967 [Escherichia coli M863]
 gi|323977329|gb|EGB72415.1| hypothetical protein ERFG_00851 [Escherichia coli TW10509]
 gi|327252143|gb|EGE63815.1| hypothetical protein ECSTEC7V_2990 [Escherichia coli STEC_7v]
          Length = 353

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 54/347 (15%), Positives = 115/347 (33%), Gaps = 14/347 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +P+ I   +I+      ++F  G  AP+L A+++ +   WP      S       
Sbjct: 10  RRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWP-TVRLQSIGCSRRW 68

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             +++  V V  L ++  + +       +  +     + N+            P  M A 
Sbjct: 69  ATSIVLVVFVGILLLMAFVVMPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +     +    +  + ++ +K +    +           L   + ++ + + +FF  +D
Sbjct: 129 IIDAMAENMRSRMLTMGDSVVKISLASLV---------GLLTIAVYLVLVPLMVFFLLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +          ++ + + + I +   G  +  I  G+     + L G+  
Sbjct: 180 KEQMLNAVRRVLPRNRGLAG-QVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V+     +IP  GA +    V  + L   G        F    I   +    L P
Sbjct: 239 SLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L    + L  L     +V      G  G+F    L  LI  +    
Sbjct: 299 VLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAW 345


>gi|91793005|ref|YP_562656.1| hypothetical protein Sden_1649 [Shewanella denitrificans OS217]
 gi|91715007|gb|ABE54933.1| protein of unknown function UPF0118 [Shewanella denitrificans
           OS217]
          Length = 360

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 108/317 (34%), Gaps = 12/317 (3%)

Query: 45  WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
           WP+    +++   + T  A +  +  + L ++    L      +   L++ +      G+
Sbjct: 54  WPVAQ--VARIGVNRTTGASLVLILFIGLVLLMAFGLVPSLWKQGAALITDLPSMLDKGL 111

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
                 S       + E         +++ +  +  L T  +    R    +    L   
Sbjct: 112 QTVTVYSQQYPQFISQE-------QIEAMILELKKLLDTEHLLDFGRQLLGYSASLLVLM 164

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
           +  I + + +FFF +D   +                +K+   + + I +   G  I  + 
Sbjct: 165 VYAILVPLLVFFFLKDKQELIASSKRFFPS-KRDLARKVWFEMNQQIFNYIRGKVIEIVV 223

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFL 283
            G+     + +  +     LGV+T    +IP  GA +    +++    +    +     +
Sbjct: 224 VGVASYIFFAVMDLRYAALLGVLTGFSVLIPYVGATLVTLPIALVAFFQWGFSSEFGYLM 283

Query: 284 WGAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            G   +  +D   L P L    + L  +     ++      G+ G+F    L +L+  + 
Sbjct: 284 LGYGIIQALDGNVLVPLLFSDAVDLHPVLIIAAVLVFGGLWGVWGVFFAIPLASLVKAVI 343

Query: 343 KESIMAIKENKEKISSN 359
                  ++ + K+ S 
Sbjct: 344 NAWPNDQQQTQPKLDSE 360


>gi|188995746|ref|YP_001929998.1| probable permease [Porphyromonas gingivalis ATCC 33277]
 gi|188595426|dbj|BAG34401.1| probable permease [Porphyromonas gingivalis ATCC 33277]
          Length = 386

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 64/354 (18%), Positives = 125/354 (35%), Gaps = 13/354 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              +     +++  I+  +  L+G   P   + I+ +   P+      +      FL+VI
Sbjct: 13  RTARLFFIILLVGGIMAIVIGLRGILIPFCLSWILAYVLMPLVRFVQYRLHFRFRFLSVI 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  +   I    F     +  ++E VSK +   Q        L  +P      +  ++
Sbjct: 73  TVLVFISALI---FFAILSLVPAVEEEVSKTITLLQQYRIDENLLQMLPA--PIRKFLSE 127

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR--DGFS 183
             S     K +S   L  N  +   +           +  + IF I  L+F +   D   
Sbjct: 128 SGSMNDLFKGISYEKLMENSKEIFGQLNKLVSGTISLFSYTTIFFIGVLYFIFILFDFEK 187

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + +   +L         + I + V K + S F G  +IA+  G++L   Y +   P  V 
Sbjct: 188 LGKGFVNLFPVGHRIRVRSILKEVDKNMNSYFRGQALIALCVGILLSIGYKIIDFPLGVT 247

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLI----KGNIFNATCLFLWGA--IELFIVDKTLR 297
           LG+   ++ +IP    +    +    ++     G  F        G   I   I D  L 
Sbjct: 248 LGLFIGMLNLIPYLQIVGLIPIVFLSVLKAAQTGQNFFVVLALGIGVMMIVQVIQDTILT 307

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           P ++G  + +        +      +G  GLFI   L   +  ++K  ++   +
Sbjct: 308 PNIMGKRMGMSPAMILLSISIWGSLLGFFGLFIALPLTMSLYSVYKRYVIQDPK 361


>gi|26248851|ref|NP_754891.1| putative permease PerM [Escherichia coli CFT073]
 gi|227887521|ref|ZP_04005326.1| permease PerM [Escherichia coli 83972]
 gi|300981820|ref|ZP_07175752.1| permease, PerM family [Escherichia coli MS 45-1]
 gi|301046368|ref|ZP_07193529.1| permease, PerM family [Escherichia coli MS 185-1]
 gi|26109257|gb|AAN81459.1|AE016764_141 Putative permease perM [Escherichia coli CFT073]
 gi|227835871|gb|EEJ46337.1| permease PerM [Escherichia coli 83972]
 gi|300301650|gb|EFJ58035.1| permease, PerM family [Escherichia coli MS 185-1]
 gi|300408897|gb|EFJ92435.1| permease, PerM family [Escherichia coli MS 45-1]
 gi|307554513|gb|ADN47288.1| putative permease [Escherichia coli ABU 83972]
 gi|315292422|gb|EFU51774.1| permease, PerM family [Escherichia coli MS 153-1]
          Length = 353

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 54/347 (15%), Positives = 115/347 (33%), Gaps = 14/347 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +P+ I   +I+      ++F  G  AP+L A+++ +   WP      S       
Sbjct: 10  RRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWP-TVRLQSIGCSRPW 68

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             +++  + V  L ++  + L       +  +     + N+            P  M A 
Sbjct: 69  ATSIVLILFVGILLLMAFVVLPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +     +    +  + ++ +K +    +           L   + ++ + + +FF  +D
Sbjct: 129 IIDAMAENMRSRMLSMGDSVVKISLASLV---------GLLTIAVYLVLVPLMVFFLLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +          ++ + + + I +   G  +  I  G+     + L G+  
Sbjct: 180 KEQMLNAVRRVLPRNRGLAG-QVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V+     +IP  GA +    V  + L   G        F    I   +    L P
Sbjct: 239 SLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L    + L  L     +V      G  G+F    L  LI  +    
Sbjct: 299 VLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAW 345


>gi|329115640|ref|ZP_08244362.1| UPF0118 membrane protein YrrI [Acetobacter pomorum DM001]
 gi|326695068|gb|EGE46787.1| UPF0118 membrane protein YrrI [Acetobacter pomorum DM001]
          Length = 374

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 46/338 (13%), Positives = 106/338 (31%), Gaps = 7/338 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            +I + ++ +      V ++++       +    +        +       +V+C  I  
Sbjct: 42  AVIALVVWLMGDVLMVVFASVLCAVVLHGLSKILVRHLRLPYGWA----LSAVICGLIGS 97

Query: 78  LLFLFY-YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +FL +  G   + E +       Q    +   L   P G          L   Q+    
Sbjct: 98  AVFLVWNSGPAMISEALRLQDALRQQETALRSTLQSTPTGQMILNYLPASLGGHQAGGGD 157

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           + +    +    I    +           +++ ++IA  +F       +     L     
Sbjct: 158 TSSL--ASLGSRIAGSMTGILGSAFGAIGTLLVVLIAGLYFAMSPAVYANGFLRLVPVSK 215

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               + +     + + +   G ++  +  G + G   W  GVP  +ALGV+  +   IP 
Sbjct: 216 RPKVRDLLLRAGQTLWAWVAGQSLDMLVVGTLSGLGLWFIGVPLALALGVLAGLCNFIPY 275

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
              I     ++ L +         + +  ++  F+    L P +    +++P   T    
Sbjct: 276 IGAIMGAVPALLLALSLGTRETIMVAVLYSVIQFLEGNVLAPVIQRHAVQMPPALTVLSQ 335

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                 +G  GL     L A++          + E  +
Sbjct: 336 TLFGAILGFPGLIFASPLTAVLMATLDGLTPKLDEKDQ 373


>gi|266623985|ref|ZP_06116920.1| putative membrane protein [Clostridium hathewayi DSM 13479]
 gi|288864202|gb|EFC96500.1| putative membrane protein [Clostridium hathewayi DSM 13479]
          Length = 410

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 54/352 (15%), Positives = 116/352 (32%), Gaps = 21/352 (5%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE-----------SSTFLAVIATVSV 70
             L    G   PV+   ++ +   PIY+   S  E                    AT   
Sbjct: 38  AGLKAFIGILMPVIYGAVLAYLLLPIYNRTRSLLEGWIAKGIKKEKTIRGLSKAGATAVS 97

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLA-NQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           + +  V +  LF+  + ++   +  +     ++   +  WL  +     + E   K +  
Sbjct: 98  LIVLFVIVAGLFWMVIPQIYTSIMTLQEGLGENINNLALWLQKLLEDNPSLE--QKVIPM 155

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL---SIIFMIIALFFFYRDGFSISQ 186
              +    E +L T+ +  +    S      L   L   +I+  +I + +      ++S 
Sbjct: 156 YDEVTNQLENWLTTSLVPNVSTVISGLSSGLLSVVLALKNILIGVIVMVYLLNIKETLSA 215

Query: 187 QLDSLGEHLFPAYWK----KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           Q   +   + P        +  R V +V      G  + ++  G++         +P  +
Sbjct: 216 QGKKIIYSVLPLRMANQFIEELRFVHRVFGGFITGKLLDSLIIGIICFVCLNWMKMPYVL 275

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            + VI  +  +IP   P      S +L++  +        ++  +        L P ++G
Sbjct: 276 LVSVIVGVTNVIPFFGPFIGAVPSAFLILLVSPMKCLYFLIFIVLLQQFDGNILGPKILG 335

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
               LP     F ++      G +G+ I     A+   +    +      KE
Sbjct: 336 QSTGLPSFWVLFSILLFGGLFGFVGMIIAVPTFAVGYSMLTGLVNRALRKKE 387


>gi|91211813|ref|YP_541799.1| putative permease PerM [Escherichia coli UTI89]
 gi|110642655|ref|YP_670385.1| putative permease PerM [Escherichia coli 536]
 gi|117624677|ref|YP_853590.1| putative permease PerM [Escherichia coli APEC O1]
 gi|191172962|ref|ZP_03034497.1| putative permease, PerM family [Escherichia coli F11]
 gi|218559417|ref|YP_002392330.1| permease [Escherichia coli S88]
 gi|218690608|ref|YP_002398820.1| putative permease [Escherichia coli ED1a]
 gi|237704999|ref|ZP_04535480.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|300997972|ref|ZP_07181903.1| permease, PerM family [Escherichia coli MS 200-1]
 gi|306814441|ref|ZP_07448603.1| putative permease [Escherichia coli NC101]
 gi|331658631|ref|ZP_08359575.1| putative permease PerM [Escherichia coli TA206]
 gi|91073387|gb|ABE08268.1| putative permease PerM [Escherichia coli UTI89]
 gi|110344247|gb|ABG70484.1| putative permease PerM [Escherichia coli 536]
 gi|115513801|gb|ABJ01876.1| putative permease PerM [Escherichia coli APEC O1]
 gi|190906826|gb|EDV66430.1| putative permease, PerM family [Escherichia coli F11]
 gi|218366186|emb|CAR03932.1| putative permease [Escherichia coli S88]
 gi|218428172|emb|CAR09086.2| putative permease [Escherichia coli ED1a]
 gi|222034201|emb|CAP76942.1| permease perM [Escherichia coli LF82]
 gi|226901365|gb|EEH87624.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|294490984|gb|ADE89740.1| putative permease, PerM family [Escherichia coli IHE3034]
 gi|300304073|gb|EFJ58593.1| permease, PerM family [Escherichia coli MS 200-1]
 gi|305851835|gb|EFM52287.1| putative permease [Escherichia coli NC101]
 gi|307625955|gb|ADN70259.1| putative permease [Escherichia coli UM146]
 gi|312947066|gb|ADR27893.1| putative permease [Escherichia coli O83:H1 str. NRG 857C]
 gi|315288094|gb|EFU47494.1| permease, PerM family [Escherichia coli MS 110-3]
 gi|315300458|gb|EFU59688.1| permease, PerM family [Escherichia coli MS 16-3]
 gi|320196325|gb|EFW70949.1| hypothetical protein EcoM_01718 [Escherichia coli WV_060327]
 gi|323188215|gb|EFZ73508.1| hypothetical protein ECRN5871_3547 [Escherichia coli RN587/1]
 gi|323949486|gb|EGB45374.1| hypothetical protein ERKG_04023 [Escherichia coli H252]
 gi|323955730|gb|EGB51488.1| hypothetical protein ERLG_02994 [Escherichia coli H263]
 gi|324011198|gb|EGB80417.1| permease, PerM family [Escherichia coli MS 60-1]
 gi|331054296|gb|EGI26323.1| putative permease PerM [Escherichia coli TA206]
          Length = 353

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 54/347 (15%), Positives = 115/347 (33%), Gaps = 14/347 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +P+ I   +I+      ++F  G  AP+L A+++ +   WP      S       
Sbjct: 10  RRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWP-TVRLQSIGCSRPW 68

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             +++  + V  L ++  + L       +  +     + N+            P  M A 
Sbjct: 69  ATSIVLILFVGILLLMAFVVLPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +     +    +  + ++ +K +    +           L   + ++ + + +FF  +D
Sbjct: 129 IIDAMAENMRSRMLTMGDSVVKISLASLV---------GLLTIAVYLVLVPLMVFFLLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +          ++ + + + I +   G  +  I  G+     + L G+  
Sbjct: 180 KEQMLNAVRRVLPRNRGLAG-QVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V+     +IP  GA +    V  + L   G        F    I   +    L P
Sbjct: 239 SLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L    + L  L     +V      G  G+F    L  LI  +    
Sbjct: 299 VLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAW 345


>gi|257869328|ref|ZP_05648981.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
 gi|257803492|gb|EEV32314.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
          Length = 351

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 62/351 (17%), Positives = 119/351 (33%), Gaps = 24/351 (6%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           RW ++  +   L+ L+     +L   I  +  + +      K   S   L+++  + V+ 
Sbjct: 17  RWTVLIFLCGILFLLRSMMTIILLTFIFTYLIYKLVQLIRKKVNVSIKLLSIVLYLIVVA 76

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           L  + +       + +  +LV  V    Q        L  +   +  S+   K       
Sbjct: 77  LVYLVITKYAPILLNQSAQLVKSVTDFYQKADSNNELLEYLLHLVQTSDYVQKI------ 130

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS---ISQQLD 189
                      NG+  +  +   FG + L   +S +      FFF  D       SQ   
Sbjct: 131 ----------QNGVVVVINYLYNFGELALTVLISFLLS----FFFMIDNKKTVAFSQLFL 176

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                 F      ++R   +   S      +IAI   ++   A  + G P  ++L ++  
Sbjct: 177 QGSASWFFEDVYYLARKFTRAFGSVIETQLLIAIVNTVITVLALAVMGFPQLLSLAMMIF 236

Query: 250 IMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            +++IP    I     ++      G + +   + L       +    L P L+    ++P
Sbjct: 237 FLSLIPVAGVIISCIPLTFIAYTIGGLNDVVYVLLIIIFVHALESYVLNPRLMSHKTEIP 296

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              TF  L  G    G+ GL +G  L   +  + K   +    N  K S +
Sbjct: 297 MFYTFIVLYLGEHLFGIWGLIVGIPLFTFLLDLMKIKQVPSIRNALKKSES 347


>gi|313124985|ref|YP_004035249.1| permease [Halogeometricum borinquense DSM 11551]
 gi|312291350|gb|ADQ65810.1| predicted permease [Halogeometricum borinquense DSM 11551]
          Length = 333

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/330 (13%), Positives = 116/330 (35%), Gaps = 31/330 (9%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + +   + + + L+     V  ++ + +  WP+  + + +   S    + +AT       
Sbjct: 12  LFVLAGVAAAFLLRSVLGTVFFSVTVAYLLWPVRQAVVRR-GWSPRAASGLATAGAFLAV 70

Query: 75  IV---PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
           +    PL  + Y     +  LV  +       +    +   +                  
Sbjct: 71  LAGLTPLAIVVYLRFDSLTTLVGLLPSNLSFELFGMTYALTL------------------ 112

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                    + T  + ++ + A+          + +   +  ++     G    Q   ++
Sbjct: 113 -------AEVTTFTVAYLRQLATVVAAATPVLLVKVTLFVFLVYSLLYHGEDAQQAALAV 165

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               + +  + ++      + + ++     A G  ++    ++  G  + V L  + A++
Sbjct: 166 VPSSYQSAARALNSRARDTLFAIYVLQAATAAGTFVLAVPVFFFLGYDAVVTLATVAAVL 225

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLF-LWGAIELFIVDKTLRPFLVGGPIKLPF 309
             +P  G  +    ++ Y L  G+   A  +  + GA+  ++ D  +RP L      +P 
Sbjct: 226 QFVPIVGPTLLLLGLAAYQLALGHTVQALLVVTVGGALVAWLPDVLIRPPLAKQTADIPG 285

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              F G  GG  T+G +G+  GP+++ L  
Sbjct: 286 SLYFVGFFGGTLTLGAVGIVAGPLVVGLFV 315


>gi|145589942|ref|YP_001156539.1| hypothetical protein Pnuc_1762 [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145048348|gb|ABP34975.1| protein of unknown function UPF0118 [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 329

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 50/313 (15%), Positives = 103/313 (32%), Gaps = 6/313 (1%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P L+A I+ +   P +     ++  S    A ++ +  + +    L         E+ 
Sbjct: 5   FTPFLAAFILAYILRPAFLWLERRRVPSP-LAAGLSIIFGLGIVGAILSLFIGLLKTEVP 63

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            +  ++     +      WL      +  +  W    +          +      +    
Sbjct: 64  MIKEQLPTWIANTQ---AWLGPKLADLHINMDWGHLKTLASQKISEHISENADELMSTTL 120

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                 G   +   ++ + ++  +F+   D     Q + +L           ++     +
Sbjct: 121 DTVLMSGSSVITGFVNAVLILFVMFYLLIDWAQFFQYIKNLVPPRAQETIHHLAMHTDGL 180

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY-- 268
           +     GM I+             L G+   VALG+ TA+M +IP         ++I   
Sbjct: 181 LSQYLNGMVIVISIMSAFYSIGLSLIGLKGAVALGIFTALMIVIPYIGITIGFTLAIISA 240

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           LL  G       +     +  F+    L P LVG  I L  +   F L+   +  G  G+
Sbjct: 241 LLQFGPQKELVAVMGLYGLGQFLEGFILTPRLVGERIGLHPVVVLFALLLFGKLFGFFGV 300

Query: 329 FIGPVLMALIAVI 341
            +   + A+  V+
Sbjct: 301 LLALPISAVSLVM 313


>gi|146296898|ref|YP_001180669.1| hypothetical protein Csac_1893 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410474|gb|ABP67478.1| protein of unknown function UPF0118 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 351

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 54/336 (16%), Positives = 119/336 (35%), Gaps = 19/336 (5%)

Query: 14  WMIMFIILVSLYFL-----KGFFAPVLSALIIGFTSWPIYSSFISKKEES--STFLAVIA 66
            +++FI  V  +F+          P + AL + +   P+      K +    S  L+ I 
Sbjct: 15  ILLIFIAFVIYFFINIKTFWPILLPFIIALFLSYLLKPVVDFLEVKIKSRDISILLSFIF 74

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           T S+  L  V  + LF   M ++ + + + +                   +   E+   +
Sbjct: 75  TFSIAILIFVYFIPLFITEMKQLTQNIPEYISVFNKWFKDVDSKLSNKLNIDLEEILRSN 134

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
             + +++               +               L  + + I  F+  +D   I +
Sbjct: 135 SINFEAISKQ------------VLTTLLNILKNLYSNILYYLLIPIISFYILKDWSKIVK 182

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +  +    +      I   + KV+        + AI  G++    + +  V     LG+
Sbjct: 183 WIKWILPEKYRKEGISIFNDINKVLHQYIRAQLLDAIIIGILSFLGFSILSVRYAALLGI 242

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           IT I  +IP   PI  +  ++ + +  +   A  + ++  +   I    + P ++G  + 
Sbjct: 243 ITGIGNLIPYFGPIFSSIPAVVIALSDSYIKAIVVVVFLIVLQQIDSFLISPRIIGSRLG 302

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L  L     L+   +  G + +F    L A+I +I+
Sbjct: 303 LHPLTIIIVLIISNKLFGFISMFFAIPLAAVIKIIF 338


>gi|254519283|ref|ZP_05131339.1| permease [Clostridium sp. 7_2_43FAA]
 gi|226913032|gb|EEH98233.1| permease [Clostridium sp. 7_2_43FAA]
          Length = 343

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 41/311 (13%), Positives = 113/311 (36%), Gaps = 13/311 (4%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           +    I+ +   P+  +   K + S    +    +++    I+    +    + E   + 
Sbjct: 40  IFIGFILAYALKPLRDTISEKFKLSKKISSTSIILTIFLGLILLSYIVIPSIIRESYNIG 99

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             +   +        ++ +I   +  +++ +   S    +      F      + +    
Sbjct: 100 YILDNID-------EYVKNIVYKLNLNDI-SFFESIYNQISEEVNIFFSKVTDNLLENL- 150

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
               M+  +  +S+  + I  ++F  DG  I  +L  +         K++   + KV+  
Sbjct: 151 ----MVCFESLVSLAIVPIVTYYFLVDGDLIYNKLLLILPTEKRIIAKRVISHIDKVLSR 206

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
             +   ++++  G +      +  V   + LG+   I+ ++P   PI     +I++ +  
Sbjct: 207 YIISQLLLSLIIGALTFIVLVIIDVKFALILGIFNGILNIVPYFGPIIGGVPAIFVALME 266

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
           +   A    +   +   I    L P + G    +  +     L+ G +  GL+G+ +   
Sbjct: 267 SPNKALWTLIAIFLIQQIEGNILSPKITGDSTNMHPIIIIILLLVGEKLGGLIGMIVAVP 326

Query: 334 LMALIAVIWKE 344
           +  ++ VI+ +
Sbjct: 327 IGVIVKVIYDD 337


>gi|326795245|ref|YP_004313065.1| hypothetical protein Marme_1981 [Marinomonas mediterranea MMB-1]
 gi|326546009|gb|ADZ91229.1| protein of unknown function UPF0118 [Marinomonas mediterranea
           MMB-1]
          Length = 356

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 50/347 (14%), Positives = 111/347 (31%), Gaps = 12/347 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           ++  + N + ++  +++   ++ L F  G  APVL A+++ F      +    K      
Sbjct: 9   IKRYLSNEEVVVFMLLLTACILVLAFWGGILAPVLIAVVLAFLLQGGVTRL-KKVGLGHN 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               I  V  +    + +  +      +    V+ +             L+       + 
Sbjct: 68  LSVSIVFVLFVSSCSLFIGVMVPIIWRQAVRFVNDLPRMFLDLQIFLEALAKQNSAYVSE 127

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
               + ++   +               ++  F+           + ++ + + +FF  +D
Sbjct: 128 SAIQEVINTVTNEL--------AGLGQWVVSFSLSSIPSLFSLAIYLVLVPLVMFFLLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   L S   H   +  + I+  +   I +   G  I  +  G+V    +W  G+  
Sbjct: 180 QKKIVAYLTSWLPH-ERSMMRNIAHEMNDQIANYVRGKVIEMLVVGVVSYIVFWFLGLRY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTLRP 298
              L ++  +  +IP  GA      V +    +    N    +F    +   +    L P
Sbjct: 239 AELLALLVGLSVLIPYIGAAAVTVPVVLVAFYQHGTSNEFWYVFGAYLVVQALDGNVLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L    + L  L     ++      G  G+F    L  L+  I    
Sbjct: 299 LLFSEAVNLHPLAIIVAVLFFGGIWGFWGIFFAIPLATLVKAIINAW 345


>gi|53711948|ref|YP_097940.1| putative permease [Bacteroides fragilis YCH46]
 gi|52214813|dbj|BAD47406.1| putative permease [Bacteroides fragilis YCH46]
          Length = 379

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 128/365 (35%), Gaps = 20/365 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFL----KGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M    +     +R  I   ++V L  L     G   P   A +I +  +P+   F  K  
Sbjct: 1   MERKKITFDSFIRGSICCALIVGLLILFKRLSGVLLPFFVAWLIAYMIYPLVKFFQYKLR 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYY-GMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
             S  +++   +  + +  + L +L     + EM  +   +V    +G       S    
Sbjct: 61  FKSRIISIFCALFSITVVGISLFYLLVPPMLAEMGRMNDLLVTYLTNGAY-----SSGTV 115

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGM---IFLDYCLSIIFMII 172
               SE   KH+      +ILSE  +     + +P+  +       I      S I ++ 
Sbjct: 116 PPTLSEFIHKHIDLQALNRILSEENIMNTIKETVPKLWALVAESINILFSVFASFIILLY 175

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
            +F    D  SI++    L    +  +   +   +   +   F G   +A   G++    
Sbjct: 176 VVFILL-DYESIAEGWLHLLPGKYRTFASNLVNDIQDGMNRYFRGQAFVAFCVGILFSIG 234

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI----KGNIFNATC--LFLWGA 286
           + +   P  +ALG+    + M+P    I F    +  ++     G  F        +   
Sbjct: 235 FLIIDFPMAIALGLFIGALNMVPYLQIIGFLPTIVLAILKAADTGENFWVILAGALIVFI 294

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           +   I D  L P ++G    L        L      +G+LG+ I   L  L+   ++  I
Sbjct: 295 VVQAIQDGFLVPRIMGKITGLNPAIILLSLSIWGSLLGMLGMIIALPLTTLMLSYYQRFI 354

Query: 347 MAIKE 351
           +  ++
Sbjct: 355 INKEK 359


>gi|315648858|ref|ZP_07901953.1| sporulation integral membrane protein YtvI [Paenibacillus vortex
           V453]
 gi|315275826|gb|EFU39178.1| sporulation integral membrane protein YtvI [Paenibacillus vortex
           V453]
          Length = 343

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 60/339 (17%), Positives = 141/339 (41%), Gaps = 9/339 (2%)

Query: 17  MFIILVSLYFLKGFF---APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           +  I + L+ L G F   AP L A++I     P+    + +   +    A   +   + L
Sbjct: 6   LIFIGLGLFLLYGMFTVGAPFLLAIVIAIALEPLNRLLMKRLRLNRIAAATATSTLFLLL 65

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD-IPGGMWASELWTKHLSHPQS 132
               LL  +  G+    +LV     A Q+      +L   I          +  L+   +
Sbjct: 66  L---LLLAYLIGLQVFNQLVEYWSRAPQYFEGANEFLQHTIIQAQDMLNGISPGLADSLT 122

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             + + +    + ++ +      F     +  ++ I   +A++ F     ++ +++ SL 
Sbjct: 123 EFMSNISSYVQSLVNSVSSTFLSFAKTLPNLFVTFIVFCVAVYLFAFSLDTMRERVLSLF 182

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           +    +   ++   + K I        I+++   ++      + G+   +A+ ++  I+ 
Sbjct: 183 DETSQSQVNEVLLSLKKSIFGFLRAQLILSLFTYVITLLGLLILGINYPLAIALLVTIVD 242

Query: 253 MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++P  G        S+YLL  G++F    L ++  I + ++ + L P ++G  + +  LP
Sbjct: 243 ILPILGVGSVLVPWSVYLLATGDVFTGLGL-IFLFILITVIRRVLEPKVIGDAVGIGALP 301

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
               +  G + +G++G FIGP+++ + + + K  +  IK
Sbjct: 302 ALVSMYVGFKLVGVIGFFIGPLVVIIYSAMRKAGLFQIK 340


>gi|313610346|gb|EFR85574.1| YubA [Listeria monocytogenes FSL F2-208]
          Length = 228

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 81/201 (40%)

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                      +  L+I+   + LF+  +DG  +   L  +      A+ +++       
Sbjct: 5   SSIGSIVGTVTEVVLAIVTTPLVLFYLLKDGKKLPDFLLKMLPVNGRAHTRQVLGEANHQ 64

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           I S   G  I+++  G++L   Y + G+P  + L +I A  +++P   P      +I + 
Sbjct: 65  ISSYIRGQIIVSLCIGILLFIGYLIIGLPYALTLAIIAACTSIVPYLGPAIAITPAIIIA 124

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           I  + +    L +   +   +  K + P ++G  +K+  +   F ++      G+LG+  
Sbjct: 125 IVTSPWLLIKLIIVWCVVQLLEGKFISPQVMGKTLKVHPITILFVILVAGNLFGILGVIF 184

Query: 331 GPVLMALIAVIWKESIMAIKE 351
                A++ VI     +  K 
Sbjct: 185 AVPGYAVLKVIVTHVFIWFKR 205


>gi|170696850|ref|ZP_02887946.1| protein of unknown function UPF0118 [Burkholderia ambifaria
           IOP40-10]
 gi|170138024|gb|EDT06256.1| protein of unknown function UPF0118 [Burkholderia ambifaria
           IOP40-10]
          Length = 658

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 54/349 (15%), Positives = 120/349 (34%), Gaps = 20/349 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           QG++   +   ++ +LYF +    PV  A+++ F   P+ +     K      ++V+  V
Sbjct: 25  QGLITLAVGVTVVAALYFAREILIPVTLAILLSFLVAPLANLLGRIKLGH--VVSVLLAV 82

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS----DIPGGMWASELWT 124
           ++    IV L  +    + ++   + +   +  + I     L+    +   G     L  
Sbjct: 83  TMSLSVIVVLGGVIAAQITDLAIGIPRYQASIDNKISAVHGLTVEKLNRLAGAAGQALQR 142

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIP-----------RFASRFGMIFLDYCLSIIFMIIA 173
             +  PQ+ +  + +         +P           + A R     +    +   + + 
Sbjct: 143 ATVDQPQATRNSAPSASGVQQPAVLPVEVREPSQTPFQLARRVLSPVVRPLETAFIVFVV 202

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
                     +  +   L                 + +   F+    I  G G+V+G   
Sbjct: 203 TIVILLQRDDLRDRAIRLLGSRDLHRTTTAMDEAARRLSRYFVSQLGINAGVGIVIGIGL 262

Query: 234 WLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
            + GVPS V  G++ A++ ++P  G    +  A ++   +      A    +   I   +
Sbjct: 263 SIIGVPSPVLWGILAALLRLVPYVGIWISAILATALAAAVSPEWSMAIWSLVLFLIVELL 322

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIA 339
           V + + P L G    L         +      G +GL +  P+ + L+ 
Sbjct: 323 VGQVVEPLLYGRSTGLSPFSVVVAAIFWSWIWGPIGLILSTPLTLCLLV 371


>gi|163754904|ref|ZP_02162025.1| hypothetical protein KAOT1_02782 [Kordia algicida OT-1]
 gi|161324971|gb|EDP96299.1| hypothetical protein KAOT1_02782 [Kordia algicida OT-1]
          Length = 362

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 55/351 (15%), Positives = 128/351 (36%), Gaps = 18/351 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   + +F++L  LY ++     +  A +I     PI      + +  +T   +    
Sbjct: 12  KALAVILGVFLLLYFLYKIQVVIVYIAIAAVISLIGRPIVGVLKRRLKFRNTIAVIFTMT 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ LF+  ++        +   L    +   Q  I       +      +  L TK++ 
Sbjct: 72  IMIGLFVGLIMMFIPLVAEQGHNLSLLNIEELQGNI-------ENLYEQISGYLSTKNID 124

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             QS+K              IP F +       ++ + ++ ++   FF  +D   +   +
Sbjct: 125 LDQSIKE--SKIFANIDYALIPNFFNALISGLGNFSIGLLSVLFISFFLLKDSKLLEDGM 182

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L  +     W +    +  ++   F+G+    I   ++   A  + G+ + + +  + 
Sbjct: 183 LVLVPNNKEQRWSRSFEKIKDLLSRYFVGLVFQIIILFVIYTIALLIFGISNAIVIAFLC 242

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGN--------IFNATCLFLWGAIELFIVDKTL-RPF 299
           A++ +IP   P+    + + L +  N        I   T   +   +   ++D  L +P 
Sbjct: 243 ALLNLIPYIGPLFSGILMMVLCMTSNLEADFSEVILPNTIGVMIFFLIAQLIDNFLSQPL 302

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +    +K   L  F  ++      G++G+ +       I VI KE +   K
Sbjct: 303 IFSNSVKSHPLEIFLVIIIWGILFGIIGMVVAVPSYTAIKVILKEFLSDNK 353


>gi|32475947|ref|NP_868941.1| membrane protein- a permease [Rhodopirellula baltica SH 1]
 gi|32446490|emb|CAD76326.1| putative membrane protein-putative a permease [Rhodopirellula
           baltica SH 1]
          Length = 384

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 57/358 (15%), Positives = 118/358 (32%), Gaps = 39/358 (10%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM-- 71
            +    +  ++Y+L+    P + AL I     PI     ++   +    A +     +  
Sbjct: 18  ILTAIALTAAVYWLRSVLIPFVVALFIVSGITPILDFLQARLNVNRIVAAGVTFALAIGG 77

Query: 72  CLFIVPLLFLFYYGMLEMKELV-------------------SKVVLANQHGIPVPRWLSD 112
              +   ++L    M E  +L                    ++   +++ G      ++D
Sbjct: 78  TFLVGMSIWLSMAQMSEEGKLYRMRVSEIVSNAEDWLHENVAERFESSEVGERSEAAVAD 137

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
           +      + +       P  L   +   L+     F+    +           + I ++I
Sbjct: 138 L-VEESEATVVPAERQEPDELLANAAADLRDQLEAFLRNAVATLSSELFQLGSTSIVILI 196

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
            +FF                 +L       ++  V + +RS     T+I++  G+V G A
Sbjct: 197 YVFFLLLG-------------NLSGYGENTLAYQVDRQVRSYLFVKTMISLATGIVFGMA 243

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPI---SFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
            WL GVP  +  G++  ++  IP   PI         I L   G++              
Sbjct: 244 LWLFGVPMALTFGLLAFLLNYIPNIGPILASILPLPFILLHPDGSMLWMIIAIAVTCSIQ 303

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESI 346
                 L P L+G    L  +     L+      G+ G+F+  P+  A+   + +  +
Sbjct: 304 VASGNLLEPKLMGNSADLHPVVILLALMFWGTLWGITGMFLATPITAAIKIALDRMDV 361


>gi|332073204|gb|EGI83683.1| hypothetical protein SPAR50_0852 [Streptococcus pneumoniae GA17570]
          Length = 343

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/316 (13%), Positives = 108/316 (34%), Gaps = 6/316 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L     P L    + + + PI +      + +     +I   +++   ++ +++L    
Sbjct: 11  VLNTIMIPFLLGGFLYYLTNPIVTFLNKVCKLNRLLGILITLCTLIWGMVIGVVYLLPIL 70

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  L   ++ +      V   + D+        L  +      +L  +    +  N 
Sbjct: 71  INQLSSL---IISSQTIYSRVQDLIIDLSNYPALQNLDVEATIQQLNLSYVD---ILQNI 124

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           ++ +           +   L +I   + L +F  DG      L+         +   + +
Sbjct: 125 LNSVSNSVGSVLSALISTVLILIMTPVFLVYFLLDGHKFLPMLERTILKRDRLHIAGLLK 184

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   I     G++I AI  G +    Y + G+   +   + + +  +IP   P      
Sbjct: 185 NLNATIARYISGVSIDAIIIGCLAYIGYSIIGLKYALVFAIFSGVANLIPYVGPSIGLIP 244

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            I   I  +        ++  +   +    L P +VG  +K+  +     L+      G+
Sbjct: 245 MIIANIFTDPHRLLIAVIYMLVVQQVDGNILYPRIVGSVMKVHPITILVLLLLSSNIYGV 304

Query: 326 LGLFIGPVLMALIAVI 341
           +G+ +     +++  I
Sbjct: 305 VGMIVAVPTYSILKEI 320


>gi|209542427|ref|YP_002274656.1| hypothetical protein Gdia_0244 [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209530104|gb|ACI50041.1| protein of unknown function UPF0118 [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 376

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 113/340 (33%), Gaps = 11/340 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +++ ++++S++ +      V +A +I      + +    +      +LA+   V V+  
Sbjct: 44  AILLAVMVLSIWLIGDVLMVVFAATLIAVILHNLAAMVERRTRL-PYWLALSLVVVVLLA 102

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH-PQS 132
            I  L +     + E          A +  I +      + G + AS +    L + PQS
Sbjct: 103 AIGGLGWSSGPAIAE---------QATRLRIALTTQAHSLRGQLNASTMGRTVLDYLPQS 153

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           L               I    +           ++  ++IA  +F          L  L 
Sbjct: 154 LGGNQAGGGDNGMGSRIAGSMTGVLSSAFGAAGTLAVILIAGLYFALSPALYVNGLLRLI 213

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                   + +  +  + + +   G  +  +  G++ G   W  GVP  +ALGV+  +  
Sbjct: 214 PPGHRPAARTLLLVAGRTLWAWTAGQALDMLVVGILSGVGLWFIGVPLALALGVVAGMAN 273

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
            IP          +I L +         +    A   F     + P +    +++P   T
Sbjct: 274 FIPYIGAFIGAVPAILLGLSQGTREGLLVMALYAAIQFFEGNVMAPLIQRHAVQMPPGLT 333

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
                     +GL GL +   L A +  +   +   + E 
Sbjct: 334 ILSQTVFGTILGLPGLVLASPLTAALLAMMDRATPPLDEE 373


>gi|117620612|ref|YP_856210.1| PerM family permease [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117562019|gb|ABK38967.1| putative permease, PerM family [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 356

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 52/342 (15%), Positives = 116/342 (33%), Gaps = 14/342 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +  ++++      L+      AP+L AL++ +   WP+    + +   S T    +
Sbjct: 15  DPDAVTLFLLLVACFAVLWLFGDLLAPLLVALVMAYLLEWPVSR--LQRAGLSRTLATSL 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + L  +  L L      +   L  +      H      ++  +P           
Sbjct: 73  ILLLFIALTAMAFLGLIPTLASQGLNLAKESPAMLSH---AQDYVRTLPE----QYPELI 125

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +++  +++       + T G   +    S   +  +   +  I + + +FF  +D   + 
Sbjct: 126 NVTLVETIIDNIRQRILTGGEQLVSASLSSL-INVVAILIYAILVPLMVFFMLKDKQILM 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L             ++   + + I +   G  I  +  G++   A+ + G+   V L 
Sbjct: 185 GGLRRFLPR-NRTLVNRVWVEMNEQILNYIRGKVIEILIVGVISYVAFAMLGLRYSVLLA 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V      +IP  GA      V++  L + G     T L +   +   +    L P L   
Sbjct: 244 VAVGFSVLIPYIGAAAVTVPVAMVALFQWGLTPEFTWLMVVYTVIQVLTGNVLEPILFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            + L  +     ++      G  G+F    L  L+  +    
Sbjct: 304 ALNLHPVAIIIAVLVFGGLWGFWGVFFAIPLATLVKAVLNAW 345


>gi|78043486|ref|YP_359395.1| hypothetical protein CHY_0537 [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995601|gb|ABB14500.1| putative membrane protein [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 351

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 55/333 (16%), Positives = 124/333 (37%), Gaps = 13/333 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVIATVSV 70
           +R   + + L+  Y ++  F P + A  + +   WP+   ++ +K+ +  F   +  + +
Sbjct: 10  LRVAGIVVALIFFYRIRAVFFPFILAGFLAYLLHWPV--EWLERKKINRGFGIFLLYLVL 67

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
             +  +   F     + ++ EL++ +    NQ    + R  + I  G    E+    L  
Sbjct: 68  GIMIFLITKFFLPSFIKQINELIAVLPGYLNQVQEFLDRQQAGIDRGSLPPEIKKSLLIQ 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             SL+      LK+                   +    +   I  ++  +D  ++ + + 
Sbjct: 128 IDSLEKSVAGILKSLLATL---------WGISSHLFDFLLAPILAYYILKDVHNLKKNIL 178

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                 F        ++   V      G  +I +  G++ G   ++  +P    LG++  
Sbjct: 179 GYLPVDFRDEAIIFLKVCDHVFGRFIKGHLLICLTVGILTGLILYILKIPYSFLLGLLAG 238

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           IM ++P   PI  +   + L +           L   +   I    L P ++G  + L  
Sbjct: 239 IMELVPYFGPILASIPILALALLKGKVLFIKTLLAIVLIQQIEGNVLAPKILGDSLGLHP 298

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L   F L+ G    G+LG+ +   + A++  ++
Sbjct: 299 LTVIFLLLCGFNLGGVLGMILAVPVAAVVRNLY 331


>gi|305666559|ref|YP_003862846.1| hypothetical protein FB2170_09836 [Maribacter sp. HTCC2170]
 gi|88708828|gb|EAR01063.1| hypothetical protein FB2170_09836 [Maribacter sp. HTCC2170]
          Length = 362

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 56/343 (16%), Positives = 124/343 (36%), Gaps = 18/343 (5%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + ++L+ LY ++   A +  A +      PI      + + ++T   +   + ++ +   
Sbjct: 20  IALLLLFLYKIQSVLAYLAIAAVASLLGRPIVLFLRRRLKFNNTIAVIATMILLIGIIAG 79

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +       + + + L    + A Q         +++         +    S      I 
Sbjct: 80  IIALFIPLLVSQGQNLSLLNIDALQ---------ANVENLYRQVTEYFSLSSMEIEQGIK 130

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                      FIP F + F  +     + +  ++   FFF +D     + L        
Sbjct: 131 GSEIFANLDFGFIPNFLNSFVGVLGSLSIGLFSVLFIAFFFLKDSKLFEEGLLVFIPDNK 190

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
            +  KK    +  ++   FLG+ +  +   ++  +  ++ G+ + + +  + A++ +IP 
Sbjct: 191 ESRLKKSINTIKDLLSRYFLGLVLQILILFIIYSTVLFIFGIENAIVIAFLCALLNLIPY 250

Query: 257 GAPISFTAVSIYLLIKGN--------IFNATCLFLWGAIELFIVDKTL-RPFLVGGPIKL 307
             PI    + + L +  N        I   T   + G +   +VD    +PF+    +K 
Sbjct: 251 VGPIIGGVLMMTLTMTSNLGYDFSTVILPKTIYVMIGFVIGQLVDNFFSQPFIFSNSVKS 310

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             L  F  ++ G    G+ G+ I       I VI KE +   K
Sbjct: 311 HPLEIFLVIIIGGLLFGITGMIIAVPGYTAIKVILKEFLADNK 353


>gi|255326282|ref|ZP_05367368.1| hypothetical membrane protein [Rothia mucilaginosa ATCC 25296]
 gi|255296736|gb|EET76067.1| hypothetical membrane protein [Rothia mucilaginosa ATCC 25296]
          Length = 428

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/347 (12%), Positives = 104/347 (29%), Gaps = 16/347 (4%)

Query: 14  WMIMFIILVSLYFLKGFF-----APVLS---ALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  +  + V L     +      A V     A+ I     PI     S          + 
Sbjct: 89  FGFLMTVGVGLALFAYYIFNNVGALVGWVTGAIFIALGLDPIVRRLESW-GIKRGIGVIA 147

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
                       ++ +      +  + +       Q+ I    W  ++      S    +
Sbjct: 148 VLAGFAGAVTGLVMTIGPVISEQASKFIQYAPGIYQNTIDS-DWYHELDQRFNISTWVNE 206

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           ++          ET   ++ ++         G         +I ++    +F     +I 
Sbjct: 207 NIP------KFLETTFSSSQVNSFMSSLVSAGSTLAQSVTGVIIVLFLSLYFLTSMDTIK 260

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                L         K I+  + + + +  +G  ++A+    V        G      + 
Sbjct: 261 AWGVRLAPASKRVRVKYITDKITESVGNYVMGQALVAVLNAFVAFFIMLFVGFSFPQLMA 320

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++  I+A IP    +    ++  +L+      A    +   + L +    + P ++   +
Sbjct: 321 LVVMILAFIPLVGGVIALILTSLILLTQGWSLALWFAVAYFLYLQVEAYLISPRIMARAV 380

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            +P       +  G    G+LG  I     A + ++ +E  +  ++ 
Sbjct: 381 SVPAGVAIISVAAGGALWGVLGALIAIPAAASMLILVREVFIPRQDQ 427


>gi|215487785|ref|YP_002330216.1| predicted inner membrane protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312967770|ref|ZP_07781985.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|215265857|emb|CAS10266.1| predicted inner membrane protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312287967|gb|EFR15872.1| conserved hypothetical protein [Escherichia coli 2362-75]
          Length = 353

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 52/346 (15%), Positives = 113/346 (32%), Gaps = 12/346 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      ++F  G  AP+L A+++ +          S        
Sbjct: 10  RRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWPTVRLQSIGCSRPWA 69

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            +++  + V  L ++  + L       +  +     + N+            P  M A  
Sbjct: 70  TSIVLILFVGILLLMAFVVLPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAGI 129

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +     +    +  + ++ +K +    +           L   + ++ + + +FF  +D 
Sbjct: 130 IDAMAENMRSRMLTMGDSVVKISLASLV---------GLLTIAVYLVLVPLMVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++ + + + I +   G  +  I  G+     + L G+   
Sbjct: 181 EQMLNAVRRVLPRNRGLAG-QVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNYS 239

Query: 242 VALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP  GA +    V  + L   G        F    I   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAFVVTIPVIGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           L    + L  L     +V      G  G+F    L  LI  +    
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAW 345


>gi|291570815|dbj|BAI93087.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 351

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 60/353 (16%), Positives = 119/353 (33%), Gaps = 22/353 (6%)

Query: 3   ETMLNPQGIMRWMIMFII-LVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEES 58
           E   +   ++R++++F      + F+  F       + A I  F                
Sbjct: 10  ENFFSNSRLVRYLLLFAFGWAFIQFIAYFETIIIVFVFAAIFAFLLNYPVQWLQKY---- 65

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                   T   + + +V    L     L     ++ V    Q     P  L      + 
Sbjct: 66  --------TSHTVAVVVVFSTSLLLLIGLLATLGLAIVSELQQFVTQAPDLLDSFVNLLD 117

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             E   K+ +   +L  L E   +     F   F +      L   +  I +++  FF  
Sbjct: 118 QIETLLKNANIRVNLDFLQEDLKQEVSNLF--GFGTAAVGKILSGLVEFIIILVVTFFML 175

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            +G  +     S     FP+  +  +  +       F G  I+++  G      Y +   
Sbjct: 176 LNGEQLWASFQSF----FPSNIEDFTLSLRNNFLGFFRGRLILSVFFGFSAFFVYLILQA 231

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + L  +  +  +IPG        +S  +++   I  +  + ++  +   I +  L P
Sbjct: 232 PYPLFLATLVGVFDLIPGVGATIGIILSAIIVLPKGILISLQVIVYCVLLQQIEENILMP 291

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            ++   + L  +  FF L+ G R  G LGLF+   + A+I          +K+
Sbjct: 292 RIMQNSVNLNPVVIFFALLLGARIAGFLGLFLSIPIAAVIVGFVNIKNAEVKQ 344


>gi|304393250|ref|ZP_07375178.1| membrane transporter [Ahrensia sp. R2A130]
 gi|303294257|gb|EFL88629.1| membrane transporter [Ahrensia sp. R2A130]
          Length = 353

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 54/328 (16%), Positives = 120/328 (36%), Gaps = 15/328 (4%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
            + +   +LY  +GFF P+  A++   T  P+   F  +   S        T  V+ L +
Sbjct: 13  FIILFTAALYLARGFFLPIAVAVVFALTMSPVIRFFTRRGVPSP------VTAFVLVLIL 66

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V    L  Y +  +  +   +  A + G  +   L+ +   + A +   K +    + + 
Sbjct: 67  VGFGVLAIYTL--VIPMADWIERAPEIGNQLKEKLAALKPSLQAVQEAQKEVEAATAGEG 124

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +   +   G  F    AS      L     ++  ++ L F    G     +L    + +
Sbjct: 125 RAVQKVAVEGPGFFAYAASSV----LAGITMLVITLVLLTFLLASGDMFYAKLVQAFDSM 180

Query: 196 FP-AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                  +I+  + + +      + II    G+V+    +L G+P+    G +  +   +
Sbjct: 181 KDKKRALRIAHDMERDVSRYLFTIAIINASLGVVIAIGLYLLGMPTPYIWGAVAGLANFM 240

Query: 255 PGGAPISFTAV--SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P    I       ++ ++    +  A  +  +     FI  + + P +VG  ++L  +  
Sbjct: 241 PYVGAILGLGAATAVAVVSFDTLAPALTIAAFYFSCTFIEGQFITPTVVGRRLELNAVAV 300

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           F  +       G++G  I   L+ ++  
Sbjct: 301 FISVAFWAWLWGIVGALIAVPLLVILKT 328


>gi|170738761|ref|YP_001767416.1| hypothetical protein M446_0413 [Methylobacterium sp. 4-46]
 gi|168193035|gb|ACA14982.1| protein of unknown function UPF0118 [Methylobacterium sp. 4-46]
          Length = 679

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 64/356 (17%), Positives = 113/356 (31%), Gaps = 30/356 (8%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I  +I+ +LYF +    P+  A+++ F  WP+       +       A I    + CL
Sbjct: 33  LLIAALIVAALYFGREILIPIAIAVLLSFVLWPL---VSLLRRLRLGRTASIGLSVLTCL 89

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT--KHLSHPQ 131
            +V LL L      ++ +L S +    +        L + P G  A  + +  KHL    
Sbjct: 90  GVVGLLTLVIGL--QVADLGSNLPQYQRTIERKLENLREGPVGSIAGYMRSIGKHLQQAG 147

Query: 132 SLKILSETFLKTNGIDFIPR---------------------FASRFGMIFLDYCLSIIFM 170
           S+                P                       A R     L    +   +
Sbjct: 148 SIPEDKAKPQDPTAPRPAPSVQNPDKPVLVEVRERELTPLELAERLLSPALAPLATTGIV 207

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
            + L F       +  +L  L                 + +   FL    +  G G+ +G
Sbjct: 208 FVVLMFILGQREDLRDRLIRLAGSSDLHRTTVAMNDAARRLSRFFLVQLALNAGFGVAIG 267

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
              W+ GVPS +  G+ TA+M  +P         + + L    +      L       + 
Sbjct: 268 IGLWIIGVPSPILWGIFTALMRFVPYVGAFLSALLPLLLAAAVDPGWHMVLATAALFLIL 327

Query: 291 --IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             IV + + P L G    L         +      G +GL +   L   + V+ + 
Sbjct: 328 EPIVGQVVEPLLYGHSTGLSPFAVLVSALFWTWLWGPVGLLLSTPLTVCLVVLGRH 383


>gi|325677165|ref|ZP_08156832.1| integral membrane protein [Rhodococcus equi ATCC 33707]
 gi|325552038|gb|EGD21733.1| integral membrane protein [Rhodococcus equi ATCC 33707]
          Length = 401

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/310 (13%), Positives = 108/310 (34%), Gaps = 13/310 (4%)

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS 111
           + ++    +   ++A V  + +    L F+    +  + +L  +   +         WL+
Sbjct: 74  LHRRGVPRSAAVLVAVVGTIGIVGAILSFVVQQFVEGLPDLSDQFTTSVTK---AQEWLT 130

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
             P      ++     +  ++++   E              A+  G IF    L+    +
Sbjct: 131 QGPLHFSEDQIRHAGDNVVKAIQSNQEALTSGA-----LTTATVIGEIFAGAFLT----L 181

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
             L FF   G  + + +  +         +   R     +         +A  + + +G+
Sbjct: 182 FTLVFFLYGGNQVWEFVTRIIPKNTRGRVRLAGRQGFNSLVHYTRATVAVAAVDAIGIGA 241

Query: 232 AYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
              + GVP  + L  +  + A IP  GA ++     +  L+   +  A  +       + 
Sbjct: 242 GLAILGVPLALPLASLVFVGAFIPIVGAFVTGFLAVLVALVTKGLLTALIVLGIIVGIMQ 301

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +    L+P L+G  ++L  L     +  G+   G++G  +   ++A +    +       
Sbjct: 302 LEGHVLQPLLLGRAVRLHPLAVVLAITTGIVLAGIVGGLLAVPIVAFLNTAIRSLCAGDT 361

Query: 351 ENKEKISSNF 360
           +  E++  + 
Sbjct: 362 DEAEEVYESL 371


>gi|317492767|ref|ZP_07951192.1| hypothetical protein HMPREF0864_01956 [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919290|gb|EFV40624.1| hypothetical protein HMPREF0864_01956 [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 354

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 118/356 (33%), Gaps = 14/356 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +PQ +    I+ +    +YF  G  AP+L A+++ +   WP +   +     S  
Sbjct: 10  RRRFTDPQAVALLTILLVGFCIIYFFNGILAPLLVAIVLAYLLEWPTHK--LQLIGFSRV 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +  +   +    + ++ +  +      +   L++ +    +       + + +P     S
Sbjct: 68  WAVIAVLIVFGGITLLSVFVIAPAVWQQGFNLMADMP---KMVTRFYEFAATLP-----S 119

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                  +    + + +         + + + +    +  L   + +I + + +FF  +D
Sbjct: 120 RYPALVDAGIIDMVVENIRAKMAVMGESVVKLSLASLVGLLTLAIYLILVPLMVFFLLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +         +     + + I +   G  +  +  G+     + +  +  
Sbjct: 180 KEQMLNAVRRVLPRDRGLAGQVWIE-MNQQITNYIRGKVLEMVVVGIATYLVFLVVDLHY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTLRP 298
            + L V+     +IP  GA +    V I  L +  +      LF+   +   +    L P
Sbjct: 239 ALLLAVLVGFSVLIPYIGAVLVTIPVVIVALFQWGLGADFWTLFIAYLVVQGLDGNLLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            L    + L  L     ++      G  G+F    L  L+  +            +
Sbjct: 299 LLFSEAVNLHPLVIILSVIIFGGLWGFWGVFFAIPLATLVKAVIHAWPDEFISEAD 354


>gi|182417136|ref|ZP_02948509.1| permease [Clostridium butyricum 5521]
 gi|237667128|ref|ZP_04527112.1| permease [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378978|gb|EDT76484.1| permease [Clostridium butyricum 5521]
 gi|237655476|gb|EEP53032.1| permease [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 374

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 55/334 (16%), Positives = 117/334 (35%), Gaps = 12/334 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
            +P + AL+  +   P+   F  K     +F      + ++ +  V L F     +  + 
Sbjct: 43  LSPFIYALVCAYVLNPVVKCFERKFNIKRSFAIAATYLILVGIVFVGLFFTIPSIIDSIL 102

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            +  ++     + + V   ++        +EL T+  S   S      T +    +D + 
Sbjct: 103 NITGEIP---NYMVKVQELINMSLSNERINELITQ--SGLLSSIQNIATQIGNVSMDLLQ 157

Query: 151 RFAS---RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG--EHLFPAYWKKISR 205
            FA          ++  L  +  I  L    +D  +   +  +    +    +      R
Sbjct: 158 DFALYLLSLTSNLVNIVLGFLISIYVL--IEKDNIAKMAKTLTYMSLKEKNGSRLVSFIR 215

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              K+I        I ++  G +      +  VP    L +I  I  MIP   P+    +
Sbjct: 216 TYNKMIGMYVGIKAIDSMIIGSLALIGLTILKVPYAPLLALIVGITNMIPYFGPLVGIVI 275

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           S  + +  +   A  + +            L P L+G  + +  L   FG+  G   +G 
Sbjct: 276 SFVVTLFSSPLQAVVVAMLLFALQQFDAWYLEPKLIGKKVGVSPLGIIFGVTLGGGILGP 335

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +G+ +G   MA   + + + +   KE+ +++   
Sbjct: 336 VGMILGSPTMATARIYYNKLVDRFKESNKELVEK 369


>gi|42783519|ref|NP_980766.1| hypothetical protein BCE_4473 [Bacillus cereus ATCC 10987]
 gi|42739448|gb|AAS43374.1| membrane protein, putative [Bacillus cereus ATCC 10987]
          Length = 356

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 49/311 (15%), Positives = 110/311 (35%), Gaps = 11/311 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L A  I +   P+      +            T++++ ++I+    + Y       
Sbjct: 43  ITPFLIACFIAYLLHPLIEKIHKEGMPR--------TLAILLIYILFFGGIGYGIYKGTP 94

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            ++ ++   N+      +       G+      T +       K+          I  + 
Sbjct: 95  VVIKQLQEINEQFPQFTKMYDSWMDGVTEQ---TANFPSFIHEKVKQIFVGVETKIQALL 151

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     LD  L I  +   +F+  +D          L    + +  + +++ + K 
Sbjct: 152 NKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQMLAKEIDKS 211

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI     ++ + 
Sbjct: 212 LGSYIRGQLFVCLVLGGVSALSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGAIPTLMIA 271

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +        +  AI  F+    L P++VG  +++  +     L+ G    G++GL I
Sbjct: 272 ATVSTSLLIKAGIAIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEVGGIVGLLI 331

Query: 331 GPVLMALIAVI 341
              ++A+I  +
Sbjct: 332 SVPILAVIRTV 342


>gi|238897271|ref|YP_002922948.1| putative permease [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465026|gb|ACQ66800.1| putative permease [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 354

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 59/354 (16%), Positives = 124/354 (35%), Gaps = 20/354 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +PQ +   +I+      LYFL G  AP+L A+++ +   WP  +S +     S  
Sbjct: 10  RRHFTDPQVVALLIILVGGFCILYFLSGILAPLLVAIVLAYLLEWP--TSKLQVLGCSRL 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               I     + + ++ +  +      +   L S +             L+         
Sbjct: 68  CAVSIIQALFVGVGLLAIFVVVPNVWQQGMNLTSDMPKMLNQFNNFSSTLTK-------- 119

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
              T   +    +   +         D + + +    +  L   + +I + + +FF  +D
Sbjct: 120 RYPTLVDAGIVDMIADNLRNRLAGVGDSVVKISLASLIGLLTLAIYLIVVPLMVFFLLKD 179

Query: 181 GFSIS---QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
              +    Q++      L    WK++++ +   IR   L M I+A+         +W+  
Sbjct: 180 KKQMLNNFQKILPRDRSLAGKVWKEMNQQITNYIRGKVLEMVIVAVA----TYLVFWILD 235

Query: 238 VPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNI-FNATCLFLWGAIELFIVDKT 295
           +   + L V+     +IP  GA I    V +  + +  I  +   L +   +   +    
Sbjct: 236 MRYSLLLAVLVGFSVLIPYIGAVIVTIPVVLVAMFQWGIDAHFWTLLIAYLVVQALDSNL 295

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           L P L    + L  L     ++      G  G+F    L +L+  + +     +
Sbjct: 296 LVPVLFSEAVNLHPLMIILSVIIFGGLWGFWGVFFAIPLASLVKAVIQAWPKEL 349


>gi|188584262|ref|YP_001927707.1| hypothetical protein Mpop_5076 [Methylobacterium populi BJ001]
 gi|179347760|gb|ACB83172.1| protein of unknown function UPF0118 [Methylobacterium populi BJ001]
          Length = 675

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 57/363 (15%), Positives = 110/363 (30%), Gaps = 34/363 (9%)

Query: 11  IMRWMIMFIILVSLYFL-KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           +   MI+F I+V+  FL +    P+  A+++ F   P+ +     +         +A + 
Sbjct: 26  LASSMIVFAIIVAGLFLGREVLIPIAIAVLLSFVLGPLVNFLRRLRLGR-----AVAVLV 80

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + L    +  L     +++ EL   V    +        L +   G     +   + + 
Sbjct: 81  SVLLAAGIIAALATVIGVQVAELAQDVPRYQRTIERKVEGLREGTLGRTMDYIANINRAI 140

Query: 130 PQSLKILSETFLKTNGIDFIP--------------------------RFASRFGMIFLDY 163
            Q  +   E   K                                    A+         
Sbjct: 141 HQGGEENKEAAEKARREQAARDSTRKTEPEPPKPMLVQVEERRPSPLELATTVLSPVAQP 200

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
             +   +I+ L F       +  +L  L                 + +   FLG   +  
Sbjct: 201 LATAGIVIVVLLFILMQREDLRDRLIRLAGSSDLHRTTVAMDDAARRLSRYFLGQLALNS 260

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCL 281
             G+V+G   W+ GVPS V  G+   +M  +P           +++   +          
Sbjct: 261 AFGVVIGVGLWIIGVPSPVLWGIFALVMRFVPYIGAFLSAVLPIALAAAVDPGWSMVVAT 320

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           FL  AI   IV + + P + G    L         +      G +GL +   L   + V+
Sbjct: 321 FLLFAIVEPIVGQIIEPLVYGHSTGLSPFSVLVSALFWTWLWGPVGLLLSTPLTVCLVVL 380

Query: 342 WKE 344
            + 
Sbjct: 381 GRH 383


>gi|257870155|ref|ZP_05649808.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
 gi|257804319|gb|EEV33141.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
          Length = 391

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 50/338 (14%), Positives = 111/338 (32%), Gaps = 7/338 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+       +     P L  LI+ +   P+     +KK      +  I  + ++ + +
Sbjct: 35  ISFLFDPFFVIISTLIPPFLFGLILYYLFNPLVDRLETKKIPRIVSIGGIYLLILLVIVL 94

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
                           +     L          +L++ P G    ++         ++  
Sbjct: 95  AGFQLYPIIQKQTTDLINQFPDLIADFERNADSFLANTPFGAQIDQITDTLQKVANNIMD 154

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
               + +T          S          +++    I  FF  R+       L S+    
Sbjct: 155 FIGDYWQTGAAGL-----SSIFSTISTLFIALFTGPIIAFFLLRNPNKFYYSLLSIVPPR 209

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   +  I +I    + +   G  I +   G +    + L G+     L +   I+ +IP
Sbjct: 210 FRKDFNTIVKIADLQVGAFLKGQIISSFILGGIYWVIFLLIGLEYASILAIAAGILCIIP 269

Query: 256 GGAPISFTAVSIYLLIKGNIFNAT-CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
              P      ++++  + +       L  W A++L   D  + P ++G  +++  +    
Sbjct: 270 YIGPFIVFFPALFIAAQDSTGMLIKFLIAWFAVQLLHGDLVV-PRVMGDRLQIHPITILV 328

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            L+     MG++G+  G  +  L+ V+        K+ 
Sbjct: 329 VLLVMGDLMGIVGVIFGIPIYCLLKVLVVYGFRKFKQR 366


>gi|332179279|gb|AEE14968.1| protein of unknown function UPF0118 [Thermodesulfobium narugense
           DSM 14796]
          Length = 341

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 57/340 (16%), Positives = 120/340 (35%), Gaps = 14/340 (4%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           ++  I + L+  K F   VL ALI      P       KK     F ++I   SV+   +
Sbjct: 13  LLIAITIFLFVFKDFIIQVLLALIFAIVLSPPVDFLEKKKIPR-FFGSLIVFFSVISFMV 71

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +  L        E+++LV+            P +L +            +          
Sbjct: 72  IIYLLTAPILNFEIQKLVASF----------PEYLKNFDDAFQNFLANLQINPGHYIWLN 121

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDY---CLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           L    L+ +  ++I    +  G    D     +S +   I   FF +D   +++ +  + 
Sbjct: 122 LILQKLRDHFQEWIGNVLNVVGASTFDLINKAISWLVFPILTLFFMKDLPILAKGILEIF 181

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                    +I   +   IR+   G  I+++  G + G   +  G+   + LG + AI+ 
Sbjct: 182 PQSKRTLITEIGSCLTHGIRAYVKGQLILSVIIGFLTGLGLFFLGIEYFLLLGFLAAILE 241

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
            IP   P+  +  ++ + I  +   A  + ++  +   +    + P ++   I +P    
Sbjct: 242 FIPYLGPMLASIPALIISIAISPLKAFIVLIFYIVLHQLEGVIIAPNIMSKSIDVPPSLV 301

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              L        + G+ +   L A+   +++        N
Sbjct: 302 IIVLTIAAALGSIPGMLLSIPLTAISKSLYEYWQKNRTNN 341


>gi|312135146|ref|YP_004002484.1| hypothetical protein Calow_1121 [Caldicellulosiruptor owensensis
           OL]
 gi|311775197|gb|ADQ04684.1| protein of unknown function UPF0118 [Caldicellulosiruptor
           owensensis OL]
          Length = 354

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 57/359 (15%), Positives = 120/359 (33%), Gaps = 16/359 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLK------GFFAPVLSALIIGFTSWPIYSSFISK 54
           M    L  +     + + II + +YF            P L AL + +   P      +K
Sbjct: 1   MHIIKLVKRYFTDILFIAIIAIVIYFFANMKAFWPILIPFLIALFLSYLLKPCVDFLETK 60

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
                     I+ +    +     + +  Y +        +++      I + +      
Sbjct: 61  IRSRD-----ISILIWFAIIFGITVMVCVYFIPLFVNETKQLIQNVPEYIALIQKWFYEI 115

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                ++L         +  I +E   K     F+               L  + + I  
Sbjct: 116 DSKLLNKLNIDIKEILNANSINTEAVSKQTLSIFL-----NIVKSISSNILYYLLIPIIS 170

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           F+  RD   +   +  L    +      I   + +V+     G  + A+  GL+    + 
Sbjct: 171 FYILRDWKRLVMWIKWLLPEKYRKEGLYIFADINRVLHQYIRGQLLDAVIVGLLSFFGFS 230

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           L  V     LGVIT I  +IP   PI  +  ++ + +  +   A  + ++  +   +   
Sbjct: 231 LLSVRYAALLGVITGIGNLIPYFGPIFSSIPAVIIALSDSYIKAILVVVFLVLLQQVDSF 290

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            + P ++G  + L  L     ++   +  G + +F    + A+I +I+   +  IK  K
Sbjct: 291 IISPRVIGSKVGLHPLTIIIVIILANKIFGFVAMFFAIPIAAVIKIIFINIMKRIKSEK 349


>gi|54027467|ref|YP_121709.1| hypothetical protein nfa54930 [Nocardia farcinica IFM 10152]
 gi|54018975|dbj|BAD60345.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 422

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 98/301 (32%), Gaps = 13/301 (4%)

Query: 53  SKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD 112
            +          ++ V  + L    + F+    +  + +L  +V  +      +  WL +
Sbjct: 72  QRLGVPRWIGVFVSLVGSLGLVAGIMTFVVEQFVAGVPQLSDEVTASIHK---IQDWLIN 128

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
            P  +   ++     +  ++++   ++         +   A     +           + 
Sbjct: 129 GPPHLSDEQIRNAGDALVKAIQSNQDS---------VTSGALTTATVIGHILTGTFLTLF 179

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
            L FF   G  I + +  +         +    +    +         +A  + + +G+ 
Sbjct: 180 ILIFFLYSGDQIWEFVTRIVPTKHRERVRLAGELGFGTLVGFVRATVAVAAVDAIGIGAG 239

Query: 233 YWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
             + GVP  + L  +  I A IP  GA ++        L+   +  A  +       + +
Sbjct: 240 LAILGVPLALPLASLVFISAFIPIIGAFLAGFIAVFIALVTKGLVTALIVLGIIIAVMQL 299

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
               L+P L+G  + +  L     +  G+   G+ G  +    +A++    +  +    E
Sbjct: 300 ESHVLQPLLLGRAVSIHPLAVVLAIAAGLVLGGIAGGLLAVPFVAVMNTAIRSLLAESPE 359

Query: 352 N 352
            
Sbjct: 360 E 360


>gi|154496526|ref|ZP_02035222.1| hypothetical protein BACCAP_00818 [Bacteroides capillosus ATCC
           29799]
 gi|150274159|gb|EDN01250.1| hypothetical protein BACCAP_00818 [Bacteroides capillosus ATCC
           29799]
          Length = 415

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 55/334 (16%), Positives = 115/334 (34%), Gaps = 9/334 (2%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT---VSVMCLFIVPLLFLFYYGMLE 88
            P+L    + +    + S +       S   A+  +   V ++  FI     L     L 
Sbjct: 81  TPLLLGCALAYVLNILMSFYERHYFTHSVSPAIRKSRRPVCMLAAFITLAAGLILILNLV 140

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWA--SELWTKHLSHPQSLKILSETFLKTNGI 146
           + EL S V L  +   P    L++  G M A   +L     +   + K+       T G+
Sbjct: 141 LPELFSCVNLLLRQIPPAANSLANWLGTMDAVPEDLLASLRNVDWASKLEQIISFLTTGV 200

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL----FPAYWKK 202
             I   A           ++  F +I   +       +  Q + + +        +    
Sbjct: 201 GNIIGTAVSAVSSVFSGLVTAFFALIFSIYLLLGKERLGSQFNRIIKRYMSTGLCSNVHH 260

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +  ++ +      +G    A+  G +      +  +P     G + A  A+IP       
Sbjct: 261 VLSVLNECFHKYIVGQCTEALILGGLCTLGMLILQLPYATMTGAVIAFTALIPVAGAYIG 320

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             V  ++++  +   A    ++  I   +    + P +VG  + LP +     +  G   
Sbjct: 321 AGVGAFMILTVSPIKAIIFLIFIVILQQLEGNLIYPRVVGSSMGLPGIWALAAVTVGGGV 380

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           MG+ G+ +   L A +  + +E +  I   +E +
Sbjct: 381 MGIPGMLLCVPLAAAVYKLLREDVNRIPNKEEAL 414


>gi|309779659|ref|ZP_07674418.1| acetyltransferase, GNAT family [Ralstonia sp. 5_7_47FAA]
 gi|308921600|gb|EFP67238.1| acetyltransferase, GNAT family [Ralstonia sp. 5_7_47FAA]
          Length = 352

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 59/344 (17%), Positives = 126/344 (36%), Gaps = 8/344 (2%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             ++  Q  +  ++   I V ++ L+    P L   +I +   P      +++       
Sbjct: 2   SALIRRQAWLWGLVALAIGVLMWALRPVLTPFLLGALIAYMLQPGVEWL-ARRGLPRWIA 60

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A++  +    +  + +  +F     E  +L +K+         +  WL   P        
Sbjct: 61  ALVMILCFAAMAALLVTLMFAVVQTEGPQLQAKIPAL---LATLNAWLR--PKLAVFGLG 115

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               L H + L        + N    I ++    G   L    +++ + + LF+   D  
Sbjct: 116 VDLDLPHLRDLLAGPRYGGEGNSAIAIWQYLRTSGNAMLTVVGNVVLVPLVLFYLLYDRH 175

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + ++++SL    + A  +     + +++     G  ++ +        A  LAG    +
Sbjct: 176 QMFRRMESLVPRRWLAKTQAFVIDIDRMLSQYLRGQLLVMVVLAAFYPIALTLAGFEIAL 235

Query: 243 ALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            LG+ T +   IP  G A     AV   +L  G+++    + +   +   + +  L P L
Sbjct: 236 PLGLFTGLAVFIPYVGFAAGLALAVLAAVLQFGDLYGIGAVAVVYGLGQILENVFLTPRL 295

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           +G  I L  L   F L+      G  G+ +     A++A   +E
Sbjct: 296 IGERIGLHPLAVIFALLAFGHLFGFFGVLLALPASAVLAAALRE 339


>gi|291452564|ref|ZP_06591954.1| integral membrane protein [Streptomyces albus J1074]
 gi|291355513|gb|EFE82415.1| integral membrane protein [Streptomyces albus J1074]
          Length = 358

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 46/333 (13%), Positives = 114/333 (34%), Gaps = 33/333 (9%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSW--------PIYSSFISKKEESSTF 61
            +  W ++ +++  + ++  +   +  A +I             P++   +  + +  + 
Sbjct: 7   RVAGWCVVLLLVTGVAWVAVWLCVLFRAAVIPVLLALLGTALLTPLHRRLLRMRVQR-SL 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A +   +V+ +       +    +    ++V+   LA Q                  + 
Sbjct: 66  AAGLTCAAVLVVVGGATYIVVLALVDSGDQIVASAKLAAQD----------------VAG 109

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +    L   +       G        S  G++     +  +  ++ +FFF RDG
Sbjct: 110 FLGADEASLDDLASNARELFDRFGGPAASGVISGLGLVAQAGAMG-VLAVLLVFFFIRDG 168

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   L ++         + I R   + +     G T+IA+ +G++      L GVP  
Sbjct: 169 DRVVGSLRTMAPGHVGEITEAIGRRAYRAVEGFMRGTTMIALIDGVLTTIGLLLLGVPGA 228

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV----DKTLR 297
             LG +  I A IP         +++ + +         +  W  + +F+V       L+
Sbjct: 229 AGLGALVFIGAYIPYLGAFVSGVLAVLVALAD---RGVVIAAWTLLVIFLVQMLEGNVLQ 285

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           P +    +++        +  G    G++G+ +
Sbjct: 286 PVIQSRTVQMHPAVVLVAITAGATVGGVIGVLL 318


>gi|88657814|ref|YP_507702.1| hypothetical protein ECH_0910 [Ehrlichia chaffeensis str. Arkansas]
 gi|88599271|gb|ABD44740.1| conserved hypothetical protein [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 379

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 49/352 (13%), Positives = 125/352 (35%), Gaps = 14/352 (3%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           + R +I+  I++ ++ +K   AP  +A+I+ +   P+      + + S      I  +S 
Sbjct: 19  VTRSVIVLAIVLVMFVIKPVLAPCCTAMIMAYLLNPLVDKL-QRFKLSRQLSVAIILLSS 77

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVL-----ANQHGIPVPRWLSDIPGGMWASELWTK 125
           +C+ I  L+        ++  L+  ++           I + +  + I     +  +   
Sbjct: 78  LCVIIAFLVSFIPLAYSQLLSLIKFLMEKVPLIHKDSIISLLQKYNMIDYEEVSDAIKLP 137

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI------IALFFFYR 179
             S    L   +   L +   +F+                    +       + LF+   
Sbjct: 138 QASLKSLLHYENIKPLVSIFGNFLKNLDGILFSAINSSISISYTISIILITPLLLFYILC 197

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           +  SI +  D+L    + +  +  ++ + +VI +   G   +     +     + L  + 
Sbjct: 198 NWPSIVESADALVPVKYQSIARLYTKKIDQVISAYIRGQLSVCFIMAVYYIICFSLVKLK 257

Query: 240 SHVALGVITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
             + +G ++ IM  IP   PI  +  +    +L   +      +     +   +    + 
Sbjct: 258 YFLIIGFVSGIMTFIPYIGPISCAILSSITTMLQFNDWTMCGVVVTMFIVGQLVESNIIT 317

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           P L+G  + +  +    G++     +G  G+ +   + A++ V  +  I   
Sbjct: 318 PLLIGKRVDIHPIWIIIGMITCGSQIGFTGVLLSIPITAIVGVFVRALIAHY 369


>gi|319404185|emb|CBI77778.1| permease protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 385

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 50/344 (14%), Positives = 118/344 (34%), Gaps = 13/344 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  Q       +   +V ++ L     P ++ +++ +   PI   F  K      F  ++
Sbjct: 27  MKKQIFFWLGTLIFFIVFMFILGSILFPFIAGIVLAYFLNPIVQIFE-KIGIHRVFGTIL 85

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T+ ++ +F+V L+ L      ++++ +S  +    +       +         S +   
Sbjct: 86  ITLFIIIIFVVSLIILIPIISGQIQQFISNGLPIYVNR------IQTFFVEHNFSWVRRY 139

Query: 126 HLSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
             S P  L    +  L  +   I  +     + G   ++     +   +  F+   D   
Sbjct: 140 FDSDPNELHTNIKVLLGQSSDFITSLLNSLLKSGKSIVNIISLFVVTPVVTFYILLDWPH 199

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + + +DS          + +   + + +     G   + +           + G+   + 
Sbjct: 200 MVEVVDSWIPRSHLTTVRSLFHEMDRAVAGFVRGQGTVCLILAGYYAIGLTITGLNFALL 259

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLI----KGNIFNATCLFLWGAIELFIVDKTLRPF 299
           +G+   +++ IP    +    +SI +        N      + +   I  FI    L+P 
Sbjct: 260 IGMFVGLISFIPYIGTMIGFILSIGVAWVQFYPDNWGWVIIVMIVFFIGQFIEGYILQPK 319

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           LVG  + L  +   F L       G  G+ +     A+I V+ +
Sbjct: 320 LVGSSVGLHPVWLMFALFAFGSLFGFTGMLVAVPAAAIIGVLVR 363


>gi|307709108|ref|ZP_07645567.1| conserved hypothetical protein [Streptococcus mitis SK564]
 gi|307620054|gb|EFN99171.1| conserved hypothetical protein [Streptococcus mitis SK564]
          Length = 369

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/311 (13%), Positives = 103/311 (33%), Gaps = 6/311 (1%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L    + + + PI +      + +     ++   +++   ++ +++L    + ++ 
Sbjct: 42  MIPFLLGGFLYYLTNPIVNFLQKYFKINRIIGILLTLCALVWGLVIGVVYLLPILVNQLT 101

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L++           +   LS  P            +        LS   +  N ++ + 
Sbjct: 102 SLIATSQTIYSRLQDLIMDLSTYPAFQNLD------IQATIQQLNLSYVDILQNILNSVT 155

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                         L II   + L +F  DG      L+         +   + + +   
Sbjct: 156 NSVGSVLSALFSTVLIIIMTPVFLVYFLLDGNKFLPMLERTVLKRDKLHIAGLLKNLNAT 215

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           I     G+ I AI  G +    Y + G+   +   + + +  +IP   P       I   
Sbjct: 216 IARYISGVAIDAIIIGCLAFIGYSVIGLKYALVFAIFSGLANLIPYVGPSIGLIPMIIAN 275

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +  +        ++  I   +    L P +VGG +K+  +     L+      G++G+ +
Sbjct: 276 VFTDPHRMLIAVVYMLIIQQVDGNILYPRIVGGVMKVHPITILVLLLLSSNIYGVIGMIV 335

Query: 331 GPVLMALIAVI 341
                +++  I
Sbjct: 336 AVPTYSILKEI 346


>gi|153006305|ref|YP_001380630.1| hypothetical protein Anae109_3462 [Anaeromyxobacter sp. Fw109-5]
 gi|152029878|gb|ABS27646.1| protein of unknown function UPF0118 [Anaeromyxobacter sp. Fw109-5]
          Length = 418

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 51/376 (13%), Positives = 125/376 (33%), Gaps = 23/376 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLK-GFFAPVLSALIIGFTSWPIYSSFISKKEES----ST 60
              Q +    +++ ++ +++ +      P + A +  +   P+ S     +         
Sbjct: 18  PRAQLLALTAVIWALVAAIFVIAWPVLLPFVLAALAAYVIDPLISRLARTRVGGHAVPRW 77

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP--VPRWLSDIPG--- 115
              V+  + +  L  +  + +F     E    + ++        P  +  W   I     
Sbjct: 78  GAVVVVYLGIGALAYLAGVSIFPQIYREAVRGLVELRDFLASVTPEKIDAWARAIDAFLE 137

Query: 116 ------------GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY 163
                       G      ++  L+   +  +   +      +  +  F+          
Sbjct: 138 QYGIPVDVLPYEGPRQGARFSVDLAAGIAAALRDASESMRGRVGDVVAFSRAILAGTFQA 197

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
               I + +   F   D   I +  ++L        ++++   +   +     G   I +
Sbjct: 198 MFFSILLFMLTAFISMDAPRIVRFFETLFPTQARDDFRRLLHGIDSGLAGVVRGQLTIML 257

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLF 282
             G++      +  VP   ALG +  I+ ++P  G  +S   + +  L  G +  A    
Sbjct: 258 VNGVLTLIGLLVIQVPFAFALGALATILYVVPIFGTILSSIPIVLLALTAGGLSKALLAL 317

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            W  +   +    L P ++G   K+  +     LV G RT GL+G  +   + +++  I+
Sbjct: 318 GWILVIHALEAYVLNPKIMGDASKIHPVLIVLALVIGERTWGLVGALLAVPVASVVVAIF 377

Query: 343 KESIMAIKENKEKISS 358
           +     + E  E+ + 
Sbjct: 378 RFLHRKLAELDERAAQ 393


>gi|22537260|ref|NP_688111.1| hypothetical protein SAG1102 [Streptococcus agalactiae 2603V/R]
 gi|22534128|gb|AAM99983.1|AE014242_12 membrane protein, putative [Streptococcus agalactiae 2603V/R]
          Length = 377

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 61/336 (18%), Positives = 124/336 (36%), Gaps = 19/336 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI----ATVSVMCLFIVPLLFLF 82
           +  F      A II      +Y     K  + S  L  I    + +     FI  +++LF
Sbjct: 39  IFPFLMGAGIAYIINIVMS-VYERLYIKLFKGSRLLMAIKRSVSMILSYATFIGLIVWLF 97

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ---SLKILSET 139
              + ++   +S +++ +   +   + ++++      SE+     +      +L   S+ 
Sbjct: 98  SIVIPDLISSLSSLLVIDTGALA--KLVNNLNENKQISEVLNYMGTDKDLVSTLSGYSQQ 155

Query: 140 FLKTNGIDF--IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            LK        +    S      L+  +S IF I  L     +   + +Q + L +    
Sbjct: 156 ILKQVLSVLTNLLTSVSSIAATLLNVFVSFIFSIYVL----ANKEQLGRQFNLLIDTYLG 211

Query: 198 AYWKKI---SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           +  K       I+ +     F+  T+ A+  G +      +   P  + +GV+ A  A+I
Sbjct: 212 STGKTFHYVRHILHQRFHGFFVSQTLEAMILGSLTVIGMLIFQFPYALTVGVLVAFTALI 271

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P         +   L+   ++  A    L+  +        + P +VGG I LP +    
Sbjct: 272 PVVGAYIGVTIGFILIATESLTEAFLFVLFLILLQQFEGNVIYPKVVGGSIGLPSMWVLM 331

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            +  G    G+LG+ +   + A I  I K+ I+  +
Sbjct: 332 AITIGGALWGILGMLLAVPVAATIYQIVKDHIIKRQ 367


>gi|34581399|ref|ZP_00142879.1| putative permease perM homolog [Rickettsia sibirica 246]
 gi|28262784|gb|EAA26288.1| putative permease perM homolog [Rickettsia sibirica 246]
          Length = 351

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 55/350 (15%), Positives = 118/350 (33%), Gaps = 7/350 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N   I   + +   +     +     P   A II +   P      SK + S+ F + I
Sbjct: 1   MNRTVIFWLVFLGFFISGFMLISDAVKPFFIAFIISYLLQPAIGFIASKFKISNKFASSI 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + +F + L  L      ++   ++ +   N +          +P  M        
Sbjct: 61  IYLIFLSIFFLSLTILVPIIYGQIFTFINNIPKYNNYLQAEI-----LPPIMVKIYSIEP 115

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            ++      + +        +  I     R+ +I ++  +  + + I LF+F RD   I 
Sbjct: 116 DIADKIKNSLSNFINSIFTILGSIANNFWRYTIITINIFVLFLLIPIILFYFLRDWAKII 175

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             + SL          +I   +  ++ +   G   I +        A+ + G+   + LG
Sbjct: 176 ANMKSLLPIKTRPKILEILSAINNLLSAYIRGQLNICLLLSTYYSIAFTVIGIDLALLLG 235

Query: 246 VITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           ++T  + +IP           + I  L  G       + +   +          P ++G 
Sbjct: 236 ILTGFLVIIPFLGTFISFLLTLMIGYLTFGVTTKLLYIMIIYLVGNICESYIFTPKIIGD 295

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            I L  L   F +       G++G+F    +  +  ++    I   K +K
Sbjct: 296 KIGLHPLWIIFSIFACGSLFGIIGIFFAIPIAGITKILLLNLIKFYKSSK 345


>gi|313903596|ref|ZP_07836986.1| protein of unknown function UPF0118 [Thermaerobacter subterraneus
           DSM 13965]
 gi|313466149|gb|EFR61673.1| protein of unknown function UPF0118 [Thermaerobacter subterraneus
           DSM 13965]
          Length = 458

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 49/314 (15%), Positives = 109/314 (34%), Gaps = 5/314 (1%)

Query: 17  MFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             ++ ++ + L  F      +  A ++ F   P  S         +    ++    V  L
Sbjct: 37  AGVLWLAWWVLSHFGRTLTLLGLAGVLAFLLEPAVSFLERGMRSRALAALLLYLAFVALL 96

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +  +++L      + +EL   V    Q        L      +            PQ L
Sbjct: 97  ALG-VVYLAGPIKEQAQELFWSVPRYRQQVAEAVPVLQKYMELLREFLARYGVSVEPQDL 155

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                  +  +    +    +    I      +++ ++I++ +   DG  +++Q+     
Sbjct: 156 AGQFLQRVAGSTNRILAGLTAVVTGIGTTLANAVLVLVISI-YLVVDGSGLNRQMLGYLP 214

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
             +    ++   +  +V      G  ++ +  G+V+G    L G+P    LGVI  +M +
Sbjct: 215 ARYRRPVRRAQAVALRVFGGYLRGQLLLGLIIGVVVGIGLSLLGIPYPALLGVIAGVMEL 274

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +P    +     +I + +         + L+  +   +    L P + G  + L  L T 
Sbjct: 275 LPIVGAVLGAIPAILVALFQPWPAVLYVTLFFIVVQQVEGNLLVPRITGQAVGLHPLATL 334

Query: 314 FGLVGGVRTMGLLG 327
             L+ G    G+LG
Sbjct: 335 LALLAGYEVAGILG 348


>gi|315637759|ref|ZP_07892961.1| acid membrane antigen A [Arcobacter butzleri JV22]
 gi|315477980|gb|EFU68711.1| acid membrane antigen A [Arcobacter butzleri JV22]
          Length = 348

 Score = 79.9 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 57/349 (16%), Positives = 125/349 (35%), Gaps = 24/349 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + ++   +     F   +  ++++   +  +      K ++       + T+++  LF +
Sbjct: 12  ILLLFFMVELFNPFLKAIFVSVLLTIATSSLTLHLEHKLKKR-LVATSVMTIALAALFFL 70

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
           P+L+          ++  +V++ N   I +               L          L  +
Sbjct: 71  PILYCILSFATFFNQVDQQVLVKNLDEIKL-----------LVHNLSMDFTFLNDFLNNI 119

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           +        +  I   ++  G   + +   II +++  FFF      I+  +  L   + 
Sbjct: 120 TSKIDVGKTVQDIVSISANLGKNSVKFMFDIILILVFFFFFTLYTTQIATFIRDLLP-IK 178

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                 +      V+        + AI EG + G      G    +  GV+    ++IP 
Sbjct: 179 KEDSIILFHESSSVMTVVLYSTLVTAIFEGFLFGFFLTFFGYDG-LLFGVLYGFASLIPV 237

Query: 257 -GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI-VDKTLRPFLVG--------GPIK 306
            G  I +  ++IY     +  NA  + ++  + + I  D  ++P ++          P  
Sbjct: 238 VGGVIMWLPIAIYEASINSFTNALIIAIYSIVVISIIADTFIKPMIINYINKKIIKTPTN 297

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +  L  FF +V G+ T G  G+ IGP +++L   I         + KE 
Sbjct: 298 VNALLIFFSIVAGLSTFGFWGMIIGPAMVSLFISIMNLLKKYSDDFKES 346


>gi|76787648|ref|YP_329808.1| hypothetical protein SAK_1187 [Streptococcus agalactiae A909]
 gi|76562705|gb|ABA45289.1| membrane protein, putative [Streptococcus agalactiae A909]
          Length = 377

 Score = 79.9 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 61/344 (17%), Positives = 126/344 (36%), Gaps = 19/344 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI----ATVSVMCLFIVPLLFLF 82
           +  F      A II      +Y     K  + S  L  I    + +     FI  +++LF
Sbjct: 39  IFPFLMGAGIAYIINIVMS-VYERLYVKLFKGSRLLMAIKRSVSMILSYATFIGLIVWLF 97

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ---SLKILSET 139
              + ++   +S +++ +   +   + ++++      SE      +      +L   S+ 
Sbjct: 98  SIVIPDLISSLSSLLVIDTGALA--KLVNNLNENKQISEALNYMGTDKDLVSTLSGYSQQ 155

Query: 140 FLKTNGIDF--IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            LK        +    S      L+  +S IF I  L     +   + +Q + L +    
Sbjct: 156 ILKQVLSVLTNLLTSVSSIAATLLNVFVSFIFSIYVL----ANKEQLGRQFNLLIDTYLG 211

Query: 198 AYWKKI---SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           +  K       I+ +     F+  T+ A+  G +      +   P  + +GV+ A  A+I
Sbjct: 212 STGKTFHYVRHILHQRFHGFFVSQTLEAMILGSLTVIGMLIFQFPYALTVGVLVAFTALI 271

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P         +   L+   ++  A    L+  +        + P +VGG I LP +    
Sbjct: 272 PVVGAYIGVTIGFILIATESLTEAFLFVLFLILLQQFEGNVIYPKVVGGSIGLPSMWVLM 331

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            +  G    G+LG+ +   + A I  I K+ I+  +  + +  +
Sbjct: 332 AITIGGALWGILGMLLAVPVAATIYQIVKDHIIKRQTLRNRART 375


>gi|146302325|ref|YP_001196916.1| hypothetical protein Fjoh_4598 [Flavobacterium johnsoniae UW101]
 gi|146156743|gb|ABQ07597.1| protein of unknown function UPF0118 [Flavobacterium johnsoniae
           UW101]
          Length = 363

 Score = 79.9 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 52/351 (14%), Positives = 119/351 (33%), Gaps = 18/351 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   +++ I+L  LY ++     +  +LI+   + P+     +K + S++  A    +
Sbjct: 13  RALATILVIGIVLYFLYEIQTVIVYLCVSLILCLIANPLVLFLKNKLKFSNSMAAATTII 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + L +  +L      + +   L           +      +         E +     
Sbjct: 73  FFIFLIVGFILLFVPLIISQANNLA---------LLDTAHLQTKFMETEKHLEEYFNIQH 123

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  I            +  RF +       D  + ++ +    FFF +D      Q 
Sbjct: 124 IDLNKVIKDSKLTSVLDFSYFTRFINSIINFMADMGMGLVSVFFITFFFIKDQTIFKDQA 183

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +               +  ++   F+G+ +  I   ++      + G  +   +  + 
Sbjct: 184 RRILPDSNEDKILNSITKINHLLTRYFIGLLLQLIVVFILYLIVLLIFGNKNAFVIAFLC 243

Query: 249 AIMAMIPGGAPISFTAVSIYLLI--------KGNIFNATCLFLWGAIELFIVDKTL-RPF 299
           AI+ +IP   PI  T ++  L +        +  I   T   + G + +  +D  + +P 
Sbjct: 244 AILNIIPYLGPIIGTTLAAILTMISMIGQDFQSEILPKTIYVVIGFLVVQAIDNNISQPI 303

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +    +    L  F  ++    T G++G+ I      +I VI KE     K
Sbjct: 304 ISSKSVNSHPLEIFLIILISGITFGIVGMIIAVPAFTMIKVILKEFFPNNK 354


>gi|297561747|ref|YP_003680721.1| hypothetical protein Ndas_2803 [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296846195|gb|ADH68215.1| protein of unknown function UPF0118 [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 441

 Score = 79.9 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 50/313 (15%), Positives = 107/313 (34%), Gaps = 14/313 (4%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           PV+ A+ +     PI +    +K         IA +  + +F   +  +    +     L
Sbjct: 91  PVILAVFLTALLMPIANGL-RRKGLGRGLSTTIALLVGLIVFGGVISLIVTPAIQGFGPL 149

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
           V  V  A          L DI        L+T  +    +        + T   D +   
Sbjct: 150 VDSVTSAITE-------LQDIRLPFVDPALFTDMIDDAWAQIQS----MITENQDQLLSG 198

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
           A       +   + I+ +I    +F   G  +   L +L         +    +   V+ 
Sbjct: 199 AWTATSAVISVLVGIVLIIALTVYFVHSGDQLMDWLVTLLPARSRPGMRHAGDVAYGVMG 258

Query: 213 STFLGMTIIAIGEGLVLGSAYWLA-GVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLL 270
               G+  +   + + +G A  +   +   + L V+T + A +P  GA ++    ++   
Sbjct: 259 RYVRGVAAVGFFDAVGIGIALVIFLDINLAIPLIVLTFVGAFLPIIGAFLTGLLAALVAF 318

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +      A  +     +   +      P + G  + LP      G+  G    G+ G+F+
Sbjct: 319 VTEGWVVALIIVGAVLLVQQLESNVFAPRIYGASLDLPSPVVLIGISVGAVVGGIPGMFL 378

Query: 331 GPVLMALIAVIWK 343
              ++A++A + +
Sbjct: 379 STPVVAVLAALLR 391


>gi|88811527|ref|ZP_01126782.1| hypothetical protein NB231_12349 [Nitrococcus mobilis Nb-231]
 gi|88791416|gb|EAR22528.1| hypothetical protein NB231_12349 [Nitrococcus mobilis Nb-231]
          Length = 373

 Score = 79.9 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 121/358 (33%), Gaps = 11/358 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             + +PQ +   +++   L  + F+    APV+++L+I +    +  S    +      +
Sbjct: 10  RHLNDPQVVALALVLLGGLGIILFMGDMLAPVIASLVIAYLLEDLVQSLERYRVPRRMGV 69

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++  + +  + +V    L      +  +LV  +     HG      +  +P        
Sbjct: 70  VLVFFLFIAVVLLV-FFALIPLISRQFAQLVENLPDILDHGQMA---ILRLPEKYPQFFS 125

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             +  +  + L+  S       G + +   + +  ++     + ++ +   +FFF  D  
Sbjct: 126 VDQVKTLMEELRSESLQI----GRNVLASISFQSVVMLFMGAIYLVLVPFMVFFFLMDKE 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I   L      +  +    I   V   I S   G  +  +  G+V    + L G+    
Sbjct: 182 QIQAWLSRFLP-VHRSLIATIWCEVDAQIGSYVRGKLLEIVIVGVVTYVTFALLGLQFAA 240

Query: 243 ALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L V T +  +IP  G A ++     I     G       + +   I   +    L P L
Sbjct: 241 LLAVATGLSVIIPYVGAAVVTAPVAVIGYFQFGPSSEFVWVLIAYGIIQALDGNVLVPLL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
               +KL  +     ++      G  G+F    L  LI  I         E   K + 
Sbjct: 301 FSEIVKLHPVAIIIAILVFGGIWGFWGVFFAIPLATLIRAIILAWPGFADEADSKDAH 358


>gi|293399736|ref|ZP_06643882.1| putative membrane protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306136|gb|EFE47379.1| putative membrane protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 390

 Score = 79.9 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 44/322 (13%), Positives = 102/322 (31%), Gaps = 2/322 (0%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            LK F   ++ A +             +   +    +A + ++ ++   I  + ++    
Sbjct: 47  LLKPFIYGIMMAFVFNLPMKYFMKKLPASLGKGKRAVAALLSLIIIIGVITFIFWIVMPQ 106

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           ++     ++  +      +     +          E   K +             +  NG
Sbjct: 107 VIHSVTTLANALPGYLEEVQKN--IQTAIENKQIPEEVLKQIETYAMDIQKMAVNIVKNG 164

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +   AS F     +  ++++  +       R      + L +        Y  K++ 
Sbjct: 165 LPHLIDMASGFASSIANIFMALVIAVYLTISKNRLITQAKEFLYAFTSKRVNEYLLKVAH 224

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
           +      +   G  + AI  G++      +   P    L VI     +IP    I    +
Sbjct: 225 LTNVTFANFVTGQLVEAIIIGILCYIGCLILQFPYAPILSVIIGCTNIIPIFGAIFGVGL 284

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           S  L+   +        L+G          + P +VG  + L  L   F +  G    G 
Sbjct: 285 SALLVAFVDPLQGIFFILFGICLQQFESNLIYPRVVGNTVGLSGLWVLFAITVGGGFFGF 344

Query: 326 LGLFIGPVLMALIAVIWKESIM 347
            G+ +G  + ++I  + +E + 
Sbjct: 345 AGMLLGLPIFSIIYALLREEMH 366


>gi|269797532|ref|YP_003311432.1| hypothetical protein Vpar_0468 [Veillonella parvula DSM 2008]
 gi|269094161|gb|ACZ24152.1| protein of unknown function UPF0118 [Veillonella parvula DSM 2008]
          Length = 373

 Score = 79.9 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 51/335 (15%), Positives = 113/335 (33%), Gaps = 11/335 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEES---------STFLAVIATVSVMCLFIVPLLFL 81
           F P++    I F    +   +                   L+++ +   + + +  +  L
Sbjct: 41  FVPLIVGACIAFVLDILVVRYERWLWPKCDSGWKYKIRRPLSLLLSFVTISVIVYFIARL 100

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               ++    ++  V  + Q       W+  I   +  +   T   +             
Sbjct: 101 ALPQLIHSMSII--VAASPQLYTDFQTWMQHITETIPMASNQTIIDALSGENLAKYTREW 158

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            T G  +I           L+  L +IF +  L    R      + L +     +     
Sbjct: 159 GTKGGTYIVNAMGTVLSWTLNIGLGLIFAVYMLLDKERLMLQGKRILKAYASDEWVNRVS 218

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            ++R+  +   + F+G  I A+  G+++G   WL  +     +  +  +  +IP      
Sbjct: 219 YVTRVAVQTFSNFFVGQFIDALVLGVMVGITLWLFNIEYATTIACVIGLTGLIPLLGIYV 278

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
              +   +L+  +  +A    +   +   I    + P +VG  + LP L  F  ++ G  
Sbjct: 279 GGIIGAVMLLTVSPMDALIYVIILEVLHQIESNFIYPKIVGNSVGLPGLWVFAAVIVGGS 338

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            MG+ G+ IG  L+A    +    +     + E +
Sbjct: 339 LMGVTGMLIGVPLVATCYKLIMTDVDGRLASNEGL 373


>gi|168490308|ref|ZP_02714507.1| membrane protein [Streptococcus pneumoniae SP195]
 gi|183571357|gb|EDT91885.1| membrane protein [Streptococcus pneumoniae SP195]
          Length = 369

 Score = 79.9 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 42/316 (13%), Positives = 108/316 (34%), Gaps = 6/316 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L     P L    + + + PI +      + +     +I   +++   ++ +++L    
Sbjct: 37  VLNTIMIPFLLGGFLYYLTNPIVTFLNKVCKLNRLLGILITLCTLIWGMVIGVVYLLPIL 96

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  L   ++ +      V   + D+        L  +      +L  +    +  N 
Sbjct: 97  INQLSSL---IISSQTIYSRVQDLIIDLSNYPALQNLDVEATIQQLNLSYVD---ILQNI 150

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           ++ +           +   L +I   + L +F  DG      L+         +   + +
Sbjct: 151 LNSVSNSVGSVLSALISTVLILIMTPVFLVYFLLDGHKFLPMLERTILKRDRLHIAGLLK 210

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   I     G++I AI  G +    Y + G+   +   + + +  +IP   P      
Sbjct: 211 NLNATIARYISGVSIDAIIIGCLAYIGYSIIGLKYALVFAIFSGVANLIPYVGPSIGLIP 270

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            I   I  +        ++  +   +    L P +VG  +K+  +     L+      G+
Sbjct: 271 MIIANIFTDPHRLLIAVIYMLVVQQVDGNILYPRIVGSVMKVHPITILVLLLLSSNIYGV 330

Query: 326 LGLFIGPVLMALIAVI 341
           +G+ +     +++  I
Sbjct: 331 VGMIVAVPTYSILKEI 346


>gi|220931616|ref|YP_002508524.1| Sporulation integral membrane protein YtvI [Halothermothrix orenii
           H 168]
 gi|219992926|gb|ACL69529.1| Sporulation integral membrane protein YtvI [Halothermothrix orenii
           H 168]
          Length = 355

 Score = 79.9 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 56/337 (16%), Positives = 121/337 (35%), Gaps = 6/337 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             ++ +IL+  +F+  +F+P + A I+     P+      K   +     +I  V ++ +
Sbjct: 14  VFVIGVILLKYFFI--YFSPFIIAAILASLINPVVDRLDEKIPVNRGLAVIIVLVLLISI 71

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            ++ ++       LE+  L+  +   +  G      +          +      S   +L
Sbjct: 72  LVLIIILGVSQIYLELNRLLQNLPDYSTFGSKFHWIVQQNYRLQEFIQELDISPSVKDAL 131

Query: 134 KILSETFLKTNGIDFIPRF--ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
               +          +                   +    IA +F  RD   I+Q +  L
Sbjct: 132 NNNLQMIYNAIKNGLVKGINGTLNLLGKLPMLLTILFLSFIATYFISRDKDKINQFIMKL 191

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                     K+ + +            I+    G++ G    + G    + +G+ +A++
Sbjct: 192 FPGELKPKVFKVEKELINSAMGFIRAELILITITGIISGVGLAIIGNHYALIIGISSALL 251

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            +IP  G  + F    IY +I GN+  A  L +   +   +        ++G  + +  L
Sbjct: 252 DLIPIIGPALIFIPWIIYNMIMGNLSYAFGLLVVYTLMAAVRQGA-EGKVMGDNLGVHPL 310

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            T   L  G R MG++G  +GP ++ +I  +    I+
Sbjct: 311 ATMIALYVGYRVMGMIGFIMGPAILVIIKALINAEII 347


>gi|197302448|ref|ZP_03167503.1| hypothetical protein RUMLAC_01176 [Ruminococcus lactaris ATCC
           29176]
 gi|197298346|gb|EDY32891.1| hypothetical protein RUMLAC_01176 [Ruminococcus lactaris ATCC
           29176]
          Length = 418

 Score = 79.9 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 49/324 (15%), Positives = 105/324 (32%), Gaps = 10/324 (3%)

Query: 16  IMFIILVSLYF------LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           ++F IL +  F      L GF  P +   I+   + P+ +    + +      + +  + 
Sbjct: 14  LLFSILATAAFIVIGIRLIGFLMPFVIGWIVASIATPLVNWLEKRMKIVKKLGSALIVIL 73

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS--ELWTKHL 127
           V+   I+   F     + E+  L+       +        +     G++    E      
Sbjct: 74  VLAAIILVSYFAVSRLVTEVTGLIRDFPDLYEQTETGLEKIGQTLSGVFVRLPEGIQNGW 133

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +            L +   +     A           +S I MI++ +FF      +   
Sbjct: 134 TSLVENLDDYMGNLMSKVSEPTVTAAGNAAKKVPYMLVSFIVMIMSAYFFIVQREDVIHW 193

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  +           +   +   +   F     I     L+L +      +   V +  +
Sbjct: 194 MKGIAPEAVTKRMAMVMDNLKYAVGGYFKAQFKIMGIVFLILLAGLGFLKIHYFVLIAFL 253

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A +  +P  G   +    ++Y +  G    A  L +   +    V + ++P LVG  + 
Sbjct: 254 IAFLDFLPFFGTGTAMIPWAVYEVFMGEYKVAAALLIIYVVTQA-VRQLIQPKLVGDSVG 312

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFI 330
           L  L T   L  G R  G++ + +
Sbjct: 313 LNPLVTLLLLYIGYRVGGVIWMIL 336


>gi|169833984|ref|YP_001694326.1| membrane protein [Streptococcus pneumoniae Hungary19A-6]
 gi|172079628|ref|ZP_02709700.2| membrane protein [Streptococcus pneumoniae CDC1873-00]
 gi|183603137|ref|ZP_02710328.2| membrane protein [Streptococcus pneumoniae CDC1087-00]
 gi|183603448|ref|ZP_02717170.2| membrane protein [Streptococcus pneumoniae CDC3059-06]
 gi|183603463|ref|ZP_02715105.2| membrane protein [Streptococcus pneumoniae CDC0288-04]
 gi|221231652|ref|YP_002510804.1| hypothetical protein SPN23F_07960 [Streptococcus pneumoniae ATCC
           700669]
 gi|225854381|ref|YP_002735893.1| membrane protein [Streptococcus pneumoniae JJA]
 gi|225856539|ref|YP_002738050.1| membrane protein [Streptococcus pneumoniae P1031]
 gi|225858673|ref|YP_002740183.1| membrane protein [Streptococcus pneumoniae 70585]
 gi|225861234|ref|YP_002742743.1| membrane protein [Streptococcus pneumoniae Taiwan19F-14]
 gi|307127576|ref|YP_003879607.1| membrane protein [Streptococcus pneumoniae 670-6B]
 gi|168996486|gb|ACA37098.1| membrane protein [Streptococcus pneumoniae Hungary19A-6]
 gi|172042061|gb|EDT50107.1| membrane protein [Streptococcus pneumoniae CDC1873-00]
 gi|183571061|gb|EDT91589.1| membrane protein [Streptococcus pneumoniae CDC1087-00]
 gi|183574547|gb|EDT95075.1| membrane protein [Streptococcus pneumoniae CDC0288-04]
 gi|183576959|gb|EDT97487.1| membrane protein [Streptococcus pneumoniae CDC3059-06]
 gi|220674112|emb|CAR68631.1| putative membrane protein [Streptococcus pneumoniae ATCC 700669]
 gi|225721093|gb|ACO16947.1| membrane protein [Streptococcus pneumoniae 70585]
 gi|225722598|gb|ACO18451.1| membrane protein [Streptococcus pneumoniae JJA]
 gi|225725554|gb|ACO21406.1| membrane protein [Streptococcus pneumoniae P1031]
 gi|225726469|gb|ACO22320.1| membrane protein [Streptococcus pneumoniae Taiwan19F-14]
 gi|301794007|emb|CBW36405.1| putative membrane protein [Streptococcus pneumoniae INV104]
 gi|301799865|emb|CBW32440.1| putative membrane protein [Streptococcus pneumoniae OXC141]
 gi|301801697|emb|CBW34403.1| putative membrane protein [Streptococcus pneumoniae INV200]
 gi|306484638|gb|ADM91507.1| membrane protein [Streptococcus pneumoniae 670-6B]
 gi|327390226|gb|EGE88569.1| hypothetical protein SPAR5_0835 [Streptococcus pneumoniae GA04375]
 gi|332077287|gb|EGI87749.1| hypothetical protein SPAR148_0823 [Streptococcus pneumoniae
           GA17545]
          Length = 343

 Score = 79.9 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 42/316 (13%), Positives = 108/316 (34%), Gaps = 6/316 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L     P L    + + + PI +      + +     +I   +++   ++ +++L    
Sbjct: 11  VLNTIMIPFLLGGFLYYLTNPIVTFLNKVCKLNRLLGILITLCTLVWGMVIGVVYLLPIL 70

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  L   ++ +      V   + D+        L  +      +L  +    +  N 
Sbjct: 71  INQLSSL---IISSQTIYSRVQDLIIDLSNYPALQNLDVEATIQQLNLSYVD---ILQNI 124

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           ++ +           +   L +I   + L +F  DG      L+         +   + +
Sbjct: 125 LNSVSNSVGSVLSALISTVLILIMTPVFLVYFLLDGHKFLPMLERTILKRDRLHIAGLLK 184

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   I     G++I AI  G +    Y + G+   +   + + +  +IP   P      
Sbjct: 185 NLNATIARYISGVSIDAIIIGCLAYIGYSIIGLKYALVFAIFSGVANLIPYVGPSIGLIP 244

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            I   I  +        ++  +   +    L P +VG  +K+  +     L+      G+
Sbjct: 245 MIIANIFTDPHRLLIAVIYMLVVQQVDGNILYPRIVGSVMKVHPITILVLLLLSSNIYGV 304

Query: 326 LGLFIGPVLMALIAVI 341
           +G+ +     +++  I
Sbjct: 305 VGMIVAVPTYSILKEI 320


>gi|307704895|ref|ZP_07641786.1| conserved hypothetical protein [Streptococcus mitis SK597]
 gi|307621509|gb|EFO00555.1| conserved hypothetical protein [Streptococcus mitis SK597]
          Length = 369

 Score = 79.9 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/311 (13%), Positives = 103/311 (33%), Gaps = 6/311 (1%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L    + + + PI +      + +     ++   +++   ++ +++L    + ++ 
Sbjct: 42  MIPFLLGGFLYYLTNPIVNFLQKYFKINRIIGILLTLCALVWGLVIGVVYLLPILVNQLT 101

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L++           +   LS  P            +        LS   +  N ++ + 
Sbjct: 102 SLIATSQTIYSRLQDLIVDLSTYPAFQNLD------IQATIQQLNLSYVDILQNILNSVT 155

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                         L II   + L +F  DG      L+         +   + + +   
Sbjct: 156 NSVGSVLSALFSTVLIIIMTPVFLVYFLLDGNKFLPMLERTVLKRDKLHIAGLLKNLNAT 215

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           I     G+ I AI  G +    Y + G+   +   + + +  +IP   P       I   
Sbjct: 216 IARYISGVAIDAIIIGCLAFIGYSVIGLKYALVFAIFSGLANLIPYVGPSIGLIPMIIAN 275

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +  +        ++  I   +    L P +VGG +K+  +     L+      G++G+ +
Sbjct: 276 VFTDPHRMLIAVVYMLIIQQVDGNILYPRIVGGVMKVHPITILVLLLLSSNIYGVIGMIV 335

Query: 331 GPVLMALIAVI 341
                +++  I
Sbjct: 336 AVPTYSILKEI 346


>gi|260889294|ref|ZP_05900557.1| sporulation integral membrane protein YtvI [Leptotrichia hofstadii
           F0254]
 gi|260860705|gb|EEX75205.1| sporulation integral membrane protein YtvI [Leptotrichia hofstadii
           F0254]
          Length = 378

 Score = 79.9 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 56/339 (16%), Positives = 117/339 (34%), Gaps = 9/339 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             ++ +++   + L  F  P   AL +   + P       K + S     +I+ V+ + +
Sbjct: 18  IALILLVVFIAFKLGIFLFPFTIALFLSILTRPFTRFLEKKLKLSKKLSTIISIVTFLII 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           F   + +     + E+ +L   +   ++  I    W  ++         +    +   + 
Sbjct: 78  FFGAIGWGSLKLISEIYKLSQNLNNYSE--IAQKLWSDNMTKIDTYLGNFPSGFTRQVND 135

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            I S     +  +    +    F        L I   I+A FF   D   I   L+    
Sbjct: 136 TINSFISSGSARLGIFIKGLINFITSIPTLILYICITILATFFISLDRDEIVAFLEQQLP 195

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL-----VLGSAYWLAGVPSHVALGVIT 248
             +      I   +  V+ S      I+           +   ++    VP  + + ++ 
Sbjct: 196 KSWLDKVFNIKTDMFTVLGSYIKAQIILMTICFFELLIWLNLLSFLKLNVPYPLLMSILI 255

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I+  +P  GA       +I      +I     L +     L  V + L P LV   + +
Sbjct: 256 CIIDTLPILGAGTILIPWAIISFALSDIKLGIMLIIIYLFVLS-VRQMLEPKLVSQNLGV 314

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
             L T   +  G +  G++G  IGPV+M ++  ++   +
Sbjct: 315 HPLITLISMYSGFKIFGVIGFLIGPVVMIILKNVFSREL 353


>gi|331003812|ref|ZP_08327304.1| hypothetical protein HMPREF0491_02166 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412004|gb|EGG91401.1| hypothetical protein HMPREF0491_02166 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 417

 Score = 79.9 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 55/328 (16%), Positives = 122/328 (37%), Gaps = 21/328 (6%)

Query: 31  FAPVLSALIIGFTSWPIYSS-----------FISKKEESSTFLAVIATVSVMCLFIVPLL 79
            + VL  +++ F   P+Y                K ++S  +  +IAT++ + + I+ + 
Sbjct: 52  VSSVLYGVVMAFLMAPVYDKITVWVSEILSSLFPKWKKSGKYAKMIATLACLVILILVVF 111

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            L    + E+   ++ V+     G+  +  WL DI       +L    + +   +     
Sbjct: 112 TLIMMIIPELANSITNVISYAPSGMENLENWLKDILNKNP--DLERLIIGNYLDISERLS 169

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYC---LSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            F  TN +  +  +        L+     ++II  ++ + +      ++  Q   +   +
Sbjct: 170 DFATTNVLPNVNTYVKNLSSGVLNALGVIVNIIIGMMVMMYLLNMKTTLVSQAKKIVYAV 229

Query: 196 FPAYWKKISRIVPKVIRSTF----LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                        + I++ F    +G  I +I  GL+      +  +P  + + V+  + 
Sbjct: 230 AGVRVGNEIVTEARYIKNMFEKFIVGKIIDSIIIGLINYIFMAVIHMPYALLISVVVGVT 289

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP   P      SI LL+  +   A    +W  +   +    + P ++G    LP   
Sbjct: 290 NVIPFFGPFIGAVPSIVLLLLISPITALQFAIWILVLQQVDGNIIGPKILGQTTGLPSFW 349

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIA 339
             F ++      G++G+ I     A+I 
Sbjct: 350 VLFSILLFGGLFGIVGMIIAVPTWAIIY 377


>gi|260772301|ref|ZP_05881217.1| permease PerM [Vibrio metschnikovii CIP 69.14]
 gi|260611440|gb|EEX36643.1| permease PerM [Vibrio metschnikovii CIP 69.14]
          Length = 357

 Score = 79.9 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 47/325 (14%), Positives = 106/325 (32%), Gaps = 14/325 (4%)

Query: 31  FAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
            AP+L A+++ +   WP+    + +     T   ++     + L +V L  +      ++
Sbjct: 39  IAPLLVAIVLAYLLEWPVTQ--LCRLGIPRTLSVLVIVSLFLGLMLVALFGIVPTIWQQV 96

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             L++ +         +  +++ +P             S   + K  + +  ++     +
Sbjct: 97  INLINDIPNMYN---DLQNFIASLPERYPELANLQIIESLVNNAKNKALSMGESVVKGSL 153

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
               S          + +I + + +FF  +D   +      +          K+   + +
Sbjct: 154 ASLVS-----LATLAVYLILVPMLVFFLLKDKQEMMSIASGVLPR-NRRLATKVWLEMNQ 207

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIY 268
            I +   G  +  +  G V    + +  +     L V      +IP  GA      V+I 
Sbjct: 208 QISNYIRGKVLEILIVGGVSYVTFAILDLRYSALLAVAVGFSVLIPYIGAAAVTIPVAIV 267

Query: 269 LLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            L +  +       L     + I+D   L P L    + L  +     ++      G  G
Sbjct: 268 GLFQWGLTPQYYTLLIAYFIIQILDGNVLVPILFSEAVNLHPVAIIIAVLVFGGLWGFWG 327

Query: 328 LFIGPVLMALIAVIWKESIMAIKEN 352
           +F    L  L+  +W        E 
Sbjct: 328 VFFAIPLATLVKAVWHALPSNDDET 352


>gi|239980705|ref|ZP_04703229.1| integral membrane protein [Streptomyces albus J1074]
          Length = 359

 Score = 79.9 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 45/333 (13%), Positives = 112/333 (33%), Gaps = 33/333 (9%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSW--------PIYSSFISKKEESSTF 61
            +  W ++ +++  + ++  +   +  A +I             P++   +  + +  + 
Sbjct: 8   RVAGWCVVLLLVTGVAWVAVWLCVLFRAAVIPVLLALLGTALLTPLHRRLLRMRVQR-SL 66

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A +   +V+ +       +    +    ++V+   LA Q                +   
Sbjct: 67  AAGLTCAAVLVVVGGATYIVVLALVDSGDQIVASAKLAAQD------------VAGFLGA 114

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                     + + L + F        I           +      +  ++ +FFF RDG
Sbjct: 115 DEASLDDLASNARELFDRFGGPAASGVISGLGLVAQAGAMG-----VLAVLLVFFFIRDG 169

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   L ++         + I R   + +     G T+IA+ +G++      L GVP  
Sbjct: 170 DRVVGSLRTMAPGHVGEITEAIGRRAYRAVEGFMRGTTMIALIDGVLTTIGLLLLGVPGA 229

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD----KTLR 297
             LG +  I A IP         +++ + +         +  W  + +F+V       L+
Sbjct: 230 AGLGALVFIGAYIPYLGAFVSGVLAVLVALAD---RGVVIAAWTLLVIFLVQMLEGNVLQ 286

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           P +    +++        +  G    G++G+ +
Sbjct: 287 PVIQSRTVQMHPAVVLVAITAGATVGGVIGVLL 319


>gi|296140794|ref|YP_003648037.1| hypothetical protein Tpau_3110 [Tsukamurella paurometabola DSM
           20162]
 gi|296028928|gb|ADG79698.1| protein of unknown function UPF0118 [Tsukamurella paurometabola DSM
           20162]
          Length = 414

 Score = 79.9 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 114/325 (35%), Gaps = 19/325 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFA---PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
            I    +  ++ V ++ +  F++   PV+ A+++    WP       +      F   +A
Sbjct: 37  SIRIVAVAAMLFVVVWVIGEFWSILLPVMLAVLLCTVLWPPVRWLRDR-----GFPPALA 91

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI-PVPRWLSDIPGGMWASELWTK 125
           T +V+ L +  L  +       +     ++  +   G+  +  W+   P  +   ++   
Sbjct: 92  TATVLLLALGILGGIIGAIAPSITSQSQQIADSAVAGVRKIQEWVQGPPLNLQDEQISNF 151

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S  Q L+  +E+         I               ++++ + +  FFF +DG    
Sbjct: 152 VNSITQKLQSSAES---------IASGVFTGVSAAGSVVVAVVMVAMLTFFFLKDGDKFL 202

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +          +  ++   +   +        ++++ + + +G    +  VP   AL 
Sbjct: 203 PWMRRHSGTPISEHLVELLSRIWATLGGFIRTQALVSLIDAVFIGLGLVILDVPLAYALA 262

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           VIT +   IP  GA ++     +  L+      A  + L       +    L P L    
Sbjct: 263 VITFLGGFIPIVGAFVAGALAVVVALVTNGFTTALLVLLVVIAVQQLEGNVLSPMLQSRS 322

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLF 329
           + L  +     +  G    G++G F
Sbjct: 323 MNLHPVVVLLAIAFGGTQFGIIGAF 347


>gi|224283818|ref|ZP_03647140.1| hypothetical protein BbifN4_08325 [Bifidobacterium bifidum NCIMB
           41171]
 gi|313140972|ref|ZP_07803165.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|313133482|gb|EFR51099.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 534

 Score = 79.9 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/338 (11%), Positives = 111/338 (32%), Gaps = 19/338 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGF----TSWPIYSSFISKKEESSTFLAVIATVS 69
            +I+    + ++   G  + ++  ++I         P+  S +          + ++ + 
Sbjct: 35  TVIVVFAAIFVWTSWGKISTIVLDVVISIFIALAVEPLVVSMVRH-GWKRGLASAVSLIG 93

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +  + +  L       + ++  +V  +       +                +  +  +  
Sbjct: 94  LAVIVMALLTLFGNMFVQQLISMVKGLPSIYTEIVDA------------VKQYTSFDMPK 141

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            ++L +     ++T+ I      A    M    + L+++ +++  ++    G  + + L 
Sbjct: 142 IENLGMEIFKNVQTSWITDFAGQALTTTMGVFSFLLNLLTVLMVTYYISAAGPKMRRSLC 201

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                     +     +V + I       +I+A            +  VP  + L +   
Sbjct: 202 QWLGPNTQRRFLLGWTVVQEQISGFLFSRSILAAINATCTAVFLEIIHVPYWLPLALFCG 261

Query: 250 IMA-MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           I++  +P  G  I      ++      ++    + ++  +   I +  L P +    + L
Sbjct: 262 IVSQFVPTVGTYIGGALPVLFAWGSNGLWYGVGVLVFIIVYQQIENLILSPKVSQRTMDL 321

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
                F  ++      G LG F+   + A +  I+K  
Sbjct: 322 NPCVAFLAVLVMGALFGALGAFLALPVTASMQAIFKVY 359


>gi|118443011|ref|YP_877809.1| permease [Clostridium novyi NT]
 gi|118133467|gb|ABK60511.1| permease [Clostridium novyi NT]
          Length = 368

 Score = 79.9 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 49/332 (14%), Positives = 115/332 (34%), Gaps = 9/332 (2%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +    L  +     P   A  I +   P+   F  K      F  +I  + ++    + +
Sbjct: 30  VFASGLSVVLSILTPFFWAFGIAYILNPLMIYFEKKFNLKRCFSILIVFLLLIGFITLTV 89

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
             +    +  + +L++ + +     I    W          S      L    +  + + 
Sbjct: 90  TIISPAIISNVGKLLNDMPIY---VIKTQAWFYATINKFNLSN--NTTLIQFANKGLTNI 144

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
           T   T+ +      A    + F    L +IF  I   +  +D  S  +   +    +F  
Sbjct: 145 TTTLTDSLKSFLNVALSNAIDFTSSFLKMIFGFIISVYILKDKESFQRNAKNFLYCIFKK 204

Query: 199 Y----WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                +      V  +     +G +I ++  G++      +   P  + + ++  I  MI
Sbjct: 205 ESIDSFLTFGNEVNVIFSQYIIGKSIDSLIIGILCAIGLAILQAPYVLLISLLVGITNMI 264

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P   P      ++ + +  +   A  + ++  I        L P ++G  + +       
Sbjct: 265 PYFGPFIGMIPAVLITVFYSPIKAVWVLIFIVILQQFDGWVLGPKILGDKVGVSPFWIIL 324

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            ++ G  T G+LG+F+G  ++A+I  + +  +
Sbjct: 325 AILVGGGTFGVLGMFLGVPIIAVIKTLLQRFV 356


>gi|186477237|ref|YP_001858707.1| hypothetical protein Bphy_2488 [Burkholderia phymatum STM815]
 gi|184193696|gb|ACC71661.1| protein of unknown function UPF0118 [Burkholderia phymatum STM815]
          Length = 358

 Score = 79.9 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 51/331 (15%), Positives = 120/331 (36%), Gaps = 8/331 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I   + + L+ L     P L   I+ +   P  +    ++       A +  +  + +  
Sbjct: 21  IALAVGILLWLLSPVLTPFLLGAILAYILQPGVAWMTRRRVPR-GLAASLMILFFVAIVT 79

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +  L +      E+ +L  +V +   H   +  WL+  P         +   +  + + +
Sbjct: 80  LLGLLVLGVIQKEVPQLKQQVPMFFSH---LHGWLT--PKLAVLGVSDSLDFASIRDMVM 134

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                       +          + +    +++ + + LF+   D  ++  ++       
Sbjct: 135 GQLEGSAQTVALYAWTSIRTSSNVMITVVGNVVMVPLVLFYLLYDWNAMLARVRGFIPRR 194

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           + A    ++R +  ++     G  ++     +   +A ++AG    + +G+ T +   IP
Sbjct: 195 WFAKTIHLARDMDHMLSQYLRGQLLVMGVLAVFYAAALYIAGFEIALPVGIFTGLAVFIP 254

Query: 256 --GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
             G A     A+   LL  GN +    + +   +   +    L P LVG  I L  L   
Sbjct: 255 YLGFATGLVLALLAALLQFGNWYGFGAVAVIYGVGQILESFFLTPRLVGERIGLHPLAVI 314

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           F L+   +  G  G+ +   + A+++V + E
Sbjct: 315 FALLAFGQLFGFFGVLLALPVSAMLSVAFHE 345


>gi|77408721|ref|ZP_00785453.1| membrane protein, putative [Streptococcus agalactiae COH1]
 gi|77413019|ref|ZP_00789221.1| putative membrane protein [Streptococcus agalactiae 515]
 gi|77160917|gb|EAO72026.1| putative membrane protein [Streptococcus agalactiae 515]
 gi|77172696|gb|EAO75833.1| membrane protein, putative [Streptococcus agalactiae COH1]
 gi|319745113|gb|EFV97438.1| permease [Streptococcus agalactiae ATCC 13813]
          Length = 377

 Score = 79.9 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 61/344 (17%), Positives = 126/344 (36%), Gaps = 19/344 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI----ATVSVMCLFIVPLLFLF 82
           +  F      A II      +Y     K  + S  L  I    + +     FI  +++LF
Sbjct: 39  IFPFLMGAGIAYIINIVMS-VYERLYIKLFKGSRLLMAIKRSVSMILSYATFIGLIVWLF 97

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ---SLKILSET 139
              + ++   +S +++ +   +   + ++++      SE      +      +L   S+ 
Sbjct: 98  SIVIPDLISSLSSLLVIDTGALA--KLVNNLNENKQISEALNYMGTDKDLVSTLSGYSQQ 155

Query: 140 FLKTNGIDF--IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            LK        +    S      L+  +S IF I  L     +   + +Q + L +    
Sbjct: 156 ILKQVLSVLTNLLTSVSSIAATLLNVFVSFIFSIYVL----ANKEQLGRQFNLLIDTYLG 211

Query: 198 AYWKKI---SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           +  K       I+ +     F+  T+ A+  G +      +   P  + +GV+ A  A+I
Sbjct: 212 STGKTFHYVRHILHQRFHGFFVSQTLEAMILGSLTVIGMLIFQFPYALTVGVLVAFTALI 271

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P         +   L+   ++  A    L+  +        + P +VGG I LP +    
Sbjct: 272 PVVGAYIGVTIGFILIATESLTEAFLFVLFLILLQQFEGNVIYPKVVGGSIGLPSMWVLM 331

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            +  G    G+LG+ +   + A I  I K+ I+  +  + +  +
Sbjct: 332 AITIGGALWGILGMLLAVPVAATIYQIVKDHIIKRQTLRNRART 375


>gi|309792249|ref|ZP_07686721.1| hypothetical protein OSCT_2672 [Oscillochloris trichoides DG6]
 gi|308225790|gb|EFO79546.1| hypothetical protein OSCT_2672 [Oscillochloris trichoides DG6]
          Length = 395

 Score = 79.9 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 48/364 (13%), Positives = 122/364 (33%), Gaps = 19/364 (5%)

Query: 9   QGIMRWMIMFIILVSLYFL----KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + + RW+++   ++ + +L     G   P +  +++ +   P+ +   ++         +
Sbjct: 14  RRVARWLLVLAAMLLIGWLLLSASGALTPFIIGIVLAYLLLPLVNRLNARMP--RWAAIL 71

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI-------PVPRWLSDIPGGM 117
           +  +  + + +    ++      ++ +L+S +    Q             + L+ +P  M
Sbjct: 72  VVYLGTLIVLVGFFAYIVPPLANQISQLISALPTIAQIQNWSELVMEEYQQILATVPESM 131

Query: 118 WAS-ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
            A  E     L +     + +       G+      +    +  + + L    +   LF+
Sbjct: 132 RAEVEQNIAVLVNNGVTTLRTNFVTYMQGLGTFLINSLLSVVNTVTFLLGFFLIPFWLFY 191

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
              D  +    LD +        +  +  I+   +     G  I+ +  G   G   ++ 
Sbjct: 192 VLMDQQAGVAALDRMLPDWLRPDFWGLVNIIDYDVSGYVRGQLILGLAVGSAAGVGLFIL 251

Query: 237 -----GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
                 V   + L V+     ++P   PI     ++ L    +      + +   +   +
Sbjct: 252 ELFGMKVDYILLLAVVAGFTELVPVIGPILGAVPAVILGFMDSPTTGIAVVILYILIQQL 311

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            +  L P +VG  + L        LV   +  GLLG  +   L A+   ++      + E
Sbjct: 312 ENNFLVPRIVGDSVGLHPAILMVLLVVCSQVFGLLGAILSAPLGAISRDLFSYLYGRLSE 371

Query: 352 NKEK 355
               
Sbjct: 372 PPSP 375


>gi|209524938|ref|ZP_03273483.1| protein of unknown function UPF0118 [Arthrospira maxima CS-328]
 gi|209494587|gb|EDZ94897.1| protein of unknown function UPF0118 [Arthrospira maxima CS-328]
          Length = 351

 Score = 79.9 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 60/353 (16%), Positives = 128/353 (36%), Gaps = 22/353 (6%)

Query: 3   ETMLNPQGIMRWMIMFII-LVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEES 58
           E  L+   ++R++++F      + F+  F       + A I  F               S
Sbjct: 10  ENFLSNSRLVRYLLLFAFGWAFIQFIAYFQTIIIVFVFAAIFAFLLNYPVQWLQKYT--S 67

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
            T   V+  ++ + L I  +  L    + E+++ VS+        + +   +  +     
Sbjct: 68  HTVAVVVVFLTSLLLLIGLVATLGLAIVSELQQFVSQAPDLLDSFVNLVDQIETLLKN-- 125

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                    ++ Q      +  LK    +      +  G I L   +  I +++  FF  
Sbjct: 126 ---------ANIQVDLDFLQEDLKQEVSNLFSFGTAAVGKI-LSGLVEFIIILVVTFFML 175

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            +G  +     S     FP+  + ++  +       F G  I+++  G      Y +   
Sbjct: 176 LNGEELWASFQSF----FPSNIEDLTLSLRNNFLGFFRGRLILSVFFGFSAFFVYLILQA 231

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + L  +  +  +IPG        +S  +++   I  +  + ++  +   I +  L P
Sbjct: 232 PYPLFLATLVGVFDLIPGVGATIGIILSAIIVLPKGILISLQVIVYCVLLQQIEENILMP 291

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            ++   + L  +  FF L+ G R  G LGLF+   + A+I          +K+
Sbjct: 292 RIMQNSVNLNPVIIFFALLLGARIAGFLGLFLSIPIAAVIVGFVNIKNAGVKQ 344


>gi|37519773|ref|NP_923150.1| hypothetical protein glr0204 [Gloeobacter violaceus PCC 7421]
 gi|35210764|dbj|BAC88145.1| glr0204 [Gloeobacter violaceus PCC 7421]
          Length = 368

 Score = 79.9 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 54/360 (15%), Positives = 124/360 (34%), Gaps = 22/360 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M       + ++ W+++     +      + + F +  + A II F      +    +  
Sbjct: 1   MPMLTNLQRTLLTWLLLVAAGWAALQVLEYFREFISVFVIAGIIAFLLSYPVALLSKRL- 59

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
               F AV+   S   + +  L       + +            Q    +P  +      
Sbjct: 60  --PRFAAVLVVYSSAGVVVGTLAVALGPLVSQQTA---------QLIASLPDIIRSGSLQ 108

Query: 117 MWASELWTKHLSHPQSLKILSETF---LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
           + A   W ++L  P  +  L   F   L+          +  F +      L+ I +++ 
Sbjct: 109 LEAFLKWARNLGLPVDVDRLVGGFGLRLQEQLQVITSPQSVEFLLGTFTGVLNFILILVI 168

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
            F+   +G  + ++            + +  +     +R  F G  ++ +   L+L   Y
Sbjct: 169 AFYMLLEGEKLWREAIGFLPANIRLRFSESLQYN---LRGFFTGQLVLGLFMALLLTPTY 225

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
               VP  + L +    M +IP         + + + +  N++ A  +     +   I D
Sbjct: 226 LFLNVPFGLVLALFVGTMELIPFIGATLGIGLVVIICLTQNLWLALWVLAASVLIQQIKD 285

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             L P ++G    L  +  F  L+ G +  GLLG+ +   +  +I  +++   ++    +
Sbjct: 286 NVLAPRILGNFTGLSPVLIFGALLIGAKIAGLLGVLLAIPISGVIKSLYETLAVSDPPPR 345


>gi|319784360|ref|YP_004143836.1| hypothetical protein Mesci_4677 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170248|gb|ADV13786.1| protein of unknown function UPF0118 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 400

 Score = 79.9 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 43/314 (13%), Positives = 105/314 (33%), Gaps = 19/314 (6%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           Y       P ++ +++ +   P+      +   S     V+  ++ + + ++  + L   
Sbjct: 48  YVFSAILLPFVAGMVLAYFLDPVADRL-QRLGLSRFMATVVILITFLIVLVLAFVILIPV 106

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDI--PGGMWASELWTKHLSHPQSLKILSETFLK 142
              +M +   K+          P +L+ +      +  +   +      +        L 
Sbjct: 107 LATQMADFAGKL----------PEYLTRLQSLITSFDPKWLEQKFGVNANSLRDGLNSLL 156

Query: 143 TNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
           T+G  F+    +     GM  +      +   +  F+   D   +   +D          
Sbjct: 157 TSGFGFVTTVFTSLWSSGMALVSVVSLFVVTPVVAFYMLLDWDRMVAVIDGWVPRDNVQT 216

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            + I+R +         G   + +  G +  +   L G+   + +G+   +++ IP    
Sbjct: 217 VRAIARDINTATAGFVRGQGTLCLVLGAMYATGLTLTGLNFGILIGLFAGLISFIPYVGS 276

Query: 260 ISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           ++   +++ +       +      + +   I  FI    L+P LVG  + L  +   F L
Sbjct: 277 LTGLVLAVGVAFVQFWPDWTMIVAVAVVFFIGQFIEGNILQPRLVGKSVGLHPVWLMFSL 336

Query: 317 VGGVRTMGLLGLFI 330
                  G +GL I
Sbjct: 337 FAFGALFGFVGLLI 350


>gi|121535964|ref|ZP_01667758.1| protein of unknown function UPF0118 [Thermosinus carboxydivorans
           Nor1]
 gi|121305456|gb|EAX46404.1| protein of unknown function UPF0118 [Thermosinus carboxydivorans
           Nor1]
          Length = 341

 Score = 79.9 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 55/327 (16%), Positives = 118/327 (36%), Gaps = 13/327 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            L+ ++    P + A ++ +   P      +       +   +    +  + I+    L 
Sbjct: 23  FLWRVRSGLYPFILAFLLAYLLNPAVCYLENH-GLRRIWAIAVVYAVLFSIIILGGSRLV 81

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + E++            G   P  ++ +     A +   ++   P SL+   +  L 
Sbjct: 82  PLLIREIEAF----------GRDFPAIVARVEDLAQALQWQYQNSVLPYSLRQALDKTLL 131

Query: 143 TNGIDFIPRFASRFGMI--FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
               +     +   G I   L + + +    I  F+   D   I ++L  L    +    
Sbjct: 132 LLQGEVQAFVSGLVGGIITLLSHFIGLAITPILAFYMLHDWHEIKERLLFLLPPYWRHEA 191

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             I R V KV+     G   +AI  GL++    +L  V   + +G+I  ++ +IP     
Sbjct: 192 VMIFRDVDKVLAGVIRGQITVAIIVGLLVSLGLYLLNVRYALMIGIIAGLLDVIPYFGAF 251

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
              + ++ L +  + + A  + +   +   +    + P ++G  + L  L   F L  G 
Sbjct: 252 IGASPAVTLALLESPWLALKVGILFLVIHQLEGTVIGPKVLGENVGLHPLSVIFALFVGG 311

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIM 347
              GL G+ +G  + AL  V  +  + 
Sbjct: 312 ELAGLAGMLLGVPVAALAKVFGRHLVR 338


>gi|225571246|ref|ZP_03780244.1| hypothetical protein CLOHYLEM_07335 [Clostridium hylemonae DSM
           15053]
 gi|225160077|gb|EEG72696.1| hypothetical protein CLOHYLEM_07335 [Clostridium hylemonae DSM
           15053]
          Length = 386

 Score = 79.9 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 123/361 (34%), Gaps = 26/361 (7%)

Query: 12  MRWMIMF--IILVSLY----------FLKGFFAPVLSALIIGFTSWPIYSSFISKKEES- 58
           +R +I+F  I+++ L+          F+     P +    I F      +        S 
Sbjct: 11  IRGLIIFTAIVVLCLWEYNKVFDILAFVFHILFPFILGGAIAFVLNVPMNFVERHLFGSD 70

Query: 59  --------STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRW 109
                   S     ++ + V+ L    +  + +  + ++    + +  + Q  IP V   
Sbjct: 71  KVRKSKVLSKMARPVSMLIVLLLVFSVIGIVMFILIPQLGRTFANLGESIQAFIPRVQTR 130

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP----RFASRFGMIFLDYCL 165
            +D+         W   L    +  + +      +G   +       A         + +
Sbjct: 131 AADLFHNNKEVMKWVNDLEFDWNKVMDAGIEFFRSGAGSVLDSTITAAKSIVSGIATFFI 190

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           + +F    L    +      + L +           ++  +      S   G  + A+  
Sbjct: 191 AFVFACYVLLQKEKLNIQAKKVLFAFVRRGRAEAALEVFSLTYSTFSSFLTGQCVEAVIL 250

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           G +   +  L  +P  + +G++ A  A+IP        AV  +L+   +   A       
Sbjct: 251 GGMFVVSMALFRLPYALLVGIVIAFTALIPIFGAFIGCAVGAFLIFMVDPVKALVFVALF 310

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            +   I    + P +VG  + LP +     +  G   MG++G+ I   +++++  +++E 
Sbjct: 311 LVLQQIEGNLIYPHVVGNSVGLPSIWVLAAVSIGGSLMGIVGMLIFIPVVSVVYALFREI 370

Query: 346 I 346
           +
Sbjct: 371 V 371


>gi|148997048|ref|ZP_01824702.1| hypothetical protein CGSSp11BS70_09810 [Streptococcus pneumoniae
           SP11-BS70]
 gi|168575531|ref|ZP_02721467.1| membrane protein [Streptococcus pneumoniae MLV-016]
 gi|307067471|ref|YP_003876437.1| putative permease [Streptococcus pneumoniae AP200]
 gi|147756748|gb|EDK63788.1| hypothetical protein CGSSp11BS70_09810 [Streptococcus pneumoniae
           SP11-BS70]
 gi|183578514|gb|EDT99042.1| membrane protein [Streptococcus pneumoniae MLV-016]
 gi|306409008|gb|ADM84435.1| Predicted permease [Streptococcus pneumoniae AP200]
          Length = 369

 Score = 79.9 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 42/316 (13%), Positives = 109/316 (34%), Gaps = 6/316 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L     P L  + + + + PI +      + +     +I   +++   ++ +++L    
Sbjct: 37  VLNTIMIPFLLGVFLYYLTNPIVTFLNKVCKLNRLLGILITLCTLVWGMVIGVVYLLPIL 96

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  L   ++ +      V   + D+        L  +      +L  +    +  N 
Sbjct: 97  INQLSSL---IISSQTIYSRVQDLIIDLSNYPALQNLDVEATIQQLNLSYVD---ILQNI 150

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           ++ +           +   L +I   + L +F  DG      L+         +   + +
Sbjct: 151 LNSVSNSVGSVLSALISTVLILIMTPVFLVYFLLDGHKFLPMLERTILKRDRLHIAGLLK 210

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   I     G++I AI  G +    Y + G+   +   + + +  +IP   P      
Sbjct: 211 NLNATIARYISGVSIDAIIIGCLAYIGYSIIGLKYALVFAIFSGVANLIPYVGPSIGLIP 270

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            I   I  +        ++  +   +    L P +VG  +K+  +     L+      G+
Sbjct: 271 MIIANIFTDPHRLLIAVIYMLVVQQVDGNILYPRIVGSVMKVHPITILVLLLLSSNIYGV 330

Query: 326 LGLFIGPVLMALIAVI 341
           +G+ +     +++  I
Sbjct: 331 VGMIVAVPTYSILKEI 346


>gi|15894954|ref|NP_348303.1| permease [Clostridium acetobutylicum ATCC 824]
 gi|15024639|gb|AAK79643.1|AE007677_5 Predicted permease [Clostridium acetobutylicum ATCC 824]
 gi|325509091|gb|ADZ20727.1| permease [Clostridium acetobutylicum EA 2018]
          Length = 341

 Score = 79.9 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 56/319 (17%), Positives = 105/319 (32%), Gaps = 13/319 (4%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L      +L A +I +T  P +   + KK  S+   A     S+    I+ + FL    
Sbjct: 30  ILSEIIYIILVAFLIAYTVKPFHKCLV-KKGLSARKSAAFLLGSLTLFCILFMFFLVPSI 88

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             E   +         +   + + L     GM          S   +             
Sbjct: 89  FKETLNINMTKNEIQYYIDFLNKKLKPTLQGMAGETFIVTIYSKFNNELRE--------- 139

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              I      F M      + I  + I  ++F  DG +I  ++  +    +    KKI  
Sbjct: 140 ---IVSKLFNFVMSIGKNIVDIAIVPIISYYFLADGENIRNKILVIFPLSYRKLVKKIMC 196

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            V  V+    +   I+    GL+      +  V   + L ++  +  +IP   PI     
Sbjct: 197 DVDNVLSKYNVTQIILCTFVGLLTFIILIVFKVDYPIILSIVNGLFNIIPYFGPIFGAIP 256

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +I +    +        +   I   I    + P + G  I +  L     L+ G +  G 
Sbjct: 257 AIIIAFLHSTKVGIYTTVCLYIVQIIEGNLIAPKITGESIDMHPLIVIILLIAGEKIAGF 316

Query: 326 LGLFIGPVLMALIAVIWKE 344
            G+ +   +  +I VI+++
Sbjct: 317 WGMILAIPVGVIIKVIYED 335


>gi|92109323|ref|YP_571611.1| putative GAF sensor protein [Nitrobacter hamburgensis X14]
 gi|91802405|gb|ABE64779.1| putative GAF sensor protein [Nitrobacter hamburgensis X14]
          Length = 801

 Score = 79.9 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 52/331 (15%), Positives = 108/331 (32%), Gaps = 12/331 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           ++L  LY+ +    P+  A +I F   P  +   ++          +  V+V+C  +   
Sbjct: 40  VLLTGLYYGRQILIPLAIAFLITFALNPPVTWL-ARLGLPRLLATSLVMVTVVCALVGLG 98

Query: 79  LFLFY---YGMLEM----KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
             L        +E+      +++K+    Q+      +   +       +        P 
Sbjct: 99  TILGTQVRSIAVELPAYQSTILTKLADLRQNLKAPGLFDGVLKIFERVQKEVELKDDRPA 158

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
               L +              A  + +   +   +   ++I +F    D   +  +   L
Sbjct: 159 EGSPLPQRVEIVPEPQTPFEQAFAWLVRSAEPLATSGIILIFVFLALLDSADLRDRFLRL 218

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               F      I     ++ R   +   ++ +  G+ L +  W+ GVP  +  G + AIM
Sbjct: 219 LGGNFHRSTDAIQEAGARISRYLLMQ-LLVNVSYGVPLATGLWIIGVPGALLWGAVGAIM 277

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGGPIKLPF 309
             +P   P+      I L    +   +  L+    I +   I    + P L G    L  
Sbjct: 278 RFVPYIGPLIAAIFPIALAFAVDSGWSMLLWSVALIVMLELISSNIVEPLLYGSSTGLSA 337

Query: 310 LPTFFGLVGGVRTMGLLGLFIG-PVLMALIA 339
           +             G LGL +  P+ + L+ 
Sbjct: 338 ISLIAAATLWTVLWGPLGLILSTPLTVCLLV 368


>gi|52426013|ref|YP_089150.1| PerM protein [Mannheimia succiniciproducens MBEL55E]
 gi|52308065|gb|AAU38565.1| PerM protein [Mannheimia succiniciproducens MBEL55E]
          Length = 355

 Score = 79.9 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 55/350 (15%), Positives = 120/350 (34%), Gaps = 17/350 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           +PQ +    I+F   V++YF     AP+L AL++ +      S    K +       ++ 
Sbjct: 15  DPQAMGLAAILFFGFVAIYFFSDLIAPLLIALVLAYLLEMPISFLSDKLKLPRFLSILLI 74

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
               + + I+ +  L    + +   L S +           +W+  +P        +   
Sbjct: 75  LGGFIAVTILMIFGLIPTLINQTVNLFSDLPNMLNLS---HQWVMSLPESYPELVDYQMI 131

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            S   +++  +  F ++       +F+    M  +   +    + + +FF  +D   +  
Sbjct: 132 DSLFITIREKTLAFGESA-----VKFSLSSLMNLVTIGIYAFLVPLMVFFMVKDQDELIA 186

Query: 187 QLDSLGEH---LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                      L    W+++   +   IR     + I+A+    V    +   G+   + 
Sbjct: 187 GFSRFLPKNRTLASKVWQEMQLQIANYIRGKLFEILIVAV----VSYIIFLFFGLRYPLL 242

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLV 301
           L V   +  +IP  GA +    V++  + +          +   I   ++D   L P+L 
Sbjct: 243 LAVAVGLSVLIPYIGAVLVTIPVALVAIFQFGATPTFGYLMTAYIVSQLLDGNLLVPYLF 302

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
              + L  L     ++      G  G+F    L  L+  +         E
Sbjct: 303 SEAVNLHPLTIIIAVLIFGGLWGFWGVFFAIPLATLVKAVVNAWPSNEDE 352


>gi|257066949|ref|YP_003153205.1| hypothetical protein Apre_1463 [Anaerococcus prevotii DSM 20548]
 gi|256798829|gb|ACV29484.1| protein of unknown function UPF0118 [Anaerococcus prevotii DSM
           20548]
          Length = 407

 Score = 79.9 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 46/369 (12%), Positives = 124/369 (33%), Gaps = 25/369 (6%)

Query: 15  MIMFIILVSLYFL----------KGFFAPVLSALIIGFTSWPIYSSFISKKEES------ 58
            ++ +I    +++               P++  L+I F      + F  K          
Sbjct: 19  FLLILIFFGFWYIDSVKGLLLTTYSVLRPIVYGLVIAFIINLPMNFFQEKLFCRFIDKDK 78

Query: 59  -STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWL--SDIP 114
               ++V++ +    +F   +  +    + E+   ++ ++         +  +L    + 
Sbjct: 79  HRKLISVLSLLLAWIIFFAVVTLILTVLIPELANAITSLIDNIPVFFDRLIEYLNNQRLF 138

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
             + A      +  +  +L      FL      F+ +  S          ++I+   I  
Sbjct: 139 KEVSAEISAKINSLNVDNLTSELRKFLDGKNWGFVSK-TSSILNSVSQTIITIVMGFIFS 197

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL----GMTIIAIGEGLVLG 230
           F+   +  ++    + +    F     K    + K+  ++F        +  +  GL+  
Sbjct: 198 FYVSLNKKTLQTNTNKIILANFEEEKVKQINYIAKLSYNSFARFLETKLLSCLSLGLICF 257

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
               +  +P    + ++     +IP   PI  T V + L+   +   +    ++      
Sbjct: 258 IGMLILRLPMPAMISILVGAFDIIPYFGPIIATGVGMILIFIQSPAQSLVFLIFVLAIQQ 317

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           + +  + P ++G    LP +  F  +  G    G+ G+ +   +  +I  + ++S     
Sbjct: 318 VQESIIYPLVIGKHQGLPAIWIFLSVFVGGGLFGIFGMLVSMPIATVIYTLVEDSTKRKL 377

Query: 351 ENKEKISSN 359
           + KE    +
Sbjct: 378 KTKEISEED 386


>gi|71066178|ref|YP_264905.1| PerM family permease [Psychrobacter arcticus 273-4]
 gi|71039163|gb|AAZ19471.1| probable permease protein, PerM family [Psychrobacter arcticus
           273-4]
          Length = 367

 Score = 79.9 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 47/331 (14%), Positives = 115/331 (34%), Gaps = 9/331 (2%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           LY +     P + A ++ +   P+                ++   ++    ++ L +L  
Sbjct: 26  LYLMMPVIVPFVFAFVLAYLFNPLVKRLSKYI--KRWIAIIVVYSTITLSMVMLLWWLIP 83

Query: 84  YGMLEMKELVSKVVLANQ-HGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
               +++     +      +   V  W +             +     ++L    ++  K
Sbjct: 84  TLWHQLQAAWDYLPQLLTWYNEVVREWFAS---NSRIRLPELESKGFSETLVEYMQSNYK 140

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 +        M F++    I+ + I  F+F  +               +     +
Sbjct: 141 FEDASTMMSQILASSMNFINNAGLIVLVPILTFYFLFNWDQRLHTWKMAIPAPYCKKVIQ 200

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
           I++   + + +   G  ++ +  G +      L G+   + +G++  I + +P  G  I 
Sbjct: 201 IAQECDRALMAFIKGQLLVMVLLGAIYAVQLQLIGLELGLIIGMVAGIASFVPYLGFGIG 260

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIV--DKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           F A  I  L +  +       + GA  +        L+P L+G  I L  L   F ++ G
Sbjct: 261 FVAAIIACLFQFGLDWTYLSLIVGAFLIGQAAEGYILQPLLLGDKIGLSPLWVIFSVLAG 320

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
              +G +G+ I   + A++ V+++   +  +
Sbjct: 321 ASLLGFVGMLIALPVSAVLNVLFRHFYVHYQ 351


>gi|157828826|ref|YP_001495068.1| hypothetical protein A1G_05375 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|157801307|gb|ABV76560.1| hypothetical protein A1G_05375 [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 351

 Score = 79.9 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 54/350 (15%), Positives = 118/350 (33%), Gaps = 7/350 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N   I   + + + +     +     P   A II +   P      SK + S+ F + I
Sbjct: 1   MNRTVIFWLVFLGLFISGFMLISDAIKPFFIAFIISYLLQPAIGFIASKFKISNKFASSI 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + +F + L  L      ++   ++ +   N +          +P  M        
Sbjct: 61  IYLIFLSIFFLSLTILVPIIYGQIFTFINNIPKYNNYLQAEI-----LPPIMVKIYSIEP 115

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            ++      + +        +  I     R+ +I ++  +  + + I LF+F RD   I 
Sbjct: 116 DIADKIKNSLSNFINSIFTILGSIANNFWRYTIITINIFVLFLLIPIILFYFLRDWAKII 175

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             + SL           I   +  ++ +   G   I +        A+ + G+   + LG
Sbjct: 176 ANMKSLLPIKTRPKILAILSAINNLLSAYIRGQLNICLLLSTYYSIAFTVIGIDLALLLG 235

Query: 246 VITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           ++T  + +IP           + I  L  G       + +   +          P ++G 
Sbjct: 236 ILTGFLVIIPFLGTFISFLLTLIIGYLTFGVTTKLLYIMIIYLVGNICESYIFTPKIIGD 295

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            I L  L   F +       G++G+F    +  +  ++    I   K ++
Sbjct: 296 KIGLHPLWIIFSIFACGSLFGIIGIFFAIPIAGITKILLLNLIKFYKSSQ 345


>gi|310287916|ref|YP_003939174.1| hypothetical protein BBIF_1395 [Bifidobacterium bifidum S17]
 gi|309251852|gb|ADO53600.1| conserved hypothetical protein [Bifidobacterium bifidum S17]
          Length = 534

 Score = 79.9 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/338 (11%), Positives = 110/338 (32%), Gaps = 19/338 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGF----TSWPIYSSFISKKEESSTFLAVIATVS 69
            +I     + ++   G  + ++  ++I         P+  S +          + ++ + 
Sbjct: 35  TVIAVFAAIFVWTSWGKISTIVLDVVISIFIALAVEPLVVSMVRH-GWKRGLASAVSLIG 93

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +  + +  L       + ++  +V  +       +                +  +  +  
Sbjct: 94  LAVIVMALLTLFGNMFVQQLISMVKGLPSIYTEIVDA------------VKQYTSFDMPK 141

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            ++L +     ++T+ I      A    M    + L+++ +++  ++    G  + + L 
Sbjct: 142 IENLGMEIFKNVQTSWITDFAGQALTTTMGVFSFLLNLLTVLMVTYYISAAGPKMRRSLC 201

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                     +     +V + I       +I+A            +  VP  + L +   
Sbjct: 202 QWLGPNTQRRFLLGWTVVQEQISGFLFSRSILAAINATCTAVFLEIIHVPYWLPLALFCG 261

Query: 250 IMA-MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           I++  +P  G  I      ++      ++    + ++  +   I +  L P +    + L
Sbjct: 262 IVSQFVPTVGTYIGGALPVLFAWGSNGLWYGVGVLVFIIVYQQIENLILSPKVSQRTMDL 321

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
                F  ++      G LG F+   + A +  I+K  
Sbjct: 322 NPCVAFLAVLVMGALFGALGAFLALPVTASMQAIFKVY 359


>gi|270292857|ref|ZP_06199068.1| membrane protein [Streptococcus sp. M143]
 gi|270278836|gb|EFA24682.1| membrane protein [Streptococcus sp. M143]
          Length = 371

 Score = 79.9 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 41/312 (13%), Positives = 104/312 (33%), Gaps = 8/312 (2%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L      + + PI +    K + +     +I   +++   +V +++L    + ++ 
Sbjct: 42  MIPFLLGGFFYYLTNPIVTFLEKKCKVNRLIGVLITLCALIGTIVVGVVYLLPILINQLT 101

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF-LKTNGIDFI 149
            L+            +   L D+   +  + ++          ++      +  N ++ +
Sbjct: 102 SLI-------VSSQNIYSRLQDLIYDLSMNPIFQNIDIQKTIQQLNLSYVDILQNILNSV 154

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                          L +I   + L +F  DG      L+          +  + + +  
Sbjct: 155 SNSLGSVLSALFSTVLILIMTPVFLIYFLLDGHKFLPMLERTVLKHDKLNFSSLLKNLNA 214

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            I     G+ I A+  G +    Y   G+   +   + + +  +IP   P       I  
Sbjct: 215 TIARYISGIAIDAVIIGCLAYIGYSTIGLKYALVFAIFSGLANLIPYVGPSIGLIPMIIA 274

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            +  +        ++  I   +    L P +VGG +K+  +     L+      G++G+ 
Sbjct: 275 NVFTDPHRVLIAVIYMLIIQQVDGNILYPRIVGGVMKVHPITILVLLLLSSNIYGVIGMI 334

Query: 330 IGPVLMALIAVI 341
           +     +++  I
Sbjct: 335 VAVPTYSILKEI 346


>gi|15803016|ref|NP_289046.1| putative permease [Escherichia coli O157:H7 EDL933]
 gi|25307074|pir||G85892 probable permease perM [imported] - Escherichia coli (strain
           O157:H7, substrain EDL933)
 gi|12516881|gb|AAG57603.1|AE005479_1 putative permease [Escherichia coli O157:H7 str. EDL933]
          Length = 353

 Score = 79.9 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 55/347 (15%), Positives = 115/347 (33%), Gaps = 14/347 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +P+ I   +I+      ++F  G  AP+L A+++ +   WP      S       
Sbjct: 10  RRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWP-TVRLQSIGCSRRW 68

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             +++  V V  L ++  + L       +  +     + N+            P  M A 
Sbjct: 69  ATSIVLVVFVGILLLMAFVVLPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +     +    +  + ++ +K +    +           L   + ++ + + +FF  +D
Sbjct: 129 IIDAMAENMRSRMLTMGDSVVKISLASLV---------GLLTIAVYLVLVPLMVFFLLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +          ++ + + + I +   G  +  I  G+     + L G+  
Sbjct: 180 KEQMLNAVRRVLPRNRGL-AXQVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V+     +IP  GA +    V  + L   G        F    I   +    L P
Sbjct: 239 SLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L    + L  L     +V      G  G+F    L  LI  +    
Sbjct: 299 VLFSEAVNLHPLVIIXSVVIFGGLWGFWGVFFAIPLATLIKAVIHAW 345


>gi|315179430|gb|ADT86344.1| permease PerM [Vibrio furnissii NCTC 11218]
          Length = 357

 Score = 79.9 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 52/354 (14%), Positives = 120/354 (33%), Gaps = 14/354 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +    I+F   +++YF     AP+L A+++ +   WP+      K           
Sbjct: 15  DPHAVSLVAILFFGFITIYFFGHLIAPLLVAIVLAYLLEWPVVQLCRWKIPR-------- 66

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T +V+ + +  +  + +     +  +  ++V        +   L      +        
Sbjct: 67  -TFAVILVIVAFIGVMLFAVFGLVPTIWQQIVNLINDIPNMYTGLQKFIATLPDRYPELA 125

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L   + +   ++    + G   +    +    I     + +I + + +FF  +D   + 
Sbjct: 126 SLEIVEPIMNNAKNKALSMGESVVKGSLASLVSIAT-LAVYLILVPLLVFFLLKDKQEML 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + +  +          ++   + + I +   G  +  +  G V    + +  +   V L 
Sbjct: 185 RIVRGVLPR-NRKLATEVWHEMNQQISNYIRGKVLEILIVGGVSYVTFAVLELRYSVLLA 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V      +IP  GA +    V+I  L + G       L +   I   +    L P L   
Sbjct: 244 VAVGFSVLIPYIGAAVVTVPVAIVALFQWGVTPEFYYLLIAYGIIQALDGNVLVPVLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
            + L  +     ++      G  G+F    L  L+  +WK      +E  +  +
Sbjct: 304 AVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWKALPSIDEEPPQTSA 357


>gi|239944747|ref|ZP_04696684.1| hypothetical protein SrosN15_27395 [Streptomyces roseosporus NRRL
           15998]
 gi|239991212|ref|ZP_04711876.1| hypothetical protein SrosN1_28166 [Streptomyces roseosporus NRRL
           11379]
 gi|291448209|ref|ZP_06587599.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291351156|gb|EFE78060.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 388

 Score = 79.9 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 47/352 (13%), Positives = 111/352 (31%), Gaps = 22/352 (6%)

Query: 13  RWMIMFIILVSLYFLK--------GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           R M++ + L + + L         G    VL A  +     P      S+          
Sbjct: 7   RAMVLALALYACFQLSSWAFDQLIGLLTNVLIAFFLALAIEPAVGRMASR-GIRRGLATF 65

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  + +    +  ++ L      ++ ++V +        I    W++       +     
Sbjct: 66  LVFLGLTIFGVGFVVLLGSMLAGQIVDMVDEFPKYIDSVI---NWVNQTFHTELSRVEVQ 122

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L H   L    + +++ +    +    +  G +F    + +       F+F  DG  +
Sbjct: 123 DSLLHSDWL----QKYVQNSATGVLDVSTTVIGGLFRLLTIFLF-----SFYFAADGPRL 173

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + L S+          +   I             ++A+  G+       + GVP   AL
Sbjct: 174 RRALCSVLPPARQTEVLRAWEIAVDKTGGYIYSRGLMALISGVAHYILLVILGVPYAPAL 233

Query: 245 GVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            V   +++  IP        A+ + +    + + A  +  +  I     +  L+P L   
Sbjct: 234 AVWVGLVSQFIPTIGTYLAGALPMLIAFTVDPWYALWVLGFVVIYQQFENYVLQPKLTAK 293

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            + +     F  ++ G   +G +G  +    +A +       +       + 
Sbjct: 294 TVDIHPAVAFGSVIAGTALLGAVGALVAIPAIATLQAFLGAYVKRYDVTDDP 345


>gi|251782288|ref|YP_002996590.1| hypothetical protein SDEG_0877 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390917|dbj|BAH81376.1| hypothetical protein SDEG_0877 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323127187|gb|ADX24484.1| hypothetical protein SDE12394_04950 [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 375

 Score = 79.9 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 108/285 (37%), Gaps = 8/285 (2%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           I  +     F + + ++    +    +L++ +    +   P  + + +            
Sbjct: 80  ICMLLAYLTFFILITWIISIVI---PDLIASISTLTKFDTPSIKEVVNQLEHNKLLARVI 136

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL--DYCLSIIFMIIALFFFYRDGF 182
           K++     L     ++ +     FI    +    + +     +++    +   +   +  
Sbjct: 137 KYIGGDAKLTQTITSYSQQLLKQFIGVLTNILTSVTVIASAIINLFISFVFSLYVLANKE 196

Query: 183 SISQQLDSLGEHLFPAYWKKI---SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           S+ +Q ++L +     Y ++I     ++       F+  T+ A+  G +  +  +L  +P
Sbjct: 197 SLCRQGNTLVDTYTGKYAQRIHYLVDLLHHRFHGFFVSQTLEAMILGTLTTTGMFLLQLP 256

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               +GV+ A  A+IP        A+   L++  ++  A    ++  I   I    + P 
Sbjct: 257 FAGTIGVLVAFTALIPVVGASIGAAIGFVLIMTQSMSQAIVFIVFLIILQQIEGNFIYPR 316

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           +VGG I LP +     +  G    G++G+ I   L A +  + K+
Sbjct: 317 VVGGSIGLPAMWVLMAITIGASLRGIVGMIIAVPLAATLYQVIKD 361


>gi|210615412|ref|ZP_03290539.1| hypothetical protein CLONEX_02755 [Clostridium nexile DSM 1787]
 gi|210150261|gb|EEA81270.1| hypothetical protein CLONEX_02755 [Clostridium nexile DSM 1787]
          Length = 372

 Score = 79.9 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 49/330 (14%), Positives = 111/330 (33%), Gaps = 5/330 (1%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +  I++ +  L  FF P +    I F + P+      + +      + I  ++V+   + 
Sbjct: 22  ILFIVIGIKLLW-FFMPFVIGWFIAFIANPLVCWLEKRLKIVKKLGSAIIIIAVLAGVVS 80

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM--WASELWTKHLSHPQSLK 134
            L F       E+  L++             + + +   G+     E      +   +  
Sbjct: 81  ALYFGISKLADEVGSLITNFPQMYSELEKGMKDIGESFQGVFRLLPEGIQTGWNAVVANL 140

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
             +   L     +     A           +S I  I+A +FF  +   +      +   
Sbjct: 141 DNTMGNLIGKISEPTVEAAGNLAKSIPSILVSTIVTIVAAYFFIAERDEVIVWFKKITPK 200

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                   +   +   +   F     I I  G++L   + +  V     L ++ A +  +
Sbjct: 201 PIQQRMTLVIDNLKYAVGGYFKAQFKIMIVVGVILFIGFEIMQVNYSALLAILIAFLDFL 260

Query: 255 P-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P  G   +    ++Y ++ G+      L +   +   +V + ++P LVG  + +  L   
Sbjct: 261 PVFGTGTAIWPWAVYKVLSGDYKMTIMLLVLYGVTQ-LVRQLIQPKLVGDGLGMQPLVAL 319

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             L  G +   LLG+     +  +   ++K
Sbjct: 320 VLLFVGYKVGSLLGMIFAVPVGMIAINMYK 349


>gi|150009942|ref|YP_001304685.1| putative permease [Parabacteroides distasonis ATCC 8503]
 gi|255012811|ref|ZP_05284937.1| putative permease [Bacteroides sp. 2_1_7]
 gi|149938366|gb|ABR45063.1| putative permease [Parabacteroides distasonis ATCC 8503]
          Length = 415

 Score = 79.9 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 66/360 (18%), Positives = 132/360 (36%), Gaps = 23/360 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   +++  I+  +  L+    P L A ++ +   P    F  K    S  L+++A +
Sbjct: 46  RIVFGILVISGIIYLIALLRNALLPFLIAWLLAYMMQPFVKFFQYKLCFKSRILSIMAVL 105

Query: 69  SVMCLFIVPLLFLFY-YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             + L I  L+ +       E  + +  +   +     VP               W ++L
Sbjct: 106 VTLGLLITLLIVMVVPSIAAEADKTLELIRTHDPGEGHVP----------LIPHSWMEYL 155

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD-----YCLSIIFMIIALF-FFYRDG 181
               +   + E   K N +  + + A +   I  +     + ++I+F+I+  F F   D 
Sbjct: 156 ESNVNFAQIMELLSKENLLKAVKQIAPQLWSILSNTFSILFSITIVFVILLYFIFILLDY 215

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I+     L    +  + + ++  V   +   F G ++IA+  G++L   + +   P  
Sbjct: 216 EKIANGWIDLIPERYRPFLQGLAEDVEYSMNRYFRGQSLIALSVGILLAIGFKIINFPLA 275

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLI----KGNIFNATC--LFLWGAIELFIVDKT 295
           V LG+   ++ +IP    I    + +  L+     G  F        L   I   I D  
Sbjct: 276 VTLGLFIGVLNLIPYMQAIGIIPMILLSLLRSAETGENFWLIFGLAILVLGIVQCIQDLY 335

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L P ++G  + L        L      +G +GL I   L  L    +K  I+      + 
Sbjct: 336 LTPRIMGKAMGLNPAIILLSLSIWGTILGFIGLIIALPLTTLCLSYYKRFILHEYNELDS 395


>gi|309806960|ref|ZP_07700942.1| putative membrane protein [Lactobacillus iners LactinV 03V1-b]
 gi|308166580|gb|EFO68777.1| putative membrane protein [Lactobacillus iners LactinV 03V1-b]
          Length = 334

 Score = 79.9 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 58/329 (17%), Positives = 115/329 (34%), Gaps = 4/329 (1%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           L F+      V+ A +  +   PI      K         +   + V+ + I+ +  L  
Sbjct: 5   LTFVNAIMPAVILAGVQYYLMNPIVDCLEQKYRIPRIVTILALFMVVLIILILIVNTLLP 64

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
               + K L+         G    R L   P            +S+ QS+   +      
Sbjct: 65  VIEAQTKSLIDHWPSYWDSGQEALRHLLHDPRLDGIRSDLNDAVSNAQSILFNT----GK 120

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
              +           +     ++++     LFF  +D   I+  L S         + K+
Sbjct: 121 ASFNLFLENLFGAVNVISMLIVTLLTAPFILFFMLKDSKKINPYLTSFMPPRLQNVFSKL 180

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
              +   + S   G  I+A   G++    Y   G+   + L ++ A + +IP    +   
Sbjct: 181 LHDINIAVSSYVRGQLIVAFWVGVMFAVGYTTIGLKYGLTLAILAACLNLIPYFGTLISL 240

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             +I + I  +      +F+   IE  I  + + P ++G  +K+  + T   L+G     
Sbjct: 241 IPAIIIGILDSPVMLLKIFVVFFIEQLIEGRFISPLVMGSKMKMNPVTTILLLIGANSVA 300

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           GLLG+     + A I +I  +     ++N
Sbjct: 301 GLLGVIFAIPIYAGIKIIVVQVFDYYRKN 329


>gi|284053786|ref|ZP_06383996.1| hypothetical protein AplaP_20212 [Arthrospira platensis str.
           Paraca]
          Length = 351

 Score = 79.9 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 60/353 (16%), Positives = 118/353 (33%), Gaps = 22/353 (6%)

Query: 3   ETMLNPQGIMRWMIMFII-LVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEES 58
           E   +   ++R++++F      + F+  F       + A I  F                
Sbjct: 10  ENFFSNSRLVRYLLLFAFGWAFIQFIAYFETIIIVFVFAAIFAFLLNYPVQWLQKY---- 65

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                   T   + + +V    L     L     ++ V    Q     P  L      + 
Sbjct: 66  --------TSHTVAVVVVFSTSLLLLIGLLATLGLAIVSELQQFVSQAPDLLDSFVNLVD 117

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             E   K+ +    L  L E   +     F   F +      L   +  I +++  FF  
Sbjct: 118 QIETLLKNANIQVDLDFLQEDLKQEVSNLF--GFGTAAVGKILSGLVEFIIILVVTFFML 175

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            +G  +     S     FP+  +  +  +       F G  I+++  G      Y +   
Sbjct: 176 LNGEELWASFQSF----FPSNIEDFTLSLRNNFLGFFRGRLILSVFFGFSAFFVYLILQA 231

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + L  +  +  +IPG        +S  +++   I  +  + ++  +   I +  L P
Sbjct: 232 PYPLFLATLVGVFDLIPGVGATIGIILSAIIVLPKGILISLQVIVYCVLLQQIEENILMP 291

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            ++   + L  +  FF L+ G R  G LGLF+   + A+I          +K+
Sbjct: 292 RIMQNSVNLNPVVIFFALLLGARIAGFLGLFLSIPIAAVIVGFVNIKNAEVKQ 344


>gi|297617177|ref|YP_003702336.1| sporulation integral membrane protein YtvI [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297145014|gb|ADI01771.1| sporulation integral membrane protein YtvI [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 373

 Score = 79.5 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 127/358 (35%), Gaps = 23/358 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIY-------------- 48
           +   + + +++  ++F+ L+S+Y L  +  P++ A+++    + +               
Sbjct: 4   QLARSVRTLVKTAVVFLALLSVYLLFRYVLPLVGAILVAIPGYVLPFLVALLLALLIEPL 63

Query: 49  -SSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
                 +      +   ++ + V       L +     + E+  L   +    +H + + 
Sbjct: 64  ARFLNYRLRLRRGWAVFLSLLLVWGTAGFLLTYFVSRLIGELIGLYKVI---TEHSVSIT 120

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFAS---RFGMIFLDYC 164
             ++   G      L      + Q     S     +     +         F +      
Sbjct: 121 NTIARALGQAELFYLRLNLPDNVQESIRNSLLQYLSGLEKILSGSVDVLIDFLVGLPGLF 180

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
           +  +   +A FF  RD   +      L    +    + + + +           +++   
Sbjct: 181 VFFLISTVATFFILRDWNKLRSGFFELLPDSWKITVRTVIKDLFNAFTGFLKAYSLLVTV 240

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFL 283
            G+       L GV   + LG++T ++ ++P  G  + F    I+  I G    AT L +
Sbjct: 241 TGIETIVGLKLLGVEYALTLGLVTGLLDILPVLGPGVLFVPWIIFSYITGASGFATGLLI 300

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
              I +  V + L P LVG  I L  L T   L  G++ +G  GL +GPV++ L    
Sbjct: 301 LYGILVA-VRQVLEPKLVGDSIGLHPLATLVSLYIGLKLLGPAGLVLGPVMVILYLAC 357


>gi|328957089|ref|YP_004374475.1| putative integral inner membrane protein [Carnobacterium sp. 17-4]
 gi|328673413|gb|AEB29459.1| putative integral inner membrane protein [Carnobacterium sp. 17-4]
          Length = 364

 Score = 79.5 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 48/317 (15%), Positives = 112/317 (35%), Gaps = 9/317 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P++ A  + +   P+       K +            ++ +F++ L F+ +  
Sbjct: 39  FVSTLFTPLIVAGFLYYLLNPVIGQLEKIKIKRKY--------GIIIVFLLFLGFVAFLA 90

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH-LSHPQSLKILSETFLKTN 144
           +  +  L+ +V           + L D    +    +     L        LS   +   
Sbjct: 91  VSVIPNLIEQVGQLITSIPSFLKTLEDFSNELLQGPMLENFDLEKSLGTMDLSIENIANT 150

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               +            +  + I  + I LF+ ++DG      +       +     ++ 
Sbjct: 151 IFTTLTASVGTLVGALANTTIVIFTVPIILFYMFKDGKHFRPAVAKFFPKEYRGQMIELL 210

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
             + + I S   G  ++ +   +     Y + G+P  + LG+I  +  +IP   P    A
Sbjct: 211 GQMNETIASYISGQALVCLFVAIFTYLGYLITGMPYGLLLGIIAGVTNIIPYIGPYIGAA 270

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            ++++ +  +   A  + L   +   I    + P ++G  + +  L     L+      G
Sbjct: 271 PAVFIALTISPTQALLVALVVLVVQQIDSAFISPNVIGKTLSIHPLTIIVLLLVAGNIAG 330

Query: 325 LLGLFIGPVLMALIAVI 341
           +LG+ +G    A++  I
Sbjct: 331 ILGMILGVPTYAVVKTI 347


>gi|251793815|ref|YP_003008547.1| PerM [Aggregatibacter aphrophilus NJ8700]
 gi|247535214|gb|ACS98460.1| PerM [Aggregatibacter aphrophilus NJ8700]
          Length = 352

 Score = 79.5 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 51/342 (14%), Positives = 112/342 (32%), Gaps = 13/342 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +PQ +    I+    +++YF     AP+L A+++ +   WP+    +++K +    LA  
Sbjct: 15  DPQAMGLAAILLFGFIAIYFFSDLIAPLLVAIVLAYLLEWPV--RLLNEKLKCPRLLA-- 70

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T+ +     +  L +         ++V+ +            WL  +P           
Sbjct: 71  TTLVIGTFTGLVFLVVLVLLPNLWTQMVNLLSDLPHMFNKFNEWLLSLPE---RYPDLID 127

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +       + E  L           AS   M  +   +    + + +FF  +D   + 
Sbjct: 128 TKTVESIFGSVKEKILGLGESALKLSLASL--MNLVTLGIYAFLVPLMVFFLLKDKRQLM 185

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +              +   + + I +   G  +       V    + + G+   + L 
Sbjct: 186 DGVSRFLPR-NRTLASAVWVEMQQQISNYIQGKLVEIFVVAAVTYMIFLIFGLNYPLLLA 244

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V   I  ++P  GA +    V +  + + G+      + +   +   +    L PFL   
Sbjct: 245 VAVGISVLVPYIGAVLVAIPVVLVAIFQFGDTHTFWYIVIAFVVSQLLDGNLLVPFLFSE 304

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            + L  L     ++      G  G+F    L  L+  +    
Sbjct: 305 AVNLHPLVIIIAVLIFGGLWGFWGVFFAIPLATLVKAVVNAW 346


>gi|169335805|ref|ZP_02862998.1| hypothetical protein ANASTE_02231 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258543|gb|EDS72509.1| hypothetical protein ANASTE_02231 [Anaerofustis stercorihominis DSM
           17244]
          Length = 406

 Score = 79.5 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 124/343 (36%), Gaps = 19/343 (5%)

Query: 31  FAPVLSALIIGFTSW----PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
             PVL   II F  +     +Y+      +       V+++V+VM + I+ +  + Y  +
Sbjct: 60  LKPVLIGFIIAFFLYQPVDNLYNRINKHSKFKDGTNRVLSSVAVMIIAILIITLIVYIVL 119

Query: 87  LE-MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
              +  + S +     +   +  +++D+        +         +   ++ T +  N 
Sbjct: 120 PSTITSITSLITSIQDNMGSIESFVTDLTKHPMVVNILNFFNIDITTSSGVNATLV--NM 177

Query: 146 IDFIPRFASRFGMIFLDYCLSI-------IFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
           + F   +    G   ++  +S+          I    +   D  ++ +Q+  + E +F  
Sbjct: 178 LSFAKTWVEGIGTNLVNATMSVGKTVYNVFIAIFLALYMLIDKDTLLRQVSRVSEAVFSE 237

Query: 199 YW----KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                   +  ++  +      G  I ++  G +  +  ++  +     +  I  I  MI
Sbjct: 238 RIYGRVSYVLDLMNYMFFKFLSGKAICSLIVGAMGMALAYIFKIKYASLIAFIITITNMI 297

Query: 255 P-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P  G   S    SI+ +I G       + L       I    L P ++G  + L      
Sbjct: 298 PLFGPIFSVIPCSIFAMISGGPIQGIIMVLIIIFIQQIDQNVLAPKILGDVVGLNGFWVI 357

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
             ++      G++G+ IG  + A++ ++  + +M  K+  +  
Sbjct: 358 VSIIFCGSLFGVVGMVIGIPIFAVLKILMGQWLMDRKDENKPP 400


>gi|114562932|ref|YP_750445.1| hypothetical protein Sfri_1757 [Shewanella frigidimarina NCIMB 400]
 gi|114334225|gb|ABI71607.1| protein of unknown function UPF0118 [Shewanella frigidimarina NCIMB
           400]
          Length = 360

 Score = 79.5 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 54/317 (17%), Positives = 108/317 (34%), Gaps = 12/317 (3%)

Query: 45  WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
           WP+    +S+   S T  A I  V  + L I+    L      +   LV+ +      G+
Sbjct: 54  WPVAQ--MSRLGISRTAAATIVLVVFLGLMIILTFGLVPSIWRQGVSLVTDLPSMIDKGM 111

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
            + R  S       A        S   S+       L T  +  + +    +    L   
Sbjct: 112 IIVREFS-------ADYPQFVSASQLDSMMEEINKMLDTQHLIDLGKQILGYSASLLVLM 164

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
           +  I + + +FFF +D   +                +K+   + + I +   G  I  + 
Sbjct: 165 VYAILVPLLVFFFLKDKEFLLNGSKRFFPSNRGL-ARKVWFEMDQQIFNYIRGKVIEIVI 223

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFL 283
            G+     + + G+     LGV+T +  +IP  GA +    +++    +          +
Sbjct: 224 IGVASYIFFAIMGLRYSALLGVLTGLSVLIPYVGATLVTLPIALVAFFQWGFSAEFGYLM 283

Query: 284 WGAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            G   +  +D   L P L    + L  +     ++      G+ G+F    L +L+  + 
Sbjct: 284 LGYGIIQALDGNVLVPLLFSDAVDLHPVVIIAAVLVFGGLWGVWGVFFAIPLASLVKAVI 343

Query: 343 KESIMAIKENKEKISSN 359
                  ++ + K  S 
Sbjct: 344 NAWPNNQEQQRVKFDSE 360


>gi|262377526|ref|ZP_06070748.1| phytochrome sensor protein [Acinetobacter lwoffii SH145]
 gi|262307582|gb|EEY88723.1| phytochrome sensor protein [Acinetobacter lwoffii SH145]
          Length = 509

 Score = 79.5 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 55/349 (15%), Positives = 124/349 (35%), Gaps = 31/349 (8%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +  ++I  +++ +LYF +  F P+  A+++ F   P+ S    K+     + A+   + +
Sbjct: 18  MAGFVIAAVVMTALYFGRDIFIPLALAILLAFLLSPLVSRL--KRWGCPQWAAIGLVMCL 75

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
              F   L     Y  +++ +L  ++    Q+   + + L  +        +W   +   
Sbjct: 76  TLSF---LGGTATYLGVQLGKLSQELP---QYQDTIQQKLKMLENYRQGPSMWDGAIQTF 129

Query: 131 QSLKILSETF----------------LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
            +++   +T                 L+    +    + ++         +  +FM++ L
Sbjct: 130 DTVEDSIDTPEQETEDPNVQNVKVVGLEPTSEEAALDWLNKILNPLAIIGIVFLFMVLIL 189

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           F    +G  +  +   L           +     K I +      ++ +  G+ +     
Sbjct: 190 F----NGKDLHDRFLKLLGGNLNIGTDALDD-AGKSIGTYLRMQLLVNVTYGIPMAIGLL 244

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIV 292
           L GVP+ +  G++  +M  +P   PI      I L    +      L+    I +   I 
Sbjct: 245 LIGVPAAIMWGLVAVVMRFVPYVGPIVSAIFPITLAFAVDPGWDMVLWTVALILVLELIS 304

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +  + P+L G    L  L             G +GL +   L A + V+
Sbjct: 305 NNVIEPWLYGESTGLSTLAIILAATFWTTLWGPVGLILSTPLTACLLVL 353


>gi|94967597|ref|YP_589645.1| hypothetical protein Acid345_0566 [Candidatus Koribacter versatilis
           Ellin345]
 gi|94549647|gb|ABF39571.1| protein of unknown function UPF0118 [Candidatus Koribacter
           versatilis Ellin345]
          Length = 394

 Score = 79.5 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 57/304 (18%), Positives = 114/304 (37%), Gaps = 15/304 (4%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           P+ S        S     +I  V +     +    +      E ++L          G  
Sbjct: 82  PVVSRLAGWMRNSRGLAILIVYVLLFVAVTIAGALIGPRIFSEGQKL----------GQQ 131

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF--ASRFGMIFLDY 163
           +P     +  G  A  L ++H           +T L ++  + +     A       L  
Sbjct: 132 LPDLYDKVASGNIAFTLGSRH-GWSAETSQRLKTLLVSHQDEIVSAISSAGTRTAAMLTN 190

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSL-GEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
              II + I   F  +D   +   L ++ GE     ++ ++   V  ++        ++A
Sbjct: 191 IGWIIIIPILGAFLLKDKRDLRLSLQNIVGEPRKREFFGQLITDVDAMLSQFVRAQLLLA 250

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCL 281
           I  GLV  +A  +  VP    LG +  ++  +P  G  I+   +        N  +   +
Sbjct: 251 IISGLVYTAALSVLQVPYAYILGAVGGLLEFVPLVGPAIAAVGIVGVCFGTPNFHHTLWV 310

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            ++  +   + D  + P L+GG ++L  L T FG++ G    G+LG+++   +MA I ++
Sbjct: 311 VVFLGVWRLLQDYVISPRLLGGKVELHPLLTIFGVLAGGEVAGVLGIYLSVPVMATIRIL 370

Query: 342 WKES 345
           +   
Sbjct: 371 FIHW 374


>gi|148655693|ref|YP_001275898.1| hypothetical protein RoseRS_1556 [Roseiflexus sp. RS-1]
 gi|148567803|gb|ABQ89948.1| protein of unknown function UPF0118 [Roseiflexus sp. RS-1]
          Length = 407

 Score = 79.5 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 47/357 (13%), Positives = 115/357 (32%), Gaps = 20/357 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
            I    +  +  +  + ++G      P ++A I  +   P+ +    +          + 
Sbjct: 13  TIKLITVALLGALFFWLIRGLGNVLVPFVAAAITAYLFNPLITWLNRRTRIGRAIWIGVL 72

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + +  +       L      E   L +++             L  +       E+   +
Sbjct: 73  YIVIGIIIYGLWRTLGPAIEREYSGLQAQIPHTLNLVQQELLLLKHVSIAGIDIEVAPVN 132

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            +  ++L               +P        I  +  L  +  +I  F+   +   I +
Sbjct: 133 EALREALADFGRR---------LPEHVPHLVAIAFETLLLFVTYLIVTFYLLLEAPRIVE 183

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
               L    + A  + +   + +++     G  ++      +   A  + GV   + LG+
Sbjct: 184 WTYGLVPAPYRAEIRALGSQIDRILAGYVRGTLMLIPIMATLTTIALMILGVRYALVLGI 243

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKG--------NIFNATCLFLWGAIELFIVDKTLRP 298
           +T I+  IP   P S   ++I + +              A  + L   +     D  + P
Sbjct: 244 VTGILETIPLIGPWSAAGIAIIVALFQAPAPWGWPAWLIAGAIGLTYFVLRMFEDNFIIP 303

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            +VG  + L  +   F ++ G    G  GLF+   + A+  ++ +     + +  + 
Sbjct: 304 HVVGPAVHLHPMLVIFAILAGGALGGPFGLFVSIPVAAIARLLLRYLYYKLIDAPDP 360


>gi|92119311|ref|YP_579040.1| putative GAF sensor protein [Nitrobacter hamburgensis X14]
 gi|91802205|gb|ABE64580.1| putative GAF sensor protein [Nitrobacter hamburgensis X14]
          Length = 782

 Score = 79.5 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 58/337 (17%), Positives = 116/337 (34%), Gaps = 25/337 (7%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           ++L  LY+ +    P+  A +I F   P  +              ++AT  VM   +  L
Sbjct: 40  VLLGGLYYGRQILIPLAIAFLITFALNPPVTWLARLGLPR-----LLATSLVMVTVVCTL 94

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + L      +++ +  ++         V   L+D+   + A  L+ + L   + ++   E
Sbjct: 95  VGLGTILGTQVRSIAVELPAYQST---VLTKLADLRQNLKAPGLFDRVLKIFERVQKEVE 151

Query: 139 TFLKTNGIDFIPR-------------FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                     +P+              A  + M   +   +   ++I +F    D   + 
Sbjct: 152 LKDNRPAEGSLPQRVEIVPEPQTPFEQAFAWLMRSAEPLATSGIILIFVFLALLDFADLR 211

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            +   L    F      I     ++ R   +   ++ I  G++L +  W+  VP  +  G
Sbjct: 212 DRFLRLLGGNFHRSTDAIQEAGARISRYLLMQ-LLVNISYGVLLATGLWIIAVPGALLWG 270

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGG 303
            + AIM  +P   P+      I L    +   +  L+    I +   I    + P L G 
Sbjct: 271 AVGAIMRFVPYIGPLIAAIFPITLAFAVDSGWSMLLWSVALIVMLELISSNIVEPLLYGS 330

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIA 339
              L  +             G LGL +  P+ + L+ 
Sbjct: 331 STGLSAISLIAAATLWTVLWGPLGLILSTPLTVCLLV 367


>gi|15902821|ref|NP_358371.1| hypothetical protein spr0777 [Streptococcus pneumoniae R6]
 gi|116516125|ref|YP_816255.1| hypothetical protein SPD_0768 [Streptococcus pneumoniae D39]
 gi|148988292|ref|ZP_01819739.1| hypothetical protein CGSSp6BS73_05680 [Streptococcus pneumoniae
           SP6-BS73]
 gi|148993687|ref|ZP_01823134.1| hypothetical protein CGSSp9BS68_05315 [Streptococcus pneumoniae
           SP9-BS68]
 gi|149007182|ref|ZP_01830846.1| hypothetical protein CGSSp18BS74_05016 [Streptococcus pneumoniae
           SP18-BS74]
 gi|149010494|ref|ZP_01831865.1| hypothetical protein CGSSp19BS75_04047 [Streptococcus pneumoniae
           SP19-BS75]
 gi|182683788|ref|YP_001835535.1| membrane protein [Streptococcus pneumoniae CGSP14]
 gi|194398662|ref|YP_002037509.1| hypothetical protein SPG_0796 [Streptococcus pneumoniae G54]
 gi|237650528|ref|ZP_04524780.1| hypothetical protein SpneC1_07370 [Streptococcus pneumoniae CCRI
           1974]
 gi|237822667|ref|ZP_04598512.1| hypothetical protein SpneC19_10283 [Streptococcus pneumoniae CCRI
           1974M2]
 gi|298231088|ref|ZP_06964769.1| hypothetical protein SpneCMD_10508 [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255725|ref|ZP_06979311.1| hypothetical protein SpneCM_09065 [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298503121|ref|YP_003725061.1| permease [Streptococcus pneumoniae TCH8431/19A]
 gi|303255290|ref|ZP_07341361.1| hypothetical protein CGSSpBS455_07411 [Streptococcus pneumoniae
           BS455]
 gi|303260393|ref|ZP_07346362.1| membrane protein [Streptococcus pneumoniae SP-BS293]
 gi|303262750|ref|ZP_07348688.1| membrane protein [Streptococcus pneumoniae SP14-BS292]
 gi|303265039|ref|ZP_07350953.1| membrane protein [Streptococcus pneumoniae BS397]
 gi|303267131|ref|ZP_07353000.1| membrane protein [Streptococcus pneumoniae BS457]
 gi|303269373|ref|ZP_07355144.1| membrane protein [Streptococcus pneumoniae BS458]
 gi|15458373|gb|AAK99581.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116076701|gb|ABJ54421.1| membrane protein, putative [Streptococcus pneumoniae D39]
 gi|147761220|gb|EDK68187.1| hypothetical protein CGSSp18BS74_05016 [Streptococcus pneumoniae
           SP18-BS74]
 gi|147764975|gb|EDK71904.1| hypothetical protein CGSSp19BS75_04047 [Streptococcus pneumoniae
           SP19-BS75]
 gi|147925973|gb|EDK77047.1| hypothetical protein CGSSp6BS73_05680 [Streptococcus pneumoniae
           SP6-BS73]
 gi|147927767|gb|EDK78790.1| hypothetical protein CGSSp9BS68_05315 [Streptococcus pneumoniae
           SP9-BS68]
 gi|182629122|gb|ACB90070.1| membrane protein [Streptococcus pneumoniae CGSP14]
 gi|194358329|gb|ACF56777.1| conserved hypothetical protein [Streptococcus pneumoniae G54]
 gi|298238716|gb|ADI69847.1| possible permease [Streptococcus pneumoniae TCH8431/19A]
 gi|302597759|gb|EFL64834.1| hypothetical protein CGSSpBS455_07411 [Streptococcus pneumoniae
           BS455]
 gi|302636072|gb|EFL66569.1| membrane protein [Streptococcus pneumoniae SP14-BS292]
 gi|302638428|gb|EFL68894.1| membrane protein [Streptococcus pneumoniae SP-BS293]
 gi|302641091|gb|EFL71467.1| membrane protein [Streptococcus pneumoniae BS458]
 gi|302643339|gb|EFL73617.1| membrane protein [Streptococcus pneumoniae BS457]
 gi|302645399|gb|EFL75632.1| membrane protein [Streptococcus pneumoniae BS397]
          Length = 369

 Score = 79.5 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 42/316 (13%), Positives = 108/316 (34%), Gaps = 6/316 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L     P L    + + + PI +      + +     +I   +++   ++ +++L    
Sbjct: 37  VLNTIMIPFLLGGFLYYLTNPIVTFLNKVCKLNRLLGILITLCTLVWGMVIGVVYLLPIL 96

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  L   ++ +      V   + D+        L  +      +L  +    +  N 
Sbjct: 97  INQLSSL---IISSQTIYSRVQDLIIDLSNYPALQNLDVEATIQQLNLSYVD---ILQNI 150

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           ++ +           +   L +I   + L +F  DG      L+         +   + +
Sbjct: 151 LNSVSNSVGSVLSALISTVLILIMTPVFLVYFLLDGHKFLPMLERTILKRDRLHIAGLLK 210

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   I     G++I AI  G +    Y + G+   +   + + +  +IP   P      
Sbjct: 211 NLNATIARYISGVSIDAIIIGCLAYIGYSIIGLKYALVFAIFSGVANLIPYVGPSIGLIP 270

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            I   I  +        ++  +   +    L P +VG  +K+  +     L+      G+
Sbjct: 271 MIIANIFTDPHRLLIAVIYMLVVQQVDGNILYPRIVGSVMKVHPITILVLLLLSSNIYGV 330

Query: 326 LGLFIGPVLMALIAVI 341
           +G+ +     +++  I
Sbjct: 331 VGMIVAVPTYSILKEI 346


>gi|148262888|ref|YP_001229594.1| hypothetical protein Gura_0813 [Geobacter uraniireducens Rf4]
 gi|146396388|gb|ABQ25021.1| hypothetical protein Gura_0813 [Geobacter uraniireducens Rf4]
          Length = 173

 Score = 79.5 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 1/103 (0%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             I  +   S + L  F   ++ A +I  T+WP+      +            TV ++ +
Sbjct: 18  LFIGILTAASFWILHPFLTALVWATMIVVTTWPVMLRIQKRLRGKRALAVTAMTVGLLLV 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGI-PVPRWLSDIPG 115
           F +P        +    E+V+         + P P W+  +P 
Sbjct: 78  FSIPFTLAVINIIDWSDEIVTWSKSLATFTVSPPPAWVEQLPV 120


>gi|27365255|ref|NP_760783.1| putative permease PerM [Vibrio vulnificus CMCP6]
 gi|27361402|gb|AAO10310.1| Putative permease PerM (= YfgO) [Vibrio vulnificus CMCP6]
          Length = 356

 Score = 79.5 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 53/352 (15%), Positives = 123/352 (34%), Gaps = 14/352 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +    I+    V++YF     AP+L A+++ +   WP+    + +     T   + 
Sbjct: 15  DPHAVSLVAILLFGFVTIYFFGHLLAPLLVAIVLAYLLEWPVAQ--LRRFGVPRTVGVIA 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + L ++ L  L      ++  L++ V         + ++++ +P           
Sbjct: 73  VILLFIGLMLIALFGLIPTIWTQVGNLINDVPNMYNG---LQQFIASLPE----RYPELA 125

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +L   +++   ++  +   G   +    +   +      + +I + + +FF  +D   + 
Sbjct: 126 NLQIVEAIVTNAKNKVLGMGESVVKGSLASL-ISIATLAVYLILVPLLVFFLLKDKEEMM 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    L          K+   + + I +   G  +  +  G V    + +  +     L 
Sbjct: 185 RMASGLLPK-NRNLANKVWHEMNEQISNYIRGKVLEILIVGGVSYVTFAILDLRYSALLA 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V   +  +IP  GA      V+I  L + G       L +   I   +    L P L   
Sbjct: 244 VAVGLSVLIPYIGAAAVTVPVAIVALFQWGISTEFYTLLIAYGIIQALDGNVLVPVLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            + L  +     ++      G  G+F    L  L+  +WK      +   + 
Sbjct: 304 AVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWKALPSQDEHEAQP 355


>gi|108802917|ref|YP_642854.1| hypothetical protein Rxyl_0061 [Rubrobacter xylanophilus DSM 9941]
 gi|108764160|gb|ABG03042.1| protein of unknown function UPF0118 [Rubrobacter xylanophilus DSM
           9941]
          Length = 383

 Score = 79.5 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 101/281 (35%), Gaps = 1/281 (0%)

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           +   V+V+ LF +  L L +   L +++L + V +          +   +   +   +L 
Sbjct: 87  LAILVTVLGLFGLVALALLFLIPLLIEQLTNFVRITPAIAASATEFFGSLDDLLNRRDLP 146

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +      S  +          ++ + R    F      + + ++ ++    +   D   
Sbjct: 147 LQLPESFVSDLVRDLFDRAQQILEGMIRNLIGFISGAFSFAVGVLGVLFVAIYLLIDVRK 206

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +      +  H +    +++       +     G+  +   +G +  +A W+ GVP  + 
Sbjct: 207 VKAAYLRMVPHRYRWDARELWDAFGVSLSRYLGGLLFVVAVQGALSAAALWVLGVPYPIL 266

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           LG   ++ A++P  G  +      I  LI      A    +            L P + G
Sbjct: 267 LGAWVSVTAIVPYLGPFLGAIPAIIVALIFTTPTTAVLTVIAYIAIQQFEGNFLTPRIQG 326

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             +++  +     ++GG +  G++G+     ++A++ V   
Sbjct: 327 RALQVHPIIVLLAVIGGGQIAGIVGILFAVPVLAILRVFVD 367


>gi|283832132|ref|ZP_06351873.1| permease, PerM family [Citrobacter youngae ATCC 29220]
 gi|291071762|gb|EFE09871.1| permease, PerM family [Citrobacter youngae ATCC 29220]
          Length = 354

 Score = 79.5 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 53/351 (15%), Positives = 121/351 (34%), Gaps = 22/351 (6%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPI----YSSFISKKE 56
           R    +P+ I   +I+      L+F  G  AP+L A+++ +   WP     +     +  
Sbjct: 10  RRRFSDPEAIALLIILVAGFGILFFFSGLLAPLLVAIVLAYLLEWPTVRLEHIGCSRRWA 69

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
            S   +  +  + +M   ++P+ +    G+  ++++   +   +     +PR    +   
Sbjct: 70  TSIVLVVFVGILLLMAFVVMPVAW--QQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDA 127

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
                +     S   ++             D + +++    +  L   + ++ + + +FF
Sbjct: 128 GIIDAMAENMRSRMLTM------------GDSVVKYSLASLVGLLTLAVYLVLVPLMVFF 175

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
             +D   +   +  +          ++ + + + I +   G  +  +  G+     + L 
Sbjct: 176 LIKDKGQMLNAVRRVLPRNRGLAG-QVWKEMNQQITNYIRGKVLEMVVVGVATWLGFLLF 234

Query: 237 GVPSHVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           G+   + L V+     +IP  GA +    V  + L   G        F    I   +   
Sbjct: 235 GLNYSLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGLGTEFWSCFAVYLIIQALDGN 294

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L P L    + L  L     +V      G  G+F    L  LI  +    
Sbjct: 295 LLVPVLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVMHAW 345


>gi|302522271|ref|ZP_07274613.1| conserved hypothetical protein [Streptomyces sp. SPB78]
 gi|302431166|gb|EFL02982.1| conserved hypothetical protein [Streptomyces sp. SPB78]
          Length = 444

 Score = 79.5 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 48/347 (13%), Positives = 113/347 (32%), Gaps = 21/347 (6%)

Query: 17  MFIILVSLYF-------LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +++            L G    VL A  +     P  S   ++          +  + 
Sbjct: 12  ALLLIACFQLGTWAFHRLTGLLINVLIAFFLALAIEPAVSWMSAR-GMRRGAATGLVFLG 70

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+      +  L      +++ +V       ++   V +W++    G + +EL    +  
Sbjct: 71  VLIFAAGFVTLLGSMLAGQIQNMVEDFP---KYLDSVIKWVN----GTFHTELSRLEVQD 123

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                   + +++ +    +   A   G +F    L      +  F+F  DG  + + L 
Sbjct: 124 SVLHSDWLQRYVRNSASGVLDVSAQVLGGLFQLLTLL-----LFAFYFAADGPRLRRALC 178

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           S+      A   +   I             ++A+  G+     +   G+P   ALGV   
Sbjct: 179 SVLPPAKQAEVLRAWEIAVDKTGGYLYSRGLMALISGIAHYILFQALGIPYAPALGVWVG 238

Query: 250 IMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +++  IP        A+ + +    + + A  + ++  I     +  L+P L    + + 
Sbjct: 239 LVSQFIPTIGTYLAGALPMLIAFTVDPWYAVWVLVFVVIYQQFENYLLQPKLTARTVDIH 298

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
               F  ++ G   +G +G  +    +A +       +       + 
Sbjct: 299 PAVAFGSVIAGTALLGAVGALVSIPAVATLQAFLAAYVKRYDVTDDP 345


>gi|255693730|ref|ZP_05417405.1| putative membrane protein [Bacteroides finegoldii DSM 17565]
 gi|260620481|gb|EEX43352.1| putative membrane protein [Bacteroides finegoldii DSM 17565]
          Length = 377

 Score = 79.5 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 62/334 (18%), Positives = 122/334 (36%), Gaps = 16/334 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L G   P   A +I +  +P+   F  K    S  L++   + ++    V + +L     
Sbjct: 31  LSGVLLPFFIAWLIAYMIYPLVKLFQYKLRLKSRILSIFCALFLISAIGVTVFYLL---- 86

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
             +  ++S++   N   +      +        SE   +++      +ILSE  +     
Sbjct: 87  --VPPMISEMSRMNDLLVTYLTNGAGNNVPKNLSEFIHEYVDLQALNRILSEENILAAIK 144

Query: 147 DFIPRFASRFGM---IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           D +PR  +       I      S I ++  +F    D  +I++    L  + +  +   +
Sbjct: 145 DTVPRLWTLLAESLNILFSIFTSFIILLYVVFILL-DYEAIAEGWLHLLPNKYRTFASNL 203

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
            R V   +   F G  ++A   G++    + +   P  +ALG+    + M+P    I F 
Sbjct: 204 VRDVQDGMNKYFRGQALVAFCVGILFSIGFLIIDFPMAIALGLFIGALNMVPYLQIIGFF 263

Query: 264 AVSIYLLI----KGNIFNATC--LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
              +  ++     G  F           A+   I D  L P ++G    L        L 
Sbjct: 264 PTVLLAILKAADTGENFWIIIACALAVFAVVQIIQDTFLVPKIMGKITGLNPAIILLSLS 323

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
                MG+LG+ I   L  L+   ++  I+  ++
Sbjct: 324 IWGSLMGMLGMIIALPLTTLMLSYYQRFIINKEK 357


>gi|25011220|ref|NP_735615.1| hypothetical protein gbs1169 [Streptococcus agalactiae NEM316]
 gi|76797902|ref|ZP_00780164.1| EpsX [Streptococcus agalactiae 18RS21]
 gi|77410564|ref|ZP_00786925.1| membrane protein, putative [Streptococcus agalactiae CJB111]
 gi|23095644|emb|CAD46828.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76586739|gb|EAO63235.1| EpsX [Streptococcus agalactiae 18RS21]
 gi|77163512|gb|EAO74462.1| membrane protein, putative [Streptococcus agalactiae CJB111]
          Length = 377

 Score = 79.5 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 61/344 (17%), Positives = 126/344 (36%), Gaps = 19/344 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI----ATVSVMCLFIVPLLFLF 82
           +  F      A II      +Y     K  + S  L  I    + +     FI  +++LF
Sbjct: 39  IFPFLMGAGIAYIINIVMS-VYERLYIKLFKGSRLLMAIKRSVSMILSYATFIGLIVWLF 97

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ---SLKILSET 139
              + ++   +S +++ +   +   + ++++      SE      +      +L   S+ 
Sbjct: 98  SIVIPDLISSLSSLLVIDTGALA--KLVNNLNENKQISEALNYMGTDKDLVSTLSGYSQQ 155

Query: 140 FLKTNGIDF--IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            LK        +    S      L+  +S IF I  L     +   + +Q + L +    
Sbjct: 156 ILKQVLSVLTNLLTSVSSIAATLLNVFVSFIFSIYVL----ANKEQLGRQFNLLIDTYLG 211

Query: 198 AYWKKI---SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           +  K       I+ +     F+  T+ A+  G +      +   P  + +GV+ A  A+I
Sbjct: 212 STGKTFHYVRHILHQRFHGFFVSQTLEAMILGSLTVIGMLIFQFPYALTVGVLVAFTALI 271

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P         +   L+   ++  A    L+  +        + P +VGG I LP +    
Sbjct: 272 PVVGAYIGVTIGFILIATESLTEAFLFVLFLILLQQFEGNVIYPKVVGGSIGLPSMWVLT 331

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            +  G    G+LG+ +   + A I  I K+ I+  +  + +  +
Sbjct: 332 AITIGGALWGILGMLLAVPVAATIYQIVKDHIIKRQTLRNRART 375


>gi|326693108|ref|ZP_08230113.1| permease [Leuconostoc argentinum KCTC 3773]
          Length = 367

 Score = 79.5 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 51/323 (15%), Positives = 110/323 (34%), Gaps = 16/323 (4%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS----TFLAVIATVSVMCLFIVPLLFL 81
           F+   FAP++ A  + +   P+ S     K            VI  +  + + +  L+ L
Sbjct: 40  FISTVFAPLVVAGFLYYILKPLVSLIQKIKIRGKVIPHQLAVVITFLGFLAMIVGALVVL 99

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E+  LV+ +                I   +  SE +     H        +T +
Sbjct: 100 VPTLIQEITNLVNALPSFLNDA-------QRIATEVVKSEWFDAL--HFSVEVEQVKTAV 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYC---LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                 F+   A   G +        ++++ + + LF+   DG  +   +  L       
Sbjct: 151 GKYAGSFLTVTAGTLGTVTSTVTTVTINLVTIPVILFYMLSDGNRLVPAIQKLFPARHAE 210

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              +++  +   I     G  I     G  +   Y L G P    LG+I  I  ++P   
Sbjct: 211 TISELTTKMDTTIEKYISGQAIEMGFVGASMAIGYLLIGQPYAWLLGIIAGITNIVPYLG 270

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P      ++ +    +      + +   I   +    + P ++G  + +  L     L+ 
Sbjct: 271 PWIGVVPALIIASTQSWKQVVLVLIVMTIVQQLDGNFIYPNVIGKSLAIYPLTIMILLMV 330

Query: 319 GVRTMGLLGLFIGPVLMALIAVI 341
                G++G+ +   + A++ V+
Sbjct: 331 AGNLWGIVGMILIVPVYAILRVV 353


>gi|256369147|ref|YP_003106655.1| permease, putative [Brucella microti CCM 4915]
 gi|255999307|gb|ACU47706.1| permease, putative [Brucella microti CCM 4915]
          Length = 382

 Score = 79.5 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 47/326 (14%), Positives = 110/326 (33%), Gaps = 20/326 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G M + ++F+++ S   L     P ++ + + +   P+      K   S    +++  + 
Sbjct: 20  GAMAFFVLFLVVFSSVLL-----PFVAGMALAYFLDPVADRLE-KVGLSRLAASIVILLI 73

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + + I+ L+ +      ++ + +S +         +             SE   K++  
Sbjct: 74  FLMILIIGLMIVVPILATQLADFISNLPGYITQLQSLLA--------NRDSEWLKKYIGI 125

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
             ++   + + L   G  F+          G   +D     +   +  F    D   +  
Sbjct: 126 DSTVIQQNLSSLLQQGAGFLSTLLQSLWNSGKSLIDIAGLFVVTPVVAFCMLLDWDRMVN 185

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +DS          ++I+R +   +     G   + +  G        L G+   + +G 
Sbjct: 186 SIDSWVPRKQLHTVRRIAREMNAAVAGFIRGQGTLCLILGTYYAIGLTLTGLNFGLLIGF 245

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
              +++ IP        A++I + +     +      +     +  FI    L+P LVG 
Sbjct: 246 FAGLISFIPYIGSFVGLALAIGVALVQFWPDWIMVCTVAAVFFLGQFIEGNILQPKLVGS 305

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLF 329
            + L  +   F L       G  G+ 
Sbjct: 306 SVGLHPVWLMFALFAFGSLFGFTGML 331


>gi|152979696|ref|YP_001345325.1| hypothetical protein Asuc_2044 [Actinobacillus succinogenes 130Z]
 gi|150841419|gb|ABR75390.1| protein of unknown function UPF0118 [Actinobacillus succinogenes
           130Z]
          Length = 354

 Score = 79.5 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 57/344 (16%), Positives = 116/344 (33%), Gaps = 17/344 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           +PQ +    I+    ++LYF  G  AP+L AL++ +      +   +K +        + 
Sbjct: 15  DPQAMGLAAILLFGFIALYFFSGLIAPLLIALVLAYLLEIPINFLNAKFKIPRLLAITLI 74

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
               + L  V +  L    + +   L+S +         +  W++ +P        +   
Sbjct: 75  LGGFIGLVAVIVFGLLPNLVGQTVNLLSDLPNMFNK---LHEWVATLPEHYPELVDYQLI 131

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            S   S +     F ++     +    +   +    + + +      +FF  +D  ++  
Sbjct: 132 DSLFSSTREKILAFGESAVKFSLSSIVNLVSIGIYAFLVPL-----MMFFMLKDKQALLS 186

Query: 187 QLDSLG---EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
            +        HL    W ++ + +   IR   L + I+A     V    +    +   + 
Sbjct: 187 GVTKFLPKNRHLASQVWTEMQQQIANYIRGKLLEIAIVA----AVTYVIFLFFQLRYPLL 242

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           L V   I  +IP  GA I    V++    + G       +     I   +    L PFL 
Sbjct: 243 LAVAVGISVLIPYVGAVIVTIPVALVAFFQFGAQATFWYIMTAYIISQLLDGNLLVPFLF 302

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
              + L  L     ++      G  G+F    L  L+  +    
Sbjct: 303 SEAVNLHPLTIIVAVLIFGGLWGFWGVFFAIPLATLVKAVVNAW 346


>gi|313892846|ref|ZP_07826425.1| putative membrane protein [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313442600|gb|EFR61013.1| putative membrane protein [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 373

 Score = 79.5 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 49/335 (14%), Positives = 114/335 (34%), Gaps = 11/335 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEES---------STFLAVIATVSVMCLFIVPLLFL 81
           F P++    I F    +   +                   L+++ +   + + +  +  +
Sbjct: 41  FVPLIVGACIAFVLDILVVRYERWLWPKSESGWRYKIRRPLSLVLSFVTISVIVYFIARM 100

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               ++    ++  V  + Q       W+  +   +  +   T   +      +      
Sbjct: 101 ALPQLVHSMSII--VASSPQLYTDFQTWMQHLTETIPMASNQTLMDTLSGESIVKYTREW 158

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            T G  +I           L+  L +IF I  L    R      + + +     +     
Sbjct: 159 GTKGGTYIVNAMGTVLSWTLNIGLGLIFAIYMLLDKERLMMQGKRIVKAYASDEWVNRVS 218

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            ++R+  +   + F+G  I A+  G+++G   WL  +     +  +  +  +IP      
Sbjct: 219 YVTRVAVQTFSNFFVGQFIDALILGVMVGITLWLFNIEYATTIACVIGLTGLIPLLGIYV 278

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
              +   +L+  +  +A    +   +   I    + P +VG  + LP L  F  ++ G  
Sbjct: 279 GGVIGAVMLLTVSPMDALIYVIILEVLHQIESNFIYPKIVGNSVGLPGLWVFAAVIVGGS 338

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            MG+ G+ IG  L+A    +    +     + E +
Sbjct: 339 LMGVTGMLIGVPLVATCYKLLMSDVDERLASNEGL 373


>gi|291087264|ref|ZP_06571876.1| putative permease [Clostridium sp. M62/1]
 gi|291075616|gb|EFE12980.1| putative permease [Clostridium sp. M62/1]
          Length = 398

 Score = 79.5 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 47/327 (14%), Positives = 105/327 (32%), Gaps = 13/327 (3%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEES--------STFLAVIATVSVMCLFIVPLLFLFYY 84
           P      I F      S    K                  I+ +  + L    ++ + + 
Sbjct: 37  PFALGGAIAFVINVPMSFLEKKMLGKIKENNKIGKKAARPISLLLTIILVAGVIILVMFG 96

Query: 85  GMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
            + ++ + +  ++ +    IP  + W+ +              L       I     L  
Sbjct: 97  VIPQLTQTMGNLMTSISDFIPQMQNWIREFSHDNQDIMKLVDQLQFQSDQAIKWGISLLG 156

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           NG+  +                +         +      ++  Q+  +     P      
Sbjct: 157 NGVGNMMNTTMSAVGSIASGLATFFISFSFACYILFQKENLHLQVRKVIFAFIPKQKADA 216

Query: 204 SRIVPKVIRSTFL----GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
              +  +   TF     G  + A+  G++      +  +P  + +G++ A  A++P    
Sbjct: 217 ILNICSLTYRTFANFLAGQCLEAVILGMMFVITLSILKMPYALLIGILIAFTALVPIFGA 276

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
               AV  +L+   N   A    +   +   I    + P +VGG + LP +     +  G
Sbjct: 277 FIGCAVGSFLIFMVNPKQAVLFIIVFLLLQQIEGNLIYPHVVGGSVGLPSIWVLAAVTIG 336

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESI 346
              MG++G+ I   L+++   I++E +
Sbjct: 337 GNLMGIIGMLIFIPLVSVFYTIFREFV 363


>gi|170759096|ref|YP_001787178.1| hypothetical protein CLK_1238 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406085|gb|ACA54496.1| putative membrane protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 364

 Score = 79.5 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 113/320 (35%), Gaps = 9/320 (2%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P   A  I +   P+   F +K +    F  +I  + V+ L I+ +       +  + 
Sbjct: 43  LVPFTWAFGIAYILNPLMKYFQNKFKLKRIFSIIITYIIVIGLLILFINTFVPKIIKNIG 102

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           +L           I   +W +D        ++  ++     ++  L      +N  +   
Sbjct: 103 DLFVHSPDYINQTI---QWFNDNIKYSKVYDMLMENYQISNNIPNLLNKI--SNLTNTFL 157

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP----AYWKKISRI 206
                  + F  + +  +F +I   +   D  S+ + L      LF     +      + 
Sbjct: 158 NTFLNTTIKFTSFLVRFVFGLIISIYLLLDKESLIENLKKFILALFGGKNYSKILSFFKE 217

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           V  V     +G +I ++  GL+  +      VP    +  I  I  MIP   P      +
Sbjct: 218 VDIVFSKYIIGKSIDSLIIGLMCFAGLTTMKVPYAALISFIVGITNMIPYFGPFIGMIPA 277

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
             + +  N   A  + ++  I        L P ++G  + L  +   F +  G  T G++
Sbjct: 278 FIITLFFNYIKAIWVLIFIIILQQFDGWYLGPKILGNQVGLSPIWIIFAITIGGGTFGVM 337

Query: 327 GLFIGPVLMALIAVIWKESI 346
           G+F+   + A+I +   + I
Sbjct: 338 GMFLSVPIAAIIKIYLDKYI 357


>gi|327314452|ref|YP_004329889.1| hypothetical protein HMPREF9137_2236 [Prevotella denticola F0289]
 gi|326944170|gb|AEA20055.1| putative membrane protein [Prevotella denticola F0289]
          Length = 359

 Score = 79.5 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 51/363 (14%), Positives = 131/363 (36%), Gaps = 16/363 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           M++T+   + I   +I   ++ + +    L G   P   A ++ +  +PI      K   
Sbjct: 1   MKQTITFDKFIRWALIALAVITAGFIINALSGALLPFFIAWLLAYLLYPIVKFVQYKLHV 60

Query: 58  SSTFLAVIATVSVMCLFI-VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
               L++I T++ +   I    LF+    + +   L+                 + +   
Sbjct: 61  PGRVLSIIITLAFVAAVITAIFLFIVPPMIDQFDRLMHVANRYLHETTHANNISAMVQRW 120

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
           +  ++   +            +T +       +    +   +  +  C+++++M    FF
Sbjct: 121 VMENQFEIEKFLKSPDFTNAIKTAMPKLFS--VIGQTASIVISVIASCITLLYM----FF 174

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
              D  ++++    +       +W  +++ V + + +   G  ++++  G +    + + 
Sbjct: 175 ILLDYETLTENWIKIFPKRVRPFWAGLAQDVERELNNYIRGQGLVSLCLGALFCIGFTII 234

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI----KGNIFNATC--LFLWGAIELF 290
             P  + +GV+  I+ ++P     +    +   L+     G  F           A+   
Sbjct: 235 DFPMAIGMGVLIGILNLVPYLHTFALIPTAFLALLKAADTGQNFWIIFGSALAVFAVVQI 294

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++D  + P ++G  + L        L      +G +GL +   L  LI   W+  +   K
Sbjct: 295 LMDMVITPKIMGKAMGLNPAILLLSLSVWGSLLGFIGLIVALPLTTLIIAYWQRYVTKEK 354

Query: 351 ENK 353
           E +
Sbjct: 355 EEQ 357


>gi|322387990|ref|ZP_08061597.1| membrane protein [Streptococcus infantis ATCC 700779]
 gi|321141263|gb|EFX36761.1| membrane protein [Streptococcus infantis ATCC 700779]
          Length = 387

 Score = 79.5 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 44/337 (13%), Positives = 116/337 (34%), Gaps = 1/337 (0%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             I+  I    + +  F + V+  +I+    + + +  +   E+      +  ++  + +
Sbjct: 36  IFILSKISFLFFPVIDFLSVVMLPVILSGLLFYLLNPLVDLMEKYKINRVLAISIIFIII 95

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            I+ ++ L        +++V        +     R + D+       + +   L    + 
Sbjct: 96  AILLIIGLAVAIPNLQRQVVIFAQNVPSYLEDADRVIGDL-VTKRLPDDFRPQLEQVLAN 154

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                T   +N       + S          +++I M   LF+  RDG  +   +     
Sbjct: 155 FSTQATAWASNISSKAVNWVSALISGTSQVIVALIIMPFMLFYLLRDGKGLRDYITQFLP 214

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           +       K+   V + + +   G   +A+   ++    + + G+   V LG+    + +
Sbjct: 215 NKLREPVGKVLSEVNQQLSNYVRGQITVAVIVAIMFIIFFKIIGLRYAVTLGITAGFLNL 274

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +P          ++ L +         + +   +E  I  + + P ++G  + +  +   
Sbjct: 275 VPYLGSFLAMIPALVLGLIAGPVMLLKVIIVFIVEQTIEGRFVSPLILGSQLNIHPITIL 334

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           F L+      G+ G+ +G  + A   V+        K
Sbjct: 335 FVLLTSGSMFGIWGVLLGIPIYASAKVVISAIFDWYK 371


>gi|289167764|ref|YP_003446033.1| membrane protein [Streptococcus mitis B6]
 gi|288907331|emb|CBJ22168.1| membrane protein [Streptococcus mitis B6]
          Length = 369

 Score = 79.5 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 41/311 (13%), Positives = 101/311 (32%), Gaps = 6/311 (1%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L    + + + PI +      + +     ++   +++   ++ +++     + ++ 
Sbjct: 42  MIPFLLGGFLYYLTNPIVNFLQKYFKINRIIGILLTLCALVWGLVIGVVYFLPILINQLT 101

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L++           +   LS  P            +        LS   +  N ++ + 
Sbjct: 102 SLIATSQTIYSRLQDLIVDLSTYPAFQNLD------IQATIQQLNLSYVDILQNILNSVT 155

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                         L II   + L +F  DG      L+         +   + + +   
Sbjct: 156 NSVGSVLSALFSTVLIIIMTPVFLVYFLLDGHKFLPMLERTVLKRDKLHIAGLLKNLNAT 215

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           I     G+ I AI  G +    Y + G+   +   + + +  +IP   P       I   
Sbjct: 216 IARYISGVAIDAIIIGCLAFIGYSVIGLKYALVFAIFSGLANLIPYVGPSIGLIPMIIAN 275

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           I  +        ++  +   +    L P +VG  +K+  +     L+      G++G+ +
Sbjct: 276 IFTDPHRMLIAVIYMLVVQQVDGNILYPRIVGSVMKVHPITILVLLLLSSNIYGVIGMIV 335

Query: 331 GPVLMALIAVI 341
                +++  I
Sbjct: 336 AVPTYSILKEI 346


>gi|163737418|ref|ZP_02144835.1| hypothetical protein RGBS107_17843 [Phaeobacter gallaeciensis
           BS107]
 gi|161388944|gb|EDQ13296.1| hypothetical protein RGBS107_17843 [Phaeobacter gallaeciensis
           BS107]
          Length = 355

 Score = 79.5 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 61/342 (17%), Positives = 121/342 (35%), Gaps = 18/342 (5%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             +I V L+ L     P +    I +   PI     S    S T    + TV  M LF+V
Sbjct: 16  AVVIAVVLWALGDVLLPFVLGAAIAYLIDPIADRLES-MGLSRTAATAVITVFAMLLFVV 74

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            LL +    + +M +L   +  A ++               +  +            +  
Sbjct: 75  ILLVVVPTLIYQMLDLAKVLPEAFKNL------------RDFVQQQAPSLFDEGSRAQQT 122

Query: 137 SETFLKTNGIDFIPRFASRFGM--IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
             +  +T     I       G     ++  +  + + +   +   D   +  ++D L   
Sbjct: 123 IVSIAQTLQSKAIGVLEGVVGSAVSLVNVLILFVIVPVVAVYLLLDWDRMVARIDELLPR 182

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 ++++  + KV+ S   GM  + +  G     A  L G+   +A+G I  ++  I
Sbjct: 183 DHAPTIRELAARIDKVLASFIRGMGTVCLILGTYYAVALMLVGLNFGLAVGFIAGLVTFI 242

Query: 255 PGGAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           P    +    ++I L +    G+ ++   +    AI   I    L P LVG  + L  + 
Sbjct: 243 PYLGALIGGVLAIGLALFQFWGDWWSIGMVAGVFAIGQVIEGNFLTPKLVGNSVGLHPVW 302

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               L       G +G+ I   + A + VI +  +    +++
Sbjct: 303 LLLALSVFGALFGFVGMLIAVPVAAALGVIARFLVEQYLDSR 344


>gi|325964271|ref|YP_004242177.1| permease [Arthrobacter phenanthrenivorans Sphe3]
 gi|323470358|gb|ADX74043.1| putative permease [Arthrobacter phenanthrenivorans Sphe3]
          Length = 418

 Score = 79.5 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 85/225 (37%), Gaps = 1/225 (0%)

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           + L    +  ++      +   A     +  ++      MI+ LFFF +DG  I      
Sbjct: 181 EQLDQARQGIVEFATSSQVRSGAITGLSVVTEFFAGAALMIVILFFFLKDGAKIWNFFLR 240

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                  A  +++     +V+     G  I+A+ + + +G+A  +  VP  + L +I  I
Sbjct: 241 PFSGAREAKLRRVGSRTLEVLGGYVRGTAIVALVDTVAIGAALLIMQVPLALPLAIIVFI 300

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            A IP  GA ++    ++  L+      A  +         +    L+P ++G  ++L  
Sbjct: 301 GAFIPLVGATVAGILAALVALVANGPVVALIVVAVVIAVNQLEGDLLQPIVMGKSLQLHA 360

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L     L  G    G++G  +   L A+   I +         ++
Sbjct: 361 LVILMALTAGTILAGIVGAVLSVPLAAVAWAIIQVWTAEDPNLED 405


>gi|293605887|ref|ZP_06688257.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292815674|gb|EFF74785.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 439

 Score = 79.5 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 42/332 (12%), Positives = 107/332 (32%), Gaps = 9/332 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            + +  +L SL   + F  PV+ A+++ +   P  +     +         I  + +M +
Sbjct: 97  TLTVLAVLFSLKMAQEFIVPVVMAIVVAYALDPAVALMERVRVPRP-----IGIMLLMAI 151

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             + L  L Y    ++  +V  +   ++        L+   G +         +      
Sbjct: 152 IAIGLAGLVYATQSQVSSIVEALPEISRKISRTVGGLTSGHGSLLERLKGAASVLQDTGG 211

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                  +       +  F          +    I  +  +FF    G +  ++   +  
Sbjct: 212 TPSGRQVVVAKSDAGLSEFLLWGSKGLAAFLGQAIMSVFLVFFLLLSGNAFKRKFVKVAG 271

Query: 194 HLFPAYW--KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                      +   +   I      M +  +  G++   A+ + G+ +     V+   +
Sbjct: 272 KTLSQKKISVHMLDQINSSIHMYMAMMLVTNVALGVLSWGAFRMLGLENAATWAVVAGAL 331

Query: 252 AMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            +IP  G  ++     I  L++ G I  A  +     +   ++   +  ++ G   K+  
Sbjct: 332 HIIPYFGPLLTAVGTGIAALMQFGEIGPALQVAGSSVVIALLIGVLVTTWMSGRIAKMNS 391

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +  F  L+      G+ G  +   +  +  V+
Sbjct: 392 VAVFIVLLLFTWLWGIWGTLLSVPIAFIAKVV 423


>gi|37680691|ref|NP_935300.1| permease [Vibrio vulnificus YJ016]
 gi|320155639|ref|YP_004188018.1| putative permease PerM ( YfgO) [Vibrio vulnificus MO6-24/O]
 gi|37199440|dbj|BAC95271.1| predicted permease [Vibrio vulnificus YJ016]
 gi|319930951|gb|ADV85815.1| putative permease PerM (YfgO) [Vibrio vulnificus MO6-24/O]
          Length = 356

 Score = 79.5 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 52/352 (14%), Positives = 123/352 (34%), Gaps = 14/352 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +    I+    V++YF     AP+L A+++ +   WP+    + +     T   + 
Sbjct: 15  DPHAVSLVAILLFGFVTIYFFGHLLAPLLVAIVLAYLLEWPVAQ--LRRFGVPRTVGVIA 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + L ++ L  L      ++  L++ +         + ++++ +P           
Sbjct: 73  VILLFIGLMLIALFGLIPTIWTQVGNLINDIPNMYNG---LQQFIASLPE----RYPELA 125

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +L   +++   ++  +   G   +    +   +      + +I + + +FF  +D   + 
Sbjct: 126 NLQIVEAIVTNAKNKVLGMGESVVKGSLASL-ISIATLAVYLILVPLLVFFLLKDKEEMM 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    L          K+   + + I +   G  +  +  G V    + +  +     L 
Sbjct: 185 RMASGLLPK-NRNLANKVWHEMNEQISNYIRGKVLEILIVGGVSYVTFAILDLRYSALLA 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V   +  +IP  GA      V+I  L + G       L +   I   +    L P L   
Sbjct: 244 VAVGLSVLIPYIGAAAVTVPVAIVALFQWGISTEFYTLLIAYGIIQALDGNVLVPVLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            + L  +     ++      G  G+F    L  L+  +WK      +   + 
Sbjct: 304 AVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWKALPSQDEHEAQP 355


>gi|153816489|ref|ZP_01969157.1| hypothetical protein RUMTOR_02742 [Ruminococcus torques ATCC 27756]
 gi|317500769|ref|ZP_07958986.1| hypothetical protein HMPREF1026_00929 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089753|ref|ZP_08338647.1| hypothetical protein HMPREF1025_02230 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846185|gb|EDK23103.1| hypothetical protein RUMTOR_02742 [Ruminococcus torques ATCC 27756]
 gi|316897862|gb|EFV19916.1| hypothetical protein HMPREF1026_00929 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330403636|gb|EGG83191.1| hypothetical protein HMPREF1025_02230 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 380

 Score = 79.5 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 61/376 (16%), Positives = 135/376 (35%), Gaps = 22/376 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLK--------GFFAPVLSALIIGFTSWPIYSSFIS 53
           +E M   + ++ + I+ +I +  Y L         G   P L    I F      S F  
Sbjct: 5   KENMKKMRELIVFTIILLIALWNYKLLFEWIGFAFGIVTPFLIGGGIAFVLNVPMSFFEE 64

Query: 54  KKEESST---------FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
               +               ++ V  +   I  ++ + +  + E+ + V  +    Q  +
Sbjct: 65  TLFGNKRVKEKKLAKRLARPLSLVLTIVAVIGVVVLVMFVVIPELAQTVLSLGKTIQAFV 124

Query: 105 PVPR-WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA----SRFGMI 159
           P  + +L ++         W  +L       + S      NG   +              
Sbjct: 125 PEAQHFLEELFTDNSEIRAWLNNLDVDLDKLLDSVIAFFRNGAGNVLNSTVYAIGSIVNG 184

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
              + ++ +F    L    + G  + + + +  +  +     K+  +  K   +   G  
Sbjct: 185 VTTFVIAFVFACYILLQKEKLGVQVKKVMHAFLKEKWEKRCLKVCTLTSKTFSNFLTGQC 244

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNAT 279
           + A+  G +   A  L  +P  + +GV+ A  A+IP         V  +L++  +   A 
Sbjct: 245 LEALILGSMFFVAMSLFKMPYALLVGVLVAFTALIPIFGAFIGCVVGAFLILMVDPLQAL 304

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              +   +   I    + P +VG  + LP +     +  G   MG++G+ I   L++++ 
Sbjct: 305 FFVIMFLVLQQIEGNLIYPKVVGNSVGLPSIWVLAAVTIGGSLMGVVGMLIFIPLVSVVY 364

Query: 340 VIWKESIMAIKENKEK 355
            +++ES+    E K++
Sbjct: 365 TLFRESVYKRLEQKQR 380


>gi|111657945|ref|ZP_01408653.1| hypothetical protein SpneT_02000864 [Streptococcus pneumoniae
           TIGR4]
          Length = 343

 Score = 79.5 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 42/316 (13%), Positives = 107/316 (33%), Gaps = 6/316 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L     P L      + + PI +      + +     +I   +++   ++ +++L    
Sbjct: 11  VLNTIMIPFLLGGFFYYLTNPIVTFLNKVCKLNRLLGILITLCTLVWGMVIGVVYLLPIL 70

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  L   ++ +      V   + D+        L  +      +L  +    +  N 
Sbjct: 71  INQLSSL---IISSQTIYSRVQDLIIDLSNYPALQNLDVEATIQQLNLSYVD---ILQNI 124

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           ++ +           +   L +I   + L +F  DG      L+         +   + +
Sbjct: 125 LNSVSNSVGSVLSALISTVLILIMTPVFLVYFLLDGHKFLPMLERTILKRDRLHIAGLLK 184

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   I     G++I AI  G +    Y + G+   +   + + +  +IP   P      
Sbjct: 185 NLNATIARYISGVSIDAIIIGCLAYIGYSIIGLKYALVFAIFSGVANLIPYVGPSIGLIP 244

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            I   I  +        ++  +   +    L P +VG  +K+  +     L+      G+
Sbjct: 245 MIIANIFTDPHRLLIAVIYMLVVQQVDGNILYPRIVGSVMKVHPITILVLLLLSSNIYGV 304

Query: 326 LGLFIGPVLMALIAVI 341
           +G+ +     +++  I
Sbjct: 305 VGMIVAVPTYSILKEI 320


>gi|161502354|ref|YP_001569466.1| hypothetical protein SARI_00387 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863701|gb|ABX20324.1| hypothetical protein SARI_00387 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 355

 Score = 79.5 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 52/347 (14%), Positives = 115/347 (33%), Gaps = 14/347 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +P+ I   +I+      L+F  G  AP+L A+++ +   WP  +   +       
Sbjct: 10  RRRFSDPEAIALLVILVAGFSILFFFSGLLAPLLVAIVLAYLLEWP-TARLQAIGCSRRW 68

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             +++  + V  L ++  + +       +  +     + N+            P  M A 
Sbjct: 69  ATSIVLILFVGILLLMAFVVMPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +     +    +  + ++ +K +    +           L   + ++ + + +FF  +D
Sbjct: 129 IIDAMAENMRTRMLNMGDSVVKYSLASLV---------GLLTLAVYLVLVPLMVFFLVKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +          ++   + + I +   G  +  +  G+     + L G+  
Sbjct: 180 KEQMLNAVRRVLPRNRGLAG-QVWNEMNQQITNYIRGKVLEMVVVGVATWLVFLLFGLNY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V+     +IP  GA +    V  + L   G        F    I   +    L P
Sbjct: 239 SLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGLGTEFWSCFAVYLIIQALDGNLLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L    + L  L     +V      G  G+F    L  LI  +    
Sbjct: 299 VLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVHAW 345


>gi|298484321|ref|ZP_07002483.1| membrane protein [Bacteroides sp. D22]
 gi|298269511|gb|EFI11110.1| membrane protein [Bacteroides sp. D22]
          Length = 360

 Score = 79.5 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 63/336 (18%), Positives = 125/336 (37%), Gaps = 16/336 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L G   P   A +I +  +P+   F  K    S  +++  ++ ++ +  V L +L     
Sbjct: 31  LSGVLLPFFIAWLIAYMIYPLVKFFQYKLRLKSRIISIFCSLFLITVIGVTLFYLL---- 86

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
             +  ++S++   N   +      +        SE   +++      ++LSE  +     
Sbjct: 87  --VPPMISEIGRMNDLLVTYLTNGAGNNVPKNLSEFIHENIDLQALNRVLSEENILATIK 144

Query: 147 DFIPR---FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           D +PR     +    I      S I ++  +F    D  +I++    L  + +  +   +
Sbjct: 145 DTVPRVWTLLAESLNILFSILASFIILLYVIFILL-DYEAIAEGWLHLLPNKYRTFASNL 203

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
              V   +   F G  ++A   G++    + +   P  +ALG+    + M+P    I F 
Sbjct: 204 VHDVQDGMNRYFRGQALVAFCVGILFSIGFLIIDFPMAIALGLFIGALNMVPYLQIIGFL 263

Query: 264 AVSIYLLI----KGNIFNATC--LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
              +  ++     G  F           AI   I D  L P ++G    L        L 
Sbjct: 264 PTILLAILKAADTGQNFWIIIACALAVFAIVQIIQDTFLVPKIMGKITGLNPAIILLSLS 323

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                MG+LG+ I   L  L+   ++  I+  ++NK
Sbjct: 324 IWGSLMGMLGMIIALPLTTLMLSYYQRFIINKEKNK 359


>gi|294792910|ref|ZP_06758056.1| putative membrane protein [Veillonella sp. 6_1_27]
 gi|294455855|gb|EFG24219.1| putative membrane protein [Veillonella sp. 6_1_27]
          Length = 373

 Score = 79.5 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 51/335 (15%), Positives = 114/335 (34%), Gaps = 11/335 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEES---------STFLAVIATVSVMCLFIVPLLFL 81
           F P++    I F    +   +                   L+++ +   + + +  +  +
Sbjct: 41  FVPLIVGACIAFVLDILVVRYERWLWPKCDSGWKYKIRRPLSLLLSFVTISVIVYFIARM 100

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               ++    ++  V  + Q       W+  I   +  +   T   +             
Sbjct: 101 ALPQLIHSMSII--VAASPQLYTDFQTWMQHITETIPMASNQTIIDALSGENIAKYTREW 158

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            T G  +I           L+  L +IF +  L    R      + L +     + +   
Sbjct: 159 GTKGGTYIVNAMGTVLSWTLNIGLGLIFAVYMLLDKERLMLQGKRILKAYASDEWVSRVS 218

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            ++R+  +   + F+G  I A+  G+++G   WL  +     +  +  +  +IP      
Sbjct: 219 YVTRVAVQTFSNFFVGQFIDALVLGVMVGITLWLFNIEYATTIACVIGLTGLIPLLGIYV 278

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
              +   +L+  +  +A    +   I   I    + P +VG  + LP L  F  ++ G  
Sbjct: 279 GGIIGAVMLLTVSPMDALIYVIILEILHQIESNFIYPKIVGNSVGLPGLWVFAAVIVGGS 338

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            MG+ G+ IG  L+A    +    +     + E +
Sbjct: 339 LMGVTGMLIGVPLVATCYKLIMTDVDGRLASNEGL 373


>gi|154687227|ref|YP_001422388.1| YubA [Bacillus amyloliquefaciens FZB42]
 gi|154353078|gb|ABS75157.1| YubA [Bacillus amyloliquefaciens FZB42]
          Length = 386

 Score = 79.5 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 49/333 (14%), Positives = 116/333 (34%), Gaps = 5/333 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           FI    +  LK    PV+   I+ +   PI    + K      +  ++  + ++ L  + 
Sbjct: 42  FIFTPIIVLLKTIALPVILTGIVYYLLNPIVD-ILEKIRVKRVYSILLLYLIIIGLITIT 100

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           ++ +  +   ++  L+  +         V      + G  + ++       +   L    
Sbjct: 101 VVSIIPFLKEQIMSLIDNLPKYVDI---VEDQTKSLIGSDFVNQAQKTMNINISDLANKV 157

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
                T          +  G +  +  +SI+ +   LF+  +DG  +   +         
Sbjct: 158 SAQAATIANSTFTGVGNFIGALT-EVIISIVTVPFILFYLLKDGKKLPIYILKFVPTRLK 216

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   +   + S   G  I++   G +L   Y + G+     L VI A  +++P  
Sbjct: 217 EQTYTMLSEMNHRLSSYIRGQVIVSFCIGFLLFIGYLIIGLDYASLLAVIAACTSVVPYL 276

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P      +I + +  +      L +   +   +  K + P ++G  + +  +   F L+
Sbjct: 277 GPTIAITPAIIIALVTSPLMLLKLAIVWTVVQLVEGKLISPQIMGKNLHIHPITIIFVLL 336

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
              +  G++G+ +     A+I V+        K
Sbjct: 337 TAGKLFGVVGIILAIPGYAVIKVVTTHLFDWFK 369


>gi|1620467|emb|CAA67775.1| membrane protein [Streptococcus pneumoniae]
          Length = 369

 Score = 79.5 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 113/318 (35%), Gaps = 10/318 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L     P L    + + + PI +      + +     +I   +++   ++ +++L    
Sbjct: 37  VLNTIMIPFLLGGFLYYLTNPIVTFLNKVCKLNRLLGILITLCTLVWGMVIGVVYLLPIL 96

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  L   ++ +      V   + D+        L  +      +L  +    +  N 
Sbjct: 97  INQLSSL---IISSQTIYSRVQDLIIDLSNYPALQNLDVEATIQQLNLSYVD---ILQNI 150

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           ++ +           +   L +I   + L +F  DG      L+         +   + +
Sbjct: 151 LNSVSNSVGSVLSALISTVLILIMTPVFLVYFLLDGHKFLPMLERTILKRDRLHIAGLLK 210

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTA 264
            +   I     G++I AI  G +    Y + G+   +   + + +  +IP  G  I    
Sbjct: 211 NLNATIARYISGVSIDAIIIGCLAYIGYSIIGLKYALVFAIFSGVANLIPYVGPSIGLIP 270

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
           + I  +    + +   + +   + +  VD   L P +VG  +K+  +     L+      
Sbjct: 271 MIIANIFT--VPHRLLIAVIYMLVVQQVDGNILYPRIVGSVMKVHPITILVLLLLSSNIY 328

Query: 324 GLLGLFIGPVLMALIAVI 341
           G++G+ +     +++  I
Sbjct: 329 GVVGMIVAVPTYSILKEI 346


>gi|332076154|gb|EGI86620.1| hypothetical protein SPAR68_0878 [Streptococcus pneumoniae GA41301]
          Length = 328

 Score = 79.5 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 41/311 (13%), Positives = 107/311 (34%), Gaps = 6/311 (1%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L    + + + PI +      + +     +I   +++   ++ +++L    + ++ 
Sbjct: 1   MIPFLLGGFLYYLTNPIVTFLNKVCKLNRLLGILITLCTLVWGMVIGVVYLLPILINQLS 60

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L   ++ +      V   + D+        L  +      +L  +    +  N ++ + 
Sbjct: 61  SL---IISSQTIYSRVQDLIIDLSNYPALQNLDVEATIQQLNLSYVD---ILQNILNSVS 114

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     +   L +I   + L +F  DG      L+         +   + + +   
Sbjct: 115 NSVGSVLSALISTVLILIMTPVFLVYFLLDGHKFLPMLERTILKRDRLHIAGLLKNLNAT 174

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           I     G++I AI  G +    Y + G+   +   + + +  +IP   P       I   
Sbjct: 175 IARYISGVSIDAIIIGCLAYIGYSIIGLKYALVFAIFSGVANLIPYVGPSIGLIPMIIAN 234

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           I  +        ++  +   +    L P +VG  +K+  +     L+      G++G+ +
Sbjct: 235 IFTDPHRLLIAVIYMLVVQQVDGNILYPRIVGSVMKVHPITILVLLLLSSNIYGVVGMIV 294

Query: 331 GPVLMALIAVI 341
                +++  I
Sbjct: 295 AVPTYSILKEI 305


>gi|237718220|ref|ZP_04548701.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229452404|gb|EEO58195.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 360

 Score = 79.5 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 63/336 (18%), Positives = 125/336 (37%), Gaps = 16/336 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L G   P   A +I +  +P+   F  K    S  +++  ++ ++ +  V L +L     
Sbjct: 31  LSGVLLPFFIAWLIAYMVYPLVKFFQYKLRLKSRIISIFCSLFLITVIGVTLFYLL---- 86

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
             +  ++S++   N   +      +        SE   +++      ++LSE  +     
Sbjct: 87  --VPPMISEIGRMNDLLVTYLTNGAGNNVPKNLSEFIHENIDLQALNRVLSEENILAAIK 144

Query: 147 DFIPR---FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           D +PR     +    I      S I ++  +F    D  +I++    L  + +  +   +
Sbjct: 145 DTVPRVWTLLAESLNILFSILASFIILLYVIFILL-DYEAIAEGWLHLLPNKYRTFASNL 203

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
              V   +   F G  ++A   G++    + +   P  +ALG+    + M+P    I F 
Sbjct: 204 VHDVQDGMNRYFRGQALVAFCVGILFSIGFLIIDFPMAIALGLFIGALNMVPYLQIIGFL 263

Query: 264 AVSIYLLI----KGNIFNATC--LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
              +  ++     G  F           AI   I D  L P ++G    L        L 
Sbjct: 264 PTILLAILKAADTGQNFWIIIACALAVFAIVQIIQDTFLVPKIMGKITGLNPAIILLSLS 323

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                MG+LG+ I   L  L+   ++  I+  ++NK
Sbjct: 324 IWGSLMGMLGMIIALPLTTLMLSYYQRFIINKEKNK 359


>gi|237732470|ref|ZP_04562951.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226908009|gb|EEH93927.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 354

 Score = 79.5 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 53/351 (15%), Positives = 121/351 (34%), Gaps = 22/351 (6%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPI----YSSFISKKE 56
           R    +P+ I   +I+      L+F  G  AP+L A+++ +   WP     +     +  
Sbjct: 10  RRRFSDPEAIALLIILVAGFGILFFFSGLLAPLLVAIVLAYLLEWPTVRLEHIGCSRRWA 69

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
            S   +  +  + +M   ++P+ +    G+  ++++   +   +     +PR    +   
Sbjct: 70  TSIVLVVFVGILLLMAFVVMPVAW--QQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDA 127

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
                +     S   ++             D + +++    +  L   + ++ + + +FF
Sbjct: 128 GIIDAMAENMRSRMLTM------------GDSVVKYSLASLVGLLTLAVYLVLVPLMVFF 175

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
             +D   +   +  +          ++ + + + I +   G  +  +  G+     + L 
Sbjct: 176 LIKDKGQMLNAVRRVLPRNRGLAG-QVWKEMNQQITNYIRGKVLEMVVVGVATWLGFLLF 234

Query: 237 GVPSHVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           G+   + L V+     +IP  GA +    V  + L   G        F    I   +   
Sbjct: 235 GLNYSLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGLGTEFWSCFAVYLIIQALDGN 294

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L P L    + L  L     +V      G  G+F    L  LI  +    
Sbjct: 295 LLVPVLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVMHAW 345


>gi|168216347|ref|ZP_02641972.1| putative membrane protein [Clostridium perfringens NCTC 8239]
 gi|182381331|gb|EDT78810.1| putative membrane protein [Clostridium perfringens NCTC 8239]
          Length = 366

 Score = 79.5 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 54/336 (16%), Positives = 116/336 (34%), Gaps = 4/336 (1%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           ++ +++ +     P L A II +   PI + F  K + S     VI  +  +    +   
Sbjct: 34  VMSAIHTILTVLLPFLLAFIIAYILNPIVNLFSKKFKLSRGISIVITYLIFVTSISLAAT 93

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ-SLKILSE 138
           +L       + EL+  +         V    ++I       E    +L H   +  I   
Sbjct: 94  YLLPKLYTSLIELIDNIPAFTN---YVQNLFTEIMASFKVPEGINSYLPHGDTNKLITFI 150

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             + T   +++   A       +++    +  I  L    +     S+    +       
Sbjct: 151 GSMVTVLSNWLLDAAISLTSSIINWIFGFLISIYVLVDKDKFLAHSSKVTRIIFGKDLGN 210

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              +  +I+ + I +      I ++  G++      +      + L V+  I  MIP   
Sbjct: 211 EILEFIKILNEKIGTYVGIKAIDSLIIGVLAFIGLTIMKSEYALLLSVVVGITNMIPYFG 270

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P     V  ++ +  +   A  + ++  I        L P L+G  + L       G+  
Sbjct: 271 PFIGMVVGFFINVFISPMKAVIVLIYLFILQQFDAWYLDPKLIGNRVGLSPFLVILGVTL 330

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G    G +G+ +G  +M++I +   + I   +   E
Sbjct: 331 GGAIYGPIGMILGSPVMSVIRIYTLKLIKKFEYRAE 366


>gi|212693716|ref|ZP_03301844.1| hypothetical protein BACDOR_03236 [Bacteroides dorei DSM 17855]
 gi|237709238|ref|ZP_04539719.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237724467|ref|ZP_04554948.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265754915|ref|ZP_06089829.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|212663737|gb|EEB24311.1| hypothetical protein BACDOR_03236 [Bacteroides dorei DSM 17855]
 gi|229437026|gb|EEO47103.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229456623|gb|EEO62344.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263234526|gb|EEZ20105.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 378

 Score = 79.5 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 57/366 (15%), Positives = 127/366 (34%), Gaps = 21/366 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFL----KGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M +  +     +R ++  ++++ + +L     G   P   A +I +  +P+   F  K  
Sbjct: 1   MLQKKITFDSFIRGILTAVVIIGILYLVNQLSGVLLPFFVAWLIAYLIYPMVIFFQHKLR 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE----MKELVSKVVLANQHGIPVPRWLSD 112
             +  +++   + V+   I          ++E    +KEL+++  +       +P  +++
Sbjct: 61  LKNRVISIFVVLLVLLSIITLAFIGLVPPIIEEFGKLKELLTEYFIEGSKQAAIPGTVAN 120

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
                    L      +  +        L       +    ++   I +    S I ++ 
Sbjct: 121 F-IKEHIDMLKIHEALNENNFANTMRNVLPQ-----VWTLLTQSVNIVVSVFTSFIILLY 174

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
             FF   D  +I++    L          +I   V   +   F G   +A   G++    
Sbjct: 175 T-FFILLDYEAIARGWIKLVPIKHREMTIRIVTDVQDGMNKYFRGQAFVAFCVGILFSIG 233

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI----KGNIFNATCL--FLWGA 286
           + +   P  +  G+   ++ M+P    I+F    +  L+     G  F       FL   
Sbjct: 234 FLIIDFPLAIGFGLFIGLLNMVPYLQLIAFIPTVLLALLKAADTGENFWWILFCAFLVFC 293

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           I   I D  + P ++G    L        L      MG++G+ I     +L+   ++  I
Sbjct: 294 IVQIIQDGLIVPKVMGKITGLNPAIILLSLSVWGALMGIVGMIIALPCTSLMLSYYQRYI 353

Query: 347 MAIKEN 352
              ++ 
Sbjct: 354 RIKEKE 359


>gi|222480000|ref|YP_002566237.1| protein of unknown function UPF0118 [Halorubrum lacusprofundi ATCC
           49239]
 gi|222452902|gb|ACM57167.1| protein of unknown function UPF0118 [Halorubrum lacusprofundi ATCC
           49239]
          Length = 341

 Score = 79.1 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 50/315 (15%), Positives = 121/315 (38%), Gaps = 29/315 (9%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC--LFIVPLLFLFYYGMLEMKE 91
           V+ A+ + +  +PI    + +             ++ +   + +VPLL++ Y    E+ E
Sbjct: 31  VVFAVTVAYVLYPICQWLVGRGLSRRIACVGTTVIAFVAAAILVVPLLYVLYRRRAELIE 90

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           ++ ++                +P  +   EL  + + +  + ++            ++ +
Sbjct: 91  ILEQIPDV-------------VPISVGGFELVIEMVPYVAAAEV------------WVRQ 125

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
            A           L ++     ++       S+   +  +    +     ++     + +
Sbjct: 126 VALALAAAAPRLVLELVVFTFLVYGLLYRPGSVEAAVFGVVPAEYHDIPTRLHERTRETL 185

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLL 270
            S ++     A G  ++    +W  G  S V L VI  ++  IP  G  +   A+++  L
Sbjct: 186 YSIYVLQAATAAGTSVLAFVVFWALGYGSPVLLAVIAGVLQFIPIIGPSVLVVALAVGDL 245

Query: 271 IKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           +      A  + + G + +  V D  +R  L     ++     F G VGG+ T+G +GL 
Sbjct: 246 LVEETGRAIAVLVLGLVLVSFVPDAVIRTQLADWTGRISPGLYFVGFVGGILTLGAVGLI 305

Query: 330 IGPVLMALIAVIWKE 344
           +GP++++L+  +   
Sbjct: 306 VGPLVVSLLLEVIDM 320


>gi|311064797|ref|YP_003971522.1| hypothetical protein BBPR_1452 [Bifidobacterium bifidum PRL2010]
 gi|310867116|gb|ADP36485.1| Conserved hypothetical membrane spanning protein with DUF20 domain
           [Bifidobacterium bifidum PRL2010]
          Length = 534

 Score = 79.1 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 38/338 (11%), Positives = 110/338 (32%), Gaps = 19/338 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGF----TSWPIYSSFISKKEESSTFLAVIATVS 69
            +I     + ++   G  + ++  ++I         P+  S +          + ++ + 
Sbjct: 35  TVIAVFAAIFVWTSWGKISTIVLDVVISIFIALAVEPLVVSMVRH-GWKRGLASAVSLIG 93

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +  + +  L       + ++  +V  +       +                +  +  +  
Sbjct: 94  LAVIVMALLTLFGNMFVQQLISMVKGLPSIYTEIVDA------------VKQYTSFDMPK 141

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            ++L +     ++T+ I      A    M    + L+++ +++  ++    G  + + L 
Sbjct: 142 IENLGMEIFKNVQTSWITDFAGQALTTTMGVFSFLLNLLTVLMVTYYISAAGPKMRRSLC 201

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                     +     +V + I       +I+A            +  VP  + L +   
Sbjct: 202 QWLGPNTQRRFLLGWTVVQEQISGFLFSRSILAAINATCTAVFLEIIHVPYWLPLALFCG 261

Query: 250 IMA-MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           I++  +P  G  I      ++      ++    + ++  +   I +  L P +    + L
Sbjct: 262 IVSQFVPTVGTYIGGALPVLFAWGSNGLWYGVGVLVFIIVYQQIENLILSPKVSQRTMDL 321

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
                F  ++      G LG F+   + A +  I+K  
Sbjct: 322 NPCVAFLAVLVMGALFGALGAFLALPVTASMQAIFKVY 359


>gi|282848785|ref|ZP_06258179.1| putative membrane protein [Veillonella parvula ATCC 17745]
 gi|282581499|gb|EFB86888.1| putative membrane protein [Veillonella parvula ATCC 17745]
          Length = 373

 Score = 79.1 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 113/335 (33%), Gaps = 11/335 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEES---------STFLAVIATVSVMCLFIVPLLFL 81
           F P++    I F    +   +                   L+++ +   + + +  +  +
Sbjct: 41  FVPLIVGACIAFVLDILVVRYERWLWPKCGSGWKYKIRRPLSLLLSFVTISVIVYFIARM 100

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               ++    ++  V  + Q       W+  I   +  +   T   +             
Sbjct: 101 ALPQLIHSMSII--VAASPQLYTDFQTWMQHITETVPMASNQTIIDALSGENIAKYTREW 158

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            T G  +I           L+  L +IF +  L    R      + L +     +     
Sbjct: 159 GTKGGTYIVNAMGTVLSWTLNIGLGLIFAVYMLLDKERLMLQGKRILKAYASDEWVNRVS 218

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            ++R+  +   + F+G  I A+  G+++G   WL  +     +  +  +  +IP      
Sbjct: 219 YVTRVAVQTFSNFFVGQFIDALVLGVMVGITLWLFNIEYATTIACVIGLTGLIPLLGIYV 278

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
              +   +L+  +  +A    +   +   I    + P +VG  + LP L  F  ++ G  
Sbjct: 279 GGIIGAVMLLTVSPMDALIYVIILEVLHQIESNFIYPKIVGNSVGLPGLWVFAAVIVGGS 338

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            MG+ G+ IG  L+A    +    +     + E +
Sbjct: 339 LMGVTGMLIGVPLVATCYKLIMTDVDGRLASNEGL 373


>gi|212638351|ref|YP_002314871.1| putative permease [Anoxybacillus flavithermus WK1]
 gi|212559831|gb|ACJ32886.1| Predicted permease [Anoxybacillus flavithermus WK1]
          Length = 372

 Score = 79.1 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 61/339 (17%), Positives = 124/339 (36%), Gaps = 12/339 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             ++   L SLY++     P L AL I F   P+      K +       ++  + ++ L
Sbjct: 16  IFVIIAGLASLYYVSTLTYPFLIALAITFFINPVVDVLEKKAKMPRALAVIVVLIFLLAL 75

Query: 74  FIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHP 130
               +  L    +   + L + V     +  I + ++++   IP     + L+    +  
Sbjct: 76  VAGLVTLLVAEIVTGTQYLATVVPNHFQKLVIYIEQFVASQIIPLYNQLATLFKNLDTSQ 135

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMI-------FLDYCLSIIFMIIALFFFYRDGFS 183
           Q   + +   + T     + +F                ++    IF ++A FF  +D + 
Sbjct: 136 QDTIMTNIQSVGTKIATTVGQFIQNILQNIPSIIGWLPNFATIFIFSLLATFFISKDWYR 195

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +      L          K+   + K +         +     L++     +  V   + 
Sbjct: 196 LKALFQKLLPTKVQTSTTKVFAELKKALFGFLKAQATLISITTLIVLVGLLVLRVEYAIT 255

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           + +I  I+ ++P  G  + F    +Y  + GN   A  L +   + L    + + P L+ 
Sbjct: 256 IALIIGIVDVLPYLGTGLVFVPWIVYAAMSGNTHFAIGLGVLYVVVLVQ-RQVMEPKLLS 314

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             I L  L T   L  G + +G LGL +GPVL+ +   +
Sbjct: 315 SNIGLDPLATLIALFVGFKLIGFLGLIVGPVLLVIGRTL 353


>gi|90414071|ref|ZP_01222054.1| putative permease PerM [Photobacterium profundum 3TCK]
 gi|90324866|gb|EAS41394.1| putative permease PerM [Photobacterium profundum 3TCK]
          Length = 356

 Score = 79.1 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 48/339 (14%), Positives = 113/339 (33%), Gaps = 14/339 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +    I+     ++YF     AP+L A+++ +   WP+    + +     T   ++
Sbjct: 15  DPHAVSLIAILLGGFFTIYFFGNLIAPLLVAIVLAYLLEWPVMR--LERLGLPRTVAVLV 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +    L ++    L      ++    + V         +  ++S +P          +
Sbjct: 73  VLLIFASLMVMAFFGLVPTIWHQVGNFAADVPTMFN---DLQHYVSSLPERYPDFVQPHQ 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            ++   +L+       ++     +    S          + +I + + +FF  +D   + 
Sbjct: 130 AITFMTTLREKVMGLGESVVKGSLASLVS-----LATIAVYLILVPLLVFFLLKDKDEML 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +  +          K+   + + I +   G        G+     + +  +   V LG
Sbjct: 185 ATMSGILPK-NRRLTSKVGAEMNEQISNYIRGKVTEIFIIGIASYITFAVMDLRYAVLLG 243

Query: 246 VITAIMAMIP-GGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V+  +  +IP  GA      V+ + L   G   +   L     +   +    L P L   
Sbjct: 244 VLVGLSVLIPYIGAAAVTVPVAMVGLFQWGLTPDFWWLLAAYGVIQALDGNVLVPVLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            + L  +     ++      G  G+F    L  L+  +W
Sbjct: 304 AVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVW 342


>gi|304570643|ref|YP_832075.2| hypothetical protein Arth_2596 [Arthrobacter sp. FB24]
          Length = 398

 Score = 79.1 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 44/320 (13%), Positives = 106/320 (33%), Gaps = 11/320 (3%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           +++AL I     P+      +K         I  +  + + +  +   F   +  +    
Sbjct: 90  IVTALFIALGLDPVVRWLEGRKLPRP-----IGILVSVTVLVSAVAGFFATLIPTI---- 140

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             V    Q     PRW+ D     +   +  +     +  + L +     + +  I    
Sbjct: 141 --VQQVTQVVQEAPRWIQDFIDSDFFRSVDDQFGVRERITQELEKFVNNPDAMGGIFGGV 198

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
             FG    +     + +++   +F     ++ +    L      A  + +S  +   + +
Sbjct: 199 VGFGSTVANGLFGTLIVLVLSLYFLAALPAMKKWGYRLAPRSRRARVEALSEEITGSVGN 258

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
             +G   +A+           + GVP  V L  + A++A IP    +    +   + +  
Sbjct: 259 YVIGQACVALLNATFAFIVMSIVGVPFAVLLAFVVALLAFIPLVGGMIAGVLVTLIALTA 318

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
               A    +     L      + P ++   + +P       ++ G   +G+LG  I   
Sbjct: 319 GWQTALVYAICYFAYLQFEAYFISPRIMQKAVAVPGAVAVISVIAGGSLLGVLGALIAIP 378

Query: 334 LMALIAVIWKESIMAIKENK 353
             A + ++ KE  +  ++  
Sbjct: 379 TAAAVMLLVKEIFIVRQDKH 398


>gi|313905990|ref|ZP_07839344.1| protein of unknown function UPF0118 [Eubacterium cellulosolvens 6]
 gi|313469174|gb|EFR64522.1| protein of unknown function UPF0118 [Eubacterium cellulosolvens 6]
          Length = 454

 Score = 79.1 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 51/337 (15%), Positives = 106/337 (31%), Gaps = 23/337 (6%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEE----------------SSTFLAVIATVSVMCLF 74
             P+L    I +   P+                          S      +A + V+   
Sbjct: 103 LRPLLIGFAIAYLLDPLAGRLEKVLNGVKKKLRKPNAKKPMGSSRGLAVALAWLVVLTAI 162

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           ++ +  +    +    +LVS +   +         L      +  +       S   S  
Sbjct: 163 VL-VASMIVSTISHSVQLVS-LNSLDSLVYSFADTLKSFSKSITGALKQMHIPSAEISSY 220

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                   + G   +                + IF +I   +F  DG  +      +   
Sbjct: 221 TQKLGETISKGFSEMATGMLFSLKNVTGIVSTTIFALIFGIYFMLDGEGLKHYWGHVYHS 280

Query: 195 LFPA----YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L           + +   +V      G  +  +   +V+  A  L GV   V +G++T I
Sbjct: 281 LVSDSVSRRTSDLIKNADRVFSGYIRGQFLDGVFIAVVITIALSLCGVKYAVIIGILTGI 340

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
             ++P  G+ I++T   +  L+  +I       +   +   I    + P L+   I +  
Sbjct: 341 GNLVPYLGSFIAYTTTILVCLVSFDIKRMIIAIIVIFVVQTIDGNVVNPKLLSSSISIHP 400

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           +     L+ G    GLLG+ +     AL+ + +++ I
Sbjct: 401 MLVIASLIIGAAIGGLLGMLLAVPSGALVKIYFEKFI 437


>gi|157144583|ref|YP_001451902.1| hypothetical protein CKO_00303 [Citrobacter koseri ATCC BAA-895]
 gi|157081788|gb|ABV11466.1| hypothetical protein CKO_00303 [Citrobacter koseri ATCC BAA-895]
          Length = 353

 Score = 79.1 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 54/347 (15%), Positives = 113/347 (32%), Gaps = 14/347 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +P+ I   +I+      L+F  G  AP+L A+++ +   WP      +       
Sbjct: 10  RRRFSDPEAIALLVILVAGFGILFFFSGLLAPLLVAIVLAYLLEWP-TVRLEAIGCSRRW 68

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             +++  V V  L ++  + +       +  +     + N+            P  M A 
Sbjct: 69  ATSIVLIVFVGILLLMAFVVMPVAWQQGIYLIRDMPGMLNKLSDYAATLPRRYPALMDAG 128

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +     +    +  L ++ +K +    +           L   + ++ + + +FF  +D
Sbjct: 129 IIDAMAENMRTRMLTLGDSVVKYSLASLV---------GLLTLAVYLVLVPLMVFFLIKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +         +     + + I +   G  +  +  G+     + L G+  
Sbjct: 180 KEQMLNAVRRVLPRNRGLAGQVWME-MNQQITNYIRGKVLEMVVVGVATWLGFLLFGLNY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V+     +IP  GA +    V  + L   G        F    I   +    L P
Sbjct: 239 SLLLAVLVGFSVLIPYIGAFVVTIPVIGVALFQFGLGTEFWSCFAVYLIIQALDGNLLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L    + L  L     +V      G  G+F    L  LI  +    
Sbjct: 299 VLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVHAW 345


>gi|300723562|ref|YP_003712867.1| putative permease [Xenorhabdus nematophila ATCC 19061]
 gi|297630084|emb|CBJ90721.1| putative permease (PerM family) [Xenorhabdus nematophila ATCC
           19061]
          Length = 355

 Score = 79.1 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 120/358 (33%), Gaps = 18/358 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +PQ I+  +I+ +    +YF  G  APVL+A+++ +   WP     + K   S  
Sbjct: 10  RRRFTDPQVIVLSVILLVGFGIIYFFNGILAPVLAAIVLAYLLEWPTVQ--LEKLGCSRA 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               I     M +  + +L +      +   L S           +P  L+         
Sbjct: 68  LSVSIVLTVFMGISSLVILIVAPTVWQQGLNLFS----------DLPNMLNRFNVYAHTL 117

Query: 121 ELWTKHLSHPQSLKILSETFLK--TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                 L     + ++++      +   + + +F+    +  L   + +I + + +FF  
Sbjct: 118 PARYPALVDAGIIDMIADNLRSKISLAGESVFQFSVASLIGLLTLAIYLILVPLMVFFLL 177

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D   +   L  +         K +   + + I +   G     I   +     +   G+
Sbjct: 178 KDKNQMVAALQRVLPRNHGLAGK-LWNEMNQQITNYIRGKVTEMIILTVCTYIVFAFFGL 236

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTL 296
              + L V+  +  +IP    +  T   I   L   G   +   LF+   +   +    L
Sbjct: 237 NYSLLLAVLVGLSVLIPYIGTVIVTIPVIIVALFQWGLGADFWTLFIAYLVVQGLDGNLL 296

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            P L    + L  L     ++      G  G+F    L  LI  +         E ++
Sbjct: 297 VPILFSEAVNLHPLVIILSVIIFGGLWGFWGVFFAIPLATLIKAVIHVWPEDKIEGEK 354


>gi|162455165|ref|YP_001617532.1| hypothetical protein sce6883 [Sorangium cellulosum 'So ce 56']
 gi|161165747|emb|CAN97052.1| membrane protein, putative [Sorangium cellulosum 'So ce 56']
          Length = 485

 Score = 79.1 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 70/204 (34%), Gaps = 1/204 (0%)

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
            +LK N +  + R              ++   ++   +       I +    L       
Sbjct: 213 AYLKENSLAVL-RIGQAIATAISRGIFNLFMTLMLAGYIILTHEKILRFFRELWHPTSRD 271

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
            + +  R + + +     G  +I +  G++    +WL  +     L V+  +M++IP   
Sbjct: 272 SFDRFLRRLDRGLSGVVRGQLLICLVNGVLSAIGFWLFDLKYWPILSVLAGVMSLIPIFG 331

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            I  +  ++ + +  +   A  +  W      +    L P ++G   K+  +     L+ 
Sbjct: 332 SILSSIPAVLIGLTQSFGTAVGVLAWIVGIHQLEANFLNPKIIGDAAKIHPVLVVLALLV 391

Query: 319 GVRTMGLLGLFIGPVLMALIAVIW 342
           G     + G       ++L   I+
Sbjct: 392 GEHFFQITGALFAVPCLSLAQTIF 415


>gi|163853611|ref|YP_001641654.1| hypothetical protein Mext_4214 [Methylobacterium extorquens PA1]
 gi|163665216|gb|ABY32583.1| protein of unknown function UPF0118 [Methylobacterium extorquens
           PA1]
          Length = 652

 Score = 79.1 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 44/368 (11%), Positives = 107/368 (29%), Gaps = 29/368 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R+ +     +   +++  +  +LYF +    PV  A+++ F   P   +    +     
Sbjct: 11  LRQALPVVTTLASMLLVVTLASALYFGRDILVPVALAILLSFVLVPAVRALRRVRVPRVA 70

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM-WA 119
            + ++  ++        L  +      E  +L + +   +         L          
Sbjct: 71  AVLLVVVLAFGL-----LGAIGSLIAREAAQLATDLPRYSLTLRDKITALRAATAERGSL 125

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDF---------------------IPRFASRFGM 158
           S+ ++      + +    +        +                      +         
Sbjct: 126 SDTFSGFFDMAEEIGKELQPPAAKTESETNAPLGTAERPMQVEIHAPRSGLLTTLGSVAG 185

Query: 159 IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
             L    ++  +++   F       +  +   L                   +   F+  
Sbjct: 186 GVLHPLATLGLILLFTIFILLQREDLRNRAIRLAGSSDLRRTTAAIDDATSRLSRFFVAQ 245

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIF 276
            I+ +  GLV+G   W  GVPS +  GVI  I   +P    +      ++I + +     
Sbjct: 246 LILNVAFGLVIGVGLWFIGVPSPILFGVIAGISRFVPYVGAVLSAALPLAIAVAVDPGWS 305

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            A  + +   +   I    + P L G    +  +             G +GL +   L  
Sbjct: 306 MAIQVAILFVVIEPIAGHVVEPLLYGHSTGISPIAVILAATIWTFLWGPIGLLLATPLTV 365

Query: 337 LIAVIWKE 344
            + V+ + 
Sbjct: 366 CLVVLGRH 373


>gi|269957420|ref|YP_003327209.1| hypothetical protein Xcel_2637 [Xylanimonas cellulosilytica DSM
           15894]
 gi|269306101|gb|ACZ31651.1| protein of unknown function UPF0118 [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 421

 Score = 79.1 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 53/332 (15%), Positives = 109/332 (32%), Gaps = 15/332 (4%)

Query: 14  WMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +I   +   L+    LK    PV  AL++     P+      +          ++ V +
Sbjct: 28  LLIGTAVAAVLWVMGQLKTIIVPVAVALLLSVLLRPVRDGLERRARFPRGLATAVSVVGL 87

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +    +       +    EL  + V        V  WL++ P G+ + ++        
Sbjct: 88  VVVVGALISLAGQQIVAGFAELADQAVAGFNE---VRNWLAEGPLGIDSGQITEYWDQFA 144

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            S           +G   +   A           +  +  +  L FF  DG +I   L +
Sbjct: 145 DSFT--------GDGASGLLSGALGAATTVGHLLVGALIALFCLIFFLVDGRAIWTWLVN 196

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L          +  R     + +      ++A+ +   +G           + LGV+  I
Sbjct: 197 LLPVNARERMHQAGRRGVVTLSAYVRTQILVALVDAAGIGIGAAFFVPKLALPLGVLVFI 256

Query: 251 MAMIPGGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            + +P    I   A++ + +L+      A  +         I    L+PFL+G  + L  
Sbjct: 257 GSFVPIVGAIVTGAIACVVVLVSQGWVAALIMLAIVLAVQQIEGHVLQPFLMGHAVSLHP 316

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +     +  G    G++G      L A++  +
Sbjct: 317 VAVVLVVAAGSLAAGIIGALFAVPLAAVLNTV 348


>gi|148273430|ref|YP_001222991.1| AI-E2 family membrane protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147831360|emb|CAN02316.1| conserved membrane protein, AI-E2 family [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 411

 Score = 79.1 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 43/335 (12%), Positives = 119/335 (35%), Gaps = 17/335 (5%)

Query: 14  WMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +I+ ++ V  +    L+    P+  A+++     PI +               I+ + V
Sbjct: 55  LLILGVLGVVAWLVIQLEYVVIPLFLAIVLAALLVPISNWMQRHHVP-KWLAVAISEIGV 113

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +      +  +    + +   L ++ +        +  +L+D P  +   +L   +    
Sbjct: 114 IVAVAALVYLVTTQIIGQYDSLRAQTLTRY---ADLRGFLTDGPLQLSEQQLNDAYAQAV 170

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +++  +   L           A             ++ ++ +  F   DG  + + +  
Sbjct: 171 DAVQRDAGALLSG---------ALSVTSSLGHVLTGVLLVLFSTLFILIDGAGMWRWVVR 221

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L   L         +     +++      ++A+ + + +     + GVP  + +GV+  +
Sbjct: 222 LFPRLARPAVDGAGKAGWSTLQNFVKVQVLVALIDAVGIAGGAAIIGVPLAIPIGVLVFL 281

Query: 251 MAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            + IP    +    +++++ L+   +  A  +     +   +    L+P ++G  +K+  
Sbjct: 282 GSFIPIVGAVVTGTLAVFVALVYNGLTQALIMVGIVLLVQQVEGHVLQPLIMGSVVKVHP 341

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L     +  G    G+ G F    L+A +  + K 
Sbjct: 342 LAVVLSVAAGGMVAGIAGTFFAVPLVATLNSMVKH 376


>gi|220935418|ref|YP_002514317.1| permease [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996728|gb|ACL73330.1| permease [Thioalkalivibrio sp. HL-EbGR7]
          Length = 368

 Score = 79.1 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 56/331 (16%), Positives = 114/331 (34%), Gaps = 9/331 (2%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +     Q +   +      + +Y+L+    P L A +  +   P+        E      
Sbjct: 4   QPGAASQRLTLLLFFAAAGLLVYWLRPILTPFLLAALFAYLGNPLVLRLQR--EGRRWKW 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS--DIPGGMWAS 120
            +  T +V+ +F++  L L    +  +  L  ++    +       W     +P      
Sbjct: 62  RLPRTAAVILVFLLLFLGLLLAVLTLVPVLQRELARFLEWLPQWLAWFRAEALPWLENRF 121

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFAS--RFGMIFLDYCLSIIFMIIALFFFY 178
            L  +      +L  L     +  G   +    S  R G +   + L+++ + +  F+  
Sbjct: 122 GLPLEG-PEMGTLSGLLSEHWQQAGEWALGALGSMGRSGGLVFAWLLNLVLVPVVTFYLL 180

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           RD   +   L  L          +I R    V+ +   G  ++ I          W AG+
Sbjct: 181 RDWERLVAALHGLLPRSIEPRVVRIVRESDAVLATFIRGQLLVMISLAAFYAVGLWFAGL 240

Query: 239 PSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
              +A+GV   +++ +P  G        V+  LL   + +    +     +   +    L
Sbjct: 241 DLAIAVGVTAGLVSFVPYLGVIVGVGLGVAAALLQSTDPWLLIWVLAVFGVGQLLESLVL 300

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            P+LVG  I L  +   F ++ G +  G  G
Sbjct: 301 TPWLVGDRIGLHPVAVIFAVLAGGQLFGFFG 331


>gi|225180849|ref|ZP_03734297.1| protein of unknown function UPF0118 [Dethiobacter alkaliphilus AHT
           1]
 gi|225168330|gb|EEG77133.1| protein of unknown function UPF0118 [Dethiobacter alkaliphilus AHT
           1]
          Length = 350

 Score = 79.1 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 51/347 (14%), Positives = 124/347 (35%), Gaps = 15/347 (4%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           P  +    ++  I+  L+F+         ++ + +I ++  P+ +    K    S  +  
Sbjct: 12  PLIVRTLAVILTIIAVLWFVHKISWVIGILVVSTMIVYSISPLSNYLTRKGVPHSVSVLS 71

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  + +   F+     L      EM+ L   +  A  +   +P  L  I   M +  +  
Sbjct: 72  VYLLLLFSAFLF-FYLLIPTLTNEMRALARYL--ATDYSYLLPEILLQIDQLMASENIHQ 128

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                 Q+L  + +  + T  +                    ++ ++  +++  RD   +
Sbjct: 129 ALQDVAQNLPNMLQQAVFTMTL---------VTGSIFSGLTEVLIVLFLVYYMLRDLSHV 179

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + +  L    +      + +I+   + +   G  +     G++ G A  + G+P  + L
Sbjct: 180 KRGIVRLFPPAWRKESTHVLQIIDLKVGAYLRGNLLRCTAVGIITGIALAIVGMPFALML 239

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           G++  I+ +I    P      ++ L +  N  +   + +       +    L P L+G  
Sbjct: 240 GILAGILNIIVYIGPYLAGIPAVLLALTPNTPHPILIVVLYVTVQAVDAFLLTPNLLGKA 299

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           + L        L+ G   +G++G  +   + A I VI     +   +
Sbjct: 300 VDLRPFTVIISLLIGGTLLGVIGFLLAIPVAATIKVIIYHYYLKEDQ 346


>gi|149026354|ref|ZP_01836509.1| hypothetical protein CGSSp23BS72_01657 [Streptococcus pneumoniae
           SP23-BS72]
 gi|147929316|gb|EDK80315.1| hypothetical protein CGSSp23BS72_01657 [Streptococcus pneumoniae
           SP23-BS72]
          Length = 369

 Score = 79.1 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 41/316 (12%), Positives = 108/316 (34%), Gaps = 6/316 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L     P L    + + + PI +      + +     +I   +++   ++ +++L    
Sbjct: 37  VLNTIMIPFLLGGFLYYLTNPIVTFLNKVCKLNRLLGILITLCTLVWGMVIGVVYLLPIL 96

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  L   ++ +      +   + D+        L  +      +L  +    +  N 
Sbjct: 97  INQLSSL---IISSQTIYSRIQDLIIDLSNYPALQNLDVEATIQQLNLSYVD---ILQNI 150

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           ++ +           +   L +I   + L +F  DG      L+         +   + +
Sbjct: 151 LNSVSNSVGSVLSALISTVLILIMTPVFLVYFLLDGHKFLPMLERTILKRDRLHIAGLLK 210

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   I     G++I AI  G +    Y + G+   +   + + +  +IP   P      
Sbjct: 211 NLNATIARYISGVSIDAIIIGCLAYIGYSIIGLKYALVFAIFSGVANLIPYVGPSIGLIP 270

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            I   I  +        ++  +   +    L P +VG  +K+  +     L+      G+
Sbjct: 271 MIIANIFTDPHRLLIAVIYMLVVQQVDGNILYPRIVGSVMKVHPITILVLLLLSSNIYGV 330

Query: 326 LGLFIGPVLMALIAVI 341
           +G+ +     +++  I
Sbjct: 331 VGMIVAVPTYSILKEI 346


>gi|294795119|ref|ZP_06760254.1| putative membrane protein [Veillonella sp. 3_1_44]
 gi|294454481|gb|EFG22855.1| putative membrane protein [Veillonella sp. 3_1_44]
          Length = 373

 Score = 79.1 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 112/335 (33%), Gaps = 11/335 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEES---------STFLAVIATVSVMCLFIVPLLFL 81
           F P++    I F    +   +                   L+++ +   + + +  +  +
Sbjct: 41  FVPLIVGACIAFVLDILVVRYERWLWPKCDSGWKYKIRRPLSLLLSFVTISVIVYFIARM 100

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               ++    ++  V  + Q       W+  I   +  +   T   +             
Sbjct: 101 ALPQLIHSMSII--VAASPQLYTDFQTWMQHITETIPMASNQTIIDALSGENIAKYTREW 158

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            T G  +I           L+  L +IF +  L    R      + L +     +     
Sbjct: 159 GTKGGTYIVNAMGTVLSWTLNIGLGLIFAVYMLLDKERLMLQGKRILKAYASDEWVNRVS 218

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            ++R+  +   + F+G  I A+  G+++G   WL  +     +  +  +  +IP      
Sbjct: 219 YVTRVAVQTFSNFFVGQFIDALVLGVMVGITLWLFNIEYATTIACVIGLTGLIPLLGIYV 278

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
              +   +L+     +A    +   +   I    + P +VG  + LP L  F  ++ G  
Sbjct: 279 GGIIGAVMLLTVGPMDALIYVIILEVLHQIESNFIYPKIVGNSVGLPGLWVFAAVIVGGS 338

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            MG+ G+ IG  L+A    +    +     + E +
Sbjct: 339 LMGVTGMLIGVPLVATCYKLIMTDVDGRLASNEGL 373


>gi|254563547|ref|YP_003070642.1| membrane transport protein [Methylobacterium extorquens DM4]
 gi|254270825|emb|CAX26830.1| putative membrane transport protein [Methylobacterium extorquens
           DM4]
          Length = 652

 Score = 79.1 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 44/368 (11%), Positives = 107/368 (29%), Gaps = 29/368 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R+ +     +   +++  +  +LYF +    PV  A+++ F   P   +    +     
Sbjct: 11  LRQALPVVTTLASMLLVVTLAGALYFGRDILVPVALAILLSFVLVPAVRALRRVRVPRVA 70

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM-WA 119
            + ++  ++        L  +      E  +L + +   +         L          
Sbjct: 71  AVLLVVVLAFGL-----LGAIGSLIAREAAQLATDLPRYSLTLRDKITALRAATAERGSL 125

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDF---------------------IPRFASRFGM 158
           S+ ++      + +    +        +                      +         
Sbjct: 126 SDTFSGFFDMAEEIGKELQPPAAKTESETNAPLGTAERPMQVEIHAPRTGLLTTLGSVAG 185

Query: 159 IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
             L    ++  +++   F       +  +   L                   +   F+  
Sbjct: 186 GVLHPLATLGLILLFTIFILLQREDLRNRAIRLAGSSDLRRTTAAIDDATSRLSRFFVAQ 245

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIF 276
            I+ +  GLV+G   W  GVPS +  GVI  I   +P    +      ++I + +     
Sbjct: 246 LILNVAFGLVIGVGLWFIGVPSPILFGVIAGISRFVPYVGAVLSAALPLAIAVAVDPGWS 305

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            A  + +   +   I    + P L G    +  +             G +GL +   L  
Sbjct: 306 MAIQVAILFVVIEPIAGHVVEPLLYGHSTGISPIAVILAATIWTFLWGPIGLLLATPLTV 365

Query: 337 LIAVIWKE 344
            + V+ + 
Sbjct: 366 CLVVLGRH 373


>gi|158336770|ref|YP_001517944.1| hypothetical protein AM1_3638 [Acaryochloris marina MBIC11017]
 gi|158307011|gb|ABW28628.1| conserved membrane protein [Acaryochloris marina MBIC11017]
          Length = 351

 Score = 79.1 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 56/358 (15%), Positives = 124/358 (34%), Gaps = 25/358 (6%)

Query: 6   LNPQGIMRWMIMFIILVS----LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           L    ++R++++F    +      + +G     + A I+ F                   
Sbjct: 13  LTNSVLIRFLLLFASSWATLQVFAYFQGILLIFIFAAILAFLLNYPTQWLKRFLPH--GV 70

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A +  +  + L    L+ + +  + + +ELV+ V         + R             
Sbjct: 71  AATVVFMVGLLLLFGLLITILFAVLSQGQELVNSVTEFLNAMEQLSRQ------------ 118

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFG--MIFLDYCLSIIFMIIALFFFYR 179
              + +   + ++I             I    S  G     ++  + +I + +  FF   
Sbjct: 119 --AEQMLAARDVQIDFGAIEAKFRDQVIESIGSSVGVIQGIVNNLIDLILVAVVSFFMLL 176

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  I + L         A   + +  + +     F G  ++A+   +     +    VP
Sbjct: 177 DGGRIWKWLLRGLPK---ASRTRFTLAMKRNFLGFFWGRFLLALFFAVSSFFVFLSLSVP 233

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             + L V+  I  MIPG        +   +L+   ++ A  + +   +   I +  L P 
Sbjct: 234 VPLILAVVAGIFDMIPGIGATIGIGLISLILLPQGLWRAMQVLIACIVLQQIEENILMPR 293

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           ++   +++  +  FF L+ G R  GL+GLF+   +  ++  +             K+S
Sbjct: 294 VMQNSLQMNPVVLFFALLIGSRLAGLVGLFLSIPIAGVLLSLMDNDTEEDDNEFSKVS 351


>gi|254391817|ref|ZP_05007012.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|326443835|ref|ZP_08218569.1| hypothetical protein SclaA2_22348 [Streptomyces clavuligerus ATCC
           27064]
 gi|197705499|gb|EDY51311.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 397

 Score = 79.1 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 43/320 (13%), Positives = 103/320 (32%), Gaps = 14/320 (4%)

Query: 37  ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV 96
           A  I     P  +   ++          +    ++   +  ++ L      ++  +V   
Sbjct: 47  AFFIALAIEPAVARMAAR-GVRRGLATFLVFFGLLSAAVGFVVMLGSMLADQIVTMVEDF 105

Query: 97  VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
               Q+   V  W++      + +EL    +          +++++ +    +   A+  
Sbjct: 106 P---QYLDSVISWINQ----TFETELSRVEVQDSVLRSDWLQSYVEDSATGVLDVSATVL 158

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
           G +F    + +       F+F  DG  + + + S+      A   +   I          
Sbjct: 159 GGLFRLLTIFLF-----SFYFAADGPRLRRTICSVLPPAKQAEVLRAWEIAVDKTGGYIY 213

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNI 275
              ++A+  G        + GVP   AL V   +++  IP        A+ + +    N 
Sbjct: 214 SRGLMALISGGAHYVLLEVLGVPYAPALAVWVGLVSQFIPTIGTYLAGALPMLIAFTVNP 273

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
           + A  +  +  +     +  L+P L    + +     F  ++ G   MG +G  I    +
Sbjct: 274 WYAVWVLGFVVVYQQFENYVLQPKLTARTVDIHPAVAFGSVIAGTALMGAVGALIAIPAV 333

Query: 336 ALIAVIWKESIMAIKENKEK 355
           A +       +       + 
Sbjct: 334 ATLQAFLGAYVRRYDVTDDP 353


>gi|220931418|ref|YP_002508326.1| predicted permease [Halothermothrix orenii H 168]
 gi|219992728|gb|ACL69331.1| predicted permease [Halothermothrix orenii H 168]
          Length = 351

 Score = 79.1 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 50/339 (14%), Positives = 122/339 (35%), Gaps = 15/339 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +++  I+  +  +K    P +    + +   P+ +    +               +  L
Sbjct: 15  LLVLGGIIYFILLIKKVLLPFVFGTFLAYLFNPLITFLRKRNISR-----------ITAL 63

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           +I+ L+ L  +  + +  L   +    +  + +P++++ +   +       + +  P+ +
Sbjct: 64  YILILVVLILFISISIFILPIFIRELEELTVTLPKYVNSLEKYVEYVNREYRRIHLPEVI 123

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLD---YCLSIIFMIIALFFFYRDGFSISQQLDS 190
           K + +  L     +FI  F        ++   Y +S+    I  ++  +D   I     +
Sbjct: 124 KEVIDQAL-AKLENFILNFIENLTTSVINSLTYIVSLFISPIITYYILKDYEEIQSSFLN 182

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +    +     K  R + K+      G   ++I  G+       L  V  ++ LG++  I
Sbjct: 183 IVPKKYRKPVLKSGREISKIFVGFLRGQIWVSIIVGVFSTLGLMLFKVKFYLLLGILAGI 242

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             MIP   P+     ++ +    +   A  + +  ++   +    + P +    + L  L
Sbjct: 243 TNMIPYFGPVIGAIPAVMIAFLSSPVKAFGVIILFSLIQQVESSIIGPKIFSNRVGLHPL 302

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
              F L+ G       GL     +   + VI+K  I  I
Sbjct: 303 TIIFVLLAGADIFDGWGLIFAVPVAGSLKVIFKIFIEQI 341


>gi|308174808|ref|YP_003921513.1| integral inner membrane protein [Bacillus amyloliquefaciens DSM 7]
 gi|307607672|emb|CBI44043.1| putative integral inner membrane protein [Bacillus
           amyloliquefaciens DSM 7]
 gi|328554762|gb|AEB25254.1| integral inner membrane protein [Bacillus amyloliquefaciens TA208]
 gi|328913116|gb|AEB64712.1| putative integral inner membrane protein [Bacillus
           amyloliquefaciens LL3]
          Length = 386

 Score = 79.1 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 49/333 (14%), Positives = 116/333 (34%), Gaps = 5/333 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           FI    +  LK    PV+   I+ +   PI    + K      +  ++  + ++ L  + 
Sbjct: 42  FIFTPIIVLLKTIALPVILTGIVYYLLNPIVD-ILEKLRVKRVYSILLLYLIIIGLISIT 100

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           ++ +  +   ++  L+  +         V      + G  + ++       +   L    
Sbjct: 101 IVSIIPFLKEQIMSLIDNLPKYVDI---VEDQTKSLIGSDFVNQAQKTMNINISDLANKV 157

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
                T          +  G +  +  +SI+ +   LF+  +DG  +   +         
Sbjct: 158 SAQAATIANSTFTGVGNFIGALT-EVIISIVTVPFILFYLLKDGKKLPFYILKFVPTRLK 216

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   +   + S   G  I++   G +L   Y + G+     L VI A  +++P  
Sbjct: 217 EQTYTMLSEMNHRLSSYIRGQIIVSFCIGFLLFIGYLIIGLDYASLLAVIAACTSVVPYL 276

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P      +I + +  +      L +   +   +  K + P ++G  + +  +   F L+
Sbjct: 277 GPTIAITPAIIIALVTSPLMLLKLAIVWTVVQLVEGKLISPQIMGKNLHIHPITIIFVLL 336

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
              +  G++G+ +     A+I V+        K
Sbjct: 337 TAGKLFGVVGIILAIPGYAVIKVVTTHLFDWFK 369


>gi|119486999|ref|ZP_01620871.1| hypothetical protein L8106_18821 [Lyngbya sp. PCC 8106]
 gi|119455928|gb|EAW37062.1| hypothetical protein L8106_18821 [Lyngbya sp. PCC 8106]
          Length = 376

 Score = 79.1 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 124/336 (36%), Gaps = 11/336 (3%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + L+     ++ ++++  +  P+     +++        ++  ++++       L +   
Sbjct: 35  WQLQSLIVLLMISVVLAASIVPLVDWAEAQRIPR-WLAVILVYLTLIAGLTGFGLVIGPR 93

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
              ++  LV ++ L ++  + +   L+         E     +      + ++   ++++
Sbjct: 94  VFDQISLLVRQLPLFSERIVDIASALAS-----RLGEDTPALIEDLIDTQSVTNWIIRSS 148

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               +  +        +    S+I  +    +   D  ++ + L  L  + +        
Sbjct: 149 QQLLLRSY--SITRGIVGGVFSLIIALFVSGYMVADSNTLIKSLVQLFPYPWNERLNAQV 206

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV-PSHVALGVITAIMAMIPGGAPIS-F 262
             V + +     G  +++   G+         G+    + LG I  +  +IP   PI   
Sbjct: 207 SQVSRRMGGYIRGRLLVSGILGVATTMGLGFLGLREFALGLGAIAGVTNLIPFLGPILGA 266

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
               I  L KG       L L+  I   +    L P LVG  + +  L     ++GGV+ 
Sbjct: 267 IPALIVALAKGGFLFFWVLLLY-VIAQNVETYVLDPLLVGTSVGVHPLFQLLSVLGGVQV 325

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +G+LG  I P   A +A + +   +  KE +E++  
Sbjct: 326 LGILGALIVPPWFAGVAALVENLYLKPKEEQEQLKK 361


>gi|170727235|ref|YP_001761261.1| hypothetical protein Swoo_2891 [Shewanella woodyi ATCC 51908]
 gi|169812582|gb|ACA87166.1| protein of unknown function UPF0118 [Shewanella woodyi ATCC 51908]
          Length = 394

 Score = 79.1 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 45/335 (13%), Positives = 108/335 (32%), Gaps = 23/335 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G      + +IL  +        P + +  I     P+       +   +  LAV+  +
Sbjct: 12  KGFAIMAFIVVILAGIKAASPIVVPFVLSAFIAVICNPVIGWLTKLRVPRA--LAVLFLM 69

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +  + L  +    + E    + +                           W     
Sbjct: 70  VFIVMMGLWLAQVVGSSINEFSSQLPQYRDQLVDQFG-----------------WVIEKL 112

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              ++ I  E  L            +           ++  +I+ + F   +  ++ ++L
Sbjct: 113 RTFNIIITKEQVLAYFDPGVALSMTTNMLSGVGSVMANLFLIILTVVFMLFESETLPKKL 172

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
               +   P    +      + +    +  T+++IG G+++G    + GV   +  GV+ 
Sbjct: 173 HFALDD--PDMRMQQIDKFLQSVNQYMVIKTLVSIGTGVIVGVGLAIIGVDYALLWGVVA 230

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP  G+ I+     +   I+     A    L       ++   + P  +G  + L
Sbjct: 231 FLFNYIPNIGSIIAAIPAVLLAFIQLGPAAAGATGLLYLGTNTVMGNVIEPKYMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
             L  F  L+     +G +G+ +  P+ M +   +
Sbjct: 291 STLVVFLSLIFWGWLLGSVGMLLSVPLTMIVKIAL 325


>gi|322370756|ref|ZP_08045312.1| permease [Haladaptatus paucihalophilus DX253]
 gi|320549714|gb|EFW91372.1| permease [Haladaptatus paucihalophilus DX253]
          Length = 399

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 57/352 (16%), Positives = 124/352 (35%), Gaps = 31/352 (8%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             ++ + LV+ +    F   V+  +   + + PIY       +      A+      + +
Sbjct: 19  VFVLLLALVAGFVTYSFVGLVVLGVFGYYATRPIYRRLRVITDSDGVIAALT-----LLV 73

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             +P++ L +Y   ++ +   +      +   V  +L  +P       L    +  PQ  
Sbjct: 74  VFLPIVLLTFYAGFQLFQQAQQAFGGTANSTLVTNYLGALPKAQQERVL--AAMQQPQQF 131

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
               +  ++T     +   ++  G I L     I   +   +FF ++   +S  L  L  
Sbjct: 132 VSNPQKTVQTVLHSGLRVTSAVIGGIML-----IALSVTLAYFFLKNDDQLSSGLTQLFG 186

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL--------AGVPSHVALG 245
                     +  V + + S F G  +  +   L+  +AYW           VP    L 
Sbjct: 187 G-KDTTAYAYAVAVDEDLESVFFGNLLFIVVMSLIAAAAYWGTNVVAPGDLHVPMVFVLA 245

Query: 246 VITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNA-------TCLFLWGAIELFIVDKTLR 297
            +T + ++IP     + +  V  YL I+               L ++  +   +    L+
Sbjct: 246 FLTGVASLIPIVVGKLVYLPVVGYLGIQAVNAGGDYLVFVGGVLVVYFLLLDTLPQTFLQ 305

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           P++ G  + +  +   F  + G    G  G F+ P+L  L+    +  +  +
Sbjct: 306 PYITGRQLDM--VMMMFAYLLGPILFGWYGFFLLPILFILMLEAVRIVLPEL 355


>gi|75760499|ref|ZP_00740536.1| Hypothetical membrane spanning protein [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74491999|gb|EAO55178.1| Hypothetical membrane spanning protein [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 215

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 73/191 (38%)

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
           L +  + + +F+ ++DG +   +  SL    +     +I +   + + +   G  ++ I 
Sbjct: 23  LVVFTVPVIVFYMFKDGHAFPGKAVSLLPESYREEGLRIIKETNETLSAYIQGQALVCIF 82

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLW 284
            G      Y +  +P    LG+I A   +IP   P    A ++ + +  +   A  + + 
Sbjct: 83  VGAFTFIGYLIIDLPYAFVLGIIAAFTNIIPNLGPFIGAAPAVIVGLFVSPMQALYVIII 142

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             I        + P ++   + +  L     ++G     G++G+ +   + A+   +   
Sbjct: 143 VTIVQQFESNIISPRIMSSKLNIHPLTIIILILGVGNFAGIIGMILAVPVYAVTKTVVSN 202

Query: 345 SIMAIKENKEK 355
            +   K  +  
Sbjct: 203 LVRLFKTKRSN 213


>gi|168204285|ref|ZP_02630290.1| putative membrane protein [Clostridium perfringens E str. JGS1987]
 gi|169342966|ref|ZP_02863994.1| putative membrane protein [Clostridium perfringens C str. JGS1495]
 gi|169298875|gb|EDS80949.1| putative membrane protein [Clostridium perfringens C str. JGS1495]
 gi|170664060|gb|EDT16743.1| putative membrane protein [Clostridium perfringens E str. JGS1987]
          Length = 377

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/333 (13%), Positives = 114/333 (34%), Gaps = 8/333 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-------STFLAVIATVSVMC 72
           I+  LY   G   P +  + I F               S        +F   +  +  + 
Sbjct: 31  IMNFLYKFLGILKPFIWGIAIAFILNIPVKLIEKNLGNSKFFKGMKRSFSITLTFLFFIL 90

Query: 73  LFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              + +LF+    +  +  L++ +    +Q    +     +        +     L +  
Sbjct: 91  AITLFILFVIPQLLSSISTLMNSIPEYLSQFEKFLEVNAINNSQSQVMMQNIINELLNMW 150

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              +   + +    + ++  F        +++ LS+I  I  L         +   + + 
Sbjct: 151 KEILKVTSQIVGTSLGYLLDFTLGITYGVINFFLSLILAIYMLASKEILISQLKLIIYAF 210

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                     ++ ++  ++     LG    A+  G++      +  +P  + + V+  + 
Sbjct: 211 VSKNKADRIIELGKMCNEMFSKFILGQCTEALVIGVLCFIGMIILKMPYALLISVVIGVT 270

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           A+IP       T  S ++++  +   A    ++  +   +    + P +VG  I L  L 
Sbjct: 271 ALIPVFGAFLGTIPSAFIILIIDPIKALWFIIFIIVLQQLEGNLIYPRVVGSSIGLSALW 330

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             F ++ G    G++G+ IG  +  ++  I K 
Sbjct: 331 VMFAMIVGGSLFGIIGMLIGIPIFGVVFKILKR 363


>gi|222480504|ref|YP_002566741.1| hypothetical protein Hlac_2094 [Halorubrum lacusprofundi ATCC
           49239]
 gi|222453406|gb|ACM57671.1| conserved hypothetical protein [Halorubrum lacusprofundi ATCC
           49239]
          Length = 348

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 59/344 (17%), Positives = 112/344 (32%), Gaps = 43/344 (12%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + I  V  + L  F   ++  + + + + PIY        E     A +  ++V    ++
Sbjct: 19  VLITAVVAFVLYSFVGAIVVGIFLYYATRPIYRWIDQWT-EHPDLSATVTLLTVGLPILL 77

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L +  + G+ E+ +  +   L                      E     L     L   
Sbjct: 78  ILAYATFVGIREIDQFFAIANL----------------------EQLRTVLEPYVDLVSG 115

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           SE       +      A  F      + L +       F+  RD + I+Q      EH  
Sbjct: 116 SEEQGLFGILRDNVSRARGFASSATVWLLRLFVSFTLAFYLLRDDYKIAQWFRRSFEH-- 173

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA--------GVPSHVALGVIT 248
                     V   + + + G  I     GL+  S Y++         GV     LG++T
Sbjct: 174 QPAAVTFVEQVDADLTTIYTGNLITIGASGLLAVSTYYVLDIIAPAGTGVQFPFLLGLLT 233

Query: 249 AIMAMIPG-GAPISFTAVSIYLLIK-------GNIFNATCLFLWGAIELFIVDKTLRPFL 300
            +  +IP  G  + +   + YL+ +          F      +   +   I D  +R ++
Sbjct: 234 GVATLIPAIGMKLIYYPYTGYLVWQVVSKGEGSLWFPVVFFLVTVVVVDVIPDFFIRSYV 293

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             G  +L         V GV   G  G+F  P+++ +     ++
Sbjct: 294 SKG--ELNMGLLLLTYVLGVVAFGWYGVFFAPIVLVVFIHFVRD 335


>gi|313672439|ref|YP_004050550.1| hypothetical protein Calni_0474 [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939195|gb|ADR18387.1| protein of unknown function UPF0118 [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 356

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/333 (16%), Positives = 120/333 (36%), Gaps = 10/333 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           ++F++++    L+        A +I +   P+      K +    F  ++       + +
Sbjct: 17  LLFLLVIFYVKLQSVINMFAIAFLISYLLIPLVHFVEDKLKIGRVFSVILIFSVFSGMVV 76

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + L+ +      E+  L   +       I     ++DI          T       S   
Sbjct: 77  LFLIIVIPLLYAEIFNLFKNLSSYAVIFI---EKINDIFKKYNYQLDLTALKQLMLSKLN 133

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              + L    ++ +    +          L    + I +F+F +D   I ++  S  +  
Sbjct: 134 EHGSELFKGSLNILTSIITSIST-----LLGFFVIPILVFYFLKDFEFIFKKGVSFIKTR 188

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                   +     +++  F G  ++    G++ G    L G+    A+G I+ +++ IP
Sbjct: 189 LRIDIDYYNYQFNSILKGYFRGQLMVCFILGILYGVVDLLVGIKGGFAIGFISGLLSFIP 248

Query: 256 GGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
               I+   +++ I  L  G+I +   + +   +        L P LVG  + L  +   
Sbjct: 249 YLGFITGFVSSIIISYLQFGDILHPLLVVVGFMLVQSFESYFLTPKLVGEHLGLHPIAVI 308

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           F L  G   MG+ G+ +   L A I ++  + +
Sbjct: 309 FALFAGGYLMGIGGMILSIPLAAFIKIVINKFL 341


>gi|258654182|ref|YP_003203338.1| hypothetical protein Namu_4059 [Nakamurella multipartita DSM 44233]
 gi|258557407|gb|ACV80349.1| protein of unknown function UPF0118 [Nakamurella multipartita DSM
           44233]
          Length = 409

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/314 (16%), Positives = 110/314 (35%), Gaps = 21/314 (6%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            ++   ++ +     P+  AL++  T  P+    I +   +  +LA +  V  +   I  
Sbjct: 64  VVVAAGIHAVPDLIGPIFLALVLTITVDPLRGMMIRR--GAPRWLATLVVVIGVYAIIFG 121

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           L+     G+ +   L+ +     Q  +   +                  L+     +   
Sbjct: 122 LVIAAAVGVAQFVGLMPQYADQLQTELTGVK----------------SWLAGMGVTQEQI 165

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
           ++ L +     I  + +      ++   S+ F+I  L F   DG   S+++        P
Sbjct: 166 QSMLSSVDKSSILSYIASLLSSVMNVFTSLFFIITLLIFLAVDGSVFSERMVKHRPGREP 225

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-G 256
           A             R  F   TI      ++ G+A  + G+P+     ++  +   IP  
Sbjct: 226 AL--NALGQFAAGTRKYFAVATIFGGIVAVLDGAALVIMGIPAAGLWALLAFVTNYIPNI 283

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           G  I     ++  L+ G       + +   +  FI+   L+P  VG  + L    +F  L
Sbjct: 284 GFIIGLIPPALLGLLVGGPSLMIWVIVVYCVLNFIIQSVLQPKFVGDAVGLTTTMSFLSL 343

Query: 317 VGGVRTMGLLGLFI 330
           +     +G LG  +
Sbjct: 344 ILWAFLLGPLGAIL 357


>gi|322376424|ref|ZP_08050917.1| membrane protein [Streptococcus sp. M334]
 gi|321282231|gb|EFX59238.1| membrane protein [Streptococcus sp. M334]
          Length = 369

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/311 (13%), Positives = 102/311 (32%), Gaps = 6/311 (1%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L    + + + P  S      + +     ++   +++   ++ +++L    + ++ 
Sbjct: 42  MIPFLLGSFLYYLTNPFVSFLQKYFKINRIIGILLTLCALVWGLVIGVVYLLPILVNQLT 101

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L++           +   LS  P            +        LS   +  N ++ + 
Sbjct: 102 SLIATSQTIYSRLQDLIVDLSTYPAFQNLD------IQANIQQLNLSYVDILQNILNSVT 155

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                         L II   + L +F  DG      L+         +   + + +   
Sbjct: 156 NSVGSILSALFSTVLIIIMTPVFLVYFLLDGHKFLPMLERTVLKRDKLHIAGLLKNLNAT 215

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           I     G+ I AI  G +    Y + G+   +   + + +  +IP   P       I   
Sbjct: 216 IARYISGVAIDAIIIGCLTFIGYSVIGLKYALVFAIFSGLANLIPYVGPSIGLIPMIIAN 275

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +  +        ++  I   +    L P +VGG +K+  +     L+      G++G+ +
Sbjct: 276 VFTDPHRMLIAVVYMLIIQQVDGNILYPRIVGGVMKVHPITILVLLLLSSNIYGVIGMIV 335

Query: 331 GPVLMALIAVI 341
                +++  I
Sbjct: 336 AVPTYSILKEI 346


>gi|317499359|ref|ZP_07957627.1| ATP synthase F0 [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893328|gb|EFV15542.1| ATP synthase F0 [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 375

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/327 (13%), Positives = 107/327 (32%), Gaps = 6/327 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL-FLFYY 84
            +  F      A II             K ++    L++I  +  +   I+ +   +   
Sbjct: 41  VVFPFILGSCVAFIINVPMSFFERKLFYKLKKGKRSLSLIMAIVSIVGVILLVSRLIIPE 100

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            +  + +L + +    +    +              +   +       +     TFL+  
Sbjct: 101 LVDTIFKLSNNIPEYVKEIQALLE--KTSMNKPMVHKYVNQITFDWDKISGELITFLQDG 158

Query: 145 GIDFIPRFASRFG---MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
               +    S         + + L  +F + AL    +    + + L +        Y  
Sbjct: 159 ATSMLNSTVSAITDVVQFIVSFALGFVFALNALLQKEKLSMQVKKVLVAFLPERVAKYIV 218

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           ++ R+      S   G  + A+  G ++ ++  L G+P  V + V   +M++IP      
Sbjct: 219 RVGRLSNNAFSSFLSGQCLEAVILGCLIFASMKLLGLPYAVLIAVFIGVMSLIPIIGGFI 278

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
              V + L+   +   A    +   +        + P +VG  + LP +     +  G  
Sbjct: 279 GCWVGVLLIFMVDWKQAIIFIIMFVVVQQFEGNVIYPHVVGNSVGLPAIWVLVAVTIGGN 338

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMA 348
             G++G+       +++  ++ E +  
Sbjct: 339 IAGIVGMIFSIPFCSVLYQLFSEIVNK 365


>gi|54310026|ref|YP_131046.1| putative permease PerM [Photobacterium profundum SS9]
 gi|46914465|emb|CAG21244.1| putative permease PerM [Photobacterium profundum SS9]
          Length = 356

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/349 (13%), Positives = 117/349 (33%), Gaps = 14/349 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +    I+    +++YF     AP+L A+++ +   WP+    + +     T   ++
Sbjct: 15  DPHAVSLIAILLGGFLTIYFFGNLIAPLLVAIVLAYLLEWPVMR--LERLGLPRTVAVLV 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +    L ++    L      ++    S V         +  ++S +P          +
Sbjct: 73  VLLIFAGLMVMAFFGLVPTIWHQVGNFASDVPTMFN---DLQHYVSSLPERYPDFVQPHQ 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            ++  ++L+       ++     +    S          + +I + + +FF  +D   + 
Sbjct: 130 AITFMETLREKVMGLGESVVKGSLASLVS-----LATIAVYLILVPLLVFFLLKDKDEML 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +  +          K+   + + I +   G        G+     + +  +   V L 
Sbjct: 185 ATMSGILPK-NRRLTSKVGAEMNEQISNYIRGKVTEIFIIGIASYITFAVMDLRYAVLLS 243

Query: 246 VITAIMAMIP-GGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V+  +  +IP  GA      V+ + L   G   +   L     +   +    L P L   
Sbjct: 244 VLVGLSVLIPYIGAAAVTVPVAMVGLFQWGLTPDFWWLLAAYGVIQALDGNVLVPVLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            + L  +     ++      G  G+F    L  L+  +W     +  ++
Sbjct: 304 AVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWGALPSSEPDD 352


>gi|88706616|ref|ZP_01104319.1| conserved hypothetical protein, membrane (DUF20) [Congregibacter
           litoralis KT71]
 gi|88699112|gb|EAQ96228.1| conserved hypothetical protein, membrane (DUF20) [Congregibacter
           litoralis KT71]
          Length = 383

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 59/324 (18%), Positives = 116/324 (35%), Gaps = 17/324 (5%)

Query: 11  IMRWMIMFIILVS----LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + RW ++F +  +     Y L+    P +   + G+   P+      +   S TF  ++ 
Sbjct: 16  VNRWPLVFAVFAAMAVLFYILEPILLPFVLGALTGYLGDPLVDRVEER-GGSRTFGVILV 74

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +    L +V L F     + ++  L+ ++         +  WL D+      S      
Sbjct: 75  FLFFTTLSLVALFFAVPVLLQQLDGLIGRI-------PVLYAWLRDVAVPWLQSRTLVTG 127

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL---SIIFMIIALFFFYRDGFS 183
            + PQ            +         SR     L   L   +I  + +  F+  RD   
Sbjct: 128 ANLPQIDWSAQLLENWQSLGKVTATTISRITGSGLGLLLGMANIALVPVVAFYLMRDWDD 187

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           I++++  L    + A  +++ R   +V+ +   G  I+    G +  +  +LAG+   + 
Sbjct: 188 IAERILHLMPKAWQAGTQQMVREADEVVGAFLRGQFIVMCALGALYAAGLYLAGIELALL 247

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           LG+I  + +++P    I     S+               +     +   I    L P LV
Sbjct: 248 LGLIAGLASIVPYLGFIVGITASLIAAWLQFHEPLPLLYVAAVFGVGQLIESMVLTPVLV 307

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGL 325
           G  I L  +   F L+ G +  G 
Sbjct: 308 GDRIGLHPVMVIFALMAGGQLAGF 331


>gi|167040126|ref|YP_001663111.1| hypothetical protein Teth514_1488 [Thermoanaerobacter sp. X514]
 gi|307724555|ref|YP_003904306.1| hypothetical protein Thet_1415 [Thermoanaerobacter sp. X513]
 gi|166854366|gb|ABY92775.1| protein of unknown function UPF0118 [Thermoanaerobacter sp. X514]
 gi|307581616|gb|ADN55015.1| protein of unknown function UPF0118 [Thermoanaerobacter sp. X513]
          Length = 341

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/349 (14%), Positives = 126/349 (36%), Gaps = 20/349 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFF----------APVLSALIIGFTSWPIYSSFISKKEESS 59
            I +  ++F+I+ +   L  F           +P   + +I +   P+      K   S 
Sbjct: 2   QIKKTYLLFLIIGATGLLYFFIKNWVSIKNILSPFFVSALIAYLLNPM-----VKFFNSK 56

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
            F   ++ + V  +    +LF  +Y +     L+++ +   Q        +  +   +  
Sbjct: 57  GFSISLSILLVFLIVASGILFFSFYIV---PLLINEFIALLQMIPFYAEEIQKLLIQLKF 113

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           + L   +L       +        N   +    A +  +  L   + II + I  F+F +
Sbjct: 114 NYL--SYLPPQVEKVLDKNLGSLNNAFTYHIDSAFKSVITILKDAVDIIIIPIVTFYFLK 171

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D     ++++ +    +   +  I + + K++         I+    +       L  V 
Sbjct: 172 DKKVFKEEIERILPQKYSTKFFNILKKIDKILSKYLRAQIYISTFVAIFTMIGLSLIKVK 231

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               +GV+  I+ +IP   PI     ++ + +  ++       +   +   + +  + P 
Sbjct: 232 YAFLIGVLAGILNIIPYVGPILSIIPTVLIGLLDSLTKGFWALIICLLVQQVENAFITPK 291

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           ++   + L  +   F L+ G    G+ GL +   ++A+I  I  E  + 
Sbjct: 292 IMSDSVGLHPVTVIFSLIAGGELFGIWGLLLSVPIVAMIKAIVIEIFIE 340


>gi|18309525|ref|NP_561459.1| permease [Clostridium perfringens str. 13]
 gi|18144202|dbj|BAB80249.1| probable permease [Clostridium perfringens str. 13]
          Length = 377

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/333 (13%), Positives = 113/333 (33%), Gaps = 8/333 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-------STFLAVIATVSVMC 72
           I+  LY   G   P +  + I F               S        +F   +  +  + 
Sbjct: 31  IINFLYKFLGILKPFIWGIAIAFILNIPVKLIEKNLGNSKFFKGMKRSFSITLTFLFFIL 90

Query: 73  LFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              + +LF+    +  +  L++ +    +Q    +     +        +     L +  
Sbjct: 91  AITLFILFVIPQLLSSISTLMNSIPEYLSQFEKFLEVNAINNSQSQVMMQNIINELLNMW 150

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              +   + +    + ++  F        +++ LS+I  I  L         +   + + 
Sbjct: 151 KEILKVTSQIVGTSLGYLLDFTLGITYGVINFFLSLILAIYMLASKEILISQLKLIIYAF 210

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                     ++  +  ++     LG    A+  G++      +  +P  + + V+  + 
Sbjct: 211 VSKNKADRIIELGNMCNEMFSKFILGQCTEALVIGVLCFIGMIILKMPYALLISVVIGVT 270

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           A+IP       T  S ++++  +   A    ++  +   +    + P +VG  I L  L 
Sbjct: 271 ALIPVFGAFLGTIPSAFIILIIDPIKALWFIIFIIVLQQLEGNLIYPRVVGSSIGLSALW 330

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             F ++ G    G++G+ IG  +  ++  I K 
Sbjct: 331 VMFAMIVGGSLFGIIGMLIGIPIFGVVFKILKR 363


>gi|282165362|ref|YP_003357747.1| hypothetical protein MCP_2692 [Methanocella paludicola SANAE]
 gi|282157676|dbj|BAI62764.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 380

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 57/369 (15%), Positives = 139/369 (37%), Gaps = 29/369 (7%)

Query: 12  MRWMI--MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +W+I    ++L+ L+ +  F   ++ A+ I + + PI        + + T L  +  + 
Sbjct: 11  AKWLIFGAALVLLLLWVMWPFLTVIVYAVFIYYIARPIKRMLQPHIK-NETLLVTVCMLL 69

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV---PRWLSDIPGGMWASELWTKH 126
           ++   ++ + +     + +   L++ + L +    P+      +S+I        + + +
Sbjct: 70  LVLPLLLIIGYTLLLALSQFNALITGIGLQSLPEGPLSNMSNVVSEIQRNFTMENIMSGN 129

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                   +        + I  + +     G   +D    +  +I+ +F+  R+   +  
Sbjct: 130 FGAIVPQDLYEALQGYGSSIANLQQLVISTGSTIVDIIFKLFLVIVIVFYMLREDEKLVS 189

Query: 187 QLDSLGEHLFPAYWK---KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG------ 237
            L S    L   Y     K  R V + +   F G  +  +   ++  + + +        
Sbjct: 190 WLKSTFPSLMAEYDGMLLKYGRAVDEDLEKIFFGNILSIVFFAILAATVFSVLNMFAPPG 249

Query: 238 --VPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATC---------LFLWG 285
             +PS + +G++  + A++P  G  I    + +Y+L+   +              +    
Sbjct: 250 MSIPSPILMGILCGVSALLPVVGMYIVIVPLLLYVLVISLMAGTFFPNIVFYIMMVAAIM 309

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
                + D  LRPF+     ++      F  + G    G+ GLFIG +++ L+   ++  
Sbjct: 310 IFVEVLPDFVLRPFM--SSGRVHTGLLMFAYILGPIVFGIAGLFIGAIVLVLLTHYFRIV 367

Query: 346 IMAIKENKE 354
           + AI    E
Sbjct: 368 VPAISRESE 376


>gi|307152495|ref|YP_003887879.1| hypothetical protein Cyan7822_2636 [Cyanothece sp. PCC 7822]
 gi|306982723|gb|ADN14604.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7822]
          Length = 370

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/311 (15%), Positives = 109/311 (35%), Gaps = 13/311 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
            + +L+A ++ F     Y+    K        AV   +    +FI+  + L    +++ +
Sbjct: 36  ISILLTAALMAFLLN--YAVMALKLILPRPIAAVFVYLGAALIFIIVGVTLLPPVVIQGR 93

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           +L+  +      G                        S   +        + + G+  + 
Sbjct: 94  QLLIGLPELIAQGQQQLNTFQAWSVDHNLPFDLQLITSDLFNRIQTQARIIASTGLGLVL 153

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                      ++ L +I +++  F+   DG  +   L S      P    +++  + K 
Sbjct: 154 --------GTFNWFLDVILILVISFYMLIDGERLWDGLTSF---FSPKIQDQLTISLEKN 202

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           ++    G  I+ +   + L  A+ L   P  +   V   +M ++P         + + +L
Sbjct: 203 LQRFVTGQLILGLFMSVSLTVAFRLLNTPYFLLFAVFIGLMELLPFIGATLGIGIVVIIL 262

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              N + A  + +   I   I D  + P ++G    L  +  F  L+ G +  G LG+ +
Sbjct: 263 AFINWWLAVKVLIVSVIIQQIKDNLISPRIMGNLTGLSPVIIFMALLLGAKIGGFLGVIL 322

Query: 331 GPVLMALIAVI 341
              L  ++  +
Sbjct: 323 AIPLTGVVKGL 333


>gi|254414198|ref|ZP_05027965.1| conserved domain protein, putative [Microcoleus chthonoplastes PCC
           7420]
 gi|196178873|gb|EDX73870.1| conserved domain protein, putative [Microcoleus chthonoplastes PCC
           7420]
          Length = 370

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/324 (14%), Positives = 119/324 (36%), Gaps = 10/324 (3%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
           +++  T  PI +S             ++  + ++ + +   + +      +++ L  ++ 
Sbjct: 40  VVLAATLAPIINSAQQ-LGIPRWLAVLLVYLGLLTILVGVGVLIGPTVAQQIQRLFRRLP 98

Query: 98  LANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFG 157
              +    +   +  +   +  SE     +   Q+L   +           +   +    
Sbjct: 99  DYLE---VLESLIDRLAVRLGISEPIISQIFDTQTLTNWA-----IRSSQQLVVRSYGVT 150

Query: 158 MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG 217
             FL   LS+I  +    +       + + + SL    +        + V + + +   G
Sbjct: 151 RGFLGGILSVILALFLSGYMLSGAKRLIKGIVSLFPKPWDDRLAAQVKPVSRRMGNYIQG 210

Query: 218 MTIIAIGEGLVLGSAYWLAGV-PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIF 276
             +++   G+ +     + G+    + LGVI     +IP   P+     ++ + I    +
Sbjct: 211 RVLVSGILGVAITIGLKVLGITEFALGLGVIAGGTNLIPFFGPVLGAIPALIVAIAQGGW 270

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
               +FL   I   +    L P LVG  +++  L     +VGG + +G++G  I P  +A
Sbjct: 271 TFLWVFLLFVIIQNVETYVLDPLLVGSSVRVHPLYQLLAVVGGAQVLGIIGALIVPPWIA 330

Query: 337 LIAVIWKESIMAIKENKEKISSNF 360
             +V+ +   +  K   E+ ++  
Sbjct: 331 GASVLLENLYLQPKRQAEQQAAAL 354


>gi|313205129|ref|YP_004043786.1| hypothetical protein Palpr_2671 [Paludibacter propionicigenes WB4]
 gi|312444445|gb|ADQ80801.1| protein of unknown function UPF0118 [Paludibacter propionicigenes
           WB4]
          Length = 361

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 64/330 (19%), Positives = 134/330 (40%), Gaps = 16/330 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +  +L  LY  +G   P++ A II     P+    +S +      +A+I T+ +M L IV
Sbjct: 21  LSALLAILYIAQGIIVPLVFAFIIAILLHPVVKFLVSIRINR--IMAIIITLLLMALIIV 78

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             + L Y   +   +  S  +L  +    +   +       + S+ +    +   +    
Sbjct: 79  AFIALIYKEAVSFSD--SWPLLVKKFTAILDDTIQ------YTSQYFNIRPALIHTWITK 130

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           ++  L T     I +     G       L  +++ + L++       + + +  L +   
Sbjct: 131 TQHELVTINSTLIGQTLVTVGSSVATMLLVPVYIFVILYY----QPLLIEFVHRLFDEAH 186

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               + I+     VI+   LG+ I AI  G++      L G+   + LGV+ A++ +IP 
Sbjct: 187 QNQVRSITTKTKSVIQHYLLGLIIEAIIVGILNTVGLLLLGIQYAILLGVLGALLNLIPY 246

Query: 257 GAPISFTAV--SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
              I    +   + L+ K + + A  +F        I +  + P +V   +K+  L +  
Sbjct: 247 IGGIIAVGLFMMVALVTKESSWFALYVFGVHTFIQIIDNDYIVPKIVASKVKINALFSIV 306

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            ++ G    G+ G+F+   L+A++ VI+  
Sbjct: 307 VVLVGNALWGVPGMFLSLPLLAIVKVIFDH 336


>gi|168210323|ref|ZP_02635948.1| putative membrane protein [Clostridium perfringens B str. ATCC
           3626]
 gi|168214514|ref|ZP_02640139.1| putative membrane protein [Clostridium perfringens CPE str. F4969]
 gi|182626553|ref|ZP_02954301.1| putative membrane protein [Clostridium perfringens D str. JGS1721]
 gi|170711626|gb|EDT23808.1| putative membrane protein [Clostridium perfringens B str. ATCC
           3626]
 gi|170714004|gb|EDT26186.1| putative membrane protein [Clostridium perfringens CPE str. F4969]
 gi|177908141|gb|EDT70707.1| putative membrane protein [Clostridium perfringens D str. JGS1721]
          Length = 366

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/336 (16%), Positives = 116/336 (34%), Gaps = 4/336 (1%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           ++ +++ +     P L A II +   PI + F  K + S     VI  +  +    +   
Sbjct: 34  VMSAIHTILAVLLPFLLAFIIAYILNPIVNLFSKKFKLSRGISIVITYLIFVTSISLAAT 93

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ-SLKILSE 138
           +L       + EL+  +         V    ++I       E    +L H   +  I   
Sbjct: 94  YLLPKLYTSLIELIDNIPAFTN---YVQNLFTEIMASFKVPEGINSYLPHGDTNKLITFI 150

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             + T   +++   A       +++    +  I  L    +     S+    +       
Sbjct: 151 GSMVTVLSNWLLDAAISLTSSIINWIFGFLISIYVLVDKDKFLAHSSKVTRIIFGKDLGN 210

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              +  +I+ + I +      I ++  G++      +      + L V+  I  MIP   
Sbjct: 211 EILEFIKILNEKIGTYVGIKAIDSLIIGVLAFIGLTIMKSEYALLLSVVVGITNMIPYFG 270

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P     V  ++ +  +   A  + ++  I        L P L+G  + L       G+  
Sbjct: 271 PFIGMVVGFFINVFISPMKAVIVLIYLFILQQFDAWYLDPKLIGNRVGLSPFLVILGVTL 330

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G    G +G+ +G  +M++I +   + I   +   E
Sbjct: 331 GGAIYGPIGMILGSPVMSVIRIYTLKLIKKFEYRAE 366


>gi|325680866|ref|ZP_08160404.1| putative membrane protein [Ruminococcus albus 8]
 gi|324107646|gb|EGC01924.1| putative membrane protein [Ruminococcus albus 8]
          Length = 439

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/337 (13%), Positives = 104/337 (30%), Gaps = 19/337 (5%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEE----------SSTFLAVIATVSVMCLFIVPLLFLF 82
           PV   L+I F + PI     +   +             F+ +I+ +    LF+  +  L 
Sbjct: 49  PVTWGLVIAFLTNPIMEKTSALLRKFYKTDEQRTKRKGFIKIISVIITELLFLGVMTGLV 108

Query: 83  YYGMLEMKELVSKVVL-ANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
              + E+ + V ++          V +W++       + E          +  + +    
Sbjct: 109 AIVVPELIKSVMEIFDNTGSIVASVQKWINKFLRNYPSLEQAATKWLSDFNTDLGTIYDN 168

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
               ++ I   A     +  ++ L +I  +    +       +  Q+  +   +      
Sbjct: 169 VKPMLENILTGAWGVVTVVKNFLLGLIVSV----YMLCSKEKLLAQIKKIIISITKKRTC 224

Query: 202 KIS----RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
           +           V      G  I +   GL+      + G+P    + V+  +  +IP  
Sbjct: 225 QKIMSVCSQANTVFSGFITGKLIDSTIIGLICFIGLTIMGMPYSTMISVLIGVTNIIPFF 284

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P+     +  L++           ++  +        L P ++G    LP       L+
Sbjct: 285 GPLIGAVPTSLLILLLEPKKCIIFVIFIIVLQQFDGNILGPKILGDSTGLPGFWVLISLL 344

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                 G +G+ +     AL     + S+      K 
Sbjct: 345 VFGGLFGFVGMVMAVPTSALAYSFLRSSVEEKLRRKN 381


>gi|319775891|ref|YP_004138379.1| putative permease PerM [Haemophilus influenzae F3047]
 gi|319896573|ref|YP_004134766.1| permease perm homolog [Haemophilus influenzae F3031]
 gi|329123740|ref|ZP_08252300.1| PerM family permease [Haemophilus aegyptius ATCC 11116]
 gi|317432075|emb|CBY80425.1| putative permease PerM homolog [Haemophilus influenzae F3031]
 gi|317450482|emb|CBY86699.1| Putative permease PerM homolog [Haemophilus influenzae F3047]
 gi|327469939|gb|EGF15404.1| PerM family permease [Haemophilus aegyptius ATCC 11116]
          Length = 349

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/341 (15%), Positives = 117/341 (34%), Gaps = 11/341 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             + +PQ +    I+    +S+YF     AP+L AL++ +      +      +      
Sbjct: 11  RRLSDPQAMGLLAILLFGFISIYFFGDLIAPLLIALVLSYLLEMPINFLNQYLKCPRMLA 70

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++   S + L  +  L L      +   L+S +            WL ++P        
Sbjct: 71  TILIFGSFIGLAAIFFLVLVPMLWNQTISLLSDLPAMFNKS---NEWLLNLPKNYPELID 127

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           ++   S   S++     F ++     +        M  +   +    + + +FF  +D  
Sbjct: 128 YSMVDSIFNSVREKILGFGESAVKLSLASI-----MNLVSLGIYAFLVPLMMFFMLKDKS 182

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + Q +           +K + + + + I +   G  +  +   L+    + + G+   +
Sbjct: 183 ELLQGVSRFLPKNRNLAFK-VWKEMQQQISNYIHGKLLEILIVTLITYIIFLIFGLNYPL 241

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFL 300
            L     +  ++P  GA I    V++  L +  I       +       ++D   L P+L
Sbjct: 242 LLAFAVGLSVLVPYIGAVIVTIPVALVALFQFGISPTFWYIIIAFAVSQLLDGNLLVPYL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
               + L  L     ++      G  G+F    L  L+  +
Sbjct: 302 FSEAVNLHPLIIIISVLIFGGLWGFWGVFFAIPLATLVKAV 342


>gi|240141033|ref|YP_002965513.1| putative membrane transport protein [Methylobacterium extorquens
           AM1]
 gi|240011010|gb|ACS42236.1| putative membrane transport protein [Methylobacterium extorquens
           AM1]
          Length = 652

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/368 (11%), Positives = 107/368 (29%), Gaps = 29/368 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R+ +     +   +++  +  +LYF +    PV  A+++ F   P   +    +     
Sbjct: 11  LRQALPVVTTLASMLLVVTLAGALYFGRDILVPVALAILLSFVLVPAVRALRRVRVPRVA 70

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM-WA 119
            + ++  ++        L  +      E  +L + +   +         L          
Sbjct: 71  AVLLVVVLAFGL-----LGAIGSLIAREAAQLATDLPRYSLTLRDKITALRAATAERGSL 125

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDF---------------------IPRFASRFGM 158
           S+ ++      + +    +        +                      +         
Sbjct: 126 SDTFSGFFDMAEEIGKELQPPAAKTKSETNAPLGTAERPMQVEIHAPRTGLLTTLGSVAG 185

Query: 159 IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
             L    ++  +++   F       +  +   L                   +   F+  
Sbjct: 186 GVLHPLATLGLILLFTIFILLQREDLRNRAIRLAGSSDLRRTTAAIDDATSRLSRFFVAQ 245

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIF 276
            I+ +  GLV+G   W  GVPS +  GVI  I   +P    +      ++I + +     
Sbjct: 246 LILNVAFGLVIGVGLWFIGVPSPILFGVIAGISRFVPYVGAVLSAALPLAIAVAVDPGWS 305

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            A  + +   +   I    + P L G    +  +             G +GL +   L  
Sbjct: 306 MAIQVAILFVVIEPIAGHVVEPLLYGHSTGISPIAVILAATIWTFLWGPIGLLLATPLTV 365

Query: 337 LIAVIWKE 344
            + V+ + 
Sbjct: 366 CLVVLGRH 373


>gi|229815777|ref|ZP_04446102.1| hypothetical protein COLINT_02826 [Collinsella intestinalis DSM
           13280]
 gi|229808693|gb|EEP44470.1| hypothetical protein COLINT_02826 [Collinsella intestinalis DSM
           13280]
          Length = 387

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 103/303 (33%), Gaps = 4/303 (1%)

Query: 47  IYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV 106
           +      +K      + V++ V V+       +      + E+      V       +P 
Sbjct: 69  LVERLPEEKRPQPGLVTVVSIVLVLIAIAGVAVMAVTMLVPELIASARTVAPLLAERLPE 128

Query: 107 PRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLS 166
              +    G      +     +   + +      L   G+  I           +    S
Sbjct: 129 IERVLAAEGVDVDKLMAWLQPAAGSASRSQGLQGLMNFGLGSIATSVFAAARSTVSVVSS 188

Query: 167 IIFMIIALFFFYRD----GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
            +F  +   +        G  +++ +D+       +  + ++ +          G  + A
Sbjct: 189 TVFAFVIAVYVLASKRVLGRQVNRMMDAHLAPRHASRIRHVAALATDTYSKFLSGQCLEA 248

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF 282
              G ++  A+ L  +P    +G +TA+ A +P     +  A+  +L +  +   A    
Sbjct: 249 CILGTLIFIAFSLFRLPYAGLIGFLTAVFAFVPYVGAFASCAIGAFLTLLASPGQAIICV 308

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +      F+ ++ + P +VG  + L  L T    + G +  G++G+     ++A++  + 
Sbjct: 309 IVYLAVQFVENQFIYPHVVGSSVGLSALWTLIAALVGGKLFGIVGIVFFIPIVAVLYELV 368

Query: 343 KES 345
           ++ 
Sbjct: 369 RQW 371


>gi|110798580|ref|YP_694976.1| hypothetical protein CPF_0522 [Clostridium perfringens ATCC 13124]
 gi|110673227|gb|ABG82214.1| putative membrane protein [Clostridium perfringens ATCC 13124]
          Length = 377

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/333 (13%), Positives = 112/333 (33%), Gaps = 8/333 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE-------SSTFLAVIATVSVMC 72
           I+  LY   G   P +  + I F                        +F   +  +  + 
Sbjct: 31  IMNFLYKFLGILKPFIWGIAIAFILNIPVKLIEKNLGNGKFFKGMKRSFSITLTFLFFIL 90

Query: 73  LFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              + +LF+    +  +  L++ +    +Q    +     +        +     L +  
Sbjct: 91  AITLFILFVIPQLLSSISTLMNSIPEYLSQFEKFLEVNAINNSQSQVMMQNIINELLNMW 150

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              +   + +    + ++  F        +++ LS+I  I  L         +   + + 
Sbjct: 151 KEILKVTSQIVGTSLGYLLDFTLGITYGVINFFLSLILAIYMLASKEILISQLKLIIYAF 210

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                     ++  +  ++     LG    A+  G++      +  +P  + + V+  + 
Sbjct: 211 VSKNKADRIIELGNMCNEMFSKFILGQCTEALVIGVLCFIGMIILKMPYALLISVVIGVT 270

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           A+IP       T  S ++++  +   A    ++  +   +    + P +VG  I L  L 
Sbjct: 271 ALIPVFGAFLGTIPSAFIILIIDPIKALWFIIFIIVLQQLEGNLIYPRVVGSSIGLSALW 330

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             F ++ G    G++G+ IG  +  ++  I K 
Sbjct: 331 VMFAMIVGGSLFGIIGMLIGIPIFGVVFKILKR 363


>gi|255282958|ref|ZP_05347513.1| membrane protein Lmo0908 [Bryantella formatexigens DSM 14469]
 gi|255266497|gb|EET59702.1| membrane protein Lmo0908 [Bryantella formatexigens DSM 14469]
          Length = 409

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/338 (15%), Positives = 116/338 (34%), Gaps = 20/338 (5%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEE---------SSTFLAVIATVSVMCLFIVPLLFL 81
             P L   +I F   P+    I                    ++A + V+ + ++ +L++
Sbjct: 74  LMPFLLGTLIAFILNPLIKWLIKLLSGPCRIKSQKVCKFTAIILAYLLVLGVIVICILYI 133

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               ++ + E+V+ +    +        L D       SEL               + F+
Sbjct: 134 VPQVVVSLTEIVANIPKLYEMTYDFFDNLQDRFPNADVSELQKIVDDILPDFVNTLKNFV 193

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            +  I  +   +       +++ ++II  +    +   D   + + +  +     P  + 
Sbjct: 194 -SGLIPAVYNMSVSIAKGLVNFVIAIIVSV----YMLTDKKDLKRSMKRILYCFVPVDYI 248

Query: 202 ----KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-G 256
               +I      +  +  +G  I +   G++      +  +P  + + VI  I  MIP  
Sbjct: 249 PKTLEILSECNSIFTNFIVGKAIDSTIIGVLCFILMSIFSMPYALLISVIVGITNMIPYF 308

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           G  I      I LLI  +   A    +   +        L P ++G  + L  L     +
Sbjct: 309 GPFIGAVPGVIILLII-DPLTALGFAVLIFLLQQFDGLYLGPKILGDTVGLKPLWIIISI 367

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             G    G+LG+F+   ++A++  +    +    E + 
Sbjct: 368 TVGGSLAGVLGMFLSVPVVAVLRYLLNLYLEYRLEKRH 405


>gi|15900756|ref|NP_345360.1| hypothetical protein SP_0873 [Streptococcus pneumoniae TIGR4]
 gi|14972346|gb|AAK75000.1| membrane protein [Streptococcus pneumoniae TIGR4]
          Length = 369

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/316 (13%), Positives = 107/316 (33%), Gaps = 6/316 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L     P L      + + PI +      + +     +I   +++   ++ +++L    
Sbjct: 37  VLNTIMIPFLLGGFFYYLTNPIVTFLNKVCKLNRLLGILITLCTLVWGMVIGVVYLLPIL 96

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  L   ++ +      V   + D+        L  +      +L  +    +  N 
Sbjct: 97  INQLSSL---IISSQTIYSRVQDLIIDLSNYPALQNLDVEATIQQLNLSYVD---ILQNI 150

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           ++ +           +   L +I   + L +F  DG      L+         +   + +
Sbjct: 151 LNSVSNSVGSVLSALISTVLILIMTPVFLVYFLLDGHKFLPMLERTILKRDRLHIAGLLK 210

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   I     G++I AI  G +    Y + G+   +   + + +  +IP   P      
Sbjct: 211 NLNATIARYISGVSIDAIIIGCLAYIGYSIIGLKYALVFAIFSGVANLIPYVGPSIGLIP 270

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            I   I  +        ++  +   +    L P +VG  +K+  +     L+      G+
Sbjct: 271 MIIANIFTDPHRLLIAVIYMLVVQQVDGNILYPRIVGSVMKVHPITILVLLLLSSNIYGV 330

Query: 326 LGLFIGPVLMALIAVI 341
           +G+ +     +++  I
Sbjct: 331 VGMIVAVPTYSILKEI 346


>gi|254509168|ref|ZP_05121267.1| permease PerM [Vibrio parahaemolyticus 16]
 gi|219547919|gb|EED24945.1| permease PerM [Vibrio parahaemolyticus 16]
          Length = 356

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/348 (15%), Positives = 122/348 (35%), Gaps = 14/348 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +    I+    +++YF     AP+L A+++ +   WP+    +S+     T   ++
Sbjct: 15  DPHAVSLVAILLFGFITIYFFGNLIAPLLVAIVLAYLLEWPVSQ--LSRLGVPRTLAVIL 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +    L +V +  L      ++  L++ +       + +  +++++P      E +  
Sbjct: 73  VILGFSSLMLVAVFGLVPTIWQQVGNLINDIPTMY---VGLQSFIAELPHRYPELENFQI 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S   + K  +    +T     +    S          + +I + + +FF  +D   + 
Sbjct: 130 VESLVTNAKNQAIGMGETVVKGSLASLVS-----LATLAVYLILVPLLVFFLLKDKQEMI 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +          K+   + + I +   G  +  +  G V    + +  +   V L 
Sbjct: 185 EMASGVLPR-NRRLANKVWHEMNEQISNYIRGKVMEILIVGGVSYVTFAILDLRYSVLLA 243

Query: 246 VITAIMAMIP-GGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V   +  +IP  GA      V+ + L   G       L +   I   +    L P L   
Sbjct: 244 VAVGLSVLIPYIGAAAVTVPVAMVGLFQWGLTPQFYWLLIAYGIIQALDGNVLVPVLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            + L  +     ++      G  G+F    L  L+  +W       +E
Sbjct: 304 AVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWNALPSHDEE 351


>gi|148656415|ref|YP_001276620.1| hypothetical protein RoseRS_2291 [Roseiflexus sp. RS-1]
 gi|148568525|gb|ABQ90670.1| protein of unknown function UPF0118 [Roseiflexus sp. RS-1]
          Length = 424

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/347 (13%), Positives = 115/347 (33%), Gaps = 15/347 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            + ++II   L+  +    P +  L++ +   P    F            +         
Sbjct: 53  ALALYIIGSMLWSTRPVLIPFVIGLVLAYLMAPAVDFFDRWMP--RWLAILAVYALGFLG 110

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD----IPGGMWASELWTKHLSH 129
                  +    + ++  L+ ++   ++  + V   +      +P  +    +     + 
Sbjct: 111 IAATFALIIPPLVEQVARLIRQLPSFSEVQMFVDSVVKQYRDQVPPSLQ-QPIEDSLANL 169

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            +SL+   +T+L+  G            +  + + L  I + I LF+   D        +
Sbjct: 170 LRSLQNNIDTYLQRGGA--FLLNQLIQLLNTVTFILGFISLPIWLFYVLYDKQQGRVFFN 227

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW---LAGVP---SHVA 243
            L      A +  +  I+  V+     G  I+ +  GL +G       + G P     + 
Sbjct: 228 QLVHPRARADFWNVWEIINNVLGGYIRGQIILCVAVGLAVGIGLVGLEMLGFPLGDYVLV 287

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           L +I  +   IP   P       + L    +      + +       + +  L P ++G 
Sbjct: 288 LALIAGVTEFIPVLGPTIGAIPGVILGFGISPTAGFAVLILYIAVQQLENSLLVPRIIGE 347

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            + +        ++      GLLG+ +    +A    ++K + + ++
Sbjct: 348 SVGVHPAVLTVAMIVMGTLFGLLGILLAAPAVATTRDLFKYAYLRLE 394


>gi|68248846|ref|YP_247958.1| putative permease PerM-like protein [Haemophilus influenzae
           86-028NP]
 gi|145632482|ref|ZP_01788216.1| lipoprotein NlpI [Haemophilus influenzae 3655]
 gi|145635144|ref|ZP_01790849.1| lipoprotein NlpI [Haemophilus influenzae PittAA]
 gi|229844941|ref|ZP_04465078.1| hypothetical protein CGSHi6P18H1_04272 [Haemophilus influenzae
           6P18H1]
 gi|68057045|gb|AAX87298.1| putative permease PerM homolog [Haemophilus influenzae 86-028NP]
 gi|144986677|gb|EDJ93229.1| lipoprotein NlpI [Haemophilus influenzae 3655]
 gi|145267565|gb|EDK07564.1| lipoprotein NlpI [Haemophilus influenzae PittAA]
 gi|229812075|gb|EEP47767.1| hypothetical protein CGSHi6P18H1_04272 [Haemophilus influenzae
           6P18H1]
          Length = 349

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/341 (15%), Positives = 117/341 (34%), Gaps = 11/341 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             + +PQ +    I+    +S+YF     AP+L AL++ +      +      +      
Sbjct: 11  RRLSDPQAMGLLAILLFGFISIYFFGDLIAPLLIALVLSYLLEMPINFLNQYLKCPRMLA 70

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++   S + L  V  L L      +   L+S +            WL ++P        
Sbjct: 71  TILIFGSFIGLAAVFFLVLVPMLWNQTISLLSDLPAMFNKS---NEWLLNLPKNYPELID 127

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           ++   S   S++     F ++     +        M  +   +    + + +FF  +D  
Sbjct: 128 YSMVDSIFNSVREKILGFGESAVKLSLASI-----MNLVSLGIYAFLVPLMMFFMLKDKS 182

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + Q +           +K + + + + I +   G  +  +   L+    + + G+   +
Sbjct: 183 ELLQGVSRFLPKNRNLAFK-VWKEMQQQISNYIHGKLLEILIVTLITYIIFLIFGLNYPL 241

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFL 300
            L     +  ++P  GA I    V++  L +  I       +       ++D   L P+L
Sbjct: 242 LLAFAVGLSVLVPYIGAVIVTIPVALVALFQFGISPTFWYIIIAFAVSQLLDGNLLVPYL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
               + L  L     ++      G  G+F    L  L+  +
Sbjct: 302 FSEAVNLHPLIIIISVLIFGGLWGFWGVFFAIPLATLVKAV 342


>gi|91789419|ref|YP_550371.1| hypothetical protein Bpro_3565 [Polaromonas sp. JS666]
 gi|91698644|gb|ABE45473.1| protein of unknown function UPF0118 [Polaromonas sp. JS666]
          Length = 356

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 125/345 (36%), Gaps = 11/345 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+ T          +I  + +V+L+ L     P + A ++ +   P+ +   S  +    
Sbjct: 1   MQFTHTQKSVAAWCLIAALAVVALWLLGPVLTPFVVAAVLAYALTPLVNRLDSLGKGRLP 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            +  +  V  + + ++  LFL       +  +++K +   +  +P+     +     W +
Sbjct: 61  RVVAVLLVEFLFIVVLLGLFLL------IVPIMAKELPLLREQVPLLADRLNTELAPWLA 114

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFF 177
           +   +      S+K     +L  N  D      S     G + L    + + + +ALF+ 
Sbjct: 115 KFGFRVSLDVASIKAFVLKYLNANFEDVFGSLLSSLKLGGSVALAIMGNAVLIPVALFYL 174

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             D  S   +   L        +   +     V+     G  ++ +   +   +   L G
Sbjct: 175 LMDWNSFVARALELVPPRLREGFDSFTSEADSVLGQYLRGQLLVMLIMAVFYATGLALFG 234

Query: 238 VPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
           +   V +GV T +   IP  G       A+   +L   ++     + +   +   I    
Sbjct: 235 LDLAVPIGVFTGLAMFIPYLGFGLGLVLAMLAGVLEFASLKALVMVAVVYGLGQVIESLY 294

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           L P LVG  I L  L   F L+   +  G +G+ +   + A++ V
Sbjct: 295 LTPRLVGERIGLHPLAVIFALLAFGQMFGFVGVLVALPVSAVLLV 339


>gi|225010757|ref|ZP_03701226.1| protein of unknown function UPF0118 [Flavobacteria bacterium
           MS024-3C]
 gi|225005128|gb|EEG43081.1| protein of unknown function UPF0118 [Flavobacteria bacterium
           MS024-3C]
          Length = 362

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 55/360 (15%), Positives = 127/360 (35%), Gaps = 21/360 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEE 57
           M   +++   +    I+  IL  LYFL         ++ A I+     PI     +K   
Sbjct: 1   MNAKIISSGILRALAIVVAILAGLYFLNAITTVLVYIVIAAIVSLIGRPIALFLKNKLRF 60

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
           + T  A+     ++ +  + +  +    + + + L    +   +  I           G+
Sbjct: 61  NRTIAAISTMAILLGILSMLIALVVPLLVQQGENLSLLNIKGLKSSITDLYAEITAYFGL 120

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
             + L+ +             + + T  ++ +P F +    +  ++   +  +    FFF
Sbjct: 121 ENNSLFAQFQD---------SSLITTLSLEQLPAFFNAVLGLLGNFGAGLFSVAFISFFF 171

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            +D       +            K+    +  ++   FLG+    +   ++      +  
Sbjct: 172 LKDSELFENGILMWVPSKENLKTKEAFAKIKSLLSRYFLGLLFQILILFVIYSIVLSVFS 231

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA--------TCLFLWGAIEL 289
           VP+ + +  + A++ +IP   PI    + ++L +   +  +        T   + G I  
Sbjct: 232 VPNAMVIAFLCALLNLIPYVGPIVGGMLMMFLTMSSQLGASFNEIILPKTTYVMIGFIIG 291

Query: 290 FIVDKTL-RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            +VD  L +P +    +K   L  F  ++ G    G+ G+ +   L   I V+ K     
Sbjct: 292 QLVDNFLSQPLIFSKSVKSHPLEIFLIILCGGLLWGVTGMVVAIPLYTAIKVVLKVFFTE 351


>gi|15602996|ref|NP_246068.1| hypothetical protein PM1131 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721477|gb|AAK03215.1| PerM [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 354

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/350 (14%), Positives = 117/350 (33%), Gaps = 13/350 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +PQ +  + I+    +S+YF     AP+L A+++ +   WPI      K +        I
Sbjct: 15  DPQAMGLFAILLFGFISIYFFSHLIAPLLIAIVLAYLLEWPI-RVLTEKLKFPRLLSTAI 73

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
                + L +V +L        +   LV+ +         +  WL  +P        +  
Sbjct: 74  IFGGFLGLILVIVLVFIPTLWTQTLNLVTDLPHMFNK---LNEWLLSLPEHYPELVDYQT 130

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S   +++     F ++     +    S   +    + + ++      FF  +D   + 
Sbjct: 131 IDSVLSTVRSKILGFGESALKFSLTSLLSLVTLGIYAFLVPLMV-----FFLLKDKTELI 185

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +              + + + + I +   G     I    V  + +    +   + L 
Sbjct: 186 ASVSRFLPR-NRTLASSVWKEMQQQIANYIRGKLFEIIIVTAVTYAIFIFFNLNYSLLLA 244

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGG 303
           V   +  ++P  GA +    +++  + +  I       +   +   I+D   L PFL   
Sbjct: 245 VAVGLSVLVPYIGAVLVTIPIALVAVAQFGITPTFWYIITAYVISQILDGNLLVPFLFSE 304

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            + L  L     ++      G  G+F    L  L+  +        ++ +
Sbjct: 305 AVNLHPLTIIIAVLIFGGLWGFWGVFFAIPLATLVKAVVNAWPSTEQDTR 354


>gi|118466956|ref|YP_884090.1| hypothetical protein MAV_4969 [Mycobacterium avium 104]
 gi|118168243|gb|ABK69140.1| conserved hypothetical protein [Mycobacterium avium 104]
          Length = 382

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 98/290 (33%), Gaps = 15/290 (5%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
           ++ +          +  +    +    L F+    +  +  L  +V  + +      RWL
Sbjct: 64  WLDRHGLPRGGAVALVLLGGFAILGGILAFVVLQFIDGLPGLTEQVTQSIESTR---RWL 120

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
            + P  + + ++ +   +  ++L               +   A        +   + + +
Sbjct: 121 INGPAHLRSEQIDSAGNAAIEALHNNQAK---------LTSGALSTAATVTELVTAAVLV 171

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           +  L FF   G +I + +  +          +        +        ++A+ +   +G
Sbjct: 172 LFTLIFFLYGGRNIWRYVVQIVPAHARERVHEAGSAGYGSLIGYVRATFLVALTDAAGVG 231

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIE 288
           +   + G+P  + L  +  + A IP    +   F AV + LL KG I  A          
Sbjct: 232 AGLAIMGIPLALPLASLVFLGAFIPLVGAVVAGFLAVVVALLAKG-IVYALITLGLLVAV 290

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             I    L+P ++G  + +  L     +  G    G++G  +    +A +
Sbjct: 291 NQIEAHLLQPLVMGRAVSIHPLAVVLAISTGGVLAGIVGALLAVPTVAFL 340


>gi|218548074|ref|YP_002381865.1| permease [Escherichia fergusonii ATCC 35469]
 gi|218355615|emb|CAQ88226.1| putative permease [Escherichia fergusonii ATCC 35469]
 gi|324112983|gb|EGC06959.1| hypothetical protein ERIG_02588 [Escherichia fergusonii B253]
 gi|325496477|gb|EGC94336.1| permease [Escherichia fergusonii ECD227]
          Length = 353

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/346 (14%), Positives = 121/346 (34%), Gaps = 12/346 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      ++F  G  AP+L A+++ +    +     ++ E     
Sbjct: 10  RRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAY----LLEWPTARLESIGCS 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            ++  ++ ++    + LL  F    +  ++ +  +         +  + + +P    A  
Sbjct: 66  RSLATSLVLIVFVGILLLMAFVVLPIVWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALM 125

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +  ++++    +       D + +F+    +  L   + ++ + + +FF  +D 
Sbjct: 126 DAGIIDAMAENMRTRMLSI-----SDSVVKFSLASLVGLLTLAVYLVLVPLMVFFLIKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++ + + + I +   G  +  +  G+     + L G+   
Sbjct: 181 QQMLNAVRRVLPRNRGLAG-QVWQEMNQQITNYIRGKVLEMVVVGVATWLGFLLFGLNYS 239

Query: 242 VALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP  GA +    V  + L   G        F    I   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAFVVTIPVVCVALFQFGLGTEFWSCFAVYLIIQALDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           L    + L  L     +V      G  G+F    L  LI  +    
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAW 345


>gi|41409738|ref|NP_962574.1| hypothetical protein MAP3640 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41398570|gb|AAS06190.1| hypothetical protein MAP_3640 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 382

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 98/290 (33%), Gaps = 15/290 (5%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
           ++ +          +  +    +    L F+    +  +  L  +V  + +      RWL
Sbjct: 64  WLDRHGLPRGGAVALVLLGGFAILGGILAFVVLQFIDGLPGLTEQVTQSIESTR---RWL 120

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
            + P  + + ++ +   +  ++L               +   A        +   + + +
Sbjct: 121 INGPAHLRSEQIDSAGNAAIEALHNNQAK---------LTSGALSTAATVTELVTAAVLV 171

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           +  L FF   G +I + +  +          +        +        ++A+ +   +G
Sbjct: 172 LFTLIFFLYGGRNIWRYVVQIVPAHARDRVHEAGSAGYGSLIGYVRATFLVALTDAAGVG 231

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIE 288
           +   + G+P  + L  +  + A IP    +   F AV + LL KG I  A          
Sbjct: 232 AGLAIMGIPLALPLASLVFLGAFIPLVGAVVAGFLAVVVALLAKG-IVYALITLGLLVAV 290

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             I    L+P ++G  + +  L     +  G    G++G  +    +A +
Sbjct: 291 NQIEAHLLQPLVMGRAVSIHPLAVVLAISTGGVLAGIVGALLAVPTVAFL 340


>gi|283786108|ref|YP_003365973.1| putative permease [Citrobacter rodentium ICC168]
 gi|282949562|emb|CBG89178.1| putative permease [Citrobacter rodentium ICC168]
          Length = 354

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 58/347 (16%), Positives = 119/347 (34%), Gaps = 14/347 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +P+ I   +I+      L+F  G  AP+L ++++ +   WP      +       
Sbjct: 10  RRRFSDPEAIALLVILVAGFGILFFFSGLLAPLLVSIVLAYLLEWP-TVRLEAIGCSRR- 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               +AT  V+ +F+  LL +    M        + +   +    +   LSD    +   
Sbjct: 68  ----LATSVVLIVFVGILLLMALVVM---PVAWQQGIYLIRDMPGMLNKLSDFAATLPRR 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                      ++     T + T G D + +++    +  L   + ++ + + +FF  +D
Sbjct: 121 YPALMDAGIIDAMAENMRTRMLTLG-DSVVKYSLASLVGLLTLAVYLVLVPLMVFFLLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +          ++ + + + I +   G  +  +  G+     + L G+  
Sbjct: 180 KEQMLNAVRRVLPRNRGLAG-QVWKEMNQQITNYIRGKVLEMVVVGVATWLGFLLFGLNY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V+     +IP  GA +    V  + L   G        F    I   +    L P
Sbjct: 239 SLLLAVLVGFSVLIPYIGAFVVTLPVVGVALFQFGLGTEFWSCFAVYLIIQALDGNLLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L    + L  L     +V      G  G+F    L  LI  +    
Sbjct: 299 VLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVHAW 345


>gi|18309570|ref|NP_561504.1| permease [Clostridium perfringens str. 13]
 gi|168207396|ref|ZP_02633401.1| putative membrane protein [Clostridium perfringens E str. JGS1987]
 gi|18144247|dbj|BAB80294.1| probable permease [Clostridium perfringens str. 13]
 gi|170661234|gb|EDT13917.1| putative membrane protein [Clostridium perfringens E str. JGS1987]
          Length = 366

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/336 (16%), Positives = 116/336 (34%), Gaps = 4/336 (1%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           ++ +++ +     P L A II +   PI + F  K + S     VI  +  +    +   
Sbjct: 34  VMSAIHTILAVLLPFLLAFIIAYILNPIVNLFSKKFKLSRGISIVITYLIFVTSISLAAT 93

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ-SLKILSE 138
           +L       + EL+  +         V    ++I       E    +L H   +  I   
Sbjct: 94  YLLPKLYTSLIELIDNIPAFTN---YVQNLFTEIMASFKVPEGINSYLPHGDTNKLITFI 150

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             + T   +++   A       +++    +  I  L    +     S+    +       
Sbjct: 151 GSMVTVLSNWLLDAAISLTSSIINWIFGFLISIYVLVDKDKFLAHSSKVTRIIFGKNLGN 210

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              +  +I+ + I +      I ++  G++      +      + L V+  I  MIP   
Sbjct: 211 EILEFVKILNEKIGTYVGIKAIDSLIIGVLAFIGLTIMKSEYALLLSVVVGITNMIPYFG 270

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P     V  ++ +  +   A  + ++  I        L P L+G  + L       G+  
Sbjct: 271 PFIGMVVGFFINVFISPMKAVIVLIYLFILQQFDAWYLDPKLIGNRVGLSPFLVILGVTL 330

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G    G +G+ +G  +M++I +   + I   +   E
Sbjct: 331 GGAIYGPIGMILGSPVMSVIRIYTLKLIKKFEYRAE 366


>gi|218532471|ref|YP_002423287.1| hypothetical protein Mchl_4584 [Methylobacterium chloromethanicum
           CM4]
 gi|218524774|gb|ACK85359.1| protein of unknown function UPF0118 [Methylobacterium
           chloromethanicum CM4]
          Length = 652

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/368 (11%), Positives = 107/368 (29%), Gaps = 29/368 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R+ +     +   +++  +  +LYF +    PV  A+++ F   P   +    +     
Sbjct: 11  LRQALPVVTTLASMLLVVTLAGALYFGRDILVPVALAILLSFVLVPAVRALRRVRVPRVA 70

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM-WA 119
            + ++  ++        L  +      E  +L + +   +         L          
Sbjct: 71  AVLLVVVLAFGL-----LGAIGSLIAREAAQLATDLPRYSLTLRDKITALRAATAERGSL 125

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDF---------------------IPRFASRFGM 158
           S+ ++      + +    +        +                      +         
Sbjct: 126 SDTFSGFFDMAEEIGKELQPPAAKTESETNAPLGTAERPMQVEIHAPRTGLLTTLGSVAG 185

Query: 159 IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
             L    ++  +++   F       +  +   L                   +   F+  
Sbjct: 186 GVLHPLATLGLILLFTIFILLQREDLRNRAIRLAGSSDLRRTTAAIDDATSRLSRFFVAQ 245

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIF 276
            I+ +  GLV+G   W  GVPS +  GVI  I   +P    +      ++I + +     
Sbjct: 246 LILNVAFGLVIGVGLWFIGVPSPILFGVIAGISRFVPYVGAVLSAALPLAIAVAVDPGWS 305

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            A  + +   +   I    + P L G    +  +             G +GL +   L  
Sbjct: 306 MAIQVAILFVVIEPIAGHVVEPLLYGHSTGISPIAVILAATIWTFLWGPIGLLLATPLTV 365

Query: 337 LIAVIWKE 344
            + V+ + 
Sbjct: 366 CLVVLGRH 373


>gi|74318271|ref|YP_316011.1| putative permease [Thiobacillus denitrificans ATCC 25259]
 gi|74057766|gb|AAZ98206.1| putative permease [Thiobacillus denitrificans ATCC 25259]
          Length = 389

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/324 (15%), Positives = 108/324 (33%), Gaps = 18/324 (5%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P++ A+II +   P                 ++    ++ L +     L Y    E  
Sbjct: 55  FIPLVLAVIISYALAPPMRLL-----GRLHVPQIVGASLLLALIVGAGGSLAYSLRDEAI 109

Query: 91  ELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF- 148
            ++  +   A +    V + ++ +  G   +           + +  S+  +        
Sbjct: 110 GMIETLPQAAKKLRRTVQKEIAGLESGAIGNVQEAASQIERAARETASDPVVPRGVTRVQ 169

Query: 149 -------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                  +  +     +  L      + ++   FF    G +  ++L  +    F     
Sbjct: 170 IEEPRFRLEDYLWNGTLGALSIVSLAVMVLFLAFFMMISGDTYRRKLVQISGPAFSKKKI 229

Query: 202 --KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGA 258
             ++   +   I+   L         GL   +A+   GV      GV+  ++ +IP  GA
Sbjct: 230 TLQVLNEISVQIQRYLLVQAFAGAIVGLATWAAFSWLGVEHAALWGVVAGVLNIIPYLGA 289

Query: 259 PISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            I     ++  LL  G++  A  +     +   +    L P+L G   ++  +  F G++
Sbjct: 290 VIVAGGAALVGLLQFGSVSTALTVGGVSLVINSLEGYLLMPWLTGRANRMNAVVIFIGVL 349

Query: 318 GGVRTMGLLGLFIGPVLMALIAVI 341
                 G  GL +G  +M  I  I
Sbjct: 350 FWGWLWGAWGLLLGMPIMIAIKAI 373


>gi|16331809|ref|NP_442537.1| hypothetical protein sll0597 [Synechocystis sp. PCC 6803]
 gi|1001769|dbj|BAA10607.1| sll0597 [Synechocystis sp. PCC 6803]
          Length = 375

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/309 (15%), Positives = 107/309 (34%), Gaps = 10/309 (3%)

Query: 50  SFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW 109
             + +K     +      +  + +  + LL +    + ++ +L+  +    + G      
Sbjct: 71  RILVEKGLKRPWAVASVLLIALVVISLFLLIVIPLAIDQLGQLLDNLPGWFRSGNAQLLM 130

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
           L       W +E +       Q L   +   L      F  +     G + +   ++ + 
Sbjct: 131 LQ-----AWVNEHYANLQVDLQPLISQAIEKLSRILNSFGNQLLGLVG-VTISTSINGLI 184

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
           +++   F    G  I   + S   H    + + +  ++       F    I+A    +  
Sbjct: 185 LLVLTIFLVLGGEKIWDGIFSWFPH---PWQRDLQNLIRDTFEGYFATQAILAGILSVAQ 241

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
              + L   P  +   +   +  +IP  + +S   +S+ L+++ N +    + L   I  
Sbjct: 242 MVVFTLLQAPYAILFAITIGLSTLIPFASALSIIVISLLLMLE-NFWLGVKILLAAVIVG 300

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            I D  + P L+G    L        L  G +  G+LGL +   L ++I           
Sbjct: 301 QINDNVISPRLMGNRTGLNPAWIIVSLFVGSKLGGVLGLLVAVPLASVIKATSDRLRGLP 360

Query: 350 KENKEKISS 358
           K++ E+ + 
Sbjct: 361 KKSGEQPAE 369


>gi|300864368|ref|ZP_07109241.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300337643|emb|CBN54387.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 345

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 58/350 (16%), Positives = 124/350 (35%), Gaps = 23/350 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIG-----FTSWPIYSSFISKKEESST 60
           LN   ++R++++F    +   L  +F  V+    I        S+P+  S        S 
Sbjct: 13  LNNSTLVRFLLLFASGWAFLTLLAYFETVIVVFTIASLVAFLLSYPV-RSLKRFLPHGS- 70

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               +  +  + + +   + +    + + ++L+  +        P+   L          
Sbjct: 71  -AVTLVFLLSIIIVVSLSVTVGVTLLSQGQQLIDSITEFVNALAPLSDRLEGF------- 122

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                   + Q    + E  L+T  +  I    +          ++ IF+    FF   D
Sbjct: 123 ----LRERNLQVNLRVIEEQLRTQALGGIVSSITLL-QTVFTNVITFIFITAVSFFMLLD 177

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  + Q + +          ++ +R + +     F    I+ +           +  V  
Sbjct: 178 GERLWQLMLNFLPK---HLHRRFARTIERNFLGFFQAQIILMLFLVTASFIVLLILNVRF 234

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + L VI     +IPG       A+  ++++  N + A  + +   I   I D  + P +
Sbjct: 235 ALILAVILGAFDLIPGIGATLGIALVFFIVLAQNYWLAFKVLIACIILQQIQDNIIHPRI 294

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +   + L  +  FF L+ G R  GLLG+F+   L  +I   ++   M  +
Sbjct: 295 MKNSLNLNPVVVFFALLVGARAAGLLGIFLAIPLAGVIVSWFEIEEMKGE 344


>gi|172039635|ref|YP_001806136.1| hypothetical protein cce_4722 [Cyanothece sp. ATCC 51142]
 gi|171701089|gb|ACB54070.1| hypothetical protein cce_4722 [Cyanothece sp. ATCC 51142]
          Length = 365

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 60/346 (17%), Positives = 124/346 (35%), Gaps = 18/346 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF-----LKGFFAPVLSALIIGFTSWPIYSSFISKK 55
           M      PQ I+   ++ ++   L       + G  + +L+A +I F          +  
Sbjct: 1   MNSWFSRPQKILVTWLLILVTGWLTIKTLSYIGGLISLILTASLIAFLLNYPVRGLKTVL 60

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
               +  A +  +  + + I   + L    + + K+L++K+    + G      L  +  
Sbjct: 61  P--RSLAATLVYLGAIFIVIFLAITLLPPVVNQGKQLITKLPSLLEEGEQQLVTLQALIN 118

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
                   TK+L                     I        +   ++ + +I +I+  F
Sbjct: 119 --------TKNLPIDLEFLASQILTKIEAQTKDIASTGFGLVLGTFNWFIDLIVVIVVSF 170

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           +   DG  I + + +      P     ++  + K ++    G  I+ +   + L  A+ L
Sbjct: 171 YMLLDGEKIWKSIINF---FSPQIRGVLTTTLEKNLQRFLTGQLILGLFMAVSLTIAFRL 227

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
            G+P  +   V   IM ++P             +L   N + A  + +   I   + D  
Sbjct: 228 LGIPFFLLFAVFIGIMEILPFIGATLGIGTVTIILTFINWWLAVQVLVTAVIIQQVKDNL 287

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           + P ++G    LP +  F  L+ G +  GLLG+ +   L  +I  I
Sbjct: 288 IAPRIMGNLTGLPPVMIFIALLLGAKIGGLLGVILAIPLTGVIKGI 333


>gi|315032078|gb|EFT44010.1| conserved hypothetical protein [Enterococcus faecalis TX0017]
          Length = 366

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 56/344 (16%), Positives = 118/344 (34%), Gaps = 15/344 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKK---------EESSTFLAVIATVSVMCLFIVP 77
           L G  +P ++  +I +                      +       ++  + ++ +F++ 
Sbjct: 23  LLGILSPFITGFVIAYLLSGSQKKIEGLLERVPLPVVKKAKHGLSVLLLYLIILFIFVLT 82

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLKI 135
           L ++    +  + +L + +     H +     L D  I       +     L      + 
Sbjct: 83  LNYIVPLLISNLVDLANSLPTFYDHMVQFVMSLEDKGILKTAAIEKYLNSVLKDLSPERF 142

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           L++    T  +  +          FL+  L++I  I AL F       + +    L    
Sbjct: 143 LNQ---WTQALFSLGTLTKNVSSFFLNAFLTLIISIYALVFKQSILTFVEKAAHKLLSEK 199

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                +       K+         + A   G+    +  +  V   V LG++  I  MIP
Sbjct: 200 VYKQTQTWLNTTNKIFYKFISCQFLDACIIGVSSTISLSILNVKFAVTLGILLGICNMIP 259

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G+  +     +  L  G +  A  + L   I   I    + P ++G  + +  +    
Sbjct: 260 YFGSIFASIVAGVITLFTGGVTQAITVLLVLLILQQIDGNIIGPRIMGDALNVNPILIIV 319

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            +  G    G+LG+F+   + A+I +I  E +   KEN + + S
Sbjct: 320 SITIGGAYFGVLGMFLAVPVAAIIKIIVSEWLNESKENDKIVDS 363


>gi|124484941|ref|YP_001029557.1| hypothetical protein Mlab_0113 [Methanocorpusculum labreanum Z]
 gi|124362482|gb|ABN06290.1| protein of unknown function UPF0118 [Methanocorpusculum labreanum
           Z]
          Length = 346

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 63/340 (18%), Positives = 119/340 (35%), Gaps = 22/340 (6%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +++ I L  L     +    + AL +     P++   I +    + F A I T  V+ +
Sbjct: 14  ILVVLIFLAILVVSWNYIFLFILALSVAVVFLPLHRKMIKRIP--APFSAGILTTFVLAV 71

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            I   + +      +                    +   I   +  +     HL+     
Sbjct: 72  IIGICVGIVVVVSSDF------------------EYFMSIFQTIINTVTNMLHLTDGNDF 113

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            +     +K   +   P FA     +     + +I     ++     G  I   L S+  
Sbjct: 114 SLKIVDEVKNILLTMFPSFALSAAQMIPAVIIDMILFYSLVYLSIICGDRIWADLCSVIP 173

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                    +++    ++ S ++    IA     +  + + L G    +    + A+ A+
Sbjct: 174 AGSMDNVLLMAKKTKDILFSIYVVHVFIAFLTFFLAYAFFLLLGYGHEIFFSTMCALFAL 233

Query: 254 IPG-GAPISFTAVSIYLLIKGNIFNATCLFLWG-AIELFIVDKTLRPFLVGGPIKLPFLP 311
           IP  G  +    V IY L  G+I         G  +   + D  +RP L G  +K+  + 
Sbjct: 234 IPVLGPLMVIIFVGIYALCLGDIRGVILTATLGYFLTCVLTDLIIRPKLTGKRVKIRPML 293

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            F G  GG   MGLLG  +GPVL+ L    ++  I   ++
Sbjct: 294 MFVGFFGGAMAMGLLGFVLGPVLLILGLTAYEIFIKEGRK 333


>gi|253576668|ref|ZP_04853995.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251843878|gb|EES71899.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 364

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/330 (13%), Positives = 119/330 (36%), Gaps = 9/330 (2%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P+  +  + +   PI      KK            +S++ ++++    +  + ++   
Sbjct: 41  IVPLTISGFLYYLLRPIVQFLERKKLNR--------VLSILLIYLLFAGVITIFLIVVWP 92

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L  +++    +   +   L      +  +   +   +      +   T    + ++ I 
Sbjct: 93  PLRRQIIEFMNNVPKMINGLQTQFNDIRDNRYLSMVTNETSPELMSKVTEYLNSAMEAIS 152

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
            + S       D+ + +  + I L++  ++   ++  L  +    +      +   +  +
Sbjct: 153 GYLSHVVTFLNDFVIVVGTVPILLYYMLKEDERVTPLLVRMLPSRYRRDGASVIHEIDNM 212

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           ++    G  I A+    +    +WL G+P  + L V+ A+   IP    +      + + 
Sbjct: 213 LKGFIAGRMISAMLLAFMSFIGFWLIGLPYPLLLAVVGALFNFIPYFGALLGAIPCVIVA 272

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +      + +   +   I    + P++ G  I +  L T   L+      G+LG+ +
Sbjct: 273 FTVSPSMVFWVIVIVVVAQQIEGNLISPYIYGKTINIHPLTTIVLLLVAGDFGGILGMIL 332

Query: 331 G-PVLMALIAVIWKESIMAIKENKEKISSN 359
             PV M L  ++ K   +   E  E+++ +
Sbjct: 333 AIPVYMMLKIIVLKAHKLYFAEKIEELTES 362


>gi|167037464|ref|YP_001665042.1| hypothetical protein Teth39_1051 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115878|ref|YP_004186037.1| hypothetical protein Thebr_1078 [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856298|gb|ABY94706.1| protein of unknown function UPF0118 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928969|gb|ADV79654.1| protein of unknown function UPF0118 [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 341

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/349 (14%), Positives = 126/349 (36%), Gaps = 20/349 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFF----------APVLSALIIGFTSWPIYSSFISKKEESS 59
            I +  ++F+I+ +   L  F           +P   + +I +   P+      K   S 
Sbjct: 2   QIKKTYLLFLIIGATGLLYFFIKNWVSIKNILSPFFVSALIAYLLNPM-----VKFFNSK 56

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
            F   ++ + V  +    +LF  +Y +     L+++ +   Q        +  +   +  
Sbjct: 57  GFSIFLSILLVFLIVASGILFFSFYIV---PLLINEFIALLQMIPFYAEEIQKLLIQLKF 113

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           + L   +L       +        N   +    A +  +  L   + II + I  F+F +
Sbjct: 114 NYL--SYLPPQVEKVLDKNLGSLNNAFTYHIDSAFKSVITILKDAVDIIIIPIVTFYFLK 171

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D     ++++ +    +   +  I + + K++         I+    +       L  V 
Sbjct: 172 DKKVFKEEIERILPQKYSTKFFNILKKIDKILSKYLRAQIYISTFVAIFTMIGLSLIKVK 231

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               +GV+  I+ +IP   PI     ++ + +  ++       +   +   + +  + P 
Sbjct: 232 YAFLIGVLAGILNIIPYVGPILSIIPTVLIGLLDSLTKGFWALIICLLVQQVENAFITPK 291

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           ++   + L  +   F L+ G    G+ GL +   ++A+I  I  E  + 
Sbjct: 292 IMSDSVGLHPVTVIFSLIAGGELFGIWGLLLSVPIVAMIKAIVIEIFIE 340


>gi|330829202|ref|YP_004392154.1| Permease PerM [Aeromonas veronii B565]
 gi|328804338|gb|AEB49537.1| Permease PerM [Aeromonas veronii B565]
          Length = 356

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/342 (14%), Positives = 115/342 (33%), Gaps = 14/342 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +  ++++      ++      AP+L AL++ +   WP+    + K   S T    +
Sbjct: 15  DPDAVTLFLLLVFCFTIIWLFGDLLAPLLVALVMAYLLEWPVAR--LQKAGLSRTLATSV 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + + +  LL L    + +   L  +      H     R L D    +    L   
Sbjct: 73  ILILFIAVAVASLLGLIPTLVSQGINLAKEAPAMLTHAQDYVRTLPDKYPELIDVSLVET 132

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            + + +   +     L +  +  +           +   + +I + + +FF  +D   + 
Sbjct: 133 VIDNIRQRILSGGEHLVSASLSSLV--------NVVAIMIYLILVPLMVFFMLKDKRVLM 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L            +    +  ++I +   G  I  +  G+     + L G+   V L 
Sbjct: 185 GSLRRFLPRNRTLVNRVWVEMNNQII-NYIRGKVIEILIVGIATYVPFALMGLRYSVLLA 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGG 303
           V      +IP  GA +    V++  L +  +       +   + +  +D   L P L   
Sbjct: 244 VAVGFSVLIPYIGAAVVTVPVAMVALFQWGLTPEFAWLMVAYLVIQALDGNLLVPVLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            + L  +     ++      G  G+F    L  L+  +    
Sbjct: 304 AVNLHPVAIIIAVLVFGGLWGFWGVFFAIPLATLVKAVINAW 345


>gi|168334446|ref|ZP_02692621.1| hypothetical protein Epulo_05699 [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 385

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 62/342 (18%), Positives = 115/342 (33%), Gaps = 18/342 (5%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEE-----------SSTFLAVIATVSVMCLFIVPLL 79
             PV++  II +     Y+    K              + + +A++   +++ L +  L 
Sbjct: 40  LMPVITGFIIAYILKGPYNFVRDKVLRMSSKDTQTIQTTKSVIALVMAYTLVILVLTILA 99

Query: 80  FLFY-YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            L        ++ L+S +           +   D   G   + + ++  +  +   +   
Sbjct: 100 ILVIPQLWNSIQSLISTLPDQIDILFARFQGFLDDMDGRLDTSVDSEIYTQLEEAWVTVM 159

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY---RDGFSISQQLDSLGEHL 195
            F+     D IP   +    I       I   I +++F     R    +S+ L +     
Sbjct: 160 NFVSAILTDVIPAVLNGIVEITTSITNMIFAFIFSVYFLTGKERLSSQMSRILYAYLPKA 219

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                  ISRI      +   G    A   G++      +  +P  V + VI     +IP
Sbjct: 220 RAERILYISRITNNSFTNFINGQVAEAFILGILCFVGMLIFKMPYAVLVSVIIGATNIIP 279

Query: 256 -GGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
             G        +  +L+    N   A    ++  +   I    + P +VG  I LP +  
Sbjct: 280 IFGPIFGSIPATFIVLMDDPSNPMMAVWFVVFILVMQRIDGDIIYPRVVGDSIGLPGVFV 339

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
              +V G    GL G+ IG  L A+   + KE        KE
Sbjct: 340 MLAIVIGSGLWGLTGMIIGVPLAAVFYRLIKEGTNLRLAEKE 381


>gi|90581674|ref|ZP_01237463.1| putative permease PerM [Vibrio angustum S14]
 gi|90437158|gb|EAS62360.1| putative permease PerM [Vibrio angustum S14]
          Length = 361

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/339 (15%), Positives = 118/339 (34%), Gaps = 14/339 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +   +I+    +++YF      P+L A+++ +   WP+    ++K     T    I
Sbjct: 15  DPHAVSLVVILLGGFLTIYFFGSLITPLLVAIVLAYLLEWPVAR--LNKLGMPRTLSVAI 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +    L ++ L  L      ++  L + V         +  ++S +P          +
Sbjct: 73  VLLVFAGLMVLALFGLVPTIWHQITNLSADVPKMFN---DLQIYVSSLPERYPDFVQPAQ 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            +    +L+       ++     +    S          + +I + + +FF  +D   + 
Sbjct: 130 VVDLMNTLREKVLGLGESVVKGSLASLVS-----LATIGVYLILVPLLVFFLLKDKDEML 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + L ++          K+   + + I +   G     I  G+     + +  +   V LG
Sbjct: 185 RTLLNVLPK-NRRLASKVGSEMNQQISNYIRGKVTEIIIVGIASYVTFEVMDLRYAVLLG 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTLRPFLVGG 303
           V+  +  +IP  GA      V++  L +         L L   I   +    L P L   
Sbjct: 244 VLVGLSVLIPYIGAAAVTVPVAMVGLFQWGWTPDFWWLLLAYGIIQMLDGNVLVPILFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            + L  +     ++      G  G+F    L  L+  +W
Sbjct: 304 AVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVW 342


>gi|322378404|ref|ZP_08052858.1| membrane protein [Helicobacter suis HS1]
 gi|322380085|ref|ZP_08054341.1| aminoacylase [Helicobacter suis HS5]
 gi|321147492|gb|EFX42136.1| aminoacylase [Helicobacter suis HS5]
 gi|321149160|gb|EFX43606.1| membrane protein [Helicobacter suis HS1]
          Length = 351

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 67/366 (18%), Positives = 140/366 (38%), Gaps = 29/366 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           + P      +        LY  + F   +L A ++  T + +   F       + F +++
Sbjct: 1   MRPVYFFWLLFGIAFYWMLYLYEDFLMDLLIAGLLCVTVFWLKEFFDKHM--RNLFSSLL 58

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEM--KELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
             + ++   ++PL FL Y  M  +    L       N+    +  ++ D P         
Sbjct: 59  CVLVLLSCLVIPLYFLIYKSMDFVFHLNLERLSFFINKFKTDLLMYVQDFP--------- 109

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
               +  Q    +         + +I  F+S  G   L +    + +++ LF  +  G +
Sbjct: 110 ----TLSQYAHKILSNVSAQALMSYILHFSSDIGKYSLKFASDTVMVLVFLFLCFFYGQT 165

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
               +  +         K I R V  ++R   L   I  + +G+          +   ++
Sbjct: 166 FYSYILEVLP-FEKIQSKGIFREVAGILRVVLLTSIINVVLQGVAFAGLVVWFKLDW-LS 223

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLV 301
           LGV+  + A+IP  G  + +  V+ Y + +GNI  A  + L+  I +  ++D  ++P+L+
Sbjct: 224 LGVLYGLSALIPIVGGALVWIPVAFYEMYRGNITGAVVIALYSLILIGGLIDSLIKPWLI 283

Query: 302 GG--------PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G          +K+  +  FF ++ G+   G  G+ +GP + A   V+ +          
Sbjct: 284 GFIKRRVLKISLKINEILIFFSILAGISKFGFWGIAVGPTITAFFIVLLRVYEKVFTSTA 343

Query: 354 EKISSN 359
            K+ S 
Sbjct: 344 RKMPSQ 349


>gi|323248844|gb|EGA32770.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
          Length = 338

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/332 (14%), Positives = 111/332 (33%), Gaps = 14/332 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +P+ I   +I+      L+F  G  AP+L A+++ +   WP  +   +       
Sbjct: 10  RRRFSDPEAIALLVILVAGFSILFFFSGLLAPLLVAIVLAYLLEWP-TARLQAIGCSRRW 68

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             +++  + V  L ++  + +       +  +     + N+            P  M A 
Sbjct: 69  AASIVLILFVGILLLMAFVVMPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +     +    +  + ++ +K +    +           L   + ++ + + +FF  +D
Sbjct: 129 IIDAMAENMRTRMLNMGDSVVKYSLASLV---------GLLTLAVYLVLVPLMVFFLVKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +          ++   + + I +   G  +  +  G+     + L G+  
Sbjct: 180 KEQMLNAVRRVLPRNRGLAG-QVWNEMNQQITNYIRGKVLEMVVVGVATWLGFLLFGLNY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V+     +IP  GA +    V  + L   G        F    I   +    L P
Sbjct: 239 SLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGLGTEFWSCFAVYLIIQALDGNLLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            L    + L  L     +V      G  G+F 
Sbjct: 299 VLFSEAVNLHPLVIILSVVIFGGLWGFWGVFF 330


>gi|268326230|emb|CBH39818.1| conserved hypothetical membrane protein, DUF20 family [uncultured
           archaeon]
          Length = 354

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 132/358 (36%), Gaps = 35/358 (9%)

Query: 14  WMIMFIILVSL--YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           W+I+ +I ++L  Y L  F   ++  + + + + P+Y  F+ + +              +
Sbjct: 10  WLILGLISIALLVYVLFRFCDVIIYGIFLYYVARPVYRGFVKRYKYERVGA-----FISL 64

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              ++PL+ +  Y +      +               ++ +I   +   +     ++   
Sbjct: 65  FFIVLPLVLIGIYTL--STAYIELSKFLGHIDFGYTNYVDEI---VKRIKEIASSINMAD 119

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              ++++    +  I  +  F+      + D+ L +    +  ++  +DG  +   +   
Sbjct: 120 ISNLITQGDKWSVYITHLSAFSGTM-SGYFDFPLKLFLTFVIAYYLLKDGAKLMAWITDT 178

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--------VPSHVA 243
                    KK    V   +   + G  + AI   LV    ++L          +P  + 
Sbjct: 179 FLGGKTELAKKFFDDVDSALYQVYFGNILTAILTALVAVVTFYLLNLIAPPQLLIPYPIL 238

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV---------- 292
            G++  I   IP  G  + +  ++ YL ++    N   L  W  I LFIV          
Sbjct: 239 FGILCGIGIFIPIVGVKLIWVPLTFYLGVQ-AYLNGILLTSWWFILLFIVVMFLVVDSVP 297

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +  LRP++      +         + GV   G LGLF+GP+++ + A   K  +  ++
Sbjct: 298 EYALRPYISKKY--VHVGALLLAYIFGVCIFGFLGLFLGPMILIIAASFMKIVLPELR 353


>gi|306820468|ref|ZP_07454104.1| possible permease [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304551543|gb|EFM39498.1| possible permease [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 360

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/323 (14%), Positives = 107/323 (33%), Gaps = 14/323 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT-------VSVMCLFIVPLLFLFY 83
             P    +   +   P+      K ++ +  L+++         ++V  LF++P++    
Sbjct: 32  LTPFFWGIGFAYILNPLMIFIEKKSKKKNRVLSLLLVYAIFFGILTVFSLFVIPVITQNI 91

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             + E      K +      IP    L  I G     E  + +++               
Sbjct: 92  KDLYEKSSTFPKTIYEYIEKIPNKELLLGISGIEQLLEENSSNITKWLLNF-------SN 144

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             +  I   A  F    L++ L +   I  L+   +    + + + +  +          
Sbjct: 145 GTLSSIVGTAFSFTSKLLNFVLGLFVSIYFLYEKEKLIDYMKKVIRAFAKKKKADLIIDY 204

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
              V     +  +G  I +   G++      +  +   + L +I  ++ MIP   P    
Sbjct: 205 FSKVNSYFYNFLVGKLIDSTIIGILCFIGMSVLKLRYALLLSIIVGVLNMIPYFGPFMGA 264

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             S+ + +  +   A    L+  +        L P ++G  +    L   F ++ G    
Sbjct: 265 VPSVIITLIYSPIQALWAALFILVLQQFDGWYLGPKILGDTVGAKPLFIIFSILVGGSFA 324

Query: 324 GLLGLFIGPVLMALIAVIWKESI 346
           G LG+ +   L   + ++W   +
Sbjct: 325 GPLGMLLAVPLFKSLFMLWDTFL 347


>gi|228999177|ref|ZP_04158759.1| hypothetical protein bmyco0003_37340 [Bacillus mycoides Rock3-17]
 gi|228760794|gb|EEM09758.1| hypothetical protein bmyco0003_37340 [Bacillus mycoides Rock3-17]
          Length = 358

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 115/318 (36%), Gaps = 11/318 (3%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           ++  K    P L A  I +   P+      +            T++++ ++I+    L Y
Sbjct: 42  IFVFKVAITPFLIACFIAYLLHPLIEKLYKEGMPR--------TLAILLIYILFFGGLGY 93

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                   +++++   N+     P+++      M      T +       K+        
Sbjct: 94  GIYKGTPVVIAQLQEINK---QFPQFMKMYDSWMDGVTEQTDNFPSFIHEKVKQIFVGIE 150

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             I  +           LD  L I  +   +F+  +D               + +  + +
Sbjct: 151 MKIQALLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHVFWKFVPSKWRSTGQVL 210

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
           ++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI   
Sbjct: 211 AKEIDKSLGSYIRGQLFVCLVLGGVSALSFWFIGMKYPLLLGIIVGVTDIIPYFGPILGA 270

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G    
Sbjct: 271 IPTLMIAATVSTNLFIKAGIALAILQFVESNILSPYIVGKSLRMHPVIIMLALLIGGEIG 330

Query: 324 GLLGLFIGPVLMALIAVI 341
           G++GL I   ++A+I  +
Sbjct: 331 GIVGLLIAVPILAVIRTV 348


>gi|266623643|ref|ZP_06116578.1| putative membrane protein [Clostridium hathewayi DSM 13479]
 gi|288864557|gb|EFC96855.1| putative membrane protein [Clostridium hathewayi DSM 13479]
          Length = 386

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/341 (14%), Positives = 109/341 (31%), Gaps = 15/341 (4%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L GF +P L   ++ F                            + L    L  +    
Sbjct: 37  MLFGFISPFLLGGVMAFILNVPMRRIEKMLPMKENSR----LRRPIGLVFTLLFVVGLLL 92

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           ++    +             +P +L+ +  G          +    +   +       + 
Sbjct: 93  LVIFVVMPQLFETFMSLQNSIPVFLAGVKKGAEDLFAQNPEILDYINGIQIDWKSFSEDV 152

Query: 146 IDFIPRFASRFGMIFLDYCLS-------IIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
           I F+   AS      +   +S           ++   +      ++S Q+  L     P 
Sbjct: 153 IGFLSSGASTVLNSTITAAVSIVSGVTTFGIALVFAIYILLQKETLSAQMKKLMRAFLPD 212

Query: 199 YWKKISRIVPKVIRSTF----LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
              +    V  +  +TF     G  + A+  G +      +  +P  + +GV+ A  A+I
Sbjct: 213 RVTEHVLSVAGLAYNTFSHFLTGQCLEAVILGTMFFLTLSVLRLPYALLIGVLIAFTALI 272

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P         +  +L++     +A        I   I    + P +VG  + LP +    
Sbjct: 273 PIFGAFIGCVIGAFLMLMVKPLDALLFVAVFFILQQIEGNLIYPHVVGNSVGLPSIWVLV 332

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            +  G   MG++G+ I   L +++  + + ++ A  E K +
Sbjct: 333 AVTIGGSAMGIVGMLIFIPLCSVLYSLLRGTVYARLEKKNQ 373


>gi|313885294|ref|ZP_07819045.1| putative membrane protein [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619400|gb|EFR30838.1| putative membrane protein [Eremococcus coleocola ACS-139-V-Col8]
          Length = 377

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 60/358 (16%), Positives = 121/358 (33%), Gaps = 21/358 (5%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPI---------YSSFISKKEESSTFLA 63
             +I+     +L  LK  F   + A I+      I                +   S FLA
Sbjct: 28  HQVILAFFRTALSVLKPIFIGGVLAFILNIIMKQIEKIYFTESDAKWVKKTRRPVSLFLA 87

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           +I  + V+   +  ++      +LE+   + K+V   Q  I         P    A+E +
Sbjct: 88  IITVLLVLVFVLNLVIPQLVSVVLEIVNAIPKLVNQVQSFIVDHE--DFFPPLAQAAENF 145

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                  Q++      FL     + I    +      L   ++ I  ++   +       
Sbjct: 146 -----DIQNITGRLVGFLNNLSQNLIGGTLATI-TTTLSGIVNGILALMLAIYILLSKEK 199

Query: 184 ISQQLDSLGEHLFPAYW----KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           +++Q   LG+   PA W      +  +  +       G  I A+  G ++     +   P
Sbjct: 200 LAEQFKRLGQAYLPATWCRRLHYVLDVANRSFTGFIGGQLIEALIIGSLVSIGMMIFRFP 259

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               +G +T + A+IP         V   L+   +        ++  +   I    + P 
Sbjct: 260 YPSMIGALTGVTAVIPVLGAYISGIVGFLLISVQSPLQGLAFLVFIIVLQQIEGNIIYPK 319

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           +VGG + LP L     +  G    G++G+     + + +  + K  +   +   + I 
Sbjct: 320 VVGGKLGLPALWILVAVTVGGGLFGIVGMLFAVPITSTLYTLIKNDVAYREAQMQPIK 377


>gi|319649707|ref|ZP_08003863.1| hypothetical protein HMPREF1013_00467 [Bacillus sp. 2_A_57_CT2]
 gi|317398869|gb|EFV79551.1| hypothetical protein HMPREF1013_00467 [Bacillus sp. 2_A_57_CT2]
          Length = 352

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 59/322 (18%), Positives = 119/322 (36%), Gaps = 10/322 (3%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
              YF+     P++ A I      P+     +K + +     +I  +  +    +   F+
Sbjct: 21  AVFYFILPVSVPLIVAFITALILEPVVKLLQNKIKINRRVSVLITFLGFVLFIGLSGYFI 80

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E  +LV    +          WL        A++   K L     +    ++FL
Sbjct: 81  TTKVITEAIKLVENAPMYINEIT--KAWLRAEADFSNAAKDLPKDLVD--EISNQIQSFL 136

Query: 142 KTNGIDFIP----RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
                D +                +Y +S I  +IALF F  D   + + L +       
Sbjct: 137 NKTKNDLVAYVNIDSLKALLTNIPNYLVSFIVYLIALFLFLIDLPRLRKGLYNHLTEKTA 196

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV-ALGVITAIMAMIPG 256
              K ++  +  V    F    ++++   +V             +    +I  I  +   
Sbjct: 197 DKVKFMTSRLSYVGFGFFKAQFLVSVIIFIVSLIGLLFINPEMALIMSIIIWIIDFIPII 256

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           G+ +     +++ L+ G++   T L +  A+ L I+ +T+ P ++G  I L  L T   +
Sbjct: 257 GSIVILGPWALFHLLTGDLAMGTQLAILAAVLL-IIRRTVEPKVMGTHIGLSPLATLIAM 315

Query: 317 VGGVRTMGLLGLFIGPVLMALI 338
             G++ +G+LG  IGP+L+   
Sbjct: 316 YLGLKLIGILGFIIGPLLVIAF 337


>gi|317124038|ref|YP_004098150.1| hypothetical protein Intca_0896 [Intrasporangium calvum DSM 43043]
 gi|315588126|gb|ADU47423.1| protein of unknown function UPF0118 [Intrasporangium calvum DSM
           43043]
          Length = 379

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 97/297 (32%), Gaps = 17/297 (5%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           PI               A    + V+ +       +       + EL ++V    +    
Sbjct: 69  PISRRLARAMP--VGLAAGTTVLGVILIVSALFTLIGQQFSSGLSELTAEVATGLE---Q 123

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           +  WL             T  ++  +  +         +    + + A+  G+    +  
Sbjct: 124 IRDWLRT-----------TFSITDSEFDRYFENLREGVSNSGNLGQTAADVGLTATHFIA 172

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
            +   + ALFFF  DG  I   +  L   +         RI    + +      I+A+ +
Sbjct: 173 GMFIALFALFFFLYDGPRIWAWIVRLFPRVSRPRVDSSGRIAWDQLSAFVRATIIVALVD 232

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLW 284
            + +     +  VP   A+GV+  + A IP    +   AV++ L L+      A  +   
Sbjct: 233 AVGIALGATVLKVPFAFAIGVLVFLFAFIPIVGALLSGAVAVILALVSHGFGVALIMLAV 292

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                 +    L+P L+G  + +  L     +  G    G++G        A++  +
Sbjct: 293 VIAVQQLESHVLQPVLLGHAVSIHPLAVILAIAAGSTVAGIVGALAAVPFAAVLNAV 349


>gi|301114839|ref|XP_002999189.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262111283|gb|EEY69335.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 922

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 78/211 (36%), Gaps = 10/211 (4%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK---ISR 205
           +        + F+   +   F I +LF+      +    ++   E L P    K   + R
Sbjct: 324 LVFLVFTLVIAFVSLGIRSFFFISSLFYLLC---TNWDPIERFVEDLLPIQIDKRPDVVR 380

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTA 264
            + KVI   F     +A    +V   ++ +           +T  ++++P   P +    
Sbjct: 381 SLRKVIEGVFFLPLKMASIHAIVTMVSFTIVNADFMYLATTVTFFISIVPIIPPYLVCVP 440

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             I + +  +I  A  LF    +   ++D+ L        + L    +   +V GV   G
Sbjct: 441 WVISIGLTSSIIKALALFAVQYVAFTVLDEMLY---EKSIVALNAYVSALSVVFGVYVFG 497

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             G+  GP+++  +   +  S   I+  +++
Sbjct: 498 FEGVIFGPLIVCGVTFAYDVSNHGIQAAQDE 528


>gi|77405853|ref|ZP_00782936.1| membrane protein, putative [Streptococcus agalactiae H36B]
 gi|77175563|gb|EAO78349.1| membrane protein, putative [Streptococcus agalactiae H36B]
          Length = 377

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 61/334 (18%), Positives = 122/334 (36%), Gaps = 19/334 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI----ATVSVMCLFIVPLLFLF 82
           +  F      A II      +Y     K  + S  L  I    + +     FI  +++LF
Sbjct: 39  IFPFLMGAGIAYIINIVMS-VYERLYIKLFKGSRLLMAIKRSVSMILSYATFIGLIVWLF 97

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ---SLKILSET 139
              + ++   +S +++ +   +   + ++++      SE      +      +L   S+ 
Sbjct: 98  SIVIPDLISSLSSLLVIDTGALA--KLVNNLNENKQISEALNYMGTDKDLVSTLSGYSQQ 155

Query: 140 FLKTNGIDF--IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            LK        +    S      L+  +S IF I  L     +   + +Q + L +    
Sbjct: 156 ILKQVLSVLTNLLTSVSSIAATLLNVFVSFIFSIYVL----ANKEQLGRQFNLLIDTYLG 211

Query: 198 AYWKKI---SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           +  K       I+ +     F+  T+ A+  G +      +   P  + +GV+ A  A+I
Sbjct: 212 STGKTFHYVRHILHQRFHGFFVSQTLEAMILGSLTVIGMLIFQFPYALTVGVLVAFTALI 271

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P         +   L+   ++  A    L+  +        + P +VGG I LP +    
Sbjct: 272 PVVGAYIGVTIGFILIATESLTEAFLFVLFLILLQQFEGNVIYPKVVGGSIGLPSMWVLT 331

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            +  G    G+LG+ +   + A I  I K+ I+ 
Sbjct: 332 AITIGGALWGILGMLLAVPVAATIYQIVKDHIIK 365


>gi|186686551|ref|YP_001869747.1| hypothetical protein Npun_F6544 [Nostoc punctiforme PCC 73102]
 gi|186469003|gb|ACC84804.1| protein of unknown function UPF0118 [Nostoc punctiforme PCC 73102]
          Length = 354

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/338 (13%), Positives = 113/338 (33%), Gaps = 19/338 (5%)

Query: 16  IMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           +  ++  +LY L         ++ A +I      +   F+ K  +S     ++    ++ 
Sbjct: 20  LAVMLAAALYILYQLLPVLELLVIAALIALILRTLL-RFLQKLVKSQDVAVLLLIGLIIG 78

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
             +V    +      E ++L+            +P +L+ + G +         +     
Sbjct: 79  FVVVLATVVVPSVTFESQKLIK----------TLPTYLNRLTGDVEQLRQKFTFIPDISQ 128

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             I        N  D +      F    L+  + ++  +I   +   D  S+ + +  L 
Sbjct: 129 ALIQLR-----NLTDHLLGGVPVFLGEALNLTIELVATLILALYMAYDPNSLVKGILRLV 183

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                  +K+I +     +R    G  I  I  G        + G+PS +  G+I  +  
Sbjct: 184 PRRHHQRFKRILKACETRLRGWIFGTGIAMIFLGAGATFGLLILGIPSALPFGIIAGLFE 243

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +IP    +    +   + +  +      + +   +   I    ++P ++G  + +  +  
Sbjct: 244 IIPYFGSVIGAFLPALVALSISPLKLVFVLILFFVMNQIDAHVVQPLVMGQQVNIHPVMV 303

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
               +   +  G +G+ +     A+I  +  E     K
Sbjct: 304 IVTFLVMGKLFGFIGVLLAVPAAAVIITLIDEFTPEEK 341


>gi|157826034|ref|YP_001493754.1| hypothetical protein A1C_04960 [Rickettsia akari str. Hartford]
 gi|157799992|gb|ABV75246.1| hypothetical protein A1C_04960 [Rickettsia akari str. Hartford]
          Length = 351

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 56/350 (16%), Positives = 120/350 (34%), Gaps = 7/350 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N   I   + + + +     +     P   A II +   P      SK + S+ F + I
Sbjct: 1   MNITAIFWLVFLGLFISGFMLISDAVKPFFIAFIISYLLQPAIGLIASKFKISNKFASSI 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + +F + L  L      ++   ++ +     +          +P  M    L   
Sbjct: 61  IYLIFLSMFFLSLTILVPIIYGQIFTFINNIPKYKNYLQAEI-----LPPIMAKIYLIEP 115

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            ++      + +        +  I     R+ +I ++  +  + + I LF+F RD   I 
Sbjct: 116 DIADKIKNSLTNFINSIFTILGSIANNFWRYTIITINIFVLFLLIPIILFYFLRDWAKII 175

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             + SL          +I   +  ++ +   G   I +        A+ + G+   + LG
Sbjct: 176 TNMKSLLPIKTRPKILEILSAINNLLSAYIRGQLNICLLLSTYYSIAFTIIGIDLAILLG 235

Query: 246 VITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           ++T  + +IP           + I  L  G       + +   +        L P ++G 
Sbjct: 236 IVTGFLVIIPFLGTFISFLLTLIISYLTFGINTKLLYIMIIYLVGNICESYILTPKIIGD 295

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            I L  L   F +       G++G+F    +  +  ++    I   K +K
Sbjct: 296 KIGLHPLWIIFSIFACGSLFGIIGIFFAIPIAGITKILLLNLIKFYKSSK 345


>gi|297156749|gb|ADI06461.1| hypothetical protein SBI_03340 [Streptomyces bingchenggensis BCW-1]
          Length = 403

 Score = 78.3 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 117/348 (33%), Gaps = 22/348 (6%)

Query: 8   PQGIMRWMIMFIILVSLYFLK--------GFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           P+ + R M++ + LV+ Y L         G    +L A  +     P      ++     
Sbjct: 34  PRWLPRAMVLALALVACYRLATWAFDQLTGLLLNILIAFFLALAIEPAVDRMAAR-GVRR 92

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
                +  + ++         L      ++  +V       ++   +  W+++     + 
Sbjct: 93  GVATGLVFLGILIGVAGFFTLLGSMLADQIMTMVEDFP---KYLDQLVIWVNE----TFH 145

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           +EL    +          +++++ +  + +   A   G +F    +++       F+F  
Sbjct: 146 TELSRVEIQDSVLHSDWLQSYVRNSANNVLDVSAQVLGGLFRVLTVTLF-----AFYFAA 200

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  + + L S+      A   +   I             ++A+  G+         GVP
Sbjct: 201 DGPRLRRALCSVLPPTRQAEVLRAWEIAVAKTGGYIYSRGLMALISGVAHYVLLEWLGVP 260

Query: 240 SHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              AL V   +++  IP        A+ + +      + A  + ++  I     +  L+P
Sbjct: 261 YAPALAVWVGLISQFIPTIGTYLAGALPMLIAFTVEPWYALWVLVFVVIYQQFENYLLQP 320

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            +    + +    +F  ++ G   +G +G  I     A +       I
Sbjct: 321 RITARTVDIHPAVSFGSVIAGTALLGAVGALIAIPATATLQAFLGAYI 368


>gi|253997588|ref|YP_003049652.1| hypothetical protein Mmol_2223 [Methylotenera mobilis JLW8]
 gi|253984267|gb|ACT49125.1| protein of unknown function UPF0118 [Methylotenera mobilis JLW8]
          Length = 360

 Score = 78.3 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 133/358 (37%), Gaps = 20/358 (5%)

Query: 6   LNPQGIMRWMIMFIILVSL-YFLKGFFAPVLSALIIGFTSWPIYSSFIS----------K 54
           +N      W++  + +V + Y L     P L A I+ + + P+ +   +           
Sbjct: 1   MNKHTNTAWLVAVLSVVGIIYLLGPILTPFLIAAILAYIANPLVNKIEAIQCNSIAKKLS 60

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDI 113
            + S T   V+  V +  +  + LL +      E  +L  K+    N     +  WL   
Sbjct: 61  FKPSRTIATVLVLVLLFAVLTIILLIMIPLLQHEFVQLSQKIPAYLNTAKTSLEPWLQKN 120

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
            G        T+         +        N    I    S  GM  + +  +++ + + 
Sbjct: 121 FGIS------TEIDPTQIQAILTENWKTTGNFAKNIALSLSSHGMTIIGWLGNVVLIPLV 174

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           LF+   D   + Q++ +L         ++I+  +  V+     G   + +   +   +  
Sbjct: 175 LFYLLVDWNILLQKISTLLPRSLIGKTQEIAADIDAVLAEFLRGQLTVMLLMSVFYATGL 234

Query: 234 WLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
           WL G+   + +G+++ ++  IP  G       A    +L  GN+ +   + +   I   +
Sbjct: 235 WLVGLEFALPIGILSGLLGFIPYLGFGLGLTLAAISGVLQYGNLNDLIPVLIVFGIGQLV 294

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
               L P+LVG  I L  L   F L+ G +  G  G+ +   + A IAV ++ +    
Sbjct: 295 ESMALTPWLVGDRIGLHPLVVIFALMAGGQLFGFAGILLALPVSAAIAVGFRHAKQKY 352


>gi|95928937|ref|ZP_01311682.1| protein of unknown function UPF0118 [Desulfuromonas acetoxidans DSM
           684]
 gi|95134838|gb|EAT16492.1| protein of unknown function UPF0118 [Desulfuromonas acetoxidans DSM
           684]
          Length = 370

 Score = 78.3 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 64/320 (20%), Positives = 116/320 (36%), Gaps = 20/320 (6%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P+L +LI  F   P+ ++   +    +  +  +  +    L ++   +L  Y      
Sbjct: 44  FVPLLLSLIAAFLLDPLVNAMEKRHIPRTRAIFSVFFMISATLLLL-GSWLIPYTQNMWD 102

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L+S         I   R          A   W      P   +      ++T     + 
Sbjct: 103 SLLSDFPRYTSQLITYLR---------EAQASWQSRF--PFLEQYDLTQTVRTTAEQVLS 151

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
               +     L     +I + I  FFF RDG +I + L SL  + +      +S +V + 
Sbjct: 152 FILVQTPKSALKLGSLMILVPIFSFFFLRDGTTIMRGLTSLAPNRYFEMAHDLSFLVSRQ 211

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS-----FTAV 265
           +     G  I A   G+V+ +   L  +     LG+   I  +IP   PI          
Sbjct: 212 MAHFVRGRIIEAAIIGIVVATGLSLTDIRYAPLLGLFAGITNLIPYIGPIVGMIPGILIA 271

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKT-LRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           ++ L + G  +    + L+  I   I+D   L P L+     L  +     +V G +  G
Sbjct: 272 AVDLGLGGQFWW--IVILYILIAQVILDNFILIPILISRVANLHPVLVILAIVMGGKLYG 329

Query: 325 LLGLFIGPVLMALIAVIWKE 344
           +LG+ IG  + +   + + E
Sbjct: 330 VLGMIIGVPIASAFKIAFIE 349


>gi|325579227|ref|ZP_08149183.1| PerM family permease [Haemophilus parainfluenzae ATCC 33392]
 gi|325159462|gb|EGC71596.1| PerM family permease [Haemophilus parainfluenzae ATCC 33392]
          Length = 348

 Score = 78.3 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/341 (14%), Positives = 114/341 (33%), Gaps = 11/341 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             + +PQ +    I+    +++YF     AP+L A+++ +      +    K +      
Sbjct: 11  RRLSDPQAMGLLAILLFGFIAIYFFSDLIAPLLIAIVLAYLLEMPINFLTKKLKFPRMLA 70

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            +I     + L ++    L      +   L+S +         +  WL  +P        
Sbjct: 71  TLIIFGGFLTLALLIFFGLVPTLWNQTISLLSDLPAMFNK---LHEWLLALPEHYPELID 127

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           +T   +   + +     F ++     I        M  +   +    + + +FF  +D  
Sbjct: 128 YTMIDTFFSAARAKILGFGESAVKLSITSL-----MNLVSLGIYAFLVPLMMFFMLKDKT 182

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +   +             K+   + + I +   G  +  +  G+V    +   G+   +
Sbjct: 183 ELLAGVSRFLPK-NRLLASKVWNEMQQQIANYIHGKLLEILIVGVVTYIIFLSFGLNYPL 241

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFL 300
            L V   +  ++P  GA +    V++  + +  I       +       ++D   L P+L
Sbjct: 242 LLSVAVGLSVLVPYIGAVLVTIPVALVAMFQFGISPTFWYLIVAFAVSQLLDGNLLVPYL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
               + L  L     ++      G  G+F    L  L+  +
Sbjct: 302 FSEVVNLHPLVIIISVLIFGGLWGFWGVFFAIPLATLVKAV 342


>gi|325270826|ref|ZP_08137416.1| permease [Prevotella multiformis DSM 16608]
 gi|324986837|gb|EGC18830.1| permease [Prevotella multiformis DSM 16608]
          Length = 355

 Score = 78.3 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 127/360 (35%), Gaps = 14/360 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           M +T+   + I   +I   IL   +    L G   P   A ++ +  +PI      +   
Sbjct: 1   MAQTITFDKFIRWALIALAILAVGFIINALSGVLLPFFVAWLLAYLLYPIVKFVQYRLHV 60

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
               L+++ T+  +   I  +       M+   + +  V     H       LS I    
Sbjct: 61  PGRALSILVTLLFVAAVITAIFLFIVPPMIGQIDRLMHVANRYMHETTHTDSLSAI---- 116

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
               +    +   + LK    T      +  +     +   I L    S I ++  +FF 
Sbjct: 117 VQRWVMENQIEIERYLKSPDFTNTLKTAMPKLFSVIGQTASIVLSIIASCITLLY-MFFI 175

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             D  +++++   +       +W  +++ V + + +   G  ++++  G++    + +  
Sbjct: 176 LLDYETLTEKWIKIFPRNVRPFWAGLAQDVERELNNYIRGQGLVSLCLGILFCIGFTIID 235

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI----KGNIFNATC--LFLWGAIELFI 291
            P  + +G++  I+ ++P     +        L+     G  F           A+   +
Sbjct: 236 FPMAIGMGILVGILNLVPYLHTFALIPTVFLALLKAADTGQNFWIIFGSALAVFAVVQVL 295

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           +D  + P ++G  + L        L      +G +GL I   L  LI   W+  +   ++
Sbjct: 296 MDMVITPKIMGKAMGLNPAILLLSLSVWGALLGFIGLIIALPLTTLIIAYWQRYVTKEEQ 355


>gi|220908232|ref|YP_002483543.1| hypothetical protein Cyan7425_2839 [Cyanothece sp. PCC 7425]
 gi|219864843|gb|ACL45182.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7425]
          Length = 363

 Score = 78.3 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/316 (17%), Positives = 117/316 (37%), Gaps = 21/316 (6%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
             FA +++A ++ F      S   ++  + +    ++  +++  L  + +  +       
Sbjct: 47  PLFAVIITASLLAFLLNYPVSWIEAQGGKRAPASVIVFLLAITILIGLGVTLVPVALAQ- 105

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK------ 142
                     A Q  + +P WL      + A   W + +  P  +  +    L       
Sbjct: 106 ----------AQQLAVRLPEWLEKGRQQIVALSQWAEAMGFPLDIDAIGTQLLDRLRDQL 155

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                     A       LD  ++II  II  F+  ++G  + + L           + +
Sbjct: 156 QALTQGALNLAVGTVSSVLDALVNIILTIILTFYLLQNGDELWRSLIEWLPVKIQQPFSQ 215

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             R+     ++ FLG  I++    + L   Y L  VP  +   +   ++ + P G  +  
Sbjct: 216 TIRL---SFQNYFLGQLILSTCIAIGLVPTYLLLKVPFGLLFSLAIGLLTLFPFGGTVGN 272

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             V + + ++ +I+      + G I   I +  + P ++G    L  +  F  ++ G + 
Sbjct: 273 ILVGLLVGLQ-DIWLGLRAVIAGIIVQHIFENFVAPRVIGSVTGLNPVWVFLAILAGAKI 331

Query: 323 MGLLGLFIGPVLMALI 338
            GLLG+ I   + A+I
Sbjct: 332 SGLLGVVIAVPMAAVI 347


>gi|257454111|ref|ZP_05619385.1| permease [Enhydrobacter aerosaccus SK60]
 gi|257448589|gb|EEV23558.1| permease [Enhydrobacter aerosaccus SK60]
          Length = 408

 Score = 78.3 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 58/349 (16%), Positives = 131/349 (37%), Gaps = 7/349 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   + +  I   +Y L+    P L A I+ +   P+      K         ++  +
Sbjct: 16  KRLFISLFLVAIGYIIYQLQSVILPFLVAFILSYAINPLVQKLQDKAHIRRWVAILLVYL 75

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMWASELWTKHL 127
           S   +  + L +L      +++     V  A  +     R W+                 
Sbjct: 76  STGLMIGLILWWLIPLVWEQLQSAWKYVPTAIDYYNNTLRGWVRS--HTPIRLPAMQVRD 133

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                +  L E +  T+   F        GM  ++    ++ + I +F+F  +      +
Sbjct: 134 MSKGLVDFLKENYNITDARSFFTNLMLS-GMNIINVAGIVVLVPILMFYFLYNWDERLVK 192

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  +  + +     +I++   + + S   G  ++ +  G+V      L G+   + +G++
Sbjct: 193 MRHMIPNRYIPSVYRIAKESDEALMSFIKGQLLVMVLLGMVYAVQLQLIGLKVGLIIGMM 252

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--DKTLRPFLVGGP 304
             I + +P  G  + F A  I  L +  +     + + GA  +        L+P L+G  
Sbjct: 253 AGIASFVPYLGFTLGFIAAIIAGLFQFGVDWVHLVLIVGAFMVGQAVEGYVLQPLLLGDK 312

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           I L  L   F ++ G    G+ G+ I   L A++ V+++ +  + +E +
Sbjct: 313 IGLSPLWVIFAVLAGAALAGIAGMLIALPLAAVLNVLFQHAYDSYRETE 361


>gi|302335232|ref|YP_003800439.1| protein of unknown function UPF0118 [Olsenella uli DSM 7084]
 gi|301319072|gb|ADK67559.1| protein of unknown function UPF0118 [Olsenella uli DSM 7084]
          Length = 435

 Score = 78.3 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/354 (14%), Positives = 115/354 (32%), Gaps = 23/354 (6%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE------ESSTFLAVIATVS 69
           I   +  SL ++    +P++   +     +P    F  +               V+  + 
Sbjct: 38  IADAVGTSLAWVYAIVSPLIVGGLAAILLYPGVKWFARRLGRVPLLSGREKLRHVLGVLL 97

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V   F++ L  L    +  +   + ++   N   +        +  G      W   L+ 
Sbjct: 98  VCVCFVLALSVLVALLLSVITGSIHRIRFENLESLA-----QYLAYGADGLYRWLIRLTT 152

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFL-------DYCLSIIFMIIALFFFYRDGF 182
              +          +   F+       G           +   +++F  I   +   D  
Sbjct: 153 SLGVPPDDVNAALEHAETFVFGDGDGLGQTLTKGVTAVRNAASTMVFAAIFAVYLMVDAP 212

Query: 183 SISQQLDSLGEHLFPAYW----KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            ++   + +   L          +    V         G  I A+  GL++G +  + GV
Sbjct: 213 HLASYWNGVLRSLMGERGYGRFAEFRADVVFAFTGYMRGQFIDAVLVGLMVGVSLTVVGV 272

Query: 239 PSHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
                +G+ T I  +IP   PI  +       ++ G+I           +  F+  + + 
Sbjct: 273 DFAPVIGIATGIGNLIPYIGPIVSYVLTVAVCVVNGDIGRLVVAAAVLLVIQFVDGQVIN 332

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           P ++   +++  +     L  G R  G+LG+FI     AL  + +++ +   + 
Sbjct: 333 PKILSDSVEVHPILVLVALTAGGRLGGVLGMFIAVPCAALAKIYFEKFVAWRRR 386


>gi|189468268|ref|ZP_03017053.1| hypothetical protein BACINT_04664 [Bacteroides intestinalis DSM
           17393]
 gi|189436532|gb|EDV05517.1| hypothetical protein BACINT_04664 [Bacteroides intestinalis DSM
           17393]
          Length = 376

 Score = 78.3 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 62/365 (16%), Positives = 126/365 (34%), Gaps = 21/365 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFL----KGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M    +     +R +I+  I++ +  L     G   P   A +I +  +P+ S F  K  
Sbjct: 1   MERKKITFDSFIRAVILGAIIIGVLMLLKRLSGVLLPFFLAWLIAYLIYPLVSFFQHKLR 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE----MKELVSKVVLANQHGIPVPRWLSD 112
             +  +++   +  + +      +L    M++    +K+L+ +          VP  LS+
Sbjct: 61  LKNRIISIFCALLTLTVIGSVAFYLLVPPMIQEFLRVKDLLIEYFSTTHTASNVPTTLSE 120

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
                    +  +  S    L  L  T  K      +    S    +   +    + ++ 
Sbjct: 121 FIRQNIDLHILEQMFSQENILDALKVTVPK------LWSLISESINLLFGFFTVFLILLY 174

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
            +F    D  SIS+    L    +      I   V   +   F G  ++A+  G++    
Sbjct: 175 IVFILL-DYESISEGWAHLMPKKYRKTVTGILNDVKDGMNRYFRGQALVALCVGILFSIG 233

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI----KGNIFNATCLFLWGAIE 288
           + +   P  + LG+    + M+P    I F    +  ++     G+ F            
Sbjct: 234 FLIIDFPLAIGLGLFIGALNMVPYLQIIGFVPTIMLAILKAADTGDNFWIIIASAAAVFI 293

Query: 289 LFIV--DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           +  +  D  L P ++G    L        L      MG+LG+ I   L  L+   ++  I
Sbjct: 294 VVQIIQDGYLVPRIMGKITGLNPAIILLSLSIWGSLMGMLGMIIALPLTTLMLSYYQRYI 353

Query: 347 MAIKE 351
           +  + 
Sbjct: 354 INQEN 358


>gi|325859632|ref|ZP_08172765.1| putative membrane protein [Prevotella denticola CRIS 18C-A]
 gi|325482912|gb|EGC85912.1| putative membrane protein [Prevotella denticola CRIS 18C-A]
          Length = 359

 Score = 78.3 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/363 (13%), Positives = 125/363 (34%), Gaps = 16/363 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKE- 56
           M++T+   + I   +I   ++   +    L G   P   A ++ +  +PI      K   
Sbjct: 1   MKQTITFDKFIRWALIALAVITVGFIINALSGALLPFFIAWLLAYLLYPIVKFVQYKLHV 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
                  +I    V  +     LF+    + +   L+                 + +   
Sbjct: 61  PGRVLSIIITLAFVAAIITAIFLFIVPPMIDQFDRLMHVANRYLHETTHANNISAMVQRW 120

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
           +  ++   +            +T +       +    +   +  +  C+++++M    FF
Sbjct: 121 VMENQFEIEKFLKSPDFTNAIKTAMPKLFS--VIGQTASIVISVIASCITLLYM----FF 174

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
              D  ++++    +       +W  +++ V + + +   G  ++++  G +    + + 
Sbjct: 175 ILLDYETLTENWIKIFPKRVRPFWAGLAQDVERELNNYIRGQGLVSLCLGALFCIGFTII 234

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI----KGNIFNATC--LFLWGAIELF 290
             P  + +GV+  I+ ++P     +    +   L+     G  F           A+   
Sbjct: 235 DFPMAIGMGVLIGILNLVPYLHTFALIPTAFLALLKAADTGQNFWIIFGSALAVFAVVQI 294

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++D  + P ++G  + L        L      +G +GL +   L  LI   W+  +   K
Sbjct: 295 LMDMVITPKIMGKAMGLNPAILLLSLSVWGSLLGFIGLIVALPLTTLIIAYWQRYVTKEK 354

Query: 351 ENK 353
           E +
Sbjct: 355 EEQ 357


>gi|150017277|ref|YP_001309531.1| hypothetical protein Cbei_2417 [Clostridium beijerinckii NCIMB
           8052]
 gi|149903742|gb|ABR34575.1| protein of unknown function UPF0118 [Clostridium beijerinckii NCIMB
           8052]
          Length = 393

 Score = 78.3 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 117/343 (34%), Gaps = 19/343 (5%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEE-----------SSTFLAVIATVSVMCLFIVPLL 79
             P++  +II +  +PI  S  +  ++                 +I  V ++ +F   +L
Sbjct: 51  IKPLIFGIIIAYLLYPITRSIETFLKQNKLYKLEKASTRRIIAIMITYVLIIGIFSGLIL 110

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVP-RWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            +++    ++    + + +     + +     S          L    + + +   I   
Sbjct: 111 GIYFMIGGQISNNTTIINMTQHISLYLKSNSFSTESIKGTLDRLDNSFIDNIKPYIISGI 170

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ-----QLDSLGE 193
            +L+      +    S   M       +    ++   +  +D                G+
Sbjct: 171 IYLQRYVESNLGNMTSYI-MSIGSGVATFFIALVISIYLLKDSEYFIGLWNKLYYLVFGK 229

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            +  +    + R+V +V      G  + A   G++   A  + G+     +G+I  I  M
Sbjct: 230 SILGSKIIYVFRVVHEVFAKYLRGQLLEAFFVGVLSAIALSIVGIDYAFVIGIIAGISNM 289

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP  G  I     +I  L+ G         +   +   I +  L P +VG  + L  + T
Sbjct: 290 IPYVGPIIGTILAAIMGLLSGAPIRIVYAIVAMLVVQQIDNNLLAPKIVGNSVGLHAVFT 349

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
              ++ G    GLLG+ +   + A   V++        E +++
Sbjct: 350 MMAILIGGNVGGLLGMLLAVPVAASFKVLFNNWYENYIEKQKQ 392


>gi|325106347|ref|YP_004276001.1| protein of unknown function UPF0118 [Pedobacter saltans DSM 12145]
 gi|324975195|gb|ADY54179.1| protein of unknown function UPF0118 [Pedobacter saltans DSM 12145]
          Length = 354

 Score = 78.3 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/353 (15%), Positives = 118/353 (33%), Gaps = 25/353 (7%)

Query: 1   MRETMLNP---QGIMRWMIMFIILVSLYFL-KGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M  +M  P   Q +   ++  I LV +  L K   +P++ + +     +P+   F  + +
Sbjct: 1   MDTSMKQPPFYQKLAMVLVALIALVYIAVLGKEVLSPLIFSFLFAILLYPLCRFFEKRCK 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
                 ++++ +  + + +     L        ++                 W++     
Sbjct: 61  LPRGLASILSVIVFLGIILGIFYLLGTQFRSLSEDWPQFKEQVIYAIDSSQDWVAKTFNI 120

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY---CLSIIFMIIA 173
             + +L                 +L       +       G   L      L ++F  I 
Sbjct: 121 DRSHQL----------------NYLTDAAKKLLSSSTVVIGATVLSISSILLFLVFTFIY 164

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
            FF       I   L ++ +        ++   V  +IR   +G+ I  +    +     
Sbjct: 165 TFFILLYRTLIVDFLTAVFKEKHLNIVHEVLEQVQYIIRKYLIGLMIQIVIVSTITCLVL 224

Query: 234 WLAGVPSHVALGVITAIMAMIPGGA--PISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
           WL G+     LG++T I+ +IP          +  I          A  + +       +
Sbjct: 225 WLIGIKYAFLLGLLTGIINIIPYIGIFTAMLLSALITFATTATFSKALIVIVALIGIHAL 284

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
               L P +VG  +K+    T  G+  G    G+ G+F+   ++A++ +++  
Sbjct: 285 DSNILLPTVVGSKVKINAFVTVLGVFIGEMIWGIPGMFLSIPIIAVMKIVFDR 337


>gi|196248998|ref|ZP_03147698.1| sporulation integral membrane protein YtvI [Geobacillus sp.
           G11MC16]
 gi|196211874|gb|EDY06633.1| sporulation integral membrane protein YtvI [Geobacillus sp.
           G11MC16]
          Length = 341

 Score = 78.3 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/340 (14%), Positives = 114/340 (33%), Gaps = 4/340 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           + RW+I+ ++L  + +L  +  P+L AL       P                        
Sbjct: 1   MRRWIIIVLLLAFVLWLLPYSVPLLLALATALLLEPSIRRLQENYRLKRVHAVTAIFTLF 60

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +    L FL    + ++  L  K+         V   L       ++S +  + +   
Sbjct: 61  LVIVGFSLYFLIVILVQQVMALSQKLPYVFSEATKVLDELIQT-WQSYSSSIPQEIIDSL 119

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           +      +  L +   +           I   + +  +  ++ALF    D   + Q +  
Sbjct: 120 ERSVNTVQQMLLSFATNLTQSLVHYIAAI-PAFFIHFLVYLVALFLICLDLPQLKQGIRR 178

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                       +   + K          + ++    +  +   + GV     +  I  +
Sbjct: 179 YLSERTHQRLSMVVSQLSKAGVGFIKAQFLFSLITFFLALAGLLILGVDYAALMAFIIVV 238

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           + ++P  G         I  +I G+      L +   + + +V + + P +    + +  
Sbjct: 239 VDILPILGTGSVLVPWGIISIINGSTGLGIGLIVL-FVIITVVRRIIEPKVFSTNLGISP 297

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           L     +  G + +GLLG FIGPV++ L+  + K  ++  
Sbjct: 298 LAALVSVYLGFQILGLLGAFIGPVIVILVETLVKAGVIKW 337


>gi|218132750|ref|ZP_03461554.1| hypothetical protein BACPEC_00611 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992476|gb|EEC58479.1| hypothetical protein BACPEC_00611 [Bacteroides pectinophilus ATCC
           43243]
          Length = 376

 Score = 78.3 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/336 (16%), Positives = 117/336 (34%), Gaps = 21/336 (6%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI--------SKKEESSTFLAVIAT 67
           I   + +S+ ++    AP + A  +      + +                + T  A++  
Sbjct: 28  ISIAVFLSIRYILPLAAPFVLAFFLSVL---LENKVTALADTAHGRLFRGNKTAAAIVIV 84

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA----NQHGIPVPRWLSDIPGGMWASELW 123
            ++     + +  L Y+ + E++ L+S         + H +     +     G+    ++
Sbjct: 85  TALTAAAAIVIGALGYFAISEIRGLISNYDYYCRMCDAHVLQACERMDGWL-GLEIGRMY 143

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
               +   SLK   +     + +     +AS      L    +   +II+  +  RD   
Sbjct: 144 GMVCNGVDSLKESFDGGRMASAMGTSFAYASAAMKKMLLLAGAFFMLIISTVYMSRD--- 200

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           ++          F      +   + ++    F    II     +V  +   + G P  V 
Sbjct: 201 MNSYRKWKKNTRFREEADVLWSALARLGNVYFKTQLIIICCTAVVCTTGLLIIGNPYAVV 260

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           +G+   ++  +P  G        SI  ++ GN+++A  L     I  F  +  L   L+G
Sbjct: 261 IGIAIGLLDALPFFGTGTVLIPWSIMAVLGGNVWHAAVLMTVYVITYFERE-ILEAKLMG 319

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             + +  +     +  G+   G  G  +GPV   LI
Sbjct: 320 KGLDISPVTMMAAIYIGLLVYGFWGFVLGPVSYCLI 355


>gi|218961458|ref|YP_001741233.1| hypothetical protein; putative membrane protein [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730115|emb|CAO81027.1| hypothetical protein; putative membrane protein [Candidatus
           Cloacamonas acidaminovorans]
          Length = 353

 Score = 78.3 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/325 (16%), Positives = 113/325 (34%), Gaps = 10/325 (3%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           +F       ++ A I  +   P  S F  K+        +   + +  +  +    L   
Sbjct: 21  FFYHPIIYYLIYAFIFSYILDPFVSWFERKRFPR-WLAVLTIYLIIAGIIALFTSRLVPA 79

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF---- 140
            + +   L + +    Q      +++  +P      E   +  +    L +  +      
Sbjct: 80  LVQQGNNLFNILSSGEQLT---GQYIITLPFIRRIYEFLQELDAQIPGLGMAPKLIEILD 136

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
                +  IP+               I  + +  FF  +D + + + +  +  + +    
Sbjct: 137 QANVFLAKIPKLLIDNYKKIFSTISIIFTVPLISFFLLKDKYKLRKGIVKMFSNRYFELC 196

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             + R +   I +    +    I  G++  +A  + GVP  + +G    +  +IP   P 
Sbjct: 197 IIMMRKIDSTIGNFLRAILFEIIAVGILASTALTIVGVPYSILIGATAGVANIIPYFGPF 256

Query: 261 SFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
              A+++   L   G I +A  + L   I   I +  + P +VGG I +  L     L+ 
Sbjct: 257 LGGALAVVTVLFNGGTILSAITVILAMYIVQLIDNNIVYPVVVGGTINMHPLLVLLTLIA 316

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWK 343
           G    G+L + I   L+ L   + K
Sbjct: 317 GGWYGGILWMLISVPLVYLTYNLIK 341


>gi|158338720|ref|YP_001519897.1| hypothetical protein AM1_5628 [Acaryochloris marina MBIC11017]
 gi|158308961|gb|ABW30578.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 385

 Score = 78.3 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/334 (15%), Positives = 116/334 (34%), Gaps = 19/334 (5%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-------STFLAVIATV 68
           I+ +   +L  +  +F  ++  ++I      + +  +S   +        S  +A++A  
Sbjct: 28  ILALNFWTLASISNYFGVLIGIIVIASLLAFLLNYPVSWCVQRGLRREPASIIVALLAIS 87

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  + I+ +   F         L   +    Q  I + + + +    +    L  +   
Sbjct: 88  ILFGIGIILIPIAFNQAQQLANRLPDWLESGRQQLILLSQQVEERGVSLNLDVLAVQAFD 147

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             Q                 +   A       LD  + ++  II  F+  + G  +   L
Sbjct: 148 RLQGQL--------QALTKSLLNIALGTVSSVLDILIDVLVTIILTFYLLQHGDELWDSL 199

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                       + +S  +    ++ F+G  +  I    VL   + +  VP  +  G+  
Sbjct: 200 IDWLPE---ESQQPVSETLRSSFQNYFIGQLLFGICMTSVLVPTFLILKVPFGLLFGLTI 256

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
             MA+IP G  +    V+  + ++ NI+    L     +   I+D  + P ++G    L 
Sbjct: 257 GTMALIPFGGTVGIILVTCLVTLQ-NIWLGLKLLAAAVVVQQILDNLVAPRILGTMTGLN 315

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
               F  ++ G +  GL+G+ I      +I    
Sbjct: 316 PAWVFISILIGAKAGGLIGVVIAVPTAVVIKTAL 349


>gi|29376343|ref|NP_815497.1| hypothetical protein EF1798 [Enterococcus faecalis V583]
 gi|227553608|ref|ZP_03983657.1| permease [Enterococcus faecalis HH22]
 gi|256853348|ref|ZP_05558718.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|294779172|ref|ZP_06744581.1| putative membrane protein [Enterococcus faecalis PC1.1]
 gi|300860743|ref|ZP_07106830.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
 gi|29343806|gb|AAO81567.1| hypothetical protein EF_1798 [Enterococcus faecalis V583]
 gi|227177256|gb|EEI58228.1| permease [Enterococcus faecalis HH22]
 gi|256711807|gb|EEU26845.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|294453732|gb|EFG22125.1| putative membrane protein [Enterococcus faecalis PC1.1]
 gi|300849782|gb|EFK77532.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
 gi|323480953|gb|ADX80392.1| conserved hypothetical protein [Enterococcus faecalis 62]
 gi|327535361|gb|AEA94195.1| hypothetical protein OG1RF_11508 [Enterococcus faecalis OG1RF]
          Length = 384

 Score = 78.3 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 58/373 (15%), Positives = 126/373 (33%), Gaps = 28/373 (7%)

Query: 11  IMRWMIMFIILVSLYF-------------LKGFFAPVLSALIIGFTSWPIYSSFISKK-- 55
           ++R++ +  ++V                 L G  +P ++  +I +               
Sbjct: 12  VVRFLFVMALIVGYLLITNYQHFVHSVSGLLGILSPFITGFVIAYLLSGSQKKIEGLLER 71

Query: 56  -------EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR 108
                  +       ++  + ++ +F++ L ++    +  + +L + +     H +    
Sbjct: 72  VPLPVVKKAKHGLSVLLLYLIILFIFVLTLNYIVPLLISNLVDLANSLPTFYDHMVQFVM 131

Query: 109 WLSD--IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLS 166
            L D  I       +     L      + L++    T  +  +          FL+  L+
Sbjct: 132 SLEDKGILKTAAIEKYLNSVLKDLSPERFLNQ---WTQALFSLGTLTKNVSSFFLNAFLT 188

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
           +I  I AL F       + +    L         +       K+         + A   G
Sbjct: 189 LIISIYALVFKQSILTFVEKAAHKLLSEKVYKQTQTWLNTTNKIFYKFISCQFLDACIIG 248

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           +       +  V   V LG++  I  MIP  G+  +     +  L  G +  A  + L  
Sbjct: 249 VSSTILLSILNVKFAVTLGILLGICNMIPYFGSIFASIVAGVITLFTGGVTQAITVLLVL 308

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            I   I    + P ++G  + +  +     +  G    G+LG+F+   + A+I +I  E 
Sbjct: 309 LILQQIDGNIIGPRIMGDALNVNPILIIVSITIGGAYFGVLGMFLAVPVAAIIKIIVSEW 368

Query: 346 IMAIKENKEKISS 358
           +   KEN + + S
Sbjct: 369 LNESKENDKIVDS 381


>gi|86142667|ref|ZP_01061106.1| permease [Leeuwenhoekiella blandensis MED217]
 gi|85830699|gb|EAQ49157.1| permease [Leeuwenhoekiella blandensis MED217]
          Length = 367

 Score = 78.3 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/343 (15%), Positives = 117/343 (34%), Gaps = 18/343 (5%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +  ++  LY ++     +  A +I     P+ +    + +  +   A+   + V+C+   
Sbjct: 22  IVFVIWFLYQIQAVLIFICIAAVISLIGRPVVNFLKHQCKFGAVAAAITTLLMVICVISG 81

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L       + + + +        +H I           G+    L            + 
Sbjct: 82  ILALFIPILIDQSEHISKINFEEVKHNINRLNVEFSRAMGVDQVTLIE---------GLK 132

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
              F+K   I  IP F +     F    + ++ +I   FF  +D   +            
Sbjct: 133 QSDFIKNFDISVIPTFINSILGNFSSLIVGLLSVIFISFFLLKDSHLLLDSFLVFANTGE 192

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
              ++++     +++   FLG+ +  +    +         +P+  A+ +  A++ ++P 
Sbjct: 193 ERRFRRVFHKTKQLLSRYFLGILLQLMILFTIYAILLVSFQIPNAFAIALFCAMLNVVPY 252

Query: 257 GAPISFTAVSIYLLIKGNIFN--------ATCLFLWGAIELFIVDKTL-RPFLVGGPIKL 307
             P+    V + L+I GN                  G     ++D  + +P + G  +K 
Sbjct: 253 IGPVVGGVVMMLLVISGNFTADFQEVILPKMIYVFIGYCIAQLIDNFINQPLIFGSSVKS 312

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             L  F  +V      G+ G+ +       I VI KE +   K
Sbjct: 313 HPLEIFLVIVIAGLIFGIFGMVVAIPAYTAIKVIAKEFLSEYK 355


>gi|227501244|ref|ZP_03931293.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
 gi|227216645|gb|EEI82049.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
          Length = 405

 Score = 78.3 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/342 (11%), Positives = 113/342 (33%), Gaps = 19/342 (5%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST-------------FLAVI 65
           ++L +    +     ++ A II             +  + +              ++   
Sbjct: 37  LLLGAYSVFRPIMYGLVIAFIINLPMNFFQEKLFGRLIDKNKHRTLVLALSLSLSWIIFF 96

Query: 66  ATVSVMCLFIVP-LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
              ++M    +P L+      +  +   + K++    +     +  +++   +   ++  
Sbjct: 97  GLFTIMLTVFIPELVAAISSLIDNIPVFMDKLIEYLNNQKLFNQIAAEVINKLNKLDI-E 155

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                  SL    +  L +        F+S    + + +  SI   +       RDG   
Sbjct: 156 NITKDITSLVNGKDMGLLSKTSSLFNSFSSWLMSVIMGFFFSIYVSMNKKA--LRDGS-- 211

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           ++   +  +     +    +++        F    +  +  G +      L  +P    +
Sbjct: 212 NKLFYANFDDKTVEHINYFAKLTYDSFSRFFETKLLSCLSIGTICFIGMLLLKLPMAGMI 271

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            ++     +IP   P+  T + + L+   +   A    ++      + +K L P ++G  
Sbjct: 272 AILVGAFDIIPYFGPLIATGIGVILIFIQSPSQALVFLVFVLAIQQLQEKILYPLVIGKR 331

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
             LP +  F  +  G    G++G+     +  +I  + +++I
Sbjct: 332 QGLPAIWIFISVFIGAGLFGIVGMVTSMPIATVIYNLIQDNI 373


>gi|108763996|ref|YP_635383.1| hypothetical protein MXAN_7270 [Myxococcus xanthus DK 1622]
 gi|108467876|gb|ABF93061.1| putative membrane protein [Myxococcus xanthus DK 1622]
          Length = 396

 Score = 78.3 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 75/212 (35%), Gaps = 8/212 (3%)

Query: 141 LKTNGIDFIPRFASRFGMIFL-------DYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           L   G+DF+     R     L             +  +  LFFF +D   +   + +   
Sbjct: 166 LFEKGLDFLKSNLGRITTGVLAGANFAAQAVAGGLLTVTLLFFFVKDTERLGGWVLARVS 225

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  + +       +     G+ I+A+ + + +G+   + GVP  + L  +T +   
Sbjct: 226 PSRRDTVRAVGLRAWGTLSGYLRGVVIVALVDAVGIGAGLAIIGVPLVLPLAALTFVGGF 285

Query: 254 IPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
            P  GA ++     +  LI     +A  +         +    L P ++G  + L  +  
Sbjct: 286 FPVIGATLAGVVAVLVALITNGPLDALLVLAVVLGVQQLESNVLEPVVMGRAVPLHPVVI 345

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              +  G    G+ G F+   + A+++    E
Sbjct: 346 LLSITAGGVLFGVAGAFLSVPVAAVLSAAGNE 377


>gi|146300706|ref|YP_001195297.1| hypothetical protein Fjoh_2957 [Flavobacterium johnsoniae UW101]
 gi|146155124|gb|ABQ05978.1| protein of unknown function UPF0118 [Flavobacterium johnsoniae
           UW101]
          Length = 366

 Score = 78.3 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 131/352 (37%), Gaps = 24/352 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           M + +  P       I+  ++   Y     K    PVL A +      PI++   +K + 
Sbjct: 1   MTQPLKLPFYAKLACILVSLISFAYIFCIAKDILTPVLLAFLFAVLLLPIFTFLNTKLKF 60

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                A+I     +   +  L+F+ Y       +  +    AN   I + +++ +     
Sbjct: 61  PRHLAAIICMAVFLSFIVGILVFISYQVTYMANDFDTIKKNANSFIIEIHKFIRE----- 115

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL---DYCLSIIFMIIAL 174
                      + +      + +L +   D +    ++ G   +   D  L    +II  
Sbjct: 116 -----------NFEISIGDQKKYLDSVTKDSVKNGQAKLGSAIISISDVLLDSTIIIIYT 164

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           F F          L  L      +  K I   +   I +  + + I  I   ++ G   W
Sbjct: 165 FLFLIYKEHFKLFLAKLISKENHSVLKDILSQIKVSINNYIVSLIIEMIVVSVLTGLGLW 224

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGN--IFNATCLFLWGAIELFIV 292
           + G+   + LG+IT I+ +IP    +    +++   + G+  I     + +   I  FI 
Sbjct: 225 IIGIKYFILLGLITGILNLIPYIGILVAGIITVLASLTGSAEISMILGILIVNIIVQFID 284

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           +  L P ++   +++    +  G++ G    G+ G+F+   L+A++ +I+  
Sbjct: 285 NNLLVPLIINTKVEINAFVSIMGIIVGGAAAGISGMFLAIPLLAILKIIFDR 336


>gi|225874023|ref|YP_002755482.1| hypothetical protein ACP_2444 [Acidobacterium capsulatum ATCC
           51196]
 gi|225792597|gb|ACO32687.1| putative membrane protein [Acidobacterium capsulatum ATCC 51196]
          Length = 642

 Score = 78.3 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/363 (12%), Positives = 102/363 (28%), Gaps = 38/363 (10%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +++ +LYF +  F P+  ALI+ F   P+      +     T   ++  +       +
Sbjct: 22  LALVIAALYFGRDIFIPLAMALILSFLLTPLAERVEHRLHLRRTPSVILVAIVAFGCMAI 81

Query: 77  PLLFLFYYG----------------------------MLEMKELVSKVVLANQHGIPVPR 108
               +                                + +    + ++  A   G P P 
Sbjct: 82  IGWVVAAQLLTVVDALPNYRDNIQAKIDAIHAPAKGPVAQAVRSIQEISNALSSGAPQPA 141

Query: 109 WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP-----RFASRFGMIFLDY 163
              ++    +              L+  S+          +         +  G I L  
Sbjct: 142 PAPEVQLPSFRRMTRADLEKEILRLQAESQANTNKGPTPVMVVSPPVSETAYLGTILLPV 201

Query: 164 CLSIIF---MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
              +     M++   +       +  ++  L          +      + I        +
Sbjct: 202 VKPLGILAAMLVFTVYMLLRREDLRNRVLLLAGVGHINVMSQALNDAAERISRYLRMNVL 261

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNA 278
           +  G G V+G   +L  VP+    GV+  +M ++P  G            L +    ++ 
Sbjct: 262 VNAGFGAVVGIGLYLLHVPNATLWGVLVGLMRLVPYFGIWAAGSVTFIFTLAVFPGWWHP 321

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             + +       ++     P+  G    +  L      +      G  GL +   L   +
Sbjct: 322 LFVAMMLVAIELLISNFFEPWFYGSHTGVSSLALLVSAIVWTILWGWAGLILSTPLTVCL 381

Query: 339 AVI 341
            VI
Sbjct: 382 IVI 384


>gi|116611251|gb|ABK03975.1| protein of unknown function UPF0118 [Arthrobacter sp. FB24]
          Length = 371

 Score = 78.3 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/320 (13%), Positives = 106/320 (33%), Gaps = 11/320 (3%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           +++AL I     P+      +K         I  +  + + +  +   F   +  +    
Sbjct: 63  IVTALFIALGLDPVVRWLEGRKLPRP-----IGILVSVTVLVSAVAGFFATLIPTI---- 113

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             V    Q     PRW+ D     +   +  +     +  + L +     + +  I    
Sbjct: 114 --VQQVTQVVQEAPRWIQDFIDSDFFRSVDDQFGVRERITQELEKFVNNPDAMGGIFGGV 171

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
             FG    +     + +++   +F     ++ +    L      A  + +S  +   + +
Sbjct: 172 VGFGSTVANGLFGTLIVLVLSLYFLAALPAMKKWGYRLAPRSRRARVEALSEEITGSVGN 231

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
             +G   +A+           + GVP  V L  + A++A IP    +    +   + +  
Sbjct: 232 YVIGQACVALLNATFAFIVMSIVGVPFAVLLAFVVALLAFIPLVGGMIAGVLVTLIALTA 291

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
               A    +     L      + P ++   + +P       ++ G   +G+LG  I   
Sbjct: 292 GWQTALVYAICYFAYLQFEAYFISPRIMQKAVAVPGAVAVISVIAGGSLLGVLGALIAIP 351

Query: 334 LMALIAVIWKESIMAIKENK 353
             A + ++ KE  +  ++  
Sbjct: 352 TAAAVMLLVKEIFIVRQDKH 371


>gi|301155545|emb|CBW15013.1| predicted inner membrane protein [Haemophilus parainfluenzae T3T1]
          Length = 348

 Score = 78.3 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/343 (13%), Positives = 114/343 (33%), Gaps = 11/343 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             + +PQ +    I+    +++YF     AP+L A+++ +      +    K +      
Sbjct: 11  RRLSDPQAMGLLAILLFGFIAIYFFSDLIAPLLIAIVLAYLLEMPINFLTKKLKFPRMLA 70

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++     + L ++    L      +   L+S +         +  WL  +P        
Sbjct: 71  TLVIFGGFLTLALLVFFGLVPTLWNQTISLLSDLPAMFNK---LHEWLLALPEHYPELID 127

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           +T   +   + +     F ++     I        M  +   +    + + +FF  +D  
Sbjct: 128 YTMIDTFFSAARAKILGFGESAVKLSITSL-----MNLVSLGIYAFLVPLMMFFMLKDKT 182

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +   +             K+   + + I +   G  +  +  G+V    +   G+   +
Sbjct: 183 ELLAGVSRFLPK-NRLLASKVWNEMQQQIANYIHGKLLEILIVGVVTYIIFLSFGLNYPL 241

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFL 300
            L V   +  ++P  GA +    V++  + +  I       +       ++D   L P+L
Sbjct: 242 LLSVAVGLSVLVPYIGAVLVTIPVALVAMFQFGISPTFWYLIVAFAVSQLLDGNLLVPYL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               + L  L     ++      G  G+F    L  L+  +  
Sbjct: 302 FSEVVNLHPLVIIISVLIFGGLWGFWGVFFAIPLATLVKAVLN 344


>gi|302558676|ref|ZP_07311018.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
 gi|302476294|gb|EFL39387.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
          Length = 447

 Score = 78.3 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/318 (12%), Positives = 106/318 (33%), Gaps = 19/318 (5%)

Query: 17  MFIILVSLYFLKGFFAPV---LSALIIGFTSWPIYSSFISKKEES---STFLAVIATVSV 70
           + ++  +++ L    + V   + A +       +    +++             +  +  
Sbjct: 115 LLVLAGTVWVLMRIISAVQLVVLAFVASLLITALLQPTVARLRRYGVPRGPATALTALFG 174

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             +  +   F+ +  M  +  L  ++         +  WL + P  +   ++     +  
Sbjct: 175 FVVIGLIGWFVTWQVMENIDHLAGQIQDGIDE---LRNWLLNSPFHVTDKQINEIAKNLR 231

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           +++   +E                    + ++    I+  + +  F   DG  I +    
Sbjct: 232 EAVGANTEQITSAGLEGV---------TVVVEALTGILLAVFSTLFLLYDGKRIWEWSLK 282

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L                 + + +   G  I+A+ + + +G   +   VP  V L V   +
Sbjct: 283 LVPAAARPGVAGAGPAAWRTLTAYVRGTVIVALIDAIFIGLGIYFLDVPMAVPLAVFIFL 342

Query: 251 MAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            + IP    +   A+++ + L+   +F    + +       I    L+PF++G  +++  
Sbjct: 343 FSFIPLVGAVVSGALAVVVGLVTQGVFTGVMVLVVVLAVQQIEGHILQPFILGRAVRVHP 402

Query: 310 LPTFFGLVGGVRTMGLLG 327
           L     +  G    G+ G
Sbjct: 403 LAVVLAVASGGMVAGIGG 420


>gi|260588950|ref|ZP_05854863.1| putative membrane protein [Blautia hansenii DSM 20583]
 gi|260540729|gb|EEX21298.1| putative membrane protein [Blautia hansenii DSM 20583]
          Length = 379

 Score = 78.3 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 116/334 (34%), Gaps = 6/334 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +  F      A I+      +     SK +  +  L     + +  LF+V +L++    
Sbjct: 41  IVFPFLLGAAMAFILNVPMSFMEKRLFSKTKGKAKKLKRPICLVLAILFVVAILWIVLLV 100

Query: 86  ML--EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
           ++      + S  V      I + RW  DI       E+W   L       I +      
Sbjct: 101 VIPEVASTVASLSVNIEAALIKLQRWAMDIFEDNKQIEVWIASLQFDWDGIIHTAFGFLK 160

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK-- 201
           NG   +           ++  ++     +   +       ++ Q+  +    F       
Sbjct: 161 NGAGNVLNSTMTVAKTVINSVMNFCVAFVFACYILLQKEKLAVQIRKILYAFFSKKVVTK 220

Query: 202 --KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
              I+ +  K   +   G    A+  G +   +  +   P  + +GV+ A  A+IP    
Sbjct: 221 VLDIASLSYKTFANFVTGQCCEAVILGTMFFISMSILRFPYALLVGVLIAFTALIPIFGA 280

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                +  +L++  +   A    +   +   +    + P +VGG + LP +     +  G
Sbjct: 281 FIGCFLGTFLILVADPMKAIAFVILFLVLQQVEGNLIYPHVVGGSVGLPSIWVLVAVTVG 340

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              MG++G+ +   + +++  +++E +    + +
Sbjct: 341 GSLMGIVGMLVFIPICSVLYALFREMVYKRLKER 374


>gi|212634763|ref|YP_002311288.1| hypothetical protein swp_1944 [Shewanella piezotolerans WP3]
 gi|212556247|gb|ACJ28701.1| Conserved hypothetical protein [Shewanella piezotolerans WP3]
          Length = 360

 Score = 78.3 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/323 (15%), Positives = 107/323 (33%), Gaps = 22/323 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G      + +IL  +        P + ++ I     P+ +     K      LAV+  +
Sbjct: 12  KGFAISAFIVVILAGIKTASPIVVPFVLSVFIAVICNPVINWLTRHKAPR--GLAVLMLM 69

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + L  + L  L    + E  + +                             W     
Sbjct: 70  VFIVLMGLWLASLVGTSINEFSKQLPFYRDQLIEQFS-----------------WIVDKL 112

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +++I  E  L            +           ++  +I+ + F   +    S+++
Sbjct: 113 AALNIQISKEQILAYFDPGIALSMTTNMLTGVGSVMANLFLIILTVVFMLFESNGFSRKM 172

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L         K+I R +  V +   +   ++++G G ++G   ++ GV   +  GVI 
Sbjct: 173 -HLALDDPDMRLKQIDRFLHSVNQYMVIKT-LVSLGTGFIVGLGLYIIGVDYALLWGVIA 230

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP  G+ I+     +   I+     A  + L       I+   + P  +G  + L
Sbjct: 231 FLFNYIPNIGSIIAAIPSVLLAFIQIGPGAAGAVALLYLGTNTIMGNVVEPRYMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFI 330
             L  F  L+     +G +G+ +
Sbjct: 291 STLVVFLSLIFWGWLLGSVGMLL 313


>gi|160938088|ref|ZP_02085445.1| hypothetical protein CLOBOL_02983 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439082|gb|EDP16837.1| hypothetical protein CLOBOL_02983 [Clostridium bolteae ATCC
           BAA-613]
          Length = 415

 Score = 78.3 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/343 (13%), Positives = 112/343 (32%), Gaps = 21/343 (6%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEES-----------STFLAVIATVSVMCLFIVPLL 79
             P++   ++ +   PIY+       E             +      T+  + L I  + 
Sbjct: 47  LMPIIYGAVLAYLMLPIYNKTRVYTTEKLKRCIKDGHTADSLAKAAGTLVSLLLLIAIVC 106

Query: 80  FLFYYGMLEM-KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            LF+  + ++   ++       ++   +  WL  +       E     +   +      +
Sbjct: 107 GLFWMVIPQIYTSIIGLQESLGENINNLSLWLMKMFEDNPTIE--QTIMPFYEQAATEFQ 164

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCL---SIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +L T+ +  + +         L       +I+  +I + +F     ++S Q   +   L
Sbjct: 165 NWLTTDLVPNMSKIIGELSTGLLSVVTVVKNILIGVIVMVYFLNIKDTLSAQSKKIVYSL 224

Query: 196 FPA----YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                        R    V      G  + ++  G++   A     +P  + + VI  + 
Sbjct: 225 LKLKDANRLVSEVRFAHSVFGGFITGKLLDSLIIGIMCFFAMQFLKMPYVLLVSVIIGVT 284

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP   P      S +L++  +        ++  +        L P ++G    LP   
Sbjct: 285 NVIPFFGPFIGAVPSAFLILLVSPMKCLYFLIFILVLQQFDGNILGPKILGDSTGLPSFW 344

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             F ++      G +G+ I   L A+I  +    + +    K+
Sbjct: 345 VLFSILLFGGLFGFVGMIIAVPLFAVIYRLTATYVSSALRKKD 387


>gi|86605937|ref|YP_474700.1| hypothetical protein CYA_1254 [Synechococcus sp. JA-3-3Ab]
 gi|86554479|gb|ABC99437.1| putative membrane protein [Synechococcus sp. JA-3-3Ab]
          Length = 412

 Score = 78.3 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/299 (17%), Positives = 119/299 (39%), Gaps = 9/299 (3%)

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGM 117
             +L V+  +S +       L +    + + + L++++     +  +    W++D+ G  
Sbjct: 59  PRWLGVVVYLSFIAGIAGLALLMGPTVVTQTQRLLARLPSYLERLQLLADTWIADLAGVD 118

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
            A+  +   L  PQSL   +           +   +  F    L   L+++  +    + 
Sbjct: 119 PAALDYLNQLLDPQSLMNWA-----VRSGQQLLVQSFDFTRGLLGGLLTVVLTLFISGYM 173

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
              G  + Q L  L  + +     +  + + + +     G  +++   G+++  +    G
Sbjct: 174 LVSGSDLVQGLVELFPYPWNERLAQQVQPMAQRMGGYIQGRVLVSAILGVMIAVSLRFLG 233

Query: 238 V-PSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
           +    +ALGVI     +IP  G  +      +  +++G       L L+      +    
Sbjct: 234 LSEFALALGVIAGFTNLIPFIGPVLGSLPALVVAIVQGGWTFLWVLILY-VAVQNLETYV 292

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L P LVG  +++  L     ++GG + +G++G  I P  +A +AV+ +   +  K+  E
Sbjct: 293 LDPLLVGSSVRVKPLYQLLAVLGGTQLLGIVGAVIAPPWVAGMAVLLENLYLKPKQEAE 351


>gi|114047909|ref|YP_738459.1| hypothetical protein Shewmr7_2417 [Shewanella sp. MR-7]
 gi|113889351|gb|ABI43402.1| protein of unknown function UPF0118 [Shewanella sp. MR-7]
          Length = 366

 Score = 78.3 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 102/303 (33%), Gaps = 12/303 (3%)

Query: 45  WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
           WP+      K   + T  A +  V  + + ++    L      +   L++ +      G+
Sbjct: 54  WPVAQML--KLGINRTTGASLVLVLFLGIVVLLTFGLIPSVWRQGVSLMTDLPSMIDKGL 111

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
              + L+       +SE           +    +  L T  +  I +    +    L   
Sbjct: 112 QTLQGLATQYPQFVSSEQLNL-------MVAELKKLLDTQHLLDIAKQLIGYSASLLVLM 164

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
           +  I + + +FFF +D   +                +K+   + + I +   G  I  + 
Sbjct: 165 VYAILVPLLVFFFLKDKDQLISGSKRFFPT-NRQLARKVWFEMHQQIFNYIRGKVIEIVI 223

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFL 283
            G+     +   G+     LGV+T +  +IP  GA +    +++    +    +     +
Sbjct: 224 VGVASYIFFAFMGLRYSALLGVLTGLSVLIPYVGATLVTLPITLVAFFQWGFSSEFGYLM 283

Query: 284 WGAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            G   +  +D   L P L    + L  +     ++      G+ G+F    L +L+  + 
Sbjct: 284 LGYGIIQALDGNVLVPILFSDAVDLHPVIIIAAVLVFGGLWGVWGVFFAIPLASLVKAVI 343

Query: 343 KES 345
              
Sbjct: 344 NAW 346


>gi|89075007|ref|ZP_01161452.1| putative permease PerM [Photobacterium sp. SKA34]
 gi|89049246|gb|EAR54810.1| putative permease PerM [Photobacterium sp. SKA34]
          Length = 361

 Score = 78.3 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/339 (15%), Positives = 118/339 (34%), Gaps = 14/339 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +   +I+    +++YFL     P+L A+++ +   WP+    ++K     T    I
Sbjct: 15  DPHAVSLVVILLGGFLTIYFLGSLITPLLVAIVLAYLLEWPVAR--LNKLGMPRTLSVAI 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +    L ++ L  L      ++  L + V         +  ++S +P          +
Sbjct: 73  VLLVFASLMVLALFGLVPTIWHQITNLSADVPKMFN---DLQIYVSSLPERYPDFVQPAQ 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            +    +L+       ++     +    S          + +I + + +FF  +D   + 
Sbjct: 130 VVDLMNTLREKVLGLGESVVKGSLASLVS-----LATIGVYLILVPLLVFFLLKDKDEML 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + L ++          K+   + + I +   G     I  G+     + +  +   V L 
Sbjct: 185 RTLLNVLPK-NRRLASKVGSEMNQQISNYIRGKVTEIIIVGIASYVTFEVMDLRYAVLLS 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTLRPFLVGG 303
           V+  +  +IP  GA      V++  L +         L L   I   +    L P L   
Sbjct: 244 VLVGLSVLIPYIGAAAVTVPVAMVGLFQWGWTPDFWWLLLAYGIIQMLDGNVLVPILFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            + L  +     ++      G  G+F    L  L+  +W
Sbjct: 304 AVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVW 342


>gi|222150878|ref|YP_002560031.1| hypothetical protein MCCL_0628 [Macrococcus caseolyticus JCSC5402]
 gi|222120000|dbj|BAH17335.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 376

 Score = 78.3 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/321 (12%), Positives = 103/321 (32%), Gaps = 14/321 (4%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P+L    + +   P       K+         +  +++  +  +   F+      +    
Sbjct: 53  PLLLGGFLYYIVVPFQDKLEEKRHLKRWQSVTLIMIALCLIIGLLFSFVGPIVSKQTNNF 112

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG--IDFIP 150
           +       +                + S    +    P+++K      ++        I 
Sbjct: 113 IHNYPAIQRE------------FQSYVSLALDQRDKLPENVKDGINNGIEKLNEYSGKIV 160

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
             A  F   F+     +I +   L +  +D       + +        +   + + + K 
Sbjct: 161 TNAFSFITQFISTLFLLILVPFFLIYMLKDHDRFVPFVSAPFTGKRKVFVVNLFKDIDKT 220

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           +RS   G   ++I  GL+L + Y + G+   V L +   +  +IP   P      +I + 
Sbjct: 221 LRSYIQGQVTVSIILGLLLLAGYLVIGLDYAVILAMWGMVTNLIPFLGPYMAVIPAIIIA 280

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +  +   A  + +   +   +    + P ++G  + +  L     ++      G   + +
Sbjct: 281 LIQDPVMAIYVIIIMFVAQQLEGNVITPNIMGKTLNMHPLTIITVILAAGNLGGFFAILV 340

Query: 331 GPVLMALIAVIWKESIMAIKE 351
                A++  I +   M  +E
Sbjct: 341 AVPTYAVLKTIVRNFYMHRQE 361


>gi|163851489|ref|YP_001639532.1| hypothetical protein Mext_2065 [Methylobacterium extorquens PA1]
 gi|218530296|ref|YP_002421112.1| hypothetical protein Mchl_2339 [Methylobacterium chloromethanicum
           CM4]
 gi|163663094|gb|ABY30461.1| protein of unknown function UPF0118 [Methylobacterium extorquens
           PA1]
 gi|218522599|gb|ACK83184.1| protein of unknown function UPF0118 [Methylobacterium
           chloromethanicum CM4]
          Length = 370

 Score = 78.3 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/310 (13%), Positives = 106/310 (34%), Gaps = 14/310 (4%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I+ +++  LY L+    P ++ L + +   P+                + AT+ ++  F+
Sbjct: 11  ILAVVVFLLYELREVMLPFVAGLALAYLLDPLADRLERLGLGR-----LAATLLILAGFV 65

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V  + L    +      ++ +V +    +   + +     G     +    + +   L+ 
Sbjct: 66  VGFVVLLIIVVPLAAGQIASLVNSLPTMVGRLQSILVERAGPLLQRIGGTEVVN--ELQS 123

Query: 136 LSETFLKTNGIDFIPRFASRFG--MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
              T +   G  F+    S +      +     ++   +  F+   D   +   LD    
Sbjct: 124 SVGTLVGQGGAWFLAFLKSLWTGSQALVSIASLLVVTPVVAFYVLHDWDRMIAALDGWVP 183

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  ++++  +   +     G +++ +  G       +L G+   V +G+I+  +  
Sbjct: 184 PRHRPTARRLAGEIDGAVTGFVRGQSLVCLILGSFYAVGLFLVGLNFGVLIGMISGFLTF 243

Query: 254 IPG-----GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           IP      G  +S     +     G+  +         +  F+    + P LVG  + L 
Sbjct: 244 IPYVGTLTGFLLSVGVALVQWWPSGDWLHIGLTVGVFLVGQFLEGNVISPKLVGDSVGLH 303

Query: 309 FLPTFFGLVG 318
            +   F L+ 
Sbjct: 304 PVWLMFALLA 313


>gi|296114291|ref|ZP_06832945.1| hypothetical protein GXY_00868 [Gluconacetobacter hansenii ATCC
           23769]
 gi|295979052|gb|EFG85776.1| hypothetical protein GXY_00868 [Gluconacetobacter hansenii ATCC
           23769]
          Length = 425

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/356 (15%), Positives = 113/356 (31%), Gaps = 19/356 (5%)

Query: 1   MRETMLNPQGIMRWMI-MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           MR T ++ +     ++ +  +  +LYF      P++ AL++             K +   
Sbjct: 32  MRHTRMDLKTACLLVLCILAVFYTLYFAASIILPMILALVVNLLLSSPMRFLHLKLKLPK 91

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL--------- 110
              A++  + V  +       +     +     + +   A         +L         
Sbjct: 92  PLAALVLILGVFGVV----GAIGTAISVPAAGWIERAPEAMNALGERLAFLRGPIHLLNT 147

Query: 111 --SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII 168
             + I   M  +     H +                       F S   +    +     
Sbjct: 148 ASARIESFMNIAGSHLDHATKAGGDDAEHIVMSTAPASGGFDSFGSSLLLGTRAFVGQFF 207

Query: 169 FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGL 227
            MI+ LFF    G S+ ++   +           +I+  + + +      +TII    GL
Sbjct: 208 TMILMLFFLLAQGDSLLRRFVEIMPTFADKRRTVQIAYQIERNVSLYLATITIINFLVGL 267

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWG 285
                 WL G+P+ +  GV+  ++  IP   P+        + L    ++  AT      
Sbjct: 268 ANMLQCWLLGMPNPLLWGVMAFLLNYIPIIGPMMGITIYFLVGLFTFPSVLQATLPPAIY 327

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                   +T+ P ++     L  +     L+      G+ G F+   L+A+  +I
Sbjct: 328 LCIHLTEGETITPMVLARRFTLNPVLVMGSLMFWDWLWGIGGAFLSVPLLAVFKII 383


>gi|323492363|ref|ZP_08097516.1| hypothetical protein VIBR0546_11014 [Vibrio brasiliensis LMG 20546]
 gi|323313410|gb|EGA66521.1| hypothetical protein VIBR0546_11014 [Vibrio brasiliensis LMG 20546]
          Length = 354

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 57/350 (16%), Positives = 121/350 (34%), Gaps = 14/350 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +    I+    +++YF     AP+L A+++ +   WP+    +S+     T   ++
Sbjct: 15  DPHAVSLVAILLFGFITIYFFGNLIAPLLVAIVLAYLLEWPVVQ--MSRLGIPRTLAVIL 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +    L IV +  L      ++  L++ +       I +  +++++P      E +  
Sbjct: 73  VILGFTSLMIVAIFGLVPTIWQQVGNLINDIPTMY---IGLQGFIAELPQRFPELEHFQI 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                 + K  +    +T     +    S          + +I + + +FF  +D   + 
Sbjct: 130 VEPLVTNAKNQAIGMGETVVKGSLASLVS-----LATLGVYLILVPLLVFFLLKDKDEMI 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +          K+   + + I +   G  +  +  G V    + L  +   V L 
Sbjct: 185 EMASGVLPR-NRRLATKVWHEMNEQISNYIRGKVMEILIVGGVSYITFALLDLRYSVLLA 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V   +  +IP  GA      V+I  L   G       L +   I   +    L P L   
Sbjct: 244 VAVGLSVLIPYIGAAAVTVPVAIVGLFQWGLTPQFYWLLVAYGIIQALDGNVLVPVLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            + L  +     ++      G  G+F    L  L+  +W       +E  
Sbjct: 304 AVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWNALPSHEEETP 353


>gi|303229262|ref|ZP_07316057.1| putative membrane protein [Veillonella atypica ACS-134-V-Col7a]
 gi|303231297|ref|ZP_07318033.1| putative membrane protein [Veillonella atypica ACS-049-V-Sch6]
 gi|302514027|gb|EFL56033.1| putative membrane protein [Veillonella atypica ACS-049-V-Sch6]
 gi|302516035|gb|EFL57982.1| putative membrane protein [Veillonella atypica ACS-134-V-Col7a]
          Length = 373

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 116/335 (34%), Gaps = 11/335 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEES---------STFLAVIATVSVMCLFIVPLLFL 81
           F P++    + F    +   +                   L++I +   + L +  +  +
Sbjct: 41  FVPLIVGACMAFVLDILVVRYERWLWPHIKSGWRYKIRRPLSIILSFVTISLIVYFIARM 100

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               ++    L+  V  A Q  +   +W+  +   +  +   T   +      +      
Sbjct: 101 AVPQLVHSITLI--VSAAPQLYLDFQQWIYHLSNTVPLASNPTVLNTLNGESIVNYTREW 158

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            T G  ++           ++  L +IF I  L    R      + L +     +     
Sbjct: 159 GTKGGTYVVNTMGTILSWTVNIALGLIFAIYMLLDKERLMSQGKRILKAYASDTWVNRVT 218

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            ++++  +   S F+G  I A+  G+++G   W+  +     +  +  +  +IP      
Sbjct: 219 YVAKVAVQTFSSFFVGQFIDALILGIMVGVTLWICNISYATTIACVIGLTGLIPLVGIYV 278

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
              +   +L+  +  +A    +   +   I    + P +VG  + LP L  F  ++ G  
Sbjct: 279 GGLMGAVILLTISPMDALIYVIILEVLHQIESNVIYPKIVGNSVGLPGLWVFAAVIIGGS 338

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            MG+ G+ IG  L+A    +    +     + E +
Sbjct: 339 LMGVTGMIIGVPLVATCYKLLMTDVEERLASNEGL 373


>gi|328880350|emb|CCA53589.1| integral membrane protein [Streptomyces venezuelae ATCC 10712]
          Length = 371

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/354 (14%), Positives = 122/354 (34%), Gaps = 17/354 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFA---PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
                ++  +  V+L+ +   ++   P++ AL +   +WP+ + F+ +        A   
Sbjct: 21  SAEALLVALMAGVALWIVGRMWSVVWPLVVALFLTTLTWPL-TRFLRRHGWPPAVAAGAV 79

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           TVS + L    +  +      +  EL   VV   Q    +  W +  P  +   E+    
Sbjct: 80  TVSFVLLVAGIVALIAVPVASQSGELSRGVVEGIQR---LREWAAGPPLNIGEDEISGAL 136

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            +    ++    + +                       ++    +  +FFF +DG     
Sbjct: 137 DTAMARVQDSVGSMVTAVATGV---------GTVFSGLVTAFLALFLMFFFLKDGPRFVP 187

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L              +       + +       + I + +++G   W+  VP  + L V
Sbjct: 188 WLTRQLPGRLAVDVPVVVERSWYTLGAFVRSQAFVGILDAVLIGLGLWILDVPLVLPLAV 247

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +T + A +P  GA  +     +  L+   + +A  +     +   +     +P +    +
Sbjct: 248 LTFVSAFVPIVGALFAGLVAVLIALVSNGVTDALIVLAVIVVVQQLEGNVFQPMIQSRGL 307

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            L        +  G    G++G  +   + AL+AV+W      + E+  +  S+
Sbjct: 308 GLHAAVVLLAVTLGGSLAGIVGSLLAVPVAALVAVVWNYLREQLGEDSPEPESD 361


>gi|226310975|ref|YP_002770869.1| hypothetical protein BBR47_13880 [Brevibacillus brevis NBRC 100599]
 gi|226093923|dbj|BAH42365.1| conserved hypothetical membrane protein [Brevibacillus brevis NBRC
           100599]
          Length = 376

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 86/231 (37%), Gaps = 4/231 (1%)

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
              + + + L+      I + T +  N I           +   +     +  I+  FF 
Sbjct: 135 QLDQGYQEKLASTVGSAISTITNVGQNLIVKFLDGLKNLLLSLPNMATVSVISIMGAFFI 194

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            +D      +   L      +   +I   +   +         +      ++     +  
Sbjct: 195 SKDFSLWEARARRLLPTGVNSRLDQIFIDLRNALFGFVKAQLTLISLTAAIVIIGLLVMR 254

Query: 238 VPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCL-FLWGAIELFIVDKT 295
           V   + +G+IT ++ ++P  G    F    IY+  KGN      L  L+G + +F   + 
Sbjct: 255 VEYAITIGLITGLVDLLPYLGTGTVFVPWIIYMFFKGNYTMVIGLSILYGVVLIFR--QI 312

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           + P +V   + L  L T   L  G++  G LGL IGPV + +I  + K ++
Sbjct: 313 IEPKVVAENVGLDPLLTLVALFVGLQLFGFLGLIIGPVSLVMINALVKANV 363


>gi|317049091|ref|YP_004116739.1| hypothetical protein Pat9b_2883 [Pantoea sp. At-9b]
 gi|316950708|gb|ADU70183.1| protein of unknown function UPF0118 [Pantoea sp. At-9b]
          Length = 352

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 125/352 (35%), Gaps = 18/352 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +PQ I    I+    + L+F  G  AP+L A+++ +   WP     + +   S T
Sbjct: 10  RRRFSDPQAIGLVAILLAAFLILFFFSGLLAPLLVAVVLAYLLEWPTVR--LERVGCSRT 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           + + I  V    + +V +L +      +   L             +P  L+ +       
Sbjct: 68  WASSIVLVLFGGIVLVMVLIVAPVAWQQGINLTR----------DLPNMLNKLYLFAAGL 117

Query: 121 ELWTKHLSHPQSLKILSETFLK--TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                 L     + I+ E      T   + + +++    +  +   + ++ + + +FF  
Sbjct: 118 PKRYPALVDAGIIDIVVENLRSRLTGLGESLVKYSLASLVGLMTLMIYLVLVPLMVFFLL 177

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D   +   +  +           + + + + I +   G  +  +  G+V   A+ L G+
Sbjct: 178 KDKEQMLNAVRRVLPRNRGLAGV-VWQEMNQQITNYIRGKVLEMVAVGVVSWLAFLLLGL 236

Query: 239 PSHVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
              + L V+  +  +IP  GA +    V  + L   G   +   +F+   +   +    L
Sbjct: 237 NYALLLAVLVGVSVLIPYIGAMLVTIPVIGVGLFQWGLGSDFWTMFVVYLVVQGLDGNIL 296

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            P L    + L  L     +V      G  G+F    L  LI  + +     
Sbjct: 297 VPILFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVRAWPEE 348


>gi|300866882|ref|ZP_07111557.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300335132|emb|CBN56719.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 354

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/323 (17%), Positives = 129/323 (39%), Gaps = 19/323 (5%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           ++L+   + +      ++A ++ F   +P++  F+ +         V+     + + +V 
Sbjct: 26  LLLLVFEYFRSLITVFVTATVLSFLLDYPVH--FLRRYGVKRQQAVVLVLCLFLLILVVL 83

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
            + L    + ++ ELV+++          P W++           W K+ + P  L+  +
Sbjct: 84  AVTLAPIILGQLNELVTRL----------PSWINSGAEQFETLHNWAKNRNLPIDLRGFA 133

Query: 138 ETFLK--TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +   +  +  +  I        +      L ++  ++  F+    G  +   L       
Sbjct: 134 KQLSERFSTQLQSIIGQILTVVLGAAGSLLDLMITVVLTFYLLLHGQRLWDGLFQWFP-- 191

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
            P    +I   + +  ++ F+G   +A   GL +  A+ +  VP  +  G+   IM +IP
Sbjct: 192 -PELGSQIRESLRRNFQNYFIGQATLATFMGLSMTVAFLILQVPFGLLFGLAVGIMTLIP 250

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            GA +S + VS+ + +  N +    +     +   +++  + P L+GG   L  +  F  
Sbjct: 251 LGAGLSISIVSLLMALN-NFWLGMKVLAVATVLDQVIENGIAPRLLGGFTGLNPVWIFIS 309

Query: 316 LVGGVRTMGLLGLFIGPVLMALI 338
           L+   +  GL+GL +   +   I
Sbjct: 310 LLIATKVGGLIGLLVAVPIAGFI 332


>gi|167768068|ref|ZP_02440121.1| hypothetical protein CLOSS21_02612 [Clostridium sp. SS2/1]
 gi|167710397|gb|EDS20976.1| hypothetical protein CLOSS21_02612 [Clostridium sp. SS2/1]
          Length = 375

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/324 (13%), Positives = 106/324 (32%), Gaps = 6/324 (1%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL-FLFYYGML 87
            F      A II             K ++    L++I  +  +   I+ +   +    + 
Sbjct: 44  PFILGSCVAFIINVPMSFFERKLFYKLKKGKRSLSLIMAIVSIVGVILLVSRLIIPELVD 103

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            + +L + +    +    +              +   +       +     TFL+     
Sbjct: 104 TIFKLSNNIPEYVKEIQALLE--KTSMNKPMVHKYVNQITFDWDKISGELITFLQDGATS 161

Query: 148 FIPRFASRFG---MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            +    S         + + L  +F + AL    +    + + L +        Y  ++ 
Sbjct: 162 MLNSTVSAITDVVQFIVSFALGFVFALNALLQKEKLSMQVKKVLVAFLPERVAKYIVRVG 221

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
           R+      S   G  + A+  G ++ ++  L G+P  V + V   +M++IP         
Sbjct: 222 RLSNNAFSSFLSGQCLEAVILGCLIFASMKLLGLPYAVLIAVFIGVMSLIPIIGGFIGCW 281

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           V + L+   +   A    +   +        + P +VG  + LP +     +  G    G
Sbjct: 282 VGVLLIFMVDWKQAIIFIIMFVVVQQFEGNVIYPHVVGNSVGLPAIWVLVAVTIGGNIAG 341

Query: 325 LLGLFIGPVLMALIAVIWKESIMA 348
           ++G+       +++  ++ E +  
Sbjct: 342 IVGMIFSIPFCSVLYQLFSEIVNK 365


>gi|229006725|ref|ZP_04164359.1| hypothetical protein bmyco0002_36270 [Bacillus mycoides Rock1-4]
 gi|228754586|gb|EEM03997.1| hypothetical protein bmyco0002_36270 [Bacillus mycoides Rock1-4]
          Length = 315

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/311 (16%), Positives = 112/311 (36%), Gaps = 11/311 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L A  I +   P+      +            T++++ ++I+    L Y       
Sbjct: 6   ITPFLIACFIAYLLHPLIEKLYKEGMPR--------TLAILLIYILFFGGLGYGIYKGTP 57

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            +++++   N+     P+++      M      T +       K+          I  + 
Sbjct: 58  VVIAQLQEINK---QFPQFMKMYDSWMDGVTEQTDNFPSFIHEKVKQIFVGIEMKIQALL 114

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     LD  L I  +   +F+  +D               + +  + +++ + K 
Sbjct: 115 NKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHVFWKFVPSKWRSTGQVLAKEIDKS 174

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI     ++ + 
Sbjct: 175 LGSYIRGQLFVCLVLGGVSALSFWFIGMKYPLLLGIIVGVTDIIPYFGPILGAIPTLMIA 234

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +        +  AI  F+    L P++VG  +++  +     L+ G    G++GL I
Sbjct: 235 ATVSTNLFIKAGIALAILQFVESNILSPYIVGKSLRMHPVIIMLALLIGGEIGGIVGLLI 294

Query: 331 GPVLMALIAVI 341
              ++A+I  +
Sbjct: 295 AVPILAVIRTV 305


>gi|188579575|ref|YP_001923020.1| hypothetical protein Mpop_0304 [Methylobacterium populi BJ001]
 gi|179343073|gb|ACB78485.1| protein of unknown function UPF0118 [Methylobacterium populi BJ001]
          Length = 650

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/351 (13%), Positives = 109/351 (31%), Gaps = 16/351 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G++   +  +++ +LY+ +  F P++ A+++ F   P+  SF+ +         +IA +
Sbjct: 22  RGLLTLAVGVVVIAALYYGREVFIPLVLAILLSFVLAPV-VSFLRRMYLGRVPSVIIAVL 80

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + + +     L         +L        Q    +   L      +        H +
Sbjct: 81  LALSIILGIGAVLGTQVASLATDLPRYQTTVQQKLSGLQEGLLGRANALLQRINHQVHDA 140

Query: 129 HPQSLKILSETFLKTNGIDFIPRF-------------ASRFGMIFLDYCLSIIFMIIALF 175
             ++    +       G     +              A       ++   ++  +++ + 
Sbjct: 141 SQKASAAGTTAERSVGGETPKAQLVRVQEPDPSPLTLAHNILGPIVEPLTTVGIVLVVVV 200

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F       +  +L  L                   + + FL    +    G+++G   W 
Sbjct: 201 FLLMQREDLRNRLIRLFGSRDLHRTTVAMDDAASRLGTYFLAQLGMNAAFGVLIGLGLWA 260

Query: 236 AGVPSHVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
            GVPS +  GV +A+M  +P           V++   +      A        I   +  
Sbjct: 261 IGVPSPILWGVFSALMRFVPYIGAFISGLLPVALAAAVDPGWSMAIWTAALFLIAEPLFG 320

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             + P L G    L         +      G +GL +       + V+ + 
Sbjct: 321 HVIEPLLYGHSTGLSPFAVIVSTLFWGFLWGPVGLILATPFTVCLVVLGRH 371


>gi|160933907|ref|ZP_02081294.1| hypothetical protein CLOLEP_02769 [Clostridium leptum DSM 753]
 gi|156866580|gb|EDO59952.1| hypothetical protein CLOLEP_02769 [Clostridium leptum DSM 753]
          Length = 420

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/350 (12%), Positives = 115/350 (32%), Gaps = 12/350 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTS-------WPIYSSFISKKEE--SSTFLAVIATVS 69
            I  ++     FF  +  A ++           +   +    +  +         ++ ++
Sbjct: 45  FITGAISLAAPFFIGIAIAFVVNVLLKFYEEKAFAFLNKRNGRIWKKIRRGVCIFLSFLT 104

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + +    +LF+    +  +K L           +      + +      ++     L  
Sbjct: 105 FVLVIGGIILFVVPELVNSVKVLTDNAPSYINRLMQET---TKLLEKWNVTQEQINALKL 161

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S  +   T + TN +  +               +S IF +  L    +   ++ + + 
Sbjct: 162 DWSSILTQATQVTTNFMGSVFNITVNVANGIFIMAMSFIFCMYMLVNKEKLTTNLKRVMY 221

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +   +        ++ +  K+  +   G    A     ++     +  +P  + +  I A
Sbjct: 222 AYLPNRVAKRTIDVAILSNKIFSNFVRGQLTEACIWFFLIYLGMTVLRLPYALLISAIVA 281

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           + ++IP   P      + ++L+  N ++     ++  I   I    + P +VG  I LP 
Sbjct: 282 LCSLIPIIGPYISMFTAGFILLLVNPWHTLTYLIFFLILQQIEGNLIYPRVVGTSIGLPG 341

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +     ++      G++G+ +G    ++I  + +    A    K   +  
Sbjct: 342 IWVLLAIILCGNLFGMVGILLGIPTFSVIYTLLRGDTSARLRKKRLTTEQ 391


>gi|145299611|ref|YP_001142452.1| permease PerM [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142852383|gb|ABO90704.1| permease PerM [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 356

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/342 (14%), Positives = 114/342 (33%), Gaps = 14/342 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +  ++++      L+   G  AP+L AL++ +   WP+    + +   S      +
Sbjct: 15  DPDAVTLFLLLVACFAVLWLFGGLLAPLLVALVMAYLLEWPVSR--LQRAGLSRALATSL 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + + ++ LL L    + +   L  +      H     R L +    +    L   
Sbjct: 73  VLLLFIAVTVMALLGLIPTLVSQGINLAKESPSMLAHVQDYVRTLPEKYPEVIDVTLVET 132

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            + + +   +     L +  +  +           +   + +I + + +FF  +D   + 
Sbjct: 133 IIDNIRQRILSGGEHLVSASLSSLV--------NVVAILIYLILVPLMVFFMLKDKQELM 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L            +    +  ++I +   G  I  +  G+     + L G+     L 
Sbjct: 185 GGLRRFLPRNRTLVNRVWVEMNDQII-NYIRGKVIEILIVGVATYIPFALMGLRYSALLA 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V      +IP  GA      V++  L + G     T L +   +   +    L P L   
Sbjct: 244 VAVGFSVLIPYIGAAAVTVPVAMVALFQWGLTPEFTWLMVAYLVIQALDGNLLVPLLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            + L  +     ++      G  G+F    L  L+  +    
Sbjct: 304 AVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVINAW 345


>gi|54027201|ref|YP_121443.1| hypothetical protein nfa52270 [Nocardia farcinica IFM 10152]
 gi|54018709|dbj|BAD60079.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 390

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/335 (13%), Positives = 112/335 (33%), Gaps = 16/335 (4%)

Query: 20  ILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +++  + L+   G    ++ +L + F   P  +   ++          +  + ++ + + 
Sbjct: 27  LVLGFWVLQRLQGLLTVLMISLFLAFAIEPAVNWLAAR-GMRRGPATGLVFLGLVAVVVA 85

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
               L    + ++  LV            V  W++       + E   K+ +        
Sbjct: 86  FFGALGALLVDQVTTLVQNAPDY---ADQVVDWINRTFRTQLSGEDIEKYATE---WSDK 139

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            E +L           A   G   +      + +++  F+F  DG      + SL     
Sbjct: 140 LEGYLVG-----FAGNAWGIGTAAVGALFQALGVLLFTFYFAADGPRFRNAVCSLLPPRR 194

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA-MIP 255
             +  +   I  +          ++A+   +   +A  + GVPS +AL +   +++  IP
Sbjct: 195 QVHVLRAWDIAVEKTGGYIYSRGLLALCSAIAHYAALRVLGVPSALALALWVGVVSQFIP 254

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                   A+ I + +  +  +A  L  +  +     +  L+P +    + +     F  
Sbjct: 255 TVGTYLAGAIPIVVALVHDPGSALWLLGFIVLYQQFENYVLQPRITATTLDMHPAVAFGA 314

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++ G   +G  G  +   + A +       +   +
Sbjct: 315 VLAGAALLGATGALLAIPVTATVQAFAGAYVRRYE 349


>gi|311113400|ref|YP_003984622.1| hypothetical protein HMPREF0733_11731 [Rothia dentocariosa ATCC
           17931]
 gi|310944894|gb|ADP41188.1| conserved hypothetical protein [Rothia dentocariosa ATCC 17931]
          Length = 440

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/317 (12%), Positives = 100/317 (31%), Gaps = 8/317 (2%)

Query: 37  ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV 96
           A+ I     PI     S      +   VI  +S   +    ++++      +    V + 
Sbjct: 132 AIFIALGLDPIVRKLES-FGVKRSAGVVIVVLSFAAIISGLVVWIVPIISAQASSFVYRA 190

Query: 97  VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
               Q  I        I   +  ++    +      +    E+   ++ +          
Sbjct: 191 PAIYQDFIDS-DTFKRIDDVLHVNDWVNNN------VPKFLESLTSSSAVGGFMSNLITA 243

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
           G          I ++    +F     +I      L         ++++  +   + +  +
Sbjct: 244 GSTIAQILTGTIIVLFLSLYFLSSMRTIKAWGSRLAPASKRERVEELTERITGAVGNYVM 303

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIF 276
           G  ++A+           + G      + V   I+A IP    ++   +   +L+     
Sbjct: 304 GQGVVAVLNATFALITMIILGFSFPQLVAVFVLILAFIPLVGGVAALVLVSLILLTQGWQ 363

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            +    +   I L I    + P ++   + +P       +  G    G+LG  I   + A
Sbjct: 364 MSVTFAIAYFIYLQIEAYVISPRIMSKAVSVPGGVAIIAVAAGGALWGVLGALIAIPVAA 423

Query: 337 LIAVIWKESIMAIKENK 353
            + ++ KE  +  ++++
Sbjct: 424 SLLILVKEVFIPRQDHR 440


>gi|289578242|ref|YP_003476869.1| hypothetical protein Thit_1040 [Thermoanaerobacter italicus Ab9]
 gi|289527955|gb|ADD02307.1| protein of unknown function UPF0118 [Thermoanaerobacter italicus
           Ab9]
          Length = 339

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/333 (15%), Positives = 125/333 (37%), Gaps = 24/333 (7%)

Query: 10  GIMRWMIMFIILVSLYFLKGFF----------APVLSALIIGFTSWPIYSSFISKKEESS 59
            + +  + F+I+ ++  L  F           +P   A ++ +   P    F + K  S+
Sbjct: 2   QVKKIYLFFLIIAAIGLLYFFIKNWVSIKNILSPFFIAGLVAYLLNP-MVKFFNSKGLST 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
            F  ++  + V    ++   ++F   + EM   ++ +          P ++ ++   +  
Sbjct: 61  FFSILLVFLIVTLGILIFSFYIFPLMINEMIAFITMI----------PFYIEELQNILIQ 110

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPR--FASRFGMIFLDYCLSIIFMIIALFFF 177
            +        P   + + +  L T    F  R   A +  +  L   +  I + I  F+F
Sbjct: 111 LKF-NYFSYLPPQFEKVLDKNLNTLNNLFASRVDMAFKSTVAILKNVIDAILVPIITFYF 169

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            +D     ++++ +    +   +  + R + K++         ++I  G++      L  
Sbjct: 170 LKDKNLFKKEIEKIIPSKYHCSFFTLLRKIDKILSKYIRAQIYLSIFVGILTSIGLSLIK 229

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           +     +G++T ++ +IP   PI     ++ L    ++       +   +   I +  + 
Sbjct: 230 IKYAFLVGLLTGVLNIIPYIGPILSIIPAVLLGFLDSLSKGIWALVVCLLVQQIENAFIT 289

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           P ++   + L  +   F L+ G  T   LG FI
Sbjct: 290 PKILSDSVGLHPITVIFSLIAGGGTFWHLGAFI 322


>gi|318059209|ref|ZP_07977932.1| integral membrane protein [Streptomyces sp. SA3_actG]
 gi|318079386|ref|ZP_07986718.1| integral membrane protein [Streptomyces sp. SA3_actF]
          Length = 367

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/338 (15%), Positives = 116/338 (34%), Gaps = 21/338 (6%)

Query: 11  IMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           ++  ++  +  V ++    LK    P+L A++      P+YS  + +     +  A I  
Sbjct: 27  VLLLLVTGVAAVGIWLCVELKTAVTPILLAVLGTALLRPLYSLLVHRVHVQRSLAAGITC 86

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
            +V+         +    +   ++++  +    +                W     T   
Sbjct: 87  AAVVAAVGGAGYIVTSAIVDNGQQILDSIRSGIED------------AASWVGAEDTSLD 134

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               + + L   F  T     I   +     +   +  + +  ++ +FFF RD     + 
Sbjct: 135 DITHNARQLLNKFGGTAATGVINGLS-----VVGSFVATAVLALLLMFFFLRDAGRALRG 189

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L  L         + ++R   + +     G TIIA+ +   +     + GVP  + LG +
Sbjct: 190 LRELSPGDSSDLVEAMARRAYQAVAGFMHGTTIIALIDATFITIGLLVLGVPGALGLGAL 249

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + A IP  GA +S     +  L       A  +         +    L+P +    ++
Sbjct: 250 VFLGAYIPYLGAFLSGAVAILVALADRGFVIALWVLGVVLAVQVLEGHLLQPVVQSRTVQ 309

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           +        +  G    G+LG+ +   L A    I++E
Sbjct: 310 MHPAVVMVTITAGASLAGILGMLLAVPLTAAAFGIFRE 347


>gi|262404511|ref|ZP_06081066.1| permease PerM [Vibrio sp. RC586]
 gi|262349543|gb|EEY98681.1| permease PerM [Vibrio sp. RC586]
          Length = 356

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/350 (16%), Positives = 120/350 (34%), Gaps = 14/350 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P       I+    + +YF     AP+L A+++ +   WP+    +S+     T   +I
Sbjct: 15  DPHAASLVAILLFGFIIIYFFGNLIAPLLVAIVLAYLLEWPVAQ--LSRLRIPRTLAVII 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
                  L I+ +  L      ++  L++ V             L +    +   E+   
Sbjct: 73  VITMFTGLMILAVFGLVPTIWKQVGNLINDVPNMYSGTQKFITTLPERYPELAHFEIVES 132

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            +S+ ++  +     +    +  +   A+          + +I + + +FF  +D   + 
Sbjct: 133 VISNAKNKVLGMGETVVKGSLASLVSLAT--------LGVYLILVPLLVFFLLKDKQEML 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +          K+   + + I +   G  +  +  G V    + +  +   V L 
Sbjct: 185 RMASGILPR-NRKLATKVWEEMNQQISNYIRGKVLEIVIVGTVSYITFAILDLRYSVLLA 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V   +  +IP  GA      V+I  L + G       L +   I   +    L P L   
Sbjct: 244 VAVGLSVLIPYIGAAAVTVPVAIVALFQWGLTPEFYTLLIAYGIIQALDGNVLVPVLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            + L  +     ++      G  G+F    L  L+  +WK       E++
Sbjct: 304 AVNLHPVAIIIAVLVFGGLWGFWGVFFAIPLATLVKAVWKALPSLDDESE 353


>gi|312141448|ref|YP_004008784.1| integral membrane protein [Rhodococcus equi 103S]
 gi|311890787|emb|CBH50106.1| putative integral membrane protein [Rhodococcus equi 103S]
          Length = 383

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/310 (13%), Positives = 107/310 (34%), Gaps = 13/310 (4%)

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS 111
             ++    +   ++A V  + +    L F+    +  + +L  +   +         WL+
Sbjct: 56  QHRRGVPRSAAVLVAVVGTIGIVGAILSFVVQQFVEGLPDLSDQFTTSVTK---AQEWLT 112

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
             P      ++     +  ++++   E              A+  G IF    L+    +
Sbjct: 113 QGPLHFSEDQIRHAGDNVVKAIQSNQEALTSGA-----LTTATVIGEIFAGAFLT----L 163

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
             L FF   G  + + +  +         +   R     +         +A  + + +G+
Sbjct: 164 FTLVFFLYGGNQVWEFVTRIIPKNTRGRVRLAGRQGFNSLVHYTRATVAVAAVDAIGIGA 223

Query: 232 AYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
              + GVP  + L  +  + A IP  GA ++     +  L+   +  A  +       + 
Sbjct: 224 GLAILGVPLALPLASLVFVGAFIPIVGAFVTGFLAVLVALVTKGLLTALIVLGIIVGIMQ 283

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +    L+P L+G  ++L  L     +  G+   G++G  +   ++A +    +       
Sbjct: 284 LEGHVLQPLLLGRAVRLHPLAVVLAITTGIVLAGIVGGLLAVPIVAFLNTAIRSLCAGDT 343

Query: 351 ENKEKISSNF 360
           +  E++  + 
Sbjct: 344 DEAEEVYESL 353


>gi|258650461|ref|YP_003199617.1| hypothetical protein Namu_0195 [Nakamurella multipartita DSM 44233]
 gi|258553686|gb|ACV76628.1| protein of unknown function UPF0118 [Nakamurella multipartita DSM
           44233]
          Length = 486

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/339 (15%), Positives = 109/339 (32%), Gaps = 15/339 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I +I  + L  ++     +  A ++     P+ S+   +       +A          
Sbjct: 162 VLIAYITFLVLDSIRDTLVMIAIATLLAIGLDPLVSAMTKRGLRRGAGVA---------- 211

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +V L  L          +   +         VP  ++D+        L  +        
Sbjct: 212 -VVFLGLLLVIAAAIYAIIPPIINEVGSFVATVPTLINDLQTNDTVQGLDQRFGLLEALR 270

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                  L +     I   +     +F D    ++ ++I   +F      I      L  
Sbjct: 271 NSNIVQSLGSGAAGGILSASFTVATVFAD----LLIVLILTLYFLAGFPRIKAAGYRLVP 326

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                    +   + K +     G TIIAI  GLV G    + G+P   A+G+  A++  
Sbjct: 327 ASRRVRVSDLGDRILKQMGGYLSGATIIAIQAGLVAGIFSSIIGLPYPWAIGLGAAVLDF 386

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   PI        +     +       ++   +       L P ++   + +      
Sbjct: 387 IPVVGPIIVGVSITLIGFTQGLGIGIISGVFYLCQHLFEAYWLYPRVMRRTVNISTGGVV 446

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             ++ G   +G+ G  +   + A I +I +E IM ++E 
Sbjct: 447 VAILIGASLLGVTGAILAVPVAAAIMLIVREVIMPMQER 485


>gi|113970680|ref|YP_734473.1| hypothetical protein Shewmr4_2345 [Shewanella sp. MR-4]
 gi|113885364|gb|ABI39416.1| protein of unknown function UPF0118 [Shewanella sp. MR-4]
          Length = 366

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 102/303 (33%), Gaps = 12/303 (3%)

Query: 45  WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
           WP+      K   + T  A +  V  + + +V    L      +   L++ +      G+
Sbjct: 54  WPVAQML--KLGINRTTGASLVLVLFLGIVVVLTFGLIPSVWRQGVSLMTDLPSMIDKGL 111

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
              + L+       +S+           +    +  L T  +  I +    +    L   
Sbjct: 112 QTLQGLATQYPQFVSSDQLNL-------MVAELKKLLDTQHLLDIAKQLIGYSASLLVLM 164

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
           +  I + + +FFF +D   +                +K+   + + I +   G  I  + 
Sbjct: 165 VYAILVPLLVFFFLKDKDQLISGSKRFFPT-NRQLARKVWFEMHQQIFNYIRGKVIEIVI 223

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFL 283
            G+     +   G+     LGV+T +  +IP  GA +    +++    +    +     +
Sbjct: 224 VGVASYIFFAFMGLRYSALLGVLTGLSVLIPYVGATLVTLPITLVAFFQWGFSSEFGYLM 283

Query: 284 WGAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            G   +  +D   L P L    + L  +     ++      G+ G+F    L +L+  + 
Sbjct: 284 LGYGIIQALDGNVLVPILFSDAVDLHPVIIIAAVLVFGGLWGVWGVFFAIPLASLVKAVI 343

Query: 343 KES 345
              
Sbjct: 344 NAW 346


>gi|254561252|ref|YP_003068347.1| permease [Methylobacterium extorquens DM4]
 gi|254268530|emb|CAX24487.1| putative permease (PerM family) [Methylobacterium extorquens DM4]
          Length = 370

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/310 (13%), Positives = 106/310 (34%), Gaps = 14/310 (4%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I+ +++  LY L+    P ++ L + +   P+                + AT+ ++  F+
Sbjct: 11  ILAVVVFLLYELREVMLPFVAGLALAYLLDPLADRLERLGLGR-----LAATLLILAGFV 65

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V  + L    +      ++ +V +    +   + +     G     +    + +   L+ 
Sbjct: 66  VGFVVLLIIVVPLAAGQIASLVNSLPTMVGRLQSILVERAGPLLQRIGGTEVVN--ELQS 123

Query: 136 LSETFLKTNGIDFIPRFASRFG--MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
              T +   G  F+    S +      +     ++   +  F+   D   +   LD    
Sbjct: 124 SVGTLVGQGGAWFLAFLKSLWTGSQALVSIASLLVVTPVVAFYVLHDWDRMIAALDGWVP 183

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  ++++  +   +     G +++ +  G       +L G+   V +G+I+  +  
Sbjct: 184 PRHRPTARRLAGEIDGAVTGFVRGQSLVCLILGSFYAVGLFLVGLNFGVLIGMISGFLTF 243

Query: 254 IPG-----GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           IP      G  +S     +     G+  +         +  F+    + P LVG  + L 
Sbjct: 244 IPYVGTLTGFLLSVGVALVQWWPSGDWLHIGLTVGVFLVGQFLEGNVISPKLVGDSVGLH 303

Query: 309 FLPTFFGLVG 318
            +   F L+ 
Sbjct: 304 PVWLMFALLA 313


>gi|110802261|ref|YP_697882.1| hypothetical protein CPR_0554 [Clostridium perfringens SM101]
 gi|110682762|gb|ABG86132.1| putative membrane protein [Clostridium perfringens SM101]
          Length = 366

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/336 (16%), Positives = 116/336 (34%), Gaps = 4/336 (1%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           ++ +++ +     P L A II +   PI + F  K + S     VI  +  +    +   
Sbjct: 34  VMSAIHTILAVLLPFLLAFIIAYILNPIVNLFSKKFKLSRGISIVITYLIFVTSISLAAT 93

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ-SLKILSE 138
           +L       + EL+  +         V    ++I       E    +L H   +  I   
Sbjct: 94  YLLPKLYTSLIELIDNIPAFTN---YVQNLFTEIMASFKVPEGINSYLPHGDTNKLITFI 150

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             + T   +++   A       +++    +  I  L    +     S+    +       
Sbjct: 151 GSMVTLLSNWLLDAAISLTSSIINWIFGFLISIYVLVDKDKFLAHSSKVTRIIFGKNLGD 210

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              +  +I+ + I +      I ++  GL+      +      + L V+  I  MIP   
Sbjct: 211 EILEFIKILNEKIGTYVGIKAIDSLIIGLLAFVGLTVIKSEYALLLSVLVGITNMIPYFG 270

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P     V  ++ +  +   A  + ++  I        L P L+G  + L       G+  
Sbjct: 271 PFIGMVVGFFINVFISPMKAVIVLIYLFILQQFDAWYLDPKLIGNRVGLSPFLVILGVTL 330

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G    G +G+ +G  +M++I +   + I   +   E
Sbjct: 331 GGAIYGPIGMILGSPVMSVIRIYTLKLIKKFEYRAE 366


>gi|168212573|ref|ZP_02638198.1| putative membrane protein [Clostridium perfringens CPE str. F4969]
 gi|170715715|gb|EDT27897.1| putative membrane protein [Clostridium perfringens CPE str. F4969]
          Length = 377

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/333 (13%), Positives = 113/333 (33%), Gaps = 8/333 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-------STFLAVIATVSVMC 72
           I+  LY   G   P +  + I F               S        +F   +  +  + 
Sbjct: 31  IMNFLYKFLGILKPFIWGIAIAFILNIPVKLIEKNLGNSKFFKGMKRSFSITLTFLFFIL 90

Query: 73  LFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              + +LF+    +  +  L++ +    +Q    +     +        +     L +  
Sbjct: 91  AITLFILFVIPQLLSSISTLMNSIPEYLSQFEKFLEVNAINNSQSQVMMQNIINELLNMW 150

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              +   + +    + ++  F        +++ L++I  I  L         +   + + 
Sbjct: 151 KEILKVTSQIVGTSLGYLLDFTLGITYGVINFFLALILAIYMLASKEILISQLKLIIYAF 210

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                     ++  +  ++     LG    A+  G++      +  +P  + + V+  + 
Sbjct: 211 VSKNKADRIIELGNMCNEMFSKFILGQCTEALVIGVLCFIGMIILKMPYALLISVVIGVT 270

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           A+IP       T  S ++++  +   A    ++  +   +    + P +VG  I L  L 
Sbjct: 271 ALIPVFGAFLGTIPSAFIILIIDPIKALWFIIFIIVLQQLEGNLIYPRVVGSSIGLSALW 330

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             F ++ G    G++G+ IG  +  ++  I K 
Sbjct: 331 VMFAMIVGGSLFGIIGMLIGIPIFGVVFKILKR 363


>gi|229846326|ref|ZP_04466434.1| hypothetical protein CGSHi7P49H1_06635 [Haemophilus influenzae
           7P49H1]
 gi|260582877|ref|ZP_05850662.1| lipoprotein NlpI [Haemophilus influenzae NT127]
 gi|229810419|gb|EEP46137.1| hypothetical protein CGSHi7P49H1_06635 [Haemophilus influenzae
           7P49H1]
 gi|260094090|gb|EEW77993.1| lipoprotein NlpI [Haemophilus influenzae NT127]
          Length = 349

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/341 (15%), Positives = 117/341 (34%), Gaps = 11/341 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             + +PQ +    I+    VS+YF     AP+L AL++ +      +      +      
Sbjct: 11  RRLSDPQAMGLLAILLFGFVSIYFFGDLIAPLLIALVLSYLLEIPINFLNQYLKCPRMLA 70

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++   S + L  V  L L      +   L+S +            WL ++P        
Sbjct: 71  TILIFGSFIGLAAVFFLVLVPMLWNQTISLLSDLPAMFNKS---NEWLLNLPKNYPELID 127

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           ++   S   S++     F ++     +        M  +   +    + + +FF  +D  
Sbjct: 128 YSMVDSIFNSVREKILGFGESAVKLSLASI-----MNLVSLGIYAFLVPLMMFFMLKDKS 182

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + Q +           +K + + + + I +   G  +  +   L+    + + G+   +
Sbjct: 183 ELLQGVSRFLPKNRNLAFK-VWKEMQQQISNYIHGKLLEILIVTLITYIIFLIFGLNYPL 241

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFL 300
            L     +  ++P  GA I    V++  L +  I       +       ++D   L P+L
Sbjct: 242 LLAFAVGLSVLVPYIGAVIVTIPVALVALFQFGISPTFWYIIIAFAVSQLLDGNLLVPYL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
               + L  L     ++      G  G+F    L  L+  +
Sbjct: 302 FSEAVNLHPLIIIISVLIFGGLWGFWGVFFAIPLATLVKAV 342


>gi|15895697|ref|NP_349046.1| permease [Clostridium acetobutylicum ATCC 824]
 gi|15025448|gb|AAK80386.1|AE007743_8 Predicted permease [Clostridium acetobutylicum ATCC 824]
 gi|325509847|gb|ADZ21483.1| permease [Clostridium acetobutylicum EA 2018]
          Length = 339

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 58/346 (16%), Positives = 118/346 (34%), Gaps = 24/346 (6%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE----SSTFLA 63
            +   R   + ++    YF +     +L   I+ +    ++   +S   +        +A
Sbjct: 10  KESFKRGAFLVLLAAFFYFCRSIMNFILLTFIVTYLISSLHGFIVSNLRKYIKVREGLIA 69

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++  V ++ + ++         + E   +V++                     +  S+L 
Sbjct: 70  LLLYVLIIAVIVLVFYNYVPVIVRETTNIVNQATNFYNT--------------IDTSDLG 115

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG-- 181
           T        +  L        G+ +I  FA  FG + L+  L+ +    +LFF    G  
Sbjct: 116 TLGKYIQPMITKLDIGSYTKQGLSYIIEFAKNFGKVSLNLFLAFVL---SLFFVLEKGTI 172

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               ++ +         Y+                   +IAI   ++   A  + G P+ 
Sbjct: 173 KKFGKKFEKSKLSTMYEYFVYYGNNFLNSFGKVIKAQILIAIVNAVLSSIALAIMGFPNL 232

Query: 242 VALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           + LG +  ++++IP  G  IS   +S              + L   +   I    L P L
Sbjct: 233 MTLGFMIFVLSLIPVAGVIISLVPLSFIAFNINGFTEVIYVILMVVVIHCIESYFLNPKL 292

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           +    KLP   TF  L+     MG  GL +G  L   +  +++  +
Sbjct: 293 MSSKTKLPIFFTFIILIVSGDFMGTWGLLLGIPLFMFLLDVFEVKV 338


>gi|162147067|ref|YP_001601528.1| hypothetical protein GDI_1272 [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161785644|emb|CAP55215.1| putative membrane protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 439

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/348 (15%), Positives = 122/348 (35%), Gaps = 7/348 (2%)

Query: 1   MRETMLNPQGI-MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           +R +  +PQ I +  + +  +  +LYF      P++ AL++            ++     
Sbjct: 56  VRRSRFDPQTICLLILTVLAVFYTLYFAAAIILPIVLALVVNLLLSAPMRVLHTRLHLPK 115

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
           T  A++  + V  +       +       +      +     H   + R +  I      
Sbjct: 116 TLSALVLILGVFGVVGAIGTAISVPAAGWIARAPQTMAALQTHLAVLHRPIQMIQAANDR 175

Query: 120 SELWTKHLSHPQSLKILSETFL---KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
            E +   +S  Q      +  L    ++    +  F S   +    +   +  M++ LFF
Sbjct: 176 IENFLSVVSGRQGGGGGGQVVLLAPSSSPGGGLGTFGSSVLLGTRAFVGQLFTMMLMLFF 235

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
               G S+ ++   +           +I+  + + +      +TII +  GL      W+
Sbjct: 236 LLAQGDSLLRRFVEIMPTFADKRRAVQIAYQIERNVSLYLTTITIINVLVGLANMLQCWV 295

Query: 236 AGVPSHVALGVITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
            G+P+ +  GV+  ++  IP   P+        + L +  +   A            +  
Sbjct: 296 FGMPNPLLWGVLAFLLNYIPIIGPLTGIVIYFVVSLFVFPSALQALLPPTVYLCIHLMEG 355

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +T+ P ++     L  +     L+      G+ G F+   ++A+  +I
Sbjct: 356 ETITPMVLARRFTLNPVLVMGSLMFWDWLWGVWGAFLSVPMLAVFKII 403


>gi|168187612|ref|ZP_02622247.1| permease [Clostridium botulinum C str. Eklund]
 gi|169294517|gb|EDS76650.1| permease [Clostridium botulinum C str. Eklund]
          Length = 368

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/340 (15%), Positives = 118/340 (34%), Gaps = 9/340 (2%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +    L  +     P   A  I +   P+   F  K      F  +I  + ++    + +
Sbjct: 30  VFASGLSIVISILTPFFWAFGIAYILNPLMLYFEKKFNLKRCFSILIVFLLLIGFITLTV 89

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
             +    +  + +L++ + +     I    W          S      L    +  + + 
Sbjct: 90  TIISPAIINNVGKLLNDMPIY---VIKTQAWFYTTINKFNLSN--NTTLIQFANKGLTNI 144

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ----QLDSLGEH 194
           T   T+ +      A    + F    L +IF  I   +  +D  S  +     L  + + 
Sbjct: 145 TTTLTDSLKSFLNVALSNAIDFTSSFLKMIFGFIISVYILKDKESFQKNAKNFLYCVFKK 204

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                +      V  +     +G +I ++  G++      +   P  + + ++  I  MI
Sbjct: 205 ESVDSFLTFGNEVNIIFSQYIIGKSIDSLIIGILCAIGLAILQTPYVLLISLLVGITNMI 264

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P   P      ++ + +  +   A  + L+  +        L P ++G  + +       
Sbjct: 265 PYFGPFIGMIPAVLITVFYSPIKALWVLLFILVLQQFDGWVLGPKILGDKVGVSPFWIIL 324

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            ++ G  T G+LG+F+G  ++A+I  + +  I    ++K 
Sbjct: 325 AILVGGGTFGVLGMFLGVPIIAIIKTLLQRFITRRLKSKN 364


>gi|269118864|ref|YP_003307041.1| hypothetical protein Sterm_0225 [Sebaldella termitidis ATCC 33386]
 gi|268612742|gb|ACZ07110.1| protein of unknown function UPF0118 [Sebaldella termitidis ATCC
           33386]
          Length = 345

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/320 (13%), Positives = 101/320 (31%), Gaps = 16/320 (5%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P +S+ II +   P       K   +     VI     +   +  ++ +    + +  
Sbjct: 42  LVPFISSFIIVYCLMPFIDVLSKKLRINKKISIVIVFSIFILFLLYIVISILPLVIKQFN 101

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L+   V                      +E         +S+      +L +N ++ I 
Sbjct: 102 GLIRYFVNNQGQ------------IQKEINEFLDGTNIDLKSVVGKVREYLFSNSMNLIN 149

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              + F  +F    ++ IF ++ LF +     SI   L              + + +   
Sbjct: 150 SSIALFSGLFSFMFMTPIFTVMLLFSY----DSIKTGLRKSLIRNKKRNILPLLKDIDDA 205

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           +        +     G +    ++   V       +I  +  +IP   P       +   
Sbjct: 206 VGKYIKVTLLDCFIIGTLSSIVFYFLKVDYMQLFSIIIGVGNLIPFIGPFISIVPVLIYA 265

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              ++     + +   +   I    ++P+L    + +  + T   ++ G    G++G FI
Sbjct: 266 ATKSLNLFISILVIITVLQGIEANIVKPWLTSKSVNIHPITTLLVILIGGSLFGIIGAFI 325

Query: 331 GPVLMALIAVIWKESIMAIK 350
              +  +I +I++     IK
Sbjct: 326 AIPVYIIIKLIFQFYRKKIK 345


>gi|126698629|ref|YP_001087526.1| hypothetical protein CD1045 [Clostridium difficile 630]
 gi|255091987|ref|ZP_05321465.1| hypothetical protein CdifC_04920 [Clostridium difficile CIP 107932]
 gi|255305971|ref|ZP_05350143.1| hypothetical protein CdifA_05210 [Clostridium difficile ATCC 43255]
 gi|255313721|ref|ZP_05355304.1| hypothetical protein CdifQCD-7_05208 [Clostridium difficile
           QCD-76w55]
 gi|255516403|ref|ZP_05384079.1| hypothetical protein CdifQCD-_04772 [Clostridium difficile
           QCD-97b34]
 gi|260682669|ref|YP_003213954.1| hypothetical protein CD196_0922 [Clostridium difficile CD196]
 gi|115250066|emb|CAJ67886.1| putative sporulation integral membrane protein [Clostridium
           difficile]
 gi|260208832|emb|CBA61754.1| putative membrane protein [Clostridium difficile CD196]
          Length = 350

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/318 (15%), Positives = 108/318 (33%), Gaps = 4/318 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           + I  ++ + +Y    + AP     II     PI     +K   +     ++ +   + +
Sbjct: 19  FCIYTLLFIFIYKAFPYIAPFFLGAIIALMINPISQKLENKFRINKGISTLVLSFLAVAI 78

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
                  +    M E+   ++ +    +       +  +       S     +    Q +
Sbjct: 79  VSTVTTIIVINSMKELMGFLNNISANPEDISNTIMYFLNKINDFMKSFQEIANFDVEQLV 138

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
              S   ++      +               + II + IA +F  +D   I     ++  
Sbjct: 139 NKFSGEVMQIT--KNLLTSILGLATSIPYIIIFIITLFIATYFIAKDLDKIENSFYNMFT 196

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  K + +     +       TI+       +  ++ L G+   + +G + A+M +
Sbjct: 197 VDVRKKVKNVKKEAGLSLVGYIRAYTILMAITFFAIWGSFALFGLKYGLIVGFVGALMDL 256

Query: 254 IPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP    I  +  V +Y  +  N F A  + +     L ++ + L P LV   + L  L T
Sbjct: 257 IPFLGIITIYLPVIVYYFLIKNYFIAISMTVI-FFVLSLIREILEPKLVSVNVGLNPLAT 315

Query: 313 FFGLVGGVRTMGLLGLFI 330
              +  G++  G++G+  
Sbjct: 316 LAAIFIGIQVKGIIGVIF 333


>gi|220918636|ref|YP_002493940.1| protein of unknown function UPF0118 [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219956490|gb|ACL66874.1| protein of unknown function UPF0118 [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 412

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 80/210 (38%), Gaps = 1/210 (0%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +  F+       +     ++ + +   F   D   I +  +++    + A  +++   + 
Sbjct: 178 VVAFSRAILAGTIQTLFFVVLLFMLTAFISMDAPRILRWFETVVPSHWRADLRRLRAGID 237

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
             +     G   I +  G++      +  VP   ALG +  ++ ++P  G  +S   + +
Sbjct: 238 AGLSGVVRGQLTIMVVNGILTLIGLLVLKVPFAFALGFLAFVLYIVPIFGTILSSVPIVL 297

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
             L  G    A     W  +   +    L P ++G   ++  +     LV G R+ G++G
Sbjct: 298 LALTGGGPTKALLALGWITVVHALEAYVLNPKIMGDAARIHPVLIVLALVVGERSFGIVG 357

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKEKIS 357
             +   + +++  +++       E  E+ +
Sbjct: 358 ALLAVPVASVVVAVFRFLHRKQVELDERAA 387


>gi|2506918|sp|P43969|PERM_HAEIN RecName: Full=Putative permease perM homolog
          Length = 349

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/341 (15%), Positives = 116/341 (34%), Gaps = 11/341 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             + +PQ +    I+    +S+YF     AP+L AL++ +      +      +      
Sbjct: 11  RRLSDPQAMGLLAILLFGFISIYFFGDLIAPLLIALVLSYLLEIPINFLNQYLKCPRMLA 70

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++   S + L  V  L L      +   L+S +            WL ++P        
Sbjct: 71  TILIFGSFIGLAAVFFLVLVPMLWNQTISLLSDLPAMFNKS---NEWLLNLPKNYPELID 127

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           ++   S   S++     F ++     +        M  +   +    + + +FF  +D  
Sbjct: 128 YSMVDSIFNSVREKILGFGESAVKLSLASI-----MNLVSLGIYAFLVPLMMFFMLKDKS 182

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + Q +           + +  + + + I +   G  +  +   L+    + + G+   +
Sbjct: 183 ELLQGVSRFLPKNRNLAFXRW-KEMQQQISNYIHGKLLEILIVTLITYIIFLIFGLNYPL 241

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFL 300
            L     +  ++P  GA I    V++  L +  I       +       ++D   L P+L
Sbjct: 242 LLAFAVGLSVLVPYIGAVIVTIPVALVALFQFGISPTFWYIIIAFAVSQLLDGNLLVPYL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
               + L  L     ++      G  G+F    L  L+  +
Sbjct: 302 FSEAVNLHPLIIIISVLIFGGLWGFWGVFFAIPLATLVKAV 342


>gi|297243766|ref|ZP_06927696.1| permease of the PurR regulon [Gardnerella vaginalis AMD]
 gi|296888187|gb|EFH26929.1| permease of the PurR regulon [Gardnerella vaginalis AMD]
          Length = 529

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/341 (10%), Positives = 106/341 (31%), Gaps = 19/341 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGF----TSWPIYSSFISKKEESSTFLAV 64
           + ++   I+  + + L+F     + ++  ++I         P+    I          + 
Sbjct: 45  RALIYVAIVTFVSIFLWFAWNSISFIVFDVVISIFIALAMEPLVVRLIKH-GWRRGVASG 103

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
                ++ +  + L         ++  +V  +                     +      
Sbjct: 104 FTLTGLLVVISLLLALFGNLFAQQVVSMVMGLPDLYNQ------------FANFVLHYTG 151

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             + + + L +     ++T+ +      A       +   L ++ +I+  ++    G ++
Sbjct: 152 FKMPNIEQLGMEILKHVQTSWVVDFAGQALNTTWGLMTVLLDLLTIIMVTYYISAAGPAM 211

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + +           +  I  +V + I S      I+A    +       +  +P  + L
Sbjct: 212 RRSMCRWMNPQAQRRFLFIWSVVQEQISSFLFSRIILAAINAVGTAIFLIVMNIPYWLPL 271

Query: 245 GVITAIMA-MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            +   I++  +P  G  +      +          A    ++  I   I +  + P +  
Sbjct: 272 SLFCGIVSQFVPTIGGYLGGALPILVAWGSNGFGAAVATLIFITIYQQIENMVISPKISE 331

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             + L     F  ++      G LG F+   + A +  I++
Sbjct: 332 KTMDLNPAVAFISVLVMGAVFGALGAFLALPVTASLQAIFR 372


>gi|293365480|ref|ZP_06612189.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
 gi|307703436|ref|ZP_07640378.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
 gi|291315848|gb|EFE56292.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
 gi|307622843|gb|EFO01838.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
          Length = 364

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/326 (17%), Positives = 112/326 (34%), Gaps = 7/326 (2%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           ++   +I F              +      +   ++++ +F+  +L +    +L +  L 
Sbjct: 41  LIYGAVIAFVLNVPMKKIEQFLVKMKVKAELCRPIAMVLVFLALILIVIGLLVLILPTLS 100

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             +         V   L  +             LS   S      + +    I F+    
Sbjct: 101 QTISQLGTVLSTVLTKLGKLLDSSEFVT--KDMLSTIVSGIQGESSSISQALIGFLSGLT 158

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY----WKKISRIVPK 209
           S  G       ++   +I+  F F      +++    L + L P         + ++  +
Sbjct: 159 SNIG-NIFSSLMNAFLIIVFTFSFLSSKEHLAEMTSRLLKVLLPEKVVIKLTYVGQVALE 217

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
                 +   I A+  G+++   Y L G+P  V  G+   +++ IP   P+    V    
Sbjct: 218 TYDQFLMSQLIEAVIIGVMVAVGYSLFGLPYGVMTGIFAGVLSFIPYVGPMIACVVGAIF 277

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           +   +   A    L   +   I    + P +VG  I LP L T      G    GLLG+ 
Sbjct: 278 IFTVSPTQALLSILLYQVIQLIEGNLIYPRVVGQSIGLPALFTLAAASIGGNLFGLLGMI 337

Query: 330 IGPVLMALIAVIWKESIMAIKENKEK 355
               + A+I  + KE ++A +   +K
Sbjct: 338 FFTPIFAVIYRLVKEFVVAKENQLDK 363


>gi|110634425|ref|YP_674633.1| hypothetical protein Meso_2075 [Mesorhizobium sp. BNC1]
 gi|110285409|gb|ABG63468.1| protein of unknown function UPF0118 [Chelativorans sp. BNC1]
          Length = 385

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 59/330 (17%), Positives = 117/330 (35%), Gaps = 14/330 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + + + +  LYF + FF PV+ A ++  T  PI               A ++   ++   
Sbjct: 33  VFLILFVAGLYFARDFFMPVVIAFLMAMTLTPIVRFL-----GKRGIPAALSATLLVFAS 87

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
              +  L Y     + ELV                L      +  +    K  +      
Sbjct: 88  WSAIGMLGYAMSGPVIELVDDAPRIGSELRQRVAELRRPLEDVMEASEQIKEATEAADEP 147

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
            +    +   GI       SR     L    ++   ++   F    G    +++      
Sbjct: 148 GVQRVVIAQPGI------ISRAAGNLLSVATTVGITLVLTLFLLASGTLFYEKIVQSFGA 201

Query: 195 LFPA-YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           L       +I   V + +    L + +I    G+ +G   W  GVP+ +  GV  A++  
Sbjct: 202 LSDKKRALRIVFDVEREVSRYLLTIALINSALGVTVGIGLWGLGVPNALVWGVAAAVLNF 261

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCL-FLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           +P  GA ++F  V+I  L+         L  L+ A+   +  + + P ++G  ++L  + 
Sbjct: 262 LPYVGAIVTFGLVAIISLVTFESLYFAMLPPLYVALCNTLEGQFVTPLVLGRRLELNAVA 321

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            F  +       G++G  I   L+ ++ V 
Sbjct: 322 IFIAVAFWSWLWGIVGALIAVPLLVVVKVF 351


>gi|227518987|ref|ZP_03949036.1| permease [Enterococcus faecalis TX0104]
 gi|227073559|gb|EEI11522.1| permease [Enterococcus faecalis TX0104]
          Length = 383

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 58/372 (15%), Positives = 126/372 (33%), Gaps = 27/372 (7%)

Query: 11  IMRWMIMFIILVSLYF-------------LKGFFAPVLSALIIGFTSWPIYSSFISKKE- 56
           ++R++ +  ++V                 L G  +P ++  +I +             + 
Sbjct: 12  VVRFLFVMALIVGYLLITNYQHFVHSVSGLLGILSPFITGFVIAYLLSGSQKKIEGLLKI 71

Query: 57  -------ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW 109
                         ++  + ++ +F++ L ++    +  + +L + +     H +     
Sbjct: 72  PLPVVKKAKHGLSVLLLYLIILFIFVLTLNYIVPLLISNLVDLANSLPTFYDHMVQFVMS 131

Query: 110 LSD--IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
           L D  I       +     L      + L++    T  +  +          FL+  L++
Sbjct: 132 LEDKGILKTAAIEKYLNSVLKDLSPERFLNQ---WTQALFSLGTLTKNVSSFFLNAFLTL 188

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           I  I AL F       + +    L         +       K+         + A   G+
Sbjct: 189 IISIYALVFKQSILTFVEKAAHKLLSEKVYKQTQTWLSTTNKIFYKFISCQFLDACIIGV 248

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
                  +  V   V LG++  I  MIP  G+  +     +  L  G +  A  + L   
Sbjct: 249 SSTILLSILNVKFAVTLGILLGICNMIPYFGSIFASIVAGVITLFTGGVTQAITVLLVLL 308

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           I   I    + P ++G  + +  +     +  G    G+LG+F+   + A+I +I  E +
Sbjct: 309 ILQQIDGNIIGPRIMGDALNVNPILIIVSITIGGAYFGVLGMFLAVPVAAIIKIIVSEWL 368

Query: 347 MAIKENKEKISS 358
              KEN + + S
Sbjct: 369 NESKENDKIVDS 380


>gi|322392109|ref|ZP_08065571.1| membrane protein [Streptococcus peroris ATCC 700780]
 gi|321145009|gb|EFX40408.1| membrane protein [Streptococcus peroris ATCC 700780]
          Length = 369

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/338 (14%), Positives = 113/338 (33%), Gaps = 8/338 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            II   +  +     P L    + + + PI      + + +     ++    +    ++ 
Sbjct: 29  AIITPFVSVVNTIMIPFLLGGFLYYLTNPIVIFLEKECKINRIIGILLTLFVLFGSIVIG 88

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +++L    + ++  L+S           +   LS  P            +        LS
Sbjct: 89  VVYLLPILINQLSSLISSSQGIYGRLQDLVIELSKYPTFQEID------IQQTIQQLNLS 142

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              +  N ++ +           +   L II   + L +F  DG      L+        
Sbjct: 143 YVDILQNILNSVTNSVGSVLSALVSTVLIIIMTPVFLIYFLLDGHKFLPMLERSVLKRDK 202

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-G 256
                + + +   I     G++I A+  G +    Y + G+   +   + + +  +IP  
Sbjct: 203 RNISGLLKNLNSTISRYISGVSIDALIIGCLAYIGYSVIGLRYALVFAIFSGLANLIPYV 262

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           G  I    + I  L   +        ++  I   +    L P +VGG +K+  +     L
Sbjct: 263 GPSIGLIPMVISNLFT-DPQKMIIAVIYMLIIQQVDGNILYPRIVGGVMKVHPITILVLL 321

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           +      G++G+ +     +++  I K      + +KE
Sbjct: 322 LLSSNIYGVVGMIVAVPTYSILKEISKFLARLYENHKE 359


>gi|240138654|ref|YP_002963126.1| putative permease (PerM family) [Methylobacterium extorquens AM1]
 gi|240008623|gb|ACS39849.1| putative permease (PerM family) [Methylobacterium extorquens AM1]
          Length = 370

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/315 (14%), Positives = 102/315 (32%), Gaps = 24/315 (7%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS------ 69
           I+ +++  LY L+    P ++ L + +   P+               A +  ++      
Sbjct: 11  ILAVVVFLLYELREVMLPFVAGLALAYLLDPLADRLERLGLGR--LAATLLILAGFVVGF 68

Query: 70  -VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ + +VPL       ++     +   + +       P  L  I G    +EL +   +
Sbjct: 69  VVLLIIVVPLAAGQIASLVNSLPTMVWRLQSILVERAGP-LLQRIGGTEVVNELQSSVGT 127

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                      FLK+                 +     ++   +  F+   D   +   L
Sbjct: 128 LVGQGGAWFLAFLKSLWTG---------SQALVSIASLLVVTPVVAFYVLHDWDRMIAAL 178

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D           ++++  +   +     G +++ +  G       +L G+   V +G+I+
Sbjct: 179 DGWVPPRHRPTARRLAGEIDGAVTGFVRGQSLVCLILGSFYAVGLFLVGLNFGVLIGMIS 238

Query: 249 AIMAMIPG-----GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
             +  IP      G  +S     +     G+  +         +  F+    + P LVG 
Sbjct: 239 GFLTFIPYVGTLTGFLLSVGVALVQWWPSGDWLHIGLTVGVFLVGQFLEGNVISPKLVGD 298

Query: 304 PIKLPFLPTFFGLVG 318
            + L  +   F L+ 
Sbjct: 299 SVGLHPVWLMFALLA 313


>gi|193214208|ref|YP_001995407.1| hypothetical protein Ctha_0489 [Chloroherpeton thalassium ATCC
           35110]
 gi|193087685|gb|ACF12960.1| protein of unknown function UPF0118 [Chloroherpeton thalassium ATCC
           35110]
          Length = 404

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/348 (15%), Positives = 126/348 (36%), Gaps = 7/348 (2%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
            + + +   R +   +IL  ++F   L G  +P + +  + +   P+ +    K+    +
Sbjct: 45  PLRDSEYGRRLLWSSVILFFIWFVTALSGLLSPFIISFTLAYLFDPMVNWLCKKRVPR-S 103

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A   T+  +    + ++ +      ++  L+  + +  +  + V   LS        +
Sbjct: 104 VAAFFITMFGIGGLALLIILVVPEVSRQIMALLGLIKILPERTLDVINALSKWEFFDRLN 163

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                       L       +     DF    A       +   ++IIF+ I  F+F  D
Sbjct: 164 LDVEMMEKQLSGLVTSRVGDIGKLTADFATSLALSI-PKVISTIMNIIFIPILSFYFLND 222

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
             +I   L  +  + +     +   +   + +    G  II   E ++    + L G+  
Sbjct: 223 FETIRDTLYKILPNTYTQTVHRYVDVAGTIFKQYLRGYLIIMTLEIILYTIIFSLIGIKY 282

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF--LWGAIELFIVDKTLRP 298
            + L +I   M  +P        +++  ++  GN      LF  L       + +  L P
Sbjct: 283 PLVLAIIAGAMLFVPYIGIFISVSLTALVIALGNGEGQIYLFTGLTYLTIQSVENFFLIP 342

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            +VG  ++L  +  F  +V     +G +G+ I   + A +  I++  +
Sbjct: 343 KIVGSRVQLNPILLFLAIVLFGYFIGFVGILIAVPVSAFLVAIFRHKV 390


>gi|312969714|ref|ZP_07783897.1| inner membrane domain protein [Escherichia coli 1827-70]
 gi|310337999|gb|EFQ03088.1| inner membrane domain protein [Escherichia coli 1827-70]
          Length = 168

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 48/128 (37%), Gaps = 1/128 (0%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  +   +WP+            +   ++ T+ ++ +
Sbjct: 18  LFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMV 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           FI+P+  L    +     L+ K + +    +P   WL+ IP           +L      
Sbjct: 78  FIIPIALLVNSIVDGSGPLI-KAISSGDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGR 136

Query: 134 KILSETFL 141
           +   ++ L
Sbjct: 137 RSWRKSAL 144


>gi|285808297|gb|ADC35828.1| hypothetical protein [uncultured bacterium 89]
          Length = 349

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/336 (15%), Positives = 114/336 (33%), Gaps = 25/336 (7%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT--VSVMCL 73
           ++ + +  +Y ++      + AL+  +   P+          S T    +A   + V  +
Sbjct: 17  LVLLAMSMVYLIRHTLFIFVIALLFAYLLSPLVDFLDRLFPSSRTRTPALALAYILVTGI 76

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            I     L    + +  E ++++                   G W   L           
Sbjct: 77  LIGGGFMLGTRAVDQANEFITRIPEVVGKAKNFAP-----KDGSWLGRLLENTEDQLAQR 131

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG- 192
                 +L   G   I            +  + I+ + I  FF  +D  S+ + L  +  
Sbjct: 132 INDVLHYLPALGKGVI---------SVAETLVLIVVVPIFSFFLLKDASSLRKSLLEMMG 182

Query: 193 ----EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 L       ++ ++ + +R+      ++ +    +   A   AG P  + L  I 
Sbjct: 183 TGSHRELMEDLADDVNLLLAQYVRALA----LLCLTTFTIFALAAEFAGAPYPLLLAGIA 238

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           A +  IP   P++   + I + +     +   +  +  I     D  + P L+   ++L 
Sbjct: 239 AGLEFIPMVGPLTAAVLIIVINLIAGYPHILGVLAFLGIYRIFQDYVVAPRLMSAGMELH 298

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            L   FG+  G    G+ G F+    +A+I ++++ 
Sbjct: 299 PLMVMFGVFAGAEVGGIPGTFLSVPAVAMIRIVYRR 334


>gi|256964900|ref|ZP_05569071.1| membrane protein [Enterococcus faecalis HIP11704]
 gi|307272991|ref|ZP_07554238.1| hypothetical protein HMPREF9514_01757 [Enterococcus faecalis
           TX0855]
 gi|256955396|gb|EEU72028.1| membrane protein [Enterococcus faecalis HIP11704]
 gi|306510605|gb|EFM79628.1| hypothetical protein HMPREF9514_01757 [Enterococcus faecalis
           TX0855]
          Length = 366

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/344 (16%), Positives = 117/344 (34%), Gaps = 15/344 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKK---------EESSTFLAVIATVSVMCLFIVP 77
           L G  +P ++  +I +                      +       ++  + ++ +F++ 
Sbjct: 23  LLGILSPFITGFVIAYLLSGSQKKIEGLLERVPLPVVKKAKHGLSVLLLYLIILFIFVLT 82

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLKI 135
           L ++    +  + +L + +     H +     L D  I       +     L      + 
Sbjct: 83  LNYIVPLLISNLVDLANSLPTFYDHMVQFVMSLEDKGILKTAAIEKYLNSVLKDLSPERF 142

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           L++    T  +  +          FL+  L++I  I AL F       + +    L    
Sbjct: 143 LNQ---WTQALLSLGTLTKNVSSFFLNAFLTLIISIYALVFKQSILTFVEKAAHKLLSEK 199

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                +       K+         + A   G+       +  V   V LG++  I  MIP
Sbjct: 200 VYKQTQTWLNTTNKIFYKFISCQFLDACIIGVSSTILLSILNVKFAVTLGILLGICNMIP 259

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G+  +     +  L  G +  A  + L   I   I    + P ++G  + +  +    
Sbjct: 260 YFGSIFASIVAGVITLFTGGVTQAITVLLVLLILQQIDGNIIGPRIMGDALNVNPILIIV 319

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            +  G    G+LG+F+   + A+I +I  E +   KEN + + S
Sbjct: 320 SITIGGAYFGVLGMFLAVPVAAIIKIIVSEWLNESKENDKIVDS 363


>gi|312111198|ref|YP_003989514.1| hypothetical protein GY4MC1_2166 [Geobacillus sp. Y4.1MC1]
 gi|311216299|gb|ADP74903.1| protein of unknown function UPF0118 [Geobacillus sp. Y4.1MC1]
          Length = 342

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/348 (14%), Positives = 121/348 (34%), Gaps = 26/348 (7%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           R +I  +++  LY ++     +L   I  F    +      +   +   + ++  V+V+ 
Sbjct: 16  RIVIFSVLIFILYLVRSILNIILLTFIFSFLMNGLVDFISKRIRINRKIIVLLLYVAVVS 75

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           + +  ++      + E+ +L+ ++            +                       
Sbjct: 76  ILVYGVVKYLPVVINEISQLIKQLTEFYSKPQDNIVF---------------------NY 114

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           +    + +  T  ++F   +  ++        L I+  +I   FF  +   I    +   
Sbjct: 115 IIEQLKHYEITTYLNFGMTYLIKYFSDIGSVGLQILLALILSLFFLLEKERIISFTNRFK 174

Query: 193 EHLFPAYWKKIS---RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                 ++ ++    R   +          IIA     +  +  W+   P    LG++  
Sbjct: 175 YSKISPFYNELEYFGRKFVRTFGKVIEAQFIIATVNMAITVAGLWIMDFPQLFGLGILIF 234

Query: 250 IMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            + +IP  G  IS   +       G I     + +  A+   +    L P L+     LP
Sbjct: 235 FLGLIPVAGVIISLFPLCFIAYSIGGIMKVVYVLIMIAVIHALEAYVLNPKLMSSKTNLP 294

Query: 309 FLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKEK 355
              TF  L+      G+ GL +G PV + ++ V+  +++   +++ ++
Sbjct: 295 VFYTFIVLIFSEHFFGVWGLILGIPVFVFILDVLGVKTVQGKRDDDDE 342


>gi|229824112|ref|ZP_04450181.1| hypothetical protein GCWU000282_01416 [Catonella morbi ATCC 51271]
 gi|229786466|gb|EEP22580.1| hypothetical protein GCWU000282_01416 [Catonella morbi ATCC 51271]
          Length = 379

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/335 (14%), Positives = 118/335 (35%), Gaps = 12/335 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKK-------EESSTFLAVIATVSVMCLFIVPLLFLFY 83
             P+++  I  +    +   +               +    ++    +  F++ ++ +  
Sbjct: 39  LGPIINGAIFAYILNLLMVRYEGLLTKVQGQVPGVKSLKRPVSMFLSLLTFVLAVIMILV 98

Query: 84  YGMLEMKELVSKVVLANQ-----HGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
             + ++   +S+ +             +  + +  P           +        +   
Sbjct: 99  LVLPQLSTAISRFIEVIPGVSTWLQRAIEEYDAYFPQLQTLMSQLNINWGSLIQQSMTVL 158

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             L +N ++      +      ++  LS++  +  L    R      + + +  +     
Sbjct: 159 NTLSSNFLNITFNTITGVASNTINSILSLMVALYILGSKERLLLQGKRVIMAYLKPSHAQ 218

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
               I R++ +   + F+GMT+  I  G ++  A  +  +P    LGVI  +MA+IP   
Sbjct: 219 TLLDIIRLMNESFTNFFVGMTLEGIILGSLVTVAASIFNLPYAGMLGVIAGVMALIPIIG 278

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
                AV   +L+  +   A    +   I + +    + P +VGG I LP L        
Sbjct: 279 GYISAAVGTLMLLAVSPSQALFYLVMVIIIMQLEGNLIYPRVVGGSIGLPGLWVLVAFTV 338

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G   MG+ G+ +G  L A +  +    ++  ++ +
Sbjct: 339 GGGLMGISGMILGIPLAATLYKLLGRDVLMREKRQ 373


>gi|213857376|ref|ZP_03384347.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 200

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 68/189 (35%), Gaps = 8/189 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +I+  L+ ++ F      A  I   +WP+            +   ++ T+ ++ L
Sbjct: 18  LFLAIMIVACLWIVQPFILGFAWAGTIVIATWPVLLKLQKILWGRRSLAVLVMTLLLVLL 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQ- 131
           F++P+  L    +     L+   V      +P   WL++IP  G      W   L     
Sbjct: 78  FVIPVALLVNSIVDGSGPLI-HAVTGGDMTLPDLAWLNNIPLVGAKLYAGWHSLLDMGGS 136

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           ++      ++ T  I F+ + A+  G   +   L ++F  +     Y  G  ++  +   
Sbjct: 137 AIMAKVRPYIGTTTIWFVGQ-AAHIGRFMMHCALMLLFSAL----LYWRGEQVAMGIRHF 191

Query: 192 GEHLFPAYW 200
              L     
Sbjct: 192 ACRLAAKRG 200


>gi|197123871|ref|YP_002135822.1| hypothetical protein AnaeK_3480 [Anaeromyxobacter sp. K]
 gi|196173720|gb|ACG74693.1| protein of unknown function UPF0118 [Anaeromyxobacter sp. K]
          Length = 412

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 80/210 (38%), Gaps = 1/210 (0%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +  F+       +     ++ + +   F   D   I +  +++    + A  +++   + 
Sbjct: 178 VVAFSRAILAGTIQTLFFVVLLFMLTAFISMDAPRILRWFETVVPSHWRADLRRLRAGID 237

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
             +     G   I +  G++      +  VP   ALG +  ++ ++P  G  +S   + +
Sbjct: 238 AGLSGVVRGQLTIMVVNGVLTLIGLLVLKVPFAFALGFLAFVLYIVPIFGTILSSVPIVL 297

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
             L  G    A     W  +   +    L P ++G   ++  +     LV G R+ G++G
Sbjct: 298 LALTGGGPTKALLALGWITVVHALEAYVLNPKIMGDAARIHPVLIVLALVVGERSFGIVG 357

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKEKIS 357
             +   + +++  +++       E  E+ +
Sbjct: 358 ALLAVPVASVVVAVFRFLHRKQVELDERAA 387


>gi|307289338|ref|ZP_07569293.1| hypothetical protein HMPREF9505_02708 [Enterococcus faecalis
           TX0109]
 gi|306499705|gb|EFM69067.1| hypothetical protein HMPREF9505_02708 [Enterococcus faecalis
           TX0109]
 gi|315163738|gb|EFU07755.1| conserved hypothetical protein [Enterococcus faecalis TX1302]
          Length = 366

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/344 (16%), Positives = 117/344 (34%), Gaps = 15/344 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKK---------EESSTFLAVIATVSVMCLFIVP 77
           L G  +P ++  +I +                      +       ++  + ++ +F++ 
Sbjct: 23  LLGILSPFITGFVIAYLLSGSQKKIEGLLERVPLPAVKKAKHGLSVLLLYLIILFIFVLT 82

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLKI 135
           L ++    +  + +L + +     H +     L D  I       +     L      + 
Sbjct: 83  LNYIVPLLISNLVDLANSLPTFYDHMVQFVMSLEDKGILKTAAIEKYLNSVLKDLSPERF 142

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           L++    T  +  +          FL+  L++I  I AL F       + +    L    
Sbjct: 143 LNQ---WTQALFSLGTLTKNVSSFFLNAFLTLIISIYALVFKQSILTFVEKAAHKLLSEK 199

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                +       K+         + A   G+       +  V   V LG++  I  MIP
Sbjct: 200 VYKQTQTWLNTTNKIFYKFISCQFLDACIIGVSSTILLSILNVKFAVTLGILLGICNMIP 259

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G+  +     +  L  G +  A  + L   I   I    + P ++G  + +  +    
Sbjct: 260 YFGSIFASIVAGVITLFTGGVTQAITVLLVLLILQQIDGNIIGPRIMGDALNVNPILIIV 319

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            +  G    G+LG+F+   + A+I +I  E +   KEN + + S
Sbjct: 320 SITIGGAYFGVLGMFLAVPVAAIIKIIVSEWLNESKENDKIVDS 363


>gi|262170855|ref|ZP_06038533.1| permease PerM [Vibrio mimicus MB-451]
 gi|261891931|gb|EEY37917.1| permease PerM [Vibrio mimicus MB-451]
          Length = 356

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 59/353 (16%), Positives = 123/353 (34%), Gaps = 14/353 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P       I+    +++YF     AP+L A+++ +   WP+    + +     T   VI
Sbjct: 15  DPHAASLVAILLFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQ--LRRLRIPRTVAVVI 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
                  L I+ +  L      ++  L++ V           ++++ +P           
Sbjct: 73  VITVFTGLMILAVFGLVPTIWKQVGNLINDVPNMYSGTQ---QFITSLPE----RYPELA 125

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           HL   +S+   ++  +   G   +    +   +      + +I + + +FF  +D   + 
Sbjct: 126 HLEIVESVISNAKNKVLGMGETVVKGSLASL-VSLATLGVYLILVPLLVFFLLKDKQEML 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +          K+   + + I +   G  +  I  G V    + +  +   V L 
Sbjct: 185 RMASGVLPR-NRKLATKVWEEMNQQISNYIRGKVLEIIIVGTVSYITFAILDLRYSVLLA 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V   +  +IP  GA      V+I  L + G       L +   I   +    L P L   
Sbjct: 244 VAVGLSVLIPYVGAAAVTVPVAIVALFQWGLTPQFYTLLIAYGIIQALDGNVLVPILFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            + L  +     ++      G  G+F    L  L+  +WK       E + +I
Sbjct: 304 AVNLHPVAIIIAVLVFGGLWGFWGVFFAIPLATLVKAVWKALPSLEDEPEARI 356


>gi|257063512|ref|YP_003143184.1| predicted permease [Slackia heliotrinireducens DSM 20476]
 gi|256791165|gb|ACV21835.1| predicted permease [Slackia heliotrinireducens DSM 20476]
          Length = 492

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 61/353 (17%), Positives = 128/353 (36%), Gaps = 23/353 (6%)

Query: 14  WMIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
             I+ I+    Y L+      + V+ A +  F      + F SK        A+   V  
Sbjct: 27  IGIVVIVAGIGYVLRILSTPLSIVMWATLFVFILRSPVAFFESKGIPRVWGTAISYVVMF 86

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             L +  L+ + +     + E       A      +P W +++   + A+     H+   
Sbjct: 87  AVLSV--LVAIMFSPTDGIGE------QAENFIASIPGWATNVADWINANYDQYAHMFDE 138

Query: 131 QSLKILSETFLKTNGIDF------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
            +++   ++FL +                  F     +  + IIF +I  F+   +  ++
Sbjct: 139 TTVREWLDSFLSSMSAWANELASASATSILDFTSGLANSLMIIIFGLIVAFWILMELPAM 198

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            ++   +    F    + +   V + +        ++ +  G+  G  + +A VP+   L
Sbjct: 199 GREFRRMVPDRFSDDVEMLYLTVTQAMGGYVRATLVVCLSIGVACGLVFGIASVPNAAVL 258

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            +I A++ +IP  G  I    V+   L  G I  A  +F+   I   IV   ++P L+  
Sbjct: 259 ALIAAVLNVIPVVGHWIGLFLVTGIALFSGPIT-AVIVFVSTLIIQEIVYMLIQPKLMSN 317

Query: 304 PIKLPFLPTFFGLVG----GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            + +        +      G    G++G  +G ++   +A I K   +   E 
Sbjct: 318 SVDVHPALVIVAMFIGSSAGTALAGIVGSIVGMLISIPVAAILKSLFVYYYER 370


>gi|169830798|ref|YP_001716780.1| hypothetical protein Daud_0614 [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637642|gb|ACA59148.1| protein of unknown function UPF0118 [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 358

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 58/326 (17%), Positives = 113/326 (34%), Gaps = 10/326 (3%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + ++     ++     P L AL+I     P       +         +     ++ +   
Sbjct: 24  LIVLFYIARYMLPILLPFLVALMISLLIEPAVRLLQERLRFPRPLAVIGVIFVLLAVVGA 83

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD---IPGGMWASELWTKHLSHPQSL 133
            L       + E+  L S +     +       L D   I  G     +         S 
Sbjct: 84  LLTAAALRLVAELGHLSSLLPYHVANFRRTFEGLLDDAVIFYGRLPPAMVNYIDGLLASA 143

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
               E FL+      +               + ++   +A +FF RD   + +       
Sbjct: 144 VKSLEGFLRGALDASLG-----LLSTVPFMIVVLMITFVATYFFSRDNEKLREAWIRAIP 198

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
             + A    I R         F    ++      +  +   + GVP  V++G++T I  +
Sbjct: 199 EPWGARSLLIVREGFGAFIRFFRAQFVLVSITTAITITGLLIIGVPYAVSIGIVTGIFDL 258

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +P  G    F     + ++ G+   A  LF+  AI LF V  +L   +V   + +  L  
Sbjct: 259 LPILGPTTIFVPWIAWCVLTGSYSLALKLFVLYAI-LFTVRASLEAKVVSMNLGIHPLAV 317

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALI 338
              +  G++ MG+LGL +GP+L+ ++
Sbjct: 318 LVAMYIGLKVMGILGLILGPILVVVV 343


>gi|24374396|ref|NP_718439.1| permease PerM, putative [Shewanella oneidensis MR-1]
 gi|24348962|gb|AAN55883.1|AE015725_5 permease PerM, putative [Shewanella oneidensis MR-1]
          Length = 361

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 101/303 (33%), Gaps = 12/303 (3%)

Query: 45  WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
           WP+      K   + T  A +  +  + + ++    L      +   L++ +      G+
Sbjct: 54  WPVAQML--KLGINRTTAASLVLIIFLGIVVLLTFGLIPSVWRQGVSLMTDLPSMIDKGL 111

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
              + L+       + E           +    +  L T  +  I +    +    L   
Sbjct: 112 QTVQGLATQYPQFISVEQLNL-------MVAELKKLLDTQHVLDIAKQLIGYSASLLVLM 164

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
           +  I + + +FFF +D   +                +K+   + + I +   G  I  + 
Sbjct: 165 VYAILVPLLVFFFLKDKDQLISGSKRFFPT-NRQLARKVWFEMHQQIFNYIRGKVIEIVI 223

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFL 283
            G+     +   G+     LGV+T +  +IP  GA +    + +    +    +     +
Sbjct: 224 VGVASYILFAFMGLSYSALLGVLTGLSVLIPYVGATLVTLPIMLVAFFQWGFSSEFGYLM 283

Query: 284 WGAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            G   +  +D   L P L    + L  +     ++      G+LG+F    L +L+  + 
Sbjct: 284 LGYGIIQALDGNVLVPILFSDAVDLHPVIIIAAVLVFGGLWGVLGVFFAIPLASLVKAVI 343

Query: 343 KES 345
              
Sbjct: 344 NAW 346


>gi|229545594|ref|ZP_04434319.1| permease [Enterococcus faecalis TX1322]
 gi|229549782|ref|ZP_04438507.1| permease [Enterococcus faecalis ATCC 29200]
 gi|255972511|ref|ZP_05423097.1| predicted protein [Enterococcus faecalis T1]
 gi|256619288|ref|ZP_05476134.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256762780|ref|ZP_05503360.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256959202|ref|ZP_05563373.1| membrane protein [Enterococcus faecalis DS5]
 gi|256961703|ref|ZP_05565874.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|257079238|ref|ZP_05573599.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|257084957|ref|ZP_05579318.1| membrane protein [Enterococcus faecalis Fly1]
 gi|257087079|ref|ZP_05581440.1| membrane protein [Enterococcus faecalis D6]
 gi|257090112|ref|ZP_05584473.1| predicted protein [Enterococcus faecalis CH188]
 gi|257419521|ref|ZP_05596515.1| predicted protein [Enterococcus faecalis T11]
 gi|257422339|ref|ZP_05599329.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|293383408|ref|ZP_06629321.1| conserved hypothetical protein [Enterococcus faecalis R712]
 gi|293388939|ref|ZP_06633424.1| conserved hypothetical protein [Enterococcus faecalis S613]
 gi|307269611|ref|ZP_07550949.1| hypothetical protein HMPREF9498_01744 [Enterococcus faecalis
           TX4248]
 gi|307275742|ref|ZP_07556882.1| hypothetical protein HMPREF9521_01371 [Enterococcus faecalis
           TX2134]
 gi|307291763|ref|ZP_07571635.1| hypothetical protein HMPREF9509_02062 [Enterococcus faecalis
           TX0411]
 gi|312901794|ref|ZP_07761062.1| conserved hypothetical protein [Enterococcus faecalis TX0470]
 gi|312903549|ref|ZP_07762729.1| conserved hypothetical protein [Enterococcus faecalis TX0635]
 gi|312907764|ref|ZP_07766755.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 512]
 gi|312910382|ref|ZP_07769229.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 516]
 gi|312950907|ref|ZP_07769817.1| conserved hypothetical protein [Enterococcus faecalis TX0102]
 gi|229305051|gb|EEN71047.1| permease [Enterococcus faecalis ATCC 29200]
 gi|229309252|gb|EEN75239.1| permease [Enterococcus faecalis TX1322]
 gi|255963529|gb|EET96005.1| predicted protein [Enterococcus faecalis T1]
 gi|256598815|gb|EEU17991.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256684031|gb|EEU23726.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256949698|gb|EEU66330.1| membrane protein [Enterococcus faecalis DS5]
 gi|256952199|gb|EEU68831.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256987268|gb|EEU74570.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256992987|gb|EEU80289.1| membrane protein [Enterococcus faecalis Fly1]
 gi|256995109|gb|EEU82411.1| membrane protein [Enterococcus faecalis D6]
 gi|256998924|gb|EEU85444.1| predicted protein [Enterococcus faecalis CH188]
 gi|257161349|gb|EEU91309.1| predicted protein [Enterococcus faecalis T11]
 gi|257164163|gb|EEU94123.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|291079199|gb|EFE16563.1| conserved hypothetical protein [Enterococcus faecalis R712]
 gi|291081720|gb|EFE18683.1| conserved hypothetical protein [Enterococcus faecalis S613]
 gi|306497215|gb|EFM66760.1| hypothetical protein HMPREF9509_02062 [Enterococcus faecalis
           TX0411]
 gi|306507618|gb|EFM76748.1| hypothetical protein HMPREF9521_01371 [Enterococcus faecalis
           TX2134]
 gi|306514084|gb|EFM82664.1| hypothetical protein HMPREF9498_01744 [Enterococcus faecalis
           TX4248]
 gi|310626792|gb|EFQ10075.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 512]
 gi|310631056|gb|EFQ14339.1| conserved hypothetical protein [Enterococcus faecalis TX0102]
 gi|310633425|gb|EFQ16708.1| conserved hypothetical protein [Enterococcus faecalis TX0635]
 gi|311289655|gb|EFQ68211.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 516]
 gi|311291129|gb|EFQ69685.1| conserved hypothetical protein [Enterococcus faecalis TX0470]
 gi|315027953|gb|EFT39885.1| conserved hypothetical protein [Enterococcus faecalis TX2137]
 gi|315029470|gb|EFT41402.1| conserved hypothetical protein [Enterococcus faecalis TX4000]
 gi|315036687|gb|EFT48619.1| conserved hypothetical protein [Enterococcus faecalis TX0027]
 gi|315144894|gb|EFT88910.1| conserved hypothetical protein [Enterococcus faecalis TX2141]
 gi|315147495|gb|EFT91511.1| conserved hypothetical protein [Enterococcus faecalis TX4244]
 gi|315152250|gb|EFT96266.1| conserved hypothetical protein [Enterococcus faecalis TX0031]
 gi|315156051|gb|EFU00068.1| conserved hypothetical protein [Enterococcus faecalis TX0043]
 gi|315157800|gb|EFU01817.1| conserved hypothetical protein [Enterococcus faecalis TX0312]
 gi|315162384|gb|EFU06401.1| conserved hypothetical protein [Enterococcus faecalis TX0645]
 gi|315167426|gb|EFU11443.1| conserved hypothetical protein [Enterococcus faecalis TX1341]
 gi|315169473|gb|EFU13490.1| conserved hypothetical protein [Enterococcus faecalis TX1342]
 gi|315174798|gb|EFU18815.1| conserved hypothetical protein [Enterococcus faecalis TX1346]
 gi|315575992|gb|EFU88183.1| conserved hypothetical protein [Enterococcus faecalis TX0309B]
 gi|315577896|gb|EFU90087.1| conserved hypothetical protein [Enterococcus faecalis TX0630]
 gi|315580712|gb|EFU92903.1| conserved hypothetical protein [Enterococcus faecalis TX0309A]
          Length = 366

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/344 (16%), Positives = 117/344 (34%), Gaps = 15/344 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKK---------EESSTFLAVIATVSVMCLFIVP 77
           L G  +P ++  +I +                      +       ++  + ++ +F++ 
Sbjct: 23  LLGILSPFITGFVIAYLLSGSQKKIEGLLERVPLPVVKKAKHGLSVLLLYLIILFIFVLT 82

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLKI 135
           L ++    +  + +L + +     H +     L D  I       +     L      + 
Sbjct: 83  LNYIVPLLISNLVDLANSLPTFYDHMVQFVMSLEDKGILKTAAIEKYLNSVLKDLSPERF 142

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           L++    T  +  +          FL+  L++I  I AL F       + +    L    
Sbjct: 143 LNQ---WTQALFSLGTLTKNVSSFFLNAFLTLIISIYALVFKQSILTFVEKAAHKLLSEK 199

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                +       K+         + A   G+       +  V   V LG++  I  MIP
Sbjct: 200 VYKQTQTWLNTTNKIFYKFISCQFLDACIIGVSSTILLSILNVKFAVTLGILLGICNMIP 259

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G+  +     +  L  G +  A  + L   I   I    + P ++G  + +  +    
Sbjct: 260 YFGSIFASIVAGVITLFTGGVTQAITVLLVLLILQQIDGNIIGPRIMGDALNVNPILIIV 319

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            +  G    G+LG+F+   + A+I +I  E +   KEN + + S
Sbjct: 320 SITIGGAYFGVLGMFLAVPVAAIIKIIVSEWLNESKENDKIVDS 363


>gi|332175167|gb|AEE24421.1| protein of unknown function UPF0118 [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 353

 Score = 77.6 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 60/347 (17%), Positives = 116/347 (33%), Gaps = 23/347 (6%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           ++I ++++ +   L  FF  +L    I        S    K    S FL  +  ++   L
Sbjct: 21  FLIAWLVVTNGKILLTFFGGIL----IAVLFRESASWIGHKTGFKSKFLLPVTIIAPFVL 76

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             +   +       + +EL+ ++  A+     +   LS +P G    E  T   S    +
Sbjct: 77  LGLFFAYTAPQISAQGEELMERIPQADT---YINEHLSGLPWGTQLKENLTNLSSADSEV 133

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                          +    S      L+   S IF +    F   +     +   +L  
Sbjct: 134 ST-------------VVNAVSSVFSSTLNGFGSFIFALFLGLFLAVNPDWYIKGAVTLVP 180

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  +++     + +    +      +  G++     W  G    + LGVI A+++ 
Sbjct: 181 PARRERIREVLGACGRALSGWLVAKIASMVLVGILTTLGLWALGTDLALVLGVIAALLSF 240

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP  G  + F   ++  +I G       + +       I    L P L      LP   T
Sbjct: 241 IPNIGPILGFIPAAMVSVITGLDTL-LYVSILYVAVQMIESYVLTPMLQAELADLPPALT 299

Query: 313 FFGLVGGVRTMGLLGLFI-GPVLMALIAVIWKESIMAIKENKEKISS 358
            F  V     +G+ G+ +  P+ +A +  I K  +  I E   +   
Sbjct: 300 LFAQVALGAMVGMAGILLAAPLCVAAMVFINKLYVEDILEKPNENRQ 346


>gi|315149794|gb|EFT93810.1| conserved hypothetical protein [Enterococcus faecalis TX0012]
          Length = 361

 Score = 77.6 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/341 (16%), Positives = 116/341 (34%), Gaps = 15/341 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKK---------EESSTFLAVIATVSVMCLFIVP 77
           L G  +P ++  +I +                      +       ++  + ++ +F++ 
Sbjct: 23  LLGILSPFITGFVIAYLLSGSQKKIEGLLERVPLPVVKKAKHGLSVLLLYLIILFIFVLT 82

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLKI 135
           L ++    +  + +L + +     H +     L D  I       +     L      + 
Sbjct: 83  LNYIVPLLISNLVDLANSLPTFYDHMVQFVMSLEDKGILKTAAIEKYLNSVLKDLSPERF 142

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           L++    T  +  +          FL+  L++I  I AL F       + +    L    
Sbjct: 143 LNQ---WTQALFSLGTLTKNVSSFFLNAFLTLIISIYALVFKQSILTFVEKAAHKLLSEK 199

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                +       K+         + A   G+       +  V   V LG++  I  MIP
Sbjct: 200 VYKQTQTWLNTTNKIFYKFISCQFLDACIIGVSSTILLSILNVKFAVTLGILLGICNMIP 259

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G+  +     +  L  G +  A  + L   I   I    + P ++G  + +  +    
Sbjct: 260 YFGSIFASIVAGVITLFTGGVTQAITVLLVLLILQQIDGNIIGPRIMGDALNVNPILIIV 319

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            +  G    G+LG+F+   + A+I +I  E +   KEN +K
Sbjct: 320 SITIGGAYFGVLGMFLAVPVAAIIKIIVSEWLNESKENDKK 360


>gi|222053922|ref|YP_002536284.1| protein of unknown function UPF0118 [Geobacter sp. FRC-32]
 gi|221563211|gb|ACM19183.1| protein of unknown function UPF0118 [Geobacter sp. FRC-32]
          Length = 347

 Score = 77.6 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/322 (14%), Positives = 102/322 (31%), Gaps = 16/322 (4%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           YF+    + +L++L++ +   P+      K       L +I       L +   +   Y 
Sbjct: 27  YFIHHTLSALLTSLVLAYLLNPLLKYLELKGLGRLPALGIIYVALAAILTVSSFILAPYL 86

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM--WASELWTKHLSHPQSLKILSETFLK 142
           G                    +P ++ ++ G +  W  +L   +        +       
Sbjct: 87  G-----------HQLQTLKDTIPYYVLNLKGELTQWQFQLSPYYSGEEGIWLLQRGKESF 135

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 +                ++I   I +FF           +  L           
Sbjct: 136 DRMTQALSGLGYNRLTAIFYGIFNLILAPILIFFMLLYKQMCKDMVKRLIPLGHRRQMID 195

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGAPI 260
           + R +   +    +GM I      ++   A W+  +   V  G++    +++P  G    
Sbjct: 196 LGRRINSSLERFIIGMAIDCTLVAILTAFALWMLDIQFAVLNGLLAGFASVVPILGVTIA 255

Query: 261 SFTAVSIYLLIKGNI-FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
               + I     G+I   A    L+  I + I    ++P ++   ++L  L   F ++  
Sbjct: 256 VIPPLLIGYAQTGDISVIAKVCLLYFIINVIIEGNLIKPLVMRHTLRLNPLVVIFAVMAM 315

Query: 320 VRTMGLLGLFIGPVLMALIAVI 341
              MG  G+ +   L A++ + 
Sbjct: 316 GELMGFWGIVLAIPLAAVVKIC 337


>gi|302554573|ref|ZP_07306915.1| membrane protein [Streptomyces viridochromogenes DSM 40736]
 gi|302472191|gb|EFL35284.1| membrane protein [Streptomyces viridochromogenes DSM 40736]
          Length = 388

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/357 (12%), Positives = 115/357 (32%), Gaps = 22/357 (6%)

Query: 8   PQGIMRWMIMFIILVSLYFL--------KGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           P+ + R M++ + LV+++ L         G    +L A  +     P  S   S+     
Sbjct: 2   PRWLPRAMVLALTLVAVFQLGSWAFHQLTGLLINILIAFFLALAIEPAVSWMASR-GVRR 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
                +  + V+ +    +  L      ++ +++                +       + 
Sbjct: 61  GLATFVVFIGVIIVAAGFVTLLGSILADQIIKMIEGF-------PAYLDSVIHWINTHFN 113

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           ++L    +            +++ +    +   A   G +F      ++ + +  F+F  
Sbjct: 114 TDLKRVDIQEGLLRSDWLRNYVQNSATGVLDVSAQVIGGLF-----QLLTIALFSFYFAA 168

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  + + + S+      A   +   I             ++A+  G+          VP
Sbjct: 169 DGPRLRRAICSVLPPARQAEVLRAWEIAVNKTGGYIYSRGLMALISGVAHFVLLQALDVP 228

Query: 240 SHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
               L V   +++  IP        A+ + +    + + A  + ++  +     +  L+P
Sbjct: 229 YAPVLAVWVGLVSQFIPTIGTYLAGALPMLIAFTVDPWYALWVLMFVVVYQQFENYVLQP 288

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            L    + +    +F  ++ G   +G +G  I    +A +       +       + 
Sbjct: 289 KLTSRTVDIHPAVSFGSVIAGTALLGAVGALIAIPAVATLQAFLGAYVKRYDVTDDP 345


>gi|254777409|ref|ZP_05218925.1| hypothetical protein MaviaA2_22461 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 382

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 98/290 (33%), Gaps = 15/290 (5%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
           ++ +          +  +    +    L F+    +  +  L  +V  + +      RWL
Sbjct: 64  WLDRHGLPRGGAVALVLLGGFAILGGILAFVVLQFIDGLPGLTEQVTQSIESTR---RWL 120

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
            + P  + + ++ +   +  ++L               +   A        +   + + +
Sbjct: 121 INGPAHLRSEQIDSAGNAAIEALHNNQAK---------LTSGALSTAATVTELVTAAVLV 171

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           +  L FF   G +I + +  +          +        +        ++A+ +   +G
Sbjct: 172 LFTLIFFLYGGRNIWRYVVQIVPAHARERVHEAGSAGYGSLIGYVRATFLVALTDAAGVG 231

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIE 288
           +   + G+P  + L  +  + A IP    +   F AV + LL KG I  A          
Sbjct: 232 AGLAIMGIPLALPLASLVFLGAFIPLVGAVVAGFLAVVVALLAKG-IVYALITLGLLVAV 290

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             I    L+P ++G  + +  L     +  G    G++G  +    +A +
Sbjct: 291 NQIEAHLLQPLVMGRAVSIHPLAVVLAISTGGVLAGIVGALLAVPTVAFL 340


>gi|311031355|ref|ZP_07709445.1| Predicted permease [Bacillus sp. m3-13]
          Length = 373

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 53/342 (15%), Positives = 121/342 (35%), Gaps = 20/342 (5%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
            S ++L     P + AL++ F   P+ +          +    ++ +++    +     +
Sbjct: 24  FSFFYLFSIAYPFIIALVLAFLINPLVNLLEKNGRLPRSLAVFLSIMALFATVVG----V 79

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               ++E+      +               +         L+ +  +   SL+   +  L
Sbjct: 80  VTLLIVEIVSGTEYLAKVVPGHFETLVVYVEQFVVNNILPLFNQVSTMFHSLEEGQQQSL 139

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSI--------------IFMIIALFFFYRDGFSISQQ 187
            TN  +     A+  G     +  ++              IF ++A FF  +D + +  +
Sbjct: 140 LTNIENIGGTVATTVGEFIQSFLTNLPKLLTWIPSVATVLIFSLLATFFISKDWYKLRGR 199

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              +          K+   + K           +     +++     +  V   + + +I
Sbjct: 200 FKKITPVKAQGSLTKVFVSLKKAFFGFMRAQATLISITTIIVLIGLLILRVEYAITVALI 259

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             ++ +IP  G  + F    I+L I GN+  A  L +   I + +  + + P ++   I 
Sbjct: 260 IGLVDLIPYLGTGLIFVPWIIFLAISGNLPLAIGLGILYLIVI-VQRQLMEPKILSSSIG 318

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L  L T   L  G + +G LGL +GPV + +   +W   ++ 
Sbjct: 319 LDPLATLVSLFVGFQLIGFLGLIVGPVTVVIFNTLWNAGVIK 360


>gi|168216394|ref|ZP_02642019.1| putative membrane protein [Clostridium perfringens NCTC 8239]
 gi|182381448|gb|EDT78927.1| putative membrane protein [Clostridium perfringens NCTC 8239]
          Length = 377

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/334 (13%), Positives = 121/334 (36%), Gaps = 10/334 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-------STFLAVIATVSVMC 72
           I+  LY   G   P +  + I F               S        +F   +  +  + 
Sbjct: 31  IMNFLYKFLGILKPFIWGIAIAFILNIPVKLIEKNLGNSKFFKGMKRSFSITLTFLFFIL 90

Query: 73  LFIVPLLFLFYYGMLEMKELVSKV--VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
              + +LF+    +  +  L++ +   L+          +++    +    +  + L+  
Sbjct: 91  AITLFILFVIPQLLSSISTLMNSIPEYLSQFEKFLEVNAINNSQSQVMMQNIINELLNLW 150

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           + +  ++   + T+ + ++  F        +++ L++I  I  L         +   + +
Sbjct: 151 KEILKVTSQIVGTS-LGYLLDFTLGITYGVINFFLALILAIYMLASKEILISQLKLIIYA 209

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                      ++ ++  ++     LG    A+  G++      +  +P  + + V+  +
Sbjct: 210 FVSKNKADRIIELGKMCNEMFSKFILGQCTEALVIGVLCFIGMIILKMPYALLISVVIGV 269

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            A+IP       T  S ++++  +   A    ++  +   +    + P +VG  I L  L
Sbjct: 270 TALIPVFGAFLGTIPSAFIILIIDPIKALWFIIFIIVLQQLEGNLIYPRVVGSSIGLSAL 329

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              F ++ G    G++G+ IG  +  ++  I K 
Sbjct: 330 WVMFAMIVGGSLFGIIGMLIGIPIFGVVFKILKR 363


>gi|13474074|ref|NP_105642.1| hypothetical protein mlr4869 [Mesorhizobium loti MAFF303099]
 gi|14024826|dbj|BAB51428.1| mlr4869 [Mesorhizobium loti MAFF303099]
          Length = 390

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 63/336 (18%), Positives = 124/336 (36%), Gaps = 14/336 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  + +F+ + +LYF + FF PV+ A ++  T  PI    + K+       A +  +
Sbjct: 31  RSLLVGIFIFMTVYALYFGRAFFMPVILAFLLALTLTPI-VRLLRKRGIPEVVSATLLVL 89

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +C+  +    L    +  +    S      +    + R L  I       E  T+   
Sbjct: 90  LSICVLAIAGYLLSGPVIDLLNNTSSIGQQLTERLAQLRRPLEKIMQVSHQVEQMTETSQ 149

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
            P   K+                  S      L    S+  + +   F    G    +++
Sbjct: 150 EPGVQKVAVAQ----------SGILSSAASNILSAGTSLTIIFVLSLFLLASGTMFYEKI 199

Query: 189 DSLGEHLFPA-YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                 L       ++   V + I    L +TII  G G V+G   W  G+P+ +  GV 
Sbjct: 200 IQSFASLSEKKRALRVVYDVEREISHYLLTVTIINAGLGTVIGLGLWALGMPNPLVWGVA 259

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK-TLRPFLVGGPI 305
            A+   +P  GA ++   V++  LI  +  +   L     +   +V+   + P +VG  +
Sbjct: 260 AALFNFLPYVGALLTIVLVAVMALISFDTISYALLAPAFVLLCDVVEGQFVTPMVVGRRL 319

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++  +  F  +       G +G  +   L+ +I V 
Sbjct: 320 EINAVAIFIAIAFWSWLWGFVGALMAVPLLVVIKVF 355


>gi|257065925|ref|YP_003152181.1| hypothetical protein Apre_0411 [Anaerococcus prevotii DSM 20548]
 gi|256797805|gb|ACV28460.1| protein of unknown function UPF0118 [Anaerococcus prevotii DSM
           20548]
          Length = 402

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/338 (13%), Positives = 109/338 (32%), Gaps = 16/338 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEES----------STFLAVIATVSVMCLFIVPLLF 80
           F P +   +I +      + F  K   +          S     ++ V ++C  I+ L  
Sbjct: 42  FQPFIIGGMIAYLVSIPMNYFERKLRANFPDKKYRKRISALSLFVSWVLIICCLILFLNI 101

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L    +  +    ++     +         S      +A + +    S        +   
Sbjct: 102 LIPRIVAVIFSFFNRWPEFIRETYETLN--SHAITRPYADKFYEYVNSFGWYEVRNAVMN 159

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS----QQLDSLGEHLF 196
             T+    +    +          ++I  +I+   F       +     + + +L     
Sbjct: 160 FITDKKTNLFSLTTGVLNSVSSSLITIFTIIVFSIFVLIYKDMLKTNGTRIIYALMSEKK 219

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
             Y  K+  +     +       I  +    +     ++ G+P+   + +   +  +IP 
Sbjct: 220 ADYINKVLSLSYNTFKDYIFSRLIAVVTLSALTFVGMFIMGIPNAGVISLFVGVSDLIPI 279

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             PI    +S  ++   +   A    ++  I   I +  + P + G  I LP +     +
Sbjct: 280 FGPIVGAGLSAVIIFLESPVKALIFLIYDVIIQQIQENIIYPAIAGEKIGLPAVWVLAAI 339

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             G    G+ G+ IG  + ++I  ++ E I    + KE
Sbjct: 340 TIGGSLFGIWGMLIGIPVASVIYTLFHEFIDNKLKAKE 377


>gi|169343072|ref|ZP_02864099.1| putative membrane protein [Clostridium perfringens C str. JGS1495]
 gi|169298982|gb|EDS81056.1| putative membrane protein [Clostridium perfringens C str. JGS1495]
          Length = 366

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 55/336 (16%), Positives = 115/336 (34%), Gaps = 4/336 (1%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           ++ +++ +     P L A II +   PI + F  K + S     VI  +  +    +   
Sbjct: 34  VMSAIHTILAVLLPFLLAFIIAYILNPIVNLFSKKFKLSRGISIVITYLIFVTSISLAAT 93

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ-SLKILSE 138
           +L       + EL+  +         V    ++I       E    +L H   +  I   
Sbjct: 94  YLLPKLYTSLIELIDNIPAFTN---YVQNLFTEIMASFKVPEGINSYLPHGDTNKLITFI 150

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             + T   +++   A       +++    +  I  L    +     S+    +       
Sbjct: 151 GSMVTVLSNWLLDAAISLTSSIINWIFGFLISIYVLVDKDKFLAHSSKVTRIIFGKNLGN 210

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              +   I+ + I +      I ++  GL+      +      + L V+  I  MIP   
Sbjct: 211 EILEFINILNEKIGTYVGIKAIDSLIIGLLAFVGLTVIKSEYALLLSVVVGITNMIPYFG 270

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P     V  ++ +  +   A  + ++  I        L P L+G  + L       G+  
Sbjct: 271 PFIGMVVGFFINVFISPMKAVIVLIYLFILQQFDAWYLDPKLIGNRVGLSPFLVILGVTL 330

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G    G +G+ +G  +M++I +   + I   +   E
Sbjct: 331 GGAIYGPIGMILGSPVMSVIRIYTLKLIKKFEYRAE 366


>gi|325833632|ref|ZP_08166081.1| putative membrane protein [Eggerthella sp. HGA1]
 gi|325485556|gb|EGC88025.1| putative membrane protein [Eggerthella sp. HGA1]
          Length = 429

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/339 (12%), Positives = 114/339 (33%), Gaps = 14/339 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES--S 59
           R  ++    +   ++  +++     L      V+ +++I F      +            
Sbjct: 16  RSFLIVWTIVGGILLTGVLVYLFNILSVPIGIVIWSIVIVFCLRGPVNKLEKLGVPRVAG 75

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH----GIPVPRWLSDIPG 115
           T +A +    V+ L  + +    +    +   L+  +    Q     G  +    +D+  
Sbjct: 76  TTIAYVLMFVVLALVGLLMFSPAFGVGDQFTNLIESIPGYVQTIAGWGNDLYTRYADVLQ 135

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
                      L    ++   + TF + +    +       G   ++  +++ F ++  F
Sbjct: 136 NDTVQTWINNALD---AIVSWASTFARDSANGVVA-----IGTGLVNTFVALGFALVVAF 187

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           +   +   + ++   L         + +     +V+     G  +     G+     +  
Sbjct: 188 WILMELPQLGRECMRLVNPKRHEDLEMLHVTFTRVMGGYIKGTLLQCAIIGVGCVVLFGA 247

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
            G+P++ ALG I  ++ +IP   P    A++  + +  + + A            IV   
Sbjct: 248 IGIPNYAALGGIAGLLNIIPIVGPWLGGALAAIVGVFVSPWIAVIALGGTIAIQQIVYTF 307

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
           + P ++   + +    T   L+ G    G +  F G ++
Sbjct: 308 ISPKIMANSVDVHPALTLIALMAGSAIGGAMSGFTGSLV 346


>gi|295400285|ref|ZP_06810264.1| protein of unknown function UPF0118 [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294977560|gb|EFG53159.1| protein of unknown function UPF0118 [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 342

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 50/348 (14%), Positives = 121/348 (34%), Gaps = 26/348 (7%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           R +I  +++  LY ++     +L   I  F    +      +   +   + ++  V+V+ 
Sbjct: 16  RIVIFSVLIFILYLVRSILNIILLTFIFSFLMNGLVDFISKRIRINRKIIVLLLYVAVVS 75

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           + +  ++      + E+ +L+ ++            +                       
Sbjct: 76  ILVYGVVKYLPVVINEISQLIKQLTEFYSKPQDNIVF---------------------NY 114

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           +    + +  T  ++F   +  ++        L I+  +I   FF  +   I    +   
Sbjct: 115 IIEQLKHYEITTYLNFGMTYLIKYFSDIGSVGLQILLALILSLFFLLEKERIISFTNRFK 174

Query: 193 EHLFPAYWKKIS---RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                 ++ ++    R   +          IIA     +  +  W+   P    LG++  
Sbjct: 175 YSKISPFYNELEYFGRKFVRTFGKVIEAQFIIATVNMAITVAGLWIMDFPQLFGLGILIF 234

Query: 250 IMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            + +IP  G  IS   +       G I     + +  A+   +    L P L+     LP
Sbjct: 235 FLGLIPVAGVIISLFPLCFIAYSIGGIMKVVYILIMIAVIHALEAYVLNPKLMSSKTNLP 294

Query: 309 FLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKEK 355
              TF  L+      G+ GL +G PV + ++ V+  +++   +++ ++
Sbjct: 295 VFYTFIVLIFSEHFFGVWGLILGIPVFVFILDVLGVKTVQGKRDDDDE 342


>gi|75906781|ref|YP_321077.1| hypothetical protein Ava_0558 [Anabaena variabilis ATCC 29413]
 gi|75700506|gb|ABA20182.1| Protein of unknown function UPF0118 [Anabaena variabilis ATCC
           29413]
          Length = 362

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 59/328 (17%), Positives = 124/328 (37%), Gaps = 17/328 (5%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            + ++  YF   F    L+A++    ++P+   F  +   + T   VI  +  + LF + 
Sbjct: 26  LLSVLFRYFQSPFTILSLAAILAFLLNYPV--KFFERARITRTQAVVIVLLVTLTLFGIL 83

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
            + L    + +  +L++K+          P WL+     +   E + K    P  L+++S
Sbjct: 84  AVTLVPMLIDQTVQLLNKI----------PDWLTASQANLEHFERFAKQRRLPLDLRVVS 133

Query: 138 ETFLKT--NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                +  + +  +   A       L   L+ I +++  F+    G  +   L +L    
Sbjct: 134 NQINASIQSVVQQLASGAVGLAGTLLSGLLNFILVVVLAFYMLIYGDRVWYGLMNLLPSK 193

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 K  ++     ++ FL   ++ +   + L   + +  VP  +   ++  I  +IP
Sbjct: 194 IRLPLTKSLQLN---FQNFFLSQLLLGLFMIVALTPIFLILKVPFALLFAILIGISELIP 250

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                    +   L++  N + A  + +   I   I D  L P L+G  I L  +  F  
Sbjct: 251 FIGATLGIGLVTILVLLQNWWLAVQVAIAAIIMQQIKDNLLGPKLLGNFIGLNPIWIFVA 310

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           ++ G    GLLG  +   +   I   + 
Sbjct: 311 ILMGYEIAGLLGTLVAVPIAGTIKGTFD 338


>gi|78223969|ref|YP_385716.1| hypothetical protein Gmet_2773 [Geobacter metallireducens GS-15]
 gi|78195224|gb|ABB32991.1| protein of unknown function UPF0118 [Geobacter metallireducens
           GS-15]
          Length = 350

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 49/337 (14%), Positives = 114/337 (33%), Gaps = 26/337 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           MR              + ++L++ +  +   + +L++L+I +   P       K      
Sbjct: 1   MRPRDAAHIAWFLAATLGVVLLAGHVARHSLSAILTSLVIAYLLNPFMKCLERKGLGRIP 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            +A++     + +F   L  L  Y   +++               VPR++ ++       
Sbjct: 61  AIAILYLCIAVIMFFS-LFALIPYLNHQLEAF----------PRAVPRYVQNL---ERVM 106

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFG-------MIFLDYCLSIIFMIIA 173
           E+W   LS          T+L  +  D + + A              L    +++   I 
Sbjct: 107 EVWKARLSPYYG--SDEGTWLIASAQDSLKKLALDVSGKGYQELKAALFGLFNLVLAPIL 164

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           +FF           +     H     ++++   +   +    +      +  G++   A 
Sbjct: 165 VFFMLSSKQFFKDLILRFVPHRERHSFREVGGRIKDSLERFVMAQFFDCLLVGILSALAL 224

Query: 234 WLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELF 290
           +L G+   +  G +    +++P  G  ++    ++  Y      +        +  I + 
Sbjct: 225 YLLGIEFPLLNGFVAGFASVVPYVGVMVAVIPPALMGYAETGDLMIIPKVCAAYFVINVI 284

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           I    ++P L+ G ++L  L   F L+     MG  G
Sbjct: 285 IEGNLIKPLLMRGTLRLNPLAVVFALMALGELMGFWG 321


>gi|323496843|ref|ZP_08101880.1| hypothetical protein VISI1226_21744 [Vibrio sinaloensis DSM 21326]
 gi|323318102|gb|EGA71076.1| hypothetical protein VISI1226_21744 [Vibrio sinaloensis DSM 21326]
          Length = 357

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 54/349 (15%), Positives = 124/349 (35%), Gaps = 14/349 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +    I+    +++YF     AP+L A+++ +   WP+    +S+     T   V+
Sbjct: 15  DPHAVSLVAILLFGFITIYFFGNLIAPLLVAIVLAYLLEWPVSQ--LSRLGVPRTLAVVL 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +    L +V +  L      ++  LV+ +       + +  +++++P      + +  
Sbjct: 73  VILGFSSLMLVAVFGLVPTIWQQVGNLVNDIPTMY---LGLQSFIAELPQRYPELDNFQI 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S   + K  +    +T     +    S          + +I + + +FF  +D   + 
Sbjct: 130 VESLVTNAKNQAIGMGETVLKGSLASLVS-----LATLAVYLILVPLLVFFLLKDKQEMI 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +        +K +   + + I +   G  +  +  G V    + +  +   V L 
Sbjct: 185 EMASGILPRNRRLAYK-VWHEMNEQISNYIRGKVMEILIVGGVSYVTFAILDLRYSVLLA 243

Query: 246 VITAIMAMIP-GGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V   +  +IP  GA      V+ + L   G       L +   I   +    L P L   
Sbjct: 244 VAVGLSVLIPYIGAAAVTVPVAMVGLFQWGLTPQFYWLLIAYGIIQALDGNVLVPVLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            + L  +     ++      G  G+F    L  L+  +W       +++
Sbjct: 304 AVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWNALPSHDEDD 352


>gi|302544660|ref|ZP_07297002.1| integral membrane protein [Streptomyces hygroscopicus ATCC 53653]
 gi|302462278|gb|EFL25371.1| integral membrane protein [Streptomyces himastatinicus ATCC 53653]
          Length = 369

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 50/346 (14%), Positives = 117/346 (33%), Gaps = 11/346 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +++ +  V+L+FL   ++ ++  LIIG     +               AV A+   +  
Sbjct: 32  LLVLGMTAVALWFLGQMWS-IVWPLIIGLLLTTLTWPLTRFLRGHGWPPAVAASAVTVLF 90

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +V    +    +    +    V    Q    V  W +  P  +  +++     S    L
Sbjct: 91  LLVATGVVALIAVPVASQSGELVDGVTQGMHKVREWAAGPPLNIDDAQIAQATDSAAARL 150

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           +  + + + T                 +   ++ +  +  +FFF +DG      L     
Sbjct: 151 QKSASSMVTTVVTGV---------NAVVGGLVTAVLALFLMFFFLKDGPRFLPWLARQLP 201

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                    ++      + +      ++ + + + +G    + GVP  + L V+T + A 
Sbjct: 202 GRLATDVPTVAARAWDTLGAFVRSQALVGLLDAVFIGLGLLILGVPLVLPLAVLTFVSAF 261

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +P  GA  +     +  ++     +A        +   +     +P +    + L     
Sbjct: 262 VPIVGALFAGFVAVLIAMVANGPMDALITLAIIVVVQQLEGNVFQPMIQSRGLGLHAAVI 321

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
              +  G    G++G  +   + ALIAVIW      + +  ++   
Sbjct: 322 LLAVTLGASLAGVVGSLLAVPVAALIAVIWNYLREQLSDPLQEPEH 367


>gi|291546514|emb|CBL19622.1| Predicted permease [Ruminococcus sp. SR1/5]
          Length = 293

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 82/232 (35%), Gaps = 5/232 (2%)

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +L  +   +P        + L     + +    S  G I        I    A +  +
Sbjct: 29  IMKLVDQVQFNPDQAIKWGISLLGNGAGNMMNTTMSAVGSIVSGLATFFIAFSFACYVLF 88

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL----GMTIIAIGEGLVLGSAYW 234
           +    +  Q+  +     P         V  +   TF     G  + A+  G +      
Sbjct: 89  QK-EKLHVQIRKVFFAFLPKKKADAFLKVCSLTYRTFANFLAGQCLEAVILGCMFVVILS 147

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           +  +P  + +GV+ A  A+IP        AV  +L+   N   A    +   +   I   
Sbjct: 148 ILRIPYALLIGVLIAFTALIPIFGAFIGCAVGSFLIFMVNPKQAILFIIVFLVLQQIEGN 207

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            + P +VG  + LP +     +  G   MG++G+ +   L+++   I++E +
Sbjct: 208 LIYPHVVGESVGLPSIWVLAAVTIGGNLMGIVGMLVFIPLLSVFYTIFREFV 259


>gi|295699812|ref|YP_003607705.1| hypothetical protein BC1002_4201 [Burkholderia sp. CCGE1002]
 gi|295439025|gb|ADG18194.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1002]
          Length = 364

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 88/216 (40%), Gaps = 4/216 (1%)

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMI---IALFFFYRDGFSISQQLDSLGEHLFPAY 199
             G D     A   G+  +    ++I+++   I  F   +DG  +     +L        
Sbjct: 133 ETGSDKAVPLARSLGLGVVHAASNLIYLVLIPILSFLLIKDGERMRDAFLALLNRRHRVL 192

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
           W +I   V  ++      +  +++      G A+ L GVP    L V   ++  +P   P
Sbjct: 193 WSEIVDDVNVLLSKYVRALLFLSLATLFGYGVAFSLLGVPYAFLLAVSAGLLEFVPFAGP 252

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           ++  A+++ + +     +   L ++  +     D  L P+L+   +++       GL+ G
Sbjct: 253 LAAVAITLVVAVFSGYPHLLWLVIFIGLYRLFQDYVLNPYLMSEGVEVSPFLVIVGLLAG 312

Query: 320 VRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKE 354
            +  G+ G+F+  PV+  L  VI +  +     +++
Sbjct: 313 DQLGGVAGIFLAVPVIATLKIVIGRARVFYSASHEQ 348


>gi|325263797|ref|ZP_08130530.1| membrane protein [Clostridium sp. D5]
 gi|324030835|gb|EGB92117.1| membrane protein [Clostridium sp. D5]
          Length = 449

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 49/384 (12%), Positives = 115/384 (29%), Gaps = 34/384 (8%)

Query: 9   QGIMRWMIMFIILVSLYFLK-----------------GFFAPVLSALIIGFTSWPIYSSF 51
           Q   R M +F+++ +                      G   P++  L I +   PI    
Sbjct: 36  QKFSRGMTIFVVIAACIIFYFALLRLPAISGVFKEIFGVLKPIVYGLAIAYLLNPIVDFV 95

Query: 52  ISKKEE---------------SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV 96
                                S         + ++ + I     +       +++++  V
Sbjct: 96  EEHLRPFLEKKLQDQKRIHAISRGTGIFAGVLVLLFIIIALFNMMIPELYGSIRDMILTV 155

Query: 97  VLANQHGIPVPRWL--SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFAS 154
                  +     +   D   G   S +  +     Q+             +  +     
Sbjct: 156 PSQLNQLVDKVMEMNSQDSTLGQLLSNILKEATDFIQTWMRTDLLNQINVVMSNLTVGVI 215

Query: 155 RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRST 214
                 L+  + II  I  LF   +      + + ++ +         ++    ++    
Sbjct: 216 NIISELLNVVIGIIISIYVLFSKEKFASQSKKLVYAVFKPSHANMILHLTIKSNEIFGGF 275

Query: 215 FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGN 274
            +G  I +   G++      +  +P  + + VI  +  +IP   P      S  L++  +
Sbjct: 276 IIGKIIDSAIIGVLCFIGLSMLKMPYTLLVSVIVGVTNVIPFFGPYIGAIPSAILIMLTD 335

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
                   L+  +   +    + P ++G    L      F ++ G    G++G+ +G   
Sbjct: 336 PKMGIYFILFILVLQQLDGNVIGPKILGDSTGLSAFWVVFAILLGGGLFGVIGMILGVPT 395

Query: 335 MALIAVIWKESIMAIKENKEKISS 358
            A+I  I    I  + E K+  + 
Sbjct: 396 FAVIYYIINMLINHMLEKKKLPTE 419


>gi|315650632|ref|ZP_07903691.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315487107|gb|EFU77430.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 411

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 54/328 (16%), Positives = 120/328 (36%), Gaps = 21/328 (6%)

Query: 31  FAPVLSALIIGFTSWPIYSS-----------FISKKEESSTFLAVIATVSVMCLFIVPLL 79
            + V   +++ F + P+Y                K ++       IAT++ + + I  + 
Sbjct: 46  VSSVFYGVVMAFLTAPVYDKISDRLAKIFSSLFPKWKKPIKLAKFIATLACLVILIFVIF 105

Query: 80  FLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            L    + E+   +S V+    +G + +  WL DI       +L    + + Q +     
Sbjct: 106 ALIMMIIPELVNSISNVINYAPNGMLKLEDWLKDILNKNP--DLEKLVIGNYQDISDRLS 163

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYC---LSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            F  TN +  +  +        L+     ++II  ++ + +      +++ Q   +   +
Sbjct: 164 DFATTNVLPNVNTYIKNLSSGVLNALGVIVNIIIGMMVMMYLLNMKTTLASQAKKIVYAI 223

Query: 196 FPAYWKKISRIVPKVIRSTF----LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                        + I+  F    +G  I +I  G++      +  +P  + + V+  + 
Sbjct: 224 AGVKIGNEIVTEARYIKDMFEKFIVGKIIDSIIIGIINYIFMAVIHMPYALLISVVVGVT 283

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP   P      SI LL+  +   A    +W  +   +    + P ++G    LP   
Sbjct: 284 NVIPFFGPFIGAIPSIVLLLLISPLTALQFAVWILVLQQVDGNIIGPKILGQTTGLPSFW 343

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIA 339
             F ++      G++G+ I     A+I 
Sbjct: 344 VLFSILLFGGLFGIVGMIIAVPTWAIIY 371


>gi|52081417|ref|YP_080208.1| membrane protein YtvI [Bacillus licheniformis ATCC 14580]
 gi|52786793|ref|YP_092622.1| YtvI [Bacillus licheniformis ATCC 14580]
 gi|319647325|ref|ZP_08001547.1| YtvI protein [Bacillus sp. BT1B_CT2]
 gi|52004628|gb|AAU24570.1| conserved membrane protein YtvI [Bacillus licheniformis ATCC 14580]
 gi|52349295|gb|AAU41929.1| YtvI [Bacillus licheniformis ATCC 14580]
 gi|317390672|gb|EFV71477.1| YtvI protein [Bacillus sp. BT1B_CT2]
          Length = 371

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/340 (15%), Positives = 102/340 (30%), Gaps = 12/340 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  +     Y+      P + ALI+     P                  I     +  
Sbjct: 16  LFLTAVCGAVGYYSFPLTYPFVIALILAIMINPFVEWLDKLTGFPRGVNVGIVLFGFLTA 75

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               L  +    +     L   + L                     +EL         + 
Sbjct: 76  GAGFLTLVVAEIVSGTAYLAKILPLQFNKAALYIESFFTNQIMPLYNELAAFFDGLEAAQ 135

Query: 134 KILSETFLKTNGIDFIPRFAS----------RFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
           +    T ++  G +     A            F     +    +IF ++A FF  +D   
Sbjct: 136 QESIITQVQNLGSELASGTALLLSKILETVPLFFAFLPNMAAVLIFSLLATFFISKDLHK 195

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           I  +  S+      +    +   + + +         +     +++     +  V   VA
Sbjct: 196 IQNKARSVLPDRLISGAAAVYAELKRALAGFVKAQLTLVAMTMVLVLIGLSVLKVNHAVA 255

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           +  +  ++ ++P  G    F    +YL     +  A  L +   I + +  +   P ++ 
Sbjct: 256 IAFLIGLVDLLPYLGTGSVFVPWIVYLAAAKQLPLAIGLGILY-IVVLVFRQLAEPKILS 314

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
             I L  L T   L  G +  G LGL +GP L+ LI  ++
Sbjct: 315 RSIGLHPLGTLIALFAGFKLFGFLGLIMGPALLVLIQALF 354


>gi|325267983|ref|ZP_08134630.1| permease [Kingella denitrificans ATCC 33394]
 gi|324980524|gb|EGC16189.1| permease [Kingella denitrificans ATCC 33394]
          Length = 358

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/336 (13%), Positives = 123/336 (36%), Gaps = 8/336 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I+   ++   L ++Y L     P + A ++ +   P+      K   + +  ++   +  
Sbjct: 14  IIGIAVIGSFLFAVYHLSDVLTPFIVAAVLAYILNPLVCKIE-KLGINRSRASMWVMLFT 72

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             L +  LL +    + ++  ++ ++     +          +P      +       + 
Sbjct: 73  FFLIVALLLVIVPMLLQQLHLIIQRIPKLVDYVQT-----QALPWLNQKFDKHIILDENT 127

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +  + +   +    +        + G        ++I + + L++F  D       + +
Sbjct: 128 ITAWLRANASVIQGNLQKTLPAVMQSGGALASGLSNLILLPLLLYYFLLDWSHWEDGVRT 187

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +    +   + +I+  +  V+     G  ++ +  G++ G+   L G+ S  A+G++  I
Sbjct: 188 MIPRRYLDGYNRIAGNMDTVLGEFLRGQLMVMLIMGMLYGTGLMLTGLDSGFAIGMVAGI 247

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF--IVDKTLRPFLVGGPIKLP 308
           +  +P     +   ++    +         L +WG   +   +    + P +VG  I L 
Sbjct: 248 LVFVPYLGAFTGLLLATLAAVLQFNTWGGLLAVWGVFAVGQLLESFLITPKIVGDRIGLS 307

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                F L+   +  G +G+ I   L A+  V+ +E
Sbjct: 308 PFWVIFSLMAFGQLFGFVGMLIALPLAAICLVLIQE 343


>gi|331083327|ref|ZP_08332440.1| hypothetical protein HMPREF0992_01364 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330404408|gb|EGG83953.1| hypothetical protein HMPREF0992_01364 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 379

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 116/334 (34%), Gaps = 6/334 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +  F      A I+      +     SK +  +  L     + +  LF+V +L++    
Sbjct: 41  IVFPFLLGAAMAFILNVPMSFMEKRLFSKTKGKAKKLKRPICLVLAILFVVAILWIVLLV 100

Query: 86  ML--EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
           ++      + S  V      I + RW  DI       E+W   L       I +      
Sbjct: 101 VIPEVASTVASLSVNIEAALIKLQRWAMDIFEDNKQIEVWIASLQFDWDGIIHTAFGFLK 160

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK-- 201
           NG   +           ++  ++     +   +       ++ Q+  +    F       
Sbjct: 161 NGAGNVLNSTMTVAKTVINSVMNFCVAFVFACYILLQKEKLAVQIQKILYAFFSKKVVTK 220

Query: 202 --KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
              I+ +  K   +   G    A+  G +   +  +   P  + +GV+ A  A+IP    
Sbjct: 221 VLDIASLSYKTFANFVTGQCCEAVILGTMFFISMSILRFPYALLVGVLIAFTALIPIFGA 280

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                +  +L++  +   A    +   +   +    + P +VGG + LP +     +  G
Sbjct: 281 FIGCFLGTFLILVADPMKAIAFVILFLVLQQVEGNLIYPHVVGGSVGLPSIWVLVAVTVG 340

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              MG++G+ +   + +++  +++E +    + +
Sbjct: 341 GSLMGIVGMLVFIPICSVLYALFREMVYKRLKER 374


>gi|32471020|ref|NP_864013.1| permease [Rhodopirellula baltica SH 1]
 gi|32396722|emb|CAD71687.1| predicted permease [Rhodopirellula baltica SH 1]
          Length = 412

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 53/334 (15%), Positives = 119/334 (35%), Gaps = 9/334 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           MR   + ++L +LY+ +    PV +A+++  T  PI      +    S   A+     ++
Sbjct: 23  MRICAVMLVLYALYYARSLVIPVATAIVLYLTLRPI-VRHAKRIGVPSPVGAIGIIAGIL 81

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
               +    +       +      + +A Q    +   L D+       EL         
Sbjct: 82  LTLGLGTYLVLEPAKETIGAAPQHLAVAKQKLSFITDRLKDVDQAT--EELAETEDVAAG 139

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            +       ++     +   ++   G   +   L+I   +  L+F    G  + + +   
Sbjct: 140 EVASEKPVPVEIKQPTWTSGWSYLSGTGNVVSFLTICIAL--LYFLLATGDDLLRSVMRS 197

Query: 192 GEHLFPAYW-KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
             +        ++   V + + S    ++ I  G G+ +    W+ G+PS +  GV+   
Sbjct: 198 LPNFSSRRKLVEVIENVQEGLGSYLAQVSAINAGLGVCVAVVMWMLGMPSPIMWGVMAFA 257

Query: 251 MAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
              IP    I  +     + LL     + A  + L       +  + + P ++G  + + 
Sbjct: 258 FNFIPIVGAIAGALIIFFVALLNFEPTYYAFVVTLAFMTLTSLEGQFITPAILGRSMSMS 317

Query: 309 FLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            +  F  +V      G++G+F+  P+L+A     
Sbjct: 318 PVLVFLSIVVWGWMWGIMGVFLSVPILIAARMAC 351


>gi|145637214|ref|ZP_01792876.1| lipoprotein NlpI [Haemophilus influenzae PittHH]
 gi|148827377|ref|YP_001292130.1| hypothetical protein CGSHiGG_03820 [Haemophilus influenzae PittGG]
 gi|260580878|ref|ZP_05848703.1| lipoprotein NlpI [Haemophilus influenzae RdAW]
 gi|145269659|gb|EDK09600.1| lipoprotein NlpI [Haemophilus influenzae PittHH]
 gi|148718619|gb|ABQ99746.1| hypothetical protein CGSHiGG_03820 [Haemophilus influenzae PittGG]
 gi|260092501|gb|EEW76439.1| lipoprotein NlpI [Haemophilus influenzae RdAW]
 gi|301168892|emb|CBW28486.1| predicted inner membrane protein [Haemophilus influenzae 10810]
 gi|309972617|gb|ADO95818.1| Putative permease (PerM family) [Haemophilus influenzae R2846]
          Length = 349

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 53/341 (15%), Positives = 117/341 (34%), Gaps = 11/341 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             + +PQ +    I+    +S+YF     AP+L AL++ +      +      +      
Sbjct: 11  RRLSDPQAMGLLAILLFGFISIYFFGDLIAPLLIALVLSYLLEIPINFLNQYLKCPRMLA 70

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++   S + L  V  L L      +   L+S +            WL ++P        
Sbjct: 71  TILIFGSFIGLAAVFFLVLVPMLWNQTISLLSDLPAMFNKS---NEWLLNLPKNYPELID 127

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           ++   S   S++     F ++     +        M  +   +    + + +FF  +D  
Sbjct: 128 YSMVDSIFNSVREKILGFGESAVKLSLASI-----MNLVSLGIYAFLVPLMMFFMLKDKS 182

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + Q +           +K + + + + I +   G  +  +   L+    + + G+   +
Sbjct: 183 ELLQGVSRFLPKNRNLAFK-VWKEMQQQISNYIHGKLLEILIVTLITYIIFLIFGLNYPL 241

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFL 300
            L     +  ++P  GA I    V++  L +  I       +       ++D   L P+L
Sbjct: 242 LLAFAVGLSVLVPYIGAVIVTIPVALVALFQFGISPTFWYIIIAFAVSQLLDGNLLVPYL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
               + L  L     ++      G  G+F    L  L+  +
Sbjct: 302 FSEAVNLHPLIIIISVLIFGGLWGFWGVFFAIPLATLVKAV 342


>gi|301168518|emb|CBW28108.1| putative membrane protein [Bacteriovorax marinus SJ]
          Length = 348

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 48/346 (13%), Positives = 109/346 (31%), Gaps = 17/346 (4%)

Query: 1   MRETMLNPQGIMRWMI---MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           M+  M  P+ +        + + L SL+       P+  A ++     P+    + +   
Sbjct: 1   MQRAMSKPEKVRLVFFILGLILFLFSLWLFPRVSIPLSVAYVVSLIFNPV-VPMVMRFGL 59

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
             +    I  ++++ LF  PL+ +      E + +   +           + L+      
Sbjct: 60  KKSTSVNIVFLAILFLFTYPLIKITPTITNEAQNVQYYLPKVESFLKTEYKNLTSKIEEK 119

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
               +  + L +       + T +      ++                    + + +FF 
Sbjct: 120 TGYVVGNEILDNSLDYGQKATTEILLQVPKYLGSIIEWI-----------FLVPLFVFFI 168

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            +DG         +  +     +  +S    + +        + A   G+++ +      
Sbjct: 169 LKDGKEFKSNFLKIVPNSMFERFYYLSHQFNRQLGDYIFAKFVEASIVGIIITTGLLFLD 228

Query: 238 VPSHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KT 295
           V   + LG++     +IP   PI       I+ L +              I    +D   
Sbjct: 229 VRFALLLGLVAGFTNVIPYLGPIIGTIPAIIFGLAEYGWGPTFGAITILYIVANAIDIAL 288

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           + P LV   + L  L     ++ G    G++G+ I   L A   +I
Sbjct: 289 VFPILVSKIVNLHPLMVVISVILGSTFFGVVGMIISIPLAAAFKLI 334


>gi|89514122|gb|ABD74918.1| hypothetical protein [Sinorhizobium fredii]
          Length = 122

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 64/121 (52%)

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  +  G +T +++ +P   P+ + +V++ L I+G ++ +  +  WG + +  +D  + P
Sbjct: 1   PQALLFGFLTFVLSFVPIDPPLVWGSVALGLFIRGAVWWSFFVAAWGLLLVSSIDNVIGP 60

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +++G     P L  FFG +GGV   G +G+F+GP L+A+   ++     A  E +   + 
Sbjct: 61  YVLGKTDNRPVLLGFFGFLGGVVAFGFIGIFLGPTLLAVAYSLFLGWTTAEVEERRHPTE 120

Query: 359 N 359
            
Sbjct: 121 Q 121


>gi|255100081|ref|ZP_05329058.1| hypothetical protein CdifQCD-6_04695 [Clostridium difficile
           QCD-63q42]
          Length = 350

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 48/318 (15%), Positives = 108/318 (33%), Gaps = 4/318 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           + I  ++ + +Y    + AP     II     PI     +K   +     ++ +   + +
Sbjct: 19  FCIYTLLFIFIYKAFPYIAPFFLGAIIALMINPISQKLENKFHINKGISTLVLSFLAVAI 78

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
                  +    M E+   ++ +    +       +  +       S     +    Q +
Sbjct: 79  VSTVTTIIVINSMKELMGFLNNISANPEDISNTIMYFLNKINDFMKSFQEIANFDVEQLV 138

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
              S   ++      +               + II + IA +F  +D   I     ++  
Sbjct: 139 NKFSGEVMQIT--KNLLTSILGLATSIPYIIIFIITLFIATYFIAKDLDKIENSFYNMFT 196

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  K + +     +       TI+       +  ++ L G+   + +G + A+M +
Sbjct: 197 VDVRKKVKNVKKEAGLSLVGYIRAYTILMAITFFAIWGSFALFGLKYGLIVGFVGALMDL 256

Query: 254 IPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP    I  +  V +Y  +  N F A  + +     L ++ + L P LV   + L  L T
Sbjct: 257 IPFLGIITIYLPVIVYYFLIKNYFIAISMTVI-FFVLSLIREILEPKLVSVNVGLNPLAT 315

Query: 313 FFGLVGGVRTMGLLGLFI 330
              +  G++  G++G+  
Sbjct: 316 LAAIFIGIQVKGIIGVIF 333


>gi|328675694|gb|AEB28369.1| Putative permease PerM (YfgO) [Francisella cf. novicida 3523]
          Length = 368

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 118/356 (33%), Gaps = 6/356 (1%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           N + I+   +M    + L FL  + AP+L+AL+I +    + +      +       V+ 
Sbjct: 16  NNEPIVFVGLMLFFYLVLTFLGDYIAPILAALVIAYLLDTLVNILQKFTKLKRI---VLV 72

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +  +   I  L  +F    + + +L+  V  A+     +   L ++           + 
Sbjct: 73  YIVYILFLIALLSLIFVLLPIIINQLIDFVKQASHILSTLKTSLEELSVKYPTILTEDRI 132

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            S       +    + +N   FI +  +    +     + +  + + +F+F +D   +  
Sbjct: 133 NSIVSWFDSIDWKKISSNVGSFILQNTATTLPVLFSVLIYLFLVPLMVFYFLKDKEKMIN 192

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
              S       A +   + + PK +     G  I  I    +    +    +   V L V
Sbjct: 193 WFKSFLPEENGALYYVWNDLKPK-LADYVRGKAIELIIVSTLTYVGFAYFNLNYAVLLAV 251

Query: 247 ITAIMAMIP-GGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
              +  +IP  G  I    V  + +L  G       + +   +   +    L P L    
Sbjct: 252 GVGLSVIIPYVGMVIITIPVIMVGILQFGLNGTFVSMLIVFFVIQALDGNLLVPLLFSEV 311

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           + +  +     ++      GL G+F    L  L           +K  K +   N 
Sbjct: 312 LDMHPVGVVSAILIFGGIWGLWGIFFAIPLGLLFISGVNMLRNHLKGKKTQTDINL 367


>gi|293375475|ref|ZP_06621754.1| putative membrane protein [Turicibacter sanguinis PC909]
 gi|325842418|ref|ZP_08167677.1| putative membrane protein [Turicibacter sp. HGF1]
 gi|292645875|gb|EFF63906.1| putative membrane protein [Turicibacter sanguinis PC909]
 gi|325489646|gb|EGC92009.1| putative membrane protein [Turicibacter sp. HGF1]
          Length = 362

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 49/313 (15%), Positives = 107/313 (34%), Gaps = 10/313 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L A ++ +   P+    I +          +  + +       + +     + E+ 
Sbjct: 49  LFPFLIAFLLAYVIHPL-ILCIDRLRLPRVLSVFLFYLFIFGSLYGVISWFLPTILRELH 107

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           +LV  +       +   +    I    +   +    L    S      T ++        
Sbjct: 108 DLVMNLPTY----LEAIQTQIMIFDQKFNLNVSQYFLGDYSSWMSTLTTHMREITGWTFN 163

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              S  G       ++II + IALF+F +D   +   L  +    F  +   I+ ++ + 
Sbjct: 164 MIFSIIGS-----LVNIIIVPIALFYFLKDFEKMMHGLLKIVPRRFRHHAVSIAGLLDES 218

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G+ +I +   ++      +AG+   +  GV+  +   IP   P       +   
Sbjct: 219 LGSYIRGVFLIMVTLSIIATILLMIAGIDYALLFGVLIGLTDFIPFIGPFIGAIPVVVFA 278

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +  +      + +  AI   I    L+PF++G  + +  L     +V     MG  G+F 
Sbjct: 279 LSISWNKVIIVIIILAILQCIEANFLQPFIIGRNLDMHPLLIMMIMVVAATIMGFQGVFF 338

Query: 331 GPVLMALIAVIWK 343
              +  +I    +
Sbjct: 339 ALPVFLMIRTFSR 351


>gi|114328699|ref|YP_745856.1| hypothetical protein GbCGDNIH1_2035 [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316873|gb|ABI62933.1| hypothetical membrane spanning protein [Granulibacter bethesdensis
           CGDNIH1]
          Length = 438

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/341 (13%), Positives = 116/341 (34%), Gaps = 21/341 (6%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           ++F + ++L+       P + A  I +   P+      +        A +   +++ L +
Sbjct: 96  VLFAVWLTLHLFASILLPFVMAGGIAYFLDPLAGRLE-RLGLPRGVAAGLLIAAMILLGL 154

Query: 76  VPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +  L L+   + ++  L+S++             WL  +           +    P  + 
Sbjct: 155 LFALLLYPLIVAQLGILLSRLPAYVALVRDTAIDWLGRV-----------QERLGPGFVD 203

Query: 135 ILSETFLKTNGIDFIPRFASRF------GMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  +       +  F          G    +    ++   +  F+  RD      ++
Sbjct: 204 AKLQDVVSVQAGSLLTVFGRALSRVIGGGFALFNVLTVLVVTPVVAFYLLRDWPKAVARV 263

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D      +    +  +R + +++ +   G  +  +  G+         G+   + LG+ T
Sbjct: 264 DLWLPRRYAGVVRAQAREINRILSAWLRGQALCCLMLGVFYAVGLSFVGLDLGLLLGLAT 323

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--DKTLRPFLVGGPIK 306
            I++ IP    +   A S  L +           + G      +  +  + P  +G  ++
Sbjct: 324 GILSFIPYVGTVLGGAGSFALAMAQFHDWNRVALVAGVFLAGQILENYVIYPRFLGDRVE 383

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           L  +   F L  G    G LG+ +   + A+I V+ +  + 
Sbjct: 384 LHAVWVIFALFAGGAAFGFLGVLLAVPMAAVIGVLSRFWLR 424


>gi|16080168|ref|NP_390994.1| integral inner membrane protein [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221311057|ref|ZP_03592904.1| hypothetical protein Bsubs1_16941 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315383|ref|ZP_03597188.1| hypothetical protein BsubsN3_16852 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320300|ref|ZP_03601594.1| hypothetical protein BsubsJ_16825 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324583|ref|ZP_03605877.1| hypothetical protein BsubsS_16971 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|8928520|sp|O32086|YUBA_BACSU RecName: Full=UPF0118 membrane protein yubA
 gi|2635600|emb|CAB15094.1| putative integral inner membrane protein [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 388

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 72/200 (36%)

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                F     +  +SI+ +   LF+  +DG  +   +              +   +   
Sbjct: 170 TGVGNFIGALTEIIISIVTVPFILFYLLKDGRKLPVYILKFVPTRLKEQTYTVLSEMNHR 229

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G  I++   G +L   Y + G+     L VI A  +++P   P      +I + 
Sbjct: 230 LSSYIRGQIIVSFCIGFLLFIGYLIIGLDYASLLAVIAACTSIVPYLGPTIAITPAIIIA 289

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           I  +      L +   I   I  K + P ++G  + +  +   F L+   +  G++G+ +
Sbjct: 290 IVTSPLMLLKLVIVWTIVQLIEGKLISPQIMGKNLHIHPITIIFLLLTAGKLFGVVGIIL 349

Query: 331 GPVLMALIAVIWKESIMAIK 350
                A+  VI        K
Sbjct: 350 AIPGYAVAKVITTHLFDWFK 369


>gi|321312655|ref|YP_004204942.1| putative integral inner membrane protein [Bacillus subtilis BSn5]
 gi|320018929|gb|ADV93915.1| putative integral inner membrane protein [Bacillus subtilis BSn5]
          Length = 388

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 72/200 (36%)

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                F     +  +SI+ +   LF+  +DG  +   +              +   +   
Sbjct: 170 TGVGNFIGALTEIIISIVTVPFILFYLLKDGRKLPVYILKFVPTRLKEQTYTVLSEMNHR 229

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G  I++   G +L   Y + G+     L VI A  +++P   P      +I + 
Sbjct: 230 LSSYIRGQIIVSFCIGFLLFIGYLIIGLDYASLLAVIAACTSIVPYLGPTIAITPAIIIA 289

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           I  +      L +   I   I  K + P ++G  + +  +   F L+   +  G++G+ +
Sbjct: 290 IVTSPLMLLKLVIVWTIVQLIEGKLISPQIMGKNLHIHPITIIFLLLTAGKLFGVVGIIL 349

Query: 331 GPVLMALIAVIWKESIMAIK 350
                A+  VI        K
Sbjct: 350 AIPGYAVAKVITTHLFDWFK 369


>gi|258626151|ref|ZP_05720999.1| permease PerM, putative [Vibrio mimicus VM603]
 gi|258581506|gb|EEW06407.1| permease PerM, putative [Vibrio mimicus VM603]
          Length = 396

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 59/353 (16%), Positives = 122/353 (34%), Gaps = 14/353 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P       I+    +++YF     AP+L A+++ +   WP+    + +     T   VI
Sbjct: 55  DPHAASLVAILLFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQ--LRRLRIPRTVAVVI 112

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
                  L I+ +  L      ++  L++ V           ++++ +P           
Sbjct: 113 VITVFTGLMILAVFGLVPTIWKQVGNLINDVPNMYSGTQ---QFITSLPE----RYPELA 165

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           HL   +S+   ++  +   G   +    +   +      + +I + + +FF  +D   + 
Sbjct: 166 HLEIVESVISNAKNKVLGMGETVVKGSLASL-VSLATLGVYLILVPLLVFFLLKDKQEML 224

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +          K+   + + I +   G  +  I  G V    + +  +   V L 
Sbjct: 225 RMASGVLPR-NRKLATKVWEEMNQQISNYIRGKVLEIIIVGTVSYITFAILDLRYSVLLA 283

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V   +  +IP  GA      V+I  L + G       L +   I   +    L P L   
Sbjct: 284 VAVGLSVLIPYVGAAAVTVPVAIVALFQWGLTPQFYTLLIAYGIIQALDGNVLVPILFSE 343

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            + L  +     ++      G  G+F    L  L+  +WK       E +  I
Sbjct: 344 AVNLHPVAIIIAVLVFGGLWGFWGVFFAIPLATLVKAVWKALPSLEDEPEASI 396


>gi|302876888|ref|YP_003845521.1| hypothetical protein Clocel_4095 [Clostridium cellulovorans 743B]
 gi|302579745|gb|ADL53757.1| protein of unknown function UPF0118 [Clostridium cellulovorans
           743B]
          Length = 387

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/341 (13%), Positives = 116/341 (34%), Gaps = 10/341 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA-----VIATVSV 70
           ++ ++      L  F      A I+        + F   +      L      + + +  
Sbjct: 35  VLGVLSYCYTLLLPFILGGCIAFILNIPMNYFSNKFSRVQGNKLGSLVRKGNKIFSLILS 94

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWASELWTKHLSH 129
             L +  ++ +    + ++ E   ++    ++  + V  W+ ++             +  
Sbjct: 95  FVLVLGVIILVLALVIPQIAETAKRLPTTFENASVIVKSWIENVDWLSNDIINKINVIEI 154

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             +           NG   +          FL+  ++    ++   +   D  ++S+Q  
Sbjct: 155 DWNSVFNEIKSSVFNGAGSMISSTIGVATSFLNGVVNFSLGLVFSIYLLLDKENLSKQCK 214

Query: 190 SLGEHLFPAYWK----KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            +     P        +I+ +  K   +   G  + A+  G +      +   P  + + 
Sbjct: 215 KILYAFLPKEKVVSILEIASLANKTFSNFLTGQCVEAVILGFLFFVTMSILHFPYAMVVS 274

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           V  A  A+IP         +  +L++  N   A    +   +   I    + P +VG  +
Sbjct: 275 VFIACTALIPVFGAFIGGGLGFFLIVMDNPTKALLFLVLFLVLQQIEGNLIYPRVVGNSV 334

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            LP +     +  G + MGL G+ I   L ++  V++++++
Sbjct: 335 GLPSMWVLVAITLGGKLMGLTGMLIFIPLCSVAYVLFRKAV 375


>gi|300812578|ref|ZP_07092995.1| putative membrane protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496451|gb|EFK31556.1| putative membrane protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 377

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 86/247 (34%), Gaps = 7/247 (2%)

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
              L+ +  +   S       +L+  G     +  +  +       +     F +I   +
Sbjct: 127 LESLYDQLKAQYSSFINEILAYLQKQGWSTSGLVSYMQKGVGRVTGFLSDFFFGVIFAIY 186

Query: 177 FYRDGFSISQQ----LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
           F  DG  I+      L +L         K       +       G  I A   GL++  A
Sbjct: 187 FLYDGQRIAAYWKRNLGTLLNKKVIKGIKLFLADADRAFSGYIRGQIIDAFIVGLLVSLA 246

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
             +A VP  + +G++T +  +IP   PI    + I          A  + +   + +  +
Sbjct: 247 MLIAKVPYGLLIGLVTGLGNLIPYFGPILGYGMVILACTLSQNMTALIVGMIILLLIQAI 306

Query: 293 D-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           D   L P L+   I +  L     ++ G    G +G+ I   + AL+   ++  I   ++
Sbjct: 307 DGNILNPKLLSSAIHIHPLYVIACVIAGGAMGGFVGMLIAVPIGALLKTEFERLIAYRQK 366

Query: 352 NKEKISS 358
             EK   
Sbjct: 367 QLEKSKE 373


>gi|260779371|ref|ZP_05888263.1| permease PerM [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605535|gb|EEX31830.1| permease PerM [Vibrio coralliilyticus ATCC BAA-450]
          Length = 358

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 52/349 (14%), Positives = 116/349 (33%), Gaps = 14/349 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +    I+    +++YF     AP+L A+++ +   WP+    +S+     T   ++
Sbjct: 15  DPHAVSLVAILLFGFITIYFFGNLIAPLLVAIVLAYLLEWPVSQ--LSRLGIPRTLSVIL 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +    L +V +  L      ++  L++ +             L  +   +        
Sbjct: 73  VILGFTSLMMVAVFGLVPTIWQQVGNLINDIPSMYTG-------LQKVIAELPQRYPELD 125

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +    +SL   ++  +   G   +    +    I     + +I + + +FF  +D   + 
Sbjct: 126 NFQIVESLVTNAKNQVIVMGETVVKGSLASLVSIAT-LAVYLILVPLLVFFLLKDKQEMI 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                +          K+   +   I +   G  +  +  G V    + +  +   V L 
Sbjct: 185 AMASGVLPR-NRKLATKVWHEMNDQISNYIRGKVMEILIVGGVSYVTFAILDLRYSVLLA 243

Query: 246 VITAIMAMIP-GGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V   +  +IP  GA      V+ + L   G       L +   I   +    L P L   
Sbjct: 244 VAVGLSVLIPYIGAAAVTVPVAMVGLFQWGLTPQFYWLLIAYGIIQALDGNVLVPVLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            + L  +     ++      G  G+F    L  L+  +W       ++ 
Sbjct: 304 AVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWNALPSNDEDE 352


>gi|150025670|ref|YP_001296496.1| putative transporting permease [Flavobacterium psychrophilum
           JIP02/86]
 gi|149772211|emb|CAL43687.1| Putative transporting permease [Flavobacterium psychrophilum
           JIP02/86]
          Length = 362

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/351 (12%), Positives = 125/351 (35%), Gaps = 18/351 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  + + ++L  LY ++     ++ +LI+   + P       K + S+T   V    
Sbjct: 12  KALLIIVAIAMLLFFLYQIQSVIIYLIVSLILTLITSPFVGFLKRKLKFSNTIAVVFTMF 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M  F+  ++      + + + L      + ++                  +++  +  
Sbjct: 72  LLMLTFVGLIMMFVPLILAQSENLSLLDTKSIENSATQL---------TNQFKIYLTNHH 122

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 +   +       +FIP   +        + + +  ++   FFF +D    +  +
Sbjct: 123 INAGNLLNFSSLTSKINFNFIPTILNSILGTISSFGMGLASVLFITFFFLKDKIIFTNGM 182

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +               + +++   F+G+ I      ++      + GV +   +  + 
Sbjct: 183 KIILPDNHEEKILNSFTKINEMLSRYFIGLLIQLSIVFILYLIVLLIFGVENAFVIAFLC 242

Query: 249 AIMAMIPGGAPISFTAVSIYLLI--------KGNIFNATCLFLWGAIELFIVDKTL-RPF 299
           A++ ++P   P+  + ++  L +        + +I   T   ++G   + ++D  + +P 
Sbjct: 243 ALLNIVPYVGPLIGSVLAAILTMISNLGGDFQNDILPTTLYVMFGFWVVQLIDNNISQPL 302

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +    +    L  F   +      G+ G+ I      ++ VI KE +   K
Sbjct: 303 IFSKSVNSHPLEIFLVTLISGFLFGITGMIIAIPFYTMLKVIAKEFLPENK 353


>gi|110800682|ref|YP_695022.1| hypothetical protein CPF_0568 [Clostridium perfringens ATCC 13124]
 gi|110675329|gb|ABG84316.1| putative membrane protein [Clostridium perfringens ATCC 13124]
          Length = 366

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 53/336 (15%), Positives = 116/336 (34%), Gaps = 4/336 (1%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           ++ +++ +     P L A II +   PI + F  K + S     VI  +  +    +   
Sbjct: 34  VMSAIHTILAVLLPFLLAFIIAYILNPIVNLFSKKFKLSRGISIVITYLIFVTSISLAAT 93

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ-SLKILSE 138
           +L       + EL+  +         V    ++I       E    +L +   +  I   
Sbjct: 94  YLLPKLYTSLIELIDNIPAFTN---YVQNLFTEIMASFKVPEGINSYLPYGDTNKLITFI 150

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             + T   +++   A       +++    +  I  L    +     S+    +       
Sbjct: 151 GSMVTVLSNWLLDAAISLTSSIINWIFGFLISIYVLVDKDKFLAHSSKVTRIVFGKNLGN 210

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              +  +I+ + I +      I ++  G++      +      + L V+  I  MIP   
Sbjct: 211 EILEFVKILNEKIGTYVGIKAIDSLIIGVLAFIGLTIMKSEYALLLSVVVGITNMIPYFG 270

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P     V  ++ +  +   A  + ++  I        L P L+G  + L       G+  
Sbjct: 271 PFIGMVVGFFINVFISPMKAVIVLIYLFILQQFDAWYLDPKLIGNRVGLSPFLVILGVTL 330

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G    G +G+ +G  +M++I +   + I   +   E
Sbjct: 331 GGAIYGPIGMILGSPVMSVIRIYTLKLIKKFEYRAE 366


>gi|312144391|ref|YP_003995837.1| protein of unknown function UPF0118 [Halanaerobium sp.
           'sapolanicus']
 gi|311905042|gb|ADQ15483.1| protein of unknown function UPF0118 [Halanaerobium sp.
           'sapolanicus']
          Length = 352

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 122/325 (37%), Gaps = 8/325 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L     P+L ++ + +   P+      K +          T++V+  F+     +    
Sbjct: 36  VLSFVLLPLLFSIFLYYLLRPLVIILEKKIKIR--------TIAVIISFLAAASIITLII 87

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            L    +  +          +   + +I   +       + L    +L+    ++  +  
Sbjct: 88  YLGGNIIYEQSRELGGSYELIYSSIVEIFENIRDFINIERGLIDDFNLRERLISYTDSII 147

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +               +  L I+ +   LF+  +D   I Q+   +         + +++
Sbjct: 148 MRLSTYNYMGIFSSLTNIGLIILLIPFVLFYLLKDDKEIYQKTIEMIPGSKRKQIEVLAQ 207

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K++        ++++    V+   + +  + S + L +I  I ++IP   P      
Sbjct: 208 DIDKLLSDFITSQLLVSLFTAFVMLIGFLIIRLASPLVLALIVLITSLIPIIGPAIGILP 267

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++++ +  +I  A  + +   I  ++    +RP + G  + +  L   F ++ GV   GL
Sbjct: 268 ALFIALTESIITALLVIIIFIIAQYLEGNLIRPLIQGKSMDIHPLVVLFVVLTGVYLFGL 327

Query: 326 LGLFIGPVLMALIAVIWKESIMAIK 350
           +G  I   L A++ +I++E I+  K
Sbjct: 328 IGALISVPLYAVLRLIYQERILKKK 352


>gi|307546172|ref|YP_003898651.1| hypothetical protein HELO_3582 [Halomonas elongata DSM 2581]
 gi|307218196|emb|CBV43466.1| conserved hypothetical protein [Halomonas elongata DSM 2581]
          Length = 371

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 52/331 (15%), Positives = 112/331 (33%), Gaps = 12/331 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
            AP L+AL+I F      +    ++            ++V+ +F+  L  L    ++ + 
Sbjct: 41  LAPFLTALVIAFLLQGAVNGLTRRRVPH--------LLAVLLVFLGFLGILLAMALILLP 92

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            + +++V   Q    +      +   + A           Q+   ++   +   G     
Sbjct: 93  LIWNQLVNLLQETPRMFASGQSLLDDLQARYPQLITPDQIQTWIGMAGREVTQLG-QRAL 151

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
             +       L   + ++ + I +FF  +D   +     SL          +I   +   
Sbjct: 152 SLSLSSLGNVLSLIIYLVLVPILVFFMLKDRDRLVGFAVSLLPQ-RRELMTRIWHEMDDQ 210

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
           I +   G  I  I  G V    +   G+P    L V+  +  +IP  GA ++   V+   
Sbjct: 211 IANFVRGKFIEIIIVGSVSFFTFMFFGLPYSALLAVLVGLSVLIPYIGAAVATLPVAAVA 270

Query: 270 -LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
               G       + +   +   +    L P L    + L  +     ++      G  G+
Sbjct: 271 GFHFGISDQFVYVLIAYGVIQALDGNVLVPVLFSEAVNLHPVSIILAVLFFGGIWGFWGI 330

Query: 329 FIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           F    L  L+  +       I++ +E++S+ 
Sbjct: 331 FFAIPLATLLKALVYAWPRGIQQRREEVSAE 361


>gi|270293100|ref|ZP_06199311.1| conserved hypothetical protein [Streptococcus sp. M143]
 gi|270279079|gb|EFA24925.1| conserved hypothetical protein [Streptococcus sp. M143]
          Length = 362

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 55/332 (16%), Positives = 112/332 (33%), Gaps = 7/332 (2%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L    + ++   +I F              +      +   ++++ +F+  +L +    +
Sbjct: 34  LFDVISTLIYGAVIAFVLNVPMKKIEQYLVKLKVKAELRRPIAMVLVFLALILIVIALLV 93

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
           L +  L   +         V   L  + G           LS   S      + +    I
Sbjct: 94  LVLPTLAQTISQLGTVLSTVLTQLEKLLGSSEFVT--KDMLSTIVSGIQGQSSSISQALI 151

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY----WKK 202
            F+    S  G       ++   +I+  F F      ++     L +   P         
Sbjct: 152 GFLSGLTSNIG-NIFSSLMNAFLIIVFTFLFLSSKEHLAAMTSRLLKVFLPEKVVIKLTY 210

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           I ++  +      +   I A+  G+++   Y + G+P  V  G+   +++ IP   P+  
Sbjct: 211 IGQVALETYDQFLMSQLIEAVIIGVMIAVGYSVFGIPYGVMTGIFAGVLSFIPYVGPMIA 270

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             V    +   +   A    L   +   I    + P +VG  I LP + T      G   
Sbjct: 271 CVVGAIFIFTVSPTQALLSLLLYQVIQLIEGNLIYPRVVGQSIGLPAIFTLAAASIGGNL 330

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            GLLG+     + A+I  + KE ++A +   +
Sbjct: 331 FGLLGMIFFTPIFAVIYRLVKEFVVAKENQLD 362


>gi|72162280|ref|YP_289937.1| hypothetical protein Tfu_1881 [Thermobifida fusca YX]
 gi|71916012|gb|AAZ55914.1| conserved hypothetical protein [Thermobifida fusca YX]
          Length = 435

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 132/355 (37%), Gaps = 21/355 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  +++ +IL    +++    PV+ A+ +     P       +          I+ +
Sbjct: 52  RLLIIGVVIALILWGAIYIRVVTIPVILAVFVTALLMPPTQWLRDR-GLGRGLSTTISVL 110

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +F   +  +    +     +V+ +   N+  + + +  +           W     
Sbjct: 111 GAVIIFGGVVTLIVLPAISGFDAIVASI---NESVVTLQQIAASFGMDDQLINEW----- 162

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                   ++ +++ N    I   A    +   +  + II +I+   +F   G  + + +
Sbjct: 163 -----IASAQQWIQRNSSQLISG-AWAGAVAVGEVLVGIILVIVLTIYFVHSGDELMRWV 216

Query: 189 DSLG----EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            SL             +    ++ + +R   L   I AIG G VL   +W   +   + L
Sbjct: 217 RSLFPSATRRALRDAGELTYDVIGRYVRGVALVGLIDAIGIGAVLLFVFW-DDLSLVMPL 275

Query: 245 GVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            ++T I A +P  GA ++     +  L+   ++ A  +         +    + P + G 
Sbjct: 276 VILTFIGAFLPVIGAFLAGLVSVLVALVVEGLWMAVVVLAGTIAVQQLESHIIAPRIYGR 335

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            ++LP       +  G    G+ G F+   ++A++AV+ +     ++ + ++  +
Sbjct: 336 SLELPSAVVLLSISVGSIIGGITGAFLATPVVAVLAVLLRNRPFTVEASAQEQET 390


>gi|257792294|ref|YP_003182900.1| hypothetical protein Elen_2556 [Eggerthella lenta DSM 2243]
 gi|317490215|ref|ZP_07948703.1| hypothetical protein HMPREF1023_02403 [Eggerthella sp. 1_3_56FAA]
 gi|257476191|gb|ACV56511.1| protein of unknown function UPF0118 [Eggerthella lenta DSM 2243]
 gi|316910709|gb|EFV32330.1| hypothetical protein HMPREF1023_02403 [Eggerthella sp. 1_3_56FAA]
          Length = 429

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/339 (12%), Positives = 114/339 (33%), Gaps = 14/339 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES--S 59
           R  ++    +   ++  +++     L      V+ +++I F      +            
Sbjct: 16  RSFLIVWTIVGGILLTGVLVYLFNILSVPIGIVIWSIVIVFCLRGPVNKLEKLGVPRVAG 75

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH----GIPVPRWLSDIPG 115
           T +A +    V+ L  + +    +    +   L+  +    Q     G  +    +D+  
Sbjct: 76  TTIAYVLMFVVLALVGLLMFSPAFGVGDQFTNLIESIPGYVQTIAGWGNDLYTRYADVLQ 135

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
                      L    ++   + TF + +    +       G   ++  +++ F ++  F
Sbjct: 136 NDTVQTWINNALD---AIVSWASTFARDSANGVVA-----IGTGLVNTFVALGFALVVAF 187

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           +   +   + ++   L         + +     +V+     G  +     G+     +  
Sbjct: 188 WILMELPQLGRECMRLVNPKRHEDLEMLHVTFTRVMGGYIKGTLLQCAIIGVGCVVLFGA 247

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
            G+P++ ALG I  ++ +IP   P    A++  + +  + + A            IV   
Sbjct: 248 IGIPNYAALGGIAGLLNIIPIVGPWLGGALAAIVGVFVSPWIAVIALGGTIAIQQIVYTF 307

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
           + P ++   + +    T   L+ G    G +  F G ++
Sbjct: 308 ISPKIMANSVDVHPALTLIALMAGSAIGGAMSGFTGSLV 346


>gi|182625054|ref|ZP_02952831.1| putative membrane protein [Clostridium perfringens D str. JGS1721]
 gi|177909674|gb|EDT72100.1| putative membrane protein [Clostridium perfringens D str. JGS1721]
          Length = 377

 Score = 77.2 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/333 (13%), Positives = 112/333 (33%), Gaps = 8/333 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE-------SSTFLAVIATVSVMC 72
           I+  LY   G   P +  + I F                        +F   +  +  + 
Sbjct: 31  IMNFLYKFLGILKPFIWGIAIAFILNIPVKLIEKNLGNGKFFKGMKRSFSITLTFLFFIL 90

Query: 73  LFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              + +LF+    +  +  L++ +    +Q    +     +        +     L +  
Sbjct: 91  AITLFILFVIPQLLSSISTLMNSIPEYLSQFEKFLEVNAINNSQSQVMMQNIINELLNMW 150

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              +   + +    + ++  F        +++ L++I  I  L         +   + + 
Sbjct: 151 KEILKVTSQIVGTSLCYLLDFTLGITYGVINFFLALILAIYMLASKEILISQLKLIIYAF 210

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                     ++  +  ++     LG    A+  G++      +  +P  + + V+  + 
Sbjct: 211 VSKNKADRIIELGNMCNEMFSKFILGQCTEALVIGVLCFIGMIILKMPYALLISVVIGVT 270

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           A+IP       T  S ++++  +   A    ++  +   +    + P +VG  I L  L 
Sbjct: 271 ALIPVFGAFLGTIPSAFIILIIDPIKALWFIIFIIVLQQLEGNLIYPRVVGSSIGLSALW 330

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             F ++ G    G++G+ IG  +  ++  I K 
Sbjct: 331 VMFAMIVGGSLFGIIGMLIGIPIFGVVFKILKR 363


>gi|159026346|emb|CAO86435.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 347

 Score = 77.2 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 60/344 (17%), Positives = 124/344 (36%), Gaps = 38/344 (11%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLS-----ALIIGFTSWPIYSSFISKKEESS 59
            LN   ++R++++F    SL  L  +F  +++     A++    ++P+            
Sbjct: 10  TLNNSILVRYLLLFGCGWSLIILINYFYGIIAIFTGSAILAALLNYPV-VWLSRYLP--R 66

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA--NQHGIPVPRWLSDIPGGM 117
                I T+    L    +  +    + + K L+  +  A   Q  +P   +L  +    
Sbjct: 67  GLAIAITTIVAFILLFRLVTGIGLEAVSQGKGLLFNLTDALGQQDFLPFKDFLDRLDLNK 126

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
               L T   +                                     + +F  +   + 
Sbjct: 127 MVGTLQTGLAT------------------------GLSIVQGVFSSVFTGVFGAVISVYM 162

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             DG  + +    L   L PAY ++ ++   +       G  ++ +   +    ++ L G
Sbjct: 163 LIDGDKLWRGFLQL---LPPAYRERFAKSFRQSFLGFIRGQLLLMLFLSVTSFLSFSLLG 219

Query: 238 VPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           +   + L  I  ++  IPG GA +    V+I       +  A   F+   + + I D  +
Sbjct: 220 IQYGLILAGILGVIDAIPGIGATLGILLVTILTFTSQGLTIAVKAFIVCVVLVQIQDNII 279

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           RP ++G  ++L  +  F  L  G R  GLLG+F+   +  +IA+
Sbjct: 280 RPKVMGNALELNPVILFLSLFIGERIAGLLGVFLSIPIAGMIAI 323


>gi|85715997|ref|ZP_01046974.1| hypothetical protein NB311A_14310 [Nitrobacter sp. Nb-311A]
 gi|85697195|gb|EAQ35076.1| hypothetical protein NB311A_14310 [Nitrobacter sp. Nb-311A]
          Length = 683

 Score = 77.2 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 118/361 (32%), Gaps = 30/361 (8%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + +   ++  +++  LY  +  F P++ A+++ F   P+           +  + V+  
Sbjct: 20  DRALTAVVVAALVICGLYVGREIFVPIVLAVLLSFVLAPLVDILERWHFPRAASVPVVVL 79

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++ + +F      L    + E++ L   + L  Q      + L  +              
Sbjct: 80  LAFIAIF-----ALGGLIVREVRGLAESLPLYQQTMQQKIQSLRALTMTGPLDRAAELLQ 134

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASR------FGMIFLDYCLSIIFMIIALFF----- 176
           +  + +         +       + A                 L  I  +I+        
Sbjct: 135 NLDKEISGPQNQPSPSAAGSPSSKTADHVEPIPVLVRSPPQSALENISALISPLLHPLAI 194

Query: 177 -----------FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
                       ++     ++ +   G +   +    I     ++ R   + + + A G 
Sbjct: 195 VGIVIVFVIFILFQREDLRNRFIKLAGSNDLQSATAAIDDAAGRLSRLFLMQVLLNA-GF 253

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           G+++ +   L GVPS +  G++ AIM  +P   P       + L I  +   +  L+   
Sbjct: 254 GVIVAAGLLLIGVPSAILWGILAAIMRFVPYVGPFIAAFFPLTLAIAVDPGWSMLLWSGA 313

Query: 286 AIELF--IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            I L   +V +   P LVG    L  +             G +GL +   L   + V+ +
Sbjct: 314 LILLTELVVGQVFDPLLVGHSSGLSPVAVVVSATFWTALWGPIGLVLATPLTICLVVLGR 373

Query: 344 E 344
            
Sbjct: 374 H 374


>gi|117920098|ref|YP_869290.1| hypothetical protein Shewana3_1651 [Shewanella sp. ANA-3]
 gi|117612430|gb|ABK47884.1| protein of unknown function UPF0118 [Shewanella sp. ANA-3]
          Length = 366

 Score = 77.2 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 101/303 (33%), Gaps = 12/303 (3%)

Query: 45  WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
           WP+      K   + T  A +  V  + + ++    L      +   L++ +      G+
Sbjct: 54  WPVAQML--KLGINRTTGASLVLVLFLGIVVLLTFGLIPSVWRQGVSLMTDLPSMIDKGL 111

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
              + L+       +SE           +    +  L T  +  I +    +    L   
Sbjct: 112 QTLQGLATQYPQFVSSEQLNL-------MVAELKKLLDTQHLLDIAKQLIGYSASLLVLM 164

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
           +  I + + +FFF +D   +                +K+   + + I +   G  I  + 
Sbjct: 165 VYAILVPLLVFFFLKDKDQLISGSKRFFPT-NRQLARKVWFEMHQQIFNYIRGKVIEIVI 223

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFL 283
            G+     +   G+     LGV+T +  +IP  GA +    + +    +    +     +
Sbjct: 224 VGVASYIFFAFMGLRYSALLGVLTGLSVLIPYVGATLVTLPIMLVAFFQWGFSSEFGYLM 283

Query: 284 WGAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            G   +  +D   L P L    + L  +     ++      G+ G+F    L +L+  + 
Sbjct: 284 LGYGIIQALDGNVLVPILFSDAVDLHPVIIIAAVLVFGGLWGVWGVFFAIPLASLVKAVI 343

Query: 343 KES 345
              
Sbjct: 344 NAW 346


>gi|168186309|ref|ZP_02620944.1| permease [Clostridium botulinum C str. Eklund]
 gi|169295736|gb|EDS77869.1| permease [Clostridium botulinum C str. Eklund]
          Length = 368

 Score = 77.2 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/331 (12%), Positives = 105/331 (31%), Gaps = 9/331 (2%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P + A II +   PI      +   +         + VM L  +  + +         
Sbjct: 43  LMPFILAFIIAYILNPIMKFIEKRIRLNRGASISCTYILVMSLITIFSIIIIPKVFNSGI 102

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           ++++ +    Q         + IP    +S      L +     I   + + + G+  + 
Sbjct: 103 DMINNIPDFAQKMYSWTS--NHIPSKFMSSG---SILRNNSGKWIEKLSVMSSQGLSVVL 157

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     +++   +I  I  L+   +     ++ +  + +      +    + V  +
Sbjct: 158 STIVSTTTSLINFIFGLIISIYMLYDKEKFQEISTKLIYIVLKKEKGNKFISFIKTVHTM 217

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI--SFTAVSIY 268
           + +      I +   G++      +   P  + L +I  +  MIP   P         I 
Sbjct: 218 VGTYIGIKAIDSFIIGVICFIGLMIFKTPYVLILSIIVMVTNMIPYFGPFMGMIPPFVIN 277

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           +    +   A  + ++  +        L P LV   + +       G+       G++G+
Sbjct: 278 IFY--DPKKALGILIFLILLQQFDAWILEPKLVSNSVGVSPFLVILGITIFGSLFGVIGM 335

Query: 329 FIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            +   +MA++ +   +   +     E   + 
Sbjct: 336 LLASPIMAVLNIYLGKWFRSKVNQYESSQNQ 366


>gi|116671651|ref|YP_832584.1| hypothetical protein Arth_3105 [Arthrobacter sp. FB24]
 gi|116611760|gb|ABK04484.1| protein of unknown function UPF0118 [Arthrobacter sp. FB24]
          Length = 389

 Score = 77.2 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 87/231 (37%), Gaps = 1/231 (0%)

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             + ++      +       +   A     +  ++      M++ LFFF +DG  I    
Sbjct: 135 DGEQIEQARAAIVDFAASSQVRSGAITGLSVITEFLAGASLMVVILFFFLKDGTGIWNFF 194

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                    A  ++      +V+     G  I+A+ + L +G+A  +  VP  + L +I 
Sbjct: 195 LRPYTGAREAKLRRSGARTIQVLGDYVRGTAIVALVDTLAIGTALLILNVPLAIPLAIIV 254

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I A +P  GA ++    ++  L+      A  + +       +    L+P ++G  ++L
Sbjct: 255 FIGAFVPIVGATVAGILAALVALVANGPVVALVVVIVVIAVNQLEGNLLQPVVMGKSLQL 314

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             L     L  G    G++G  +   L A++  I +      K+     S+
Sbjct: 315 HALVILLALTAGTILAGIIGAVLSVPLAAVVWAIIQVWTTDEKDQAPAGSA 365


>gi|170783027|ref|YP_001711361.1| putative integral membrane protein [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169157597|emb|CAQ02795.1| putative integral membrane protein [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 381

 Score = 77.2 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 53/334 (15%), Positives = 115/334 (34%), Gaps = 17/334 (5%)

Query: 14  WMIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +I   +  +++ L   K    P L  L++     P+ ++   ++     +LA+ +T+  
Sbjct: 45  LVIGIAVAAAVWLLVAVKEVVIPFLIGLLVCALLQPLVAALRRRRW--PAWLAITSTLLG 102

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             + I  L+ L    +      + +   A +    V   L+  P  +  S+      S  
Sbjct: 103 TAVVISGLVLLLVAQIRTGIPTLQR--EAMERFESVRDLLAQPPFNVVPSDYDALLASAG 160

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           ++L+   E  L               G+         +     +     DG  I + + S
Sbjct: 161 KALENSREALL---------TGVLDAGLGVGHLVTGALLAFFTIVIVLIDGRGIWRFVVS 211

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +             R     + +       +A G  + +G A WL G+P  + + V+  +
Sbjct: 212 VFPRRARPAIDGAGRAGWGTLSAFTRVQIFVAAGNAVGIGIAAWLLGLPLAIPIAVLVFL 271

Query: 251 MAMIPGGAPISFTAVSI-YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            + IP    I   A ++   L+      A  + +       +    L+P ++GG + +  
Sbjct: 272 ASFIPVVGAIVSGAFAVVIALVFVGPLQAAIMLVAVIGVHLLESHVLQPLVMGGAVHVHP 331

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L     +  G    G+ G       +A + V+ +
Sbjct: 332 LAVVLSVAAGSYVGGVAGALFAVPAVATLNVMVR 365


>gi|319762825|ref|YP_004126762.1| hypothetical protein Alide_2134 [Alicycliphilus denitrificans BC]
 gi|330824904|ref|YP_004388207.1| putative phytochrome sensor protein [Alicycliphilus denitrificans
           K601]
 gi|317117386|gb|ADU99874.1| protein of unknown function UPF0118 [Alicycliphilus denitrificans
           BC]
 gi|329310276|gb|AEB84691.1| putative phytochrome sensor protein [Alicycliphilus denitrificans
           K601]
          Length = 787

 Score = 77.2 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 52/339 (15%), Positives = 113/339 (33%), Gaps = 19/339 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I  +I+  LYF +    P++ A ++ F   P+       +      +  +   +++  
Sbjct: 31  LVIAALIIAGLYFGRTILVPLVLAFLLSFVLAPLVDRLRRLRVPDVAAVLAVVLATLLV- 89

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQH---GIPVPRWLSDIPGGMWASELWTKHLSHP 130
               L         E + L +++          +   R     PG    ++  T  +   
Sbjct: 90  ----LGAGATLVANEARALSAELPSYQSTIRGKLRNLRKQMRAPGMFDGAK-RTLDIVQR 144

Query: 131 QSLKILSETFLKTNGIDFI------PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +       T      +  +       + A                +++ + F   D   +
Sbjct: 145 EVDAATPATPAAVQKVQVLPPPVSPAQQAMAALGSVSGPLADAALVLVFVVFILLDRVDL 204

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             +L  L           +     ++ R   + + + A   G+ L +  W  GVP  +  
Sbjct: 205 RDRLLRLWGRDLHRATDAMDEAGGRITRYLTMQLLVNATY-GIPLAAGLWFIGVPGALLW 263

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLVG 302
           GV+ A+M  +P   P+  +A  + L    +   +  L+  G I +   I +  + P+L G
Sbjct: 264 GVLAAVMRFVPYVGPLISSAFPVALAFAVDPGWSLVLWTIGLIAVLELISNNVVEPWLYG 323

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAV 340
               L  +             G +GL +  P+ + L+ V
Sbjct: 324 ASTGLSVMSLIVSATFWTALWGPVGLVMSTPLTVCLLVV 362


>gi|239982689|ref|ZP_04705213.1| hypothetical protein SalbJ_24884 [Streptomyces albus J1074]
          Length = 429

 Score = 77.2 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 50/356 (14%), Positives = 111/356 (31%), Gaps = 22/356 (6%)

Query: 8   PQGIMRWMIMFIILVSLYFL--KGF------FAPVLSALIIGFTSWPIYSSFISKKEESS 59
           P+ + R M+M + LV+ + L    F         +L A  +     P  S   ++     
Sbjct: 25  PRWLPRAMVMALALVAAFQLGTWAFHQLTSLLINILIAFFLALAVEPAVSWMAAR-GMRR 83

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
                   + ++      +  L      ++ ++V       ++   V  W++       +
Sbjct: 84  GLATAAVFLGLLVASAGFVTLLGSMLAGQIVDMVEDFP---KYLDSVISWINQTFHTDLS 140

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                  L H   L+   +                      L     ++ +++  F+F  
Sbjct: 141 RLEVQDSLVHSDWLRRYVQNS---------ATGVLDISAQLLGGLFQLLTLVLFAFYFAA 191

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  + + L S+      A   +   I             ++A+  G          GVP
Sbjct: 192 DGPRLRRALCSVLPPARQAEVLRAWEIAVDKTGGYLYSRGLMALISGAAHYVLLQWLGVP 251

Query: 240 SHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              AL V   +++  IP        A+ + +    + + A  +  +  +     +  L+P
Sbjct: 252 YAPALAVWVGLVSQFIPTIGTYLAGALPMLIAFTVDPWYALWVLGFVVVYQQFENYMLQP 311

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            L    + +     F  ++ G   +G +G  I    +A +       +     + E
Sbjct: 312 KLTAKTVDIHPAVAFGSVIAGTALLGAVGALIAIPAVATLQAFLGAYVRRYDVHDE 367


>gi|83590483|ref|YP_430492.1| hypothetical protein Moth_1647 [Moorella thermoacetica ATCC 39073]
 gi|83573397|gb|ABC19949.1| Protein of unknown function UPF0118 [Moorella thermoacetica ATCC
           39073]
          Length = 345

 Score = 77.2 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 53/273 (19%), Positives = 100/273 (36%), Gaps = 2/273 (0%)

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           + I+ L  L     +    L   V   N+    +P +  +I G +         ++ P  
Sbjct: 64  ILILYLFILALSLPVFFFVLPQLVRELNEFIAQLPSFTVEIEGLVQGFYQRYHQVALPAG 123

Query: 133 LKILSETFLK--TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           L+ L +  +   ++ +    R A +  +  L    S +   +  ++  RD   I +    
Sbjct: 124 LRRLVDDSITNVSSALQEGARHAVQALIDLLAGLASFLLAPVLAYYLLRDSEQIGRAASH 183

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L           +   + +V+ S   G  ++++  G + G    L G    V LGV+  +
Sbjct: 184 LLPIQVKEDILGLWAEIDQVLTSFIRGHLLVSLIVGCLTGVGLALTGSEYAVILGVVVGL 243

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             +IP   P+  T   I L +  +   A        +   I    L P ++G  + L  L
Sbjct: 244 ADLIPYFGPLIGTVPVIALSLLVSKKAAIMALAVMLVVQQIEGSFLAPRILGTSVGLHPL 303

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              F L+ G    G  GL +   L A+  ++ K
Sbjct: 304 IIIFALLAGGELWGAAGLILAVPLTAIGYILVK 336


>gi|157803500|ref|YP_001492049.1| hypothetical protein A1E_01595 [Rickettsia canadensis str. McKiel]
 gi|157784763|gb|ABV73264.1| hypothetical protein A1E_01595 [Rickettsia canadensis str. McKiel]
          Length = 351

 Score = 77.2 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 54/341 (15%), Positives = 126/341 (36%), Gaps = 11/341 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           ++   I+  + + I +     +     P   A II +   P  +   SK + S+ F + I
Sbjct: 1   MSKTAILWLVFLGIFISGFMLISDAVKPFFIAFIISYLLQPTINFIASKFKISNKFASSI 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + +F + L  L          +  ++     +      +           ++++ 
Sbjct: 61  IYLIFLNIFFLSLTILVPI-------IYGQIFTFIHNIPKYKNYFQGEILPPIMVKIYSI 113

Query: 126 HLSHPQSLKILSETFLKT--NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                  +K     F+ +    +  I     R+ +I ++  + ++ + I LF+F RD  +
Sbjct: 114 EPDIAYKIKDSLSNFINSIFTILSSIANNLWRYTIITINIFVLLLLIPIILFYFLRDWNN 173

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           I + + SL          +I   +  ++ +   G   I +        A+ + G+   + 
Sbjct: 174 IIENMKSLLPIKSRNKILEIISEINDLLSAYIRGQLNICLLLSTYYSIAFTVIGIDLALL 233

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLV 301
           LG++T  + +IP  G  I+F    I   +  ++       +   +   I +   L P ++
Sbjct: 234 LGILTGFLVIIPFIGTFIAFLLTLIIGYVTFSMTAKLLYIMMIYLVGNICESYVLTPKII 293

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           G  I L  L   F +       G++G+F    +  +  ++ 
Sbjct: 294 GDKIGLHPLWIIFSIFACGSLFGIIGIFFAIPIAGITKILL 334


>gi|237736730|ref|ZP_04567211.1| permease [Fusobacterium mortiferum ATCC 9817]
 gi|229420592|gb|EEO35639.1| permease [Fusobacterium mortiferum ATCC 9817]
          Length = 362

 Score = 77.2 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 48/330 (14%), Positives = 114/330 (34%), Gaps = 10/330 (3%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
           G+  PV+ A  I     PI +    K +       ++    V  L  + +  +    +  
Sbjct: 38  GYLVPVIYAFFITIFLEPIVTIIEKKLKIRRILAVLLTIFLVFVLVGIFIGIIAPQVIES 97

Query: 89  MKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           +K+L  K+     +  I     +  +           +  +   +    +  +L+  GI 
Sbjct: 98  IKDLYGKLPAMQGRLEIYAGELIEYLKRKGLLLMGDDEIKASITNFIKENMKYLQDFGIS 157

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            +      +G+    + +         F    D     + ++++   +F     K   + 
Sbjct: 158 VLWNIV-WWGIALTKFFIGFFLA----FLILIDKEYFVRFINNIFSIIFEREKAKSIMVF 212

Query: 208 PKVIRSTFL----GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
               R   L    G  I++   G++     +L+G P  +  G++  +  MIP    I   
Sbjct: 213 LGESREVLLKFVWGRIIVSTAVGIITFLVMFLSGTPYALLSGIMIGVGNMIPYIGSIIAG 272

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
           A+++ L+     F    L L   I   +    + P +V   + +        ++ G    
Sbjct: 273 AIAVLLVGLAEPFKLIFLGLAILIAQTVDGWVIGPKIVSETVGMGTFWVVVAILIGGSLF 332

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G +G+F G     ++ +++ + +    ++ 
Sbjct: 333 GPVGMFFGVPAFGILKLVYIKLLNKRGDSN 362


>gi|94266678|ref|ZP_01290353.1| Protein of unknown function UPF0118 [delta proteobacterium MLMS-1]
 gi|93452666|gb|EAT03223.1| Protein of unknown function UPF0118 [delta proteobacterium MLMS-1]
          Length = 362

 Score = 77.2 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 113/355 (31%), Gaps = 12/355 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           +PQ ++  +++    + L F     AP+L+A+II +      +    +            
Sbjct: 15  DPQAVILTLLLLTGALVLVFFGRMLAPLLTAIIIAYLLEGPIAWMEERLGVRRLVGVSCV 74

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
                 L +V  L +F     ++ +L+ ++      G  V          +   E +   
Sbjct: 75  LALFFLLVLVSALTVFPVLWTQLADLLKEIPHYLARGQQVL---------LNLPERYPVI 125

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                   + +           +   +    +  +   + ++ +   +FF  +D   I  
Sbjct: 126 TEEQVRELVGTIRNQVGALGQHVLAISLASVVNIITLLVYLVLVPFLVFFLLKDKDLIMN 185

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +         A  + + R +   + +   G     +  G +   ++ +  V   V L  
Sbjct: 186 WISLRLPRERGA-AQDLWRDLDAQMGNYVRGKFWEILIVGGITFISFTILRVDYAVLLAT 244

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATC-LFLWGAIELFIVDKTLRPFLVGGP 304
           +T +  ++P  GA +    V +    +  + +    L +   I   +    L P L    
Sbjct: 245 LTGLSVLVPYVGAVVVTIPVLLVGYFQWGVGSELAWLLIAYGIIQTLDGNVLNPLLFAKA 304

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           + L  +     ++      G  G+F    L  L+  +           +E+  + 
Sbjct: 305 VNLHPVAIIGAILIFGGLWGFWGIFFAIPLATLVNALIITWPRNPDPEEEEAQAQ 359


>gi|20807695|ref|NP_622866.1| permease [Thermoanaerobacter tengcongensis MB4]
 gi|20516244|gb|AAM24470.1| predicted permease [Thermoanaerobacter tengcongensis MB4]
          Length = 339

 Score = 77.2 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 54/348 (15%), Positives = 124/348 (35%), Gaps = 15/348 (4%)

Query: 6   LNPQGIMRWMIMFIILVSLYF-----LKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +  +  + W ++ + +  ++      +K   +P   ++++ +   P    F SK      
Sbjct: 1   MKNKVYIIWFLIVLGIFYIFIKNWVSIKSILSPFFVSILMAYLLNPFVRYFTSK------ 54

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
                 T S++ +F +    +  +       L+ ++    +      R L+ +      +
Sbjct: 55  --GFTLTFSILTVFFIVAAAILIFSYYVFPILIGELASFVKVAPKYLRELNSVLNHFKFN 112

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L     +   +++                 F S  G   L   + I+ + I  F+F +D
Sbjct: 113 YLSNLPPNIESAVEKNLNVLTAGVASSIDTFFKSAVG--MLKGFVDIVIIPILTFYFLKD 170

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                 Q++ L    +      +   V +++         ++I  G   G    L  V  
Sbjct: 171 KDIFLTQVECLIPLKYREKIFSLLFKVDRILSKYLRAQAYLSIFVGAFTGLGLALVKVRY 230

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              LGVI  I+ +IP   PI     ++ + +  +IF     F    +   + +  + P +
Sbjct: 231 AFLLGVIAGILNIIPYIGPILSILPAVAIGLMDSIFKGLWAFAICLLIQQVENVFVTPKV 290

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           +G  + L  +   F L+ G    G+ GL     + A++  ++ E  + 
Sbjct: 291 MGDSVGLHPVTVIFVLILGEELFGVWGLLFSVPVAAILKEVFTEIFLD 338


>gi|225028666|ref|ZP_03717858.1| hypothetical protein EUBHAL_02945 [Eubacterium hallii DSM 3353]
 gi|224953976|gb|EEG35185.1| hypothetical protein EUBHAL_02945 [Eubacterium hallii DSM 3353]
          Length = 399

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 58/363 (15%), Positives = 125/363 (34%), Gaps = 17/363 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKE--------ES 58
           GI+   ++F + V +  LKG      P L  ++  +   P+ +    K          ++
Sbjct: 23  GILCAFVLFKMPVIISVLKGITEILKPFLYGVVFAYLLAPLCNKIEEKLFQIFPKAKTKA 82

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGM 117
             F+  IA V  +C+ I  +  +    + ++ + V K++    Q  I V  W+  +    
Sbjct: 83  RRFICFIAIVISLCVAIAVIWLIIMMIIPQVWDSVMKIIQMVPQKLIVVNNWIEHMLENQ 142

Query: 118 W-ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
                 + +  S  +S             +  I    S      L    +I   ++   +
Sbjct: 143 PELQAYFEEFSSQAESNIDSLLNVDTIQKVQSIINSLSVQLFGVLGVVKNIFLGLLISAY 202

Query: 177 FY----RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
                   G      L  +    +    ++  R   K+     +G  I +   GL+  + 
Sbjct: 203 LLGSRKLFGAQAGLILHGVFSDKWAKIIEEEIRYTDKMFNGFLVGKIIDSAIIGLLCFAG 262

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
             + G  +   + VI  I  +IP   P         LL+  N  +     ++  +   + 
Sbjct: 263 TSIMGFEAPAFISVIIGITNIIPFFGPFIGAIPCGLLLLLENPMHCLYFIIFIFVLQQLD 322

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              + P ++G    +      F ++      G++G+ IG  L A+I  I ++ +      
Sbjct: 323 GNVIGPKILGNTTGVSSFWVLFAILLFGGMWGVVGMVIGVPLFAVIYDIIRKLVYRGLRK 382

Query: 353 KEK 355
            ++
Sbjct: 383 HKR 385


>gi|295399259|ref|ZP_06809241.1| sporulation integral membrane protein YtvI [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978725|gb|EFG54321.1| sporulation integral membrane protein YtvI [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 341

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 43/326 (13%), Positives = 104/326 (31%), Gaps = 4/326 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
            FL  +  P++ AL       P      +                 + +      FL   
Sbjct: 15  LFLLPYSLPLVFALATALLLEPAVQHLQTHYRLKRVHAVTAVFSLFLIIVGFAFYFLIVI 74

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + ++     K+         V           ++S +  + +S  ++     +  L   
Sbjct: 75  LVQQIMTFSQKLPHFLSEATAVFNKFIQT-WESYSSSIPKEIISSLENSVETIQRLLLEF 133

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
             +        F      + +  +  ++ALF    D   + +++              I 
Sbjct: 134 ATNLTQSIV-HFITSIPGFLIHFLVYLVALFLISLDLPKLKKRIKKYLSERTHQRLAMIV 192

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
             + K          ++++    +      L  V   V + ++  ++ ++P  G      
Sbjct: 193 AQLSKAGIGFIKAQFLLSLITFFLALVGLLLLKVDYAVMMALLIVVVDILPILGTGSVLV 252

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
            + I  +  GN      L +   + + +V + + P +    + +  L     +  G + +
Sbjct: 253 PLGIISIANGNSGLGAGLIVL-FLIITVVRRIIEPKVFSTNLGISPLAALVSVYLGFQLL 311

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAI 349
           G +GLFIGP L+ L+  + K  ++  
Sbjct: 312 GFIGLFIGPALVILLEAMIKAGVIKF 337


>gi|312110140|ref|YP_003988456.1| sporulation integral membrane protein YtvI [Geobacillus sp.
           Y4.1MC1]
 gi|311215241|gb|ADP73845.1| sporulation integral membrane protein YtvI [Geobacillus sp.
           Y4.1MC1]
          Length = 341

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 43/326 (13%), Positives = 105/326 (32%), Gaps = 4/326 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
            FL  +  P++ AL       P      +                 + +      FL   
Sbjct: 15  LFLLPYSLPLVFALATALLLEPAVQHLQTHYRLKRVHAVTAVFSLFLIIVGFAFYFLIVI 74

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + ++     K+         V           ++S +  + +S  ++     +  L   
Sbjct: 75  LVQQIMTFSQKLPHFLSEATAVFNKFIQT-WESYSSSIPKEIISSLENSVETIQRLLLEF 133

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
             +        F      + +  +  ++ALF    D   + +++              I 
Sbjct: 134 ATNLTQSIV-HFITSIPGFLIHFLVYLVALFLISLDLPKLKKRIKKYLSERTHQRLAMIV 192

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
             + K          ++++    +  +   L  V   V + ++  ++ ++P  G      
Sbjct: 193 AQLSKAGIGFIKAQFLLSLITFFLALAGLLLLKVDYAVMMALLIVVVDILPILGTGSVLV 252

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
            + I  +  GN      L +   + + +V + + P +    + +  L     +  G + +
Sbjct: 253 PLGIISIANGNSGLGAGLIVL-FLIITVVRRIIEPKVFSTNLGISPLAALVSVYLGFQLL 311

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAI 349
           G +GLFIGP L+ L+  + K  ++  
Sbjct: 312 GFIGLFIGPALVILLEAMIKAGVIKF 337


>gi|167461645|ref|ZP_02326734.1| hypothetical Membrane Spanning Protein [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 371

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 53/322 (16%), Positives = 119/322 (36%), Gaps = 13/322 (4%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
           AP+  + +I     P ++ F+++K         I+T S + L +  +  L  +   ++  
Sbjct: 37  APLFWSFVIFLMIEP-FARFLNRKGLRKGLATTISTFSFIILILAFVTVLGLFLTNQVAS 95

Query: 92  LVSKVVLANQ--------HGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
           L+ K+                 + + + ++P      + + +  ++         T    
Sbjct: 96  LIEKIPGYANIIQHQIAGTTTYIQKKMQNLPPDTL--DKFQEFANNLTETATKFTTAFLK 153

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             +DF       F   F    ++ +  II  FF   +  S  +             +  +
Sbjct: 154 GILDFFKGGLLSFFTSFSGIMVNFVVGIILAFFLSLEIESWKKGARRKISPSLLNTFTFL 213

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISF 262
              V K +        I+     +++  +  +  V + ++L ++  ++ ++P  G    F
Sbjct: 214 KENVGKGVSGYIKSQLILVSITFVIVLVSLIILRVENALSLSIMAGVIDVLPLLGISAFF 273

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
               IYL I  N   A  L +   I L +V + + P + G  + +     F  ++  +  
Sbjct: 274 IPWIIYLFIINNYPLAIALSIVLGITL-LVRQIMEPKITGQALGVSPFTMFAFMIVSLSV 332

Query: 323 MGLLGLFIGPVLMALIAVIWKE 344
            G+ G  I PVL+  +  ++KE
Sbjct: 333 FGVFGFIISPVLLITLKALYKE 354


>gi|330469819|ref|YP_004407562.1| hypothetical protein VAB18032_29456 [Verrucosispora maris
           AB-18-032]
 gi|328812790|gb|AEB46962.1| hypothetical protein VAB18032_29456 [Verrucosispora maris
           AB-18-032]
          Length = 425

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 45/327 (13%), Positives = 112/327 (34%), Gaps = 18/327 (5%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
            G    V+ AL +     P      +        +A +            L  L      
Sbjct: 116 AGILVLVVIALFLAVGLHPAVVRLCAWGLPRGLAVAAVT-----------LTVLALLAAG 164

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            +  +   V  + Q    +P +L  +      ++L  +     ++ +  +   +      
Sbjct: 165 VLALVPPIVTQSGQFLDQLPSYLDTLRRNEAVNDLVVRFDLMRRAQEAANADVVGRALGG 224

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            +      FG +F    + ++ +   ++F       + +   +L         + I   +
Sbjct: 225 VLGGAQLVFGTVFRVLTVLVLTIYFLVYF-----DRMRELGYALVPRSRRERVQLIGDEI 279

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVS 266
              + +  +G   IA+  G+       + G+P   AL V+ A+  +IP  GA +    VS
Sbjct: 280 LTKVGAYMVGALSIAVLAGVTTFVFALIVGLPYPFALAVVVAVTDLIPQIGATLGAVIVS 339

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           +      +        ++  +   I +  + P ++   + +  +      + GV  +G++
Sbjct: 340 LVGFAT-DPSVGIACVVFFVVYQQIENYLIYPKIMRRSVHVNEVAALVAALLGVSLLGVI 398

Query: 327 GLFIGPVLMALIAVIWKESIMAIKENK 353
           G  I    +A   +I +E ++  ++ +
Sbjct: 399 GALIAIPTVAATQLILREVVLPRQDAR 425


>gi|326804323|ref|YP_004322141.1| hypothetical protein HMPREF9243_2032 [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651024|gb|AEA01207.1| putative membrane protein [Aerococcus urinae ACS-120-V-Col10a]
          Length = 404

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 99/303 (32%), Gaps = 1/303 (0%)

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI-PGG 116
                 V+A ++++ +  + L  +    +  +   +  +    Q    +     D+ P  
Sbjct: 76  RRPIAIVLALLTILAIIALTLGLIIPQLVAVVTNFMEILPRLFQSLDRLLERYEDLYPEI 135

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
           +        +  +     +     L ++ I       +      +   ++II     L  
Sbjct: 136 VSYMGNLDLNWQNMVRRTVSFAQGLTSSLIGSTIGAVTSVASWIVTIFIAIIITFYILMS 195

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
             R G    +   +  +         +  +      +   G  + A   G ++G   W+ 
Sbjct: 196 KERLGQQFHRLTKAYLKDKRYNQIHYVLAMANDAFYNFIAGEVVEAAILGCMVGFGMWIF 255

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           G P    +GV+T + A+IP         +   L++  +   A    ++  +   I    +
Sbjct: 256 GFPYASMIGVLTGVTAIIPLLGAYISGGLGFLLILMHSPVQALLFVVFIVVVQQIEGNLI 315

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            P +VG  + LP +     +  G   MG+ G+ IG  + +    + K  +   +   +  
Sbjct: 316 YPKVVGNSLGLPGMWVLIAVTVGGGLMGVAGMLIGVPIASAGYRLLKFDVNYREAKAQAP 375

Query: 357 SSN 359
              
Sbjct: 376 DDQ 378


>gi|315303146|ref|ZP_07873817.1| membrane protein YdbI [Listeria ivanovii FSL F6-596]
 gi|313628477|gb|EFR96939.1| membrane protein YdbI [Listeria ivanovii FSL F6-596]
          Length = 360

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 51/358 (14%), Positives = 114/358 (31%), Gaps = 26/358 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  + + R  +  +I   LY L+     +L   I  +    + +  + +       + ++
Sbjct: 23  LQNKSVKRVGVFLLITFILYLLRSQMNIILLTFIFSYLITRLENFILRRISIYRQIIVLL 82

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V +  + ++  +        ++ +LV                                
Sbjct: 83  LYVFIAAVIVLVFVKYIPVLGDQVNQLVKFGNSFFTT---------------------DS 121

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +      +  L+  F      +        +        +++   ++   FF      + 
Sbjct: 122 NNDFINYIVRLANQFDIMKYTEQGVSMILTYLTNVGTVLMNVFIALMLSLFFSLGKDHLI 181

Query: 186 QQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              +          + +                    IIA+   ++   A W+ G P  +
Sbjct: 182 SFTNQFSTSKIGFIYDEVKFFGAKFVGTFGKVIEAQFIIALVNAVLTTIALWILGFPQLM 241

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L ++  ++ +IP  G  IS   ++I     G +     + +   +   +    L P L+
Sbjct: 242 TLSIMVFLLGLIPVAGVIISLVPLTIIGYSIGGVEYIFYILIVVIVIHALESYVLNPKLM 301

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKEKISS 358
                LP   TF  L+ G    G+ GL +G PV+M  + V+       I++ K+ IS 
Sbjct: 302 SAKTNLPVFYTFIILIFGEHFFGIWGLIVGIPVVMFFLDVLGVTGQEEIEQPKDTISH 359


>gi|325983248|ref|YP_004295650.1| hypothetical protein NAL212_2698 [Nitrosomonas sp. AL212]
 gi|325532767|gb|ADZ27488.1| protein of unknown function UPF0118 [Nitrosomonas sp. AL212]
          Length = 602

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 54/360 (15%), Positives = 129/360 (35%), Gaps = 19/360 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M++ +L    +   + + ++L  LY+ +    PV  ++++ F   PI +    +      
Sbjct: 1   MKKNLLVTNNVSMLIALALVLGFLYWARIIVIPVALSILLTFLLTPIVAWLQQRGVARVV 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV-----------SKVVLANQHGIPVPRW 109
            +A+ A++++  +     ++     +  + +             +++   ++ GI     
Sbjct: 61  AVALAASLALSSIVGA--IWGVTSQIGSLLDTYPQYENNILSKLNQITERDRDGILDKLQ 118

Query: 110 L--SDIPGGMWASELWTKHLSHPQS--LKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           +    I   +  +     +L  P     KI ++     +   F            L+   
Sbjct: 119 VVTERITEKLTNNPAIEDNLPIPADKKEKIEAQPVRIVDDGPFQLSQLWSVFGPMLEPLA 178

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           +   +I+ + F   +   +  ++ SL      A+  +      + +    L   +I +G 
Sbjct: 179 NAGLIIVLVCFMLLNREDLRDRVISLIGVEQLAHTTRAFEDAGERVSRYLLMQLLINLGY 238

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFL 283
           G+ +    WL GVP     G   A++  IP  G    +   +++ LL+  +   A  +  
Sbjct: 239 GIAVALGLWLLGVPYAALWGFFGALLRYIPYLGAWLTAILPITLSLLLSPDWSLAIMVLA 298

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              +   I +  + P L G  I +        +       G +GL +   L   I V+ +
Sbjct: 299 MFCVLELITNMIIEPMLYGRGIGVSQAALLVCVAFWTWLWGPIGLILASPLTVCIVVLGR 358


>gi|187932049|ref|YP_001892034.1| PerM family protein [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|187712958|gb|ACD31255.1| PerM family protein [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 368

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 117/356 (32%), Gaps = 6/356 (1%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           N + I+   +M    + L FL  + AP+L+AL+I +    + +      +       V+ 
Sbjct: 16  NNEPIVFVGLMLFFYLVLTFLGDYIAPILAALVIAYLLDTLVNILQKFTKLKRI---VLV 72

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +  +   I  L  +F    + + +L+  V  A+     +   L ++           + 
Sbjct: 73  YIVYILFLIALLSLIFVLLPIIINQLIDFVKQASHILSSLKTSLEELSIKYPTILTEDQI 132

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            S       +    + +N   FI +  +    +     + +  + + +F+F +D   +  
Sbjct: 133 NSIVSWFDSIDWKKISSNVGSFILQNTATTLPVLFSVLIYLFLVPLMVFYFLKDKEKMIN 192

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
              S       A +   + + PK +     G  I  I    +    +    +   V L V
Sbjct: 193 WFKSFLPEENGALYYVWNDLKPK-LADYVRGKAIELIIVSTLTYIGFAYFNLNYAVLLAV 251

Query: 247 ITAIMAMIP-GGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
              +  +IP  G  I    V  + +L  G       + +   +   +    L P L    
Sbjct: 252 GVGLSVIIPYVGMVIITIPVIMVGILQFGLNGTFVSMLIVFFVIQALDGNLLVPLLFSEV 311

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           + +  +     ++      GL G+F    L  L           +   K +   N 
Sbjct: 312 LDMHPVGVVSAILIFGGIWGLWGIFFAIPLGLLFISGVNMFRNHLNGKKTQADINL 367


>gi|332141566|ref|YP_004427304.1| putative permease [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551588|gb|AEA98306.1| putative permease [Alteromonas macleodii str. 'Deep ecotype']
          Length = 357

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 53/318 (16%), Positives = 101/318 (31%), Gaps = 14/318 (4%)

Query: 31  FAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
             PVL A +I +   WP+    +       T    I  V  + + I+ L+ L      + 
Sbjct: 39  IMPVLVAAVIAYLLDWPVCR--LVNVGLGRTIACGIVMVGFITITILTLVGLVPIISKQS 96

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             L+ +  L  Q       W+  +P         ++     + +        +T      
Sbjct: 97  VNLIQETPLIWQK---AQEWILTLPDKYPDYVQVSQIHQMMEGINEKLVEVGETLISASF 153

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
              A           + +I + + +FF  +D       +  L          ++   +  
Sbjct: 154 SNIA-----NLAALLVYVILVPLMVFFMLKDKLFFLDGISRLLPKERRL-ITQVGHEMNS 207

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIY 268
            I +   G  I  I  G+V    + L  +   + LGV+     +IP  GA +    V++ 
Sbjct: 208 QIANYIRGKVIEIIIVGVVSCVTFVLMDLRYAILLGVLVGFSVLIPYIGAAVVTIPVAVV 267

Query: 269 LLIKGNIFN-ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            + +  I      L +   I   +    L P L    + L  L     ++      G  G
Sbjct: 268 AMFQWGISPEFWYLMIAYGIIQALDGNLLVPLLFSEAVSLHPLYIIVAVLVFGGLWGFWG 327

Query: 328 LFIGPVLMALIAVIWKES 345
           +F    L  L+  +    
Sbjct: 328 VFFAIPLATLVKAVVTAW 345


>gi|296331537|ref|ZP_06874007.1| putative integral inner membrane protein [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675700|ref|YP_003867372.1| putative integral inner membrane protein [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151304|gb|EFG92183.1| putative integral inner membrane protein [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413944|gb|ADM39063.1| putative integral inner membrane protein [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 388

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 72/200 (36%)

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                F     +  +SI+ +   LF+  +DG  +   +              +   +   
Sbjct: 170 TGVGNFIGALTEIIISIVTVPFILFYLLKDGKKLPVYILKFVPTRLKEQTYTVLSEMNHR 229

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G  I++   G +L   Y + G+     L VI A  +++P   P      +I + 
Sbjct: 230 LSSYIRGQIIVSFCIGFLLFIGYLIIGLDYASLLAVIAACTSIVPYLGPTIAITPAIIIA 289

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           I  +      L +   I   I  K + P ++G  + +  +   F L+   +  G++G+ +
Sbjct: 290 IVTSPLMLLKLVIVWTIVQLIEGKLISPQIMGKNLHIHPITIIFLLLTAGKLFGVVGIIL 349

Query: 331 GPVLMALIAVIWKESIMAIK 350
                A+  VI        K
Sbjct: 350 AIPGYAVAKVITTHLFDWFK 369


>gi|164688740|ref|ZP_02212768.1| hypothetical protein CLOBAR_02387 [Clostridium bartlettii DSM
           16795]
 gi|164602216|gb|EDQ95681.1| hypothetical protein CLOBAR_02387 [Clostridium bartlettii DSM
           16795]
          Length = 363

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 53/332 (15%), Positives = 118/332 (35%), Gaps = 13/332 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L     P L A II     P+      K   +   ++++  ++   +    ++ +    
Sbjct: 35  VLGSILTPFLIAFIIAAILNPLIKFSCKKLHINRAIISILFVLTFYTVASFIIILIGSKL 94

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           ++ ++ L +   L          ++ D        +L+     +  S    S + L +  
Sbjct: 95  LVLLQSLFT--TLPQFFTTYFEPYIRDT--FTHFEKLFLSLDPNVISALEESSSSLISTL 150

Query: 146 IDFIPRFASRFGMIFLDYCLSI-------IFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
            +F+ +F++        +  +I       +  II  FF   D   I   +          
Sbjct: 151 GNFVSKFSTMVVSYVSGFATTIPAIFLKTVITIIVTFFITIDFEKIINFIKRQLPESASK 210

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-G 257
             K+  + +   +    L   +I       +     +  +P+ + + V+ AI  ++P  G
Sbjct: 211 PIKESKKFITTTLFKCLLSYVLILSITFTEIAIGLTILQIPNAILIAVVIAIFDILPVLG 270

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
                   +I  L+ GN      + +   I   I    + P LVG  + L  + T   + 
Sbjct: 271 TGGIMIPWAIIALLYGNYTIGIGVAILYIIITIIR-NIIEPKLVGQQVGLHPVVTLISMF 329

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            G+  +G +G+   P+ +AL+  +  + I+ I
Sbjct: 330 VGLHFLGFIGMLGLPITIALLRYLNDKGIVKI 361


>gi|260584716|ref|ZP_05852462.1| conserved hypothetical protein [Granulicatella elegans ATCC 700633]
 gi|260157739|gb|EEW92809.1| conserved hypothetical protein [Granulicatella elegans ATCC 700633]
          Length = 362

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 56/332 (16%), Positives = 112/332 (33%), Gaps = 7/332 (2%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L    + ++   +I F              +      +   ++++ +F+  +L +    +
Sbjct: 34  LFDVISTLIYGAVIAFVLNVPMKKIEQYLVKLKVKAELRRPIAMVLVFLALILIVIALLV 93

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
           L +  L   +         V   L  + G           LS   S      + +    I
Sbjct: 94  LVLPTLAQTISQLGTVLSTVLTQLGKLLGSSEFVT--KDMLSTIVSGIQGQSSSISQALI 151

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY----WKK 202
            F+    S  G       ++   +I+  F F      ++     L +   P         
Sbjct: 152 GFLSGLTSNIG-NIFSSLMNAFLIIVFTFLFLSSKEHLAAMTSRLLKVFLPEKVVIKLTY 210

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           I ++  +      +   I A+  G+++   Y + G+P  V  G+   +++ IP   P+  
Sbjct: 211 IGQVALETYDQFLMSQLIEAVIIGVMIAVGYSVFGIPYGVMTGIFAGVLSFIPYVGPMIA 270

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             V    +   +   A    L   +   I    + P +VG  I LP L T      G   
Sbjct: 271 CVVGAIFIFTVSPTQALLSLLLYQVIQLIEGNLIYPRVVGQSIGLPALFTLAAASIGGNL 330

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            GLLG+     + A+I  + KE ++A +   +
Sbjct: 331 FGLLGMIFFTPVFAVIYRLVKEFVVAKENQVD 362


>gi|218462338|ref|ZP_03502429.1| putative transmembrane protein [Rhizobium etli Kim 5]
          Length = 508

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 61/173 (35%), Gaps = 2/173 (1%)

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
            L    S+  +I+ + F   +   +  +   L  +       +  +     +    L   
Sbjct: 100 LLGPIASLGLIIVVVIFMLLEREELRDRFIRLVGYGDLHRTTEAIQEAGSRVARYLLMQL 159

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNAT 279
           ++    G+ L    W  G+P+    G++  ++  +P   P+  T + ++L    +   + 
Sbjct: 160 VVNCAYGVPLALGLWTVGIPNPALWGMLAIVLRFVPYIGPVIATVLPLFLAFAVDPGWSL 219

Query: 280 CLFLWGAIEL--FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            L++     +     +  + P+L G    L  L      +      G +GL +
Sbjct: 220 VLWVAAIFVVLELTSNNVIEPWLYGSRTGLSPLAIIVAAIFWAWLWGPVGLVL 272


>gi|89894517|ref|YP_518004.1| hypothetical protein DSY1771 [Desulfitobacterium hafniense Y51]
 gi|89333965|dbj|BAE83560.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 357

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 126/352 (35%), Gaps = 3/352 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIIL-VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M+E        +  +I FI++ +  Y+    FAP + AL+      P     +   + + 
Sbjct: 4   MKEFAKKVAVTLLVIIAFILIPLVAYYALPHFAPFIFALVFALLLEPFNQWLMKWPKINR 63

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
              A I+    +  F++   FL      E  EL+  +     +        +     +  
Sbjct: 64  PVAANISYFVFLGGFLLLAYFLITKITSEAYELIKFIQRNIPNIQFWFNDANQRINELIM 123

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                      Q++   +      N +                + ++++   IAL+    
Sbjct: 124 VLPPEMVAQINQTITGFANQLSSINLLSTWGAQTISITASIPIFFITLLIFFIALYMINL 183

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           +   ISQ+  S  +         +   +            +++    +V      +  + 
Sbjct: 184 NLHHISQRFFSYFKKESKPKAIAVLSDLRNATIGFLKAQVVLSTFTYIVSLGGLLILDMR 243

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             + L ++  I+ ++P  G         I L+  G+IF+   L L   I + ++ K + P
Sbjct: 244 YALVLALLIVIVDILPILGTGSVLVPWGIVLITLGDIFSGLGLILL-FIVITVLRKIIEP 302

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            ++G  I L  L T   +  G + MG+LG+F+ P+L+     + K  ++  +
Sbjct: 303 KILGERIGLGPLSTLISIWVGFKVMGVLGVFLAPLLIIFYKALVKAKVIQYR 354


>gi|256396649|ref|YP_003118213.1| hypothetical protein Caci_7547 [Catenulispora acidiphila DSM 44928]
 gi|256362875|gb|ACU76372.1| protein of unknown function UPF0118 [Catenulispora acidiphila DSM
           44928]
          Length = 392

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 99/301 (32%), Gaps = 16/301 (5%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
            + ++ A+       P+ +  +++          +  + V+ LF   +  +F     E+ 
Sbjct: 84  LSVLMLAVFFATALDPMVTGLVNR-GLRRGLAVFVVAMGVLALFAGFVAVIFPPIDREVN 142

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI- 149
            L++ +          P +L+D+         +   L +   L    ++++ +N    + 
Sbjct: 143 SLINAI----------PGYLNDL----RNKSTYLGKLENKYHLIEKVKSWINSNKAGTLD 188

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                  G          +  I   F+F  +   I      L          +++  +  
Sbjct: 189 LNGILGAGKAVFSLLTGTLAGIALTFYFVANMPGIKNFAYHLVPVRRRPRVSELTDRILA 248

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            +    +G  IIA   G           +P   ALG++ A+  ++P        AV   +
Sbjct: 249 QVGKYVIGQMIIASIAGFFTWIWAMAWSIPYPAALGLVVALFGLVPVVGSSIGGAVVTLV 308

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            +  ++  A     +        D  + P +    + +  + T   ++ G    G++G  
Sbjct: 309 ALTVSLKVAIFTLAYYVAARLAEDYLIAPRVNRRTVDVHPMVTILAVLVGAALFGIVGAL 368

Query: 330 I 330
           +
Sbjct: 369 V 369


>gi|254822894|ref|ZP_05227895.1| hypothetical protein MintA_23394 [Mycobacterium intracellulare ATCC
           13950]
          Length = 380

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/310 (12%), Positives = 104/310 (33%), Gaps = 13/310 (4%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
           ++ ++         +  +    +    L F+    +  +  L  +V  + +      RWL
Sbjct: 64  WLDRRGLPRGGAVALVLLGGFAILGGILAFVILQFIDGLPGLTEQVTQSIESTR---RWL 120

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
            + P  + + ++ +   +  ++L               +   A        +   + + +
Sbjct: 121 INGPAHLRSEQIDSAGNAAIEALHNNQAK---------LTSGALSTAATVTELVTAAVLV 171

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           +  L FF   G +I + +  +          +        +        ++A+ +   +G
Sbjct: 172 LFTLIFFLYGGRNIWRYVVQIIPAHVRDRVHEAGNAGYGSLIGYVRATFLVALTDAAGVG 231

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
           +   + G+P  + L  +  + A IP  GA IS     +  L+   I  A           
Sbjct: 232 TGLAIMGIPLALPLASLVFLGAFIPLIGALISGLLAVVVALLAKGIVYALITLGVLIAVN 291

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            +    L+P ++G  + +  L     +  G    G++G  +    +A +   ++  +   
Sbjct: 292 QMEAHLLQPLVMGRAVSIHPLAVVLAISTGGVLAGIVGALLAVPTVAFLNNAFQVLLAPN 351

Query: 350 KENKEKISSN 359
            E + +  + 
Sbjct: 352 PEAEAEKQTE 361


>gi|163749189|ref|ZP_02156439.1| hypothetical protein KT99_20149 [Shewanella benthica KT99]
 gi|161331259|gb|EDQ02148.1| hypothetical protein KT99_20149 [Shewanella benthica KT99]
          Length = 265

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 64/205 (31%), Gaps = 7/205 (3%)

Query: 9   QGIMRWMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +  +R  ++F+++V  Y  ++ F  PVL   II      +        +      A    
Sbjct: 24  ESAIRIGLLFMLIVWTYDIIRPFVIPVLWGAIIAVALMSLTHKLEKAFKGRRGLAATALA 83

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKH 126
           V  + L ++P + +       +   +  +   +       + ++DIP  G    E+W   
Sbjct: 84  VIGVALLVIPFVLVSGSIFDGVSRTIEVLQSGDVQISGPTQRVADIPVIGDKLYEIWALF 143

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            ++ +         +KT          S          +  I  +     F      IS 
Sbjct: 144 STNLEKAVQHFLPEIKTAVGTIAAVIGSSLAT-----LMMFIISLAIAAGFMSHAEKISD 198

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVI 211
            +  +   +     ++   +    I
Sbjct: 199 AVSIIAVRVAGQNGEQWITLTAATI 223



 Score = 41.4 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
           +  AT   +W  +   + D  L+P L+G  + +P      G +GG+ T
Sbjct: 218 LTAATIFTIW-VLIAGVSDNFLKPLLMGRGVDVPMPVILIGAIGGMLT 264


>gi|241895354|ref|ZP_04782650.1| permease [Weissella paramesenteroides ATCC 33313]
 gi|241871328|gb|EER75079.1| permease [Weissella paramesenteroides ATCC 33313]
          Length = 384

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 48/321 (14%), Positives = 105/321 (32%), Gaps = 15/321 (4%)

Query: 30  FFAPVLSALIIG----FTSWPIYSSFISKKEE-----SSTFLAVIATVSVMCLFIVPLLF 80
           F   V   LII     +   P+  +            S  +   I  + ++ + +  +L 
Sbjct: 40  FIGAVFVPLIISGFLYYILNPVVVALQKIPLGKVKHVSRGWAITIVMLLLLGILVALVLT 99

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L    + ++  L+  + +           LS I               +   L+   +  
Sbjct: 100 LLPALVDQISGLIKNIPVLVDTIQHWGNQLSKINFSKEYG-----IDFNLDKLQQEVQNI 154

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
            KT         ++    +   + ++ I + +   +   DG  ++  +  +      +  
Sbjct: 155 GKTVVSGMATSLSAVIAKLT-GFTVTAITVPVMTIYMLNDGHKLAPFVQKVFPERQRSRI 213

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             I   + K +     G  +  I  G+     Y++ G    + LGV   I  MIP   P 
Sbjct: 214 SDILGRLNKTLAQYISGQVVEMIFVGVFTAVGYFVIGQKYALLLGVFAGITNMIPYVGPY 273

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
                ++++ I  +I+    +     I   I    + P ++G  + +  L     L+   
Sbjct: 274 IGLVPALFVAITDSIWQVVWVIAVVLIVQQIDSNLIYPRVMGASLHIHPLTIIVLLLAAG 333

Query: 321 RTMGLLGLFIGPVLMALIAVI 341
              G+ G+ +     A+I  I
Sbjct: 334 NIAGIAGMILAVPFYAVIRTI 354


>gi|197301411|ref|ZP_03166492.1| hypothetical protein RUMLAC_00143 [Ruminococcus lactaris ATCC
           29176]
 gi|197299568|gb|EDY34087.1| hypothetical protein RUMLAC_00143 [Ruminococcus lactaris ATCC
           29176]
          Length = 459

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 62/182 (34%)

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
            L++ + +I  I  LF   +      + + ++           +     ++     +G  
Sbjct: 223 ILNFIIGMIVSIYVLFSKEKFMCQAKKLVYAIFRPTKANLILHVGSKSNEIFGGFIIGKI 282

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNAT 279
           I +   G++      +  +P  + + VI  +  +IP   P      S  L+   +     
Sbjct: 283 IDSAIIGVLCFIGLSILNIPYTLLVSVIVGVTNVIPFFGPYIGAIPSALLIFLADPVKGV 342

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              ++  +        L P ++G    L      F ++      G+ G+ +G    A+I 
Sbjct: 343 YFVIFIILLQQFDGNILGPKILGNSTGLSAFWVVFSILIAGGLFGIPGMLLGVPTFAVIY 402

Query: 340 VI 341
            I
Sbjct: 403 YI 404


>gi|322384232|ref|ZP_08057942.1| permease-like protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321151124|gb|EFX44441.1| permease-like protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 374

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 53/322 (16%), Positives = 119/322 (36%), Gaps = 13/322 (4%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
           AP+  + +I     P ++ F+++K         I+T S + L +  +  L  +   ++  
Sbjct: 40  APLFWSFVIFLMIEP-FARFLNRKGLRKGLATTISTFSFIILILAFVTVLGLFLTNQVAS 98

Query: 92  LVSKVVLANQ--------HGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
           L+ K+                 + + + ++P      + + +  ++         T    
Sbjct: 99  LIEKIPGYANIIQHQIAGTTTYIQKKMQNLPPDTL--DKFQEFANNLTETATKFTTAFLK 156

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             +DF       F   F    ++ +  II  FF   +  S  +             +  +
Sbjct: 157 GILDFFKGGLLSFFTSFSGIMVNFVVGIILAFFLSLEIESWKKGARRKISPSLLNTFTFL 216

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISF 262
              V K +        I+     +++  +  +  V + ++L ++  ++ ++P  G    F
Sbjct: 217 KENVGKGVSGYIKSQLILVSITFVIVLVSLIILRVENALSLSIMAGVIDVLPLLGISAFF 276

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
               IYL I  N   A  L +   I L +V + + P + G  + +     F  ++  +  
Sbjct: 277 IPWIIYLFIINNYPLAIALSIVLGITL-LVRQIMEPKITGQALGVSPFTMFAFMIVSLSV 335

Query: 323 MGLLGLFIGPVLMALIAVIWKE 344
            G+ G  I PVL+  +  ++KE
Sbjct: 336 FGVFGFIISPVLLITLKALYKE 357


>gi|254373997|ref|ZP_04989479.1| hypothetical protein FTDG_00154 [Francisella novicida GA99-3548]
 gi|151571717|gb|EDN37371.1| hypothetical protein FTDG_00154 [Francisella novicida GA99-3548]
 gi|328676638|gb|AEB27508.1| Putative permease PerM (YfgO) [Francisella cf. novicida Fx1]
          Length = 368

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 117/356 (32%), Gaps = 6/356 (1%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           N + I+   +M    + L FL  + AP+L+AL+I +    + +      +       V+ 
Sbjct: 16  NNEPIVFVGLMLFFYLVLTFLGDYIAPILAALVIAYLLDTLVNILQKFTKLKRI---VLV 72

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +  +   I  L  +F    + + +L+  V  A+     +   L ++           + 
Sbjct: 73  YIVYILFLIALLSLIFVLLPIIINQLIDFVKQASHILSSLKTSLEELSIKYPTILTEDRI 132

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            S       +    + +N   FI +  +    +     + +  + + +F+F +D   +  
Sbjct: 133 NSIVSWFDSIDWKKISSNVGSFILQNTATTLPVLFSVLIYLFLVPLMVFYFLKDKEKMIN 192

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
              S       A +   + + PK +     G  I  I    +    +    +   V L V
Sbjct: 193 WFKSFLPEENGALYYVWNDLKPK-LADYVRGKAIELIIVSTLTYIGFAYFNLNYAVLLAV 251

Query: 247 ITAIMAMIP-GGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
              +  +IP  G  I    V  + +L  G       + +   +   +    L P L    
Sbjct: 252 GVGLSVIIPYVGMVIITIPVIMVGILQFGLNGTFVSMLIVFFVIQALDGNLLVPLLFSEV 311

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           + +  +     ++      GL G+F    L  L           +   K +   N 
Sbjct: 312 LDMHPVGVVSAILIFGGIWGLWGIFFAIPLGLLFISGVNMFRNHLNGKKTQADINL 367


>gi|50843048|ref|YP_056275.1| hypothetical protein PPA1574 [Propionibacterium acnes KPA171202]
 gi|289426485|ref|ZP_06428228.1| conserved hypothetical protein [Propionibacterium acnes SK187]
 gi|289428705|ref|ZP_06430388.1| conserved hypothetical protein [Propionibacterium acnes J165]
 gi|295131123|ref|YP_003581786.1| hypothetical protein HMPREF0675_4641 [Propionibacterium acnes
           SK137]
 gi|50840650|gb|AAT83317.1| conserved membrane protein, UPF0118 [Propionibacterium acnes
           KPA171202]
 gi|289153213|gb|EFD01931.1| conserved hypothetical protein [Propionibacterium acnes SK187]
 gi|289158103|gb|EFD06323.1| conserved hypothetical protein [Propionibacterium acnes J165]
 gi|291376946|gb|ADE00801.1| conserved hypothetical protein [Propionibacterium acnes SK137]
          Length = 433

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 107/336 (31%), Gaps = 28/336 (8%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFF-------APVLSALIIGFTSWPIYSSFISKK 55
           E   +  G+ +  I+ + + + +    F        AP+   L +  T++PI++  +  K
Sbjct: 78  EVATSKHGLPKLTIVLLTVAAAWLGLSFLHELSSVVAPLFFGLNLLITAYPIHTWLVKHK 137

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
                  A  A  +V+ +    ++ + +     + +L S                  IP 
Sbjct: 138 CPR-WISATTAGTAVIVVLAAGVVGMVWSVAAMINQLQSY-----------------IPQ 179

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
                       +     + +    LK      +    +            II ++  + 
Sbjct: 180 MEKIYTQLLHWSTQLGYSQDVIADKLKKIDPQQVMSVVTSVASDTTSVVTMIIVILTGMI 239

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F   D   +  +L   G                  IR  +L  T+  +   L   +A  +
Sbjct: 240 FMVMDTPQMHDRLRMAGSRKPDVVLA--LESFASGIRKYWLVTTVFGLIVALFDWAALLI 297

Query: 236 AGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
            GVP      + + +   IP  G  I     ++  L K     A  + +  ++  F++  
Sbjct: 298 IGVPLAGVWALFSFLTNYIPNIGFIIGVIPPALLALFKDGWVAAVAVVVSYSVLNFVIQS 357

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            ++P   G  + L    +F  L+      G LG  I
Sbjct: 358 IIQPKFAGDAVGLTPTMSFVSLLLWGWVFGALGTLI 393


>gi|56707621|ref|YP_169517.1| PerM family protein [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|89256861|ref|YP_514223.1| PerM family protein [Francisella tularensis subsp. holarctica LVS]
 gi|110670092|ref|YP_666649.1| PerM family protein [Francisella tularensis subsp. tularensis
           FSC198]
 gi|115315242|ref|YP_763965.1| PerM family protein [Francisella tularensis subsp. holarctica
           OSU18]
 gi|118497169|ref|YP_898219.1| PerM family protein [Francisella tularensis subsp. novicida U112]
 gi|134302443|ref|YP_001122413.1| PerM family protein [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|156503035|ref|YP_001429100.1| PerM family protein [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167009246|ref|ZP_02274177.1| PerM family protein [Francisella tularensis subsp. holarctica
           FSC200]
 gi|194323467|ref|ZP_03057244.1| domain protein of unknown function, putative [Francisella
           tularensis subsp. novicida FTE]
 gi|208778962|ref|ZP_03246308.1| conserved hypothetical membrane protein [Francisella novicida FTG]
 gi|224456691|ref|ZP_03665164.1| PerM family protein [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254368137|ref|ZP_04984157.1| permease perM [Francisella tularensis subsp. holarctica 257]
 gi|254370138|ref|ZP_04986144.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874441|ref|ZP_05247151.1| perM family protein [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|290954339|ref|ZP_06558960.1| PerM family protein [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312226|ref|ZP_06803025.1| PerM family protein [Francisella tularensis subsp. holarctica
           URFT1]
 gi|56604113|emb|CAG45112.1| PerM family protein [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|89144692|emb|CAJ80023.1| PerM family protein [Francisella tularensis subsp. holarctica LVS]
 gi|110320425|emb|CAL08495.1| PerM family protein [Francisella tularensis subsp. tularensis
           FSC198]
 gi|115130141|gb|ABI83328.1| conserved hypothetical membrane protein [Francisella tularensis
           subsp. holarctica OSU18]
 gi|118423075|gb|ABK89465.1| PerM family protein [Francisella novicida U112]
 gi|134050220|gb|ABO47291.1| conserved hypothetical membrane protein [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|134253947|gb|EBA53041.1| permease perM [Francisella tularensis subsp. holarctica 257]
 gi|151568382|gb|EDN34036.1| hypothetical protein FTBG_01242 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|156253638|gb|ABU62144.1| putative membrane protein [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|194322322|gb|EDX19803.1| domain protein of unknown function, putative [Francisella
           tularensis subsp. novicida FTE]
 gi|208744762|gb|EDZ91060.1| conserved hypothetical membrane protein [Francisella novicida FTG]
 gi|254840440|gb|EET18876.1| perM family protein [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158778|gb|ADA78169.1| PerM family protein [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 368

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 117/356 (32%), Gaps = 6/356 (1%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           N + I+   +M    + L FL  + AP+L+AL+I +    + +      +       V+ 
Sbjct: 16  NNEPIVFVGLMLFFYLVLTFLGDYIAPILAALVIAYLLDTLVNILQKFTKLKRI---VLV 72

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +  +   I  L  +F    + + +L+  V  A+     +   L ++           + 
Sbjct: 73  YIVYILFLIALLSLIFVLLPIIINQLIDFVKQASHILSSLKTSLEELSIKYPTILTEDRI 132

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            S       +    + +N   FI +  +    +     + +  + + +F+F +D   +  
Sbjct: 133 NSIVSWFDSIDWKKISSNVGSFILQNTATTLPVLFSVLIYLFLVPLMVFYFLKDKEKMIN 192

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
              S       A +   + + PK +     G  I  I    +    +    +   V L V
Sbjct: 193 WFKSFLPEENGALYYVWNDLKPK-LADYVRGKAIELIIVSTLTYIGFAYFNLNYAVLLAV 251

Query: 247 ITAIMAMIP-GGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
              +  +IP  G  I    V  + +L  G       + +   +   +    L P L    
Sbjct: 252 GVGLSVIIPYVGMVIITIPVIMVGILQFGLNGTFVSMLIVFFVIQALDGNLLVPLLFSEV 311

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           + +  +     ++      GL G+F    L  L           +   K +   N 
Sbjct: 312 LDMHPVGVVSAILIFGGIWGLWGIFFAIPLGLLFISGVNMFRNHLNGKKTQADINL 367


>gi|302877160|ref|YP_003845793.1| sporulation integral membrane protein YtvI [Clostridium
           cellulovorans 743B]
 gi|307687859|ref|ZP_07630305.1| sporulation integral membrane protein YtvI [Clostridium
           cellulovorans 743B]
 gi|302580017|gb|ADL54029.1| sporulation integral membrane protein YtvI [Clostridium
           cellulovorans 743B]
          Length = 349

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 49/339 (14%), Positives = 118/339 (34%), Gaps = 6/339 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++ +++  I+ ++++    +  P + A +            I K +  ++  A I T 
Sbjct: 10  KSLIFFILFTIVFITIFGTIQYTLPFVLAFLFSLLLKRPTKYLIEKGKLKTSLAAFITTT 69

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIPGG-MWASELWTKH 126
               + I  +L    Y + E+K L   V           R W +D+              
Sbjct: 70  IFCIVVIGLILLSINYLISELKSLTYNVTDIVTVNFDYIRKWFNDLVDSYNNLDPTLLDA 129

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           ++   + +    +    +    +  +              I+F I + +F  +D  S   
Sbjct: 130 INKNLASQSSKLSNYAVSLSSSVVSYLFGIISSLPTLLTLILFTIFSTYFITKDIVS-KD 188

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
                          K+      ++    L    +           + L GV     L +
Sbjct: 189 LTSKYKNMPNRNLITKLLENSKNMLGKYLLAYIFLLFMTFCENLIGFSLLGVDYAFLLSL 248

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +  ++ ++P  G  I +  + +  L++GN      L       + ++ + L P L+   +
Sbjct: 249 LCGVLDLLPIVGMIIVYIPLILTYLLQGNWIMVIALLFLYTFVM-LIRQVLEPKLLSSTL 307

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           K+  + +   +  G++  G LG+F   +L+ +   I++E
Sbjct: 308 KIHPVASLAAIFIGLKAYGFLGMFYCIMLL-VFYNIFRE 345


>gi|255655063|ref|ZP_05400472.1| hypothetical protein CdifQCD-2_05080 [Clostridium difficile
           QCD-23m63]
 gi|296451050|ref|ZP_06892792.1| sporulation integral membrane protein YtvI [Clostridium difficile
           NAP08]
 gi|296880597|ref|ZP_06904559.1| sporulation integral membrane protein YtvI [Clostridium difficile
           NAP07]
 gi|296260057|gb|EFH06910.1| sporulation integral membrane protein YtvI [Clostridium difficile
           NAP08]
 gi|296428551|gb|EFH14436.1| sporulation integral membrane protein YtvI [Clostridium difficile
           NAP07]
          Length = 350

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 47/318 (14%), Positives = 108/318 (33%), Gaps = 4/318 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           + I  ++ + +Y    + AP     II     PI     +K   +     ++ +   + +
Sbjct: 19  FCIYTLLFIFIYKAFPYIAPFFLGGIIALMINPISQKLENKFHINKGISTLVLSFLAVAI 78

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
                  +    + E+   ++ +    +       +  +       S     +    Q +
Sbjct: 79  VSTVTTIIVINSVKELMGFLNNISANPEDISNTIMYFLNKINDFMKSFQEIANFDIEQLV 138

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
              S   ++      +               + II + IA +F  +D   I     ++  
Sbjct: 139 NKFSGEVMQIT--KNLLTSILGLATSIPYIIIFIITLFIATYFIAKDLDKIENSFYNMFT 196

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  K + +     +       TI+       +  ++ L G+   + +G + A+M +
Sbjct: 197 VDVRKKVKNVKKEAGLSLVGYIRAYTILMAITFFAIWGSFALFGLKYGLIVGFVGALMDL 256

Query: 254 IPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP    I  +  V +Y  +  N F A  + +     L ++ + L P LV   + L  L T
Sbjct: 257 IPFLGIITIYLPVIVYYFLIKNYFIAISMTVI-FFVLSLIREILEPKLVSVNVGLNPLAT 315

Query: 313 FFGLVGGVRTMGLLGLFI 330
              +  G++  G++G+  
Sbjct: 316 LAAIFIGIQVKGIIGVIF 333


>gi|302520594|ref|ZP_07272936.1| integral membrane protein [Streptomyces sp. SPB78]
 gi|302429489|gb|EFL01305.1| integral membrane protein [Streptomyces sp. SPB78]
          Length = 367

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 54/338 (15%), Positives = 116/338 (34%), Gaps = 21/338 (6%)

Query: 11  IMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           ++  ++  +  V ++    LK    P+L A++      P+YS  + +     +  A I  
Sbjct: 27  VLLLLVTGVAAVGIWLCVELKTAVTPILLAVLGTALLRPLYSLLVHRAHVQRSLAAGITC 86

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
            +V+         +    +   ++++  +    +                W     T   
Sbjct: 87  AAVVAAVGGAGYIVTSAIVDNGQQILDSIRSGIED------------AASWVGAEDTSLD 134

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               + + L   F  T     I   +     +   +  + +  ++ +FFF RD     + 
Sbjct: 135 DITHNARQLLNKFGGTAATGVINGLS-----VVGSFVATAVLALLLMFFFLRDAGRALRG 189

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L  L         + ++R   + +     G TIIA+ +   +     + GVP  + LG +
Sbjct: 190 LRELSPGDSSDLVEAMARRAYQAVAGFMHGTTIIALIDATFITIGLLVLGVPGALGLGAL 249

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + A IP  GA +S     +  L       A  +         +    L+P +    ++
Sbjct: 250 VFLGAYIPYLGAFLSGAVAILVALADRGFVIALWVLGVVLAVQVLEGHLLQPVVQSRTVQ 309

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           +        +  G    G+LG+ +   L A    I++E
Sbjct: 310 MHPAVVMVTITAGASLAGILGMLLAVPLTAAAFGIFRE 347


>gi|297191665|ref|ZP_06909063.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197721600|gb|EDY65508.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 390

 Score = 76.8 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 44/311 (14%), Positives = 103/311 (33%), Gaps = 14/311 (4%)

Query: 37  ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV 96
           A  +     P      ++          +   +V+   +  ++ L      ++ E+V   
Sbjct: 39  AFFLALAIEPAVGRMAAR-GMRRGLATFLVFFAVLIAGVGFVVLLGSMLAGQIVEMVEDF 97

Query: 97  VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
               Q+   V RW++      + +EL    +            +++ +    +   A+  
Sbjct: 98  P---QYLDSVIRWINT----TFHTELSRVEVQDSLLRSDWLRKYVQNSATGVLDVSATVL 150

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
           G +F      ++ + +  F+F  DG  + + L S+          +   I          
Sbjct: 151 GGLF-----KLLTIFLFSFYFAADGPRLRRALCSVLPPAKQTEVLRAWEIAVDKTGGYLY 205

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNI 275
              ++A+  G+       +  VP   AL V   +++  IP        A+ + +    + 
Sbjct: 206 SRGLMALISGVAHYILLEILEVPYAPALAVWVGLVSQFIPTIGTYLAGALPMLIAFTVDP 265

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
           + A  +  +  I     +  L+P L    + +     F  +V G   +G +G  I    +
Sbjct: 266 WYALWVLGFVVIYQQFENYVLQPKLTARTVDIHPAVAFGSVVAGTALLGAVGALIAIPAV 325

Query: 336 ALIAVIWKESI 346
           A +       +
Sbjct: 326 ATLQAFLGAYV 336


>gi|182435547|ref|YP_001823266.1| hypothetical protein SGR_1754 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326776182|ref|ZP_08235447.1| protein of unknown function UPF0118 [Streptomyces cf. griseus
           XylebKG-1]
 gi|178464063|dbj|BAG18583.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326656515|gb|EGE41361.1| protein of unknown function UPF0118 [Streptomyces cf. griseus
           XylebKG-1]
          Length = 371

 Score = 76.8 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 43/330 (13%), Positives = 99/330 (30%), Gaps = 14/330 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L G    VL A  +     P      ++          +  ++V    +  ++ L     
Sbjct: 29  LIGLLTNVLIAFFLALAIEPAVGRMAAR-GMRRGLATFLVFLAVTIFGLGFVVLLGSMLA 87

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++ ++V +        I    W++       +       L H   L+   +        
Sbjct: 88  GQIVDMVDEFPKYIDSVI---NWVNQTFRTELSRVEVQDSLLHSDWLQKYVQNS------ 138

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
                         L     ++ + +  F+F  DG  + + L S+          +   I
Sbjct: 139 ---ATGVLDVSTTVLGGLFRLLTIFLFSFYFAADGPRLRRALCSVLPPARQTEVLRAWEI 195

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA-MIPGGAPISFTAV 265
                        ++A+  G+       + GVP   AL V   +++  IP        A+
Sbjct: 196 AVDKTGGYIYSRGLMALISGVAHYVLLVILGVPYAPALAVWVGLVSQFIPTIGTYLAGAL 255

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            + +    + + A  +  +  I     +  L+P L    + +     F  ++ G   +G 
Sbjct: 256 PMLIAFTVDPWYALYVLGFVVIYQQFENYVLQPKLTAKTVDIHPAVAFGSVIAGTALLGA 315

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G  +    +A +       +       + 
Sbjct: 316 VGALVAIPAVATLQAFLGAYVKRYDVTDDP 345


>gi|291546175|emb|CBL19283.1| Predicted permease [Ruminococcus sp. SR1/5]
          Length = 326

 Score = 76.8 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 83/263 (31%), Gaps = 10/263 (3%)

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           V  WL+ +    W  +L    +S         + +L    +  +          FLD  +
Sbjct: 14  VENWLNSVVEKGW--KLNPDMISQINQYSSRLQEYLTNTILPQMQFMMKNISASFLDLLV 71

Query: 166 ---SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS----RIVPKVIRSTFLGM 218
              + +   I   +   D      +       + P  W        R   K       G 
Sbjct: 72  FLKNFLIGAIVSLYILADKEGFVAKAKMAVYAVLPTKWATFLVHSMRFTHKTFGGFISGK 131

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA 278
            + +   G++      + G P  + + VI  +  +IP   P         L++  +   +
Sbjct: 132 ILDSAIIGVLCYVGTSIIGTPYAILVSVIVGVTNVIPFFGPYLGAVPCFLLILLVDPIQS 191

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMAL 337
               ++  I        L P ++G    L        ++ G    G+ G+ +G PV   L
Sbjct: 192 LYFLIFILILQQFDGNILGPKILGESTGLSSFMVIVAIMVGGGLFGVPGMIVGVPVFAVL 251

Query: 338 IAVIWKESIMAIKENKEKISSNF 360
            A +WK    ++ E      + F
Sbjct: 252 NAAVWKLIGRSLDEKDMSADAEF 274


>gi|227530354|ref|ZP_03960403.1| possible permease [Lactobacillus vaginalis ATCC 49540]
 gi|227349734|gb|EEJ40025.1| possible permease [Lactobacillus vaginalis ATCC 49540]
          Length = 374

 Score = 76.8 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 49/362 (13%), Positives = 128/362 (35%), Gaps = 30/362 (8%)

Query: 5   MLNPQGIMRWM---IMFIILVSL--------YFLKGF-------FAPVLSALIIGFTSWP 46
           ++N +    W+   I+F+ + +L        +  K F       F P+L +  + +   P
Sbjct: 2   IMNREKFYHWLFWPIVFLTIATLIFVCTKIQFIFKPFWTFLSVVFVPLLLSGFLYYMLNP 61

Query: 47  IYSSFIS----KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV-VLANQ 101
           I +  +     K   +    +++  V ++ + +  +  L    + E+ +LV+ +    + 
Sbjct: 62  ILNLIVKIKIGKFRINRGIASLLIVVLLILIIVWGISALIPPVVKEISQLVNHLPQTVSG 121

Query: 102 HGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL 161
               +   +   P        + +   H   L   ++  LK      +         +  
Sbjct: 122 LQSLMNDTIKHSPLKHVDLNAYYRQFDH--QLAAYAQKILKG-----LSERVGDIIGMVT 174

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
           +  +  I + + LF+  +DG  +   +             ++   +   + S   G  I 
Sbjct: 175 NITVVTITVPVMLFYMLKDGSKLVPAIQKWLSPHHAKEVNQLLGKMNNTLSSYIAGQVIE 234

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL 281
            +  G+     Y +   P  + LG++  +  +IP   P    A ++++ +         +
Sbjct: 235 CLFVGVFTSIGYLIIHEPLALVLGIVAGLCNIIPYVGPYIGIAPALFVSLTMAPDKLIWV 294

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            +   I   +    + P ++G  +K+  L     L+      G+ G+ +     A++  +
Sbjct: 295 IVVVLIVQQVDGNIIYPNIIGKTLKIHPLTIIVLLLAAGHIAGIAGMILCIPFYAVLKTV 354

Query: 342 WK 343
            +
Sbjct: 355 VE 356


>gi|330889390|gb|EGH22051.1| permease [Pseudomonas syringae pv. mori str. 301020]
          Length = 289

 Score = 76.8 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 107/279 (38%), Gaps = 6/279 (2%)

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLKILSE 138
           +    ++ +  L  ++    +    +  WL    +P       L        +    +SE
Sbjct: 1   MMALLLVLVPMLAKQLFRLYELAPQILDWLQHSALPWVQAKFGLADGFWKFDKIKAAISE 60

Query: 139 TFLKT-NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              +  + +  +   A+   +  + +  +++ + +  F+  RD   ++ ++  L      
Sbjct: 61  HMGQAGDIVSVVLSQATASSLALIGWLTNLVLIPVVCFYLLRDWDIMTGKIRGLLPRQRE 120

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
               K++    +V+ +   G  ++ +G G++  +   L G+   + +GVI  + A++P  
Sbjct: 121 GQIVKLAGECHEVLGAFIRGQLLVMVGLGVIYAAGLMLVGLELGLLIGVIAGLAAIVPYM 180

Query: 258 APISFTA---VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             +       V+      G+++    +     I   +    L P LVG  I L  +   F
Sbjct: 181 GFVIGIGSALVAGLFQFGGDLYPMMGIVAVFMIGQALEGMVLTPLLVGDRIGLHPVAVIF 240

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            ++ G    G  G+ +   + A+I V+ +      K+++
Sbjct: 241 AILAGGELFGFTGILLALPVAAVIMVLVRHMHDVYKDSE 279


>gi|332185811|ref|ZP_08387558.1| hypothetical protein SUS17_883 [Sphingomonas sp. S17]
 gi|332014169|gb|EGI56227.1| hypothetical protein SUS17_883 [Sphingomonas sp. S17]
          Length = 409

 Score = 76.8 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 48/317 (15%), Positives = 113/317 (35%), Gaps = 13/317 (4%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           FF P+ +AL+I     PI      ++  S+   A++  +  + +  + L  +        
Sbjct: 70  FFLPLTTALVIAIALVPILEWLERRRVPSA-LAALMCVLLFLIVANIALAAIIVPATDFF 128

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           + L S++     +  P+    S++    + ++   +  S P      +     ++ ++  
Sbjct: 129 RLLPSRIGRIQDNLAPLLDLYSNL--ERYVNKALRQVASTPIRQPQTAAVSPPSSILELA 186

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW-KKISRIVP 208
              A           +  +F ++ +FF       + ++          A    ++ + V 
Sbjct: 187 ATSAP-------GLIVQFLFGVLVVFFVLSGWTRMRRETIRGRTSFDGAMATARVIQEVV 239

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS--FTAVS 266
             + +    +TII +  G  +  A  L G+P  +  G I A++  IP   P+        
Sbjct: 240 DDVSAYLGTITIINLALGGAVAGALSLFGMPYPLMWGGIVALLNYIPYFGPVIGALLLAV 299

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
             L+   +I+ A            +    + P +VG  + +  +     L       G +
Sbjct: 300 GGLMTFNDIWVALAPPAIMYGMHLVEANLITPLIVGHRLTISPVLILVSLSFWGWVWGTV 359

Query: 327 GLFIGPVLMALIAVIWK 343
           G  +   L+ ++  + K
Sbjct: 360 GALLAVPLLIILQTVLK 376


>gi|148825479|ref|YP_001290232.1| hypothetical protein CGSHiEE_01890 [Haemophilus influenzae PittEE]
 gi|148715639|gb|ABQ97849.1| hypothetical protein CGSHiEE_01890 [Haemophilus influenzae PittEE]
          Length = 349

 Score = 76.8 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 52/341 (15%), Positives = 117/341 (34%), Gaps = 11/341 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             + +PQ +    I+    +S+YF     AP+L AL++ +      +      +      
Sbjct: 11  RRLSDPQAMGLLAILLFGFISIYFFGDLIAPLLIALVLSYLLEIPINFLNQYLKCPRMLA 70

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++   S + L  +  L L      +   L+S +            WL ++P        
Sbjct: 71  TILIFGSFIGLAAIFFLVLVPMLWNQTISLLSDLPAMFNKS---NEWLLNLPENYPELID 127

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           ++   S   S++     F ++     +        M  +   +    + + +FF  +D  
Sbjct: 128 YSMVDSIFNSVREKILGFGESAVKLSLASI-----MNLVSLGIYAFLVPLMMFFMLKDKS 182

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + Q +           +K + + + + I +   G  +  +   L+    + + G+   +
Sbjct: 183 ELLQGVSRFLPKNRNLAFK-VWKEMQQQISNYIHGKLLEILIVTLITYIIFLIFGLNYSL 241

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFL 300
            L     +  ++P  GA I    V++  L +  I       +       ++D   L P+L
Sbjct: 242 LLAFAVGLSVLVPYIGAVIVTIPVALVALFQFGISPTFWYIIIAFAVSQLLDGNLLVPYL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
               + L  L     ++      G  G+F    L  L+  +
Sbjct: 302 FSEAVNLHPLIIIISVLIFGGLWGFWGVFFAIPLATLVKAV 342


>gi|291485556|dbj|BAI86631.1| hypothetical protein BSNT_04582 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 388

 Score = 76.8 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 72/200 (36%)

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                F     +  +SI+ +   LF+  +DG  +   +              +   +   
Sbjct: 170 TGVGNFIGALTEIIISIVTVPFILFYLLKDGKKLPVYILKFVPTQLKEQTYTVLSEMNHR 229

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G  I++   G +L   Y + G+     L VI A  +++P   P      +I + 
Sbjct: 230 LSSYIRGQIIVSFCIGFLLFIGYLIIGLDYASLLAVIAACTSIVPYLGPTIAITPAIIIA 289

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           I  +      L +   I   I  K + P ++G  + +  +   F L+   +  G++G+ +
Sbjct: 290 IVTSPLMLLKLVIVWTIVQLIEGKLISPQIMGKNLHIHPITIIFLLLTAGKLFGVVGIIL 349

Query: 331 GPVLMALIAVIWKESIMAIK 350
                A+  VI        K
Sbjct: 350 AIPGYAVAKVITTHLFDWFK 369


>gi|149910488|ref|ZP_01899128.1| permease PerM [Moritella sp. PE36]
 gi|149806448|gb|EDM66420.1| permease PerM [Moritella sp. PE36]
          Length = 355

 Score = 76.8 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 115/356 (32%), Gaps = 14/356 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           +E   +P  +  ++++      +YF      P L A+++ +   WP+    + +   S T
Sbjct: 10  QERFSDPHAVTLFLLLVFGFSVIYFAGSLITPFLVAIVLAYLLDWPLIR--LMRLGLSRT 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +  VI  +  + + ++  L L      +   LV  +    + G      L      ++ +
Sbjct: 68  WATVIILLLFVTMMVMLTLGLIPTVWHQGVTLVKAMPTMLKQGQEFLLMLPQENPDIFNA 127

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           EL        Q   + S   + +     +   A+          +  I + + +FF  +D
Sbjct: 128 ELIKAASLAVQDHVVKSGEMILSASFASLFDIAAI--------LIYSILVPLLVFFMLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              + + L S+          ++   +   I +   G     I  G      ++   +  
Sbjct: 180 KTILVKALVSILPQ-NRRLAMEVWTEMNGQIANYIRGKVFEIIIVGFCTWLVFFFTDLQY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              L V+     +IP  GA      V  + L   G     T + +   I   +    L P
Sbjct: 239 AALLAVLVGFSVLIPYIGAAAVTVPVMVVGLFQWGLTPEFTYMMVAYGIVQALDGNLLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            L    + L  +     ++      G  G+F    L  L+  +            E
Sbjct: 299 LLFSEAVNLHPVAIIMSVLVFGGLWGFWGVFFAIPLATLVKAVLNAWPKRGDTPAE 354


>gi|328544000|ref|YP_004304109.1| Permease, putative [Polymorphum gilvum SL003B-26A1]
 gi|326413744|gb|ADZ70807.1| Permease, putative [Polymorphum gilvum SL003B-26A1]
          Length = 420

 Score = 76.8 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 48/347 (13%), Positives = 116/347 (33%), Gaps = 16/347 (4%)

Query: 2   RETMLNPQGIMRWMI-MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
            + M   + I  WM+ +   +V +        P ++ + + +   P+      +   S  
Sbjct: 58  DDRMTLRRQIQFWMLSLLAFIVFMLVFSAVLLPFVAGMALAYLLDPVADRLE-RVGMSRL 116

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +  +   +  + LF + LL L      ++   + ++         + R L  +    +  
Sbjct: 117 WATLTILLVFVLLFALFLLLLVPVLGNQLLGFLDRL-------PGLVRALHTLVTETFGD 169

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDF--IPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            L T      + L+      +         + +     G   +      +   +  F+  
Sbjct: 170 RLSTLAGLDIKDLQSSLGDIMSKAASWLGGLMQSVWSGGQALVSILSLFVVTPVVAFYLL 229

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   +  ++D           ++++R +   +     G   + +  GL       L G+
Sbjct: 230 LDWDRMVARIDGWLPRPHVETIRRLAREMDAAVAGFVRGQVSVCVLLGLFYAIGLMLVGL 289

Query: 239 PSHVALGVITAIMAMIPGGAPI----SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
              + +G+   +++ IP    I       AV++      +      +    A+  F+   
Sbjct: 290 NFGLLIGIGAGLVSFIPFVGAILGFVVSMAVALVQFWP-DWPLIAAVAAVFAVGQFLEGN 348

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L+P LVG  + L  +   F L       G +G+ +     A++ V+
Sbjct: 349 ILQPKLVGDSVGLHPVWLMFALFAFGSLFGFVGMLVAVPAAAMVGVL 395


>gi|83594849|ref|YP_428601.1| hypothetical protein Rru_A3520 [Rhodospirillum rubrum ATCC 11170]
 gi|83577763|gb|ABC24314.1| Protein of unknown function UPF0118 [Rhodospirillum rubrum ATCC
           11170]
          Length = 434

 Score = 76.8 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 54/333 (16%), Positives = 128/333 (38%), Gaps = 14/333 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R+ +   + ++  +   ++LV LYF +    P++ AL++     PI    + +++    
Sbjct: 74  LRQQLTTVRWLLTGLFAMMLLVFLYFGRDVLMPIVLALLLALMLSPI-VRLLRRRKVPEG 132

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             AV+ T+     F   +L + +     +   +       +        L +    +  +
Sbjct: 133 VAAVVVTLG----FAAGMLLIGFTISGPVATWLEDAPSIGKRIAHKLSSLRESFDVVLDA 188

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
               +  +   S        +   G   + + A      F  + ++I+  +    FF   
Sbjct: 189 SRQVEEAADTSSKDNTDRVVMAQPG--LLVKAADSLASGFTTFGVTIVITL----FFLAS 242

Query: 181 GFSISQQLDSLGEHLFPA-YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           G   ++++  +           ++ R +   + S  L + +I  G G+ +G A WLAG+P
Sbjct: 243 GSMFTEKIVHVMPLFRDKLRVLRVVRDIETEVSSYLLTVAMINAGLGVAVGCALWLAGMP 302

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLR 297
           +    G +  ++  +P  G+ I  + V++   +   ++  A    L       +  + L 
Sbjct: 303 NAFLWGGMAMVLNFLPYIGSMIGISLVALVSFVTFDSLGQALIPPLSYLAVTSVEGQFLT 362

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           P +VG  ++L  L     ++      G++G  I
Sbjct: 363 PAIVGRRLELNALSVMLAVLFWAWLWGIVGALI 395


>gi|323484731|ref|ZP_08090090.1| hypothetical protein HMPREF9474_01841 [Clostridium symbiosum
           WAL-14163]
 gi|323691799|ref|ZP_08106056.1| hypothetical protein HMPREF9475_00918 [Clostridium symbiosum
           WAL-14673]
 gi|323401968|gb|EGA94307.1| hypothetical protein HMPREF9474_01841 [Clostridium symbiosum
           WAL-14163]
 gi|323504165|gb|EGB19970.1| hypothetical protein HMPREF9475_00918 [Clostridium symbiosum
           WAL-14673]
          Length = 373

 Score = 76.8 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 109/336 (32%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSF-ISKKEESSTFLAVIATVSVMCLF 74
           ++  I   +  +  F      A I+      + +     +  +    +++   +  + L 
Sbjct: 31  VLVFIGWIIRLVFPFLCGSAIAFILNVPMRFVETRLPEKRVRKHRRVISLTVALLFVILI 90

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +  + FL    + +    +  ++      + V               +   +L       
Sbjct: 91  LGIVFFLVVPQITDTLVSLKDLIPQFFMNVQVMLEKKFGEYPEIVEYINNINLQIDWKDT 150

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                   T G   +        M       +     I   +      ++++Q   L   
Sbjct: 151 FEKIAGFVTTGAGTVLSSTLTAAMSIASGIATFGIAFIFAIYILLQKENLARQFKKLFYA 210

Query: 195 LFPAY----WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
            FP      + +I R+  +       G    A+  G +      L  +P  + +GV+ A 
Sbjct: 211 YFPERAVNEFIRICRMAEQTFSKFLAGQCTEAVILGTMFFITLSLLRLPYSLLIGVLIAF 270

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            A+IP        A+ I+L +  N   A    +   +   I    + P +VG  + LP +
Sbjct: 271 TALIPIFGAFIGCAIGIFLTLVVNPVQAVWFTIVFFVLQQIEGNLIYPHVVGNSVGLPSI 330

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
                +  G   MG++G+ I   L +++  + +E +
Sbjct: 331 WVLAAVSIGGSMMGVVGMLIFIPLCSVVYALVREDV 366


>gi|229494105|ref|ZP_04387868.1| hypothetical protein RHOER0001_1153 [Rhodococcus erythropolis
           SK121]
 gi|229318467|gb|EEN84325.1| hypothetical protein RHOER0001_1153 [Rhodococcus erythropolis
           SK121]
          Length = 385

 Score = 76.8 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/300 (14%), Positives = 93/300 (31%), Gaps = 16/300 (5%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           +G    ++ AL +     P+      +          +  + +  +  + L+      + 
Sbjct: 76  RGMLILIVVALFLAVGIEPMIVWLERR-HFRRWIAVTVVLLGIAVMLALFLVAAITPLVE 134

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           + ++  S       H       +SD+       E  T  L    S               
Sbjct: 135 QGRQFASHAPELLTHIRDRYPIVSDLDEKYHLEEHLTTQLDGSGSA-------------- 180

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            +       G            + +   +F  D   I   L  L  H        I   +
Sbjct: 181 -LATGLLGAGRAVFSAVADAGIVAVLTTYFLIDYPRIRTNLYRLVPHSRRPRAIAIGDQI 239

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
              +    LG  +I++   +   +   +  VP  + L ++ A++ +IP         V  
Sbjct: 240 LAGVGGYVLGNVLISVITAVCTFAWLLIFDVPYPLILALLVALLDLIPIVGSTIAGVVVA 299

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            + +  ++  A     +      + D  L P ++G  + +P L T   ++ G   +G++G
Sbjct: 300 LVSLTVSVPTALATVAFFIALRLLEDYLLVPKIIGKTVAVPALVTVVAVLLGGALLGIVG 359


>gi|302562443|ref|ZP_07314785.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
 gi|302480061|gb|EFL43154.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
          Length = 365

 Score = 76.8 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 49/328 (14%), Positives = 113/328 (34%), Gaps = 14/328 (4%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P++  L++   +WP  + F+ ++  +    A + TV  + +       +      E  +L
Sbjct: 47  PLIVGLLLTTLTWPP-TRFLRRRGMAPALAASLVTVLFLLVAAGTAALIAVPVTSESGKL 105

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
              VV   QH       L +   G   +    +      +     +     +    I   
Sbjct: 106 ADGVVEGVQH-------LREWAAGPPLNIGEAQIAGAFDTATARIQ-----DSAGAIATT 153

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
           A           ++ +  +  +FFF +DG      L              ++      + 
Sbjct: 154 AVTGVSTVFSGVVTAVLALFLMFFFLKDGPRFLPWLARQLPGRLATDVPAVAARCWDTLG 213

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLI 271
           +      ++ + + + +G   WL  VP  + L V+T + A +P  GA  +     +  L+
Sbjct: 214 AFVRSQALVGLLDAVFIGLGLWLLNVPLVLPLSVLTFVSAFVPIVGALFAGFVAVLIALV 273

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
              + NA  +     +   +     +P +    + L  +     +  G    G++G  + 
Sbjct: 274 SNGLMNALLVLAVIVVVQQLEGNVFQPMIQSRGLGLHAVVVLLAVTLGGSVAGIVGSLLA 333

Query: 332 PVLMALIAVIWKESIMAIKENKEKISSN 359
             + AL+AV+W      + +   +  ++
Sbjct: 334 VPVAALLAVVWNYLREQLADPPREPRAD 361


>gi|217977145|ref|YP_002361292.1| protein of unknown function UPF0118 [Methylocella silvestris BL2]
 gi|217502521|gb|ACK49930.1| protein of unknown function UPF0118 [Methylocella silvestris BL2]
          Length = 382

 Score = 76.8 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 82/219 (37%), Gaps = 6/219 (2%)

Query: 141 LKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
           L      +   F       G   +     ++   +  F+   D   +   +DSL      
Sbjct: 139 LVNQAAQWAGTFVKSIWSSGAALISLVSLLVLTPVVAFYMLLDWDKMIATVDSLVPLRHR 198

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-G 256
           A  ++++R +   +     G +++ +  GL  G    L G+   + +G+    ++ IP  
Sbjct: 199 ATVRELAREIDAALAGFLRGQSLVCLFLGLWYGVGLSLIGLNFGLLIGITAGFLSFIPYV 258

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIE--LFIVDKTLRPFLVGGPIKLPFLPTFF 314
           G+  +    ++  +++G       +   G +    F+    L P LVGG + L  +   F
Sbjct: 259 GSLTALVLSAVIAIVQGWPEWRLMIMALGVVVSGQFLEGNILSPKLVGGSVGLHPVWLIF 318

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L+      G  GL I     A   VI + ++   + +K
Sbjct: 319 ALLAFGSLFGFTGLIIAVPCAAAFGVILRFAVRRYRSSK 357


>gi|226311109|ref|YP_002771003.1| hypothetical protein BBR47_15220 [Brevibacillus brevis NBRC 100599]
 gi|226094057|dbj|BAH42499.1| conserved hypothetical membrane protein [Brevibacillus brevis NBRC
           100599]
          Length = 343

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 51/342 (14%), Positives = 127/342 (37%), Gaps = 4/342 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I + +I+ ++L    FL  +  P L AL+      P+    I +   +     + A   
Sbjct: 2   TIRKMIILLLVLAVGLFLLPYSIPFLLALLTAILVEPLVLFLIKRLRTNRMSAVITAFFL 61

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            +  F + L ++    +++  +L  ++   +QH   +      +    + + L  + +S 
Sbjct: 62  FLISFGIVLYWIGTQIVIQGIDLAQRLPAYSQHIFELVESYL-MSWETYYASLPAETVSE 120

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            QS+    +++  T+    + +       I   + +S I  ++ALF    D   +     
Sbjct: 121 IQSVFAGLKSWALTSAST-VAKGILGVAAIIPGFLISTIIYLVALFLISLDLPKLRAGFM 179

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +         + +   + +          I+++    +      +  V     + ++  
Sbjct: 180 RMFTVSAREKVEVVISQLNRATLGFLRAQIILSLMTFALSLLGLLILQVKYAAVISLMIV 239

Query: 250 IMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            + ++P  G        +IY  + GN   A  L +   + + +V + + P ++   + + 
Sbjct: 240 FVDILPILGTGSFLVPWAIYTFLMGNSSLAIGLIVI-FLVITVVRRIIEPKILASNLGIS 298

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            L     +  G + +G  GL +GP L+ +   + K   +  K
Sbjct: 299 ALAALVSMFLGFQVLGFFGLILGPALVIIYEALRKAGFLNFK 340


>gi|261418248|ref|YP_003251930.1| sporulation integral membrane protein YtvI [Geobacillus sp.
           Y412MC61]
 gi|297529102|ref|YP_003670377.1| sporulation integral membrane protein YtvI [Geobacillus sp. C56-T3]
 gi|319767792|ref|YP_004133293.1| sporulation integral membrane protein YtvI [Geobacillus sp.
           Y412MC52]
 gi|261374705|gb|ACX77448.1| sporulation integral membrane protein YtvI [Geobacillus sp.
           Y412MC61]
 gi|297252354|gb|ADI25800.1| sporulation integral membrane protein YtvI [Geobacillus sp. C56-T3]
 gi|317112658|gb|ADU95150.1| sporulation integral membrane protein YtvI [Geobacillus sp.
           Y412MC52]
          Length = 372

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 98/312 (31%), Gaps = 12/312 (3%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           P+  +   K +        +  + +       +  L    +   + L   V    Q  I 
Sbjct: 48  PLVDALERKAKMPRWLAVSVTLIMLFAAVAGLVTLLVAEIVSGTQYLARVVPEKFQALIT 107

Query: 106 VPRWL---SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD 162
                     IP     + ++    +  Q   + +   +       +  F          
Sbjct: 108 YMETFVADQIIPIYKDLAGMFKSLSATQQDTIMQNIQAVGKKIGTTVGEFVQSILQNIPQ 167

Query: 163 YCL-------SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
                       IF ++A FF  +D   + +              K +   + + +    
Sbjct: 168 LLAWLPNAATVFIFSLLATFFISKDWRRLVRMAQQWLPTKARTSGKTVFLDLKRALFGFI 227

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGN 274
                +     +++     +  V   + + +I   + ++P  G  I F    IY +  G+
Sbjct: 228 KAQATLISITTVIVLIGLLILRVDYAITIALIIGFVDLLPYLGTGIVFVPWIIYTMASGD 287

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
           I  A  L +   + L    + + P ++   I L  L T   L  G + +G LGL  GPV 
Sbjct: 288 IPFAIGLGVLYVVVLVQ-RQIMEPKVLSSTIGLDPLATLIALFVGFKLLGFLGLIAGPVA 346

Query: 335 MALIAVIWKESI 346
           + +I  +   ++
Sbjct: 347 LVIIRTLHSANV 358


>gi|89070129|ref|ZP_01157458.1| Lipocalin-related protein and Bos/Can/Equ allergen [Oceanicola
           granulosus HTCC2516]
 gi|89044246|gb|EAR50392.1| Lipocalin-related protein and Bos/Can/Equ allergen [Oceanicola
           granulosus HTCC2516]
          Length = 356

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 56/330 (16%), Positives = 121/330 (36%), Gaps = 14/330 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             +  V L+FL     P L      +   P+      +      F  +  TV  + +F  
Sbjct: 16  ALVFAVVLWFLGDALTPFLLGGAFAYILDPVADRLE-RLGMRRLFAVITITVLAILVF-- 72

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +L +       +++L   +  A +  I +  WL+         +L  +  +  Q L  +
Sbjct: 73  -VLLVLLVVPTLVRQLTQLIETAPELFIRLRDWLA-----ARFPDLVDEGSTIRQQLASI 126

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            ET     G   +   A    + F++  + ++ + +  F+   D   +  ++D+L     
Sbjct: 127 GETIAARGGE--MLSAALSSALSFVNVLVLLVIVPVVTFYLLLDWDRMVARIDTLLPREH 184

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               ++++  + + + S   G  ++ + +G     +  L G+   V +G    ++  IP 
Sbjct: 185 APTIRRLASEIDETLSSFIRGQGLVMLIQGTFYAVSLMLVGLQFGVVVGAFAGLVTFIPY 244

Query: 257 GAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
              I   A++I L +    G       +        F+    L P LVG  + L  +   
Sbjct: 245 VGAIVGGALAIGLALFQFWGEWHMIALVAAIFFGGQFLEGNILTPLLVGDSVGLHPVWLL 304

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             L       G +GL +   + A++ V+ +
Sbjct: 305 LALAIFGAIFGFVGLLVAVPVAAMLGVLTR 334


>gi|330960589|gb|EGH60849.1| permease [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 260

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 88/214 (41%), Gaps = 3/214 (1%)

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            + +  +   A+   +  + +  +++ + +  F+  RD   ++ ++  L          K
Sbjct: 37  GDIVSVVLSQATASSLALIGWLTNLVLIPVVCFYLLRDWDIMTGKIRGLLPRQREGQIVK 96

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           ++    +V+ +   G  ++ +G G++  +   L G+   + +GVI  + A++P    +  
Sbjct: 97  LAGECHEVLGAFIRGQLLVMVGLGVIYAAGLMLVGLELGLLIGVIAGLAAIVPYMGFVIG 156

Query: 263 TA---VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                V+      G+++    +     I   +    L P LVG  I L  +   F ++ G
Sbjct: 157 IGSALVAGLFQFGGDLYPMMGIVAVFMIGQALEGMVLTPLLVGDRIGLHPVAVIFAILAG 216

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               G  G+ +   + A+I V+ +      K+++
Sbjct: 217 GELFGFTGILLALPVAAVIMVLVRHMHDVYKDSE 250


>gi|55378747|ref|YP_136597.1| HTR-like protein [Haloarcula marismortui ATCC 43049]
 gi|55231472|gb|AAV46891.1| HTR-like protein [Haloarcula marismortui ATCC 43049]
          Length = 394

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 57/348 (16%), Positives = 117/348 (33%), Gaps = 32/348 (9%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFL----------AVIATVSVMCLFIVPLL 79
           F   ++  + + + S PIY          S             A       +  F+V + 
Sbjct: 31  FLPTLVFTVFLYYASRPIYRRLGRLPLPKSFLKRAVPYQKQVHAAATIFFFLLPFVVLVG 90

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS-HPQSLKILSE 138
           +     + E++    +  L   +           P G  A   +++ L+  P  +  L  
Sbjct: 91  YTLVLVIPELQSFFGEGGLGAAYLSQFQELQGGSPPGPLADLGFSEVLAMGPAEVIDLLR 150

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                + +  +         +     L +  M    ++   DG  +        +     
Sbjct: 151 NATVQSWLGRVSDTLIGSLSLLTSLLLRVFIMFAGTYYLLTDGPRLVGWFLDTFD--GSG 208

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--------VPSHVALGVITAI 250
             ++ +  V + + S   G  + A+  G++    + L          +P    +G +T I
Sbjct: 209 VLREYAAAVDEELSSILFGNILNALVTGVIGIFVFSLYNLVAPGSVQIPFAPLVGALTGI 268

Query: 251 MAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--------FIVDKTLRPFLV 301
            ++IP  G  I +  V++ L +   +   T    W A+ L         I D  +RP++ 
Sbjct: 269 GSLIPVVGMKIVYLPVAVLLAVSAVVTGQTAALAWVALFLVVTLVVVDTIPDFLIRPYVS 328

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           G           F  + G    G  G+F+GP+L+ L A  ++  +  I
Sbjct: 329 GDLT--HVGLLMFAYILGPIAFGFYGIFLGPMLLVLAAQFFRIIVPYI 374


>gi|114563724|ref|YP_751237.1| hypothetical protein Sfri_2557 [Shewanella frigidimarina NCIMB 400]
 gi|114335017|gb|ABI72399.1| protein of unknown function UPF0118 [Shewanella frigidimarina NCIMB
           400]
          Length = 404

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 43/315 (13%), Positives = 101/315 (32%), Gaps = 22/315 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + IIL  +        P + +  +     P        +     +L++I  +  + L  +
Sbjct: 20  VVIILAGIKTASPIVVPFVLSAFLAVICNPAIVLMTRYRI--PKWLSIILMMGFIVLMGL 77

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L  L    + E  + + K                           W        +++I 
Sbjct: 78  WLASLVGSSVTEFSKEMPKYREQLIEQFA-----------------WILEKLQDFNIQIS 120

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +  L            +       +   ++  +I+ + F   +  S+ ++   L     
Sbjct: 121 QQKVLDYFDPGMALSMTTNMLSGVGNVMANLFLIILTIVFMLFEAQSMPRKF-HLALDAP 179

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
               K+I + +  V +   +   ++++   +V+G    + GV   +   VI  +   IP 
Sbjct: 180 DKRLKQIDKFLQSVNQYMVIKT-LVSLATAVVVGIGLTIIGVDYALLWAVIAFLFNYIPN 238

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ I+     +   I+     A    L       ++   + P  +G  + L  L  F  
Sbjct: 239 IGSIIAAIPAVLLAFIQMGPGAAGITGLLYVGTNMVMGNMVEPRFMGRGLGLSTLVVFLS 298

Query: 316 LVGGVRTMGLLGLFI 330
           L+     +G +G+ +
Sbjct: 299 LIFWGWLLGSVGMLL 313


>gi|241664037|ref|YP_002982397.1| hypothetical protein Rpic12D_2453 [Ralstonia pickettii 12D]
 gi|240866064|gb|ACS63725.1| protein of unknown function UPF0118 [Ralstonia pickettii 12D]
          Length = 356

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 55/346 (15%), Positives = 119/346 (34%), Gaps = 14/346 (4%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           +    + +    +  + L  L  L     P + A I+ +   P        +        
Sbjct: 7   SQETKRTLAWIAVALVFLALLKALAPTLTPFVFAFILSYILHPGVEWLQRHRVPR----- 61

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
               V  + L I+ L  +    ML +  ++ + + A +  +P      +        EL 
Sbjct: 62  ----VLGVFLMILVLTVVGVALMLLILAVLQREIPAIREQLPGMLAKLNAFLSPKLDELG 117

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRD 180
                    L+ L    L  +  D + R  +     G   +        + I +F+   D
Sbjct: 118 LHVSFDFPGLRALLTEQLAASPDDVVARVLTYLRVSGSAAVQVLGLFFLVPIVMFYLLMD 177

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              + +++++     +    ++++     ++     G  I+ +   +   +   LAG   
Sbjct: 178 WNMLMRRVETAVPRRWLPKARELAAETDGLLSQYLRGQIIVMLVLAVYYSAGLALAGFDV 237

Query: 241 HVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + +G+ T +   IP          A+   LL  GN++    + +   I  F+    L P
Sbjct: 238 ALPVGIFTGLAVFIPYIGFGVGLTLAILAALLQFGNLYGLLAVAVVYGIGQFLEGFYLTP 297

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            LVG  I L  L     L+   +  G  G+ +   + A++ V  ++
Sbjct: 298 RLVGERIGLHPLAVILALLAFGQLFGFFGILLALPMSAVLLVGLRQ 343


>gi|218135136|ref|ZP_03463940.1| hypothetical protein BACPEC_03041 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990521|gb|EEC56532.1| hypothetical protein BACPEC_03041 [Bacteroides pectinophilus ATCC
           43243]
          Length = 387

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 110/354 (31%), Gaps = 24/354 (6%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE----------ESSTFLA------ 63
           +   + FL     P +    I F             +           S T  A      
Sbjct: 31  VFAGIEFLWDLIFPFVLGAAIAFLLNLPMRGIEKLLKKFMPLIQGKNNSKTSAAERLLRP 90

Query: 64  --VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++ T   +   I  ++ +    ++   E + +  +A         WL          E
Sbjct: 91  VSLLLTFGCVIAVISIVIGVVLPQLVSTMESIGQAFMA--WLPQFQDWLQKTFADNPEIE 148

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            +   +         S      NG   I        M  +    +    ++   +     
Sbjct: 149 KYIGDVQIDWVAVFDSVKNFIFNGATNILSHTFSATMGIISGVTTFFIAVVFACYILMQK 208

Query: 182 FSISQQLDSLGEHLFPAYW----KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             +  Q+  + +  F          ++ +  ++  S   G  + A   G +      +  
Sbjct: 209 EKLESQVRRIIKVTFSEKTVGKINYVASLTHRIFCSFITGQCLEACILGFMFFICMLIFR 268

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           +P  + + V+ A MA+IP         V   L++  + F A    +   +   I    + 
Sbjct: 269 LPYALLIAVLIAFMALIPIVGAFIGCIVGALLILLIDPFKALFFVIMFLVLQQIEGNLIY 328

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           P +VGG + LP +     +  G   MG++G+ +   L+++I  +    +   ++
Sbjct: 329 PHVVGGSVGLPSIWVLMAVTIGGSLMGIVGMLVFIPLVSVIYSLIGSWVRQREK 382


>gi|54113873|gb|AAV29570.1| NT02FT1096 [synthetic construct]
          Length = 368

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 117/356 (32%), Gaps = 6/356 (1%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           N + I+   +M    + L FL  + AP+L+AL+I +    + +      +       V+ 
Sbjct: 16  NNEPIVFVGLMLFFYLVLTFLGDYIAPILAALVIAYLLDTLVNILQKFTKLKRI---VLV 72

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +  +   I  L  +F    + + +L+  V  A+     +   L ++           + 
Sbjct: 73  YIVYILFLIALLSLIFVLLPIIINQLIDFVKQASHILSSLKTSLEELSIKYPTILTEDRI 132

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            S       +    + +N   FI +  +    +     + +  + + +F+F +D   +  
Sbjct: 133 NSIVSWFDSIDWKKISSNVGSFILQNTATTLPVLFSVLIYLFLVPLMVFYFLKDKEKMIN 192

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
              S       A +   + + PK +     G  I  I    +    +    +   V L V
Sbjct: 193 WFKSFLPEENGALYYVWNDLKPK-LADYVRGKAIELIIVSTLTYIGFAYFNLNYAVLLAV 251

Query: 247 ITAIMAMIP-GGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
              +  +IP  G  I    V  + +L  G       + +   +   +    L P L    
Sbjct: 252 GVGLSVIIPYVGMVIITIPVIMVGILQFGLNGTFVSMLIVFFVIQALDGNLLVPLLFSEV 311

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           + +  +     ++      GL G+F    L  L           +   K +   N 
Sbjct: 312 LDMHPVGVVSAILIFGGIWGLWGIFFAIPLGLLFISGVNMFRNHLNGKKTQADINL 367


>gi|309781371|ref|ZP_07676107.1| phosphoribosylaminoimidazole-succinocarboxamide (SAICAR) synthetase
           [Ralstonia sp. 5_7_47FAA]
 gi|308919784|gb|EFP65445.1| phosphoribosylaminoimidazole-succinocarboxamide (SAICAR) synthetase
           [Ralstonia sp. 5_7_47FAA]
          Length = 356

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 55/346 (15%), Positives = 119/346 (34%), Gaps = 14/346 (4%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           +    + +    +  + L  L  L     P + A I+ +   P        +        
Sbjct: 7   SQETKRTLAWIAVALVFLALLKALAPTLTPFVFAFILSYILHPGVEWLQRHRVPR----- 61

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
               V  + L I+ L  +    ML +  ++ + + A +  +P      +        EL 
Sbjct: 62  ----VLGVFLMILVLTVVGVALMLLILAVLQREIPAIREQLPGMLAKLNAFLSPKLDELG 117

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRD 180
                    L+ L    L  +  D + R  +     G   +        + I +F+   D
Sbjct: 118 LHVSFDFPGLRALLTEQLAASPDDVVARVLTYLRVSGSAAVQVLGLFFLVPIVMFYLLMD 177

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              + +++++     +    ++++     ++     G  I+ +   +   +   LAG   
Sbjct: 178 WNMLMRRVETAVPRRWLPKARELAAETDGLLSQYLRGQIIVMLVLAVYYSAGLALAGFDV 237

Query: 241 HVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + +G+ T +   IP          A+   LL  GN++    + +   I  F+    L P
Sbjct: 238 ALPVGIFTGLAVFIPYIGFGVGLTLAILAALLQFGNLYGLLAVAVVYGIGQFLEGFYLTP 297

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            LVG  I L  L     L+   +  G  G+ +   + A++ V  ++
Sbjct: 298 RLVGERIGLHPLAVILALLAFGQLFGFFGILLALPMSAVLLVGLRQ 343


>gi|134103784|ref|YP_001109445.1| hypothetical protein SACE_7364 [Saccharopolyspora erythraea NRRL
           2338]
 gi|291005758|ref|ZP_06563731.1| hypothetical protein SeryN2_14654 [Saccharopolyspora erythraea NRRL
           2338]
 gi|133916407|emb|CAM06520.1| protein of unknown function UPF0118 [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 392

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 84/237 (35%), Gaps = 6/237 (2%)

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
            WLS  P  +   +  T ++   +     ++  L       +   A  FG    ++   +
Sbjct: 124 DWLSTGPLHLN-DQQITTYVEQAEEWLKNNQATLTQGVTSGVLTTAGTFG----NFLTGL 178

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           +  +  L FF  DG  +   +  +          +        +        ++A+ + L
Sbjct: 179 LLALFTLIFFLYDGRRVWLFVIRIVPAENRDRIDRAGSRGFASLVGYVRATALVAVVDAL 238

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGA 286
            +       GVP  V L  +  +   +P    ++  AV++ + L+      A  +     
Sbjct: 239 GIWIGLVAVGVPLAVPLAALVFLGGFVPIVGAVASGAVAVLVALVTNGWIAALIVLGVVL 298

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               I    L+P L+G  ++L  L     +  GV   G++G  +   L+A++    +
Sbjct: 299 AVQQIEGNVLQPLLLGRAVQLHALAVVLAISVGVVISGIIGALLAVPLVAVLNSAIR 355


>gi|154503457|ref|ZP_02040517.1| hypothetical protein RUMGNA_01281 [Ruminococcus gnavus ATCC 29149]
 gi|153795557|gb|EDN77977.1| hypothetical protein RUMGNA_01281 [Ruminococcus gnavus ATCC 29149]
          Length = 400

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 48/349 (13%), Positives = 113/349 (32%), Gaps = 10/349 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA------VIATV 68
           +I+ ++   +  +  F      A +I              +   +  +A      V   +
Sbjct: 30  LILDVLGQGVGIVYPFLLGGAIAFVINVPMSFFEEKLFQNQMMKNKKVAQRLARPVSLII 89

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +++ +  V  L +F          +S              W  +I       + W   L+
Sbjct: 90  TLIVVVSVIGLVVFGVLPKLGDTFISIGKGIQSFMPKAQSWAEEIFHNNKEIKEWLDSLT 149

Query: 129 HPQSLKILSETFLKTNGIDFIPR----FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                 I       T+G   +       A R       + ++ +F    L    +    I
Sbjct: 150 LDWDKIINEVVKFFTSGASSVLGSTFVVARRIASGITTFVIAFVFACYILLQKEKLNIQI 209

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + + +  +         +  +  +   +   G  + A+  G +      +  +P  + +
Sbjct: 210 RKVMYAYMKEDLVKKVLDVCSLSYRTFSNFLTGQCLEAVILGTMFVICMGILQMPYAMLI 269

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           GV+ A  A+IP         V  +L++      A    +   I   I    + P +VG  
Sbjct: 270 GVLIAFTALIPIFGAFIGCVVGAFLILTVAPMKALVFVIMFLILQQIEGNLIYPRVVGSS 329

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           + LP +     +  G   MG++G+ +   +++++  + +  +    E K
Sbjct: 330 VGLPSIWVLAAVSIGASLMGIVGMLVFIPIVSVLYALLRGDVYEHLEKK 378


>gi|94501026|ref|ZP_01307550.1| membrane protein, PerM family protein [Oceanobacter sp. RED65]
 gi|94426773|gb|EAT11757.1| membrane protein, PerM family protein [Oceanobacter sp. RED65]
          Length = 361

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 49/342 (14%), Positives = 108/342 (31%), Gaps = 24/342 (7%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
            V +  +    AP L+++++ +       +             ++  + ++    V L+ 
Sbjct: 31  FVIILTMGAILAPALASVVLAYLLQGPLLALKRLGVGHLAASVLVFLLFLIVCLAVILVL 90

Query: 81  ---LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
              ++        EL + +    +  + +P    D+        L          L    
Sbjct: 91  APAVWTQITQLFGELPNMLNQMQKLAVVLPERYPDVFDEAQIKALGAAMAEEIGRL---- 146

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ---LDSLGEH 194
                          +       +   + +I + I +FFF +DG  + +    +      
Sbjct: 147 --------GQAAVELSLSTLPNLVAILIYMILVPILVFFFLKDGDVMVRWWVSIMPTKRI 198

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L    W+++ +     IR   L + I+    G V   A+ + GV     L ++     +I
Sbjct: 199 LIGRVWREMDQQFANYIRGKVLEIVIV----GFVTYIAFAIMGVRYAALLALLVGFSVVI 254

Query: 255 P-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P  GA +    V +    + G   +   L     I   +    L P L    + L  +  
Sbjct: 255 PYIGAAVVTVPVVLIGYFQWGLTSDFYYLVAVYFIIQALDGNVLVPLLFSEAVNLHPVVI 314

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
              ++      GL G+F    L  L   +       ++  ++
Sbjct: 315 ILSVLMFGGLWGLWGVFFAIPLATLFKAVLTAWPRGVRAAQQ 356


>gi|258621078|ref|ZP_05716112.1| permease PerM, putative [Vibrio mimicus VM573]
 gi|262166255|ref|ZP_06033992.1| permease PerM [Vibrio mimicus VM223]
 gi|258586466|gb|EEW11181.1| permease PerM, putative [Vibrio mimicus VM573]
 gi|262025971|gb|EEY44639.1| permease PerM [Vibrio mimicus VM223]
          Length = 356

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 59/353 (16%), Positives = 122/353 (34%), Gaps = 14/353 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P       I+    +++YF     AP+L A+++ +   WP+    + +     T   VI
Sbjct: 15  DPHAASLVAILLFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQ--LRRLRIPRTVAVVI 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
                  L I+ +  L      ++  L++ V           ++++ +P           
Sbjct: 73  VITVFTGLMILAVFGLVPTIWKQVGNLINDVPNMYSGTQ---QFITSLPE----RYPELA 125

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           HL   +S+   ++  +   G   +    +   +      + +I + + +FF  +D   + 
Sbjct: 126 HLEIVESVISNAKNKVLGMGETVVKGSLASL-VSLATLGVYLILVPLLVFFLLKDKQEML 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +          K+   + + I +   G  +  I  G V    + +  +   V L 
Sbjct: 185 RMASGVLPR-NRKLATKVWEEMNQQISNYIRGKVLEIIIVGTVSYITFAILDLRYSVLLA 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V   +  +IP  GA      V+I  L + G       L +   I   +    L P L   
Sbjct: 244 VAVGLSVLIPYVGAAAVTVPVAIVALFQWGLTPQFYTLLIAYGIIQALDGNVLVPILFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            + L  +     ++      G  G+F    L  L+  +WK       E +  I
Sbjct: 304 AVNLHPVAIIIAVLVFGGLWGFWGVFFAIPLATLVKAVWKALPSLEDEPEASI 356


>gi|171464071|ref|YP_001798184.1| protein of unknown function UPF0118 [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193609|gb|ACB44570.1| protein of unknown function UPF0118 [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 329

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 54/315 (17%), Positives = 103/315 (32%), Gaps = 6/315 (1%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P L+A I+ +   P+   F   +   +   A ++ +  +CL    L  L      E+ 
Sbjct: 5   FTPFLTAFILAYALHPVCLWFEQHRLPRA-LAAAVSMLIGLCLVFFILSLLISLLKYEIP 63

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            + +++     +      WL      +  +  W                    + +    
Sbjct: 64  LIKAQLPDWIANTQ---AWLGPKLSELHINLDWGTLRESATQKITEHINDNADSLMSSTI 120

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                 G   +   ++ + +I  +F+   D       +  +           ++     +
Sbjct: 121 STVLMSGSSVIAGFVNAVLIIFVMFYLLMDWTYFFGLVKGIVPVRAQETVHHLAMHTDGL 180

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS--FTAVSIY 268
           +     GM I+     +   +     GV    ALG  TA+M +IP          A    
Sbjct: 181 LSQYLRGMLIVISIMAIFYSAGLSFIGVKGAAALGAFTALMIVIPYIGITIGLTLATLSA 240

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           LL  G       +F+   I  F+    L P LVG  I L  +   F L+   +  G  G+
Sbjct: 241 LLQFGPGTEIIGVFILFGIGQFLESFFLTPRLVGERIGLHPVAVLFSLLCFGKLFGFFGV 300

Query: 329 FIGPVLMALIAVIWK 343
            +   + A+  V+ K
Sbjct: 301 LLALPISAVSLVLVK 315


>gi|219668948|ref|YP_002459383.1| sporulation integral membrane protein YtvI [Desulfitobacterium
           hafniense DCB-2]
 gi|219539208|gb|ACL20947.1| sporulation integral membrane protein YtvI [Desulfitobacterium
           hafniense DCB-2]
          Length = 354

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 126/352 (35%), Gaps = 3/352 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIIL-VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M+E        +  +I FI++ +  Y+    FAP + AL+      P     +   + + 
Sbjct: 1   MKEFAKKVAVTLLVIIAFILIPLVAYYALPHFAPFIFALVFALLLEPFNQWLMKWPKINR 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
              A I+    +  F++   FL      E  EL+  +     +        +     +  
Sbjct: 61  PVAANISYFVFLGGFLLLAYFLITKITSEAYELIKFIQRNIPNIQFWFNDANQRINELIM 120

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                      Q++   +      N +                + ++++   IAL+    
Sbjct: 121 VLPPEMVAQINQTITGFANQLSSINLLSTWGAQTISITASIPIFFITLLIFFIALYMINL 180

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           +   ISQ+  S  +         +   +            +++    +V      +  + 
Sbjct: 181 NLHHISQRFFSYFKKESKPKAIAVLSDLRNATIGFLKAQVVLSTFTYIVSLGGLLILDMR 240

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             + L ++  I+ ++P  G         I L+  G+IF+   L L   I + ++ K + P
Sbjct: 241 YALVLALLIVIVDILPILGTGSVLVPWGIVLITLGDIFSGLGLILL-FIVITVLRKIIEP 299

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            ++G  I L  L T   +  G + MG+LG+F+ P+L+     + K  ++  +
Sbjct: 300 KILGERIGLGPLSTLISIWVGFKVMGVLGVFLAPLLIIFYKALVKAKVIQYR 351


>gi|116514279|ref|YP_813185.1| permease [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|116093594|gb|ABJ58747.1| Predicted permease [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
          Length = 377

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 86/247 (34%), Gaps = 7/247 (2%)

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
              L+ +  +   S       +L+  G     +  +  +       +     F +I   +
Sbjct: 127 LESLYDQLKAQYSSFINEILAYLQKQGWSTSGLVSYMQKGVGRVTGFLSDFFFGVIFAIY 186

Query: 177 FYRDGFSISQQ----LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
           F  DG  I+      L +L         K       +       G  I A   GL++  A
Sbjct: 187 FLYDGQRIAAYWKRNLGTLLNKKVIKGIKLFLADADRAFSGYIRGQIIDAFIVGLLVSLA 246

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
             +A VP  + +G++T +  +IP   PI    + I          A  + +   + +  +
Sbjct: 247 MLIAKVPYGLLIGLVTGLGNLIPYFGPILGYGMVILACTLSQNMTALIVGMIILLLIQAI 306

Query: 293 D-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           D   L P L+   I +  L     ++ G    G +G+ I   + AL+   ++  I   ++
Sbjct: 307 DGNILNPKLLSSAIHIHPLYVIACVIAGGAMGGFVGMLIAVPMGALLKTEFERLIAYRQK 366

Query: 352 NKEKISS 358
             EK   
Sbjct: 367 QLEKSKE 373


>gi|21910312|ref|NP_664580.1| hypothetical protein SpyM3_0776 [Streptococcus pyogenes MGAS315]
 gi|71910652|ref|YP_282202.1| hypothetical protein M5005_Spy_0839 [Streptococcus pyogenes
           MGAS5005]
 gi|21904508|gb|AAM79383.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
 gi|71853434|gb|AAZ51457.1| hypothetical membrane spanning protein [Streptococcus pyogenes
           MGAS5005]
          Length = 375

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 113/296 (38%), Gaps = 8/296 (2%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           I  +     F + + ++    + ++   +S +   +   I     ++++      +    
Sbjct: 80  ICLLLAYLTFFILITWIISIVIPDLITSISTLTKFDTITIQ--EVVNNLEHNKLLARTIQ 137

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL--DYCLSIIFMIIALFFFYRDGF 182
            ++     L      + +     F+    +    + +     +++    +   +      
Sbjct: 138 -YIGGDGKLTETIANYSQQLLKQFLTVLTNILTSVTVIASAIINLFISFVFSLYVLASKE 196

Query: 183 SISQQLDSLGEHLFPAYWKKI---SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            + +Q ++L +     Y K+I     ++ +     F+  T+ A+  G +  S  ++  +P
Sbjct: 197 DLCRQGNTLVDTYTGKYAKRIHYLLELLHQRFHGFFVSQTLEAMILGSLTASGMFILRLP 256

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               +GV+ A  A+IP        A+   L++  ++  A    ++  I   I    + P 
Sbjct: 257 FAGTIGVLVAFTALIPVIGASIGAAIGFILIMTQSMSQAIIFIIFLIILQQIEGNFIYPK 316

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +VGG I LP +     +  G    G++G+ I   L A +  + K++I   +  ++K
Sbjct: 317 VVGGSIGLPAMWVLMAITIGASLKGIVGMIIAVPLAATLYQVIKDNIQKRQAIQKK 372


>gi|289434213|ref|YP_003464085.1| hypothetical protein lse_0846 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170457|emb|CBH26997.1| membrane protein, putative [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 348

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 58/355 (16%), Positives = 119/355 (33%), Gaps = 25/355 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  +I + LY L+     +L   I  F    + +  + +       +
Sbjct: 5   EKLKENNTARRVLVFILIGIVLYLLRSMINLILLTFIFAFLVTRLENVILKRVRIPRKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V     V ++      + ++ +LV  +V    +  P    ++    G      
Sbjct: 65  VIVLYTLVALFLYVAIVHFLPILIDQISQLVDSLVKIYNN--PPDNAVAKWVVGFLKESN 122

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             K+L                 G+DFI    S  G + L + L++I  +    FF  +  
Sbjct: 123 IEKYLQ---------------TGVDFIIASLSGIGSVGLSFFLALILSL----FFSLEKE 163

Query: 183 SISQQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            ++              +K+     +              +IA+   ++   A +L   P
Sbjct: 164 RVTSFTGQFLTSKVGFIFKEAAFFGKKFVGTFGVVLEAQLMIALVNTIITTIALYLMDFP 223

Query: 240 SHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             ++L ++  ++ +IP    I     + +     G + +   + L   I   I    L P
Sbjct: 224 QLLSLSIMVFVLGLIPVAGVIISCVPLVLIAYSVGGLQDVFYILLTVVIVHAIETYILNP 283

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L+     LP   TF  L+      G+ GL +G  +   +  I        KE +
Sbjct: 284 KLMSSKTNLPVFYTFIVLIFSETFFGVWGLIVGIPVFVFLLDILDVRNAEDKEKR 338


>gi|145628556|ref|ZP_01784356.1| lipoprotein NlpI [Haemophilus influenzae 22.1-21]
 gi|145639850|ref|ZP_01795451.1| hypothetical protein CGSHiII_03585 [Haemophilus influenzae PittII]
 gi|144979026|gb|EDJ88712.1| lipoprotein NlpI [Haemophilus influenzae 22.1-21]
 gi|145271068|gb|EDK10984.1| hypothetical protein CGSHiII_03585 [Haemophilus influenzae PittII]
 gi|309750345|gb|ADO80329.1| Putative permease [Haemophilus influenzae R2866]
          Length = 349

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 53/341 (15%), Positives = 117/341 (34%), Gaps = 11/341 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             + +PQ +    I+    +S+YF     AP+L AL++ +      +      +      
Sbjct: 11  RRLSDPQAMGLLAILLFGFISIYFFGDLIAPLLIALVLSYLLEIPINFLNQYLKCPRMLA 70

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++   S + L  V  L L      +   L+S +            WL ++P        
Sbjct: 71  TILIFGSFIGLAAVFFLVLVPMLWNQTISLLSDLPAMFNKS---NEWLLNLPENYPELID 127

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           ++   S   S++     F ++     +        M  +   +    + + +FF  +D  
Sbjct: 128 YSMVDSIFNSVREKILGFGESAVKLSLASI-----MNLVSLGIYAFLVPLMMFFMLKDKS 182

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + Q +           +K + + + + I +   G  +  +   L+    + + G+   +
Sbjct: 183 ELLQGVSRFLPKNRNLAFK-VWKEMQQQISNYIHGKLLEILIVTLITYIIFLIFGLNYSL 241

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFL 300
            L     +  ++P  GA I    V++  L +  I       +       ++D   L P+L
Sbjct: 242 LLAFAVGLSVLVPYIGAVIVTIPVALVALFQFGISPTFWYIIIAFAVSQLLDGNLLVPYL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
               + L  L     ++      G  G+F    L  L+  +
Sbjct: 302 FSEAVNLHPLIIIISVLIFGGLWGFWGVFFAIPLATLVKAV 342


>gi|307687574|ref|ZP_07630020.1| hypothetical protein Ccel74_05413 [Clostridium cellulovorans 743B]
          Length = 383

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 46/341 (13%), Positives = 116/341 (34%), Gaps = 10/341 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA-----VIATVSV 70
           ++ ++      L  F      A I+        + F   +      L      + + +  
Sbjct: 31  VLGVLSYCYTLLLPFILGGCIAFILNIPMNYFSNKFSRVQGNKLGSLVRKGNKIFSLILS 90

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWASELWTKHLSH 129
             L +  ++ +    + ++ E   ++    ++  + V  W+ ++             +  
Sbjct: 91  FVLVLGVIILVLALVIPQIAETAKRLPTTFENASVIVKSWIENVDWLSNDIINKINVIEI 150

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             +           NG   +          FL+  ++    ++   +   D  ++S+Q  
Sbjct: 151 DWNSVFNEIKSSVFNGAGSMISSTIGVATSFLNGVVNFSLGLVFSIYLLLDKENLSKQCK 210

Query: 190 SLGEHLFPAYWK----KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            +     P        +I+ +  K   +   G  + A+  G +      +   P  + + 
Sbjct: 211 KILYAFLPKEKVVSILEIASLANKTFSNFLTGQCVEAVILGFLFFVTMSILHFPYAMVVS 270

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           V  A  A+IP         +  +L++  N   A    +   +   I    + P +VG  +
Sbjct: 271 VFIACTALIPVFGAFIGGGLGFFLIVMDNPTKALLFLVLFLVLQQIEGNLIYPRVVGNSV 330

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            LP +     +  G + MGL G+ I   L ++  V++++++
Sbjct: 331 GLPSMWVLVAITLGGKLMGLTGMLIFIPLCSVAYVLFRKAV 371


>gi|149181715|ref|ZP_01860207.1| hypothetical protein BSG1_18170 [Bacillus sp. SG-1]
 gi|148850563|gb|EDL64721.1| hypothetical protein BSG1_18170 [Bacillus sp. SG-1]
          Length = 331

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 56/316 (17%), Positives = 116/316 (36%), Gaps = 2/316 (0%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           +Y++     P+++A++      P       + +       +I  +  M    +   F+  
Sbjct: 2   IYYILPVSIPLITAIVTALLLDPAVKMLERRFKIKRKLAVLIVFIIFMLAIGLLSYFVIT 61

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             + E  +LV  +         +                          ++    +F  +
Sbjct: 62  KVVGEGVKLVEDMPAYINQLSDIWLSYEKQLTNAAKDLPIEIVTQTSNEVQDFLNSFKNS 121

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
                     S F     +Y +S +  +IALF F  D   I Q L S            +
Sbjct: 122 LRDYLDIEKISAFLAYIPNYLVSFLVYLIALFMFMLDLPRIKQTLFSHLTEKTAEKVNFM 181

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISF 262
           +  +  VI   F    +++I   +              V + +I  ++  IP  G+ +  
Sbjct: 182 TSRLSYVIFGFFKAQFLVSIIIFVTSLIGLLFIAPEVAVVMSIIIWVIDFIPLIGSIVVL 241

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++Y L+ GN+   T L +  A+ L I+ +T+ P ++G  I L  L T   +  G++ 
Sbjct: 242 FPWAMYHLLSGNLTLGTELAVLAAVLL-IIRRTVEPKVMGSHIGLSPLATLIAMYLGLKL 300

Query: 323 MGLLGLFIGPVLMALI 338
           +G+LG  +GP+++ + 
Sbjct: 301 LGVLGFILGPLILIIF 316


>gi|255975625|ref|ZP_05426211.1| membrane protein [Enterococcus faecalis T2]
 gi|257082332|ref|ZP_05576693.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|257416315|ref|ZP_05593309.1| membrane protein [Enterococcus faecalis AR01/DG]
 gi|307277837|ref|ZP_07558921.1| hypothetical protein HMPREF9515_00171 [Enterococcus faecalis
           TX0860]
 gi|255968497|gb|EET99119.1| membrane protein [Enterococcus faecalis T2]
 gi|256990362|gb|EEU77664.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|257158143|gb|EEU88103.1| membrane protein [Enterococcus faecalis ARO1/DG]
 gi|306505234|gb|EFM74420.1| hypothetical protein HMPREF9515_00171 [Enterococcus faecalis
           TX0860]
          Length = 366

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 56/344 (16%), Positives = 117/344 (34%), Gaps = 15/344 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKK---------EESSTFLAVIATVSVMCLFIVP 77
           L G  +P ++  +I +                      +       ++  + ++ +F++ 
Sbjct: 23  LLGILSPFITGFVIAYLLSGSQKKIEVLLERVPLPVVKKAKHGLSVLLLYLIILFIFVLT 82

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLKI 135
           L ++    +  + +L + +     H +     L D  I       +     L      + 
Sbjct: 83  LNYIVPLLISNLVDLANSLPTFYDHMVQFVMSLEDKGILKTAAIEKYLNSVLKDLSPERF 142

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           L++    T  +  +          FL+  L++I  I AL F       + +    L    
Sbjct: 143 LNQ---WTQALFSLGTLTKNVSSFFLNAFLTLIISIYALVFKQSILTFVEKAAHKLLSEK 199

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                +       K+         + A   G+       +  V   V LG++  I  MIP
Sbjct: 200 VYKQTQTWLNTTNKIFYKFISCQFLDACIIGVSSTILLSILNVKFAVTLGILLGICNMIP 259

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G+  +     +  L  G +  A  + L   I   I    + P ++G  + +  +    
Sbjct: 260 YFGSIFASIVAGVITLFTGGVTQAITVLLVLLILQQIDGNIIGPRIMGDALNVNPILIIV 319

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            +  G    G+LG+F+   + A+I +I  E +   KEN + + S
Sbjct: 320 SITIGGAYFGVLGMFLAVPVAAIIKIIVSEWLNESKENDKIVDS 363


>gi|239942580|ref|ZP_04694517.1| putative integral membrane protein [Streptomyces roseosporus NRRL
           15998]
 gi|239989041|ref|ZP_04709705.1| putative integral membrane protein [Streptomyces roseosporus NRRL
           11379]
 gi|291446042|ref|ZP_06585432.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
 gi|291348989|gb|EFE75893.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
          Length = 368

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 102/299 (34%), Gaps = 21/299 (7%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           P++   I+++    +  A +   +++ +       +    +    ++V+ +  A Q    
Sbjct: 58  PVHRWLIARRLNR-SLAAGLTCAALVAVVGGAGYIVVTALVDSGDQIVASLKDAGQ---- 112

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
              W+           L     +    L   ++  ++  G        S    +      
Sbjct: 113 ---WV--------VDHLEIAGATDVDDLADNAKGLVEKFGASAAGGLLSGI-SLIGSLVA 160

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           + +  ++  FFF RD         ++         + + R   + +     G T IA+ +
Sbjct: 161 TSVLALLLTFFFLRDSDRAVNLAHTVAPRGTGDLVEAMGRRAFEAVEGFMRGTTFIALID 220

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
            + +     +  VP  V LG +  + A IP        AV++ L+   +      L+  G
Sbjct: 221 AVCITVGLLILDVPGAVGLGALVFVGAYIPYLGAFLSGAVAV-LVALADRGFVIALWALG 279

Query: 286 AI--ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            +     +    L+P +    +++        L  G    GLLG+ +  P+  A   V+
Sbjct: 280 VVLAVQVLEGHVLQPMIQSRTVQMHPAMIMIALTAGASVAGLLGMLLAVPLCAAAFGVL 338


>gi|116513954|ref|YP_812860.1| permease [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|116093269|gb|ABJ58422.1| Predicted permease [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|325125615|gb|ADY84945.1| Hypothetical conserved protein [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 357

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 53/354 (14%), Positives = 115/354 (32%), Gaps = 27/354 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE-SSTFLAV 64
            N   + R  ++ +I+++LY+++     +L   I  +    +      K +  S   +  
Sbjct: 10  KNNIHLRRATVLVMIILALYYVRAMMNTILLTFIFTYLILHLVRFVQGKFKHVSDKLIVA 69

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  + ++ L    L +     + ++ ++   V+   Q                     W 
Sbjct: 70  LTYLLIVVLLYFALRYYVPVLVKQVTKMTKSVINYYQTNDVD----------------WL 113

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
               H    +    + +K++               F    +S +  ++  FF+  +   +
Sbjct: 114 MTQLHKHVSEKTISSQVKSSLTALTAAL-----KGFGSVTMSFVMALVLSFFYTIELKEM 168

Query: 185 SQQLDSLGEH----LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                S  +      F        R              +IAI    +      +  +P 
Sbjct: 169 QTFSQSFLKSDLFGWFFEDIAYFGRKFTNTFGVVLEAQFLIAICNTTLTIVCLAIMKMPQ 228

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             ALG++  I +++P  G  IS   +S+     G I +   + +  A+   +    L P 
Sbjct: 229 IFALGLMVFICSLVPVAGVIISLIPLSLVAYTVGGIQDVIYILIMIAVLHTLETYILNPK 288

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            +    +LP   TF  L+ G    G  GL +   +      I     +  K+ K
Sbjct: 289 FMSSKTELPIFYTFVALLFGEHFFGTWGLIVSVPIFTFFLDILGVKNINSKQEK 342


>gi|291457935|ref|ZP_06597325.1| membrane protein [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419479|gb|EFE93198.1| membrane protein [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 408

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 79/206 (38%), Gaps = 6/206 (2%)

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
            F+    S FG     +  S +F +I   +F  DG +I++        LF     ++  +
Sbjct: 189 GFLQGILSTFG-NVGSFLSSFVFALIFCIYFLLDGENIARYWGRAFRLLFGERIFRLLGV 247

Query: 207 V----PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS- 261
                 +       G  I A+   +++ +   L GV   + +G++T I  +IP   P+  
Sbjct: 248 FLSDADRAFSGYIRGQIIDAVIMMVLVSAVLALVGVKYALIIGILTGIGNLIPYTGPLVA 307

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           + +  +  L+ G+            +   +    + P L+   + +  L     L+ G  
Sbjct: 308 YGSTLLICLLYGDYRRLLIALPLLFVIQTLDGNIINPKLLSDSVNVHPLLVIASLLIGGA 367

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIM 347
             G LG+ I   + +L+ + +   + 
Sbjct: 368 AGGFLGMLIAVPVGSLLKIQFDRLLR 393


>gi|313638619|gb|EFS03751.1| membrane protein YdbI [Listeria seeligeri FSL S4-171]
          Length = 379

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 59/355 (16%), Positives = 119/355 (33%), Gaps = 25/355 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  +I V LY L+     +L   I  F    + +  + +       +
Sbjct: 36  EKLKENNTARRVLVFILIGVVLYLLRSMIDLILLTFIFAFLVTRLENVILKRVRIPRKLI 95

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V     V ++      + ++ +LV  +V    +  P    ++    G      
Sbjct: 96  VIVLYTLVALFLYVAIVHFLPILIDQISQLVDSLVKIYNN--PPDNAIAKWFVGFLKESN 153

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             K+L                 G+DFI    S  G + L + L++I  +    FF  +  
Sbjct: 154 IEKYLQ---------------TGVDFIIVSLSGIGSVGLSFFLALILSL----FFSLEKE 194

Query: 183 SISQQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            ++              +K+     +              +IA+   ++   A +L   P
Sbjct: 195 RVTSFTGQFLTSKVGFIFKEAAFFGKKFVGTFGVVLEAQLMIALVNTIITTIALYLMDFP 254

Query: 240 SHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             ++L ++  ++ +IP    I     + +     G + +   + L   I   I    L P
Sbjct: 255 QLLSLSIMVFVLGLIPVAGVIISCVPLVLIAYSVGGLQDVFYILLTVVIVHAIETYILNP 314

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L+     LP   TF  L+      G+ GL +G  +   +  I        KE +
Sbjct: 315 KLMSSKTNLPVFYTFIVLIFSETFFGVWGLIVGIPVFVFLLDILDVRNAEDKEKR 369


>gi|86159816|ref|YP_466601.1| hypothetical protein Adeh_3397 [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85776327|gb|ABC83164.1| protein of unknown function UPF0118 [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 412

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 80/210 (38%), Gaps = 1/210 (0%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +  F+       +     ++ + +   F   D   I +  +++    + A  +++   + 
Sbjct: 178 VVAFSRAILAGTVQTLFFVVLLFMLTAFISMDAPRILRWFETVVPSHWRADLRRLRTGID 237

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
             +     G   I +  G++      +  VP   ALG +  ++ ++P  G  +S   + +
Sbjct: 238 AGLSGVVRGQLTIMVVNGILTLVGLLVLKVPFAFALGFLAFVLYIVPIFGTILSSVPIVL 297

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
             L  G    A     W  +   +    L P ++G   ++  +     LV G R+ G++G
Sbjct: 298 LALTGGGPTKALLALGWITVVHALEAYVLNPKIMGDAARIHPVLIVLALVVGERSFGIVG 357

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKEKIS 357
             +   + +++  +++       E  E+ +
Sbjct: 358 ALLAVPVASVVVAVFRFLHRKQVELDERAA 387


>gi|307293285|ref|ZP_07573131.1| protein of unknown function UPF0118 [Sphingobium chlorophenolicum
           L-1]
 gi|306881351|gb|EFN12567.1| protein of unknown function UPF0118 [Sphingobium chlorophenolicum
           L-1]
          Length = 369

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 49/315 (15%), Positives = 113/315 (35%), Gaps = 13/315 (4%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           FF P+ +AL++     P       +   S    A+ A +  + +    L+ +        
Sbjct: 27  FFLPLTAALVVAIALVPFLEWMERRSVPSP-LAALTAVIVFLLVANTALVLIVVPAADWF 85

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           + L  ++     +  P+  + S +    +  E      + P +    +      + + F 
Sbjct: 86  RLLPERLPKIQNNLAPLIDFYSQL--QRFVDETVQMLATGPVAAAQTAAVDAPRSLLQFA 143

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW-KKISRIVP 208
              A           + ++F ++ ++FF      + ++  +  E    A    ++ + V 
Sbjct: 144 ATSAPS-------AIIQMVFALLIIYFFLAGWTKLRRRTINSRESFDGAMAVARVIQNVV 196

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI--SFTAVS 266
               +  L +  I +  GL +  A WL G+PS +  G I A++  +P   P+  +     
Sbjct: 197 DATSAYVLTIATINLCLGLAVAFALWLIGMPSPLMWGGIVALLNFVPYFGPMLAAALLGL 256

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
             L++  +++ A            +    + P ++G  + +  L     L       G  
Sbjct: 257 GGLMVFDDVWKALLPAALQIGFHLVEANFVTPTILGRRLTMNPLLILVSLTFWGWVWGTP 316

Query: 327 GLFIGPVLMALIAVI 341
           G  +G  L+ +I  +
Sbjct: 317 GALLGVPLLIIIQTV 331


>gi|154687049|ref|YP_001422210.1| YtvI [Bacillus amyloliquefaciens FZB42]
 gi|154352900|gb|ABS74979.1| YtvI [Bacillus amyloliquefaciens FZB42]
          Length = 371

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 77/197 (39%), Gaps = 2/197 (1%)

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +     ++     +     IF ++A FF  +D   +   L S+      A  K +S 
Sbjct: 158 LSHLLELVPKWIAFLPNTAAVFIFAMLATFFMTKDWHKLKALLYSILPERVSANAKAVSG 217

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTA 264
            + K +        ++ +   +++    +L G+     +     ++ ++P  GA   F  
Sbjct: 218 ELKKAMAGFIKAQAVLILFTMIIVFIGLFLLGIEHAATIAFFIGLVDLLPYLGAGSVFVP 277

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             +YL I G +  A  L +   I + I  +   P ++   I L  L T   L  G +  G
Sbjct: 278 WIMYLAIAGQLPQAIGLGVLY-IVVLIQRQLTEPKILSKSIGLDPLATLIALFAGFKLFG 336

Query: 325 LLGLFIGPVLMALIAVI 341
           +LGL  GP L+  I   
Sbjct: 337 ILGLAAGPALLVFIQAF 353


>gi|324990430|gb|EGC22368.1| permease [Streptococcus sanguinis SK353]
          Length = 322

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 54/325 (16%), Positives = 110/325 (33%), Gaps = 7/325 (2%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           ++   +I F              +      +   ++++ +F+  +L +    +L +  L 
Sbjct: 1   MIYGAVIAFVLNVPMKKIEQYLVKLKVKAELRRPIAMVLVFLALILIVIALLVLVLPTLA 60

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             +         V   L  + G           LS   S      + +    I F+    
Sbjct: 61  QTISQLGTVLSTVLTQLGKLLGSSEFVT--KDMLSTIVSGIQGQSSSISQALIGFLSGLT 118

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY----WKKISRIVPK 209
           S  G       ++   +I+  F F      ++     L +   P         I ++  +
Sbjct: 119 SNIG-NIFSSLMNAFLIIVFTFSFLSSKEHLAAMTSRLLKVFLPEKVVIKLTYIGQVALE 177

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
                 +   I A+  G+++   Y + G+P  V  G+   +++ IP   P+    V    
Sbjct: 178 TYDQFLMSQLIEAVIIGVMIAVGYSVFGIPYGVMTGIFAGVLSFIPYVGPMIACVVGAIF 237

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           +   +   A    L   +   I    + P +VG  I LP + T      G    GLLG+ 
Sbjct: 238 IFTVSPTQALLSLLLYQVIQLIEGNLIYPRVVGQSIGLPAIFTLAAASIGGNLFGLLGMI 297

Query: 330 IGPVLMALIAVIWKESIMAIKENKE 354
               + A+I  + KE ++A +   +
Sbjct: 298 FFTPIFAVIYRLVKEFVVAKENQLD 322


>gi|16331491|ref|NP_442219.1| hypothetical protein sll0060 [Synechocystis sp. PCC 6803]
 gi|8928468|sp|Q55153|Y060_SYNY3 RecName: Full=UPF0118 membrane protein sll0060
 gi|1001147|dbj|BAA10289.1| sll0060 [Synechocystis sp. PCC 6803]
          Length = 344

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 52/320 (16%), Positives = 112/320 (35%), Gaps = 16/320 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L+ F    L A I+G+   P+             +   +  ++   +  V  L +    +
Sbjct: 41  LRIFIIANLVAFILGY---PV-RWLQRYPRLKLPYAVALVLLTTAIILAVIGLLVIPKLV 96

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            +++ ++  +   N  G      L ++      S  W    +     + LS  F   N I
Sbjct: 97  DQIRTVLQLLPHLNALGDRHLESLDNL------SNQWEIPTNFRAWGRELSNEF--PNQI 148

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             I        +      +   F+ I   +    G +    +          +  K+ + 
Sbjct: 149 RSITNQLINLLIWTAGSLVEAGFIFIMTVYLLLRGQTFWDGIFRWLPI---DWRHKVRQR 205

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           +    ++ ++G   +A   G+ L  +  +  VP  +  G+    MA  P G   S   +S
Sbjct: 206 LRHSFQNYYIGQATVAALLGVSLIISLSIFQVPLALLFGMFVGFMAFFPFGGGTSIVLIS 265

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           I    + +I+    +     +   +V+  L P L+G    +  +     L+ G +  GLL
Sbjct: 266 IIASFQ-SIWLGIKVLAIATVVDQVVENGLAPKLLGRVTGVHPVWILLSLMIGAKVAGLL 324

Query: 327 GLFIGPVLMALIAVIWKESI 346
           G+ +   + + I  +  + I
Sbjct: 325 GILVAIPIASFIRDMLNDFI 344


>gi|169824238|ref|YP_001691849.1| putative permease [Finegoldia magna ATCC 29328]
 gi|167831043|dbj|BAG07959.1| putative permease [Finegoldia magna ATCC 29328]
          Length = 381

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 110/333 (33%), Gaps = 6/333 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +  F      A ++      I +  + K          I+ +  + +    L F+    
Sbjct: 44  IISPFIIGAALAFVLNMPMNFIENKLLKKWTSKPGLKRAISLLISLVIVSAILTFVVTLI 103

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +    E +  ++      +   R   +I          T  ++    L +  + +L  NG
Sbjct: 104 IPNFLEAIKSLIQGIPVLVEKLRKYPEI-AKQLDKIYDTYAITSTHDLFVKLKPYLTKNG 162

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +D +         +F      ++    A++  +    ++ +Q   L    F     K   
Sbjct: 163 LDILNNVFFGISTVFSVVLSFVVSFTFAIYLLFSK-ETLRRQFTELTYVFFGGKTAKRII 221

Query: 206 IVPKV----IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +  KV      S F G  I A   G +     +L  +P+   + V+    A+IP    I 
Sbjct: 222 VFFKVAYEKFYSFFKGQFIEAFMLGFMCFIGMYLLKMPNAATVSVLIGFGALIPLVGAIL 281

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
             A+   +++  +   A    ++  +          P +VG  + LP +     +  G  
Sbjct: 282 GAALGALIILIESFSKAIMFVIFIIVLQQFDGNVTYPRIVGSSVGLPSIWVLVAVTIGAA 341

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             G++G+ I   + A I  +         E+K 
Sbjct: 342 VSGIVGMLIFVPIFATIYELLYRYKKKKLEDKN 374


>gi|118581304|ref|YP_902554.1| hypothetical protein Ppro_2899 [Pelobacter propionicus DSM 2379]
 gi|118504014|gb|ABL00497.1| protein of unknown function UPF0118 [Pelobacter propionicus DSM
           2379]
          Length = 344

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 47/342 (13%), Positives = 112/342 (32%), Gaps = 11/342 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +++ +I  + Y L+   +  L + +I +   P+      +            T 
Sbjct: 8   KLIAVILLLCLIAAAGYALQHTISCFLLSWVIAYLLDPLVMRIEKRTLRR--------TR 59

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +++ L+ +  +   ++  + + +L        +      + +  I    W   L  ++ S
Sbjct: 60  ALVLLYAILGILSIFFMAIMVPKLTMGWDSFVEDLPLYIQKIKQI-ALEWKIRLPDRYGS 118

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 I   +    +           FG        +I+   I +FF      ++   L
Sbjct: 119 DEIQWLIDKVSNNIDSAAQKAGVMVYSFGSRIFFNIFNIVLSPILVFFMLYYKQTVIDTL 178

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S       A    I   V + I     G  I++I   L+   A  +  +   +  G+  
Sbjct: 179 KSWLPEERKAVIIDIGLEVNRSIGGYLRGQVIVSIIVALLSTVALLVLDIAHPIFCGIFA 238

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATC--LFLWGAIELFIVDKTLRPFLVGGPIK 306
              +++P    +  T  +++         A         A+  F+    ++P +    + 
Sbjct: 239 GAASVLPFIGVLIATLPALFFAWYQYQSIAILSQTGFAFALIYFLEGYIIKPLIFKESMN 298

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L  L T   ++     +G  G+ +   + A I + W   +  
Sbjct: 299 LNPLMTIVMVMALGELLGFWGIMLALPIAAAIKITWGHYLRG 340


>gi|224538326|ref|ZP_03678865.1| hypothetical protein BACCELL_03217 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520048|gb|EEF89153.1| hypothetical protein BACCELL_03217 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 376

 Score = 76.4 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 126/365 (34%), Gaps = 21/365 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFL----KGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M    +     +R +I+  I++ +  L     G   P   A +I +  +P+ S F  K  
Sbjct: 1   MERKKITFDSFIRAVILGAIIIGVLMLLKRLSGVLLPFFLAWLIAYLIYPLVSFFQHKLR 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE----MKELVSKVVLANQHGIPVPRWLSD 112
             +  +++   +  + +      +L    M++    +K+L+ +          VP  LS+
Sbjct: 61  LKNRIISIFCALFTLSVIGSVAFYLLVPPMIQEFLRVKDLLIEYFSTTHTASNVPTTLSE 120

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
                    +  +  S    L  L  T  K      +    S    +   +    + ++ 
Sbjct: 121 FIRQNIDLHILEQMFSQENILDALKVTVPK------LWSLISESINLLFGFFTVFLILLY 174

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
            +F    D  SIS+    L    +      I   V   +   F G  ++A+  G++    
Sbjct: 175 IVFILL-DYESISEGWAHLMPKKYRKTVTGILNDVKDGMNRYFRGQALVALCVGILFSIG 233

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI----KGNIFNATC--LFLWGA 286
           + +   P  + LG+    + M+P    I F    +  ++     G+ F            
Sbjct: 234 FLIIDFPLAIGLGLFIGALNMVPYLQIIGFVPTIMLAILKAADTGDNFWIIIASATAVFI 293

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           +   I D  L P ++G    L        L      MG+LG+ I   L  L+   ++  I
Sbjct: 294 VVQIIQDGYLVPRIMGKITGLNPAIILLSLSIWGSLMGMLGMIIALPLTTLMLSYYQRYI 353

Query: 347 MAIKE 351
           +  + 
Sbjct: 354 INQEN 358


>gi|254520082|ref|ZP_05132138.1| permease [Clostridium sp. 7_2_43FAA]
 gi|226913831|gb|EEH99032.1| permease [Clostridium sp. 7_2_43FAA]
          Length = 378

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 54/338 (15%), Positives = 113/338 (33%), Gaps = 12/338 (3%)

Query: 26  FLKGFFAPVLSALIIGF--------TSWPIYSSFISKKEESSTFLAVIAT-VSVMCLFIV 76
            L  F      A ++            + +     S        L+++ T ++V+ L I 
Sbjct: 41  ILSPFIIAFAMAFVLNLPMKFFEKNVFYFLDKEKSSFVRGLKRPLSILTTFITVIGLIIA 100

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             LF+    +  +  L+  V    +    +               L+   +S  + L   
Sbjct: 101 LALFVIPQLVSSVSTLLDTVPEYIKSFEALINEFVS--STEILQNLYNTLMSTWKELLQF 158

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               L T+    +           +++ LSI+  I  L       +   + L +  +   
Sbjct: 159 FGGLLTTSLTGILNT-TMNITSGVVNFVLSIVLTIYMLASKETLIYHFKKILYAFSKKSI 217

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                +I R+          G  I A+  G +      +  +P  + + V+  + A+IP 
Sbjct: 218 ADKIIEIGRLANVTFAKFITGQCIEAVILGALCFVGMNIFSMPYSLLISVLIGVTALIPV 277

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
                 T  +++L++  N   A    ++           + P +VG  + L  +     +
Sbjct: 278 FGAFIGTIPAVFLILIINPIQALWFIVFILCLQQFEGNIIYPKVVGNSVGLSAIWVMLAM 337

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           + G  T+GL+G+ IG    ++   + KE       NK 
Sbjct: 338 LVGGSTLGLIGMLIGIPTFSVAYQLIKEYTNKRLINKN 375


>gi|94990464|ref|YP_598564.1| hypothetical protein MGAS10270_Spy0955 [Streptococcus pyogenes
           MGAS10270]
 gi|94543972|gb|ABF34020.1| hypothetical membrane spanning protein [Streptococcus pyogenes
           MGAS10270]
          Length = 382

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 113/296 (38%), Gaps = 8/296 (2%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           I  +     F + + ++    + ++   +S +   +   I     ++++      +    
Sbjct: 87  ICLLLAYLTFFILITWIISIVIPDLITSISTLTKFDTITIQ--EVVNNLEHNKLLARTIQ 144

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL--DYCLSIIFMIIALFFFYRDGF 182
            ++     L      + +     F+    +    + +     +++    +   +      
Sbjct: 145 -YIGGDGKLTETIANYSQQLLKQFLTVLTNILTSVTVIASAIINLFISFVFSLYVLASKE 203

Query: 183 SISQQLDSLGEHLFPAYWKKI---SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            + +Q ++L +     Y K+I     ++ +     F+  T+ A+  G +  S  ++  +P
Sbjct: 204 DLCRQGNTLVDTYTGKYAKRIHYLLELLHQRFHGFFVSQTLEAMILGSLTASGMFILRLP 263

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               +GV+ A  A+IP        A+   L++  ++  A    ++  I   I    + P 
Sbjct: 264 FAGTIGVLVAFTALIPVIGASIGAAIGFILIMTQSMSQAIIFIIFLIILQQIEGNFIYPK 323

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +VGG I LP +     +  G    G++G+ I   L A +  + K++I   +  ++K
Sbjct: 324 VVGGSIGLPAMWVLMAITIGASLKGIVGMIIAVPLAATLYQVIKDNIQKRQAIQKK 379


>gi|157375572|ref|YP_001474172.1| hypothetical protein Ssed_2435 [Shewanella sediminis HAW-EB3]
 gi|157317946|gb|ABV37044.1| protein of unknown function UPF0118 [Shewanella sediminis HAW-EB3]
          Length = 361

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 47/304 (15%), Positives = 104/304 (34%), Gaps = 14/304 (4%)

Query: 45  WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
           WP+      K   + T  A    V  +   ++    L      +   L++ +      G+
Sbjct: 54  WPVAQMI--KVGMNRTTAASAVLVLFIGTMLLITFGLVPSIWKQGLALITDLPTMLDKGL 111

Query: 105 PVPR-WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY 163
              + +++  P  +   +L         ++    +  L T  +  I +    +    L  
Sbjct: 112 HTAQSYVNQYPQFVNPDQL--------DTMVGELKKMLDTQHLLDIGKQIIGYSASLLVL 163

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
            +  I + + +FFF +D   + +              +K+   + + I +   G  I  I
Sbjct: 164 MVYAILVPLLVFFFLKDKDELIKGSKRFIPT-NRELARKVWYEMHQQIFNYIRGKVIEII 222

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLF 282
             G V    + +  +     LGV+T +  +IP  GA +    +++    +  I       
Sbjct: 223 IIGGVSYVFFAIMDLRYAALLGVLTGLSVLIPYVGATLVTLPIALVAFFQWGISPEFGYL 282

Query: 283 LWGAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           + G   +  +D   L P L    + L  +     ++      G+ G+F    L +L+  +
Sbjct: 283 MLGYGIIQALDGNLLVPILFSDAVDLHPVFIIAAVLIFGGLWGVWGVFFAIPLASLVKAV 342

Query: 342 WKES 345
               
Sbjct: 343 LNAW 346


>gi|295101910|emb|CBK99455.1| Predicted permease [Faecalibacterium prausnitzii L2-6]
          Length = 426

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 47/350 (13%), Positives = 118/350 (33%), Gaps = 21/350 (6%)

Query: 27  LKGFFAPVLSALIIGFTSWP--------IYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           + G   P +   +I +   P        ++  F  K    +  LA+ AT+    L +  L
Sbjct: 45  VTGILMPFIYGAVIAYLLKPVCNTIEGFLHRIFPEKLHSMANMLAIAATLLFGVLVVYAL 104

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + +    +  +  + S    A        +W++        +E    + +    + + + 
Sbjct: 105 VMMVVPQL--ITSVTSLYYTAQTSITRFMQWVNT-QEVFLDNETLMGYFNDAYDVIVNNL 161

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCL------SIIFMIIALFFFYRDGFSISQQLDSLG 192
           T L+T  +  +         + +          +++  +I   +        ++Q   + 
Sbjct: 162 TALRTTLLPSLQNIQGILSGVGVGVMNVVTWFKNLLIGLIVAVYLLASRKKFAKQAKMIL 221

Query: 193 EHLFPAYWKKISRI----VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +   +W ++ +       K+      G  + +   G++   A  +   PS + + VI 
Sbjct: 222 YSVVKPHWAQLIQEEVLYADKMFGGFINGKIMDSAIIGVLCYFACIIFKFPSALLVSVII 281

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            +  +IP   P      +  L++  +   A    L+  +   +    + P ++G    L 
Sbjct: 282 GVTNVIPFFGPFIGAVPATLLILIQSPIKALWFVLFVLVLQQLDGNVIGPKILGNTTGLS 341

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                F ++      G  G+  G  L A+I  + K+ +        ++  
Sbjct: 342 SFWVLFSILLFGGLWGFAGMIAGVPLFAVIYDVIKKLVFHGLRRNGQLDQ 391


>gi|260584496|ref|ZP_05852243.1| membrane protein [Granulicatella elegans ATCC 700633]
 gi|260158014|gb|EEW93083.1| membrane protein [Granulicatella elegans ATCC 700633]
          Length = 365

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 48/326 (14%), Positives = 120/326 (36%), Gaps = 9/326 (2%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
            +P++  L++ F           + ++     ++  +++++ +  + +  +     + + 
Sbjct: 39  MSPIVLGLLMAFIFNVPMKHMEKQLKKIKVPPSLRRSIAILGVLFIFIAIVVAISWIIVP 98

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L   VV   +    +  +  +       +  W +     +    ++++ + ++ + F+ 
Sbjct: 99  TLARTVVQLGESFNYLMDFCVNW----IQNSGWLQAADVERITGFINQSNIVSSVVSFLG 154

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
            F S           +I+  +  +         +   +  L + + P    K+ + + K+
Sbjct: 155 GFTSNI-TGIFSNVFTILMAVFLMLNILGSKEQLQYLITRLLKVILPENRYKLLQYIGKI 213

Query: 211 IRST----FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
              T     +G  I A+  G ++   Y +  +P     GV+  +++ IP   P S   + 
Sbjct: 214 TLDTYDKFLMGQLIEAMIIGSLVFVTYSVFQLPYAAITGVLAGVLSFIPYIGPFSACMLG 273

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
              +   +   A            I    + P +VG  I LP + T    + G    G+L
Sbjct: 274 AIFIFTVSPIQALISIGVFYGLQLIEGNFIYPRVVGNSIGLPTVLTLAAALIGGNLFGIL 333

Query: 327 GLFIGPVLMALIAVIWKESIMAIKEN 352
           GL     L A+I  + KE ++  +E 
Sbjct: 334 GLIFFTPLCAVIYHLVKELVIKREET 359


>gi|104774189|ref|YP_619169.1| hypothetical protein Ldb1304 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103423270|emb|CAI98105.1| Conserved hypothetical membrane protein [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
          Length = 377

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 86/247 (34%), Gaps = 7/247 (2%)

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
              L+ +  +   S       +L+  G     +  +  +       +     F +I   +
Sbjct: 127 LESLYDQLKAQYSSFINEILAYLQKQGWSTSGLVSYMQKGVGRVTGFLSDFFFGVIFAIY 186

Query: 177 FYRDGFSISQQ----LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
           F  DG  I+      L +L         K       +       G  I A   GL++  A
Sbjct: 187 FLYDGQRIAAYWKRNLGTLLNKKVIKGIKLFLADADRSFSGYIRGQIIDAFIVGLLVSLA 246

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
             +A VP  + +G++T +  +IP   PI    + I          A  + +   + +  +
Sbjct: 247 MLIAKVPYGLLIGLVTGLGNLIPYFGPILGYGMVILACTLSQNMTALIVGMIILLLIQAI 306

Query: 293 D-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           D   L P L+   I +  L     ++ G    G +G+ I   + AL+   ++  I   ++
Sbjct: 307 DGNILNPKLLSSAIHIHPLYVIACVIAGGAMGGFVGMLIAVPMGALLKTEFERLIAYRQK 366

Query: 352 NKEKISS 358
             EK   
Sbjct: 367 QLEKSKE 373


>gi|311898722|dbj|BAJ31130.1| hypothetical protein KSE_53550 [Kitasatospora setae KM-6054]
          Length = 463

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 43/357 (12%), Positives = 114/357 (31%), Gaps = 21/357 (5%)

Query: 8   PQGIMRWMIMFIILVSLYFLKG--------FFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           P+ + R +++ ++ V L+ L           F  +L A  +     P      ++     
Sbjct: 69  PRWLPRAILLALLGVGLFQLADWAFHQLIDLFVMLLVAFFLSLAMEPAVDRMAAR-GVRR 127

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
                +  + V       L  L    + ++ ++  ++    Q  I    W++       +
Sbjct: 128 GLGTFLVFIGVGLAVAGFLAALGTLLVDQITQIAGRLPQLLQDLI---NWINHTFHTDLS 184

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            +     +          E + +    +      +  G +F  + + +       F+F  
Sbjct: 185 LDQLQHQVLKDSG---TIEKYAQQAADNVWGVTGTVVGGLFQAFTVGLF-----TFYFTA 236

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           +G  + + + SL          +   I             ++A+       + +   G+P
Sbjct: 237 EGPRVRRTVCSLLPPSKQGEVLRAWEIALAKTGGYLYSRALLALVSTFAHWAFFAAIGLP 296

Query: 240 SHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              AL V   +M+  +P        A+ + + +     +A  + ++  +   I +  L P
Sbjct: 297 YAAALAVWVGVMSQFVPTIGTYLAGALPVLVGLTVRPVDALWVLVFVTVYQQIENYLLHP 356

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            +    + +     F  ++ G   +G +G  I   + A +       +   +   + 
Sbjct: 357 RITARTVDVHPAVAFGSVIAGAALLGAVGALIAIPVAATLQGFVGTYVRRYEVEDDP 413


>gi|260424640|ref|ZP_05778952.1| putative permease [Dialister invisus DSM 15470]
 gi|260402661|gb|EEW96208.1| putative permease [Dialister invisus DSM 15470]
          Length = 351

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 85/196 (43%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           + +F+      F    + +I +    F+  + G + S +   L    + A+ K + + + 
Sbjct: 145 LAQFSLSAIFSFASTVIELIVVPFITFYMMKKGRTFSNKFAELFPERYHAHIKNLFKEIH 204

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
            V+++   G  ++++    ++    W+  +P  + +G++  ++ M+P   PI      I 
Sbjct: 205 FVLKAYIHGQLLLSVLMAFLVFIGMWIMDIPYPLVIGLLAGVVEMVPIIGPIIGAVPPIL 264

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L +         + ++  +   +    + P L+G  I++  +    G++ G    G+LG+
Sbjct: 265 LGLLQGSSVMIQVIIFYVVVQQLDSHFIMPKLMGSIIEVHPVAIIAGVLIGGSLKGILGM 324

Query: 329 FIGPVLMALIAVIWKE 344
            I    +A++ ++ + 
Sbjct: 325 MIAVPAVAVLQILLRH 340


>gi|148273920|ref|YP_001223481.1| AI-E2 family membrane protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147831850|emb|CAN02820.1| conserved membrane protein, AI-E2 family [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 377

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 54/334 (16%), Positives = 115/334 (34%), Gaps = 17/334 (5%)

Query: 14  WMIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +I   +  +++ L   K    P L  L+I     P+ ++   ++     ++A+ +T+  
Sbjct: 41  LVIGIAVAAAVWILIAVKEVVIPFLIGLLICALLEPLVAALRKRRW--PAWVAITSTLLG 98

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             + I  L+ L    +      + +   A +    V   L+  P  +  S+      S  
Sbjct: 99  TAVVISGLVLLLITQIRTGIPTLQR--EAMERFESVRDLLAQPPFNVVPSDYDALLASAG 156

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           ++L+   E  L           A   G+         +     +     DG  I + + S
Sbjct: 157 KALENSREALL---------TGALDAGLGVGHLVTGALLAFFTIVIVLIDGRGIWRFVVS 207

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +             R     + +       +A G  + +G A WL G+P  + + V+  +
Sbjct: 208 VFPRRARPAIDGAGRAGWGTLSAFTRVQIFVAAGNAVGIGIAAWLLGLPLAIPIAVLVFL 267

Query: 251 MAMIPGGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            + IP    I   A + +  L+      A  +         +    L+P ++GG + +  
Sbjct: 268 ASFIPVVGAIVSGAFAVVIALVFVGPLQAVIMLAAVIGVHLLESHVLQPLVMGGAVHVHP 327

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L     +  G    G+ G       +A + V+ +
Sbjct: 328 LAVVLSVAAGSYVGGVAGALFAVPFVATVNVMVR 361


>gi|332178271|gb|AEE13960.1| protein of unknown function UPF0118 [Thermodesulfobium narugense
           DSM 14796]
          Length = 361

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/318 (11%), Positives = 113/318 (35%), Gaps = 1/318 (0%)

Query: 41  GFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN 100
            +   P++ + + + +++     +++ + +        + L +    E++ +   + +  
Sbjct: 45  AYLIEPLFKTIL-RFQKNRVISLILSYIIIFVFLGSIGIVLIFGLSNELRSIARHLPIYF 103

Query: 101 QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIF 160
           ++       L                 +     +   +T   +       +    F M  
Sbjct: 104 ENIKNYLDSLQKFLNSFSIPIDIRSSFNGIFLSQEYIQTHPYSLSFSESAKVLKTFFMES 163

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
           +   +++  + +   F+  D  +I   L +L          ++S  +  V++    G  +
Sbjct: 164 VRIGVNVFIVFMVAAFWIIDFENIKNGLLTLFPPDKRQEIIELSTDIDFVLKRIVRGQFL 223

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC 280
           I +  G +   A  +  +   + +GV+   +++IP    +S T  ++ L +  +   +  
Sbjct: 224 ICLINGALTTLALVVLKIQYAILIGVLAGCLSVIPVFGTLSTTLPAVLLGLTQSWIVSLE 283

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           + +      +     L P ++G   ++  +     LV G +  G+ GL +      ++  
Sbjct: 284 VVIVILCIHWFESYVLSPKIMGKQAQVHPILIILALVSGEQLFGVEGLILAIPATGVLKA 343

Query: 341 IWKESIMAIKENKEKISS 358
           +    +      +++ +S
Sbjct: 344 VVMHYLKKAGHLEQEKNS 361


>gi|325845401|ref|ZP_08168697.1| putative membrane protein [Turicibacter sp. HGF1]
 gi|325488570|gb|EGC90983.1| putative membrane protein [Turicibacter sp. HGF1]
          Length = 382

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 47/330 (14%), Positives = 114/330 (34%), Gaps = 10/330 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS------KKEESSTFLAVIATVSVMC 72
           +I+ ++        PV+ A  I +  W              KK       +  +    + 
Sbjct: 36  LIIAAIKEFMAVITPVIIAFAIAYILWKPTVFVEKNLQKMTKKLMKRDLSSGASRGISLL 95

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           + +  ++ L       +   +   +      IP      +      +  + +       +
Sbjct: 96  IVVSLVVMLILLLFNTIIPPIITNLKLLVDSIPALHQTFNKYIDDISPYIQSFITEEQIN 155

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
               + T L +     I +F +        + +S++  II   +F +D  ++++ +   G
Sbjct: 156 EITRAITNLLSYIATQILQFGTGMITNMTGFIISVLTTIILSIYFLKDKETLTRSVYKAG 215

Query: 193 EHLFPAYW----KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           + L         ++  + +  V     +   I AI  G++        G P  + +G++T
Sbjct: 216 QTLLTPNGLKRSQQFLKDLDAVFGGFLIAQLIAAILAGILSSLILIAIGHPFALLVGLVT 275

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            +  +IP   PI    +   L +  ++  A    +   I   +    ++P L+   + L 
Sbjct: 276 GVANVIPYVGPILGAVLGGLLGLFSSLKMAILSLVLLTIYQQLDANVIQPKLLSNSVGLN 335

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
            +     ++ G   +G+LG+ +     AL 
Sbjct: 336 PVWVLIAILIGGHYLGMLGMIVSIPSAALF 365


>gi|281418098|ref|ZP_06249118.1| protein of unknown function UPF0118 [Clostridium thermocellum JW20]
 gi|281409500|gb|EFB39758.1| protein of unknown function UPF0118 [Clostridium thermocellum JW20]
 gi|316939860|gb|ADU73894.1| protein of unknown function UPF0118 [Clostridium thermocellum DSM
           1313]
          Length = 372

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 44/342 (12%), Positives = 115/342 (33%), Gaps = 17/342 (4%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS------TFLAVIATVS 69
           IM  +   +   K FF  +  A ++      +      +  ++            +  + 
Sbjct: 29  IMRAVWKFIVLFKPFFMGIAVAFVLNRPCMAVERFLNKRLFKNRLKVLVRGIAITVTYLV 88

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ L  + + F+    +  ++  +S +     +   +   LS++ G           LS 
Sbjct: 89  VLLLITLIISFIIPELIKSIQVFLSNMGAYIDNFRDLTNELSELLGLERID------LSS 142

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              L +     L ++  + +P+  S      L +  +++  ++   +       +  Q  
Sbjct: 143 LDKLILEYTNRLGSSLTELMPKIIS-ITTGVLSFFATLVITVVFSIYILAGKERLIGQCK 201

Query: 190 SLGEHLFPA----YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            +     P         + R+V  V      G    A   G +      +      + + 
Sbjct: 202 KVFSTYLPECLYKKGAYVYRVVVDVFNKYIYGQLAEAFILGSLCFIGMVIFRFEYALLIS 261

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           V+ A+ A++P          +  LL+  +   A    ++  +   + +  + P +VG  +
Sbjct: 262 VLIAVTALVPYFGAYIGGFCAFMLLLMISPTKAIWFLVYLVVLQQLENNLIYPRVVGSSL 321

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            LP +      + G    G +G+  G  +  ++  + +  ++
Sbjct: 322 GLPGIWVVLAAIVGAGVGGPIGVLTGVPIATVLFTLLRNDVL 363


>gi|46907647|ref|YP_014036.1| hypothetical protein LMOf2365_1438 [Listeria monocytogenes str. 4b
           F2365]
 gi|226224020|ref|YP_002758127.1| hypothetical protein Lm4b_01428 [Listeria monocytogenes Clip81459]
 gi|254824521|ref|ZP_05229522.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|254829822|ref|ZP_05234477.1| hypothetical protein Lmon1_00635 [Listeria monocytogenes 10403S]
 gi|254852537|ref|ZP_05241885.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|254932604|ref|ZP_05265963.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|255521340|ref|ZP_05388577.1| hypothetical protein LmonocFSL_08960 [Listeria monocytogenes FSL
           J1-175]
 gi|300765772|ref|ZP_07075748.1| hypothetical protein LMHG_11889 [Listeria monocytogenes FSL N1-017]
 gi|46880915|gb|AAT04213.1| putative membrane protein [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|225876482|emb|CAS05191.1| unnamed protein product [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|258605846|gb|EEW18454.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|293584163|gb|EFF96195.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|293593760|gb|EFG01521.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|300513547|gb|EFK40618.1| hypothetical protein LMHG_11889 [Listeria monocytogenes FSL N1-017]
 gi|328465467|gb|EGF36696.1| hypothetical protein LM1816_05950 [Listeria monocytogenes 1816]
 gi|328475017|gb|EGF45809.1| hypothetical protein LM220_07922 [Listeria monocytogenes 220]
          Length = 345

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 53/361 (14%), Positives = 116/361 (32%), Gaps = 26/361 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
            + L  + + R  +  +I   LY L+     +L   I  +    + +  + +       +
Sbjct: 5   SSFLQNRSVRRVGVFILIAFVLYLLRSQMNIILLTFIFSYLITRLENFILRRISIYRQII 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++  V +  + I   +        ++ +LV                             
Sbjct: 65  VLLLYVLIAAVIIFVFVKYIPVLADQINQLVKFGNTFLTT-------------------- 104

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
              +      +  L+  F      +        +        +++   ++   FF     
Sbjct: 105 -DSNNDFINYIVSLANQFDIMKYTEQGVSMILTYLTNVGTVLMNVFIALMLSLFFSLGKE 163

Query: 183 SISQQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            +    +          +++                    IIA+   ++   A W+ G P
Sbjct: 164 HLVSFTNQFSTSKIGFIYEEVKFFGSKFVATFGKVIEAQFIIALVNAILTTIALWILGFP 223

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             + L ++  ++ +IP  G  IS   ++I     G +     + +   I   +    L P
Sbjct: 224 QLMTLSIMVFLLGLIPVAGVIISLVPLTIIGYSIGGVEYIFYILVVVIIIHALESYVLNP 283

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKEKIS 357
            L+     LP   TF  L+ G    G+ GL +G PV+M  + V+   +   I++ K+ IS
Sbjct: 284 KLMSAKTNLPVFYTFIILIFGEHFFGIWGLIVGIPVVMFFLDVLGVTNQEEIEQPKDTIS 343

Query: 358 S 358
            
Sbjct: 344 H 344


>gi|328907725|gb|EGG27489.1| putative membrane protein [Propionibacterium sp. P08]
          Length = 430

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 105/336 (31%), Gaps = 28/336 (8%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYF-------LKGFFAPVLSALIIGFTSWPIYSSFISKK 55
           E   N  G+ +  I+ + + + +        L    AP+   L +  T++PI++  +  K
Sbjct: 75  EAATNKHGLPKLTIVLLTVAAAWLGLSFLHELSSVIAPLFFGLNLLITAYPIHTWLVKHK 134

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
                  A  A  +V+ +    +  + +     + +L S                  IP 
Sbjct: 135 CPR-WISATAAGTTVIVVLAAGVAGMVWSVAAMINQLQSY-----------------IPQ 176

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
                       +     + +    LK      +    +          + II ++  + 
Sbjct: 177 MEKIYTQLLHWSTQLGYSQEVITDKLKKIDPQQVMSVITSVASDTTSIVMMIIVILTGMI 236

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F   D   +  +L   G                  IR  +L  T+  +   L   +A  +
Sbjct: 237 FMVMDTPQMHDRLRMAGNRKPDVVLA--LESFSSGIRKYWLVTTVFGLIVALFDWAALLI 294

Query: 236 AGVPSHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
            GVP      + + +   IP    I      ++  L K     A  + +  +   F++  
Sbjct: 295 IGVPLAGVWALFSFLTNYIPNIGFIVGVIPPALLALFKDGWVAAVAVVVSYSALNFVIQS 354

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            ++P   G  + L    +F  L+      G LG  I
Sbjct: 355 IIQPKFAGDAVGLTPTMSFVSLLLWGWVFGALGTLI 390


>gi|260461112|ref|ZP_05809361.1| protein of unknown function UPF0118 [Mesorhizobium opportunistum
           WSM2075]
 gi|259033146|gb|EEW34408.1| protein of unknown function UPF0118 [Mesorhizobium opportunistum
           WSM2075]
          Length = 389

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 63/330 (19%), Positives = 123/330 (37%), Gaps = 14/330 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + +F+ + +LYF + FF PV+ A ++  T  PI    + K+       A +  +  +C+F
Sbjct: 36  IFLFMAIYALYFARAFFMPVILAFLLALTLTPI-VRILRKRGIPEVASATLLVLLSICVF 94

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
                     G L    +   +  ++  G  +   L+ +       E   +     + L 
Sbjct: 95  -------ASAGYLLSSPVFDLINNSSSIGQQLTERLAQL---RRPLEKIMQISHQIEQLT 144

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
             S+               S      L    S+  + +   F    G    +++      
Sbjct: 145 ETSQEPGIQKVAVAQSGILSAAASNILSAGTSLTIIFVLSLFLLASGTMFYEKIIQSFAS 204

Query: 195 LFPA-YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           L       ++   V + I    L +TII  G G V+G   W  GVP+ +  GV  A+   
Sbjct: 205 LSEKKRALRVVYDVEREISHYLLTVTIINAGLGTVIGLGLWALGVPNPLVWGVAAALFNF 264

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK-TLRPFLVGGPIKLPFLP 311
           +P  GA ++   V++  LI  +  +   L     +   +V+   + P +VG  +++  + 
Sbjct: 265 LPYVGALLTIVLVAVIALISFDTISYALLAPAFVLLCDVVEGQFVTPMVVGRRLEINAVA 324

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            F  +       G +G  +   L+ +I V 
Sbjct: 325 IFIAIAFWSWLWGFVGALMAVPLLVVIKVF 354


>gi|228477407|ref|ZP_04062043.1| conserved hypothetical protein [Streptococcus salivarius SK126]
 gi|228250842|gb|EEK10030.1| conserved hypothetical protein [Streptococcus salivarius SK126]
          Length = 378

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 53/339 (15%), Positives = 121/339 (35%), Gaps = 14/339 (4%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKK------EESSTFLAVIATVSVMCLFIVPLLF- 80
           + F      A ++       Y   + K        +    +A+++ ++ + L    ++F 
Sbjct: 40  QPFLVGAGIAFVVNILMS-FYEKLLVKFIPFGFITKIKRPIALLSALATIGLVFTWVVFT 98

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           +    +  +  L+S+   A  + I    WL          +         + +   S   
Sbjct: 99  VLPDLIDSINTLISQDRSAINNLI---NWLLKNKSLQKIIQDLGGVTQVRELINSYSAQL 155

Query: 141 LKT--NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
           L+   NG+       +      ++  +SI+F    L    + G  +++ +D         
Sbjct: 156 LQQIMNGLTSFLTSLTSLPSTLINLFISIVFSCYVLAGKEKLGNQVNRLVDVYLGRY-GK 214

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
            +  +  I+    R+ F+  +I A   G +      +   P    + ++    AMIP   
Sbjct: 215 TFHYVVAILNNRFRNFFVYQSIEACILGTLCYIGMRIFDFPYAATISILIGFSAMIPVVG 274

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
                 +   L++  ++  A     +  I        + P++VGG   LP +   F +  
Sbjct: 275 AYIGVTIGTILIMTHSVTLALLFIAYVVILQQFEGNLIYPYVVGGSTGLPGIWVIFAITI 334

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           G    G+LG+ +   + A +  I K++++  +E K   +
Sbjct: 335 GSALGGILGMLVSVPVAATLYQIVKDNVVRREEAKAANA 373


>gi|329571947|gb|EGG53620.1| hypothetical protein HMPREF9520_02429 [Enterococcus faecalis
           TX1467]
          Length = 366

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 56/344 (16%), Positives = 117/344 (34%), Gaps = 15/344 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKK---------EESSTFLAVIATVSVMCLFIVP 77
           L G  +P ++  +I +                      +       ++  + ++ +F++ 
Sbjct: 23  LLGILSPFITGFVITYLLSGSQKKIEGLLERVPLPVVKKAKHGLSVLLLYLIILFIFVLT 82

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLKI 135
           L ++    +  + +L + +     H +     L D  I       +     L      + 
Sbjct: 83  LNYIVPLLISNLVDLANSLPTFYDHMVQFVMSLEDKGILKTAAIEKYLNSVLKDLSPERF 142

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           L++    T  +  +          FL+  L++I  I AL F       + +    L    
Sbjct: 143 LNQ---WTQALFSLGTLTKNVSSFFLNAFLTLIISIYALVFKQSILTFVEKAAHKLLSEK 199

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                +       K+         + A   G+       +  V   V LG++  I  MIP
Sbjct: 200 VYKQTQTWLNTTNKIFYKFISCQFLDACIIGVSSTILLSILNVKFAVTLGILLGICNMIP 259

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G+  +     +  L  G +  A  + L   I   I    + P ++G  + +  +    
Sbjct: 260 YFGSIFASIVAGVITLFTGGVTQAITVLLVLLILQQIDGNIIGPRIMGDALNVNPILIIV 319

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            +  G    G+LG+F+   + A+I +I  E +   KEN + + S
Sbjct: 320 SITIGGAYFGVLGMFLAVPVAAIIKIIVSEWLNESKENDKIVDS 363


>gi|313124003|ref|YP_004034262.1| permease [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280566|gb|ADQ61285.1| Predicted permease [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 377

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 86/247 (34%), Gaps = 7/247 (2%)

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
              L+ +  +   S       +L+  G     +  +  +       +     F +I   +
Sbjct: 127 LESLYDQLKAQYSSFINEILAYLQKQGWSTSGLVSYMQKGVGRVTGFLSDFFFGMIFAIY 186

Query: 177 FYRDGFSISQQ----LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
           F  DG  I+      L +L         K       +       G  I A   GL++  A
Sbjct: 187 FLYDGQRIAAYWKRNLGTLLNKKVIRGIKIFLADADRAFSGYIRGQIIDAFIVGLLVSLA 246

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
             +A VP  + +G++T +  +IP   PI    + I          A  + +   + +  +
Sbjct: 247 MLIAKVPYGLLIGLVTGLGNLIPYFGPILGYGMVILACTLSQNMTALIVGMIILLLIQAI 306

Query: 293 D-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           D   L P L+   I +  L     ++ G    G +G+ I   + AL+   ++  I   ++
Sbjct: 307 DGNILNPKLLSSAIHIHPLYVIVCVIAGGAMGGFVGMLIAVPMGALLKTEFERLIAYRQK 366

Query: 352 NKEKISS 358
             EK   
Sbjct: 367 QLEKSKE 373


>gi|217964433|ref|YP_002350111.1| conserved integral membrane protein [Listeria monocytogenes HCC23]
 gi|217333703|gb|ACK39497.1| conserved integral membrane protein [Listeria monocytogenes HCC23]
 gi|307571002|emb|CAR84181.1| membrane protein, putative [Listeria monocytogenes L99]
          Length = 345

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 115/361 (31%), Gaps = 26/361 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
            + L  + + R  +  +I   LY L+     +L   I  +    + +  + +       +
Sbjct: 5   SSFLQNRSVRRVGVFILIAFVLYLLRSQMNIILLTFIFSYLITRLENFILRRISIYRQII 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    +  + I   +        ++ +LV                             
Sbjct: 65  VLLLYALIAVVIIFVFVKYIPVLADQINQLVKFGNTFLTT-------------------- 104

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
              +      +  L+  F      +        +        +++   ++   FF     
Sbjct: 105 -DSNNDFINYIVSLANQFDIMKYTEQGVSMILTYLTNVGTVLMNVFIALMLSLFFSLGKE 163

Query: 183 SISQQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            +    +          +++                    IIA+   ++   A W+ G P
Sbjct: 164 HLVSFTNQFSTSKIGFIYEEVKFFGSKFVATFGKVIEAQFIIALVNAILTTIALWILGFP 223

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             + L ++  ++ +IP  G  IS   ++I     G +     + +   I   +    L P
Sbjct: 224 QLMTLSIMVFLLGLIPVAGVIISLVPLTIIGYSIGGVEYIFYILVVVIIIHALESYVLNP 283

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKEKIS 357
            L+     LP   TF  L+ G    G+ GL +G PV+M  + V+   +   I++ K+ IS
Sbjct: 284 KLMSAKTNLPVFYTFIILIFGEHFFGIWGLIVGIPVVMFFLDVLGVTNQEEIEQPKDTIS 343

Query: 358 S 358
            
Sbjct: 344 H 344


>gi|325685991|gb|EGD28052.1| permease [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 378

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 86/247 (34%), Gaps = 7/247 (2%)

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
              L+ +  +   S       +L+  G     +  +  +       +     F +I   +
Sbjct: 128 LESLYDQLKAQYSSFINEILAYLQKQGWSTSGLVSYMQKGVGRVTGFLSDFFFGMIFAIY 187

Query: 177 FYRDGFSISQQ----LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
           F  DG  I+      L +L         K       +       G  I A   GL++  A
Sbjct: 188 FLYDGQRIAAYWKRNLGTLLNKKVIRGIKLFLADADRAFSGYIRGQIIDAFIVGLLVSLA 247

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
             +A VP  + +G++T +  +IP   PI    + I          A  + +   + +  +
Sbjct: 248 MLIAKVPYGLLIGLVTGLGNLIPYFGPILGYGMVILACTLSQNMTALIVGMIILLLIQAI 307

Query: 293 D-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           D   L P L+   I +  L     ++ G    G +G+ I   + AL+   ++  I   ++
Sbjct: 308 DGNILNPKLLSSAIHIHPLYVIVCVIAGGAMGGFVGMLIAVPMGALLKTEFERLIAYRQK 367

Query: 352 NKEKISS 358
             EK   
Sbjct: 368 QLEKSKE 374


>gi|156743346|ref|YP_001433475.1| hypothetical protein Rcas_3407 [Roseiflexus castenholzii DSM 13941]
 gi|156234674|gb|ABU59457.1| protein of unknown function UPF0118 [Roseiflexus castenholzii DSM
           13941]
          Length = 407

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 52/356 (14%), Positives = 115/356 (32%), Gaps = 20/356 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
            +    I  I  +  + ++G      P + A I  +   P+ +    +            
Sbjct: 13  TVKLITIALIAALFFWLIRGLGNVLIPFVGAAITAYLFNPLITWLHRRARIGRA------ 66

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
               + L  V +  + Y     +  ++ +     Q  IP    L      +    +    
Sbjct: 67  --IWIGLLYVVIGGIIYGLWRTLGPVIEREYSGLQAQIPHTLNLIQQELLLRDRIMVAGI 124

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                 +       L   G   IP        +  +  L  +  +I  F+   +   I +
Sbjct: 125 SVEVAPITEALREALADFGRR-IPEHVPHLVAVAFETLLLFVTYLIVTFYLLLEAPRIVE 183

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L  L    + A  + +   +  ++     G  ++      +   A  L GV   + LG+
Sbjct: 184 WLYELVPAPYRAEIRTLGSHIDHILAGYVRGTLMLIPIMATLTTIALTLLGVRYALVLGI 243

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKG--------NIFNATCLFLWGAIELFIVDKTLRP 298
           +T I+  +P   P S   ++I + +              A  + L   +     D  + P
Sbjct: 244 VTGILETLPLLGPWSAAGIAITVALFQMPAPWGWPAWLIAGSIGLTYFVLRMFEDNFIIP 303

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            +VG  + L  +   F ++ G    G  GLF+   + A+  ++ +     + ++ +
Sbjct: 304 HVVGPAVHLHPMLVIFAILAGGALGGPFGLFVAIPVTAVARLLLRYLYYKLIDSPD 359


>gi|313899169|ref|ZP_07832690.1| putative membrane protein [Clostridium sp. HGF2]
 gi|312956038|gb|EFR37685.1| putative membrane protein [Clostridium sp. HGF2]
          Length = 365

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 116/322 (36%), Gaps = 27/322 (8%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           PVL  ++I F   P+         +          ++VM ++I   L L  + +  +  +
Sbjct: 49  PVLMGIVIAFLLQPLIDRLQQHVSQK---------LAVMLVYIGIALVLAVFVIGMIPII 99

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
             +V+   +    VP W+  +           ++     +L+ L E +L+   I  I   
Sbjct: 100 YKQVMDFAE---VVPVWMRHL------EGFLDRYHIAIGNLETLKEKYLQEGYIIVIDSL 150

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
                   +    +     I  FF   D     +    +  +L    +      +  ++ 
Sbjct: 151 -----RNTMHTATNYGIAYITAFFISIDLDFWKRTAKKVIPNL--HQFSTFYLTMSNIVY 203

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLI 271
              +G  +  +   + +G   ++   P+ +   VI A++ + P  GA      ++I   +
Sbjct: 204 QYLVGTFLDILFIVVTVGITLYIFAFPNALLYAVILALLNLFPYVGATFGLILIAIVGAL 263

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
              +F      +   I+  I    ++P +    + +  + TF  +       G++G+ + 
Sbjct: 264 SYPVFPFLAFAIVWTIQQ-IESNFIQPMIFNRTMHVRPILTFVFIFLSEALFGVVGVILS 322

Query: 332 PVLMALIAVIWKESIMAIKENK 353
           P+  A+  + ++  + +   +K
Sbjct: 323 PIFAAIAQIAFRSWLHSKTSDK 344


>gi|294501351|ref|YP_003565051.1| putative permease [Bacillus megaterium QM B1551]
 gi|295706698|ref|YP_003599773.1| hypothetical protein BMD_4599 [Bacillus megaterium DSM 319]
 gi|294351288|gb|ADE71617.1| putative permease [Bacillus megaterium QM B1551]
 gi|294804357|gb|ADF41423.1| putative membrane protein [Bacillus megaterium DSM 319]
          Length = 353

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 52/324 (16%), Positives = 113/324 (34%), Gaps = 17/324 (5%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           F+ L  +Y       P   A  I +   P+      K             ++++ ++I+ 
Sbjct: 30  FLWLPVIYMFLKALLPFFIAAFITYLLHPLIEKTHDKGVPRP--------LAILLIYIIF 81

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
              + +         V +V   N+                W   +  +  S P  +    
Sbjct: 82  FGGIGFGAYKSYPIFVEQVKDLNEQLPHFTNTYRH-----WVESIHDRTTSLPNGVHEKI 136

Query: 138 ETFL---KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           E  +   +     ++ + A       +   L +I +   +F+  +D  SI +    +   
Sbjct: 137 EGSIDDVEATLNVWLTKVAEGL-KSLITSFLILIIIPFIVFYMLKDFSSIKKATAYVTPK 195

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            +    ++    V + + +   G   + +  G++  +A W   VP  + LG I  +  +I
Sbjct: 196 KWHKPGERFLSDVNESLGNYIRGQFFVCLIIGVIATAALWFFHVPYALLLGFIIGVTNII 255

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P   PI     +  +    +I     + +   +  F+    L P +VG  + +  L    
Sbjct: 256 PYFGPIIGAVPAAIIAATISIKLVITIVIIIFVLQFLEGNVLSPLIVGKSLHIHPLFIML 315

Query: 315 GLVGGVRTMGLLGLFIGPVLMALI 338
            L+ G    G+LGL +   ++A+I
Sbjct: 316 ALLLGGEFGGVLGLILAVPILAVI 339


>gi|238020124|ref|ZP_04600550.1| hypothetical protein VEIDISOL_02008 [Veillonella dispar ATCC 17748]
 gi|237863648|gb|EEP64938.1| hypothetical protein VEIDISOL_02008 [Veillonella dispar ATCC 17748]
          Length = 373

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 113/335 (33%), Gaps = 11/335 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEES---------STFLAVIATVSVMCLFIVPLLFL 81
           F P++    I F    +   +                   L+++ +   +   +  +  +
Sbjct: 41  FVPLIVGACIAFVLDILVVRYERWLWPKSKTGWKDKIRRPLSLVLSFVTISAIVYFIARM 100

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               ++    ++  V  + Q       W+      +  +   T   +      +      
Sbjct: 101 AIPQLIHSMSII--VASSPQLYTDFQTWMQHFTETIPMASNQTLMDTLSGESVVKYTREW 158

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            T G  ++           L+  L +IF I  L    R      + L +     +     
Sbjct: 159 GTKGGTYLVNAMGTALSWTLNIGLGLIFAIYMLLDKERLMMQGKRILKAYASDEWVNRVS 218

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            ++R+  +   + F+G  I A+  G+++G + W   +     +  +  + A++P      
Sbjct: 219 YVTRVAVQTFSNFFVGQFIDALILGIMVGISLWAFNIEYATTIACVIGLTALVPLLGIYV 278

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
              +   +L+  +  +A    +   +   I    + P +VG  + LP L  F  ++ G  
Sbjct: 279 GGVIGAVILLTVSPMDALIYVIILEVLHQIESNFIYPKIVGNSVGLPGLWVFAAVIVGGS 338

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            MG+ G+ IG  L+A    +    +     + E +
Sbjct: 339 LMGVTGMLIGVPLVATCYKLLMTDVNDRLASNEGL 373


>gi|209695807|ref|YP_002263737.1| membrane protein [Aliivibrio salmonicida LFI1238]
 gi|208009760|emb|CAQ80066.1| membrane protein [Aliivibrio salmonicida LFI1238]
          Length = 355

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 53/340 (15%), Positives = 123/340 (36%), Gaps = 14/340 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +    I+ +  +++YF     AP+L A+++ +   WP+    +SK     T   + 
Sbjct: 15  DPHAVSLVAILVVGFITIYFFGHLIAPLLVAIVLAYLLEWPVAK--LSKFGLPRTLAVMF 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + L ++ +  L      ++  L++ +         +   LS +P           
Sbjct: 73  VVLLFISLMLLAVFGLVPTIWNQVGNLINDIPSMFNG---LHSLLSSLPDRYPEFIQPQS 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +   +++       +T     +    S          + +I + + +FF  +D   + 
Sbjct: 130 IDTLLDTVRGKVLGMGETMVKGSLSSLIS-----LAALGVYLILVPLLVFFLLKDKDEMV 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + + ++          K+   + + I +   G  +  +  G V  + +++  +   + L 
Sbjct: 185 RTMSNILPK-NRRLATKVWVEMNEQISNYIRGKVVEILIVGTVSYATFFIMDLRYALLLA 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATC-LFLWGAIELFIVDKTLRPFLVGG 303
           V+     +IP  GA      ++I  L +  +      L L  AI   +    L P L   
Sbjct: 244 VMVGFSVLIPYIGAAAVTVPIAIVALFQWGLTPDFYWLILAYAIIQALDGNVLVPVLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            + L  +     ++      G  G+F    L  L+  +WK
Sbjct: 304 AVNLHPVAIIVSVLVFGGLWGFWGVFFAIPLATLVKAVWK 343


>gi|260912796|ref|ZP_05919282.1| PerM family permease [Pasteurella dagmatis ATCC 43325]
 gi|260633174|gb|EEX51339.1| PerM family permease [Pasteurella dagmatis ATCC 43325]
          Length = 355

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 58/342 (16%), Positives = 115/342 (33%), Gaps = 13/342 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +PQ +  + I+    +S+YF     AP+L A+++ +   WPI      K +        +
Sbjct: 15  DPQAMGLFAILLFGFISIYFFSHLIAPLLIAIVLAYLLEWPI-RFLTDKLKFPRLLSTAL 73

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
                + L +V +L L      +   LVS +         +  WL  +P        +  
Sbjct: 74  IFGGFLSLILVIVLVLIPTLWTQTVNLVSDLPHMFNT---INVWLLSLPEHYPELVDYQT 130

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S   S+K     F ++     +    S   +    + + ++      FF  +D   + 
Sbjct: 131 IDSVLNSVKAKILGFGESALKFSLTSLLSLVTLGIYAFLVPLMV-----FFLLKDKKELM 185

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +              + + + + I +   G     I    V  + +   G+   + L 
Sbjct: 186 TGVSRFLPK-NRTLASNVWQEMQQQIANYIRGKLFEIIIVTAVTYAIFLFFGLNYSLLLA 244

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGG 303
           V   +  ++P  GA +    V++    +  I       L   I   ++D   L PFL   
Sbjct: 245 VAVGLSVLVPYIGAVLVTIPVALVAAAQFGISPTFWYILIAYIVSQLLDGNLLVPFLFSE 304

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            + L  L     ++      G  G+F    L  L+  +    
Sbjct: 305 AVNLHPLVIIIAVLIFGGLWGFWGVFFAIPLATLVKAVVNAW 346


>gi|251798577|ref|YP_003013308.1| sporulation integral membrane protein YtvI [Paenibacillus sp.
           JDR-2]
 gi|247546203|gb|ACT03222.1| sporulation integral membrane protein YtvI [Paenibacillus sp.
           JDR-2]
          Length = 343

 Score = 76.4 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 120/319 (37%), Gaps = 4/319 (1%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
           AP L AL++     P+    I + + +    + I++     + I  +  L    + E+  
Sbjct: 24  APFLLALVVAIFLEPLTQFLIRRLKTNRLVASTISSSLFTVILIGLMALLGVKVVAELIA 83

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
              KV             L +    ++A+            L  +S++     G   +  
Sbjct: 84  FAQKVPNYVGDASTYVTDLVENARSLYANFSPDTVGQIENWLTDMSKSLTGMVGS--LSS 141

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
               F        +  I  ++A++ F     ++     +L E        ++   + K I
Sbjct: 142 SVISFASGIPSMFIFFIVFLVAVYMFGFSLNTMKDTFLTLFEEKSRPQVNEVLDNLKKSI 201

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLL 270
                   I++    ++      +  +   +A+ ++  I+ ++P  G          YL+
Sbjct: 202 FGFLRSQIILSALTYILSLIGLIILDIKYPLAIALLIVIVDIMPILGTGTVLVPWGTYLV 261

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           I G+++    L++   + + +  + + P ++G  + +  L     L  G + +G++G+F+
Sbjct: 262 ITGDLYAGIGLYIL-FLFMTVFRRIVEPKILGDSVGIGSLSALISLYVGFKLVGVIGVFL 320

Query: 331 GPVLMALIAVIWKESIMAI 349
           GP+++ +   I K  +  I
Sbjct: 321 GPLVVIIYMAIRKAGLFKI 339


>gi|152996109|ref|YP_001340944.1| hypothetical protein Mmwyl1_2087 [Marinomonas sp. MWYL1]
 gi|150837033|gb|ABR71009.1| protein of unknown function UPF0118 [Marinomonas sp. MWYL1]
          Length = 353

 Score = 76.4 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 58/346 (16%), Positives = 113/346 (32%), Gaps = 22/346 (6%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS-----TF 61
           N + ++  +++   L  L F  G  AP+L A+++ F    +       +          F
Sbjct: 15  NEEVVVFLLLLIATLCVLAFWGGILAPILIAIVLAFLLQGLVDRLQRLRLGHLPSVFIVF 74

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              + T SV    +VP+++         ++ V  V  A +  + +   +     G     
Sbjct: 75  FTFLTTCSVFIGVMVPIIW---------RQAVRLVQDAPRMFMVIRNEVQQFAEGHSDLV 125

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                     SL   S     TN   ++  F+           + ++ + + +FF  +D 
Sbjct: 126 SQAAIDEVTNSLANES-----TNLGQWLLSFSLSSIPSLFSVVIYVVLVPLVIFFLLKDQ 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I   L S          + I+  +   I +   G  I     G+V    + + G+   
Sbjct: 181 DKILTYLTSWLPK-ERKMMRNIAHEMNGQIANYIRGKFIEMFVVGVVTYVVFLVFGLKYA 239

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPF 299
             L ++  +  +IP  GA      V +    + G       + +   I   +    L P 
Sbjct: 240 ELLALLVGLSVLIPYIGAAAVTIPVVLVAFYQYGTQSEFIYVVVAYLIVQALDGNVLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           L    + L  L     ++      G  G+F    L  L+  I    
Sbjct: 300 LFSEAVNLHPLAIIVAVLFFGGIWGFWGIFFAIPLATLVKAIINAW 345


>gi|329121018|ref|ZP_08249649.1| protein of hypothetical function UPF0118 [Dialister micraerophilus
           DSM 19965]
 gi|327471180|gb|EGF16634.1| protein of hypothetical function UPF0118 [Dialister micraerophilus
           DSM 19965]
          Length = 347

 Score = 76.4 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 78/196 (39%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           + +F+           L +I +    F+F + G        SL    +      +   + 
Sbjct: 144 LAQFSISAVFSVASTLLELIVVPFITFYFMKKGSVFKDLFISLFPERYSNRLNILFSEIY 203

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
            V+ +   G  ++++   + +     +  +P  + +G++  ++ MIP   PI      I 
Sbjct: 204 NVLHAYIRGQLLLSVIMTIFVCIGMSMFDIPYPLVIGLLAGVLEMIPIVGPIIGALPPIV 263

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L +      A  + ++      +    + P L+G  IK+  +    G++ G +  G++G+
Sbjct: 264 LGLLQGTSTAIQVTIFYIFVQQLDAHLIMPKLMGSIIKVHPIVIIAGVLIGGQLYGVIGM 323

Query: 329 FIGPVLMALIAVIWKE 344
            +    +A++ ++ + 
Sbjct: 324 MVSVPFIAVLQIVLRH 339


>gi|317507941|ref|ZP_07965636.1| transmembrane protein [Segniliparus rugosus ATCC BAA-974]
 gi|316253752|gb|EFV13127.1| transmembrane protein [Segniliparus rugosus ATCC BAA-974]
          Length = 382

 Score = 76.4 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 65/194 (33%), Gaps = 1/194 (0%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           I           ++        +  L FF  DG  I   L  L         +       
Sbjct: 162 IAGGVFSTASALVEGVTGFFLTLFTLIFFLSDGQEIWYYLTKLVPEPARDRVRAAGGAGY 221

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           + +     G  ++A  + + +G       VP  + L  +  + A IP    +    V++ 
Sbjct: 222 RTLTGYVKGTALVAAADAIGIGIGLAALRVPLALPLASLVFLGAFIPVVGSLVAGLVAVL 281

Query: 269 L-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           + L+      A          + +    L+P ++G  +K+  L     +  GV   G++G
Sbjct: 282 VALVTQGPVVALLTIALLVGVMQLESHVLQPLVLGRAVKVHPLAVILAIATGVVLAGIVG 341

Query: 328 LFIGPVLMALIAVI 341
             +   L+A++   
Sbjct: 342 ALLAVPLVAVLNTF 355


>gi|15675097|ref|NP_269271.1| hypothetical protein SPy_1117 [Streptococcus pyogenes M1 GAS]
 gi|28895889|ref|NP_802239.1| hypothetical protein SPs0977 [Streptococcus pyogenes SSI-1]
 gi|71903480|ref|YP_280283.1| hypothetical protein M28_Spy0815 [Streptococcus pyogenes MGAS6180]
 gi|94988588|ref|YP_596689.1| hypothetical protein MGAS9429_Spy0958 [Streptococcus pyogenes
           MGAS9429]
 gi|94992411|ref|YP_600510.1| hypothetical protein MGAS2096_Spy0914 [Streptococcus pyogenes
           MGAS2096]
 gi|94994386|ref|YP_602484.1| hypothetical membrane spanning protein [Streptococcus pyogenes
           MGAS10750]
 gi|13622254|gb|AAK33992.1| hypothetical protein SPy_1117 [Streptococcus pyogenes M1 GAS]
 gi|28811139|dbj|BAC64072.1| hypothetical protein [Streptococcus pyogenes SSI-1]
 gi|71802575|gb|AAX71928.1| hypothetical membrane spanning protein [Streptococcus pyogenes
           MGAS6180]
 gi|94542096|gb|ABF32145.1| hypothetical membrane spanning protein [Streptococcus pyogenes
           MGAS9429]
 gi|94545919|gb|ABF35966.1| hypothetical membrane spanning protein [Streptococcus pyogenes
           MGAS2096]
 gi|94547894|gb|ABF37940.1| hypothetical membrane spanning protein [Streptococcus pyogenes
           MGAS10750]
          Length = 382

 Score = 76.4 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 113/296 (38%), Gaps = 8/296 (2%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           I  +     F + + ++    + ++   +S +   +   I     ++++      +    
Sbjct: 87  ICLLLAYLTFFILITWIISIVIPDLITSISTLTKFDTITIQ--EVVNNLEHNKLLARTIQ 144

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL--DYCLSIIFMIIALFFFYRDGF 182
            ++     L      + +     F+    +    + +     +++    +   +      
Sbjct: 145 -YIGGDGKLTETIANYSQQLLKQFLTVLTNILTSVTVIASAIINLFISFVFSLYVLASKE 203

Query: 183 SISQQLDSLGEHLFPAYWKKI---SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            + +Q ++L +     Y K+I     ++ +     F+  T+ A+  G +  S  ++  +P
Sbjct: 204 DLCRQGNTLVDTYTGKYAKRIHYLLELLHQRFHGFFVSQTLEAMILGSLTASGMFILRLP 263

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               +GV+ A  A+IP        A+   L++  ++  A    ++  I   I    + P 
Sbjct: 264 FAGTIGVLVAFTALIPVIGASIGAAIGFILIMTQSMSQAIIFIIFLIILQQIEGNFIYPK 323

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +VGG I LP +     +  G    G++G+ I   L A +  + K++I   +  ++K
Sbjct: 324 VVGGSIGLPAMWVLMAITIGASLKGIVGMIIAVPLAATLYQVIKDNIQKRQAIQKK 379


>gi|330431381|gb|AEC16440.1| putative transport protein [Gallibacterium anatis UMN179]
          Length = 353

 Score = 76.4 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 43/342 (12%), Positives = 108/342 (31%), Gaps = 11/342 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ    + ++ I+ V  YF    F P+L A+++ +          ++ +     
Sbjct: 10  RRRFSDPQAAGLFSLLLIVCVGFYFFSDLFTPLLIAIVLAYLLELPIQYLTTRFKFPHLL 69

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +     +   +   + +      +   L+  +   +     + +W+  +P       
Sbjct: 70  ALALVLGGFIAAVLFVFIVMIPTLWNQTVNLLKDLPTMSN---QLHQWVLSLPENYPEYV 126

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            +    +    L+     F ++     +    S   +    + + ++      FF  +D 
Sbjct: 127 DYAMIDTVFNGLREKILGFGESALRYSLTSIVSLVTLGIYAFLVPLMV-----FFLLKDK 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +             ++   + + I +   G  +  +    V    + +  +   
Sbjct: 182 NYLISGVSRFLPK-NRQLVNQVWDEMKQQIANYIRGKVVEIVVVTAVSYVTFLIFKLNYS 240

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATC-LFLWGAIELFIVDKTLRPF 299
           + L V   +  ++P  GA +    +++  L +         L L   I   +    L P 
Sbjct: 241 LLLAVAIGLSVLVPYVGAVLVTIPLALVALFQFGWSATFGYLMLVYTITQILDGNLLVPL 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           L    + L  L     ++      G  G+F    L  L+  I
Sbjct: 301 LFSEAVNLHPLVIIVSVIFFGGLWGFWGVFFAIPLATLVKAI 342


>gi|160946181|ref|ZP_02093392.1| hypothetical protein PEPMIC_00143 [Parvimonas micra ATCC 33270]
 gi|158447704|gb|EDP24699.1| hypothetical protein PEPMIC_00143 [Parvimonas micra ATCC 33270]
          Length = 394

 Score = 76.4 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 106/289 (36%), Gaps = 9/289 (3%)

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVL-ANQHGIPVPRWLSDIPGGMWASELWTK 125
             +++  + +   F+       + +  S + +  ++  I +   +      +   EL ++
Sbjct: 87  MSAIIITYFIFFTFIILLLKYIIPQFYSNIKMFVDRTPIFIDMGVEKAKYMLQNVELSSE 146

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S          TF  T   D IP + + F    +   L+II  II   +   D  + S
Sbjct: 147 IRSFINGKLTEFATFSTTFLTDMIP-WVATFATRVVSLFLNIILAIIISGYLLYDKENFS 205

Query: 186 QQLDSLGEHLFPAYWKKIS----RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
           + L      +FP    +I+    +     ++S  L   I AI  G+          +   
Sbjct: 206 RILKKFMIAVFPEKANRITFKIVKRFDYTLKSYLLAKGIGAIIVGITFYIILLFMKIDYA 265

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPF 299
           +    I     +IP  G  +    ++I LL   + FN    F+   + + ++D   + P 
Sbjct: 266 LLFAFILGFTNLIPWFGCYLGAIPIAIVLLFT-STFNTVLWFMIIVVIVSMIDANVISPR 324

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           + G  + +      F LV G    G++G  +   +  +I    KE I A
Sbjct: 325 VSGKSLGISSFWVIFALVLGGSLFGIIGFLLSVPVFVVIYTTLKEYIEA 373


>gi|269956268|ref|YP_003326057.1| hypothetical protein Xcel_1468 [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304949|gb|ACZ30499.1| protein of unknown function UPF0118 [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 368

 Score = 76.4 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 98/298 (32%), Gaps = 13/298 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F  V  AL++     P+   F         F   +  ++ + +    + ++      + +
Sbjct: 42  FIAVFLALVLTSVLRPLTDWFARVVP--RPFAIGLTFLTALIVVGGLVTYVVASVAGQWQ 99

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L  +        I    WL+  P  +  S                +  ++  N  D   
Sbjct: 100 TLGEEFTDGVDQII---GWLATGPLRLDISP------EAFTDALEAARQWIADNAADVAG 150

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
           + A   G +   + + +   I    FF   G ++ +   +         W   +    + 
Sbjct: 151 QTAQTVGTVVEAFAV-VALAIFCTVFFLLQGGAMWRWFLTQVPAGHRDRWDGAATAGWET 209

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYL 269
                 G  IIA+  GL+ G    + G+P    L V+  I   IP  GAP +     +  
Sbjct: 210 FAGYARGTVIIALTNGLMAGVFLAILGIPLAAPLAVLVFIGTFIPLIGAPAAMVIAGVVA 269

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           L       A  + L  A+   I    L+P ++G  + L  +     +  G    G+LG
Sbjct: 270 LAAEGPVKALIVILGVALIGQIEGHLLQPLIMGKQVALHPVIVAVAIATGTVLAGILG 327


>gi|116334605|ref|YP_796132.1| permease [Lactobacillus brevis ATCC 367]
 gi|116099952|gb|ABJ65101.1| Predicted permease [Lactobacillus brevis ATCC 367]
          Length = 363

 Score = 76.4 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 43/338 (12%), Positives = 108/338 (31%), Gaps = 31/338 (9%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           R+ ++ +I+  L+ ++     +L   I  F    +    +            +       
Sbjct: 15  RFTVLALIIFVLWLIRAEMNMILLTFIFTF----LVLQLVKAVRRVVKLPPALIVTVTYV 70

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           + I  L +     + ++                     S I G     + +    ++   
Sbjct: 71  VIIGLLYWAVTTYLPQILT-------------------SSIHGIENLYKFYQDPKNNSNE 111

Query: 133 LKILSETFLKT----NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      ++KT    N +    +    +      + +++   +I  FFF  +   ++   
Sbjct: 112 IISYVTNYIKTSDIVNQLQNGAKLVLTYVSTIGSFGVTLFMSMILSFFFTIESKQMAAFS 171

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                  +  +++ I+    K + +          IA+   ++      +  +P    L 
Sbjct: 172 KRFLTSTYGWFFEDINFFATKFVNTFGVVLEAQFFIALCNTVITTIVLAIMQMPQLPTLA 231

Query: 246 VITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           ++  I+++IP    I     ++I     G       + +   +   +    L P  +   
Sbjct: 232 IMIFILSLIPVAGVIVSIIPLAILGYSVGGFRYIVYILVMIVVVHALEAYVLNPKFMSSR 291

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            +LP   TF  L+ G +  G+ GL +G  +      I 
Sbjct: 292 TELPIFYTFVVLLAGEQLFGVWGLIVGVPIFTFFLDIL 329


>gi|111022838|ref|YP_705810.1| hypothetical protein RHA1_ro05875 [Rhodococcus jostii RHA1]
 gi|110822368|gb|ABG97652.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 403

 Score = 76.0 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 97/289 (33%), Gaps = 14/289 (4%)

Query: 43  TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH 102
             WP   +   ++   +   A  + V  + +    +  +    + +  EL +K       
Sbjct: 70  VLWPPTRAMTRRRIPPAAAAAT-SLVVFIAVVAGIIAGIVPSVVNQAPELANKATQGIN- 127

Query: 103 GIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD 162
              V  WL   P  +                 I +           I             
Sbjct: 128 --QVQDWLKGPPINLQ---------DDQIDQGIHTIVVKVQESGTVIASGVFTGVSTASS 176

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
             L++  +++  FFF +DG      L S+G      + + +   +   +        +++
Sbjct: 177 LLLTLGLVLVLSFFFIKDGPRFIPWLHSVGGGRAGRHLEVVLGRMWDTLGGFIRTQALVS 236

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCL 281
           + + + +G+   + GVP    L ++T I   +P  GA ++     +  L+   +  A  +
Sbjct: 237 LIDAVFIGAGLLILGVPLAPVLAILTFIGGFVPIVGAFVAGALAVLVALVANGLTTAVIV 296

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            +   +   I    L+P L    +KL  +     +  G    G++G F+
Sbjct: 297 LIIILVVQQIEGNVLQPVLQSKSMKLHAVVVLLAVTAGGSVFGIVGAFL 345


>gi|229086953|ref|ZP_04219110.1| hypothetical protein bcere0022_35260 [Bacillus cereus Rock3-44]
 gi|228696329|gb|EEL49157.1| hypothetical protein bcere0022_35260 [Bacillus cereus Rock3-44]
          Length = 335

 Score = 76.0 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 116/318 (36%), Gaps = 11/318 (3%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           ++  K    P   A  I +   P+      +            T++++ ++I+    + Y
Sbjct: 19  IFVFKVAITPFFIACFIAYLLHPLIEKLHKEGMPR--------TLAILLIYILFFGGIGY 70

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                   ++S++   N+     P+++      M      T +       K+        
Sbjct: 71  GIYKGTPVVISQLQEINK---QFPQFMKMYDSWMDGVTQQTDNFPSFIHEKVKQIFAGIE 127

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             I  +           LD  L I  +   +F+  +D          +  + + +  + +
Sbjct: 128 MKIQTLLDKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKMVPNKWRSTGQVL 187

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
           ++ + K + S   G   + +  G V   A+W  G+   + LG+I  +  +IP   P+   
Sbjct: 188 AKEIDKSLGSYIRGQLFVCLVLGGVSVLAFWFIGMKYPLLLGIIVGVTDIIPYFGPVLGA 247

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G    
Sbjct: 248 IPALMIAATISTNLFIKAGIALAILQFVESNILSPYIVGKSLRMHPVIIMLALLIGGEIG 307

Query: 324 GLLGLFIGPVLMALIAVI 341
           G++GL I   ++A+I  +
Sbjct: 308 GIVGLLIAVPILAVIRTV 325


>gi|319937594|ref|ZP_08011999.1| hypothetical protein HMPREF9488_02835 [Coprobacillus sp. 29_1]
 gi|319807434|gb|EFW04043.1| hypothetical protein HMPREF9488_02835 [Coprobacillus sp. 29_1]
          Length = 404

 Score = 76.0 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 99/302 (32%), Gaps = 3/302 (0%)

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
             +      +  +  + + I+ + F+    +  + +L+S +    +  +     +     
Sbjct: 79  RGARGIAITLTIIFALIVLILIVSFILPKVIESLAQLLSNMGNLLKGIVTSIDEVFIWLN 138

Query: 116 GMWASE---LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
             +  E        ++ P +    +      +  + +   A  F   F  + ++ +F + 
Sbjct: 139 IDYRVENIVQIDNIVNMPWNDIFKNVINFLASSANGLLDNAVTFTGTFFVWFMAFMFSLY 198

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
            L    R    + +                       + ++   G    A   G++    
Sbjct: 199 ILSGKERLLSQLRKVFIVFLREERAMALFDYGHQANVIFKNFITGQLTEACIIGIIYYIG 258

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
               G P    + +I A+ +++P   PIS   +  +L++  +        ++  +   I 
Sbjct: 259 MIFFGFPYPELIAMIIAVFSLVPVFGPISAMIIGAFLVMSQDFVTMIWFIVFFQVLSQIE 318

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           D  + P +VG  + LP L     +       GL+G+     L A    ++   I  + + 
Sbjct: 319 DNLIYPRIVGKSVGLPGLWVMLSIFILGDLFGLVGMITAVPLTAFAYTLFGRWIHNVLKR 378

Query: 353 KE 354
           + 
Sbjct: 379 RH 380


>gi|308174610|ref|YP_003921315.1| permease [Bacillus amyloliquefaciens DSM 7]
 gi|307607474|emb|CBI43845.1| putative permease [Bacillus amyloliquefaciens DSM 7]
 gi|328554535|gb|AEB25027.1| permease [Bacillus amyloliquefaciens TA208]
 gi|328912939|gb|AEB64535.1| putative permease [Bacillus amyloliquefaciens LL3]
          Length = 371

 Score = 76.0 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 77/197 (39%), Gaps = 2/197 (1%)

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +     ++     +     +F ++A FF  +D   +   L S+      A  K +S 
Sbjct: 158 LSHLLELVPKWIAFLPNTAAVFVFAMLATFFMTKDWHKLKALLYSILPERVSANAKAVSG 217

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTA 264
            + K +        ++ +   +++    +L G+     +     ++ ++P  GA   F  
Sbjct: 218 ELKKAMAGFIKAQAVLILFTMIIVFIGLFLLGIEHAATIAFFIGLVDLLPYLGAGSVFVP 277

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             +YL I G +  A  L +   I + I  +   P ++   I L  L T   L  G +  G
Sbjct: 278 WIMYLAIAGQLPQAIGLGILY-IVVLIQRQLTEPKILSKSIGLDPLATLIALFAGFKLFG 336

Query: 325 LLGLFIGPVLMALIAVI 341
           +LGL  GP L+  I   
Sbjct: 337 ILGLAAGPALLVFIQAF 353


>gi|302380888|ref|ZP_07269350.1| putative membrane protein [Finegoldia magna ACS-171-V-Col3]
 gi|303234851|ref|ZP_07321476.1| putative membrane protein [Finegoldia magna BVS033A4]
 gi|302311266|gb|EFK93285.1| putative membrane protein [Finegoldia magna ACS-171-V-Col3]
 gi|302493969|gb|EFL53750.1| putative membrane protein [Finegoldia magna BVS033A4]
          Length = 381

 Score = 76.0 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 49/332 (14%), Positives = 108/332 (32%), Gaps = 4/332 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +  F      A ++      I +  + K          I+ +  + +    L F+    
Sbjct: 44  IISPFIIGAALAFVLNMPMNFIENKLLKKWTSKPGLKRAISLLISLVIVSAILTFVVTLI 103

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +    E +  ++      +   R   +I          T  ++    L +  + +L  NG
Sbjct: 104 IPNFLEAIKSLIQGIPVLVEKLRKYPEI-AKQLDKIYDTYAITSTHDLFVKLKPYLTKNG 162

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS- 204
           +D +         +F      ++    A++  +       Q  +           K+I  
Sbjct: 163 LDILNNVFFGISTVFSVVLSFVVSFTFAIYLLFSKETLRRQFTELTYVFFSGKTAKRIIV 222

Query: 205 --RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             ++  +   S F G  I A   G +     +L  +P+   + V+    A+IP    I  
Sbjct: 223 FFKVAYEKFYSFFKGQFIEAFMLGFMCFIGMYLLKMPNAATVSVLIGFGALIPLVGAILG 282

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
            A+   +++  +   A    ++  +          P +VG  + LP +     +  G   
Sbjct: 283 AALGALIILIESFSKAIMFVIFIIVLQQFDGNVTYPRIVGSSVGLPSIWVLVAVTIGAAV 342

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            G++G+ I   + A I  +         E+K 
Sbjct: 343 SGIVGMLIFVPIFATIYELLYRYKKKKLEDKN 374


>gi|225376543|ref|ZP_03753764.1| hypothetical protein ROSEINA2194_02185 [Roseburia inulinivorans DSM
           16841]
 gi|225211580|gb|EEG93934.1| hypothetical protein ROSEINA2194_02185 [Roseburia inulinivorans DSM
           16841]
          Length = 457

 Score = 76.0 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 42/336 (12%), Positives = 110/336 (32%), Gaps = 25/336 (7%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEE---------------SSTFLAVIATVSVM 71
           L     PV+  L++ +   P+      K                  S       A + ++
Sbjct: 73  LTYILQPVIIGLVVAYLLNPLMKLIDGKLFSLFKGKMKSEKKAKKISRGLAIAGALLFLV 132

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK--HLSH 129
            + ++ +  +    +  ++ ++S +    +  +    W++DI  G        +      
Sbjct: 133 GIIVLLIAAIVPSIIQSIQGIISTLPAEVRSLV---DWINDIAKGDSQIADIAEEVITQA 189

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ-- 187
               +   +  L      +I    S      + + ++I+  +I   +        + Q  
Sbjct: 190 GNFFENWMKNTLLPQAEVYISSITSGVITG-VKFVINILVGLIISVYVMASQEKFAGQAK 248

Query: 188 --LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             + ++ + +      +  R   ++      G  + +   G++      +  +P  + + 
Sbjct: 249 KIIYAIFKPVRANVVVETVRKSNEIFGGFISGKILDSAIIGVIAYIVLAIMKMPDTMLVA 308

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           VI  +  +IP   P      S  +++  N        ++  I   +    + P ++G   
Sbjct: 309 VIIGVTNIIPFFGPFIGAIPSFIIIVLQNPVQGLYFLIFVIILQQVDGNIIGPKILGDST 368

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L      F ++      G  G+ +G  +MA+I  I
Sbjct: 369 GLSSFWVVFAILVFGGLWGFPGMLLGVPIMAVIYYI 404


>gi|254440895|ref|ZP_05054388.1| conserved domain protein, putative [Octadecabacter antarcticus 307]
 gi|198250973|gb|EDY75288.1| conserved domain protein, putative [Octadecabacter antarcticus 307]
          Length = 375

 Score = 76.0 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 56/367 (15%), Positives = 128/367 (34%), Gaps = 22/367 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSL-YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           + + +    W I   + V L + L     P +   +I +   PI          S     
Sbjct: 3   LPSQKEFQYWGIAAAVFVFLLWALGAVLTPFILGSVIAYFLDPIADRL-QIWGLSRVMAT 61

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+S +  F +  L +    + ++ +L+S + +  Q        L +   G + +   
Sbjct: 62  IVITLSGILTFFLLFLLVVPTLIGQLGQLISTIGVIIQDLPQTWTSLKEWLSGRFPN--L 119

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
               +            +++ G D +    S      ++  + ++ + +  F+   D   
Sbjct: 120 DLDGTFMLDQMTSLGNAVQSRGGDLVAALLSS-AQGIINVVVLLVIVPVVTFYMLLDWDR 178

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  Q+D+L         + ++R + + + S   G   + +  G     A  +AG+   + 
Sbjct: 179 MVAQVDNLLPLDHQETVRDLARQIDRTLASFIRGQGTVCLILGTYYAIALMIAGLNFGLI 238

Query: 244 LGVITAIMAMIPGGAPIS----FTAVSIYLLIKG-------------NIFNATCLFLWGA 286
           +G I  +++ IP    +        ++++    G             N      +    A
Sbjct: 239 VGFIAGLISFIPYIGALVGGVLAIGLALFQWWGGTAVIDGEIVQHGINWLRIGIVAGVFA 298

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
              F     L P LVG  + L  +     L      +G +G+ +   + A+I V+ +  I
Sbjct: 299 FGQFFEGNILTPKLVGSSVGLHPVWLILALSVFGSLLGFVGMLVAVPVAAVIGVVTRFLI 358

Query: 347 MAIKENK 353
              K  +
Sbjct: 359 AEYKSGQ 365


>gi|293376003|ref|ZP_06622261.1| putative membrane protein [Turicibacter sanguinis PC909]
 gi|292645380|gb|EFF63432.1| putative membrane protein [Turicibacter sanguinis PC909]
          Length = 382

 Score = 76.0 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 51/334 (15%), Positives = 117/334 (35%), Gaps = 18/334 (5%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS------KKEESSTFLAVIATVSVMC 72
           +I+ ++        PV+ A  I +  W              KK       +  +    + 
Sbjct: 36  LIIAAIKEFMAVITPVIIAFAIAYILWKPTVFVEKNLQKMTKKLMKRDLSSGASRGISLL 95

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           + +  ++ L       +   +   +      IP            +  ++     S    
Sbjct: 96  IVVSLVVMLILLLFNTIIPPIITNLKLLVDSIPAL----HQTFNKYIDDISPYIQSFITE 151

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFL----DYCLSIIFMIIALFFFYRDGFSISQQL 188
            +I   T   TN +++I     +FG   +     + +S++  II   +F +D  ++++ +
Sbjct: 152 EQINEITRAITNLLNYIATQILQFGTGMITNMTGFIISVLTTIILSIYFLKDKETLTRSV 211

Query: 189 DSLGEHLFPAYW----KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              G+ L         ++  + +  V     +   I AI  G+         G P  + +
Sbjct: 212 YKAGQTLLTPNGLKRSQQFLKDLDAVFGGFLIAQLIAAILAGIFSSLILIAIGHPFALLV 271

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           G++T +  +IP   PI    +   L +  ++  A    +   I   +    ++P L+   
Sbjct: 272 GLVTGVANVIPYVGPILGAVLGGLLGLFSSLKMAILSLVLLTIYQQLDANVIQPKLLSNS 331

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           + L  +     ++ G   +G+LG+ +     AL 
Sbjct: 332 VGLNPVWVLIAILIGGHYLGMLGMIVSIPSAALF 365


>gi|218129150|ref|ZP_03457954.1| hypothetical protein BACEGG_00725 [Bacteroides eggerthii DSM 20697]
 gi|217988669|gb|EEC54988.1| hypothetical protein BACEGG_00725 [Bacteroides eggerthii DSM 20697]
          Length = 376

 Score = 76.0 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 59/364 (16%), Positives = 130/364 (35%), Gaps = 19/364 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFL----KGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M    +     +R +I+ +I++ L  L         P   A +I +  +P+ + F  K +
Sbjct: 1   MERKKITFDSFIRGVILGVIIIGLLMLLKRLSSVLLPFFIAWLIAYLVYPLVTLFQYKLK 60

Query: 57  ESSTFLAVIATVSVMCLF-IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
             +  +++   +  + +        L    + E   + + ++    HG       + +  
Sbjct: 61  FKNRIVSIFCALFTILIIGAGAFYLLVPPMIQEFGRVQALLIQYFSHGTYNSNVPTSL-- 118

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
               SE    ++      ++ ++  L     + +PR  S                +I L+
Sbjct: 119 ----SEFLRDNIDAKFITELFNKENLLDALKEAVPRLWSLLSDSIDLLFSVFTIFLILLY 174

Query: 176 --FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
             F   D  SI++    L    +  +   I   +   +   F G   +A+  G++    +
Sbjct: 175 VIFILLDYESIAEGWTHLVPIKYRPFTISILNDIKTGMNRYFRGQAFVALCVGILFSIGF 234

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC-LFLWGAIELFIV 292
            +   P  + LG+    + M+P    I F    +  ++K +       + +  AI +FI+
Sbjct: 235 LIIDFPLAIGLGLFIGALNMVPYLQVIGFVPTIVLAILKASDTGGNFWIIIASAIAVFII 294

Query: 293 -----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
                D  + P ++G    L        L      MG+LG+ I   L  L+   ++  I+
Sbjct: 295 VQAIQDGFIVPRVMGKITGLNPAIILLSLSIWGSLMGMLGMIIALPLTTLMLSYYQRFII 354

Query: 348 AIKE 351
             + 
Sbjct: 355 NKEN 358


>gi|295134599|ref|YP_003585275.1| hypothetical protein ZPR_2757 [Zunongwangia profunda SM-A87]
 gi|294982614|gb|ADF53079.1| membrane protein, UPF0118 [Zunongwangia profunda SM-A87]
          Length = 362

 Score = 76.0 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 56/343 (16%), Positives = 127/343 (37%), Gaps = 18/343 (5%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + ++L  LY ++     +  A II     P+      + +  +    +I  + V+ +F+ 
Sbjct: 20  IMLMLFFLYEIQSVIVYIAVAAIISLIGRPVVIFLRQRLKIPNQIAVIIVLLLVLAIFVG 79

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +L      + + + L           I +  + SD+         +           + 
Sbjct: 80  IILVFVPIVIEQSQYL---------GRIDIEAFKSDLNDLNGQINDYLGVEEINIIESLK 130

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
              F+++  +  IP+F +    I     +++  +I   FF  +D   +   +        
Sbjct: 131 ESQFIRSLDVSLIPKFLNNVFGILGATIVALFSVIFISFFLLKDSKLMLNSILVFANRGK 190

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
              + ++   +  ++   F+G+T+      ++      L  V + VA+  I A + ++P 
Sbjct: 191 EQKFVRVFNKIKILLSRYFVGLTMQITVLFILYMILLTLFEVNNPVAIAFICAFLNLVPY 250

Query: 257 GAPISFTAVSIYLLIK---GNIFNATCL-----FLWGAIELFIVDKTL-RPFLVGGPIKL 307
             P+    +    +I    G  F A  L      + G     ++D  + +P + G  +K 
Sbjct: 251 LGPVFAGILMALFVISSNLGADFQAIILPKLIYVMLGYAICQVIDNLISQPMIFGASVKS 310

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             L  F  ++      G++G+ +   +   I VI KES+   K
Sbjct: 311 HPLEIFLIILIAGLVFGIVGMVVAVPVYTAIKVIAKESLSDYK 353


>gi|205375165|ref|ZP_03227956.1| hypothetical protein Bcoam_19347 [Bacillus coahuilensis m4-4]
          Length = 361

 Score = 76.0 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 44/324 (13%), Positives = 109/324 (33%), Gaps = 9/324 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           FI    +  LK  F P + A I+ +   P+      +K      + V     ++  + + 
Sbjct: 32  FIFTPIVVLLKTIFLPFILAGILFYLCRPLVRFLEKQKVPKGIAIIVAYIAIILAFYGI- 90

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
              +      ++   V       +       ++ D     +  E     +S  ++ +  +
Sbjct: 91  FKLIGPVVNDQIDRFVKNFPKMQEAVEESVTYVQD--NWEYLPESVRDMVSFDKAAE-RA 147

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
           ++F      DF+                 ++ +   LF+  +DG  +   +         
Sbjct: 148 QSFFTGFASDFV-----SILTNIFSTVFVLVLVPFILFYMLKDGNRLGNFIALFFPAHKR 202

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
              K +   + K I S   G  ++++  G +L   Y + G+   + L +   +  +IP  
Sbjct: 203 EDVKGVLGAMDKTISSYIQGQVLVSVCVGTLLLIGYLIIGLDYSLVLALFGMLTNVIPFI 262

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P      ++ + +  +      + +   I   I    + P ++G  + +  L     ++
Sbjct: 263 GPFIAVVPALLVALFQDPIMVVYVAIIMIIAQQIEGNIISPQVMGKTLDIHPLTIIVLIL 322

Query: 318 GGVRTMGLLGLFIGPVLMALIAVI 341
                +G LG+       A++  +
Sbjct: 323 FAGNLVGFLGIIFVIPTYAVVKTV 346


>gi|17228745|ref|NP_485293.1| hypothetical protein alr1250 [Nostoc sp. PCC 7120]
 gi|17130597|dbj|BAB73207.1| alr1250 [Nostoc sp. PCC 7120]
          Length = 362

 Score = 76.0 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 57/309 (18%), Positives = 114/309 (36%), Gaps = 16/309 (5%)

Query: 37  ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV 96
           A I+ F    +   F  +   + T   VI  +  + LF +  + L    + +  +L++K+
Sbjct: 44  AAILAFLLNYL-VKFFERARITRTQAVVIVLLVTLTLFGILTVTLVPMLIDQTVQLLNKI 102

Query: 97  VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT--NGIDFIPRFAS 154
                     P WL+     +   E + K    P  L++LS     +  + +  +   A 
Sbjct: 103 ----------PDWLTASQANLEHFERFAKQRRLPLDLRVLSNQINASIQSVVQQLASGAV 152

Query: 155 RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRST 214
                 L   L+ I +++  F+    G  +   L +L          K  ++     ++ 
Sbjct: 153 GLAGTLLSGLLNFILVVVLAFYMLIYGDRVWYGLINLLPSKIRFPLTKSLQLN---FQNF 209

Query: 215 FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGN 274
           FL   ++ +   + L   + +  VP  +   ++  I  +IP         +   L++  N
Sbjct: 210 FLSQLLLGLFMIVALTPIFLILKVPFALLFAILIGISQLIPFIGATLGIGLVTILVLLQN 269

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
            + A  + +   I   I D  L P L+G  I L  +  F  ++ G    GLLG  +   +
Sbjct: 270 WWLAVQVAIAAIIMQQIKDNLLSPRLLGNFIGLNPIWIFVAILMGYEIAGLLGTLVAVPI 329

Query: 335 MALIAVIWK 343
              I   + 
Sbjct: 330 AGTIKGTFD 338


>gi|256618945|ref|ZP_05475791.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256598472|gb|EEU17648.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
          Length = 350

 Score = 76.0 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 50/358 (13%), Positives = 119/358 (33%), Gaps = 23/358 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  + + R+ ++ +I+  LY  +     +L   I  + +  +        +  +  + ++
Sbjct: 8   IQNERLRRFCVLALIIFVLYLSRSMITTILLTFIFTYLAVRLVHFVQRYMKIPTIVIVLL 67

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
               V+ L  + +       + +  ++++ VV   Q        +               
Sbjct: 68  TYALVVFLIYLAITKYVPVLVNQTTQMINSVVDFYQSPHTDTNQVLQFIDQYLEKSNLLS 127

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L +  S+               I R+    G + L + +S I      FFF  +   ++
Sbjct: 128 QLQNGASM---------------ILRYIQDIGAVGLSFVMSFILS----FFFMIEKKKMA 168

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                  +  F  +++ I     K + +          IA+   ++   A  + G     
Sbjct: 169 DFSKLFLKSDFDWFFQDIYYFANKFVNTFGVVMEAQFFIAVVNTVITTLALAIIGFTQLP 228

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +L ++  I++++P    I     +S     +G + +   +     I        L P  +
Sbjct: 229 SLAIMIFILSLVPVAGVIISCIPLSFIAYSQGGLNDVIYILALITIVHLFESYVLNPKFM 288

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
               +LP   TF  L+   R  G+ GL +G  +      + K   +   +    +  N
Sbjct: 289 SSKTELPIFYTFVILLVSERLFGVWGLIVGIPVFTFFLDVLKVKPIRGLKRLPNVKKN 346


>gi|256395660|ref|YP_003117224.1| hypothetical protein Caci_6535 [Catenulispora acidiphila DSM 44928]
 gi|256361886|gb|ACU75383.1| protein of unknown function UPF0118 [Catenulispora acidiphila DSM
           44928]
          Length = 394

 Score = 76.0 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 88/282 (31%), Gaps = 6/282 (2%)

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             + +     L  +  L +  + +++    +    +P WL +I           K     
Sbjct: 117 AVVLVGFTAVLGGFLALVIPPVSNEITALTKE---IPTWLQEI---HDHHSQLGKIEDRY 170

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
             +      F   +    +       G I +    S   +I    +F     ++      
Sbjct: 171 HLVAKAKAQFASGDASGKLVSGLLTAGQIIVGAVTSTFIVITLTIYFLVGMPAVRDFGLR 230

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                       ++  +   +    L     +   GL         GVP    LG + AI
Sbjct: 231 FVSARNRPRSADLTNQILLQVGRYMLANLATSALAGLATFIWCMAVGVPYAAVLGFLVAI 290

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           M M+P        A    + +  ++  A    ++  +  F  D  + P  +   +++  +
Sbjct: 291 MDMVPVIGSTVGGAAVSLVALSVSVPTAVASLVFYTLFRFAEDHLINPLTMKYTVRIHPI 350

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            T   ++     MGL+G  I       I++I +E +   ++ 
Sbjct: 351 ATMIAVLVMGTLMGLVGALIAVPTATAISLILQEVVFPKRDQ 392


>gi|300112910|ref|YP_003759485.1| hypothetical protein Nwat_0191 [Nitrosococcus watsonii C-113]
 gi|299538847|gb|ADJ27164.1| protein of unknown function UPF0118 [Nitrosococcus watsonii C-113]
          Length = 356

 Score = 76.0 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 48/356 (13%), Positives = 112/356 (31%), Gaps = 20/356 (5%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           +PQ +   +++ +  +++  +    APVL++L+I +    I                 + 
Sbjct: 14  DPQVVGLAILLAVGFITVVLMGRMLAPVLASLVIAYLLEGIIGYMERWHCPR-WLAVTLV 72

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSK----VVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++ M      +  L      ++ E   +    +    +  + +P +  ++       +L
Sbjct: 73  FITFMAALFSVIFGLLPLLSQQLAEFFQQLPIMIARGQELLLSLPEYYPNLFSDEQVYDL 132

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                S                    +   +    M  +   + ++ M + +FFF +D  
Sbjct: 133 MNALRSELAQW------------GQKVLSVSLASVMGLMTLAVYLVIMPLLVFFFLKDKA 180

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +   L+            ++   V   I +   G  +  +    V    +   G+   +
Sbjct: 181 RLIGWLEQYLPR-ERKLAAQVWHDVDFQIGNYVRGKFLEILIVCAVTAITFTFMGLQFSM 239

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L V+  +  +IP  GA  +   V+     + G   +   L     I   +    L P L
Sbjct: 240 LLSVLVGLSVIIPYIGAVAATLPVAFVAYFQWGFSIDFAYLLGAYGIIQALDGNVLVPLL 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
               + L  +     ++      G  G+F    L  L+  + K         +  I
Sbjct: 300 FAEVVDLHPVAIIVAILVFGGFWGFWGIFFAIPLATLVQAVLKAWPSLPPPEESAI 355


>gi|227543966|ref|ZP_03974015.1| possible permease [Lactobacillus reuteri CF48-3A]
 gi|300909575|ref|ZP_07127036.1| possible permease [Lactobacillus reuteri SD2112]
 gi|227186053|gb|EEI66124.1| possible permease [Lactobacillus reuteri CF48-3A]
 gi|300893440|gb|EFK86799.1| possible permease [Lactobacillus reuteri SD2112]
          Length = 372

 Score = 76.0 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 39/359 (10%), Positives = 118/359 (32%), Gaps = 30/359 (8%)

Query: 6   LNPQGIMRWM---IMFIILVSL--------YFLKGF-------FAPVLSALIIGFTSWPI 47
           ++ Q    W+   ++ + + +L        +  + F       F P++ +  + +   P+
Sbjct: 1   MSKQKFYHWLFWPLLLLTVATLIWMCTKIQFIFQPFLTFVSVVFVPLIISGFLYYMLNPV 60

Query: 48  YSSF----ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG 103
              F    I +   +    +++  + ++ + +  +  L    + E+  LV       ++ 
Sbjct: 61  LKLFMKIKIGRFHMNRGIASLLIVLLLIVILVGGIAMLIPPVVKEISTLV-------RNM 113

Query: 104 IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF-LKTNGIDFIPRFASRFGMIFLD 162
                 +  +               +    +   +        +  +         +  +
Sbjct: 114 PQTVTGIQHLINDTIEHSFLQNVDLNAYYRQFDHQLAGYAQKVLQGLSTRVGDIIGMLTN 173

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
             +  I + + LF+  +DG  +   +              +   +   + S   G  I  
Sbjct: 174 VTVVTITVPVMLFYMLKDGSKLIPSIQKWLSPHHAKEVNDLLGKMNSTLSSYISGQMIEC 233

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF 282
           +  G+     Y + G P  + LG++  +  +IP   P    A ++++ +         + 
Sbjct: 234 LFVGVFTSIGYVIIGQPLAIVLGIVAGLTNIIPYIGPYIGIAPALFVALTMAPNKIIWVI 293

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +   +   +    + P ++G  +++  L     L+      G+ G+ +     A+I  +
Sbjct: 294 VVVIVVQQVDGNIVYPNIIGKTLQIHPLTIIMLLLAAGHIAGIGGMILCIPFYAVIKTV 352


>gi|297565745|ref|YP_003684717.1| hypothetical protein Mesil_1315 [Meiothermus silvanus DSM 9946]
 gi|296850194|gb|ADH63209.1| protein of unknown function UPF0118 [Meiothermus silvanus DSM 9946]
          Length = 369

 Score = 76.0 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 105/333 (31%), Gaps = 14/333 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
              +       + + P+   F  +K         +  ++V    +V L          + 
Sbjct: 41  IVTLAIGFGFAYLTSPVVRWFERRKLPR-----WLGVLAVYVGLLVFLALASALLAETVG 95

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
                V           +WL D P  + A  L  +  S      +  +  L+  G   + 
Sbjct: 96  RFSQMVGKLPATMGVALQWLHDTPANLGAVPLPEEVRSLLSEFGLNLQRILEGFGQSLLG 155

Query: 151 RF--ASRFGMIFLDYCLSII-------FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                   G   +D+ + ++         ++   +   D   I+  L  L    + +   
Sbjct: 156 TLQNLLSQGGRLVDFLIGLVGGVAQALVALVISIYLLYDLPRIASALLQLIPKPYQSRTL 215

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +I+R           G   +A   GL +G    L GVP    LG++  +  +IP    I 
Sbjct: 216 EIARKADLAFGGYIRGQLQVAFWVGLTIGVGLALVGVPLAGGLGLLAGVFNLIPYVGVIV 275

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
            T  ++ L             L   +   +    L P ++G    L  +     ++ G  
Sbjct: 276 STVPALLLAATVGWPTVLLTLLVVWLTNQLEGHLLSPRILGSTTNLHPVTVIAAILIGAS 335

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             GLLG  +     A   ++ ++  +  +  +E
Sbjct: 336 LFGLLGALLMVPTAAFAKILIQDYYLKSRLYEE 368


>gi|298368747|ref|ZP_06980065.1| membrane protein [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282750|gb|EFI24237.1| membrane protein [Neisseria sp. oral taxon 014 str. F0314]
          Length = 356

 Score = 76.0 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 55/322 (17%), Positives = 120/322 (37%), Gaps = 10/322 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY-YGMLEM 89
             P + A ++ +   P+      K+ +     A +  +      ++ L  +     + + 
Sbjct: 33  LTPFVIAAVLAYVLNPLVEWLQLKRFKR--GAASMMVMVFALSVLLALTLIIVPMLINQF 90

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             LV+++                +P     +  + +  +      + S T   +  +  I
Sbjct: 91  NNLVARLPQITAFVQNTL-----LPWLSRYAGRYIELDTQSIVGWLQSHTGELSGTLQKI 145

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                +     +    ++  +   L++F  D    SQ +  L    F   + +I+  + +
Sbjct: 146 MPEVMKQSGNVISGVSNLFLLPFLLYYFLLDWRRWSQGISKLVPRRFIDTYSRITGNMDE 205

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIY 268
           V+     G  ++ +  G+V G    L G+ S  A+G+I  I+  IP  GA       ++ 
Sbjct: 206 VLGEFLRGQLMVMLIMGVVYGVGLMLTGLDSGFAIGMIAGILVFIPYLGAFTGLLLATVA 265

Query: 269 LLIKGNIFNATCLF-LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            L++   ++   +  +   I  F+    + P +VG  I L      F L+   + MG +G
Sbjct: 266 ALLQFGTWHGLIMVWVVFGIGQFLESFIVTPKIVGDRIGLSPFWVIFSLMAFGQLMGFVG 325

Query: 328 LFIGPVLMALIAVIWKESIMAI 349
           +  G  L A+  V+ +E   A 
Sbjct: 326 MLAGLPLAAVTLVLLREGAAAY 347


>gi|194290638|ref|YP_002006545.1| hypothetical protein RALTA_A2553 [Cupriavidus taiwanensis LMG
           19424]
 gi|193224473|emb|CAQ70484.1| conserved hypothetical protein, DUF20; putative PERMEASE
           TRANSMEMBRANE TRANSPORT PROTEIN [Cupriavidus taiwanensis
           LMG 19424]
          Length = 357

 Score = 76.0 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 46/316 (14%), Positives = 109/316 (34%), Gaps = 12/316 (3%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
               P L A I  +   P       ++   +        + V  + ++  +      +L 
Sbjct: 33  PVLTPFLFAFIFAYILNPGVDWLQRRRVPRA--------IGVTLMILLLTVVCVMLVLLL 84

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT--NGI 146
           +  L  ++    +    + + L+ +     A          P    ++S+ F  +  + +
Sbjct: 85  IAVLQREIPQVREQLPILLKKLNSVVSPRLAEFGVRVRFDFPGLRNMMSDRFAASPEDLL 144

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +  +    G   +     +  + I +F+   D   + ++++ +    +    ++++  
Sbjct: 145 VVLLNYVKMSGSALITVAGIVFIVPIVMFYLMMDWHMVMRRIEGVVPRRWVPKVRELTNE 204

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
              ++     G  ++ +    +      +AG    V +GV T +   IP         ++
Sbjct: 205 TDALLSQYLRGQILVMVILAAIYSIGLTIAGFDIGVPVGVFTGLAVFIPYIGFGVGLVMA 264

Query: 267 IY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           +   LL  GN +    + +      FI    L P LVG  I L  L   F L+   +  G
Sbjct: 265 VLAALLQFGNWYGLAAVAVVYGFGQFIESFYLTPRLVGERIGLHPLVVIFALLAFGQLFG 324

Query: 325 LLGLFIGPVLMALIAV 340
             G+ +     A++ V
Sbjct: 325 FFGVLLALPTCAVLLV 340


>gi|256847905|ref|ZP_05553350.1| conserved hypothetical protein [Lactobacillus coleohominis
           101-4-CHN]
 gi|256715594|gb|EEU30570.1| conserved hypothetical protein [Lactobacillus coleohominis
           101-4-CHN]
          Length = 366

 Score = 76.0 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 50/361 (13%), Positives = 117/361 (32%), Gaps = 31/361 (8%)

Query: 5   MLNPQGIMRWMIMFIILVSL--------YFLKG---FFAPVLSALIIG----FTSWPIYS 49
           M+  Q  + W I  ++L           +  +    F + V   LII     +   P+ S
Sbjct: 1   MVKKQSFLYWSIELLVLALFIWVCSKIDFVFRPILIFISVVFVPLIISLFLYYMLRPVMS 60

Query: 50  SFISKKEES----STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           + +  +           + +  + ++ + +  +  +    + E+ E++  +    +    
Sbjct: 61  ALMKVRLGRHRIPRGVASFVIVLLLILIVVSVIAAIIPPMINELTEIIKSLPATAKETQ- 119

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
             +W+  +    W   +                  L  +    +    S+ G +      
Sbjct: 120 --KWVVRLSHHPWLKNI------DFNGYYKEMTNQLSKSSETILNGVTSKAGSLIGMLTS 171

Query: 166 SIIFMI---IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
           ++I  I   + LF+  +D       +             K+   +   + S   G  I  
Sbjct: 172 TVIVAITVPVMLFYMLKDSNKFVPSIQKYFSEKHGEEISKLLHQMNTTLSSYISGQAIEC 231

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF 282
           I   +     Y + G P  + LG++  +  MIP   P      ++ + +         + 
Sbjct: 232 IFVAVATSIGYLIIGQPVAIVLGLVAGLTNMIPYVGPYIGITPALMVSLAMAPKKIIWVI 291

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +   I   I    + P ++G  +K+  L     L+      G+ G+ +     A+I  I+
Sbjct: 292 IVVVIVQQIDGNIIYPNIIGRTLKIHPLTIIMLLLAAGNIAGIPGMILCIPFYAVIKTIF 351

Query: 343 K 343
            
Sbjct: 352 N 352


>gi|213854545|ref|ZP_03382785.1| permease PerM [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
          Length = 335

 Score = 76.0 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 46/322 (14%), Positives = 104/322 (32%), Gaps = 14/322 (4%)

Query: 27  LKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
             G  AP+L A+++ +   WP  +   +         +++  + V  L ++  + +    
Sbjct: 15  FSGLLAPLLVAIVLAYLLEWP-TARLQAIGCSRRWAASIVLILFVGILLLMAFVVMPIAW 73

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
              +  +     + N+            P  M A  +     +    +  + ++ +K + 
Sbjct: 74  QQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAGIIDAMAENMRTRMLNMGDSVVKYSL 133

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              +           L   + ++ + + +FF  +D   +   +  +          ++  
Sbjct: 134 ASLV---------GLLTLAVYLVLVPLMVFFRLKDKEQMLNAVRRVLPRNRGLAG-QVWN 183

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTA 264
            + + I +   G  +  +  G+     + L G+   + L V+     +IP  GA +    
Sbjct: 184 EMNQQITNYIRGKVLEMVVVGVATWLGFLLFGLNYSLLLAVLVGFSVLIPYIGAFVVTIP 243

Query: 265 V-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
           V  + L   G        F    I   +    L P L    + L  L     +V      
Sbjct: 244 VVGVALFQFGLGTEFWSCFAVYLIIQALDGNLLVPVLFSEAVNLHPLVIILSVVIFGGLW 303

Query: 324 GLLGLFIGPVLMALIAVIWKES 345
           G  G+F    L  LI  +    
Sbjct: 304 GFWGVFFAIPLATLIKAVVHAW 325


>gi|322372912|ref|ZP_08047448.1| putative membrane protein [Streptococcus sp. C150]
 gi|321277954|gb|EFX55023.1| putative membrane protein [Streptococcus sp. C150]
          Length = 378

 Score = 76.0 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 111/292 (38%), Gaps = 4/292 (1%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELW 123
           ++ +       +   ++ +  + ++ + ++ ++  ++  I  +  WL          + +
Sbjct: 79  VSLLLAFATIGLVFTWVVFTVLPDLIDSINTLISQDRSAINNLINWLLKNKSLQKVIQDF 138

Query: 124 TKHLSHPQSLKILSETFLKT--NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                  + +   S   L+   NG+       +      ++  +SI+F    L    + G
Sbjct: 139 GGVTQVRELINTYSAQLLQQIMNGLTSFLTSLTSLPSTLINLFISIVFSCYVLAGKEKLG 198

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +++ ++      F   +  +  I+    R+ F+  ++ A   G +      +   P  
Sbjct: 199 NQVNRLVEVYLGR-FGKTFHYVVGILNNRFRNFFVYQSLEACILGTLCYIGMRIFDFPYA 257

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             + ++    AMIP         +   L++  ++  A     +  I        + P++V
Sbjct: 258 ATISILIGFSAMIPVVGAYIGVTIGTILIMTHSVTLALLFIAYVVILQQFEGNLIYPYVV 317

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           GG   LP +   F +  G    G+LG+ +   + A +  I K++++  +++K
Sbjct: 318 GGSTGLPGIWVIFAITIGSALGGILGMLVSVPVAATLYQIVKDNVVKREQDK 369


>gi|282600568|ref|ZP_05979072.2| putative membrane protein [Subdoligranulum variabile DSM 15176]
 gi|282572005|gb|EFB77540.1| putative membrane protein [Subdoligranulum variabile DSM 15176]
          Length = 374

 Score = 76.0 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 40/328 (12%), Positives = 102/328 (31%), Gaps = 11/328 (3%)

Query: 31  FAPVLSALIIGFTSW-PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
            +P    +++ +    P              F  V++ + +  +  + L  +       +
Sbjct: 39  LSPFAWGIVLAYVLDIPARFFAEKLFGGKRGFAVVLSYLLLFSVVGLLLSLVVPQLAESI 98

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
              V ++    +       W+    G             +   L    + + K+      
Sbjct: 99  SSFVGRLSTYEKDIQNALDWVRQTFGIDT-----ETLEGYVGELTRELQNWFKSVSGQAA 153

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK----KISR 205
              A     +      + + + +++ +       + + + +      P         +  
Sbjct: 154 QAAADAAAGVAGAAMDAFVTLAVSI-YLLGSKDLLLRAVRTCLRAALPPRQAGSLFSVCT 212

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
           +  +       G  + A+  G+       L  +     + V+  +  +IP   P      
Sbjct: 213 MANRTFSGYIGGQLVDALLVGVETFVLMSLFRLDYAPLIAVLVGVTNIIPVLGPFIGAVP 272

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
              +L+  +   A    L   +   I    + P ++GG   LP L     ++ G    G+
Sbjct: 273 GAVILLLESPLQAVEFVLIILVVQQIDGNFIAPRIIGGATGLPGLGVLLAIIVGGSLFGI 332

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENK 353
            G+ IG   +A+I  + KE++ A  + +
Sbjct: 333 PGMVIGVPTLAVIVTLLKEAVGAGLQAR 360


>gi|291520696|emb|CBK75917.1| Predicted permease [Butyrivibrio fibrisolvens 16/4]
          Length = 259

 Score = 76.0 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 96/216 (44%), Gaps = 7/216 (3%)

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              ++ I    +  G+ F  + ++++  I    +F  +   +        + +F   ++K
Sbjct: 48  AKNMNTIMSTTADVGVAFAQFFIALLLSI----YFLAEKDKLKSGGSRFLKAVFKDQYEK 103

Query: 203 ISRIV---PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
           +S I+    K++    +   I A+  G++      + G+P    + V+ A+  +IP   P
Sbjct: 104 VSYIIKQSDKILNCYIVYNLIDALVVGIINAIFMGIVGLPYAGLVSVVVAVFNIIPTFGP 163

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                +  +LL+    + A    ++ AI   +    ++P L G  + +  L    G+V G
Sbjct: 164 AIGAVIGGFLLLLVEPWYAAAFLIFTAILQTLDGYVIKPKLFGDSLGVSGLWILIGIVTG 223

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            + +G++G+ +    +A++ +I+ + ++   E K++
Sbjct: 224 GKMLGVVGILLAIPTVAILDMIYHKYLLPFLEQKDE 259


>gi|89099562|ref|ZP_01172437.1| hypothetical protein B14911_11272 [Bacillus sp. NRRL B-14911]
 gi|89085715|gb|EAR64841.1| hypothetical protein B14911_11272 [Bacillus sp. NRRL B-14911]
          Length = 352

 Score = 76.0 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 60/336 (17%), Positives = 128/336 (38%), Gaps = 11/336 (3%)

Query: 9   QGIMRWMIMFIILVSL-YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +    W+I  I++ +L YF+     P++ A I      P+      K         +I  
Sbjct: 7   KRFFIWLIGLILIGTLFYFILPVSVPLIVAFITALMLEPLVKLLQGKLNIKRRISVMIVF 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++ +    +   F+    + E  +LV               WL        A+E   K +
Sbjct: 67  IAFVLFIGLSGYFITTKVITEAIKLVENAPEYVNEIN--NAWLDAEEKFTRAAEDLPKDV 124

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFA----SRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +    +TFL     + +   +            +Y +S +  +IALF F  D   
Sbjct: 125 VD--EISNQVQTFLNKTKTELVAYVSIDNVKALLTNIPNYLVSFLVYLIALFLFLIDLPR 182

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + +   +            ++  +  V+   F    ++++    V      +      + 
Sbjct: 183 LRRGAYNHLTEKTADKVSFMTSRLSYVVLGFFKAQFLVSLIIFFVSLVGLLIIAPDIALV 242

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           + ++  I+  IP  G+ +     +++ L+ G++   T L +  A+ L I+ +T+ P ++G
Sbjct: 243 MALVLWIIDFIPIIGSIVILGPWALFHLLTGDVVLGTKLAVLAAVLL-IIRRTVEPKVMG 301

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             I L  L T   +  G++ +G+LG  IGP+++   
Sbjct: 302 THIGLSPLSTLIAMYLGLKLLGILGFIIGPLILIAF 337


>gi|254282735|ref|ZP_04957703.1| permease, PerM family [gamma proteobacterium NOR51-B]
 gi|219678938|gb|EED35287.1| permease, PerM family [gamma proteobacterium NOR51-B]
          Length = 357

 Score = 76.0 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 55/351 (15%), Positives = 123/351 (35%), Gaps = 12/351 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  +I+   LV L  +     PVL AL++ +    + +   ++    S        +
Sbjct: 17  ESVVLLIILVSALVVLITIGDVLTPVLVALVLAYLMQGVANQLAARGVPQS--------L 68

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    ++ +   F      +  +  ++    +    +   +S++  G+ A         
Sbjct: 69  GVWIALLLFMGVFFGSSFGLVPLIWQQLASLLRESPEMIEQVSNLLNGLAAEYPQLISQQ 128

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             + L    +  L   G   + R  SR     L   + ++ + + +FFF +D   I    
Sbjct: 129 QVEELLGGIQRELAQFGQVVLARSLSRI-PGLLALLVYMVLIPMLVFFFLKDQQKIFAWF 187

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S      P   ++I + + + + +   G  I  I  G     A+ + G+     LG++ 
Sbjct: 188 SSFLPERRPLL-QRIWQEMDQQVSNYVRGKVIEIIIVGSTSYLAFTIMGLNYAALLGLLV 246

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIK 306
            +  +IP  GA +    V +    +  + +         + + ++D   L P L    + 
Sbjct: 247 GLSVIIPYIGATLVTVPVVMVAYFQWGVGSELYAITAAYLVIQLLDGNVLVPLLFSEAVN 306

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           L  +     ++      GL G+F    L  L+  +       +       S
Sbjct: 307 LHPVAIIIAVLFFGGIWGLWGVFFAIPLATLVNAVLCAWPARLDSPPNPAS 357


>gi|146319385|ref|YP_001199097.1| permease [Streptococcus suis 05ZYH33]
 gi|146321590|ref|YP_001201301.1| permease [Streptococcus suis 98HAH33]
 gi|253752410|ref|YP_003025551.1| hypothetical protein SSUSC84_1565 [Streptococcus suis SC84]
 gi|253754236|ref|YP_003027377.1| membrane protein [Streptococcus suis P1/7]
 gi|253756170|ref|YP_003029310.1| membrane protein [Streptococcus suis BM407]
 gi|145690191|gb|ABP90697.1| probable permease [Streptococcus suis 05ZYH33]
 gi|145692396|gb|ABP92901.1| probable permease [Streptococcus suis 98HAH33]
 gi|251816699|emb|CAZ52341.1| putative membrane protein [Streptococcus suis SC84]
 gi|251818634|emb|CAZ56469.1| putative membrane protein [Streptococcus suis BM407]
 gi|251820482|emb|CAR47224.1| putative membrane protein [Streptococcus suis P1/7]
 gi|319758816|gb|ADV70758.1| permease [Streptococcus suis JS14]
          Length = 376

 Score = 76.0 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 52/337 (15%), Positives = 122/337 (36%), Gaps = 7/337 (2%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L G    +    I  F           + E+ S       +++++ + I   L +    +
Sbjct: 35  LLGSMNSLFIGAIFAFILNVPMKKLEDQFEKISFLKKSKRSLAIVGVLIGFALIVTGLVV 94

Query: 87  LEMKELVSKVV-LANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS--LKILSETFLKT 143
           + +  LV+ V  L +     +P+ ++ +   + ++ L +  +    +  L  L    L +
Sbjct: 95  IVLPTLVTTVSELVSVSSTAIPKSVNALTNFLESNGLLSGQIGDQIASFLDQLKNLTLIS 154

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           + +  I               +++I               +        +   P    ++
Sbjct: 155 SLVTPILSGLVSNVTGIFSNTMTLIMAFFFTLAILGSKEHLQAMTRKFLQATLPEKAVRV 214

Query: 204 SRIVPKVIRST----FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
              + +VI  T     +   + A   G ++  +Y L+G+P     G++  +++ +P   P
Sbjct: 215 VNYIGEVIVDTYDRFLMSQIVEACIIGTLVFVSYSLSGIPYASMAGILAGVLSFVPYIGP 274

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
            S   +S   +   N   A        I   I    + P +VG  + LP L T    + G
Sbjct: 275 FSACLISALFVAVQNPLLALWSIALFQIIQLIEGNVIYPRVVGQSVGLPTLFTLAAALIG 334

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
               GLLG+     + A++  + +E + +  + ++++
Sbjct: 335 GNLFGLLGMVFFTPIFAVVYRLVREWVASRLKKQDEL 371


>gi|262204300|ref|YP_003275508.1| hypothetical protein Gbro_4482 [Gordonia bronchialis DSM 43247]
 gi|262087647|gb|ACY23615.1| protein of unknown function UPF0118 [Gordonia bronchialis DSM
           43247]
          Length = 390

 Score = 76.0 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 56/364 (15%), Positives = 120/364 (32%), Gaps = 22/364 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGF------FAPVLSALIIGFTSWPIYSSFISKKE 56
              +       W ++ I       L+ F        PV  A++      P+  +   +  
Sbjct: 2   HPTVRAAAEWSWRLLIIAAAGFVLLRLFTEFEEVLVPVALAILGSAMLVPVVDALDRRGV 61

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPG 115
             S     +A + V+ + +  L  +  + + E    V ++    +  +    +WL D P 
Sbjct: 62  PRS-----LAVLGVIVVALGILAAVLTFVVREFIRGVPELADQVRVTVDRTKQWLVDGPL 116

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
            + + ++          ++   +    T+G       AS      L     +IF +    
Sbjct: 117 HVDSEQVRNAGSDVLNVVQNNQDKV--TSGALATATTASEIVTGALLTLFLLIFFLY--- 171

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
                G  I + L         +            +        ++A+ + + +G    +
Sbjct: 172 ----GGGQIWRFLVKGVPSGTRSRVWAAGIAGFGTLVGYVRATVVVALVDAIGIGIGLAI 227

Query: 236 AGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
             VP  + L  +  + A IP  GA +S T   +  L+      A          + +   
Sbjct: 228 LRVPLALPLASLVFLGAFIPIVGALLSGTLAVLVALVTQGWIAAVITLAIVIGVMQLESH 287

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            L+PFL+G  ++L  +     +  G+ + G++G  +   L+A +    +       E   
Sbjct: 288 VLQPFLLGRSVRLHPVAVVLAIAAGLVSAGIIGGLLAVPLIAFLNTAIRHLSADEDEPSA 347

Query: 355 KISS 358
            I S
Sbjct: 348 AIDS 351


>gi|255659544|ref|ZP_05404953.1| conserved hypothetical protein [Mitsuokella multacida DSM 20544]
 gi|260848098|gb|EEX68105.1| conserved hypothetical protein [Mitsuokella multacida DSM 20544]
          Length = 351

 Score = 76.0 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 97/283 (34%), Gaps = 1/283 (0%)

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           L      G   +  L   +++++       R+++D P      +       +        
Sbjct: 58  LAAAIVLGTFLLICLGLVLLVSSTFIPTFTRFVTDFPQITEKLQQMPLIHDNAYLTDEFE 117

Query: 138 ETFLKTNGIDF-IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           + +L+         + +    +      + ++ ++   F+  +DG  I   L SL     
Sbjct: 118 QFWLELKAASVDALKSSLTVLLSIFSKFIDMVIILFVTFYLLKDGDDIKVYLASLFPTRD 177

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
            +    +   +   +R+      +I      V+   Y    +P      +++ I   +P 
Sbjct: 178 YSRVLALFNRILSALRTYICSQLVICCLTATVVFLYYTARSLPYASVFAMVSGISEFVPV 237

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             P   +   I L    + + A     +  I   +    + P L+G  + L  +    G+
Sbjct: 238 LGPTVASIFGILLTATVDPWIAIQTAGFYLILTQVNHNAVYPTLIGKSLNLHPVAIILGI 297

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           + G   +G  G+F+    + +  ++ ++      E  +K+ ++
Sbjct: 298 ILGGEVLGAAGMFLAVPFIVICKLVIEDIYKDRMETIKKLRAS 340


>gi|225378516|ref|ZP_03755737.1| hypothetical protein ROSEINA2194_04184 [Roseburia inulinivorans DSM
           16841]
 gi|225209619|gb|EEG91973.1| hypothetical protein ROSEINA2194_04184 [Roseburia inulinivorans DSM
           16841]
          Length = 280

 Score = 76.0 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 73/196 (37%)

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                       + +S  F    LF   +    + + + +            I  +  + 
Sbjct: 50  SAVGSIASGLATFFISFSFACYILFQKEKLHLQVRKVIFAFIPKQKADAILNICSLTYRT 109

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
             +   G  + A+  G++      +  +P  + +G++ A  A++P        AV  +L+
Sbjct: 110 FANFLAGQCLEAVILGMMFVITLSILKMPYALLIGILIAFTALVPIFGAFIGCAVGSFLI 169

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              N   A    +   +   I    + P +VGG + LP +     +  G   MG++G+ I
Sbjct: 170 FMVNPKQAVLFIIVFLLLQQIEGNLIYPHVVGGSVGLPSIWVLAAVTIGGNLMGIIGMLI 229

Query: 331 GPVLMALIAVIWKESI 346
              L+++   I++E +
Sbjct: 230 FIPLVSVFYTIFREFV 245


>gi|226325835|ref|ZP_03801353.1| hypothetical protein COPCOM_03648 [Coprococcus comes ATCC 27758]
 gi|225205959|gb|EEG88313.1| hypothetical protein COPCOM_03648 [Coprococcus comes ATCC 27758]
          Length = 416

 Score = 76.0 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 50/343 (14%), Positives = 123/343 (35%), Gaps = 12/343 (3%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV-----IATVS 69
           +++ +I      +  F      A +I      +      K +E  +  A      I+ + 
Sbjct: 34  VVLGVIKAVWGIIFPFALGGAIAFVINVPMSFLEKKLFGKAKEKGSKAAGKLARPISLLL 93

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMW-ASELWTKHL 127
            + L +  ++ + +  + ++   +  ++ +    IP  + W+ +         +L  +  
Sbjct: 94  TIVLVVGVIVLVMFGLIPQLTATIGSLMNSIADFIPQMQSWVREFTHNNREIMDLVNQVE 153

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            +P        + L     +F+    +  G I        I    A +  ++    +  Q
Sbjct: 154 FNPNKAIQWGMSILGNGAGNFMNTTMTAVGSIVSGVTTFFIAFSFACYILFQK-EKLHVQ 212

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTF----LGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +     P    ++   V  +   TF     G  + A+  G +      +  +P  + 
Sbjct: 213 VRKVFFAFIPKRKAEVILEVCSLTYRTFANFLTGQCLEAVILGSMFVITLSILKMPYALL 272

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           +G+I +  A+IP         +   L+   +   A    L   I   I    + P +VG 
Sbjct: 273 IGIIISFTALIPIFGAFIGCVLGGLLIFMVSPKQAILFILVFLILQQIEGNLIYPHVVGN 332

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            + LP +     +  G   +G++G+ I   L++++  +++E +
Sbjct: 333 SVGLPSIWVLAAVTIGGNLLGIVGMLIFIPLVSVLYTLFREYV 375


>gi|300309868|ref|YP_003773960.1| membrane transport protein [Herbaspirillum seropedicae SmR1]
 gi|300072653|gb|ADJ62052.1| membrane transport protein [Herbaspirillum seropedicae SmR1]
          Length = 626

 Score = 76.0 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 53/340 (15%), Positives = 116/340 (34%), Gaps = 20/340 (5%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             + L  LYF +   AP+  A I      P+     +    +    A+++ + V    + 
Sbjct: 21  AAVALGMLYFGREILAPLAVAGIASLIILPLVRKLDA-LGLNRAGAAIVSVLLVGSCLVA 79

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             + L +  +    +L  +   A Q  +   R +++ P     +EL +  +  P      
Sbjct: 80  LAVVLAFQLVSVTSDL-PQYREAIQDKVESVRAMTERPFARLEAEL-SAVIPQPVPETTR 137

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI------------IALFFFYRDGFSI 184
           S               A     + +   +  +F +            + L F   +  S+
Sbjct: 138 SGKKASHAAATAPAPAAEADTRMSVRGAIKRLFALAWGPIGQAGIVLVLLVFILLEQESL 197

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            ++L  L      +   +      + +   F    ++ +  GL++G+     GVP  V  
Sbjct: 198 RERLIRLAGLTEMSRTMQALGDAAEGVSRFFFSQFLVNLAFGLIMGAVLAAGGVPHAVLW 257

Query: 245 GVITAIMAMIPGGAPI---SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           G +  ++  +P    +      A+ I  +  G     + L  +G +E+ +    + P + 
Sbjct: 258 GTLAGVLRFVPYLGALASGVMIAIFIAAIDPGWWLALSFLAFYGCLEVIVA-NFIEPRIY 316

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAV 340
           G    L  L      +      G +GL +  P+ + L+  
Sbjct: 317 GHSSGLSPLAVIVSALFWGSLWGPIGLLLSTPLTLCLVVA 356


>gi|146342802|ref|YP_001207850.1| hypothetical protein BRADO5979 [Bradyrhizobium sp. ORS278]
 gi|146195608|emb|CAL79635.1| Conserved hypothetical protein; putative membrane protein, membrane
           transport protein [Bradyrhizobium sp. ORS278]
          Length = 660

 Score = 76.0 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 56/355 (15%), Positives = 108/355 (30%), Gaps = 29/355 (8%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +   II+  LYF +    PV  A+++ F   P+ +     +         +A VSV+ L
Sbjct: 25  ALFAVIIIALLYFGRDILVPVALAILLSFVLAPLVAQLQRLRAPR-----GLAVVSVVFL 79

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH-PQS 132
             V +  L      ++ +L S++           +   D   G    E  +  L    + 
Sbjct: 80  AFVLIFALGSLLATQLTQLASELPNYQSTMSNKIQSFRDTKAGRGTLERASDMLRDLGKE 139

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMI---------------------FLDYCLSIIFMI 171
           L    E              ++    I                      +    +   +I
Sbjct: 140 LDKPKEPEAPRPAGGLRGNSSTPVAPIPVEVRQPDPGALDSLRTLISPLIHPLATTGIII 199

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
           I + F       +  +L  L                   +   FL    +  G G+V+G 
Sbjct: 200 IFVIFILLQREDLRNRLIRLAGSSDLQRTTAALDDAAYRLSRLFLTQLALNGGFGVVIGL 259

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL--FLWGAIEL 289
             WL G+PS +  G++ A +  +P    +   A  + L    +      +       +  
Sbjct: 260 GLWLIGIPSAILWGILAAALRFVPYIGAVIAAAFPLALAAAVDPGWTMLIWTLALFVVVE 319

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            ++   + P + G    L  +             G +GL +   L   + VI + 
Sbjct: 320 PLLGHVIEPMVYGRSTGLSPVAVVVSAAFWTALWGPIGLVLATPLTVCLVVIGRH 374


>gi|16330887|ref|NP_441615.1| hypothetical protein sll1166 [Synechocystis sp. PCC 6803]
 gi|1653381|dbj|BAA18295.1| sll1166 [Synechocystis sp. PCC 6803]
          Length = 367

 Score = 76.0 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 45/294 (15%), Positives = 109/294 (37%), Gaps = 6/294 (2%)

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +++  +  +    +   G+  +  + +++   +Q          +    +  S L+    
Sbjct: 68  LAIFAVITISFALIALGGITLIPLMGNQLGNLSQDIPRWLSGSQEHLANLKNSTLFLTLD 127

Query: 128 SHPQSLKILSETFLKTNGIDF--IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +   ++  L +    T   +   I + + +     +   +  + +++   F    G +  
Sbjct: 128 NAGVNVDDLFQKAYLTLSKELDRIGQISLKVLTETIGGVVDTLVILVLTIFLLVGGDTFW 187

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           Q + S        + KKI +   ++ R  F+   I+A G  +     +   G+P  +   
Sbjct: 188 QGILSWLPS---PWEKKIPQYAGEIFRDYFISRLILAAGSSMARLVVFMALGIPYSILFA 244

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
               + ++IP    +     ++ LL+KG    A   F+   +   I D  + P L+G  I
Sbjct: 245 FSLGLASLIPFAGAVVTLIGTLVLLLKG-WVVAVKFFVSAIVIDQITDNGVAPKLMGDKI 303

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            L  +     +  G    GLLG+ +   + ++I  +  +      EN+E  +  
Sbjct: 304 GLNPVWILISIFIGAEIAGLLGVLLAVPIASVIKKVIDDMRAGKTENEEIDTEE 357


>gi|28378015|ref|NP_784907.1| transport protein [Lactobacillus plantarum WCFS1]
 gi|254556222|ref|YP_003062639.1| transport protein [Lactobacillus plantarum JDM1]
 gi|300767941|ref|ZP_07077849.1| permease [Lactobacillus plantarum subsp. plantarum ATCC 14917]
 gi|308180196|ref|YP_003924324.1| transport protein [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|28270849|emb|CAD63754.1| transport protein [Lactobacillus plantarum WCFS1]
 gi|254045149|gb|ACT61942.1| transport protein [Lactobacillus plantarum JDM1]
 gi|300494482|gb|EFK29642.1| permease [Lactobacillus plantarum subsp. plantarum ATCC 14917]
 gi|308045687|gb|ADN98230.1| transport protein [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 397

 Score = 76.0 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 106/320 (33%), Gaps = 9/320 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFIS----KKEESSTFLAVIATVSVMCLFIVPLLFL 81
           FL   F P+L +  + +   P+          K   S T    I  V +  L +   + L
Sbjct: 40  FLSVVFMPILISGFLFYMLNPLVKLLTKVHYKKFRISRTGAVAIVFVLLFGLLVWGAVSL 99

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + ++ +L+  +             L +    +   ++ +        +   S+ FL
Sbjct: 100 LPRLVSQVTQLIYNLPSIATEMQKAATKLINNSSVLKRIDISSYTKQFNGEISKYSQNFL 159

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            +     +   ++   +  +   + ++     LF+  +D       +             
Sbjct: 160 SSLSSSVVTVISTITSVTIMAITIPVV-----LFYMLKDSEKFIPAISRFLPKKQRPEVI 214

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            + + +   I S   G  I  +  G      Y L   P  + LGVI  +  +IP   P  
Sbjct: 215 GLLQKMGDTISSYISGQVIECLFVGTFTAIGYMLISQPYGLLLGVIAGLTNIIPYVGPYI 274

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
             A S+ +    +      + +   I   +    + P ++G  +K+  L     L+    
Sbjct: 275 GIAPSLIVAFTKSPMQVVYVIIVVVIVQQVDGNLIYPNIIGRTLKIHPLTIIILLLAAGN 334

Query: 322 TMGLLGLFIGPVLMALIAVI 341
             G+LG+ +     A++  +
Sbjct: 335 IAGILGMILAIPFYAVVRTV 354


>gi|332187090|ref|ZP_08388830.1| hypothetical protein SUS17_2225 [Sphingomonas sp. S17]
 gi|332012790|gb|EGI54855.1| hypothetical protein SUS17_2225 [Sphingomonas sp. S17]
          Length = 364

 Score = 76.0 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 79/227 (34%)

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
               +      S       + +          + +  S       ++ L+ + +++   F
Sbjct: 103 PILLDQLAGWASQSPVGAKIVDAVRAAYAGSRVAQDISGIVSGAGEFVLNCLLLLVGALF 162

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
           F  D     +    L  H      +         +R       I     G+++G    +A
Sbjct: 163 FAADPKVYERGFLLLIPHSMRPAIEDALFDTESTLRLWLRAQLIQMTTMGVLVGIGLGIA 222

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           GVPS  ALG++T +   +P   PI+    ++ L  +G         +  A+   I    +
Sbjct: 223 GVPSAAALGLLTGLSEFVPYVGPIAAMLPALGLAAQGGNGAVIGTLVTFAVVRLIQTNAI 282

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            PF+    + +P   T F ++      GL GLF    ++ ++  + +
Sbjct: 283 TPFVTSRVVAIPPAITLFAIIAIGTIFGLFGLFFSAAILVVVFTLIR 329


>gi|312143377|ref|YP_003994823.1| protein of unknown function UPF0118 [Halanaerobium sp.
           'sapolanicus']
 gi|311904028|gb|ADQ14469.1| protein of unknown function UPF0118 [Halanaerobium sp.
           'sapolanicus']
          Length = 348

 Score = 76.0 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 46/305 (15%), Positives = 103/305 (33%), Gaps = 10/305 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L  + I +   P+   F+ K  +      ++   +++ L      F       E++
Sbjct: 41  IIPSLLGIFIYYLLRPL-VRFLHKYIKYKNLSILLTITALLILISFITYFAGNIIYTEIQ 99

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L+  +       I +   +SDI    +  EL          ++     F +  G     
Sbjct: 100 RLIRFLSDYENIAIRISELISDIEEIGFLEEL---------DIESRLIQFARNVGNRLTD 150

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                           +      + +F +D   + ++L  L         K I + + ++
Sbjct: 151 YDFVGIFDSLAQMFTIVFLTPFIVIYFLKDDKLLFEKLIKLVPKDNQETVKVIFKKIDRI 210

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
                    ++    G ++   Y   G+P+ + L  I AI ++IP   P    + ++++ 
Sbjct: 211 FGVYMPSQLLVGAISGTIMFIGYTFIGMPNALGLSFILAIASIIPVIGPAIGVSPAVFIA 270

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +  +      + +   I     +  +RP L GG +    +   F +V      G+LG  +
Sbjct: 271 LTTSWVMLIQVAVLMTIVQLFENNVVRPILQGGMLNTHPIAIIFSIVIATLLFGILGALV 330

Query: 331 GPVLM 335
              + 
Sbjct: 331 AVPIY 335


>gi|320526967|ref|ZP_08028156.1| hypothetical protein HMPREF9430_00255 [Solobacterium moorei F0204]
 gi|320132552|gb|EFW25093.1| hypothetical protein HMPREF9430_00255 [Solobacterium moorei F0204]
          Length = 380

 Score = 76.0 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 58/329 (17%), Positives = 127/329 (38%), Gaps = 5/329 (1%)

Query: 31  FAPVLSALIIGFTSWPIYS----SFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
            +P +  + I F   P+      S++ K +       VIA+   + + I+ L   F   +
Sbjct: 48  LSPFIYGIGIAFLLNPLRKIIEYSWLGKAKLKPRTKKVIASFGALFIGIIMLFVFFSILI 107

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK-TNG 145
            +M   +   + + +  +   R   +         L T +    + + +L +      + 
Sbjct: 108 PQMISSIQTFLSSFEGYVDSARNFFESNNFFSDDLLKTLNPVIDKGVSMLGDWVSNIASS 167

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           ++ I  ++  F    +++ + +I  +  L         I + L +L          + +R
Sbjct: 168 LNAILMYSVIFAKSVMNFLIGMIIALYILLDEINLKRQIKKVLYALLPEKTTKSILRTTR 227

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
           +      S   G  + ++  G++         +P    + V+  +  MIP   P      
Sbjct: 228 LTINTFNSFVAGKAVDSLIIGILCYIILSFMKMPYTPLISVVVGVTNMIPVFGPFLGAVP 287

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           SI +L+  + F A    ++  I   +    + P ++GG + LP L   F ++ G    G+
Sbjct: 288 SILILLLVDPFKALEFSIFVLILQQVDGNIIGPRILGGAVGLPTLYVMFAIIIGGALFGI 347

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKE 354
           +G+FIG  + ++I V+  E I    + K 
Sbjct: 348 VGMFIGVPVFSVIFVLVSEFIHRQLDRKN 376


>gi|255027621|ref|ZP_05299607.1| hypothetical protein LmonocytFSL_16972 [Listeria monocytogenes FSL
           J2-003]
          Length = 345

 Score = 76.0 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 115/361 (31%), Gaps = 26/361 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
            + L  + + R  +  +I   LY L+     +L   I  +    + +  + +       +
Sbjct: 5   SSFLQNRSVRRVGVFILIAFVLYLLRSQMNIILLTFIFSYLITRLENFILRRISIYRQII 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    +  + I   +        ++ +LV                             
Sbjct: 65  VLLLYALIAAVIIFVFVKYIPVLADQINQLVKFGNTFLTT-------------------- 104

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
              +      +  L+  F      +        +        +++   ++   FF     
Sbjct: 105 -DSNNDFINYIVSLANQFDIMKYTEQGVSMILTYLTNVGTVLMNVFIALMLSLFFSLGKE 163

Query: 183 SISQQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            +    +          +++                    IIA+   ++   A W+ G P
Sbjct: 164 HLVSFTNQFSTSKIGFIYEEVKFFGSKFVATFGKVIEAQFIIALVNAILTTIALWILGFP 223

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             + L ++  ++ +IP  G  IS   ++I     G +     + +   I   +    L P
Sbjct: 224 QLMTLSIMVFLLGLIPVAGVIISLVPLTIIGYSIGGVEYIFYILVVVIIIHALESYVLNP 283

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKEKIS 357
            L+     LP   TF  L+ G    G+ GL +G PV+M  + V+   +   I++ K+ IS
Sbjct: 284 KLMSAKTNLPVFYTFIILIFGEHFFGIWGLIVGIPVVMFFLDVLGVTNQEEIEQPKDTIS 343

Query: 358 S 358
            
Sbjct: 344 H 344


>gi|229016266|ref|ZP_04173214.1| UPF0118 membrane protein [Bacillus cereus AH1273]
 gi|229027023|ref|ZP_04183340.1| UPF0118 membrane protein [Bacillus cereus AH1272]
 gi|228734281|gb|EEL84958.1| UPF0118 membrane protein [Bacillus cereus AH1272]
 gi|228745037|gb|EEL95091.1| UPF0118 membrane protein [Bacillus cereus AH1273]
          Length = 257

 Score = 76.0 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 76/205 (37%), Gaps = 8/205 (3%)

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
             G D I ++ +  G +     LS I  +    FF  +   I        +     ++ +
Sbjct: 45  EQGADVIYQYLAGIGKVSSQMFLSFILSL----FFLLEKERIIAFTSKFKDSKLSFFYNE 100

Query: 203 ISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GA 258
           I+    K +RS         +IA+   ++   A WL G P  + L ++  ++ +IP  G 
Sbjct: 101 IAYFGQKFVRSFGKVIEAQFLIAVINCILSVIALWLLGFPQLLVLALMIFLLGLIPVAGV 160

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            IS   + I     G +     + ++  +        L P  +     LP   TF  L+ 
Sbjct: 161 IISLFPLCIIAYNVGGMTYVVYILIFITVIHAFESYFLNPKFMSAKTNLPIFYTFIILIF 220

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWK 343
                G+ GL IG  +   +  ++ 
Sbjct: 221 SEHFFGVWGLIIGIPIFIFLLDVFD 245


>gi|154245378|ref|YP_001416336.1| hypothetical protein Xaut_1431 [Xanthobacter autotrophicus Py2]
 gi|154159463|gb|ABS66679.1| protein of unknown function UPF0118 [Xanthobacter autotrophicus
           Py2]
          Length = 606

 Score = 76.0 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 51/351 (14%), Positives = 109/351 (31%), Gaps = 29/351 (8%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++ +     I+  LY  +  F P+  A+++ F   P+       +   +  +  +  V+
Sbjct: 20  RLVTFFAAIAIVTVLYLGRDVFVPIAVAILLAFVLAPVIMVLRRIRIPRTAAVVTVVLVT 79

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            +      L+ L     L++ +LV+++    Q+ + +   +  +      S  + + +  
Sbjct: 80  FLG-----LMALGGMIALQVTDLVAELP---QYRMNMRDKIKSLKEAASGSGTFERTMDL 131

Query: 130 PQSLKILSETFLKTNGIDFIPR------------------FASRFGMIFLDYCLSIIFMI 171
            Q L    +      G+                         S      L    +   + 
Sbjct: 132 VQDLSREIDGPQAGQGLAAGATDGRPVLVEVHEPPPGTLGTISAVVTPLLHPLATFGIVF 191

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
           I + F       +  +   L                   +   FL    +    G V+G 
Sbjct: 192 IFVLFILLQREDLRNRFVRLAGAHDLQRTTAALDDAGSRLSRFFLAQVALNASFGAVIGL 251

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF- 290
             W+ GVPS    G+  A++  +P        A+ I L +  +      L       +  
Sbjct: 252 GLWIIGVPSPFLWGLAAAVLRFVPYIGAAIAAALPIGLALAVDPGWTMVLSTVALFLVVE 311

Query: 291 -IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIA 339
            +V   + P L G    L  +             G +GL +  P+ + L+ 
Sbjct: 312 PVVGHVIEPLLYGRSTGLSPVAVIAAATFWTWLWGPIGLLLSTPLTLCLVV 362


>gi|187934668|ref|YP_001885371.1| permease [Clostridium botulinum B str. Eklund 17B]
 gi|187722821|gb|ACD24042.1| permease [Clostridium botulinum B str. Eklund 17B]
          Length = 343

 Score = 76.0 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 114/307 (37%), Gaps = 13/307 (4%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
            I+ +   PI   F +K +      +V+  + ++ +FI  ++ +      E+   +  + 
Sbjct: 44  FILAYIIAPIRDLFQNKFKIKKKVASVLIILIILGMFISCIILIIPELFKEISN-IGVIF 102

Query: 98  LANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFG 157
               + +        +        ++ + +    +L +     L  N +           
Sbjct: 103 DNIANFLEDIYVKFRVDSFPILKSIYNELIEKGNALFLNLSKSLFDNIV----------- 151

Query: 158 MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG 217
            + ++  +S   + + +++F  DG  I  +L  +         KKI + + KV+     G
Sbjct: 152 -LIVENLVSCAVIPVVVYYFLCDGDKIYNKLLFILPTEKREVTKKILKDIDKVLGRYITG 210

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFN 277
              +++  G +      +  V   + + ++ AI+ +IP   PI     ++ + +  +   
Sbjct: 211 QVFLSLIIGFLTFILLMIFKVKFPIWISILNAILNIIPYFGPIFGGVPAVLVALLDSPIK 270

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           A  + +   +   I    L P +      +  +     L+ G +  G +G+ +   +  +
Sbjct: 271 ALWVTIGVFVIQQIEGNILSPKITADSTDMHPVIIIILLLIGDKFGGFVGMLLAVPIGVI 330

Query: 338 IAVIWKE 344
           I V++ +
Sbjct: 331 IKVLYDD 337


>gi|110639302|ref|YP_679511.1| permease [Cytophaga hutchinsonii ATCC 33406]
 gi|110281983|gb|ABG60169.1| permease [Cytophaga hutchinsonii ATCC 33406]
          Length = 365

 Score = 76.0 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 58/329 (17%), Positives = 124/329 (37%), Gaps = 15/329 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +F+    L+  +    P+  + ++     P+ +    KK        ++A +  + L IV
Sbjct: 18  LFVFFYVLFLGQEILVPLTFSWLLAILLNPVVNFLERKKINR-----IVAILLAITLMIV 72

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
               + ++   +    V  +         +        G  W S  +        S    
Sbjct: 73  VTAGILFFIGSQFSMFVDMLPQLKHKSTELAH-----KGLTWLSHTFNITTPKVNSWINE 127

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +          +         +F  + L ++ + I LF FY+    + Q +  L     
Sbjct: 128 QKAKSMEGASGLLGTTLGTVSGVF--FALFLLPVYIFLFLFYK--PLLLQFIAKLFSSDK 183

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                 + +    +I++  +G+ I      ++   A  L G+P  + LGVI AI+ +IP 
Sbjct: 184 HTVVADVLKETKSLIQNYLVGLMIEMCIVAVMNSVALMLIGIPYAILLGVIGAILNLIPY 243

Query: 257 GAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              I   A+ + + L+     +A  +FL   +  F+ +  L P +V   +K+    +   
Sbjct: 244 IGGIVAIALPMIMGLMTDTPASALYVFLAYMLIQFVDNNFLVPKIVASKVKVNAFISIIV 303

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           ++ G    G+ G+F+   L+A++ VI+  
Sbjct: 304 VLIGGTLWGVAGMFLSIPLIAILKVIFDR 332


>gi|317475118|ref|ZP_07934386.1| sodium pump decarboxylase [Bacteroides eggerthii 1_2_48FAA]
 gi|316908762|gb|EFV30448.1| sodium pump decarboxylase [Bacteroides eggerthii 1_2_48FAA]
          Length = 376

 Score = 76.0 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 59/364 (16%), Positives = 130/364 (35%), Gaps = 19/364 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFL----KGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M    +     +R +I+ +I++ L  L         P   A +I +  +P+ + F  K +
Sbjct: 1   MERKKITFDSFIRGVILGVIIIGLLMLLKRLSSVLLPFFIAWLIAYLVYPLVTLFQYKLK 60

Query: 57  ESSTFLAVIATVSVMCLF-IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
             +  +++   +  + +        L    + E   + + ++    HG       + +  
Sbjct: 61  FKNRIVSIFCALFTILIIGAGAFYLLVPPMIQEFGRVQALLIQYFSHGTYNSNVPTSL-- 118

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
               SE    ++      ++ ++  L     + +PR  S                +I L+
Sbjct: 119 ----SEFLRDNIDAKFITELFNKENLLDALKEAVPRLWSLLSDSIDLLFSVFTIFLILLY 174

Query: 176 --FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
             F   D  SI++    L    +  +   I   +   +   F G   +A+  G++    +
Sbjct: 175 VIFILLDYESIAEGWTHLVPIKYRPFTISILNDIKTGMNRYFRGQAFVALCVGILFSIGF 234

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC-LFLWGAIELFIV 292
            +   P  + LG+    + M+P    I F    +  ++K +       + +  AI +FI+
Sbjct: 235 LIIDFPLAIGLGLFIGALNMVPYLQVIGFVPTIVLAILKASDTGGNFWIIIASAIAVFII 294

Query: 293 -----DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
                D  + P ++G    L        L      MG+LG+ I   L  L+   ++  I+
Sbjct: 295 VQAIQDGFIVPRVMGKITGLNPAIILLSLSIWGSLMGMLGMIIALPLTTLMLSYYQRFII 354

Query: 348 AIKE 351
             + 
Sbjct: 355 NKEN 358


>gi|167042757|gb|ABZ07476.1| putative domain of unknown function DUF20 [uncultured marine
           microorganism HF4000_ANIW137G21]
          Length = 361

 Score = 75.6 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 49/333 (14%), Positives = 114/333 (34%), Gaps = 22/333 (6%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +++FI ++++  LK    P++ A ++ F   P       +        A++A   +M  
Sbjct: 30  AVLLFICILAVIHLKVILQPLVVATLLFFLIRPPAQWLEERYGH-----AILAYGILMAG 84

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            I  +L         + E   +    +        WL ++                    
Sbjct: 85  VIAVILVGAQILYASLTEFSDQADSLSAKMSEKIVWLEEL---------------SFYGY 129

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
              +        ++ I   A+ F      +  S + + I L F   +  ++ ++L +   
Sbjct: 130 SFDTSALTNLITVERINDIATGFVGSLAGFTGSAVTVFIFLLFIIVEAETLPRRLRAAFP 189

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                 +  IS      I +       +A+G+ +++       G+P       IT ++  
Sbjct: 190 DEL-DRFSSISENAGAAINTYVSTKASVALGQAILVALLLKWMGIPGWFLWASITFLLDF 248

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +P  GAP+SF    I   I  +   A  +         +  + + P L G  + +  +  
Sbjct: 249 VPYVGAPLSFIPPVILSFILKDPMTAVLITAVLFGNQLVWGQFIEPQLAGQRLDMSPIVL 308

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
              +       G++G+ +G  L  ++ ++ +  
Sbjct: 309 LILVAFWGWAWGIMGMILGVPLAVIMKLVLESD 341


>gi|260575895|ref|ZP_05843890.1| protein of unknown function UPF0118 [Rhodobacter sp. SW2]
 gi|259021821|gb|EEW25122.1| protein of unknown function UPF0118 [Rhodobacter sp. SW2]
          Length = 364

 Score = 75.6 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 47/339 (13%), Positives = 115/339 (33%), Gaps = 14/339 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             +  V L+ L     P +    + +   PI               A I+          
Sbjct: 16  ALVFFVLLWVLGSVILPFVLGGAVAYFLDPIADRLQRLGLSRVAATATISIAM------- 68

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +L +    +  +  L +++         + R +       +         S  +     
Sbjct: 69  -MLIVVLLVLAVIPTLFNQLTALINSAPDIVRKMQAFLTERFPE--LNDRTSTIRQTLQS 125

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               +K  G            +  ++  + I+ + +  F+   D   +  ++D++     
Sbjct: 126 IGDTIKAQGGQLANTLIGS-ALGVVNAVVFIVVVPVVAFYLLLDWDRMVARIDAVLPRDH 184

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               ++++R + +V+ +   G   + +  G     A   AG+   + +GVI   +  IP 
Sbjct: 185 APVVRQLARDIDRVLAAFVRGQLSVCLALGTFYSVALMAAGLQFGLVVGVIAGAITFIPY 244

Query: 257 GAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
              +    ++I L +    G+  +   +    A+  F+    + P +VG  I L  +   
Sbjct: 245 VGALIGGMLAIGLALFQFWGDWVSIGIVGGIFALGQFLEGNVITPRIVGNSIGLHPVWLL 304

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           F L       G +G+ +   + A + V+ + ++   +E+
Sbjct: 305 FALSAFGSLFGFVGMLVAVPVAASLGVLARFAVAQYQES 343


>gi|56421273|ref|YP_148591.1| hypothetical protein GK2738 [Geobacillus kaustophilus HTA426]
 gi|56381115|dbj|BAD77023.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 372

 Score = 75.6 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 98/312 (31%), Gaps = 12/312 (3%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           P+  +   K +        +  + +       +  L    +   + L   V    Q  I 
Sbjct: 48  PLVDALERKAKMPRWLAVSVTLIMLFAAVAGLVTLLVAEIVSGTQYLARVVPEKFQALIT 107

Query: 106 VPRWL---SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD 162
                     IP     + ++    +  Q   + +   +       +  F          
Sbjct: 108 YMETFVADQIIPIYKDLAGMFKSLSAAQQDTIMQNIQAVGKKIGTTVGEFVQSILQNIPQ 167

Query: 163 YCL-------SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
                       IF ++A FF  +D   + +              K +   + + +    
Sbjct: 168 LLAWLPNAATVFIFSLLATFFISKDWHRLMRMAQQWLPTKARTSGKTVFLDLKRALFGFI 227

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGN 274
                +     +++     +  V   + + +I   + ++P  G  I F    IY +  G+
Sbjct: 228 KAQATLISITTVIVLIGLLILRVDYAITIALIIGFVDLLPYLGTGIVFVPWIIYTMASGD 287

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
           I  A  L +   + L    + + P ++   I L  L T   L  G + +G LGL  GPV 
Sbjct: 288 IPFAIGLGVLYVVVLVQ-RQIMEPKVLSSTIGLDPLATLIALFVGFKLLGFLGLIAGPVA 346

Query: 335 MALIAVIWKESI 346
           + +I  +   ++
Sbjct: 347 LVIIRTLHSANV 358


>gi|325103185|ref|YP_004272839.1| protein of unknown function UPF0118 [Pedobacter saltans DSM 12145]
 gi|324972033|gb|ADY51017.1| protein of unknown function UPF0118 [Pedobacter saltans DSM 12145]
          Length = 353

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/346 (13%), Positives = 127/346 (36%), Gaps = 16/346 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+E  +     +  + + ++++  Y       P+L A  I     P++    SKK     
Sbjct: 1   MKELPITVIRSLELLGIVLVILIFYVGASIIMPILLAFFISIMLLPVHRFLRSKKI--PE 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            L+++ ++ ++ +F+  +++ F   + ++     ++     + +               S
Sbjct: 59  ILSIVISILLLAIFLGVIIWFFSAQVTKLINEFDQIKTNVNNHL------------NNLS 106

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                        +         N ++ + +        F  + +    + I ++     
Sbjct: 107 HWIDNKFGFSSKEQTKFINEQSNNILNSLGQILGGAMGSFSGFIVFFGLLPIYIYLMLFY 166

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                + +            K   +    +I++  LG+ I      ++LG    + G+  
Sbjct: 167 KNLFLKFIFMWFSESDHEMVKDSLKESETIIKNYLLGLVIQISYMTVLLGGLMTIFGIKH 226

Query: 241 HVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + + +I AI+ +IP    +      V + L     +     + +  ++  F+ +  L P
Sbjct: 227 GLLIAIIFAILNLIPYIGALFGNIIGVLLTLSATEELSAVITVLIIISVVQFLDNNILMP 286

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +VG  +K+      FG++ G    G+ G+F+   L+A++ +I+  
Sbjct: 287 RIVGSKVKINAFAAIFGVIVGGTVAGIAGMFLALPLIAVLKIIFDR 332


>gi|323342782|ref|ZP_08083014.1| hypothetical protein HMPREF0357_11195 [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322463894|gb|EFY09088.1| hypothetical protein HMPREF0357_11195 [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 368

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 55/341 (16%), Positives = 111/341 (32%), Gaps = 22/341 (6%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +  P +   +I F   P+ S    K        +++  +    L    + ++    +  +
Sbjct: 36  YLMPFIIGFVIAFLLKPVISKLTKKIGNQKG-SSLLVVILFYILLAAAIFWILVAVIAGI 94

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           +     V    Q  +         P            + +     I     +  + +  I
Sbjct: 95  QNFAKAVPSFYQTTLS--------PAIESIIVWVEGAVVNLDPDVIDIIESIGRSVVQSI 146

Query: 150 PRFASRFGMIFLDYCLSIIFMI-----------IALFFFYRDGFSISQQLDSLGEHLFPA 198
                      +++   +I  I           I+ FFF  D   I   +  +       
Sbjct: 147 DGIFKGISGGTINFITRLISSIPSVLISILIAIISSFFFTLDYQGIVSSVMGMIPIKQRT 206

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-G 257
               I   +  V+         +     + L  A+++ G+ + V L  + AI+ ++P  G
Sbjct: 207 LILDIKDGLISVLGKYLRAYAKLMSLTFVELSFAFFILGIHNPVGLAFMVAIIDILPVLG 266

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
                    I  LI GN      L +   I + ++   L P +VG  I L  L T   + 
Sbjct: 267 TGTVMIPWFIIELIMGNTPLGIGLMI-TYIVITVIRNILEPKIVGDQIGLHPLATLILIY 325

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            G++  G +GLF  P+   ++  +  E  + I    E+ + 
Sbjct: 326 VGLKMFGFIGLFALPISATILKTLHDEGKINIFRRTEEPTE 366


>gi|88811404|ref|ZP_01126659.1| hypothetical protein NB231_11734 [Nitrococcus mobilis Nb-231]
 gi|88791293|gb|EAR22405.1| hypothetical protein NB231_11734 [Nitrococcus mobilis Nb-231]
          Length = 378

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/329 (15%), Positives = 121/329 (36%), Gaps = 16/329 (4%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           +Y L+    P L+  ++ + + P+       +           T +V+ +F    L    
Sbjct: 35  IYLLRPILMPFLTGALLAYLADPLADRLERLRLNR--------TFAVIVVFTGLSLVGVG 86

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLKILSETFL 141
             +L +  L S++         V  W+    +P     + +  + L        ++E + 
Sbjct: 87  ALLLLLPMLGSQLDSLRSLLPQVVDWVHQVGLPWLRTHAGVGIESLDLATLRGAIAEHWQ 146

Query: 142 KTNG-IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
            T+     +   A+  G+       ++  + +  F+  RD   +  ++  L         
Sbjct: 147 STSSFAASVVAQATSSGLALAGLLANLALIPVVTFYLLRDWDVLIARIRDLLPRRMEPII 206

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             ++    +V+ +   G  ++ +  G++     WL G+   + +G++  I +++P    I
Sbjct: 207 STLAGECNEVVAAFLRGQLLVMLALGVIYAFGLWLLGLDLALLVGMLAGIASIVPYLGFI 266

Query: 261 SFT--AVSIYLLIKGNIFNATCLFLWGAIELF--IVDKTLRPFLVGGPIKLPFLPTFFGL 316
                A    +    +      L + G   +   +    L P LVG  I L  +   F +
Sbjct: 267 VGIGSAALATVFQFSDWLMPLGL-VCGVFLVGQLLESLLLTPLLVGDRIGLHPVAVIFAV 325

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           + G +  G  G+ +   + A+I V+ + +
Sbjct: 326 LAGGQLFGFSGILLALPIAAIIMVLLRHA 354


>gi|300717916|ref|YP_003742719.1| putative permease [Erwinia billingiae Eb661]
 gi|299063752|emb|CAX60872.1| putative permease [Erwinia billingiae Eb661]
          Length = 357

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 70/212 (33%), Gaps = 3/212 (1%)

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            D + +++    +  +   + ++ + + +FF  +D   +   +  +         +  + 
Sbjct: 145 GDQLVKYSLASLVGIMTLAIYLVLVPLMVFFLLKDKDQMLAAISRVLPRNRGLAGQVWAE 204

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTA 264
           +  +V  +   G  +  +  G+     +   G+   + L V+     +IP  GA      
Sbjct: 205 MNQQV-SNYIRGKVLEMVVVGIATWIGFLAIGMNYALLLAVLVGFSVLIPYVGALAVTIP 263

Query: 265 VSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
           V    L +  +      + +   I   +    L P L    + L  L     +V      
Sbjct: 264 VIGVGLAQWGLGGDFWTMIIVYLIIQGLDGNILVPVLFSEAVNLHPLVIILSVVIFGGLW 323

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G  G+F    L  LI  +       +    +K
Sbjct: 324 GFWGVFFAIPLATLIKAVVHAWPDELNVEPKK 355


>gi|167624521|ref|YP_001674815.1| hypothetical protein Shal_2600 [Shewanella halifaxensis HAW-EB4]
 gi|167354543|gb|ABZ77156.1| protein of unknown function UPF0118 [Shewanella halifaxensis
           HAW-EB4]
          Length = 383

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/335 (15%), Positives = 114/335 (34%), Gaps = 23/335 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G      + +IL  +        P + ++ I     P+ S     +         +A +
Sbjct: 12  KGFAISAFIIVILAGIKAASPIVVPFVLSVFIAVICNPMISWMTRHRAPR-----GLAVL 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M   ++  L+L       + E   ++       I    W+ +                
Sbjct: 67  LLMVFIVMMGLWLASVVGTSINEFSKQLPFYRDQLIEQFSWVVE--------------KL 112

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +++I  E  L            +           ++  +I+ + F   +    S ++
Sbjct: 113 AAFNIQISKEQILAYFDPGVALSMTTNMLSGVGSVMANLFLIILTVVFMLFESNGFSTKM 172

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L         K++ R +  V +   +   ++++G GL++G   +  GV   +  GVI 
Sbjct: 173 -HLALDDPDMRLKQVDRFLNSVNQYMVIKT-LVSLGTGLIIGVGLYFIGVDYALLWGVIA 230

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP  G+ I+     +   I+     A  + L       I+   + P  +G  + L
Sbjct: 231 FLFNYIPNIGSIIAAIPSVLLAFIQLGPGAAGGVALLYLGTNTIMGNAIEPRYMGKGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
             L  F  L+     +G +G+ +  P+ M +   +
Sbjct: 291 STLVVFLSLIFWGWLLGSVGMLLSVPLTMIVKIAL 325


>gi|239826942|ref|YP_002949566.1| hypothetical protein GWCH70_1491 [Geobacillus sp. WCH70]
 gi|239807235|gb|ACS24300.1| protein of unknown function UPF0118 [Geobacillus sp. WCH70]
          Length = 340

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/346 (14%), Positives = 115/346 (33%), Gaps = 25/346 (7%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           R +I  I++  LY ++     +L   I  F    +      +   +   + ++    V+ 
Sbjct: 16  RIVIFSILIFILYLVRSILNIILLTFIFSFLMNGLVDFISKRIRINRKIIVLLLYAVVVS 75

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           + +  ++      + E+ +L+ ++                         L  K       
Sbjct: 76  ILVYGVVKYLPVVINEISQLIKQLTEF---------------------YLKPKDNIVFNY 114

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           +    + +  T  ++F   +  ++        L I+  +I   FF  +   I    +   
Sbjct: 115 IIEQLKQYEITTYLNFGMTYLIKYFSDISSIGLQILLALILSLFFLLEKERIISFTNRFK 174

Query: 193 EHLFPAYWKKIS---RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                +++ ++    +   +          +IA    ++  +  W+ G P    LG++  
Sbjct: 175 YSKISSFYDELEYFGKKFARTFGKVIEAQFVIATINMIITVACLWMMGFPQLFGLGILIF 234

Query: 250 IMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            + +IP  G  IS   +       G +     + +  A+   +    L P L+     LP
Sbjct: 235 FLGLIPVAGVIISLFPLCFIAYSIGGVMKVVYVLIMIAVVHALEAYVLNPKLMSSKTNLP 294

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
              TF  L+      G+ GL +G  +   I  +     +  K + E
Sbjct: 295 VFYTFIVLIFSEHFFGVWGLILGIPVFVFILDVLGVKTVQGKRDDE 340


>gi|91200718|emb|CAJ73770.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 363

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 53/347 (15%), Positives = 112/347 (32%), Gaps = 11/347 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIY-----SSFISKKEESSTFLAVIATVSV 70
           I   +LV  Y LKG    +  A  I +   P+        F+  K+     LA++  ++ 
Sbjct: 12  IAAFLLVCYY-LKGILISLFLAFTIAYIVDPLLDIIEKRRFLFLKKGLPRGLAIVVLLTG 70

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           M               L   E V  V+            L           ++ K     
Sbjct: 71  MLFMAGGAAAYTIPKTLHGIERVGMVLKKQYPKYQENVELFIENHKDTGIAIFLKTQLGI 130

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC---LSIIFMIIALFFFYRDGFSISQQ 187
           Q+         +   + F                   ++I+   +   +  +D   I  +
Sbjct: 131 QNGSEKETQEKRPGLMKFALATVKNIFQGAFGLVGIIINIVVFGVVTIYLLKDFDVIIIK 190

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
             +L          +I   + + +++   G   + I   ++ G    + GVP    + ++
Sbjct: 191 CRNLLPVSKKEKIFEIFGKINENLKAFLRGQITVCIILSIIYGIGLTVIGVPLSYLIALL 250

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
                +IP  G  +      I   I+  +I +   +     +  F     + P +VG  +
Sbjct: 251 GGFGNVIPYIGIMLGLVPALILAFIQYQDITHLILVVAVFGVGQFFESTIITPKIVGTKL 310

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            L  +     ++   + +G LGL +   ++A+  V+  E ++  K  
Sbjct: 311 GLHPVAIILSILICSQILGFLGLLLAVPIVAVAKVLIDEGLLRYKNT 357


>gi|311029884|ref|ZP_07707974.1| hypothetical protein Bm3-1_04891 [Bacillus sp. m3-13]
          Length = 352

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 57/308 (18%), Positives = 105/308 (34%), Gaps = 2/308 (0%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            P++ ALI      P+     ++ +        I  +  +    +   FL    + E   
Sbjct: 31  VPIIIALITALFLEPLVRLLQARAKLKRNLSVFIVFLLFLTSIGIIGYFLTTKVITEGIN 90

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           LV            V R                        +              F  +
Sbjct: 91  LVENAPSYINEVNRVWRDFQSDMNNASEDLPPEFVTEISLQVDKFLYDLRIYLTDLFNIQ 150

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                     +Y +S +  +IALF F  D   +   L S  +    A  K +S  +  VI
Sbjct: 151 NVKNIFTNIPNYLVSFLVYLIALFLFLIDMPRLKAGLYSHLKEETAAKVKFMSSRLSYVI 210

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLL 270
              F    ++++                  + +  I  ++  IP  G+ +     +I+  
Sbjct: 211 FGFFKAQFLVSVIIFFTSLIGLLFIAPEVALLMSFIIWLIDFIPIIGSIVILGPWAIFHF 270

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           I G+I   T L +  AI L ++ +T+ P ++G  I L  L T   +  G++ +G+LG  +
Sbjct: 271 ITGDIGLGTQLSIL-AIVLLVIRRTVEPKVMGSHIGLSPLATLIAMYLGLKLLGILGFIV 329

Query: 331 GPVLMALI 338
           GP+L+   
Sbjct: 330 GPLLLIAF 337


>gi|282896491|ref|ZP_06304511.1| Protein of unknown function UPF0118 [Raphidiopsis brookii D9]
 gi|281198597|gb|EFA73478.1| Protein of unknown function UPF0118 [Raphidiopsis brookii D9]
          Length = 359

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/341 (13%), Positives = 122/341 (35%), Gaps = 15/341 (4%)

Query: 10  GIMRWMIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
            + +W+ +  ++VSLY L   +     + +A+++  T   + +               ++
Sbjct: 2   KLGQWIGLIALVVSLYILWQLREVLLLIFAAVVLATTLNRL-ARTCQNLGIKRGLAVFLS 60

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +  +   +     +    + + +EL  +V    +    V  W+ +        +     
Sbjct: 61  VMFFLVGIVAFFWVIVPPFVHQFQELTLRVPQGFER---VNTWIDE--QRSHIPQELEPV 115

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +     L   ++  +     + +   +  F    L   L+I+ +++    F  +  +  +
Sbjct: 116 IPDLNRLIAEAQPLI-----NRVLGNSFAFVSGSLVLVLNILLVLVLTAMFLTNPPAYQK 170

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
               L    +    + I       +     G  I     GL+      + GV + +ALGV
Sbjct: 171 LFVRLFPSFYRRRVEGILNQCEDSLERWLTGAFIAVCVVGLMSLIGLSILGVKAALALGV 230

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +  +M +IP   P      ++ + +  + +    + +       +    + P ++   + 
Sbjct: 231 LAGLMNLIPNLGPTMSVVPAMAIALLDSPWKPIFVLILYFFIQQLESNFITPMVMAHQVS 290

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           L    T    +  V   G LGLF+  + + ++A IW + ++
Sbjct: 291 LLPAVTLISQLFFVTFFGFLGLFLA-LPLTVVAKIWIQEVL 330


>gi|326317957|ref|YP_004235629.1| hypothetical protein Acav_3160 [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323374793|gb|ADX47062.1| protein of unknown function UPF0118 [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 434

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 68/188 (36%), Gaps = 4/188 (2%)

Query: 158 MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW--KKISRIVPKVIRSTF 215
           M  +     +  ++   FF    G    ++L  +            ++   +   I+   
Sbjct: 231 MGLVSAAGQLTVVVFLTFFSLASGNLFRRKLVRIAGQSLERRKITMEVLDDITGQIQRYL 290

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI--KG 273
           L     ++  G+  G AY L G+ +    GV+  ++ + P    I  T  S  +     G
Sbjct: 291 LVQVATSVLVGIGTGVAYALLGLENAAVWGVVAGVLNLAPYVGSIVVTGASALVAFLQFG 350

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
            +  A  +     +   IV   L P+L     ++  +  F  ++      GL G+ +G  
Sbjct: 351 TVDMALAVGGASLLIHTIVGNLLTPWLTSRTSRMSPVAVFVSVLAWGWLWGLWGVLLGIP 410

Query: 334 LMALIAVI 341
           +M ++  +
Sbjct: 411 VMMVVKAV 418


>gi|170743266|ref|YP_001771921.1| hypothetical protein M446_5162 [Methylobacterium sp. 4-46]
 gi|168197540|gb|ACA19487.1| protein of unknown function UPF0118 [Methylobacterium sp. 4-46]
          Length = 382

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/317 (13%), Positives = 105/317 (33%), Gaps = 8/317 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           ML  +  +   ++ +++  LY L+    P ++   + +   P+                +
Sbjct: 1   MLQRRATIGLAVLAVVVFLLYELRDVLVPFVAGAALAYVLDPVADRLERLGIGR-----L 55

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            AT  ++ +F++ LL      +      +  +  A    +   + +     G        
Sbjct: 56  SATFLILAVFVLGLLLALIIAVPLAARQIGALAAALPGVVSRIQAIIAENAGPLLERAGG 115

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                     +        + +  +           +     ++   +  F+   D   +
Sbjct: 116 AGTLQDLQASVGRLVGQAGSFLVNLAGSLWSGSQAVVGILSLLVVTPVVAFYLLIDWDRM 175

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           +  LD           + I+R + + I S   G +++ +  G       +L G+   V +
Sbjct: 176 TATLDGWVPPRHRDTVRLIARDIDRAITSFIRGQSLVCLLLGTFYALGLFLIGLNFGVLI 235

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLV 301
           G++   +  IP  G+   F   +   +++        L   G   +  F+    L+P LV
Sbjct: 236 GLLAGFLTFIPYVGSLTGFLLSTGVAVVQFWPDWPWILATLGVFLVGQFMEGNVLQPKLV 295

Query: 302 GGPIKLPFLPTFFGLVG 318
           G  ++L  +   F L+ 
Sbjct: 296 GDAVRLHPVWLMFALLA 312


>gi|238922451|ref|YP_002935964.1| hypothetical protein EUBREC_0025 [Eubacterium rectale ATCC 33656]
 gi|238874123|gb|ACR73830.1| protein of unknown function UPF0118 [Eubacterium rectale ATCC
           33656]
          Length = 437

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/332 (12%), Positives = 109/332 (32%), Gaps = 27/332 (8%)

Query: 14  WMIMFIILVSLYFLKGF----------FAPVLSALIIGFTSWPIYSSFISKK-------- 55
           + +  +   +LY  +GF            P++  L++ +   P+                
Sbjct: 46  FAVSILFFFALYRFEGFAGIWSKLLAAAMPIIMGLVLAYLMNPVMLWLERCFKKLLSKKM 105

Query: 56  ----EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS 111
               +      A+  T SV+ L  +  L +       +  +   +             + 
Sbjct: 106 KSESKLRKVSRALAITGSVIILVAIISLLIAAIVPSVIASISGLMKTLPNDVAAFINMIK 165

Query: 112 DIPGGM-WASELWTKHLSHP-QSLKILSETFLKTNGIDFIPRFAS---RFGMIFLDYCLS 166
           +   G    +EL +  L +    ++  +   L      ++ +  +          ++ + 
Sbjct: 166 NGNFGDSKIAELASTGLQNATDYIENYATEKLIPEAQKYVAQITTGVISIVRGLFNFIIG 225

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
           II M+  +           + + ++ +        +  R   ++      G  I ++  G
Sbjct: 226 IIVMVYVMSIQETLAGQSKKIIYAVCKPKTGNIIIETIRKTNEIFGGFISGKIIDSLIIG 285

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           ++      +  +PS V + VI  +  +IP   P      S+ +++  + ++A  L ++  
Sbjct: 286 VIAYFGCLILRIPSSVLVAVIIGVTNVIPVFGPFIGAIPSLLIVVIQSPWHALYLLIFIV 345

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           +   +    + P ++G    L      F ++ 
Sbjct: 346 VLQQVDGNIIGPKILGSSTGLSTFWVMFAILI 377


>gi|86607588|ref|YP_476350.1| hypothetical protein CYB_0086 [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556130|gb|ABD01087.1| putative membrane protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 376

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/320 (15%), Positives = 112/320 (35%), Gaps = 8/320 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + ++     V +A+++      +      +         VI +++V+   I+  L +   
Sbjct: 20  WQIRQILLLVFAAIVLAVALDTLAQ-IPQRYGFRRGPSIVITSLTVLVAAILVGLIVVPP 78

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
              +++ L +  V A    +   R    +   +              SL   +   ++  
Sbjct: 79  LAEQLRWLFTDGVPAG--IVQAQRLFESLILSLPTDIELPTLRELANSLVPQATELVRQV 136

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
              F   F + FG       L+++F+II       D  + S+   S+    +    + I 
Sbjct: 137 RDFFSESFTAFFGT-----LLNLLFVIILTILLLADPQAYSRAFVSVFPAFYRPRIRYIL 191

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
           +     +R   +G+   +    L+ G   W+ GVP  +A  V+  +   IP   P     
Sbjct: 192 KRCELALRGWLMGILFTSTLVMLLSGIGLWILGVPLILANAVLAGLFNFIPNIGPTLSVV 251

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             + + +    + +  +     +   +      P ++   + L    T    V      G
Sbjct: 252 APMLVALTDAPWKSLAVLGLYILIQQLESSVFTPIVMSRQVSLLPALTLVAQVTSAFFFG 311

Query: 325 LLGLFIGPVLMALIAVIWKE 344
           +LGLF+   L A++ V  +E
Sbjct: 312 VLGLFLAVPLAAILQVWIQE 331


>gi|104773948|ref|YP_618928.1| hypothetical protein Ldb0899 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103423029|emb|CAI97720.1| Conserved hypothetical membrane protein [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
          Length = 357

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 53/354 (14%), Positives = 115/354 (32%), Gaps = 27/354 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE-SSTFLAV 64
            N   + R  ++ +I+++LY+++     +L   I  +    +      K +  S   +  
Sbjct: 10  KNNIHLRRATVLVMIILALYYVRAMMNTILLTFIFTYLILHLVRFVQGKFKHVSDKLIVA 69

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  + ++ L    L +     + ++ ++   V+   Q                     W 
Sbjct: 70  LTYLLIVVLLYFALRYYVPVLVKQVTKMTKSVINYYQTN----------------DVGWL 113

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
               H    +    + +K++               F    +S +  ++  FF+  +   +
Sbjct: 114 MTQLHKHVSEKTISSQVKSSLTALTAAL-----KGFGSVTMSFVMALVLSFFYTIELKEM 168

Query: 185 SQQLDSLGEH----LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                S  +      F        R              +IAI    +      +  +P 
Sbjct: 169 QTFSQSFLKSDLFGWFFEDIAYFGRKFTNTFGVVLEAQFLIAICNTTLTIVCLAIMKMPQ 228

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             ALG++  I +++P  G  IS   +S+     G I +   + +  A+   +    L P 
Sbjct: 229 IFALGLMVFICSLVPVAGVIISLIPLSLVAYTVGGIQDVIYILIMIAVLHTLETYILNPK 288

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            +    +LP   TF  L+ G    G  GL +   +      I     +  K+ K
Sbjct: 289 FMSSKTELPIFYTFVALLFGEHFFGTWGLIVSVPIFTFFLDILGVKNINSKQEK 342


>gi|29375932|ref|NP_815086.1| hypothetical protein EF1365 [Enterococcus faecalis V583]
 gi|227518629|ref|ZP_03948678.1| permease [Enterococcus faecalis TX0104]
 gi|227553160|ref|ZP_03983209.1| permease [Enterococcus faecalis HH22]
 gi|255972922|ref|ZP_05423508.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|255975976|ref|ZP_05426562.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256762372|ref|ZP_05502952.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256853002|ref|ZP_05558372.1| permease [Enterococcus faecalis T8]
 gi|256958855|ref|ZP_05563026.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256962051|ref|ZP_05566222.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256965249|ref|ZP_05569420.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|257078887|ref|ZP_05573248.1| permease [Enterococcus faecalis JH1]
 gi|257082666|ref|ZP_05577027.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|257085375|ref|ZP_05579736.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|257086870|ref|ZP_05581231.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257089759|ref|ZP_05584120.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257415975|ref|ZP_05592969.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|257419177|ref|ZP_05596171.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257422745|ref|ZP_05599735.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|294779557|ref|ZP_06744951.1| putative membrane protein [Enterococcus faecalis PC1.1]
 gi|300860372|ref|ZP_07106459.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
 gi|29343394|gb|AAO81156.1| conserved hypothetical protein [Enterococcus faecalis V583]
 gi|227073924|gb|EEI11887.1| permease [Enterococcus faecalis TX0104]
 gi|227177686|gb|EEI58658.1| permease [Enterococcus faecalis HH22]
 gi|255963940|gb|EET96416.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|255968848|gb|EET99470.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256683623|gb|EEU23318.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256711461|gb|EEU26499.1| permease [Enterococcus faecalis T8]
 gi|256949351|gb|EEU65983.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256952547|gb|EEU69179.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256955745|gb|EEU72377.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256986917|gb|EEU74219.1| permease [Enterococcus faecalis JH1]
 gi|256990696|gb|EEU77998.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|256993405|gb|EEU80707.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|256994900|gb|EEU82202.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|256998571|gb|EEU85091.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257157803|gb|EEU87763.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
 gi|257161005|gb|EEU90965.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257164569|gb|EEU94529.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|294453347|gb|EFG21755.1| putative membrane protein [Enterococcus faecalis PC1.1]
 gi|295112886|emb|CBL31523.1| Predicted permease [Enterococcus sp. 7L76]
 gi|300849411|gb|EFK77161.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
 gi|323480600|gb|ADX80039.1| conserved hypothetical protein [Enterococcus faecalis 62]
 gi|327535006|gb|AEA93840.1| membrane protein [Enterococcus faecalis OG1RF]
          Length = 350

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/358 (13%), Positives = 119/358 (33%), Gaps = 23/358 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  + + R+ ++ +I+  LY  +     +L   I  + +  +        +  +  + ++
Sbjct: 8   IQNERLRRFCVLALIIFVLYLSRSMITTILLTFIFTYLAVRLVHFVQRYMKIPTIVIVLL 67

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
               V+ L  + +       + +  ++++ VV   Q        +               
Sbjct: 68  TYALVVFLIYLAITKYVPVLVNQTTQMINSVVDFYQSPHTDTNQVLQFIDQYLEKSNLLS 127

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L +  S+               I R+    G + L + +S I      FFF  +   ++
Sbjct: 128 QLQNGASM---------------ILRYIQDIGAVGLSFVMSFILS----FFFMIEKKQMA 168

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                  +  F  +++ I     K + +          IA+   ++   A  + G     
Sbjct: 169 DFSKLFLKSDFDWFFQDIYYFANKFVNTFGVVMEAQFFIAVVNTVITTLALAIIGFTQLP 228

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +L ++  I++++P    I     +S     +G + +   +     I        L P  +
Sbjct: 229 SLAIMIFILSLVPVAGVIISCIPLSFIAYSQGGLNDVIYILALITIVHLFESYVLNPKFM 288

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
               +LP   TF  L+   R  G+ GL +G  +      + K   +   +    +  N
Sbjct: 289 SSKTELPIFYTFVILLVSERLFGVWGLIVGIPVFTFFLDVLKVKPIRGLKRLPNVKKN 346


>gi|16803459|ref|NP_464944.1| hypothetical protein lmo1419 [Listeria monocytogenes EGD-e]
 gi|47095370|ref|ZP_00232980.1| membrane protein, putative [Listeria monocytogenes str. 1/2a F6854]
 gi|224499726|ref|ZP_03668075.1| hypothetical protein LmonF1_08559 [Listeria monocytogenes Finland
           1988]
 gi|224501639|ref|ZP_03669946.1| hypothetical protein LmonFR_03832 [Listeria monocytogenes FSL
           R2-561]
 gi|254827707|ref|ZP_05232394.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|254898415|ref|ZP_05258339.1| hypothetical protein LmonJ_01330 [Listeria monocytogenes J0161]
 gi|254912094|ref|ZP_05262106.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254936421|ref|ZP_05268118.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|284801805|ref|YP_003413670.1| hypothetical protein LM5578_1560 [Listeria monocytogenes 08-5578]
 gi|284994947|ref|YP_003416715.1| hypothetical protein LM5923_1512 [Listeria monocytogenes 08-5923]
 gi|16410848|emb|CAC99497.1| lmo1419 [Listeria monocytogenes EGD-e]
 gi|47016191|gb|EAL07114.1| membrane protein, putative [Listeria monocytogenes str. 1/2a F6854]
 gi|258600086|gb|EEW13411.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|258609013|gb|EEW21621.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|284057367|gb|ADB68308.1| hypothetical protein LM5578_1560 [Listeria monocytogenes 08-5578]
 gi|284060414|gb|ADB71353.1| hypothetical protein LM5923_1512 [Listeria monocytogenes 08-5923]
 gi|293590062|gb|EFF98396.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 345

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 115/358 (32%), Gaps = 26/358 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  + + R  +  +I   LY L+     +L   I  +    + +  + +       + ++
Sbjct: 8   LQNRSVRRVGVFILIAFVLYLLRSQMNIILLTFIFSYLITRLENFILRRISIYRQIIVLL 67

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V +  + I   +        ++ +LV                                
Sbjct: 68  LYVLIAAVIIFVFVKYIPVLADQINQLVKFGNTFLTT---------------------DS 106

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +      +  L+  F      +        +        +++   ++   FF      + 
Sbjct: 107 NNDFINYIVSLANQFDIMKYTEQGVSMILTYLTNVGTVLMNVFIALMLSLFFSLGKEHLV 166

Query: 186 QQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              +          +++                    IIA+   ++   A W+ G P  +
Sbjct: 167 SFTNQFSTSKIGFIYEEVKFFGSKFVATFGKVIEAQFIIALVNAILTTIALWILGFPQLM 226

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L ++  ++ +IP  G  IS   ++I     G +     + +   I   +    L P L+
Sbjct: 227 TLSIMVFLLGLIPVAGVIISLVPLTIIGYSIGGVEYIFYILVVVIIIHALESYVLNPKLM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKEKISS 358
                LP   TF  L+ G    G+ GL +G PV+M  + V+   +   I++ K+ IS 
Sbjct: 287 SAKTNLPVFYTFIILIFGEHFFGIWGLIVGIPVVMFFLDVLGVTNQEEIEQPKDTISH 344


>gi|282600569|ref|ZP_05979073.2| putative membrane protein [Subdoligranulum variabile DSM 15176]
 gi|282572006|gb|EFB77541.1| putative membrane protein [Subdoligranulum variabile DSM 15176]
          Length = 424

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/330 (13%), Positives = 116/330 (35%), Gaps = 13/330 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEE---SSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
            +P    ++I F   P+   F     +      ++A++ +  V  L +  L +L    ++
Sbjct: 69  LSPFAGGVVIAFVLNPMAMWFHRVLLKQDPRLRWVAILLSYIVAALLLALLAWLVVPQII 128

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
               ++   +     G+           G+    +          ++      L    + 
Sbjct: 129 SSIAILFNSLPGYFEGLQNTLLYLQDHYGLQMQNVLRILDDSEAMMRE-----LYNVAVA 183

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK----KI 203
            +P+  +  G +  ++ +++   + +  +       +  Q+ +L     P        +I
Sbjct: 184 AMPQIVTTIGSVASNF-VAVFTAVASSVYMLSGKDKLIHQIKTLVHAFLPESVASNTLRI 242

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
                +     F+G  I +   G++      +  +   + + V   I  +IP   P    
Sbjct: 243 CHYANENFTGFFVGKIIDSAIIGVLTFVLMSILRLDFALLVSVFVGITNIIPVFGPFIGA 302

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             SI++L+  +   A    +       +    + P ++G  I +  L   F +V G    
Sbjct: 303 IPSIFILLLVDPVQALIFAVLILFIQQLDGNFIGPKILGQSIGISSLWVLFSIVVGGDLF 362

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           GL+G+ +G  L A +  +  E ++ + + +
Sbjct: 363 GLVGMVVGVPLFATLYGLLHEVVVYLLDRR 392


>gi|56808363|ref|ZP_00366119.1| COG0628: Predicted permease [Streptococcus pyogenes M49 591]
          Length = 382

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 110/291 (37%), Gaps = 8/291 (2%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           I  +     F + + ++    + ++   +S +   +   I     ++++      +    
Sbjct: 87  ICLLLAYLTFFILITWIISIVIPDLITSISTLTKFDTITIQ--EVVNNLEHNKLLARTIQ 144

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL--DYCLSIIFMIIALFFFYRDGF 182
            ++     L      + +     F+    +    + +     +++    +   +      
Sbjct: 145 -YIGGDGKLTETIANYSQQLLKQFLTVLTNILTSVTVIASAIINLFISFVFSLYVLASKE 203

Query: 183 SISQQLDSLGEHLFPAYWKKI---SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            + +Q ++L +     Y K+I     ++ +     F+  T+ A+  G +  S  ++  +P
Sbjct: 204 DLCRQGNTLVDTYTGKYAKRIHYLLELLHQRFHGFFVSQTLEAMILGSLTASGMFILRLP 263

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               +GV+ A  A+IP        A+   L++  ++  A    ++  I   I    + P 
Sbjct: 264 FAGTIGVLVAFTALIPVIGASIGAAIGFILIMTQSMSQAIIFIIFLIILQQIEGNFIYPK 323

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +VGG I LP +     +  G    G++G+ I   L A +  + K++I   +
Sbjct: 324 VVGGSIGLPAMWVLMAITIGASLKGIVGMIIAVPLAATLYQVIKDNIQKRQ 374


>gi|299538219|ref|ZP_07051504.1| hypothetical protein BFZC1_19470 [Lysinibacillus fusiformis ZC1]
 gi|298726421|gb|EFI67011.1| hypothetical protein BFZC1_19470 [Lysinibacillus fusiformis ZC1]
          Length = 363

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 96/293 (32%), Gaps = 7/293 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            LK  F P+L   ++ + + PI   F+ K+        +     ++ +  +    +    
Sbjct: 36  ILKAIFVPLLLGGVLYYVTEPI-QRFLEKRRFPRWGSILTIVFGLIAMIGIFGWIIGNPI 94

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +LV    + +       + L++            +     + +    +       
Sbjct: 95  AEQVNKLVKNAPMISTSISTSIQQLTEY-VTQNKDNFPQELNDVIKKMANSVQDIAVVTS 153

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
             F+    S   +  L   +   F+     F  +D    +  +          + KK   
Sbjct: 154 KGFVSFLQSIVSVSLLAILIPFFFI-----FMLKDHEKFAPSIYKYFSGERQQWVKKTLS 208

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +  V+R+   G   I+    L++   Y + G+   + L +    M MIP   P    A 
Sbjct: 209 EIDDVLRTYIQGQLQISFLLALIMYVGYLIIGLDYSLLLVIFAFFMNMIPFIGPWIAFAP 268

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           ++ + +  +      + +   +   I    + P ++G  + +  L     ++ 
Sbjct: 269 ALIVAVIQDPILVVWVSVVTLVAQQIDSNFITPNVMGKSLDIHPLTVITIILA 321


>gi|148653241|ref|YP_001280334.1| hypothetical protein PsycPRwf_1439 [Psychrobacter sp. PRwf-1]
 gi|148572325|gb|ABQ94384.1| protein of unknown function UPF0118 [Psychrobacter sp. PRwf-1]
          Length = 366

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 53/328 (16%), Positives = 117/328 (35%), Gaps = 9/328 (2%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
               P L A I+ +   P+ +              +    +++  F   L +L      +
Sbjct: 31  PVIVPFLCAFILAYLFNPVVTRMARFMP--RWLAIIFVYTAIIVGFGALLWWLLPTLWEQ 88

Query: 89  MKELVSKVVLANQHGIPVPR-WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           ++     +    +      R W+++     +       H+    +L  L++ +   +   
Sbjct: 89  LQSAWEYLPRVVEWYNSDIRVWVNN--NSQFHLPPLESHIVSETALDYLNKNYNVADAQS 146

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
           F  +  +  G+  ++    ++ + I  F+F  +     Q               +I    
Sbjct: 147 FFMQVLNS-GLAVINSTGLVVLVPILTFYFLFNWNQRLQTWKKALPKASAPKIIEIVHDC 205

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVS 266
              + +   G  ++ I  G+V      L G+   + +G++  I + +P  G  + F A  
Sbjct: 206 DDALMAFIKGQLLVMILLGVVYAVQLQLIGLDLGLIIGMVAGIASFVPYLGFGLGFIAAI 265

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIV--DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           I  L +  +       + GA  +        L+P L+G  I L  L   F ++ G   MG
Sbjct: 266 IAGLFQFGMDWVHLGLIAGAFMVGQAVEGYVLQPLLLGDKIGLSPLWVIFAVLAGASLMG 325

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKEN 352
            +G+ I   + A++ V++     A K+ 
Sbjct: 326 FVGMLIALPVSAILNVLFHHGYEAYKQT 353


>gi|13471741|ref|NP_103308.1| hypothetical protein mll1810 [Mesorhizobium loti MAFF303099]
 gi|14022485|dbj|BAB49094.1| mll1810 [Mesorhizobium loti MAFF303099]
          Length = 662

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/338 (15%), Positives = 108/338 (31%), Gaps = 22/338 (6%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           LYF +  F P+  AL++ F   P+ S+   K+       AVI +V         L    +
Sbjct: 44  LYFGREVFLPIAIALLLTFALAPLVSAL--KRVGIPRIAAVIVSVLSAFAA---LALFSF 98

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
               ++ EL   + +   + +   R L +   G       +  +          +  L  
Sbjct: 99  VVATQVSELAQNIPVYQTNILAKIRSLKETGVGGGIIAKLSNVVERVGQEIDRQDATLPA 158

Query: 144 NGIDFIPR---------------FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              D  PR                        +    S   +I+ + F   +   +  + 
Sbjct: 159 ATPDKQPREPVPVEIVARERPLEVLQNIVGPLISPLGSAGLIIVVVIFMLLEREDLRDRF 218

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L  +       +  +   K +    L   ++ I   + +    W+ G+P+ +  G++ 
Sbjct: 219 IRLVGYGDLHRTTEALQDAAKRVGRYLLMQLVVNIVYAIPIAIGLWILGIPNALLWGLLA 278

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF--IVDKTLRPFLVGGPIK 306
             +  +P   P     + ++L +      +  L+      +   +    + P+L G    
Sbjct: 279 LALRFVPYIGPAIGMLLPLFLALAVAPGWSLVLWTAALFVVMELVTGNVVEPWLYGSRTG 338

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L  L      +      G LGL +   L   + V+ + 
Sbjct: 339 LSPLAIIVAAIFWTWLWGPLGLVLSTPLTVCLVVLGRH 376


>gi|312139534|ref|YP_004006870.1| integral membrane protein [Rhodococcus equi 103S]
 gi|311888873|emb|CBH48186.1| putative integral membrane protein [Rhodococcus equi 103S]
          Length = 387

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/360 (12%), Positives = 113/360 (31%), Gaps = 21/360 (5%)

Query: 2   RETMLNPQGIMRWMIMFIIL---VSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKK 55
           R   L    +    I+  +    VS +    ++ F   +  A +   T  P+      + 
Sbjct: 21  RRADLRSLRVAIVYILLAVAAYQVSGWLFHHIRDFLGMLFLAWLASVTIEPVVDRLE-RT 79

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
                    +     +   I  +         ++ +L+            +P  L+ +  
Sbjct: 80  GMRRGLGTGLVLFGTIVFAIGFIAIFGALLAEQLAQLLG----------ALPDALTRV-- 127

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
             WA+  +    +  + L  ++   ++     + P          +        +++ +F
Sbjct: 128 TDWANRKFGTDFATGKDLINITPETVRDLAEKYTPGVLGVV-STLVGVIFQAATVLLFVF 186

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           +    G  + + + S            +  I         +   I+A    +  G  + +
Sbjct: 187 YMSAQGPQLRRTISSWFPARQQKVIASVWEISVDKAGGYVVSRVILAAFSAVATGIFFLI 246

Query: 236 AGVPSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
            GVP  + L + T +++  IP         +   +       +A  + L+G     I + 
Sbjct: 247 IGVPYWLPLAIWTGVVSQFIPTLGTYLAIGLPAVIAAAAQPLDAVWVILFGTAYQQIENY 306

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            L P +    + +     F  ++ G    G +G  +   ++A+I  I +      +  +E
Sbjct: 307 ILHPRITSRTVSIHPAVAFGSVIVGASLFGAIGALVSVPVVAVIQAIVETYGHRYELVQE 366


>gi|118086653|ref|XP_419042.2| PREDICTED: similar to chromosome 9 open reading frame 5 [Gallus
           gallus]
          Length = 901

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 75/193 (38%), Gaps = 9/193 (4%)

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDG---FSISQQLDSLGEHLFPAYWKKIS-RIVPK 209
              G   L++ LS++  +  LF+        +   + + SL     P     I  + V +
Sbjct: 668 FHSGTALLNFVLSVVIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIVGQSVEE 727

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIY 268
            IR  F     +A   GL     + + G+        + AI+  +P  G   +     + 
Sbjct: 728 AIRGVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAIPAVLD 787

Query: 269 LLI-KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           L + +G    A  L ++  +  + VD  +   + GG        T   + GG   +GL G
Sbjct: 788 LWLVQGEGCKAILLLVFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEG 844

Query: 328 LFIGPVLMALIAV 340
             IGP+L+ ++ V
Sbjct: 845 AIIGPILLCILVV 857


>gi|89094851|ref|ZP_01167784.1| membrane protein, PerM family protein [Oceanospirillum sp. MED92]
 gi|89080906|gb|EAR60145.1| membrane protein, PerM family protein [Oceanospirillum sp. MED92]
          Length = 363

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/348 (14%), Positives = 117/348 (33%), Gaps = 12/348 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + + ++ ++++   L+ +  L    APV + +I+ F      +              ++ 
Sbjct: 15  DEEALLLFVLLGASLIVILTLGQALAPVFAGIILAFLMQGGVNRLRQLNVPH-LLSVILV 73

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            ++ +      LL +      +   L +++         V   L +   G  + E   + 
Sbjct: 74  FLAFVGGLGALLLIVMPLAWKQSVNLFNELPGIMSEIQSVLLLLPERYPGFISEERVLEL 133

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           ++   +          +    ++  F+       +   + ++ + I +FFF +DG S+++
Sbjct: 134 INLAAAEL--------SQMGQWVVTFSLNSITSIIALLIYLVLVPILVFFFLKDGSSLTR 185

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
              S           ++   +   I +   G  I  I  G V    +   G+     LG+
Sbjct: 186 WWVSFLPE-KRDMMTQVWHEMDDQIANYIRGKVIEIIVVGSVTYITFIFLGINYAALLGI 244

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIF-NATCLFLWGAIELFIVDKTLRPFLVGGP 304
           +  +  +IP  GA +    V++    +         L +   I   +    L P L    
Sbjct: 245 LVGLSVLIPYIGAALVTLPVALIGFFQWGWSSEFMYLMIAYGIIQALDGNVLVPLLFSEA 304

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           + L  +     ++      G  G+F    L  L   I      A ++ 
Sbjct: 305 VNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLFKAILSAWPKAKQQP 352


>gi|302391202|ref|YP_003827022.1| hypothetical protein Acear_0410 [Acetohalobium arabaticum DSM 5501]
 gi|302203279|gb|ADL11957.1| protein of unknown function UPF0118 [Acetohalobium arabaticum DSM
           5501]
          Length = 348

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 53/324 (16%), Positives = 123/324 (37%), Gaps = 9/324 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            LY ++    P + A+ I +   P +   +  +  S           ++ +FI+ +  LF
Sbjct: 23  FLYLVRIVLLPFVLAIFIVYLVNP-FVKLLINRGVSRNLA-------LVLIFIIVVGGLF 74

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
             G      L+ ++             +  I   +       K  S  Q +   +   ++
Sbjct: 75  LVGFFAAPPLIEELNALANRIPQYSIEIQKIIDSVTQKYQRFKLPSTFQLVVDNAIERIQ 134

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              + F+ R      +  L    S+I   I  F+  +D  +I +   +L         K+
Sbjct: 135 NIILQFVERTTEVI-IGILSRFFSLIMAPILAFYMLKDIETIKKNFWTLIPKESRKDIKQ 193

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           + + + KV+     G  ++++  GL+     +L  +  ++ +G+   IM +IP    +  
Sbjct: 194 LLKKIDKVLIDYLKGQLLVSVVVGLLSMLGLYLLDINFYLIIGIFAGIMNLIPYLGVVFG 253

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++++    +  +   + +  A    +    + P +VG  + L  +   F L+ G   
Sbjct: 254 ILPAVFVASFKSFQSILEVIVMFAFVQQLEGSLISPKIVGDKVGLHPILIIFSLLVGGEL 313

Query: 323 MGLLGLFIGPVLMALIAVIWKESI 346
           +G++G+ +   +  +I VI    I
Sbjct: 314 LGIIGMLLAVPVAGIIKVILNHYI 337


>gi|56750445|ref|YP_171146.1| hypothetical protein syc0436_d [Synechococcus elongatus PCC 6301]
 gi|81299922|ref|YP_400130.1| hypothetical protein Synpcc7942_1113 [Synechococcus elongatus PCC
           7942]
 gi|56685404|dbj|BAD78626.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81168803|gb|ABB57143.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 363

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 53/353 (15%), Positives = 128/353 (36%), Gaps = 11/353 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R   L    ++  + + +IL+ L+ L+G    ++SA+++  +  PI +     +      
Sbjct: 6   RRISLTTDSLLLIVGLSLILLMLWQLRGLILILMSAIVLAASIAPIVNQLEQWRLPR--- 62

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
                 + V+  +   L  L    +L    ++S++    +    +   +  +   +    
Sbjct: 63  -----WLGVLVAYGGLLAILTGASLLVGPLVISQIQTLLRQLPNLVERVELLSIDIAEQL 117

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                   PQ +          N    + R +       L    S++  ++   +   D 
Sbjct: 118 DLQDSPLLPQLVNPQEVAGWVINTSQQLLRQSYGITRGILGGFFSVVLGLLLSSYLVADS 177

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV-PS 240
            ++ +    L    +      +   V + + +   G  ++++  G+ +       G+   
Sbjct: 178 KTLGRGFVRLFAAPWDDRLAALLGPVGQRMGAYIRGRVLVSLLLGIAIALGLRTLGLGDY 237

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRP 298
            + LG I     +IP  G  +         L +G+        L   + +  ++   L P
Sbjct: 238 AIGLGAIAGFTNLIPFLGPFLGAIPALFVALAQGDSAWLFLWVLLLFVIIQNLESYVLDP 297

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            LVG  + +  L     ++GGV+ +G++G  I P  +A  A++ +   +  K+
Sbjct: 298 LLVGAAVGIHPLYQLLAVLGGVQLLGIVGAVIAPPWIAGGALLLERLYLQPKD 350


>gi|167762104|ref|ZP_02434231.1| hypothetical protein BACSTE_00455 [Bacteroides stercoris ATCC
           43183]
 gi|167700063|gb|EDS16642.1| hypothetical protein BACSTE_00455 [Bacteroides stercoris ATCC
           43183]
          Length = 374

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 56/343 (16%), Positives = 119/343 (34%), Gaps = 17/343 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L     P   A +I +  +P+ + F  K +  +  +++   +  + +      +L    M
Sbjct: 31  LSSVLLPFFIAWLIAYLVYPLVTFFQYKLKLRNRIVSIFCALLTLLIVGAGAFYLLVPPM 90

Query: 87  LE----MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
           ++    ++ L+ +      +   VP  LSD        +  T+  +    L  L E   +
Sbjct: 91  IQECGRVQTLLVQYFSHGTYNSNVPTSLSDFLRDNIDVKFITELFNKENLLDALKEAVPR 150

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 +    S    +        I ++  +F    D  SI++    L    + ++   
Sbjct: 151 ------LWSLLSDSVDLLFSVFTIFIILLYVIFILL-DYESIAEGWTHLVPMKYRSFVVG 203

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           I   V   +   F G   +A+  G++    + +   P  + LG+    + M+P    I  
Sbjct: 204 ILNDVKVGMNRYFRGQAFVALCVGILFSIGFLIIDFPLAIGLGLFIGALNMVPYLQIIGL 263

Query: 263 TAVSIYLLI----KGNIFNATCL--FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
               I  ++     G+ F            +   I D  + P ++G    L        L
Sbjct: 264 VPTIILAILKASDTGDNFWIIIASAMAVFIVVQTIQDGFIVPRVMGKITGLNPAIILLSL 323

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                 MG+LG+ I   L  L+   ++  I+  +   +  S++
Sbjct: 324 SIWGSLMGMLGMIIALPLTTLMLSYYQRFIINRENIHKTESAD 366


>gi|297623498|ref|YP_003704932.1| hypothetical protein Trad_1266 [Truepera radiovictrix DSM 17093]
 gi|297164678|gb|ADI14389.1| protein of unknown function UPF0118 [Truepera radiovictrix DSM
           17093]
          Length = 400

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/312 (13%), Positives = 103/312 (33%), Gaps = 11/312 (3%)

Query: 16  IMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEES-----STFLAVIAT 67
           ++ +   +++F    +G +     A  I + + P+   F  ++           L + A 
Sbjct: 20  LLLLASGAVWFFYETRGVWLLFFLAYTIAYLTNPLTLWFQRRRLPRWLGVGVVLLLLTAL 79

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
            ++    I   +      M E+  L   ++   +    V R L   P   +  +   +  
Sbjct: 80  FALASFVIAQFVHQASLFMQELPNLNEPLLRWYEGLPEVLRGLVPTPVVDFLGQPGAQAG 139

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY---CLSIIFMIIALFFFYRDGFSI 184
           +   +  I     +       + +F++    + +++    L  + ++    F   D   I
Sbjct: 140 AELGAELIAPFEGMVGYLGGVLTQFSANVFALLVNFVGGLLQAVVLLFLTLFLLYDFNGI 199

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           ++    L    +     +  + +   +     G  +IA+  G  +     L GVP    +
Sbjct: 200 NRTFLRLIPERYREGGLETLQRLDVSVGGYIRGQILIALVVGFSIWLGLTLLGVPLAFGV 259

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           G + A+  ++P   PI     +  L +               +  F+    + P +    
Sbjct: 260 GFVAAVFNVVPFLGPIVAFIPAGLLALTVGWPYVLATAALFMVINFLDGNVISPIIFSKT 319

Query: 305 IKLPFLPTFFGL 316
           +K+  L     +
Sbjct: 320 VKVHPLTVILSV 331


>gi|182437581|ref|YP_001825300.1| putative integral membrane protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178466097|dbj|BAG20617.1| putative integral membrane protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 368

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 103/299 (34%), Gaps = 21/299 (7%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           P++   I++   + +  A +   +++ +       +    +    ++V  +  A Q    
Sbjct: 58  PVHRWLIAR-GLNRSLAAGLTCAALVAVVGGAGYIVVTALIDSGDQIVDSLKDAGQ---- 112

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
              W+           L  +  ++   L   ++  ++  G        S    +      
Sbjct: 113 ---WV--------VDHLDIEGATNVDDLADNAKGLVEKFGASAAGGLLSGI-SLVGSLVA 160

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           + +  ++  FFF RD         ++         + + R   + +     G T IA+ +
Sbjct: 161 TSVLALLLTFFFLRDSDRAVNLAHAVAPRGTGDLVEAMGRRAFEAVEGFMRGTTFIALID 220

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
            + +     +  VP  V LG +  + A IP        AV++ L+   +      L+  G
Sbjct: 221 AVCITVGLLILDVPGAVGLGALVFVGAYIPYLGAFISGAVAV-LVALADRGFVIALWALG 279

Query: 286 AI--ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            +     +    L+P +    +++        L  G    GLLG+ +  P+  A   V+
Sbjct: 280 VVLAVQVLEGHVLQPMIQSRTVQMHPAMIMIALTAGASVAGLLGMLLAVPLCAAAFGVL 338


>gi|325672582|ref|ZP_08152278.1| hypothetical protein HMPREF0724_10059 [Rhodococcus equi ATCC 33707]
 gi|325556459|gb|EGD26125.1| hypothetical protein HMPREF0724_10059 [Rhodococcus equi ATCC 33707]
          Length = 387

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/360 (12%), Positives = 113/360 (31%), Gaps = 21/360 (5%)

Query: 2   RETMLNPQGIMRWMIMFIIL---VSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKK 55
           R   L    +    I+  +    VS +    ++ F   +  A +   T  P+      + 
Sbjct: 21  RRADLRSLRVAIVYILLAVAAYQVSGWLFHHIRDFLGMLFLAWLASVTIEPVVDRLE-RT 79

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
                    +     +   I  +         ++ +L+            +P  L+ +  
Sbjct: 80  GMRRGLGTGLVLFGTIVFAIGFIAIFGALLAEQLAQLLG----------ALPDALTRV-- 127

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
             WA+  +    +  + L  ++   ++     + P          +        +++ +F
Sbjct: 128 TDWANRKFGTDFATGKDLINITPETVRDLAEKYTPGVLGVV-STLVGVIFQAATVLLFVF 186

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           +    G  + + + S            +  I         +   I+A    +  G  + +
Sbjct: 187 YMSAQGPQLRRTISSWFPARQQKVIASVWEISVDKAGGYVVSRVILAAFSAVATGIFFLI 246

Query: 236 AGVPSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
            GVP  + L + T +++  IP         +   +       +A  + L+G     I + 
Sbjct: 247 IGVPYWLPLAIWTGVVSQFIPTLGTYLAIGLPAVIAAAAQPLDAVWVILFGTAYQQIENY 306

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            L P +    + +     F  ++ G    G +G  +   ++A+I  I +      +  +E
Sbjct: 307 ILHPRITSRTVSIHPAVAFGSVIVGASLFGAIGALVSVPVVAVIQAIVETYGHRYELVQE 366


>gi|226939438|ref|YP_002794511.1| integral membrane protein [Laribacter hongkongensis HLHK9]
 gi|226714364|gb|ACO73502.1| integral membrane protein [Laribacter hongkongensis HLHK9]
          Length = 367

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/342 (14%), Positives = 121/342 (35%), Gaps = 15/342 (4%)

Query: 13  RWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           R ++   ++  L+    L     P  +A  + + + P+      +   + T    +  + 
Sbjct: 15  RLLLALAVVFCLWLVWHLADVLMPFAAAFALAYMAVPVVDRL-GRMGVNRTLATNLMLLL 73

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + L ++ +L +    + +++ LV ++         +  WL                   
Sbjct: 74  AIALVVLVMLLVIPMFVSQIQGLVDRL-------PGLVDWLERTVSPRIHEFFGITVHFD 126

Query: 130 PQSLKILSETFLKT--NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
             S+K      L +  + +  +    +  G+  L +  +++   +  F+  RD  ++   
Sbjct: 127 VNSIKTGLAAHLGSVRSALANLLPALTSQGIALLTFLTNVLLTPLLAFYLLRDWHTLLAS 186

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           ++ L    + A    +   +  ++     G   + +      G  +   G+ S  A+GV+
Sbjct: 187 VERLLPPRWRAGVTSLCGQIDHMVGEYLRGQLAVMLIMAAFYGGGWLAVGLDSGFAIGVV 246

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF--IVDKTLRPFLVGGPI 305
             ++  IP         ++    I         L +W    +   +    + P LVG  I
Sbjct: 247 AGLLVAIPYVGAFIGVLLATMAAILQYGTLPEMLMVWSVYAVGQTLEGFVITPRLVGDRI 306

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            L      F L+      G +G+ +     A++ V+W+E++ 
Sbjct: 307 GLHPALVIFALMAAGSLFGFVGVLLALPASAVLIVLWREALA 348


>gi|125973937|ref|YP_001037847.1| hypothetical protein Cthe_1423 [Clostridium thermocellum ATCC
           27405]
 gi|125714162|gb|ABN52654.1| protein of unknown function UPF0118 [Clostridium thermocellum ATCC
           27405]
          Length = 368

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/342 (12%), Positives = 115/342 (33%), Gaps = 17/342 (4%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS------TFLAVIATVS 69
           IM  +   +   K FF  +  A ++      +      +  ++            +  + 
Sbjct: 25  IMRAVWKFIVLFKPFFMGIAVAFVLNRPCMAVERFLNKRLFKNRLKVLVRGIAITVTYLV 84

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ L  + + F+    +  ++  +S +     +   +   LS++ G           LS 
Sbjct: 85  VLLLITLIISFIIPELIKSIQVFLSNMGAYIDNFRDLTNELSELLGLERID------LSS 138

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              L +     L ++  + +P+  S      L +  +++  ++   +       +  Q  
Sbjct: 139 LDKLILEYTNRLGSSLTELMPKIIS-ITTGVLSFFATLVITVVFSIYILAGKERLIGQCK 197

Query: 190 SLGEHLFPA----YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            +     P         + R+V  V      G    A   G +      +      + + 
Sbjct: 198 KVFSTYLPECLYKKGAYVYRVVVDVFNKYIYGQLAEAFILGSLCFIGMVIFRFEYALLIS 257

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           V+ A+ A++P          +  LL+  +   A    ++  +   + +  + P +VG  +
Sbjct: 258 VLIAVTALVPYFGAYIGGFCAFMLLLMISPTKAIWFLVYLVVLQQLENNLIYPRVVGSSL 317

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            LP +      + G    G +G+  G  +  ++  + +  ++
Sbjct: 318 GLPGIWVVLAAIVGAGVGGPIGVLTGVPIATVLFTLLRNDVL 359


>gi|298245661|ref|ZP_06969467.1| protein of unknown function UPF0118 [Ktedonobacter racemifer DSM
           44963]
 gi|297553142|gb|EFH87007.1| protein of unknown function UPF0118 [Ktedonobacter racemifer DSM
           44963]
          Length = 439

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 59/335 (17%), Positives = 121/335 (36%), Gaps = 21/335 (6%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
              +L ++ + F   P+ +  +           V+AT+ V  + +  L +L Y       
Sbjct: 37  IIILLLSMAVAFLLTPLVNFLVKYHVPR-----VVATLLVYVVVLGALGYLSYLLAA--- 88

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF-- 148
              S +  +      +  +   IP        +   +  PQ     +   +++   +F  
Sbjct: 89  ---SLIAQSLAFSDTIQSYAKAIPDNYANFIKYLNDIKIPQKNIDDTIASVQSKANEFAF 145

Query: 149 -IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            +   A  F  + ++  ++I  +++  F+   DG  I   L SL    F          +
Sbjct: 146 TLTNNALSFVTVLVNAFINIFLIVVLSFYLTVDGKRIRDSLVSLSPKRFLPNVLLFEDAL 205

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWL---AGVPSHVALGVITAIMAMIPGGAPISFTA 264
            +V+ +   G   +A+  G+++G    +    G    +  GV+  +   IP   P   + 
Sbjct: 206 SRVVGNYIRGQLTLALIVGILVGVICAVNPPLG-KYALICGVLAFLFETIPMVGPALASI 264

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIV--DKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             + L +         L + G      V     L P +VG  + L  +     L+ G + 
Sbjct: 265 TPLLLSLLLPDPFPRTLIVAGCFVALQVIESNILGPRIVGHAVGLHPVAAILSLLIGAQL 324

Query: 323 MGLLGLFIG-PVLMALIAVIWKESIMAIKENKEKI 356
            G+ G  +  PV+ AL  V+      A  E+ ++I
Sbjct: 325 FGVFGALLATPVVAALWVVVASIYRSARGESADQI 359


>gi|302385667|ref|YP_003821489.1| sporulation integral membrane protein YtvI [Clostridium
           saccharolyticum WM1]
 gi|302196295|gb|ADL03866.1| sporulation integral membrane protein YtvI [Clostridium
           saccharolyticum WM1]
          Length = 375

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 54/323 (16%), Positives = 114/323 (35%), Gaps = 16/323 (4%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           FF P +   II   + P+      + +      +V+  V+V+ L I  L FL    + E 
Sbjct: 34  FFLPFVIGWIIAVIANPLVRFLEKRLKIVRKHSSVMIVVAVLALIITVLYFLLSKLISEA 93

Query: 90  KELVSKV--------VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
                 +        +   +  + V   L  +P  +  S    +  +H           +
Sbjct: 94  AGFAGDIPKYYESAWIEIQKLLLQVEGLLQFLPENIQVSV--NQFFTHIGEYLN----VM 147

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                      A           +  I  I + + F  D   I + +          Y++
Sbjct: 148 VQKIASPTVTVAGNVVKSIPAALVYTIVTIFSSYLFIVDRDKIMEVIRPYIPAGGTKYFR 207

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPI 260
            + +   +++   FL    I      VL + + + GV   + L +I +I+  +P  G   
Sbjct: 208 YLKKDAKRLVGGYFLAQFKIMFIIAAVLAAGFLVLGVNYALLLAIIISILDFLPILGTGT 267

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
                ++  L+ G       L +   + L ++ + ++P +VG  + L  L T   L  G 
Sbjct: 268 ILIPWAVIRLVAGEYAFGFGLLVIYVLTL-VLRQVIQPKIVGDTMGLDPLMTLLFLYLGF 326

Query: 321 RTMGLLGLFIGPVLMALIAVIWK 343
           +  G+ G+ +   +  L+  +++
Sbjct: 327 KISGIAGMILAVPVGMLLINLYE 349


>gi|134094948|ref|YP_001100023.1| hypothetical protein HEAR1742 [Herminiimonas arsenicoxydans]
 gi|133738851|emb|CAL61898.1| putative permease [Herminiimonas arsenicoxydans]
          Length = 387

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 54/331 (16%), Positives = 115/331 (34%), Gaps = 20/331 (6%)

Query: 16  IMFIILVSLYFL------KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           I   IL S+ F+        FF P++  + I +T  P+       +        ++ T+ 
Sbjct: 36  ISLTILASVAFVFALSAAHKFFIPLVFGIFIAYTLNPLVVWLERIRIPR-----MVGTLF 90

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS-----DIPGGMWASELWT 124
           V+   +   L+       E   ++  +  A Q      + L       I     A+    
Sbjct: 91  VIAAILSSALWTANNLRDEFNSILVSLPTATQKLTRSLKHLQKDQTSTIQQMQAAATEIE 150

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           K  +    ++ L +       +  + ++     M    +   ++ +I  +FFF   G   
Sbjct: 151 KATNQAAGVRPLVKNTAAEQSVFNLSQWLWAGSMGAAAFASQVLMVIFLVFFFLVSGDMF 210

Query: 185 SQQLDSLGEHLFPAYW--KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            ++L  +      +      I   +   I+   L + +  I  GL++  A    G+ +  
Sbjct: 211 KRKLVKISGRSLSSRKITVNILDAINTSIQHYMLMLLVTNILFGLLMWIALRWVGLENAG 270

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG--AIELFIVDKTLRPFL 300
           A  V    + +IP   P+   A +           ++ L + G   I   +V   +  ++
Sbjct: 271 AWAVAAGFLHIIPYFGPLLIVAATGVTAFMQFETFSSVLTVAGLTLIIATLVGTFVTTWM 330

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
            G   K+  +  F  L+      G+ G+ +G
Sbjct: 331 TGRIAKMNTVAVFVSLLFWTWLWGVWGMLLG 361


>gi|90416228|ref|ZP_01224160.1| putative membrane protein [marine gamma proteobacterium HTCC2207]
 gi|90331953|gb|EAS47167.1| putative membrane protein [marine gamma proteobacterium HTCC2207]
          Length = 360

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 113/325 (34%), Gaps = 30/325 (9%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L A+ I     P+ S   ++     + +A++  V ++ L  + L  +    +   +
Sbjct: 32  LVPFLLAVFIAMIVSPLLSWLKNR--SIPSAIAILMIVVLIMLVGLMLTAVIGSSVENFR 89

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           +              +P +   +      ++ W          +    +F  +  + F  
Sbjct: 90  Q-------------DIPLYSEKLSAMSVGAQSWLSLRGVDIDPQQWQNSFDPSVVMSFAG 136

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              + FG +  +  + ++ +I  L              + L         ++      + 
Sbjct: 137 STLASFGSVMTNAVMILLTVIFIL-------TENVGFGEKLRMARGKDVSEEWLNRFSES 189

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
           + S     T I++  GL++     + GV   V   ++  ++  +P  G+ I+     +  
Sbjct: 190 VHSYLAIKTGISLVTGLLIFIWLSILGVDYPVLWALLAFLLNFVPTVGSFIAAVPAVLLA 249

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            ++  +F+A        +   ++   + P  +G  + L  L  F  LV       L G  
Sbjct: 250 TVQLGVFSAGLTLAGFVVVNLVMGNAVEPRWMGKGLNLSPLVVFVSLV-------LWGWV 302

Query: 330 IGPVLMALIAVIWKESIMAIKENKE 354
           +GPV M L   +     +A++  +E
Sbjct: 303 LGPVGMLLSIPLTIMIKIALENQEE 327


>gi|125974914|ref|YP_001038824.1| hypothetical protein Cthe_2429 [Clostridium thermocellum ATCC
           27405]
 gi|256003829|ref|ZP_05428816.1| sporulation integral membrane protein YtvI [Clostridium
           thermocellum DSM 2360]
 gi|281418620|ref|ZP_06249639.1| sporulation integral membrane protein YtvI [Clostridium
           thermocellum JW20]
 gi|125715139|gb|ABN53631.1| protein of unknown function UPF0118 [Clostridium thermocellum ATCC
           27405]
 gi|255992167|gb|EEU02262.1| sporulation integral membrane protein YtvI [Clostridium
           thermocellum DSM 2360]
 gi|281407704|gb|EFB37963.1| sporulation integral membrane protein YtvI [Clostridium
           thermocellum JW20]
 gi|316939125|gb|ADU73159.1| sporulation integral membrane protein YtvI [Clostridium
           thermocellum DSM 1313]
          Length = 356

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 59/362 (16%), Positives = 127/362 (35%), Gaps = 28/362 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFA----PVLSALIIGFTSWPIYSSFISKKEESSTF 61
              + I+  ++ F +L ++Y +  +F     P L A+II   + P+ S   +K   +   
Sbjct: 8   KQKKAIISLILAFTLLFAIYIIMNYFLALILPFLIAVIISSVNEPVISYMETKLRLNRKI 67

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            +VI+ +  + + I+ +    +    E+ +L S +    +                 AS 
Sbjct: 68  ASVISIIMTVSIIIILISLCIFKVYYELVKLNSNLPYYMES------------FSATASA 115

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL----------DYCLSIIFMI 171
            + +       L       L+ N    +P+  +  G I               +     +
Sbjct: 116 CYDRMSVFYYHLPKGLADILENNFKSLLPKLETITGKIAESIISSIASIPKAAVFTAVTL 175

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
           ++ +F   D   I   +           +  I       I        I+     +    
Sbjct: 176 LSSYFISSDRKKIRNFIYRQLPVNLKQGFIGIKSDAISTIAGYIKAQLILMSITFIETTL 235

Query: 232 AYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
              +      V +G I AI   +P  G  I    +  + +I GNI  A  +     + + 
Sbjct: 236 GLIVIKCEYAVLIGFIAAIADALPIVGTGIVLFPLIGWNIITGNIQIALGITAVYLLGV- 294

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           I+ + + P +V     +    T   +  G+   G  GLFIGP+ + ++  + K  ++++ 
Sbjct: 295 ILRQIIEPKIVSSQTGIHPFATLVSMYLGMTLFGFPGLFIGPIFVTILKSLHKSGLISVW 354

Query: 351 EN 352
           ++
Sbjct: 355 DD 356


>gi|254422704|ref|ZP_05036422.1| conserved domain protein, putative [Synechococcus sp. PCC 7335]
 gi|196190193|gb|EDX85157.1| conserved domain protein, putative [Synechococcus sp. PCC 7335]
          Length = 353

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 56/343 (16%), Positives = 124/343 (36%), Gaps = 21/343 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVL----SALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            ++R++++F+   +   L  +F  V+    +A I+ F                      I
Sbjct: 14  SLLRYLLLFVCGWAAVALLEYFETVIIIFTAATILAFLLSYPVRWLRRFLPH--GVAVSI 71

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
                + +    +  +    + + + L+  +            +L+ +   + A E + +
Sbjct: 72  VFAIALMVIGGLITTIALVVLSQGQPLIDNLS----------DFLTSLTPRIEALEQFLQ 121

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             + P  L+ L   F        +           ++  L  + + +   F   DG  + 
Sbjct: 122 RRNLPVDLQSLGAQFRDQAVG--LLGVGVNLLQGLVNNFLHSVLIAVVTLFMLFDGARLW 179

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L    + L     ++I+  V       F G  +++I  G+     + L GVP    L 
Sbjct: 180 YFL---IKRLPLDQQRRITETVQDSFLGFFWGRLLLSIFFGVSTFVVFLLLGVPYAPTLA 236

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           VI  +  +IPG       ++    L+  +I  AT   +   +   + +  L P ++   +
Sbjct: 237 VIAGVFDLIPGIGATLGVSLISLFLLSQSILLATQSIVICVVLQQVEENLLLPRIMKDSL 296

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            +  +  FF L+ G R  G+LG+F+   + + I  + +   M 
Sbjct: 297 NINPVVMFFALIVGARIAGVLGIFLSIPVASTIINLLEIDEMK 339


>gi|269928762|ref|YP_003321083.1| hypothetical protein Sthe_2852 [Sphaerobacter thermophilus DSM
           20745]
 gi|269788119|gb|ACZ40261.1| protein of unknown function UPF0118 [Sphaerobacter thermophilus DSM
           20745]
          Length = 378

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 65/201 (32%)

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           T   + +            D  +    +I    +   D   +      L    +      
Sbjct: 168 TQVAESLLANILGAASSVFDLGVKTFGIIFVAIYLVIDSRRVKAAYLRLTPSHYRRDAMV 227

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +       +     G+TI  + +G + G A W+ GVP  + LG   ++ A+IP       
Sbjct: 228 LWDEFGSSLSRYLGGLTISLLVQGALSGIALWILGVPYPLLLGAWVSLTAIIPYLGAFLG 287

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ L    +      + +       +    L P + G  +++  +     ++     
Sbjct: 288 AIPAVLLGFYQSPTTGVLVIVLYIAIQQVESNLLTPRIQGQAVRVHPIIVLLSVIAASEI 347

Query: 323 MGLLGLFIGPVLMALIAVIWK 343
            GL G      ++A++ V+  
Sbjct: 348 DGLRGAIFAVPILAVLRVLLD 368


>gi|290894088|ref|ZP_06557061.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|290556343|gb|EFD89884.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
          Length = 345

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 115/361 (31%), Gaps = 26/361 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
            + L  + + R  +  +I   LY L+     +L   I  +    + +  + +       +
Sbjct: 5   SSFLQNRSVRRVGVFILIAFVLYLLRSQMNIILLTFIFSYLITRLENFILRRISIYRQII 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    +  + I   +        ++ +LV                             
Sbjct: 65  VLLLYALIAAVIIFVFVKYIPVLADQINQLVKFGNTFLTT-------------------- 104

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
              +      +  L+  F      +        +        +++   ++   FF     
Sbjct: 105 -DSNNDFINYIVSLANQFDIMKYTEQGVSMILTYLTNVGTVLMNVFIALMLSLFFSLGKD 163

Query: 183 SISQQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            +    +          +++                    IIA+   ++   A W+ G P
Sbjct: 164 HLVSFTNQFSTSKIGFIYEEVKFFGSKFVATFGKVIEAQFIIALVNTILTTIALWILGFP 223

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             + L ++  ++ +IP  G  IS   ++I     G +     + +   I   +    L P
Sbjct: 224 QLMTLSIMVFLLGLIPVAGVIISLVPLTIIGYSIGGVEYIFYILVVVIIIHALESYVLNP 283

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKEKIS 357
            L+     LP   TF  L+ G    G+ GL +G PV+M  + V+   +   I++ K+ IS
Sbjct: 284 KLMSAKTNLPVFYTFIILIFGEHFFGIWGLIVGIPVVMFFLDVLGVTNQEEIEQPKDTIS 343

Query: 358 S 358
            
Sbjct: 344 H 344


>gi|209520430|ref|ZP_03269191.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
 gi|209499122|gb|EDZ99216.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
          Length = 364

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 55/350 (15%), Positives = 135/350 (38%), Gaps = 18/350 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             ++ ++ V +Y        ++ A+   +  +P+ +     +      +A IA V V+ +
Sbjct: 15  AFLIGLLFVIIYIASTTVLVIVYAVFFSYLIYPMVALVERVRPRRVPRVASIAFVFVVVV 74

Query: 74  FIVPL--LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            ++ +           +   LV ++    +  +      + +P   +   L  + +   +
Sbjct: 75  ALLAVVGSVFGVELQDQASRLVKQLPALLRTDVQ-----NRLPLPHFLEPLRERIVDFVR 129

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI---IALFFFYRDGFSISQQL 188
           S            G D     A   G+  +    ++I+++   I  F   +DG  +    
Sbjct: 130 SQI--------ETGSDKAVPLARSVGLGVVHAASNVIYLVLIPILSFLLIKDGEQMRDAF 181

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +L        W +I   V  ++      +  +++   L  G A+ L GVP    L V  
Sbjct: 182 LALLNRPHRTLWSEIVVDVNVLLSKYVRALLFLSLATLLCYGVAFSLLGVPYAFLLAVSA 241

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           A++  +P   P++  A+++ + +     +   L ++  +     D  L P+L+   +++ 
Sbjct: 242 ALLEFVPFAGPLAAIAITLVVAVFSGYPHLLWLLIFIGLYRLFQDYVLNPYLMSEGVEVS 301

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                 GL+ G +  G+ G+F+   ++A + ++   + M   E  E  ++
Sbjct: 302 PFLVIVGLLAGDQLGGVAGIFLAVPVIATLKIVVGRARMFYAELHEHDAA 351


>gi|23100493|ref|NP_693960.1| hypothetical protein OB3038 [Oceanobacillus iheyensis HTE831]
 gi|22778726|dbj|BAC14994.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 364

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/324 (15%), Positives = 119/324 (36%), Gaps = 7/324 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           FI    L  +     P++ A I+ + + P+ +  + +K        +I  + ++ +  + 
Sbjct: 28  FIFTPLLQLIGAVALPIIGAGILYYLTKPVMNFLVKRKVP-KILSIIIVFLLIISVIALF 86

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +LF++     +   L+  V    +       +          S +  + +S         
Sbjct: 87  VLFIWPIARDQANRLIESVPGMIKMVEDFISY-----WQQNYSSIPDQVISAINDFAQDI 141

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
             +L+    +      +  G   +   L +I +   LFF  +DG  +   +  L +    
Sbjct: 142 PAYLENATSNIFGFLGAFIGQ-LVSIVLGVILIPFFLFFMLKDGNKLVPFITQLFDEKKA 200

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
              + +   + KV+ S   G  ++++  G++L   Y + G+   V L +   +M +IP  
Sbjct: 201 KNLQNLLSKIDKVLTSFIQGQLLVSLAVGILLLIGYLIIGLQYSVILALFGMLMNVIPFL 260

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P      ++ +    +  N   + +   +   I    + P ++G  + L  L     ++
Sbjct: 261 GPYIAVIPALLVGAFQDPMNIFWVAIIMLVAQQIESTLISPNVMGQVLNLHPLTVITVIL 320

Query: 318 GGVRTMGLLGLFIGPVLMALIAVI 341
                 G +G+     + A+I  I
Sbjct: 321 AAGSIAGFIGILFAVPIYAIIRTI 344


>gi|148254854|ref|YP_001239439.1| hypothetical protein BBta_3439 [Bradyrhizobium sp. BTAi1]
 gi|146407027|gb|ABQ35533.1| putative membrane protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 370

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 86/246 (34%)

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
            D+P  +               +   ++     +    + R+ + F          +  +
Sbjct: 120 KDLPQSLTQVVQEFVETPWGVWVVGRAQDVNIGSATGPLARYIAAFFGSVFHTSAYVAVL 179

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           + A  +F          L  +         +++  ++   +R   +G +I     G +  
Sbjct: 180 LFASGYFAVQPARYVDGLLRMVPADRRPRAEEVIELLGSTLRRWLIGQSITMAVVGTLTA 239

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
               L GV + +ALG+I+AI A +P   P+  + + I +        A  +    A   F
Sbjct: 240 IGLLLLGVAAPIALGLISAIFAFVPYVGPVLASLLGILMAAMQGPTIALYVIALYAAIHF 299

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +    + P +    ++LP + T F  +     +G +G+ +   L  ++ +      +   
Sbjct: 300 VEGNLVTPLVQAEAVELPPVLTLFATLIFGLLLGPIGVLLAAPLAVVVLLAVNTLYIEGM 359

Query: 351 ENKEKI 356
             + ++
Sbjct: 360 LGETRV 365


>gi|16800526|ref|NP_470794.1| hypothetical protein lin1458 [Listeria innocua Clip11262]
 gi|16413931|emb|CAC96689.1| lin1458 [Listeria innocua Clip11262]
          Length = 345

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 121/358 (33%), Gaps = 26/358 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  + + R  +  +I   LY L+     +L   I  +    + +  + +       + ++
Sbjct: 8   LQNRSVRRVGVFLLIAFVLYLLRSQMNIILLTFIFSYLITRLENFILRRISIYRQIIVLL 67

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V +  + +   +        ++ +LV       +                  +E    
Sbjct: 68  LYVLIAGVIVFVFVKYIPVLADQINQLVKFGNSFLKT--------------DSNNEFINY 113

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            +S      I+        G+  I  + +  G + ++    +   ++   FF      + 
Sbjct: 114 IVSLANQFDIMK---YTEQGVSMILTYLTNVGTVLMN----VFIALMLSLFFSLGKDHLI 166

Query: 186 QQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              +          +++                    IIA+   ++   A W+ G P  +
Sbjct: 167 SFTNQFSTSKIGFIYEEVKFFGSKFVATFGKVIEAQFIIALVNAVLTTIALWILGFPQLM 226

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L ++  ++ +IP  G  IS   ++I     G +     + +   I   +    L P L+
Sbjct: 227 TLSIMVFLLGLIPVAGVIISLIPLTIIGYSIGGVEYIFYILVVVIIIHALESYVLNPKLM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKEKISS 358
                LP   TF  L+ G    G+ GL +G PV+M  + V+   +   + + K+ IS 
Sbjct: 287 SAKTNLPVFYTFIILIFGEHFFGIWGLIVGIPVVMFFLDVLGVTNQEEVNQPKDTISH 344


>gi|295091387|emb|CBK77494.1| Predicted permease [Clostridium cf. saccharolyticum K10]
 gi|295116280|emb|CBL37127.1| Predicted permease [butyrate-producing bacterium SM4/1]
          Length = 418

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/349 (13%), Positives = 118/349 (33%), Gaps = 23/349 (6%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSF-----------ISKKEESSTFLAVIATVSVMCLFI 75
           L+G  AP++   I+ +   P+Y+             +  ++ +      + T + + +  
Sbjct: 43  LRGIAAPIIYGSILAYLLAPVYNRVTGAGLRVLSGRLKSRKHAEVIARAVGTAASLAVIF 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPG------GMWASELWTKHLS 128
           V +  L    + ++ + +     A    +  +  W+  +         +    + T    
Sbjct: 103 VVIAGLLQLIIPQVVDSIMGFQAAFPTYLQNLYSWIQKLLADNSEIEQIVIGNIQTAVSL 162

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               L+     F     ++F+   +S    +  ++  + +  +I + +       +  Q 
Sbjct: 163 FDGWLEQAFTRFDMNRLVEFLTGVSSSL-FLLFNFVKNWLIGLIVMVYMLNIKDRLITQA 221

Query: 189 DSLGEHLFPAYWKK----ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             +                 R+V ++     +G  + ++  G++      +   P  + +
Sbjct: 222 KKIVYGCLSIRLANHVISEMRLVHRMFGGFIIGKILDSLIIGILCFIGTSILHTPYALLV 281

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            VI  +  +IP   P      S  L++  +      L LW  I   I    + P ++G  
Sbjct: 282 SVIVGVTNVIPFFGPFIGAIPSGILVLLVSPVQCAVLLLWILILQQIDGNIIGPKILGNS 341

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             L      F ++      G +G+ I     A+I  + K+++      K
Sbjct: 342 TGLASFWVLFSILIFGGLFGFVGMIIAVPGFAVIYDLVKKAVNYSLRRK 390


>gi|77163728|ref|YP_342253.1| hypothetical protein Noc_0190 [Nitrosococcus oceani ATCC 19707]
 gi|254435334|ref|ZP_05048841.1| conserved domain protein, putative [Nitrosococcus oceani AFC27]
 gi|76882042|gb|ABA56723.1| Protein of unknown function UPF0118 [Nitrosococcus oceani ATCC
           19707]
 gi|207088445|gb|EDZ65717.1| conserved domain protein, putative [Nitrosococcus oceani AFC27]
          Length = 356

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/356 (13%), Positives = 114/356 (32%), Gaps = 20/356 (5%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           +PQ +   +++ +  +++  +    APVL++L+I +    I                 + 
Sbjct: 14  DPQVVGLAILLAVGFITVVLMGRMLAPVLASLVIAYLLEGIIGYMERWHCPR-WLAVTLV 72

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSK----VVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++ M      +  L      ++ E   +    +    +  + +P +  ++  G    +L
Sbjct: 73  FITFMAALFSLIFGLLPLLSQQLTEFFQQLPVMIARGQELLLSLPEYYPNLFSGEQVYDL 132

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            +   S                    +   +    +  +   + ++ M + +FFF +D  
Sbjct: 133 MSALRSELAQW------------GQKVLSVSLASVVGLITLAVYLVIMPLLVFFFLKDKA 180

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +   L+            ++   V   I +   G  +  +    V    +   G+   +
Sbjct: 181 RLIGWLEQYLPR-ERKLAAQVWHDVDFQIGNYVRGKFLEILIVCAVTAITFTFMGLQFSM 239

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L V+  +  +IP  GA  +   V+     + G   +   L     I   +    L P L
Sbjct: 240 LLSVLVGLSVIIPYIGAVAATLPVAFVAYFQWGFSIDFAYLLGAYGIIQALDGNVLVPLL 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
               + L  +     ++      G  G+F    L  L+  + K         +  I
Sbjct: 300 FAEVVDLHPVAIIVAILVFGGFWGFWGIFFAIPLATLVQAVLKAWPSLPPPEESTI 355


>gi|228993129|ref|ZP_04153051.1| hypothetical protein bpmyx0001_38650 [Bacillus pseudomycoides DSM
           12442]
 gi|228766588|gb|EEM15229.1| hypothetical protein bpmyx0001_38650 [Bacillus pseudomycoides DSM
           12442]
          Length = 315

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/311 (16%), Positives = 112/311 (36%), Gaps = 11/311 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L A  I +   P+      +            T++++ ++I+    L Y       
Sbjct: 6   ITPFLIACFIAYLLHPLIEKLYKEGMPR--------TLAILLIYILFFGGLGYGIYKGTP 57

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            +++++   N+     P+++      M      T +       K+          I  + 
Sbjct: 58  VVIAQLQEINK---QFPQFMKMYDSWMDGVTEQTDNFPSFIHEKVKQIFVGIEMKIQALL 114

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     LD  L I  +   +F+  +D          L    + +  + +++ + K 
Sbjct: 115 NKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHVFWKLVPSKWRSTGQVLAKEIDKS 174

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G   + +  G V   ++W   +   + LG+I  +  +IP   PI     ++ + 
Sbjct: 175 LGSYIRGQLFVCLVLGGVSALSFWFIAMKYPLLLGIIVGVTDIIPYFGPILGAIPTLMIA 234

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +        +  AI  F+    L P++VG  +++  +     L+ G    G++GL I
Sbjct: 235 ATVSTNLFIKAGIALAILQFVESNILSPYIVGKSLRMHPVIIMLALLIGGEIGGIVGLLI 294

Query: 331 GPVLMALIAVI 341
              ++A+I  +
Sbjct: 295 AVPILAVIRTV 305


>gi|167768349|ref|ZP_02440402.1| hypothetical protein CLOSS21_02905 [Clostridium sp. SS2/1]
 gi|167709873|gb|EDS20452.1| hypothetical protein CLOSS21_02905 [Clostridium sp. SS2/1]
 gi|291560321|emb|CBL39121.1| Predicted permease [butyrate-producing bacterium SSC/2]
          Length = 391

 Score = 75.6 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/330 (14%), Positives = 106/330 (32%), Gaps = 10/330 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEES----------STFLAVIATVSVMCLFIV 76
           L     P     +I +   P+ + F                      +I+ + ++   IV
Sbjct: 47  LWEILFPFFMGFLIAYILNPVVAFFQRNVSMKLLKKKSANAQRGLAILISYLVMVGFIIV 106

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L F+       ++EL   +    +  + +     +    M+  ++     +        
Sbjct: 107 CLRFIIPQLYDSIRELSLMIPDIYKSIMSIFEHYRENSTDMFPGQIADMIETKTLPKLFE 166

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               L TN +  +   +  F     +  ++ I  I      +    +  + + ++    F
Sbjct: 167 LTNNLLTNIVPMLYEASMSFAKGLFNLFIAFIVSIYMTIDKFILKNAGKRLVLAIFNENF 226

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                +  +    +     +G +I ++  GL+   A  +  +P  V + VI  +  MIP 
Sbjct: 227 SYRVLRTLKDCHNIFSGFIIGKSIDSLIIGLLAFVAMTILKLPYTVLISVIIGVTNMIPY 286

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             PI       ++L   +        +   +        L P ++G    +  L   F +
Sbjct: 287 FGPIIGAVPGAFILFIVSPTKCLIFIIMVFVLQQFDGLILGPKILGESTGVRPLLILFSI 346

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
             G    G LG+F+G    A +  +    +
Sbjct: 347 TVGGAYFGPLGMFLGVPFFATVQFLIGNWV 376


>gi|297624176|ref|YP_003705610.1| hypothetical protein Trad_1953 [Truepera radiovictrix DSM 17093]
 gi|297165356|gb|ADI15067.1| protein of unknown function UPF0118 [Truepera radiovictrix DSM
           17093]
          Length = 373

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 93/302 (30%), Gaps = 12/302 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           +  +  + L+ L   F      L+ G       S F         +   +  +    +F 
Sbjct: 35  LTVLGALLLWRLADIFLLAFIGLLFGVFLDAASSLFRRYLSLPRGWSLALTLLLFAGVFA 94

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + L  L      +   L   +    Q+   +   L   P       L          L  
Sbjct: 95  LALSLLGPTLAAQAVALFEGLPRFLQN---LEAELGGTPWYDSLRALLPAPDEGADRLGQ 151

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +    L       I    +        + + +   I   ++         + L SL    
Sbjct: 152 MLSQVL-AQTTQLITSLTTLVFYGVFIFFVGLFLAIHPRYY--------QEGLVSLWPPP 202

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                ++++  +   +R+  +G  I  +  G V G   W+ GVP    LGVI A+   IP
Sbjct: 203 QRRRAREVTSKLGYTLRAWLVGQLISMLLIGTVTGVGLWVLGVPLAFVLGVIAALFEFIP 262

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P+     ++ L    +   A  + L+  +   +    + P +    + LP +    G
Sbjct: 263 NIGPVLAAVPAVLLAFAQSPLLALYVALFYLVIQQLEGNVIHPLIQRRAVDLPPVLGIIG 322

Query: 316 LV 317
           + 
Sbjct: 323 VF 324


>gi|110634895|ref|YP_675103.1| hypothetical protein Meso_2554 [Mesorhizobium sp. BNC1]
 gi|110285879|gb|ABG63938.1| protein of unknown function UPF0118 [Chelativorans sp. BNC1]
          Length = 356

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 96/262 (36%), Gaps = 4/262 (1%)

Query: 96  VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASR 155
           ++L +Q      + +  +P  + A E              L E   ++     +    + 
Sbjct: 93  ILLGSQLQAQFGQLIERVPDLLRALE---DRFGIDNLEGRLVEQIQQSMARTSLLSNVAG 149

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
           F         +++ +++A  +   D  S  +    L          +   ++   +R   
Sbjct: 150 FSSAIFGSLANLLLVMVAGIYLAADPRSYRRGFFLLFPRRARREAAETLDVLYMALRLWL 209

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNI 275
           LG  +     G       WL GVPS +ALGVI  ++  +P   PI   A ++ + +  + 
Sbjct: 210 LGQLLSMFLVGAASAVGLWLLGVPSALALGVIAGLLEFVPVIGPILGAAPAVAVGLAESP 269

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVL 334
             A  + L   +   +    + P +    ++LP   T F ++G     G LG+    P+L
Sbjct: 270 VTAAWVALLYLVIQQLEGNLIMPLIQQRMVRLPPALTIFAIIGFGLLFGPLGILFATPLL 329

Query: 335 MALIAVIWKESIMAIKENKEKI 356
           + +   + K  +    +   ++
Sbjct: 330 VVVFVSVKKLWVRDTLDEDTEL 351


>gi|260886083|ref|ZP_05736457.2| putative membrane protein [Prevotella tannerae ATCC 51259]
 gi|260850602|gb|EEX70471.1| putative membrane protein [Prevotella tannerae ATCC 51259]
          Length = 378

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/361 (13%), Positives = 127/361 (35%), Gaps = 22/361 (6%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFA--------PVLSALIIGFTSWPIYSSFISKKE 56
           M+  +      I   ++V    L G+          P   A  + +  +PI      K +
Sbjct: 1   MMKKEITFDRFIRGALVVGGLILAGYIISYLSTVLLPFFVACAVAYLLFPIVRFLQYKCK 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
             +  L++   ++++   +  L ++     L+    + +V +       +   +      
Sbjct: 61  LKNRILSIFVALALLLGTLTALAYIIVPPFLDEFSHIKEVAINFLKDPKMQEKV----IP 116

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR---FASRFGMIFLDYCLSIIFMIIA 173
                   + +S  +  ++LS   ++      +P+          + L+   S+I ++  
Sbjct: 117 PHVLHFIQERISAARIEQLLSSKDVQEAAQKILPKAWDVIWSTAGVILNILASLIGLLY- 175

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           LFF  +D    +    +   H      +++   + + +   F G  ++A+   ++    +
Sbjct: 176 LFFLLKDYERYAYGWINFVPHSRREIARQLVGDIKQGMDGYFRGQALVALSNCIMFSVGF 235

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI----KGNIFNATC--LFLWGAI 287
           W+   P  V LG    +++ +P    + F       L+     G  F      + L   +
Sbjct: 236 WIIDFPIPVGLGCFIGLISFVPYLQVVGFIPALFLALLRAADTGQSFWLLFGGVCLVYIV 295

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              + D  + P ++G  + L        L      +G++GL I   +  L+   ++  ++
Sbjct: 296 VQVLQDTIVTPHVMGKIMGLSPAVILLSLSVWGYILGIVGLIIALPVTTLMISYYRRYVI 355

Query: 348 A 348
            
Sbjct: 356 G 356


>gi|297583588|ref|YP_003699368.1| hypothetical protein Bsel_1290 [Bacillus selenitireducens MLS10]
 gi|297142045|gb|ADH98802.1| protein of unknown function UPF0118 [Bacillus selenitireducens
           MLS10]
          Length = 362

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/311 (12%), Positives = 102/311 (32%), Gaps = 6/311 (1%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P+L A ++ +   PI +    K      F   +  +  + L    +  +      +  
Sbjct: 40  FFPLLFAGVLYYLFRPIVNLLSRKFP--RGFSIALLYIGFLGLGAGAISLIGPELQKQFY 97

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L+  V         V      +           +     +         + T     + 
Sbjct: 98  NLMDSVPGIMNDLQYV---FMQLQETDLIEGSGLEEWLDVEDRLEEIGAMISTIAGGLVS 154

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              +  G    +  L    +   LFF  +DG  ++               + + + +   
Sbjct: 155 NTMAFLGT-LFNTLLLFFIVPFILFFLLKDGDRLAPYALKFFSEEKQEEIRPVLQNMDFT 213

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           I     G+ I+    G++  + + + GV   + L +I     +IP   P      ++ + 
Sbjct: 214 ISRYIQGILIVCTFIGVLYYTGFTIIGVEYSLILAIIGMFTNVIPYVGPWLGAVPAVIVA 273

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +  +   A  + +   I   +    ++P ++G  +++  +     ++   +  G+LG+ +
Sbjct: 274 LIHSPLQAFLVIVLVVIIQQVESILIQPNVIGRVMRIHPVTVLLLVLVAGQFAGILGMIL 333

Query: 331 GPVLMALIAVI 341
              + A+  V+
Sbjct: 334 VIPVYAVTKVV 344


>gi|304411431|ref|ZP_07393045.1| protein of unknown function UPF0118 [Shewanella baltica OS183]
 gi|307305247|ref|ZP_07584995.1| protein of unknown function UPF0118 [Shewanella baltica BA175]
 gi|304350286|gb|EFM14690.1| protein of unknown function UPF0118 [Shewanella baltica OS183]
 gi|306911550|gb|EFN41975.1| protein of unknown function UPF0118 [Shewanella baltica BA175]
          Length = 360

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 107/317 (33%), Gaps = 12/317 (3%)

Query: 45  WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
           WP+      K   + T  A +  V  + + ++    L      +   L++ +      G+
Sbjct: 54  WPVAQML--KLGINRTAGASLVIVLFLGIVVLLTFGLIPSVWRQGVSLIADLPSMIDKGL 111

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
              + L +             +      +    +  L T  +  I +    +    L   
Sbjct: 112 LTIQTLIN-------QYPQFINPEQLDLMVGELKKLLDTQHVLDIAKQLIGYSASLLVLM 164

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
           +  I + + +FFF +D   +                +K+   + + I +   G  I  + 
Sbjct: 165 VYAILVPLLVFFFLKDKDQLISGSKRFFP-ANRQLARKVWFEMHQQIFNYIRGKVIEIVV 223

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFL 283
            G+     + + G+   V LGV+T +  +IP  GA +    +++    +    +     +
Sbjct: 224 VGVATYILFAVMGLRYSVLLGVLTGLSVLIPYVGATLVTLPITLVAFFQWGFSSEFGYLM 283

Query: 284 WGAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            G   +  +D   L P L    + L  +     ++      G+ G+F    L +L+  + 
Sbjct: 284 LGYGIIQALDGNLLVPILFSDAVDLHPVIIIAAVLVFGGLWGVWGVFFAIPLASLVKAVI 343

Query: 343 KESIMAIKENKEKISSN 359
                   E+   + ++
Sbjct: 344 NAWPKTEVESLHGLDAS 360


>gi|291526224|emb|CBK91811.1| Predicted permease [Eubacterium rectale DSM 17629]
 gi|291526734|emb|CBK92320.1| Predicted permease [Eubacterium rectale M104/1]
          Length = 437

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/332 (12%), Positives = 109/332 (32%), Gaps = 27/332 (8%)

Query: 14  WMIMFIILVSLYFLKGF----------FAPVLSALIIGFTSWPIYSSFISKK-------- 55
           + +  +   +LY  +GF            P++  L++ +   P+                
Sbjct: 46  FAVSILFFFALYRFEGFAGIWSKLLAAAMPIIMGLVLAYLMNPVMLWLERCFKKLLSKKM 105

Query: 56  ----EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS 111
               +      A+  T SV+ L  +  L +       +  +   +             + 
Sbjct: 106 KSESKLRKVSRALAITGSVIILVAIISLLIAAIVPSVIASISGLMKTLPNDVAAFINMIK 165

Query: 112 DIPGGM-WASELWTKHLSHP-QSLKILSETFLKTNGIDFIPRFAS---RFGMIFLDYCLS 166
           +   G    +EL +  L +    ++  +   L      ++ +  +          ++ + 
Sbjct: 166 NGNFGDSKIAELASTGLQNATDYIEDYATEKLIPEAQKYVAQITTGVISVVRGLFNFIIG 225

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
           II M+  +           + + ++ +        +  R   ++      G  I ++  G
Sbjct: 226 IIVMVYVMSIQETLAGQSKKIIYAVCKPKTGNIIIETIRKTNEIFGGFISGKIIDSLIIG 285

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           ++      +  +PS V + VI  +  +IP   P      S+ +++  + ++A  L ++  
Sbjct: 286 VIAYFGCLILRIPSSVLVAVIIGVTNVIPVFGPFIGAIPSLLIVVIQSPWHALYLLIFIV 345

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           +   +    + P ++G    L      F ++ 
Sbjct: 346 VLQQVDGNIIGPKILGSSTGLSTFWVMFAILI 377


>gi|293376194|ref|ZP_06622439.1| putative membrane protein [Turicibacter sanguinis PC909]
 gi|325838909|ref|ZP_08166715.1| putative membrane protein [Turicibacter sp. HGF1]
 gi|292645181|gb|EFF63246.1| putative membrane protein [Turicibacter sanguinis PC909]
 gi|325490650|gb|EGC92961.1| putative membrane protein [Turicibacter sp. HGF1]
          Length = 370

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/341 (12%), Positives = 117/341 (34%), Gaps = 23/341 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKG--------------FFAPVLSALIIGFTSWPIY 48
           E  LN + I R +++  ILV +  +K                 +P + A+ + +   P+ 
Sbjct: 5   EETLNFKLINRVVLLIGILVGVQVIKICFPIIKPVISALNLIISPFIIAISLAYLLNPLV 64

Query: 49  SSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR 108
             F     + S         +++  F+  +  LFY     +  L+  +         +  
Sbjct: 65  DFFCRLHFKRSY--------AILVTFVSIVGGLFYAIFSLIPYLIVNIQEVLNSMPMLIE 116

Query: 109 WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII 168
            +  +   +    +              S+ F   +                    + ++
Sbjct: 117 KVELLISNLNLDYIDIYKFDFSSLFSENSKFFTLFSSFLSRAGSWLSSASSSFTMIIGML 176

Query: 169 FMI-IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           F++ I L++   + + +  ++ +         +  I +   +V+R    G   +++   +
Sbjct: 177 FLVPILLYYILNNFYELRNRIKNYLITHRHIQFFNILKESEEVVRGYVSGTLAVSLALSI 236

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
           +    + L G+ + V  GV+   + +IP    I  T  +    +  +I+    + +    
Sbjct: 237 IASIYFALIGLDNAVVFGVLIGFLNIIPYVGQIIGTIPAALFGLTVSIWTPVYVIIGVLA 296

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
             FI    ++P +    +    +     ++ G +  G++G+
Sbjct: 297 LNFIEGNFIKPLVFSKAVDFHPIILLTLIIIGGQIFGVIGM 337


>gi|209559400|ref|YP_002285872.1| hypothetical protein Spy49_0869 [Streptococcus pyogenes NZ131]
 gi|209540601|gb|ACI61177.1| hypothetical protein Spy49_0869 [Streptococcus pyogenes NZ131]
          Length = 369

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 110/291 (37%), Gaps = 8/291 (2%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           I  +     F + + ++    + ++   +S +   +   I     ++++      +    
Sbjct: 80  ICLLLAYLTFFILITWIISIVIPDLITSISTLTKFDTITIQ--EVVNNLEHNKLLARTIQ 137

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL--DYCLSIIFMIIALFFFYRDGF 182
            ++     L      + +     F+    +    + +     +++    +   +      
Sbjct: 138 -YIGGDGKLTETIANYSQQLLKQFLTVLTNILTSVTVIASAIINLFISFVFSLYVLASKE 196

Query: 183 SISQQLDSLGEHLFPAYWKKI---SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            + +Q ++L +     Y K+I     ++ +     F+  T+ A+  G +  S  ++  +P
Sbjct: 197 DLCRQGNTLVDTYTGKYAKRIHYLLELLHQRFHGFFVSQTLEAMILGSLTASGMFILRLP 256

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               +GV+ A  A+IP        A+   L++  ++  A    ++  I   I    + P 
Sbjct: 257 FAGTIGVLVAFTALIPVIGASIGAAIGFILIMTQSMSQAIIFIIFLIILQQIEGNFIYPK 316

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +VGG I LP +     +  G    G++G+ I   L A +  + K++I   +
Sbjct: 317 VVGGSIGLPAMWVLMAITIGASLKGIVGMIIAVPLAATLYQVIKDNIQKRQ 367


>gi|159899319|ref|YP_001545566.1| hypothetical protein Haur_2800 [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159892358|gb|ABX05438.1| protein of unknown function UPF0118 [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 425

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/355 (13%), Positives = 127/355 (35%), Gaps = 8/355 (2%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALI---IGFTSWPIYSSFISKKEESSTFLA 63
             + +   +++  I+   + +  F++  + A I   +     P+    + + + S     
Sbjct: 13  TRRVMTATLVVLAIIGLAFVIVNFYSVFVVAFIAFVLSTAIRPLVQ-LLQRLKISPQLGV 71

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           +IA + ++ L +  ++ +      ++  + +K+           ++L         +   
Sbjct: 72  IIAYLLLLALLVGIVVLMAPLITEQITAITAKIPEYYHDAR---QFLISSRSSFIRNLAL 128

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              L  P SL  ++ +       D                   +I  ++  F++  DG  
Sbjct: 129 RLPLDAPISLSGVAPSETSQQQTDVAVSQLVTVVENAGISLFVLIATLLLGFYWTLDGDR 188

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + + L  L        W+ +   +   + +   G  I+ +  G +  +AY L G+   + 
Sbjct: 189 VLRTLLQLVAAEKRENWRSLIAEIQAKMGAFIRGQLILDLSIGALSTAAYLLIGIDYAIV 248

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           LG++  ++  IP  G  +      +  L +G+      + +   +   I    L P ++ 
Sbjct: 249 LGILAGLLETIPILGPVLGAVPPLLITLAQGDTTAFIWVIVATVVIQQIEGTFLVPKVMD 308

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
             + +  + T         T+GL G  +   L A++ +I+   +    E    ++
Sbjct: 309 RAVGVNAVLTLVAFAAFSATLGLAGGILAVPLAAIVQIIFTRLVFNQAETSTNVT 363


>gi|111022136|ref|YP_705108.1| hypothetical protein RHA1_ro05169 [Rhodococcus jostii RHA1]
 gi|110821666|gb|ABG96950.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 421

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/307 (15%), Positives = 105/307 (34%), Gaps = 14/307 (4%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           P+     +K    S    V+  +  + +    + F+    +  +  L  +   +      
Sbjct: 74  PLVDWLQAKGVPRSA-AVVVVLIGSIGIVAGIMTFVVEQFIEGLPGLTEQFEASVT---Q 129

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           +  WL+D P      ++     S  +S++   +              A+  G IF    L
Sbjct: 130 IQGWLTDGPLHFSEDQIRQAGDSVVKSIQDNRQQLTSGA-----LTTATVVGEIFTGALL 184

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           +    +  L FF   G  I + +  L         +         +         +A  +
Sbjct: 185 T----LFTLIFFLYGGSQIWEFVTRLVPTTSRRRVRLAGSQGFGSLIGYVRATVAVAAAD 240

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLW 284
            + +G+   + GVP  + L  +  I A IP  GA ++     +  L+      A  +   
Sbjct: 241 AVGIGAGLAILGVPLALPLASLVFIGAFIPIVGAFLTGFLAVLVALVTKGFLTALIVLGI 300

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
               + +    L+P L+G  ++L  L     +  G+   G++G  +   ++AL+    + 
Sbjct: 301 IIGVMQLEAHVLQPLLLGRAVRLHPLAVVLAITTGIVLAGIVGGLLAVPIVALLNTAVRS 360

Query: 345 SIMAIKE 351
            +    +
Sbjct: 361 LLSTDPD 367


>gi|255068161|ref|ZP_05320016.1| acetyltransferase, GNAT family [Neisseria sicca ATCC 29256]
 gi|255047588|gb|EET43052.1| acetyltransferase, GNAT family [Neisseria sicca ATCC 29256]
          Length = 356

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 65/342 (19%), Positives = 136/342 (39%), Gaps = 10/342 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I+   ++   +  LY L     P + A ++ +   P+      KK       +++  V  
Sbjct: 13  IIMGCVIAAFVWLLYALGDILTPFIVAAVLAYVLNPLVEWL-QKKRIKRGPASMMVMVFA 71

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           + L +  +L +    + +   +VS++  + +     +  WL+ +     A        + 
Sbjct: 72  LLLLLSLMLIIVPMLINQFNNMVSRIPQIVDFTQNRLLPWLNHV-----AGNYVHIDQAS 126

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                      L      ++P    + G +      ++I + + L++F  D    S  + 
Sbjct: 127 VVKWLQSHTGELSNTLKAWVPTLMRQSGNVISGMS-NLILLPLLLYYFLLDWKRWSYGIS 185

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +L    F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G+I  
Sbjct: 186 ALVPRRFIDTYTRITSNMDEVLGEFLRGQLMVMLIMGLVYGVGLMLVGLDSGFAIGMIAG 245

Query: 250 IMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLF-LWGAIELFIVDKTLRPFLVGGPIKL 307
           I+  IP  GA       +I  L++ + ++   +  +   I  F+    + P +VG  I L
Sbjct: 246 ILVFIPYLGAFTGLLLATIAALLQFSTWHGLVMVWIVFGIGQFLESFIVTPKIVGDRIGL 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
                 F L+   + MG +G+  G  L A+  V+ +E + A 
Sbjct: 306 SPFWVIFSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVNAY 347


>gi|77464353|ref|YP_353857.1| Lipocalin-related protein and Bos/Can/Equ allergen [Rhodobacter
           sphaeroides 2.4.1]
 gi|77388771|gb|ABA79956.1| Lipocalin-related protein and Bos/Can/Equ allergen [Rhodobacter
           sphaeroides 2.4.1]
          Length = 375

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 114/326 (34%), Gaps = 14/326 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P +    I +   PI               A+I+           LL +    +  + 
Sbjct: 47  ILPFIVGGAIAYFLDPIADRLERAGLSRVAATALISVAM--------LLVVVLLVLSVIP 98

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            LVS++         + R L          +L  +  +  Q+L  + +T  +  G   + 
Sbjct: 99  TLVSQLTALIDAAPTIFRQLHSFLL-DHFPQLSDETSTARQTLLSIGDTIKERGGE--VA 155

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     ++  + ++ + +  F+   D   +  ++DS          ++++R + +V
Sbjct: 156 NTLLTSAYGVINAMIFMVVVPVVSFYLLLDWDPMVAKIDSWLPRDHAPTLRRLAREIDEV 215

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           +     G   + +  G     A    G+   + +G I   +  IP    +   A++I L 
Sbjct: 216 LAGFVRGQISVCLVLGTFYAVALAAVGLQFGLVVGAIAGAITFIPYVGALIGGALAIGLA 275

Query: 271 IK---GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +    G+  +   +    A+  F+    + P LVGG + L  L   F L       G +G
Sbjct: 276 LFQFWGDWLSIGLVAGIFALGQFLEGNVITPRLVGGSVGLHPLWLLFALSAFGSIFGFVG 335

Query: 328 LFIGPVLMALIAVIWKESIMAIKENK 353
           + +   + A I V+ +  I     ++
Sbjct: 336 MLVAVPVAAAIGVLARFGIRQYTSSR 361


>gi|148544571|ref|YP_001271941.1| hypothetical protein Lreu_1354 [Lactobacillus reuteri DSM 20016]
 gi|184153930|ref|YP_001842271.1| transport protein [Lactobacillus reuteri JCM 1112]
 gi|227363690|ref|ZP_03847801.1| possible permease [Lactobacillus reuteri MM2-3]
 gi|325682899|ref|ZP_08162415.1| permease [Lactobacillus reuteri MM4-1A]
 gi|148531605|gb|ABQ83604.1| protein of unknown function UPF0118 [Lactobacillus reuteri DSM
           20016]
 gi|183225274|dbj|BAG25791.1| transport protein [Lactobacillus reuteri JCM 1112]
 gi|227071273|gb|EEI09585.1| possible permease [Lactobacillus reuteri MM2-3]
 gi|324977249|gb|EGC14200.1| permease [Lactobacillus reuteri MM4-1A]
          Length = 375

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/358 (12%), Positives = 122/358 (34%), Gaps = 28/358 (7%)

Query: 6   LNPQGIMRWM---IMFIILVSL--------YFLKGF-------FAPVLSALIIGFTSWPI 47
           ++ Q    W+   ++ + + +L        +  + F       F P++ +  + +   P+
Sbjct: 1   MSKQKFYHWLFWPLLLLTVATLIWVCTKIQFIFQPFLTFISVVFVPLIISGFLYYMLNPV 60

Query: 48  YSSFIS----KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG 103
              F+     K + S    +++  ++++ + I  +  L    + E+  LV  +       
Sbjct: 61  LKLFLKLRIGKFKMSRGIASLLIVIALILIIIGGISLLIPTIVKEISSLVRNMPQTVSGI 120

Query: 104 IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY 163
             +      I   +  S L    L+                 +  +         +  + 
Sbjct: 121 QTL------INDTVQHSFLRNVDLNTYYRQFDHQIAGYAQTILKGLSERVGDIVGVVTNI 174

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
            +  I + + LF+  +DG  +   +             ++   +   + S   G  I  +
Sbjct: 175 TVVTITVPVMLFYMLKDGSKLGPSIQKWLSPHHAKEVNELLTKMNNTLSSYISGQMIECL 234

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
             G+     Y + G P  + LG++  +  +IP   P    A ++++ +         + +
Sbjct: 235 FVGITTSIGYMIIGQPLALVLGIVAGLTNIIPYIGPYIGIAPALFVALTMAPEKLIWVIV 294

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
              +   I    + P ++G  +++  L     L+      G+ G+ +     A+I  +
Sbjct: 295 VVIVVQQIDGNIIYPNIIGKTLQIHPLTIIMLLLAAGHIAGVGGMILCIPFYAVIKTV 352


>gi|302536611|ref|ZP_07288953.1| integral membrane protein [Streptomyces sp. C]
 gi|302445506|gb|EFL17322.1| integral membrane protein [Streptomyces sp. C]
          Length = 448

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 91/277 (32%), Gaps = 13/277 (4%)

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS 111
           + +          +  +    +  +   F+ +  M  + +L +++         +  W  
Sbjct: 128 LRRLGLPRGLATAVTAILGFVVIGLVGWFVVWQVMENLDDLSNRLREGINE---LKSWAL 184

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
           D P  +   ++     +  +++   +E          I     +   + ++    ++  +
Sbjct: 185 DSPFHVTEKQINDIAKNLSETIGTNTEE---------ITSAGLQGVTVLVEVLTGMLLAM 235

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
            +  F   DG  I   +  L                 + + +   G  ++A+ + + +G 
Sbjct: 236 FSTLFLLYDGKRIWTWVLGLVPAAARPGVAGAGPRAWRTLTAYVRGTVLVALIDAVFIGL 295

Query: 232 AYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
             +   V   V L V   + A IP  GA IS     +  L+      A  +         
Sbjct: 296 GLYFLDVTMAVPLAVFIFLFAFIPLVGAVISGALAVVVALVTQGPVIALAVLGVVLAVQQ 355

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           I    L+PF++G  +++  L     +  G    G+ G
Sbjct: 356 IEGHVLQPFILGRAVRVHPLAVVLAVAAGGMVAGIGG 392


>gi|83593499|ref|YP_427251.1| hypothetical protein Rru_A2164 [Rhodospirillum rubrum ATCC 11170]
 gi|83576413|gb|ABC22964.1| Protein of unknown function UPF0118 [Rhodospirillum rubrum ATCC
           11170]
          Length = 369

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 110/312 (35%), Gaps = 9/312 (2%)

Query: 5   MLNPQGIMRWMI-MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           M   + I  W+I + +  V ++ L+    P ++ L + +   P+      K   S  +  
Sbjct: 1   MNRDKQIRVWLIGILVFAVLIFLLRSVLLPFVTGLAVAYFLDPLADRLE-KWGTSRLWAV 59

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           +  T+  + + ++ LL L      ++ + V+ +    +  +   R L D    +   +  
Sbjct: 60  IWITLGFVLVMVLALLVLLPLINGQIADFVTNMPEYARALVGKGRALLDNLVDVLGPDRM 119

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
           +   S  ++    +  +L       I       G   ++    ++   +  F+  RD   
Sbjct: 120 SDVTSSLEAAAGEATKWLGGLVNQLISG-----GAALINLVSVLVITPVIAFYMLRDWDV 174

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +   +D      +    +     + + I     G   + +  G        + G+   + 
Sbjct: 175 MVASIDRWLPRPYAPVIRAQMAEIDRTIAGFVRGQASVCLALGSFYAIGLTIGGLDLGLI 234

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF--IVDKTLRPFLV 301
           +G+I+ +++ IP    I+   VS+ L +           + G   +   I    L P LV
Sbjct: 235 VGMISGLLSFIPYVGTITGFIVSMGLALAQFDSWIDTAIIAGIFVVGQMIEGNYLTPKLV 294

Query: 302 GGPIKLPFLPTF 313
           G  I L  +   
Sbjct: 295 GDRIGLHPVWVI 306


>gi|86133981|ref|ZP_01052563.1| protein of unknown function DUF20 [Polaribacter sp. MED152]
 gi|85820844|gb|EAQ41991.1| protein of unknown function DUF20 [Polaribacter sp. MED152]
          Length = 360

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 120/326 (36%), Gaps = 20/326 (6%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           ++ A ++     PI   F+ KK +    LAV+ T+ +M   +  ++ LF   ++E  + +
Sbjct: 37  IIIAAVLSLIGRPI-ILFLRKKLKFPNTLAVVTTMILMLSLLTGIVVLFIPLIIEQGKSL 95

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
           S ++  +Q    V    + I              S    +    ++    N    IP   
Sbjct: 96  S-LLEVDQLQYNVQSIFNQITA---------YFSSKGIDVLKELKSIDFANQFKTIPNIF 145

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
           +       +  + +  ++   FFF +D     + + +L  +     +     ++  ++  
Sbjct: 146 NSILGTLGNLSVGLFSVLFICFFFMKDSRLFKKGILTLIPNNSENKFSHSLEVINNLLSR 205

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK- 272
            F+G+        ++        G+ + V +  + A++ +IP   PI    +   L +  
Sbjct: 206 YFIGLIFQITILFIIYTIVLLFFGISNAVVIAFLCALLNLIPYVGPIIGGLLMFTLSMTS 265

Query: 273 --GNIFNATCL-----FLWGAIELFIVDKTL-RPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             GN F A  L      +       ++D  + +P +     K   L  F  ++ G    G
Sbjct: 266 NIGNDFQAFILPTSLKIMVFYFLAQVLDNFVSQPVIFSKTTKSHPLEIFLVIIIGGLLFG 325

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIK 350
           ++G+         + VI KE +   K
Sbjct: 326 VIGMITAVPSYTALKVILKEFLSENK 351


>gi|304439468|ref|ZP_07399377.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304372064|gb|EFM25661.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 388

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 102/286 (35%), Gaps = 8/286 (2%)

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +S++   I+    +     L + +L++ VV   ++   + +   D       +E + + L
Sbjct: 95  ISIILTLILTFGIITLVIALIVPQLINAVVTIEKNLPAIAQKSIDFLKSYSFTEAYGEKL 154

Query: 128 SHPQSLKILSETFLKTNG-----IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               +    +  F +  G        I +              +  F  I   +   D  
Sbjct: 155 DKFVNNLSWNHLFDRIKGFFDGSNSSIAKSVLGTASGIFGSIANAFFSFIFTIYILADKE 214

Query: 183 SISQQLDSLGEHLF---PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            +S Q   L + +F     Y K +  +             I A   G+V      + G+P
Sbjct: 215 HLSYQAKKLVDAIFLEKAPYVKHVLSMTKNNFYYFVKAQLIKASIMGIVTFIMMMILGLP 274

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               + VI A   ++P   PI    + +  ++  +   A    + G +   +    L P 
Sbjct: 275 YPSMIAVIAATTDLVPLIGPIIGVFLGVLFILIESPTQALIYAILGIVLQQLEGNILDPK 334

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           LVG  + +P + + F +V G    G++G+++   L A +  +  E 
Sbjct: 335 LVGNSLSIPPMWSLFAVVVGGSLYGVVGMWLFVPLFATLYKVVSEW 380


>gi|302387164|ref|YP_003822986.1| sporulation integral membrane protein YtvI [Clostridium
           saccharolyticum WM1]
 gi|302197792|gb|ADL05363.1| sporulation integral membrane protein YtvI [Clostridium
           saccharolyticum WM1]
          Length = 357

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 82/218 (37%), Gaps = 2/218 (0%)

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L+   S  + S   L TN         S +        + ++ M+I+ FF   D   +
Sbjct: 131 AALNDMFSQFVQSIGELVTNLSVQSVSALSGYASSLPGIFIKLLLMVISTFFIAGDYDML 190

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
                        A   ++   V   +        +I     + L     + GVP+ + +
Sbjct: 191 VGFASRQLSDKARALLLQVKNYVVGTLFVCIRSYALIMSITFVELAIGLSIIGVPNAILI 250

Query: 245 GVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            +  +I  ++P  G        ++   I+GN   A  L +   + + ++   L P +VG 
Sbjct: 251 ALAISIFDILPVLGTGGIMIPWTVITAIQGNYPLAIGLLVVY-LIITVIRNILEPKIVGS 309

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            I L  + T   +  G +  G+ GLF  P+L++L+  +
Sbjct: 310 QIGLHPIVTLASMFVGAQLFGVFGLFGFPILLSLLRHL 347


>gi|87301132|ref|ZP_01083973.1| hypothetical protein WH5701_14641 [Synechococcus sp. WH 5701]
 gi|87284100|gb|EAQ76053.1| hypothetical protein WH5701_14641 [Synechococcus sp. WH 5701]
          Length = 347

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 56/326 (17%), Positives = 116/326 (35%), Gaps = 30/326 (9%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
            +      ++A ++           + +         +I  ++ + +  + +  L +  +
Sbjct: 37  FRAVLTVFIAAAVLAVLLDYPVRRLV-RLGCGRGLAILITVLAGLAVASLFVAVLGFQLI 95

Query: 87  LEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            +   L++ +VL  Q   +P   +L+ I        L                       
Sbjct: 96  NQGSSLLNDLVLGLQRPDLPFHNYLNTIELSKVLELLRAS-------------------- 135

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              +       G  F +    +  ++I ++    +G + SQ L  L E +      +  R
Sbjct: 136 ---LGTGLGVIGGAFTNVFGGVFLLVIVVYMLVDNGATWSQALRLLPEDVRG----RFDR 188

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTA 264
            V K +     G   + I   L     + L GV   + L ++  ++  IPG GA +    
Sbjct: 189 SVQKNVLGFLRGQITLMIFLSLASFLVFALLGVKFSLVLAIVVGVLDAIPGIGATLGVIV 248

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            S  + +    + A  + +   +   I D  + P ++G  +++  +  FF L  G R  G
Sbjct: 249 ASGLVFLTQGQWLALQVVIASVVLQQIQDNLIHPRVMGRALEIRPVVLFFALFVGERLAG 308

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIK 350
           LLG+F+   +  +I    KES  A  
Sbjct: 309 LLGVFLAIPVTGMILGWGKESEEADP 334


>gi|289706835|ref|ZP_06503178.1| conserved hypothetical protein [Micrococcus luteus SK58]
 gi|289556520|gb|EFD49868.1| conserved hypothetical protein [Micrococcus luteus SK58]
          Length = 420

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/326 (15%), Positives = 116/326 (35%), Gaps = 24/326 (7%)

Query: 13  RWMIMFIILVSLYFLKGFF-------APVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           R +++ + L  L  +  FF       APV   L +   ++P+ +  I +        A  
Sbjct: 25  RMLVIVLTLAGLVLVVQFFQGIASIAAPVFLGLNLVIVAYPLQAWLIRR-GLHPVLGATT 83

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + V+ +  V    + + G+  + EL        Q  + V  WL++             
Sbjct: 84  TVLLVVAVMAVFAGMMVWSGLELVAELPKYTDRFQQIVLDVSHWLNE------------- 130

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
               P  +     +   +          ++           ++ +I+ +FF   D   + 
Sbjct: 131 RGVTPDMVSQQLASIDMSTVTGTAVSAITKIATNVYAVFGLLVTVIMGMFFLAMDSMDVE 190

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +++  L        +        + +R  ++  T+  +   ++   A  L GVP  +  G
Sbjct: 191 RRVRLLST--ARHEFGHALVEFAQGVRRYWVVTTVFGLIVAVLDVIALMLIGVPLALVWG 248

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           V++ +   +P  G  I     ++  L  G   +   + +  ++  F++   ++P + G  
Sbjct: 249 VLSFLTNYVPNVGFIIGLLPPAVLGLAAGGWSDFLWVVVSYSVLNFVLQSVIQPKVAGDA 308

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFI 330
           I +    +F  L+     +G LG  +
Sbjct: 309 IGVIPTVSFLSLLFWAWVLGPLGAIL 334


>gi|83815462|ref|YP_446239.1| domain of unknown function, putative [Salinibacter ruber DSM 13855]
 gi|294508171|ref|YP_003572229.1| Conserved hypothetical protein containing UPF0118 [Salinibacter
           ruber M8]
 gi|83756856|gb|ABC44969.1| Domain of unknown function, putative [Salinibacter ruber DSM 13855]
 gi|294344499|emb|CBH25277.1| Conserved hypothetical protein containing UPF0118 [Salinibacter
           ruber M8]
          Length = 413

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/339 (12%), Positives = 123/339 (36%), Gaps = 13/339 (3%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           +   +++  G    ++   ++ +   P                      +++  F V L 
Sbjct: 78  VGWMVWYFAGIVLYLIVGGLLAYLLRPPVDYIQGLGVGR--------VPAILVAFAVFLG 129

Query: 80  FLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            +       +  +  +V   +Q   I    +++++        +  +     ++++  +E
Sbjct: 130 VIVVIVTSVVPFITRQVQDLSQLITIDTAAYVANLIEAQVQGVVPLEQGVLEENVRQAAE 189

Query: 139 TFLKTNGI--DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           + ++ + +    +    S    +F +   +++ +    FF  +D   I + L  L  + +
Sbjct: 190 SLMRGDLVEGQQVAETVSSVVSVFTNIVYAVVIVPFVTFFLLKDELRIRRSLLHLVPNRY 249

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
                 I   V   I   F  + +      ++  +  W+ G+   +A+G+ T +   IP 
Sbjct: 250 FEVTLSILAKVELNIGRYFRALLVQGTAIAVIASTLLWIVGLRGAIAIGIFTGLANTIPY 309

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT-LRPFLVGGPIKLPFLPTFF 314
            G  + F A ++  + +    +             + D   L+P +     +   L   F
Sbjct: 310 FGPFLGFLAGTLVGIAQTGDVSLVPGVALAMALTQLADNVLLQPLIFSRAAQTHPLVILF 369

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            ++ G +  G+LG+ +   L   + VI ++ + +++  +
Sbjct: 370 VVLAGAQLGGILGMLMAIPLTTTLRVIVEQLLWSLRNYR 408


>gi|167754764|ref|ZP_02426891.1| hypothetical protein CLORAM_00268 [Clostridium ramosum DSM 1402]
 gi|167705596|gb|EDS20175.1| hypothetical protein CLORAM_00268 [Clostridium ramosum DSM 1402]
          Length = 365

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/330 (15%), Positives = 108/330 (32%), Gaps = 17/330 (5%)

Query: 33  PVLSALIIGFTSWPIYSSFISKK---------EESSTFLAVIATVSVMCLFIVPLLFLFY 83
           P++   ++ +   P+                 +       ++ +++V+ + I+ L +L  
Sbjct: 40  PIIIGGVLAYFLEPLVQMVTKLFENCQSSFLKKHRRVLSVLLVSLAVILMIILLLTWLIP 99

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             M    E    +         V  + + I        L    +   Q+     ++    
Sbjct: 100 MVMDYAVEFAKNIDT------YVKSFEASINSSFEDPNLAGTIIQVEQTFVDSIKSLSAN 153

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           + ++ I  FA + G   L   + +IF    L    +      + +               
Sbjct: 154 DFMEVIA-FAGKTGSTLLTILMGLIFCPYILIEAEKLARIFDRFMLCFISQENLDLIHGY 212

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISF 262
           +    ++  +   G  I ++  GL+    + L G+P    L  +  I  MIP  G  I  
Sbjct: 213 AIKSHRIFGNFIYGKFIDSVIIGLIALVGFGLMGLPFFPLLAFVVFITNMIPYFGPFIGG 272

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             V   +L+   I  A    L+           L P ++G  + +        +      
Sbjct: 273 VPVVFIVLLTNGIMPAIWTALFIFALQQFDGLILGPRILGDSVGISPFWIICSITIFGSL 332

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            G LG+F+G  L+ +I + + + +   K  
Sbjct: 333 FGFLGMFLGVPLICVIRMFFNDFLEYRKNR 362


>gi|291454538|ref|ZP_06593928.1| conserved hypothetical protein [Streptomyces albus J1074]
 gi|291357487|gb|EFE84389.1| conserved hypothetical protein [Streptomyces albus J1074]
          Length = 406

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/356 (14%), Positives = 111/356 (31%), Gaps = 22/356 (6%)

Query: 8   PQGIMRWMIMFIILVSLYFL--KGF------FAPVLSALIIGFTSWPIYSSFISKKEESS 59
           P+ + R M+M + LV+ + L    F         +L A  +     P  S   ++     
Sbjct: 2   PRWLPRAMVMALALVAAFQLGTWAFHQLTSLLINILIAFFLALAVEPAVSWMAAR-GMRR 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
                   + ++      +  L      ++ ++V       ++   V  W++       +
Sbjct: 61  GLATAAVFLGLLVASAGFVTLLGSMLAGQIVDMVEDFP---KYLDSVISWINQTFHTDLS 117

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                  L H   L+   +                      L     ++ +++  F+F  
Sbjct: 118 RLEVQDSLVHSDWLRRYVQNS---------ATGVLDISAQLLGGLFQLLTLVLFAFYFAA 168

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  + + L S+      A   +   I             ++A+  G          GVP
Sbjct: 169 DGPRLRRALCSVLPPARQAEVLRAWEIAVDKTGGYLYSRGLMALISGAAHYVLLQWLGVP 228

Query: 240 SHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              AL V   +++  IP        A+ + +    + + A  +  +  +     +  L+P
Sbjct: 229 YAPALAVWVGLVSQFIPTIGTYLAGALPMLIAFTVDPWYALWVLGFVVVYQQFENYMLQP 288

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            L    + +     F  ++ G   +G +G  I    +A +       +     + E
Sbjct: 289 KLTAKTVDIHPAVAFGSVIAGTALLGAVGALIAIPAVATLQAFLGAYVRRYDVHDE 344


>gi|163752410|ref|ZP_02159603.1| permease PerM, putative [Shewanella benthica KT99]
 gi|161327707|gb|EDP98896.1| permease PerM, putative [Shewanella benthica KT99]
          Length = 360

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/304 (15%), Positives = 108/304 (35%), Gaps = 14/304 (4%)

Query: 45  WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
           WP+    +S+   +    A +  V  + + ++ +  L      +   LV+ +      G+
Sbjct: 54  WPVAQ--MSRLGINRITAASLVLVVFVGIMLLLIFGLVPSIWKQGLALVTDLPTMLDKGL 111

Query: 105 PVPR-WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY 163
            + + +++  P  +   +L         ++    +  L T  +  I +    +    L  
Sbjct: 112 IIAQGYVNQYPQFVNPDQL--------DTMVHELKKMLDTQHLLDIGKQILGYSASLLVL 163

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
            +  I + + +FFF +D   + +               K+   + + I +   G  I  +
Sbjct: 164 MVYAILVPLLVFFFLKDKDELLRGCKRFIPT-NRDLAHKVWIEMNQQIFNYIRGKVIEIV 222

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLF 282
             G+V    + +  +     LGV+T    +IP  GA +    +++    +  I       
Sbjct: 223 IIGVVSYIFFAVMDLRYAALLGVLTGFSVLIPYVGATLVTLPIALVAFFQWGISPEFGYL 282

Query: 283 LWGAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           + G   +  +D   L P L    + L  +     ++      G+ G+F    L +L+  +
Sbjct: 283 MLGYGIIQALDGNVLVPILFSDAVDLHPVFIIAAVLVFGGLWGVWGVFFAIPLASLVKAV 342

Query: 342 WKES 345
               
Sbjct: 343 LNAW 346


>gi|300309967|ref|YP_003774059.1| permease [Herbaspirillum seropedicae SmR1]
 gi|300072752|gb|ADJ62151.1| permease transmembrane transport protein [Herbaspirillum
           seropedicae SmR1]
          Length = 360

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 56/319 (17%), Positives = 122/319 (38%), Gaps = 11/319 (3%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
              +P ++A IIG+   P      S++         +A   ++ L    +L      ++ 
Sbjct: 31  PMLSPFVAAGIIGYALNPGVDWIASRRLGPVRVPRFVAVTIMVLLL---ILAGLALVLIV 87

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           +  ++ ++ L      P+   L+         +L          +K L    + T+  + 
Sbjct: 88  VPLVLRQIPLLQAQVPPLLDKLNAF-VSPRLHQLGIDVRLDLAGIKSLLTQQISTSSDEV 146

Query: 149 ---IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              +   A   G   L +  +++F+ + LF+  +D     +++  L    +      ++ 
Sbjct: 147 WTSVLASAKVGGTALLTWLANLLFVPMVLFYLLQDWHQFIKRMQILIPRRWAGRINTMAA 206

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP---GGAPISF 262
            V  ++     G  ++ +   +    A   AG  S + +GV+T ++  IP    G  +  
Sbjct: 207 EVDGLLGQYLRGQLLVMLVLAVYYSVALTAAGFDSALPVGVLTGLLVFIPYVGFGLGLVL 266

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             ++  L   G I       ++G  ++ +    L P LVG  I L  L   F L+   + 
Sbjct: 267 AILAAILQFDGAIGLLWVALIYGVGQV-LESFILTPKLVGERIGLHPLVVIFALLAFGQL 325

Query: 323 MGLLGLFIGPVLMALIAVI 341
            G +G+ +     A+++VI
Sbjct: 326 FGFVGVLLALPASAIVSVI 344


>gi|283769099|ref|ZP_06342004.1| membrane family protein [Bulleidia extructa W1219]
 gi|283104285|gb|EFC05663.1| membrane family protein [Bulleidia extructa W1219]
          Length = 365

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/353 (12%), Positives = 121/353 (34%), Gaps = 20/353 (5%)

Query: 8   PQGIMRWMIMFIILV----SLYFLKGFFAPV---LSALIIGFTSWPIYSSFISKKEESST 60
            Q I    I+ +I++      +F++ F +     L   I+ +     Y     KK +   
Sbjct: 9   NQSIFLVFILVMIVLKIDWIFWFIQHFLSAFHSLLLGAILAYLVNITYVFLEKKKVQK-- 66

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
                  V+++  + + +L L     + + E+ + +    ++     + L +       +
Sbjct: 67  ------IVALVLAYFLIVLVLVTLLFVIIPEVSNSIGSLVKNLPATIQSLGENDHLKKYA 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDF-IPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            +  + +        +           F +          F+    + +  +I   +   
Sbjct: 121 PMVVEQIQKVNWQSYVESMVHFVRTNVFNLASGTLNVVNSFVGLLSNGLIAVIFSIYLLA 180

Query: 180 DGFSISQQLDSLGEHLFPAYW----KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           +   + +++  +  H     W    K    ++ +   +  +G  + A     +     ++
Sbjct: 181 NKSYLKKEISKIVHHFLKPTWVLKMKYAYGLLHQNFHNFIVGQLLEAFILSGLCMIGMFI 240

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
              P  +++G++   + +IP         +  +++       +    L+  I   I    
Sbjct: 241 FRFPYALSVGILVGFINIIPIIGAYIGGVIGAFMVFTVQPILSVFFILYLVILQQIESNL 300

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           + P +VG  I LP +  F  +V      G+ G+ +G  L+A    + +E +  
Sbjct: 301 IYPKVVGAKIGLPAIWVFVTVVIMGSLFGIGGMLVGIPLVATCHQVLQEELKK 353


>gi|254883331|ref|ZP_05256041.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319643361|ref|ZP_07997987.1| permease [Bacteroides sp. 3_1_40A]
 gi|254836124|gb|EET16433.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317384990|gb|EFV65943.1| permease [Bacteroides sp. 3_1_40A]
          Length = 378

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 59/365 (16%), Positives = 130/365 (35%), Gaps = 19/365 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFL----KGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M +  +     +R ++  ++++ + +L     G   P   A +I + ++P+   F +K  
Sbjct: 1   MIQKKITFDSFIRGILTAMVIIGILYLVNRLSGVLLPFFIAWLIAYLTYPMVIFFQNKLR 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
             +  ++++  + V+      +   F   +  + E   K+              + IPG 
Sbjct: 61  LRNRVISILVVLLVLLSI---ITLAFVGLVPPIIEEFGKLKELLTAYFIEGSKQAAIPG- 116

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGM---IFLDYCLSIIFMIIA 173
              +    +H+   +  + L+E+       + +P+  +       I      S I ++  
Sbjct: 117 -TVANFIKEHIDMLKIHEALNESNFANTMRNVLPQVWALLTQSVNIVFSVFTSFIILLYT 175

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
            FF   D  +I++    L           I   V   +   F G   +A   G++    +
Sbjct: 176 -FFILLDYEAIARGWIKLIPARHREMTVHIVTDVQDGMNKYFRGQAFVAFCVGILFSIGF 234

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI----KGNIFNATCL--FLWGAI 287
            +   P  +  G+   ++ M+P    I+F    +  L+     G  F       FL   I
Sbjct: 235 LIIDFPLAIGFGLFIGLLNMVPYLQLIAFIPTVLLALLKAADTGENFWWILFCAFLVFCI 294

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              I D  + P ++G    L        L      MG++G+ I     +L+   ++  I 
Sbjct: 295 VQIIQDGLIVPKVMGKITGLNPAIILLSLSVWGALMGIVGMIIALPCTSLMLSYYQRYIR 354

Query: 348 AIKEN 352
             ++ 
Sbjct: 355 IKEKE 359


>gi|187929927|ref|YP_001900414.1| hypothetical protein Rpic_2859 [Ralstonia pickettii 12J]
 gi|187726817|gb|ACD27982.1| protein of unknown function UPF0118 [Ralstonia pickettii 12J]
          Length = 356

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 55/346 (15%), Positives = 119/346 (34%), Gaps = 14/346 (4%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           +    + +    +  + L  L  L     P + A I+ +   P        +        
Sbjct: 7   SQETKRTLAWIAVALVFLALLKALAPTLTPFVFAFILSYILHPGVEWLQRHRVPR----- 61

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
               V  + L I+ L  +    ML +  ++ + + A    +P      +       +E+ 
Sbjct: 62  ----VLGVFLMILVLSVVGVALMLLILAVLQREIPAIHEQLPGMLAKLNAFLSPRLAEMG 117

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRD 180
                    L+ L    L  +  D + R  +     G   +        + I +F+   D
Sbjct: 118 LHVSFDFPGLRALLTEQLAASPDDVVARVLTYLRVSGSAAIQVLGIFFLVPIVMFYLLMD 177

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              + ++L++     +    ++++     ++     G  I+ +   +   +   LAG   
Sbjct: 178 WNMLMRRLETAVPRRWLRKTRELAAETDGLLSQYLRGQIIVMLVLAVYYSAGLALAGFDV 237

Query: 241 HVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + +G+ T +   IP          A+   LL  GN++    + +   I  F+    L P
Sbjct: 238 ALPVGIFTGLAVFIPYIGFGVGLTLAILAALLQFGNLYGLLAVAVVYGIGQFLEGFYLTP 297

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            LVG  I L  L     L+   +  G  G+ +   + A++ V  ++
Sbjct: 298 RLVGERIGLHPLAVILALLAFGQLFGFFGILLALPMSAVLLVGLRQ 343


>gi|329961809|ref|ZP_08299823.1| hypothetical protein HMPREF9446_01394 [Bacteroides fluxus YIT
           12057]
 gi|328531249|gb|EGF58093.1| hypothetical protein HMPREF9446_01394 [Bacteroides fluxus YIT
           12057]
          Length = 374

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 58/342 (16%), Positives = 116/342 (33%), Gaps = 15/342 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY-G 85
           L G   P   A +I + ++P+ + F  K    +  +++   +  +        +L     
Sbjct: 31  LSGVLLPFFIAWLIAYLTYPLVTFFQYKLRLKNRVISIFCALITLLAIGGAAFYLLVPPM 90

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + E   +   ++    +G                SE   +++      ++  E  L    
Sbjct: 91  IQEFGRVKDLLIEYFSNGAHDSN------VPKTLSEFLRENIDMQFLNQLFKEESLLDAL 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALF--FFYRDGFSISQQLDSLGEHLFPAYWKKI 203
            + +PR  S              F +I L+  F   D  SI++    L    +  +   +
Sbjct: 145 KETVPRLWSLLSESVNLLFSFFTFFLILLYIVFILLDYESIAEGWAHLVPQKYRPFAVNL 204

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
              V   +   F G   +A+  G++    + +   P  + LG+    + M+P    I F 
Sbjct: 205 FNDVKDGMNRYFRGQAFVALCVGILFSIGFLIIDFPLAIGLGLFIGALNMVPYLQVIGFV 264

Query: 264 AVSIYLLI----KGNIFNATCL--FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
              I  ++     G  F           A+   I D  + P ++G    L        L 
Sbjct: 265 PTIILAILKAADTGGNFWIIIASATAVFAVVQAIQDGLIVPRVMGRITGLNPAIILLSLS 324

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                MG+LG+ I   L  L+   ++  I+  +   +  SS+
Sbjct: 325 IWGSLMGMLGMIIALPLTTLMLSYYQRFIINRENIHKTESSD 366


>gi|15895070|ref|NP_348419.1| permease [Clostridium acetobutylicum ATCC 824]
 gi|15024766|gb|AAK79759.1|AE007688_8 Predicted permease [Clostridium acetobutylicum ATCC 824]
 gi|325509208|gb|ADZ20844.1| permease [Clostridium acetobutylicum EA 2018]
          Length = 318

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 52/326 (15%), Positives = 119/326 (36%), Gaps = 24/326 (7%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + I   +++   +V   F+K +F P LS +I+     PIY+     K       AV++ 
Sbjct: 5   KKLIECIILLLFFVVFTLFIKYYFKPFLSIVILTILCSPIYNLLSKHKVFGDRINAVLSI 64

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + +  +  + +  +  +   ++   +                ++ +P    ++     + 
Sbjct: 65  IVINVMIFLAIFLIGNFIAQKLNIYLQHYHNVLD--------INKLPIIGESNVNILLNK 116

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            +    K+ +  F K + +               D  L+    I++++F   D + I   
Sbjct: 117 INVFVDKLFNADFFKKSAV------------YTTDGILTYFVSIMSVYFILVDKYDIV-- 162

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
             +L E LF      I       I+S     T + +   +     +++ G+     LG+I
Sbjct: 163 --NLAEKLFTKNKVHILMKKFSDIKSLLRVETFLVLITTIQTIIGFFVLGIEDCFMLGII 220

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             I+ ++P    I      I   +    +      +   I L +  + +    +   +K+
Sbjct: 221 CGILDILPYVGTIIIFIPLIIYKMYEKNYVTIFGLIALYIFLQVSRQIMETNFMSSKLKI 280

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPV 333
             L     +  G++  G++GLFI P+
Sbjct: 281 HPLIILISVYIGIKAFGIIGLFIAPI 306


>gi|257065304|ref|YP_003144976.1| predicted permease [Slackia heliotrinireducens DSM 20476]
 gi|256792957|gb|ACV23627.1| predicted permease [Slackia heliotrinireducens DSM 20476]
          Length = 400

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 102/285 (35%), Gaps = 5/285 (1%)

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           A ++++ +    ++ +    +  +  LV     A  + +     ++ IP  +        
Sbjct: 91  AIITIVGIVGAIMVLVVPQFVGAINTLVQSAPAAVNNLLSNESLVALIPASVVDY----M 146

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                 ++       L++    ++   ++ F  + + + + IIF +  L    R    I 
Sbjct: 147 KELDWNTVLADVTAALQSGIAGWLAGLSNTFTTMLI-WVMGIIFAMYFLASRDRVVPQIK 205

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +   +     + A   + + ++        +G    A+  G++      L  +P    + 
Sbjct: 206 RVAKAYMRPEWYAQGARFAELLDDSFHKYVVGQCTEAVILGVLCFIGMTLLRLPYASMIA 265

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            +  + A+IP        AV  ++++  +   +    ++  +   I    + P +VG  +
Sbjct: 266 ALIGLTALIPIVGAYLGAAVGAFMILTFSWQQSLEFLVFIIVLQQIEGNFIYPKVVGTSV 325

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            L  +     +  G    G+ G+ +   L+A    + KE +   +
Sbjct: 326 GLSGVLVLAAVTIGGAVSGIFGMLVAVPLVAAGYRVLKEDVAKRE 370


>gi|223938116|ref|ZP_03630013.1| protein of unknown function UPF0118 [bacterium Ellin514]
 gi|223893160|gb|EEF59624.1| protein of unknown function UPF0118 [bacterium Ellin514]
          Length = 436

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 53/391 (13%), Positives = 133/391 (34%), Gaps = 56/391 (14%)

Query: 15  MIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +++ ++    +    L G   PV  AL++ +   P+   F+ ++     F  ++  +  +
Sbjct: 29  LLVMLVWSVGWIVNALSGVLLPVAVALVLAYILDPVVEFFVRRRIPR-LFSILLVFLLGV 87

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +    L  +    + E ++LV                    P G   + +W    S   
Sbjct: 88  VIVTALLGSVVPGLVRETRKLVKDFPDTTHKLQSRFDHFLQTPLGHRLAMVWQHEASQGI 147

Query: 132 S--------------------------------------------LKILSETFLKTNGID 147
           +                                            +  +    L   G+ 
Sbjct: 148 AHAGKPGTESSSSATNMVAVTGTNNVESPTNNAALGKPKTIANSPVDEVIIPALTKAGMW 207

Query: 148 FIPRFASRFGMIF--LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            +    ++   +   +++ +  + + + LF+F  +   I+++             ++I  
Sbjct: 208 TLEWITNQLSKVTTWVEFLIGFVLVPVYLFYFLLEKKGITRRWTDYLPIHESKAKQEIVF 267

Query: 206 IVPKV---IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           I+      +   F G  ++A+  G ++  AY + G+   V LG + A++ ++P    I+ 
Sbjct: 268 ILSSFNDCMIVFFRGQVLVALCVGGLMTIAYLIMGLNYAVLLGAVIAVLGIVPYLGTITG 327

Query: 263 TAVSIYLLIK--GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            A+++ +     G+  +   +    A    + D  + P ++G    L  L     ++ G 
Sbjct: 328 LALALIVAAVQYGDWGHPLAVIAIVASVKLLEDFVIIPKIIGDRAGLHPLTIMVAVMVGT 387

Query: 321 RTM-GLLGLFIGPVLMALIAVIWKESIMAIK 350
             + G +G  +   L AL+  +    I   +
Sbjct: 388 TLLGGFIGAVLAIPLTALLRTLMFRYIWKRR 418


>gi|319780338|ref|YP_004139814.1| hypothetical protein Mesci_0592 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166226|gb|ADV09764.1| protein of unknown function UPF0118 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 389

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 65/336 (19%), Positives = 123/336 (36%), Gaps = 14/336 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  + +F+ + +LYF + FF PVL A ++  T  PI    + K        A +  +
Sbjct: 30  RSLLIGIFLFMAIYALYFARAFFMPVLLAFLLALTLTPI-VRLLRKHGIPEVISATLLVL 88

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +C+F          G L    ++  +   +  G  +   L+ +       E   +   
Sbjct: 89  LSLCVF-------ATAGYLLSGPIIDLINNTSSIGQKLTERLAQL---RQPLEKIMQISH 138

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             + L   S+               S      L     +  + +   F    G    +++
Sbjct: 139 QIEQLTETSQESGIQKVAVAQSGILSAAASNILSAGTGLTIIFVLSLFLLASGTMFYEKI 198

Query: 189 DSLGEHLFPA-YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                 L       ++   V + I    L +TII  G G V+    W  GVP+ +  GV 
Sbjct: 199 IQSFASLSEKKRALRVVYDVEREISHYLLTVTIINAGLGTVIALGLWALGVPNPLVWGVA 258

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK-TLRPFLVGGPI 305
            A++  +P  GA I+   V++  LI  +      L     I   IV+   + P +VG  +
Sbjct: 259 AALLNFLPYVGALITIVLVTVMALISFDTIFYALLAPAFVILCDIVEGQFVTPMVVGRRL 318

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++  +  F  +       G +G  +   L+ +I V 
Sbjct: 319 EINAVAIFIAIAFWSWLWGFVGALMAVPLLVVIKVF 354


>gi|322374430|ref|ZP_08048944.1| membrane protein [Streptococcus sp. C300]
 gi|321279930|gb|EFX56969.1| membrane protein [Streptococcus sp. C300]
          Length = 369

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/338 (14%), Positives = 114/338 (33%), Gaps = 8/338 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            II   +  +     P L      + + PI +    + + +     ++   +++   +V 
Sbjct: 29  AIITPFVTVVNTIMIPFLLGGFFYYITNPIVTFLEKRCKINRLIGVLVTLCALIGAIVVG 88

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +++L    + ++  L   ++ +      +   + D+        +  +      +L  + 
Sbjct: 89  VVYLLPILINQLTSL---IISSQNIYSRLQDLIIDLSMNPVFQNIDIQQTIQQLNLSYVD 145

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              +  N ++ +               L +I   + L +F  DG  +   L+        
Sbjct: 146 ---ILQNILNSVSNSLGSVLSALFSTVLILIMTPVFLIYFLLDGHKLLPMLERTVLKHDK 202

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-G 256
                +   +   I     G+ I AI  G +    Y + G+   +   + + I  +IP  
Sbjct: 203 LNLSSLLTNLNTTIARYISGIAIDAIIIGCLAYIGYSVIGLKYALVFAIFSGIANLIPYV 262

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           G  I    + I  +   +         +  I   I    L P +VGG +K+  +     L
Sbjct: 263 GPSIGLIPMVIANVFT-DPHRMLIAVAYMLIIQQIDGNVLYPRIVGGVMKVHPITILVLL 321

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           +      G++G+ +     ++   I K      + +KE
Sbjct: 322 LLSSNIYGVIGMVVAVPTYSIFKEITKFLAKLYENHKE 359


>gi|317497713|ref|ZP_07956028.1| hypothetical protein HMPREF0996_01009 [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895047|gb|EFV17214.1| hypothetical protein HMPREF0996_01009 [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 391

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 110/327 (33%), Gaps = 6/327 (1%)

Query: 26  FLKGFFAPVLSALII--GFTSW--PIYSSFISKKEES--STFLAVIATVSVMCLFIVPLL 79
            L  FF   L A I+      +   +    + KK  S       +I+ + ++   IV L 
Sbjct: 50  ILFPFFMGFLIAYILNPVVAFFQRNVSIKLLKKKSASTQRGLAILISYLVMVGFIIVCLR 109

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
           F+       ++EL   +    +  + +     +    M+  ++     +           
Sbjct: 110 FIIPQLYDSIRELSLMIPDIYKSIMSIFEHYRENSTDMFPGQIADMIETKTLPKLFELTN 169

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            L TN +  +   +  F     +  ++ I  I      +    +  + + ++    F   
Sbjct: 170 NLLTNIVPMLYEASMSFAKGLFNLFIAFIVSIYMTIDKFILKNAGKRLVLAIFNENFSYR 229

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             +  +    +     +G +I ++  GL+   A  +  +P  V + VI  +  MIP   P
Sbjct: 230 VLRTLKDCHNIFSGFIIGKSIDSLIIGLLAFVAMTILKLPYTVLISVIIGVTNMIPYFGP 289

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           I       ++L   +        +   +        L P ++G    +  L   F +  G
Sbjct: 290 IIGAVPGAFILFIVSPTKCLIFIIMVFVLQQFDGLILGPKILGESTGVRPLLILFSITVG 349

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESI 346
               G LG+F+G    A +  +    +
Sbjct: 350 GAYFGPLGMFLGVPFFATVQFLIGNWV 376


>gi|313623797|gb|EFR93928.1| membrane protein YdbI [Listeria innocua FSL J1-023]
          Length = 345

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 121/358 (33%), Gaps = 26/358 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  + + R  +  +I   LY L+     +L   I  +    + +  + +       + ++
Sbjct: 8   LQNRSVRRVGVFLLIAFVLYLLRSQMNIILLTFIFSYLITRLENFILRRISIYRQIIVLL 67

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V +  + +   +        ++ +LV       +                  +E    
Sbjct: 68  LYVLIAGVIVFVFVKYIPVLADQINQLVKFGNSFLKT--------------DSNNEFINY 113

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            +S      I+        G+  I  + +  G + ++    +   ++   FF      + 
Sbjct: 114 IVSLANQFDIMK---YTEQGVSMILTYLTNVGTVLMN----VFIALMLSLFFSLGKDHLI 166

Query: 186 QQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              +          +++                    IIA+   ++   A W+ G P  +
Sbjct: 167 SFTNQFSTSKIGFIYEEVKFFGSKFVATFGKVIEAQFIIALVNAVLTTIALWILGFPQLM 226

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L ++  ++ +IP  G  IS   ++I     G +     + +   I   +    L P L+
Sbjct: 227 TLSIMVFLLGLIPVAGVIISLIPLTIIGYSIGGVEYIFYILVVVIIIHALESYVLNPKLM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKEKISS 358
                LP   TF  L+ G    G+ GL +G PV+M  + V+   +   + + K+ IS 
Sbjct: 287 SAKTNLPVFYTFIILIFGEHFFGIWGLIVGIPVVMFFLDVLGVTNQEEVNQPKDTISH 344


>gi|296133409|ref|YP_003640656.1| protein of unknown function UPF0118 [Thermincola sp. JR]
 gi|296031987|gb|ADG82755.1| protein of unknown function UPF0118 [Thermincola potens JR]
          Length = 359

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/314 (13%), Positives = 112/314 (35%), Gaps = 13/314 (4%)

Query: 5   MLNPQGIMRWMIMFIILVS----LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
            L  + I R + +  + V     LY ++    P   A++I +   P  +   S++     
Sbjct: 18  QLTRKKIYRLIFLITVPVLTGYLLYRVRRIMIPFALAVLIAYLLNPFVNMLESRRLPRG- 76

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
                  ++++ ++ +  +F+     + +  ++ ++    +      R +  I      +
Sbjct: 77  -------IAILLVYALVFVFITGLVTVGVPAIMDELTSFARAVPHFTREVQSI-VHEAEA 128

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                 L  P       +  L    +  +    +   +    +  S+I   +  F+  +D
Sbjct: 129 RYSRFVLPDPVKKVFDQKIKLVEAQLISLTGELAEGVVGIFSHLFSLIIAPVFAFYLLKD 188

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
             +I +   +L    +    + ++  + ++      G  ++ +  GL+ G  Y L G+  
Sbjct: 189 SGNIKKNFLALLPAGWRNDVQALTVDINEIFSKYIRGHLLVCVIVGLLTGVGYALVGLEY 248

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              LG+   I  ++P   P      ++ L +  +   A  + +   +   I +  + P +
Sbjct: 249 AFILGIFAGIADLVPYFGPFIGALPALMLALLESRVMALKVLIVVLVIQQIENSVISPKI 308

Query: 301 VGGPIKLPFLPTFF 314
           +G  + L  L    
Sbjct: 309 IGDSLGLSPLVVII 322


>gi|257125219|ref|YP_003163333.1| hypothetical protein Lebu_0429 [Leptotrichia buccalis C-1013-b]
 gi|257049158|gb|ACV38342.1| protein of unknown function UPF0118 [Leptotrichia buccalis
           C-1013-b]
          Length = 371

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 97/285 (34%), Gaps = 16/285 (5%)

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
           + TF  ++       +F+  +L +      ++  L+  ++                    
Sbjct: 91  NRTFAILLVLSVFFIIFLYIILTIVPIITKQVSSLIDFLLKNQDKLQ------------N 138

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                   +    +S  + S+  + +N I  +    S     F    ++ IF I+ +F +
Sbjct: 139 NFFGFLESNNIDLRSSLMSSKDIIISNAIKVLGSSFSLISSTFSLLFMTPIFTIMLIFSY 198

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
                +I   +     ++       + + + + I    L   + ++  G++    ++   
Sbjct: 199 ----DNIENGVKRFFRNIGREDLIILIKNMDETIGKYILVTALDSMIVGIISFIIFYFLK 254

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           +   +   VI     +IP   P      +I      +      + +   I   I    ++
Sbjct: 255 MDYSMLFSVIVGFGNVIPFIGPFIGLIPAILYAFTKSFKLVILIVVLITIVQTIEANIVK 314

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           P+L G  +++  + T   ++ G    G+ G FI   +  +I + W
Sbjct: 315 PWLTGKSVEMHPITTLLVVLIGGALFGISGAFIAIPVYIIIKLTW 359


>gi|298491879|ref|YP_003722056.1| hypothetical protein Aazo_3225 ['Nostoc azollae' 0708]
 gi|298233797|gb|ADI64933.1| protein of unknown function UPF0118 ['Nostoc azollae' 0708]
          Length = 390

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 117/312 (37%), Gaps = 15/312 (4%)

Query: 31  FAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
            A ++ A ++ F   +P+  S++ ++      +A++  +  + + +   + LF   + + 
Sbjct: 47  IAILVGASVLAFLLNYPV--SWMERRGARREQVAILVFLLALSILLALGVTLFPLALTQA 104

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           ++LV+++      G      L++    M         +                  +  I
Sbjct: 105 QQLVARLPELIDSGRSQLMILNEKAESMGLPINLDAIVVQINDRVKGQ--------LQAI 156

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                   ++ +   L  +  ++  F+  + G  + + L       F   + +  R+   
Sbjct: 157 AGQVLNLAVVTVTSLLDFLLTMVLTFYLLQHGGELWESLVEWLPTRFREPFSRTVRL--- 213

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
             ++ F+   I++I     L  ++    VP  +  G+   IMA+IP G      A +  L
Sbjct: 214 SFQNFFISQLILSICMASALIPSFLWLKVPYGLLFGLTIGIMALIPFGGS-VGIAATTLL 272

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           +   +++    +     I   I++  + P ++G    L  +     ++ G R  GLLG+ 
Sbjct: 273 VSLQDVWMGARVLAAAVIVQQILENLIAPRILGSFTGLNPVWVLISVLTGARIGGLLGVI 332

Query: 330 IGPVLMALIAVI 341
           +      +I  I
Sbjct: 333 VAVPCAVVIKTI 344


>gi|56696016|ref|YP_166370.1| membrane protein [Ruegeria pomeroyi DSS-3]
 gi|56677753|gb|AAV94419.1| membrane protein [Ruegeria pomeroyi DSS-3]
          Length = 355

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/330 (16%), Positives = 121/330 (36%), Gaps = 14/330 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +   + +  LY L     P +    I +   P+          S      + T++ + LF
Sbjct: 14  LAAAVFVAVLYLLGDVLLPFVIGGAIAYFVDPVADRLERW-GLSRAAATAVITIASVLLF 72

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           ++ +L +    + +M +L++ +    Q                    +  +  +  Q + 
Sbjct: 73  VLMVLMVVPALITQMIDLINVLPQLFQDL--------RTFVSTHFPSVLDRESNAHQMIA 124

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
            + ET LK+   D +   A   G    +  L ++ + +   +   D   +  ++D L   
Sbjct: 125 SVIET-LKSRSGDLLQTLAGSVGSAI-NVVLLLVIVPVVSVYLLLDWDRMIARIDQLLPL 182

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 ++++  +  V+ S   GM  + +  G     A  + G+   + +G+I  ++  I
Sbjct: 183 DHAPVIRRLAGEIDAVLASFVRGMGTVCLILGTYYAVALMIVGLQFGLVVGLIAGLVTFI 242

Query: 255 PGGAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           P    +   A++I L +    G+  +   +    A+   +    L P LVG  + L  + 
Sbjct: 243 PYLGALIGGALAIGLALFQFWGDWLSIGLVAAIFALGQVVEGNLLTPKLVGSSVGLHPVW 302

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
               L       G +G+ I   + A + V+
Sbjct: 303 LLLALSVFGALFGFVGMLIAVPVAAALGVL 332


>gi|86138528|ref|ZP_01057101.1| membrane protein [Roseobacter sp. MED193]
 gi|85824588|gb|EAQ44790.1| membrane protein [Roseobacter sp. MED193]
          Length = 376

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/354 (16%), Positives = 126/354 (35%), Gaps = 15/354 (4%)

Query: 4   TMLNPQGIMRWMIMFIIL-VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
            +   +    W I  ++  V ++ L     P +    I +   PI     +    S +  
Sbjct: 18  ALPAKKQFKYWGIAALVFSVVMWALGDVLLPFVLGAAIAYLIDPIADRLET-MGLSRSTS 76

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +  V +M  F++ LL L    + +M +L   +  A Q      +  +  P        
Sbjct: 77  TAVIVVLLMLFFLLALLVLLPTLINQMIDLTEILPKAFQDLRTFAQ--THFPSVFTEGSR 134

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             + ++            L+  GI+ I   A    +  L+  +  + + +   +   D  
Sbjct: 135 AQQTIASIVGT-------LQGKGIELIEGIAGS-AISLLNVLVLFVIVPVVAVYLLLDWD 186

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +  ++D L         +++   +  V+ S   GM  + +  G        + G+   +
Sbjct: 187 RMIARVDELLPRDHAPVIRRLMAQIDAVLASFIRGMGTVCLILGSYYAITLMIVGLNFGL 246

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPF 299
           A+G I  ++  IP    +   A++I L +    G+ ++   +    A    I    L P 
Sbjct: 247 AVGFIAGLVTFIPYLGALIGGALAIGLALFQFWGDWWSIGIVGAIFAFGQVIEGNYLTPK 306

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           LVG  + L  +     L       G +G+ +   L A + V+ +  +    +++
Sbjct: 307 LVGNSVGLHPVWLLLALSVFGALFGFVGMLVAVPLAAALGVVARFLVEQYLDSR 360


>gi|325181211|emb|CCA15625.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 776

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 76/202 (37%), Gaps = 10/202 (4%)

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK---KISRIVPKVIRSTFL 216
           F+   +   F I +LF+      +    ++   E L P   +   ++   + KVI   F 
Sbjct: 344 FVSLGIRAFFFISSLFYLLC---TKWDPIERFVEDLLPIQNEKRPQVVHSIRKVIEGVFF 400

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNI 275
               ++    LV   ++ +           +T  ++++P   P +     ++ + +  + 
Sbjct: 401 VPLKMSSLHALVTLISFSIVRADFVYLATTLTFFISIVPIIPPYLVCVPWALAIGVTSSF 460

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             A  LF    I   I+D  L        + L    +   +V GV   G  G+  GP+ +
Sbjct: 461 IKALILFCVQYIAFTILDDMLY---EKSIVALNSYVSALSVVFGVYVFGFEGVIFGPLSV 517

Query: 336 ALIAVIWKESIMAIKENKEKIS 357
             +   ++ S   I+  ++ ++
Sbjct: 518 CGVYFAYEVSNHGIQAAQDDVT 539


>gi|296167423|ref|ZP_06849824.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295897232|gb|EFG76837.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 382

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 98/289 (33%), Gaps = 13/289 (4%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
           ++ ++         +  ++   L    L F+    +  +  L  +V  + +    + RWL
Sbjct: 64  WLDRRGLPRGGAVALVLLTSFSLLGGILAFVVNQFIDGLPGLTEQVTRSIES---IRRWL 120

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
            D P  +   ++     +  ++L+              +   A        +   + + +
Sbjct: 121 IDGPAHLRREQIDNAGNAAIEALRNNQAK---------LESGALSTAATITELVTAAVLV 171

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           +  L FF   G +I   +  +          +  R     +        ++A+ +   +G
Sbjct: 172 LFTLIFFLYGGRNIWAYVSKIFPAHVRDRVSEAGRAGYGSLTGYVRATFLVALTDAAGVG 231

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
           +   + G+P  + L  +  + A IP  GA +S     +  L+   +  A           
Sbjct: 232 TGLAIMGIPLALPLASLVFLGAFIPLIGALVSGLLAVVVALLAKGMVYALITLGLLIAVN 291

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
            +    L+P ++G  + +  L     +  G    G++G  +    +A +
Sbjct: 292 QLEAHVLQPLVMGRAVSIHPLGVVLAISTGGVLAGIVGALLAVPTVAFL 340


>gi|257388256|ref|YP_003178029.1| hypothetical protein Hmuk_2209 [Halomicrobium mukohataei DSM 12286]
 gi|257170563|gb|ACV48322.1| protein of unknown function UPF0118 [Halomicrobium mukohataei DSM
           12286]
          Length = 393

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 56/354 (15%), Positives = 125/354 (35%), Gaps = 30/354 (8%)

Query: 16  IMFIILVSLYFLKG-FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + F++  +L F+   F    +  L + + +  +Y     + E+  +  A ++ V ++   
Sbjct: 18  LGFVLAAALVFVAYRFVGTFVFGLFVYYATRRLYRRVRRRIEQ-PSVAAGVSLVGMVLPA 76

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           ++ L +     + ++     ++  A          + D+          T        L 
Sbjct: 77  LLLLAYTLGIALQQLSRFADEIDGAGSG-----SQIEDLLAMADPYLNLTVLSDPTALLD 131

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
            L      T  ++    +    G   L     +  M+   F+  RD    +     L   
Sbjct: 132 NLGGVGTITTTLESALGYLGVVGTGLLH----LFVMLALAFYLLRDDRRFAGWAGHLTAE 187

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--------VPSHVALGV 246
                +++    V +     F G  + A+  GLV G  Y L          +P    +GV
Sbjct: 188 --RTVFEEFVAAVDESFDKVFYGNILNAMITGLVGGIVYTLLNQIAPASVAIPYAALVGV 245

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLI----KGNIFNATCLFLWGAIELF--IVDKTLRPF 299
           +    ++IP  G  + +  ++ YL +     G  +     F   +  +   I D  +RP+
Sbjct: 246 LAGGASLIPIVGMKLVYVPMAAYLAVLAGTSGEGWWFVVAFAAVSFVVVDVIPDLLVRPY 305

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +     +L      F  + G    G  G+F+GP+++ L+    +  +  +  ++
Sbjct: 306 V--SGGELHTGALMFAYILGPLIWGWYGIFLGPIVLVLVTHFARIVLPELVTDE 357


>gi|29829036|ref|NP_823670.1| hypothetical protein SAV_2494 [Streptomyces avermitilis MA-4680]
 gi|29606142|dbj|BAC70205.1| putative membrane protein [Streptomyces avermitilis MA-4680]
          Length = 383

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/358 (13%), Positives = 101/358 (28%), Gaps = 16/358 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF--LKGFFAPVLSALIIGFTSWPIYSSFISKKEES 58
           M   +     +   +I      S  F  L G    +L A  +     P  S         
Sbjct: 1   MPRWLPRAMVLALALIAGFQFGSWAFHQLTGLLINILIAFFLALAIEPAVSWMAG-YGMR 59

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                 +  +  M +    +  L      ++ ++V          I    W++       
Sbjct: 60  RGLATFLVFLGAMIVTAGFVTLLGSMLAGQIIKMVEGFPDYLDSVI---SWVNTTFHTDL 116

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                   L H   L+   +                      L     ++ + +  F+F 
Sbjct: 117 RRVDIQDSLVHSDWLRRYVQNS---------ATGVLDVSAQVLGGLFQLLTIALFSFYFA 167

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            DG  + + L S+      A   +   I             ++A+  G+         G+
Sbjct: 168 ADGPRLRRALCSVLPPARQAEVLRAWEIAVDKTGGYLYSRGLMALISGIAHYILLQSLGI 227

Query: 239 PSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P    L V   +++  IP        A+ + +    N + A  + ++  +     +  L+
Sbjct: 228 PYAPVLAVWVGLVSQFIPTIGTYLAGALPMLIAFTVNPWYALWVLIFVVVYQQFENYMLQ 287

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           P L    + +     F  ++ G   +G +G  I    +A +       +       + 
Sbjct: 288 PKLTSKTVDIHPAVAFGSVIAGTALLGAVGALIAIPAVATLQAFLGAYVKRYDVTDDP 345


>gi|254369738|ref|ZP_04985748.1| hypothetical protein FTAG_01070 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122697|gb|EDO66826.1| hypothetical protein FTAG_01070 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 368

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/356 (15%), Positives = 116/356 (32%), Gaps = 6/356 (1%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           N + I+   +M    + L F   + AP+L+AL+I +    + +      +       V+ 
Sbjct: 16  NNEPIVFVGLMLFFYLVLTFSGDYIAPILAALVIAYLLDTLVNILQKFTKLKRI---VLV 72

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +  +   I  L  +F    + + +L+  V  A+     +   L ++           + 
Sbjct: 73  YIVYILFLIALLSLIFVLLPIIINQLIDFVKQASHILSSLKTSLEELSIKYPTILTEDRI 132

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            S       +    + +N   FI +  +    +     + +  + + +F+F +D   +  
Sbjct: 133 NSIVSWFDSIDWKKISSNVGSFILQNTATTLPVLFSVLIYLFLVPLMVFYFLKDKEKMIN 192

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
              S       A +   + + PK +     G  I  I    +    +    +   V L V
Sbjct: 193 WFKSFLPEENGALYYVWNDLKPK-LADYVRGKAIELIIVSTLTYIGFAYFNLNYAVLLAV 251

Query: 247 ITAIMAMIP-GGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
              +  +IP  G  I    V  + +L  G       + +   +   +    L P L    
Sbjct: 252 GVGLSVIIPYVGMVIITIPVIMVGILQFGLNGTFVSMLIVFFVIQALDGNLLVPLLFSEV 311

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           + +  +     ++      GL G+F    L  L           +   K +   N 
Sbjct: 312 LDMHPVGVVSAILIFGGIWGLWGIFFAIPLGLLFISGVNMFRNHLNGKKTQADINL 367


>gi|120401222|ref|YP_951051.1| hypothetical protein Mvan_0195 [Mycobacterium vanbaalenii PYR-1]
 gi|119954040|gb|ABM11045.1| protein of unknown function UPF0118 [Mycobacterium vanbaalenii
           PYR-1]
          Length = 384

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/294 (15%), Positives = 99/294 (33%), Gaps = 13/294 (4%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
           F+ ++         +  +S   LF   L F+    +     LV +V  + +    V  WL
Sbjct: 69  FLDRRGAPRGGAVALVLLSGFALFGGLLAFVITQFVEGAPALVGQVTTSIEG---VGTWL 125

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
           +D P  +   ++     +  ++L+   E          +   A        +     + +
Sbjct: 126 TDGPLDVSPQQINQLRDAAIEALRSNQEK---------LTSGALSTAGTVTEIVTGALLV 176

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           +  L F    G +I   +  +         +   R   + +        ++A+ +   +G
Sbjct: 177 LFTLIFLLHGGRNIFAFVTKMFPVHVRDRVRDAGRAGFRSLIGYIRATFLVALVDATGIG 236

Query: 231 SAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
               + GVP  + L  +  + A IP  GA ++     I  LI      A           
Sbjct: 237 VGLAIMGVPLALPLASLVFLGAFIPLVGAVVTGFLAVIVALIAKGWIYALITLGLIIAVQ 296

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            +    L+P ++G  + +  L     + GG    G++G  +    +A +    +
Sbjct: 297 QLEGHVLQPLVMGRAVAIHPLAIVLAIAGGGVLAGIVGALLAVPALAFVNSAMR 350


>gi|212635532|ref|YP_002312057.1| hypothetical protein swp_2742 [Shewanella piezotolerans WP3]
 gi|212557016|gb|ACJ29470.1| Conserved hypothetical protein [Shewanella piezotolerans WP3]
          Length = 364

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/318 (14%), Positives = 115/318 (36%), Gaps = 14/318 (4%)

Query: 45  WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
           WP+    +++   + T  A +  +  + L ++    L      +   L+  +      G+
Sbjct: 54  WPVAQ--MARIGINRTTAASLVLILFIGLMLLISFGLIPSLWKQGVSLIGDLPSMIDKGL 111

Query: 105 -PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY 163
               ++++  P  +  ++L         ++    +  L T  +  I +    +    L  
Sbjct: 112 FTAQQFINQYPQFVNPTQL--------DTMVAELKKMLDTQHLLDIGKQLLGYSASLLVL 163

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
            +  I + + +FFF +D   + +              +K+   + + I +   G  I  +
Sbjct: 164 MVYAILVPLLVFFFLKDKDELLRASKRFFPS-NRDLARKVWNEMHQQIFNYIRGKIIEIV 222

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLF 282
             G+V  + + +  +     LGV+T +  +IP  GA +    +++    +  I +     
Sbjct: 223 IIGVVSYAFFAVMDLRYAALLGVLTGLSVLIPYVGATLVTLPIALVAFFQWGISSEFGYL 282

Query: 283 LWGAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           + G   +  +D   L P L    + L  +     ++      G+ G+F    L +L+  +
Sbjct: 283 MIGYGIIQALDGNLLVPILFSDAVDLHPVFIIAAVLVFGGLWGVWGVFFAIPLASLVKAV 342

Query: 342 WKESIMAIKENKEKISSN 359
                +     +E   + 
Sbjct: 343 INAWPVHGAAVEETAKAE 360


>gi|2281317|gb|AAC45502.1| OrfB; similar to a Streptococcus pneumoniae putative membrane
           protein encoded by GenBank Accession Number X99400;
           inactivation of the OrfB gene leads to UV-sensitivity
           and to decrease of homologous recombination (plasmidic
           test) [Lactococcus lactis subsp. cremoris MG1363]
          Length = 301

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 86/246 (34%), Gaps = 8/246 (3%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           PV+ A +  +   PI      ++        V+  + +  +    + +     +  +   
Sbjct: 60  PVILAAVFYYLLNPIVDFLEKRRVPR-----VLTIIVLFLIIAALIAWGLIVAIPNVISG 114

Query: 93  VSKVVLANQHGIPVPR-WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           V     +  H +   +  ++ +       +   +     +S+      + KT  ++ +  
Sbjct: 115 VDNFASSVPHYVNTAQKEINALAKNPHFEQFRPQVDQFAKSIGNQLIDWSKTFSVNAVTT 174

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
             S          +S+I     LF+  RDG  ++  +  L  + +     K+   +   +
Sbjct: 175 L-SHLISKTTSILISLIVFPFVLFYLLRDGQRLNGFITHLLPNDWRKETSKVLHEINSQL 233

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLL 270
            +   G  ++AI   ++      + G+   VAL +    + ++P  G+ ++   + I  L
Sbjct: 234 SNYVRGQVLVAIAVAIMFMIGLPIIGLRYAVALAITAGFLNLVPFLGSFLAAIPMVIVGL 293

Query: 271 IKGNIF 276
             G   
Sbjct: 294 AIGGPL 299


>gi|209544129|ref|YP_002276358.1| hypothetical protein Gdia_1983 [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209531806|gb|ACI51743.1| protein of unknown function UPF0118 [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 408

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/348 (15%), Positives = 122/348 (35%), Gaps = 7/348 (2%)

Query: 1   MRETMLNPQGI-MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           +R +  +PQ I +  + +  +  +LYF      P++ AL++            ++     
Sbjct: 25  VRRSRFDPQTICLLILTVLAVFYTLYFAAAIILPIVLALVVNLLLSAPMRVLHTRLHLPK 84

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
           T  A++  + V  +       +       +      +     H   + R +  I      
Sbjct: 85  TLSALVLILGVFGVVGAIGTAISVPAAGWIARAPQTMAALQTHLAVLHRPIQMIQAANDR 144

Query: 120 SELWTKHLSHPQSLKILSETFL---KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
            E +   +S  Q      +  L    ++    +  F S   +    +   +  M++ LFF
Sbjct: 145 IENFLSVVSGRQGGGGGGQVVLLAPSSSPGGGLGTFGSSVLLGTRAFVGQLFTMMLMLFF 204

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
               G S+ ++   +           +I+  + + +      +TII +  GL      W+
Sbjct: 205 LLAQGDSLLRRFVEIMPTFADKRRAVQIAYQIERNVSLYLTTITIINVLVGLANMLQCWV 264

Query: 236 AGVPSHVALGVITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
            G+P+ +  GV+  ++  IP   P+        + L +  +   A            +  
Sbjct: 265 FGMPNPLLWGVLAFLLNYIPIIGPLTGIVIYFVVSLFVFPSALQALLPPTVYLCIHLMEG 324

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +T+ P ++     L  +     L+      G+ G F+   ++A+  +I
Sbjct: 325 ETITPMVLARRFTLNPVLVMGSLMFWDWLWGVWGAFLSVPMLAVFKII 372


>gi|120610682|ref|YP_970360.1| hypothetical protein Aave_2002 [Acidovorax citrulli AAC00-1]
 gi|120589146|gb|ABM32586.1| protein of unknown function UPF0118 [Acidovorax citrulli AAC00-1]
          Length = 434

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/318 (14%), Positives = 107/318 (33%), Gaps = 9/318 (2%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL---FYYGML 87
           F P++ +L++     PI ++            A +  + ++         L       + 
Sbjct: 103 FIPLMLSLLLTIALQPIVTALRRWYIPR-WLSAGVLLLGIVGGLGGTAWSLSDGAAELVD 161

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            +     KV  A +  +  P  L  +       E        PQ+ + +    ++    +
Sbjct: 162 SLPVAARKVRDAMRTNMRGPSPLDTMQKAASQIEQAATESIPPQTRRGVQRVVIERAPFN 221

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW--KKISR 205
            I  +     +  +     +  ++   FF    G    ++L  +            ++  
Sbjct: 222 -IRDYVWTGTVGLVSAAGQLTVVVFLTFFSLASGNLFRRKLVRIAGQSLERRKITMEVLD 280

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   I+   L     ++  G+  G AY L G+ +    GV+  ++ + P    I  T  
Sbjct: 281 DITGQIQRYLLVQVATSVLVGIGTGVAYALLGLENAAVWGVVAGVLNLAPYVGSIVVTGA 340

Query: 266 SIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
           S  +     G +  A  +     +   IV   L P+L     ++  +  F  ++      
Sbjct: 341 SALVAFLQFGTVDMALAIGGASLLIHTIVGNLLTPWLTSRTSRMSPVAVFVSVLAWGWLW 400

Query: 324 GLLGLFIGPVLMALIAVI 341
           GL G+ +G  +M ++  +
Sbjct: 401 GLWGVLLGIPVMMVVKAV 418


>gi|92114935|ref|YP_574863.1| hypothetical protein Csal_2818 [Chromohalobacter salexigens DSM
           3043]
 gi|91798025|gb|ABE60164.1| protein of unknown function UPF0118 [Chromohalobacter salexigens
           DSM 3043]
          Length = 363

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 104/325 (32%), Gaps = 14/325 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM-LEM 89
            AP  +AL++ F    + + F  +        +V+         ++ L  +    +  + 
Sbjct: 41  LAPFFTALVLAFLLEGVVAWFERR--GLPRLASVLLVFLFFIGALLALALIIMPLVWNQT 98

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
            ELV +       G      L      +         ++              T      
Sbjct: 99  VELVQEAPRMFASGQAWLDGLQSRYPTLITPAQIEDWIATAGREA--------TQLGQRA 150

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
              +       L   + ++ + I +FF  +D   ++Q L SL          +I   +  
Sbjct: 151 LTLSLASLGNLLGLLIYLVLVPILVFFLLKDRERLTQFLLSLLPR-KRVLMTRIWHEMDD 209

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIY 268
            I +   G  I  +  G+   + +W  G+P    L +I  +  ++P  GA ++   V+  
Sbjct: 210 QIANYIRGKAIEILIVGVAAFATFWAFGLPYTALLALIVGLSVLVPYIGAAVATLPVAAV 269

Query: 269 L-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
                G       + +  A+   +    L P L    + L  +     ++      G  G
Sbjct: 270 AGFHFGISEQFAYVLIAYAVLQALDGNVLVPILFSEAVNLHPVSIILAVLFFGGIWGFWG 329

Query: 328 LFIGPVLMALIAVIWKESIMAIKEN 352
           +F    L  L+  + +     +++ 
Sbjct: 330 VFFAIPLATLLKALVQAWPRGVRDP 354


>gi|269960635|ref|ZP_06175007.1| permease PerM, putative [Vibrio harveyi 1DA3]
 gi|269834712|gb|EEZ88799.1| permease PerM, putative [Vibrio harveyi 1DA3]
          Length = 356

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/350 (14%), Positives = 119/350 (34%), Gaps = 14/350 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +    I+    +++YF     AP+L A+++ +   WP+      +     TF  + 
Sbjct: 15  DPHAVSLVAILLFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQMC--RLGIPRTFSVIT 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + L ++ +  L      ++  L++ +         + ++++ +P           
Sbjct: 73  VILIFIGLMLIAVFGLVPTIWTQVGNLINDIP---NMYAGLQKFIATLP----QRYPELA 125

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +L   +++   ++      G   +    +   +      + +I + + +FF  +D   + 
Sbjct: 126 NLEIVETVVTNAKNQAIGLGESVVKGSLASL-VSLATLAVYLILVPLLVFFLLKDKEEML 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +          K+   + + I +   G  +  +  G V    + +  +     L 
Sbjct: 185 RMASGILPK-NRKLANKVWHEMNEQISNYIRGKVLEILIVGGVSYVTFAILDLRYSALLA 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V   +  +IP  GA      V+I  L   G       L +   I   +    L P L   
Sbjct: 244 VAVGLSVLIPYIGAAAVTVPVAIVGLFQWGLTPQFYWLLVAYGIIQALDGNVLVPVLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            + L  +     ++      G  G+F    L  L+  +W       +   
Sbjct: 304 AVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWNALPSTEENEP 353


>gi|322514367|ref|ZP_08067416.1| PerM family permease [Actinobacillus ureae ATCC 25976]
 gi|322119737|gb|EFX91779.1| PerM family permease [Actinobacillus ureae ATCC 25976]
          Length = 354

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/343 (13%), Positives = 112/343 (32%), Gaps = 13/343 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           ++   +PQ +    I+ I    +YF      P+L A++  +   WPI    +   +    
Sbjct: 10  KQKFNDPQTVALLGILLIGFGIIYFFSDLIMPLLVAIVFAYLLEWPI-RFLMRHFKFPRF 68

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              V+     + L I   + +      +    +  +         +  WL  +P      
Sbjct: 69  LSLVVVLGGFISLLIFLFMVMLPSLWNQAVTFIRDLPSMFNL---LNAWLEALPEHYPEL 125

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             +    +   +LK     F ++     +    S  G+    + + ++      FF  +D
Sbjct: 126 IDYAMLDTLMGNLKTKILGFGESLLTLSVHSIISLVGLGIYAFLVPLMV-----FFLLKD 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                +    +           +   + + I +   G  +  +  G+   + +    +  
Sbjct: 181 KHIFVRSFVRMLPK-NRRLAANVWFEMQQQIANYIRGKFLEILIVGIATYALFLFFDLRY 239

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRP 298
            + L V   +  ++P  GA +    V++  L +  +       L   +   ++D   + P
Sbjct: 240 PLLLSVAVGLSVLVPYIGAVLVTIPVALVALFQFGLSPEFYYLLLTFVISQLLDGNLVVP 299

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           FL    + L  L     ++      G  G+F    L  L+  +
Sbjct: 300 FLFSETVNLHPLTIIVAVLIFGGLWGFWGVFFAIPLATLVKAV 342


>gi|254852442|ref|ZP_05241790.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|258605752|gb|EEW18360.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
          Length = 384

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 116/358 (32%), Gaps = 25/358 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  ++ + LY L+     +L   I  F    + +  + +       +
Sbjct: 5   EKLKENDTARRVLVFVLLGIVLYLLRSMIDLILLTFIFAFLVTRLENVILKRVHVPRKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V     V ++      + ++ +LV  +V    +  P    +     G      
Sbjct: 65  VIVLYSLVAVFLYVAIVHFLPILINQISQLVDSLVKLYNN--PSDNTIVKWIVGFLKESN 122

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             K+L                 G+DFI    S  G + L + L++I  +    FF  +  
Sbjct: 123 IQKYLQ---------------AGVDFIIASLSGIGSVGLSFFLALILSL----FFSLEKE 163

Query: 183 SISQQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            ++              +K+     +              +IA+    +   A +L   P
Sbjct: 164 RVTSFTGQFMTSKVGFIFKEAAFFGKKFVSTFGVVLEAQLMIALVNTFITTIALYLMDFP 223

Query: 240 SHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             ++L ++  ++ +IP    I     + +     G   +   + +   I   I    L P
Sbjct: 224 QLLSLSIMVFVLGLIPVAGVIISCIPLVLIAYSVGGFQDVVYILITVVIVHAIETYILNP 283

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            L+     LP   TF  L+      G+ GL +G  +   +  I +       +    I
Sbjct: 284 KLMSSKTNLPVFYTFIILIFSETFFGVWGLIVGIPVFVFLLDILEVRNAEDLKKTNNI 341


>gi|225376591|ref|ZP_03753812.1| hypothetical protein ROSEINA2194_02233 [Roseburia inulinivorans DSM
           16841]
 gi|225211474|gb|EEG93828.1| hypothetical protein ROSEINA2194_02233 [Roseburia inulinivorans DSM
           16841]
          Length = 379

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/337 (13%), Positives = 117/337 (34%), Gaps = 10/337 (2%)

Query: 14  WMIMFIILVSLYF--LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           W +  +I        L  +F P +  +I    + P+      + + +  + +VI  V V+
Sbjct: 17  WAVFLLIFAFTLLPKLLIYFMPFVVGMIFAMIANPMVKFLEKRIKINRKYGSVIMIVLVI 76

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWASELWTKHLSHP 130
            L ++            +   ++ +   + + G      ++ +       +L        
Sbjct: 77  GLVVLACYGAGTILAKGIGAFMAYLPTMSANAGTEFSEAINQL--QQLLEKLPFTQNVDL 134

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFG---MIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            ++    + FL               G       D  + I+  ++A +FF  D   +   
Sbjct: 135 SAIGTAIQDFLTNFVSSSDSATLGAIGEFAKSLPDMIVGIVVGLLAAYFFIADKDKLITG 194

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           ++      F A  ++I + +   +   F     I     ++L     +  V     +   
Sbjct: 195 VEKHLSAGFLAKTERIYKQLVHAVGGYFKAQFKIMGVIYVILLIGLLILRVDFAWLIAFG 254

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A + M+P  G        ++  L  G+   A  + +   + L +V + ++P L+G  + 
Sbjct: 255 IAFLDMLPVFGTGTVLCPWAVIKLFTGDYKMAVGMIVLYVVSL-VVHQIVQPKLIGDSVG 313

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L    +   +  G R   ++G+ +   +  ++  +++
Sbjct: 314 LDPFASLLFMFIGYRVGSVVGMILAIPIGMILINLYE 350


>gi|325663754|ref|ZP_08152158.1| hypothetical protein HMPREF0490_02899 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470247|gb|EGC73480.1| hypothetical protein HMPREF0490_02899 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 397

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 100/294 (34%), Gaps = 5/294 (1%)

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMWASELWT 124
           + V  + L +  +  + +    ++ + +  +  + Q  IP    W  D+         W 
Sbjct: 86  SLVLSIMLVLGIIFVVIFVVFPQLGKTILMLGESIQVFIPKLELWAEDLFQNNTGIIEWI 145

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           + +       I        NG   +           +    +     +   +       +
Sbjct: 146 ETMEFDWDKMIQGGIDFLRNGAGSVLNTTFAAAKSIVSGLTTFFISAVFACYILLQKKKL 205

Query: 185 SQQLDSLGEHLFPAYWK----KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           + Q+  +     P         I  +  +   +   G  + A+  G +   +  +  +P 
Sbjct: 206 TVQIQKVLYAFLPEKKVSTVLDICSLTYRTFSNFLTGQCMEAVILGTMFFISMSILRMPY 265

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + +GV+ A  A+IP         +  +L++  N   A    +   +   +    + P +
Sbjct: 266 ALLIGVLIAFTALIPIFGAFIGCVIGTFLILMVNPMQAIGFIVLFLVLQQVEGNLIYPHV 325

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           VGG + LP +     +  G   MGL+G+ I   ++++I  +++  +      K 
Sbjct: 326 VGGSVGLPSMWVLVAVSLGGSLMGLVGMLIFIPMVSVIYTLFRGYVYERLRKKN 379


>gi|221640239|ref|YP_002526501.1| Lipocalin-related protein and Bos/Can/Equ allergen [Rhodobacter
           sphaeroides KD131]
 gi|221161020|gb|ACM02000.1| Lipocalin-related protein and Bos/Can/Equ allergen [Rhodobacter
           sphaeroides KD131]
          Length = 375

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 113/326 (34%), Gaps = 14/326 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P +    I +   PI               A+I+           LL +    +  + 
Sbjct: 47  ILPFIVGGAIAYFLDPIADRLERAGLSRVAATALISVAM--------LLVVVLLVLSVIP 98

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            LVS++         + R L          +L  +  +  Q+L  + +T  +  G   + 
Sbjct: 99  TLVSQLTALIDAAPTIFRQLHSFLL-DHFPQLSDETSTARQTLLSIGDTIKERGGE--VA 155

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     ++  + ++ + +  F+   D   +  ++DS          + ++R + +V
Sbjct: 156 NTLLTSAYGVINAMIFMVVVPVVSFYLLLDWDPMVAKIDSWLPRDHAPTLRHLAREIDEV 215

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           +     G   + +  G     A    G+   + +G I   +  IP    +   A++I L 
Sbjct: 216 LAGFVRGQISVCLVLGTFYAVALAAVGLQFGLVVGAIAGAITFIPYVGALIGGALAIGLA 275

Query: 271 IK---GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +    G+  +   +    A+  F+    + P LVGG + L  L   F L       G +G
Sbjct: 276 LFQFWGDWLSIGLVAGIFALGQFLEGNVITPRLVGGSVGLHPLWLLFALSAFGSIFGFVG 335

Query: 328 LFIGPVLMALIAVIWKESIMAIKENK 353
           + +   + A I V+ +  I     ++
Sbjct: 336 MLVAVPVAAAIGVLARFGIRQYTSSR 361


>gi|148984606|ref|ZP_01817874.1| hypothetical protein CGSSp3BS71_01142 [Streptococcus pneumoniae
           SP3-BS71]
 gi|147922997|gb|EDK74112.1| hypothetical protein CGSSp3BS71_01142 [Streptococcus pneumoniae
           SP3-BS71]
          Length = 316

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 107/301 (35%), Gaps = 10/301 (3%)

Query: 43  TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH 102
            + PI +      + +     +I   +++   ++ +++L    + ++  L   ++ +   
Sbjct: 1   MTNPIVTFLNKVCKLNRLLGILITLCTLVWGMVIGVVYLLPILINQLSSL---IISSQTI 57

Query: 103 GIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD 162
              V   + D+        L  +      +L  +    +  N ++ +           + 
Sbjct: 58  YSRVQDLIIDLSNYPALQNLDVEATIQQLNLSYVD---ILQNILNSVSNSVGSVLSALIS 114

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
             L +I   + L +F  DG      L+         +   + + +   I     G++I A
Sbjct: 115 TVLILIMTPVFLVYFLLDGHKFLPMLERTILKRDRLHIAGLLKNLNATIARYISGVSIDA 174

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCL 281
           I  G +    Y + G+   +   + + +  +IP  G  I    + I  +      +   +
Sbjct: 175 IIIGCLAYIGYSIIGLKYALVFAIFSGVANLIPYVGPSIGLIPMIIANIFTD--PHRLLI 232

Query: 282 FLWGAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +   + +  VD   L P +VG  +K+  +     L+      G++G+ +     +++  
Sbjct: 233 AVIYMLVVQQVDGNILYPRIVGSVMKVHPITILVLLLLSSNIYGVVGMIVAVPTYSILKE 292

Query: 341 I 341
           I
Sbjct: 293 I 293


>gi|51473810|ref|YP_067567.1| permease [Rickettsia typhi str. Wilmington]
 gi|51460122|gb|AAU04085.1| possible permease [Rickettsia typhi str. Wilmington]
          Length = 351

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 121/352 (34%), Gaps = 11/352 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N   +   + + + + S   +     P   A II +   P      SK E S+ F + I
Sbjct: 1   MNRTAVFLLVFLTLSISSFMLIPDTIKPFFIAFIISYLLQPAIYFIESKLEISNKFASSI 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + +F +    L          +  ++     +      +L          ++++ 
Sbjct: 61  MYLIFLSIFFLIFTILVPI-------IYGQIFTLINNIPKYKDYLQSEILPPIMEKIYSI 113

Query: 126 HLSHPQSLKILSETFLKT--NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                  +K     F+ +    +  I     R+ +I ++  +  + + I LF+F RD   
Sbjct: 114 EPDIADKIKHSLSNFINSIFTILGSIANNFWRYTIITINIFVLFLLIPIILFYFLRDWNK 173

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           I   + SL          +I   +  ++ S   G   I +        A+ + G+   + 
Sbjct: 174 IIANMKSLLPIKTRPKILEILSAINNLLSSYIRGQLNICLLLSTYYSIAFTVIGLDLALL 233

Query: 244 LGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           LG++T  + +IP           + I  L  G       + +   I        L P ++
Sbjct: 234 LGILTGFLVIIPFLGTFISFLLTLIIGYLTFGITSKLLYIMIIYLIGNIGESYILTPKII 293

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G  I L  L   F +       G++G+F    +  +  ++    I   K +K
Sbjct: 294 GDKIGLHPLWIIFAIFACGSLFGIIGIFFAIPIAGITKILLLNLIKFYKSSK 345


>gi|46204696|ref|ZP_00049603.2| COG0628: Predicted permease [Magnetospirillum magnetotacticum MS-1]
          Length = 279

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 68/200 (34%), Gaps = 1/200 (0%)

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           +   D I   A              +  +   FFF  DG SI   +  L          +
Sbjct: 2   SENQDSIVSGALGAATTIGHVLAGALIALFCTFFFLLDGRSIWSWVVGLLPLRARDRVHQ 61

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             R     + +      ++A  + + +G           + LG++  + + IP    I  
Sbjct: 62  AGRRGIVTLAAYTRTQILVAAVDAVGIGVGAAFFVPSLALPLGILVFVGSFIPIVGAIVT 121

Query: 263 TAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
            ++++  +L+      A  +     +   I    L+PFL+G  + L  +     +  G  
Sbjct: 122 GSIAVLVVLVAQGWVQALVMLGIVLLVQQIEGHILQPFLMGHAVSLHPVAVLLVVAAGSF 181

Query: 322 TMGLLGLFIGPVLMALIAVI 341
             G++G      + A++  +
Sbjct: 182 AAGIVGALFAVPIAAVLNTV 201


>gi|110668929|ref|YP_658740.1| hypothetical protein HQ3040A [Haloquadratum walsbyi DSM 16790]
 gi|109626676|emb|CAJ53142.1| conserved hypothetical protein [Haloquadratum walsbyi DSM 16790]
          Length = 379

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 62/371 (16%), Positives = 124/371 (33%), Gaps = 34/371 (9%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKG-FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +N +     +    +   + FL   F AP+  A+ + +++   Y + + +    ++  A 
Sbjct: 1   MNARRFAVALFGLAVFSVIGFLAYEFIAPLTIAVFLYYSTR-KYYTLLERFRLPASIRAG 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           IA  S+    I  + +     +LE +  + +  L +     V           W   +  
Sbjct: 60  IALGSLAIPLIFLVSYAGVLLVLEARAFIDEYDLISVAAENV----------SWFGSVSR 109

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                 Q L    ++   T  IDF    AS    +   + L++  + I  ++   DG  I
Sbjct: 110 VPEFTVQGLYNAYQSGQLTPLIDFATAHASVLTSMISQFTLNLFIITIVTYYLLVDGDKI 169

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL--------A 236
              L    +       ++      + + S   G  +  +   L+    + +        A
Sbjct: 170 GAWLLRFDDEAI---IREYLEAADRELESVLFGNLLNVLSISLIAIGVFNVYNVFVPSPA 226

Query: 237 GVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLI--------KGNIFNATCLFLWGAI 287
            VP     G +T I ++IP  G  I +  ++I   +            + A  L +   +
Sbjct: 227 EVPYPALAGGLTGIASLIPVVGMKIVYFPLTILSAVPILLGGNPSNLTYIAGLLVIAIVV 286

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              I D  LRP L G                G   +G  GLF  P+L+ +       ++ 
Sbjct: 287 IDTIPDIVLRPLLSGDET--HVGLLMLAYTLGPVVLGFYGLFFAPILLVIGLTFANTALP 344

Query: 348 AIKENKEKISS 358
            +        +
Sbjct: 345 RLLNTANNADT 355


>gi|226945734|ref|YP_002800807.1| hypothetical protein Avin_36860 [Azotobacter vinelandii DJ]
 gi|226720661|gb|ACO79832.1| conserved hypothetical protein [Azotobacter vinelandii DJ]
          Length = 368

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/334 (15%), Positives = 124/334 (37%), Gaps = 14/334 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +F     +Y L    +P L  +++ +   P+     ++    +          V+ +F +
Sbjct: 13  VFFSGWLVYLLMPILSPFLIGILLAYLGDPLVDRLEARGLSRTW--------GVIAVFAL 64

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLK 134
             L L    +  +  L  ++V   +    +  WL    +P       L        Q   
Sbjct: 65  FGLLLVLALLFLLPSLGRQLVHLYELAPQMLDWLQQVVLPWVQVKLGLAKGFWHLEQLKS 124

Query: 135 ILSETFLKT-NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           +      KT N +  +   A+  G+  L +  +++ + +  F+  RD   +  +L +L  
Sbjct: 125 MFVGQLDKTTNVLTQLLSQATASGLALLAWLGNLLLVPVVSFYLLRDWDILVAKLRTLLP 184

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                    +     +V+ +   G  ++ +  G+V      L G+   + +G++  + ++
Sbjct: 185 RRREGVVVGLVGECHEVLGAFLRGQMLVMLALGVVYALGLMLVGIDLGLLIGLLAGLASI 244

Query: 254 IPGGAPISFTAVSIYLLI---KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +P    +     ++   +    G+ +    +    ++   +    L P LVG  I L  +
Sbjct: 245 VPYMGFVVGIGAALVAALFQFGGDPYPLIGVVAVFSVGQLLEGMLLTPLLVGDRIGLHPV 304

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              F ++ G +  G  G+ +   + A+I V+ + 
Sbjct: 305 AVIFAVLAGGQLFGFTGVLLALPVAAVIMVLLRH 338


>gi|315282307|ref|ZP_07870742.1| membrane protein YdbI [Listeria marthii FSL S4-120]
 gi|313614043|gb|EFR87752.1| membrane protein YdbI [Listeria marthii FSL S4-120]
          Length = 345

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/361 (14%), Positives = 115/361 (31%), Gaps = 26/361 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
            + L  + + R  +  +I   LY L+     +L   I  +    + +  + +       +
Sbjct: 5   SSFLQNRSVRRVGVFILIAFVLYLLRSQMNIILLTFIFSYLITRLENFILRRISIYRQII 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    +  + +   +        ++ +LV       +                     
Sbjct: 65  VLLLYALIAAVIVFVFVKYIPVLADQINQLVKFGNTFLKT-------------------- 104

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
              +      +  L+  F      +        +        +++   ++   FF     
Sbjct: 105 -DSNNDFINYIVSLANQFDIMKYTEQGVSMILTYLTNVGTVLMNVFIALMLSLFFSLGKE 163

Query: 183 SISQQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            +    +          +++                    IIA+    +   A W+ G P
Sbjct: 164 HLVSFTNQFSTSKIAFIYEEVKFFGSKFVATFGKVIEAQFIIALVNAFLTTIALWILGFP 223

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             + L ++  ++ +IP  G  IS   ++I     G +     + +   I   +    L P
Sbjct: 224 QLMTLSIMVFLLGLIPVAGVIISLIPLTIIGYSIGGVEYIFYILIVVIIIHALESYVLNP 283

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKEKIS 357
            L+     LP   TF  L+ G    G+ GL +G PV+M  + V+   +   I++ K+ IS
Sbjct: 284 KLMSAKTNLPVFYTFIILIFGEHFFGIWGLIVGIPVVMFFLDVLGVTNQEEIEQPKDTIS 343

Query: 358 S 358
            
Sbjct: 344 H 344


>gi|89891578|ref|ZP_01203082.1| conserved hypothetical transmembrane protein [Flavobacteria
           bacterium BBFL7]
 gi|89516125|gb|EAS18788.1| conserved hypothetical transmembrane protein [Flavobacteria
           bacterium BBFL7]
          Length = 367

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/343 (13%), Positives = 122/343 (35%), Gaps = 18/343 (5%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +F++L  ++ ++     +  A +I     PI      + +  +T   +I  + ++ +   
Sbjct: 25  VFVLLWFIWKIQSVLLYIGIAAVISLIGRPIVVFLRDRLKLHNTLAVIITILFILIILTG 84

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
               +    + + + L           I +     ++         +          +I 
Sbjct: 85  VTYMIIPIMLEQGENL---------SRIDIEEVKGNLEVLNIEISEYFGIKRVNIFERIQ 135

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
              +++   ++ IP+F +       +  + +  ++   FF  +D   + + +    +   
Sbjct: 136 GLEYVQNFDVELIPQFVNGIFGTLGNIMIGLFSVVFIAFFLLKDSRLLVEGVLVFSKKGT 195

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
              + +    + K++   F+G+        ++      + GV + + +    A++ +IP 
Sbjct: 196 EGQFLRAFNKIKKLLSRYFIGLVFQVFVLFVLYSIILLIVGVENALIIAFFCALLNLIPY 255

Query: 257 GAPISFTAVSIYLLIKGN--------IFNATCLFLWGAIELFIVDKTL-RPFLVGGPIKL 307
             P   + + +  +I  N        I     +   G   + ++D  + +P + G  +K 
Sbjct: 256 LGPAIGSILMMGFVISDNLGADFTETILPKLIIVAIGYSIVQLIDNFINQPLIFGKSVKS 315

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             L  F  ++      G+LGL +       + VI KE +   K
Sbjct: 316 HPLEIFIIILIAGLLFGILGLVLAIPTYTALKVISKEFLSEYK 358


>gi|323693991|ref|ZP_08108175.1| sporulation integral membrane protein [Clostridium symbiosum
           WAL-14673]
 gi|323501927|gb|EGB17805.1| sporulation integral membrane protein [Clostridium symbiosum
           WAL-14673]
          Length = 370

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 55/365 (15%), Positives = 129/365 (35%), Gaps = 21/365 (5%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWP----IYSSFISKKEESS 59
           T    + ++   +   + +S  F+   F P L + +I     P    +      K+   +
Sbjct: 5   TEKQRKALLTAGVTAAVYLSFKFILPLFLPFLVSYLIALILRPSANFLERKLRVKRRGKT 64

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYY-----GMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
             + +     +  + I+ LL   ++       +E  +LV+ V +  Q+      WL+ + 
Sbjct: 65  YAVPIGVIGGIEMILILALLGAGFFYGGRRLFMEANQLVNAVPVWVQNFD---EWLTGMC 121

Query: 115 GGMWASELWTKHLSH---PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
             +       + +        L   +  F      + +    S FG       +++I  I
Sbjct: 122 HSVETFCRLQEGVLVKMVQDVLLGTARAFKNATMPNLVVNSVSVFGFFIKVAIITVILFI 181

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
            ++           ++ +S+    F    K+++      +R+  + + +       +   
Sbjct: 182 ASILSLQEMDELRERRYNSIFRREFSLLGKRLALTGNAWLRTQAVILFLTTC----LCIL 237

Query: 232 AYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
                G P ++  G+   ++  +P  G         I+L+++   +    L     +  F
Sbjct: 238 TLIAIGNPYYIIAGIGIGLLDALPIFGTGTVLIPWGIFLMLQQKWYQGVMLLGLYLVCYF 297

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           + +  +   L+G  + L  L T   +  G++  G LG  +GPV + LI  + +E      
Sbjct: 298 MRE-FVEAKLMGKKMGLSPLETLMSMYVGLQLFGFLGFILGPVGLMLIEDLVEEYWKNGN 356

Query: 351 ENKEK 355
               K
Sbjct: 357 NTCNK 361


>gi|284045779|ref|YP_003396119.1| hypothetical protein Cwoe_4330 [Conexibacter woesei DSM 14684]
 gi|283950000|gb|ADB52744.1| protein of unknown function UPF0118 [Conexibacter woesei DSM 14684]
          Length = 358

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/358 (14%), Positives = 130/358 (36%), Gaps = 16/358 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLK-GFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R  ++ P   +  +  F  +V+L  L  G    +  A ++     P+ S+ + +      
Sbjct: 9   RVELIVPWRTLFTVAAFGAVVALAILSLGSLLSIFVAGVLALGLDPVVSALVRR-GWKRG 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             AV+   SV    ++ +L        ++++ ++++          PR+  ++      S
Sbjct: 68  PAAVVVLASVFAAVVLIVLIAVGPLWDQVRDFIAEI----------PRYWEELTN----S 113

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             + + +S      +       T G+                  LS++ +     F   +
Sbjct: 114 AAFQRLISSGTQSDVSEALKDLTAGLPEAASTLLGAAGGIFGSLLSMVTLTFLALFLLME 173

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
             +I+  L           W  +       I S+ +G   I++    V G + WL G+P 
Sbjct: 174 RPAITGWLFGFAPPEVEQRWHPVLEDSISAISSSLIGNVAISLVAATVAGLSSWLFGLPF 233

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + L VI  ++ +IP         + + + +  +   A  + +   +   + +  + P +
Sbjct: 234 PIVLAVIVGLLDLIPQVGATIAAVILVAVALTVSTEAAIAMLVIQLVYQQVENYVVYPLV 293

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
               ++L    T   ++     +G++G  +     A+I ++ +E+    +E  + +  
Sbjct: 294 YRRAVELTAFTTIVSVLVASSILGVVGAILAVPFAAVIKIVVREAGRPRRERMDALRE 351


>gi|254511545|ref|ZP_05123612.1| membrane protein [Rhodobacteraceae bacterium KLH11]
 gi|221535256|gb|EEE38244.1| membrane protein [Rhodobacteraceae bacterium KLH11]
          Length = 357

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 104/312 (33%), Gaps = 14/312 (4%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P +    I +   PI      K   S      I T+  +  F++ +L +    + ++ +L
Sbjct: 32  PFVIGGAIAYFLDPIADRME-KLGLSRMAATGIITIVGVLGFVLMILMVVPALITQLLDL 90

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
           +  +    +                          S+   + +     LK+   D +   
Sbjct: 91  IDTLPSLFKELRTFVE---------KQFPALLDRESNTHQMLVSFGETLKSKTGDVLQTV 141

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
            +  G    +  + ++ + +   +   D   +  ++  L         K+++  +  V+ 
Sbjct: 142 LASLGSAI-NVVVLLVIVPVVAVYLLMDWDRMIARIGELLPRDHAPTIKRLAGEIDAVLA 200

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
           S   GM  + +  G     A  L G+   + +G I  ++  IP    +    ++I L + 
Sbjct: 201 SFVRGMGTVCLILGTYYAVALMLVGLQFGLIVGFIAGLVTFIPYLGALIGGTLAIGLALF 260

Query: 273 GNIF-NATCLFLWGAIELFIVD--KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
                 A    + G   +  V     L P LVG  + L  +     L       G +G+ 
Sbjct: 261 QFWGDWAHIGLVAGIFAIGQVTEGNFLTPKLVGSSVGLHPVWLLLALSVFGALFGFVGML 320

Query: 330 IGPVLMALIAVI 341
           I   + A + V+
Sbjct: 321 IAVPVAAALGVL 332


>gi|116622078|ref|YP_824234.1| hypothetical protein Acid_2965 [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225240|gb|ABJ83949.1| protein of unknown function UPF0118 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 612

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/344 (13%), Positives = 109/344 (31%), Gaps = 28/344 (8%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I    I+  ++  LY  +  F P+  A+ +     P  +   + +    T    +  + 
Sbjct: 12  SIRTAGILIGVIFVLYAAREIFVPLAFAITLALILSPAVAWLQTMRVAR-TLAVALVMMI 70

Query: 70  VMCLFIVPLLFLFYYGMLEMKEL--VSKVVLANQHGIPVP-------------------R 108
            + L       +F   +    +L    + + +    I  P                    
Sbjct: 71  TIALACGTAWVIFNQLVDVANDLPRYQQNIDSKLKAIRAPGKGALGRATASVKELGKELS 130

Query: 109 WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII 168
            +   P  +  + +  +  + P     +         ++++      F      + ++ +
Sbjct: 131 AVPATPAPIPGARIGRRPENQPGRPVAVQVVDEPATELEYVRDVVRPF---LGPFGVAGM 187

Query: 169 FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLV 228
            +I ++F   +     ++    +G        + +     +V R   +   ++ +G G +
Sbjct: 188 VLIFSVFLLTKQNDLRNRLFRLVGLDQLNMMTQALDDATSRVSRYLLMQ-FLVNVGFGTL 246

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF--TAVSIYLLIKGNIFNATCLFLWGA 286
            G+  +L G+P  V  G + AI+ ++P    I        + L +  N      +FL  A
Sbjct: 247 CGAGLYLIGIPYAVLWGCVAAILRLVPYAGAIVAASLPFMLSLAVFDNWTPPLLVFLLFA 306

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
                    + P L G    +  L      V      G  GL +
Sbjct: 307 TLEVGTGNFIEPMLYGAHTGISALALLLTTVFWTALWGPPGLIL 350


>gi|113477436|ref|YP_723497.1| hypothetical protein Tery_4001 [Trichodesmium erythraeum IMS101]
 gi|110168484|gb|ABG53024.1| protein of unknown function UPF0118 [Trichodesmium erythraeum
           IMS101]
          Length = 368

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/338 (15%), Positives = 122/338 (36%), Gaps = 15/338 (4%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + ++     ++ A+I+  +  P+ +    +         VI  ++++   I  +L +   
Sbjct: 28  WQVRSLIVLLMIAVILAASISPLVN-LTERIRLPRWLGVVIVYLTLISGLISVVLIIGPQ 86

Query: 85  GMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGM--WASELWTKHLSHPQSLKILSETFL 141
              +++ L+ ++ L ++        ++S +      W ++L+         +    +  L
Sbjct: 87  VFEQIERLLRQLPLFSKSISDNFENFVSSLTQNPPDWINQLFDTKSVTSWVISSSQQLLL 146

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
           ++                 L   +S+I  +    +   D  ++   +  L    +    +
Sbjct: 147 RSY----------SLTKGVLGSIVSLILALFISGYMVSDSQTLITSIVKLFPQPWDKRLE 196

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA-LGVITAIMAMIPGGAPI 260
                V K +     G  I++   GL   +     G+      LG I A+  +IP   PI
Sbjct: 197 DQVIPVTKRMGGYIRGRIIVSAILGLATTTGLGFLGLQDFSLGLGAIAAVTNLIPFIGPI 256

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
                ++ + I    +    + +   I   I    L P LVG  + +  L     ++ GV
Sbjct: 257 LGAVPALIVAIAKGGWLFLWVIILYYIIQNIETYILDPLLVGSSVGVHPLYQLLSVLVGV 316

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           + +G++G  I P   A  A + +   +  K   E I S
Sbjct: 317 QLLGIIGALIIPPWFAGAAALVENLYLKPKLEAENIQS 354


>gi|298506490|gb|ADI85213.1| membrane protein UPF0118 [Geobacter sulfurreducens KN400]
          Length = 350

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 109/336 (32%), Gaps = 29/336 (8%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFF-----APVLSALIIGFTSWPIYSSFISKKEESST 60
           + P+          I   L  L G F     + VL++L+I +   P      +K      
Sbjct: 1   MRPRDAAHIAWFLAITFGLVLLAGHFAVHSLSAVLTSLVIAYLLNPAMKFMEAKGLGRLP 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            +AV+            L       +  +  +             VPR++ ++       
Sbjct: 61  AIAVLY-----------LAIAVGILLALILLIPYLSHQLEAFPRAVPRYVDNL---QLVM 106

Query: 121 ELWTKHLS------HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
           E W   L+          L   +E  LK   ++   +   +    F     +++   I +
Sbjct: 107 ETWKGRLTPYYGGEEGTWLIARAEESLKKLALELTGKGYQQLTRAFFG-LFNLVLAPILV 165

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           FF       +   +     H     ++++   + + +    L   +  +  G++   A +
Sbjct: 166 FFMLYYKDFVKDLVLRFVPHRERPSFREMGGRIKRSLERFVLAQLLDCVIVGILSALALY 225

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPI--SFTAVSIYLLIKGNI-FNATCLFLWGAIELFI 291
             G+   +  G++    +++P    +        I     G++         +  I + I
Sbjct: 226 AIGIEFPLLNGLVAGFASVVPFVGVMVAVIPPALIGYAETGDMSVIPLVCAAYFVISVII 285

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
               ++P L+ G ++L  L   F L+     MG  G
Sbjct: 286 EGNLIKPLLMRGTLRLNPLAVIFVLMAMGELMGFWG 321


>gi|19746066|ref|NP_607202.1| hypothetical protein spyM18_1078 [Streptococcus pyogenes MGAS8232]
 gi|50914183|ref|YP_060155.1| hypothetical protein M6_Spy0837 [Streptococcus pyogenes MGAS10394]
 gi|139473790|ref|YP_001128506.1| hypothetical protein SpyM50949 [Streptococcus pyogenes str.
           Manfredo]
 gi|306827377|ref|ZP_07460664.1| possible permease [Streptococcus pyogenes ATCC 10782]
 gi|19748236|gb|AAL97701.1| hypothetical protein spyM18_1078 [Streptococcus pyogenes MGAS8232]
 gi|50903257|gb|AAT86972.1| Hypothetical membrane spanning protein [Streptococcus pyogenes
           MGAS10394]
 gi|134272037|emb|CAM30276.1| putative membrane protein [Streptococcus pyogenes str. Manfredo]
 gi|304430524|gb|EFM33546.1| possible permease [Streptococcus pyogenes ATCC 10782]
          Length = 382

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 112/296 (37%), Gaps = 8/296 (2%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           I  +     F + + ++    + ++   +S +   +   I     ++++      +    
Sbjct: 87  ICLLLAYLTFFILITWIISIVIPDLITSISTLTKFDTITIQ--EVVNNLEHNKLLARTIQ 144

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL--DYCLSIIFMIIALFFFYRDGF 182
            ++     L      + +     F+    +    + +     +++    +   +      
Sbjct: 145 -YIGGDGKLTETIANYSQQLLKQFLTVLTNILTSVTVIASAIINLFISFVFSLYVLASKE 203

Query: 183 SISQQLDSLGEHLFPAYWKKI---SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            + +Q ++L +     Y K+I     ++ +     F+  T+ A+  G +  S  ++  +P
Sbjct: 204 DLCRQGNTLVDTYTGKYAKRIHYLLELLHQRFHGFFVSQTLEAMILGSLTASGMFILRLP 263

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               +GV+ A  A+IP        A+   L++  ++  A    ++  I   I    + P 
Sbjct: 264 FAGTIGVLVAFTALIPVIGASIGAAIGFILIMTQSMSQAIIFIIFLIILQQIEGNFIYPK 323

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +VGG I LP +     +  G    G++G+     L A +  + K++I   +  ++K
Sbjct: 324 VVGGSIGLPAMWVLMAITIGASLKGIVGMITAVPLAATLYQVIKDNIQKRQAIQKK 379


>gi|313891995|ref|ZP_07825596.1| putative membrane protein [Dialister microaerophilus UPII 345-E]
 gi|313119638|gb|EFR42829.1| putative membrane protein [Dialister microaerophilus UPII 345-E]
          Length = 347

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/333 (13%), Positives = 122/333 (36%), Gaps = 2/333 (0%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +R  I+  + + L+F      P   +L +     P+ + FI K              S++
Sbjct: 9   LRVTIVVFLGILLFFAPVVVFPFGISLFLAILLNPL-AKFIQKNILKLKIKWFPYDFSII 67

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
             FIV +  ++  G+      ++++    +        L  +   +  +   +      +
Sbjct: 68  ISFIVFITIVYSIGVHIFVPFINELRAFIKSVPDTLNALQQLMMSLEKNYSLSLLPPEVK 127

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           ++       +    +  + +F+           L +I +    F+F + G        SL
Sbjct: 128 TVIARVIQNIGEYTLK-LAQFSISAVFSVASTLLELIVVPFITFYFMKKGRVFKDLFISL 186

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +      +   +  V+ +   G  +++    + +     +  +P  + +G++  ++
Sbjct: 187 FPERYSNRLNILFSEIYNVLHAYIRGQLLLSAIMTIFVCIGMSMFDIPYPLVIGLLAGVL 246

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            MIP   PI      I L +      A  + ++      +    + P L+G  IK+  + 
Sbjct: 247 EMIPIVGPIIGALPPIVLGLLQGTSTAIQVTIFYIFVQQLDAHLIMPKLMGSIIKVHPIV 306

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              G++ G +  G++G+ +    +A++ ++ + 
Sbjct: 307 IIAGVLIGGQLYGVIGMMVSVPFIAVLQIVLRH 339


>gi|282899240|ref|ZP_06307213.1| protein of unknown function UPF0118 [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195876|gb|EFA70800.1| protein of unknown function UPF0118 [Cylindrospermopsis raciborskii
           CS-505]
          Length = 359

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/341 (14%), Positives = 122/341 (35%), Gaps = 15/341 (4%)

Query: 10  GIMRWMIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
            + +W+ +  ++VSLY L   +     + +A+++  T   + +               ++
Sbjct: 2   KLGQWIGLIALVVSLYILWQLREVLLLIFAAVVLATTLNRL-ARTCQNLGIKRGLAVFLS 60

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +  +   +     +    + + +EL  +V    +    V  W+ +        +     
Sbjct: 61  VMFFLVGIVAFFWVIVPPFVHQFQELTLRVPQGFER---VNTWVDE--QRSHIPQELEPV 115

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +     L   ++  +     + +   +  F    L   L+I+ +++    F  +  +  +
Sbjct: 116 IPDLNRLIAEAQPLI-----NRVLGNSFAFVSGSLVLVLNILLVLVLTAMFLTNPAAYQK 170

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
               L    +    + I       +     G  I     GL+      + GV + +ALGV
Sbjct: 171 LFVRLFPSFYRRRVEGILNQCEDSLERWLTGAFIAVCVVGLMSLIGLSILGVKAALALGV 230

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +  +M +IP   P      ++ + +  + +    + +       I    + P ++   + 
Sbjct: 231 LAGLMNLIPNLGPTMSVVPAMAIALLDSPWKPIFVLILYFFIQQIESNFITPMVMAHQVS 290

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           L    T    +  V   G LGLF+  + + ++A IW + ++
Sbjct: 291 LLPAVTLISQLFFVTFFGFLGLFLA-LPLTVVAKIWIQEVL 330


>gi|75907179|ref|YP_321475.1| hypothetical protein Ava_0956 [Anabaena variabilis ATCC 29413]
 gi|75700904|gb|ABA20580.1| Protein of unknown function UPF0118 [Anabaena variabilis ATCC
           29413]
          Length = 367

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/321 (15%), Positives = 111/321 (34%), Gaps = 15/321 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           ++     + K      + A+++ F   +P+ S  + K+         +  V  + + I  
Sbjct: 27  LVFAFFQYFKPLVTIFVLAILLAFVLNYPVSS--LQKRGIKRGNAVGLVFVLTVIILIAS 84

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
            + L    + +  E+   + L         + L+D   G        + L+         
Sbjct: 85  GVTLLPIAIEQFHEIAKVLPLWIDSSQEKLQNLNDWAVGQHFKLNIGQILTRIIDKIPDE 144

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              +       I                  I  ++  F+   DG  I + +    + L  
Sbjct: 145 LESVSNQTFKIIVETVDSISEA--------IVTVVITFYLLVDGQRIWEGI---FKKLPI 193

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
           +  +K+++ + K  ++  +G   +A+  G      +    V   +  G+    +++IP G
Sbjct: 194 SLAQKLNQSIQKNFQNYLIGQGTLALLMGTSQTLLFLAFQVQFGLLFGLGVGFLSLIPFG 253

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
             +    V   ++   + + A  +     +   I+D+ + P L+G    L  +     L+
Sbjct: 254 D-VVSLIVITLIVATHDFWLALKILAVAVVIDQIIDQAIAPRLLGSFTGLRPIWVLVSLL 312

Query: 318 GGVRTMGLLGLFIGPVLMALI 338
            G    GLLGL I   +  LI
Sbjct: 313 VGTYIGGLLGLLIAVPVAGLI 333


>gi|237735950|ref|ZP_04566431.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229381695|gb|EEO31786.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 365

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/330 (15%), Positives = 108/330 (32%), Gaps = 17/330 (5%)

Query: 33  PVLSALIIGFTSWPIYSSFISKK---------EESSTFLAVIATVSVMCLFIVPLLFLFY 83
           P++   ++ +   P+                 +       ++ +++V+ + I+ L +L  
Sbjct: 40  PIIIGGVLAYFLEPLVQMVTKLFENCQSSFLKKHRRVLSVLLVSLAVILMIILLLTWLIP 99

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             M    E    +         V  + + I        L    +   Q+     ++    
Sbjct: 100 MVMDYAVEFAKNIDT------YVKSFEASINSSFEDPNLAGTIIQVEQTFVDSIKSLSAN 153

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           + ++ I  FA + G   L   + +IF    L    +      + +               
Sbjct: 154 DFMEVIA-FAGKTGSTLLTILMGLIFCPYILIEAEKLARIFDRFMLCFISQENLNLIHGY 212

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISF 262
           +    ++  +   G  I ++  GL+    + L G+P    L  +  I  MIP  G  I  
Sbjct: 213 AIKSHRIFGNFIYGKFIDSVIIGLIALVGFGLMGLPFFPLLAFVVFITNMIPYFGPFIGG 272

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             V   +L+   I  A    L+           L P ++G  + +        +      
Sbjct: 273 VPVVFIVLLTNGIMPAIWTALFIFALQQFDGLILGPRILGDSVGISPFWIICSITIFGSL 332

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            G LG+F+G  L+ +I + + + +   K  
Sbjct: 333 FGFLGMFLGVPLICVIRMFFNDFLEYRKNR 362


>gi|331087276|ref|ZP_08336346.1| hypothetical protein HMPREF0987_02649 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408962|gb|EGG88423.1| hypothetical protein HMPREF0987_02649 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 397

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 100/294 (34%), Gaps = 5/294 (1%)

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMWASELWT 124
           + V  + L +  +  + +    ++ + +  +  + Q  IP    W  D+         W 
Sbjct: 86  SLVLSIMLVLGIIFVVIFVVFPQLGKTILMLGESIQVFIPKLELWAEDLFQNNTGIIEWI 145

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           + +       I        NG   +           +    +     +   +       +
Sbjct: 146 ETMEFDWDKMIQGGIDFLRNGAGSVLNTTFAAAKSIVSGLTTFFISAVFACYILLQKKKL 205

Query: 185 SQQLDSLGEHLFPAYWK----KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           + Q+  +     P         I  +  +   +   G  + A+  G +   +  +  +P 
Sbjct: 206 TVQIQKVLYAFLPEKKVSTVLDICSLTYRTFSNFLTGQCMEAVILGTMFFISMSILKMPY 265

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + +GV+ A  A+IP         +  +L++  N   A    +   +   +    + P +
Sbjct: 266 ALLIGVLIAFTALIPIFGAFIGCVIGTFLILMVNPMQAIGFIVLFLVLQQVEGNLIYPHV 325

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           VGG + LP +     +  G   MGL+G+ I   ++++I  +++  +      K 
Sbjct: 326 VGGSVGLPSMWVLVAVSLGGSLMGLVGMLIFIPMVSVIYTLFRGYVYERLRKKN 379


>gi|317125914|ref|YP_004100026.1| hypothetical protein Intca_2798 [Intrasporangium calvum DSM 43043]
 gi|315590002|gb|ADU49299.1| protein of unknown function UPF0118 [Intrasporangium calvum DSM
           43043]
          Length = 419

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/329 (14%), Positives = 104/329 (31%), Gaps = 29/329 (8%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
              ++ A +      P  +      +        I     +      +         ++ 
Sbjct: 71  IFTLILAFLASIAMEPAVARLSQSMQ--RGLATAIVMFGSLLALAAFIFVFGRLLSDQIG 128

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
                V          P  + D+    WASE +   L + + L  L        G   + 
Sbjct: 129 TFAESV----------PALVEDL--TKWASERFGIDLDYQKLLDRL------GVGTSTLT 170

Query: 151 RFASRFGMIFLDYCLSIIFMIIALF-------FFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             A       L + LS++    +         +F  DG  + + +  L        +   
Sbjct: 171 TVAQNLAGGVLGFLLSVVAAAFSTLTFAFFAFYFSADGPRLRRWIGQLVPQRQQEVFGLA 230

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA-MIP-GGAPIS 261
             +  +          ++A   G +  +   + G+P  +ALG+ T ++A  +P  G  I+
Sbjct: 231 WDLAVRKTGGYVSARVVLAAINGGLTAAFMLVIGMPYWLALGIWTGVVAQFVPTVGTYIA 290

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
                +  LI    +    +  +  +   I + TL P +    + +    +F  ++ G  
Sbjct: 291 IALPVVIGLIGDQPWQGLAVLAFAVVYQQIENVTLEPRISASAVNVHPAVSFGAVLFGAS 350

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             G+ G F+   + AL+  ++       +
Sbjct: 351 LFGIGGAFVAVPVAALLLALFDIYSHKYE 379


>gi|326803654|ref|YP_004321472.1| hypothetical protein HMPREF9243_1249 [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651429|gb|AEA01612.1| putative membrane protein [Aerococcus urinae ACS-120-V-Col10a]
          Length = 388

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/336 (12%), Positives = 106/336 (31%), Gaps = 7/336 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPI---YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            +  F      A I+      I      F   K    T   +   +S++ + ++    +F
Sbjct: 40  VISPFLVGAAIAFILSIPVNYIEKYLKRFDYFKRHRKTLRGLAIVLSLILIVLLIYFLIF 99

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                    + S + +       V   +            + + L    +          
Sbjct: 100 LVLPDFEDTITSFISIVPTTISQVISKVMRFIDRHPELVTYIQQLDINLNNLAQRAIAFV 159

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            +    +       G+  ++   ++   ++          ++++Q+  +   +    W  
Sbjct: 160 QSLATNLLSQTFTIGIGLVNSLFNLFISLVFGITVVSAKETLTRQVKKVIYAICNLPWAN 219

Query: 203 IS----RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
                 ++   V  +   G  + A   G+++     +   P  + + VI     +IP   
Sbjct: 220 YLVNVGKLANDVFTNFVSGQVLEAFILGIMVYIGMLICHFPYALTISVIMGASGLIPIFG 279

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            I        L++  +   A    ++  +   +    + P +VGG + LP L T   +  
Sbjct: 280 AIFGAVAGAMLIVVTSPTKAILFIIFITVVQQLEGNIIYPRVVGGSVGLPGLWTLVAVTV 339

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G    GL G+ +    +++I  +   +I    + KE
Sbjct: 340 GGAFFGLPGMLLSVPTVSVIYQLTAATINHRLDLKE 375


>gi|283783584|ref|YP_003374338.1| hypothetical protein HMPREF0424_1139 [Gardnerella vaginalis 409-05]
 gi|298252961|ref|ZP_06976755.1| permease of the PurR regulon [Gardnerella vaginalis 5-1]
 gi|283441589|gb|ADB14055.1| putative membrane protein [Gardnerella vaginalis 409-05]
 gi|297533325|gb|EFH72209.1| permease of the PurR regulon [Gardnerella vaginalis 5-1]
          Length = 526

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/341 (10%), Positives = 106/341 (31%), Gaps = 19/341 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGF----TSWPIYSSFISKKEESSTFLAV 64
           + ++   I+  + + L+F     + ++  ++I         P+    I          + 
Sbjct: 45  RALIYVAIITFVSIFLWFAWNSISFIVFDVVISIFIALAMEPLVVRLIKH-GWRRGVASG 103

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
                ++ +  + L         ++  +V  +                     +      
Sbjct: 104 FTLTGLLVVISLLLALFGNLFAQQVVSMVMGLPDLYNQ------------FANFVLHYTG 151

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             + + + L +     ++T+ +      A       +   L ++ +I+  ++    G ++
Sbjct: 152 FKMPNIEQLGMEILKHVQTSWVVDFAGQALNTTWGLMTVLLDLLTIIMVTYYISAAGPAM 211

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + +           +  I  +V + I S      I+A    +       +  +P  + L
Sbjct: 212 RRSMCRWMNPQSQRRFLFIWSVVQEQISSFLFSRIILAAINAVGTAIFLIVMNIPYWLPL 271

Query: 245 GVITAIMA-MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            +   I++  +P  G  +      +          A    ++  I   I +  + P +  
Sbjct: 272 SLFCGIVSQFVPTIGGYLGGALPILVAWGSNGFGAAVATLIFITIYQQIENMVISPKISE 331

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             + L     F  ++      G LG F+   + A +  I++
Sbjct: 332 KTMDLNPAVAFISVLVMGAVFGALGAFLALPVTASLQAIFR 372


>gi|220909201|ref|YP_002484512.1| hypothetical protein Cyan7425_3833 [Cyanothece sp. PCC 7425]
 gi|219865812|gb|ACL46151.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7425]
          Length = 364

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/340 (17%), Positives = 127/340 (37%), Gaps = 18/340 (5%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           ++L   YF +     ++ A ++ F     +     +       LA++   +++ L +V +
Sbjct: 30  LLLFFEYFREP-ITILIVAAVLAFLLDHPFRWLEQRGVGRGLALAMVLGSALLLLMLVGI 88

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
             L              +  A+Q  +    W+      + +  LW  +   P +L   S 
Sbjct: 89  TLLPVL-----------IHQAHQLALASGDWIHSGKQQLVSLNLWLGNQGIPLNLINPST 137

Query: 139 TFLK--TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                 ++ +  +        +  +      +   I   +    G  + Q + +    L 
Sbjct: 138 LLTGHFSDQLQTLLSHLPNLIVRTVGGLFEGVLTAIITIYLLIKGEVLWQGILTW---LP 194

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
           P   ++    +P   R+ F+G   +A+  G  L  A+ L  +P  +  GV   +MA+ P 
Sbjct: 195 PKLARQTRTTLPCSFRNYFIGQGTLALLLGTALVIAFLLVQIPFGLLFGVFIGLMALFPF 254

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           G  IS T V++ + +K +      +     +   IV+  + P L+G   ++  +     L
Sbjct: 255 GGAISITLVTLIVALK-SFSLGLTVLAIATVVDQIVENGIAPRLLGHLTRVHPVWVILTL 313

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           + G    G+LG+ +   L + I  + +        N+ +I
Sbjct: 314 LIGGHIAGVLGVILAVPLASFIKDVVEVYRPQSGVNQTRI 353


>gi|192292736|ref|YP_001993341.1| hypothetical protein Rpal_4370 [Rhodopseudomonas palustris TIE-1]
 gi|192286485|gb|ACF02866.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           TIE-1]
          Length = 652

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 61/355 (17%), Positives = 122/355 (34%), Gaps = 30/355 (8%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            ++  II+ +LY  +  F PV  A+++ F      +   S +   +  +A I TV     
Sbjct: 22  TILAVIIISALYVGREVFVPVALAILLSFVLARPVNFLQSLRVPRA--IAAITTVLFAFA 79

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS----DIPGGMWASELWTKHLSH 129
            I  L  L    +  + + + +     Q  I   R ++     +       +  +K L+ 
Sbjct: 80  VIFALGSLIATQLSRLADDLPQYQSTIQSKITSLRGVTGGSTTLERAEGMLQNLSKELNK 139

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGM---IFLDYCLSIIFMIIALFFFYRDG----- 181
           P++    S +   T     +              L    S+I  +I+       G     
Sbjct: 140 PKNAPAPSLSNPPTTSSRPVTPVPVEVLQPDPGTLANLRSLIAPLISP--LATTGIIVIF 197

Query: 182 --------FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
                     +  +L  L                   +   FL   +I  G G+++G+  
Sbjct: 198 VIFILLQREDLRNRLIRLAGTRDLQRTTAALDDAASRLSRLFLNQLLINSGFGVLIGTGL 257

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
           W+ GVPS    G++ A++  +P    I   A  + L +  +   +  + +W AI  F+++
Sbjct: 258 WIIGVPSPALWGILAAVLRFVPYIGSIISAAFPLTLAVAVDPGWS--MLVWTAILFFVIE 315

Query: 294 ----KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                 + P + G    L  +             G +GL +   L   + V+ + 
Sbjct: 316 PAIAHVVEPMVYGRSTGLSPVAVVISATFWTALWGPIGLVLATPLTVCLVVLGRH 370


>gi|288800743|ref|ZP_06406200.1| membrane protein [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332204|gb|EFC70685.1| membrane protein [Prevotella sp. oral taxon 299 str. F0039]
          Length = 366

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 62/377 (16%), Positives = 145/377 (38%), Gaps = 31/377 (8%)

Query: 1   MRETMLNPQGIMRWM-IMFIILVSLYF---LKGFFAPVLSALIIGFTSWP--------IY 48
           M E  +    ++RW+ I+  + +S +    L G   P   A +  +  +P        ++
Sbjct: 1   MIEQKITFDKLVRWVGIVAAVGLSCWIINSLSGVLLPFFIAWLFAYLLYPIVIFVQNKLH 60

Query: 49  SSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR 108
               +     +  L +I    V+ L I P++  F      +    ++    N+    +  
Sbjct: 61  VKIRALSIIIALLLVLIVIGGVVYLIIPPMINQFTKLGPIISSYAAQKGTVNEVTRYIQE 120

Query: 109 WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII 168
           W+++            + + H    K  ++T  KT  +  +     +   I +    S I
Sbjct: 121 WIAE----------HHQMIEHYFRSKEFTDTLQKT--LPQVFSVLGQTASIVISIVASFI 168

Query: 169 FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLV 228
            ++  +FF   D   +++    +    + ++W+ +++ V + + +   G  ++A+  G++
Sbjct: 169 TLLY-MFFILLDYEYLTENWIKIFPKKYRSFWEALAQDVERELNNYIRGQGMVALCMGIM 227

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG-----NIFNATCL-F 282
               + +   P  + LG++  I+ ++P     +    +   L+K      N +    L  
Sbjct: 228 FCIGFTIIDFPMAIGLGILIGILDLVPYLHSFAVIPTAFLALLKAADTGQNFWWVFGLAL 287

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L   +   I D  + P ++G  + L  +     L      +G +GL +   L  LI V W
Sbjct: 288 LVFMVVQIITDMVVVPKVMGKTMGLNPVILLLSLSIWGTLLGFIGLIVALPLTTLIIVYW 347

Query: 343 KESIMAIKENKEKISSN 359
           +  +    EN+  +  +
Sbjct: 348 QRYVTKEVENENNLKKD 364


>gi|284008475|emb|CBA74962.1| putative permease [Arsenophonus nasoniae]
          Length = 354

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 125/352 (35%), Gaps = 24/352 (6%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +PQ +  ++ + I    ++F     AP+L A+++ +   WP     + K   S  
Sbjct: 10  RRRFSDPQVVALFISLIIGFCIIFFFHDILAPLLVAIVLAYLLEWPTQK--LGKLGLSRL 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A I     M +  +  L +      +   L+            +P  ++       A 
Sbjct: 68  AAASIVLTIFMGISAMVFLIIVPIVWQQGMNLL----------FDLPSMVNSFNEYAKAL 117

Query: 121 ELWTKHLSHPQSLKILSETFLK--TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                 L     + ++++      +   + + +++    +  +   + ++ + + +FF  
Sbjct: 118 PERYPALVDAGIIDMIADNLRNRLSTLGESVVKYSVASLIGIITIAIYLVLVPLMVFFLL 177

Query: 179 RDGFSISQQLDSLGEH---LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           +D   + + L  +      L    W+++++ +   IR   + M I+    G+    A+  
Sbjct: 178 KDKTRMIRGLQRILPRDRLLVGQVWQEMNQQITNYIRGKVIEMMIV----GICTYIAFAF 233

Query: 236 AGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVD 293
            G+   + L V+  I  +IP  GA +    V +  L +  I      L +   I   +  
Sbjct: 234 LGLRYSLFLSVLVGISVLIPYIGAVVVTIPVVLVALFQWGIGPDFWTLLIAYLIVQGLDG 293

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             L P L    + L  L     +V      G  G+F    L  LI  +    
Sbjct: 294 NLLVPILFSEAVNLHPLVIILSVVVFGGLWGFWGVFFAIPLATLIKAVMHVW 345


>gi|257469202|ref|ZP_05633296.1| permease [Fusobacterium ulcerans ATCC 49185]
          Length = 376

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 59/329 (17%), Positives = 113/329 (34%), Gaps = 2/329 (0%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
           G+  P++ A+ I     P+ S    + +        I  V V+      +  +       
Sbjct: 39  GYLIPMIYAVFISIFLEPLVSKIEQRFKLERWVAVAIVIVLVIIGVAGFVGLILPQLGKS 98

Query: 89  MKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            KEL +K+     Q G  + R L  +           +   +  SL   +   L+  GI 
Sbjct: 99  FKELYNKLPHMQEQLGSLIKRVLDYLKEKELLVIGEKQIEDNIISLLKRNIGNLQEFGIS 158

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            +      + +    + +     +  L         I   L  +       Y        
Sbjct: 159 VLLNIV-WWTIALSKFFIGFFLAVFILLDKEYFIRFIKNILAIIFGKEKGMYLSDFLNQS 217

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
             V+ +   G  I +   G++     +LAGVP  +   ++  +  MIP    I   A++I
Sbjct: 218 RNVLLNYVWGRIIASAFVGVITFVVLFLAGVPYALLSSLMIGMGNMIPYVGSIVAGAIAI 277

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +L+I         LFL   I   +    + P +V   + +        ++ G   MG +G
Sbjct: 278 FLVILAEPSKIGYLFLAMIIGQTVDGWIVGPKIVSETVGMSTFWVIVAVLIGGSVMGPMG 337

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKEKI 356
           +F G     +I +I++  +  I+     I
Sbjct: 338 MFFGVPAFGIIKLIYETQLKKIENGSTNI 366


>gi|94268176|ref|ZP_01291111.1| Protein of unknown function UPF0118 [delta proteobacterium MLMS-1]
 gi|93451703|gb|EAT02478.1| Protein of unknown function UPF0118 [delta proteobacterium MLMS-1]
          Length = 309

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 70/219 (31%), Gaps = 3/219 (1%)

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 +   +    +  +   + ++ +   +FF  +D   I   +         A  + 
Sbjct: 89  GALGQHVLAISLASVVNIITLLVYLVLVPFLVFFLLKDKDLIMNWISLRLPRERGA-AQD 147

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
           + R +   + +   G     +  G +   ++ +  V   V L  +T +  ++P  GA + 
Sbjct: 148 LWRDLDAQMGNYVRGKFWEILIVGGITFISFTILRVDYAVLLATLTGLSVLVPYVGAVVV 207

Query: 262 FTAVSIYLLIKGNIFNATC-LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
              V +    +  + +    L +   I   +    L P L    + L  +     ++   
Sbjct: 208 TIPVLLVGYFQWGVGSELAWLLIAYGIIQTLDGNVLNPLLFAKAVNLHPVAIIGAILIFG 267

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              G  G+F    L  L+  +           +E+  + 
Sbjct: 268 GLWGFWGIFFAIPLATLVNALIITWPRNPDPEEEEAQAQ 306


>gi|271969818|ref|YP_003344014.1| permease-like protein [Streptosporangium roseum DSM 43021]
 gi|270512993|gb|ACZ91271.1| permease-like protein [Streptosporangium roseum DSM 43021]
          Length = 423

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/301 (15%), Positives = 111/301 (36%), Gaps = 14/301 (4%)

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS 111
           + K+  +      +  + V+ +F V  L +      +  + V K+          P+++ 
Sbjct: 136 LQKRGLARVVAITVVFLGVIAVFAVFGLAVVPPLTTQSTDFVEKL----------PQYVQ 185

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
           ++       +L  +     Q L+ L +     +    +      FG + +    + + ++
Sbjct: 186 ELQNNPMIRDLDQRF----QILEKLQQYVTSGDFGSQMFGGVLGFGQVLIGAVFNALTVL 241

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
           +   +F     S+ +    L           +   +   I     G  II++  G+    
Sbjct: 242 VLTLYFLGSLNSLKKMAYRLVPKSRRTRAGLLGDKIIDSIGGYVAGNLIISLIAGVTTFF 301

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
                 VP  +AL +I A+  +IP         V+  +    +        ++  +   +
Sbjct: 302 FLIAMKVPYALALALIVALTDLIPMVGAFIGAGVASLVGFFVSPTVGIICVIFFTVYQQV 361

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            +  + P ++   + +P L T  G + G   +G++G  +G  L+A + +I +E +M  +E
Sbjct: 362 ENYWIAPSVMKSSVDVPPLATIVGALVGGALLGVVGALLGIPLVAALLLIVREVVMPRQE 421

Query: 352 N 352
            
Sbjct: 422 Q 422


>gi|254517606|ref|ZP_05129662.1| sporulation integral membrane protein YtvI [Clostridium sp.
           7_2_43FAA]
 gi|226911355|gb|EEH96556.1| sporulation integral membrane protein YtvI [Clostridium sp.
           7_2_43FAA]
          Length = 357

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 63/346 (18%), Positives = 129/346 (37%), Gaps = 13/346 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGF----FAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
              + I+  + + I+   +Y    +    F P +    I F   P+ +S   K   +   
Sbjct: 5   KKREFIINTLYLLIVATIIYIAIKYGLGWFLPFVIGFGIAFILKPLINSISKKFGLNRKV 64

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG----- 116
           +A I  +         +  L     +E+K++   + L N +   +   +  +  G     
Sbjct: 65  VAGITVLIFYTTVGALITVLIVKLFVELKDVF--IKLPNLYTTTIEPVILQLSSGFEDIL 122

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
           +       + +    S    S   + ++    +  F S        + + +IF IIA FF
Sbjct: 123 IKLDPTLMQAIRDMISSLTESLGSIISSISSGVVVFISSTVTTVPTFFIIVIFSIIASFF 182

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
           F  D  +I+  +         +    +   +   +       +II     + L     + 
Sbjct: 183 FAMDYTNITTFITRQFSERASSIIFDVKDYIVGTLFKFIKAYSIIISVTFIELAIGLSIL 242

Query: 237 GVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
            V S + + ++ A + ++P  G         I  LI+G+I  A  L +   + + IV   
Sbjct: 243 RVESAITIALLIACVDVLPVLGTGGIVIPWIIIELIRGDIGLAVGLTIIY-VVITIVRNV 301

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           L P +VG  I L  +     +  GV+  G LGLF+ P+++ ++  +
Sbjct: 302 LEPKVVGQQIGLHPIVMLMCMFIGVKIFGFLGLFVLPIIVIILKNL 347


>gi|225017609|ref|ZP_03706801.1| hypothetical protein CLOSTMETH_01537 [Clostridium methylpentosum
           DSM 5476]
 gi|224949574|gb|EEG30783.1| hypothetical protein CLOSTMETH_01537 [Clostridium methylpentosum
           DSM 5476]
          Length = 360

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/351 (15%), Positives = 122/351 (34%), Gaps = 12/351 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLK-----GFFAPVLSALIIGFTSWPIYSSFISKK 55
           M       +  +   + FI++  + FL       +  P +    I F   PI     +K 
Sbjct: 1   MDGRTERRRSFIINAVYFILIFGIGFLLFKYAVPYVLPFIIGFAIAFMLKPIVRFLSTKL 60

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI-PVPRWLSDIP 114
             +  F   +  +    L  + L FL    +  + +L           I P+   ++   
Sbjct: 61  RLNHRFCGAVVILLAYALLALVLWFLGARLVSALTDLFGNAEQYFDIYIAPLLEKINSFT 120

Query: 115 G---GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
                + + +L  +     Q +    ++ + +   + +   A   G     + ++  F I
Sbjct: 121 VETISVLSPDLAPQANDLFQGVIQSLQSGIVSLSGNVVGSLA-NIGAKIPGFLVAFAFTI 179

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
           ++  F   D    +  L       +     ++       I        I+ I   + L  
Sbjct: 180 MSSIFISMDYNQFTSFLLRQLPKRWRDMAFEVKGYFVGTILRYLRAYLILMIITFVELSI 239

Query: 232 AYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
            + + G+ + + +  I A+   +P  G         +  L+KGN      L +   I + 
Sbjct: 240 GFGVIGIGNPIGVAAIIALCDALPVLGTGGIVIPWILLELLKGNYQLVIGLTV-VYIIVT 298

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +V   + P ++G  + L  + T   +  G + +G+ G+ + P+ + +I  +
Sbjct: 299 VVRNFIEPKVIGQQLGLHPIVTLVSIYIGFKLIGVAGMILFPIFVQIIVSL 349


>gi|254796579|ref|YP_003081415.1| permease, PerM family [Neorickettsia risticii str. Illinois]
 gi|254589824|gb|ACT69186.1| permease, PerM family [Neorickettsia risticii str. Illinois]
          Length = 327

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/326 (15%), Positives = 110/326 (33%), Gaps = 15/326 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
                 + I+ +      +   +    S    +++    +  L I+ L         ++ 
Sbjct: 2   LFAFAFSFILAYFLNRSTTKLAALI-GSRGIASLLVVTFLSILVILVLSLAIPLLYHQLI 60

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK--TNGIDF 148
             +             P+ ++ I   +  S          + +  L E  L         
Sbjct: 61  LFLKGA----------PQLIAYIENSIKTSSPGLHSFLEERGMSSLFEYLLSLVPQLSTK 110

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           I +      ++  +  + +IF  + LF+  +D   ++  +  +        +     ++ 
Sbjct: 111 ITQHLWNSTLVLANIVILLIFTPVILFYLLQDWPKMTNAIKEIIPLKHRTTFNNQVTLMD 170

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
             I    LG   I+   G++     + AG+P +  +GV T ++ +IP    I+    S  
Sbjct: 171 ASISGYVLGQMKISFILGVLYTVLLFFAGMPYYFLIGVSTGMLTIIPYFGNITGLITSHL 230

Query: 269 LLIK--GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           + +    +I +   + L       I    L P L+   + L  L   F +  G    GL 
Sbjct: 231 VALSRASSILDVLPITLIFIFCGAIEGMFLSPKLLSKSVNLHPLWVIFSMTVGGMLFGLA 290

Query: 327 GLFIGPVLMALIAVIWKESIMAIKEN 352
           G+ +   + A +A   +  I   K++
Sbjct: 291 GILLAVPVAATVAGFVRLGISYYKDS 316


>gi|86606622|ref|YP_475385.1| hypothetical protein CYA_1978 [Synechococcus sp. JA-3-3Ab]
 gi|86555164|gb|ABD00122.1| putative membrane protein [Synechococcus sp. JA-3-3Ab]
          Length = 378

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/320 (16%), Positives = 112/320 (35%), Gaps = 8/320 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + ++     V +A+++      +      +         +I  ++V+   I+  L +   
Sbjct: 20  WQIRQILLLVFAAIVLAVALDTLAQ-IPQRYGFRRGPSLLITGLTVLVGAILVGLIVVPP 78

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
              +++ L +  V A   GI   + L +       +++    L    +  +   T L   
Sbjct: 79  LADQLRRLFTDGVPA---GIVQAQRLFESLILSLPTDIELPTLRELANSLVPQATELVRQ 135

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
             DF           F    L+++F+II       D  + S+   S+    +    + I 
Sbjct: 136 VRDFFSES----FTAFFATLLNLLFVIILTILLLVDPQAYSRAFVSVFPAFYRPRVRYIL 191

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
           +     +R   +G+   +    L+ G   W+ GVP  +A  V+  +   IP   P     
Sbjct: 192 KRCELALRGWLVGILFTSSLVMLLSGIGLWILGVPLSLANAVLAGLFNFIPNIGPTLSVV 251

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             + + +    + +  +         +      P ++   + L    T    V      G
Sbjct: 252 APMLVALTDAPWKSLAVLGLYIFIQQLESSVFTPLVMSRQVSLLPALTLVAQVTSAFFFG 311

Query: 325 LLGLFIGPVLMALIAVIWKE 344
           +LGLF+   L A++ V  +E
Sbjct: 312 VLGLFLAVPLAAILQVWIQE 331


>gi|223940687|ref|ZP_03632527.1| protein of unknown function UPF0118 [bacterium Ellin514]
 gi|223890657|gb|EEF57178.1| protein of unknown function UPF0118 [bacterium Ellin514]
          Length = 360

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 103/305 (33%), Gaps = 20/305 (6%)

Query: 44  SWPIYSSFISK-KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH 102
             P++         +S+  LA  + +      +     L      +  E + K+    + 
Sbjct: 52  FRPLFRWTARHHWPKSAGILACGSILFCSTALV--FGLLVPAISKQGTEFIQKLPEFKER 109

Query: 103 GIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD 162
            +  P      P       L  +  S               + ++ + + A  +G + L+
Sbjct: 110 ILQSP------PASGVVRNLADRFFSASAY-----------SNLEPLLKKAVTWGGVGLE 152

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
                  ++I   +   +G  + + L +             +  + +V+    +G  I +
Sbjct: 153 RMAEFFLVLILSLYLIAEGDRVYRWLIAFLPEEQRRKTAAAAEEITEVVSQYVVGNIITS 212

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF 282
           +  G+   +   L  VP+   L V+  I  ++P      FT  ++ L +  ++  A  + 
Sbjct: 213 VICGIYAFTVLKLLHVPNAALLAVMAGIFDLLPIIGFFLFTIPAVLLALTVSVKAAMLVA 272

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +  +      +  + P + G  ++L  L      +      G++G+ +   ++A    I 
Sbjct: 273 ILYSAYHLAENYFIVPKVYGNRLRLSELTVLISCLAAGLIAGVIGVLLVLPIIASYPTIE 332

Query: 343 KESIM 347
           +  + 
Sbjct: 333 RIWLR 337


>gi|169631595|ref|YP_001705244.1| hypothetical protein MAB_4521c [Mycobacterium abscessus ATCC 19977]
 gi|169243562|emb|CAM64590.1| Conserved hypothetical protein [Mycobacterium abscessus]
          Length = 399

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/337 (14%), Positives = 109/337 (32%), Gaps = 16/337 (4%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
             +L   + LK    P+L AL+      P  +     K    +   V+  ++     +  
Sbjct: 32  LTVLWLFWHLKTITIPLLLALMGSALLVPTVNFLQRHKIPR-SLAVVVVLLTGTAAIVGI 90

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           L F+    +  + +L +++  +          +  +      S          ++   L 
Sbjct: 91  LTFVVDQFIKGLPDLSAQLTNS----------IESLKNWAIHSRFHISEDQIGKAGDALV 140

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            T     G   +   A        +     +  +    FF   G  I + +  +      
Sbjct: 141 NTIKDNQGR--VTSGALATATTVTEIITGAVLTLFTTIFFLYGGKEIWEFVTRIFPTAVR 198

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
              ++   +    +         +A+ + + +G       VP  + L  +  + A IP  
Sbjct: 199 PRVRRAGVLGFGSLIGYVRATVAVALVDAIGIGVGLAAFSVPLALPLASLVFLGAFIPII 258

Query: 258 APIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                 F AV I L+ KG    A  L +   + + +    L+P ++G  +++  L     
Sbjct: 259 GAAISGFVAVFIALITKGAFTAAMILVIV-IVVMQVEGHVLQPLIMGHAVQIHALAVVLA 317

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           +  G    G++G  +    +A++    +  I     +
Sbjct: 318 IAAGGVLGGIIGALLAVPTVAVLNTAIRALIEPFDAD 354


>gi|16331485|ref|NP_442213.1| hypothetical protein sll0063 [Synechocystis sp. PCC 6803]
 gi|8928467|sp|Q55147|Y063_SYNY3 RecName: Full=UPF0118 membrane protein sll0063
 gi|1001141|dbj|BAA10283.1| sll0063 [Synechocystis sp. PCC 6803]
          Length = 395

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 59/312 (18%), Positives = 118/312 (37%), Gaps = 22/312 (7%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           YF   F   +++++I    ++P+  +++ K+       A    ++ + +F    + L   
Sbjct: 53  YFESLFVISLIASVIAFLLNYPV--AWLEKQGAKRFVAASFVFLTALIIFTALGVTLIPL 110

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + + ++LV+++          P WL      +   +   + L  P +   L        
Sbjct: 111 ALSQAQQLVARL----------PDWLDSGQKQLVLLDQKAEILGWPVNFDGLIPQINSRL 160

Query: 145 GIDF------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             +           A    +  +   L ++  II  F+       + Q +       F  
Sbjct: 161 AAELQNLAGSTLNLALSLTVFTVVRLLDVLLTIILTFYLLLHTDDVWQSIIGWLPERF-- 218

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             K  S  + +  ++ FLG  + A    L L S + L  VP  +  G+   +MA+IP G 
Sbjct: 219 -QKPFSDTLRRSFQNYFLGQLVSATCMALGLISGFLLLKVPFGLLFGLTVGVMALIPFGG 277

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            +    V+ +L+   +I  A  L     +   IV+  + P ++G    L        L+ 
Sbjct: 278 SVGIVLVT-FLVALRDIGMALQLLAVALVIQQIVENGIAPRVLGSVTGLNPFWVLISLLT 336

Query: 319 GVRTMGLLGLFI 330
           G R  GLLG+ +
Sbjct: 337 GARIGGLLGVIV 348


>gi|326778235|ref|ZP_08237500.1| protein of unknown function UPF0118 [Streptomyces cf. griseus
           XylebKG-1]
 gi|326658568|gb|EGE43414.1| protein of unknown function UPF0118 [Streptomyces cf. griseus
           XylebKG-1]
          Length = 368

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 102/299 (34%), Gaps = 21/299 (7%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           P++   I++   + +  A +   +++ +       +    +    ++V  +  A Q    
Sbjct: 58  PVHRWLIAR-GLNRSLAAGLTCAALVAVVGGAGYIVVTALIDSGDQIVDSLKDAGQ---- 112

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
              W+           L     ++   L   ++  ++  G        S    +      
Sbjct: 113 ---WV--------VDHLDIAGATNVDDLADNAKGLVEKFGASAAGGLLSGI-SLVGSLVA 160

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           + +  ++  FFF RD         ++         + + R   + +     G T IA+ +
Sbjct: 161 TSVLALLLTFFFLRDSDRAVNLAHAVAPRGTGDLVEAMGRRAFEAVEGFMRGTTFIALID 220

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
            + +     +  VP  V LG +  + A IP        AV++ L+   +      L+  G
Sbjct: 221 AVCITVGLLILDVPGAVGLGALVFVGAYIPYLGAFISGAVAV-LVALADRGFVIALWALG 279

Query: 286 AI--ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            +     +    L+P +    +++        L  G    GLLG+ +  P+  A   V+
Sbjct: 280 VVLAVQVLEGHVLQPMIQSRTVQMHPAMIMIALTAGASVAGLLGMLLAVPLCAAAFGVL 338


>gi|300811539|ref|ZP_07092028.1| putative membrane protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300497479|gb|EFK32512.1| putative membrane protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 357

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/354 (14%), Positives = 115/354 (32%), Gaps = 27/354 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE-SSTFLAV 64
            N   + R  ++ +I+++LY+++     +L   I  +    +      K +  S   +  
Sbjct: 10  KNNIHLRRATVLVMIILALYYVRTMMNTILLTFIFTYLIVHLVRFVQGKFKHVSDKLIVA 69

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  + ++ L    L +     + ++ ++   V+   Q                     W 
Sbjct: 70  LTYLLIVVLLYFALRYYVPVLVKQVTKMTKSVINYYQTN----------------DVGWL 113

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
               H    +    + +K++               F    +S +  ++  FF+  +   +
Sbjct: 114 MTQLHKYVSEKTISSQVKSSLTALTAAL-----KGFGSVTMSFVMALVLSFFYTIELKEM 168

Query: 185 SQQLDSLGEH----LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                S  +               R              +IAI    +      +  +P 
Sbjct: 169 QTFSQSFLKSDLFGWLFEDIAYFGRKFTNTFGVVLEAQFLIAICNTALTIVCLAIMKMPQ 228

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             ALG++  I +++P  G  IS   +S+     G I +   + +  A+   +    L P 
Sbjct: 229 IFALGLMVFICSLVPVAGVIISLIPLSLVAYTVGGIQDVIYILIMIAVLHTLETYILNPK 288

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            +    +LP   TF  L+ G    G+ GL +   +      I     +  K+ K
Sbjct: 289 FMSSKTELPIFYTFVVLLFGEHFFGIWGLIVSVPIFTFFLDILGVKNINSKQEK 342


>gi|253997933|ref|YP_003049996.1| hypothetical protein Msip34_0220 [Methylovorus sp. SIP3-4]
 gi|313199998|ref|YP_004038656.1| hypothetical protein MPQ_0231 [Methylovorus sp. MP688]
 gi|253984612|gb|ACT49469.1| protein of unknown function UPF0118 [Methylovorus sp. SIP3-4]
 gi|312439314|gb|ADQ83420.1| conserved hypothetical protein [Methylovorus sp. MP688]
          Length = 359

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 60/327 (18%), Positives = 123/327 (37%), Gaps = 11/327 (3%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
              AP L A I  +   P+       +    T    +A++ VM +    L+ +    +L 
Sbjct: 30  PIMAPFLIAAIFAYICNPLVDRLAQVRLWQFTLGRTVASLLVMLM----LIAIICILLLI 85

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           +  ++ K  +     +P            W  + +   +    +      +    +  DF
Sbjct: 86  VIPMMQKEFMLIMEKLPTYITGLRTRIEPWLLQHFGVAIDIDAAKVQQVISSNWKSASDF 145

Query: 149 IPRFASRF---GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           + +F       G+    +  +++ + I LF+  RD   I  + D L    + A   +I+R
Sbjct: 146 VGKFLLALSDHGLALFAWLANLVLIPIVLFYLLRDWHDILNRFDQLLPRRWYAKTVEIAR 205

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP---GGAPISF 262
            V  ++     G   + +       +  WL+G+   + +G+I  ++  +P    G  +  
Sbjct: 206 EVDMMLAEFLRGQLSVMLLMSAFYATGLWLSGLELALPIGLIAGLLGFVPYLGIGTGMLL 265

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
            A++  L           + ++G I   +    L P+LVG  I L  +   F L+ G + 
Sbjct: 266 AALASVLQFTTFAQYVPVIAVFG-IGQMLESMWLTPWLVGDRIGLHPVMVIFALLAGGQL 324

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAI 349
            G  G+ +   + A IAV  + +  A 
Sbjct: 325 FGFTGILLALPVSAAIAVGLRHAKRAY 351


>gi|298209195|ref|YP_003717374.1| permease [Croceibacter atlanticus HTCC2559]
 gi|83849122|gb|EAP86991.1| permease [Croceibacter atlanticus HTCC2559]
          Length = 362

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 56/335 (16%), Positives = 123/335 (36%), Gaps = 18/335 (5%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + ++     +  A ++     P    F+  K +    +AVI  + +     + L+ LF  
Sbjct: 28  WEIQSVIIYIGIAAVLSLIGRPA-VLFMRHKLKLPNLVAVIIVLVIFLSIFIGLILLFVP 86

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            ++E           N   I +  + +D+         +                F+K  
Sbjct: 87  IIVE--------QSQNLSQIDIDAFRTDLNDLNRQINEFLGVNQINIVEGFKQSDFVKNF 138

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            I  +P+F +          + +  +I   FF  +D   +   + +         +K++ 
Sbjct: 139 EITSVPKFLNNVFGSLGSGLIGLFSIIFISFFLLKDSKLLLNSVLAFSNRGDEDRFKRVF 198

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
             +  ++   F+G+T       L+        G+ + +A+  I A + +IP   P     
Sbjct: 199 HTIKILLSRYFVGLTFQITILFLLYAIILMSFGIDNAIAIAFICAFLNLIPYLGPTIAGV 258

Query: 265 VSIYLLIK---GNIFNATC---LFLWGAIELF--IVDKTL-RPFLVGGPIKLPFLPTFFG 315
           + +  +I    G+ F+A     L   G++ +   I+D  + +P + G  ++   L  F  
Sbjct: 259 LMMMFVISSNLGSNFSAIILPKLIKVGSLYIACQILDNFIFQPLIFGKSVRSHPLEIFLV 318

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++      G+LG+ +       + VI KES+   K
Sbjct: 319 ILIAGLVFGVLGMVVAVPAYTALKVIAKESLGEYK 353


>gi|254450657|ref|ZP_05064094.1| membrane protein [Octadecabacter antarcticus 238]
 gi|198265063|gb|EDY89333.1| membrane protein [Octadecabacter antarcticus 238]
          Length = 350

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 119/337 (35%), Gaps = 21/337 (6%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P +   +I +   PI      K   S     V+ T+S + +F +  L +    + ++ 
Sbjct: 5   LTPFILGSVIAYFLDPIADRLE-KWGLSRVMATVVITLSGVLIFFLLFLLVVPTLIGQLG 63

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           +L+S +    Q        L +   G + +       +            +++ G D + 
Sbjct: 64  QLISTIGEIIQDLPQTWVSLKEWLSGRFPN--LDLDGTFMLDQMTSLGNAVQSRGGDLVA 121

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              S      ++  + ++ + +  F+   D   +  Q+D+L         + ++R + + 
Sbjct: 122 ALLSS-AQGLINVVVLLVIVPVVTFYMLMDWDRMVAQVDNLLPRDHQETVRDLARQIDRT 180

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS----FTAVS 266
           + S   G   + +  G     A  LAG+   + +G I  +++ IP    +        ++
Sbjct: 181 LASFIRGQGTVCVILGTYYAVALMLAGLNFGLIVGFIAGLISFIPYIGALVGGVLAIGLA 240

Query: 267 IYLLIKG-------------NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           ++    G             N    + +    A   F     L P LVG  + L  +   
Sbjct: 241 LFQWWGGTEVIDGETVQHSINWLRISIVAGVFAFGQFFEGNILTPKLVGNSVGLHPVWLI 300

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             L      +G +G+ +   + A+I V+ +  I   K
Sbjct: 301 LALSVFGSLLGFVGMLVAVPVAAVIGVVARFLIAEYK 337


>gi|153814163|ref|ZP_01966831.1| hypothetical protein RUMTOR_00372 [Ruminococcus torques ATCC 27756]
 gi|317499961|ref|ZP_07958197.1| hypothetical protein HMPREF1026_00139 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087816|ref|ZP_08336741.1| sporulation integral membrane protein YtvI [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|145848559|gb|EDK25477.1| hypothetical protein RUMTOR_00372 [Ruminococcus torques ATCC 27756]
 gi|316898678|gb|EFV20713.1| hypothetical protein HMPREF1026_00139 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330409511|gb|EGG88952.1| sporulation integral membrane protein YtvI [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 384

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/329 (15%), Positives = 104/329 (31%), Gaps = 8/329 (2%)

Query: 9   QGIMRWMIMFIILVSLYFL----KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           Q  +R +       +   +     GF  P +   II   + P+ +    +        + 
Sbjct: 9   QVGIRLLFSLAATAAFVIIGIKAIGFLMPFVIGWIISAVAAPLVNWLEKRLRIVKKLGSA 68

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG--MWASEL 122
           +  + V+   +  L       +LE+  LV                + D   G      E+
Sbjct: 69  LIVILVLGGIVGILYLGISRLILEVASLVRDFPSIYAQLESGLSQIGDTLSGVFDRLPEV 128

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                +   S        + +   +     A         Y +S +  I++ +FF     
Sbjct: 129 VQNGWNTVASNLDQYMGKVVSGISEPTVSAAGNIAKRVPYYLVSFVVAIMSAYFFIVQRE 188

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +   L  +           +S  +   +   F     I     L+L +     G+   V
Sbjct: 189 DVLAWLKKVAPVSVQKRMTLVSDNLKYALGGYFKAQFKIMGVVFLILAAGLGFMGIGYFV 248

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            +  + + +  +P  G   +    ++Y    G+      L +   I   +V + L+P +V
Sbjct: 249 LVAFLISFLDFLPFFGTGTAMIPWAVYQFFMGDYKMTVSLVVLYVITQ-VVRQLLQPKMV 307

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           G  + L  L T   L  G +  GLL + +
Sbjct: 308 GDSVGLNPLVTLLLLYVGYKAGGLLWMIL 336


>gi|328956536|ref|YP_004373922.1| UPF0118 membrane protein YueF [Carnobacterium sp. 17-4]
 gi|328672860|gb|AEB28906.1| UPF0118 membrane protein YueF [Carnobacterium sp. 17-4]
          Length = 343

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/311 (15%), Positives = 110/311 (35%), Gaps = 7/311 (2%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F PVLSA  + +   P+    + K +   ++  ++     +    + ++  F   M ++ 
Sbjct: 26  FIPVLSAGFLFYLLNPL-IKVMQKLKIKRSYAIILVMFLFLGGATIFIIKTFPILMHQLS 84

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           +LV+           +             S      L    +   LS        +    
Sbjct: 85  DLVANSPAI------LSDIEIQTKDIALLSPFNNVDLDETLNQLNLSLDAFSKTILSSFT 138

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              S       +  + +I + I LF+ + DG  +   +  L    +  +  ++      V
Sbjct: 139 TSISSIVGAIANLTIVLITVPIVLFYMFHDGEKLQLAVTHLFPIRYQKHVFELLHQTNLV 198

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           I +   G  + +I   +++   + + G+P  + L ++     +IP   P      +I + 
Sbjct: 199 ITAYISGKGLASIVVAVLMYFGFLIIGLPYTLLLAIVNGFTNLIPYIGPFIGAVPAIIVA 258

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +  +   A  + L   +   +    L P  VG  + +  L     L+   + +G++G+  
Sbjct: 259 LTISPTTALLVALIVLVVQQLDANFLTPKFVGKSLAIHPLTIIIILLVAGKMLGIIGIIF 318

Query: 331 GPVLMALIAVI 341
           G    A+I  I
Sbjct: 319 GVPAFAVIKTI 329


>gi|319782650|ref|YP_004142126.1| hypothetical protein Mesci_2946 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168538|gb|ADV12076.1| protein of unknown function UPF0118 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 661

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/345 (15%), Positives = 113/345 (32%), Gaps = 22/345 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +   + +LYF +  F P+  AL++ F   P+ ++   KK       AVIA+V        
Sbjct: 36  IVTTVAALYFGREVFLPIAIALLLTFALAPLVAAL--KKLGIPRIAAVIASVLGAFAA-- 91

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L    +    ++ EL   + +   + +   R L +   G       +K +         
Sbjct: 92  -LGLFSFIVATQVSELAQNIPVYQTNILTKIRSLKETGVGGGILARLSKVVERVGQEIDR 150

Query: 137 SETFLKTNGIDFIPR---------------FASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            +  L     +  PR                        +    S   +I+ + F   + 
Sbjct: 151 QDPSLPVATPEKPPREPVPVEIVAHERPLQVLQNVVGPLISPLGSAGLIIVVVIFMLLER 210

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +  +   L  +       +  +   K +    L   ++ I   + +    W  G+P+ 
Sbjct: 211 EDLRDRFIRLVGYGDLHRTTEALQDAAKRVGRYLLMQLVVNIVYAIPIAIGLWALGIPNA 270

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF--IVDKTLRPF 299
           +  G++   +  +P   PI    + ++L +      +  L+      +   I    + P+
Sbjct: 271 LLWGLLALALRFVPYIGPIIGMLLPLFLALAVAPGWSLVLWTAALFVVMELITGNVIEPW 330

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L G    L  L      +      G LGL +   L   + V+ + 
Sbjct: 331 LYGSRTGLSPLAIIVAAIFWTWLWGPLGLILSTPLTVCLVVLGRH 375


>gi|218295848|ref|ZP_03496628.1| protein of unknown function UPF0118 [Thermus aquaticus Y51MC23]
 gi|218243586|gb|EED10114.1| protein of unknown function UPF0118 [Thermus aquaticus Y51MC23]
          Length = 365

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 92/295 (31%), Gaps = 14/295 (4%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           +L+A    + + P+   F +++         +  V V     + L    +     + EL 
Sbjct: 40  LLTAFAFAYLAHPLVRFFEARRLPR-----ALGVVLVYLGLGLFLGLASFLTAQTVVELS 94

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI---- 149
                  +   P   WL  +P  + A  +               +  L+      +    
Sbjct: 95  RLAQELPRLLDPFLAWLLSLPDRVRAVPVPESLKPILAEASRNLQGLLQGFLETLLRFVQ 154

Query: 150 -----PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
                      F    +     ++  +    +F  D   + +         +      ++
Sbjct: 155 GLLGQGGNLLGFFASLVGGVFQLLAALTLSIYFLYDLPRLGRAALLAFPEPYQPLVADLA 214

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
           R + + +     G  ++A   GL++G    L GVP   +LG +  +  +IP    I    
Sbjct: 215 RKLDRSVGGYVRGQLLVAFLVGLIVGVGLSLVGVPLAASLGFLAGVFNLIPFVGVIVSGV 274

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
            ++ L   G +      FL   +   +      P +VG   +L  +     ++ G
Sbjct: 275 PALLLAATGGLVKVLLAFLVLWLANQLEGNLFGPLIVGRATRLHPVTAIAAILVG 329


>gi|126174019|ref|YP_001050168.1| hypothetical protein Sbal_1792 [Shewanella baltica OS155]
 gi|153000310|ref|YP_001365991.1| hypothetical protein Shew185_1785 [Shewanella baltica OS185]
 gi|160874944|ref|YP_001554260.1| hypothetical protein Sbal195_1829 [Shewanella baltica OS195]
 gi|217973659|ref|YP_002358410.1| hypothetical protein Sbal223_2493 [Shewanella baltica OS223]
 gi|125997224|gb|ABN61299.1| protein of unknown function UPF0118 [Shewanella baltica OS155]
 gi|151364928|gb|ABS07928.1| protein of unknown function UPF0118 [Shewanella baltica OS185]
 gi|160860466|gb|ABX49000.1| protein of unknown function UPF0118 [Shewanella baltica OS195]
 gi|217498794|gb|ACK46987.1| protein of unknown function UPF0118 [Shewanella baltica OS223]
 gi|315267180|gb|ADT94033.1| protein of unknown function UPF0118 [Shewanella baltica OS678]
          Length = 360

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 106/317 (33%), Gaps = 12/317 (3%)

Query: 45  WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
           WP+      K   + T  A +  V  + + ++    L      +   L++ +      G+
Sbjct: 54  WPVAQML--KVGINRTAGASLVIVLFLGIVVLLTFGLIPSVWRQGVSLIADLPSMIDKGL 111

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
              + L +             +      +    +  L T  +  I +    +    L   
Sbjct: 112 LTIQTLIN-------QYPQFINPEQLDLMVGELKKLLDTQHVLDIAKQLIGYSASLLVLM 164

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
           +  I + + +FFF +D   +                +K+   + + I +   G  I  + 
Sbjct: 165 VYAILVPLLVFFFLKDKDQLISGSKRFFP-ANRQLARKVWFEMHQQIFNYIRGKVIEIVV 223

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFL 283
            G+     + + G+   V LGV+T +  +IP  GA +    +++    +    +     +
Sbjct: 224 VGVATYILFAVMGLRYSVLLGVLTGLSVLIPYVGATLVTLPITLVAFFQWGFSSEFGYLM 283

Query: 284 WGAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            G   +  +D   L P L    + L  +     ++      G+ G+F    L +L+  + 
Sbjct: 284 LGYGIIQALDGNLLVPILFSDAVDLHPVIIIAAVLVFGGLWGVWGVFFAIPLASLVKAVI 343

Query: 343 KESIMAIKENKEKISSN 359
                   E    + ++
Sbjct: 344 NAWPKTEVETLHGLDAS 360


>gi|332036909|gb|EGI73369.1| integral membrane transport protein [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 345

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 111/331 (33%), Gaps = 22/331 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M       + ++ +  + ++L  +        P + A  I     P+   F   K   S 
Sbjct: 1   MASLTGVNKSLIVFASLVVVLAGIKAASVIIIPFILAAFIAIICNPLIKFFARYKIPKS- 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               IA + V+ + +   + L       + +   ++                    +   
Sbjct: 60  ----IAVMLVVLIIVGLGVSLGGLVGQSINDFSQQLPEYKTQ--------------LKEE 101

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +W   L+   ++ I  +  +       +   A+           ++  +I+ + F   +
Sbjct: 102 FVWLVDLASQYNILINKDQLINMFDPGKMVDVATNMLTGLGGVMANMFLIILTVVFMLFE 161

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +S+++    E   P    K      + I S     T++++G G++     W+  V  
Sbjct: 162 GPMLSKKIHMALED--PDSKMKQIDRFLESINSYLAIKTLVSLGTGIIAAFYLWILDVDY 219

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            V  GV+  +   IP  G+ I+     +  LI      A  +         ++   + P 
Sbjct: 220 FVLWGVLAFMFNYIPNIGSIIAAVPAVLLALITQGPLVAGLVAAGYLTINTVMGNIVEPK 279

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            +G  + L  L  F  L+     +G +G+ +
Sbjct: 280 FLGKGLGLSTLVVFLSLIFWGWLLGTVGMLL 310


>gi|159029414|emb|CAO90790.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 365

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 124/335 (37%), Gaps = 13/335 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           ++     +L+   +  ++A ++ F    +    + ++  + +    I  +  + +  V  
Sbjct: 27  LLFQLFSYLEPLVSIFVTASLLAFVLD-VPIKLLQRRGVNRSGSIAIVFLIALLILSVLG 85

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           L L    + ++  L++ +    + G    + L         +    + ++          
Sbjct: 86  LILIPQIVEQLSSLINSLPQWIESGTEQIQNLEKWDKTQKYAIYIEQSITQLSERL---- 141

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
               TN +  +      F +  ++  L+I+F+++   F    G  I + + S        
Sbjct: 142 ----TNVLQTLSTQLLSFVLGTINSILNILFVLVLTVFLVLYGEQIWEGILSWIP---AP 194

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           +  K+  I+ +   + F G TI+A    L     + +  V   +  GV   +  +IP  +
Sbjct: 195 WNLKLRTIIRQTFETYFAGQTILAGILSLAQIFVFVILKVDYALLFGVAIGLTTLIPFAS 254

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
             +   +S  L+ + + +    +     I   I D  + P L+GG I L  +     L  
Sbjct: 255 AFTIIGISTLLMFQ-DFWLGLKVLTLTIIVGQINDNVIAPRLMGGMIGLNPVWIILSLFI 313

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G +  G+LGL I   + +++           +E +
Sbjct: 314 GGKVAGILGLLIAVPIASVLKSTIDIIRSQQREKE 348


>gi|116872345|ref|YP_849126.1| hypothetical protein lwe0927 [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741223|emb|CAK20345.1| putative membrane protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 348

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/355 (15%), Positives = 118/355 (33%), Gaps = 25/355 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  +I + LY L+     +L   I  F    + +  + +       +
Sbjct: 5   ERLKENNTARRVLVFLLIGIVLYLLRSMIDLILLTFIFAFLVTRLENVILKRVRIPRKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V     V ++      + ++ +LV  +V    +  P    +     G      
Sbjct: 65  VIVLYTLVAIFLYVAIVHFLPILINQISQLVDSLVKIYNN--PSDNTIVKWIVGFLKESN 122

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             K+L                 G++FI    S  G + L + L++I  +    FF  +  
Sbjct: 123 IQKYLQ---------------TGVNFIIASLSGIGSVGLSFFLALILSL----FFSLEKE 163

Query: 183 SISQQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            ++              +K+     +              +IA+   ++   A +L   P
Sbjct: 164 RVTSFTGQFMTSKVGFIFKEAAFFGKKFVATFGVVLEAQLMIALVNTIITTIALYLMDFP 223

Query: 240 SHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             ++L ++  ++ +IP    I     + +     G   +   + +   I   I    L P
Sbjct: 224 QLLSLSIMVFVLGLIPVAGVIISCIPLVLIAYSVGGFQDVIYILITVVIVHAIETYILNP 283

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L+     LP   TF  L+      G+ GL +G  +   +  I +      ++ +
Sbjct: 284 KLMSSKTNLPVFYTFIVLIFSETFFGVWGLIVGIPVFVFLLDILEVRNSEDRKKR 338


>gi|110638692|ref|YP_678901.1| hypothetical protein CHU_2298 [Cytophaga hutchinsonii ATCC 33406]
 gi|110281373|gb|ABG59559.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 371

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 60/348 (17%), Positives = 122/348 (35%), Gaps = 22/348 (6%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +L    I   ++  +I  S + +     PV  A +     +P+   FI +K  + T  ++
Sbjct: 9   LLQNLLITVILVTTMIFASTWLI-----PVSWAFLFACLLYPV-CMFIERKGLNRTLTSM 62

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           + T+    +    + FL    +L + +    V+   + GI            +       
Sbjct: 63  LVTLLFCVIMFFIMYFLIMQALL-IIQTNDNVLHKIKEGIES--------VILHIQSKTG 113

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
               HP SLK    T  + NG+  I    S  G   L   L+ +F    LFF       +
Sbjct: 114 LEFYHPHSLKESLSTIFQ-NGMSVISTQLSSVGTNVLTIALTPVF----LFFILNLRGLV 168

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
                   +       +         +++   G  I+     ++      L GV S +  
Sbjct: 169 KAFYIKNYKGNDLESIQTFITKSLTSMKNYLWGTMILTAVTAVMTYIILMLFGVKSAIFF 228

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVG 302
            V  AI+ +IP  G  I++ A+  ++ +     +             ++ +  LRP LVG
Sbjct: 229 SVFLAILNIIPYLGNLIAYIAILSFVWVTKESVSILIYITICLYFSNMIQENILRPKLVG 288

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             +++        ++ G    G+ G+ +    + +   + + +    K
Sbjct: 289 DKMEINAFLVLSAVMLGAIIWGVSGMVLFVPFLGIAKALVESNPEWNK 336


>gi|254390361|ref|ZP_05005578.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
 gi|294813840|ref|ZP_06772483.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064]
 gi|326442258|ref|ZP_08216992.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
 gi|197704065|gb|EDY49877.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
 gi|294326439|gb|EFG08082.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064]
          Length = 367

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 62/353 (17%), Positives = 131/353 (37%), Gaps = 31/353 (8%)

Query: 1   MRETMLNP-QGIMRWMIMFIIL-----VSLYFLKGF---FAPVLSALIIGFTSWPIYSSF 51
           M   +  P + +  W  + ++L     V+L+ ++ F     PVL AL+      P Y   
Sbjct: 1   MHTLLPEPVRRLAAWCAVILLLAGVGAVALWLVQTFRIAVTPVLLALLGTALLGPFYRRL 60

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS 111
               + S++  A +   +V+C+    +  +    +    ++++ +  A            
Sbjct: 61  -RAMKVSASLAAGLTCAAVVCVVGGAMYVVVKALIDNGPQILASLRDA------------ 107

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
                M  +E +    +    L + ++  L   G        S    +      + +  +
Sbjct: 108 ----AMGITEHFGAAGTSLADLAVNAKELLAKFGGTAASGVISGL-SVVGQGIATAVLAL 162

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
           + +FFF RD    S+   S+         +++ R   + +     G T IA+ + L++  
Sbjct: 163 LLIFFFLRDSDRASKLAHSVAPGHSGQMVEEMGRRAFEAVEGFMRGTTFIALIDALLITV 222

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI--EL 289
              +  VP  V LG +  + A IP        AV++ L+   +      L+  G +    
Sbjct: 223 GLLVLRVPGAVGLGALVFVGAYIPYLGAFISGAVAV-LVALADRGWVIALWALGVVLAVQ 281

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            +    L+P +    +++        +  G    G+LG+ +  PV+ A   VI
Sbjct: 282 VLEGHVLQPMIQSRTVQMHPAVVMLAITAGAGVAGILGMLLAVPVVAAAFGVI 334


>gi|158336614|ref|YP_001517788.1| hypothetical protein AM1_3482 [Acaryochloris marina MBIC11017]
 gi|158306855|gb|ABW28472.1| conserved hypothetical membrane protein [Acaryochloris marina
           MBIC11017]
          Length = 364

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 80/215 (37%), Gaps = 1/215 (0%)

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               +   +       L    +++  +I   +   D   + Q L +L    +        
Sbjct: 144 SSQKLILQSVDITKGLLGGVFNLLLALILSAYMLSDSQRLLQGLVALFPQPWEQRLADQV 203

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA-LGVITAIMAMIPGGAPISFT 263
             V + + +   G  ++++  G  +     L G+      LG I  +  +IP   P+   
Sbjct: 204 HPVSQRMGAYIQGRLLVSLILGTTVSIGLKLIGITEVALGLGAIAGLTNLIPFFGPVLGA 263

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++ + +    +    +FL   +   +    L P +V   + +P L     ++GG + +
Sbjct: 264 IPALLVAVAQGGWTVVWVFLLFVLIQNLETYVLDPLVVSPSVNVPPLYQLLAVLGGTQVL 323

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           G++G  I P  +A   V+ +   +  K + E+ + 
Sbjct: 324 GIIGALIAPPWVAAGGVLIENLYLQPKRDAEQQTQ 358


>gi|314968424|gb|EFT12522.1| conserved hypothetical protein [Propionibacterium acnes HL037PA1]
          Length = 404

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 107/336 (31%), Gaps = 28/336 (8%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFF-------APVLSALIIGFTSWPIYSSFISKK 55
           E   +  G+ +  I+ + + + +    F        AP+   L +  T++PI++  +  K
Sbjct: 49  EVATSKHGLPKLTIVLLTVAAAWLGLSFLHELSSVVAPLFFGLNLLITAYPIHTWLVKHK 108

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
                  A  A  +V+ +    ++ + +     + +L S                  IP 
Sbjct: 109 CPR-WISATTAGTAVIVVLAAGVVGMVWSVAAMINQLQSY-----------------IPQ 150

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
                       +     + +    LK      +    +            II ++  + 
Sbjct: 151 MEKIYTQLLHWSTQLGYSQDVIADKLKKIDPQQVMSVVTSVASDTTSVVTMIIVILTGMI 210

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F   D   +  +L   G                  IR  +L  T+  +   L   +A  +
Sbjct: 211 FMVMDTPQMHDRLRMAGSRKPDVVLA--LESFASGIRKYWLVTTVFGLIVALFDWAALLI 268

Query: 236 AGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
            GVP      + + +   IP  G  I     ++  L K     A  + +  ++  F++  
Sbjct: 269 IGVPLAGVWALFSFLTNYIPNIGFIIGVIPPALLALFKDGWVAAVAVVVSYSVLNFVIQS 328

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            ++P   G  + L    +F  L+      G LG  I
Sbjct: 329 IIQPKFAGDAVGLTPTMSFVSLLLWGWAFGALGTLI 364


>gi|119716027|ref|YP_922992.1| hypothetical protein Noca_1793 [Nocardioides sp. JS614]
 gi|119536688|gb|ABL81305.1| protein of unknown function UPF0118 [Nocardioides sp. JS614]
          Length = 387

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 85/257 (33%), Gaps = 5/257 (1%)

Query: 98  LANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFG 157
                    P WL  +      +    +  +    +  + E     N +  +       G
Sbjct: 135 QVQSITDNAPDWLDSL----QQNRRIQELDAEYDVIDKVKEYVSDGNYVSTLFGGVLGIG 190

Query: 158 MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG 217
           +  L    +   +I+   +F        + L  L           +   V + +     G
Sbjct: 191 LAVLSALANAFIVIVLTLYFLASLDKTKKALYQLAPASRRERVALLGDRVLRGVGGYVSG 250

Query: 218 MTIIAIGEGLVLGSAYWLAGV-PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIF 276
             I+A+  G+      ++ G+    VAL  + A++ +IP         V   +    +  
Sbjct: 251 AFIVAMCAGISSLVFLFIVGLGQYAVALAFVVALLDVIPMIGATIGAVVVTAIGFAEDPR 310

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
                 ++  I   + +  + P ++   + +P   T    + G   +G++G  +     A
Sbjct: 311 IGIACIVFYVIYQQVENYVIYPRVMSRSVDVPGAVTVIAALVGAALLGVVGALLAIPTAA 370

Query: 337 LIAVIWKESIMAIKENK 353
            I ++ +E ++  ++ +
Sbjct: 371 AILMLTREVVVRRQDAR 387


>gi|291004927|ref|ZP_06562900.1| integral membrane protein [Saccharopolyspora erythraea NRRL 2338]
          Length = 407

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 102/312 (32%), Gaps = 18/312 (5%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSW----PIYSSFISKKEESSTFLAVIATV 68
           R +++   +    ++  + A V   ++I         P  +    K    +   A++  V
Sbjct: 36  RVLVVAAAVGLAGYVLTYLAAVAMPVVIALLLAALLGPFSNWLTGKGAPRALATALVVCV 95

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ +  V L  +    + ++  L ++V    + G     WL   P  +   +L      
Sbjct: 96  GLISVTGV-LALVVGTVVADLPRLQAQVSNTLESG---EAWLRLGPLRLDQRQLDELVND 151

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +L+      +       +   A   G +     L    ++  L FF  DG  I   L
Sbjct: 152 ATATLQTHQGGIISG-----VLSTAVTSGEVLGGALL----VLFTLIFFLYDGDRIWNFL 202

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                           R     +         +A  + + +G +  L GVP   AL  + 
Sbjct: 203 LRGFPLGSRDRVDLAGRSGFDALTGYVRATAAVACMDAIGVGVSAALIGVPLAPALAALV 262

Query: 249 AIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A +P    +    +++ + L+    + A  +     +   +    L+P L+G    L
Sbjct: 263 FLGAFVPYLGILITGTLAVLVCLVTVGFWPAVLMAAIVIVVTQLEGHVLQPLLLGRASHL 322

Query: 308 PFLPTFFGLVGG 319
             L     +  G
Sbjct: 323 HPLAVVLSISVG 334


>gi|319956009|ref|YP_004167272.1| hypothetical protein Nitsa_0251 [Nitratifractor salsuginis DSM
           16511]
 gi|319418413|gb|ADV45523.1| protein of unknown function UPF0118 [Nitratifractor salsuginis DSM
           16511]
          Length = 342

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/360 (11%), Positives = 118/360 (32%), Gaps = 28/360 (7%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M      +  +    +  +      F   ++ A+++   +  +                +
Sbjct: 1   MDRRTLFVLILFSIALWGAYSIYAPFLLSMVVAVLLAMATSNLTRYLTRTLRSRK-IATL 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  + +  L + P++++   G+  +  L  + +               +   +     W 
Sbjct: 60  VMVLLLFLLILAPIIYIATTGVEYLTHLDQQTIREIFAKA------RSLTENIPYVNHWA 113

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +       +    +          I  + ++ G   L +    + +I        +    
Sbjct: 114 EEYLQVDKVIPYLKG---------ISLYITKMGSKGLGFVKDTVMVIAFYAAAVYNQDRF 164

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              L +L         +++   +   +      + + A+ EG + G      G    +  
Sbjct: 165 IATLVALIP-APQRESREMVAEIASTMEVVIYSIIVTAVFEGFLFGIFVSYFGFDG-LLF 222

Query: 245 GVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPF--- 299
           G I    +++P  G  + +  +S+Y   +     A  + ++  + + I+ D  ++P    
Sbjct: 223 GAIYGFASLVPVVGGALVWVPLSLYAWSELGPQPALAIAIYSVVMISIIADTFIKPIIIK 282

Query: 300 -----LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                L+   I++  L  FF ++ G+ T G  G+ +GP +   +    +  ++     +E
Sbjct: 283 MIKEQLLHVQIRINELVIFFSIIAGMSTYGFWGMILGPAITTFLFAATRIYLVYSSALEE 342


>gi|254410220|ref|ZP_05024000.1| conserved domain protein, putative [Microcoleus chthonoplastes PCC
           7420]
 gi|196183256|gb|EDX78240.1| conserved domain protein, putative [Microcoleus chthonoplastes PCC
           7420]
          Length = 389

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/340 (13%), Positives = 121/340 (35%), Gaps = 21/340 (6%)

Query: 8   PQGIMRWMIMFII----LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + ++ W+++ +     L +L ++    + +L+A +I F                 T  A
Sbjct: 9   QKVLITWLLVLVTGWVTLSALSYVGEIISILLTASLIAFLLNYAVRVLRPFLP--RTVAA 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++  +      +   L L      + ++LV++           P  L      +   + W
Sbjct: 67  ILVYLVAAVFVVFIALTLAPPVFNQGRQLVTRF----------PELLEQGQQQLVDFQAW 116

Query: 124 TKHLSHPQSLKILSETFLK--TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +   + P  ++IL    L       + I        +    + +  I +++  F+   DG
Sbjct: 117 SVEHNLPFDVRILGSQMLARIQAKAEAIASTGLGLVVGTFSWFIDFILVLVLSFYMLIDG 176

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + + + S+   +       +++ + + ++    G  ++ +     L   + L  VP  
Sbjct: 177 ERLWRGITSI---VSAKIRYGLTQALRRNLQRFVSGQLLLGLFMATTLTLGFRLLQVPFF 233

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +   V    M +IP        A  + ++   + + A  +         I D  + P ++
Sbjct: 234 LLFAVFIGFMEIIPFVGATLGIATVVIVVAFIDWWLALEVLGVSVALQQIKDNLIAPRIM 293

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           G    L  +     L+ G +  G+LG+ +   +  ++  +
Sbjct: 294 GNLTGLSPVIILTSLLLGAKIGGILGVILAIPVTGVVKSL 333


>gi|296328008|ref|ZP_06870543.1| permease [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296154964|gb|EFG95746.1| permease [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 363

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/331 (14%), Positives = 120/331 (36%), Gaps = 8/331 (2%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           K +F  ++ ++ I     PI      K + +      ++ V ++ +FI+  L +    + 
Sbjct: 37  KDYFMTIIMSIFIAILLEPIVKYLKKKSKINDILAISLSIVFIIVIFIILSLIVIPEIIS 96

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            +K L       ++  I       +I   +    ++T ++    +      +   TN   
Sbjct: 97  SIKTLNDIYPTISEKVIITG---KNIANYLAKKNIYTINMDEIDNYFTNFVSNNTTNITK 153

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP----AYWKKI 203
            I           + +  ++    +  F    D   + + L+++ + +F      Y  K 
Sbjct: 154 LISSILGSLIDWTIGFT-NLFLAFVLAFLILLDKKHLIKTLENMIKIIFGVKNTPYIMKK 212

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
             +   +      G  I++   GL +     + G P      ++  I  MIP    I   
Sbjct: 213 LSLSKDIFLGYVSGKIIVSTIVGLCVYIVLLITGTPYAALSAILLGIGNMIPYVGSIIGG 272

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
            ++ +L++         L +   I   +    + P ++G  + L        ++      
Sbjct: 273 IIAFFLILLVAPIKTIILLVAITISQLVDGFIVGPKIIGNKVGLNTFWIIVSMIIFGNLF 332

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G++G+F+G  +M+++ + + + +   ++  E
Sbjct: 333 GIVGMFLGAPIMSILKLFYVDLLKKAEQGGE 363


>gi|325181210|emb|CCA15624.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 790

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 76/202 (37%), Gaps = 10/202 (4%)

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK---KISRIVPKVIRSTFL 216
           F+   +   F I +LF+      +    ++   E L P   +   ++   + KVI   F 
Sbjct: 358 FVSLGIRAFFFISSLFYLLC---TKWDPIERFVEDLLPIQNEKRPQVVHSIRKVIEGVFF 414

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNI 275
               ++    LV   ++ +           +T  ++++P   P +     ++ + +  + 
Sbjct: 415 VPLKMSSLHALVTLISFSIVRADFVYLATTLTFFISIVPIIPPYLVCVPWALAIGVTSSF 474

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             A  LF    I   I+D  L        + L    +   +V GV   G  G+  GP+ +
Sbjct: 475 IKALILFCVQYIAFTILDDMLY---EKSIVALNSYVSALSVVFGVYVFGFEGVIFGPLSV 531

Query: 336 ALIAVIWKESIMAIKENKEKIS 357
             +   ++ S   I+  ++ ++
Sbjct: 532 CGVYFAYEVSNHGIQAAQDDVT 553


>gi|119899427|ref|YP_934640.1| hypothetical protein azo3137 [Azoarcus sp. BH72]
 gi|119671840|emb|CAL95754.1| conserved hypothetical membrane protein [Azoarcus sp. BH72]
          Length = 372

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/325 (16%), Positives = 114/325 (35%), Gaps = 12/325 (3%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
            + L    AP   A +  +   P  +  + ++       AV+  ++ + L +V L  +  
Sbjct: 25  FWLLSPILAPFAVAAVFAYICDPAVNWMVVRRVPRP--AAVLLVITGLALILVALTLIL- 81

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                +  L  + V   Q    +    +     +    L  +        +        T
Sbjct: 82  -----VPMLYREAVTLIQRLPDLVEVFNQRAAPLLREHLGIRLQLDAGQARKWLAQNADT 136

Query: 144 NG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
               I  +       G+  +    ++  + + +F+  +D   +   L       +     
Sbjct: 137 AQDVIPILLGHIKTGGLALIALVANLFLVPVVMFYLLQDWPRLLAALQRSVPRPWLERTM 196

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPI 260
           +I R +  V+     G   + +   +      WLAG+   + +GVIT ++  IP  G   
Sbjct: 197 RIIRDIDSVLSEFLRGQLSVMLLLAVFYSVGLWLAGLNFALPVGVITGLLVFIPYVGFGG 256

Query: 261 SFTAVSIYLLIKGNIFNA-TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                 +  L++G+ ++    + +   +   I    L P+LVG  I L  L   F L+  
Sbjct: 257 GLVLAILAALLQGDGWSTLIGVGVVYGLGQLIESFALTPYLVGERIGLHPLAVIFALMAF 316

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKE 344
            +  G +G+ +   + A + V  +E
Sbjct: 317 GQLFGFVGVLVALPVSAALLVALRE 341


>gi|170749965|ref|YP_001756225.1| hypothetical protein Mrad2831_3566 [Methylobacterium radiotolerans
           JCM 2831]
 gi|170656487|gb|ACB25542.1| protein of unknown function UPF0118 [Methylobacterium radiotolerans
           JCM 2831]
          Length = 657

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/363 (14%), Positives = 106/363 (29%), Gaps = 25/363 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R+ +     +   +++   + +LY  +    PV  A+++ F   P       +      
Sbjct: 11  LRQGLPIFVALASILLVVATMAALYLAREILVPVTLAILLSFVLVP-----AVRVLRRLR 65

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ-----------------HG 103
                A + V+ +    L  +      E  +L S +    Q                   
Sbjct: 66  VPRAPAVLLVVVIVFGALFGIGSLIASEASQLASDLPRYTQVMRTKIKDLRGATAGTGTL 125

Query: 104 IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY 163
             +   + D+           +    P S        L       +    +  G I    
Sbjct: 126 SRIVDMVQDL-SATLQPPPAAEVRGEPGSRTHPLTVELTPARASVVDTLQTFAGPILHPL 184

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
             + + +I  +F   +     ++ +   G                  +   FL    + I
Sbjct: 185 ATTGLILIFTIFILLQREDLRNRAIRLAGGSGDLRRTTAAIDDATSRLSRFFLAQLALNI 244

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
             GLV+G   W+ GVPS    GV+ AI+  +P         + + L    +   +  +  
Sbjct: 245 AFGLVIGLGLWVIGVPSPTLFGVLAAILRFVPYIGAAISALLPLILAAAVDPGWSMVIAT 304

Query: 284 WGAIELF--IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                +   I    + P L G    L  +             G +GL +   L   + V+
Sbjct: 305 AALFLVVEPICGHVVEPLLYGHSTGLSPVAVILAATIWTFLWGPIGLVLATPLTVCLVVL 364

Query: 342 WKE 344
            + 
Sbjct: 365 GRH 367


>gi|254361725|ref|ZP_04977861.1| hypothetical membrane protein [Mannheimia haemolytica PHL213]
 gi|261492038|ref|ZP_05988613.1| putative permease [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261495015|ref|ZP_05991483.1| putative permease [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|153093251|gb|EDN74257.1| hypothetical membrane protein [Mannheimia haemolytica PHL213]
 gi|261309331|gb|EEY10566.1| putative permease [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261312321|gb|EEY13449.1| putative permease [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 358

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 55/345 (15%), Positives = 116/345 (33%), Gaps = 13/345 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R+   +PQ ++ + I+ I    +YF      P+L AL+  +   WPI     SK +   T
Sbjct: 10  RKKFTDPQIVVLFSILLIGFGIIYFFSDLLMPLLVALVFAYLLEWPI-RFLSSKLKLPRT 68

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++     + L     + L      +    +  +         +  WL  +P      
Sbjct: 69  LSVILVLGGFIALLSFLGVVLLPSLWNQAVTFIQDLPSMFNL---LNAWLQALPEHYPEL 125

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             +    S   + K    +  ++     I    S  G+    + + ++      FF  +D
Sbjct: 126 VDYATLDSIVNTAKSNILSMGESLLTLSINSIISLVGLGIYTFLVPLMV-----FFLLKD 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              + +    +          ++   + + I +   G  +  +  G+V    +    +  
Sbjct: 181 KIVLMRSFSKVLPQ-NRRLATRVWFEMQQQIANYIRGKFLEILIVGVVTYIIFLFFDLRY 239

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRP 298
            + L V   I  ++P  GA +    V +  L +  +       +   I   ++D   L P
Sbjct: 240 PLLLSVAVGISVLVPYIGAVLVSIPVMLIALFQFGLSPDFYYLMLAFIISQLLDGNLLVP 299

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           FL    + L  L     ++      G  G+F    L  L+  + +
Sbjct: 300 FLFSEAVNLHPLTIIIAVLIFGGLWGFWGVFFAIPLATLVKAVLQ 344


>gi|149177528|ref|ZP_01856131.1| predicted permease [Planctomyces maris DSM 8797]
 gi|148843678|gb|EDL58038.1| predicted permease [Planctomyces maris DSM 8797]
          Length = 400

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 57/342 (16%), Positives = 118/342 (34%), Gaps = 41/342 (11%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +    ++ +LYF +  F P+  A+++ F   P+            +  A I  +S+  +
Sbjct: 64  ILATLGVVHALYFARAIFIPIALAIVLFFLLAPLVRFLTRVCPIPESLSAAIVVLSLTFM 123

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             +   FL                       PV  WLS  P     +E   + +  P   
Sbjct: 124 IGLASYFLAS---------------------PVSDWLSSAPATFRKAEQKLRFIIDPVDK 162

Query: 134 KILSETFLKTNGIDF-----------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
              + + +                   P   S      +++   +   ++ ++     G 
Sbjct: 163 IDQASSQVSDIAGGKEKDDVVKVSIQQPPVTSYLLSSTVNFLAGVTITVVLVYLLLAMGH 222

Query: 183 SISQQLDSLGEHLFPAYW-KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
                +  L   L        + R V   I    + +T I IG G+++G+  WL G+P  
Sbjct: 223 RTLNSVVELLPTLDDKRGLVTMIRNVENGISRYLVTITAINIGLGIIIGTVMWLLGLPDP 282

Query: 242 VALGVITAIMAMIPG-----GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           + LG++ A +  IP      GA ++F    +YL           +++   +   +     
Sbjct: 283 ILLGIMAATLNFIPFVGAFIGAAVTFLIGIVYLNTPAEAMLGPLMYI---VINTLEGNVF 339

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
            P ++G  +KL     F  ++      G+ G+ +   L+ ++
Sbjct: 340 TPMILGHSMKLNPALVFVCIIFWGWAWGVGGILLAVPLIGMV 381


>gi|323489867|ref|ZP_08095091.1| hypothetical protein GPDM_10965 [Planococcus donghaensis MPA1U2]
 gi|323396502|gb|EGA89324.1| hypothetical protein GPDM_10965 [Planococcus donghaensis MPA1U2]
          Length = 363

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/346 (11%), Positives = 114/346 (32%), Gaps = 8/346 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS---TFLAVIATVSV 70
            +++ I L  L  +     P+   ++I     P+    +               +  +  
Sbjct: 14  ILLVAITLFFLGKIDYVLEPIQ--IVIATIFAPVLLGGLFYYLLRPIVNWLARFVPKIVG 71

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +    +       +     +++K V +  +  P            + +      ++  
Sbjct: 72  IGIIFTIIALTASLLLYFFGPVITKQVDSLVNLAPETVEEVTEESNSFIANFQFGGVTGS 131

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           +      +     N  + +         + ++  + +I +   LFF  +D       L  
Sbjct: 132 EIRMWTLDYV--ENLSEGLLNNVMDILTMLMNVVVVLIVVPFVLFFLLKDDDKFIPHLTK 189

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                     KKI + V + +    +G   +A   G+++   Y + G+   ++L +    
Sbjct: 190 YLPEEHKMEGKKILKDVDQTLSDFIVGQAFVAGVVGVLMYIGYLIIGLDYALSLAIFAMF 249

Query: 251 MAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           + ++P  G  +         L  G+++ A  + L   +   +    + P ++G  + +  
Sbjct: 250 LIIVPFLGPLLGIVPALFVALTSGDMWMAVKVILVLLVVQQLEGNLVTPNIMGNRLNIHP 309

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L     L+      G +G+ I     A++  +     +  +  K++
Sbjct: 310 LTIILLLMIAGALYGFIGILIAIPTYAVLKTLVHNFRLFNRLRKKR 355


>gi|304437787|ref|ZP_07397737.1| possible permease [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304369235|gb|EFM22910.1| possible permease [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 342

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 57/352 (16%), Positives = 124/352 (35%), Gaps = 22/352 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I+  ++   +L S +F + F   V  +L++     P+  +   ++       A      
Sbjct: 9   SIILAIVFAALLSSFWFFQDFAFIVFLSLLLQILLQPVVDAMERRRIPRGIASA------ 62

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
                           +  +  LV   VL+      + R+++++P       L    L  
Sbjct: 63  ------------GAILLFLLLVLVLLSVLSRSVVPSLQRFVTELP--SIGQGLQQMPLLT 108

Query: 130 PQSLKILSETFLKT--NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              L+   E+FL    +    + R +  F +  +   +  + +I   F+  +DG  I + 
Sbjct: 109 EMDLQQEMESFLDKLRSVGAELLRASLSFLLAAVGKIMDFVIIIFVSFYLLKDGKMIKRW 168

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L  L  +        +   +   +R       ++ I  GL++   + L G+P      ++
Sbjct: 169 LAGLFPYGSRGRVLSLFDRLLHALRIYVCSQLVMCIITGLIVFLYFVLMGLPYGSVFALL 228

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           + I   +P   P + +A+ I +             L+      I    + P LVG  + L
Sbjct: 229 SGISEFVPVLGPTAASALGIIMTASAAHDLTVQTALFYLALTQINHNIVYPALVGKSLHL 288

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             +    G+V G   +G  G+F+    M ++ ++  +     K    +    
Sbjct: 289 HPVAVILGVVFGGEILGAAGMFLAVPFMVIVKIVVTDIYHEQKTETPEGEEE 340


>gi|226324526|ref|ZP_03800044.1| hypothetical protein COPCOM_02310 [Coprococcus comes ATCC 27758]
 gi|225206974|gb|EEG89328.1| hypothetical protein COPCOM_02310 [Coprococcus comes ATCC 27758]
          Length = 460

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/380 (13%), Positives = 128/380 (33%), Gaps = 48/380 (12%)

Query: 14  WMIMFIILVSLYFLK--------------GFFAPVLSALIIGFTSWPIY----SSFISKK 55
           + ++    V  YFL                   P+L  ++I +   PI        I + 
Sbjct: 48  FFLVIAACVIFYFLLLRIEDISVGVSKVIDVLKPILYGMVIAYLLNPIVKQIDRWLIPQL 107

Query: 56  EESST-------------FLAVIATVSVMCLF---IVPLLF-----LFYYGMLEMKELVS 94
           ++  +             F A++  ++++      ++P L+     +      ++ ++V+
Sbjct: 108 KKKMSQEKAKKVSRSVGVFAALVMLLALILALCNMLIPELYKSIRDMVQTLPGQISDMVT 167

Query: 95  KVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFAS 154
           K++   +            P G+ A  L  K     Q+             +  +     
Sbjct: 168 KIISIQKDTS---------PAGVMARNLLEKGSDALQNWIKQDLLTKVNEVMSNLTVGII 218

Query: 155 RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRST 214
            F    L++ + +I  +  LF          + + ++           +++   ++    
Sbjct: 219 NFVSEILNFLIGLIVSVYILFSKETFSAQSKKIVYAVFRTDHANMILHLTKKSNEIFGGF 278

Query: 215 FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGN 274
            +G  I ++  G++      L  +P  + + VI  +  +IP   P      S  L++  +
Sbjct: 279 IIGKIIDSMIIGVLCFFGLTLLKMPYILLISVIVGVTNVIPFFGPYIGAIPSAVLILLND 338

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
                   ++  +   +    + P ++G    L      F ++ G    G +G+ +G   
Sbjct: 339 PIKGLSFLIFILVLQQLDGNVIGPKILGNSTGLSAFWVVFSILLGGGLFGFVGMIMGVPT 398

Query: 335 MALIAVIWKESIMAIKENKE 354
            A++  I    I  + E K+
Sbjct: 399 FAVVYYIITMLINHLLEKKK 418


>gi|92118409|ref|YP_578138.1| hypothetical protein Nham_2910 [Nitrobacter hamburgensis X14]
 gi|91801303|gb|ABE63678.1| protein of unknown function UPF0118 [Nitrobacter hamburgensis X14]
          Length = 660

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 55/360 (15%), Positives = 114/360 (31%), Gaps = 27/360 (7%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + +   ++  +++  LY  +  F P+  A+++ F   P+           +  + ++  
Sbjct: 19  DRALTSAIVAALVICGLYVGREIFVPIALAVLLSFVLAPLVDILERWHSPRAASVPLVVV 78

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH- 126
           ++ + LF   L  L    +  + E + +     Q  I   R L+       A+++     
Sbjct: 79  LAFVALFA--LGSLIANEVRHLAEGLPRYQQTMQQKIQSLRALTATGPLDRAADILQNLG 136

Query: 127 ------LSHPQSLKILSETFLKTNGI------------DFIPRFASRFGMIFLDYCLSII 168
                    P S    +    KT G                    S      L    ++ 
Sbjct: 137 KEINVPQGQPPSPSAATSPPSKTPGEVEPIPVQVRPPPQSALENISALITPLLHPLATVG 196

Query: 169 FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLV 228
            +I+ + F       +  +L  L                   +   FL    +    G++
Sbjct: 197 VVIVFVVFILFQREDLRNRLIKLAGSNDLQSATAAIDDAAGRLSRLFLMQVALNTSFGVI 256

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
           +     + GVPS +  G++ AIM  +P      F A    L +   +     + LW    
Sbjct: 257 VAIGLLVIGVPSAILWGILAAIMRFVPYVG--VFIAAFFPLTLAVAVDPGWSMLLWSGAL 314

Query: 289 LFIVDKTL----RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           + + +  +     P LVG    L  +             G +GL +   L   + V+ + 
Sbjct: 315 ILLTELVIGQVFEPLLVGHSSGLSPVAVVASATFWTALWGPIGLVLATPLTICLVVLGRH 374


>gi|39936906|ref|NP_949182.1| membrane transporter [Rhodopseudomonas palustris CGA009]
 gi|39650763|emb|CAE29286.1| possible membrane transport protein [Rhodopseudomonas palustris
           CGA009]
          Length = 652

 Score = 74.5 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 61/355 (17%), Positives = 124/355 (34%), Gaps = 30/355 (8%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            ++  II+ +LY  +  F PV  A+++ F      +   S +   +  +A I+TV     
Sbjct: 22  TILAVIIISALYVGREVFVPVALAILLSFVLARPVNFLQSLRVPRA--IAAISTVLFAFA 79

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS----DIPGGMWASELWTKHLSH 129
            I  L  L    +  + + + +     Q  I   R ++     +       +  +K L+ 
Sbjct: 80  VIFALGSLIATQLSRLADDLPQYQSTIQSKITSLRGVTGGSTTLERAEGMLQNLSKELNK 139

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGM---IFLDYCLSIIFMIIALFFFYRDG----- 181
           P++    S +   T+    +              L    S+I  +I+       G     
Sbjct: 140 PKNAPAPSLSNPPTSSSRPVTPVPVEVLQPDPGTLANLRSLIAPLISP--LATTGIIVIF 197

Query: 182 --------FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
                     +  +L  L                   +   FL   +I  G G+++G+  
Sbjct: 198 VIFILLQREDLRNRLIRLAGTRDLQRTTAALDDAASRLSRLFLNQLLINSGFGVLIGTGL 257

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
           W+ GVPS    G++ A++  +P    I   A  + L +  +   +  + +W AI  F+++
Sbjct: 258 WIIGVPSPALWGILAAVLRFVPYIGSIISAAFPLTLAVAVDPGWS--MLVWTAILFFVIE 315

Query: 294 ----KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                 + P + G    L  +             G +GL +   L   + V+ + 
Sbjct: 316 PAIAHVVEPMVYGRSTGLSPVAVVISATFWTALWGPIGLVLATPLTVCLVVLGRH 370


>gi|310828588|ref|YP_003960945.1| sporulation integral membrane protein YtvI [Eubacterium limosum
           KIST612]
 gi|308740322|gb|ADO37982.1| sporulation integral membrane protein YtvI [Eubacterium limosum
           KIST612]
          Length = 363

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 58/344 (16%), Positives = 126/344 (36%), Gaps = 9/344 (2%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           ET      I+ +M   I+ +  + +  +  P+L+  IIGF    +    I          
Sbjct: 2   ETEKRRAFIIDFMYFAILALLCFAVLKYAMPLLAPFIIGFALAYLLKGPIRLLSGKLRLN 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV--LANQHGIPVPRWLSDIPGGMWAS 120
             I+ + V+ +F   +  L     ++      +++  L   + + V   L  I  G+  S
Sbjct: 62  GKISAIVVVLVFYGTIGTLISLLGVKAFAASRELIFNLPQIYALHVEPVLMGIFDGVEQS 121

Query: 121 EL-----WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
            L         L    +  + S   + ++         S          + ++ +II+ F
Sbjct: 122 VLRMDPALVAALEEMFNRLVQSLGQMVSSLSMGAMGTVSDIASSLPGLFIKLLLLIISTF 181

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F   D   ++  +           + +I   V   +        +I     + L     L
Sbjct: 182 FIAIDYDRLTGFVMHQLNGKTRTVFVQIKEYVVGTLFVCIRSYALIMSITFVELVIGLTL 241

Query: 236 AGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
            GV + + +  + A+  ++P  G        ++   ++GN        L   + + +V  
Sbjct: 242 IGVDNALIIAFVIAVFDILPVLGTGGIMIPWTVITALQGNY-PLALGLLLVYLVITVVRN 300

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
            + P +VG  I L  + T   +  G++  G++GLF  P++++L+
Sbjct: 301 IIEPKIVGSQIGLHPVITLASMFVGLQLFGVVGLFGFPIVLSLL 344


>gi|255280313|ref|ZP_05344868.1| sporulation integral membrane protein YtvI [Bryantella
           formatexigens DSM 14469]
 gi|255269404|gb|EET62609.1| sporulation integral membrane protein YtvI [Bryantella
           formatexigens DSM 14469]
          Length = 348

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/345 (13%), Positives = 120/345 (34%), Gaps = 6/345 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M         I    I   + + + ++     P   A ++     P       K      
Sbjct: 1   MSMHKPYKDAIKLTGIAIAVFLGMKYILPVAIPFFIAWVLVRFLMPGAVFLEEKLHLKKV 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               I  V +     + L  L    + ++  L +   +  Q    + +            
Sbjct: 61  LAGGILLVLLTGAAGIALYLLGSTLIRQVCNLAANFDIYMQKAENLLKVCCSAVEKNTGI 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                  +      ++ E  L+T  +  + + +  + M  L++   ++ + ++     +D
Sbjct: 121 HA-QAVENFIYDNMLVVEQRLQTYAVPDVLKNSISYLMSMLEWLGVVLIVFVSYMLILKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              + + L   G +      +KI+  +  +  +      +I +   ++  +   L G P 
Sbjct: 180 YEKLGEVLKKYGIY---ERTRKINAAMMSLGGAWLRAQLLIILTVTIICVAGLALLGYPY 236

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            + LG++  ++  +P  G         +  +  G  +   CL +   + +  + + L P 
Sbjct: 237 ALLLGIVIGLLDALPFIGTGTILVPWGVIQMFTGKFWLGVCLIVL-FLIINTLREFLEPK 295

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L+G  + +  +     +  G+   G+ G+ +GP+ + LI  I++E
Sbjct: 296 LIGDRMGIYPIAMVAAVYVGICVYGVAGVVLGPISLMLIIEIFRE 340


>gi|157693317|ref|YP_001487779.1| sporulation integral membrane protein YtvI [Bacillus pumilus
           SAFR-032]
 gi|157682075|gb|ABV63219.1| sporulation integral membrane protein YtvI [Bacillus pumilus
           SAFR-032]
          Length = 372

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 60/344 (17%), Positives = 116/344 (33%), Gaps = 12/344 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +M   I    +V LY    F  P   ALI+     P+             F+ VI  +
Sbjct: 11  RSLMMISIAVFAVVFLYQSFPFLYPFWIALIVSCLIHPVVCKIEEITGMPRGFVVVIVLL 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD---IPGGMWASELWTK 125
             + L    +  L    +     L   +       I +         +P     +  +  
Sbjct: 71  LFLVLAAGFITLLVAEIISGSAYLAKVLPGHLDQIIGIVERFFTDKILPLYHDVTAQFNT 130

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASR-------FGMIFLDYCLSIIFMIIALFFFY 178
             +  +   +     L       I  F S+       F  +  D   +++F  +A FF  
Sbjct: 131 LQAGQKESILGQIQALGDEAAAKIGTFLSKTLELIPAFLGLLPDAAATLLFSALATFFIT 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D F++ +    +    +  + + I   + K I        ++      ++     +  V
Sbjct: 191 KDWFTLKKYGSRIFPAKWMQHTRAILSEIKKAITGFMKAQLLLVAMTIGLVIIGLIILKV 250

Query: 239 PSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
              + + +    + ++P  G+   F    IY  + GN+  A  L +   I + I  +   
Sbjct: 251 EHALVIALCIGFVDLLPYIGSGTVFLPWIIYSAMTGNLSLAIGLGILY-IVVLIQRQISE 309

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           P ++   I L  L T   L  G++  G LGL IGP  + +    
Sbjct: 310 PKVLSKSIGLNPLATLVALFVGLKWFGFLGLVIGPASLVVWQAF 353


>gi|330833351|ref|YP_004402176.1| putative permease [Streptococcus suis ST3]
 gi|329307574|gb|AEB81990.1| probable permease [Streptococcus suis ST3]
          Length = 376

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 52/340 (15%), Positives = 122/340 (35%), Gaps = 7/340 (2%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L G    +    I  F           + E+ S       +++++ + I   L +    +
Sbjct: 35  LLGSMNSLFIGAIFAFILNVPMKKLEDQFEKISFLKKSKRSLAIVGVLIGFALIVTGLVV 94

Query: 87  LEMKELVSKVV-LANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS--LKILSETFLKT 143
           + +  LV+ V  L +     +P+ ++ +   + ++ L +  +    +  L  L    L +
Sbjct: 95  IVLPTLVTTVSELVSVSSTAIPKSVNALTNFLESNGLLSGQIGDQIASFLDQLKNLTLIS 154

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           + +  I               +++I               +        +   P    ++
Sbjct: 155 SLVTPILSGLVSNVTGIFSNTMTLIMAFFFTLAILGSKEHLQAMTRKFLQATLPEKAVRV 214

Query: 204 SRIVPKVIRST----FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
              + +VI  T     +   + A   G ++  +Y L+G+P     G++  +++ +P   P
Sbjct: 215 VNYIGEVIVDTYDRFLMSQIVEACIIGTLVFVSYSLSGIPYASMAGILAGVLSFVPYIGP 274

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
            S   +S   +   N   A        I   I    + P +VG  + LP L T    + G
Sbjct: 275 FSACLISALFVAVQNPLLALWSIALFQIIQLIEGNVIYPRVVGQSVGLPTLFTLAAALIG 334

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
               GLLG+     + A++  + +E + +  + + ++ + 
Sbjct: 335 GNLFGLLGMVFFTPIFAVVYRLVREWVASRLKKQGELLAE 374


>gi|114777480|ref|ZP_01452477.1| hypothetical protein SPV1_14309 [Mariprofundus ferrooxydans PV-1]
 gi|114552262|gb|EAU54764.1| hypothetical protein SPV1_14309 [Mariprofundus ferrooxydans PV-1]
          Length = 370

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 56/354 (15%), Positives = 121/354 (34%), Gaps = 14/354 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M    L    ++  +++  + ++          +L A ++    +P  S  I +   S T
Sbjct: 7   MLSHPLLQASVIFSVLVTALALTASLFYPLLFTLLVATLLYAAMFPTTSYLIRR-GVSPT 65

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              V+    ++   ++    L+     ++ +L ++    +     +   ++         
Sbjct: 66  QAVVMVMTVIVTFVLLMGALLYPLIAAQLDQLSTRTGSIDVRLTRLLLQVNT-------- 117

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             +T            +   L  +    +    +     F D   S+  + +  FF  RD
Sbjct: 118 --FTTGYLDISFNPAETAAQLVNSVTHSLDTMQATVTSYFDDVAFSLFLVPLITFFLLRD 175

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
             S+  Q   L  + +      I       + +   G+TI  +   L+  + +WLAG+  
Sbjct: 176 FRSLRNQAMQLLPNRYFELGWMIYNATSSQLHAYLRGITIQMVCITLICTAGFWLAGIDF 235

Query: 241 HVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK-TLR 297
              LG++T ++ +IP  G A      V + LL       +  L L       +VD   + 
Sbjct: 236 APLLGILTGLLNLIPIFGIALAKIPPVLVVLLSDKPDLTSMILALAVVFAAQLVDTAYIL 295

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           P ++     L  +     +       G  GL     L+    VI+ E    +++
Sbjct: 296 PRVIAKSANLHPVTVMLSVSLAGYYFGFTGLIATVPLLFSGKVIFSELFSGLRD 349


>gi|148271920|ref|YP_001221481.1| hypothetical protein CMM_0741 [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147829850|emb|CAN00774.1| conserved membrane protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 385

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 56/336 (16%), Positives = 114/336 (33%), Gaps = 16/336 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q +   ++   I+ +   LK    PV+ ALI+     P+      +        A IA +
Sbjct: 21  QILAVLVVAIAIVYAAISLKLVVIPVIIALILACAVRPMVLWMERR-GLPDALAAAIALL 79

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           + + LF   +  + +    +   LV                            +    + 
Sbjct: 80  TGLVLFGGAITAVVFGVQSQWPTLVKATSEGVDQLQSFIEEGGLPIDSSQIDSIRQSAVD 139

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S +  S      +    +   A              +  ++  FFF +DG  I    
Sbjct: 140 FLTSSQFGSGAIAGVSAAAEVVTGA--------------VLGLVVFFFFVKDGPQIWSFF 185

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        ++     KV+     G   +A+ + + +G+  ++ GVP  + L ++ 
Sbjct: 186 IRPFRGRGRKRAVRVGHEGSKVLGGYIRGTATVALVDTVFIGAGLFILGVPLALPLSLVV 245

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I A +P  GA ++    ++  L+  ++  A  + +       +    L+P ++G  +KL
Sbjct: 246 FIGAFVPIVGATVAGILAALVALVTNDLTTAIIVIIIVVAVNQLEGNLLQPVVLGNALKL 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             L     L  G    G++G  +   L A+    WK
Sbjct: 306 HGLVVLLALTAGTILGGIIGAILSVPLTAVAWTAWK 341


>gi|239623509|ref|ZP_04666540.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521540|gb|EEQ61406.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 379

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 102/325 (31%), Gaps = 14/325 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY-- 84
           +  FF P +   II   + P+      +        +++  V+ + L I  L  +     
Sbjct: 36  ILKFFMPFVIGWIIAMIANPLVRLLERRMRLVRKHSSIVIVVAALALVIGLLYLIISRSF 95

Query: 85  -----GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
                 + ++  L + +       +     +                 +    L  + E 
Sbjct: 96  ALLYGFIKDLPALYAGIEGDVSRSMEQIDHVFQFLPDSIQQTWSEIGNNLGTYLGKVVEG 155

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
                        A           + ++  I++ +FF  D  +I   + S        Y
Sbjct: 156 IASPT-----VEAAGSVARSIPAILVYMVVTILSAYFFIVDRDNILAFVKSHTPAWSQRY 210

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGA 258
              +   V ++I   F+    I     L+L   + + GV        + A +  +P  G 
Sbjct: 211 TSYLKGEVRRLIGGYFMAQFKIMAVVWLILTVGFLVLGVGYAPLWAFLIAFLDFLPVFGT 270

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
             +     +  L+ G    A  L L   +   +  + ++P LVG  + L  L T   L  
Sbjct: 271 GTALIPWGLIKLLGGEYAFAAGLLLIYVLTQ-VTRQLVQPKLVGDSMGLNPLLTLLLLYL 329

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWK 343
           G +  G+ G+ +   +      ++ 
Sbjct: 330 GFKVNGIAGMILAVPIGLFFVSLYD 354


>gi|28210756|ref|NP_781700.1| permease [Clostridium tetani E88]
 gi|28203194|gb|AAO35637.1| permease [Clostridium tetani E88]
          Length = 337

 Score = 74.5 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 55/344 (15%), Positives = 121/344 (35%), Gaps = 13/344 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M +        +   ++  I+ S    +     ++ + +I +   P+    + K      
Sbjct: 1   MDKIYKKIILYVLIGLVIAIIFSNSTFRNILKLIVISFVIAYILKPVKEVLV-KVGIKDG 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             + I   S++ L ++ ++FL      E   ++  +             +  +       
Sbjct: 60  IASFITIFSLIILVVIFVMFLIPSLFRESNNIIVALDRIQMFLDGAYDKIKPLKNNKMGI 119

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           EL     S         +T +    ++   +  S       +  + I  + I  ++F  D
Sbjct: 120 ELLHHIYS-------KVDTIINKTFMNIFDKTVS-----LGENIMDIFIIPIISYYFLVD 167

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I+ +L  L         ++I + + K++    +   I++   G V      L  V  
Sbjct: 168 WKKINSRLIVLFPMKIRTVVQRIMKDIDKILTRYIVVQIILSALIGAVTFIILILLKVDF 227

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + L VI A   +IP   PI  +  +I + +  +   A    +   +   I    + P  
Sbjct: 228 PILLSVINAFFNIIPYFGPILGSIPAILVALTISTKKALWTAICLYLIQQIEGNIISPKF 287

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           +G  I +  L     L+ G    G+LG+ +   L  +I VI+++
Sbjct: 288 IGDNISMHPLLIIILLIIGGELWGVLGMILAIPLGVIIKVIYED 331


>gi|312862745|ref|ZP_07722985.1| putative lipoprotein [Streptococcus vestibularis F0396]
 gi|322516754|ref|ZP_08069662.1| permease [Streptococcus vestibularis ATCC 49124]
 gi|311101605|gb|EFQ59808.1| putative lipoprotein [Streptococcus vestibularis F0396]
 gi|322124713|gb|EFX96160.1| permease [Streptococcus vestibularis ATCC 49124]
          Length = 378

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 107/294 (36%), Gaps = 10/294 (3%)

Query: 61  FLAVIATVSVMCLFIVP-LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
           F  +    + +   ++P L+      + + +  ++ ++        + + + D+ G    
Sbjct: 85  FATIGLVFTWVVFTVLPDLIDSINTLISQDRSAINNLINWLLKNKSLQKVIQDLGGVTQV 144

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            EL   + +      +         G+       +      ++  +S++F    L    +
Sbjct: 145 RELINSYSAQLLQQIM--------TGLTNFLTSLTSLPSTLINLFISVVFSCYVLAGKEK 196

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G  +++ +D          +  +  I+    R+ F+  +I A   G +      +   P
Sbjct: 197 LGNQVNRLVDVYLGRY-GKTFHYVVGILNNRFRNFFVYQSIEACILGTLCYIGMRIFNFP 255

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               + ++    AMIP         +   L++  ++  A     +  I        + P+
Sbjct: 256 YAATISILIGFSAMIPVVGAYIGVTIGTILIMTHSVTLALLFVAYVVILQQFEGNLIYPY 315

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +VGG   LP +   F +  G    G+LG+ +   + A +  I K++++  +E K
Sbjct: 316 VVGGSTGLPGIWVIFAITIGSALAGILGMLVSVPVAATLYQIVKDNVVTREEAK 369


>gi|15805286|ref|NP_293976.1| hypothetical protein DR_0252 [Deinococcus radiodurans R1]
 gi|6457925|gb|AAF09838.1|AE001886_4 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 373

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 54/330 (16%), Positives = 117/330 (35%), Gaps = 21/330 (6%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF--LFYYGMLEMKE 91
              A +I + + P+       +      +  +  + +  L +   L   +    +   + 
Sbjct: 46  FAVAFLIAYLANPLLGWLERGRVRRGLGVFFVLLLFLGLLALAGALVVTVGGQFVQLFQN 105

Query: 92  LVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSH-----PQSLKILSETFLKTN 144
           L +++   N+      +WLS   IPG   A    T+ L         ++  + +  L + 
Sbjct: 106 LPAQIDNLNRILDGAVQWLSGRGIPGLADAQTRMTEALRDWIANIGNNIVPILQNALSST 165

Query: 145 GIDF--IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           G  F  +       G + L   LS+  M+        D   ++  L       +     +
Sbjct: 166 GTLFNRLISIGGVIGQVLLILLLSVYLML--------DYARVNASLLRAFPRPWQPKVLE 217

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS- 261
            S ++   +     G  +IA   G+ +     + G+PS  A+G +     ++P   PI  
Sbjct: 218 FSDLIGTAVGGYVRGQLLIAAFIGIFVWLGLTIVGIPSAAAIGFLAGAFNIVPYLGPIIG 277

Query: 262 -FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
              A+ + L +    F    + +   +   I    L P+++     L  +     ++ GV
Sbjct: 278 ATPALLLALTLPNAGFKMILVVVVFVLANQIEGNFLSPYILSKTTDLHPVTVLLAILVGV 337

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             MG  G  +   L+AL  ++ ++     +
Sbjct: 338 ALMGFAGALLAVPLVALGKLMLEKYYYPSR 367


>gi|291520930|emb|CBK79223.1| Predicted permease [Coprococcus catus GD/7]
          Length = 394

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 114/363 (31%), Gaps = 27/363 (7%)

Query: 11  IMRWMIMFIILVSLYF---------------LKGFFAPVLSALIIGFTSWPI---YSSFI 52
           I+R  ++ I+                        F    + A +I     P+   ++   
Sbjct: 32  IIRAFLLLIVFAWALVNLDAVLRFLGKVLELFNPFLIGGVIAFLINVVLRPLECCWNRVC 91

Query: 53  SKKEES--STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
            K             +TV V+ +    +  +       + E +  + +  +    + RW 
Sbjct: 92  RKAPAKLTRPVCLTASTVLVLGILFAVVFMMIPSLRESVDEFIQNIPVYVEG---IGRWG 148

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
             +        +     +    L I   T L ++    I           L   + ++  
Sbjct: 149 DGVAQFAAKYNIVLPEYAIDSDLLIEKVTALISDEESGILTVTWGAAASVLSVLVEVLLG 208

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKK----ISRIVPKVIRSTFLGMTIIAIGEG 226
           ++   +       ++  L      + P    +    I+ +  +   +   G    A+  G
Sbjct: 209 LVFALYLLAKKEVVAAHLKKFVVTVLPQKKAQCLLSIASLTNQTFTNFVSGQLTEAVIIG 268

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           ++      + G+P   A+    A+ A++P         +  +L++      A    L+  
Sbjct: 269 VLCFFGMLILGLPYAGAISAFVAVTALVPIFGAWIGGGLGAFLILLAEPGKALWFILFLL 328

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           +   +    + P +VG  + LP +     +  G    G+LG+     + A++  ++ E +
Sbjct: 329 VLQQVEGNLIYPKVVGKSVGLPGMLVLMAVTIGGEAFGILGMLFSVPVCAVLFSLYLEFM 388

Query: 347 MAI 349
              
Sbjct: 389 KKA 391


>gi|256006040|ref|ZP_05430976.1| protein of unknown function UPF0118 [Clostridium thermocellum DSM
           2360]
 gi|255989985|gb|EEU00131.1| protein of unknown function UPF0118 [Clostridium thermocellum DSM
           2360]
          Length = 309

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/267 (13%), Positives = 91/267 (34%), Gaps = 11/267 (4%)

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            +  ++  +S +     +   +   LS++ G           LS    L +     L ++
Sbjct: 41  LIKSIQVFLSNMGAYIDNFRDLTNELSELLGLERID------LSSLDKLILEYTNRLGSS 94

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA----YW 200
             + +P+  S      L +  +++  ++   +       +  Q   +     P       
Sbjct: 95  LTELMPKIIS-ITTGVLSFFATLVITVVFSIYILAGKERLIGQCKKVFSTYLPECLYKKG 153

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             + R+V  V      G    A   G +      +      + + V+ A+ A++P     
Sbjct: 154 AYVYRVVVDVFNKYIYGQLAEAFILGSLCFIGMVIFRFEYALLISVLIAVTALVPYFGAY 213

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
                +  LL+  +   A    ++  +   + +  + P +VG  + LP +      + G 
Sbjct: 214 IGGFCAFMLLLMISPTKAIWFLVYLVVLQQLENNLIYPRVVGSSLGLPGIWVVLAAIVGA 273

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIM 347
              G +G+  G  +  ++  + +  ++
Sbjct: 274 GVGGPIGVLTGVPIATVLFTLLRNDVL 300


>gi|313763507|gb|EFS34871.1| conserved hypothetical protein [Propionibacterium acnes HL013PA1]
 gi|313773444|gb|EFS39410.1| conserved hypothetical protein [Propionibacterium acnes HL074PA1]
 gi|313793896|gb|EFS41920.1| conserved hypothetical protein [Propionibacterium acnes HL110PA1]
 gi|313801287|gb|EFS42538.1| conserved hypothetical protein [Propionibacterium acnes HL110PA2]
 gi|313808034|gb|EFS46515.1| conserved hypothetical protein [Propionibacterium acnes HL087PA2]
 gi|313811497|gb|EFS49211.1| conserved hypothetical protein [Propionibacterium acnes HL083PA1]
 gi|313813443|gb|EFS51157.1| conserved hypothetical protein [Propionibacterium acnes HL025PA1]
 gi|313816689|gb|EFS54403.1| conserved hypothetical protein [Propionibacterium acnes HL059PA1]
 gi|313819600|gb|EFS57314.1| conserved hypothetical protein [Propionibacterium acnes HL046PA2]
 gi|313822075|gb|EFS59789.1| conserved hypothetical protein [Propionibacterium acnes HL036PA1]
 gi|313823691|gb|EFS61405.1| conserved hypothetical protein [Propionibacterium acnes HL036PA2]
 gi|313826015|gb|EFS63729.1| conserved hypothetical protein [Propionibacterium acnes HL063PA1]
 gi|313829484|gb|EFS67198.1| conserved hypothetical protein [Propionibacterium acnes HL063PA2]
 gi|313831238|gb|EFS68952.1| conserved hypothetical protein [Propionibacterium acnes HL007PA1]
 gi|313834850|gb|EFS72564.1| conserved hypothetical protein [Propionibacterium acnes HL056PA1]
 gi|313839990|gb|EFS77704.1| conserved hypothetical protein [Propionibacterium acnes HL086PA1]
 gi|314914806|gb|EFS78637.1| conserved hypothetical protein [Propionibacterium acnes HL005PA4]
 gi|314919378|gb|EFS83209.1| conserved hypothetical protein [Propionibacterium acnes HL050PA1]
 gi|314920714|gb|EFS84545.1| conserved hypothetical protein [Propionibacterium acnes HL050PA3]
 gi|314924725|gb|EFS88556.1| conserved hypothetical protein [Propionibacterium acnes HL036PA3]
 gi|314930594|gb|EFS94425.1| conserved hypothetical protein [Propionibacterium acnes HL067PA1]
 gi|314954451|gb|EFS98857.1| conserved hypothetical protein [Propionibacterium acnes HL027PA1]
 gi|314957522|gb|EFT01625.1| conserved hypothetical protein [Propionibacterium acnes HL002PA1]
 gi|314961996|gb|EFT06097.1| conserved hypothetical protein [Propionibacterium acnes HL002PA2]
 gi|314963749|gb|EFT07849.1| conserved hypothetical protein [Propionibacterium acnes HL082PA1]
 gi|314974114|gb|EFT18210.1| conserved hypothetical protein [Propionibacterium acnes HL053PA1]
 gi|314976596|gb|EFT20691.1| conserved hypothetical protein [Propionibacterium acnes HL045PA1]
 gi|314978949|gb|EFT23043.1| conserved hypothetical protein [Propionibacterium acnes HL072PA2]
 gi|314986608|gb|EFT30700.1| conserved hypothetical protein [Propionibacterium acnes HL005PA2]
 gi|314990965|gb|EFT35056.1| conserved hypothetical protein [Propionibacterium acnes HL005PA3]
 gi|315079597|gb|EFT51590.1| conserved hypothetical protein [Propionibacterium acnes HL053PA2]
 gi|315081174|gb|EFT53150.1| conserved hypothetical protein [Propionibacterium acnes HL078PA1]
 gi|315083636|gb|EFT55612.1| conserved hypothetical protein [Propionibacterium acnes HL027PA2]
 gi|315087056|gb|EFT59032.1| conserved hypothetical protein [Propionibacterium acnes HL002PA3]
 gi|315089231|gb|EFT61207.1| conserved hypothetical protein [Propionibacterium acnes HL072PA1]
 gi|315095253|gb|EFT67229.1| conserved hypothetical protein [Propionibacterium acnes HL038PA1]
 gi|315099135|gb|EFT71111.1| conserved hypothetical protein [Propionibacterium acnes HL059PA2]
 gi|315100382|gb|EFT72358.1| conserved hypothetical protein [Propionibacterium acnes HL046PA1]
 gi|315106803|gb|EFT78779.1| conserved hypothetical protein [Propionibacterium acnes HL030PA1]
 gi|315108932|gb|EFT80908.1| conserved hypothetical protein [Propionibacterium acnes HL030PA2]
 gi|327328484|gb|EGE70246.1| hypothetical protein HMPREF9338_01501 [Propionibacterium acnes
           HL096PA2]
 gi|327329650|gb|EGE71406.1| hypothetical protein HMPREF9337_01714 [Propionibacterium acnes
           HL096PA3]
 gi|327334165|gb|EGE75879.1| hypothetical protein HMPREF9344_01066 [Propionibacterium acnes
           HL097PA1]
 gi|327444271|gb|EGE90925.1| hypothetical protein HMPREF9571_02402 [Propionibacterium acnes
           HL043PA2]
 gi|327444849|gb|EGE91503.1| hypothetical protein HMPREF9570_01911 [Propionibacterium acnes
           HL043PA1]
 gi|327446335|gb|EGE92989.1| hypothetical protein HMPREF9568_00917 [Propionibacterium acnes
           HL013PA2]
 gi|327452077|gb|EGE98731.1| hypothetical protein HMPREF9584_02283 [Propionibacterium acnes
           HL092PA1]
 gi|327454886|gb|EGF01541.1| hypothetical protein HMPREF9581_01074 [Propionibacterium acnes
           HL087PA3]
 gi|327457829|gb|EGF04484.1| hypothetical protein HMPREF9586_00405 [Propionibacterium acnes
           HL083PA2]
 gi|328752324|gb|EGF65940.1| hypothetical protein HMPREF9563_02358 [Propionibacterium acnes
           HL020PA1]
 gi|328755281|gb|EGF68897.1| hypothetical protein HMPREF9579_01308 [Propionibacterium acnes
           HL087PA1]
 gi|328758238|gb|EGF71854.1| hypothetical protein HMPREF9588_00878 [Propionibacterium acnes
           HL025PA2]
 gi|328760013|gb|EGF73596.1| hypothetical protein HMPREF9343_02296 [Propionibacterium acnes
           HL099PA1]
          Length = 404

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 107/336 (31%), Gaps = 28/336 (8%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFF-------APVLSALIIGFTSWPIYSSFISKK 55
           E   +  G+ +  I+ + + + +    F        AP+   L +  T++PI++  +  K
Sbjct: 49  EVATSKHGLPKLTIVLLTVAAAWLGLSFLHELSSVVAPLFFGLNLLITAYPIHTWLVKHK 108

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
                  A  A  +V+ +    ++ + +     + +L S                  IP 
Sbjct: 109 CPR-WISATTAGTAVIVVLAAGVVGMVWSVAAMINQLQSY-----------------IPQ 150

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
                       +     + +    LK      +    +            II ++  + 
Sbjct: 151 MEKIYTQLLHWSTQLGYSQDVIADKLKKIDPQQVMSVVTSVASDTTSVVTMIIVILTGMI 210

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F   D   +  +L   G                  IR  +L  T+  +   L   +A  +
Sbjct: 211 FMVMDTPQMHDRLRMAGSRKPDVVLA--LESFASGIRKYWLVTTVFGLIVALFDWAALLI 268

Query: 236 AGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
            GVP      + + +   IP  G  I     ++  L K     A  + +  ++  F++  
Sbjct: 269 IGVPLAGVWALFSFLTNYIPNIGFIIGVIPPALLALFKDGWVAAVAVVVSYSVLNFVIQS 328

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            ++P   G  + L    +F  L+      G LG  I
Sbjct: 329 IIQPKFAGDAVGLTPTMSFVSLLLWGWVFGALGTLI 364


>gi|167747388|ref|ZP_02419515.1| hypothetical protein ANACAC_02107 [Anaerostipes caccae DSM 14662]
 gi|167653366|gb|EDR97495.1| hypothetical protein ANACAC_02107 [Anaerostipes caccae DSM 14662]
          Length = 387

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/327 (14%), Positives = 110/327 (33%), Gaps = 12/327 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSF----------ISKKEESSTFLAVIATVSVMCLFIVPLLF 80
             P     +I +   P+ + F            +K        +   + ++    + L+F
Sbjct: 50  IFPFFIGFLIAYVMNPVVTFFNEKVFSSLFGEKRKRLCRACAILTTYIILVGALTICLIF 109

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           +       +KEL S++ + +   + +     +   G++ +EL     +      +     
Sbjct: 110 IVPQLYDSIKELSSQIPVISDQIMGLLDHYKESGSGVFPAELMETLETKSLPKLVQLSNQ 169

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           + T  I  +  F+  F     +  ++ +  I           +  + + ++  +      
Sbjct: 170 MLTEAIPMLYNFSVSFVKWLFNLFIAFVVSIYMTADKQLLKSACRRLIFAVFPYDAAVPV 229

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAP 259
               +    +     +G ++ ++  G +      L  +P  V + VI  +  MIP  G  
Sbjct: 230 IHGLKECHNIFSGYIIGKSLDSLIIGFLCFLLMSLLNLPYTVLISVIVGVTNMIPYFGPF 289

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           I     +  L I         L +   ++ F     L P ++G    +  +   F +  G
Sbjct: 290 IGAVPGAFILFIVSPYKTLIFLGMILVLQQFDG-LVLGPKILGNSTGVRPILILFSITVG 348

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESI 346
               G LG+F+G    A++  +    +
Sbjct: 349 GAYFGPLGMFLGVPFFAVVQYLVNNWV 375


>gi|292559015|gb|ADE32016.1| probable permease [Streptococcus suis GZ1]
          Length = 376

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 52/337 (15%), Positives = 121/337 (35%), Gaps = 7/337 (2%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L G    +    I  F           + E+ S       +++++ + I   L +    +
Sbjct: 35  LLGSMNSLFIGAIFAFILNVPMKKLEDQFEKISFLKKSKRSLAIVGVLIGFALIVTGLVV 94

Query: 87  LEMKELVSKVV-LANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS--LKILSETFLKT 143
           + +  LV+ V  L +     +P+ ++ +   + ++ L +  +    +  L  L    L +
Sbjct: 95  IVLPTLVTTVSELVSVSSTAIPKSVNALTNFLESNGLLSGQIGDQIASFLDQLKNLTLIS 154

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           + +  I               +++I               +        +   P    ++
Sbjct: 155 SLVTPILSGLVSNVTGIFSNTMTLIMAFFFTLAILGSKEHLQAMTRKFLQATLPEKAVRV 214

Query: 204 SRIVPKVIRST----FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
              + +VI  T     +   + A   G ++  +Y L+G+P     G++  +++ +P   P
Sbjct: 215 VNYIGEVIVDTYDRFLMSQIVEACIIGTLVFVSYSLSGIPYASMAGILAGVLSFVPYIGP 274

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
            S   +S   +   N   A        I   I    + P +VG  + LP L T    + G
Sbjct: 275 FSACLISALFVAVQNPLLALWSIALFQIIQLIEGNVIYPRVVGQSVGLPTLFTLAAALIG 334

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
               GLLG+     + A++  + +E + +  + + ++
Sbjct: 335 GNLFGLLGMVFFTPIFAVVYRLVREWVASRLKKQGEL 371


>gi|167855508|ref|ZP_02478271.1| putative permease perM-like protein [Haemophilus parasuis 29755]
 gi|167853374|gb|EDS24625.1| putative permease perM-like protein [Haemophilus parasuis 29755]
          Length = 354

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 51/338 (15%), Positives = 109/338 (32%), Gaps = 13/338 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +PQ +    I+ I   ++YF      P+L A++  +   WPI     +K +       VI
Sbjct: 15  DPQIVALLAILIIGFGTIYFFSDLLMPLLIAIVFAYLLEWPI-RFLTTKLKLPRMLSLVI 73

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
                + L +   + +      +    +  +         +  WL  +P        +  
Sbjct: 74  VLGGFISLSVFLFVVMLPSLWNQAVTFLKDLPSMFNL---LNAWLEALPEHYPELIDYAM 130

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S   + K    TF  +          S  G+    + + ++      FF  +D     
Sbjct: 131 LDSLMATAKTKILTFGDSLLSFSFNSLVSLVGLGIYAFLVPLMV-----FFLLKDKTLFM 185

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +               ++   +   I +   G  +  +  G+V    +    +   + L 
Sbjct: 186 RSALRFMPK-NRHLATRVWGEMQLQIANYIRGKFLEILIVGVVTYIIFLFFDLRYPLLLS 244

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGG 303
           V   +  ++P  GA +    V++  L +  +       L   +   ++D   + PFL   
Sbjct: 245 VAVGLSVLVPYIGAVLVTIPVALVALFQFGLSPDFYYLLLAFVISQLLDGNLVVPFLFSE 304

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            + L  L     ++      G  G+F    L  L+  +
Sbjct: 305 AVNLHPLTIIVAVIIFGGLWGFWGVFFAIPLATLVKAV 342


>gi|314984415|gb|EFT28507.1| conserved hypothetical protein [Propionibacterium acnes HL005PA1]
          Length = 404

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 107/336 (31%), Gaps = 28/336 (8%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFF-------APVLSALIIGFTSWPIYSSFISKK 55
           E   +  G+ +  I+ + + + +    F        AP+   L +  T++PI++  +  K
Sbjct: 49  EVATSKHGLPKLTIVLLTVAAAWLGLSFLHELSSVVAPLFFGLNLLITAYPIHTWLVKHK 108

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
                  A  A  +V+ +    ++ + +     + +L S                  IP 
Sbjct: 109 CPR-WISATTAGTAVIVVLAAGVVGMVWSVAAMINQLQSY-----------------IPQ 150

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
                       +     + +    LK      +    +            II ++  + 
Sbjct: 151 MEKIYTQLLHWSTQLGYSQDVIADKLKKIDPQQVMSVVTSVASHTTSVVTMIIVILTGMI 210

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F   D   +  +L   G                  IR  +L  T+  +   L   +A  +
Sbjct: 211 FMVMDTPQMHDRLRMAGSRKPDVVLA--LESFASGIRKYWLVTTVFGLIVALFDWAALLI 268

Query: 236 AGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
            GVP      + + +   IP  G  I     ++  L K     A  + +  ++  F++  
Sbjct: 269 IGVPLAGVWALFSFLTNYIPNIGFIIGVIPPALLALFKDGWVAAVAVVVSYSVLNFVIQS 328

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            ++P   G  + L    +F  L+      G LG  I
Sbjct: 329 IIQPKFAGDAVGLTPTMSFVSLLLWGWVFGALGTLI 364


>gi|325110550|ref|YP_004271618.1| hypothetical protein Plabr_4019 [Planctomyces brasiliensis DSM
           5305]
 gi|324970818|gb|ADY61596.1| protein of unknown function UPF0118 [Planctomyces brasiliensis DSM
           5305]
          Length = 523

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 89/247 (36%), Gaps = 15/247 (6%)

Query: 103 GIPVPRWLSDIPGGMWASELWT-KHLSHPQSLKILSETFLKTNGIDFIPRFASR----FG 157
           G   P W ++ P     ++L   K++  PQ +K+   T        +     +       
Sbjct: 246 GESAPEWPAEDPTLEDQTDLMEPKYIFEPQIIKLDPSTASSQVRQRYGGVLGAYSPVEIF 305

Query: 158 MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI--VPKVIRSTF 215
             FLD  L +    + +F           +     E L       IS++  +   IR   
Sbjct: 306 RSFLDSVLGVFNYTLIVFLMLAFLLLEWSRFGQKLERLPGNTQSHISQVTQILDSIRRYM 365

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV-SIYLLIKGN 274
              T++++  GL++     L G    +  G +  +   IP    I    V ++++L+   
Sbjct: 366 FIKTLVSLLTGLLVTIWLMLLGTNYAILWGTVAFLFNYIPTIGSIIAGIVPTLFVLVDQG 425

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
             +A  + +   +  F+V   L P ++G  + L     F  LV         G  +GPV 
Sbjct: 426 PVDAAAVGVAFLVVNFLVGNVLEPRIMGEGLGLSTFVVFLSLV-------FWGFVLGPVG 478

Query: 335 MALIAVI 341
           M L   +
Sbjct: 479 MLLAVPL 485


>gi|221134612|ref|ZP_03560915.1| putative permease [Glaciecola sp. HTCC2999]
          Length = 356

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 58/325 (17%), Positives = 107/325 (32%), Gaps = 12/325 (3%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +  PVL A+++ +           K   S T    I  V  + + ++  L L      + 
Sbjct: 38  YIMPVLIAIVLAYLLDSSVGQLE-KLNLSRTLATTIVMVLFIGISLIGTLSLLPTISKQS 96

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             LV ++ L  Q       WL  +P   +   L T+ ++        S   +  N I   
Sbjct: 97  VNLVEELPLIWQG---AQAWLLTLPE-QYPELLHTEQITSMMGKVNESLVGITQNIISVS 152

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                  G       + +I + + +FF  +D       L  L        + ++   +  
Sbjct: 153 FSSLVSVGA----LLIYLILVPLMMFFMLKDKPLFMDNLSYLLPKERRLIY-QVGSEMNT 207

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIY 268
            I +   G  I  +  G     A+ L  +   + LGV+  +  +IP  GA +    V+  
Sbjct: 208 QIGNYIRGKVIEILIVGAASCIAFVLMDLRYAILLGVLVGLSVLIPYIGAAVVTIPVAFV 267

Query: 269 LLIKGNIFNATC-LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            L +         L L   I   +    + P L    + L  L     ++      G  G
Sbjct: 268 ALFQWGFSAEFGYLMLVYFIIQALDGNLIVPILFSEAVALHPLYIIIAVLFFGGIWGFWG 327

Query: 328 LFIGPVLMALIAVIWKESIMAIKEN 352
           +F    L  L+  +       + E+
Sbjct: 328 VFFAIPLATLVKALISAWSNDLDED 352


>gi|218440376|ref|YP_002378705.1| hypothetical protein PCC7424_3442 [Cyanothece sp. PCC 7424]
 gi|218173104|gb|ACK71837.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7424]
          Length = 397

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 53/303 (17%), Positives = 103/303 (33%), Gaps = 15/303 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL---FYYGML 87
           F  +L A ++ F      +   SK  + S    V+   +V+    V L  +   +     
Sbjct: 55  FVIILLASVVAFLLSYPVNWLESKGVKRSQAAIVVFLFTVLTFLAVGLTLVPVAYTQAQQ 114

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            +  L   +       + +   + +    +    L  +  S   +           +   
Sbjct: 115 LVARLPEWLDSGQHQLMMLNERVDEWGLPLSLDGLIAQINSRLAAEL--------QSLAG 166

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
                A    +  +   L ++  II  F+       I Q L           + +  R  
Sbjct: 167 RTLNIAVSLTVFTVVKLLDVLLTIILTFYLLLHSRDIWQSLIEWLPKPIQRPFSQTLR-- 224

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
               ++ FLG  I A    + L   + L  VP  +  G+   +MA+IP G  +    V++
Sbjct: 225 -SSFQNYFLGQIISATCMAVGLTGGFLLLKVPFGLLFGLSIGLMALIPFGGSVGIVTVTL 283

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            L+   ++  A  +     +   IV+  + P ++G    L        L+ G R  GLLG
Sbjct: 284 -LIALRDVGLALQVLASALVVQQIVENGIAPRILGSVTGLNPFWILLALLSGARIGGLLG 342

Query: 328 LFI 330
           + +
Sbjct: 343 VIV 345


>gi|17230438|ref|NP_486986.1| hypothetical protein alr2946 [Nostoc sp. PCC 7120]
 gi|17132040|dbj|BAB74645.1| alr2946 [Nostoc sp. PCC 7120]
          Length = 367

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/321 (15%), Positives = 111/321 (34%), Gaps = 15/321 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           ++     + +      + A+++ F   +P+  S + K+    +    +  V  + + I  
Sbjct: 27  LVFAFFQYFQPLVTIFVLAILLAFVLNYPV--SALQKRGIKRSNAVGLVFVLTVIILIAS 84

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
            + L    + +  E+   + L         + L+D   G        + L+         
Sbjct: 85  GVTLLPIAIEQFHEIAKILPLWIDSSQEKLQNLNDWAIGQHFKLNIGQILTRIIDKIPDE 144

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              +       I                  I  ++  F+   DG  I + +    + L  
Sbjct: 145 LESVSNQTFKIIVETVDSISEA--------IVTVVITFYLLVDGQRIWEGI---FKKLPM 193

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
           +  +K+ + + K  ++  +G   +A+  G      +    V   +  G+    +++IP G
Sbjct: 194 SLAQKLKQSIQKNFQNYLIGQGTLALLMGTSQTLLFLAFQVQFGLLFGLGVGFLSLIPFG 253

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
             +    V   ++   + + A  +     +   I+D+ + P L+G    L  +     L+
Sbjct: 254 D-VVSLIVITLIVATHDFWLALKILAVAVVIDQIIDQAIAPRLLGSFTGLRPIWVLVSLL 312

Query: 318 GGVRTMGLLGLFIGPVLMALI 338
            G    GLLGL I   +  LI
Sbjct: 313 VGTYIGGLLGLLIAVPVAGLI 333


>gi|255002913|ref|ZP_05277877.1| permease perM-like protein (perM) [Anaplasma marginale str. Puerto
           Rico]
 gi|255004041|ref|ZP_05278842.1| permease perM-like protein (perM) [Anaplasma marginale str.
           Virginia]
          Length = 439

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/344 (12%), Positives = 109/344 (31%), Gaps = 11/344 (3%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA-----TVSVMCLFI 75
            V ++ ++        A ++ +   P+ +   S           I        + + +F+
Sbjct: 91  AVLVFVMRPVLPLCCVAAVLAYLLNPLVNRLESIGLPRPVSSFAIIFSSVGVFAALLVFL 150

Query: 76  VPLL----FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
           VP+           +++         + N            + G M    L   +L    
Sbjct: 151 VPIAYSQTLALAKLLVDKLPFAGVEGIKNALLAYDMLRYDGVIGAMNPEALSPHNLFSGN 210

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            ++ +            +     + G+        +   ++ LF+       + +    +
Sbjct: 211 HVEFIKLLDGLYKNFIKVAVGVVQSGVGIGTIAAKVFITLLLLFYILGSWPIVVKNALLM 270

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +   +      +  ++ +   G T + +   +     + + G+   + LGVI+ IM
Sbjct: 271 VPRHYLEGFSHCMSKIDSIVSAYIRGQTTVCLIMLIYYCICFAVVGLEYSLVLGVISGIM 330

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--DKTLRPFLVGGPIKLPF 309
             IP   PI   ++   L I  +        +     +  V     + P L+   + L  
Sbjct: 331 TFIPYIGPILCASLGACLAILQDFSWTGTAAVILVFVVGNVVESNIITPVLLSKKLDLNP 390

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                G+V      GLLG  +   + A+++V+   ++   K + 
Sbjct: 391 GWVVIGMVVFSAHAGLLGALVSIPVTAIVSVLTHFAVEKYKHSN 434


>gi|297587472|ref|ZP_06946116.1| MFS superfamily major facilitator transporter, macrolide symporter
           [Finegoldia magna ATCC 53516]
 gi|297574161|gb|EFH92881.1| MFS superfamily major facilitator transporter, macrolide symporter
           [Finegoldia magna ATCC 53516]
          Length = 381

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/330 (13%), Positives = 109/330 (33%), Gaps = 5/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +  F      A ++      I +    K          I+ +  + +    + F+    
Sbjct: 44  IISPFIIGAALAFVLNMPMNFIENKLFKKWTSKPGLKRAISLLISLVIVSAIIAFVVILI 103

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +    E +  ++      +   R   +I          T  ++    L +  + +L  NG
Sbjct: 104 IPNFFEAIKSLIRGIPVLVEKLRKYPEI-AKQLDKIYDTYAITSTHDLVVKLKPYLTKNG 162

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS- 204
           +D +         +F      ++    A++  +       Q  +           K+I  
Sbjct: 163 LDILNNVFFGISTVFSVVLSFVVSFTFAIYLLFSKETLRRQFTELTYVFFSGKTAKRIIV 222

Query: 205 --RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             ++  +   S F G  I A   G +     +L  +P+   + V+    A+IP    I  
Sbjct: 223 FFKVAYEKFYSFFKGQFIEAFMLGFMCFIGMYLLKMPNAATVSVLIGFGALIPLVGAILG 282

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
            A+   +++  +   A    ++  +          P +VG  + LP +     +  G   
Sbjct: 283 AALGALIILIESFSKAIMFVIFIIVLQQFDGNVTYPRIVGSSVGLPSIWVLVAVTIGAAL 342

Query: 323 MGLLG-LFIGPVLMALIAVIWKESIMAIKE 351
            G++G L   P+   +  ++++     +K+
Sbjct: 343 SGIVGMLIFVPIFATIYELLYRYKEKKLKD 372


>gi|298491600|ref|YP_003721777.1| hypothetical protein Aazo_2806 ['Nostoc azollae' 0708]
 gi|298233518|gb|ADI64654.1| protein of unknown function UPF0118 ['Nostoc azollae' 0708]
          Length = 372

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 112/331 (33%), Gaps = 12/331 (3%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + + L  L+ L+     + +A+++  T   +  SF S           ++        I 
Sbjct: 12  LVLSLYILWQLREVLLLIFAAVVLATTLNRLARSFQS-LGMKRGLAVFLSVSIFFAGVIG 70

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
               +      + +EL  +V    +    +  W+ +        E     +     L   
Sbjct: 71  FFWLIVPPFTQQFQELTLRVPQGFER---INTWVDE--QRTQIPEQLVPFIPDLNGLIAE 125

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           ++        + +   +  F    L   L+I+ +++    F  +  +  +    L    +
Sbjct: 126 AQPLF-----NRVLGNSFAFVSGSLVIVLNILLVLVLTGMFLANPNAYRKVFVRLFPSFY 180

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               + I       +     G  I     GL+      + GV + +ALGV+   M +IP 
Sbjct: 181 RRRVEGILSQCEISLERWVTGAFIAVCVVGLMSMVGLSILGVKAALALGVLAGFMNLIPN 240

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             P      ++ + +  + +    + +            + P ++   + L    T    
Sbjct: 241 LGPTMSVVPAMAIALLDSPWKPILVLILYFFIQQTESNFITPVVMAHQVSLLPAVTLVSQ 300

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           +  V   G LGLF+  + + ++A IW E ++
Sbjct: 301 LFFVTFFGFLGLFLA-LPLTVVAKIWVEEVL 330


>gi|288557140|ref|YP_003429207.1| hypothetical protein BpOF4_21599 [Bacillus pseudofirmus OF4]
 gi|288548434|gb|ADC52315.1| conserved sporulation related membrane protein [Bacillus
           pseudofirmus OF4]
          Length = 323

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 53/319 (16%), Positives = 112/319 (35%), Gaps = 3/319 (0%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P++ A +      PI      ++ +    + +I T  +  + ++  + +     + + E 
Sbjct: 4   PLVFAWLSAVLLSPIVRLLEKRRIKHDVAVVIIFTSFLTFISLI-GVLVITKIFMHINEF 62

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
           V        H       +       +              +    E+             
Sbjct: 63  VQNAPTYLNHVTNAWVVIQYDFERKFEDLPPDFVNEINFHVINTLESTRIHLSNIDFIGG 122

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
            S F +    Y +S +  +IALF F  D  ++  +  S            +   + KV+ 
Sbjct: 123 VSNFIVGIPSYLVSFLVYLIALFLFLLDLPTLKSKFYSFLTADTSNKLTYMLSRLRKVLI 182

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI 271
             F    I++I   ++             + + ++   + ++P  G+ I     + Y  I
Sbjct: 183 GFFKAQFIVSIPIFILSYIGLLFIYPDIALIMALVIWFIDLVPLIGSIIILGPWAFYQFI 242

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
            G+   A  L +  A+ L ++ +T+ P ++G  I L  L T   L  G+   G +GL +G
Sbjct: 243 IGDTELAIKLTIL-AVVLLVIRRTVEPKIMGNQIGLSPLATLIALYLGLVLFGAIGLILG 301

Query: 332 PVLMALIAVIWKESIMAIK 350
           P+L+       +  I+  K
Sbjct: 302 PLLVITFKSTREAGIIKWK 320


>gi|237742379|ref|ZP_04572860.1| permease [Fusobacterium sp. 4_1_13]
 gi|229430027|gb|EEO40239.1| permease [Fusobacterium sp. 4_1_13]
          Length = 344

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/327 (12%), Positives = 118/327 (36%), Gaps = 8/327 (2%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           K +F  ++ ++ I     PI      K + +      ++   V+ +F + L  +    ++
Sbjct: 19  KDYFMTIIMSIFIAILLEPIVKYLKKKSKINDILAISLSIAFVVLIFAI-LSLIVIPEII 77

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
              ++++ +               ++   +    ++T ++    S          TN   
Sbjct: 78  SSLKVLNNIYPYISEKATTMG--KNLVNYLAEKNIYTVNMDEVNSYFTNFIANNVTNIRK 135

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP----AYWKKI 203
            +           + +  ++    +  F    D   +++ L+++   +F      Y    
Sbjct: 136 IVSALFGSLVDWTIGFT-NLFLAFVLAFLILLDKKHLTKTLENIIIIIFGVKNTPYIMNK 194

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
            ++  ++  +   G  I++   GL +     + G P      V+  +  MIP    I   
Sbjct: 195 LKLSKEIFLNYVSGKLIVSAIVGLCVYIVLLVTGTPYAALSAVLLGVGNMIPYVGSIIGG 254

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
            ++ +L++         L +   I   +    + P ++G  + L        ++      
Sbjct: 255 IIAFFLILLVAPIKTIVLLIAITISQLVDGFIVGPKIIGNKVGLNTFWVMVSMIIFGNLF 314

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIK 350
           G++G+F+G  ++++I + + + + A +
Sbjct: 315 GIVGMFLGTPILSIIKLFYVDLLKAKQ 341


>gi|282896546|ref|ZP_06304566.1| Protein of unknown function UPF0118 [Raphidiopsis brookii D9]
 gi|281198652|gb|EFA73533.1| Protein of unknown function UPF0118 [Raphidiopsis brookii D9]
          Length = 376

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 51/314 (16%), Positives = 121/314 (38%), Gaps = 19/314 (6%)

Query: 31  FAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
              ++ A ++ F   +PI  +++ K+      +AV+  +  + + +   + LF   + + 
Sbjct: 32  IVILVGASVLAFLLNYPI--TWMQKQGARREQVAVLVFLIALSILLALGVTLFPLALTQA 89

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK--TNGID 147
           ++LV+++          P W+      +       + +  P +L  +         + + 
Sbjct: 90  RQLVNRL----------PEWIDSGRSQLMILNEKAEMMGLPINLDAIVVQINDRVKSQLQ 139

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            I        ++ +   L  +  ++  F+  + G  + Q L     + F   + +  R+ 
Sbjct: 140 AITAQVLNLAVVTVTSLLDFLLTMVLTFYLLQHGDELWQSLVEWLPNKFREPFSRTVRL- 198

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
               ++ F+   I++      L  ++    VP  +  G+   IMA+IP G      A++ 
Sbjct: 199 --SFQNFFITQLILSTCMASALIPSFLWLKVPYGLLFGLTIGIMALIPFGGS-VGIAITT 255

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            L+   +I     +     I   I++  L P ++G    L  +     ++ G R  GLLG
Sbjct: 256 LLVSLQDISMGVRVLAAAVIVQQILENILAPRILGNFTGLNPVWVLISVLTGARVGGLLG 315

Query: 328 LFIGPVLMALIAVI 341
           + +      +I  +
Sbjct: 316 VIVAVPCAVVIKTV 329


>gi|184201420|ref|YP_001855627.1| hypothetical protein KRH_17740 [Kocuria rhizophila DC2201]
 gi|183581650|dbj|BAG30121.1| hypothetical membrane protein [Kocuria rhizophila DC2201]
          Length = 455

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 68/352 (19%), Positives = 116/352 (32%), Gaps = 18/352 (5%)

Query: 13  RWMIMFIILVSLYFLKG----FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           R +++   +  +++L G       PVL A +I     P     +          A+ A  
Sbjct: 47  RVLLIVAGVGVVWWLLGHVTTVLIPVLLAALIAGPLSPA----VRWLRARHFPSALAAIT 102

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
                  V L  +     L +      VV   Q           + G +  S L     S
Sbjct: 103 -------VELGLILVVLGLLVLSGQQIVVGFAQLSDKAVAGFQKLLGMLEDSPLKLTTDS 155

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             Q    L  T       + I   A  FG          I M+  L FF  DG +I   L
Sbjct: 156 MSQWFSELGNTL--QENSNAILSGAMTFGSTAGSILTGTILMLFVLLFFLFDGENIWLFL 213

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L      A      R     +         +A  + L +G   +L GVP  + +GV+ 
Sbjct: 214 VKLFPRRARAAVNGAGRRGWISLAQYVRIQVFVAFVDALGIGLGAFLLGVPLALPIGVLV 273

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + + IP  GA ++     +  L+  +   A  +     +   I    L+P ++G  + L
Sbjct: 274 FLASFIPIVGAVVTGAVAVLVALVAVSPGIALAMLGVVLLVQQIESNILQPLIMGKAVSL 333

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             +     +  G    G++G      +MA    I +       E+ ++I+  
Sbjct: 334 HPVAVLLAVATGSMLFGIVGALFAVPVMAFANTIVRYLAARSWEHDDQIAWE 385


>gi|15894017|ref|NP_347366.1| permease [Clostridium acetobutylicum ATCC 824]
 gi|15023611|gb|AAK78706.1|AE007588_4 Predicted permease [Clostridium acetobutylicum ATCC 824]
 gi|325508144|gb|ADZ19780.1| permease [Clostridium acetobutylicum EA 2018]
          Length = 383

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 81/201 (40%)

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
           A+ F    +++ LS IF I  L    + G  +   L +  +        ++ ++      
Sbjct: 178 ATTFASTAIEFVLSFIFSIYILAQKNKLGTQVKMVLYAFFKKQKVDSALEVLKLTSNTFS 237

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
           +   G   ++I  G++      +  +P  + + +I A  ++IP    I    +S+ LL+ 
Sbjct: 238 NFITGQCTVSIILGVMFFIVMTILKLPYAIEVSIIIAFFSVIPMIGSIIGFVLSVLLLLI 297

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
            N   A            + D  + P +VG  + LP +     +  G + +G+ G+ +  
Sbjct: 298 FNPIKAGVFVFVFLAIKQVEDNFIYPKIVGNSVGLPSILVLVAITLGGKVLGVPGMIMSI 357

Query: 333 VLMALIAVIWKESIMAIKENK 353
            L ++  V+ ++ +    E K
Sbjct: 358 PLFSVAYVLLRKEVYTRLEKK 378


>gi|258652641|ref|YP_003201797.1| hypothetical protein Namu_2437 [Nakamurella multipartita DSM 44233]
 gi|258555866|gb|ACV78808.1| protein of unknown function UPF0118 [Nakamurella multipartita DSM
           44233]
          Length = 386

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/363 (13%), Positives = 111/363 (30%), Gaps = 21/363 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLY--------FLKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           L+ + I    I  +++VS +         ++ F   +L A +      P    F+ +   
Sbjct: 24  LDQREIQAATIRILVIVSAWLIAAWVVGVVQHFLFLILLAWLAAIAMEPAIRWFLRR-GV 82

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
             T       V V+ + +  ++        +   LV             P  +  I   +
Sbjct: 83  RRTRATAAVAVPVVLIAVGLVVTFEQMLFEQTAALVRSA----------PDRVQSIVDQL 132

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
            ++       S       L    ++    D         G         ++ + +  F+ 
Sbjct: 133 NSTFGLNLQASQIIVTLRLEPDQIQGVANDLALGALGWLGS-LASVVFDLVTVAVFTFYI 191

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
              G  + Q++              I  I  +          ++A    +  G  +W  G
Sbjct: 192 AAAGPRLVQEVAVWLPPERQPILGAIWDIAEQKTGGYVASKIVLAALSAVFHGIFFWAVG 251

Query: 238 VPSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           +P  + L ++  I A  +P        A  + + +      A  + L+  +   I    L
Sbjct: 252 LPGWLPLALLAGITAQFVPVIGTYIGVAAPMIVALADQPITAVWILLFAIVYQQIETYVL 311

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            P +    +++        +  G    G +G  IG  + A++  + +      +   E  
Sbjct: 312 TPRISRRTMEVNPAIALAAVFVGAAIWGPIGAIIGVPIAAVVVSVVQTYGRRYELVPELA 371

Query: 357 SSN 359
           +++
Sbjct: 372 ATD 374


>gi|300024350|ref|YP_003756961.1| hypothetical protein Hden_2844 [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299526171|gb|ADJ24640.1| protein of unknown function UPF0118 [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 357

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 54/333 (16%), Positives = 112/333 (33%), Gaps = 9/333 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +   + L     L     P +  L++ +   P+  +   +        +++    V+ L
Sbjct: 11  IVTAVVFLYLAQLLAPVLLPFVIGLVLAYFFNPVVDAL-RRLGIPRWASSILLLALVLFL 69

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            ++ L+FL    + +   LV       +    +    +    G    E      S   S 
Sbjct: 70  IVLALVFLVPILVQQAAGLVEAAPRQIERIKLMIETSARDYLGTRYPEAEATVRSALDSF 129

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                +F+       + +     G    ++   ++   I  F+  +D   I   +DS   
Sbjct: 130 ASSMPSFMAG-----VAQSIWNQGAAAFNFVSFVLITPIVFFYTLKDWPKIISSVDSWLP 184

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  + ++  + + + +   G   + +        A  LAG+   + +G+ T + A 
Sbjct: 185 RDNAGELRALAVEINQRVSAFIRGQGAVCVLLAAFYAVALSLAGLEYGLLVGLFTGLAAF 244

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNAT-CLFLWGAIELFIV--DKTLRPFLVGGPIKLPFL 310
           IP       TA +I L I          L + G +          L P ++G  + L  +
Sbjct: 245 IPVVGWTLGTATAITLAILQFWPETMPILIVIGIMLAGQALESAILSPNIIGSEVGLHPV 304

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              F L+      G LGL +   + A I V+ +
Sbjct: 305 WLIFALLTFSYLFGFLGLLVAVPVSAAIGVLVR 337


>gi|159899941|ref|YP_001546188.1| hypothetical protein Haur_3424 [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159892980|gb|ABX06060.1| protein of unknown function UPF0118 [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 403

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/312 (13%), Positives = 104/312 (33%), Gaps = 23/312 (7%)

Query: 16  IMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           ++ I+++SLY +        P + A+I  +   P+ +    + +    +        V+ 
Sbjct: 20  VLSIVIISLYLVNQAWHIMIPFIWAIITAYIFNPVVTWMQRRTKTPRFWW-------VIV 72

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           L+I+    L       +  + S++    Q    +P WL D    +   +  T       +
Sbjct: 73  LYIIGFTLLTLLVSNVVPLITSQINDLAQT---IPIWLDDAKIYVEQHQALTIRGVEIVN 129

Query: 133 LKILSETFLKTNGI--DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           L+                +P  A  F     +  + ++   +  F+      +I      
Sbjct: 130 LREAEREISGAIAAFAKALPGIAPLFLFGLAEGFILLLVYFVVTFYLLLQAETIPNNFYR 189

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L         +++   + +V+ +   G  ++ I   ++   A  +  V   + + + T  
Sbjct: 190 LIPERHRDEIRQLIGSIDRVLSAYIRGQFLLIIIMSVLSYIALSILQVKYALIIAIATGF 249

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGN-------IFNATCLFLWGAIELFIVDKTLRPFLVG 302
           + +IP  G  ++    ++    +G           A  +           D  + P LVG
Sbjct: 250 LEIIPIIGPYMATAIAALVGFFQGTTPFGWEPWVLALVIIAVYFALRQFEDHFIIPNLVG 309

Query: 303 GPIKLPFLPTFF 314
             + +  +   F
Sbjct: 310 HIVNVHPVFVIF 321


>gi|294631801|ref|ZP_06710361.1| membrane protein [Streptomyces sp. e14]
 gi|292835134|gb|EFF93483.1| membrane protein [Streptomyces sp. e14]
          Length = 386

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/323 (13%), Positives = 101/323 (31%), Gaps = 14/323 (4%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           +L A  +     P  S   S+      F   +  + +       +  L      ++ +++
Sbjct: 36  ILIAFFLALAIEPAVSRMASR-GMRRGFATFLVFLGLAIATAGFVTLLGSMLAGQIIKMI 94

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
                     I    W++             + L H   L+  ++     +    +   A
Sbjct: 95  EGFPEYLDSVI---NWVNATFHSHLRRVDIQEGLLHSDWLRKYAQ----NSAAGVLDVSA 147

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
              G +F    +++       F+F  DG  + + L S+      A   +   I       
Sbjct: 148 QVLGGLFRLLTVALF-----SFYFAADGPRLRRALCSVLPPARQAEVLRAWEIAVDKTGG 202

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIK 272
                 ++A+  G+         GVP    LGV   +++  IP        A+ + +   
Sbjct: 203 YLYSRGLMALVSGVAHYVLLQALGVPYAPVLGVWVGLVSQFIPTIGTYLAGALPMLIAFT 262

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
            N + A  + ++  +     +  L+P L    + +     F  ++ G   +G +G  I  
Sbjct: 263 VNPWYALWVLVFVVVYQQFENYMLQPKLTSKTVDIHPAVAFGSVIAGTALLGAVGALIAI 322

Query: 333 VLMALIAVIWKESIMAIKENKEK 355
             +A +       +       + 
Sbjct: 323 PAVATLQAFLGAYVKRYDVTDDP 345


>gi|153834113|ref|ZP_01986780.1| permease PerM [Vibrio harveyi HY01]
 gi|148869483|gb|EDL68481.1| permease PerM [Vibrio harveyi HY01]
          Length = 356

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/350 (14%), Positives = 118/350 (33%), Gaps = 14/350 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +    I+    +++YF     AP+L A+++ +   WP+      +     TF  + 
Sbjct: 15  DPHAVSLVAILLFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQMC--RLGIPRTFSVIT 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + L ++ +  L      ++  L++ +         + ++++ +P           
Sbjct: 73  VILIFIGLMLIAVFGLVPTIWTQVGNLINDIP---NMYAGLQKFIATLP----QRYPELA 125

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +L   +++   ++      G   +    +   +      + +I + + +FF  +D   + 
Sbjct: 126 NLQIVETVVTNAKNQAIGLGESVVKGSLASL-VSLATLAVYLILVPLLVFFLLKDKEEMM 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                +          K+   + + I +   G  +  +  G V    + +  +     L 
Sbjct: 185 SMASGILPK-NRKLANKVWHEMNEQISNYIRGKVLEILIVGGVSYVTFAILDLRYSALLA 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V   +  +IP  GA      V+I  L   G       L +   I   +    L P L   
Sbjct: 244 VAVGLSVLIPYIGAAAVTVPVAIVGLFQWGLTPQFYWLLVAYGIIQALDGNVLVPVLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            + L  +     ++      G  G+F    L  L+  +W       +   
Sbjct: 304 AVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWNALPSTEENEP 353


>gi|320533633|ref|ZP_08034263.1| hypothetical protein HMPREF9057_02151 [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320134141|gb|EFW26459.1| hypothetical protein HMPREF9057_02151 [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 437

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 54/344 (15%), Positives = 117/344 (34%), Gaps = 33/344 (9%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + I  V LY ++  FAP   AL +  T  P+ S     +        V AT +++ +F  
Sbjct: 32  LTIGAVGLYLIQDLFAPAFFALTLVVTVRPLVSWMTRHRVPR----VVAATAAILLIF-- 85

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
                       +    +  V   Q    +P++            +W +  +    + + 
Sbjct: 86  ---------TFVVLLFAALAVAVAQLVDTLPQY------APKFQAIWRQTETQLNGMGVD 130

Query: 137 SETFLKTNG----IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             T LK          +   A             +  M + + F   D   I   + +  
Sbjct: 131 QSTVLKEVTDVLDTSRLVMVAQTVLGQLTSASAMLGVMAMVVVFLMFDTAKIE--IRTAA 188

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             +             + +RS ++  T+  +   ++     W   VP  +  GV++ I  
Sbjct: 189 LGVLKPGMAAAMVSFCEAVRSYWMVSTVFGLIVAVINAVTLWYLDVPMAITWGVVSFITN 248

Query: 253 MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            IP  G  +     +I  L+    + A  + L      F++   ++P   G  + L    
Sbjct: 249 YIPNIGFVLGVVPPAILGLVDSGPWTALWVVLSYVAANFVIQSLIQPKFTGDAVGLNTTT 308

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           TF  L+     +G +G      ++A+   ++ ++++   + + +
Sbjct: 309 TFLCLLFWSTVIGAMG-----TILAVPLTLFVKALLIDSDPRSR 347


>gi|209516516|ref|ZP_03265371.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
 gi|209503120|gb|EEA03121.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
          Length = 351

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 52/338 (15%), Positives = 112/338 (33%), Gaps = 8/338 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q ++   +     + L+ L+    P L   +I +   P        +       A++   
Sbjct: 7   QSLIWGAVALSAGILLWSLRAVLTPFLLGAMIAYILQPGVEWLARHRTPR-GLAALLMIS 65

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               +    +L  F     E  E   +V         + +     P   W    ++  ++
Sbjct: 66  LFALVITSVVLLAFLVIQEEGPEFAEQVPSLAAKFEAILK-----PRLAWLGITYSLDMA 120

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             +          +      + R+    G + +    + + + + LF+   D      +L
Sbjct: 121 SVRDWVAAHLIASEQGAALTVWRYLGTSGNVMMTVVGNAVLVPLVLFYLLYDRHEAFARL 180

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           +S     +    +     +  ++     G  ++          +  LAG+   + +G++T
Sbjct: 181 ESFVPRRWLGRTRDFVAEIDHMMSQYLRGQLLVVAILAAFYPVSLALAGLAIALPIGLLT 240

Query: 249 AIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           A    IP  G A     A+   LL  G+ +    + +   +   +    L P LVG  I 
Sbjct: 241 AFAVFIPYIGFATALAMALLAALLQFGDWYGLGAVMVVYGVGQILESAILTPRLVGERIG 300

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L  L   F L+   +  G  G+ +     A+ A+  +E
Sbjct: 301 LHPLAVIFSLLAFGKLFGFFGVLLALPASAVFALALRE 338


>gi|126663637|ref|ZP_01734633.1| Hypothetical membrane spanning protein [Flavobacteria bacterium
           BAL38]
 gi|126624220|gb|EAZ94912.1| Hypothetical membrane spanning protein [Flavobacteria bacterium
           BAL38]
          Length = 364

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 64/364 (17%), Positives = 134/364 (36%), Gaps = 23/364 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPV---LSALIIGFTSWPIYSSFISKKEE 57
           M    +    +    I+ +  ++L+FL      +   L A++I     P+ +    K + 
Sbjct: 1   MTSKDITVGIVKAVAILLVSCLALFFLYKITTVIIYCLVAIVISLLLNPLVNFLKRKFKF 60

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
            +T  AVI  + V  + I   + LF   +L   E +S + +++         L +I   +
Sbjct: 61  KNTL-AVITAIVVAFIIISGFILLFVPLILAQSENLSLLDVSSLERNYHL-LLENITIFL 118

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
            +  + TK L       I S         +FIP F + F     ++ +    ++   FF 
Sbjct: 119 DSYNINTKQL-------IESSKLSSFTTFEFIPNFLNSFLNTIGNFSVGFASVLFITFFI 171

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            ++  S   +   L               + +++ S FLG+ +      ++    +++ G
Sbjct: 172 LKENHSFYSKFKKLLPENQKEKILNSIHDINRLLSSYFLGLLLQLTIIMILYIIIFFIFG 231

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA----------TCLFLWGAI 287
           V + + + ++ AI  ++P   P+  + V+  L++   I                 L G  
Sbjct: 232 VENAIIIALLCAIFNIVPYVGPLIASIVASLLIMTSGIGTGADFASETLPTAIYVLIGMS 291

Query: 288 ELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            + ++D     P +         L  F  ++      G++G+ I       + VI KE  
Sbjct: 292 LVQVIDNNFTSPLIFSKSTNSHPLEIFLVILITGILFGIVGMIIAVPFYTSLKVIGKEFF 351

Query: 347 MAIK 350
              K
Sbjct: 352 PDNK 355


>gi|162147804|ref|YP_001602265.1| hypothetical protein GDI_2020 [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161786381|emb|CAP55963.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 345

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 113/340 (33%), Gaps = 11/340 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +++ ++++S++ +      V +A +I      + +    +      +LA+   V V+  
Sbjct: 13  AILLAVMVLSIWLIGDVLMVVFAATLIAVILHNLAAMVERRTRL-PYWLALSLVVVVLLA 71

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH-PQS 132
            I  L +     + E          A +  I +      + G + AS +    L + PQS
Sbjct: 72  AIGGLGWSSGPAIAE---------QATRLRIALTTQAHSLRGQLNASTMGRTVLDYLPQS 122

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           L               I    +           ++  ++IA  +F          L  L 
Sbjct: 123 LGGNQAGGGDNGMGSRIAGSMTGVLSSAFGAAGTLAVILIAGLYFALSPALYVNGLLRLI 182

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                   + +  +  + + +   G  +  +  G++ G   W  GVP  +ALGV+  +  
Sbjct: 183 PPGHRPAARTLLLVAGRTLWAWTAGQALDMLVVGILSGVGLWFIGVPLALALGVVAGMAN 242

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
            IP          +I L +         +    A   F     + P +    +++P   T
Sbjct: 243 FIPYIGAFIGAVPAILLGLSQGTREGLLVMALYAAIQFFEGNVMAPLIQRHAVQMPPGLT 302

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
                     +GL GL +   L A +  +   +   + E 
Sbjct: 303 ILSQTVFGTILGLPGLVLASPLTAALLAMMDRATPPLDEE 342


>gi|254448339|ref|ZP_05061800.1| integral membrane transport protein [gamma proteobacterium
           HTCC5015]
 gi|198261952|gb|EDY86236.1| integral membrane transport protein [gamma proteobacterium
           HTCC5015]
          Length = 360

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/315 (13%), Positives = 103/315 (32%), Gaps = 22/315 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +I+ SL        P L A  I   + P+      +      +LA++  V  M     
Sbjct: 22  LMVIIASLRAAADLLVPFLLATFIAVITTPVLRWLQRR--GLPMWLAMLLVVVAMVGSFT 79

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +  L    + +                 +P++ + + G M ++      L +   ++  
Sbjct: 80  LVGALVGSSITDFTR-------------SLPQYKARLGGEMQSA----FALLNSYGIETP 122

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           +    +            +      +   +   +++ + F   +  S   +L S      
Sbjct: 123 TALLREHVNPGAAMEMVGKVFNGLGNVLTNAFLIVLTVIFILAETHSFPNKLKSAFTDAD 182

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
               +   ++    ++   +  T I++  GL      W  G+   +  G++  +   IP 
Sbjct: 183 HHLVQ--FQLFSHTLQKYMVIKTSISLLTGLCATILTWAIGIDYPLLWGLLAFLFNYIPN 240

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ I+     +   ++     A    +   +   ++   + P  +G  + L  L  F  
Sbjct: 241 IGSIIAAVPAVLLAFVQLGGLPALGTAIGYVVINVVMGNMIEPRYMGKGLGLSTLVVFLS 300

Query: 316 LVGGVRTMGLLGLFI 330
           LV      G +G+ +
Sbjct: 301 LVFWGWVFGPVGMLL 315


>gi|29828149|ref|NP_822783.1| integral membrane protein [Streptomyces avermitilis MA-4680]
 gi|29605251|dbj|BAC69318.1| putative integral membrane protein [Streptomyces avermitilis
           MA-4680]
          Length = 412

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 76/212 (35%), Gaps = 2/212 (0%)

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            L+    +F+  +    I    S  G   ++   + +  +    FF   G +      + 
Sbjct: 183 DLQGKVSSFVSEHRSQLISSALSGAGR-VVEVLTAAVLALFCSIFFLHSGDNYWHWFLAR 241

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                   W +  R   +       G+ I+A    +++G A +   VP  + L ++    
Sbjct: 242 LPEGAREPWGRAGRAAWRTFAGYTRGIIIVAASNAVLVGIALFALQVPLALPLTLLEFFA 301

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           A IP  G+PI+    ++  L       A  +     +   I    L P ++   ++L  +
Sbjct: 302 AFIPLVGSPIALAVATVVALASRGPVVAIAVLALIVVVGQIEGHLLHPLVMSWAVRLHPV 361

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                ++ G    G++G  +   ++++   + 
Sbjct: 362 VVALSVIAGSILAGVIGAVVAVPMVSVAWSVL 393


>gi|323486217|ref|ZP_08091545.1| sporulation integral membrane protein YtvI [Clostridium symbiosum
           WAL-14163]
 gi|323400435|gb|EGA92805.1| sporulation integral membrane protein YtvI [Clostridium symbiosum
           WAL-14163]
          Length = 370

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 55/365 (15%), Positives = 129/365 (35%), Gaps = 21/365 (5%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWP----IYSSFISKKEESS 59
           T    + ++   +   + +S  F+   F P L + +I     P    +      K+   +
Sbjct: 5   TEKQRKALLTAGVTAAVYLSFKFILPLFLPFLISYLIALILRPSANFLERKLRVKRRGKT 64

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYY-----GMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
             + +     +  + I+ LL   ++       +E  +LV+ V +  Q+      WL+ + 
Sbjct: 65  YAVPIGVIGGIEMILILALLGAGFFYGGRRLFMEANQLVNAVPVWVQNFD---EWLTGMC 121

Query: 115 GGMWASELWTKHLSH---PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
             +       + +        L   +  F      + +    S FG       +++I  I
Sbjct: 122 HSVETFCRLQEGVLVKMVQDVLLGTARAFKNATMPNLVVNSVSVFGFFIKVAIITVILFI 181

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
            ++           ++ +S+    F    K+++      +R+  + + +       +   
Sbjct: 182 ASILSLQEMDELRERRYNSIFRREFSLLGKRLALTGNAWLRTQAVILFLTTC----LCIL 237

Query: 232 AYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
                G P ++  G+   ++  +P  G         I+L+++   +    L     +  F
Sbjct: 238 TLIAIGNPYYIIAGIGIGLLDALPIFGTGTVLIPWGIFLMLQQKWYQGVMLLGLYLVCYF 297

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           + +  +   L+G  + L  L T   +  G++  G LG  +GPV + LI  + +E      
Sbjct: 298 MRE-FVEAKLMGKKMGLSPLETLMSMYVGLQLFGFLGFILGPVGLMLIEDLVEEYWKNGN 356

Query: 351 ENKEK 355
               K
Sbjct: 357 NTCNK 361


>gi|237749032|ref|ZP_04579512.1| predicted protein [Oxalobacter formigenes OXCC13]
 gi|229380394|gb|EEO30485.1| predicted protein [Oxalobacter formigenes OXCC13]
          Length = 359

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 52/317 (16%), Positives = 119/317 (37%), Gaps = 7/317 (2%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            P ++  I+ +   P+     S +  S     + + V V+   I     +  + ++ +  
Sbjct: 33  TPFIAGAILAYALNPVVDWLRSLRIGSFRIPRLASVVIVVLFLI---SLVTTFALIMIPM 89

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF--I 149
           L+ +  +  +        +S+    +         + +    KIL+E F       +  +
Sbjct: 90  LLKEWPILYEQIPAFVAKVSNHLNPVLNEIGIQMPVDNAGVKKILTEQFFPKGDGVWKSL 149

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
              A   G   L +  ++I + + LF+   D   ++++L  +    +     +    V  
Sbjct: 150 IASAKFGGTAVLTWAWNLILIPVVLFYLLLDWHILTRKLRDMIPRRWVGKTIRFCHEVNT 209

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS--FTAVSI 267
           ++     G  ++ +   +    A  LAG    + +G++T +MA +P        F A++ 
Sbjct: 210 MLAQYLRGQLLVMLILSIYYSLALALAGYNVALPVGIMTGLMAFVPYIGICIGLFLAITA 269

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            L+    +     L +            + P LVG  I+L  L   F L+   +  G +G
Sbjct: 270 TLVQFSGMEAWVTLGIIYGFGYSFDGLLMTPKLVGDRIQLHPLFVIFALLAFAQLFGFVG 329

Query: 328 LFIGPVLMALIAVIWKE 344
           + +     A+++V +K 
Sbjct: 330 ILLALPSSAILSVAYKH 346


>gi|39997548|ref|NP_953499.1| hypothetical protein GSU2453 [Geobacter sulfurreducens PCA]
 gi|39984439|gb|AAR35826.1| membrane protein, putative [Geobacter sulfurreducens PCA]
          Length = 350

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 109/336 (32%), Gaps = 29/336 (8%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFF-----APVLSALIIGFTSWPIYSSFISKKEESST 60
           + P+          I   L  L G F     + VL++L+I +   P      +K      
Sbjct: 1   MRPRDAAHIAWFLAITFGLVLLAGHFAVHSLSAVLTSLVIAYLLNPAMKFMEAKGLGRLP 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            +AV+            L       +  +  +             VPR++ ++       
Sbjct: 61  AIAVLY-----------LSIAVGILLALILLIPYLSHQLEAFPRAVPRYVDNL---QLVM 106

Query: 121 ELWTKHLS------HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
           E W   L+          L   +E  LK   ++   +   +    F     +++   I +
Sbjct: 107 ETWKGRLTPYYGGEEGTWLIARAEESLKKLALELTGKGYQQLTRAFFG-LFNLVLAPILV 165

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           FF       +   +     H     ++++   + + +    L   +  +  G++   A +
Sbjct: 166 FFMLYYKDFVKDLVLRFVPHRERPSFREMGGRIKRSLERFILAQLLDCVIVGILSALALY 225

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPI--SFTAVSIYLLIKGNI-FNATCLFLWGAIELFI 291
             G+   +  G++    +++P    +        I     G++         +  I + I
Sbjct: 226 AIGIEFPLLNGLVAGFASVVPFVGVMVAVIPPALIGYAETGDMSVIPLVCAAYFVISVII 285

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
               ++P L+ G ++L  L   F L+     MG  G
Sbjct: 286 EGNLIKPLLMRGTLRLNPLAVIFVLMAMGELMGFWG 321


>gi|315302384|ref|ZP_07873255.1| membrane protein YdbI [Listeria ivanovii FSL F6-596]
 gi|313629240|gb|EFR97502.1| membrane protein YdbI [Listeria ivanovii FSL F6-596]
          Length = 348

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 57/355 (16%), Positives = 118/355 (33%), Gaps = 25/355 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           + +       R ++  +I + LY L+     +L   I  F    + +  + +       +
Sbjct: 5   DRLKENNTARRVLVFVLIGMVLYLLRSMIDLILLTFIFAFLVTRLENVILKRVRIPRKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V     + ++      + ++ +LV  +V    +  P    +     G      
Sbjct: 65  VIVLYTLVAAFLYIAIVHFLPILIDQISQLVGSLVKIYNN--PSDNTVVKWVVGFLKESN 122

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             K+L                 G+DFI    S  G + L + L++I  +    FF  +  
Sbjct: 123 IQKYLQ---------------TGVDFIIASLSGIGSVGLSFFLALILSL----FFSLEKE 163

Query: 183 SISQQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            ++              +K+     +              +IA+   ++   A +L G P
Sbjct: 164 RVTSFTGQFLASKVGFIFKEAAFFGKKFVATFGVVLEAQLMIALVNTIITTIALYLMGFP 223

Query: 240 SHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             ++L ++  ++ +IP    I     + +     G   +   + L   I   I    L P
Sbjct: 224 QLLSLSIMVFVLGLIPVAGVIISCVPLVLIAYTVGGFQDVFYILLTVVIVHAIETYILNP 283

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L+     LP   TF  L+      G+ GL +G  +   +  I        KE +
Sbjct: 284 KLMSSKTNLPVFYTFIVLIFSETFFGVWGLIVGIPVFVFLLDILDVRNAEDKEKR 338


>gi|300728368|ref|ZP_07061730.1| membrane protein [Prevotella bryantii B14]
 gi|299774287|gb|EFI70917.1| membrane protein [Prevotella bryantii B14]
          Length = 328

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 55/333 (16%), Positives = 115/333 (34%), Gaps = 19/333 (5%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P   A +  +  +PI              LA+I T+ ++ + I  L +     ML+    
Sbjct: 2   PFFIAWLFAYLLYPIVKFIQYNMHVKVRALAIILTLILVVVVIGALYYAIIPPMLDQFAR 61

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ-SLKILSETFLKTNGIDFIPR 151
              V         + RWL         + L      + Q  ++   ++    + +     
Sbjct: 62  FEDV---------LNRWLGQTTHSNSLTTLIKNWFVNNQVEIEHFLKSKDFNDAVKTTMP 112

Query: 152 FASRFGMIFLDYCLSII---FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
                        +SII     ++ +FF   D   ++Q    +       +W+++++ V 
Sbjct: 113 KVFNVLGQTASIVISIIASMITLLYMFFILLDYEYLTQNWIKIFPKKNRPFWQELAQDVE 172

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
             + +   G  ++A+  G++    + + G P  + LG++  I+ ++P     +    +  
Sbjct: 173 HALNNYIRGQGLVALIMGIMFCIGFTIIGFPMGIGLGILIGILDLVPYLHTFALIPTAFL 232

Query: 269 LLI----KGNIFNATC--LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
            ++     G  F        L   I   I D  + P ++G  + L        L      
Sbjct: 233 AMLKAADTGENFWIVFGSAVLVFIIVQIITDFIVTPKVMGKAMGLNPAVLLLSLSVWGAV 292

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G +GL I   L  LI   W+  +    E   +
Sbjct: 293 LGFIGLIIALPLTTLIMAYWQRYVTREHEETPQ 325


>gi|51893523|ref|YP_076214.1| hypothetical protein STH2385 [Symbiobacterium thermophilum IAM
           14863]
 gi|51857212|dbj|BAD41370.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 367

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/340 (14%), Positives = 120/340 (35%), Gaps = 15/340 (4%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           ++  +   L+ ++   AP L A+++ +   P+ +  +         +  +         +
Sbjct: 17  LVLALAWGLWTIRPVLAPFLLAVVLAYLLAPLVNRLVGLGLPRPWAILAVYAALAAAGVL 76

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V ++ L    + E++ L   + L +     +   L            W +    P  L+ 
Sbjct: 77  V-VVKLVPSALTEVRRLTEAIPLYSARAREMADGLQR----------WARDAGLPPELRE 125

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI----IALFFFYRDGFSISQQLDSL 191
             +  +    +  +        +  L+     +F +       F+  +D     ++    
Sbjct: 126 SLDRSITNIEVRSVAALHRLVDIQTLEAAAGFLFSLALAPFLAFYLLKDLDYFRERFVRS 185

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +     ++ R + +VI     G  ++ +  G +  +A  L G+   V LG+   +M
Sbjct: 186 LPRRWRQDIIQLLRELDRVISGFVRGQILLGLSVGALAAAASSLLGLRFAVLLGIWAGLM 245

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
             IP   P+     ++   +  + +    + L   I   + +  L P ++G  + L  + 
Sbjct: 246 EFIPYVGPVLGAVPAVLSGLAQSPWRGLQIALVFLIIQQLENAVLSPKIMGESVGLHPIG 305

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
               ++ G    G  GL +     AL+ V+W   +  + E
Sbjct: 306 VLLVVLAGGYLAGPWGLILAVPAAALVRVLWSFVVARLTE 345


>gi|126659691|ref|ZP_01730820.1| hypothetical protein CY0110_29194 [Cyanothece sp. CCY0110]
 gi|126619036|gb|EAZ89776.1| hypothetical protein CY0110_29194 [Cyanothece sp. CCY0110]
          Length = 365

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 57/346 (16%), Positives = 123/346 (35%), Gaps = 18/346 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF-----LKGFFAPVLSALIIGFTSWPIYSSFISKK 55
           M      PQ I+   ++ ++   L       + G  + +L+A +I F          +  
Sbjct: 1   MNSWFSRPQKILVTWLLILVTGWLTVKTLSYIGGLISLILTASLIAFLLNYPVRGLKTVL 60

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
               +  A +  +  + + I   + L    + + ++L++K+    + G      L     
Sbjct: 61  P--RSLAATLVYLGAIFIVIFLGITLLPPVVNQGRQLITKLPGLLEEGQLQLITLQGFIN 118

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
                       S            + + G   +            ++ + +I +I+  F
Sbjct: 119 AKKLPIDLQFLASQILDKVEAQTEDIASTGFGLVL--------GTFNWFIDLIVVIVISF 170

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           +   DG  I + + +      P     ++  + K ++    G  I+ +   + L  A+ L
Sbjct: 171 YMLLDGEKIWKSIINF---FSPQIRDVLTTTLKKNLQRFLTGQLILGLFMAVSLTIAFRL 227

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
            G+P  +   V   +M ++P             +LI  N + A  + +   I   + D  
Sbjct: 228 LGIPFFLLFAVFIGVMEILPFIGATLGIGTVTIILIFINWWLAVQVLVVAVIIQQVKDNL 287

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           + P ++G    LP +  F  L+ G +  GLLG+ +   L  +I  I
Sbjct: 288 IAPRIMGNLTGLPPVMIFIALLLGAKIAGLLGVILAIPLTGVIKGI 333


>gi|194466814|ref|ZP_03072801.1| protein of unknown function UPF0118 [Lactobacillus reuteri 100-23]
 gi|194453850|gb|EDX42747.1| protein of unknown function UPF0118 [Lactobacillus reuteri 100-23]
          Length = 372

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/358 (12%), Positives = 119/358 (33%), Gaps = 28/358 (7%)

Query: 6   LNPQGIMRWM---IMFIILVSL--------YFLKGF-------FAPVLSALIIGFTSWPI 47
           ++ Q    W+   ++ + + +L        +  + F       F P++ +  + +   P+
Sbjct: 1   MSKQKFYHWLFWPLLLLTVATLIWMCTKIQFIFQPFLTFISVVFVPLIISGFLYYMLNPV 60

Query: 48  YSSF----ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG 103
              F    I +   +    +++  + ++ + +  +  L    + E+  LV  +       
Sbjct: 61  LKLFMKIKIGRFHMNRGIASLLIVLLLIVIVVGGIAMLIPPVVKEISTLVRNMPQTVTGI 120

Query: 104 IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY 163
             +      I   +  S L    L+                 +  +         +  + 
Sbjct: 121 QHL------INDTIEHSFLRNVDLNAYYRQFDHQLAGYAQKVLQGLSTRVGDIIGMLTNV 174

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
            +  I + + LF+  +DG  +   +              +   +   + S   G  I  +
Sbjct: 175 TVVTITVPVMLFYMLKDGSKLIPSIQKWLSPHHAKEVNDLLGKMNSTLSSYISGQMIECL 234

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
             G+     Y + G P  + LG++  +  +IP   P    A ++++ +         + +
Sbjct: 235 FVGVFTSIGYVIIGQPLAIVLGIVAGLTNIIPYIGPYIGIAPALFVALTMAPNKIIWVIV 294

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
              +   +    + P ++G  +++  L     L+      G+ G+ +     A+I  +
Sbjct: 295 VVIVVQQVDGNIVYPNIIGKTLQIHPLTIIMLLLAAGHIAGIGGMILCIPFYAVIKTV 352


>gi|169829810|ref|YP_001699968.1| hypothetical protein Bsph_4383 [Lysinibacillus sphaericus C3-41]
 gi|168994298|gb|ACA41838.1| UPF0118 membrane protein [Lysinibacillus sphaericus C3-41]
          Length = 365

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 95/294 (32%), Gaps = 9/294 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY- 84
            LK  F P+L   +  + + PI      +K     + +++  V  +        ++    
Sbjct: 38  ILKAIFIPLLLGGVFYYVTEPIQRFLEKRKFPR--WASILTIVFGLIGIAGIFGWIIGNP 95

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
              ++ +LV    + +       + L+D    +       +     + +    +      
Sbjct: 96  IAEQVNKLVKNAPMISSSISTSIQQLTDY-VLLNKDNFPQQVNDVIEKMANSVQDVAMVA 154

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
              FI    S   +  L   +   F+     F  +D    +  +          + KK  
Sbjct: 155 SKGFISFLQSIVSVSLLAVLIPFFFI-----FMLKDHEKFAPSIYKYFSGERQQWVKKTL 209

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
             +  V+RS   G   I+    L++   Y + G+   + L +    M MIP   P     
Sbjct: 210 SEIDDVLRSYIQGQLQISFLLALIMYVGYLIIGLEYSLLLVIFAFFMNMIPFIGPWIAFT 269

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            ++ + +  +      + +   +   I    + P ++G  + +  L     ++ 
Sbjct: 270 PALIVAVIQDPILVVWVSVVTLVAQQIDSNFITPNVMGKSLDIHPLTVITIILA 323


>gi|56416572|ref|YP_153646.1| permease perM-like [Anaplasma marginale str. St. Maries]
 gi|222474939|ref|YP_002563354.1| permease perM-like protein (perM) [Anaplasma marginale str.
           Florida]
 gi|56387804|gb|AAV86391.1| permease perM-like [Anaplasma marginale str. St. Maries]
 gi|222419075|gb|ACM49098.1| permease perM-like protein (perM) [Anaplasma marginale str.
           Florida]
          Length = 450

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/344 (12%), Positives = 109/344 (31%), Gaps = 11/344 (3%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA-----TVSVMCLFI 75
            V ++ ++        A ++ +   P+ +   S           I        + + +F+
Sbjct: 102 AVLVFVMRPVLPLCCVAAVLAYLLNPLVNRLESIGLPRPVSSFAIIFSSVGVFAALLVFL 161

Query: 76  VPLL----FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
           VP+           +++         + N            + G M    L   +L    
Sbjct: 162 VPIAYSQTLALAKLLVDKLPFAGVEGIKNALLAYDMLRYDGVIGAMNPEALSPHNLFSGN 221

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            ++ +            +     + G+        +   ++ LF+       + +    +
Sbjct: 222 HVEFIKLLDGLYKNFIKVAVGVVQSGVGIGTIAAKVFITLLLLFYILGSWPIVVKNALLM 281

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +   +      +  ++ +   G T + +   +     + + G+   + LGVI+ IM
Sbjct: 282 VPRHYLEGFSHCMSKIDSIVSAYIRGQTTVCLIMLIYYCICFAVVGLEYSLVLGVISGIM 341

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--DKTLRPFLVGGPIKLPF 309
             IP   PI   ++   L I  +        +     +  V     + P L+   + L  
Sbjct: 342 TFIPYIGPILCASLGACLAILQDFSWTGTAAVILVFVVGNVVESNIITPVLLSKKLDLNP 401

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                G+V      GLLG  +   + A+++V+   ++   K + 
Sbjct: 402 GWVVIGMVVFSAHAGLLGALVSIPVTAIVSVLTHFAVEKYKHSN 445


>gi|255327349|ref|ZP_05368423.1| integral membrane protein [Rothia mucilaginosa ATCC 25296]
 gi|255295629|gb|EET74972.1| integral membrane protein [Rothia mucilaginosa ATCC 25296]
          Length = 408

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 98/289 (33%), Gaps = 10/289 (3%)

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           + +V    +   G   ++  VS    A Q    +  WL ++     A ++         +
Sbjct: 93  MILVLAGIISLTGQQILRGFVSMADKAVQGYQQLIGWLKNLGYEFGADQMNQLLDQMESA 152

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           +     + L            S+ G    +     +  +  L FF  +G  I   +  L 
Sbjct: 153 VTNNPSSVLHG---------VSQVGSTAAEVATGTLLTLFTLVFFLMEGERIWLFVTRLF 203

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                A      R   K + +      ++A  + + +G    + GVP  + LGV+  + +
Sbjct: 204 PKDARAAVNGAGRAGWKSLGAYVRVQILVAAIDAIGIGVGAAILGVPLAIPLGVLVFLGS 263

Query: 253 MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +P  GA IS     +  L+      A  +     +   +    L+P ++G  + L  L 
Sbjct: 264 FVPVIGALISGAVAVLLALVALGPVQALIMLGIVLLVQQLESHILQPLIMGKAVSLHPLA 323

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
             F + GG    G +G       +A++  + +       E +      F
Sbjct: 324 VIFSVAGGSMIFGAVGALFAVPTLAVVNAVVRYLANRDWEKEAPREEEF 372


>gi|156975460|ref|YP_001446367.1| hypothetical protein VIBHAR_03191 [Vibrio harveyi ATCC BAA-1116]
 gi|156527054|gb|ABU72140.1| hypothetical protein VIBHAR_03191 [Vibrio harveyi ATCC BAA-1116]
          Length = 356

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/350 (13%), Positives = 118/350 (33%), Gaps = 14/350 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +    I+    +++YF     AP+L A+++ +   WP+      +     TF  + 
Sbjct: 15  DPHAVSLVAILLFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQMC--RLGIPRTFSVIT 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + L ++ +  L      ++  L++ +         + ++++ +P           
Sbjct: 73  VILIFIGLMLIAVFGLVPTIWTQVGNLINDIP---NMYAGLQKFIATLP----QRYPELA 125

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +L   +++   ++      G   +    +   +      + +I + + +FF  +D   + 
Sbjct: 126 NLQIVETVVTNAKNQALGLGESVVKGSLASL-VSLATLAVYLILVPLLVFFLLKDKEEMM 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                +          K+   + + I +   G  +  +  G V    + +  +     L 
Sbjct: 185 SMASGILPK-NRKLANKVWHEMNEQISNYIRGKVLEILIVGGVSYVTFAILDLRYSALLA 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V   +  +IP  GA      V+I  L   G       L +   +   +    L P L   
Sbjct: 244 VAVGLSVLIPYIGAAAVTVPVAIVGLFQWGLTPQFYWLLVAYGVIQALDGNVLVPVLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            + L  +     ++      G  G+F    L  L+  +W       +   
Sbjct: 304 AVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWNALPSTEENEP 353


>gi|325963817|ref|YP_004241723.1| permease [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469904|gb|ADX73589.1| putative permease [Arthrobacter phenanthrenivorans Sphe3]
          Length = 436

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/320 (12%), Positives = 111/320 (34%), Gaps = 11/320 (3%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           +++AL I     P+     S+K      + +++   ++   +     L    + ++ ++V
Sbjct: 128 IVAALFIALGLEPVVGWLESRKIPRPAGI-LVSVTVLVSAVVGFFATLIPTIVEQVTQIV 186

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
            +           P W+ D     +   L  +     +  + L +       +  I    
Sbjct: 187 EQA----------PVWIRDFIDSDFFRSLDDQFGVRERVTEELDKFVNDPAAMGGIFGGV 236

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
             FG    +     + +++   +F     ++ +    L         + +S  + + + +
Sbjct: 237 VGFGSTVANGLFGTLIVLVLSLYFLAALPAMKKWGYRLAPRSRRHRVEALSEEITRSVGN 296

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
             +G  ++A+           + G+P  + L  + A++A IP    +    V + + +  
Sbjct: 297 YVIGQAVVALLNATFAFIVMSIVGIPFALLLAFVVALLAFIPLVGGMIAGVVVLLVSLTE 356

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
               A    +     L      + P ++   + +P       ++ G   +G+LG  I   
Sbjct: 357 GWQAAAVYGICYFSYLQFEAYFISPRIMQKAVAVPGAVAVISVIAGGSLLGVLGALIAIP 416

Query: 334 LMALIAVIWKESIMAIKENK 353
             A + ++ +E  +  ++  
Sbjct: 417 TAAAVLLLIREIYIVRQDQH 436


>gi|313618959|gb|EFR90805.1| membrane protein YdbI [Listeria innocua FSL S4-378]
          Length = 345

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 121/358 (33%), Gaps = 26/358 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  + + R  +  +I   LY L+     +L   I  +    + +  + +       + ++
Sbjct: 8   LQNRSVRRVGVFLLIAFVLYLLRSQMNIILLTFIFSYLITRLENFILRRISIYRQIIVLL 67

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V +  + +   +        ++ +LV       +                  +E    
Sbjct: 68  LYVLIAGVIVFVFVKYIPVLADQINQLVKFGNSFLKT--------------DSNNEFINY 113

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            +S      I+        G+  I  + +  G + ++    +   ++   FF      + 
Sbjct: 114 IVSLANQFDIMK---YTEQGVSMILTYLTNVGTVLMN----VFIALMLSLFFSLGKDHLI 166

Query: 186 QQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              +          +++                    IIA+   ++   A W+ G P  +
Sbjct: 167 SFTNQFSTSKIGFIYEEVKFFGSKFVATFGKVIEAQFIIALVNAVLTTIALWILGFPQLM 226

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L ++  ++ +IP  G  IS   ++I     G +     + +   I   +    L P L+
Sbjct: 227 TLSIMVFLLGLIPVAGVIISLIPLTIIGYSIGGVEYIFYILVVVIIIHALESYVLNPKLM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKEKISS 358
                LP   TF  L+ G    G+ GL +G PV+M  + V+   +   + + K+ IS 
Sbjct: 287 SAKTNLPVFYTFIILIFGEHFFGIWGLIVGIPVVMFFLDVLGVTNQEEVNQPKDIISH 344


>gi|229825463|ref|ZP_04451532.1| hypothetical protein GCWU000182_00823 [Abiotrophia defectiva ATCC
           49176]
 gi|229790026|gb|EEP26140.1| hypothetical protein GCWU000182_00823 [Abiotrophia defectiva ATCC
           49176]
          Length = 396

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/345 (14%), Positives = 117/345 (33%), Gaps = 21/345 (6%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEES---------STFLAVIATVSVMCLFIVPLLFL 81
             PV+   I+ +  +P+     S   +                +  + ++    + +  L
Sbjct: 54  LKPVIIGFIMAYLLFPMLEKLESLLRKIKPLKKKKSVRGLAVALQWIIILVGLFIVVSLL 113

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
                 + +   S+ ++           ++++       +   K   +   +K   +TF 
Sbjct: 114 VSVITKQARAANSEDIIEGIKTYA--NSINEL--YRELIDRLDKLNINSAEIKSSVDTFT 169

Query: 142 KTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA- 198
              G  +  +            D   + +F +I   +F  D   + +    +   + P  
Sbjct: 170 NNLGKYMLNLSSQLGNLAGNLKDGLATALFALIFSIYFLLDMPKLKKYWGRVLGIILPEK 229

Query: 199 ---YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                  + +   KV      G  I A   G+V+   + + G+   + +G++  +  +IP
Sbjct: 230 VKTTLDTLIKDADKVFSGYIRGQAIDAFMVGVVVSVVFSIIGIQYAIVIGLLIGLGNLIP 289

Query: 256 GGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
              PI  ++++ I  +   +  +     +   I   I    + P L+   + +  +    
Sbjct: 290 YMGPIVGYSSIVIVGIATSDYKSMVIAAIALLIIQAIDGNLIYPKLLSTSVNIHPMIVII 349

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            L  G    GL+G+ +     AL+ V W E ++ I E K     N
Sbjct: 350 SLTVGASIGGLVGMIVAVPTGALVKV-WFERLINIAEKKNVNKDN 393


>gi|254994787|ref|ZP_05276977.1| permease perM-like protein (perM) [Anaplasma marginale str.
           Mississippi]
          Length = 434

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/344 (12%), Positives = 109/344 (31%), Gaps = 11/344 (3%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA-----TVSVMCLFI 75
            V ++ ++        A ++ +   P+ +   S           I        + + +F+
Sbjct: 86  AVLVFVMRPVLPLCCVAAVLAYLLNPLVNRLESIGLPRPVSSFAIIFSSVGVFAALLVFL 145

Query: 76  VPLL----FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
           VP+           +++         + N            + G M    L   +L    
Sbjct: 146 VPIAYSQTLALAKLLVDKLPFAGVEGIKNALLAYDMLRYDGVIGAMNPEALSPHNLFSGN 205

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            ++ +            +     + G+        +   ++ LF+       + +    +
Sbjct: 206 HVEFIKLLDGLYKNFIKVAVGVVQSGVGIGTIAAKVFITLLLLFYILGSWPIVVKNALLM 265

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +   +      +  ++ +   G T + +   +     + + G+   + LGVI+ IM
Sbjct: 266 VPRHYLEGFSHCMSKIDSIVSAYIRGQTTVCLIMLIYYCICFAVVGLEYSLVLGVISGIM 325

Query: 252 AMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
             IP   PI        + +L   +      + L   +   +    + P L+   + L  
Sbjct: 326 TFIPYIGPILCALLGACLAILQDFSWTGTAAVILVFVVGNVVESNIITPVLLSKKLDLNP 385

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                G+V      GLLG  +   + A+++V+   ++   K + 
Sbjct: 386 GWVVIGMVVFSAHAGLLGALVSIPVTAIVSVLTHFAVEKYKHSN 429


>gi|219870889|ref|YP_002475264.1| putative permease, PerM family protein [Haemophilus parasuis
           SH0165]
 gi|219691093|gb|ACL32316.1| putative permease, PerM family protein [Haemophilus parasuis
           SH0165]
          Length = 354

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 50/338 (14%), Positives = 108/338 (31%), Gaps = 13/338 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +PQ +    I+ I   ++YF      P+L A++  +   WPI     +K +       VI
Sbjct: 15  DPQIVALLAILIIGFGTIYFFSDLLMPLLIAIVFAYLLEWPI-RFLTTKLKLPRMLSLVI 73

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
                + L +   + +      +    +  +         +  WL  +P        +  
Sbjct: 74  VLGGFISLSVFLFVVMLPSLWNQAVTFLKDLPSMFNL---LNAWLEALPEHYPELIDYAM 130

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S   + K    TF  +          S  G+    + + ++      FF  +D     
Sbjct: 131 LDSLMATAKTKILTFGDSLLSFSFNSLVSLVGLGIYAFLVPLMV-----FFLLKDKTLFM 185

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +               ++   +   I +   G  +  +  G+     +    +   + L 
Sbjct: 186 RSALRFMPK-NRHLATRVWGEMQLQIANYIRGKFLEILIVGVATYIIFLFFDLRYPLLLS 244

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGG 303
           V   +  ++P  GA +    V++  L +  +       L   +   ++D   + PFL   
Sbjct: 245 VAVGLSVLVPYIGAVLVTIPVALVALFQFGLSPDFYYLLLAFVISQLLDGNLVVPFLFSE 304

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            + L  L     ++      G  G+F    L  L+  +
Sbjct: 305 AVNLHPLTIIVAVIIFGGLWGFWGVFFAIPLATLVKAV 342


>gi|163794619|ref|ZP_02188589.1| hypothetical protein BAL199_26706 [alpha proteobacterium BAL199]
 gi|159179892|gb|EDP64417.1| hypothetical protein BAL199_26706 [alpha proteobacterium BAL199]
          Length = 362

 Score = 74.1 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 68/342 (19%), Positives = 131/342 (38%), Gaps = 16/342 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           I + +L   +    P++ A ++     P ++ F+ ++    T LA  A   +  + I+ L
Sbjct: 30  IFVAALRLAQDVVIPIVGAAVMAVVLTP-FARFLMRRFMFPTSLAAFAAFILAFVVILSL 88

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           LF+    +  + E    +V   ++       L  I   M A + W++ +    SL   S+
Sbjct: 89  LFVAVPTVQRLSEDFPSLVYRVEYK------LRSIALSMEAVKRWSETVEGLISLGQKSD 142

Query: 139 T--FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE-HL 195
               L   G   + +  S            I+FM++ +FFF RD   + + +  L     
Sbjct: 143 GNHVLVREGGGAVGQLISS----TPKVIAQIVFMLVLVFFFVRDRRVLQRVIIRLAPTPQ 198

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++ R+V     S  L + +I +  G    +A+++AG+P  +A G   A++  +P
Sbjct: 199 TRFKAARVCRVVQNKAASYLLSVCVINLVLGAATATAFFIAGMPEPLAWGAAMAVLNFVP 258

Query: 256 GGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
              P+    VS    L+I  +I  A            I      P ++     +  L T 
Sbjct: 259 FIGPLILQIVSFLAGLVIYPSIEAALIPPAVLIALNLIESNFGMPLVMEKRFLMSPLATL 318

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             +  G    G  G  +   L+ ++     E  +  +  K K
Sbjct: 319 VAIACGAWMWGTPGAVLAVPLVVMVTTGSSEWRLGRRSVKTK 360


>gi|260430970|ref|ZP_05784941.1| membrane protein [Silicibacter lacuscaerulensis ITI-1157]
 gi|260414798|gb|EEX08057.1| membrane protein [Silicibacter lacuscaerulensis ITI-1157]
          Length = 357

 Score = 73.7 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 50/312 (16%), Positives = 107/312 (34%), Gaps = 14/312 (4%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P +    I +   P+     S    S      I TV+ + LF++ +L +    + ++ +L
Sbjct: 32  PFVIGGAIAYFLDPVADRLES-LGLSRVAATGIITVAGILLFVLMILMVVPALITQLIDL 90

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
           +                                  S+     +     L+    D +   
Sbjct: 91  IDIFPSLFSQLRDFIE---------RQFPSLLDDQSNTHQFLLSLSDTLQGKTGDILKSV 141

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
            +  G       L +I  ++A+ +   D   +  +++ L         ++++  +  V+ 
Sbjct: 142 MASVGSAVNVIVLLVIVPVVAV-YLLLDWDHMIARINDLLPRDHAPTIRRLAGEIDAVLA 200

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
           S   GM  + +  G     A  L G+   + +G I  ++  IP    +   +++I L + 
Sbjct: 201 SFVRGMGTVCLILGTYYAVALMLVGLQFGLVVGFIAGLVTFIPYLGALIGGSLAIGLALF 260

Query: 273 ---GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
              G+  +   +    AI   +    L P LVG  + L  +     L       G +G+ 
Sbjct: 261 QFWGDWTSIGLVAGIFAIGQVVEGNFLTPKLVGNSVGLHPVWLLLALSVFGALFGFVGML 320

Query: 330 IGPVLMALIAVI 341
           I   + A + V+
Sbjct: 321 IAVPVAASLGVL 332


>gi|225572907|ref|ZP_03781662.1| hypothetical protein RUMHYD_01098 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039720|gb|EEG49966.1| hypothetical protein RUMHYD_01098 [Blautia hydrogenotrophica DSM
           10507]
          Length = 343

 Score = 73.7 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/346 (14%), Positives = 122/346 (35%), Gaps = 6/346 (1%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           ++   + I    I+  + +   ++     P L   ++    +P       K     ++  
Sbjct: 2   SLEVRRKICAIGIVIGVYLGFRYVVPVAVPFLIGWLLAVWVYPAGEWIERKIHLKKSWAG 61

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +  V ++ LF++ L         ++K +       +  G+ +          +   +  
Sbjct: 62  AVILVGLLTLFLLLLWKGGILLWEQIKLIFLNFHNLSDWGMRILDQCCQAAEQVTGIKKE 121

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                       +    +++       +  S  G IFL   +  +   ++   F ++  S
Sbjct: 122 VSRQFILTQAGQMQRNLMESVTPQSFLKLISEAGEIFL-VGMGFLITWLSGILFLQEMDS 180

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + +++    E       ++I+R + +   +      +I    GL+    +WL G P ++ 
Sbjct: 181 VKRKVR---ESSVLRGVRRIARRLKETTITYLKAQLVIMGVIGLICTLGFWLMGSPYYLL 237

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G    I+  +P  G        ++Y L+K     A    +   +   +V + L P L+G
Sbjct: 238 FGAGLGILDALPVIGTGTFLYPAAVYFLLKKEFSVAVGCVILD-LVTSVVREFLEPKLIG 296

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             + +  +     +  G    G  G+  GP+ +++   + KE  + 
Sbjct: 297 RRLGISPVIVLAAVYFGFYLYGPWGVLAGPLSLSVAYEVGKEWDIW 342


>gi|47570617|ref|ZP_00241232.1| membrane protein [Bacillus cereus G9241]
 gi|47552723|gb|EAL11159.1| membrane protein [Bacillus cereus G9241]
          Length = 181

 Score = 73.7 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 66/179 (36%)

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
            ++DG +   +  SL    +     +I +   + + +   G  ++ I  G      Y + 
Sbjct: 1   MFKDGHAFPGKAVSLLPESYREEGLRIIKETNETLSAYIQGQALVCIFVGAFTFIGYLII 60

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
            +P    LG+I A   +IP   P    A ++ + +  +   A  + +   I        +
Sbjct: 61  DLPYAFVLGIIAAFTNIIPNLGPFIGAAPAVIVGLFVSPMQALYVIIIVTIVQQFESNII 120

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            P ++   + +  L     ++G     G++G+ +   + A+   +    +   K  +  
Sbjct: 121 SPRIMSSKLNIHPLTIIILILGVGNFAGIIGMILAVPVYAVTKTVVSNLVRLFKTKRSN 179


>gi|282854725|ref|ZP_06264060.1| putative membrane protein [Propionibacterium acnes J139]
 gi|282582307|gb|EFB87689.1| putative membrane protein [Propionibacterium acnes J139]
          Length = 433

 Score = 73.7 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 107/336 (31%), Gaps = 28/336 (8%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFF-------APVLSALIIGFTSWPIYSSFISKK 55
           E   +  G+ +  I+ + + + +    F        AP+   L +  T++PI++  +  K
Sbjct: 78  EVATSKHGLPKLTIVLLTVAAAWLGLSFLHELSSVVAPLFFGLNLLITAYPIHTWLVKHK 137

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
                  A  A  +V+ +    ++ + +     + +L S                  IP 
Sbjct: 138 CPR-WISATTAGTAVIVVLAAGVVGMVWSVAAMINQLQSY-----------------IPQ 179

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
                       +     + +    LK      +    +            II ++  + 
Sbjct: 180 MEKIYTQLLHWSTQLGYSQEVIADKLKKIDPQQVMSVVTSVASDTTSVVTMIIVILTGMI 239

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F   D   +  +L   G                  IR  +L  T+  +   L   +A  +
Sbjct: 240 FMVMDTPQMHDRLRMAGSR--KPVVVLALESFASGIRKYWLVTTVFGLIVALFDWAALLI 297

Query: 236 AGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
            GVP      + + +   IP  G  I     ++  L K     A  + +  ++  F++  
Sbjct: 298 IGVPLAGVWALFSFLTNYIPNIGFIIGVIPPALLALFKDGWVAAVVVVVSYSVLNFVIQS 357

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            ++P   G  + L    +F  L+      G LG  I
Sbjct: 358 IIQPKFAGDAVGLTPTMSFVSLLLWGWVFGALGTLI 393


>gi|261415247|ref|YP_003248930.1| protein of unknown function UPF0118 [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371703|gb|ACX74448.1| protein of unknown function UPF0118 [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302326974|gb|ADL26175.1| putative membrane protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 375

 Score = 73.7 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 55/300 (18%), Positives = 103/300 (34%), Gaps = 11/300 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L G   P  +A +I +   P+      K         V+  +    +    + F     +
Sbjct: 30  LSGVLFPFFAAFLIAYIMDPLVCRLQIKFRYR-VIAVVVVLLGAAIIIGGCMYFFVPKVV 88

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE----LWTKHLSHPQSLKILSETFLK 142
            E++ L + +           R ++ +P   WAS      W       +SL + S     
Sbjct: 89  HEVQYLGTLISRIFTDSTWSDRIMTFLPADTWASVKTMISWNSIAEAMESLDVWSVVQTV 148

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           ++ I                   S   + + L F   D   I + +  L    +     +
Sbjct: 149 SDRILPGAWDILSKTSTIFMGVSSAAVVFMYLVFIMLDMHKIRKGIRRLIPRRYRREAGE 208

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG----GA 258
            +    K + + F   +++A   G++    + + G+P  VA G+ +  + MIP       
Sbjct: 209 FASSTDKFMGTYFRAQSMVAFTVGVLYAIGFSVMGLPMGVAFGLFSGALNMIPYMQLTTI 268

Query: 259 PISFTAVSIYLLIKGNIFN--ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           P++     +Y L KG  F   A  +     +   I D  L P +VG  + LP +     L
Sbjct: 269 PLALLLAVVYALDKGMPFWEVAIIILAIYLVVQIIQDFFLVPHIVGKSMNLPPVGILLSL 328


>gi|58584987|ref|YP_198560.1| permease [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|58419303|gb|AAW71318.1| Predicted permease [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 333

 Score = 73.7 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 53/315 (16%), Positives = 115/315 (36%), Gaps = 10/315 (3%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLA-----VIATVSVMCLFIVPLLFLFYYGML 87
           P L+++++ +   P+   F          +      ++  + +   FI+P++++    +L
Sbjct: 4   PCLTSIVVAYLFNPLVIKFEKYGIPRLYSVIFITFLLLMVLILAVTFILPIIYVEIISIL 63

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
               LVSKV   N   I     L +I       +  +K+L+   S  +           +
Sbjct: 64  NF--LVSKVSSLNPKVIQPVLELLNIKIDNDLFDHLSKNLAENYSDYVSYFINAFNIASN 121

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
           FI +  S      +     ++   +  F+  RD   I ++++ L    +          V
Sbjct: 122 FITQMLSS-SFSLIHIVSLVVITPVMFFYILRDWPLIVEKVNKLIPIPYRKKAADYFSKV 180

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
             ++ +   G   + I           + G+   +A+G+++  +  IP   P  +T +  
Sbjct: 181 DFIMSNYLKGQANVCIVMTTFYSIGLSIIGLKHSIAIGILSGTLTFIPYIGPSLYTIIGF 240

Query: 268 YLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
                     F +  + L   I   I    L P LVG  + +       G+      +GL
Sbjct: 241 LSAATQFSGWFESVAILLLFGIGQLIDTNILAPLLVGKKVHIHPAIIIIGITICASYLGL 300

Query: 326 LGLFIGPVLMALIAV 340
           +G+ +   ++A+  V
Sbjct: 301 IGILLFVPIIAIFNV 315


>gi|255525857|ref|ZP_05392785.1| protein of unknown function UPF0118 [Clostridium carboxidivorans
           P7]
 gi|296185100|ref|ZP_06853510.1| membrane protein, putative [Clostridium carboxidivorans P7]
 gi|255510421|gb|EET86733.1| protein of unknown function UPF0118 [Clostridium carboxidivorans
           P7]
 gi|296049934|gb|EFG89358.1| membrane protein, putative [Clostridium carboxidivorans P7]
          Length = 388

 Score = 73.7 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 60/338 (17%), Positives = 121/338 (35%), Gaps = 21/338 (6%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA-----VIATVSVMCLFIVPLLF 80
            LK FF     AL+I +   P   S  +  E+            I  + V  L     + 
Sbjct: 48  VLKPFFI----ALVIVYLLKPGVKSVENFLEKKKILKKPSSRRAIGILVVYALVTGIFVA 103

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLKILSE 138
           +     + +   VS  V  +  G+ +  +L +  +       +L + ++S P +L     
Sbjct: 104 VISGIYIMVGGKVSSNVTISNMGMFLTDYLKNSTLSVTSINEKLASLNISIPGNLNDKIA 163

Query: 139 TFLKTNGIDFIPRFAS------RFGMIFLDYCLSIIFMIIAL--FFFYRDGFSISQQLDS 190
             + +    F     S        G     + ++++  I  +  F ++ D ++    L  
Sbjct: 164 EIVSSIQSYFSASIGSITNSVVSIGGNIASFFIAVVLSIYLIQDFEYFMDLWNKIFDLI- 222

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
            G+       K+I  IV         G  + A   G++     +   +   + +G+I  I
Sbjct: 223 FGKSKVGNKLKEILNIVDDTFYRYIRGQLLEAGIVGVLSAIVLYFIKIDYALMIGIIAGI 282

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIKLPF 309
             MIP   P+  T +++ + +           + G + +  VD   L P +VG  + L  
Sbjct: 283 CNMIPYIGPVVGTVLAVIMALLSGEPITALWAIIGMLVVQQVDNNLLAPKIVGDSVGLHP 342

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           + T   ++ G    GL+G+ I     A +  +  +   
Sbjct: 343 VFTMVAILVGGNVGGLIGMLIAVPAAASLKRLISKWYA 380


>gi|329944871|ref|ZP_08292898.1| hypothetical protein HMPREF9056_00781 [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328529682|gb|EGF56578.1| hypothetical protein HMPREF9056_00781 [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 437

 Score = 73.7 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 55/344 (15%), Positives = 118/344 (34%), Gaps = 33/344 (9%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + I  V LY +K  FAP   AL +  T  P+ S              + AT +++ +F  
Sbjct: 32  LTIGAVGLYLIKDLFAPAFFALTLVVTVRPLVSWMTRHHVPR----VLAATTAILLIF-- 85

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
                       +    +  V   Q    +P++            +W +  +    + + 
Sbjct: 86  ---------TFVVLLFAALAVAVAQLVDTLPQY------APKFQAIWRQAETQLNGMGVD 130

Query: 137 SETFLKTNG----IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             T LK          +   A             +  M + + F   D   I   + +  
Sbjct: 131 QSTVLKQVTNVLDTSRLVTVAQTILAQVTSASAMLSVMAMVVVFLMFDTAKIE--IRTAA 188

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            ++             + +RS ++  T+  +   ++     W   VP  +  GV++ I  
Sbjct: 189 LNVLKPGMASALVSFCEAVRSYWMVSTVFGLIVAVINVLTLWYLDVPMAITWGVVSFITN 248

Query: 253 MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            IP  G  +     +I  L+    + A  + L   +  F++   ++P   G  + L    
Sbjct: 249 YIPNIGFVLGVVPPAILGLVDSGPWTALWVVLSYVVANFVIQSLVQPKFTGDAVGLNTTT 308

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           TF  L+     +G LG      ++A+   ++ ++++   + + +
Sbjct: 309 TFLCLLFWSTVIGALG-----TILAVPLTLFVKALLIDSDPRSR 347


>gi|300787453|ref|YP_003767744.1| hypothetical protein AMED_5588 [Amycolatopsis mediterranei U32]
 gi|299796967|gb|ADJ47342.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
          Length = 389

 Score = 73.7 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 53/313 (16%), Positives = 103/313 (32%), Gaps = 14/313 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L     PV  AL++     P  S    KK       A I  V  + +    + F+     
Sbjct: 52  LASVLVPVAVALLLAGLFSPAVSWLAGKKVPR-GLAAAIVLVGGIGVAGGVVTFVVISVT 110

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
           + M  L+ +V  +      +  WL   P  +   +L     +   +L             
Sbjct: 111 VGMPALIDQVTAS---LTDLHTWLRTGPLHLSQVQLDEMLGNLTATLGRNKSA------- 160

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             I   A    +   +     +  +  L FF   G  I   +                R 
Sbjct: 161 --IASGALTTAVTVGELLAEALLAVFCLIFFLAQGRVIWVFVLRAVPAGLRNRVDVAGRS 218

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
               +     G   +A+ +   +     + GVP    L  +  + A +P    +   A++
Sbjct: 219 GFTTLAHYIRGTAAVALVDAAGISLGLVIIGVPLAAPLSALVFLGAFVPVIGSVIAGAIA 278

Query: 267 IYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           + + L+   ++ A  +       + +    L+P L+G  ++L  L     L  G+ T G+
Sbjct: 279 VLVALVANGVWAAVIVLAVVVGVMQLESHVLQPLLLGRAVRLHPLAVVLALTIGLVTAGI 338

Query: 326 LGLFIGPVLMALI 338
           +G  +   L+A+ 
Sbjct: 339 VGALLAVPLLAVF 351


>gi|294010650|ref|YP_003544110.1| putative permease [Sphingobium japonicum UT26S]
 gi|292673980|dbj|BAI95498.1| putative permease [Sphingobium japonicum UT26S]
          Length = 365

 Score = 73.7 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/350 (13%), Positives = 105/350 (30%), Gaps = 15/350 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +    W  M I +  L  L      ++ AL++                    +   I  V
Sbjct: 26  KRAGVWFAMGISIALLVLLAQPIMLIMGALVLATMMDGGTRLLGRLMPIGRGWRLAIILV 85

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           + +   +            + + +    V+       + +WL  +              +
Sbjct: 86  AALTFLVYTFYLTGSSLAAQAQAMR---VIVETQVNRIGQWLQQLGV-----------TT 131

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
            P  L       L    +  + R  +  G   +    S + M++   F   +     + +
Sbjct: 132 MPGDLGPEDFKSLAQQAMSSLGRVTAAVGT-MVGAVTSGVMMLVLAIFIAIEPKIYERGV 190

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +        +  I+  +   +R    G  I    EG       W  GVP    LG++T
Sbjct: 191 AWMLPMDRRDRFYAIADRMGWTLRRLMFGRLIGMAVEGGGTWLLLWAGGVPMAGLLGILT 250

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            + A +P    I    + + +     +      F        +    + P +      L 
Sbjct: 251 GLFAFLPNIGSIISGVLIVLVGFSAGVDAGLYAFGVYLAVQIVDGYLIVPMVAKRATDLA 310

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                   +      G++GLF+   ++A+I V  +E   A++    + ++
Sbjct: 311 PALVLAAQILFGALFGIMGLFLADPIVAMIKVYLEERSKALEAENGRSAA 360


>gi|56964203|ref|YP_175934.1| hypothetical protein ABC2438 [Bacillus clausii KSM-K16]
 gi|56910446|dbj|BAD64973.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
          Length = 362

 Score = 73.7 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 128/356 (35%), Gaps = 10/356 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +++    + +YF    F P+L AL+      P       K ++    L V    
Sbjct: 7   KKIFLIVVIAAAGLFVYFNLSAFMPILLALLTAMVFEPFVKFLQKKMKQEKRLLPVTIVF 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW----LSDIPGGMWASELWT 124
                    LL++    ++E   +    +   Q+   + ++    +SD    +       
Sbjct: 67  LSFLFVSGVLLYITVRYLIE--SIYGWTLQLPQYAFEIQQFADKLISDFTDTLDRIPQGA 124

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             ++  Q L   +   +       I   A+       +     +  II LF F  D   +
Sbjct: 125 AIVAELQRLSETAVDTVLGFTATVITTIAAWL-QSIPNLLFVTLVYIITLFLFSLDLPRL 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
                +L +       + + R + KV    +    I++IG  L    +       S + +
Sbjct: 184 LSNTFNLFKDETSQKLQFVFRRMGKVFLGYWKAQFILSIGVFLACYISLLFIAPSSALIM 243

Query: 245 GVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            ++  ++ +IP   G  +      + ++I GN      L +  A+ L I+ + + P ++G
Sbjct: 244 SILIWVVDIIPLYVGPALILVPWGLVVIILGNTAMGIQLMVL-ALVLLILRRIIEPKVLG 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             I L  LPT   +  G    G++GL  GP +   +    +  +  +   +E  + 
Sbjct: 303 DSIGLNALPTVLSMYFGFVFFGVMGLIFGPFVYIAVRSAIEAGLFRLNAPEEPTAK 358


>gi|306821732|ref|ZP_07455328.1| conserved hypothetical protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550201|gb|EFM38196.1| conserved hypothetical protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 450

 Score = 73.7 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/332 (12%), Positives = 100/332 (30%), Gaps = 14/332 (4%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
               F   +  A I+      I  +        S+    +    +  + +  L  +FY  
Sbjct: 39  LFTPFITGICIAFILNIPMQKIEKTINKLFGWKSSRAFSLFLTIIAFIMV--LTLIFYMI 96

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL------WTKHLSHPQSLKILSET 139
           + E+     ++       +         P       +      + K  S+          
Sbjct: 97  IPEIVNSFVEIRNGLPTVVDNFVKFMKTPDNHIIKTMSNIGLDFDKMYSNVTDFFKNFSL 156

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF---FFYRDGFSISQQLDSLGEHLF 196
              +N +  I    +      ++  L +IF +  L         G S+   L ++     
Sbjct: 157 LDASNALQSIFSATTNVFSSVMNVFLGLIFAVYILSQKEVLLSQGHSL---LKAIFPDKR 213

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                   R+V         G    A+    +  ++  L  +P  V++  +  + +++P 
Sbjct: 214 TKKIVSFLRLVSSSFSKFIAGQGTEAVILCFLFLASMTLFHIPKAVSIATMIGLFSLVPI 273

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             P       +  ++      +    +   +   I    + P +VG  + LP +     +
Sbjct: 274 VGPFIAATYGVLSILIVAPIKSLWFVVLFLVLQQIEGNLIYPRVVGKSVGLPGVWVLLAI 333

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             G    G+ G+ +    M+++  +    + +
Sbjct: 334 TVGGNFAGITGMIMAVPTMSIVYNLVTSFVRS 365


>gi|298530977|ref|ZP_07018378.1| protein of unknown function UPF0118 [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509000|gb|EFI32905.1| protein of unknown function UPF0118 [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 364

 Score = 73.7 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/357 (13%), Positives = 115/357 (32%), Gaps = 20/357 (5%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           N Q ++   ++      +YF      P  + L+I +         ++K         ++ 
Sbjct: 14  NQQVVILVGLLLFFFGVVYFFGQMLLPFFAGLVIAYLLDG-MVKMMTKYGIPRLLAVILV 72

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSK----VVLANQHGIPVPRWLSDIPGGMWASEL 122
            +  M +      +L    + ++ +LV +    +  A  H + +P     +       E+
Sbjct: 73  FLGFMLIMFFSFFWLVPMLIKQVTQLVQQLPSMISEAQMHLLQLPERYPHLVSQEQIQEV 132

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            +   +    L               I   +    +  +   + +I + + +FFF +D  
Sbjct: 133 ISALRTEVAQL------------GQQILSISVASVVGLITILVYLIIVPLLVFFFLKDKE 180

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +             +   ++   V + I +   G T   I       + +   G+   V
Sbjct: 181 MLLAWFTRFLPR-ERSLAVQVWEDVNRQISNYIRGKTWEIIIVWGATFAVFSFFGLQYSV 239

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIF-NATCLFLWGAIELFIVDKTLRPFL 300
            L +   +  +IP  GA +    +++    +         + +  AI   +    L P L
Sbjct: 240 LLSLAVGLSVLIPYIGAAVVTVPIALVAYFQWGFGSEFVWILVAYAIIQALDGNVLAPLL 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           +G  + +  +     +       G  G+F    L  L+  + +    A    K+ I 
Sbjct: 300 LGEVVNIHPVGIVAAIFVFGGLWGFWGVFFAIPLATLVQAVIRAWPRAEDVKKQAIE 356


>gi|149180329|ref|ZP_01858834.1| hypothetical protein BSG1_04900 [Bacillus sp. SG-1]
 gi|148852521|gb|EDL66666.1| hypothetical protein BSG1_04900 [Bacillus sp. SG-1]
          Length = 391

 Score = 73.7 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 52/369 (14%), Positives = 127/369 (34%), Gaps = 22/369 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKG---------------FFAPVLSALIIGFTSWP 46
           R   ++ + +  W+I  +++VS+ F+                  F P+L  L + F   P
Sbjct: 18  RGIAVSKKSLQFWLIQILLIVSIVFVSTKISFLFHPLTIFITTLFFPILITLFLYFLLNP 77

Query: 47  IYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK-ELVSKVVLANQHGIP 105
           I +     K        V+A + +  L I  L+      +  +  +  +       +   
Sbjct: 78  IVNFIQRYKVPR-----VVAILIIYVLIIGLLVLAIGNIVPTITKQFTALANELPTYAAK 132

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
             ++  ++       E   +     ++ +     F           F +  G +  +  +
Sbjct: 133 TFQYFENLSRSAEFKEFMNEQQDLLETAQERLVAFANDLPTLITGSFQNLLG-LVANIAI 191

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
            ++ + + LF+ ++DG      +       +      I +     + +   G   + +  
Sbjct: 192 ILVTVPLLLFYMFKDGHKFPIAVSKFFPSEYRKEAITILKETGSTLAAYIQGQVTVGLFV 251

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           G++    Y +  +   + L +  A+  +IP   P+   A ++ + +  +   A  + L  
Sbjct: 252 GILSLIGYLIIDLRFALVLAITVAVTNIIPYVGPLIGGAPAVIVGLFESPTKALLVLLIL 311

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            I   +    L P ++G  +          L+      G+LG+ +     A+I  +    
Sbjct: 312 VIAQQVEGNILSPLILGKTLDTHPATIIILLLAAGNLAGVLGMILAVPTYAVIKTVIINL 371

Query: 346 IMAIKENKE 354
           +  +K  KE
Sbjct: 372 VKFLKARKE 380


>gi|307151174|ref|YP_003886558.1| hypothetical protein Cyan7822_1280 [Cyanothece sp. PCC 7822]
 gi|306981402|gb|ADN13283.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7822]
          Length = 370

 Score = 73.7 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 54/342 (15%), Positives = 121/342 (35%), Gaps = 15/342 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           ++ + + +L+      ++A ++ F   +PI    +  +  S  +   +  +  + +  + 
Sbjct: 27  LLFLLIGYLEPLVTIFITATLLAFLLDFPI--RLLELRGISRVWAVTLVFLIALVILAIL 84

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
            L L    + ++ +L++ +      G      L              + +          
Sbjct: 85  ALVLIPLILQQLSDLIAVLPQWIDTGTENIDNLRKWAIAQRLPININQVIGQIAEKLTTV 144

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              L T G++F+                +I+F+++   F    G +I   + S       
Sbjct: 145 VQSLSTQGLNFLLGAIGSI--------FNILFVLVLTVFLVFTGQNIWDGIFSWIPE--- 193

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
            +  ++  ++       F    I+A    L     + +  VP  V  GV   + ++IP  
Sbjct: 194 PWNVELRNLIRDKFERYFASQAILAGILSLSQTVVFLILQVPYAVLFGVTIGLTSLIPYA 253

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
           +  +   VSI L ++ N      + +   I   I D+ + P L+GG   L  +     L 
Sbjct: 254 SAFTILLVSIILSLE-NWVLGLKVLIAAIIVGQINDQVITPRLMGGITGLNPVWLILALF 312

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            G +  G+LGL +   L ++I          +    E + + 
Sbjct: 313 IGGKFAGILGLLLAVPLASVIKSATDNLRYRLTHPNESMIAQ 354


>gi|163816686|ref|ZP_02208049.1| hypothetical protein COPEUT_02876 [Coprococcus eutactus ATCC 27759]
 gi|158447943|gb|EDP24938.1| hypothetical protein COPEUT_02876 [Coprococcus eutactus ATCC 27759]
          Length = 550

 Score = 73.7 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/310 (11%), Positives = 99/310 (31%), Gaps = 25/310 (8%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEE----------------SSTFLAVIATVSVMCLF 74
           FAP++   +I F   P+   F                      S T   ++ T+  + + 
Sbjct: 53  FAPIIVGAVIAFLMNPVLVFFDRLFHTIFQDKVITDKKKLFKVSRTLSVILTTIVFLGII 112

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
              +  +       +K+LV  +     +   +   +++       +    +   +  +  
Sbjct: 113 TGVVWLVVPQLYDSIKQLVGNMDNYYSNLQNMVENINE--KFQKLNIPEDELNKYMNTAY 170

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLD---YCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +  +  L T  +  + +     G        +  + +  I+A  +   +   ++ +   +
Sbjct: 171 LKLQDMLNTKIMPNVDKIVVNIGSGVFSGLKFLYNFLIGIVASIYVMANKEYLASRGKKI 230

Query: 192 GEHLFPAYWKKI----SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              +F              + ++      G  + ++  G+++     +  +P  V + VI
Sbjct: 231 IYAVFKVKNANNILDGLSEMYRIFGQFINGKILDSLIIGMIMFIVSTILNLPYAVLISVI 290

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  +IP   PI       ++++  +   +  L L   I        L P ++G    L
Sbjct: 291 VGVTNVIPFFGPIIGAIPCFFIVLIADPIKSLVLLLVILILQQFDGNILGPKIIGDTTGL 350

Query: 308 PFLPTFFGLV 317
                   ++
Sbjct: 351 SSFWVLTAVI 360


>gi|313123584|ref|YP_004033843.1| hypothetical protein LDBND_0821 [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280147|gb|ADQ60866.1| Conserved hypothetical membrane protein [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 357

 Score = 73.7 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 52/354 (14%), Positives = 114/354 (32%), Gaps = 27/354 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE-SSTFLAV 64
            N   + R  ++ +I+++LY+++     +L   I  +    +      K +  S   +  
Sbjct: 10  KNNIHLRRATVLVMIILALYYVRTMMNTILLTFIFTYLIVHLVRFVQGKFKHVSDKLIVA 69

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  + ++ L    L +     + ++ ++   V+   Q                     W 
Sbjct: 70  LTYLLIVVLLYFALRYYVPVLVKQVTKMTKSVINYYQTN----------------DVGWL 113

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
               H    +    + +K++               F    +S +  ++  FF+  +   +
Sbjct: 114 MTQLHKYVSEKTISSQVKSSLTALTAAL-----KGFGSVTMSFVMALVLSFFYTIELKEM 168

Query: 185 SQQLDSLGEH----LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                S  +               R              +IAI    +      +  +P 
Sbjct: 169 QTFSQSFLKSDLFGWLFEDIAYFGRKFTNTFGVVLEAQFLIAICNTALTIVCLAIMKMPQ 228

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             ALG++  I +++P  G  IS   +S+     G I +   + +  A+   +    L P 
Sbjct: 229 IFALGLMVFICSLVPVAGVIISLIPLSLVAYTVGGIQDVIYILIMIAVLHTLETYILNPK 288

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            +    +LP   TF  L+ G    G  GL +   +      I     +  K+ K
Sbjct: 289 FMSSKTELPIFYTFVVLLFGEHFFGTWGLIVSVPIFTFFLDILGVKNINSKQEK 342


>gi|188581278|ref|YP_001924723.1| hypothetical protein Mpop_2025 [Methylobacterium populi BJ001]
 gi|179344776|gb|ACB80188.1| protein of unknown function UPF0118 [Methylobacterium populi BJ001]
          Length = 370

 Score = 73.7 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/310 (13%), Positives = 107/310 (34%), Gaps = 14/310 (4%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I+ +++  LY L+    P ++ L + +   P+                + AT+ ++  F+
Sbjct: 11  ILAVLVFLLYELREVMLPFVAGLALAYLLDPLADRLERLGLGR-----LAATLLILAGFV 65

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V L+ +    +      ++ +V +    +   + +     G     +    + +   L+ 
Sbjct: 66  VGLVVVLIIVVPLAAGQIASLVNSLPTMVGKLQSILVERAGPLLQRIGGAEVVN--ELQS 123

Query: 136 LSETFLKTNGIDFIPRFASRFG--MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
              T +   G  F+    S +      +     ++   +  F+   D   +   LD    
Sbjct: 124 SVGTLVGQGGTWFLAFLKSLWTGSQALVSIASLLVVTPVVAFYVLHDWDRMIATLDGWVP 183

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  ++++  +   +     G +++ +  G       +L G+   V +G+I+  +  
Sbjct: 184 PRHRPTARRLAGEIDGAVTGFVRGQSLVCLILGSFYAVGLFLVGLNFGVLIGMISGFLTF 243

Query: 254 IPG-----GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           IP      G  +S     +     G+  +         +  F+    + P LVG  + L 
Sbjct: 244 IPYVGTLTGFMLSVGVALVQWWPTGDWLHIGLTVGVFLVGQFLEGNVISPKLVGDSVGLH 303

Query: 309 FLPTFFGLVG 318
            +   F L+ 
Sbjct: 304 PVWLMFALLA 313


>gi|149183675|ref|ZP_01862089.1| hypothetical protein BSG1_18470 [Bacillus sp. SG-1]
 gi|148848623|gb|EDL62859.1| hypothetical protein BSG1_18470 [Bacillus sp. SG-1]
          Length = 345

 Score = 73.7 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 50/343 (14%), Positives = 119/343 (34%), Gaps = 26/343 (7%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIG-----------FTSWPIYSSFISKKEESS 59
           +   ++  I +   Y L   + PVLS LI+            +   P+            
Sbjct: 1   MAITLLAVITVYVFYLLYPVWHPVLSVLIMAMIPFLLGGFITYLLHPVVEKLFKAGIHRG 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
                   ++++ ++I+    L Y     +  ++ ++    ++               W 
Sbjct: 61  --------IAILLIYILFFGGLGYAVYKGIPVIIHQLKDLAENAPLYTEQYQR-----WL 107

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDF--IPRFASRFGMIFLDYCLSIIFMIIALFFF 177
             +  +  + P  ++   ET ++        +  F     +  ++  L    +    F+ 
Sbjct: 108 DYIQRQTSTWPDGIQHELETRIERFEEWLNGVVAFILSGVLKIMNSLLLFAIVPFISFYL 167

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            +D   + +   SL    +        + + + +     G  ++ +  G +   ++WL G
Sbjct: 168 LKDFPKVKKAATSLTPKKWRNSAGSFFKDLDESLGGYIRGQLLVCLLIGSLAALSFWLFG 227

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           +   + LG+I  I  +IP   P+     +  +    +      + +      F+    L 
Sbjct: 228 MKYPLLLGIIVGITNVIPYFGPVIGAVPAAIVASTISNEMIIKVIVIVFALQFLEGNILS 287

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           P +VG  + +  L     L+ G    G+LGL +   L+A++ V
Sbjct: 288 PLIVGKSLHMHPLFIMGALIIGGEVGGVLGLIVAVPLLAMLKV 330


>gi|154483895|ref|ZP_02026343.1| hypothetical protein EUBVEN_01600 [Eubacterium ventriosum ATCC
           27560]
 gi|149735386|gb|EDM51272.1| hypothetical protein EUBVEN_01600 [Eubacterium ventriosum ATCC
           27560]
          Length = 415

 Score = 73.7 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 57/348 (16%), Positives = 125/348 (35%), Gaps = 22/348 (6%)

Query: 24  LYFLKGFFAPVLSALIIG-FTSWPIYSSFISKKEESSTFLAVIAT-----VSVMCLFIVP 77
           L  +  F   +L A +I    SW  ++ F       +  LA +       V V+   +V 
Sbjct: 48  LATMSPFLIGILIAFLINPLVSWLHHTVFEKWLYVKNNVLAHLLAITFSYVLVIVFLVVG 107

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           ++++    +  + +L+ K+       I     ++     +    L     +   +++   
Sbjct: 108 IIYIVPEIIDSLTQLLDKLPEWGDALISYINTIAAKHPELQLDYLIKSISNADSTIQEFL 167

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD----GFSISQQLDSLGE 193
             F+       +       G+  + +  + I  II   +   D       I + + ++ +
Sbjct: 168 GGFISKLTTTIVVT-----GVSIIKFVFNFIVAIIVSIYLLIDKKMQSRGIKRTIYAIFD 222

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL---AGVPS----HVALGV 246
                    + +    +  + F G  I ++  G +   +  +    GVP      + +G+
Sbjct: 223 EERADKICAVIKRSIHIFSNFFDGKMIDSLIIGALTFVSMMIISLFGVPGFSNCALLVGI 282

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +  I  MIP   P      SI LL   ++ +A    +   I   +    + P ++G    
Sbjct: 283 VVGITNMIPYFGPFLGGIPSILLLCIYSLNSALIFAILIIIIQQLDGNLIGPKILGNSTG 342

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L  L   F +  G    G+ G+ +G   +A+IA + ++ +    E K 
Sbjct: 343 LRPLWIIFAITLGGWIAGIPGMLLGVPCVAVIAGLLEDWVNERLEAKN 390


>gi|126650477|ref|ZP_01722700.1| putative permease [Bacillus sp. B14905]
 gi|126592633|gb|EAZ86632.1| putative permease [Bacillus sp. B14905]
          Length = 365

 Score = 73.7 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 95/294 (32%), Gaps = 9/294 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY- 84
            LK  F P+L   +  + + PI      +K     + +++  V  +        ++    
Sbjct: 38  ILKAIFIPLLLGGVFYYVTEPIQRFLEKRKFPR--WASILTIVFGLIGIAGVFGWIIGNP 95

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
              ++ +LV    + +       + L+D    +       +     + +    +      
Sbjct: 96  IAEQVNKLVKNAPMISSSISTSIQQLTDY-VLLNKDNFPQQVNDVIEKMANSVQDVAMVA 154

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
              FI    S   +  L   +   F+     F  +D    +  +          + KK  
Sbjct: 155 SKGFISFLQSIVSVSLLAVLIPFFFI-----FMLKDHEKFAPSIYKYFSGERQQWVKKTL 209

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
             +  V+RS   G   I+    L++   Y + G+   + L +    M MIP   P     
Sbjct: 210 SEIDDVLRSYIQGQLQISFLLALIMYVGYLIIGLEYSLLLVIFAFFMNMIPFIGPWIAFT 269

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            ++ + +  +      + +   +   I    + P ++G  + +  L     ++ 
Sbjct: 270 PALIVAVIQDPILVVWVSVVTLVAQQIDSNFITPNVMGKSLDIHPLTVITIILA 323


>gi|325264760|ref|ZP_08131489.1| sporulation integral membrane protein YtvI [Clostridium sp. D5]
 gi|324030052|gb|EGB91338.1| sporulation integral membrane protein YtvI [Clostridium sp. D5]
          Length = 372

 Score = 73.7 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 56/316 (17%), Positives = 110/316 (34%), Gaps = 4/316 (1%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
           GFF P +   II   + P+ +    + +      + +  + V+ L ++ L F       E
Sbjct: 33  GFFMPFVIGWIISAIATPVVNWLEKRLKIVKKLGSALIVIVVLALIVLLLYFAISKVSAE 92

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGM--WASELWTKHLSHPQSLKILSETFLKTNGI 146
           + +LV              R +     G+     E      +   +        L T   
Sbjct: 93  IGDLVKNFPELYAQLEEGLREIGSTLSGVFSKLPEGIQNGWNAVVANLDQYMGELVTKLS 152

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
                 A  F      Y ++ I  +++ +FF      + Q L  +           +   
Sbjct: 153 QPTVTAAGNFAKSLPSYLIAFIVAMMSAYFFTVQREEVIQWLKKVSPPSVEKRMSLVMDN 212

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAV 265
           +   +   F     I     L+L +   + GV   + +  + A +  +P  G   +    
Sbjct: 213 LKYAVGGYFKAQFKIMGIVFLILFAGLAMFGVHYAILIAFLIAFLDFLPFFGTGTAMIPW 272

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++Y L+ G+      L +  AI   +V + L+P LVG  + L  L T   L  G +   +
Sbjct: 273 ALYKLLTGDYKMTAALLVIYAITQ-LVRQLLQPKLVGDSMGLNPLVTLLLLYIGYKVSSV 331

Query: 326 LGLFIGPVLMALIAVI 341
           LGL +   +  ++  +
Sbjct: 332 LGLILAVPIGMVLINM 347


>gi|325684228|gb|EGD26404.1| membrane protein [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 357

 Score = 73.7 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 51/354 (14%), Positives = 115/354 (32%), Gaps = 27/354 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE-SSTFLAV 64
            N   + R  ++ +I+++LY+++     +L + I  +    +      K +  S   +  
Sbjct: 10  KNNIHLRRTTVLVMIILALYYVRAMMNTILLSFIFTYLIVHLVRFVQGKFKHVSDKLIVA 69

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  + ++ L    L +     + ++ ++   V+   Q                     W 
Sbjct: 70  LTYLLIVVLLYFGLRYYVPVLVKQVTKMTKSVINYYQTN----------------DVGWL 113

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
               H    +    + +K++               F    +S +  ++  FF+  +   +
Sbjct: 114 MTQLHKYVSEKTISSQVKSSLTALTAAL-----KGFGSVTMSFVMALVLSFFYTIELKEM 168

Query: 185 SQQLDSLGEH----LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                S  +               R              +IA+    +      +  +P 
Sbjct: 169 QTFSQSFLKSDLFGWLFEDIAYFGRKFTNTFGVVLEAQFLIAVCNTALTIVCLAIMKMPQ 228

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             ALG++  I +++P  G  IS   +S+     G I +   + +  A+   +    L P 
Sbjct: 229 IFALGLMVFICSLVPVAGVIISLIPLSLVAYTVGGIQDVIYILIMIAVLHTLETYILNPK 288

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            +    +LP   TF  L+ G    G  GL +   +      I     +  K+ K
Sbjct: 289 FMSSKTELPIFYTFVVLLFGEHFFGTWGLIVSVPIFTFFLDILGVKNINSKQEK 342


>gi|126463195|ref|YP_001044309.1| hypothetical protein Rsph17029_2435 [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104859|gb|ABN77537.1| protein of unknown function UPF0118 [Rhodobacter sphaeroides ATCC
           17029]
          Length = 358

 Score = 73.7 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 114/326 (34%), Gaps = 14/326 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P +    I +   PI               A+I+           LL +    +  + 
Sbjct: 30  ILPFIVGGAIAYFLDPIADRLERAGLSRVAATALISVAM--------LLVVVLLVLSVIP 81

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            LVS++         + R L          +L  +  +  Q+L  + +T  +  G   + 
Sbjct: 82  TLVSQLTALIDAAPTIFRQLHSFLL-DHFPQLSDETSTARQTLLSIGDTIKERGGE--VA 138

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     ++  + ++ + +  F+   D   +  ++DS          ++++R + +V
Sbjct: 139 NTLLTSAYGVINAMIFMVVVPVVSFYLLLDWDPMVAKIDSWLPRDHAPTLRRLAREIDEV 198

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           +     G   + +  G     A    G+   + +G I   +  IP    +   A++I L 
Sbjct: 199 LAGFVRGQISVCLVLGTFYAVALAAVGLQFGLVVGAIAGAITFIPYVGALIGGALAIGLA 258

Query: 271 IK---GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +    G+  +   +    A+  F+    + P LVGG + L  L   F L       G +G
Sbjct: 259 LFQFWGDWLSIGLVAGIFALGQFLEGNVITPRLVGGSVGLHPLWLLFALSAFGSIFGFVG 318

Query: 328 LFIGPVLMALIAVIWKESIMAIKENK 353
           + +   + A I V+ +  I     ++
Sbjct: 319 MLVAVPVAAAIGVLARFGIRQYTSSR 344


>gi|258404397|ref|YP_003197139.1| hypothetical protein Dret_0259 [Desulfohalobium retbaense DSM 5692]
 gi|257796624|gb|ACV67561.1| protein of unknown function UPF0118 [Desulfohalobium retbaense DSM
           5692]
          Length = 356

 Score = 73.7 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 50/358 (13%), Positives = 113/358 (31%), Gaps = 12/358 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ ++  +I+   ++ +  +    APVL+++++ +    +    +   E     
Sbjct: 9   RRHFSDPQVVILALILISCILLIMTVGDLIAPVLASVVLAY----LLEGLVRFLENRRVP 64

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +   +  +         +     L  +++V              R L  +P       
Sbjct: 65  RMLAVCLVFLIFVFFLFFLVLGLLPLLSQQIVQFFQELPSMLAAGQRELMRLPERYPKFI 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              + L    +LK        T     +   +        +  + +I + I +FFF +D 
Sbjct: 125 TEDQILDVVAALKSQL-----TGLGQRVLSISLASVRSLFNLLIYMILVPIMVFFFLKDK 179

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I   +       +    ++I   V + I +   G     +         + +  +   
Sbjct: 180 SKIINYIKMFMPKDY-TLTRRIWHDVDRQIGNFVRGKVWEILIVWGAAYGLFLIIDLNYA 238

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPF 299
           + L  +  I  ++P  GA +    V++    +          + G   L I+D   L P 
Sbjct: 239 ILLSFLVGISVIVPYVGATVMTLPVALVAYFQWGWGQEFIYAIIGYTILQILDGNLLVPL 298

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           L+   + L  +     ++      G  G+F    L  L+  I      A +       
Sbjct: 299 LLSEVVNLHPVAIIVAILFFGGIWGFWGVFFAIPLATLVQSIINAWPRAGQPQPPAPK 356


>gi|297155054|gb|ADI04766.1| integral membrane protein [Streptomyces bingchenggensis BCW-1]
          Length = 341

 Score = 73.7 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 51/313 (16%), Positives = 104/313 (33%), Gaps = 15/313 (4%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
             V   L++     P+                 +A +  + + +  L  +      E   
Sbjct: 37  VAVFLGLVVTALLRPLADLLERLVP--RPLAVAVALIGSIVVVLGLLALVGSVAAAEAGR 94

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L+ +          + RWL   P  +    L        Q L     TF+ T+    I R
Sbjct: 95  LLGEFRGGVGR---ISRWLEQPPFRIKHGTL--------QGLHERISTFVATHRGTLISR 143

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
            A       ++        +    FF   G  +     +       + W + +R      
Sbjct: 144 -ALSGANRVVEALTGAALALFCSVFFIYGGDRMWLWFHAQLPETARSPWDRAARAAWSTF 202

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLL 270
                G+ I+A     ++G A +L  VP  + L V+      IP  GAPI+    ++  L
Sbjct: 203 AGYTRGIIIVAASNATLVGIALFLLRVPLALPLTVLVFFATFIPLIGAPIALAVATVVAL 262

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
                  A  + +   +   I    L P ++   ++L  +     ++GG    G++G  +
Sbjct: 263 AGRGPVIAAAVLVLIVVIGQIEGHVLHPLVMSWAVQLHPVVVAISVIGGSLVAGVIGAIV 322

Query: 331 GPVLMALIAVIWK 343
              +++++  + +
Sbjct: 323 AVPMVSVVWSVVR 335


>gi|153811071|ref|ZP_01963739.1| hypothetical protein RUMOBE_01462 [Ruminococcus obeum ATCC 29174]
 gi|149832959|gb|EDM88042.1| hypothetical protein RUMOBE_01462 [Ruminococcus obeum ATCC 29174]
          Length = 273

 Score = 73.7 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 87/232 (37%), Gaps = 3/232 (1%)

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI---FLDYCLSIIFMIIALF 175
             +L  +   +P        + L     + +    S  G I      + ++  F    LF
Sbjct: 40  IMKLVDQVQFNPDQAIKWGISLLGNGAGNMMNTTMSAVGSIVSGLATFFIAFSFACYVLF 99

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
              +    I + + +         + KI  +  +   +   G  + A+  G +      +
Sbjct: 100 QKEKLHVQIRKVVFAFLPKKKADAFLKICSLTYRTFANFLAGQCLEAVILGCMFVVILSI 159

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
            G+P  + +GV+ A  A+IP        AV  +L+   N   A    +   +   I    
Sbjct: 160 LGMPYALLIGVLIAFTALIPIFGAFIGCAVGSFLIFMVNPKQAILFIIVFLVLQQIEGNL 219

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           + P +VG  + LP +     +  G   MG++G+ +   L+++   I+++S +
Sbjct: 220 IYPHVVGESVGLPSIWVLAAVTIGGNLMGIVGMLVFIPLLSVFYTIFRDSYI 271


>gi|187777381|ref|ZP_02993854.1| hypothetical protein CLOSPO_00937 [Clostridium sporogenes ATCC
           15579]
 gi|187774309|gb|EDU38111.1| hypothetical protein CLOSPO_00937 [Clostridium sporogenes ATCC
           15579]
          Length = 351

 Score = 73.3 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 49/333 (14%), Positives = 120/333 (36%), Gaps = 26/333 (7%)

Query: 15  MIMFIILVSLYFL-----KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           +I+F I+ ++ FL       +  P + A +         +  I K +  ++  + I T+ 
Sbjct: 11  LILFFIIYTISFLIFFKTLPYTLPFVLAFLFALALKKPANYLIKKLKIKNSLASFIVTLI 70

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              + I  L +     + E+ +                          +   ++  +L+ 
Sbjct: 71  FFSIIITLLFWGINSLVHEVIDFGKNTQTYLYSHEDQ--------ISNYVDNIYRYYLNL 122

Query: 130 PQSLKILSETFLKTN---GIDFIPRFASRFGMIFLDYCLS-------IIFMIIALFFFYR 179
           P S+    E  +  +     + I    SR    F+    S       I+F +++ +FF +
Sbjct: 123 PPSIIDSIEKTIGNSFSKISNIIVFITSRIVSSFIGLLTSIPYILMLILFTLLSTYFFTK 182

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D      ++  +  +   + + +I     K++    L    +           +++  + 
Sbjct: 183 DITKHDNKISKIIFNEHSSKFPQIYLESKKMLSGYILSYLTLIGITFFETLIVFFIFNIK 242

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
             +   +I AI   +P  G    +  ++ I++L+  N      L +   + + I+ + L 
Sbjct: 243 YSIMFSIIAAIADFLPILGIGSIYVPLALIHILVYKNYVVGIGLLI-SYVAVSIIRQILE 301

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           P L+   + L  +     +  G++  G+ G+F 
Sbjct: 302 PKLLSSSLGLHPVSVLAAIFIGLKANGISGMFF 334


>gi|33152348|ref|NP_873701.1| putative permease [Haemophilus ducreyi 35000HP]
 gi|33148571|gb|AAP96090.1| putative permease [Haemophilus ducreyi 35000HP]
          Length = 351

 Score = 73.3 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 67/349 (19%), Positives = 129/349 (36%), Gaps = 21/349 (6%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R+   +PQ I    I+ +    LYF      P+L A++  +   WPI       K     
Sbjct: 10  RKKFNDPQAIALLGILLVGFGILYFFSDLLMPLLVAIVFAYLLEWPIKLLSYHLKMPR-- 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEM-KELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
              + + + V+  FI    FLF + +  +  + V+ +         +  W+  +P     
Sbjct: 68  ---LFSLILVLGSFISLCTFLFIFLLPNLWNQAVTFIRDLPSMFNLLNAWIQALPEHYPE 124

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              +    S   SLKI   +F ++     +    S  G+    + + ++      FF  +
Sbjct: 125 LIDYAMLDSLMNSLKIKILSFGESLLTLSVNSIISLVGLGIYAFLVPLMV-----FFLLK 179

Query: 180 DGFSISQ---QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
           D     +   ++      L    W ++ + +   IR   L + I+AI    V  + +   
Sbjct: 180 DKTLFIRSFVKILPKNRRLVTNVWFEMQQQIANYIRGKVLEILIVAI----VTYAIFLFF 235

Query: 237 GVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-K 294
           G+   + L V   +  +IP  GA +    V++  L++  I       L   +   ++D  
Sbjct: 236 GLRYPLLLSVAVGLSVLIPYIGAVLVTIPVALIALLQFGISPEFYYLLLAFVISQLLDGN 295

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            + PFL    + L  L     ++      G  G+F    L  L+  + K
Sbjct: 296 LIVPFLFSEAVNLHPLTIIVAVLIFGGLWGFWGVFFAIPLATLVKAVIK 344


>gi|313836726|gb|EFS74440.1| conserved hypothetical protein [Propionibacterium acnes HL037PA2]
 gi|314929868|gb|EFS93699.1| conserved hypothetical protein [Propionibacterium acnes HL044PA1]
 gi|314972295|gb|EFT16392.1| conserved hypothetical protein [Propionibacterium acnes HL037PA3]
          Length = 404

 Score = 73.3 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 104/336 (30%), Gaps = 28/336 (8%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYF-------LKGFFAPVLSALIIGFTSWPIYSSFISKK 55
           E   N  G+ +  I+ + + + +        L    AP+   L +  T++PI++  +  K
Sbjct: 49  EAATNKHGLPKLTIVLLTVAAAWLGLSFLHELSSVIAPLFFGLNLLITAYPIHTWLVKHK 108

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
                  A  A  +V+ +    +  + +     + +L S                  IP 
Sbjct: 109 CPR-WISATAAGTTVIVVLAAGVAGMVWSVAAMINQLQSY-----------------IPQ 150

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
                       +     + +    LK      +    +            II ++  + 
Sbjct: 151 MEKIYTQLLHWSTQLGYSQEVITDKLKKIDPQQVMSVITSVASDTTSIVTMIIVILTGMI 210

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F   D   +  +L   G                  IR  +L  T+  +   L   +A  +
Sbjct: 211 FMVMDTPQMHDRLRMAGNRKPDVVLA--LESFSSGIRKYWLVTTVFGLIVALFDWAALLI 268

Query: 236 AGVPSHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
            GVP      + + +   IP    I      ++  L K     A  + +  +   F++  
Sbjct: 269 IGVPLAGVWALFSFLTNYIPNIGFIVGVIPPALLALFKDGWVAAVAVVVSYSALNFVIQS 328

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            ++P   G  + L    +F  L+      G LG  I
Sbjct: 329 IIQPKFAGDAVGLTPTMSFVSLLLWGWVFGALGTLI 364


>gi|331003207|ref|ZP_08326714.1| hypothetical protein HMPREF0491_01576 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412860|gb|EGG92240.1| hypothetical protein HMPREF0491_01576 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 371

 Score = 73.3 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 49/329 (14%), Positives = 126/329 (38%), Gaps = 10/329 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  F A  + A II       Y   + KK  +   +  +A    +  F++ ++ L    +
Sbjct: 40  LVPFVAGAIMAYIINILMD-FYEDLLLKKFHNKKIIRTVAIALSIITFVLVIVLLLGLII 98

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE----TFLK 142
            ++ ++++ ++        +   +SDI    + +++ +      +++ I S         
Sbjct: 99  PQLIKIITSIMYV--KPDYINSLISDIGNNKFINDILSSMNIDIKNINIASYLTRLIQNV 156

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            +G+  +          F +  +S+   ++   +   D   I+ Q D L     P+  + 
Sbjct: 157 MSGVGNVLTGVISGISGFFNTVISLFMAVVFAIYILVDKERIALQGDKLLRAFMPSQRET 216

Query: 203 I---SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
           +    ++     ++ F+     AI  G++L     +A +P   ++ ++  + A+IP    
Sbjct: 217 VIDTLQVFNTSFKNYFISQVKEAIILGVLLYIVMLIARLPYASSISILVGVTALIPVIGA 276

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
            +   +   +++  ++ +     +   I     +  + P +VG  + LP +     +  G
Sbjct: 277 YAGLFIGALMILTKSLQSMVIFIILHTIVQQFENNVIYPRVVGSSVGLPGMWVIVAVALG 336

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMA 348
               G+ G+F+   + A +  I K     
Sbjct: 337 GSMGGIFGVFVAVPVAASLYFILKRETEK 365


>gi|291618363|ref|YP_003521105.1| PerM [Pantoea ananatis LMG 20103]
 gi|291153393|gb|ADD77977.1| PerM [Pantoea ananatis LMG 20103]
 gi|327394756|dbj|BAK12178.1| putative permease PerM [Pantoea ananatis AJ13355]
          Length = 356

 Score = 73.3 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 98/305 (32%), Gaps = 15/305 (4%)

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS 111
           + +   + ++   I  V    + +V +L +      +   L             +P  L+
Sbjct: 59  LQRIGCTRSWATSIVLVLFAGILLVLVLIVAPVAWQQGINLTR----------DLPNMLN 108

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETFLK--TNGIDFIPRFASRFGMIFLDYCLSIIF 169
            +             L     + ++ E      +   D + +++    +  +   + ++ 
Sbjct: 109 KLYLYAAGLPRRFPALVDAGIIDVIVENLRGRLSGVGDSLVKYSLASLVGLMTLMIYLVL 168

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
           + + +FF  +D   +   +  +          ++ + + + I +   G  +  +  G+  
Sbjct: 169 VPLMVFFLLKDKEQMLNAVRRVLPRNRGLAG-EVWQEMNQQITNYIRGKVLEMVVVGIAS 227

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAI 287
             A+   G+   + L V+  +  +IP  GA +    V  + L   G       L     +
Sbjct: 228 WLAFMFLGLNYSLLLAVLVGVSVLIPYIGAMLVTIPVIGVGLFQWGLDSEFWTLLTVYLV 287

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              +    L P L    + L  L     +V      G  G+F    L  L+  +      
Sbjct: 288 IQALDGNVLVPILFSEAVNLHPLVIILSVVIFGGMWGFWGVFFAIPLATLVKAVVHAWPE 347

Query: 348 AIKEN 352
           A  + 
Sbjct: 348 APLDE 352


>gi|227872737|ref|ZP_03991061.1| possible permease [Oribacterium sinus F0268]
 gi|227841415|gb|EEJ51721.1| possible permease [Oribacterium sinus F0268]
          Length = 404

 Score = 73.3 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 48/344 (13%), Positives = 113/344 (32%), Gaps = 20/344 (5%)

Query: 31  FAPVLSALIIGFTSWPIYSS------------FISKKEESSTFLAVIATVSVMCLFIVPL 78
             P++   ++ +   P+Y+             F  K ++ ST  + +ATV  +    +  
Sbjct: 47  LMPIIYGAVLAYLMSPVYNFVVKISEVLLVKLFRKKSKKQSTASSFLATVCSLLFLTLIG 106

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGI-PVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
             L    + E+ + +  + +     I      +  +      +  + + L    S    S
Sbjct: 107 GSLVSLLIPELTKSIYNLYMTLPDAINRSYERIQTLLTNYPEARGYVEDLYTEISAFFSS 166

Query: 138 ETFLKTNGIDFIPRFASRF-------GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           +       +  +   A+ F         +  +  + +I M+  L           + L +
Sbjct: 167 KPESAQTILGHLQNIAAFFRDGIWNTFTVVKNILIGLIVMVYLLNLKKTLKLQFRKLLFA 226

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +          +  + V K+     LG  I ++  G++      +  +P  + + VI  +
Sbjct: 227 IFSKEKAKGIIEELQYVHKMFGGFILGKIIDSVIIGILTFFVLSIMKMPYTLLVSVIIGV 286

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             ++P   P       I L++  +   A    +       +    + P ++G    L   
Sbjct: 287 TNVVPFFGPFVGAIPCIILIMLSSPLQALYFAIAILAIQQLDGNVIGPKILGDSTGLSSF 346

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
              F ++      G +G+ I   L A+I    +       E K+
Sbjct: 347 WVLFSIILFGGLFGFVGMIIAVPLWAVILNSIRRYANKRLEKKQ 390


>gi|269128813|ref|YP_003302183.1| hypothetical protein Tcur_4624 [Thermomonospora curvata DSM 43183]
 gi|268313771|gb|ACZ00146.1| protein of unknown function UPF0118 [Thermomonospora curvata DSM
           43183]
          Length = 393

 Score = 73.3 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 42/291 (14%), Positives = 103/291 (35%), Gaps = 17/291 (5%)

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS 111
           + +        A+   + ++    +P   +    + E     S      +    V +WL 
Sbjct: 85  LRRLGTPPWLAALAGILVLLGAIALPFTLITNRVVNE---WSSLRRQTEEGLDRVRQWLL 141

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
           + P  +   ++ +      ++L+      +           ++   ++ L + L      
Sbjct: 142 EGPLSVSERQINSTVDGLIRTLREALPDPVGGATAAAQGATSALLALVLLFFLL------ 195

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
                  +DG  +++   S        +    +    + + +   G  ++A+ +G+ +G 
Sbjct: 196 -------KDGEKMARWALSQLPRRHRGWVAVAAVEGWRTLVAYIRGTFLVAVIDGVGIGL 248

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
           A  + GVP  + LG++T I A IP        AV++ + +  N      L L   + +  
Sbjct: 249 ALVIIGVPLALPLGLLTFIAAFIPIVGATVAGAVAVLVALVSNGLGDALLTLGAVLLVQQ 308

Query: 292 VD-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            +   L+P + G  ++L        +  G    G+ G  +   + A+   +
Sbjct: 309 AEGNLLQPVIQGRSLRLHPAVILIAVTAGTLLGGIAGAVVAVPVTAITYRV 359


>gi|300772600|ref|ZP_07082470.1| permease [Sphingobacterium spiritivorum ATCC 33861]
 gi|300760903|gb|EFK57729.1| permease [Sphingobacterium spiritivorum ATCC 33861]
          Length = 353

 Score = 73.3 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 59/351 (16%), Positives = 123/351 (35%), Gaps = 23/351 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           MR+ +  P  I    I+  I++  Y  +       P++  ++      P+ +    K   
Sbjct: 1   MRKFISLPFYIKLACILISIVILGYLARIGDTIIVPLILGILFAMLLTPMSTLLEKKLRF 60

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
             T   ++     + LF   L    Y    ++  L              P +   I  G+
Sbjct: 61  PRTLAGIV----CIVLFFGGLATGLYLLASQLSMLQEDW----------PAFKHQILDGV 106

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY---CLSIIFMIIAL 174
              + W  H    Q  + ++   L       +       G   +      + ++F  +  
Sbjct: 107 EVVQDWVNHQFGIQYNEQMN--LLNKTASKSVDSGTLILGTALMSLSSIAIFLVFTFLYT 164

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           FF       I + L  L          +I   V  V++   +G+ +  +    ++  A  
Sbjct: 165 FFILIYRGHIVRFLLYLNAKEDHPVVLEIVAEVQYVVKRYLIGLLLQMLIVTTLVYIALA 224

Query: 235 LAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
           + GV   + L +IT +  ++P  G   S   V++         +   +F+  +I   I  
Sbjct: 225 IIGVKYSLLLAIITGVFNVLPYIGIFSSMFIVALITFATSTFSHVLFVFVAMSIIHMIDS 284

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             + P +VG  +K+  L     +V G    G+ G+F+   L+A++ ++   
Sbjct: 285 NVIVPKVVGSKVKINSLFAMMAIVCGELIWGISGMFLAIPLLAIVKIVMDR 335


>gi|124268111|ref|YP_001022115.1| transport protein [Methylibium petroleiphilum PM1]
 gi|124260886|gb|ABM95880.1| transport protein [Methylibium petroleiphilum PM1]
          Length = 405

 Score = 73.3 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 54/343 (15%), Positives = 111/343 (32%), Gaps = 21/343 (6%)

Query: 15  MIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           + +  +L  L  L+     F P+L  L+  +   PI    +  +   S   AV+    + 
Sbjct: 53  LAVLAVLACLVALRWASAVFIPLLLGLMFSYALSPIVDRMVRWRIPRSLAAAVLLLAILA 112

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-----MWASELWTKH 126
                      Y    +  EL+  +  A Q      R   + P         A     + 
Sbjct: 113 G-----AGSTAYSLGDDASELIESLPAAAQKLRQAVRAARNEPTSKMETMQKAVTQLEQA 167

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII---FMIIALFFFYRDGFS 183
                S         +                  L     I     +    +F    G S
Sbjct: 168 AEEAASSAAGQRGVQRVQIEPRKFSIRDYLWSSTLGLAWLIGQATVVCFITYFLIASGNS 227

Query: 184 ISQQLDSLGEHLFPAYW--KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +++  +    F       +    + + I+   L   +I+   G+    A+   G+   
Sbjct: 228 FRRKMVKIAGPTFAQRRVTVEALDEITEQIQRYLLVQLLISALVGVATWLAFLWIGLEHA 287

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPF 299
              G++ A++ ++P  G+       ++   ++ G +  A  +     +   I    + P+
Sbjct: 288 AVWGIVAAVLNLVPYIGSIAVTVGSALVAFLQFGTLDMALVVGGVSLVLHCISGYLITPW 347

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
           L     ++  +  F G++      G+ GL +G P+LMA+ AV 
Sbjct: 348 LTSRTSRMSPVVVFVGVLAWGWLWGIWGLLLGVPILMAVKAVC 390


>gi|119476473|ref|ZP_01616824.1| membrane protein, PerM family [marine gamma proteobacterium
           HTCC2143]
 gi|119450337|gb|EAW31572.1| membrane protein, PerM family [marine gamma proteobacterium
           HTCC2143]
          Length = 357

 Score = 73.3 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 50/338 (14%), Positives = 107/338 (31%), Gaps = 18/338 (5%)

Query: 17  MFIILVSLYFLKGFFAPVLSALII-GFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + +++     L      ++ A ++ G  +             S  F   + T  V  L +
Sbjct: 29  LVVLMTMGNVLGPVITSIILAFMMQGVITQLTKRRVPRWLAISVAFSIFVGTFFVALLVV 88

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +PL +          EL   +    Q  + +P             +      +    +  
Sbjct: 89  LPLAW--NQMTNLFNELPGMLSKWQQLMLVLPEQYPSFISETQIQDWILLAKAELGQV-- 144

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                        +  F+       +   + ++ + I +FFF +D   I     S   H 
Sbjct: 145 ----------GQVVVSFSISSIPNLIGLLIYLVLVPILVFFFLKDHLLIVAWFKSFLPHE 194

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
            P   K I   + + + +   G  I  +  G++   A+ + G+     LG++  +  +IP
Sbjct: 195 RPMLTK-IWHEMDEQVANYVRGKAIEIVIVGVISYIAFVILGLNYAALLGLLVGLSVVIP 253

Query: 256 -GGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
             GA +    +++    +    +    L    A+   +    L P L    + L      
Sbjct: 254 YIGAAVVTVPIALIAYFQWGWGSDFLTLLGVYAVIQGLDGNVLVPLLFSEAVNLHPTAII 313

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             ++      GL G+F    L  LI  +      +  +
Sbjct: 314 LAVLVFGGFWGLWGVFFAIPLATLIKAVLNAWPSSRHD 351


>gi|253581604|ref|ZP_04858829.1| permease [Fusobacterium varium ATCC 27725]
 gi|251836674|gb|EES65209.1| permease [Fusobacterium varium ATCC 27725]
          Length = 374

 Score = 73.3 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 106/326 (32%), Gaps = 8/326 (2%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
           G+  P++ AL I     P+ S   ++ +        I  V V+      +  +       
Sbjct: 39  GYLIPMIYALFISIFLEPLVSKIENRFKLKRWVSVSIVIVLVIIGVAGFVGLILPQLGKS 98

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
            KEL +K+    +    +  ++  +   +   EL        +   +        N  +F
Sbjct: 99  FKELYNKLPYMQEQ---LGDFIKRVLDYLKEKELLVIGEKQIEENIVNLLKRNIGNLQEF 155

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA----YWKKIS 204
                       +              F   D     + L+++   +       Y     
Sbjct: 156 GISVLLNIMWWTVALS-KFFIGFFLAVFILLDKEYFVKFLNNILTIILGKEKGIYMSDFL 214

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
                V+ +   G  I +   G V     +  GVP  +   ++  I  MIP    I   A
Sbjct: 215 NQSRNVLLNYVWGRIIASAFVGAVTFIVLFFTGVPYALLSSLMIGIGNMIPYVGSIVAGA 274

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           V+I+L+I         LF+   +   +    + P +V   + +        ++ G   MG
Sbjct: 275 VAIFLVILAEPSKIIYLFIAMMVGQAVDGWIVGPRIVSETVGMSTFWVIVAVLIGGSLMG 334

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIK 350
            +G+F G     ++ ++++  +  I 
Sbjct: 335 PVGMFFGVPAFGIMKLVYEIQVKKID 360


>gi|124007643|ref|ZP_01692347.1| putative permease [Microscilla marina ATCC 23134]
 gi|123986941|gb|EAY26706.1| putative permease [Microscilla marina ATCC 23134]
          Length = 379

 Score = 73.3 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 53/320 (16%), Positives = 110/320 (34%), Gaps = 15/320 (4%)

Query: 10  GIMRWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            ++R  I   ++   +    +L     P   A ++ +   P+      K    +  ++V+
Sbjct: 13  RVIRTAIWVAVIWGFFKALQYLSDILIPFAIAALLAYLINPLVIFLQEKVRIRNRVISVL 72

Query: 66  ATVSVMCLFIVPLLFLFYYGM-LEMKELVSKVVLANQHGIPVPRWLSDIPGGMW--ASEL 122
            ++ V+   +  L  +    +  ++  +   V    Q      +    IP  +W   + L
Sbjct: 73  LSLIVVFGLLTGLALILIPLVTKDISHMAEIVKGLAQDPQLDMKAQEYIPPSVWKEVNTL 132

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                 H      ++    K    + I  F +      L   + +  +++ L F   D  
Sbjct: 133 LNSDFFHTDKFANMAIDAAKKVLPNVIGLFNNVL--HLLLSIMGLAIILLYLVFILLDYN 190

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I  Q   L    +    K +S    K + S F   T+IA   G++    + +  +P  V
Sbjct: 191 KIMVQWTDLLPEQYHHTIKDVSTNFKKAMGSYFRAQTVIASLVGILFAIGFSIIDLPMAV 250

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIK------GNIFNATCLFLWGAIELFIVDKTL 296
             G+   ++ ++P    I+F   +++ L+               +    AI   I D  L
Sbjct: 251 VFGLFVGLLNLVPYLQNIAFIPAALFALVHSLDTGENFWIMMLLVLAIFAIVQLIQDALL 310

Query: 297 RPFLVGGPIKLPFLPTFFGL 316
            P ++G  I L        L
Sbjct: 311 TPKIMGDAIGLNPAVMLLSL 330


>gi|59712528|ref|YP_205304.1| inner membrane protein [Vibrio fischeri ES114]
 gi|197336366|ref|YP_002156749.1| transporter [Vibrio fischeri MJ11]
 gi|59480629|gb|AAW86416.1| predicted inner membrane protein [Vibrio fischeri ES114]
 gi|197317856|gb|ACH67303.1| transporter [Vibrio fischeri MJ11]
          Length = 354

 Score = 73.3 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 51/340 (15%), Positives = 124/340 (36%), Gaps = 14/340 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +    I+ +  +++YF     AP+L A+++ +   WP+    +++         ++
Sbjct: 15  DPHAVSLAAILIVGFITIYFFGHLIAPLLVAIVLAYLLEWPVAK--LTRIGLPRVLSVML 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + L ++ +  L      ++  L++ V         +  +LS +P           
Sbjct: 73  VIILFISLMLLAVFGLVPTIWTQVGNLINDVPSMFNG---LNSFLSSLPERYPEFIQPQS 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +  +++++      ++     +    S          + +I + + +FF  +D   + 
Sbjct: 130 IETLLETIRVKVLGMGESIVKGSLSSLVS-----LAALGVYLILVPLLVFFLLKDKDEMV 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             + +L          K+   + + I +   G  +  +  G V    +++  +   + L 
Sbjct: 185 GTMSNLLPK-NRRLATKVWLEMNEQISNYIRGKVVEILIVGTVSYLTFFIMDLRYALLLA 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATC-LFLWGAIELFIVDKTLRPFLVGG 303
           V+     +IP  GA      ++I  L +  +      L L  AI   +    L P L   
Sbjct: 244 VMVGFSVLIPYIGAAAVTVPIAIVALFQWGLTPDFYWLLLAYAIIQALDGNVLVPVLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            + L  +     ++      G  G+F    L  L+  +WK
Sbjct: 304 AVNLHPVAIIVSVLVFGGLWGFWGVFFAIPLATLVKAVWK 343


>gi|24374447|ref|NP_718490.1| hypothetical protein SO_2920 [Shewanella oneidensis MR-1]
 gi|24349024|gb|AAN55934.1|AE015731_4 conserved hypothetical protein [Shewanella oneidensis MR-1]
          Length = 368

 Score = 73.3 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 50/328 (15%), Positives = 108/328 (32%), Gaps = 23/328 (7%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
            + IIL  +        P + +  I     P        +     +LAVI  +  + L  
Sbjct: 19  FVVIILAGIKAASPIVVPFVLSCFIAVICNPAIGLMTKYRV--PKWLAVILLMCFIVLMG 76

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + L  L    + E  + + +                           W  H     +++I
Sbjct: 77  LWLASLVGSSINEFSKQLPQYRNQLVEQFS-----------------WVLHKLQALNIQI 119

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
             E  L            +       +   ++  +I+ + F   +  S+ ++L  L    
Sbjct: 120 SKEQVLAYFDPGMALSMTTNMLSGVGNVMANLFLIILTIVFMLFEASSLPKKL-HLALDD 178

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                ++I R +  V +   +   ++++  GL++G      GV   +   VI  +   IP
Sbjct: 179 PDMRLQQIDRFLQSVNQYMVIKT-LVSLATGLIVGVGLAFIGVDYALLWAVIAFLFNYIP 237

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G+ I+     +   I+     A    +       ++   + P  +G  + L  L  F 
Sbjct: 238 NIGSIIAAIPAVLLAFIQLGPAAAGGTTMLYIGANMVMGNVVEPKFMGRGLGLSTLVVFL 297

Query: 315 GLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            L+     +G +G+ +  P+ M +   +
Sbjct: 298 SLIFWGWLLGSVGMLLSVPLTMVVKIAL 325


>gi|254381927|ref|ZP_04997290.1| integral membrane protein [Streptomyces sp. Mg1]
 gi|194340835|gb|EDX21801.1| integral membrane protein [Streptomyces sp. Mg1]
          Length = 436

 Score = 73.3 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 44/308 (14%), Positives = 102/308 (33%), Gaps = 21/308 (6%)

Query: 17  MFIILVSLYFLKGFFA-------PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           + ++   L+ L    +         ++AL++     P       +          +  + 
Sbjct: 80  LLLLAGMLWVLMKVISEVRLVVLAFVAALLVTALLQPFVVRL-RRLGLPRGLATAVTAIL 138

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              +  +   F+ +  M  + +L  +V         +  WL D P  +   ++       
Sbjct: 139 GFVVIGLVGWFVVWQVMENLDDLSDRVRDGINE---LKLWLLDSPFHVTEKQI------- 188

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              +       + TN  + I     +   + ++    ++  + +  F   DG  I   + 
Sbjct: 189 -NDIAKNLTDTIGTNTEE-ITSAGLQGVTVLVEVLTGMLLAMFSTLFLLYDGKRIWNWVL 246

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L                 + + +   G  ++A+ + + +G   +   V   V L V   
Sbjct: 247 GLVPAPARPGVAGAGPRAWRTLTAYVRGTVLVALIDAVFIGLGLYFLDVTMAVPLAVFIF 306

Query: 250 IMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           + A IP  GA IS     +  L+   +F A  +     +   I    L+PF++G  +++ 
Sbjct: 307 LFAFIPLVGAVISGALAVVVALVTQGVFTALSVLAVVLLVQQIEGHVLQPFILGRAVRVH 366

Query: 309 FLPTFFGL 316
            L     +
Sbjct: 367 PLAVVLSV 374


>gi|254520064|ref|ZP_05132120.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
 gi|226913813|gb|EEH99014.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
          Length = 388

 Score = 73.3 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/304 (15%), Positives = 108/304 (35%), Gaps = 11/304 (3%)

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
           K +       + + ++   +  + + FL    +  +  LV+ +     +      ++++I
Sbjct: 81  KLKSKRGLAILFSYITTFFIISMFVKFLLPQLIDSVVGLVNDIPSYITNTT---NFVNEI 137

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
              +   + +++ L    +  +       TN I  +  F +       +  L II  +  
Sbjct: 138 IMKLNIEDQYSQVLIDNFNSLVNYIIRFATNLIPALGGFLASVASSIWNVILGIIVSV-- 195

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWK----KISRIVPKVIRSTFLGMTIIAIGEGLVL 229
             +   D   +      +   LFP  +     K+            +G  I ++  G++ 
Sbjct: 196 --YLLIDKEKLCALSKKITYGLFPESYADEIIKLVDRSNYTFGRFLVGKIIDSLIIGVLT 253

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
                +  +P  + + VI  I  +IP   P      S  +++  +   A    L      
Sbjct: 254 FIILTIFKMPYTILVSVIVGITNIIPFFGPFIGAIPSFIIILFVSPVQALWFLLIILFIQ 313

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            +    + P ++G  I +      F ++   + +G++G+ IG  L A+   I KE I + 
Sbjct: 314 QLDGNVIGPKILGDSIGISAFWILFSILVAGKLLGIVGMIIGVPLFAIFYSIVKEFIESK 373

Query: 350 KENK 353
              K
Sbjct: 374 LRKK 377


>gi|126335091|ref|XP_001363838.1| PREDICTED: similar to likely ortholog of H. sapiens chromosome 9
           open reading frame 5 (C9orf5) [Monodelphis domestica]
          Length = 1098

 Score = 73.3 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 9/190 (4%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDG---FSISQQLDSLGEHLFPAYWKKIS-RIVPKVIR 212
           G   L++ LS++  +  LF+        +   + + SL     P     I  + V + IR
Sbjct: 725 GTALLNFVLSLVIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIVGQSVEEAIR 784

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI 271
             F     +A   GL     + + G+        + AI+  +P  G   +     + L +
Sbjct: 785 GVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAIPAVLDLWL 844

Query: 272 K-GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             G    A  L ++  +  + VD  +   + GG        T   + GG   +GL G  I
Sbjct: 845 TQGEGCKAILLLVFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAII 901

Query: 331 GPVLMALIAV 340
           GP+L+ ++ V
Sbjct: 902 GPILLCILVV 911


>gi|146312618|ref|YP_001177692.1| hypothetical protein Ent638_2977 [Enterobacter sp. 638]
 gi|145319494|gb|ABP61641.1| protein of unknown function UPF0118 [Enterobacter sp. 638]
          Length = 353

 Score = 73.3 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/296 (13%), Positives = 97/296 (32%), Gaps = 11/296 (3%)

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS 111
           + K   S  + + I  +  + + ++    +      +   L+  +         +  + +
Sbjct: 59  LEKIGCSRRWASSIVLILFVGILLLMSFVVLPIAWQQGINLIRDMPGMLNK---LSDFSA 115

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
            +P    A        +  ++++    T       D + +++    +  L   + ++ + 
Sbjct: 116 TLPRRYPALMDAGIIDAMAENMRARIMTM-----GDSVVKYSLASLVGLLTLAVYLVLVP 170

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
           + +FF  +D   +   +  +          ++ + + + I +   G  +  I  G+    
Sbjct: 171 LMVFFLVKDKEQMLNAVRRILPRNRGLAG-QVWKEMNQQITNYIRGKVLEMIVVGVATWI 229

Query: 232 AYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIEL 289
            + + G+   + L V+     +IP  GA +    V  + L   G        F    I  
Sbjct: 230 GFVIFGLNYSLLLAVLVGFSVLIPYIGAFVVTIPVIGVALFQFGLGTEFWSCFAVYLIIQ 289

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            +    L P L    + L  L     +V      G  G+F    L  LI  +    
Sbjct: 290 GLDGNLLVPVLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVHAW 345


>gi|55379912|ref|YP_137762.1| hypothetical protein rrnAC3369 [Haloarcula marismortui ATCC 43049]
 gi|55232637|gb|AAV48056.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 368

 Score = 73.3 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 53/355 (14%), Positives = 123/355 (34%), Gaps = 33/355 (9%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            M   + ++    + + +V       F A +  ++ + +++   Y+S    +  +     
Sbjct: 2   YMDEKRFVVALFGLAVAVVVGVLAYQFIAALTVSVFLYYSTRRYYTSLRRLRLPARVRAV 61

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           V+     + L ++ + +     ++E ++ V++  L +     V           W     
Sbjct: 62  VVMASLAIPLLLL-VSYAAVLLIIEARQFVTQYALVDVAATHV----------SWLDGAE 110

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
           +      + L    ++      +DF+   A     +   + L++    I  ++   DG  
Sbjct: 111 SVPDLTVEGLYSAYQSGQLKPFVDFLSENAMVLTSVASQFFLNLFITTIVTYYLLVDGRR 170

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY--------WL 235
           I   L    +    A  ++    V + + +   G  +  +   L+  +A+          
Sbjct: 171 IRGWLLRFDD---GAIIREYLEAVDEELEAVLFGNLLNVLAISLIAIAAFTGYNVVAPAA 227

Query: 236 AGVPSHVALGVITAIMAMIP-GGAPISFTAV----SIYLLIKGNIFNATCLFLWGAIELF 290
             VP     G +T I ++IP  G  I +  +    ++ +++ G       +  +  I + 
Sbjct: 228 VEVPYPTLAGALTGIASLIPVVGMKIIYLPLTGITALPVVLDGQSSLLAYVLGFLLIAVV 287

Query: 291 IVDKT----LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +VD      LRP L G                G   +G  GLF  P+L+ +    
Sbjct: 288 VVDTIPDLLLRPLLSGEST--HVGLLMLAYTLGPVVLGFYGLFFAPILLVVGMTF 340


>gi|28209877|ref|NP_780821.1| hypothetical protein CTC00106 [Clostridium tetani E88]
 gi|28202312|gb|AAO34758.1| conserved membrane protein [Clostridium tetani E88]
          Length = 351

 Score = 73.3 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 49/305 (16%), Positives = 109/305 (35%), Gaps = 5/305 (1%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +  P + A I              K    ++  + I T+    + I  L F     + E 
Sbjct: 31  YSLPFVLAFIFSLILKKPTEFLTKKFSIKNSLSSFITTLIFFTIIIFLLYFSVTSIVKEG 90

Query: 90  KELVSKVV-LANQHGIPVPRWLSDI-PGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            +L        + +   +  +L ++            K +S+     +   +        
Sbjct: 91  IDLGKNTQIYLSNNSENIKTFLKNLEKYYYNLDPDILKTISNNLLTMLSKLSNYTVVITT 150

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            + +             + I F +I+ +FF +D  S   +L S+  +        I    
Sbjct: 151 KLVQITISLLSYIPYIFMLIFFTLISTYFFTKDLSSAKNKLFSIIPNDKSDKISNIFNES 210

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVS 266
            K++ +  L   II +   +     + +  V   + L +I AI  ++P  G    +  ++
Sbjct: 211 KKLLVNYALSYLIIILITFVETLIGFLVLRVNYAIILSIIAAIFDILPILGIGSVYIPLA 270

Query: 267 IY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +  L IK + F A  + +W  + + I+ + L P +V   + +  +     +  G++  G+
Sbjct: 271 LVNLFIKKDYFTAIGVLIWY-LVVTIIRQILEPKIVSSSLGMHPISILAAIFIGLKAAGI 329

Query: 326 LGLFI 330
            G+F 
Sbjct: 330 TGMFF 334


>gi|309810430|ref|ZP_07704260.1| putative membrane protein [Dermacoccus sp. Ellin185]
 gi|308435613|gb|EFP59415.1| putative membrane protein [Dermacoccus sp. Ellin185]
          Length = 379

 Score = 73.3 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 57/362 (15%), Positives = 122/362 (33%), Gaps = 23/362 (6%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFF---------APVLSALIIGFTSWPIYSSFI 52
           RE +     +  W  + ++ +++  L  F+            ++ ++      PI S  +
Sbjct: 10  REAVPYGVRVAAWWSVCLLAIAVGVLAFFWGVTRLGVVTVSFVTGVMFAALLAPIVSWLV 69

Query: 53  SKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD 112
            +    +T  AVIA    +      + F+         E   ++ LA Q       WL D
Sbjct: 70  RRGVGRTT-SAVIAFFVGVGSAAGLIAFVVAQIDDSSGEFARQLTLAEQGAR---HWLVD 125

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
            P  +          +          T L  +  D +   A+  G++      +++  + 
Sbjct: 126 GPLKIDE--------TSASRYTTDLGTTLSNHTADIVGWAAAHVGIVTGGLS-ALLLTLF 176

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
              F   D  SI + +  L       +         + +      + ++A+     +   
Sbjct: 177 CALFLLADDGSIWRWIVRLLPRGAHNHVDLAGAAAWRTLVVYMRSLVLLALLNAAAMLPV 236

Query: 233 YWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
            W A VP  V L V+  + ++IP  G  ++   +     +   +  A  L     + + +
Sbjct: 237 LWFADVPLAVPLTVVIFLGSLIPLVGVLLAAALMFAIAFVGNGLVTALVLVAILTVLVQL 296

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           +   + P ++G  + L  +    G+  G    G  G F    L+A++  + K       E
Sbjct: 297 LGNLVNPLILGRFVDLHPVVILIGVSAGTLLGGAFGAFTAVPLIAVVNNMVKVMRSYHLE 356

Query: 352 NK 353
             
Sbjct: 357 EH 358


>gi|158422562|ref|YP_001523854.1| putative permease [Azorhizobium caulinodans ORS 571]
 gi|158329451|dbj|BAF86936.1| putative permease [Azorhizobium caulinodans ORS 571]
          Length = 364

 Score = 73.3 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 49/335 (14%), Positives = 118/335 (35%), Gaps = 19/335 (5%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +++++++ L+    P +    I +   P+     S+        A+     ++ + +V
Sbjct: 14  LVVLILAMWVLREILLPFVVGTAIAYFLNPLVERL-SRLGIGRMPAALFMIGLLLLVVVV 72

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI--PGGMWASELWTKHLSHPQSLK 134
            LL +      ++ E +            +P +++ +         E   +         
Sbjct: 73  LLLVVLPIMSGQLYEFIQN----------MPSYVTRLQRLVTEENKEWVDQIFGTRLPDI 122

Query: 135 ILSETFLKTNGIDFIPRFASRFG---MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
             S + L + G+ ++    S         L     ++   +  F+   D  S+ + +DS 
Sbjct: 123 QKSLSDLMSQGVSYLLGLLSSLWSGGQALLSVFALVVVTPVVAFYVLCDWNSMVENVDSW 182

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                    +++ R +   +     G  ++ +  G     A  +AG+   + +G+++  +
Sbjct: 183 IPVHQRPVVRRLGREMDMAVAGFVRGQALVCLLLGSYYAIALSMAGLNFGLIIGIVSGFI 242

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF--IVDKTLRPFLVGGPIKLP 308
             IP  G+           +++     A    ++G   +   I    L P LVG  I + 
Sbjct: 243 TFIPYVGSLTGLVLAMGVAIVQFFPDWAMIGTVFGIFIVGQTIEGYILSPKLVGDSIGVH 302

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            +   F L       G +GL +   L A   V+ +
Sbjct: 303 PVWLMFALFAFGYLFGFVGLLLAVPLTAATGVLVR 337


>gi|325479810|gb|EGC82897.1| putative membrane protein [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 408

 Score = 73.3 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 44/372 (11%), Positives = 124/372 (33%), Gaps = 23/372 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLY--------FLKGF--FAPVLSALIIGFTSWPIYSSFISKK 55
            N   +   +I  ++  + +        F++ +    PV+  L+I F      + F +K 
Sbjct: 11  KNKNILKVTIISILVFFAFWYKKDVSEGFVRTYAVIRPVIYGLVIAFIINLPMNFFENKV 70

Query: 56  EES-------STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VP 107
                         + ++ +    +F   +  +    + E+   +S +V      +  + 
Sbjct: 71  FGRFIDRSKHKHLASALSLILSWIVFFGIITIIMTVFIPELVNAISSLVENIPIFMDKLI 130

Query: 108 RWL--SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF---IPRFASRFGMIFLD 162
            +L    +   + A  +   +    ++L      FL    I          S      + 
Sbjct: 131 EYLNNQRLFKEVSAEIIARLNKLDVENLTKEITAFLNGKNIGIWNKTSNILSSVSSWLIA 190

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
             +  +F +           + ++ L +  +     +   ++++             +  
Sbjct: 191 VIMGFVFSLYVSANKKELQTNANKILLANFKEDKVNHINYVAKLSYDSFSKFLETKLLSC 250

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF 282
           +  GL+      +  +P    + ++     +IP   PI  T V + L+   +   +    
Sbjct: 251 LSLGLICFIGMKILKLPMAGMISILVGAFDIIPYFGPIIATGVGMILIFIQSPAQSLIFL 310

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           ++      + +K + P ++G    LP +  F  +  G    G+ G+ +   +  ++  + 
Sbjct: 311 IFVLSIQQVQEKIIYPLVIGKHQGLPAIWIFLSVFLGAGLFGIAGMIMSMPVATILYTLI 370

Query: 343 KESIMAIKENKE 354
           +++     + KE
Sbjct: 371 QDNTKRKLKIKE 382


>gi|168333789|ref|ZP_02692034.1| hypothetical protein Epulo_02740 [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 345

 Score = 73.3 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 59/333 (17%), Positives = 119/333 (35%), Gaps = 10/333 (3%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           R + + II   +Y    +   + +  I+ +    + + F++  ++       + T   M 
Sbjct: 4   RIVNVIIIFGLIYIFVEYIFGLFAPFILAYLIAFLLNPFVNILKKRFNIPRGMGTXLCML 63

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
                L  L +  +  +K+L+S+VV  ++        L      +  SE W   L    +
Sbjct: 64  TI---LSALIWGLVEVIKKLISEVVALSESFPAYKAELEA--KLIEISETWAIPLPAGFT 118

Query: 133 LKILSETFLKTNGIDFIPR---FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                   L     D + +    A             +I M+IA FF  +D + + + + 
Sbjct: 119 SIDDILVELLNWFSDSLAQIVPLAYGTIKFVPSTLFFMIVMLIATFFITKDFYFLRRFMY 178

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +        +  K+   +            I+  G   +  +   +        L V  A
Sbjct: 179 AQVPDNIRPHIDKMQIGLKTAFGGYVKTQFILMGGTFCICFTGLMVLKRDYAFLLSVCIA 238

Query: 250 IMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I    P  G+        +Y LI GN      L     I + I+ + L P ++ G I + 
Sbjct: 239 IFDAFPVLGSGAFLITWGVYHLILGNWSLGLSLLSIYGIIV-IMRQVLEPRVLAGQIGMY 297

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L T   +  G++  G +G+F+GP++   +  +
Sbjct: 298 ALVTVMSIYIGLQVFGAIGVFVGPMIAVSVQTL 330


>gi|292491897|ref|YP_003527336.1| hypothetical protein Nhal_1828 [Nitrosococcus halophilus Nc4]
 gi|292491913|ref|YP_003527352.1| hypothetical protein Nhal_1847 [Nitrosococcus halophilus Nc4]
 gi|291580492|gb|ADE14949.1| protein of unknown function UPF0118 [Nitrosococcus halophilus Nc4]
 gi|291580508|gb|ADE14965.1| protein of unknown function UPF0118 [Nitrosococcus halophilus Nc4]
          Length = 371

 Score = 73.3 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 51/341 (14%), Positives = 111/341 (32%), Gaps = 12/341 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           NPQ     +++ +   ++ F+    APVL++L+I +    I      ++         + 
Sbjct: 14  NPQVAGLALLLVVSFATVIFMGHILAPVLASLVIAYLLEGIVGYLERRRCPR-WLAVPLV 72

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            V+ M  F   +  +      ++ +    +      G      L  +P          + 
Sbjct: 73  FVAFMVAFFGDIFGVIPLLSQQVTQFFQLLPTMIARG---HELLLSLPEHYPDLFSEAQV 129

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            +   ++ +      +      +    S      +   + ++ + + +FFF +D   + +
Sbjct: 130 NNLVSAIHVEVAQLGQEVLSWSLASVTS-----LITLGMYLVLVPLLVFFFLKDKDRLIE 184

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
              S           ++   V   I +   G  I  +    V    +++ G+   + L V
Sbjct: 185 WCKSYLPQ-ERKLIAEVWGEVDFQIANYVRGKCIEILIVWAVSFITFYVLGLRFSMLLSV 243

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           +  +  +IP  GA      V+     + G       +     I  F+    L   L    
Sbjct: 244 LMGLSVLIPYIGAMAITLLVAFVAYFQWGLSTEFAEVLGACVIIQFLDGNVLATLLFAEV 303

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           + L  +     +V      GL GLF    L  +I  + K  
Sbjct: 304 VDLHPVAVIVAIVVFGGVWGLWGLFFAIPLATIIQAVLKAW 344


>gi|239626409|ref|ZP_04669440.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516555|gb|EEQ56421.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 415

 Score = 73.3 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 45/353 (12%), Positives = 120/353 (33%), Gaps = 33/353 (9%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-----------STFLAVIAT 67
           ++  +L  +     P++   ++ +   PIY+   +                        T
Sbjct: 35  LVSGALGKIASILMPIIYGAVLAYLMLPIYNKTRAYTTLKLSKAIKDQSIVDRLAKAAGT 94

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + + +  +  LF   + E+   + ++  +      +  +++++   MW ++++  + 
Sbjct: 95  LVSLVVLVAIVAGLFRMIIPEIYNSIIRLQES------IGEYINNL--TMWMNKMFEDNQ 146

Query: 128 SHPQSLKILSET----FLKTNGIDFIPRFASRFGM------IFLDYCLSIIFMIIALFFF 177
              + +    E     F K      +P  +   G         +    +I+  +I + +F
Sbjct: 147 DFEKFVMPYYEQGVSEFQKWLTEKLVPNMSMIIGQLSTGLLSVVTVVKNILIGVIVMVYF 206

Query: 178 YRDGFSISQQLDSLGEHLFPA----YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
                +++ Q   +   +             R    +      G  + ++  G++   A 
Sbjct: 207 LNIKDTLAAQSKKIVYSILKLKDANRLVSEVRFAHGIFGGFITGKLLDSLIIGIMCFFAL 266

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
               +P  + + VI  +  +IP   P      S +L++  +        ++  I      
Sbjct: 267 QFMDMPYVLLISVIIGVTNVIPFFGPFIGAVPSAFLILMISPMKCLYFLIFILILQQFDG 326

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
             L P ++G    LP     F ++     +G +G+ IG    A+I  +    +
Sbjct: 327 NILGPKILGDSTGLPSFWVLFSILLFGGLLGFVGMIIGVPAFAVIYRLVSAYV 379


>gi|300718851|ref|YP_003743654.1| hypothetical protein EbC_42760 [Erwinia billingiae Eb661]
 gi|299064687|emb|CAX61807.1| Putative membrane protein [Erwinia billingiae Eb661]
          Length = 357

 Score = 73.3 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 48/344 (13%), Positives = 128/344 (37%), Gaps = 22/344 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +++  +    +++   + +IL  +        P L AL +     P+ +  + K      
Sbjct: 4   LQQEKIGQNMLLKMATLIVILAGIKAASEILVPFLMALFLAIVLNPLVTYLMRK--GVRR 61

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            LA+   +  + + I  L+ +    + E  ++  ++    +H + +              
Sbjct: 62  GLAISLVMLGVLIVIGLLVAMVAGSVNEFSDIYPQIRAQMEHKLGI-------------- 107

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
               +H +    + + +E   +    + +   A+     F     +++ +++ + F   +
Sbjct: 108 ---VQHFAATFHINLSTERMAERLDPNSLMNVATTVLSQFSGAMTNVVLLLMTVVFMLFE 164

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +  +L      + P           K +       T+I++  G  +  + +L GV  
Sbjct: 165 VHHLPYKLRFAL--VNPKIRIAGLHKALKGVTHYLALKTLISLITGAAVWLSLFLLGVKF 222

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  GV+  ++  IP  G  I+     I  L+   +F+A  + +   +   +    L P 
Sbjct: 223 SLLWGVVAFVLNFIPNIGPIIAGIPPLIQALLLNTVFDAAMVAVLFTVIHMVFGNMLEPR 282

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           ++G  + L  L  F  L+     +G +G+ +   L ++  ++ +
Sbjct: 283 VMGKGLGLSSLVVFLSLIFWGWLLGPVGMLLSVPLTSVCKILME 326


>gi|284040446|ref|YP_003390376.1| hypothetical protein Slin_5612 [Spirosoma linguale DSM 74]
 gi|283819739|gb|ADB41577.1| protein of unknown function UPF0118 [Spirosoma linguale DSM 74]
          Length = 383

 Score = 73.3 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 51/332 (15%), Positives = 116/332 (34%), Gaps = 16/332 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            + + II+  L+ L+G   P++ A++     +P+     +        LA++  + +   
Sbjct: 20  LLSLVIIVYGLHELQGLLIPLVFAILFSVLLFPLVQRLEN--WGVPRILAIVICLLLALG 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +  L +     +    E++ + V      I   +  +D        +L          +
Sbjct: 78  ALTALFWGVSVQISSFSEVIPQFVKRGSQYIDSIQTFAD-------EQLNIDRKRQVAEI 130

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           K      L   G        +   ++   + + +      L   YRD          + +
Sbjct: 131 KKYLNQALAEGGTILTTTLLATTSILTNLFLVLLFAFFFLL---YRD--FFRSFFYKVFD 185

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
               +    +   + +V++    G+ ++ +  G ++     + GV   V  G   A + +
Sbjct: 186 DTRRSKIDDVMSGIYEVVKDYLAGLVLVILIIGTLMTVGLLILGVDYAVFFGFFGACLVL 245

Query: 254 IP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           IP  G +  S    +  L+ + N   A  +         +    + P++VG  + +  L 
Sbjct: 246 IPYFGISMGSLLPAAYTLVTQDNPLKALGVIGVFLFVQTLEGNFITPYIVGSKVSINPLA 305

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               L+      GL GL +   + A+I VI+ 
Sbjct: 306 AIVVLILWENVWGLPGLILALPMTAIIKVIFD 337


>gi|218515641|ref|ZP_03512481.1| hypothetical protein Retl8_19092 [Rhizobium etli 8C-3]
          Length = 132

 Score = 73.3 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 1/102 (0%)

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           L  I  ++ ++  G  +    V ++         A    +  AI + I+D  L+P L+  
Sbjct: 4   LTFIVFVLCLMQLGPALVLLPVILWAWFSWPTPIALVFTVV-AIPIMIIDNILKPILMAR 62

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            +  P      G++GG  + GLLGLF+GPV++++   + +  
Sbjct: 63  GLSTPMPVILIGVIGGTLSQGLLGLFLGPVVLSVFYELLRAW 104


>gi|123239764|emb|CAM24770.1| likely ortholog of H. sapiens chromosome 9 open reading frame 5
           (C9orf5) [Mus musculus]
          Length = 471

 Score = 73.3 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 9/190 (4%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDG---FSISQQLDSLGEHLFPAYWKKIS-RIVPKVIR 212
           G   L++ LS+I  +  LF+        +   + + SL     P     I  + V + IR
Sbjct: 241 GTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIR 300

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI 271
             F     +A   GL     + + G+        + AI+  +P  G   +     + L +
Sbjct: 301 GVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWL 360

Query: 272 KGNIF-NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +   A  L ++  +  + VD  +   + GG        T   + GG   +GL G  I
Sbjct: 361 TQGLGCKAILLLVFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAII 417

Query: 331 GPVLMALIAV 340
           GP+L+ ++ V
Sbjct: 418 GPILLCILVV 427


>gi|82703757|ref|YP_413323.1| hypothetical protein Nmul_A2644 [Nitrosospira multiformis ATCC
           25196]
 gi|82411822|gb|ABB75931.1| Protein of unknown function UPF0118 [Nitrosospira multiformis ATCC
           25196]
          Length = 393

 Score = 73.3 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 43/318 (13%), Positives = 104/318 (32%), Gaps = 16/318 (5%)

Query: 11  IMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           +  W++ FI ++ +LY  + F  P+L  +++ +T  P+   F   +         +  + 
Sbjct: 41  MALWILAFIAVIAALYLGRAFLVPLLFGILVSYTLSPVVDWFERYRIPR-----ALGAIC 95

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW------ASELW 123
           V+ + +    ++      +   +  ++    +        L D            A EL 
Sbjct: 96  VLGVLVGGTSWMALSLSADAAIMAEQLPETARKLRQSLNILRDGNWSTLRHFQEAADELG 155

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              +         +    ++    ++         + + +      +++  +F    G  
Sbjct: 156 RVAVDAGLESADRAVIIKESENNAWLRDLMLTQSALLVTFTAQAPVVLLLTYFLLAAGSH 215

Query: 184 ISQQLDSLGEHLFPAYWK--KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             ++L               +I   V   I+   L M I      ++   A+ + G+   
Sbjct: 216 FRRKLVRFVGPRLSQKKDAVRILEEVDSQIQRYLLVMLISNALIAVMTWLAFEMLGLKHP 275

Query: 242 VALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
              GV   ++  IP  G   ++       +L  G++  A  L     +   +V   L  +
Sbjct: 276 AVWGVAAGVLHFIPYLGTVGVALACGVAGMLQFGSLSQAFLLVAVFLLISGVVGMMLTTW 335

Query: 300 LVGGPIKLPFLPTFFGLV 317
           L G   ++     F  L+
Sbjct: 336 LQGRFARVNPAVLFIALL 353


>gi|332188216|ref|ZP_08389944.1| hypothetical protein SUS17_3356 [Sphingomonas sp. S17]
 gi|332011715|gb|EGI53792.1| hypothetical protein SUS17_3356 [Sphingomonas sp. S17]
          Length = 356

 Score = 72.9 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 46/314 (14%), Positives = 91/314 (28%), Gaps = 20/314 (6%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
              + + L+                     +  +I  ++V    +            ++ 
Sbjct: 48  LLVIFAGLVFATLLDGGVRLLGRVLPIGRGWRLLIVVLAVTVFLLGTFYLTGVEVTQQVT 107

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           +L S +         V  WL++                     K      L    +  I 
Sbjct: 108 QLRSTL---ETQASRVADWLAE----------------QGLMPKTSDINGLLKQSMGSIG 148

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
           R  S  G   +    S+  ++I   F   D    ++ L  +        +      V   
Sbjct: 149 RLTSWVGT-AVGAVTSLFMILIIGLFLAMDPDGYARGLQWMVPRSARDEFAVTQERVMTT 207

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           +R    G  +    EG++ G A  + GVP  + LG+I  I+A IP    I    + + + 
Sbjct: 208 LRKLLAGRLLGMAFEGVLTGIALMIGGVPMALLLGIIAGILAFIPNIGAIITGVLMVAVG 267

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
                           +        + P +    + LP   T    +      G++GL +
Sbjct: 268 FSAGTDAGFWAIGTYLVVQTFDGYVVVPMVAKRTVDLPPALTLSTQIMASALFGIMGLAL 327

Query: 331 GPVLMALIAVIWKE 344
              + A+I    + 
Sbjct: 328 ADPMTAMIKSALQR 341


>gi|169349711|ref|ZP_02866649.1| hypothetical protein CLOSPI_00449 [Clostridium spiroforme DSM 1552]
 gi|169293786|gb|EDS75919.1| hypothetical protein CLOSPI_00449 [Clostridium spiroforme DSM 1552]
          Length = 374

 Score = 72.9 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 70/376 (18%), Positives = 133/376 (35%), Gaps = 24/376 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGF-------------FAPVLSALIIGFTSWPI 47
           M E  LN + I+  +I+ II    + L  +               P +   II F    +
Sbjct: 1   MNENKLNYRKILEIVILGII--CYWGLNHYEMIFKSISKLISVIMPFILGFIIAFILNVL 58

Query: 48  YSSFIS---KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
                    K   ++ F  +    S++   ++ L  L     L + E+ + + L      
Sbjct: 59  MIRVEKVLNKFFTTNKFQIIKRIASIILSILILLGVLLLVVKLVIPEISNAIKLITTSLP 118

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASR--FGMIFLD 162
            V   L     G     L  K       ++ L+  F +   I F     S      +F++
Sbjct: 119 EVFETLEKWSKGDSGISLQLKSFFDTVDVQSLTSEFSEFAKIGFTGVLGSTVDILSMFVN 178

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF----LGM 218
              +II   +   +      ++ +Q   L     P         +  + R+TF    +G 
Sbjct: 179 GIFNIIVGFVFAIYILMSKETLKRQTRKLLSACLPPRITNKIIEIATISRTTFTNFIIGQ 238

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA 278
           TI AI  G +      + G P    +G +  I A IP         +  ++++  +   A
Sbjct: 239 TIEAIILGSLCALGMKIFGFPYAPMVGTLVGITAFIPIIGAFIGGGIGTFMIMTVDPMQA 298

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
               ++  I   I    + P +VG  + LP +   F +  G    G++G+      +++I
Sbjct: 299 LLFIIYLVILQQIEGDLIYPRVVGSSVGLPSIWVLFAVTVGGGLWGIVGVLFSVPTLSVI 358

Query: 339 AVIWKESIMAIKENKE 354
            ++ KE I    ++ E
Sbjct: 359 YLLLKEYINNRSKSLE 374


>gi|19703688|ref|NP_603250.1| permease [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|19713810|gb|AAL94549.1| Permease [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 331

 Score = 72.9 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 47/331 (14%), Positives = 120/331 (36%), Gaps = 8/331 (2%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           K +F  ++ ++ I     PI      K + +      ++ V ++ +FI+  L +    + 
Sbjct: 5   KDYFMTIIMSIFIAILLEPIVKYLKKKSKINDILAISLSIVFIIVIFIILSLIVIPEIIS 64

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            +K L       ++  I       +I   +    ++T ++    +      +   TN   
Sbjct: 65  SIKTLNDIYPTISEKVIITG---KNIANYLAKKNIYTINMDEIDNYFTNFVSNNTTNITK 121

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP----AYWKKI 203
            I           + +  ++    +  F    D   + + L+++ + +F      Y  K 
Sbjct: 122 LISSILGSLIDWTIGFT-NLFLAFVLAFLILLDKKHLIKTLENMIKIIFGVKNTPYIMKK 180

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
             +   +      G  I++   GL +     + G P      ++  I  MIP    I   
Sbjct: 181 LSLSKDIFLGYVSGKIIVSTIVGLCVYIVLLITGTPYAALSAILLGIGNMIPYVGSIIGG 240

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
            ++ +L++         L +   I   +    + P ++G  + L        ++      
Sbjct: 241 IIAFFLILLVAPIKTIILLVAITISQLVDGFIVGPKIIGNKVGLNTFWIIVSMIIFGNLF 300

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G++G+F+G  +M+++ + + + +   ++  E
Sbjct: 301 GIVGMFLGAPIMSILKLFYVDLLKKAEQGGE 331


>gi|227537967|ref|ZP_03968016.1| permease [Sphingobacterium spiritivorum ATCC 33300]
 gi|227242043|gb|EEI92058.1| permease [Sphingobacterium spiritivorum ATCC 33300]
          Length = 353

 Score = 72.9 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 58/351 (16%), Positives = 123/351 (35%), Gaps = 23/351 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           M++ +  P  I    I+  I++  Y  +       P++  ++      P+ +    K   
Sbjct: 1   MQKFISLPFYIKLACILISIVILGYLARIGDTIIVPLILGILFAMLLTPLSTLLEKKLRF 60

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
             T   ++     + LF   L    Y    ++  L              P +   I  G+
Sbjct: 61  PRTLAGIV----CIVLFFGGLATGLYLLASQLSMLQEDW----------PAFKHQILDGV 106

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY---CLSIIFMIIAL 174
              + W  H    Q  + ++   L       +       G   +      + ++F  +  
Sbjct: 107 EVVQDWVNHQFGIQYNEQMN--LLNKTASKSVDSGTLILGTALMSLSSIAIFLVFTFLYT 164

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           FF       I + L  L          +I   V  V++   +G+ +  +    ++  A  
Sbjct: 165 FFILIYRGHIVRFLLYLNAKEDHPVVLEIVAEVQYVVKRYLIGLLLQMLIVTTLVYIALA 224

Query: 235 LAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
           + GV   + L +IT +  ++P  G   S   V++         +   +F+  +I   I  
Sbjct: 225 IIGVKYSLLLAIITGVFNVLPYIGIFSSMFIVALITFATSTFSHVLFVFVAMSIIHMIDS 284

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             + P +VG  +K+  L     +V G    G+ G+F+   L+A++ ++   
Sbjct: 285 NVIVPKVVGSKVKINSLFAMMAIVCGELIWGISGMFLAIPLLAIVKIVMDR 335


>gi|167755695|ref|ZP_02427822.1| hypothetical protein CLORAM_01210 [Clostridium ramosum DSM 1402]
 gi|167704634|gb|EDS19213.1| hypothetical protein CLORAM_01210 [Clostridium ramosum DSM 1402]
          Length = 339

 Score = 72.9 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 62/331 (18%), Positives = 130/331 (39%), Gaps = 18/331 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            MI+ +I+++ Y L  +  P+  + +I     P+ +  I   +  + FL+    V    L
Sbjct: 12  LMIIIMIVIATYVLINWLIPLFFSCLIVLVLQPLLAKEIKLLKIENIFLSKCLIVFNYLL 71

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           FI  ++ +  + ++++  ++  +          P +L ++      +        +   +
Sbjct: 72  FIGVIIAMIIFAVIQIYTVLELL----------PNYLENLYQLFSQNHYIIDATKYLDVI 121

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
              S + +++    FI    +   M        +IF++I   F   D   I + +    E
Sbjct: 122 YSGSMSIVESISTGFITGLIAFI-MKIPSILFDLIFVVITSLFILLDYSRIERLVVKRYE 180

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            +       I   + +V+ + F    II I     L   + + G+   + L  I AI   
Sbjct: 181 MVA-----LIIDTIKEVLSNLFKAYFIIMIITFGELWLGFKIIGINHSIMLACIIAIFDF 235

Query: 254 IPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +P  G  +      I   +   I+ A  L +   I +      L P L+   + +  + +
Sbjct: 236 MPVLGLDMIMIPWIIISALTNKIYLAGALLVIYMIIVITK-NILEPKLIAKNLGVTPVLS 294

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             G+  G++ MG++GL I P L+ +I  I K
Sbjct: 295 LVGMYLGMKVMGVIGLIIVPTLLMVIIQILK 325


>gi|119944689|ref|YP_942369.1| permease [Psychromonas ingrahamii 37]
 gi|119863293|gb|ABM02770.1| permease [Psychromonas ingrahamii 37]
          Length = 361

 Score = 72.9 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 103/328 (31%), Gaps = 14/328 (4%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
               YFL G   P+  AL++ +   WPI   ++ + + + T   +I     + L     L
Sbjct: 29  FAVFYFLGGILTPLFVALVLAYLLDWPIN--YLMRLKFNRTLSTLIVMAVFLSLAFFAFL 86

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            +      +    +  + +       V  ++  +P                ++L+     
Sbjct: 87  GILPTVFRQGVAFIRDLPVMFN---QVQEYILTLPILYPDLIDPATFTLLVENLRTYI-- 141

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
               +   F+   +    +      +  I + + + F  +D   +               
Sbjct: 142 ---LDTGGFLLSHSLASLLDVAALLVYCILVPLMMLFMLKDKNKLITSFVQFLPR-DRKL 197

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGA 258
             ++   +   I +   G  I  +  G+     ++   +     L V+  +  +IP  GA
Sbjct: 198 ADQVWVEMNGQIMNYIRGKIIEILIVGIGTYFTFFFMELRYSALLAVLVGLSVLIPYIGA 257

Query: 259 PISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            +    ++I    + G+      L +  AI   +    + P L    + L  +     ++
Sbjct: 258 AVVTVPIAIVAFFQWGSSPEFFYLMVAYAIIQALDGNVIVPVLFSEAVNLHPVVIIVSVL 317

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKES 345
                 G  G+F    L  L+  +    
Sbjct: 318 IFGGLWGFWGVFFAIPLATLVKAVLNAW 345


>gi|296155958|ref|ZP_06838797.1| protein of unknown function UPF0118 [Burkholderia sp. Ch1-1]
 gi|295893464|gb|EFG73243.1| protein of unknown function UPF0118 [Burkholderia sp. Ch1-1]
          Length = 650

 Score = 72.9 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/330 (12%), Positives = 108/330 (32%), Gaps = 20/330 (6%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES--STFLAVIATVSVMCLFI 75
            +++ +LYF +    P+  ++++ F   P+             S F+AV+  ++ +    
Sbjct: 32  VVVVCALYFGRAVLIPITLSVLLSFLLAPLVQMLRRLHMGQLPSIFIAVLFALASLLAVG 91

Query: 76  VPLLFLFYYGMLEMKE----LVSKVVLANQHGIPVPRWLSD---------IPGGMWASEL 122
             +         ++ +    +  K+    +  +     L            P        
Sbjct: 92  ALIGAQLVQLAGDLPQYQVAIEQKIETVQEKTVGRADSLMSRAAVALQRVAPSRPNPPRP 151

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             +   +  ++    E    +     + + A    +  ++   + I +++ +F   +   
Sbjct: 152 TGRAARNAPAVPQPVEVHEPSPTPLQLAQRALSPAIAPIE--TTFIVLVVTIFILLQRED 209

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              + +   G          I+    ++ R  F+    + +  G V+     + GVP  +
Sbjct: 210 LRDRLISLFGSRDLHRTTTAINDAAVRLSR-YFVAQLGVNLSAGGVIAIGLAIIGVPGAL 268

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
             GVI A++  +P         ++++L   I+     A    +   +   +  +   P L
Sbjct: 269 LFGVIAALLRFVPYIGIWIAAILAVFLAAAIQPQWTMAVYTLILFIVVDLVAGQIAEPLL 328

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            G    L  L      +      G +GL +
Sbjct: 329 YGHRSGLSPLAVVVAAIFWSWLWGPIGLVL 358


>gi|150004388|ref|YP_001299132.1| putative permease [Bacteroides vulgatus ATCC 8482]
 gi|294776785|ref|ZP_06742248.1| membrane family protein [Bacteroides vulgatus PC510]
 gi|149932812|gb|ABR39510.1| putative permease [Bacteroides vulgatus ATCC 8482]
 gi|294449261|gb|EFG17798.1| membrane family protein [Bacteroides vulgatus PC510]
          Length = 378

 Score = 72.9 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 59/365 (16%), Positives = 129/365 (35%), Gaps = 19/365 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFL----KGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M +  +     +R ++  ++++ + +L     G   P   A +I +  +P+   F +K  
Sbjct: 1   MIQKKITFDSFIRGILTAMVIIGILYLVNRLSGVLLPFFIAWLIAYLIYPMVIFFQNKLR 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
             +  ++++  + V+      +   F   +  + E   K+              + IPG 
Sbjct: 61  LRNRVISILVVLLVLLSI---ITLAFVGLVPPIIEEFGKLKELLTAYFIEGSKQAAIPG- 116

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGM---IFLDYCLSIIFMIIA 173
              +    +H+   +  + L+E+       + +P+  +       I      S I ++  
Sbjct: 117 -TVANFIKEHIDMLKIHEALNESNFANTMRNVLPQVWALLTQSVNIVFSVFTSFIILLYT 175

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
            FF   D  +I++    L           I   V   +   F G   +A   G++    +
Sbjct: 176 -FFILLDYEAIARGWIKLIPARHREMTVHIVTDVQDGMNKYFRGQAFVAFCVGILFSIGF 234

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI----KGNIFNATCL--FLWGAI 287
            +   P  +  G+   ++ M+P    I+F    +  L+     G  F       FL   I
Sbjct: 235 LIIDFPLAIGFGLFIGLLNMVPYLQLIAFIPTVLLALLKAADTGENFWWILFCAFLVFCI 294

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              I D  + P ++G    L        L      MG++G+ I     +L+   ++  I 
Sbjct: 295 VQIIQDGLIVPKVMGKITGLNPAIILLSLSVWGALMGIVGMIIALPCTSLMLSYYQRYIR 354

Query: 348 AIKEN 352
             ++ 
Sbjct: 355 IKEKE 359


>gi|149002409|ref|ZP_01827343.1| hypothetical protein CGSSp14BS69_11811 [Streptococcus pneumoniae
           SP14-BS69]
 gi|147759346|gb|EDK66338.1| hypothetical protein CGSSp14BS69_11811 [Streptococcus pneumoniae
           SP14-BS69]
          Length = 347

 Score = 72.9 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 97/288 (33%), Gaps = 6/288 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L     P L    + + + PI +      + +     +I   +++   ++ +++L    
Sbjct: 37  VLNTIMIPFLLGGFLYYLTNPIVTFLNKVCKLNRLLGILITLCTLVWGMVIGVVYLLPIL 96

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  L   ++ +      V   + D+        L  +      +L  +    +  N 
Sbjct: 97  INQLSSL---IISSQTIYSRVQDLIIDLSNYPALQNLDVEATIQQLNLSYVD---ILQNI 150

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           ++ +           +   L +I   + L +F  DG      L+         +   + +
Sbjct: 151 LNSVSNSVGSVLSALISTVLILIMTPVFLVYFLLDGHKFLPMLERTILKRDRLHIAGLLK 210

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   I     G++I AI  G +    Y + G+   +   + + +  +IP   P      
Sbjct: 211 NLNATIARYISGVSIDAIIIGCLAYIGYSIIGLKYALVFAIFSGVANLIPYVGPSIGLIP 270

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
            I   I  +        ++  +   +    L P +VG  +K+  +  F
Sbjct: 271 MIIANIFTDPHRLLIAVIYMLVVQQVDGNILYPRIVGSVMKVHPITIF 318


>gi|110801094|ref|YP_695168.1| hypothetical protein CPF_0716 [Clostridium perfringens ATCC 13124]
 gi|110675741|gb|ABG84728.1| putative membrane protein [Clostridium perfringens ATCC 13124]
          Length = 366

 Score = 72.9 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/323 (13%), Positives = 99/323 (30%), Gaps = 6/323 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA------VIATVSVMCLFIVPLL 79
            +K     +  A ++               E S           +  TV+++ L      
Sbjct: 16  LVKPLILGIAIAFVLNIPMKFFERKLFRNLENSKKSWVRSAKRPLAITVTIIVLVGAISA 75

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            + +        +V        +       +++              + +     + + T
Sbjct: 76  IILFVVPQLTSSVVKLTESIPTYLKSFEVNMNNYADSTVLLSKVWDQVMNTWQEILKTVT 135

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            L      ++           +D+CL+ +  I  L    +    I + + +         
Sbjct: 136 HLFGGIASYLVGLTVDVTTAIIDFCLAFVLAIYMLSSKEKLICQIKKVMYAYLRGDIADK 195

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             +I +   +V     +G    A+  G +      +  +P    + V+    ++IP    
Sbjct: 196 ILEIGQTTNRVFSGFIIGQCTEALIIGTLCFLGMLVLRMPYAFLISVLVGTTSLIPILGA 255

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
              T  S +L+   N   A    ++      +    + P +VGG + L  L     ++ G
Sbjct: 256 FIGTIPSFFLIFIINPIKAFWFIVFIFCLQRVEGDLIYPRVVGGSVGLSSLWVMLAIMIG 315

Query: 320 VRTMGLLGLFIGPVLMALIAVIW 342
               G +G+ +G    A+I  ++
Sbjct: 316 GSAFGFIGMLVGVPTAAVIYCVF 338


>gi|292492672|ref|YP_003528111.1| hypothetical protein Nhal_2648 [Nitrosococcus halophilus Nc4]
 gi|291581267|gb|ADE15724.1| protein of unknown function UPF0118 [Nitrosococcus halophilus Nc4]
          Length = 370

 Score = 72.9 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 51/341 (14%), Positives = 111/341 (32%), Gaps = 12/341 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           +PQ     +++ +  V++  +    APVL++L+I +    I       +           
Sbjct: 14  DPQVAGLAILLVVGFVTVVLMGRMLAPVLASLVIAYLLEGIVGYMERWRCPR-------- 65

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            ++V  +F+  +  LF      +  L  ++    Q    +     ++   +         
Sbjct: 66  WLAVTLVFVTFMAALFSVIFGLLPLLSQQLTQFFQQLPTMIARGQELLLSLPEHYPNLFS 125

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                 L     + L   G   +    +   M  +   + ++ M + +FFF +D   +  
Sbjct: 126 EEQVYDLMSAIRSELAQLGQKVLSLSLASV-MGIMTLGVYLVIMPLLVFFFLKDKVRLIG 184

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
                          ++   V   I +   G  +  +   +V    + L G+   + L V
Sbjct: 185 WFKQYLPR-ERKLAAQVWHDVDFQIGNYVRGKFLEILIVWMVSFITFSLMGLQFSMLLSV 243

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           +  +  +IP  GA  +   ++     + G       L    AI   +    L P L    
Sbjct: 244 LVGLSVIIPYIGAVTATMPIAFVAYFQWGFSAEFAYLLGAYAIIQALDGNVLVPLLFAEV 303

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           + L  +     ++      G  G+F    L  L+  + K  
Sbjct: 304 VDLHPVAIIVAILVFGGFWGFWGIFFAIPLATLVQAVLKAW 344


>gi|317056391|ref|YP_004104858.1| hypothetical protein Rumal_1726 [Ruminococcus albus 7]
 gi|315448660|gb|ADU22224.1| protein of unknown function UPF0118 [Ruminococcus albus 7]
          Length = 431

 Score = 72.9 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 100/312 (32%), Gaps = 21/312 (6%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSS---FISKKEES-------STFLAVIATVS 69
           IL S+Y       PV   L+I F + P+       + +  +S       S  +  ++ + 
Sbjct: 36  ILESIYNFFNVLQPVTWGLVIAFLTNPVMERTSKLLQRFNKSEEKKPGFSKLIKAVSVII 95

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVL-ANQHGIPVPRWLSDIP-----GGMWASELW 123
              LF+  +  +    + E+ + V  +   A      V +W++ I          A++  
Sbjct: 96  TELLFLGIVTGIVAIVVPELIKSVMDIFDNAGSIVESVQKWINKIFRNYPSLEKSATKWL 155

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
           +   +   ++    +  L+      I   A     +  ++ L  I  +  L    +    
Sbjct: 156 SDFNTDVGTIYDKLKPMLEN-----ILSGAWGIVTVVKNFLLGFIVSVYMLCNKEKLLAQ 210

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           I + + S+                  V      G  I +I  GL+      +  +P    
Sbjct: 211 IKKIIISMTRKRTCEKLMSAFEQANTVFSGFITGKIIDSIIIGLICFIGLTIMSMPYATM 270

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           + V+  +  +IP   P+     +  L++           ++  +        L P ++G 
Sbjct: 271 ISVVIGVTNIIPFFGPLFGAVPTGLLILLIAPKKCIIFIIFVVVLQQFDGNILGPKILGD 330

Query: 304 PIKLPFLPTFFG 315
              LP       
Sbjct: 331 STGLPGFWVLIS 342


>gi|91778865|ref|YP_554073.1| membrane transporter [Burkholderia xenovorans LB400]
 gi|91691525|gb|ABE34723.1| Putative membrane transport protein [Burkholderia xenovorans LB400]
          Length = 650

 Score = 72.9 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 44/336 (13%), Positives = 100/336 (29%), Gaps = 32/336 (9%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            +++  LYF +    P+  ++++ F   P+                     S+    +  
Sbjct: 32  VVVVCGLYFGRAVLIPITLSVLLSFLLAPLVQMLRRLHMGQ--------LPSIFIAVLFA 83

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           L  L   G L   +LV       Q+ + + + +  +              +     ++  
Sbjct: 84  LASLLAIGALIGAQLVQLAGDLPQYQVAIEQKIETVQEKTVGRADSLMSRAAVALQRVAP 143

Query: 138 ETFLKTNGIDFIPRFA----------------SRFGMIFLDYCL-----SIIFMIIALFF 176
                        R A                 +     L   +     + I +++ +F 
Sbjct: 144 SRPNPPRATGRAARNAPAVPQPVEVHEPSPTPLQLAQRALSPAIAPIETTFIVLVVTIFI 203

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
             +      + +   G          I+    ++ R  F+    + +  G V+     + 
Sbjct: 204 LLQREDLRDRLISLFGSRDLHRTTTAINDAAVRLSR-YFVAQLGVNLSAGGVIAIGLAII 262

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDK 294
           GVP  +  GVI A++  +P         ++++L   I+     A    +   +   +  +
Sbjct: 263 GVPGALLFGVIAALLRFVPYIGIWIAAILAVFLAAAIQPQWTMAVYTLILFIVVDLVAGQ 322

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              P L G    L  L      +      G +GL +
Sbjct: 323 IAEPLLYGHRSGLSPLAVVVAAIFWSWLWGPIGLVL 358


>gi|331700977|ref|YP_004397936.1| hypothetical protein Lbuc_0607 [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128320|gb|AEB72873.1| protein of unknown function UPF0118 [Lactobacillus buchneri NRRL
           B-30929]
          Length = 349

 Score = 72.9 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 59/341 (17%), Positives = 115/341 (33%), Gaps = 22/341 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N   + R+ ++ +++  LY  +   + VL   I       +     +         A I
Sbjct: 8   VNNVPLRRFTVLMLVIFVLYVTRSMISTVLLTFIFCL----LVVKLTNAIRRHIKIPAGI 63

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
               V  L I+ L F     + ++ +   +           P+ L D     W +EL  +
Sbjct: 64  IVTVVYLLVILGLYFAVTKYIPKIADQTIRTTQDIILFYTDPKNLPDDTTMSWLNELIKQ 123

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                Q            NG+  + ++ +  G       +++   +I  FFF  +  +++
Sbjct: 124 SNIMAQM----------KNGVSLVWKYVTGVGT----MGITLFLSMILSFFFAIEQRTMT 169

Query: 186 QQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           +      E  F  +++      +               IAI   ++         +P   
Sbjct: 170 RFSKLFLESDFGWFFQDLYFFGKKFVATFGVVIEAQFFIAICNTVLTTIVMAFMHLPQLA 229

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           AL ++  I+++IP  G  ISF  +S+     G   +   L +   +        L P  +
Sbjct: 230 ALALMVFILSLIPVAGVIISFVPLSLVGYSVGGWNDVFYLLITIIVVHAFEAYILNPNFM 289

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                LP   TF  L+ G    G+ GL  G  +      I 
Sbjct: 290 ASKTNLPIFYTFVVLLIGEHFFGIWGLICGVPIFTFFLDIL 330


>gi|300703166|ref|YP_003744768.1| permease [Ralstonia solanacearum CFBP2957]
 gi|299070829|emb|CBJ42126.1| putative permease transmembrane transport protein (perM) [Ralstonia
           solanacearum CFBP2957]
          Length = 356

 Score = 72.9 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 52/345 (15%), Positives = 116/345 (33%), Gaps = 12/345 (3%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T    + +    +  I L  L  L     P + A I+ +   P        +        
Sbjct: 7   TQDTKRTLAWIAVAVIFLALLKLLAPTLTPFVFAFILSYILHPGVEWLQRHRVPR----- 61

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
               + V  + ++  +      +L +  L  ++    +    +   L+       A    
Sbjct: 62  ---VLGVFLMILLLAVLAVALMLLILAVLQREIPAIREQLPGMLSKLNAAITPRLAEMGL 118

Query: 124 TKHLSHPQSLKILSETFLKT--NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 P   K+L+E    +  + +     +    G   +     +  + I +F+   D 
Sbjct: 119 HVRFDFPGLRKLLTEQLAASPEDVMSTALNYLRVSGSAAVQLLGIVFLVPIVMFYLLMDW 178

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + ++L+      +    ++++     ++     G  I+ +   +   S   LAG    
Sbjct: 179 NMLMRRLEGTVPRRWIGKARELAAETDGLLSQYLRGQIIVMLVLAVYYSSGLALAGFDVA 238

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + +G+ T +   IP         ++I   LL  GN++    + +   I   +    L P 
Sbjct: 239 LPIGIFTGLAVFIPYIGFGIGLTLAILSALLQFGNLYGLLAVAVVYGIGQVLEGFYLTPR 298

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           LVG  I L  L     L+   +  G  G+ +   + A++ V  ++
Sbjct: 299 LVGERIGLHPLAVILALLAFGQLFGFFGILLALPISAVLLVGLRQ 343


>gi|110802939|ref|YP_698033.1| permease [Clostridium perfringens SM101]
 gi|110683440|gb|ABG86810.1| putative membrane protein [Clostridium perfringens SM101]
          Length = 391

 Score = 72.9 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 100/283 (35%), Gaps = 9/283 (3%)

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
           T + +I T+S + LF+VP L      + E      K    N +       L         
Sbjct: 90  TIIVLIGTISAIILFVVPQLTSSVVKLTESIPTYLKSFEVNMNNYADSTLL--------L 141

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           S++W + ++  Q +     T L      ++           +D+ L+ +  I  L    +
Sbjct: 142 SKVWDQVMNAWQEILKTV-THLFGGLASYLVGLTVDVTTAIIDFFLAFVLAIYMLSSKEK 200

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
               I + + +           +I +   +V     +G    A+  G +      +  +P
Sbjct: 201 LICQIKKVMYAYLRGDIADKILEIGQTTNRVFSGFIIGQCTEALIIGTLCFLGMLVLRMP 260

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               + V+    ++IP       T  S +L+   N   A    ++      +    + P 
Sbjct: 261 YAFLISVLVGTTSLIPILGAFIGTIPSFFLIFIINPIKAFWFIVFIFCLQRVEGDLIYPR 320

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +VGG + L  L     ++ G    G +G+ +G    A+I  ++
Sbjct: 321 VVGGSVGLSSLWVMLAIMIGGSAFGFIGMLVGVPTAAVIYCVF 363


>gi|262066651|ref|ZP_06026263.1| permease [Fusobacterium periodonticum ATCC 33693]
 gi|291379610|gb|EFE87128.1| permease [Fusobacterium periodonticum ATCC 33693]
          Length = 364

 Score = 72.9 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 51/331 (15%), Positives = 128/331 (38%), Gaps = 8/331 (2%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
           G+F  ++ A+ I     PI      K + +      ++   V+ + I+  L +    +  
Sbjct: 38  GYFMTLIMAIFIAILLEPIEKYLKKKSKINDILAISLSIAFVVLIVIIMSLIVIPEIISS 97

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           +K L       ++  + + + +++         + T+ L+   +  I + T   +N  +F
Sbjct: 98  LKVLNDMYPAISEKVLTIGKDVTNYLAEKNIYTVSTEELNDSFTNFISNNT---SNIKEF 154

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP----AYWKKIS 204
           +  F        L +  ++I      F    D  ++ + L++L + +F      Y     
Sbjct: 155 VFAFVGGLVNWTLGFT-NLIIAFTLAFLILLDKKNLIKTLENLIKIIFGVKNTPYIMNKL 213

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
           R+   +  S   G  I++   GL +     + G P      ++  +  MIP    I    
Sbjct: 214 RLSKDIFISYISGKIIVSSIVGLCVYIILLITGTPYAALSAILLGVGNMIPYVGSIFGGI 273

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           V+ +L++         L +   I   +    + P ++G  + L        ++      G
Sbjct: 274 VAFFLILLVAPIKTLILLIAIIISQLVDGFVVGPKIIGNKVGLSTFWVMVSMIIFGNLFG 333

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           ++G+F+G  ++++I + + + +   ++  ++
Sbjct: 334 IVGMFLGTPILSIIKLFYVDLLKRAEQGGKE 364


>gi|294140667|ref|YP_003556645.1| permease PerM [Shewanella violacea DSS12]
 gi|293327136|dbj|BAJ01867.1| permease PerM, putative [Shewanella violacea DSS12]
          Length = 360

 Score = 72.9 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 51/304 (16%), Positives = 106/304 (34%), Gaps = 14/304 (4%)

Query: 45  WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG- 103
           WP+    +S+   + T  A +     + + +V +  L      +   LV+ +      G 
Sbjct: 54  WPVAQ--MSRLGINRTTAASLVLFMFVGVMLVLIFGLVPSIWKQGVALVTDLPTMLDKGL 111

Query: 104 IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY 163
           I    +++  P  +   +L         S+ I  +  L T  +  I +    +    L  
Sbjct: 112 ITAQGYINQYPQFINPDQL--------DSMVIELKKMLDTQHLLDIGKQILGYSASLLVL 163

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
            +  I + + +FFF +D   +                 K+   + + I +   G  I  I
Sbjct: 164 MVYAILVPLLVFFFLKDKDELLSGSKRFIPT-NRDLAHKVWIEMNQQIFNYIRGKVIEII 222

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLF 282
             G+V    + L  +     LGV+T    +IP  GA +    +++    +  I       
Sbjct: 223 IIGVVSYIFFALMDLRYAALLGVLTGFSVLIPYVGATLVTLPIALVAFFQWGISPEFGYL 282

Query: 283 LWGAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           + G   +  +D   L P +    + L  +     ++      G+ G+F    L +L+  +
Sbjct: 283 MLGYAIIQALDGNVLVPIVFSDAVDLHPVFIIAAVLIFGGLWGVWGVFFAIPLASLVKAV 342

Query: 342 WKES 345
               
Sbjct: 343 LNAW 346


>gi|157961490|ref|YP_001501524.1| hypothetical protein Spea_1665 [Shewanella pealeana ATCC 700345]
 gi|157846490|gb|ABV86989.1| protein of unknown function UPF0118 [Shewanella pealeana ATCC
           700345]
          Length = 382

 Score = 72.9 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 114/335 (34%), Gaps = 23/335 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G      + +IL  +        P + ++ I     P+ S     +         +A +
Sbjct: 12  KGFAISAFIVVILAGIKAASPIVVPFVLSVFIAVICNPMISWMTRHRAPR-----GLAVL 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M   ++  L+L       + E   ++ L     I    W+ +                
Sbjct: 67  LLMVFIVLMGLWLASVVGTSINEFSKQLPLYRDQLIEQFSWVVE--------------KL 112

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +++I  E  L            +           ++  +I+ + F   +    S ++
Sbjct: 113 AAFNIQISKEQILAYFDPGVALSMTTNMLSGVGSVMANLFLIILTVVFILFESNGFSTKM 172

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L         K++ R +  V +   +   ++++  GL++G   +  GV   +  GVI 
Sbjct: 173 -HLALDDPDMRLKQVDRFLNSVNQYMVIKT-LVSLATGLIIGVGLYFIGVDYALLWGVIA 230

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP  G+ I+     +   I+     A  + L       ++   + P  +G  + L
Sbjct: 231 FLFNYIPNIGSIIAAIPSVLLAFIQLGPGAAGGVALLYLGTNMVMGNAVEPRYMGKGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
             L  F  L+     +G +G+ +  P+ M +   +
Sbjct: 291 STLVVFLSLIFWGWLLGSVGMLLSVPLTMIVKIAL 325


>gi|238060754|ref|ZP_04605463.1| hypothetical protein MCAG_01720 [Micromonospora sp. ATCC 39149]
 gi|237882565|gb|EEP71393.1| hypothetical protein MCAG_01720 [Micromonospora sp. ATCC 39149]
          Length = 412

 Score = 72.9 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 46/345 (13%), Positives = 125/345 (36%), Gaps = 18/345 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G +  ++ + + + +    G    V+ AL +     P      S     +       T++
Sbjct: 85  GALGVLLAYAVFLGVRNSAGILVLVVIALFLAVGLNPAVVRLRSW-GLPNGLAVTAVTLT 143

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ L +  L+ L    + +  + V ++          P ++ ++      ++   ++   
Sbjct: 144 VLLLIVGGLVALVPPVVTQSGQFVEQL----------PSYVEELRRNKAVNDFVVRYDVM 193

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            +         +       +      FG +F    + ++ +    +F       + +   
Sbjct: 194 DKVKAAADADTIGRALGGVLGGAQLIFGTVFRALTVLVLTIYFLAYF-----DRLRRVGY 248

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +L         + I   +   + +  +G   IA+  G+       + G+P   AL V+ A
Sbjct: 249 ALVPRSRRRRVRLIGDEILAKVGAYMVGALGIAVLAGVTTFVFALVVGLPYPFALAVVVA 308

Query: 250 IMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +  +IP  GA +    VS+      ++        +  +   + +  + P ++   +++ 
Sbjct: 309 VADLIPQIGATLGAVVVSLVGFAT-DLPVGIACVAFFVVYQQVENYLIYPKVMRRSVEVN 367

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            +      + GV  MG++G  I    +A + +I +E ++  ++ +
Sbjct: 368 EVAALLAALLGVSLMGVVGALIAIPTVAALQLILREVVLPRQDRR 412


>gi|16800017|ref|NP_470285.1| hypothetical protein lin0948 [Listeria innocua Clip11262]
 gi|16413407|emb|CAC96179.1| lin0948 [Listeria innocua Clip11262]
 gi|313619684|gb|EFR91311.1| membrane protein YdbI [Listeria innocua FSL S4-378]
 gi|313624382|gb|EFR94403.1| membrane protein YdbI [Listeria innocua FSL J1-023]
          Length = 348

 Score = 72.9 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 54/345 (15%), Positives = 114/345 (33%), Gaps = 25/345 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  ++ + LY L+     +L   I  F    + +  + +       +
Sbjct: 5   EKLKENDTARRVLVFVLLGIVLYLLRSMIDLILLTFIFAFLVTRLENVILKRIRIPRKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V     V ++      + ++ +LV  +V    +  P    +     G      
Sbjct: 65  VIVLYCLVAMFLYVAIVHFLPILIDQISQLVDSLVKIYNN--PSDNKIVQWIVGFLKESN 122

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             K+L                 G+DFI    S  G + L + L++I  +    FF  +  
Sbjct: 123 IQKYLQ---------------TGVDFIIASLSGIGSVGLSFFLALILSL----FFSLEKE 163

Query: 183 SISQQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            ++              +K+     +              +IA+   ++   A +L   P
Sbjct: 164 RVTSFTGQFLTSKVGFIFKEAAFFGKKFVATFGVVLEAQLMIALVNTIITTIALYLMNFP 223

Query: 240 SHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             ++L ++  ++ +IP    I     + +     G   +   + +   I   I    L P
Sbjct: 224 QLLSLSIMVFVLGLIPVAGVIISCVPLVLIAYSVGGFQDVVYILITVVIVHAIETYILNP 283

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L+     LP   TF  L+      G+ GL +G  +   +  I  
Sbjct: 284 KLMSSKTNLPVFYTFIILIFSETFFGVWGLIVGIPVFVFLLDILD 328


>gi|319638220|ref|ZP_07992983.1| GNAT family Acetyltransferase [Neisseria mucosa C102]
 gi|317400493|gb|EFV81151.1| GNAT family Acetyltransferase [Neisseria mucosa C102]
          Length = 356

 Score = 72.9 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 59/337 (17%), Positives = 125/337 (37%), Gaps = 10/337 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I+   ++   +  LY L     P + A ++ +   P+       +       ++I     
Sbjct: 13  IIMACVIAAFIWLLYALGDVLTPFIVAAVLAYVLNPLVEWL-QLRRIRRAPASMIIMAFA 71

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           + + +  +L +    + +   L  ++  +       +  WL+ + G     +        
Sbjct: 72  LLVLLSLVLIIVPMLLNQFNNLAERLPQIVGFVQNKLLPWLNSVSG-----DYIQIDQES 126

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             +        L      +IP    + G   +    +++ + + L++F  D    S  + 
Sbjct: 127 IIAWLQSHTDELSNTLKAWIPTLMRQSG-NVISGVSNLVLLPLLLYYFLLDWKRWSSGIS 185

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L    F   + +IS  + +V+     G  ++ +  GLV G    L G+ S  A+G+I  
Sbjct: 186 KLVPRRFIETYTRISSNMDEVLGEFLRGQLMVMMIMGLVYGLGLMLVGLDSGFAIGMIAG 245

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGGPIKL 307
           I+  IP     +   ++    +         L +W    +  F+    + P +VG  I L
Sbjct: 246 ILVFIPYLGAFTGLLLATVAALLQYGSWQGLLMVWAVFGVGQFLESFFITPKIVGDRIGL 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L   F L+   + MG +G+  G  L A+  V+ +E
Sbjct: 306 SPLWVIFSLMAFGQLMGFVGMLAGLPLAAVTLVLLRE 342


>gi|111018222|ref|YP_701194.1| hypothetical protein RHA1_ro01211 [Rhodococcus jostii RHA1]
 gi|110817752|gb|ABG93036.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 389

 Score = 72.9 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 50/351 (14%), Positives = 115/351 (32%), Gaps = 27/351 (7%)

Query: 13  RWMIMFIILVSLYF------------LKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           RW++  I+ V L              L+ F   +  A +   T  P+      +      
Sbjct: 24  RWLLPSILYVLLAVAAYQLSGWLFVNLRSFLGLLFLAWLFSITIEPVVDWLERR--GLRR 81

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A    +  + +F +  L LF   +              Q    +P  LS +    W++
Sbjct: 82  GAATGLVLFALFVFAIGFLALFGTLLA---------QQLAQLLKALPGALSSV--TDWSN 130

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            ++    +  + L  L+   ++     F P          L     ++ +++ +F+    
Sbjct: 131 RVFDTDFATGEDLIHLTPETIRDLAERFTPGVLGVL-SSLLGVVFQMLTLLLFVFYMSAQ 189

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G ++ + + S            +  I  +      +   I+A    +  G      GVP 
Sbjct: 190 GPALRRTISSWFPARQQGVISVVWEISVEKAGGYVVSRLILAAVSSVATGIFLVAIGVPY 249

Query: 241 HVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            + L + T I++  +P        A+   +       +   + ++G +   I +  L P 
Sbjct: 250 WLPLALWTGIVSQFVPTLGTYLAIALPAIIAAASQPMDGVWVIVFGTVYQQIENYVLHPR 309

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +    + +     F  ++ G    G +G  +   ++A I  + +      +
Sbjct: 310 ITSATVSIHPAVAFGSVIVGASLFGPVGALVSVPVVAAIQALVETYGRRYE 360


>gi|15613026|ref|NP_241329.1| hypothetical protein BH0463 [Bacillus halodurans C-125]
 gi|10173076|dbj|BAB04182.1| BH0463 [Bacillus halodurans C-125]
          Length = 372

 Score = 72.9 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 54/333 (16%), Positives = 114/333 (34%), Gaps = 16/333 (4%)

Query: 11  IMRWMIMFIILV----SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS------- 59
           I R +I+ +++     +LYF      P L A ++ F   PI ++                
Sbjct: 9   IARLLIVALLIATGLYALYFFLSLTYPFLIAALLAFFMNPIVNTLEKDIRLPRPLAVLVS 68

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP---VPRWLSDIPGG 116
             L       ++ + IV ++  F Y  L +   + ++ +  Q+ +    +P W   +   
Sbjct: 69  LLLLFGLIGGLVTIMIVKMIDGFRYLSLMVPTQIERISMTIQNYVNEQILPLWNQGLGLI 128

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
                   + L             L  N    I    S            ++F+I+ L+F
Sbjct: 129 DRLEPSQQRALEEGIQQLGGQLASLLGNLGQAIANGLSHIVSALPLTLTVVVFIILGLYF 188

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
             +D         +    +       + + +   +        I+     L+      + 
Sbjct: 189 ISKDWNKFKMAARTRLPFIVRRRTLDVIKDLKTKVFGFITAQVILISLTALINFIGLLVL 248

Query: 237 GVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
            V     + +I  ++ ++P  G  I      IY ++ GN+F    L     + + ++ + 
Sbjct: 249 QVEHPFTIALIIGLVDLLPYLGTGIILIPWGIYSIVTGNLFLGVGLLALYGLTV-LIRQL 307

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
             P ++   + L  L T   L  G++  G+LGL
Sbjct: 308 AEPKVLSSSLGLNPLATLISLFAGLQLFGVLGL 340


>gi|300741320|ref|ZP_07071341.1| putative permease [Rothia dentocariosa M567]
 gi|300380505|gb|EFJ77067.1| putative permease [Rothia dentocariosa M567]
          Length = 396

 Score = 72.9 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/317 (12%), Positives = 100/317 (31%), Gaps = 8/317 (2%)

Query: 37  ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV 96
           A+ I     PI     S      +   VI  +S   +    ++++      +    V + 
Sbjct: 88  AIFIALGLDPIVRKLES-FGVKRSAGVVIVVLSFAAIISGLVVWIVPIISAQASSFVYRA 146

Query: 97  VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
               Q  I        I   +  ++    +      +    E+   ++ +          
Sbjct: 147 PAIYQDFIDS-DTFKRIDDVLHVNDWVNNN------VPKFLESLTSSSAVGGFMSNLITA 199

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
           G          I ++    +F     +I      L         ++++  +   + +  +
Sbjct: 200 GSTIAQILTGTIIVLFLSLYFLSSMRTIKAWGSRLAPASKRERVEELTERITGAVGNYVM 259

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIF 276
           G  ++A+           + G      + V   I+A IP    ++   +   +L+     
Sbjct: 260 GQGVVAVLNATFALITMIILGFSFPQLVAVFVLILAFIPLVGGVAALVLVSLILLTQGWQ 319

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            +    +   I L I    + P ++   + +P       +  G    G+LG  I   + A
Sbjct: 320 MSVTFAIAYFIYLQIEAYIISPRIMSKAVSVPGGVAIIAVAAGGALWGVLGALIAIPVAA 379

Query: 337 LIAVIWKESIMAIKENK 353
            + ++ KE  +  ++++
Sbjct: 380 SLLILVKEVFIPRQDHR 396


>gi|163801820|ref|ZP_02195717.1| uracil phosphoribosyltransferase [Vibrio sp. AND4]
 gi|159174328|gb|EDP59132.1| uracil phosphoribosyltransferase [Vibrio sp. AND4]
          Length = 356

 Score = 72.9 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 55/343 (16%), Positives = 125/343 (36%), Gaps = 20/343 (5%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +    I+    +++YFL    AP+L A+++ +   WP+      +     TF  +I
Sbjct: 15  DPHAVSLVAILLFGFITIYFLGHLIAPLLVAIVLAYLLEWPVIQMC--RLGIPRTFSVII 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + L ++ +  L      ++  L++ +         + ++++ +P           
Sbjct: 73  VILIFIGLMLIAVFGLVPTIWTQVGNLINDIP---NMYAGLQKFIATLPE----RYPELA 125

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF--- 182
           +L   ++L   ++      G   +    +   +      + +I + + +FF  +D     
Sbjct: 126 NLRIVETLVTNAKNQAIGLGESVVKGSLASL-VSLATLAVYLILVPLLVFFLLKDKEEMM 184

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           S++  +      L    W +++  +   IR   L + I+    G V    + +  +    
Sbjct: 185 SMASGILPKNRRLANKVWHEMNEQISNYIRGKVLEILIV----GSVSYVTFAILDLRYSA 240

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATC-LFLWGAIELFIVDKTLRPFL 300
            L V   +  +IP  GA      V+I  L +  +      L +   I   +    L P L
Sbjct: 241 LLAVAVGLSVLIPYIGAAAVTVPVAIVGLFQWGLAPPFYWLLVAYGIIQALDGNVLVPVL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               + L  +     ++      G  G+F    L  L+  +W 
Sbjct: 301 FSEAVNLHPVAIIVAVLVFGGMWGFWGVFFAIPLATLVKAVWN 343


>gi|116624022|ref|YP_826178.1| hypothetical protein Acid_4934 [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227184|gb|ABJ85893.1| protein of unknown function UPF0118 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 359

 Score = 72.9 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 48/302 (15%), Positives = 115/302 (38%), Gaps = 11/302 (3%)

Query: 37  ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV 96
           AL+  +   P+ +         +       TV++   +++ +             +V++ 
Sbjct: 42  ALLFAYLLSPLVNLLDRALPNRTR------TVALALAYVIFIGLAVLVVTQVGVRVVAQA 95

Query: 97  VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
             A++    +P  ++       ++      L       I SE + +T+ I      AS  
Sbjct: 96  QAASKK---LPDMMAKWEEPSPSAPENVNTLKARVVQTIRSEMYKRTSDILNALPGASLK 152

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH-LFPAYWKKISRIVPKVIRSTF 215
            +      + ++ + +  FFF +DG  I   + S+ +     A    +   +  ++    
Sbjct: 153 FLEVASDVIYVVIVPVLAFFFLKDGELIRVHMLSVVDAGPLRAMVDSLLEDIHLLLAHYM 212

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNI 275
             + ++++   +    A+ + G+P  + L V+   +  IP   P++  A  + +      
Sbjct: 213 RALVLLSLNTFVFYSVAFTIMGMPFGILLAVMGMCLEFIPMIGPLTAAAAILIVAAVSGA 272

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
                + ++      + D  + P L+G  ++L  L   FG+ GG    G+ G F+   ++
Sbjct: 273 SI-LTVLIFLVAYRMLQDYFVSPHLMGQGVELHPLLVLFGVFGGAEVAGVAGSFLSVPVL 331

Query: 336 AL 337
           AL
Sbjct: 332 AL 333


>gi|160931224|ref|ZP_02078626.1| hypothetical protein CLOLEP_00061 [Clostridium leptum DSM 753]
 gi|156869779|gb|EDO63151.1| hypothetical protein CLOLEP_00061 [Clostridium leptum DSM 753]
          Length = 445

 Score = 72.9 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 44/347 (12%), Positives = 118/347 (34%), Gaps = 24/347 (6%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEES-------------STFLAVIATVSVMCL 73
           + G  AP +  L++ F    +Y  F  K                       ++ + V   
Sbjct: 36  VSGLLAPFIYGLVLAFLVNGLYEFFRQKVFRRLGEKKNGKYIRQVRALSVTVSYLLVFLC 95

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               +  +    ++ + +L   +    +      + ++D   GM  +  + K +    + 
Sbjct: 96  VTAMVWIVIPQLVVSISQLGKNIGGYAES---AEKAVTDFIAGMGLNAGFQKQIDLFWNQ 152

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                T +       +  F   F    +++ + ++  +  L+       ++ +Q+  L  
Sbjct: 153 LGTQITNIAGQVAPKLIDFTMDFTTGVINWVIGLVVSVYMLY----SKETLIRQVKKLVV 208

Query: 194 HLFPAYWKKISRIVPKVIRSTF----LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            + P         V  V    F    LG    ++   ++      +  +P  + + V+  
Sbjct: 209 AVLPVKISDKVLEVGAVSNRIFVRYLLGRIYDSLIVLVLCFIGMSILQMPYALLISVVVG 268

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +IP   P      S  +L+  +        ++  +   +    + P +VG  + +  
Sbjct: 269 VTNIIPVFGPFLGGVPSALILLMVDPMKGLWFIIFIIVLQQVDGNIICPLIVGDSLGISG 328

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           +    G+  G    G+ G+ +G  ++A++ ++  E +    + K  +
Sbjct: 329 IWVLAGVTLGGGLGGVAGMVLGVPILAVLYLLLSEFVNKRLQKKGTV 375


>gi|116073974|ref|ZP_01471236.1| hypothetical protein RS9916_36027 [Synechococcus sp. RS9916]
 gi|116069279|gb|EAU75031.1| hypothetical protein RS9916_36027 [Synechococcus sp. RS9916]
          Length = 350

 Score = 72.9 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 47/290 (16%), Positives = 108/290 (37%), Gaps = 17/290 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  F    L++ +I F    I   +++++        ++  +  +   ++    L    +
Sbjct: 30  LAPFPGLFLTSALIAFLLD-IPRRWLTRRGLPRWLAILVVALLTVGTLVLAGFTLVPLLI 88

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK--TN 144
            ++ +L++           +P WL    G +   + W      P     LS   L   + 
Sbjct: 89  DQLVQLIN----------ALPSWLEAAEGWINRVQEWALQRGLPSDFGDLSSDLLTRISQ 138

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               + +         L   ++I+ +++   FF   G SI+  L      L  ++   + 
Sbjct: 139 VASQLSQRLLGILGATLGTTINIVIVLVLAVFFLLGGESITAGLARW---LPDSWRNLVV 195

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
             + +  R  F G  ++A+   L     + + G+P  V   V+     ++P  + ++  A
Sbjct: 196 STITRTFRGYFAGQVLLALILSLGQMVVFTVLGIPYGVLFAVLIGFTTLLPYASALTIVA 255

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           VS  L ++ +      + +   +   IVD+ ++P L+G  + L       
Sbjct: 256 VSALLAVQ-DPSTGLEILVAAILVGQIVDQVIQPHLMGNLLGLQPAWLLI 304


>gi|255994755|ref|ZP_05427890.1| membrane protein [Eubacterium saphenum ATCC 49989]
 gi|255993468|gb|EEU03557.1| membrane protein [Eubacterium saphenum ATCC 49989]
          Length = 390

 Score = 72.9 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 46/337 (13%), Positives = 117/337 (34%), Gaps = 12/337 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKK------EESSTFLAVIATVSVMCLFIVPLLFLFYY 84
             P+   +++ F  +PI     +        ++   +L ++ ++      I  +++    
Sbjct: 56  LYPLWIGILLAFILYPIVKKIENLLSPYFKSKKIPKYLGILTSLLAFIAIISLIIYGLTS 115

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            +L      +      +      ++   +     +SE      S   S+   +  +L + 
Sbjct: 116 LILGQLTFSNLSSNLGKVTEIFTKYKLALEEWGKSSEYANVISSQIVSVSTSALNWLTSI 175

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALF---FFYRDGFSISQQLDSLGEHLFPAYWK 201
               +     + G+   +  + +I  I  L    +F R    +++ +    +    +   
Sbjct: 176 FSASLFEGLKKVGISLFNVIIGMIMCIYILIDHTYFTRKIKRVARLIVRNKQR--RSTLS 233

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPI 260
            +   +  ++     G+ + A+   ++      + G+   V LG+   +M +IP  G   
Sbjct: 234 NLMNDIVNILALFVRGVLLDALIIAVLSSILLTVLGIKFSVFLGIFAGVMNIIPYFGPFA 293

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
               V I   I  +  +     +   +        + P +VG  + L  L     +  G 
Sbjct: 294 GMVPVFILTSITSSPLHGAIAVIAMIVLQQFDANLIYPKIVGEKLGLHPLIVILSVTVGW 353

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
              GLL + I   +  +I  I +  I+ ++  K++ S
Sbjct: 354 YYGGLLAMIIAAPVATIIIKILRAFIVKLENTKKQPS 390


>gi|325981599|ref|YP_004294001.1| hypothetical protein NAL212_0916 [Nitrosomonas sp. AL212]
 gi|325531118|gb|ADZ25839.1| protein of unknown function UPF0118 [Nitrosomonas sp. AL212]
          Length = 410

 Score = 72.9 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 73/195 (37%), Gaps = 8/195 (4%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR--- 205
           +P+  +          L+++F  + LF    D   +   + SL E     ++++ ++   
Sbjct: 200 LPKLINYLYKAIGTMSLALLFSFLILF----DSVRLGGLMKSLHESRLKDFYQETAQPVI 255

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTA 264
               V+        +IA     +      + G+PS   L +I  + + IP  G  IS T 
Sbjct: 256 RFAYVVGRAIQAQAMIACVNTFLTLIGLVILGIPSVALLSLIVFVCSFIPVLGVFISTTP 315

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           + +  L  G +  A  +     I   I    L P + G  +KL  +     L+    + G
Sbjct: 316 MVLVALNTGGLTLALGIVGMITIIHIIEAYGLNPMIYGKHLKLNPVLVLIILLIAYHSFG 375

Query: 325 LLGLFIGPVLMALIA 339
           L G+ +G  +     
Sbjct: 376 LWGMILGVPVAYYFI 390


>gi|189183980|ref|YP_001937765.1| permease protein PerM [Orientia tsutsugamushi str. Ikeda]
 gi|189180751|dbj|BAG40531.1| permease protein PerM [Orientia tsutsugamushi str. Ikeda]
          Length = 350

 Score = 72.9 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 61/339 (17%), Positives = 123/339 (36%), Gaps = 9/339 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +     I+ ++I  IIL   YFL     P L+A ++ +   PI      K + S      
Sbjct: 3   VKTNNYILYFLITAIILSLCYFLINIATPFLAAAVLAYILNPIVEILQIKLKLSRNL--- 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
                V  +F+V L  L    +L M  +  +  L   +       + +      ++    
Sbjct: 60  ----IVSIVFVVFLTILIVAALLLMPIIYKQAALLIANIPVYKATIQNFIESNNSTNNLE 115

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             ++H     +          I  I   A ++ +  +   ++  F  I LF+F RD   I
Sbjct: 116 NSINHNIKHILTEIINSWILIITHILNHAWQYTITTIHSVVTAAFTGILLFYFLRDWKLI 175

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
                S+       Y  KI   +   + +   G   I +   +    +  L  +   + +
Sbjct: 176 INSCKSILPQQSILYINKIVNSMNTSLLAYAQGQLNICLILSIFYSISLLLINLDFSLTI 235

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIK--GNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           G+ +  + +IP    I  T++++       G  F    + +   I   +    L P L+G
Sbjct: 236 GLFSGTIIIIPLIGTIISTSIALITCFSQFGLSFKLLYVIMIYIISHILETHFLTPKLIG 295

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             + L  +  +F ++     +G  G+F+   L  +I ++
Sbjct: 296 SKVGLHPIWIYFAVLTCSYYLGFTGIFLAIPLAIIIKIV 334


>gi|302558032|ref|ZP_07310374.1| membrane protein [Streptomyces griseoflavus Tu4000]
 gi|302475650|gb|EFL38743.1| membrane protein [Streptomyces griseoflavus Tu4000]
          Length = 399

 Score = 72.9 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 50/363 (13%), Positives = 110/363 (30%), Gaps = 22/363 (6%)

Query: 2   RETMLNPQGIMRWMIMFIIL--------VSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS 53
           R     P+ + R M++ + L         + + L G    VL A  +     P  S   +
Sbjct: 8   RPGARMPRWLPRAMVLALALYAVFQLGSWAFHQLIGLLINVLIAFFLALAVEPAVSWMAA 67

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
           +          +  + V+      +  L      ++ ++V                + + 
Sbjct: 68  R-GVRRGLGTFLVFLGVLIAAAGFVTLLGSMLAGQIIKIVEDF-------PDYLDSVINW 119

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
             G + +EL    +            +++ +    +       G +F    + +      
Sbjct: 120 INGHFHTELRRVDIQEGLLRSDWLRNYVQNSATGVLDVSTQVLGGLFQLLTIGLF----- 174

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
            F+F  DG  + + + SL      A   +   I             ++A+  GL      
Sbjct: 175 SFYFAADGPRLRRTVCSLLPPARQAEVLRAWEIAVNKTGGYLYSRGLMALVSGLAHYVLL 234

Query: 234 WLAGVPSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
               VP    L V   +++  IP        A+ + +    + + A  + ++  I     
Sbjct: 235 EFLEVPYAPVLAVWVGLVSQFIPTIGTYLAGALPMLIAFTVDPWYALWVLVFVVIYQQFE 294

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           +  L+P L    + +     F  +V G   +G +G  I     A +       +      
Sbjct: 295 NYVLQPKLTSRTVDIHPAVAFGSVVAGTALLGAVGALIAIPATATLQAFLGAYVRRYDVT 354

Query: 353 KEK 355
            + 
Sbjct: 355 DDP 357


>gi|300857402|ref|YP_003782386.1| hypothetical protein CLJU_c42830 [Clostridium ljungdahlii DSM
           13528]
 gi|300437517|gb|ADK17284.1| conserved membrane protein [Clostridium ljungdahlii DSM 13528]
          Length = 351

 Score = 72.9 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 55/335 (16%), Positives = 113/335 (33%), Gaps = 6/335 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF-LKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M E +     I  ++I++ I+  ++F    +  P + A                K   + 
Sbjct: 1   MNEFINKINRISLFIILYTIIFLVFFSTLNYTLPFVLAFAFALILKRPTIFISRKLRINH 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL--VSKVVLANQHGIPVPRWLSDIPGGM 117
              ++I T+    + I  L F       E  +L   +++ ++         +        
Sbjct: 61  ALSSLITTIIFFTVIITVLSFGITVVTQETIQLGKNTQLYISRNSDNVYNSFYKLQKYYN 120

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                    L    +  I   + +       +               + I F ++A +FF
Sbjct: 121 NLDPYIINALEKNFTSFITKLSNIAVTVSGKLVSSLINLLTTIPYILMVIFFTLLATYFF 180

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            RD  S    +++L          KI     +++ +  L   II +   L     + L  
Sbjct: 181 TRDMTSSKISMNTLIPQNKTDKILKIYNESKRMLENYILSYLIIILITFLETLIVFSLFK 240

Query: 238 VPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
           +   + L +I AI  ++P  G   I      IYL I  N    T L +   I + ++ + 
Sbjct: 241 IKYALILSIICAIADLLPIIGIGAIYLPLAIIYLAIFNNYITCTGLII-SYILVSVIRQI 299

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           + P +V   + +  +     L  G++  G +G+  
Sbjct: 300 IEPKIVSSSLGVHPVAVLAALFIGLKADGFIGIIF 334


>gi|288957925|ref|YP_003448266.1| hypothetical protein AZL_010840 [Azospirillum sp. B510]
 gi|288910233|dbj|BAI71722.1| hypothetical protein AZL_010840 [Azospirillum sp. B510]
          Length = 370

 Score = 72.9 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 37/314 (11%), Positives = 100/314 (31%), Gaps = 29/314 (9%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +  + V L+ + G    + + +++      +             +   I  V++  L   
Sbjct: 54  VAALGVFLWRVSGTLLLIFTGVLLAILLQRLTGLVQRAAGLGHGWSLAIVLVTLALLVGG 113

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +  +      ++ +L  +V  A          +  +P G                    
Sbjct: 114 GVWLMGTSMAAQLGQLQEQVAKA----------MDMLPDG-------------------W 144

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +  L+                  +      + ++ A  +         + +  L     
Sbjct: 145 RQRILEQGRDWPWMNQLGSVASGLVYVVGDAVVVMFAALYLAASPGVYQRGVVLLVPPAG 204

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                ++  +    +    +G  +     G+++ +  WL G+PS +ALG++  ++  IP 
Sbjct: 205 QTRACEVMAVAGDSLWKWLIGQFVAMAAVGVMIAAGLWLLGIPSALALGMVAGLLEFIPL 264

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             P+     ++ +    +  +A  +     +   +    + P L    + LP + T   +
Sbjct: 265 LGPVLAAVPALMIGFAQSPQDALWVAGLYLVIQQVEGNLITPLLQKRVVDLPPVITIGAI 324

Query: 317 VGGVRTMGLLGLFI 330
             G    G++G+F+
Sbjct: 325 AAGGVLFGVMGMFL 338


>gi|326384783|ref|ZP_08206459.1| hypothetical protein SCNU_17662 [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326196445|gb|EGD53643.1| hypothetical protein SCNU_17662 [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 366

 Score = 72.9 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 48/315 (15%), Positives = 98/315 (31%), Gaps = 21/315 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + + +  +  + G  APV  AL++     P+      ++     +LA +  V  +   +V
Sbjct: 28  IVVAVAGMKLIAGLIAPVFLALMLTIAVHPMGRWL--RRHGCPAWLAALTLVIGVYGILV 85

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L     Y    +  L+ +        +                      L         
Sbjct: 86  ILFGSIIYSAARLTTLMPQYADKFDSIVDD----------------LKHFLGEHGVNSES 129

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               L       I   A       +     ++ +++   F   D    S +L +L     
Sbjct: 130 IHNMLSNVDAGKIISAAGSLLSGLVSTTSGLVLVLVVALFMAVDAVGFSDRLTALDR--L 187

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
                          R+  +  T+  +   ++   A W  G+P  +  G+++ I   IP 
Sbjct: 188 RPNVSVALNNFAAGTRTYLVVSTVFGLIVAVLDAGALWALGIPLPLLWGLLSFITNYIPN 247

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G  +     +I  L+ G       + +  +    ++   ++P  VG  + L    TF  
Sbjct: 248 IGFVLGVIPPAILGLLDGGWSKMLIVIVVYSAINVVIQSIIQPKFVGDAVGLSTTLTFLS 307

Query: 316 LVGGVRTMGLLGLFI 330
           LV     +G LG  +
Sbjct: 308 LVVWTWILGPLGAIL 322


>gi|125717110|ref|YP_001034243.1| permease, putative [Streptococcus sanguinis SK36]
 gi|322377490|ref|ZP_08051981.1| putative membrane protein [Streptococcus sp. M334]
 gi|125497027|gb|ABN43693.1| Permease, putative [Streptococcus sanguinis SK36]
 gi|321281690|gb|EFX58699.1| putative membrane protein [Streptococcus sp. M334]
          Length = 298

 Score = 72.9 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 58/289 (20%), Positives = 109/289 (37%), Gaps = 6/289 (2%)

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH-LSH 129
           + + +V L  +     L +  L +     +Q G  +   L+ +   + +SE  TK  LS 
Sbjct: 11  IAMVLVFLSLILIVICLLVLVLPTLAQTISQLGAVLSTVLTQLGKLLDSSEFVTKDMLST 70

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S      + +    I F+    S  G       ++   +I+  F F      ++    
Sbjct: 71  IVSGIQGQSSSISQALITFLSGLTSNIG-NIFSSIMNAFLIIVFTFLFLSSKEHLAAMTS 129

Query: 190 SLGEHLFPAY----WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            L + +FP         I ++  +      +   I A+  G+++   Y L G+P  V  G
Sbjct: 130 RLLKVIFPEKVVTKLTYIGQVALETYDQFLMSQLIEAVIIGVMIAVGYSLFGLPYGVMTG 189

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +   +++ IP   P+    V    +   +   A    L   +   I    + P +VG  I
Sbjct: 190 IFAGVLSFIPYVGPMIACVVGAIFIFTVSPTQALLSLLLYQVIQLIEGNLIYPRVVGQSI 249

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            LP + T      G    GLLG+     + A+I  + KE ++A +   +
Sbjct: 250 GLPAIFTLAAASIGGNLFGLLGMIFFTPIFAVIYRLVKEFVVAKENQLD 298


>gi|322375735|ref|ZP_08050247.1| hypothetical protein HMPREF0849_01450 [Streptococcus sp. C300]
 gi|321279443|gb|EFX56484.1| hypothetical protein HMPREF0849_01450 [Streptococcus sp. C300]
          Length = 298

 Score = 72.9 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 104/291 (35%), Gaps = 7/291 (2%)

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++++ +F+  +L +    +L +  L   +         V   L  + G           L
Sbjct: 11  IAMVLVFLALILIVIALLVLVLPTLAQTISQLGTVLSTVLTQLGKLLGSSEFVT--KDML 68

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           S   S      + +    I F+    S  G       ++   +I+  F F      ++  
Sbjct: 69  STIVSGIQGQSSSISQALIGFLSGLTSNIG-NIFSSLMNAFLIIVFTFSFLSSKEHLAAM 127

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII----AIGEGLVLGSAYWLAGVPSHVA 243
              L +   P         + +V   T+    +I    A+  G+++   Y + G+P  V 
Sbjct: 128 TSRLLKVFLPEKVVIKLTYIGQVALETYDQFLMIQLIEAVIIGVMIAVGYSVFGIPYGVM 187

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            G+   +++ IP   P+    V    +   +   A    L   +   I    + P +VG 
Sbjct: 188 TGIFAGVLSFIPYVGPMIACVVGAIFIFTVSPTQALLSLLLYQVIQLIEGNLIYPRVVGQ 247

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            I LP + T      G    GLLG+     + A+I  + KE ++A +   +
Sbjct: 248 SIGLPAIFTLAAASIGGNLFGLLGMIFFTPIFAVIYRLVKEFVVAKENQLD 298


>gi|255532211|ref|YP_003092583.1| hypothetical protein Phep_2317 [Pedobacter heparinus DSM 2366]
 gi|255345195|gb|ACU04521.1| protein of unknown function UPF0118 [Pedobacter heparinus DSM 2366]
          Length = 377

 Score = 72.9 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 63/347 (18%), Positives = 139/347 (40%), Gaps = 18/347 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M++  L  +  +  + + +I   L        PV+ A  I     PI+      K     
Sbjct: 1   MKDMPLTVRRSIELLGIALIGAILVIGNDIIMPVIMAFFISIVLLPIFRFLKKHKF--PE 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWA 119
            +A+I  + ++ +F+  +++ F   +  +     ++    N H   +  W S I      
Sbjct: 59  IVAIILPILLVAIFVGVIVWFFSAQIGVLVADFPQIKNNVNSHLKSLSEWFSTI------ 112

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                 H+S  + +K ++E      G+       +   +  +   + ++ + I L  FY+
Sbjct: 113 -----SHVSTREQMKFITEKSDDLLGMAGKAASGAAVTLSSIFVFVGLLPIYIYLMLFYK 167

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D   + + +    +       K+       +I++  +G+ I      ++LG    L G+ 
Sbjct: 168 D--ILLRFIFMWFKSDHHPKVKEAIYETEAIIKNYLVGLLIQVTYMTILLGGILLLVGIK 225

Query: 240 SHVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
             + +GVI AI+ +IP    +      V + L     ++    +    A+  F+ +  L 
Sbjct: 226 HALLIGVIFAILNLIPYVGALIGNIIGVLLTLTSSTELWPVITVLGVIAVVQFLDNNILM 285

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           P +VG  +K+  L    G++ G    G+ G+F+   ++A++ VI+  
Sbjct: 286 PRIVGSKVKINALFAILGVIVGGSIAGVSGMFLSMPIIAVLKVIFDR 332


>gi|325981410|ref|YP_004293812.1| hypothetical protein NAL212_0713 [Nitrosomonas sp. AL212]
 gi|325530929|gb|ADZ25650.1| protein of unknown function UPF0118 [Nitrosomonas sp. AL212]
          Length = 354

 Score = 72.9 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 58/339 (17%), Positives = 133/339 (39%), Gaps = 17/339 (5%)

Query: 14  WMIMFIILVSL-YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           W+++  +   L Y L     P L A +I +   P+ S    +K    T  AV+  + ++ 
Sbjct: 14  WLVLACVAGGLIYLLSPILTPFLLAAVIAYICNPMVSYMADRKIPR-TMGAVLVMLLLLG 72

Query: 73  LFIVPLLFLFYYGMLEMKELVSK----VVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +F   +L +      E   L+ K    + +   H IP      DI      + L      
Sbjct: 73  VFAALILIMVPLFEKEANRLLDKMPTYLDMLKNHVIPWLESRLDISLQPDMNVLREALSE 132

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           H +S   ++   L +             GM  +++ ++++ + + LF+  RD   + + +
Sbjct: 133 HWKSAGGVAAKMLPSLTSG---------GMAVVEFVVNLLLVPVVLFYLLRDWDMLIKLI 183

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D +    +     +++R   +++     G   + +   +   +  WLAG+   + +G++ 
Sbjct: 184 DEMIPRYWHDQISQLARETDRILAEFLRGQLSVILLMSICYITGLWLAGLEFALPIGLVA 243

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--DKTLRPFLVGGPIK 306
            I+  +P    I    ++ +  +      +  + +W    +  +     + P+LVG  I 
Sbjct: 244 GILVFVPYLGMIVGLMLATFAAMMQFQDWSGVITVWAVFGIGQMLEGMLITPWLVGDRIG 303

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           L  +   F L+   +  G  G+ +   + A++ V  +  
Sbjct: 304 LHPVVVIFALMAFGQLFGFFGILLALPVSAVMLVWLRHF 342


>gi|288957469|ref|YP_003447810.1| hypothetical protein AZL_006280 [Azospirillum sp. B510]
 gi|288909777|dbj|BAI71266.1| hypothetical protein AZL_006280 [Azospirillum sp. B510]
          Length = 342

 Score = 72.6 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 54/331 (16%), Positives = 112/331 (33%), Gaps = 10/331 (3%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + +  +L  LYF +    P++ ALI+ F   P+  +            AV+         
Sbjct: 6   LFVIAVLFMLYFGRDVLLPIMLALILSFLLRPLVRALYRVGVPEGIGAAVLVITL----- 60

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
                 +              V    +    +   L DI  G+  +   ++ +       
Sbjct: 61  ---FGGVLLAVYTLSAPAAEWVNRMPRVLHELEFKLGDIRAGIERAREASRQIEQITQET 117

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                  +   +            +       +I  ++  FF  R   S+   + ++ + 
Sbjct: 118 GNETGPAREVVVRGPSLMEQAVSQVESVLANVVILQVLLYFFLARGRHSLEALIGTMRDV 177

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
               ++  ++  + + I +  L +T+I    GL  G   WL G+P+    GV+ A+   I
Sbjct: 178 DDRVHYAMVAATLQQNIAAYLLTITLINAMLGLATGLVMWLWGLPNPALWGVLVALANYI 237

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLF--LWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P   P   T V   + +       T L   L       I    L P +VG  + L  +  
Sbjct: 238 PFIGPAVMTGVLFLVSVMTFEGIGTILLPPLSFVALTTIEGNFLTPMIVGRRLALNPIAV 297

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           F  ++      G+ G  +   ++A++ +++ 
Sbjct: 298 FVSILFWGWLWGIPGALLAVPILAILKILFD 328


>gi|149412846|ref|XP_001513187.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 714

 Score = 72.6 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 89/252 (35%), Gaps = 9/252 (3%)

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
           +   ++    W K +     + +     L    +  +       G   L++ LS++  + 
Sbjct: 440 LSVSIFGHRAWPKEILESLWIVMSRNVSLLFTTVTTLVTILFYSGTALLNFVLSLVIFLT 499

Query: 173 ALFFFYRDG---FSISQQLDSLGEHLFPAYWKKIS-RIVPKVIRSTFLGMTIIAIGEGLV 228
            LF+        +   + + SL     P     I  + V + IR  F     +A   GL 
Sbjct: 500 TLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIVGQSVEEAIRGVFDASLKMAGFYGLY 559

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIK-GNIFNATCLFLWGA 286
               + + G+        + AI+  +P  G   +     + L +  G    A  L ++  
Sbjct: 560 TWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWLTQGAGCKAILLLVFHL 619

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           +  + VD  +   + GG        T   + GG   +GL G  IGP+L+ ++ V      
Sbjct: 620 LPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAIIGPILLCILVVASNIYS 676

Query: 347 MAIKENKEKISS 358
             +      +S+
Sbjct: 677 AMLVSPTASLST 688


>gi|110635434|ref|YP_675642.1| hypothetical protein Meso_3105 [Mesorhizobium sp. BNC1]
 gi|110286418|gb|ABG64477.1| protein of unknown function UPF0118 [Chelativorans sp. BNC1]
          Length = 374

 Score = 72.6 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 56/352 (15%), Positives = 119/352 (33%), Gaps = 32/352 (9%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q     + + + +  LY ++   APV  A+++G    P+     ++K    +  A +A +
Sbjct: 30  QASAIGLAIAVAIAGLYAMRFLAAPVSLAIVVGLMLSPVAQRLENRKLP-PSLSAAVAVL 88

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +      ++ +                       P+  W   +P      +L   +LS
Sbjct: 89  IFIFSVGFLVVAVAA---------------------PLTSWAGRVPEIWRELQLQLTNLS 127

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL--------SIIFMIIALFFFYRD 180
            P          ++    +     +   G       L        ++IF+    FF    
Sbjct: 128 QPLDTIRSIREEIRNVTGESNVTVSVEDGSAMESVALLAPAVIAQALIFLASLYFFIATR 187

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
             +    L      L       I R V +++ +  L +TII I  G  +G + WL  VPS
Sbjct: 188 NDTRLTVLRLCSGRLLRWRVAHIFRDVEELVSNYLLAITIINICLGFAVGISLWLIDVPS 247

Query: 241 HVALGVITAIMAMIPGGAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
               G +  ++  I    PI+     + +      +I+ +    L   +   I  + + P
Sbjct: 248 APLWGAMAGLLNFIVYIGPITMAVILLGVGFASFDSIWGSISPMLIYLLINGIEAQFVTP 307

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            ++G  + L     F  +   +   G +G F+    + +   + +  +   +
Sbjct: 308 SVIGRRMTLNPFLVFLAITFWLWLWGPIGGFVAVPALLVFFAVARNILPGFE 359


>gi|302386575|ref|YP_003822397.1| protein of unknown function UPF0118 [Clostridium saccharolyticum
           WM1]
 gi|302197203|gb|ADL04774.1| protein of unknown function UPF0118 [Clostridium saccharolyticum
           WM1]
          Length = 410

 Score = 72.6 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 115/335 (34%), Gaps = 21/335 (6%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKE-----------ESSTFLAVIATVSVMCLF 74
            + G   PV+   ++ +   P+Y+                     +  + +AT+  +   
Sbjct: 42  LVIGILMPVIYGAVLAYLLLPVYNKSRDLTNHILSSAWKNENGVKSVSSAMATLVSLIFL 101

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLA-NQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            V ++ LF+  + E+   V  +  +  ++   +  WL  +     A E     +     L
Sbjct: 102 FVIVVGLFWMIIPEIYNSVMGLQESLGENINDLALWLQKMFEDNPAVE--QAVIPIYDRL 159

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCL---SIIFMIIALFFFYRDGFSISQQLDS 190
               + ++ ++ +  +        +  L   L   +I+  +I + +      ++S Q   
Sbjct: 160 TSQLQNWMTSDLVPNMSMLIGSLSIGLLSVVLVLKNILIGVIVMVYLLNIKGTLSAQCKK 219

Query: 191 LGEHLF----PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           +   +F            R V +V      G  + ++  G++         +P  + + V
Sbjct: 220 IIYSVFSVKTANRAIDEIRFVHRVFGGFITGKILDSLIIGIMCFVLLNAMKMPYALLVSV 279

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           I  +  +IP   P      S +L++  +        ++  +        L P ++G    
Sbjct: 280 IVGVTNVIPFFGPFIGAVPSAFLILLVSPVKCLYFLIFILLLQQFDGNILGPKILGQSTG 339

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           LP     F ++     MG +G+ I     A+   +
Sbjct: 340 LPSFWVLFSILFFGGLMGFVGMIIAVPTFAVFYSV 374


>gi|237807694|ref|YP_002892134.1| hypothetical protein Tola_0920 [Tolumonas auensis DSM 9187]
 gi|237499955|gb|ACQ92548.1| protein of unknown function UPF0118 [Tolumonas auensis DSM 9187]
          Length = 358

 Score = 72.6 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 55/353 (15%), Positives = 120/353 (33%), Gaps = 12/353 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P  +  + ++      +YF     APVL+AL+I +    +   F+ +       
Sbjct: 10  RRRFSDPNAVTLFWLLVGGFTVIYFYGDILAPVLAALVIAY----LLEWFVQRLMHIGLG 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
               +T+ V+    + LL  F    +  ++ ++ V            +L  +P       
Sbjct: 66  RKAASTLVVLLFIGLMLLVGFGILPIVFRQGMTLVKEVPTMLANATEYLKKLP---QLYP 122

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                        ++ +  L  +G+  +  F+    M      + ++ + + +FF  +D 
Sbjct: 123 ELVDSSLVDSLSSVIQDRLLTNSGV--LVSFSFASLMNLAVVLVYMVLVPLLIFFMLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            S+         +       ++   + + I +   G  I  +    V  + + L G+   
Sbjct: 181 DSLLVMTKRFLPY-NRELVIRVWLEMNEQIANYIRGKVIHILVVSAVNYAVFALMGINYA 239

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPF 299
           + LG+   +  +IP  GA      V +  L + G       L L   I   +    L P 
Sbjct: 240 LLLGISVGVSVLIPYIGAVAVTIPVIVVALFQWGVSPEFAYLMLAYTIVQTLDANILTPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L    + L  +     ++      G  G+F    L  L+  +      + + +
Sbjct: 300 LFSEAMNLHPIAIILAVLIFGGFWGFWGVFFAIPLATLVKAVVNSWPGSSRTD 352


>gi|110801515|ref|YP_699897.1| sporulation integral membrane protein YtvI [Clostridium perfringens
           SM101]
 gi|110682016|gb|ABG85386.1| sporulation integral membrane protein YtvI [Clostridium perfringens
           SM101]
          Length = 354

 Score = 72.6 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 53/335 (15%), Positives = 125/335 (37%), Gaps = 9/335 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF-LKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M+  ++  + I  + I++ ++   +F    +  P L A I            I K + + 
Sbjct: 1   MKNLIIKSEKISVFFILYTLIFFTFFNTLKYTLPFLLAFIFSLLLKTPTQFLIKKFKLNV 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVL-ANQHGIPVPRWLSDIPGGMW 118
              + I+T     + ++           E   L + +    N +      +   +   + 
Sbjct: 61  GLASFISTFIFFLIIVILFTLFITSLAYESSSLTNYIQEIINTNSKEFQNYFISLQNWIE 120

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY---CLSIIFMIIALF 175
            + +    L+  ++  I S   +    + F      +  ++        + +IF +I+ +
Sbjct: 121 VNFIDNAVLNLIKNTLISSFKEITVLILSFGTELIQKVFLLISYLPYTFMLLIFTVISTY 180

Query: 176 FFYRDGFSI--SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           F  ++  +I  S+ L +     +      I   + K+  +       +     ++    +
Sbjct: 181 FLSKELNTINFSKTLSNYLNSNYSNRILTILYEIKKMFLTYCFSYLFLIFISFVLTFLGF 240

Query: 234 WLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
               +   + L VI A++ ++P  G P+ +  +       GNIF+A  LF+   I +F++
Sbjct: 241 SFLNIKYALLLSVIAALLDLLPVLGMPLIYFPLIFISYNSGNIFSAISLFILY-IFIFLL 299

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            + L P L+   + +  L     +  G+   GLLG
Sbjct: 300 RQFLEPKLMASTLGIHPLLILICIFIGLELNGLLG 334


>gi|260494347|ref|ZP_05814478.1| permease [Fusobacterium sp. 3_1_33]
 gi|260198493|gb|EEW96009.1| permease [Fusobacterium sp. 3_1_33]
          Length = 364

 Score = 72.6 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 121/332 (36%), Gaps = 8/332 (2%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           K +F  ++ ++ I     PI      K + +      ++ + V+ +FI+  L +    + 
Sbjct: 37  KDYFMTIIMSIFIAILLEPIVKYLKKKSKINDILAISLSIIFVILVFIILSLIVIPEIIS 96

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            +K L       ++  I +     +I   +    ++T ++    +      +   TN   
Sbjct: 97  SLKVLNDIYPYISEKAITIG---KNIANYLAEKNIYTINMDEVNNYFTNFISNNTTNITK 153

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP----AYWKKI 203
                        + +  ++    +  F    D   + + L+++ + +F      Y    
Sbjct: 154 LASSLLGSLVDWTIGFT-NLFLAFVLAFLILLDKKHLIKTLENIIKIIFGVKNTPYIMNK 212

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
             +   +      G  I++   GL +     + G P      ++  I  MIP    I   
Sbjct: 213 LSLSKNIFLGYVSGKIIVSAIVGLCVYVILLVTGTPYAALSAILLGIGNMIPYVGSIIGG 272

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
            ++ +L++         L +  AI   +    + P ++G  + L        ++      
Sbjct: 273 IIAFFLILLVAPIKTIILLVAIAISQLVDGFIVGPKIIGNKVGLNTFWVIVSMIIFGNLF 332

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G++G+F+G  +M+++ + + + +   ++  E+
Sbjct: 333 GIVGMFLGAPIMSILKLFYIDLLKKAEQGGEQ 364


>gi|325181860|emb|CCA16315.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 749

 Score = 72.6 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 76/202 (37%), Gaps = 10/202 (4%)

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK---KISRIVPKVIRSTFL 216
           F+   +   F I +LF+      +    ++   E L P   +   ++   + KVI   F 
Sbjct: 336 FVSLGIRAFFFISSLFYLLC---TKWDPIERFVEDLLPIQNEKRPQVVHSIRKVIEGVFF 392

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNI 275
               ++    LV   ++ +           +T  ++++P   P +     ++ + +  + 
Sbjct: 393 VPLKMSSLHALVTLISFSIVRADFVYLATTLTFFISIVPIIPPYLVCVPWALAIGVTSSF 452

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             A  LF    I   I+D  L        + L    +   +V GV   G  G+  GP+ +
Sbjct: 453 IKALILFCVQYIAFTILDDMLY---EKSIVALNSYVSALSVVFGVYVFGFEGVIFGPLSV 509

Query: 336 ALIAVIWKESIMAIKENKEKIS 357
             +   ++ S   I+  ++ ++
Sbjct: 510 CGVYFAYEVSNHGIQAAQDDVT 531


>gi|257053164|ref|YP_003130997.1| protein of unknown function UPF0118 [Halorhabdus utahensis DSM
           12940]
 gi|256691927|gb|ACV12264.1| protein of unknown function UPF0118 [Halorhabdus utahensis DSM
           12940]
          Length = 336

 Score = 72.6 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 108/331 (32%), Gaps = 25/331 (7%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++  +   I L+++  L   F  V  A+ + +  +P+     ++        A ++T   
Sbjct: 9   VLAGLFGAISLLAILTLWSVFWTVFFAITVAYVLYPVRRRLAAR-GLGPRVAAGLSTAVA 67

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
               +  L  L Y   +                      + D+P     + L   H    
Sbjct: 68  FVGALGVLAPLGYAVYVRRSAFF--------------DMVGDLPPEFSITVLEMSHTIDV 113

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            ++  +      +         A           L     ++ ++         ++    
Sbjct: 114 TTVVDVVRETAGS--------MALDAASAAPVLALKFFLFVLLVYALLLKPRMPARAARR 165

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +    +    + +   +   +   ++      +G  ++    ++L G  + V L V++ +
Sbjct: 166 VVPAEYHDVVQALHERLRDTLFGLYVLQGATGVGTFVIALPVFFLLGYDAAVTLAVLSGV 225

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGGPIKLP 308
           +  +P   P     V +   +      A  L           + D  +RP L      LP
Sbjct: 226 LQFVPIIGPSVLIGVLVLTEVLAENVTAAILVGVVGFVFVAGLPDVLIRPRLSAVAADLP 285

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
               F G  GGV +MG +G+  GPV++AL+A
Sbjct: 286 GSLYFIGFTGGVLSMGAIGIIAGPVVVALLA 316


>gi|327540823|gb|EGF27384.1| protein belonging to uncharacterized protein family UPF0118
           [Rhodopirellula baltica WH47]
          Length = 394

 Score = 72.6 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 56/328 (17%), Positives = 121/328 (36%), Gaps = 10/328 (3%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           F+ L +LY  +  F P+L A    + +       + +    S   A    +++  +F   
Sbjct: 49  FLTLYALYIGRNLFMPILVAG-FAYLTLRPVVRAMGRIGIPSGVAATAIMLAIATVF--- 104

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
              + Y      ++++ +V  +         ++ D    +  +       +  +++    
Sbjct: 105 -GTIGYVLSGPAQDMLQQVPGSMPEVKEKLGFIFDHLETVNQATEDISDTADKENITSEE 163

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
           +  +            S       +    +      LFF    G S+   + S       
Sbjct: 164 KP-VPVEIKQPAWTTTSPLIAGTGNAVSFVSIAAALLFFLMAAGDSLIVSVVSSLPSFSS 222

Query: 198 AY-WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
              + ++   V   + S    +T I    G+ +G+A WL G+PS +  GV    +  IP 
Sbjct: 223 KRRFIEVLEGVQDALSSYLAWVTCINACLGVCIGTAMWLLGMPSPLLWGVAAMFLNFIPI 282

Query: 257 GAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
              +   A+  +  L+   +   A  +    A    +  + + P L+G  +KL  +  F 
Sbjct: 283 VGAMVGIAMVFFVALVSFEHASFAFVVAGTYATLTTLEGQFITPTLLGKSMKLSSVLVFI 342

Query: 315 GLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            +V      G+LG+F+  P+L+A++ V+
Sbjct: 343 SIVIWGWMWGMLGVFLAVPILIAVVMVM 370


>gi|291299126|ref|YP_003510404.1| hypothetical protein Snas_1608 [Stackebrandtia nassauensis DSM
           44728]
 gi|290568346|gb|ADD41311.1| protein of unknown function UPF0118 [Stackebrandtia nassauensis DSM
           44728]
          Length = 371

 Score = 72.6 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 104/301 (34%), Gaps = 21/301 (6%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
              +L A  +     P+ +                  + V+ +    L+ +    + E+ 
Sbjct: 62  LIVILVAGFLAIGLNPLVTRIQGW-GMPRGLAVATVCLGVLLIVCGGLMSIVPAIITEVT 120

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK----TNGI 146
           + V  +    QH               ++ + W K+L     L   ++  LK    +  +
Sbjct: 121 KFVEAIPGLVQH---------------YSEQEWLKNLDKKYHLLDQAQEALKGIKPSTVL 165

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
           +     A   G +       ++  ++ ++F       +      L         + +  +
Sbjct: 166 EAAGGLAGVVGGVVGSVFDGVMISLLTIYFLVSF-DRLKGGFYKLLPAPRRQRAQALGDV 224

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           +   + +  +G   I    G+      + AGVP  +AL  + AI+ +IP         V 
Sbjct: 225 ILAKVGAYTVGALGIGATAGVCSYVFMFFAGVPYAIALAFVVAILDLIPQIGATLGAVVV 284

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
             + +  +++ A    ++  I   + +  + P ++   +K+  L    G++ G   MG++
Sbjct: 285 TLVGLTVSVWVALACAIFFIIYQQLENWVIYPTIMRRSVKVSDLAAILGILIGAGLMGVV 344

Query: 327 G 327
           G
Sbjct: 345 G 345


>gi|312869471|ref|ZP_07729627.1| putative membrane protein [Lactobacillus oris PB013-T2-3]
 gi|311094979|gb|EFQ53267.1| putative membrane protein [Lactobacillus oris PB013-T2-3]
          Length = 371

 Score = 72.6 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 43/345 (12%), Positives = 115/345 (33%), Gaps = 26/345 (7%)

Query: 16  IMFIILVSLYF-------LKGF-------FAPVLSALIIGFTSWPIYSSFIS----KKEE 57
           ++ +I   ++         + F       F P++ +  + +   PI    +     +   
Sbjct: 14  LLLVIAALIWVCTKIQFIFQPFLTFISVVFVPLILSGFLYYMLNPILKLLLKVRLGRFRL 73

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGG 116
           +    +++  + ++ +    L  L    + E+  LV+ +   A+     +   +   P  
Sbjct: 74  NRGVASLLLVLMLILIICGGLAMLIPPVVKEITSLVTHLPQTASGLQRLLNDTIQHSPLK 133

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
                 + +   H   L   ++  LK      +            +  +  I + + LF+
Sbjct: 134 NIDLTAYYRQFDH--QLANYAQVVLKG-----LSSRIGDVINAVTNITVVTITVPVMLFY 186

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
             +DG  +   +             ++   +   + S   G  I  +   +     Y L 
Sbjct: 187 MLKDGSKLGPSIQKWLSPHHAKEVDQLLGKMNDTLSSYIAGQVIECLFVAVFTSLGYLLI 246

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
             P  + LG++  +  +IP   P    A ++++ +         + +   +   I    +
Sbjct: 247 HQPLALVLGIVAGLCNIIPYIGPYIGIAPALFVSLTMAPQKLILVIIVVIVVQQIDGNVI 306

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            P ++G  +++  L     L+      G+ G+ +     A++  I
Sbjct: 307 YPNIIGKTLQIHPLTIILLLLAAGHIAGIAGMILCIPFYAVLKTI 351


>gi|165976179|ref|YP_001651772.1| putative permease [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|307249977|ref|ZP_07531949.1| Permease PerM [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|165876280|gb|ABY69328.1| putative permease [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|306858037|gb|EFM90121.1| Permease PerM [Actinobacillus pleuropneumoniae serovar 4 str. M62]
          Length = 353

 Score = 72.6 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 59/354 (16%), Positives = 118/354 (33%), Gaps = 15/354 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           ++   +PQ +    I+ I    +YF      P+L A++  +   WPI       K     
Sbjct: 10  KQKFNDPQTVALLGILLIGFGIIYFFSDLIMPLLIAIVFAYLLEWPIKLLTQKLKFPR-- 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEM-KELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
              +++ + V+  FI    FLF   +  +  + V+ +         +  WL  +P     
Sbjct: 68  ---LLSLILVLGSFISLSTFLFVVMLPTLWNQAVTFIRDLPSMLNLLNAWLEALPEHYPE 124

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              +    S    LK     F ++     +    S  G+    + + ++      FF  +
Sbjct: 125 LIDYAMLDSLMNMLKEKILGFGESLLALSVNSIISLVGLGIYAFLVPLMV-----FFLLK 179

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D     +                +   + + I +   G  +  +  G+V  + +    + 
Sbjct: 180 DKPLFVRGFIKFLPK-NRRLAANVWFEMQQQIANYIRGKVLEILIVGIVTYAIFLFFDLR 238

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLR 297
             + L V   +  +IP  GA +    V++  L   G   +   L L   I   +    + 
Sbjct: 239 YPLLLSVAVGLSVLIPYIGAVLVTIPVALVALFQFGLSTDFYYLLLAFVISQLLDGNLVV 298

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           PFL    + L  L     ++      G  G+F    L  L+  +        +E
Sbjct: 299 PFLFSEAVNLHPLTIIVAVLIFGGLWGFWGVFFAIPLATLVKAVINALPSNEEE 352


>gi|119510172|ref|ZP_01629311.1| hypothetical protein N9414_00910 [Nodularia spumigena CCY9414]
 gi|119465233|gb|EAW46131.1| hypothetical protein N9414_00910 [Nodularia spumigena CCY9414]
          Length = 382

 Score = 72.6 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 56/339 (16%), Positives = 118/339 (34%), Gaps = 17/339 (5%)

Query: 13  RWMIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           +W+ +  I++SLY L   +     + +A+++  T   +             F  V++ V 
Sbjct: 5   QWIGLIAIVLSLYILWQIRQVLLLIFAAVVLAVTLNRLAKRIQG-FGVRRGFAVVLSVVL 63

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
                +     +      + +EL  +V    Q       W+  +            ++  
Sbjct: 64  FFVGVVCFFWLIVPPFAQQFQELTYRVP---QGFDRFNSWIQRL--ETLIPNQLVPYIPD 118

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              L   ++ FL       I   +  F    L+  L I+ +++    F  +  +  +   
Sbjct: 119 FNHLIAQAQPFLNQ-----ILGNSFAFVSGSLEVLLKILLVLVLTGMFLAEPQAYRKLFI 173

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L    +      I       +     G  I     G++      + GV + +ALGV+  
Sbjct: 174 RLFPSFYRTKVDGILDKCELSLERWITGAFIAMSVVGILSVIGLSVLGVKAALALGVLAG 233

Query: 250 IMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            + +IP  G  +S        L+    +    +F+   +   I    + P ++   + L 
Sbjct: 234 FLNLIPNLGPTLSLIPAMAIALLD-TPWKPLLVFILYFVVQQIDANLVTPTIMANRVSLL 292

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              T    +  V   G LGLF+  + + ++A IW E ++
Sbjct: 293 PAVTLISQLFFVTFFGFLGLFLA-LPLTVVAKIWLEEVL 330


>gi|256395388|ref|YP_003116952.1| hypothetical protein Caci_6257 [Catenulispora acidiphila DSM 44928]
 gi|256361614|gb|ACU75111.1| protein of unknown function UPF0118 [Catenulispora acidiphila DSM
           44928]
          Length = 389

 Score = 72.6 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 43/312 (13%), Positives = 100/312 (32%), Gaps = 21/312 (6%)

Query: 49  SSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR 108
                +   S +  A +A  +++   +   ++L    +++    + + +           
Sbjct: 95  RRLTGRIR-SRSLAAGVAC-ALLAGVVGGTVWLVARAVVDAAPGIGRALG---------- 142

Query: 109 WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII 168
            +S   G     +L     +  +SL   + + L    +  +           L       
Sbjct: 143 RISRRVGAGSEEDLLQSAANGLRSLGSEANSALIAGVVHGVSTAVQILAGSVLS------ 196

Query: 169 FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLV 228
             ++ ++F  RDG                    +++R     +     G T IA+ + ++
Sbjct: 197 --VVLIYFLIRDGGRFEAFASRSLPEGTADVAVRMARRAWDALSGFMRGTTFIALIDTVL 254

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI-KGNIFNATCLFLWGAI 287
           +     + GVP    L  +  + A IP        AV++ + +  G +  A  +      
Sbjct: 255 ILIGLLVLGVPGAPGLAALVFVGAYIPFIGAFLSGAVAVLVALGDGGVGKALWVLGVVVA 314

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              +    L+P +    + L        + GG    G+LG  +   L A  + +  E   
Sbjct: 315 VQVVEGNVLQPVIQSRTVSLHPAVVMLAVTGGTAVAGILGALLAVPLTAAASGVLAELRE 374

Query: 348 AIKENKEKISSN 359
               + E   ++
Sbjct: 375 MAGRSGESSEAD 386


>gi|325125970|gb|ADY85300.1| permease [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 377

 Score = 72.6 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 85/247 (34%), Gaps = 7/247 (2%)

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
              L+ +  +   S       +L+  G     +  +  +       +     F +I   +
Sbjct: 127 LESLYDQLKAQYSSFINEILAYLQKQGWSTSGLVSYMQKGVGRVTGFLSDFFFGVIFAIY 186

Query: 177 FYRDGFSISQQ----LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
           F  DG  I+      L +L         K       +       G  I A   GL++  A
Sbjct: 187 FLYDGQRIAAYWKRNLGTLLNKKVIKGIKLFLADADRAFSGYIRGQIIDAFIVGLLVSLA 246

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
             +A VP  + +G++T +  +IP   PI    + I          A  + +   + +  +
Sbjct: 247 MLIAKVPYGLLIGLVTGLGNLIPYFGPILGYGMVILACTLSQNMTALIVGMIILLLIQAI 306

Query: 293 D-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           D   L   L+   I +  L     ++ G    G +G+ I   + AL+   ++  I   ++
Sbjct: 307 DGNILNHKLLSSAIHIHPLYVIACVIAGGAMGGFVGMLIAVPMGALLKTEFERLIAYRQK 366

Query: 352 NKEKISS 358
             EK   
Sbjct: 367 QLEKSKE 373


>gi|118471020|ref|YP_884664.1| integral membrane protein [Mycobacterium smegmatis str. MC2 155]
 gi|118172307|gb|ABK73203.1| integral membrane protein [Mycobacterium smegmatis str. MC2 155]
          Length = 379

 Score = 72.6 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 122/360 (33%), Gaps = 20/360 (5%)

Query: 3   ETMLNPQGIMRWMIMFI---ILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKE 56
             ++       W ++ I   I+  L+ +K     F PV  A ++     P    F+ ++ 
Sbjct: 12  SPLVRKAAAWSWRLLIIGGAIVALLWLIKRLEILFVPVALATMVAALLLPAVD-FMDRRG 70

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
                   +  +  + +    L F+    +    +LV ++  +      V  WL D P  
Sbjct: 71  APRGSAVALVLLGGIAVVGGILTFVVTQFIQGAPDLVEQMTRSIDG---VRNWLIDGPLH 127

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
           +   ++ +   +  ++L+   E          +   A        +     +  +  L F
Sbjct: 128 LSKEQIDSAGNTAIEALQRNQEK---------VTTGALSTAGTLTELLTGAVLTLFTLIF 178

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
             + G +I   +            +   R     +        ++A+ + + +G+   + 
Sbjct: 179 LLQGGRNIFAFVTKAFPEDVRERVRDAGRAGFHSLIGYVRATFLVALVDAIGIGTGLAIM 238

Query: 237 GVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
           G+P  + L  +  + A +P  GA I+     +  L+   +  A            +    
Sbjct: 239 GIPLALPLASLVFLGAFVPLVGAVIAGFLAVVVALLAKGLVYALITLGLIIAVQQLEGHV 298

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L+P ++G  + +  L     + GG    G++G  +    +A +    +  +      +E+
Sbjct: 299 LQPLVMGRAVSIHPLAVVLAIAGGGVLAGIVGALLAVPAVAFLNSATRVLLARDPHAEEE 358


>gi|240145907|ref|ZP_04744508.1| putative transporter [Roseburia intestinalis L1-82]
 gi|257201972|gb|EEV00257.1| putative transporter [Roseburia intestinalis L1-82]
          Length = 254

 Score = 72.6 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 81/210 (38%), Gaps = 2/210 (0%)

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           L +   D +    S        + + ++  +IA  F   +   I   L       +   +
Sbjct: 44  LMSGISDGVIDGVSGMAAGIPGFFMKLLIAVIATVFMELEFPEIKAFLKRQIPAEYQRAF 103

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +     V   +    L   +I       L +  +L G+ +  A+  I A++ ++P  G  
Sbjct: 104 RDGKNYVTGTMGKCILSYCLIFGMTFAELTAGLFLLGIKNAFAIAFIIAVLDILPVLGTG 163

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                 ++     G I     +F    + + +V   + P LVG  + L  +     ++ G
Sbjct: 164 TVLIPWAVLAFASGRISTGVGVFGLY-LVITVVRNLIEPKLVGKQMGLSPVIMLPCMLIG 222

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           ++  G++GLF+ P+L++ +  +    I+ I
Sbjct: 223 LKFFGIIGLFVVPLLVSFLKQLNDRGIIKI 252


>gi|227533850|ref|ZP_03963899.1| permease [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227188486|gb|EEI68553.1| permease [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 367

 Score = 72.6 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 60/363 (16%), Positives = 127/363 (34%), Gaps = 27/363 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E  +N   + R +++F + + L+F +   + +L   I  F    +  +            
Sbjct: 15  EKFINNLPVRRTVVLFSVFLLLWFARSIMSDILLTFIFAFLVSRLVHAVQRHVHIRP--- 71

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI--PVPRWLSDIPGGMWAS 120
                     + +VP+  L   G++         ++    G+   V  + +         
Sbjct: 72  ---------FVIVVPVYILVILGLVYAAVHYVPAIIHQTIGLFNSVQNFYNSEAFANNQV 122

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W    +   +L    +T     G+  + ++A   G + L   +S I      FFF  +
Sbjct: 123 MQWVLQSTKSLNLTEQLKT-----GVTTVLQYAGNIGAMGLTLFVSFILS----FFFTIE 173

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAG 237
             S+        +  F  Y+K +     K I +          IA+   ++         
Sbjct: 174 LDSLPAFGQLFLDSPFGWYFKDLQYFAMKFINTFGVVMEAQIFIAVVNTVITTITLLFLK 233

Query: 238 VPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           +P+  +L ++  ++++IP  GA IS   ++I     G   +   + +  A    +    L
Sbjct: 234 MPNTPSLAIMVFLLSLIPVAGAIISLIPLTIIGYTVGGWQDVLTILIMIAAIHVLEAYVL 293

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            P  +    +LP   TF  L+   R  G  GL +G  +      +     +A   +K+  
Sbjct: 294 NPKFMSSRTQLPVFFTFVVLLVAERLFGTWGLIVGIPIFTFFLDVLGVKKIAGTAHKQST 353

Query: 357 SSN 359
            ++
Sbjct: 354 YAS 356


>gi|91793712|ref|YP_563363.1| hypothetical protein Sden_2360 [Shewanella denitrificans OS217]
 gi|91715714|gb|ABE55640.1| protein of unknown function UPF0118 [Shewanella denitrificans
           OS217]
          Length = 406

 Score = 72.6 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 40/315 (12%), Positives = 106/315 (33%), Gaps = 22/315 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +IL  +        P + +  +     P     +++         ++    ++ +   
Sbjct: 20  LVVILAGIKAASPIVVPFVLSAFLAVICNPA-IVLMTRCRLPKWLAVMLLMAFIVLM--- 75

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             L+L       + E  +++ +  Q  I    W+ +                   +++I 
Sbjct: 76  -GLWLTSLVGRSVNEFSTQIPVYRQQLIEQFSWIIE--------------RLQGFNIQIS 120

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +  L            +       +   ++  +I+ + F   +  S+ +++  L     
Sbjct: 121 QQKVLDYFDPGMALSMTTNMLSGVGNVMANLFLIILTIVFMLFEAQSLPKKV-HLAMDDP 179

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
               K+I R +  V +   +   ++++    ++G    + GV   +   V+  +   IP 
Sbjct: 180 DMRLKQIDRFLQSVNQYMVIKT-LVSLATAFIVGLGLSIIGVDYALLWAVLAFLFNYIPN 238

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ I+     +  LI+     A    L       ++   + P  +G  + L  L  F  
Sbjct: 239 IGSIIAAIPAVLLALIQLGPAAAGGTALLYLGTNMVMGNVVEPKFMGKGLGLSTLVVFLS 298

Query: 316 LVGGVRTMGLLGLFI 330
           L+     +G +G+ +
Sbjct: 299 LIFWGWLLGSVGMLL 313


>gi|182624155|ref|ZP_02951942.1| putative membrane protein [Clostridium perfringens D str. JGS1721]
 gi|177910771|gb|EDT73131.1| putative membrane protein [Clostridium perfringens D str. JGS1721]
          Length = 391

 Score = 72.6 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 42/323 (13%), Positives = 99/323 (30%), Gaps = 6/323 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA------VIATVSVMCLFIVPLL 79
            +K     +  A ++               E S           +  TV+++ L      
Sbjct: 41  LVKPLILGIAIAFVLNIPMKFFERKLFRNLENSKKSWVRSAKRPLAITVTIIVLVGAISA 100

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            + +        +V        +       +++              + +     + + T
Sbjct: 101 IILFVVPQLTSSVVKLTESIPTYLKSFEVNMNNYADSTVLLSKVWDQVMNTWQEILKTVT 160

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            L      ++           +D+CL+ +  I  L    +    I + + +         
Sbjct: 161 HLFGGIASYLVGLTVDVTTAIIDFCLAFVLAIYMLSSKEKLICQIKKVMYAYIRGDIADK 220

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             +I +   +V     +G    A+  G +      +  +P    + V+    ++IP    
Sbjct: 221 ILEIGQTTNRVFSGFIIGQCTEALIIGTLCFLGMLVLRMPYAFLISVLVGTTSLIPILGA 280

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
              T  S +L+   N   A    ++      +    + P +VGG + L  L     ++ G
Sbjct: 281 FIGTIPSFFLIFIINPIKAFWFIVFIFCLQRVEGDLIYPRVVGGSVGLSSLWVMLAIMIG 340

Query: 320 VRTMGLLGLFIGPVLMALIAVIW 342
               G +G+ +G    A+I  ++
Sbjct: 341 GSAFGFIGMLVGVPTAAVIYCVF 363


>gi|158320696|ref|YP_001513203.1| hypothetical protein Clos_1667 [Alkaliphilus oremlandii OhILAs]
 gi|158140895|gb|ABW19207.1| protein of unknown function UPF0118 [Alkaliphilus oremlandii
           OhILAs]
          Length = 411

 Score = 72.6 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 57/338 (16%), Positives = 111/338 (32%), Gaps = 4/338 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
              + ++  S   L    +P L A+II +   P  +   +K      +   I    +   
Sbjct: 77  VFCVILLFQSGTVLYDVISPFLYAIIIAYIFNPFVNYIENK-GIQRIWAVFIVYFIISGG 135

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +V  L L      E++ L+  +   N                    E         + +
Sbjct: 136 VLVFSLSLLPKMTAEIRRLLDSL--PNLKEGSFGYIYDKYINYNNIIENLPVEFQGVKDI 193

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
             L    L+   +  +    +   +  +   L+I+   I  F+F +D     + L  L  
Sbjct: 194 LKLDNRKLEEIILKILSSVTNSV-IGVVSKLLNIVITPILAFYFLKDKEKFKKMLILLIP 252

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
             F      +S+ +  V+     G  I+A   G++      +  V   V +G++     +
Sbjct: 253 KYFRKGIIDLSKDIDGVLGGFIRGQLIVAFIIGVLTTIIMMILRVEFAVLVGIVAGFADL 312

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   PI      I     G +     + +   +        + P ++   + +  +   
Sbjct: 313 IPYFGPIIGIIPGIIFASFGGLNKVLWVIVLFFVIQQAESSIISPKIISDKVGIHPIVVI 372

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             L+ G +  G+LGL I      +I VI K  I  I  
Sbjct: 373 LALIIGGKFFGVLGLLIAVPAAGIIKVIGKHFINYIAN 410


>gi|238917949|ref|YP_002931466.1| putative permease [Eubacterium eligens ATCC 27750]
 gi|238873309|gb|ACR73019.1| putative permease [Eubacterium eligens ATCC 27750]
          Length = 432

 Score = 72.6 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 54/344 (15%), Positives = 126/344 (36%), Gaps = 29/344 (8%)

Query: 31  FAPVLSALIIGFTSWP----IYSSFISKKEE--SSTFLAVIATVSVMCLFIVPLLFLFYY 84
            +P L   +I    +P    +Y+ F        S     +++ +    + +     L  +
Sbjct: 86  LSPFLIGAMIALVLYPFIKTLYNRFFMGVCHIKSRKAAKMLSILVAYLIAVGAFAILIGF 145

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF---- 140
            + ++ + ++++          P W  +I    W +E   KH +       +++      
Sbjct: 146 VVPQIYKSITEIAN------QAPVWYENI--RNWFTEFEDKHANSSIDYNFINQKIEDAL 197

Query: 141 -----LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                  T+ +  +  +     M  L   L+++  II   +   D  +I          +
Sbjct: 198 PKLVDYMTDALTNMVPYILNTSMAILSGVLNLVIAIIVSIYMISDNKNIFYHFKRFLYAV 257

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTII----AIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
            P      +RI+ K   S F+   I     +I   ++      +  +P  V + VI  I 
Sbjct: 258 LPKKTADNTRIICKNCASIFINYIIGKSFDSIIVMIICFIIMLILKLPYAVLISVIVGIT 317

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL-RPFLVGGPIKLPFL 310
            MIP   P     +   +++  +      +F+   + +  VD  L  P ++G    L  +
Sbjct: 318 NMIPYFGPYIGGVIGGVIIVIASPIK-LIIFVIMIVCIQQVDGLLIGPRIIGSTTGLKPV 376

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
              F +  G    G++G+F+G  + A+++ +   ++    + ++
Sbjct: 377 WVVFSITVGGALFGVIGMFLGVPVFAVLSYLLNITVQHFLDKRK 420


>gi|47092709|ref|ZP_00230495.1| membrane protein, putative [Listeria monocytogenes str. 4b H7858]
 gi|47018897|gb|EAL09644.1| membrane protein, putative [Listeria monocytogenes str. 4b H7858]
          Length = 333

 Score = 72.6 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 52/353 (14%), Positives = 113/353 (32%), Gaps = 26/353 (7%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           + R  +  +I   LY L+     +L   I  +    + +  + +       + ++  V +
Sbjct: 1   MRRVGVFILIAFVLYLLRSQMNIILLTFIFSYLITRLENFILRRISIYRQIIVLLLYVLI 60

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             + I   +        ++ +LV                                +    
Sbjct: 61  AAVIIFVFVKYIPVLADQINQLVKFGNTFLTT---------------------DSNNDFI 99

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
             +  L+  F      +        +        +++   ++   FF      +    + 
Sbjct: 100 NYIVSLANQFDIMKYTEQGVSMILTYLTNVGTVLMNVFIALMLSLFFSLGKEHLVSFTNQ 159

Query: 191 LGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                    +++                    IIA+   ++   A W+ G P  + L ++
Sbjct: 160 FSTSKIGFIYEEVKFFGSKFVATFGKVIEAQFIIALVNAILTTIALWILGFPQLMTLSIM 219

Query: 248 TAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             ++ +IP  G  IS   ++I     G +     + +   I   +    L P L+     
Sbjct: 220 VFLLGLIPVAGVIISLVPLTIIGYSIGGVEYIFYILVVVIIIHALESYVLNPKLMSAKTN 279

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKEKISS 358
           LP   TF  L+ G    G+ GL +G PV+M  + V+   +   I++ K+ IS 
Sbjct: 280 LPVFYTFIILIFGEHFFGIWGLIVGIPVVMFFLDVLGVTNQEEIEQPKDTISH 332


>gi|259416188|ref|ZP_05740108.1| membrane protein [Silicibacter sp. TrichCH4B]
 gi|259347627|gb|EEW59404.1| membrane protein [Silicibacter sp. TrichCH4B]
          Length = 380

 Score = 72.6 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 121/356 (33%), Gaps = 28/356 (7%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +   I  V ++ L     P +    I +   P+               AVI   +V+   
Sbjct: 14  LAAVIFAVIMWALGNVLMPFILGGAIAYIIDPLADRLERAGLSREGATAVITVGAVLIFL 73

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           I+ LL +    + +M +LV  +  A  +     +     P     +    + L+      
Sbjct: 74  IM-LLLIVPALINQMIDLVQTLPQAMSNLRSFAQ--EHFPSLFEDNSQVREALAGLW--- 127

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                 ++   +  +  F     M  L+  + ++ + +   +   D   +  ++D L   
Sbjct: 128 ----KIVQDKSVTLLQTFVGS-AMSLLNIVVLLVIVPVVAVYLLVDWDRMVARIDDLLPR 182

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 + ++R + +V+ S   GM ++ +  G     A  L G+   +A+G +  ++  I
Sbjct: 183 DHAPVVRHLAREIDRVLSSFIRGMGMVCVILGSYYAVALMLVGLNFGLAVGFVAGLVTFI 242

Query: 255 PGGAPISFTAVSIYLLIKGNIF---------------NATCLFLWGAIELFIV--DKTLR 297
           P    I    ++I L +                          + G   +  +     L 
Sbjct: 243 PYLGAIIGGVLAIGLALFQFWGAVEGADGEMIRQGTDWLRIALVAGIFVIGQMVEGNFLT 302

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           P LVG  + L  +     L       G +G+ I   + A+I V+ + ++     ++
Sbjct: 303 PKLVGNSVGLHPVWLLLALSVFGALFGFVGMLIAVPVAAVIGVVARFAVDQYLHSR 358


>gi|34763767|ref|ZP_00144684.1| Permease [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|27886461|gb|EAA23719.1| Permease [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
          Length = 344

 Score = 72.6 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 41/327 (12%), Positives = 118/327 (36%), Gaps = 8/327 (2%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           K +F  ++ ++ I     PI      K + +      ++   V+ +F + L  +    ++
Sbjct: 19  KDYFMTIIMSIFIAILLEPIVKYLKRKSKINDILAISLSIAFVVLIFTI-LSLIVIPEII 77

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
              ++++ +               ++   +    ++T ++    S          TN   
Sbjct: 78  SSLKVLNNIYPYISEKATTMG--KNLVNYLAEKNIYTVNMDEVNSYFTNFIANNVTNIRK 135

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP----AYWKKI 203
            +           + +  ++    +  F    D   +++ L+++   +F      Y    
Sbjct: 136 IVSALFGSLVDWTIGFT-NLFLAFVLAFLILLDKKHLTKTLENIIIIIFGVKNTPYIMNK 194

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
            ++  ++  +   G  I++   GL +     + G P      V+  +  MIP    I+  
Sbjct: 195 LKLSKEIFLNYVSGKLIVSAIVGLCVYIVLLVTGTPYAALSAVLLGVGNMIPYVGSINGG 254

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
            ++  L++         L +   I   +    + P ++G  + L        ++      
Sbjct: 255 IIAFSLILVVAPIKTIVLLIAITISQLVDGFIVGPKIIGNKVGLNTFWVMVSMIIFGNLF 314

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIK 350
           G++G+F+G  ++++I + + + + A +
Sbjct: 315 GIVGMFLGTPILSIIKLFYVDLLKAKQ 341


>gi|218439721|ref|YP_002378050.1| hypothetical protein PCC7424_2772 [Cyanothece sp. PCC 7424]
 gi|218172449|gb|ACK71182.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7424]
          Length = 353

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 63/351 (17%), Positives = 134/351 (38%), Gaps = 21/351 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLS----ALIIGFTS-WPIYSSFISKKEESST 60
           L+   ++R++++F    +L     +F  +L     A I+ F   +P++            
Sbjct: 17  LSTNNLVRFLLLFASGWALITFLDYFQDILFIFSVAGILAFCLNYPVH-YLERYLG--KG 73

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               I     + + I  L  L      ++++L   ++   ++        +  P      
Sbjct: 74  LARGIVIFLSLLVVIGGLAALIVIAFFQLQQLFDSLIQNLENIY------NSAPSWQKIQ 127

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
               +       L+   +          I         +  +  L +IF+++  FF   +
Sbjct: 128 NFLIQRNIDID-LRPFIDNITSEISSGLISFLNLLT--LLPNTFLGLIFILVISFFMLTN 184

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +      L         KK+ + + K     F G  I+ +   L+   A+ L  +P+
Sbjct: 185 GERLWDLFLLLVPQ---QERKKVEKAIQKSFIGFFRGQLILCLSLSLLSFLAFLLLQIPN 241

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             AL +I AI+  IPG GA +    +S+  +++G   +A  + +   I   I D  + P 
Sbjct: 242 AAALAIIVAILDTIPGIGATLGVIVISLITIVQGGWIDAIKVVIISIILQQIQDNYIAPK 301

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++G  + L  +  FF L+ G +  G++G+F+   +  +I  + +   M   
Sbjct: 302 VMGNTVNLNPVIVFFALMVGAKIAGIIGIFLSIPVAGVIVSLLEIDEMKSD 352


>gi|326390153|ref|ZP_08211714.1| protein of unknown function UPF0118 [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325993801|gb|EGD52232.1| protein of unknown function UPF0118 [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 341

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/349 (14%), Positives = 126/349 (36%), Gaps = 20/349 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFF----------APVLSALIIGFTSWPIYSSFISKKEESS 59
            + +  ++F+I+ ++  L  F           +P   + +I +   P+      K   S 
Sbjct: 2   QVKKVYLLFLIIGAIGLLYFFIKNWVSIKNILSPFFVSALIAYLLNPM-----VKFFNSK 56

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
            F   ++ + V  +  + +LF  +Y    +  L++++V+  +      + L  I   +  
Sbjct: 57  GFSTFLSILLVFLIVALVILFFSFYI---LPLLINEIVIFVKMIPFYTKELQKILIQLKF 113

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           +          + L                  F S      L   + +I + I  F+  +
Sbjct: 114 NYFSYLPPQFEKVLDKNLNALNNLFASRVDLVFKSTVA--ILKDIIDVIIVPIITFYLLK 171

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D     ++++ +    +   +  + + + K++         ++I   +       L  V 
Sbjct: 172 DKNVFEKEIERMIPSKYHDSFFALLKKIDKILSKYIRAQIYLSIFVAIFTSIGLSLIKVK 231

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               +G++  I+ +IP   PI     ++ + +  ++       L   +   I +  + P 
Sbjct: 232 YAFLIGILAGILNIIPYIGPILSIIPAVLIGLLDSLSKGFWALLVCLLVQQIENAFITPK 291

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           ++   + L  +   F L+ G    G+ GL +   ++A+  VI  E  + 
Sbjct: 292 IISDSVGLHPITVIFSLIAGEELFGVWGLLLSVPVVAIGKVIVTEIFIE 340


>gi|169824322|ref|YP_001691933.1| hypothetical protein FMG_0625 [Finegoldia magna ATCC 29328]
 gi|303234057|ref|ZP_07320706.1| putative membrane protein [Finegoldia magna BVS033A4]
 gi|167831127|dbj|BAG08043.1| conserved hypothetical protein [Finegoldia magna ATCC 29328]
 gi|302494982|gb|EFL54739.1| putative membrane protein [Finegoldia magna BVS033A4]
          Length = 395

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/297 (15%), Positives = 104/297 (35%), Gaps = 22/297 (7%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
              +L  +I+ +   P+   F +K     +F  +I  V V+ L I+  + +    + ++K
Sbjct: 75  INTLLIGIILSYIINPLVKYFENK-GIRRSFAILIIYVIVIFLIILLGMIVVPQTIQQIK 133

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF-- 148
           +++          I +P +++DI   +  ++   K      ++  +    ++T       
Sbjct: 134 KMI----------ISLPGFMADI--SIKVNDFNRKIFKEYPNVSKIMSNAMQTVNQKLGT 181

Query: 149 -------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                  +               L II + +  F+   D       +     +     + 
Sbjct: 182 IQTSILDMLSQTGNITGSIFTNLLRIILIPVVSFYMLLDKEKCIDFIMGFIPNKNKDKFL 241

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            +   + K       G  I+AI  G++   A  +  V   + +G++T +  +IP   P  
Sbjct: 242 SVCNDMDKAYSEFIRGRLIMAIFVGVLTAIALIIMRVDFAIIIGILTMVGDIIPYIGPFI 301

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
               +  L    +   A  + +      ++ +  L P L+G  I +  L     L+ 
Sbjct: 302 AVTPAFILAFLDSPIKAVVVVIVFVSIQWVENNILAPKLLGSKIGINPLLVIVSLII 358


>gi|163845609|ref|YP_001633653.1| hypothetical protein Caur_0006 [Chloroflexus aurantiacus J-10-fl]
 gi|222523308|ref|YP_002567778.1| hypothetical protein Chy400_0006 [Chloroflexus sp. Y-400-fl]
 gi|163666898|gb|ABY33264.1| protein of unknown function UPF0118 [Chloroflexus aurantiacus
           J-10-fl]
 gi|222447187|gb|ACM51453.1| protein of unknown function UPF0118 [Chloroflexus sp. Y-400-fl]
          Length = 386

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/356 (14%), Positives = 123/356 (34%), Gaps = 17/356 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I   +I+ + +  L+ +     P + A+I  +   P+      +               +
Sbjct: 17  ISSALIVVLTIWLLFAVTHILPPFIGAIITAYLFNPLIGWLHRRTRIGRAIW-------I 69

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + L+IV    L+         +V +      +   + R L+         E+    +S  
Sbjct: 70  IVLYIVAFFVLYSLFTALWPRIVQQSRDLAANAPVIIRELTIFFEQNQTIEVGDFVISLA 129

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                +    L  +   ++     +     L+  + ++  +I  F+       +     S
Sbjct: 130 PLEAQVIG--LIRDVAGWLSGNVPKIVFSALESVIYLLVYLIITFYLLLQAPQLKAWSRS 187

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L    +      +   + +V  +   G  I+ +   ++L     +  VP  + + V + +
Sbjct: 188 LIPAPYRREIGHLGYQIDRVFSAYIRGQLILIVIMSVLLYIPLSILQVPYALVIAVASGV 247

Query: 251 MAMIPGGAPISFTAVSIYLLIKG--------NIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           + ++P   P S   +++ + +          N+  A  L +   +   I D  + P ++G
Sbjct: 248 LEILPIIGPWSAAGIAMTVALFQPVTPFGLSNVALAVLLGIIYFVLRQIEDHFIIPNVMG 307

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             ++L      F ++ G    G  GLFI   + A+I ++       + +  E  S 
Sbjct: 308 PLVRLHPGVVIFAILAGGALAGAFGLFISIPIAAVIRILLSYIYRKLTDQPETPSD 363


>gi|241760550|ref|ZP_04758643.1| putative membrane protein [Neisseria flavescens SK114]
 gi|241319054|gb|EER55556.1| putative membrane protein [Neisseria flavescens SK114]
          Length = 356

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 60/337 (17%), Positives = 124/337 (36%), Gaps = 10/337 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I+   ++   +  LY L     P + A ++ +   P+       K       ++I     
Sbjct: 13  IIMACVIAAFIWLLYALGDVLTPFIVAAVLAYVLNPLVEWL-QLKRIRRAPASMIIMAFA 71

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           + + +  +L +    + +   L  ++  +       +  WL+ + G     +        
Sbjct: 72  LLVLLSLVLIIVPMLLNQFNNLAERLPQIVGFVQNKLLPWLNSVSG-----DYIQIDQES 126

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             +        L     ++IP    + G   +    ++  + + L++F  D    S  + 
Sbjct: 127 IIAWLQSHTDELSNTLKEWIPTLMRQSG-NVISGVSNLALLPLLLYYFLLDWKRWSSGIS 185

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L    F   + +IS  + +V+     G  ++ +  GLV G    L G+ S  A+G+I  
Sbjct: 186 KLVPRRFIETYTRISGNMDEVLGEFLRGQLMVMMIMGLVYGLGLMLVGLDSGFAIGMIAG 245

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGGPIKL 307
           I+  IP     +   ++    +         L +W    +  F+    + P +VG  I L
Sbjct: 246 ILVFIPYLGAFTGLLLATIAALLQYGSWQGLLMVWAVFGVGQFLESFFITPKIVGDRIGL 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                 F L+   + MG +G+  G  L A+  VI +E
Sbjct: 306 SPFWVIFSLMAFGQLMGFVGMLAGLPLAAVTLVILRE 342


>gi|269118863|ref|YP_003307040.1| hypothetical protein Sterm_0224 [Sebaldella termitidis ATCC 33386]
 gi|268612741|gb|ACZ07109.1| protein of unknown function UPF0118 [Sebaldella termitidis ATCC
           33386]
          Length = 345

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/316 (15%), Positives = 104/316 (32%), Gaps = 18/316 (5%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P + A +I +   P       K         +I    VM +FI  +L L    + +  
Sbjct: 41  LIPFILAFVITYVLEPAVEFLEKKLNFKRMSAFMIVYFVVMFVFIAMVLALIPEVVNQFN 100

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            ++S ++                          +K++ H           LK     +I 
Sbjct: 101 SMISFIINHQ----------------GEIQLKVSKYIEHSHINISEIVYKLKEWFFRYIF 144

Query: 151 RFASRFGMIFLDYCLSIIFMI-IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
              +  G+  +    SI+FM  I LF   +D  S+  +L              I R +  
Sbjct: 145 SLLNS-GISLIKAFFSIVFMTPIFLFLLMKDYRSLKMKLKLRILEADRRDIIIIMRNIDV 203

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
           V+     G  I     G ++   + + G+   +    I  +  +IP   P+     +   
Sbjct: 204 VLGKYVKGKLIDCFLVGTLVYIIFSILGLKFALLFSFIIGVTNLIPYVGPVIGAIPACLF 263

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            +  +      + +       +    L P++    +++  + T   L+ G    G++G  
Sbjct: 264 ALLQSFNIFIGVLIAIVFIQTLESVFLVPYITSKTVEIHEITTLLVLLIGGSLFGIIGAL 323

Query: 330 IGPVLMALIAVIWKES 345
           +   +  +I VI++  
Sbjct: 324 LAIPVYLVIKVIYEYY 339


>gi|168204576|ref|ZP_02630581.1| putative membrane protein [Clostridium perfringens E str. JGS1987]
 gi|170663763|gb|EDT16446.1| putative membrane protein [Clostridium perfringens E str. JGS1987]
          Length = 391

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/323 (13%), Positives = 99/323 (30%), Gaps = 6/323 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA------VIATVSVMCLFIVPLL 79
            +K     +  A ++               E S           +  TV+++ L      
Sbjct: 41  LVKPLILGIAIAFVLNIPMKFFERKLFRNLENSKKSWVRSAKRPLAITVTIIVLVGAISA 100

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            + +        +V        +       +++              + +     + + T
Sbjct: 101 IILFVVPQLTSSVVKLTESIPTYLKSFEVNMNNYADSTVLLSKVWDQVMNTWQEILKTVT 160

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            L      ++           +D+CL+ +  I  L    +    I + + +         
Sbjct: 161 HLFGGLASYLVGLTVDVTTAIIDFCLAFVLAIYMLSSKEKLICQIKKVMYAYLRGDIADK 220

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             +I +   +V     +G    A+  G +      +  +P    + V+    ++IP    
Sbjct: 221 ILEIGQTTNRVFSGFIIGQCTEALIIGTLCFLGMLVLRMPYAFLISVLVGTTSLIPILGA 280

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
              T  S +L+   N   A    ++      +    + P +VGG + L  L     ++ G
Sbjct: 281 FIGTIPSFFLIFIINPIKAFWFIVFIFCLQRVEGDLIYPRVVGGSVGLSSLWVMLAIMIG 340

Query: 320 VRTMGLLGLFIGPVLMALIAVIW 342
               G +G+ +G    A+I  ++
Sbjct: 341 GSAFGFIGMLVGVPTAAVIYCVF 363


>gi|315281657|ref|ZP_07870234.1| membrane protein YdbI [Listeria marthii FSL S4-120]
 gi|313614693|gb|EFR88260.1| membrane protein YdbI [Listeria marthii FSL S4-120]
          Length = 348

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/345 (15%), Positives = 115/345 (33%), Gaps = 25/345 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  ++ + LY L+     +L   I  F    + +  + +       +
Sbjct: 5   EKLKENDTARRVLVFILLGIVLYLLRSMIDLILLTFIFAFLVTRLENVILKRIRIPRKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V     + ++      + ++ +LV  +V    +  P    +     G      
Sbjct: 65  VIVLYSLVAIFLYIAIVHFLPILIDQISQLVDSLVKIYNN--PSDNTIVQWIVGFLKESN 122

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             K+L                 G+DFI    S  G + L + L++I  +    FF  +  
Sbjct: 123 IQKYLQ---------------AGVDFIIASLSGIGSVGLSFFLALILSL----FFSLEKE 163

Query: 183 SISQQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            ++              +K+     +              +IA+   ++   A +L   P
Sbjct: 164 RVTSFTGQFMTSKVGFIFKEAAFFGKKFVATFGVVLEAQLMIALVNTVITTIALYLMDFP 223

Query: 240 SHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             ++L ++  ++ +IP    I     + +     G   +   + +   I   I    L P
Sbjct: 224 QLLSLSIMVFVLGLIPVAGVIISCIPLVLIAYTVGGFQDVVYILITVVIVHAIETYILNP 283

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L+     LP   TF  L+      G+ GL +G  +   +  I +
Sbjct: 284 KLMSSKTNLPVFYTFIILIFSETFFGVWGLIVGIPVFVFLLDILE 328


>gi|315498797|ref|YP_004087601.1| hypothetical protein Astex_1784 [Asticcacaulis excentricus CB 48]
 gi|315416809|gb|ADU13450.1| protein of unknown function UPF0118 [Asticcacaulis excentricus CB
           48]
          Length = 352

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 79/246 (32%), Gaps = 9/246 (3%)

Query: 96  VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASR 155
           V   N     +P   + +   + ASE     L    +L   +   L             +
Sbjct: 91  VRQTNNLSRELPEAWAQLQERLRASEAGATVLDQINNLGQQASGVL---------SLVPK 141

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
                     +++ +++A  F      S    +  L         +    +  K +R   
Sbjct: 142 IAGEIASSIANLVVVVVAGIFMAMHPRSYRDGVVRLFPKSQKDRVRDGLNLSGKALRLWL 201

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNI 275
           LG     +  G +      +AGVPS  ALG+++ +   +P   P+      + L    N+
Sbjct: 202 LGQLFSMVLVGSLTAIGLSIAGVPSAGALGLMSGLAQFVPIVGPVVSAGPGLLLAASENM 261

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
                  +       +    + P +      +P + T F ++G    +G LG+     L 
Sbjct: 262 TTFIAALVIYVGVSQLESNIITPMVQKHVAAVPTVITLFAVLGFGSLLGPLGVLFATPLT 321

Query: 336 ALIAVI 341
            +   +
Sbjct: 322 VVAHTL 327


>gi|167464196|ref|ZP_02329285.1| hypothetical protein Plarl_16844 [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322381973|ref|ZP_08055921.1| hypothetical protein PL1_1482 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154037|gb|EFX46367.1| hypothetical protein PL1_1482 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 369

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 81/216 (37%), Gaps = 1/216 (0%)

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
           GI     + +    +  ++ + +  + I L++  ++   I   + +     +    ++  
Sbjct: 150 GITAASNYVTGLVSVVTNFVMIVATVPIILYYMLKESDHIPDSILAAIPQKYRRDGEQTL 209

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
             +   +    +G  II    G++L   + L G+P  + L V++ ++ +IP    I    
Sbjct: 210 EEIDSALSGFIVGRVIITGLLGVMLYIGFLLIGLPYSLLLTVVSTVLNLIPYIGSILGAI 269

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             + +    +   A    +   I   I    L P + G  + +  L T   L+      G
Sbjct: 270 PVLIVAFIHSPSMALWSMIVVIIAQQIESNLLSPHIYGKRLDIHPLTTIVLLLVAGDIGG 329

Query: 325 LLGLFIG-PVLMALIAVIWKESIMAIKENKEKISSN 359
           +LG+ +  P  M    +I +   +      E+I+  
Sbjct: 330 ILGVILAIPGYMVAKIIIVRAYHLFFAGKVEEIADQ 365


>gi|325283454|ref|YP_004255995.1| hypothetical protein Deipr_1228 [Deinococcus proteolyticus MRP]
 gi|324315263|gb|ADY26378.1| protein of unknown function UPF0118 [Deinococcus proteolyticus MRP]
          Length = 469

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/351 (14%), Positives = 123/351 (35%), Gaps = 22/351 (6%)

Query: 14  WMIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            + +  ++++LYF          V  A+++     P+   F         F A+ + + +
Sbjct: 15  ALAVLGVILALYFFSQVSASLMAVTLAVLLASALNPVVLFFERWMP--RGFAALFSVLLL 72

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
                  L      G L M  +V ++   N  G                 +L  ++    
Sbjct: 73  -------LGGFIGLGALAMPPIVEQLGSVNLPGTVGEAQ-------AQLEKLAQRYPQLS 118

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
             ++       +    +++   A       +     +   +I L        S +  +  
Sbjct: 119 PLVQPERVEQFQAQLTEWLSASAGSLLDWAVKAVGLVFTGLITLVMVILALSSPAPLIGG 178

Query: 191 LGEHLFPAYWKKISRIVPKVI---RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +     P +  K +R + +++    +       I +  G ++ +  +  GV + +  GV+
Sbjct: 179 VLGAFPPQHRTKAARALAQILVQMGAWGRATLTIMLATGAIMAAGLYFLGVKNWLVFGVL 238

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           +A+  +IP   PI  + + +      +   A  + ++  +   +    L PFL+GG  ++
Sbjct: 239 SALGELIPNIGPIVSSGLPVLFTAAEDPQKALYVAIFALVFQQLEGAVLAPFLLGGAGRM 298

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             L    G++      G++G F+    + +I  +++   +A     E    
Sbjct: 299 HPLSVTVGVLLFGSVFGIVGAFLTVPFLIVIKAVYEHFYLAGNPRPELTDE 349


>gi|240173428|ref|ZP_04752086.1| transmembrane protein [Mycobacterium kansasii ATCC 12478]
          Length = 384

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 57/366 (15%), Positives = 125/366 (34%), Gaps = 24/366 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYF------LKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
            ++       W ++ I   +L        L+    PVL ALI+     P+      ++  
Sbjct: 12  PLVRKTAAWSWRLLVIFAAALAVIWVISKLEIIVVPVLLALILSALLVPVVDWLDLRRVP 71

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                  +  +    +    L F+    ++ + +LV +V  +        RWL + P  +
Sbjct: 72  R-GAAVSLVLLGGFAILGGILAFVISQFIVGLPDLVKQVERSIDSSR---RWLIEGPAHL 127

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
              ++     +  ++L+              +   A        +     + ++  L FF
Sbjct: 128 RREQIDNAGNAAIEALRNNQAK---------LTSGAISTAATITELLTGAVLVLFTLIFF 178

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
              G +I Q +  +          +  R     +        ++A+ + + +G+   + G
Sbjct: 179 LYGGRNIWQYVVKIVPVPARDRVLEAGRAGYSSLIGYVRATFLVALTDAIGVGTGLAIMG 238

Query: 238 VPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           VP  + L  +  + A IP  GA IS     +  L+   +  A            +    L
Sbjct: 239 VPLALPLASLVFLGAFIPLLGALISGLLAVVVALLAKGLVYALITLGLLIAVNQLEAHLL 298

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI----AVIWKESIMAIKEN 352
           +P ++G  + +  L     +  G    G++G  +    +A +     V+  +   A  E 
Sbjct: 299 QPLVMGRAVSIHPLAVVLAISTGGVLAGIVGALLAVPTVAFLNNAMQVLLAKDPAAAAEQ 358

Query: 353 KEKISS 358
            E+ S+
Sbjct: 359 PEEPST 364


>gi|312887454|ref|ZP_07747053.1| protein of unknown function UPF0118 [Mucilaginibacter paludis DSM
           18603]
 gi|311300094|gb|EFQ77164.1| protein of unknown function UPF0118 [Mucilaginibacter paludis DSM
           18603]
          Length = 368

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/330 (15%), Positives = 120/330 (36%), Gaps = 20/330 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + ++   L+ L+    P   AL+I     PI +  +  K   +  +A++ ++ +  + + 
Sbjct: 19  LILLTYILFTLQSILVPFAFALVIAILLNPICNLLMRIKLPKA--VAILTSILIAYIIVG 76

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            ++F     ML   +    + +   H                        L +   + I 
Sbjct: 77  GIVFFLSMQMLHFGDTFPALQVKFAH----------------IFHDLQLWLQNSFHISIN 120

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +  L    ++             L+    +  + + +F F      +   L  +     
Sbjct: 121 KQNELINEALNNSKALLGATLGTALNTLSVLFLIPVYIFMFLFYKTLLLNFLFEVFAEEN 180

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
             + + I       I+S  +G+ + A    ++      + GV   + +GV+ AI+ M+P 
Sbjct: 181 SQHVRVILNQTKTAIQSYMVGLLLEAFIVAILNSVGLLILGVNYAILIGVMGAILNMLPY 240

Query: 257 GAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
              I   A+ + +  + K        + +   I  FI +  L P +V   +++  L +  
Sbjct: 241 IGGIIAIAIPLLIATVTKDGYSTQIGIVISFMIVQFIDNNILVPRIVSSKVQINALVSIL 300

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            ++ G    G+ G+F+    +A++ +I+  
Sbjct: 301 VVLLGGALWGVSGMFLSIPFVAILKIIFDR 330


>gi|213018765|ref|ZP_03334573.1| hypothetical protein C1A_538 [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212995716|gb|EEB56356.1| hypothetical protein C1A_538 [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 225

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 78/197 (39%), Gaps = 2/197 (1%)

Query: 159 IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
             +     I   ++  F+  RD  +I ++ + L   L+          V  +I +   G 
Sbjct: 24  NLIYMVSLIAITLVVFFYVLRDWPAIVEKANKLIPILYREKAAGYFSKVDFIISNYLKGQ 83

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG--NIF 276
             + I   +       + G+   VA+G+++  +  IP   P+ +T +     I      F
Sbjct: 84  LNVCIVMMIFYSVGLSIIGLKHSVAIGILSGTLTFIPYIGPLLYTIIGFLSAITQFSGWF 143

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            +T + L  ++   I    L P L+G  + +       G+V      G +G+     ++A
Sbjct: 144 ESTAVLLLFSVGQLIDSSILVPLLIGKKVHIHPTIIILGVVICTSYFGFIGILFFIPIIA 203

Query: 337 LIAVIWKESIMAIKENK 353
           + +V+ + ++    E++
Sbjct: 204 MFSVLVEYAVNKYFESE 220


>gi|171911714|ref|ZP_02927184.1| hypothetical protein VspiD_11080 [Verrucomicrobium spinosum DSM
           4136]
          Length = 633

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/368 (14%), Positives = 111/368 (30%), Gaps = 32/368 (8%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M     +    +R+    +++ +LYF +    P+  + ++ F   P+       +     
Sbjct: 1   MDAQQRSYLVFLRFFSALLLVAALYFAQEVLVPLALSALLAFMINPLVKLLCRCRLPR-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               ++ V V  L    +  +F+    E+  L + +     +       + +   G   +
Sbjct: 59  ---AMSVVIVTMLVFTLMGCVFWMVGKELHHLANSLPNYRHNIQERVSTVRNASEGGTIA 115

Query: 121 ELW-----------------TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY 163
            L                   K +S P      +     +      P          L+ 
Sbjct: 116 RLRTMVADISTSALDVSAGRQKQVSTPAVQPPAAPDNAASAPQPAPPPVEGGMASKILNA 175

Query: 164 CLSII--------FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
            LS +         +I+ + F       IS ++  L          +    +   I    
Sbjct: 176 SLSFLANGLGVAAVVIVFVIFMLLRQEDISHRIVGLAGFSRLTTTTRAMDEIGGRISRYL 235

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKG 273
           L +  +    GL+L       G+P  +  GV+ A+   IP  G   ++   + + L +  
Sbjct: 236 LMLATVNSLYGLMLAIGLAFIGLPYVLLWGVLAALFRFIPYIGPWIVAVLPIGLSLAVFD 295

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
                  +         + +  L P L G  + +        +       G LGL +   
Sbjct: 296 GWTQPLMVAGLIIGLELLTNMVLEPLLYGHSVGVSDFALLVAITFWTWLWGGLGLVLATP 355

Query: 334 LMALIAVI 341
           L   I VI
Sbjct: 356 LTVCIVVI 363


>gi|169344461|ref|ZP_02865430.1| putative membrane protein [Clostridium perfringens C str. JGS1495]
 gi|169297381|gb|EDS79490.1| putative membrane protein [Clostridium perfringens C str. JGS1495]
          Length = 391

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/323 (13%), Positives = 99/323 (30%), Gaps = 6/323 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA------VIATVSVMCLFIVPLL 79
            +K     +  A ++               E S           +  TV+++ L      
Sbjct: 41  LVKPLILGIAIAFVLNIPMKFFERKLFRNLENSKKSWVRSAKRPLAITVTIIVLVGAISA 100

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            + +        +V        +       +++              + +     + + T
Sbjct: 101 IILFVVPQLTSSVVKLTESIPTYLKSFEVNMNNYADSTVLLSKVWDQVMNTWQEILKTVT 160

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            L      ++           +D+CL+ +  I  L    +    I + + +         
Sbjct: 161 HLFGGIASYLVGLTVDVTTAIIDFCLAFVLAIYMLSSKEKLICQIKKVMYAYLRGDIADK 220

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             +I +   +V     +G    A+  G +      +  +P    + V+    ++IP    
Sbjct: 221 ILEIGQTTNRVFSGFIIGQCTEALIIGTLCFLGMLVLRMPYAFLISVLVGTTSLIPILGA 280

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
              T  S +L+   N   A    ++      +    + P +VGG + L  L     ++ G
Sbjct: 281 FIGTIPSFFLIFIINPIKAFWFIVFIFCLQRVEGDLIYPRVVGGSVGLSSLWVMLAIMIG 340

Query: 320 VRTMGLLGLFIGPVLMALIAVIW 342
               G +G+ +G    A+I  ++
Sbjct: 341 GSAFGFIGMLVGVPTAAVIYCVF 363


>gi|222053923|ref|YP_002536285.1| protein of unknown function UPF0118 [Geobacter sp. FRC-32]
 gi|221563212|gb|ACM19184.1| protein of unknown function UPF0118 [Geobacter sp. FRC-32]
          Length = 348

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/339 (12%), Positives = 112/339 (33%), Gaps = 13/339 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS-TFLAV 64
           ++ + +   +I   I+ + Y L+   +  L + II +   P   +   ++   +   + +
Sbjct: 7   VSSRAVTAILITAAIVAAGYALRHTVSCFLLSFIIAYLLDPAVVALERRRIPRTYGIIIL 66

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
             T++++ +F +  +  F     E   L+  +    Q G  +           + +E W 
Sbjct: 67  YLTLALISVFCIIYILPFTTLAWE--SLLRDLPGYVQKGKDLILGGKGELQPAFGNEEWL 124

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +    +        L                        ++I   I +FF       I
Sbjct: 125 WLMDTIWTNMDKLYEKLSAGVYAAAANVVFN--------LFNLILSPILVFFMLYYKHQI 176

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             +  S          + I R +   +     G  I+++   ++   A +L G+   +  
Sbjct: 177 IDECVSWLPAERSETIRAIGREINASVGGYIRGQLIVSVIVAVLSTIALFLLGIDYAILN 236

Query: 245 GVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLVG 302
           G+   + +++P  G  ++      +  ++                + F+    ++P +  
Sbjct: 237 GIFAGLASILPFIGVILATLPPLFFAYVEFQSGVVLIKVAASFAVIYFLEGYVVKPLVFQ 296

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             + L  L T   ++     +G  G+ +   L A   ++
Sbjct: 297 ESMDLNPLLTIIVVMAFGELLGFWGIILAIPLAAAFKIV 335


>gi|255281982|ref|ZP_05346537.1| putative membrane protein [Bryantella formatexigens DSM 14469]
 gi|255267655|gb|EET60860.1| putative membrane protein [Bryantella formatexigens DSM 14469]
          Length = 413

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 83/259 (32%), Gaps = 12/259 (4%)

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           LA     +++ L I  ++   Y  +  +   +  V+      +     L +     +++ 
Sbjct: 121 LAFATLAAIIVLVIGLVVPQLYSCIQLILSTLPGVMEDLVEAVEKLDVLPEDVMNAFSNV 180

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            W   +       +        +GI  +           +   +++   II   +     
Sbjct: 181 DWQSRIGELVKGLL--------SGIGNVMDMVISVVSSAVSRLVTLFMAIIFAIYLLLGK 232

Query: 182 FSISQQLDSLGEHLFPAYWKK----ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             +  Q   L          +       ++    R+  +G    A+  G++      L  
Sbjct: 233 EKLGSQAKRLMRRYMKKRPYETCLHFFSVMNDCFRNYIVGQCTEAVILGVLCTVGMLLMR 292

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           +P    +G + A  A+IP         V  ++++  +   A    ++ A+   +    + 
Sbjct: 293 LPYAAMVGALVAFTALIPVAGAYIGAGVGAFMILTVSPAKAIIFLIFIAVLQQVEGNLIY 352

Query: 298 PFLVGGPIKLPFLPTFFGL 316
           P +VG  I LP L     +
Sbjct: 353 PRVVGSSIGLPALWVLAAV 371


>gi|225568845|ref|ZP_03777870.1| hypothetical protein CLOHYLEM_04924 [Clostridium hylemonae DSM
           15053]
 gi|225162344|gb|EEG74963.1| hypothetical protein CLOHYLEM_04924 [Clostridium hylemonae DSM
           15053]
          Length = 381

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 116/338 (34%), Gaps = 5/338 (1%)

Query: 10  GIMRWMIMFIILVSLYF-LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
            +   ++  ++ + L   L  FF P +    I F + P+ +    + +      + I  +
Sbjct: 21  SLAFSLLGTVLFIFLGVRLLAFFMPFVIGWFIAFIASPVVNWLERRLKIVKKLGSAIIII 80

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW--ASELWTKH 126
            V+   +  L F       E+  LV  +    +        +     G++    +     
Sbjct: 81  GVLAGLVFLLYFAGSRLWREIVSLVQNMPDLYKQLESGLSDIGKTLDGVFTILPKGIQNG 140

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                S    +   L     +     A  F        ++ I  +I+ +FF  D  ++  
Sbjct: 141 WHAIVSNLDSTVGDLMGRISEPTVTAAGNFAKKIPSVLIATIVTVISAYFFIADREAVIA 200

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
               +           +   +   +   F     I +    +L   + L GV   + L +
Sbjct: 201 WSKKIAPDPVVRRMSMVIDNMKYAVGGYFKAQMKIMVVVFALLLVGFLLMGVHFQILLAL 260

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           + A +  +P  G   +    ++Y  + GN   A  L    A+   +V + ++P LVG  +
Sbjct: 261 LIAFLDFLPFFGTGTALIPWALYKFMVGNYRLAIALMALYAVTQ-LVRQLIQPKLVGDSM 319

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L  L T   L  G +   +LG+     +  ++  +++
Sbjct: 320 GLNPLVTLVLLYVGYKVGSVLGMIFAVPVGMIVINLFQ 357


>gi|168214314|ref|ZP_02639939.1| putative membrane protein [Clostridium perfringens CPE str. F4969]
 gi|170714173|gb|EDT26355.1| putative membrane protein [Clostridium perfringens CPE str. F4969]
          Length = 391

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/326 (14%), Positives = 99/326 (30%), Gaps = 12/326 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS--TFLAVIATVSVMCLFIVPLLFLFY 83
            +K     +  A ++               E S      +    +++    IV +  +  
Sbjct: 41  LVKPLILGIAIAFVLNIPMKFFERKLFRNLENSKKSWVRSAKRPLAITVTIIVLVGAISA 100

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             +  + +L S VV   +    +P +L      M      T  LS      + +   +  
Sbjct: 101 IILFVVPQLTSSVVKLTES---IPTYLKSFEVNMNNYADSTLLLSKVWDQVMNAWQEILK 157

Query: 144 NGIDFIPRFASRFGMIFLD---YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
                    AS    + +D     +      +   +       +  Q+  +         
Sbjct: 158 TVTHLFGGLASYLVGLTVDVTTAIIDFFLAFVLAIYMLSSKEKLICQIKKVMYAYLRGDI 217

Query: 201 KKISRIVPKVIRSTFLGMTII----AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                 + +     F G  I     A+  G +      +  +P    + V+    ++IP 
Sbjct: 218 ADKILEIGQTTNRVFSGFIIGQCTEALIIGTLCFLGMLVLRMPYAFLISVLVGTTSLIPI 277

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
                 T  S +L+   N   A    ++      +    + P +VGG + L  L     +
Sbjct: 278 LGAFIGTIPSFFLIFIINPIKAFWFIVFIFCLQRVEGDLIYPRVVGGSVGLSSLWVMLAI 337

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIW 342
           + G    G +G+ +G    A+I  ++
Sbjct: 338 MIGGSAFGFIGMLVGVPTAAVIYCVF 363


>gi|116627830|ref|YP_820449.1| permease [Streptococcus thermophilus LMD-9]
 gi|22218143|gb|AAM94594.1|AF448502_16 epsX [Streptococcus thermophilus]
 gi|116101107|gb|ABJ66253.1| Predicted permease [Streptococcus thermophilus LMD-9]
 gi|312278395|gb|ADQ63052.1| Predicted permease [Streptococcus thermophilus ND03]
          Length = 378

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 107/292 (36%), Gaps = 4/292 (1%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELW 123
           ++ +       +   ++ +  + ++ + ++ ++  ++  I  +  WL          +  
Sbjct: 79  VSLLLAFATIGLIFTWVVFTVLPDLIDSINTLISQDRSAINNLINWLLKNKSLQKIIQDL 138

Query: 124 TKHLSHPQSLKILSETFLKT--NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                  + +   S   L+   NG+       +      ++  +SI+F    L    + G
Sbjct: 139 GGVTQVRELINSYSAQLLQQIMNGLTNFLTSLTSLPSTLINLFISIVFSCYVLVGKEKLG 198

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +++ +D          +  +  I+    R+ F+  +I A   G +      +   P  
Sbjct: 199 SQVNRLVDVYLGRY-GKTFHYVVAILNNRFRNFFVYQSIEACILGTLCYIGMRIFNFPYA 257

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             + ++    AMIP         +   L++  ++  A     +  I        + P++V
Sbjct: 258 ATISILIGFSAMIPVLGAYIGVTIGTILIMTHSVTLALLFVAYVVILQQFEGNLIYPYVV 317

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           GG   LP +     +  G    G+LG+ +   + A +  I K++++  ++ K
Sbjct: 318 GGSTGLPVVWVILAITIGSALGGILGMLVSVPVAATLYQIVKDNVVTREKAK 369


>gi|226304691|ref|YP_002764649.1| hypothetical protein RER_12020 [Rhodococcus erythropolis PR4]
 gi|226183806|dbj|BAH31910.1| hypothetical membrane protein [Rhodococcus erythropolis PR4]
          Length = 364

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/300 (13%), Positives = 93/300 (31%), Gaps = 16/300 (5%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           +G    ++ AL +     P+      +          +  + +  +  + L+      + 
Sbjct: 55  RGMLILIVVALFLAVGIEPMIVWLERR-HFRRWIAVTVVLLGIAVMLALFLVAAITPLVE 113

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           + ++  S       H       ++D+       +  T  L    S               
Sbjct: 114 QGRQFASHAPELLTHIRDRYPIVNDLDEKYHLEQHLTTQLDGSGSA-------------- 159

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            +       G            + +   +F  D   I   L  L  H        I   +
Sbjct: 160 -LATGLLGAGRAVFSAVADAGIVAVLTTYFLIDYPRIRTNLYRLVPHSRRPRAIAIGDQI 218

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
              +    LG  +I++   +   +   +  VP  + L ++ A++ +IP         +  
Sbjct: 219 LAGVGGYVLGNVLISVITAVCTFAWLLIFDVPYPLILALLVALLDLIPIVGSTIAGVIVA 278

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            + +  ++  A     +      + D  L P ++G  + +P L T   ++ G   +G++G
Sbjct: 279 LVSLTVSVPTALATVAFFIALRLLEDYLLVPKIIGKTVAVPALVTVVAVLLGGALLGIVG 338


>gi|160935120|ref|ZP_02082503.1| hypothetical protein CLOBOL_00015 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441851|gb|EDP19548.1| hypothetical protein CLOBOL_00015 [Clostridium bolteae ATCC
           BAA-613]
          Length = 365

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/346 (14%), Positives = 118/346 (34%), Gaps = 11/346 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKEES 58
           +       I+ ++   II V  Y     L     P ++A+ I     P  S      +  
Sbjct: 12  DIQKRRTFIISFIYFGIIGVLCYIGLKKLLPILIPFMAAMAIAAMLEPAVSLLDRHMKGG 71

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV--VLANQHGIPVPRWLSDIPGG 116
               A +  +      +  +       +  ++E   K+  + +      +  + S +   
Sbjct: 72  KGAAAAVVLLVFYGSILTIMCVSGSQILSSIQEQAKKLPGIYSQTIEPGLSHFFSLLENS 131

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
                +    L       + + +   ++G   +  + +          L  +  +IA FF
Sbjct: 132 FPGHSIHISALGQSLERFMENASVGISSG---LLGWGASAISGIPALVLDFVIAVIASFF 188

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
              +       L             ++   + KV         ++ +     L   + + 
Sbjct: 189 LTGNYRETLDFLLYQIPDDRRQMLLQVLLHIRKVACRLLRAYALLMLLTFTELYIGFLVL 248

Query: 237 GVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
           G+P+   L  IT+++ ++P  G        ++     G+   A  L     + + +V +T
Sbjct: 249 GIPAGFTLACITSLVDILPVLGTGTVLLPWALIAWTTGSGSLAMGLVCLY-LLIAVVRQT 307

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           L P ++G  + L  + T   +  G + +GL G+F+ P+   ++A +
Sbjct: 308 LEPKIIGHQMGLSPIATLLCIFAGGKLLGLTGIFLFPIAATVLAEL 353


>gi|330991351|ref|ZP_08315302.1| UPF0118 inner membrane protein yhhT [Gluconacetobacter sp. SXCC-1]
 gi|329761370|gb|EGG77863.1| UPF0118 inner membrane protein yhhT [Gluconacetobacter sp. SXCC-1]
          Length = 414

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 55/352 (15%), Positives = 120/352 (34%), Gaps = 11/352 (3%)

Query: 1   MRETMLNPQGIMRWMI-MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           MR + ++ +     ++ +  +  +LYF      P++ AL++             +     
Sbjct: 23  MRHSRIDTRTACLLLLSVLAVFYTLYFASAIILPMILALVVNLLLSTPLRFLHMRLRLPK 82

Query: 60  TFLAVIATVSVMCLFI-------VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD 112
              A+   + V  +         VP           +  L  ++         +      
Sbjct: 83  PLAALCLILCVFGIVGAVGTAISVPATGWLERAPDALNTLRERLAFLRGPFQLLTSASER 142

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
           I   M  +     H     +   +      + G++ + RF+S   +    +      MI+
Sbjct: 143 IHNFMTIAGGHVDHTPAETADGHIIVITSPSGGVEGLDRFSSSILLGTQAFMGQFFTMIL 202

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
            LFF    G S+ ++   +           +I+  + + +      +TII    GLV  +
Sbjct: 203 MLFFLLAQGDSLLRRFVEIMPTFADKRRAVQIAYQIERNVSQYLATITIINSLVGLVNMT 262

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIEL 289
             WL G+P+ +  GV+  ++  IP   P+        + L +  + + A           
Sbjct: 263 QCWLLGMPNPLLWGVVAFLLNYIPIIGPMMGIIIYFLVGLFVYPSAWQALLPPAIYLCIH 322

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
               +T+ P ++     L  +     L+      G+ G F+   L+A+  +I
Sbjct: 323 LTEGETITPMVLARRFTLNPVLVMASLMFWDWLWGIFGAFLSVPLLAVFKII 374


>gi|182415703|ref|YP_001820769.1| hypothetical protein Oter_3895 [Opitutus terrae PB90-1]
 gi|177842917|gb|ACB77169.1| protein of unknown function UPF0118 [Opitutus terrae PB90-1]
          Length = 340

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 106/332 (31%), Gaps = 20/332 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +  +   L+ +          +++      +      K    + +  ++  V++M + + 
Sbjct: 20  LVALAAVLWLIADAIVVAFGGIVLASVLLSLSGPLSRKTHLGARWS-LLIVVALMLVAVA 78

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L +LF                 N+           +P  +   E W   L    + +++
Sbjct: 79  ALSWLF----------------GNEIVTQFGELQRQLPEALHKVEQW---LGQSPAGRMV 119

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            ++  +  G       A  F         +++ ++    +F  D          L     
Sbjct: 120 VDSVRQVGGNTEALSQAGAFVGSVFGAAANLLLVLFLGVYFAADPQLYRDGALRLVPPRR 179

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               ++        +R   +   I  +  G++ G A  L GVP  ++LGV+  ++  +P 
Sbjct: 180 RPQLRRALDDAGVALRKWLVAQAIAMLAVGVLTGVALGLIGVPLALSLGVLAGLLEFVPV 239

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             PI      + L             L       I    + P +    +KLP +     +
Sbjct: 240 IGPIVAAVPGLLLAFSHGPNTVLYAALVYVAVQQIESNVITPLVQRWAVKLPPVLGLLAI 299

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           V     +G+ G+     L  ++ V+ K+  + 
Sbjct: 300 VAFGLLLGVPGVIFAMPLAVVVMVLVKDLYVE 331


>gi|116492928|ref|YP_804663.1| permease [Pediococcus pentosaceus ATCC 25745]
 gi|116103078|gb|ABJ68221.1| Predicted permease [Pediococcus pentosaceus ATCC 25745]
          Length = 350

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/349 (15%), Positives = 119/349 (34%), Gaps = 17/349 (4%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + +  W  +  +++ ++ L+ F + +L  +I  F S           + S     +I  
Sbjct: 10  KKSVQLWATLVALILIIFLLRDFMSQILLVVIFSFVSHVGIQKIRKYTKVSQPIGTIIFY 69

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + ++        F       ++K + S +  A         ++  I   +          
Sbjct: 70  IVLLAFAGFVFSFTASMIYDQLKGIPSLIKHAIDSDTFSNHYVQTILTEI---------- 119

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            +  S  +    ++  +G++ + R       + +   LS++F +      Y         
Sbjct: 120 -NRNSQAVKGSQYIAMSGLNQLGRIGIAAEHVIIALFLSMVFNLT-----YNHLREFGHA 173

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      +       + R    ++ +      +I I    ++    W+ GVP  + + +I
Sbjct: 174 ILKSKYDIMFGNVYYLLRKYVVILGTVIETQLVICIINTGLMVIGLWIIGVPKLLLMAII 233

Query: 248 TAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             ++ ++P  G  IS   +SI       I +   +     +  F     L P L+ G   
Sbjct: 234 VFVLGLVPVAGVLISLIPLSIVAFSANGIISIAEVLCLVILIHFFESYFLHPRLMAGATD 293

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           LP   TF  L+ G + +G  GL +G   +A    +    +        K
Sbjct: 294 LPVFVTFITLIIGAKMLGTWGLIVGIPTVAFFIDLLGIQLKQHHPRNPK 342


>gi|18309702|ref|NP_561636.1| hypothetical protein CPE0720 [Clostridium perfringens str. 13]
 gi|168209902|ref|ZP_02635527.1| putative membrane protein [Clostridium perfringens B str. ATCC
           3626]
 gi|18144379|dbj|BAB80426.1| conserved hypothetical protein [Clostridium perfringens str. 13]
 gi|170712033|gb|EDT24215.1| putative membrane protein [Clostridium perfringens B str. ATCC
           3626]
          Length = 391

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/323 (12%), Positives = 99/323 (30%), Gaps = 6/323 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA------VIATVSVMCLFIVPLL 79
            +K     +  A ++               E S           +  TV+++ L      
Sbjct: 41  LVKPLILGIAIAFVLNIPMKFFERKLFRNLENSKKSWVRSAKRPLAITVTIIVLVGAISA 100

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            + +        +V        +       +++              + +     + + T
Sbjct: 101 IILFVVPQLTSSVVKLTESIPTYLKSFEVNMNNYADSTVLLSKVWDQVMNTWQEILKTVT 160

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            L      ++           +D+CL+ +  I  L    +    I + + +         
Sbjct: 161 HLFGGIASYLVGLTVDVTTAIIDFCLAFVLAIYMLSSKEKLICQIKKVMYAYLRGDIADK 220

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             ++ +   +V     +G    A+  G +      +  +P    + V+    ++IP    
Sbjct: 221 ILEVGQTTNRVFSGFIIGQCTEALIIGTLCFLGMLVLRMPYAFLISVLVGTTSLIPILGA 280

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
              T  S +L+   N   A    ++      +    + P +VGG + L  L     ++ G
Sbjct: 281 FIGTIPSFFLIFIINPIKAFWFIVFIFCLQRVEGDLIYPRVVGGSVGLSSLWVMLAIMIG 340

Query: 320 VRTMGLLGLFIGPVLMALIAVIW 342
               G +G+ +G    A+I  ++
Sbjct: 341 GSAFGFIGMLVGVPTAAVIYCVF 363


>gi|153939240|ref|YP_001392990.1| sporulation integral membrane protein YtvI [Clostridium botulinum F
           str. Langeland]
 gi|152935136|gb|ABS40634.1| sporulation integral membrane protein YtvI [Clostridium botulinum F
           str. Langeland]
 gi|295320965|gb|ADG01343.1| sporulation integral membrane protein YtvI [Clostridium botulinum F
           str. 230613]
          Length = 351

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/333 (13%), Positives = 114/333 (34%), Gaps = 26/333 (7%)

Query: 15  MIMFIILVSLYFL-----KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           +I+F I+ ++ FL       +  P + A +         +  I K +  ++  + I T+ 
Sbjct: 11  LILFFIIYTISFLIFFKTLPYTLPFVLAFLFALVLKKPANYLIKKLKIKNSLASFIVTLI 70

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              + I  L +     + E+ +                          +   ++  +L+ 
Sbjct: 71  FFSIIITLLFWGINLLVNEVIDFGRNAQAYLYSHEEE--------ISNYVDNIYRYYLNL 122

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY----------CLSIIFMIIALFFFYR 179
           P S+    E  +  +            G I   +           + I+F +++ +FF +
Sbjct: 123 PPSIIDSIEKTIGNSFSKISNIIVFITGKIVSSFIGLLTSIPYILMLILFTLLSTYFFTK 182

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D    + ++  +  +   + +  I     K++    L    +           +++  + 
Sbjct: 183 DITKHNNKISKIIFNEHSSKFSHIYLESKKMLNGYILSYLTLIGITFFETLIIFFIFNIK 242

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
             +   +  AI   +P  G    +  ++ IY+L+  N      L +     +  + + L 
Sbjct: 243 YSIMFSITAAIADFLPILGIGTIYVPLALIYILVYKNYVVGIGLLI-SYAAVSTIRQILE 301

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           P L+   + L  +     +  G++  G+ G+F 
Sbjct: 302 PKLLSSSLGLHPISILAAIFIGLKANGISGMFF 334


>gi|120599132|ref|YP_963706.1| hypothetical protein Sputw3181_2328 [Shewanella sp. W3-18-1]
 gi|120559225|gb|ABM25152.1| protein of unknown function UPF0118 [Shewanella sp. W3-18-1]
          Length = 361

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 79/224 (35%), Gaps = 6/224 (2%)

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII---ALFFFYRDGFS 183
             +P+ L ++     K      +   A +         + +++ I+    +FFF +D   
Sbjct: 124 FINPEQLNVMVAELKKMLDTQHVLDIAKQIIGYSASLLVLMVYAILVPLLVFFFLKDKDQ 183

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + +              +++   + + I +   G  I  +  G+     +   G+     
Sbjct: 184 LIRGSKRFFP-ANRQLARQVWFEMNQQIFNYIRGKVIEIVIVGVASYIFFAFMGLRYSAL 242

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLV 301
           LGV+T +  +IP  GA +    +++    +    +     + G   +  +D   L P L 
Sbjct: 243 LGVLTGLSVLIPYVGATLVTLPITLVAFFQWGFTSEFGYLMLGYGIIQALDGNLLVPILF 302

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
              + L  +     ++      G+ G+F    L +L+  +    
Sbjct: 303 SDAVDLHPVIIIAAVLVFGGLWGVWGVFFAIPLASLVKAVINAW 346


>gi|291515855|emb|CBK65065.1| FAD synthase [Alistipes shahii WAL 8301]
          Length = 490

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 55/351 (15%), Positives = 120/351 (34%), Gaps = 14/351 (3%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS---KKEESSTFLAVIATVSVMCLFIVP 77
           L  +++       +L + ++     P+         K  +   +LA +AT+ V+ + +  
Sbjct: 22  LFLVWYFSSIVVYILVSAVLAVMGNPLVKFLSGLHFKGWQVPRWLAALATLVVIWVVLAT 81

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           L  LF   +       + V  A   G                  L     S    L    
Sbjct: 82  LCSLFVPLVFNKINQFAHVDFAAVVGSIGEPIARMQHDLQALFSLPESTFSLSDELTAAL 141

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              +  N ++ I           L   ++I  +    FFF ++       + S+    + 
Sbjct: 142 RQIIDINSLNTIFSSVINL---VLSSVIAIFSVSFITFFFLKEEGLFYAMVTSVFPEHYH 198

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH--VALGVITAIMAMIP 255
               +    V  ++   F G+   ++   + +       G+ +     +G+I  +M ++P
Sbjct: 199 GNITRALDSVTVLLARYFTGILSESLLLTIAVTLVMMAFGMKAADAGFIGLIMGVMNVVP 258

Query: 256 GGAPISFTAVSIYLLI----KGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGGPIKLPF 309
              P+    VS+++ I    +G     T   + G++ +   + D  L+P L    +K   
Sbjct: 259 YAGPLIGGVVSVFVGIVSPIEGMSVGHTAFVIAGSLLILKGMDDFILQPTLYSERVKAHP 318

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           L  F  ++      G+LG+ +      ++ V  KE     +  ++    N 
Sbjct: 319 LEIFLVILIAGSLAGILGMLLAIPSYTVLRVFAKEFFSQFRLVRKLNRKNL 369


>gi|167755466|ref|ZP_02427593.1| hypothetical protein CLORAM_00980 [Clostridium ramosum DSM 1402]
 gi|167704405|gb|EDS18984.1| hypothetical protein CLORAM_00980 [Clostridium ramosum DSM 1402]
          Length = 378

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/324 (13%), Positives = 112/324 (34%), Gaps = 13/324 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKK------EESSTFLAVIATVSVMCLFIVPLLFLFYY 84
             P L  ++I F    +              ++ ++F  VI+ +  + + I  +  +   
Sbjct: 42  IMPFLLGIMIAFILNVLMIRIEKILSRFILDKKYTSFKRVISIIVSLLIVIGVIGIIITL 101

Query: 85  GMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
            + E+   +  +V +        + W++         E W  +     S+        K 
Sbjct: 102 IIPELTNAIKVIVKSFPETFEQLQVWINQNGNSFPQLETWI-NSVDLNSIASELSGLFKI 160

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
                +         +F    L+++  I+   +      ++ +Q   L +   P      
Sbjct: 161 GLTGMLGSTVDVI-SMFFTSILNLVVGIVFALYILMSKETLKRQSHKLIDAYIPKRISVK 219

Query: 204 SRIVPKVIRSTF----LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
              V  + R+TF    +G T+ A   G +      +  +P    +G +  I A +P    
Sbjct: 220 LLEVGTLARTTFSNFVIGQTVEAFILGTLCAVGMAVLNLPYAPMVGSLVGITAFVPIVGA 279

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                +  ++++  +   A    ++  +   +    + P +VG  + LP +   F +  G
Sbjct: 280 FIGGGIGAFMILTVDPMQALIFIIFLVVLQQLEGDLIYPRVVGSSVGLPSIWVLFAVTVG 339

Query: 320 VRTMGLLGLFIGPVLMALIAVIWK 343
               G+ G+     +++++  + K
Sbjct: 340 GGLWGITGMLFSVPVLSVVYALIK 363


>gi|168181101|ref|ZP_02615765.1| sporulation integral membrane protein YtvI [Clostridium botulinum
           NCTC 2916]
 gi|226951086|ref|YP_002806177.1| sporulation integral membrane protein YtvI [Clostridium botulinum
           A2 str. Kyoto]
 gi|182668156|gb|EDT80135.1| sporulation integral membrane protein YtvI [Clostridium botulinum
           NCTC 2916]
 gi|226841539|gb|ACO84205.1| sporulation integral membrane protein YtvI [Clostridium botulinum
           A2 str. Kyoto]
          Length = 351

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/333 (13%), Positives = 114/333 (34%), Gaps = 26/333 (7%)

Query: 15  MIMFIILVSLYFL-----KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           +I+F I+ ++ FL       +  P + A +         +  I K +  ++  + I T+ 
Sbjct: 11  LILFFIIYTISFLIFFKTLPYTLPFVLAFLFALVLKKPANYLIKKLKIKNSLASFIVTLV 70

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              + I  L +     + E+ +                          +   ++  +L+ 
Sbjct: 71  FFSIIITLLFWGINLLVNEVIDFGRNAQAYLYSHEEE--------ISNYVDNIYRYYLNL 122

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY----------CLSIIFMIIALFFFYR 179
           P S+    E  +  +            G I   +           + I+F +++ +FF +
Sbjct: 123 PPSIIDSIEKTIGNSFSKISNIIVFITGKIVSSFIGLLTSIPYILMLILFTLLSTYFFTK 182

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D    + ++  +  +   + +  I     K++    L    +           +++  + 
Sbjct: 183 DITKHNNKISKIIFNEHSSKFSHIYLESKKMLNGYILSYLTLIGITFFETLIIFFIFNIK 242

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
             +   +  AI   +P  G    +  ++ IY+L+  N      L +     +  + + L 
Sbjct: 243 YSIMFSITAAIADFLPILGIGTIYVPLALIYILVYKNYVVGIGLLI-SYAAVSTIRQILE 301

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           P L+   + L  +     +  G++  G+ G+F 
Sbjct: 302 PKLLSSSLGLHPISILAAIFIGLKANGISGMFF 334


>gi|302392163|ref|YP_003827983.1| hypothetical protein Acear_1408 [Acetohalobium arabaticum DSM 5501]
 gi|302204240|gb|ADL12918.1| protein of unknown function UPF0118 [Acetohalobium arabaticum DSM
           5501]
          Length = 355

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 57/317 (17%), Positives = 127/317 (40%), Gaps = 9/317 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +     PVL      +   PI   F ++    +  + +   + ++   +V + F     
Sbjct: 36  VISIILLPVLLGGFFYYLLRPIVRFFTARVNSKNLAILITGLLIIIAAVVV-IYFGGSII 94

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             E+++L++   L  +        +  I  G    +  +      + L        K + 
Sbjct: 95  YTELEKLINYFSLNYEVIRENISRI--IKLGNGHLDFLSDFNIQKRLLGFAQRMLEKFSN 152

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            +F+  F+S       +    ++ +   +F+F +D   I   L S          K++ R
Sbjct: 153 YNFMGAFSS-----LTNLGTIVVLIPFVVFYFLKDDHKIYYLLLSWFTEENKPQAKRMLR 207

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + + + +      I+A   G  +   Y L G+P+ +AL +I AI +++P   P      
Sbjct: 208 EIDEALATYIGTQLIVAFILGSFMFVGYLLIGLPNSLALALIIAITSLVPILGPALGILP 267

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++++ +  N      LF+  A+  ++    +RP + GG + +  L   F ++  +   G+
Sbjct: 268 ALFVALTTNFLMIVKLFIVLAVAQYLEGNLVRPIVQGGKLNIHPLVVLFLIIISILLFGV 327

Query: 326 LG-LFIGPVLMALIAVI 341
           LG LF+ P+ + +  +I
Sbjct: 328 LGALFVVPIYVVVRIII 344


>gi|257866043|ref|ZP_05645696.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257872374|ref|ZP_05652027.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257875678|ref|ZP_05655331.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
 gi|257799977|gb|EEV29029.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257806538|gb|EEV35360.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257809844|gb|EEV38664.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
          Length = 347

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/340 (15%), Positives = 110/340 (32%), Gaps = 24/340 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L    + RW ++F++   L+  +     +L   I  +  + +      K        +++
Sbjct: 8   LQNLVLRRWTVLFMLAGILFLFRSLMTILLLTFIFTYLIYRLVLLLHRKSHLPIKLTSIL 67

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
               ++ +  +         + +  +LV+ V    Q        +  +   +  SE   K
Sbjct: 68  TYSLIVFILYLVATNYVPIIIKQSVQLVNSVADFYQRTDSNNELIEYVLNLLQTSEYIQK 127

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                             +G+  +  +   FG + L   +S +      FFF  D     
Sbjct: 128 L----------------QSGVLVVINYLYNFGELALTVLISFLLS----FFFMIDNKKTV 167

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                  +     +++ +  +  K  R+         +IA+    +   A  + G P  +
Sbjct: 168 AFSRLFLQGRGAWFFEDVYYLGAKFTRAFGNVIETQLVIALVNTAITVFALAVMGFPQLL 227

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +L ++   +++IP    I     ++      G   +   + L       +    L P L+
Sbjct: 228 SLALMIFFLSLIPVAGVIISCIPLTFIAYSIGGFNDVIYILLIIVFVHALESYILNPRLM 287

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
               ++P   TF  L       GL GL IG  L      +
Sbjct: 288 ANKTEIPMFYTFILLYLSEHLFGLWGLIIGIPLFTFFLDL 327


>gi|221197812|ref|ZP_03570858.1| integral membrane transport protein [Burkholderia multivorans
           CGD2M]
 gi|221204630|ref|ZP_03577647.1| integral membrane transport protein [Burkholderia multivorans CGD2]
 gi|221175487|gb|EEE07917.1| integral membrane transport protein [Burkholderia multivorans CGD2]
 gi|221181744|gb|EEE14145.1| integral membrane transport protein [Burkholderia multivorans
           CGD2M]
          Length = 721

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 65/193 (33%), Gaps = 5/193 (2%)

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
           + A  F    +    +I  +I+   F       + ++L  L                 + 
Sbjct: 258 QLAQGFLSPVVSPLATIGIVIVTAIFILLQRADLRERLIRLAGSHDMHRTTTAMSDAARR 317

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
           +   FL    + +  G VL     + G+P  +  GVI  +M  +P  G  I+    +I L
Sbjct: 318 LSRYFLAQLCVNVCVGAVLSLGLAVIGLPGALLFGVIAGLMRFVPYVGVWIAALPATI-L 376

Query: 270 LIKGNIFNATCLFLWGAIELF--IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
               +   +  + +     +      + L P + G    L  +      +      G +G
Sbjct: 377 AAAMSPGWSMIVAILVLFSVTEVAAGQFLEPLVYGHSTGLSPIAVIVAAIFWSWLWGPVG 436

Query: 328 LFIG-PVLMALIA 339
           L +  P+ + L+ 
Sbjct: 437 LVLSTPLTLCLVI 449


>gi|227530005|ref|ZP_03960054.1| permease [Lactobacillus vaginalis ATCC 49540]
 gi|227350084|gb|EEJ40375.1| permease [Lactobacillus vaginalis ATCC 49540]
          Length = 367

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 56/300 (18%), Positives = 108/300 (36%), Gaps = 25/300 (8%)

Query: 32  APVLSALIIGFTSW-------PIYSSFISKKEE---SSTFLAVIATVSVMCLFIVPLLFL 81
            P+L   +I +           +YS     K        F  V++ ++++ + ++    +
Sbjct: 41  MPLLIGGVIAYIVNLLLNQYEHLYSRIFKTKWAQKYRRLFGIVLSYLTIILILVIVSSLV 100

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               +  +K LV+       HG  V R++  I      + LW            + +   
Sbjct: 101 IPELISCIKLLVAN------HGQVVNRFVKVIEHNKDLNTLWNSFDLEKIKWNQVGKYLT 154

Query: 142 KTNGIDF--IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
              G  F  I   AS          +++ F I  L +      ++S+Q+  L     P  
Sbjct: 155 AGFGGTFKAIISTASSVFSTVATAVVALFFSIYLLIYK----ETLSRQIKRLINAYLPQL 210

Query: 200 WKKI---SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
            K I   +++      S  +G    A   G+       +  +P    +GV+TAI A+IP 
Sbjct: 211 GKHIFYVTKVFNDSYSSYIVGQCKDAAILGIFCFIGMSVLRMPYASMIGVVTAIGALIPI 270

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
              I    V + ++   +   A    ++  I   + ++   P +VG  I LP +  F  +
Sbjct: 271 IGAILGAGVGVIIIFAVSPIQAGMFLIFIIILQQLDNRITYPLVVGKSIGLPSVWVFAAV 330


>gi|254432531|ref|ZP_05046234.1| conserved domain protein, putative [Cyanobium sp. PCC 7001]
 gi|197626984|gb|EDY39543.1| conserved domain protein, putative [Cyanobium sp. PCC 7001]
          Length = 341

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/311 (15%), Positives = 111/311 (35%), Gaps = 30/311 (9%)

Query: 31  FAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
               ++A ++     +P+    + +   + +   ++  +  + +  + +  L    + + 
Sbjct: 41  LTLFIAAAMLAVLLDFPV--RRLVRLGCARSLAILLTVLGTLGVVGLFVQVLGSQLINQG 98

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             L++ +VLA Q                         L     LK +    L       +
Sbjct: 99  STLLNDLVLAFQRPD----------------------LPFHSFLKTIEPPQLIELLRASL 136

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                  G  F     S+  ++I ++    +G +  Q L  L   +      +  R V K
Sbjct: 137 GTSLGVVGGAFTSVFGSVFLVVIVVYMLIDNGATWRQLLRLLPIDV----RDRFDRSVQK 192

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIY 268
            +     G   + I   L     + + GV   + L ++  ++  IPG GA +     +  
Sbjct: 193 NVLGFLRGQVTLMIFLCLASLLVFAVLGVKFSLLLAIVVGVLDAIPGIGATLGVIVAATV 252

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           + +    + A  + +   +   I D  + P ++G  +++  +  FF L  G R  GLLG+
Sbjct: 253 VFLTQGQWLALQVVIASVVLQQIQDNLIHPRVMGRVLEIQPVVLFFALFVGERLAGLLGV 312

Query: 329 FIGPVLMALIA 339
           F+   +  ++ 
Sbjct: 313 FLAIPVAGMLL 323


>gi|170756253|ref|YP_001783269.1| sporulation integral membrane protein YtvI [Clostridium botulinum
           B1 str. Okra]
 gi|169121465|gb|ACA45301.1| sporulation integral membrane protein YtvI [Clostridium botulinum
           B1 str. Okra]
          Length = 351

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/333 (13%), Positives = 115/333 (34%), Gaps = 26/333 (7%)

Query: 15  MIMFIILVSLYFL-----KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           +I+F I+ ++ FL       +  P + A +         +  I K +  ++  + I T+ 
Sbjct: 11  LILFFIIYTISFLIFFKTLPYTLPFVLAFLFALVLKKPANYLIKKLKIKNSLASFIVTLI 70

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              + I  L +     + E+ +                          +   ++  +L+ 
Sbjct: 71  FFSIIITLLFWGINLLVNEVIDFGRNAQAYLYSHEEE--------ISNYVDNIYRYYLNL 122

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY----------CLSIIFMIIALFFFYR 179
           P S+    E  +  +            G I   +           + I+F +++ +FF +
Sbjct: 123 PPSIIDSIEKTIGNSFSKISNIIVFITGKIVSSFIGLLTSIPYILMLILFTLLSTYFFTK 182

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D    + ++  +  +   + +  I     K++    L    +           +++  + 
Sbjct: 183 DITKHNNKISKIIFNEHSSKFSHIYLESKKMLNGYILSYLTLIGITFFETLIIFFIFNIK 242

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
             +   +  AI   +P  G    +  ++ IY+L+  N   A  L +     +  + + L 
Sbjct: 243 YSIMFSITAAIADFLPILGIGTIYVPLALIYILVYKNYVVAIGLLI-SYAAVSTIRQILE 301

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           P L+   + L  +     +  G++  G+ G+F 
Sbjct: 302 PKLLSSSLGLHPISILAAIFIGLKANGISGMFF 334


>gi|297467484|ref|XP_599430.5| PREDICTED: chromosome 9 open reading frame 5-like isoform 2 [Bos
           taurus]
 gi|297478245|ref|XP_002689957.1| PREDICTED: chromosome 9 open reading frame 5-like [Bos taurus]
 gi|296484392|gb|DAA26507.1| chromosome 9 open reading frame 5-like [Bos taurus]
          Length = 863

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 88/245 (35%), Gaps = 15/245 (6%)

Query: 108 RWLSDIPGGMWASELWTKHL------SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL 161
            WL DI      +    +++           + +     L  + I  +       G   L
Sbjct: 592 SWLGDILDWQDIASFVHENIETFLSILESLWVVMSRNVSLLFSTITTLLTILFYSGTALL 651

Query: 162 DYCLSIIFMIIALFFFYRDG---FSISQQLDSLGEHLFPAYWKKIS-RIVPKVIRSTFLG 217
           ++ LS+I  +  LF+        +   + + SL     P     I  + V + IR  F  
Sbjct: 652 NFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIRGVFDA 711

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIF 276
              +A   GL     + + G+        + AI+  +P  G   +     + L +   + 
Sbjct: 712 SLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWLTQGLG 771

Query: 277 -NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             A  L ++  +  + VD  +   + GG        T   + GG   +GL G  IGP+L+
Sbjct: 772 CKAILLLVFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAIIGPILL 828

Query: 336 ALIAV 340
            ++ V
Sbjct: 829 CILVV 833


>gi|190150093|ref|YP_001968618.1| permease perM-like protein [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|307263427|ref|ZP_07545043.1| Permease PerM [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|189915224|gb|ACE61476.1| putative permease perM-like protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306871305|gb|EFN03033.1| Permease PerM [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 353

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 59/354 (16%), Positives = 118/354 (33%), Gaps = 15/354 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           ++   +PQ +    I+ I    +YF      P+L A++  +   WPI       K     
Sbjct: 10  KQKFNDPQAVALLGILLIGFGIIYFFSDLIMPLLIAIVFAYLLEWPIKLLTQKLKFPR-- 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEM-KELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
              +++ + V+  FI    FLF   +  +  + V+ +         +  WL  +P     
Sbjct: 68  ---LLSLILVLGSFISLSTFLFVVMLPTLWNQAVTFIRDLPSMLNLLNAWLEALPEHYPE 124

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              +    S    LK     F ++     +    S  G+    + + ++      FF  +
Sbjct: 125 LIDYAMLDSLMNMLKEKILGFGESLLALSVNSIISLVGLGIYAFLVPLMV-----FFLLK 179

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D     +                +   + + I +   G  +  +  G+V  + +    + 
Sbjct: 180 DKPLFVRGFIKFLPK-NRRLAANVWFEMQQQIANYIRGKVLEILIVGIVTYAIFLFFDLR 238

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLR 297
             + L V   +  +IP  GA +    V++  L   G   +   L L   I   +    + 
Sbjct: 239 YPLLLSVAVGLSVLIPYIGAVLVTIPVALVALFQFGLSTDFYYLLLAFVISQLLDGNLVV 298

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           PFL    + L  L     ++      G  G+F    L  L+  +        +E
Sbjct: 299 PFLFSEAVNLHPLTIIVAVLIFGGLWGFWGVFFAIPLATLVKAVINALPSNEEE 352


>gi|189425972|ref|YP_001953149.1| hypothetical protein Glov_2922 [Geobacter lovleyi SZ]
 gi|189422231|gb|ACD96629.1| protein of unknown function UPF0118 [Geobacter lovleyi SZ]
          Length = 357

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/323 (12%), Positives = 100/323 (30%), Gaps = 14/323 (4%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
            L + +I +   P+      + +       +   + ++  F   L FL     +     +
Sbjct: 42  FLLSFVIAYLLDPLVVRLEKRLKRIHAIALLYVVLGIISTFG--LAFLLPMLTISWDSFL 99

Query: 94  SKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
             +     Q    +  W S +P    + E+     +   +   ++E             +
Sbjct: 100 RNLPQQLQQIKQALLGWQSTLPTHYGSEEITWLLDNIIGNADSMAEKA---------GIW 150

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
           A  F         ++I   I +FF       I                 ++ R +   + 
Sbjct: 151 AYGFATRMFFNVFNLILAPILVFFMLNYKQKIMDTTALWIPETRRDLILQMGREIDSSVG 210

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI 271
               G  +++I   L         G+P  +  G+     +++P  G  ++     ++  +
Sbjct: 211 GYIRGQVMVSIVVALATIPTLMWLGIPHPILCGLFAGAASILPFVGVILAMLPPLLFAWL 270

Query: 272 KGNIFNATC-LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
                     + +  A+  F+    ++P +    + L  L T   ++     MG  G+ +
Sbjct: 271 TYGTGTIIVKVLIAFAVIYFLEGYLVKPLVFKESMNLNPLLTIIMVMAFGELMGFWGILL 330

Query: 331 GPVLMALIAVIWKESIMAIKENK 353
              + A + +  +  +     N 
Sbjct: 331 ALPITAAMIIASQHWLKGDFANP 353


>gi|256544459|ref|ZP_05471832.1| membrane protein [Anaerococcus vaginalis ATCC 51170]
 gi|256399784|gb|EEU13388.1| membrane protein [Anaerococcus vaginalis ATCC 51170]
          Length = 398

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/344 (13%), Positives = 120/344 (34%), Gaps = 9/344 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK---KEESSTFLAVIATVSVMCLFIV 76
           + V +  ++ F    + A II            SK    E++   + V + +S   LFI+
Sbjct: 35  LTVFIAVIQPFLIGFMLAFIINLPMNFFERKVYSKIFKTEKTKKLVPVFSLISSWILFIL 94

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL---SDIPGGMWASELWTKHLSHPQSL 133
            ++      +  + + V+ ++      +     L   + +            +     ++
Sbjct: 95  GIVIFLNVLIPRISKAVTALIERFPLFLDDLIDLLNKNKLTKNFADDAQKYINSVDWNNV 154

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY--RDGFSISQQLD-S 190
            +  + +      +   +  S    +           I ++F     +D   ++ ++  S
Sbjct: 155 LVQVKDYFVGEAGNIFDKTTSIINSVSSTIITIAAATIFSVFVLINKKDLKILANRIIYS 214

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L +        K++ +      S      + ++  G+++     +  +P      ++ AI
Sbjct: 215 LFKRSTADEINKVASLSYSSFASYINSKALSSLILGILVFVGMLILKIPFAAMAAILVAI 274

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
              IP   P+  T + + L+   + F +    ++  I   +    + P L G  I LP +
Sbjct: 275 ADFIPYVGPLIATVIMMILIFIESPFKSLVFLIFLLIAQQVQGSIIYPALAGKTIGLPSI 334

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                +  G    G++G+ +   + +++  +  E +      KE
Sbjct: 335 WVIVSIAIGGSLFGIVGMLVSIPIASILYTLMNEKMDKTLAKKE 378


>gi|229553048|ref|ZP_04441773.1| possible permease [Lactobacillus rhamnosus LMS2-1]
 gi|229313545|gb|EEN79518.1| possible permease [Lactobacillus rhamnosus LMS2-1]
          Length = 363

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 60/344 (17%), Positives = 123/344 (35%), Gaps = 23/344 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E  +N   + R +++F + + L+F +   + +L   I  F    +  +            
Sbjct: 10  EKFINNVPVRRTVVLFSVFLVLWFARSIMSDILLTFIFAFLVSRLVHAVQRHVHVRP--- 66

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                V V+ ++I+ +L L Y  +  +  ++ + +        V  + +           
Sbjct: 67  ----FVIVVPVYILVILGLIYAAVHYVPAIIHQTITLFNS---VQDFYNSDAFANNQVMQ 119

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           W    +   +L    +T     G+  +  +A   G + L   LS I      FFF  +  
Sbjct: 120 WVLQSTKSLNLTEQLKT-----GLSTVLEYAGNIGAMGLTLVLSFILS----FFFTIELD 170

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVP 239
           S+        +  F  Y+K +     K I +          IA+   ++         +P
Sbjct: 171 SLPAFGQLFLDSPFGWYFKDLRYFALKFINTFGVVMEAQIFIAVVNTVITTITLLFMKMP 230

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           +  +L ++  ++++IP  GA IS   ++I     G   +   + +  A    +    L P
Sbjct: 231 NIPSLAIMVFLLSLIPVAGAIISLIPLTIIGYTVGGWQDVITILIMIAAIHVLEAYVLNP 290

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
             +    +LP   TF  L+   R  G  GL +G  +      + 
Sbjct: 291 KFMSSRTQLPVFFTFVVLLVAERLFGTWGLIVGIPIFTFFLDVL 334


>gi|73971940|ref|XP_855287.1| PREDICTED: similar to CG2698-PA [Canis familiaris]
          Length = 950

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 9/190 (4%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDG---FSISQQLDSLGEHLFPAYWKKIS-RIVPKVIR 212
           G   L++ LS+I  +  LF+        +   + + SL     P     I  + V + IR
Sbjct: 720 GTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIR 779

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI 271
             F     +A   GL     + + G+        + AI+  +P  G   +     + L +
Sbjct: 780 GVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWL 839

Query: 272 KGNIF-NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +   A  L ++  +  + VD  +   + GG        T   + GG   +GL G  I
Sbjct: 840 TQGLGCKAILLLVFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAII 896

Query: 331 GPVLMALIAV 340
           GP+L+ ++ V
Sbjct: 897 GPILLCILVV 906


>gi|46907181|ref|YP_013570.1| hypothetical protein LMOf2365_0969 [Listeria monocytogenes str. 4b
           F2365]
 gi|226223567|ref|YP_002757674.1| hypothetical protein Lm4b_00969 [Listeria monocytogenes Clip81459]
 gi|254823780|ref|ZP_05228781.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|254993695|ref|ZP_05275885.1| hypothetical protein LmonocytoFSL_12398 [Listeria monocytogenes FSL
           J2-064]
 gi|255520753|ref|ZP_05387990.1| hypothetical protein LmonocFSL_05921 [Listeria monocytogenes FSL
           J1-175]
 gi|46880448|gb|AAT03747.1| putative membrane protein [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|225876029|emb|CAS04735.1| Conserved hypothetical membrane protein [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|293593001|gb|EFG00762.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
          Length = 348

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/345 (15%), Positives = 114/345 (33%), Gaps = 25/345 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  ++ + LY L+     +L   I  F    + +  + +       +
Sbjct: 5   EKLKENDTARRVLVFVLLGIVLYLLRSMIDLILLTFIFAFLVTRLENVILKRVRVPRKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V     V ++      + ++ +LV  +V    +  P    +     G      
Sbjct: 65  VIVLYSLVAVFLYVAIVHFLPILINQISQLVDSLVKLYNN--PSDNTIVKWIVGFLKESN 122

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             K+L                 G+DFI    S  G + L + L++I  +    FF  +  
Sbjct: 123 IQKYLQ---------------AGVDFIIASLSGIGSVGLSFFLALILSL----FFSLEKE 163

Query: 183 SISQQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            ++              +K+     +              +IA+    +   A +L   P
Sbjct: 164 RVTSFTGQFMTSKVGFIFKEAAFFGKKFVSTFGVVLEAQLMIALVNTFITTIALYLMDFP 223

Query: 240 SHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             ++L ++  ++ +IP    I     + +     G   +   + +   I   I    L P
Sbjct: 224 QLLSLSIMVFVLGLIPVAGVIISCIPLVLIAYSVGGFQDVVYILITVVIVHAIETYILNP 283

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L+     LP   TF  L+      G+ GL +G  +   +  I +
Sbjct: 284 KLMSSKTNLPVFYTFIILIFSETFFGVWGLIVGIPVFVFLLDILE 328


>gi|77164902|ref|YP_343427.1| hypothetical protein Noc_1408 [Nitrosococcus oceani ATCC 19707]
 gi|254434366|ref|ZP_05047874.1| conserved domain protein, putative [Nitrosococcus oceani AFC27]
 gi|76883216|gb|ABA57897.1| Protein of unknown function UPF0118 [Nitrosococcus oceani ATCC
           19707]
 gi|207090699|gb|EDZ67970.1| conserved domain protein, putative [Nitrosococcus oceani AFC27]
          Length = 372

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 57/341 (16%), Positives = 116/341 (34%), Gaps = 12/341 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           +PQ     +++ +   ++ F+    APVL++L+I +    I      +      ++A   
Sbjct: 14  DPQVTGLAILLAVGFATVVFMGHVLAPVLASLVIAYLLEGIVGYLERR--GCPRWIA--- 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
              V+ +F+V ++ LF      +  L  +V    Q    +      +   +         
Sbjct: 69  ---VILVFVVFMVALFGDIFGLIPLLSQQVTQFFQLLPKMIAQGQQLLLSLPEYYPNLFS 125

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                +L       +   G + +    +    + +   + ++ + + +FFF +D   +  
Sbjct: 126 QDQVNNLVSALHVEVAQLGQEMLSWSLASVTSLIM-LGMYLVLVPLLVFFFLKDKNRLVG 184

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
              S           ++ R V   I +   G  I  +    V    ++L G+   + L V
Sbjct: 185 WCKSYLPQ-ERKLIVQVWREVDFQIANYIRGKCIEILIVWAVSFITFYLLGLQFSMLLSV 243

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATC-LFLWGAIELFIVDKTLRPFLVGGP 304
           +  +  +IP  GA      V+     +  +       F    I  F+    L P L    
Sbjct: 244 LMGLSVIIPYIGAMAITLLVAFVAYFQWGLSAELAEAFGVCVIIQFLDGNVLAPLLFAEV 303

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           + L  +     +V      G  GLF    L  LI  + K  
Sbjct: 304 VDLHPVAVIVAIVVFGGVWGFWGLFFAIPLATLIQAVLKAW 344


>gi|307565980|ref|ZP_07628438.1| membrane family protein [Prevotella amnii CRIS 21A-A]
 gi|307345168|gb|EFN90547.1| membrane family protein [Prevotella amnii CRIS 21A-A]
          Length = 360

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/359 (15%), Positives = 127/359 (35%), Gaps = 17/359 (4%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKE-ES 58
             ++    +RW ++ +IL +++F    L     P   A ++ +  +P+      K    S
Sbjct: 3   HTISLDKFLRWTVITLILAAVFFTLKALSEVLLPFFIAWLLAYLLYPVVKFIQYKMHVTS 62

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                ++  + ++ +    +  +    + EM++L        Q         + +     
Sbjct: 63  RAISIILTFILIIAIIAGIVFIIVPPFISEMEKLEVLANKYIQSNTHSNNIAAMLKQWFT 122

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                  H    +      +T +       +     +   +      S I ++  +FF  
Sbjct: 123 THRFEINHFLKSRDFTDAIKTAMPQ-----VFALLGQTANVVFSVIASFITLLY-MFFIL 176

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D  S+ +    +    + ++ + ++  V K + S   G  ++A+   ++    + +   
Sbjct: 177 LDYESLGENFFKMIPRKWRSFSRVLASDVEKALNSYIRGQGMVALCMAIMFCIGFSIIDF 236

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLI----KGNIFNATC--LFLWGAIELFIV 292
           P  + LG++  I+ ++P    ++    +I  L+     G+ F        L   I   I 
Sbjct: 237 PMAIGLGILIGILDLVPYLHALALIPTAILALMKAADTGHNFWMIFGGALLVFIIVQIIT 296

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           D  + P ++G  + L        L      +G +GL I   L  +I   WK  +   +E
Sbjct: 297 DMIITPKIMGKAMGLNPAMLLLSLSIWGALLGFIGLIIALPLTTIIIAYWKRYVTKDEE 355


>gi|168700115|ref|ZP_02732392.1| hypothetical protein GobsU_11345 [Gemmata obscuriglobus UQM 2246]
          Length = 421

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 120/331 (36%), Gaps = 8/331 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK---EESSTFLAVIATVSVMCL 73
           +F I V+LY     F PV+ ++++    +P       +       +  L++ A V++  +
Sbjct: 18  VFGISVALYLGSSIFIPVVFSILLASILYPFAQFTHERLLVPWFFACLLSIFALVALHLV 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            I    +     +  + +   + +            L   P              HP+  
Sbjct: 78  VIGAFAWAIPQTLKGLPQSEEQWIGQYNKVQSNLGTL--FPIHDDDEVFGRADQQHPERH 135

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                   K    D +    +R  +  LD+    I ++    F   +G  ++ ++ ++  
Sbjct: 136 PKAVALLRKQLSEDSMSSVLARLSLAGLDHLWQAILVLFITLFLIFEGQMLADKVKAIFG 195

Query: 194 HLFPAYWKKISR--IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                  +       + + IR+  +  T++ +G  LVLG+ Y   G+       ++ A++
Sbjct: 196 TSMETRGRVTLAFAEMGEAIRTYLVWRTVVNLGLALVLGTVYQQVGLQHWYLWALLVAVL 255

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + +P  G   +     +  L+  +   A  + ++    +      + P+++G  + L   
Sbjct: 256 SYVPYIGTIAAGIPPFLDALLFVDPLAAFGIAIFYTCVVTFEGYIIVPWVMGRSMDLNAT 315

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                 +   +  G+ GLF+   LMA +  +
Sbjct: 316 TVLLACLYWHQVWGIAGLFLAMPLMAALKAV 346


>gi|147920906|ref|YP_685287.1| hypothetical protein RCIX547 [uncultured methanogenic archaeon
           RC-I]
 gi|110620683|emb|CAJ35961.1| conserved hypothetical protein [uncultured methanogenic archaeon
           RC-I]
          Length = 385

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/358 (13%), Positives = 126/358 (35%), Gaps = 29/358 (8%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           ++ L+ F    +  + + + + PI     S+  ++   L  ++ + +    I+ + +   
Sbjct: 25  VWILRPFLDVFVYGIFVYYITRPIKQWL-SRYIKNEGILVSVSLLMLALPLIILIAYTLL 83

Query: 84  YGMLEMKELVSK----VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            GM ++  +V+       L +     +    S +   + +     + ++           
Sbjct: 84  VGMSQLMAVVNSYGLTAALPSGPLTNMTTSFSQLHSNLTSGNFTLESVTDITRQDWYKTI 143

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
              +  +  +   A   G   +D    +  + +  F+  ++   + +        L   +
Sbjct: 144 SGYSGNLPLLQAIAFSTGSTIVDIAFKLFIIFLVGFYMLKEDAHMQRWFAGTFPKLMDEH 203

Query: 200 WKKISRIVPKV---IRSTFLGMTIIAIGEGLVLGSAYWLAG---------VPSHVALGVI 247
            + + R    V   ++  F G  +  +   ++    +             +PS + LG++
Sbjct: 204 NRLLPRYASAVDADLQKLFFGNLLSIVFFAIIAAVVFEGLSIFAPVPSLQIPSPILLGIL 263

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATC---------LFLWGAIELFIVDKTLR 297
             + A+IP  G  +    + +YLLI   I              +       L I    ++
Sbjct: 264 CGVSALIPIVGMWLVAGPLFLYLLISSLIAGTLFTHFGYFLFMVLAIFVFVLTIPSFVIQ 323

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           PF+  G  ++      F  V G    G+ GLF+G +++ L+   +   +  +    ++
Sbjct: 324 PFMARG--QVHSGLLMFAYVLGPLVFGISGLFLGAIVLVLVTHYFGIVVPEMAAEGQE 379


>gi|293570925|ref|ZP_06681970.1| transport protein [Enterococcus faecium E980]
 gi|291608988|gb|EFF38265.1| transport protein [Enterococcus faecium E980]
          Length = 345

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/356 (14%), Positives = 117/356 (32%), Gaps = 23/356 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  L  + I R  ++  ++  L+ ++     +L   I  +    +           +  L
Sbjct: 5   QRFLANEKIRRLTVLLSVIFVLFLVRSMITTILLTFIFTYLMIHLVQIIQRFVRIPTGIL 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A++    ++ L  +         + +  +++  V+   +H           P   +    
Sbjct: 65  AIMIYTLIVYLIYLAFTKYIPMLIHQTFDMIQSVIDFYEHQPKDAD-----PVLQYIHNY 119

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             ++    Q            NG      +    G + + + +S I      FFF  +  
Sbjct: 120 IERNDFFEQL----------QNGASIALGYLQDIGKLAVAFAMSFILS----FFFMIEKQ 165

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVP 239
                     +  F  +++ +     K + +         IIA+   L+   A    G  
Sbjct: 166 KTILFSRLFLKSEFSWFFQDLYYFADKFVNTFGLVLEAQFIIALLNTLLTTIALAAFGFH 225

Query: 240 SHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             ++L ++  I+++IP    I     +S     +G I +   + +   +   I    L P
Sbjct: 226 QLLSLAIMIFILSLIPVAGVIISCIPLSFIAYSQGGIRDVVYILMTILVVHLIESYVLNP 285

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            L+     LP   TF  L+   R  G+ GL +G  +      + K   +     +E
Sbjct: 286 KLMSSKTDLPIFYTFVVLLVSERFFGVWGLIVGIPIFTFFLDVLKVKKIPNHSPRE 341


>gi|260459332|ref|ZP_05807587.1| protein of unknown function UPF0118 [Mesorhizobium opportunistum
           WSM2075]
 gi|259034886|gb|EEW36142.1| protein of unknown function UPF0118 [Mesorhizobium opportunistum
           WSM2075]
          Length = 663

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 57/340 (16%), Positives = 115/340 (33%), Gaps = 28/340 (8%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           LYF +  F P+  AL++ F   P+ S+   K+       AVI++V         L F  +
Sbjct: 44  LYFGREVFLPIAIALLLTFALAPVVSAL--KRIGIPRLAAVISSVLGTFAA---LAFFSF 98

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-----------------MWASELWTKH 126
             + ++ EL   V L   + +   R L +   G                 +   E     
Sbjct: 99  IVVTQVGELAQNVSLYQTNILAKVRSLKETGVGGGIIARLTGVIERVGQEINKQEPAQPA 158

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            S PQ   +  E       ++ +    +          L I+ +I    F   +   +  
Sbjct: 159 ASQPQREPVPVEIVSHERPLEILQNLIAPLVSPLASAGLIIVVVI----FMLLEREDLRD 214

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           +   L  +       +  +   K +    L   ++ I   + +    W+ G+P+ +  G+
Sbjct: 215 RFIRLVGYGDLHRTTEALQDAGKRLGRYLLMQLVVNILYAVPISIGLWILGIPNALLWGL 274

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF--IVDKTLRPFLVGGP 304
           +   +  +P   P+    + ++L +      +  L+      +   I    + P+L G  
Sbjct: 275 LALALRFVPYIGPVIGALLPLFLALAVAPGWSLLLWTAALFVIMEVITGNVIEPWLYGSR 334

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  L      +      G LGL +   L   + V+ + 
Sbjct: 335 TGLSPLAVIVAAIFWTWLWGPLGLVLSTPLTVCLVVLGRH 374


>gi|257884562|ref|ZP_05664215.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257887388|ref|ZP_05667041.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257895880|ref|ZP_05675533.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|257898506|ref|ZP_05678159.1| conserved hypothetical protein [Enterococcus faecium Com15]
 gi|257820400|gb|EEV47548.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257823442|gb|EEV50374.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257832445|gb|EEV58866.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|257836418|gb|EEV61492.1| conserved hypothetical protein [Enterococcus faecium Com15]
          Length = 350

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/356 (14%), Positives = 117/356 (32%), Gaps = 23/356 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  L  + I R  ++  ++  L+ ++     +L   I  +    +           +  L
Sbjct: 10  QRFLANEKIRRLTVLLSVIFVLFLVRSMITTILLTFIFTYLMIHLVQIIQRFVRIPTGIL 69

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A++    ++ L  +         + +  +++  V+   +H           P   +    
Sbjct: 70  AIMIYTLIVYLIYLAFTKYIPMLIHQTFDMIQSVIDFYEHQPKDAD-----PVLQYIHNY 124

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             ++    Q            NG      +    G + + + +S I      FFF  +  
Sbjct: 125 IERNDFFEQL----------QNGASIALGYLQDIGKLAVAFAMSFILS----FFFMIEKQ 170

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVP 239
                     +  F  +++ +     K + +         IIA+   L+   A    G  
Sbjct: 171 KTIFFSRLFLKSEFSWFFQDLYYFADKFVNTFGLVLEAQFIIALLNTLLTTIALAAFGFH 230

Query: 240 SHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             ++L ++  I+++IP    I     +S     +G I +   + +   +   I    L P
Sbjct: 231 QLLSLAIMIFILSLIPVAGVIISCIPLSFIAYSQGGIRDVVYILMTILVVHLIESYVLNP 290

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            L+     LP   TF  L+   R  G+ GL +G  +      + K   +     +E
Sbjct: 291 KLMSSKTDLPIFYTFVVLLVSERFFGVWGLIVGIPIFTFFLDVLKVKKIPNHSPRE 346


>gi|295091707|emb|CBK77814.1| Predicted permease [Clostridium cf. saccharolyticum K10]
          Length = 417

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 81/231 (35%), Gaps = 3/231 (1%)

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF---ASRFGMIFLDYCLSIIFMIIALF 175
             E         ++L   + +F+ +   + +      A         + +S IF +  L 
Sbjct: 139 IVEFINSIEIDWKTLMEETASFITSGAGNLLSSTVTAAVSIASGLTTFSISFIFSLYILL 198

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
                     Q   +            + R+  ++      G    A+  G +      +
Sbjct: 199 QKETLSRQFKQLCYAYFPESAVDKGLGVLRMTERIFSKFLTGQCTEAVILGTMFFVTLTI 258

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
             +P  + +GV+ A  A+IP        AV I+L++  +   A    +   +   I    
Sbjct: 259 LRLPFALLIGVLIAFTALIPIFGAFIGCAVGIFLMLMVSPVQAIWFTIIFLVLQQIEGNL 318

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           + P +VG  + LP +     +  G   MG++G+ I   L ++   + KE +
Sbjct: 319 IYPHVVGSSVGLPSIWVLVAVSLGGSMMGIVGMLIFIPLCSVGYTLLKEDV 369


>gi|237733694|ref|ZP_04564175.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229383292|gb|EEO33383.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 378

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/324 (14%), Positives = 114/324 (35%), Gaps = 13/324 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKK------EESSTFLAVIATVSVMCLFIVPLLFLFYY 84
             P L  ++I F    +              ++ ++F  VI+ +  + + I  +  +   
Sbjct: 42  IMPFLLGIMIAFILNVLMIRIEKILSRFILDKKYTSFKRVISIIVSLLIVIGVIGIIITL 101

Query: 85  GMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
            + E+   +  +V +        + W++         E W   +        LS  F   
Sbjct: 102 IIPELTNAIKVIVKSFPETFEQLQVWINQNGNSFPQLETWINSIDLNSIASELSGLF--K 159

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
            G+  +         +F    L+++  I+   +      ++ +Q   L +   P      
Sbjct: 160 IGLTGMLGSTVDVISMFFTSILNLVVGIVFALYILMSKETLKRQSHKLIDAYIPKRISVK 219

Query: 204 SRIVPKVIRSTF----LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
              V  + R+TF    +G T+ A   G +      +  +P    +G +  I A +P    
Sbjct: 220 LLEVGTLARTTFSNFVIGQTVEAFILGTLCAVGMAVLNLPYAPMVGSLVGITAFVPIVGA 279

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                +  ++++  +   A    ++  +   +    + P +VG  + LP +   F +  G
Sbjct: 280 FIGGGIGAFMILTVDPMQALIFIIFLVVLQQLEGDLIYPRVVGSSVGLPSIWVLFAVTVG 339

Query: 320 VRTMGLLGLFIGPVLMALIAVIWK 343
               G+ G+     +++++  + K
Sbjct: 340 GGLWGITGMLFSVPVLSVVYALIK 363


>gi|283798148|ref|ZP_06347301.1| putative membrane protein [Clostridium sp. M62/1]
 gi|291074128|gb|EFE11492.1| putative membrane protein [Clostridium sp. M62/1]
          Length = 417

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 81/231 (35%), Gaps = 3/231 (1%)

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF---ASRFGMIFLDYCLSIIFMIIALF 175
             E         ++L   + +F+ +   + +      A         + +S IF +  L 
Sbjct: 139 IVEFINSIEIDWKTLMEETASFITSGAGNLLSSTVTAAVSIASGLTTFSISFIFSLYILL 198

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
                     Q   +            + R+  ++      G    A+  G +      +
Sbjct: 199 QKETLSRQFKQLCYAYFPESAVDKGLGVLRMTERIFSKFLTGQCTEAVILGTMFFVTLTI 258

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
             +P  + +GV+ A  A+IP        AV I+L++  +   A    +   +   I    
Sbjct: 259 LRLPFALLIGVLIAFTALIPIFGAFIGCAVGIFLMLMVSPVQAIWFTIIFLVLQQIEGNL 318

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           + P +VG  + LP +     +  G   MG++G+ I   L ++   + KE +
Sbjct: 319 IYPHVVGSSVGLPSIWVLVAVSLGGSMMGIVGMLIFIPLCSVGYTLLKEDV 369


>gi|110803722|ref|YP_699066.1| permease [Clostridium perfringens SM101]
 gi|110684223|gb|ABG87593.1| putative membrane protein [Clostridium perfringens SM101]
          Length = 345

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/322 (16%), Positives = 117/322 (36%), Gaps = 19/322 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
            +     VL + I  +   P+Y     + + +  FLA+   +SV+ L +  L  L     
Sbjct: 34  FRDIIFIVLVSGIFAYILKPLYRFLCERTKINKNFLAMSIVLSVIFLILFFLTVLIPSMF 93

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E +     +         V  +++D+   M   EL          +  + E  +     
Sbjct: 94  KEGESFDGLING-------VELFINDLIMKMKFMEL---------GIFDVIEAQVTEKLN 137

Query: 147 DFIPRFASRFGMIFLDY---CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             +  FA+      + +    L+   + +  ++F   G  +S +          A  K +
Sbjct: 138 ILLVSFATSIINNLISFSENILAFAVIPVLAYYFLAYGDLLSNKFLYCCPMEKRALLKNL 197

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
            R V KV+    LG  ++++  G++      + G+   + L  + A++ +IP    +   
Sbjct: 198 GRDVDKVLGKYILGQLLLSLLVGIMTFIGMLILGIKFPLLLAFLNALLNIIPYFGAVLGA 257

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             +I + +         + L   I   I    + P +    I +  +     L+ G +  
Sbjct: 258 IPAIVVALVEGPNKILWVILTFLIIQQIEGNLIAPKITAESIDMHPILIIILLLIGEQIG 317

Query: 324 GLLGLFIGPVLMALIAVIWKES 345
           GLLG+     +  +I V++ + 
Sbjct: 318 GLLGMVFIVPIAVVIKVLFDDW 339


>gi|238020241|ref|ZP_04600667.1| hypothetical protein GCWU000324_00116 [Kingella oralis ATCC 51147]
 gi|237868635|gb|EEP69639.1| hypothetical protein GCWU000324_00116 [Kingella oralis ATCC 51147]
          Length = 395

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/335 (14%), Positives = 122/335 (36%), Gaps = 12/335 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           ++++  ++   +FL G   P + A ++ +   P+ S   +         ++   +  + L
Sbjct: 55  FLLIAFLVAFFHFLGGILTPFIIAAVLAYILNPLVSKLEAH-GIKRGRASMWVMLFALFL 113

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQ 131
               LL +    + +++ ++ K+            ++    +P        +    +   
Sbjct: 114 LTALLLVIVPMLVQQLQSIIQKL-------PQFADYIHRTALPWFNQKFGHYLSLNNETA 166

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +  + S        I        + G        +I+ + + L++F  D          L
Sbjct: 167 ANWLRSNAQTIQTRIQQALPALMQSGASLATSLSNIVLLPLLLYYFLLDWARWEAGATEL 226

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +   + +I+  +  V+     G  ++ +  G + G+   L G+ S  A+G++  I+
Sbjct: 227 VPRRYLDTYTRITGNMNTVLGEFLRGQLMVMLIMGTLYGTGLMLTGLESGFAIGMVAGIL 286

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGGPIKLPF 309
             +P     +   ++    +         + +W    +  F+    + P +VG  I L  
Sbjct: 287 VFVPYLGAFTGLLLATLAALLQFGSWHGLVSVWAVFAVGQFLESFLITPKIVGDKIGLSP 346

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
               F L+   + +G +G+ +   L A+  V+ +E
Sbjct: 347 FWVIFSLMAFGQLLGFVGMLVALPLAAVCLVLLQE 381


>gi|297561590|ref|YP_003680564.1| hypothetical protein Ndas_2641 [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296846038|gb|ADH68058.1| protein of unknown function UPF0118 [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 408

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/315 (12%), Positives = 97/315 (30%), Gaps = 13/315 (4%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           P  +     +         +  + V+ L +V L  L    + ++   VS++    +  + 
Sbjct: 66  PAVNWLHRHRWPR-GPATGLVMLLVLALTVVFLSLLGSMLVGQILAFVSEIPAMIRAAL- 123

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
              W++      ++       +S    L     +         I       G   L    
Sbjct: 124 --AWVNTTFDTSYSPTTLLNEISSASGLIEQYASG--------IANNVWGAGTTVLALLF 173

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           + + + +  F+   DG    + + S+          +   I             ++A+  
Sbjct: 174 NALTIALFTFYLCADGPRFRRVICSVLPPRTQREVLRAWEIAITKTGGYLYSRALLALVC 233

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLW 284
                       +P   AL +   +++  IP         V + + +   I+ A  + ++
Sbjct: 234 SGAHYVVLVALDIPFAFALALWVGVLSQFIPTVGTYIGGVVPVLVALMEGIWPAVWVLVF 293

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             +     +  L+P +    + +     F  ++ GV  +G  G  +   + A +      
Sbjct: 294 IVVYQQFENYLLQPRITARTLDMHPAVAFGSVLAGVAILGAPGALLALPMGASMQAFLGT 353

Query: 345 SIMAIKENKEKISSN 359
            I   +  +  + S+
Sbjct: 354 YIRRYEVAEHPLLSD 368


>gi|186686308|ref|YP_001869504.1| hypothetical protein Npun_R6282 [Nostoc punctiforme PCC 73102]
 gi|186468760|gb|ACC84561.1| protein of unknown function UPF0118 [Nostoc punctiforme PCC 73102]
          Length = 361

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 56/319 (17%), Positives = 114/319 (35%), Gaps = 18/319 (5%)

Query: 37  ALIIGFTS-WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSK 95
             I+ F   +P+   F  +   + T   +I  ++ + LF +  + L    + +  +L++K
Sbjct: 44  GAILAFLLNYPV--KFFERARITRTQAVIIVLLATLTLFGILGVTLVPLIIDQTIQLLNK 101

Query: 96  VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT--NGIDFIPRFA 153
           +          P WL      +   E+  K    P  L+++S        N +  +   A
Sbjct: 102 I----------PDWLGASQANLEQFEMLAKQRRLPIDLRVVSSQINANIQNLVQQLASGA 151

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
             F    L     ++ +I+  F+    G  +   L +L             R+     ++
Sbjct: 152 VGFAGTLLSGLFDVVLVIVLAFYMLLYGDRVWYGLINLLPSNIGEPLTASLRLN---FQN 208

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
            FL   ++ +   L L   + +  VP  +   ++  I  +IP         +   L++  
Sbjct: 209 FFLSQLLLGLFMMLTLTPIFLVMKVPFALLFAILIGISELIPFIGASLGIGLVTILVLLQ 268

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
           N + A  + +   +   + D  L P L+G  I L  +  F  ++ G    GLLG  +   
Sbjct: 269 NWWLAVQVAIAAILMQQLKDNLLAPRLLGNFIGLNPIWIFVAILMGFEIAGLLGTLVAVP 328

Query: 334 LMALIAVIWKESIMAIKEN 352
           +   I   +         N
Sbjct: 329 IAGTIKGTFDAIKSGKPSN 347


>gi|297626025|ref|YP_003687788.1| Hypothetical membrane protein [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296921790|emb|CBL56350.1| Hypothetical membrane protein [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 424

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 55/332 (16%), Positives = 105/332 (31%), Gaps = 24/332 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESS 59
           +    P+  + ++ M  I  S++  +      APV   L +    +PIYS    +K   +
Sbjct: 74  QPRWLPRMSVIFIAMIGIAGSIWLFRQLSWLLAPVFLGLNLVIAFYPIYSGLTRRKWPRA 133

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
              A++  ++++ + I+ +  + +     +  + S V         + ++L        A
Sbjct: 134 -LAAIVMALALLSVVILAVASMAWAVGTLIGAIPSYVPRIQAMYGDLMQFLVQHHISADA 192

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              +   +     L         +     +   +   G             +  +     
Sbjct: 193 VSGFYSRIDPNNVL---------SALTGVLGSISGSIGAGT--------VALTTILMLLV 235

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D     ++L  + E   P     I        R   + M   AI  GL       +  VP
Sbjct: 236 DSVGWKRRLG-MVEVGHPRAIGAIRDFAHGTRRYWLVSMVFGAIMAGLNA-IELKILNVP 293

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
                 V+T I   IP  G   +     I  L+     NA  L     +  +IV    +P
Sbjct: 294 LMGVWVVLTFITTFIPSVGFFFAMVPPVIVALVVNGWQNALWLMAIYFVTTWIVQGFFQP 353

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              G  + +    +F  L+      G LG  I
Sbjct: 354 KFTGNAVGVNITTSFISLLFWAWVFGPLGALI 385


>gi|237653422|ref|YP_002889736.1| hypothetical protein Tmz1t_2759 [Thauera sp. MZ1T]
 gi|237624669|gb|ACR01359.1| protein of unknown function UPF0118 [Thauera sp. MZ1T]
          Length = 368

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/322 (14%), Positives = 115/322 (35%), Gaps = 16/322 (4%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
               P +   +  +   P  +  ++++   +  + ++               L     L 
Sbjct: 30  PILTPFVVGAVFAYICDPAVNWMVARRVPRALAVLLVILAL---------GLLLIALALI 80

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           +  +V +  +     +P    + ++             +               T+  + 
Sbjct: 81  LVPMVYREGVLLVRRLPELVQMFNLNVAPLLEARLGVDIRLNAEQFQQLIADNWTSAQEL 140

Query: 149 IPRFASRF---GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +P   +     GM  L +  +++ + + +F+  ++   I  +L+ +    +    K++  
Sbjct: 141 VPAVLAHLKTGGMAVLGFLANVVLIPLVMFYLLQEWPRILDELERIVPRPWVDGTKRVLG 200

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP---GGAPISF 262
            +  V+     G   + +   +   +  WLAG+   + +GV+T ++  IP    G  +  
Sbjct: 201 DIDSVMSEFLRGQLSVMLLLAVFYSAGLWLAGLNFWLPVGVLTGLLVFIPYVGFGGGLIL 260

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             V+  L  +G       + +  A+   +    L P+LVG  I L  L   F L+   + 
Sbjct: 261 AIVAALLQAQG-WPPLAGVAIVYALGQVVESFVLTPYLVGERIGLHPLAVIFALMAFGQL 319

Query: 323 MGLLGLFIGPVLMALIAVIWKE 344
            G +G+ +   + A + V  +E
Sbjct: 320 FGFVGVLVALPVSAALLVGLRE 341


>gi|182679902|ref|YP_001834048.1| hypothetical protein Bind_2995 [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182635785|gb|ACB96559.1| protein of unknown function UPF0118 [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 377

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/340 (15%), Positives = 97/340 (28%), Gaps = 35/340 (10%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + +   L   Y       P++ A+++     P                A    ++V+   
Sbjct: 41  LFLIAALSGAYVAAEVVLPLIFAIVLKLLLQPGMRFLERYYIPRH-LAAFFLILAVLGAI 99

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +     +                       P   W   +  G+         LSHP  L 
Sbjct: 100 LGIGAAVSG---------------------PSKAWFEHLSEGLPLLRERLLFLSHPFELL 138

Query: 135 I----------LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                       S     +                   +   +  MI+ LFF    G   
Sbjct: 139 DTLRNKMDGMGHSGQLSVSLAKSLSESLQETLLRTTRHFASGLFEMILILFFLLVFGDMF 198

Query: 185 SQQLDSLGEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
            ++L  +            +S+ +   I +  L +TI+    GL      W  GV   + 
Sbjct: 199 LRRLVEILPRFKDKRQVVDLSQQIESNISAYLLTITIMNAAVGLATAIVMWACGVGDPIL 258

Query: 244 LGVITAIMAMIPGGAPISFTAV--SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            G+I  ++  +P   P     V     LL    ++ A        +   +  + + P L+
Sbjct: 259 WGLIAFLLNFLPIMGPFFGVGVFLVAGLLTIPQLWLALLPAGLYLLIHIMEGELITPMLL 318

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                L  +     L+      G+LG  +   L+A+  +I
Sbjct: 319 ARRFTLNPVLVIVSLIFWFWMWGVLGAILSVPLLAMTKII 358


>gi|260062550|ref|YP_003195630.1| hypothetical protein RB2501_13204 [Robiginitalea biformata
           HTCC2501]
 gi|88784117|gb|EAR15287.1| hypothetical protein RB2501_13204 [Robiginitalea biformata
           HTCC2501]
          Length = 366

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 57/351 (16%), Positives = 124/351 (35%), Gaps = 14/351 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +     + ++   LY ++   A VL A ++     P    F  + +  +T   V+  +
Sbjct: 12  RAVFILAAIVLVAYFLYLIRSVIAYVLIAAVVALMGRPAVLFFRQRLKFPNTLAVVVVVL 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L    +         + + L   ++   +    +     +I     AS      + 
Sbjct: 72  LMIGLLAGIIALFIPVITEQGRNL--SLLDMEELQKDLNSLYLEITEYFGASP---ASID 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                  L +  L+   I FIP   +    +  +  + +  ++   FFF +D       L
Sbjct: 127 ALIEKTDLEKNVLEGLDIGFIPDMLNSIVGLLSNLSVGLFSVLFIAFFFLKDSRLFQNSL 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +L          +    +  ++   F+G+        ++      L G+   V +  + 
Sbjct: 187 IALVPDDKEGRVLQSLEKIKGLLSRYFVGLLGQIFVLFVIYTVVLLLVGIEDAVVIAFLC 246

Query: 249 AIMAMIPGGAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELF-----IVDKTL-RPF 299
           A+  +IP   PI    + I L +    G+ F++  L   G + L      +VD    +P 
Sbjct: 247 ALFNIIPYVGPIIGGVIMIILTMTSNLGSDFSSVILPDVGWVFLGLTIGQLVDNFFSQPV 306

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +    ++   L  F  ++      G++G+ +       I VI KE +   K
Sbjct: 307 IFSNSVRSHPLEIFLVIIIAGLLFGVMGMIVAVPGYTAIKVILKEFLAENK 357


>gi|217964951|ref|YP_002350629.1| conserved integral membrane protein [Listeria monocytogenes HCC23]
 gi|290893492|ref|ZP_06556476.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|217334221|gb|ACK40015.1| conserved integral membrane protein [Listeria monocytogenes HCC23]
 gi|290556993|gb|EFD90523.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|307570489|emb|CAR83668.1| membrane protein, putative [Listeria monocytogenes L99]
 gi|313609663|gb|EFR85166.1| membrane protein YdbI [Listeria monocytogenes FSL F2-208]
          Length = 348

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/345 (15%), Positives = 115/345 (33%), Gaps = 25/345 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  ++ + LY L+     +L   I  F    + +  + +       +
Sbjct: 5   EKLKENDTARRVLVFVLLGIVLYLLRSMIDLILLTFIFAFLVTRLENVILKRVRIPRKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V     V ++      + ++ +LV  +V    +  P    +     G      
Sbjct: 65  VIVLYSLVAIFLYVAIVHFLPILINQISQLVDSLVKLYNN--PSDNTIVKWIVGFLKESN 122

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             K+L                 G+DFI    S  G + L + L++I  +    FF  +  
Sbjct: 123 IQKYLQ---------------TGVDFIIASLSGIGSVGLSFFLALILSL----FFSLEKE 163

Query: 183 SISQQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            ++              +K+     +              +IA+   ++   A +L   P
Sbjct: 164 RVTSFTGQFMTSKVGFIFKEAAFFGKKFVSTFGVVLEAQLMIALVNTVITTIALYLMDFP 223

Query: 240 SHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             ++L ++  ++ +IP    I     + +     G   +   + +   I   I    L P
Sbjct: 224 QLLSLSIMVFVLGLIPVAGVIISCIPLVLIAYSVGGFQDVVYILITVVIVHAIETYILNP 283

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L+     LP   TF  L+      G+ GL +G  +   +  I +
Sbjct: 284 KLMSSKTNLPVFYTFIILIFSETFFGVWGLIVGIPVFVFLLDILE 328


>gi|293375781|ref|ZP_06622051.1| putative membrane protein [Turicibacter sanguinis PC909]
 gi|292645558|gb|EFF63598.1| putative membrane protein [Turicibacter sanguinis PC909]
          Length = 386

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/335 (16%), Positives = 122/335 (36%), Gaps = 19/335 (5%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEE----------SSTFLAVIATVSVMCLFIVPLLF 80
            +P+L A +I +  +          ++          S+     I+ + +  L    +  
Sbjct: 53  ISPILYAFVISYILYRPLMFIERNFKKGFKKISKKGISNGMARTISILLLAILVFFAIYT 112

Query: 81  LFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
           L       + E +  V+ +       +  W++++   + A  +  + +            
Sbjct: 113 LINSIFPPLIENIDTVMQSLPNFQTIITEWINNLTPYIKAVSITNEQIQEFTLFLTNLLK 172

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG----EHL 195
            L TN ++      +          ++ +  II  F+F +D  +I   +D LG    +  
Sbjct: 173 GLLTNALN----IGTGVVTNLTGLVINTLATIILTFYFLKDKETIFAGIDKLGTVIFKPQ 228

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
             A  K     + +V  +  +G  I A   G+       + G P  + +G+I  +  +IP
Sbjct: 229 IKAKIKHFLHDLHEVFGNFIVGQLIDAAIVGVASSLLLLIIGHPFALLIGLIAGVTNIIP 288

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI   A+++ L +  ++      F+       I    ++P ++G  + L  +  F  
Sbjct: 289 YVGPIIGAALALILGLFTSVKLGILGFILLIAYQQIDGYFIQPKILGDSVGLAPVWIFIA 348

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++ G   +G LG+ +   + AL  V        ++
Sbjct: 349 ILIGGNYLGALGMILSVPIAALCKVYIDRRFQKLE 383


>gi|302380731|ref|ZP_07269196.1| putative membrane protein [Finegoldia magna ACS-171-V-Col3]
 gi|302311674|gb|EFK93690.1| putative membrane protein [Finegoldia magna ACS-171-V-Col3]
          Length = 395

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 104/297 (35%), Gaps = 22/297 (7%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
              +L  +I+ +   P+   F +K     +F  +I  V V+ L I+  + +    + ++K
Sbjct: 75  INTLLIGIILSYIINPLVKYFENK-GIRRSFAILIIYVIVIFLIILLGMIVVPQTIQQIK 133

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF-- 148
           +++          I +P +++DI   +  ++   K      ++  +    ++T       
Sbjct: 134 KMI----------ISLPGFMADI--SIKVNDFNRKIFKEYPNVSKIMSNAMQTVNQKLGT 181

Query: 149 -------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                  +               L II + +  F+   D       +     +     + 
Sbjct: 182 IQTSILDMLSQTGNITGSIFTNLLRIILIPVVSFYMLLDKEKCIDFIMGFIPNKNKDKFL 241

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            +   + K       G  I+AI  G++   A  L  V   + +G++T +  +IP   P  
Sbjct: 242 SVCNDMDKAYSEFIRGRLIMAIFVGVLTAIALILMRVDFAIIIGILTMVGDIIPYIGPFI 301

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
               +  L    +   A  + +      +I +  L P L+G  I +  L     L+ 
Sbjct: 302 AVTPAFILAFLDSPIKAVVVVIVFVSIQWIENNILAPKLLGSKIGINPLLVIVSLII 358


>gi|260891172|ref|ZP_05902435.1| conserved hypothetical protein [Leptotrichia hofstadii F0254]
 gi|260859199|gb|EEX73699.1| conserved hypothetical protein [Leptotrichia hofstadii F0254]
          Length = 299

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 102/302 (33%), Gaps = 16/302 (5%)

Query: 53  SKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD 112
            K   + TF  ++       +F+  +L +      ++  L + ++   +           
Sbjct: 14  KKIRLNRTFAILLVLSIFFVIFLYIILTIVPIITRQVSSLTNFLLKNQEKLQ-------- 65

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
                        +    +S  + S+  + +N I  +    S     F    ++ IF I+
Sbjct: 66  ----NNFFGFLESNNIDLRSSLMNSKDVIVSNAITVVSSSFSLISSTFSLLFMTPIFTIM 121

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
            +F +     +I   +  +  ++       + + + + I    L   + ++  G+V    
Sbjct: 122 LIFSY----DNIENGVKRILRNMNREDIIVLVKHMDETIGKYILVTALDSMIVGIVSFVI 177

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           ++   +   +   +I     +IP   P      +I      +      + +   I   I 
Sbjct: 178 FYFLKMDYSMLFSIIVGFGNVIPFIGPFIGLIPAILYAFTKSFKLVILIVVLITIVQTIE 237

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              ++P+L G  +++  + T   ++ G    G+ G F+   +  +I + W        E 
Sbjct: 238 ANIVKPWLTGKSVEMHPITTLLVVLVGGALFGIGGAFVAIPVYIVIKLTWLFCWKKYMEK 297

Query: 353 KE 354
            E
Sbjct: 298 NE 299


>gi|220925388|ref|YP_002500690.1| hypothetical protein Mnod_5545 [Methylobacterium nodulans ORS 2060]
 gi|219949995|gb|ACL60387.1| protein of unknown function UPF0118 [Methylobacterium nodulans ORS
           2060]
          Length = 375

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/317 (15%), Positives = 108/317 (34%), Gaps = 8/317 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           ML  +  +   ++ +++  LY L+    P ++   + +   PI               A 
Sbjct: 1   MLQRRATIVLALLAVVVFLLYQLRDVLVPFVAGAALAYVLDPIADRLERLGIGR--LAAT 58

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
              ++V  L +V  L +        +++ + V         +   ++D  G +       
Sbjct: 59  FTILAVFVLLLVLALIIAVPLA--ARQIGALVATLPGTVSRIQAIIADHAGPLLERAGGA 116

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L   Q+          +  ++ +    S      +     ++   +  F+   D   +
Sbjct: 117 GTLQDLQASVGRLVGQAGSWIVNLVGSLWSG-SQAIVGILSLLVVTPVVAFYLLVDWDRM 175

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              LD           + ++R +   I S   G +++ +  G       WL G+   V +
Sbjct: 176 IATLDGWVPPRHRDTVRMLARDIDAAITSFIRGQSLVCLLLGTFYAVGLWLIGLNFGVLI 235

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLV 301
           G++   +  IP  G+   F   +   +++        L   G   +  F+    L+P LV
Sbjct: 236 GMMAGFLTFIPYVGSLTGFLLSAGVAVVQFWPDWTWILATLGVFLVGQFLEGNVLQPKLV 295

Query: 302 GGPIKLPFLPTFFGLVG 318
           G  ++L  +   F L+ 
Sbjct: 296 GDAVRLHPVWLMFALLA 312


>gi|270294583|ref|ZP_06200785.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270276050|gb|EFA21910.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 371

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/334 (16%), Positives = 112/334 (33%), Gaps = 15/334 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY-G 85
           L G   P   A +I +  +P+ + F  +    +  +++   +  + +      +L     
Sbjct: 31  LSGVLLPFFIAWLIAYLIYPLVTFFQYRLRLKNRVISIFCALFSILIVGGTAFYLLVPPM 90

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           M E   +   V+    +G                SE   +++      ++  E  +    
Sbjct: 91  MDEFVRVKDLVIDYFSNGTHDGN------VPKTLSEFLRENIDTQFVTQLFKEENMLNAI 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALF--FFYRDGFSISQQLDSLGEHLFPAYWKKI 203
            + +PR  S              F +I L+  F   D  SI++    L    +  +   +
Sbjct: 145 KETVPRLWSLLSESVNLLFSFFTFFLILLYIVFILLDYESIAEGWTHLVPQKYRPFVVSV 204

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
              V   +   F G   +A+  G++    + +   P  + LG+    + ++P    I F 
Sbjct: 205 MNDVKDGMNRYFRGQAFVALCVGILFSIGFLIIDFPLAIGLGLFIGALNLVPYLQIIGFI 264

Query: 264 AVSIYLLI----KGNIFNATC--LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
              +  ++     G  F            I   I D  + P ++G    L        L 
Sbjct: 265 PTIVLAILKAADTGGNFWIIIASALAVFIIVQAIQDGFIVPRVMGKITGLNPAIILLSLS 324

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
                MG+LG+ I   L  L+   ++  I+  ++
Sbjct: 325 IWGSLMGMLGMIIALPLTTLMLSYYQRFIINREK 358


>gi|90022219|ref|YP_528046.1| succinyl-diaminopimelate desuccinylase [Saccharophagus degradans
           2-40]
 gi|89951819|gb|ABD81834.1| protein of unknown function UPF0118 [Saccharophagus degradans 2-40]
          Length = 356

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 55/317 (17%), Positives = 113/317 (35%), Gaps = 12/317 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
            AP+++A+II F    I +   +    S      IA + +    +V L++L      ++ 
Sbjct: 39  LAPMIAAVIIAFLMQGIVARLKTW-GVSHIVAVSIAFLILAGSLVVMLIYLLPALWQQVL 97

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L ++     + G  +   L      +   +   + +   ++    +     +  +  +P
Sbjct: 98  NLFAEAPRMLKDGQSLLLLLPQEYPALITEDQVKQLMGALRTDLAQAGQTAVSFSLAQLP 157

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                   I +   + ++ + I +FFF +DG  +   + S+     P   +KI R + + 
Sbjct: 158 --------IIVAALIYLVLVPILVFFFLKDGQQMLGWVASVLPRERPV-MQKIWREMNQQ 208

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTA-VSIY 268
           I +   G  I  +  G V    + L G+   + LG+      ++P  GA I      +I 
Sbjct: 209 IANYVRGKVIEIVIVGGVSSLTFSLLGLRYALLLGIAVGFSVLVPYIGAAIVTLPVAAIG 268

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
               G       + +   I   +    L P L    +K+  +     ++      G  G+
Sbjct: 269 FFQFGWGTEFLYIMIAYTIIQALDGNVLVPLLFSEAVKMHPVMIILSVLVFGGFWGFWGV 328

Query: 329 FIGPVLMALIAVIWKES 345
           F    L  L   I    
Sbjct: 329 FFAIPLATLCKAILNAW 345


>gi|113969827|ref|YP_733620.1| hypothetical protein Shewmr4_1485 [Shewanella sp. MR-4]
 gi|114047055|ref|YP_737605.1| hypothetical protein Shewmr7_1550 [Shewanella sp. MR-7]
 gi|113884511|gb|ABI38563.1| protein of unknown function UPF0118 [Shewanella sp. MR-4]
 gi|113888497|gb|ABI42548.1| protein of unknown function UPF0118 [Shewanella sp. MR-7]
          Length = 368

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/328 (15%), Positives = 109/328 (33%), Gaps = 23/328 (7%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
            + IIL  +        P + +  I     P        +     +LAVI  +  + L  
Sbjct: 19  FVVIILAGIKAASPIVVPFVLSSFIAVICNPAIGLMTKYRV--PKWLAVILLMGFIVLMG 76

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + L  L    + E  + + +                           W  H     +++I
Sbjct: 77  LWLASLVGSSINEFSKQLPQYRDQLVEQFS-----------------WVLHKLQALNIQI 119

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
             E  L            +       +   ++  +I+ + F   +  S+ ++L  L    
Sbjct: 120 SKEQVLAYFDPGMALSMTTNMLSGVGNVMANLFLIILTIVFMLFEAQSLPKKL-HLALDD 178

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                ++I R +  V +   +   ++++  GL++G    + GV   +   VI  +   IP
Sbjct: 179 PDMRLQQIDRFLQSVNQYMVIKT-LVSLATGLIVGVGLAVIGVDYALLWAVIAFLFNYIP 237

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G+ I+     +   I+     A    +       ++   + P  +G  + L  L  F 
Sbjct: 238 NIGSIIAAIPAVLLAFIQLGPAAAGGTAMLYVGANMVMGNVVEPKFMGRGLGLSTLVVFL 297

Query: 315 GLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            L+     +G +G+ +  P+ M +   +
Sbjct: 298 SLIFWGWLLGSVGMLLSVPLTMVVKIAL 325


>gi|307245623|ref|ZP_07527709.1| Permease PerM [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307254581|ref|ZP_07536414.1| Permease PerM [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307259035|ref|ZP_07540765.1| Permease PerM [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306853325|gb|EFM85544.1| Permease PerM [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306862469|gb|EFM94430.1| Permease PerM [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306866702|gb|EFM98560.1| Permease PerM [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
          Length = 350

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 59/354 (16%), Positives = 118/354 (33%), Gaps = 15/354 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           ++   +PQ +    I+ I    +YF      P+L A++  +   WPI       K     
Sbjct: 7   KQKFNDPQAVALLGILLIGFGIIYFFSDLIMPLLIAIVFAYLLEWPIKLLTQKLKFPR-- 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEM-KELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
              +++ + V+  FI    FLF   +  +  + V+ +         +  WL  +P     
Sbjct: 65  ---LLSLILVLGSFISLSTFLFVVMLPTLWNQAVTFIRDLPSMLNLLNAWLEALPEHYPE 121

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              +    S    LK     F ++     +    S  G+    + + ++      FF  +
Sbjct: 122 LIDYAMLDSLMNMLKEKILGFGESLLALSVNSIISLVGLGIYAFLVPLMV-----FFLLK 176

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D     +                +   + + I +   G  +  +  G+V  + +    + 
Sbjct: 177 DKPLFVRGFIKFLPK-NRRLAANVWFEMQQQIANYIRGKVLEILIVGIVTYAIFLFFDLR 235

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLR 297
             + L V   +  +IP  GA +    V++  L   G   +   L L   I   +    + 
Sbjct: 236 YPLLLSVAVGLSVLIPYIGAVLVTIPVALVALFQFGLSTDFYYLLLAFVISQLLDGNLVV 295

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           PFL    + L  L     ++      G  G+F    L  L+  +        +E
Sbjct: 296 PFLFSEAVNLHPLTIIVAVLIFGGLWGFWGVFFAIPLATLVKAVINALPSNEEE 349


>gi|257466379|ref|ZP_05630690.1| permease [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917535|ref|ZP_07913775.1| permease [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691410|gb|EFS28245.1| permease [Fusobacterium gonidiaformans ATCC 25563]
          Length = 373

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/338 (14%), Positives = 121/338 (35%), Gaps = 15/338 (4%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           FF P++ A+ +    +P+      K         ++  + +     + +L +       +
Sbjct: 39  FFIPLIWAMFLSILLYPLQKFLEEKLHLKRELALIVVLILLGLCVSLFMLTVIPQVSKSI 98

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           KEL        Q    + + + +    + +       L   ++  + + +    + I  I
Sbjct: 99  KEL-------QQIYPYMEKRVGEFLDKILSLLHKQGLLLMNETEIMKAISEYTQDNIQKI 151

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALF---FFYRDGFSISQQLDSLG----EHLFPAYWKK 202
            +          D    +    I LF   F         + ++ +     +        +
Sbjct: 152 QQIGISIFWNVFDVTFGLANFFIGLFLACFILLKPEDFVKVIERVIYLNVKKEKALNIIE 211

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           I R    +  +  +G  +++I   L++    +L   P  V   ++  +  MIP    +  
Sbjct: 212 ILRKSKDIFLNYVVGRLLVSIIVALIVFLILFLTKTPYPVLTALLFGVGNMIPYLGVLVA 271

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
           + VS +L++    +    L     +   +    + P +VG  + L        ++   + 
Sbjct: 272 SLVSGFLILIFAPYKIGYLIFAIVLSQALDGFIIGPKIVGDKVGLNSFWVVVAILLCGKL 331

Query: 323 MGLLGLFIGPVLMALIAVIWKE-SIMAIKENKEKISSN 359
           MG+ G+F+G  +  +I +I++E     +++ KE I  N
Sbjct: 332 MGIAGMFLGVPIFCIIKLIYQEKWRAYVEKEKEGIEEN 369


>gi|307151406|ref|YP_003886790.1| hypothetical protein Cyan7822_1521 [Cyanothece sp. PCC 7822]
 gi|306981634|gb|ADN13515.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7822]
          Length = 385

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 56/302 (18%), Positives = 108/302 (35%), Gaps = 13/302 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFL--AVIATVSVMCLFIVPLLFLFYYGMLE 88
           F  +L A ++ F      +   +K            + T+ +     V L+ L Y    +
Sbjct: 55  FVIILLASVVAFLLSYPVNWLENKGINRPQAAIGVFLVTLLIFLAVAVTLVPLAYNQAQQ 114

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           +   + + + + QH       L  +   +    L          +     + L+T G   
Sbjct: 115 LVARLPEWLDSGQHQ------LMRLNEQVDLWGLPISLDGLIAQINSRLASELQTLGGKT 168

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +   A    +  +   L ++  II  F+       I Q L           + +  R   
Sbjct: 169 L-NLAVSLTVFTVVKSLDVLLTIILTFYLLLHTRDIWQSLIEWLPKPIQGPFSQTLR--- 224

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
              ++ FLG  I A    + L S++ +  VP  +  G+   +MA+IP G       V++ 
Sbjct: 225 SSFQNYFLGQIISATCMAVGLVSSFLVLKVPFGLLFGLTIGVMALIPFGGSAGIVTVTL- 283

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L+   +I  A  +     +   +V+  + P ++G    L        L+ G R  GLLG+
Sbjct: 284 LIALRDIKLALQVLACALVVQQVVENGIAPRILGSVTGLNPFWILLALLSGARIGGLLGV 343

Query: 329 FI 330
            +
Sbjct: 344 IV 345


>gi|187934848|ref|YP_001885260.1| permease [Clostridium botulinum B str. Eklund 17B]
 gi|187723001|gb|ACD24222.1| putative membrane protein [Clostridium botulinum B str. Eklund 17B]
          Length = 382

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 52/327 (15%), Positives = 118/327 (36%), Gaps = 5/327 (1%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFIS--KKEESSTFLAVIATVSVMCLFIVPLLFL 81
           +  L+ F      A I+ F             K +       V+  ++ M L  + + F+
Sbjct: 44  IVILQPFIIGFSIAYILNFILKFYEKKLNKYSKLKAKRGLGLVLTYITAMLLVGLFIQFV 103

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               +  +  LV+ V           ++++ +   +  SE +   +++  +  I     +
Sbjct: 104 LPQLIQSIIGLVNDVPKFINEST---KFINKLMLDLNISEEYLPLINNNFNEFINYIIKI 160

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            TN +  +  F ++      +  L +I  I  L    +      +   ++          
Sbjct: 161 ATNLLPVLGSFVTKIASSIWNIVLGVIISIYLLIDKEKFCAMSKKVTYAIFFKNAAEKII 220

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +I+           +G  + +   G++      +  +P  + + VI  I  +IP   P  
Sbjct: 221 EITHRSNDTFGKFLMGKILDSFIIGILTFVILTIFRIPYAILISVIVGITNIIPFFGPFI 280

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               S+ +++  +   A    L   +   I    + P ++G  I +      F ++   +
Sbjct: 281 GAIPSVIIILFVSPIKALWFLLIILVIQQIDGNIIGPKILGDSIGISAFWILFSILFAGK 340

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMA 348
            +GL+G+ IG  L A++  I KE + A
Sbjct: 341 FLGLIGMIIGVPLFAVVYSIIKEIVEA 367


>gi|302537310|ref|ZP_07289652.1| conserved hypothetical protein [Streptomyces sp. C]
 gi|302446205|gb|EFL18021.1| conserved hypothetical protein [Streptomyces sp. C]
          Length = 426

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/325 (12%), Positives = 100/325 (30%), Gaps = 14/325 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L G    +L A  +     P  +   ++          +  + V       L  L     
Sbjct: 92  LIGLLVNILIAFFLALAIEPAVARMAAR-GMRRGLATFLVFLGVFVAGAGFLAMLGSMLA 150

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++ ++V          I             + ++     +          + +++ +  
Sbjct: 151 GQIIDMVEGFPGYLDSVIDSINR-------TFHTDFSRLEIQDSLLRSQWLQKYVQNSAS 203

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +   A+  G +F      ++ + +  F+F  DG  + + L S+          +   I
Sbjct: 204 GVLDVSATVLGGLF-----KLLTIFLFSFYFAADGPRLRRALCSVLPPAKQREVLRAWEI 258

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA-MIPGGAPISFTAV 265
                        ++A+  GL     + L  V    AL V   +++  IP        A+
Sbjct: 259 AVAKTGGYLYSRGLMALISGLAHYVLFVLLDVAYAPALAVWVGLVSQFIPTIGTYLAGAL 318

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            + +    + + A  +  +  I     +  L+P L    + +     F  ++ G   +G 
Sbjct: 319 PMLIAFAADPWYALYVLGFVVIYQQFENYVLQPKLTSRTVDIHPAVAFGSVIAGTALLGA 378

Query: 326 LGLFIGPVLMALIAVIWKESIMAIK 350
           +G  I    +A +       +   +
Sbjct: 379 VGALIAIPAVATLQAFLGAYVKRYE 403


>gi|75676096|ref|YP_318517.1| hypothetical protein Nwi_1905 [Nitrobacter winogradskyi Nb-255]
 gi|74420966|gb|ABA05165.1| Protein of unknown function UPF0118 [Nitrobacter winogradskyi
           Nb-255]
          Length = 379

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/334 (13%), Positives = 89/334 (26%), Gaps = 10/334 (2%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           L   ++       + + ++ G     +          + T   VI  +    L    ++ 
Sbjct: 37  LALAWYSSATLLMLFAGVLFGVFLTAMADLLRRVFGGNQTLRLVIVCILFTGLLSGVVVL 96

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWL----------SDIPGGMWASELWTKHLSHP 130
                  +   L S +     +                  +  P             + P
Sbjct: 97  GGATIAQQATALSSTLRAQLGNARDFLEKQGVDTSFLNVGARTPSTDNGVTPIPAPSASP 156

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                L +     +G   I     +      +   +   +I                +  
Sbjct: 157 SRGPKLPDASTIASGTGAIVSQTIKILARVFEGVGNFFIVIFLGLLLAAQPKVYRDGILR 216

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                       +   V + +R   LG         L+      L G+P  + LG IT +
Sbjct: 217 FVPRQRLPEAASLIDDVSETLRRWLLGQMATMASLFLLTWIGLTLIGIPGALVLGFITGL 276

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +  IP    I   A+ +   +   +      F+      F+    L P +    I +P  
Sbjct: 277 LTFIPNIGAILAGALIVLASLGSGLTAIISAFMLYLAVQFLEGNVLTPLIQRHAISIPPA 336

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             F   +      G+ GL +   L+A+I V+   
Sbjct: 337 TLFAAQIFLGVLFGVWGLALALPLIAVIKVVLNH 370


>gi|32473117|ref|NP_866111.1| hypothetical protein RB4458 [Rhodopirellula baltica SH 1]
 gi|32397796|emb|CAD73797.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
          Length = 342

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/261 (12%), Positives = 74/261 (28%), Gaps = 2/261 (0%)

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           L +    ++    + S    A Q        + +     + S      +           
Sbjct: 70  LVISTIAVVSCLTMYSFANSAAQKAAQFKDRIENSVQETFESVKQQPLVEDHLEEDAKLS 129

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
           + + ++G       A  F           + ++I   +F             +    +  
Sbjct: 130 SMMPSSGKSI--GLAKNFFASAFGGMADFLILLILSIYFALSPDKYRVGAIRMLPTGWRE 187

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
               +       +    +G  I     G+V G    + GVP  + LGV   ++  IP   
Sbjct: 188 KTSGLLSQSSTTLWRWMIGRLIAMALVGVVFGIGLAVIGVPMPLELGVFAGLVTFIPNIG 247

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            I+    ++ L  +        + +   +   I    + P +    ++LP        + 
Sbjct: 248 GIAAVVPALLLASQQGSTALISVLVLYLVIQTIESYLITPMVQEHQVELPPAMVILAQII 307

Query: 319 GVRTMGLLGLFIGPVLMALIA 339
           G    G  G+     + A+  
Sbjct: 308 GGLVFGFWGIVFATPMFAVSM 328


>gi|257057886|ref|YP_003135718.1| putative permease [Saccharomonospora viridis DSM 43017]
 gi|256587758|gb|ACU98891.1| predicted permease [Saccharomonospora viridis DSM 43017]
          Length = 403

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 100/298 (33%), Gaps = 13/298 (4%)

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A I  +  + +    L F+       +  L  KV   N     V  WL + P  +  ++
Sbjct: 76  AAAIVLIGGLGIVGALLTFVITQFTAGLPALQEKV---NSSLDRVNDWLINGPLHLRETQ 132

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +     +    L+              I   A        +    ++  ++ L FF   G
Sbjct: 133 IVDFVNNAVDFLQENQAA---------IADSALSTAGAVGEILTGLLLTLVVLVFFLAHG 183

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I   L                R     + S       +A+ +G+ +G   W+ GVP  
Sbjct: 184 QQIWNFLIRGVPAPVRKRVDLAGRRGFASLVSYVRATAAVAVVDGVGIGIGLWIVGVPLA 243

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           + L  +  + A IP    +   AV++ + L+      A  +       + +    L+P L
Sbjct: 244 IPLATLVFLGAFIPIIGAVVTGAVAVLVALVTNGFVTALIVLAIVVGVMQLEGNVLQPLL 303

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +G  ++L  L     +  G+ T G+ G  +   L+A++    K       E   +  +
Sbjct: 304 LGRAVRLHPLAVILAITAGMTTAGITGALLSVPLLAVLNSGIKSLAQEASEGDAEPEA 361


>gi|160889921|ref|ZP_02070924.1| hypothetical protein BACUNI_02354 [Bacteroides uniformis ATCC 8492]
 gi|156860309|gb|EDO53740.1| hypothetical protein BACUNI_02354 [Bacteroides uniformis ATCC 8492]
          Length = 371

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 55/334 (16%), Positives = 112/334 (33%), Gaps = 15/334 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY-G 85
           L G   P   A +I +  +P+ + F  +    +  +++   +  + +      +L     
Sbjct: 31  LSGVLLPFFIAWLIAYLIYPLVTFFQYRLRLKNRVISIFCALFSILIVGGTAFYLLVPPM 90

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           M E   +   V+    +G                SE   +++      ++  E  +    
Sbjct: 91  MDEFVRVKDLVIDYFSNGTHDGN------VPKTLSEFLRENIDTQFVTQLFKEENMLNAI 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALF--FFYRDGFSISQQLDSLGEHLFPAYWKKI 203
            + +PR  S              F +I L+  F   D  SIS+    L    +  +   +
Sbjct: 145 KETVPRLWSLLSESVNLLFSFFTFFLILLYIVFILLDYESISEGWTHLVPQKYRPFVINV 204

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
              V   +   F G   +A+  G++    + +   P  + LG+    + ++P    I F 
Sbjct: 205 MNDVKDGMNRYFRGQAFVALCVGILFSIGFLIIDFPLAIGLGLFIGALNLVPYLQIIGFI 264

Query: 264 AVSIYLLI----KGNIFNATC--LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
              +  ++     G  F            I   I D  + P ++G    L        L 
Sbjct: 265 PTIVLAILKAADTGGNFWIIIASALAVFIIVQAIQDGFIVPRVMGKITGLNPAIILLSLS 324

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
                MG+LG+ I   L  L+   ++  I+  ++
Sbjct: 325 IWGSLMGMLGMIIALPLTTLMLSYYQRFIINREK 358


>gi|91212964|ref|YP_542950.1| hypothetical protein UTI89_C3990 [Escherichia coli UTI89]
 gi|237703221|ref|ZP_04533702.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|91074538|gb|ABE09419.1| hypothetical protein YhhT [Escherichia coli UTI89]
 gi|226902485|gb|EEH88744.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|315286115|gb|EFU45553.1| conserved hypothetical protein [Escherichia coli MS 110-3]
          Length = 376

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 115/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +       +A   V
Sbjct: 41  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITIV 95

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E +S +   N+               +       + +   
Sbjct: 96  VVVMLIALTALVGVLAASFNEFISMLPRFNKE--------------LTRKLFKLQEMLPF 141

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++  
Sbjct: 142 LNLHMSPERILQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKM-R 200

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+  +
Sbjct: 201 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGIIVWLGLELMGVQFALMWAVLAFL 259

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA IS     I +L+   I+    +     +   ++   L P ++G  + +  
Sbjct: 260 LNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGMST 319

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 320 MVVFLSLLIWGWLLGPVGMLL 340


>gi|293377081|ref|ZP_06623291.1| putative membrane protein [Enterococcus faecium PC4.1]
 gi|292644297|gb|EFF62397.1| putative membrane protein [Enterococcus faecium PC4.1]
          Length = 345

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/356 (14%), Positives = 117/356 (32%), Gaps = 23/356 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  L  + I R  ++  ++  L+ ++     +L   I  +    +           +  L
Sbjct: 5   QRFLANEKIRRLTVLLSVIFVLFLVRSMITTILLTFIFTYLMIHLVQIIQRFVRIPTGIL 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A++    ++ L  +         + +  +++  V+   +H           P   +    
Sbjct: 65  AIMIYTLIVYLIYLAFTKYIPMLIHQTFDMIQSVIDFYEHQPKDAD-----PVLQYIHNY 119

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             ++    Q            NG      +    G + + + +S I      FFF  +  
Sbjct: 120 IERNDFFEQL----------QNGASIALGYLQDIGKLAVAFAMSFILS----FFFMIEKQ 165

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVP 239
                     +  F  +++ +     K + +         IIA+   L+   A    G  
Sbjct: 166 KTIFFSRLFLKSEFSWFFQDLYYFADKFVNTFGLVLEAQFIIALLNTLLTTIALAAFGFH 225

Query: 240 SHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             ++L ++  I+++IP    I     +S     +G I +   + +   +   I    L P
Sbjct: 226 QLLSLAIMIFILSLIPVAGVIISCIPLSFIAYSQGGIRDVVYILMTILVVHLIESYVLNP 285

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            L+     LP   TF  L+   R  G+ GL +G  +      + K   +     +E
Sbjct: 286 KLMSSKTDLPIFYTFVVLLVSERFFGVWGLIVGIPIFTFFLDVLKVKKIPNHSPRE 341


>gi|300690558|ref|YP_003751553.1| permease transmembrane transport protein (perM) [Ralstonia
           solanacearum PSI07]
 gi|299077618|emb|CBJ50253.1| putative permease transmembrane transport protein (perM) [Ralstonia
           solanacearum PSI07]
          Length = 356

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/316 (12%), Positives = 109/316 (34%), Gaps = 10/316 (3%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            P + A I+ +   P  +     +         +  + +  + +  +L +      E+  
Sbjct: 35  TPFVFAFILSYILHPGVAWLQRHRVPR-VLGVFLMILLLTVVAVALMLLILAVLQREIPA 93

Query: 92  LVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           +  ++  + ++    V   L+++   +             + +          + +    
Sbjct: 94  IREQLPGMLSKLNAAVTPRLAEMGVHVRFD------FPGLRKMLTEQLAASPEDVMSTAL 147

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
            +    G   +     +  + I +F+   D   + ++L+      +    ++++     +
Sbjct: 148 NYLRVSGSAAVQVLGIVFLVPIVMFYLLMDWNMLMRRLEGAVPRRWIDKTRELAAETDGL 207

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY-- 268
           +     G  I+ +   +   S   LAG    + +G+ T +   IP         ++I   
Sbjct: 208 LSQYLRGQIIVMLVLAVYYSSGLALAGFDVALPIGIFTGLAVFIPYIGFGIGLTLAILSA 267

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           LL  GN++    + +   +   +    L P LVG  I L  L     L+   +  G  G+
Sbjct: 268 LLQFGNLYGLLAVAVVYGVGQVLEGFYLTPRLVGERIGLHPLAVILALLAFGQLFGFFGI 327

Query: 329 FIGPVLMALIAVIWKE 344
            +   + A++ V  ++
Sbjct: 328 LLALPISAVLLVGLRQ 343


>gi|254520402|ref|ZP_05132458.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
 gi|226914151|gb|EEH99352.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
          Length = 355

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 55/351 (15%), Positives = 129/351 (36%), Gaps = 21/351 (5%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTS--------WPIYSSFISKKEESSTFLAVIAT 67
           I+ I+L  +  L+ F   + + +II             P+ + F+ KK +  +  A +  
Sbjct: 18  ILVILLGKISVLRNFINVIFAVVIIPIIFGVFLFYILKPLNNIFLKKKMKGGS-AASLTL 76

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +    +    + +   Y + +   L    +   +    +        G ++  + + K L
Sbjct: 77  LIFFFIAAGIMKYFGDYFIEQFINLKIIFLKIVEEKGNLYGVGEFFKGDIFKLDYYEKFL 136

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              Q   I             +           +     I+ +I+ +F+  +D   I + 
Sbjct: 137 GDIQKYAI------------LLASGLRGIFDKGMQLFSDILLIILIVFYLLKDEEKIKEN 184

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + ++    +      I +   +V+ S  LG   +A+   L++   Y + G+ S + L  +
Sbjct: 185 IVNIFPGKYKYKLYDIVKESDEVLSSYILGQAKVALSLALMVFIGYKIIGMASPLLLSSV 244

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           T ++A IP         +   + I         L +   I   +  + + P ++G  + +
Sbjct: 245 TFVLAFIPFVGFFISMIIPYIIAIALGWSMIIKLSILVIIAQTLKGRIIVPLIMGKTMNI 304

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             +   F +VG    +G +G F+   + +L  VI+K     ++E  ++   
Sbjct: 305 HPITDIFLVVGAASLVGPIGAFVVVPIYSLGKVIFKYFNKEVEEKLKEFKE 355


>gi|187920077|ref|YP_001889108.1| hypothetical protein Bphyt_5379 [Burkholderia phytofirmans PsJN]
 gi|187718515|gb|ACD19738.1| protein of unknown function UPF0118 [Burkholderia phytofirmans
           PsJN]
          Length = 650

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/328 (12%), Positives = 101/328 (30%), Gaps = 16/328 (4%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES--STFLAVIATVSVMCLFI 75
            +++  LYF +    P+  ++++ F   P+             S F+AV+  ++ +    
Sbjct: 32  VVVVCGLYFGRAVLIPITLSVLLSFLLAPLVQMLRRFHMGQLPSIFIAVLFALASLLAVG 91

Query: 76  VPLLFLFYYGMLEMKE----LVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSH 129
             +         ++ +    +  K+    +  +     L           S         
Sbjct: 92  ALITAQLVQLAADLPQYQEAIEQKIETVQEKTVGRADSLMSRAAVALQRVSPPKPNPPRP 151

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL-----SIIFMIIALFFFYRDGFSI 184
                  +    +   +        +     L   +     + I +++ +F   +     
Sbjct: 152 TGRAARNAPAVPQPVEVHEPAPTPMQLAQRALSPAIAPIETTFIVLVVTIFILLQREDLR 211

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + +   G          I+    ++ R  F+    + +  G V+     + GVP  +  
Sbjct: 212 DRLISLFGSRDLHRTTTAINDAAVRLSR-YFVAQLGVNLSAGGVIAIGLAIIGVPGALLF 270

Query: 245 GVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           GVI A++  +P         ++++L   I+     A    +   +   +  +   P L G
Sbjct: 271 GVIAALLRFVPYIGIWIAAILAVFLAAAIQPQWTMAVYTLILFIVVDVVAGQIAEPLLYG 330

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
               L  L      +      G +GL +
Sbjct: 331 HRSGLSPLAVVVAAIFWSWLWGPIGLVL 358


>gi|297529278|ref|YP_003670553.1| hypothetical protein GC56T3_0934 [Geobacillus sp. C56-T3]
 gi|297252530|gb|ADI25976.1| protein of unknown function UPF0118 [Geobacillus sp. C56-T3]
          Length = 353

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 68/188 (36%)

Query: 158 MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG 217
             F+    +++ +   +F+  +D   + + +  +    +        + V + +     G
Sbjct: 159 KSFIGSAATLLIIPFIVFYMLKDIDVLKKAVWYMTPKRWRGPGMTFLKDVDESLGGYIRG 218

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFN 277
              +    GL      WLAG+   + LG +  +  +IP   P+     ++ L    ++  
Sbjct: 219 QLFVCAAIGLAAALGLWLAGMDYPLLLGFVIGVTNIIPYFGPLIGAVPAVILAATVSLKM 278

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
              + +      F+    L P +VG  + +  L     L  G    G+LGL +     A+
Sbjct: 279 VVIVLVIIFTLQFLEGNVLSPLIVGKSVHMHPLVIMLALFAGGELAGVLGLILAVPTAAV 338

Query: 338 IAVIWKES 345
           + V     
Sbjct: 339 LKVAIAHW 346


>gi|239928556|ref|ZP_04685509.1| hypothetical protein SghaA1_10043 [Streptomyces ghanaensis ATCC
           14672]
 gi|291436882|ref|ZP_06576272.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291339777|gb|EFE66733.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 390

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/357 (13%), Positives = 113/357 (31%), Gaps = 22/357 (6%)

Query: 8   PQGIMRWMIMFIILVSLYFL--------KGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           P+ + R M++ + LV+++ L         G    VL A  +     P  S   ++     
Sbjct: 9   PRWLPRAMVLALALVAVFQLGSWAFHQLTGLLINVLIAFFLALAVEPAVSWMAAR-GVRR 67

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
                +  ++V+      +  L      ++ ++V                + +     + 
Sbjct: 68  GLGTFLVFLAVLIGAAGFVTLLGSMLAGQIIKIVEDFPEY-------LDSVINWFNTHFH 120

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           +EL    +           T+++ +    +   A   G +F    + +       F+F  
Sbjct: 121 TELRRVDIQEGLLRSDWLRTYVQNSATGVLDVSAQVLGGLFQLLTIGLF-----SFYFAA 175

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  + + L S+          +   I             ++A+  GL          VP
Sbjct: 176 DGPRLRRALCSVLPPARQVEVLRAWEIAVNKTGGYLYSRGLMALVSGLAHYVLLEFLEVP 235

Query: 240 SHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
               L V   +++  IP        A+ + +    + + A  + ++  +     +  L+P
Sbjct: 236 YAPVLAVWVGLVSQFIPTIGTYLAGALPMLIAFTVDPWYALWVLIFVVVYQQFENYVLQP 295

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            L    + +     F  +V G   +G +G  I    +A +       +       + 
Sbjct: 296 KLTSKTVDIHPAVAFGSVVAGTALLGAVGALIAIPAIATLQAFLGAYVKRYDVTDDP 352


>gi|117919992|ref|YP_869184.1| hypothetical protein Shewana3_1544 [Shewanella sp. ANA-3]
 gi|117612324|gb|ABK47778.1| protein of unknown function UPF0118 [Shewanella sp. ANA-3]
          Length = 368

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 109/328 (33%), Gaps = 23/328 (7%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
            + IIL  +        P + +  I     P        +     +LAVI  +  + L  
Sbjct: 19  FVVIILAGIKAASPIVVPFVLSSFIAVICNPAIGLMTKYRV--PKWLAVILLMGFIVLMG 76

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + L  L    + E  + + +                           W  H     +++I
Sbjct: 77  LWLASLVGSSINEFSKQLPQYRDQLVEQFS-----------------WVLHKLQALNIQI 119

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
             E  L            +       +   ++  +I+ + F   +  S+ ++L  L    
Sbjct: 120 SKEQVLAYFDPGMALSMTTNMLSGVGNVMANLFLIILTIVFMLFEAQSLPKKL-HLALDD 178

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                ++I R +  V +   +   ++++  GL++G    + GV   +   VI  +   IP
Sbjct: 179 PDMRLQQIDRFLQSVNQYMVIKT-LVSLATGLIVGVGLAVIGVDYALLWAVIAFLFNYIP 237

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G+ I+     +   I+     A    L       ++   + P  +G  + L  L  F 
Sbjct: 238 NIGSIIAAIPAVLLAFIQLGPAAAGGTALLYVAANMVMGNLVEPKFMGRGLGLSTLVVFL 297

Query: 315 GLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            L+     +G +G+ +  P+ M +   +
Sbjct: 298 SLIFWGWLLGSVGMLLSVPLTMVVKIAL 325


>gi|295837692|ref|ZP_06824625.1| integral membrane protein [Streptomyces sp. SPB74]
 gi|197695937|gb|EDY42870.1| integral membrane protein [Streptomyces sp. SPB74]
          Length = 365

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 114/338 (33%), Gaps = 21/338 (6%)

Query: 11  IMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           ++  ++  +  V ++    LK    P+L A++      P+YS  + +     +  A +  
Sbjct: 14  VLALLVTGVAAVGVWLCVELKTAVTPILLAVLGTALLRPLYSLLVRRAHVQRSLAAGLTC 73

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
            +V+         +    +   ++++  +  A                  W     T   
Sbjct: 74  AAVVAAVGGAGYIVTSAIVDNGQQILDSIRSAFDD------------AASWVGAGHTSLD 121

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               + + L   F  T     I   +     +   +  + +  ++ +FFF RD       
Sbjct: 122 DITHNARQLLNKFGGTAATGVINGLS-----VVGSFVATAVLALLLMFFFLRDAGRALHA 176

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L  L         + ++R   + +     G TIIA+ +   +     +  VP  + LG +
Sbjct: 177 LRELSPGGSSDLVEAMARRAYQAVAGFMHGTTIIALIDATFITIGLLVLRVPGALGLGAL 236

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + A IP  GA +S     +  L       A  +         +    L+P +    ++
Sbjct: 237 VFLGAYIPYLGAFLSGAVAILVALADRGFVIALWVLGVVLAVQVLEGHLLQPVVQSRTVQ 296

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           +        +  G    G+LG+ +   L A    I++E
Sbjct: 297 MHPAVVMVTITAGASLAGILGMLLAVPLTAAAFGIFRE 334


>gi|186682624|ref|YP_001865820.1| hypothetical protein Npun_R2290 [Nostoc punctiforme PCC 73102]
 gi|186465076|gb|ACC80877.1| protein of unknown function UPF0118 [Nostoc punctiforme PCC 73102]
          Length = 383

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/339 (15%), Positives = 117/339 (34%), Gaps = 17/339 (5%)

Query: 13  RWMIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           +W+ +  I++SLY L   +     + +A+++  T   +   F  +      F  ++A   
Sbjct: 5   QWIGLIAIVLSLYILWQIREVLLLMFAAVVLATTLNRLAKRF-QRFGMKRGFAVLLAVAI 63

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
                +     +      + +EL  +V            WL  +            ++  
Sbjct: 64  FFAGIVGFFWLIVPPFAQQFQELTYQVPKGFGR---FNTWLDAL--RTHIPNELVPYIPD 118

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             SL   ++ F+     + +   +  F    L+  L I+ +++       D  +  +   
Sbjct: 119 INSLIQQAQPFV-----NRLLGNSFAFVSGSLEVVLKILLVLVLTGMMLADPLAYRKVFV 173

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L    +    + I       +     G  I     G++      + GV + +AL ++  
Sbjct: 174 RLFPSFYRRRVEGILNKCEVSLEGWITGAFIAICVVGVMSLVGLSILGVKAALALAILAG 233

Query: 250 IMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
              +IP  G  +S         +    + A  + +   I   +    + P ++   + L 
Sbjct: 234 FFNLIPNLGPTMSVIPAMAIAFLD-EPWKAIAVLILYFIIQQVESNFITPVVMAHQVSLL 292

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              T    +  V   G LGLF+  + + ++A IW + ++
Sbjct: 293 PAITLIAQLFFVTFFGFLGLFLA-LPLTVVAKIWLQEVL 330


>gi|196233557|ref|ZP_03132399.1| protein of unknown function UPF0118 [Chthoniobacter flavus
           Ellin428]
 gi|196222409|gb|EDY16937.1| protein of unknown function UPF0118 [Chthoniobacter flavus
           Ellin428]
          Length = 347

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 97/292 (33%), Gaps = 17/292 (5%)

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
           +     +  +   + ++  F+  L  L      +  +LV+ +    +      + ++ +P
Sbjct: 48  RWGWPRWAGIGVALLIVLAFVALLGLLIPGLAGQAGKLVAHLPDVQK------QVVTQLP 101

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
           G     E+  K L         +       G             + L+     + M++  
Sbjct: 102 GSGPLPEIANKLLQSASFSDPDAVIGKFVTGA-----------AVALEVVSQFLVMLVIA 150

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
            +   DG  I Q L +       + +++ S  + +V+    +G  I +   G        
Sbjct: 151 VYLLVDGSRIFQWLLAFLPRAQRSKFREASPKIAQVVSRFIVGQFICSTLAGTYAFVVLS 210

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
              VP+ + L ++ AI  ++P      F   ++ +    +   A  +         +   
Sbjct: 211 CLHVPNAILLALVAAIFDILPILGFFLFIIPAVGMAFTVSPVVAGAVAALYGAYHLMEAY 270

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            + P + G  +KL  L      + G    G +G      ++A   V+ K  +
Sbjct: 271 FIVPKVYGEQLKLSTLTVLLSCLAGWLLGGPVGAVAILPVVASYPVVEKIWL 322


>gi|169349890|ref|ZP_02866828.1| hypothetical protein CLOSPI_00629 [Clostridium spiroforme DSM 1552]
 gi|169293458|gb|EDS75591.1| hypothetical protein CLOSPI_00629 [Clostridium spiroforme DSM 1552]
          Length = 300

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 97/299 (32%), Gaps = 21/299 (7%)

Query: 65  IATVSVMCLFIVP-LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL- 122
           I+ + ++   I+P L+      +  +   +  ++               +       +L 
Sbjct: 2   ISLLGLIVSIIIPNLVESLISLVSNISSFLVNIIDNIDEIFKYLNIDFRMEDIGSIKDLI 61

Query: 123 ---WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              W +  SH  ++   S   +  N  +F+ +F + F                   +   
Sbjct: 62  NMPWQETFSHILNILTKSAGGIMANATNFLAKFGAIFSGFTFSL------------YLLG 109

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW----L 235
           D      QL  +   +F     KI           F       + E  +L   Y+    L
Sbjct: 110 DKEKFILQLRKIIGAIFGYQITKIIFNYGHRTNQIFSDFIGGQLTEACILWILYYTTMRL 169

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
            G P    +  I A+   +P   PI+   V  +L++  +   A    ++  I   I D  
Sbjct: 170 FGFPYPELIATIIALFCFVPFFGPIASMFVGAFLILSKDSLMAIWFIIYFQILSQIEDNF 229

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           + P +VG  + LP +     +       G+ G+ I     A +  + +  +    + ++
Sbjct: 230 IYPKVVGNSVGLPGIWVLLSIFAFGDLFGIFGMVIAVPSAACLYALIRGLVNKALKKRK 288


>gi|218235427|ref|YP_002366643.1| hypothetical protein BCB4264_A1926 [Bacillus cereus B4264]
 gi|218163384|gb|ACK63376.1| putative membrane protein [Bacillus cereus B4264]
          Length = 337

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 56/341 (16%), Positives = 122/341 (35%), Gaps = 25/341 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +G  R++++ I+ + LY LK     +L   I+ F           K + +   +    
Sbjct: 9   RSRGFQRFLVLIIVALVLYALKSMINLILITFILTFLMDRFQRFISRKLKVNRKIVIACL 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++      L        +++ +L+ +  L  Q+           P      +     
Sbjct: 69  YIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQN-----------PPDNEIVKYALST 117

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           ++  +  K + +      G+D I +  +  G + L   LS+I  +  L     +   I  
Sbjct: 118 INEMEVSKYIEQ------GVDVIYQSIANIGKVSLQILLSLILSLFFL----LEKERIIT 167

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 +     ++++I+    +  RS         +IA+   ++   A  + G P  + 
Sbjct: 168 FTSKFKDSKLKIFYEEIAYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLLV 227

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L V+  ++ +IP  G  IS   + I     G +     + ++  +   +    L P  + 
Sbjct: 228 LAVMIFLLGLIPVAGVIISLFPLCIIAYNVGGVMYVVYILVFITVIHALESYFLNPKFMS 287

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               LP   TF  L+     +G+ GL IG  +   +  +  
Sbjct: 288 AKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLD 328


>gi|168700128|ref|ZP_02732405.1| hypothetical protein GobsU_11410 [Gemmata obscuriglobus UQM 2246]
          Length = 606

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/340 (14%), Positives = 108/340 (31%), Gaps = 15/340 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +   ++   ++  L++ +  F PV  A+   F   P+ +    +        AVI TV +
Sbjct: 13  LAATVVGAALVAVLFWARSIFIPVTLAVFFAFVLSPVVNRLQRRGIGRP--AAVILTVGL 70

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           + L  + +  +    +  + E  ++   +  Q    V +W++   GG          +  
Sbjct: 71  LGLTGLGIGTVIAQQITRVAETSAEKRESIKQKLTSVKQWIAG--GGESQFGKLVDDVED 128

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIF---LDYCLSIIFMIIALFFFYRDGFSISQ 186
             +    +            P  A+++  +     +      F  I   F       +  
Sbjct: 129 VFASAKPASNSNAVVVEQASPSMAAQWSGMLSPAAEVLGQAAFTFILTVFMLLKREDLRN 188

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           ++  L          K      + I    L   ++    G ++  + +  GV   +  G 
Sbjct: 189 RMIRLLGAGKITTTTKAVDDASQRISKYLLSQLMVNTAFGAIITISLFALGVKYSILWGF 248

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIK-----GNIFNATCLFLWGAIELFIVDKTLRPFL 300
           I  +M  +P  G  +      ++ +       G       +         I +  + P L
Sbjct: 249 IATLMRYVPYIGTWVGLIPPLLFSVATAPEWGGGWGQPVAVLALFLGLEAICNNLVEPKL 308

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFI-GPVLMALIA 339
            G  + L  +             G +GL + GP+ + L+ 
Sbjct: 309 YGQSMGLSEVAQLVSAAFWAFMWGPIGLILSGPLTVCLLV 348


>gi|160935591|ref|ZP_02082966.1| hypothetical protein CLOBOL_00481 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441335|gb|EDP19045.1| hypothetical protein CLOBOL_00481 [Clostridium bolteae ATCC
           BAA-613]
          Length = 380

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/324 (15%), Positives = 104/324 (32%), Gaps = 14/324 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY--- 83
           L  FF P +   +I   + P+      + +      +++   + + L I  L  L     
Sbjct: 36  LLKFFMPFVIGWVIAMIANPLVRFLERRVKLVRRHSSIVIVAAALALVIGLLYLLVSRTF 95

Query: 84  ----YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
                 ++++  L + +       +     L D               +    +  + E 
Sbjct: 96  VLLRQFIIDLPGLYAGIEGDVARSMEQLEHLFDFMPDSIQQSWAQFGNNLGSYMGTVVEK 155

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
                        A           +  +  I++ +FF  D   I   + +        Y
Sbjct: 156 IASPT-----VEAAGTVAKSLPAMLVYTVVTILSAYFFIVDRDRILAAIKAHMPQWAGRY 210

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGA 258
              +   V  +I   F+    I     L+L   + + GV        + A +  +P  G 
Sbjct: 211 GLYLKGEVRHLIGGYFMAQFKIMAVVWLILTVGFIVLGVGYGPLWAFLIAFLDFLPVFGT 270

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
             +     +  L+ G    A  L L   +   +  + ++P LVG  + LP L T F L  
Sbjct: 271 GTALLPWGLIKLLGGEYAFAAGLLLIYVLTQ-VTRQIVQPKLVGDSMGLPPLLTLFLLYL 329

Query: 319 GVRTMGLLGLFIGPVLMALIAVIW 342
           G +  G+ G+ +   +  L   ++
Sbjct: 330 GFKADGIAGMILAVPIGLLFVNLY 353


>gi|307824016|ref|ZP_07654243.1| protein of unknown function UPF0118 [Methylobacter tundripaludum
           SV96]
 gi|307734800|gb|EFO05650.1| protein of unknown function UPF0118 [Methylobacter tundripaludum
           SV96]
          Length = 366

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/356 (12%), Positives = 107/356 (30%), Gaps = 13/356 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +  + NPQ +   +I+    V +Y L     PV  ++++ +    + S   S        
Sbjct: 18  KRFLPNPQAVALAIILIASFVLIYSLSDLLMPVFVSIVLAYLLEGLVSKAES-MNMHRLP 76

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +     M      L +L      +  ELV ++             L ++   + +  
Sbjct: 77  AVYLVFSVFMACLGFLLFYLIPMVSQQAVELVQQIPEILNRAQTGILRLPEMYPKLVSES 136

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              + +   Q   +             +   ++   +  +   + +  + + +FFF +D 
Sbjct: 137 KIQQIMFAVQRELLTY--------GQNVLSLSAASVVGLVSVMIYLFLVPMMVFFFLKDK 188

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +                 ++   V   I +   G          V    Y   G+   
Sbjct: 189 QMLIAWFLQFMPR-DRNLTVRVWEEVDTQIGNYVRGKFGEVFILWAVSYVTYATMGLNYA 247

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCL--FLWGAIELFIVDKTLRP 298
           + L V+  +  +IP  GA +    V      +  +     +   +  +I   +    L P
Sbjct: 248 MLLAVLMGLQVIIPYVGATLVTFPVLGVAYFQWGLGGDEFMYVVIAYSIIQALDGVVLVP 307

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            L    + L  +     ++      G  G+F+   L  ++  +          + +
Sbjct: 308 VLFSEAVNLHAVAIIVAILLFGGLWGFWGVFLAIPLATVVKAVLTAWPRIGDNSLD 363


>gi|238922675|ref|YP_002936188.1| hypothetical protein EUBREC_0250 [Eubacterium rectale ATCC 33656]
 gi|238874347|gb|ACR74054.1| protein of unknown function UPF0118 [Eubacterium rectale ATCC
           33656]
          Length = 388

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/339 (13%), Positives = 107/339 (31%), Gaps = 17/339 (5%)

Query: 31  FAPVLSALIIGFTSWPI---YSS---------FISKKEES---STFLAVIATVSVMCLFI 75
             P++  +++ +   P+   Y              K  +         +I+   ++ + +
Sbjct: 52  LMPIIMGIVLAYLINPMVEFYDRKLSNSLGKAIEKKCGKRPSMRGLSILISLAIIIAIIV 111

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V ++ +    +  +   VS +    Q  +     L+       A E+ T+  ++  S   
Sbjct: 112 VLIMMVVPQLVSNITNAVSLLPDQIQDLVKKITELAK--NNDRAKEIITELYNNGISYFT 169

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                     + F+           ++  ++ I  I  L           + + +     
Sbjct: 170 EWVKDNMLGQVTFVINGIMGIFGTAVNCLVAFIVAIYVLLSKDTFKRQTKKLVSAFLPER 229

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                  I +   K+      G  I ++  G +      +  +P    + VI  +  +IP
Sbjct: 230 HIQVLSSILKESDKIFGGFISGKIIDSLIIGAICFVCCLILRMPYVALISVIVGVTNVIP 289

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P      S  L++  +        L+  I   +    + P ++G    L      F 
Sbjct: 290 FFGPYIGAIPSTILIMLDSPSKGVIFLLFIIILQQVDGNIIGPKILGESTGLSPFWVVFA 349

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           +  G    G++GLFIG     ++  + K  +      KE
Sbjct: 350 IFLGNGLFGVMGLFIGVPTWGVVYYLIKRYVNYRVRKKE 388


>gi|229020662|ref|ZP_04177393.1| hypothetical protein bcere0030_51380 [Bacillus cereus AH1273]
 gi|229026874|ref|ZP_04183199.1| hypothetical protein bcere0029_51400 [Bacillus cereus AH1272]
 gi|228734426|gb|EEL85095.1| hypothetical protein bcere0029_51400 [Bacillus cereus AH1272]
 gi|228740635|gb|EEL90902.1| hypothetical protein bcere0030_51380 [Bacillus cereus AH1273]
          Length = 347

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 98/284 (34%), Gaps = 8/284 (2%)

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           ++    Y ML     ++         I + + +      +              ++  + 
Sbjct: 66  IIIALLYVMLVAGIAITLFKYLPVLTIQISQLIYQFNVFLRNPPDSELIKYAVNAVNHME 125

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            +     G+D + +  +  G   L   LS+I  +    FF  +   I        E    
Sbjct: 126 LSKYVGQGVDILYKSITNVGKFGLQVLLSVILSL----FFLLEKARIVAFTSKFKESRLA 181

Query: 198 AYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            ++ +I     K  RS         +IAI   ++   A W+ G P  + L ++  ++ +I
Sbjct: 182 IFYNEIEYFGKKFARSFGKVIEAQFLIAIVNCVLSVIALWILGFPQLLGLALMIFLLGLI 241

Query: 255 PG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P  G  IS   + +     G I     + +   +   +    L P  +     LP   TF
Sbjct: 242 PVAGVIISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTF 301

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
             L+     +G+ GL IG  +   +  +   +   ++++ EK  
Sbjct: 302 MILIFSEHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKDVEKNK 345


>gi|149190262|ref|ZP_01868536.1| permease PerM [Vibrio shilonii AK1]
 gi|148835869|gb|EDL52832.1| permease PerM [Vibrio shilonii AK1]
          Length = 356

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/340 (14%), Positives = 114/340 (33%), Gaps = 14/340 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P  +   +I+    +++YF     AP+L A+++ +   WP+    +       T   V 
Sbjct: 15  DPDAVSLVVILLFGFITIYFFGNLIAPLLVAIVLAYLLEWPVSK--LCALGVPRTLSVVA 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + L ++ +  L      ++  L++ +         + ++++ IP           
Sbjct: 73  VILLFISLMLLAIFGLVPTIWNQVGNLLNDIPNMYNG---MQQFVATIPERYPDLAEIHL 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +   ++K       +      +    S          + +I + + +FF  +D   + 
Sbjct: 130 VETIMGNVKDKVLVLGENVVKGSLASLVS-----LAALAVYLILVPLLVFFLLKDKEEMV 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                +          K+   + + I +   G  +  +  G V    + +  +   V L 
Sbjct: 185 SMASGVLPR-NRRLANKVWIEMNQQISNYIRGKVLEILIVGTVSYVTFAILDLRYSVLLA 243

Query: 246 VITAIMAMIP-GGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V+     +IP  GA      V+ + L   G       L +   I   +    L P L   
Sbjct: 244 VLVGFSVLIPYIGAAAVTVPVAMVGLFQWGLAPQFYWLLVAYGIIQALDGNVLVPVLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            + L  +     ++      G  G+F    L  L+  +W 
Sbjct: 304 AVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWN 343


>gi|83748965|ref|ZP_00945974.1| Hypothetical Protein RRSL_01236 [Ralstonia solanacearum UW551]
 gi|207721704|ref|YP_002252143.1| permease transmembrane transport protein [Ralstonia solanacearum
           MolK2]
 gi|207744194|ref|YP_002260586.1| permease transmembrane transport protein [Ralstonia solanacearum
           IPO1609]
 gi|83724388|gb|EAP71557.1| Hypothetical Protein RRSL_01236 [Ralstonia solanacearum UW551]
 gi|206586866|emb|CAQ17451.1| permease transmembrane transport protein [Ralstonia solanacearum
           MolK2]
 gi|206595599|emb|CAQ62526.1| permease transmembrane transport protein [Ralstonia solanacearum
           IPO1609]
          Length = 356

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 56/346 (16%), Positives = 121/346 (34%), Gaps = 14/346 (4%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T    + +    +  I L  L  L     P + A I+ +   P        +        
Sbjct: 7   TQDTKRTLAWIAVAVIFLALLKLLAPTLTPFVFAFILSYILHPGVEWLQRHRVPR----- 61

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
               V  + L ++ L  L    ML +  ++ + + A +  +P      +       +E+ 
Sbjct: 62  ----VLGVFLMVLLLAVLAVALMLLILAVLQREIPAIREQLPGMLSKLNAAVTPRLAEMG 117

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRD 180
                    L+ L    L ++  D +    +     G   +     +  + I +F+   D
Sbjct: 118 VHVRFDFPGLRKLLTEQLASSPEDVMSTALNYLRVSGSAAVQLLGIVFLVPIVMFYLLMD 177

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              + ++L+ +    +    ++++     ++     G  I+ +   +   S   LAG   
Sbjct: 178 WNMLMRRLEGVVPRRWIGKTRELAAETDGLLSQYLRGQIIVMLVLAVYYSSGLALAGFDV 237

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + +G+ T +   IP         ++I   LL  GN++    + +   I   +    L P
Sbjct: 238 ALPIGIFTGLAVFIPYIGFGIGLTLAILSALLQFGNLYGLLAVAVVYGIGQVLEGFYLTP 297

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            LVG  I L  L     L+   +  G  G+ +   + A++ V  ++
Sbjct: 298 RLVGERIGLHPLAVILALLAFGQLFGFFGILLALPISAVLLVGLRQ 343


>gi|258509137|ref|YP_003171888.1| permease [Lactobacillus rhamnosus GG]
 gi|258540340|ref|YP_003174839.1| permease [Lactobacillus rhamnosus Lc 705]
 gi|257149064|emb|CAR88037.1| Permease [Lactobacillus rhamnosus GG]
 gi|257152016|emb|CAR90988.1| Permease [Lactobacillus rhamnosus Lc 705]
 gi|259650424|dbj|BAI42586.1| putative transporter protein [Lactobacillus rhamnosus GG]
          Length = 358

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 60/344 (17%), Positives = 123/344 (35%), Gaps = 23/344 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E  +N   + R +++F + + L+F +   + +L   I  F    +  +            
Sbjct: 5   EKFINNVPVRRTVVLFSVFLVLWFARSIMSDILLTFIFAFLVSRLVHAVQRHVHVRP--- 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                V V+ ++I+ +L L Y  +  +  ++ + +        V  + +           
Sbjct: 62  ----FVIVVPVYILVILGLIYAAVHYVPAIIHQTITLFNS---VQDFYNSDAFANNQVMQ 114

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           W    +   +L    +T     G+  +  +A   G + L   LS I      FFF  +  
Sbjct: 115 WVLQSTKSLNLTEQLKT-----GLSTVLEYAGNIGAMGLTLVLSFILS----FFFTIELD 165

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVP 239
           S+        +  F  Y+K +     K I +          IA+   ++         +P
Sbjct: 166 SLPAFGQLFLDSPFGWYFKDLRYFALKFINTFGVVMEAQIFIAVVNTVITTITLLFMKMP 225

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           +  +L ++  ++++IP  GA IS   ++I     G   +   + +  A    +    L P
Sbjct: 226 NIPSLAIMVFLLSLIPVAGAIISLIPLTIIGYTVGGWQDVITILIMIAAIHVLEAYVLNP 285

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
             +    +LP   TF  L+   R  G  GL +G  +      + 
Sbjct: 286 KFMSSRTQLPVFFTFVVLLVAERLFGTWGLIVGIPIFTFFLDVL 329


>gi|283795713|ref|ZP_06344866.1| membrane protein [Clostridium sp. M62/1]
 gi|291077393|gb|EFE14757.1| membrane protein [Clostridium sp. M62/1]
          Length = 398

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/350 (13%), Positives = 118/350 (33%), Gaps = 23/350 (6%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSF-----------ISKKEESSTFLAVIATVSVMCLFI 75
           L+G  AP++   I+ +   P+Y+             +  ++ +      + T + + +  
Sbjct: 43  LRGIAAPIIYGSILAYLLAPVYNRVTGAGLRVLSGRLKSRKHAEVIARAVGTAASLAVIF 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELW------TKHLS 128
           V +  L    + ++ + +     A    +  +  W+  +       E        T    
Sbjct: 103 VVIAGLLQLIIPQVVDSIMGFQAAFPTYLQNLYSWIQKLLADNSEIEQIVIGNIQTAVSL 162

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               L+     F     ++F+   +S    +  ++  + +  +I + +       +  Q 
Sbjct: 163 FDGWLEQAFTRFDMNRLVEFLTGVSSSL-FLLFNFVKNWLIGLIVMVYMLNIKDRLITQA 221

Query: 189 DSLGEHLFPAYWKK----ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             +                 R+V ++     +G  + ++  G++      +   P  + +
Sbjct: 222 KKIVYGCLSIRLANHVISEMRLVHRMFGGFIIGKILDSLIIGILCFIGTSILHTPYALLV 281

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            VI  +  +IP   P      S  L++  +      L LW  I   I    + P ++G  
Sbjct: 282 SVIVGVTNVIPFFGPFIGAIPSGILVLLVSPVQCAVLLLWILILQQIDGNIIGPKILGNS 341

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             L      F ++      G +G+ I     A+I  + K+++      K+
Sbjct: 342 TGLASFWVLFSILIFGGLFGFVGMIIAVPGFAVIYDLVKKAVNYSLRRKQ 391


>gi|324014572|gb|EGB83791.1| hypothetical protein HMPREF9533_01419 [Escherichia coli MS 60-1]
          Length = 376

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 113/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +       +A   V
Sbjct: 41  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITIV 95

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E +S +   N+                       + +   
Sbjct: 96  VVVMLIALTALVGVLAASFNEFISMLPRFNKELT--------------RKLFKLQEMLPF 141

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++  
Sbjct: 142 LNLHMSPERILQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMR- 200

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+   
Sbjct: 201 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGIIVWLGLELMGVQFALMWAVLAFF 259

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA IS     I +L+   I+    +     +   ++   L P ++G  + +  
Sbjct: 260 LNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGMST 319

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 320 MVVFLSLLIWGWLLGPVGMLL 340


>gi|227496553|ref|ZP_03926833.1| membrane protein [Actinomyces urogenitalis DSM 15434]
 gi|226833968|gb|EEH66351.1| membrane protein [Actinomyces urogenitalis DSM 15434]
          Length = 394

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/341 (15%), Positives = 124/341 (36%), Gaps = 25/341 (7%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           ++ I    +YFL+    P   AL +  T  P+ +            ++ +A + ++  F+
Sbjct: 25  LLVIGGAGVYFLQDLLGPAFFALTLVITVRPLVAWASRHHVPRP--VSAVAAIVIVYTFV 82

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + L       + ++ E +       +                 A  L TK      +L  
Sbjct: 83  LALFAALGVAVAQLVETLPGYSSKFEA------------IWEDAEGLLTKLGVDQSTLFD 130

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              + + T+    +   A         +   ++ M + + F   D   I  + ++L    
Sbjct: 131 QVSSMIDTS---RVVSLAQGLLGQLTSFGSLLMIMALTIVFLMFDMSRIEVRAEALLR-- 185

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                        + +RS +L  T+  +   ++   A  + GVP  V  GV++ I   IP
Sbjct: 186 LKPEISTALADFARSVRSYWLVSTVFGLIVAVLDVIALGVLGVPMAVTWGVLSFITNYIP 245

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G  +     ++  L+    + A  + +   +  F++   ++P   G  + L    TF 
Sbjct: 246 NIGFFVGLIPPALLALVDSGPWTALWVIVAYVVLNFVIQTLIQPKFTGDAVGLNTTTTFL 305

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            L+   + +G LG      ++A+   ++ ++++   + + +
Sbjct: 306 SLMFWSQVIGALG-----TILAVPLTLFVKAMLIDSDPRAR 341


>gi|229190050|ref|ZP_04317057.1| UPF0118 membrane protein [Bacillus cereus ATCC 10876]
 gi|228593439|gb|EEK51251.1| UPF0118 membrane protein [Bacillus cereus ATCC 10876]
          Length = 337

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 56/341 (16%), Positives = 122/341 (35%), Gaps = 25/341 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +G  R++++ I+ + LY LK     +L   I+ F           K + +   +    
Sbjct: 9   RSRGFQRFLVLIIVALVLYALKSMINLILITFILTFLMDRFQRFISRKLKVNRKIVIACL 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++      L        +++ +L+ +  L  Q+           P      +     
Sbjct: 69  YIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQN-----------PPDNEIVKYALST 117

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           ++  +  K + +      G+D I +  +  G + L   LS+I  +  L     +   I  
Sbjct: 118 INGMEVSKYIEQ------GVDVIYQSIANIGKVSLQILLSLILSLFFL----LEKERIIT 167

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 +     ++++I+    +  RS         +IA+   ++   A  + G P  + 
Sbjct: 168 FTSKFKDSKLKIFYEEIAYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLLV 227

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L V+  ++ +IP  G  IS   + I     G +     + ++  +   +    L P  + 
Sbjct: 228 LAVMIFLLGLIPVAGVIISLFPLCIIAYNVGGVMYVVYILVFITVIHALESYFLNPKFMS 287

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               LP   TF  L+     +G+ GL IG  +   +  +  
Sbjct: 288 AKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLD 328


>gi|219850625|ref|YP_002465058.1| hypothetical protein Cagg_3786 [Chloroflexus aggregans DSM 9485]
 gi|219544884|gb|ACL26622.1| protein of unknown function UPF0118 [Chloroflexus aggregans DSM
           9485]
          Length = 386

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/356 (14%), Positives = 127/356 (35%), Gaps = 17/356 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I   +++ +I+V L+ +     P + A+I  +   P+      +   S           +
Sbjct: 17  ITSAIVVGLIIVFLHEITHILPPFIGAIITAYLFNPLIGWLHRRTGISRAIW-------I 69

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + L++V    L+         +V +          + R L+       +  L    +S  
Sbjct: 70  VILYVVAGSVLYSLFTALWPRIVQQSRDLAASAPMIIRELTIWFEQNESIVLGDMVISLA 129

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                +    L ++   ++     +     L+  + ++  +I  F+       + +   +
Sbjct: 130 PLEAQVIG--LISDVAGWLSGNVPKIVFSALESVIYLLVYLIITFYLLLQAPQLKEWARN 187

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L    +      +   + +V  +   G  I+ +   ++L     +  VP  + + + + +
Sbjct: 188 LIPSPYRREIAHLGYQIDRVFNAYIRGQLILIVIMSVLLYIPLSILQVPYALVIAIASGV 247

Query: 251 MAMIPGGAPISFTAVSIYLLIKG--------NIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           + ++P   P S   +++ + +          N+     L +   +   I D  + P ++G
Sbjct: 248 LEILPIIGPWSAAGIAMTVALFQPVTPFGLSNVSLVILLGVIYFVLRQIEDHFIIPNVMG 307

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             ++L      F ++ G    G  GLFI   + A+I +I       + +  E  +S
Sbjct: 308 PLVRLHPGVVIFAILAGGALAGAFGLFISIPIAAVIRIILSYLYRKLTDQPEPPAS 363


>gi|309812879|ref|ZP_07706611.1| putative membrane protein [Dermacoccus sp. Ellin185]
 gi|308433157|gb|EFP57057.1| putative membrane protein [Dermacoccus sp. Ellin185]
          Length = 456

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/312 (16%), Positives = 99/312 (31%), Gaps = 23/312 (7%)

Query: 40  IGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA 99
           +     P  S F             +  + + C  +          + E++ L+S     
Sbjct: 63  LAAAIEPAVSRFAMHMP--RALATGLVVLLLACAVVGFFAAFGGLLVDEVQALISAAPGL 120

Query: 100 NQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI 159
               +    W++             K  +     K+LS   L  + +       +   + 
Sbjct: 121 VTDCV---DWVNR------------KFDTDYDINKLLSSVNLTPDNVANYGSQLAGGVLG 165

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
            +   +S  F +  L FF     +   +L +    LFP   +++   V +V  +   G  
Sbjct: 166 LVTSVVSTAFNLFVLIFFTCYISAGLPRLRTWVAGLFPPRQQRVVLTVWEVFVAKVGGYV 225

Query: 220 IIAIGEGLVLGSA----YWLAGVPSHVALGVITAIMA-MIP-GGAPISFTAVSIYLLIKG 273
                   +  +       L G+P  +ALG+ T I+A  +P  G  IS     +      
Sbjct: 226 AARFILATISATIHCTFMMLIGMPYWLALGLWTGIIAQFVPNIGTYISIVLPVLVGATSD 285

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
              N   + ++  +   I + T+ P +    + +    +F   + G    GL G  +G  
Sbjct: 286 KPINGLFVLIFAIVYQQIENVTIEPNISARAVDVHPAVSFASALAGANMFGLAGGLLGVP 345

Query: 334 LMALIAVIWKES 345
             A    I    
Sbjct: 346 AAATAMAILDLY 357


>gi|300764159|ref|ZP_07074154.1| hypothetical protein LMHG_10132 [Listeria monocytogenes FSL N1-017]
 gi|300515149|gb|EFK42201.1| hypothetical protein LMHG_10132 [Listeria monocytogenes FSL N1-017]
          Length = 348

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 54/345 (15%), Positives = 114/345 (33%), Gaps = 25/345 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  ++ + LY L+     +L   I  F    + +  + +       +
Sbjct: 5   EKLKENDTARRVLVFVLLGIVLYLLRSMIDLILLTFIFAFLVTRLENVILKRVHVPRKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V     V ++      + ++ +LV  +V    +  P    +     G      
Sbjct: 65  VIVLYSLVAVFLYVAIVHFLPILINQISQLVDSLVKLYNN--PSDNTIVKWIVGFLKESN 122

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             K+L                 G+DFI    S  G + L + L++I  +    FF  +  
Sbjct: 123 IQKYLQ---------------AGVDFIIASLSGIGSVGLSFFLALILSL----FFSLEKE 163

Query: 183 SISQQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            ++              +K+     +              +IA+    +   A +L   P
Sbjct: 164 RVTSFTGQFMTSKVGFIFKEAAFFGKKFVSTFGVVLEAQLMIALVNTFITTIALYLMDFP 223

Query: 240 SHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             ++L ++  ++ +IP    I     + +     G   +   + +   I   I    L P
Sbjct: 224 QLLSLSIMVFVLGLIPVAGVIISCIPLVLIAYSVGGFQDVVYILITVVIVHAIETYILNP 283

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L+     LP   TF  L+      G+ GL +G  +   +  I +
Sbjct: 284 KLMSSKTNLPVFYTFIILIFSETFFGVWGLIVGIPVFVFLLDILE 328


>gi|291545214|emb|CBL18323.1| Predicted permease [Ruminococcus sp. 18P13]
          Length = 450

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/341 (15%), Positives = 117/341 (34%), Gaps = 36/341 (10%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGF-------------FAPVLSALIIGFTSW--------- 45
           P+G+  ++++   ++  + L  F              APV + L+  +            
Sbjct: 21  PRGLAAFLVLACAIIFYFLLLNFDKVQSFFEDVFRAIAPVFTGLLFAYLLNPAVVMLEKH 80

Query: 46  ---PIYSSFISKKEESST---FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV-VL 98
              P+   F +  +   T       +  ++V+CL ++  + +       +  +  ++   
Sbjct: 81  LAKPLNRRFKNSSKGKKTARIISTFVTVIAVVCLIVLLFVLVVPEVAGSITAIAGELPND 140

Query: 99  ANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGM 158
             +    V + + +         L + +L+ P  L+  + + +  N   ++   AS   M
Sbjct: 141 LGEFTDTVNQKVQNNSRLSALYSLVSNYLAEP--LENWANSGILNNASVWVGYLASGI-M 197

Query: 159 IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF-PAYWKKISRIVPKVIR---ST 214
              +   ++   +I  F+         +Q   +   L  P     I   +    R   S 
Sbjct: 198 GAFNLVYNLCVGLIICFYLLIGKERFMRQGGKILYVLLKPNRADWILHRLNGANRTFSSA 257

Query: 215 FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGN 274
            LG  + +I  G++      +   P    + VI  +  +IP   P      S  L++  +
Sbjct: 258 ILGKILDSIIIGMLCFIGVVILRTPYPALIAVIVGVTNVIPFFGPFIGAIPSTLLVLMHD 317

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              A    ++  +        L P +VGG I LP   + F 
Sbjct: 318 PVKALYFVIFIVVLQQFDCNILDPKIVGGSIGLPAFWSLFA 358


>gi|256845707|ref|ZP_05551165.1| permease [Fusobacterium sp. 3_1_36A2]
 gi|294785046|ref|ZP_06750334.1| permease [Fusobacterium sp. 3_1_27]
 gi|256719266|gb|EEU32821.1| permease [Fusobacterium sp. 3_1_36A2]
 gi|294486760|gb|EFG34122.1| permease [Fusobacterium sp. 3_1_27]
          Length = 362

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/327 (13%), Positives = 119/327 (36%), Gaps = 8/327 (2%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           K +F  ++ ++ I     PI      K + +      ++   V+ +F +  L +    + 
Sbjct: 37  KDYFMTIIMSIFIAILLEPIVKYLKKKSKINDILAISLSIAFVVLIFTILSLIVIPEIIS 96

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            +K L +     ++    +     ++   +    ++T ++    S          TN   
Sbjct: 97  SLKVLNNIYPYISEKATTMG---KNLVDYLAEKNIYTVNMDEVNSYFTNFIANNVTNIRK 153

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP----AYWKKI 203
            +           + +  ++    +  F    D   +++ L+++   +F      Y    
Sbjct: 154 IVSALFGSLVDWTIGFT-NLFLAFVLAFLILLDKKHLTKTLENIIIIIFGVKNTPYIMNK 212

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
            ++  ++  +   G  I++   GL +     + G P      V+  +  MIP    I   
Sbjct: 213 LKLSKEIFLNYVSGKLIVSAIVGLCVYIVLLVTGTPYAALSAVLLGVGNMIPYVGSIIGG 272

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
            ++ +L++         L +   I   +    + P ++G  + L        ++      
Sbjct: 273 IIAFFLILLVAPIKTIVLLIAITISQLVDGFIVGPKIIGNKVGLNTFWVMVSMIIFGNLF 332

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIK 350
           G++G+F+G  ++++I + + + + A +
Sbjct: 333 GIVGMFLGTPILSIIKLFYVDLLKAKQ 359


>gi|220906874|ref|YP_002482185.1| hypothetical protein Cyan7425_1453 [Cyanothece sp. PCC 7425]
 gi|219863485|gb|ACL43824.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7425]
          Length = 384

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/353 (15%), Positives = 126/353 (35%), Gaps = 33/353 (9%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES--STFLAV 64
               ++R++++F    ++  L  +F  +++   I      + +  +              
Sbjct: 15  QNSTLLRYLLLFGCGWAIVVLINYFYGMIALFTIAGIFAALLNYPVVWLSRYLPRGIAIA 74

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVL--ANQHGIPVPRWLSDIPGGMWASEL 122
           +     + LF+  +  +    + + + L++ +    A+Q+ +P    L+ +        L
Sbjct: 75  LTFTIAVLLFLGFVTLVGLEVLNQGQSLLANLKDTIADQNILPFQDLLNRLEINKLIGTL 134

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            T   S                                    +++IF  +   +   DG 
Sbjct: 135 QTGLAS------------------------GLDIVRNVFSSVMTVIFGAVICLYMLIDGE 170

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +   L  L      A   + ++I  +       G  ++ +         + + GV   +
Sbjct: 171 KLWLSLLQLLPT---ASRDRFAQIFQRSFLGFLRGQLLLMVFLFTTCLVVFTILGVKYAL 227

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L +I  ++  IPG GA +    V +         +A  + +   + + I D  LRP ++
Sbjct: 228 ILALILGLVDAIPGIGATLGVILVGLLAAASQGFDSAIQVVVGAIVMIQIQDNVLRPKVM 287

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G  ++L  +  F  L  G R  GLLG+F+   +  +I  IW +++   ++  E
Sbjct: 288 GNALELNPVMLFLSLFIGERIAGLLGIFLAVPIAGMI-AIWLQTLNQEQQELE 339


>gi|53728982|ref|ZP_00134350.2| COG0628: Predicted permease [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126208241|ref|YP_001053466.1| putative permease perM-like protein [Actinobacillus
           pleuropneumoniae L20]
 gi|303251430|ref|ZP_07337606.1| putative permease perM-like protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303252319|ref|ZP_07338485.1| putative permease perM-like protein [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307256787|ref|ZP_07538566.1| Permease PerM [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|307261245|ref|ZP_07542920.1| Permease PerM [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|126097033|gb|ABN73861.1| putative permease perM-like protein [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|302648778|gb|EFL78968.1| putative permease perM-like protein [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302649662|gb|EFL79842.1| putative permease perM-like protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306864835|gb|EFM96739.1| Permease PerM [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306868976|gb|EFN00778.1| Permease PerM [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
          Length = 353

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 59/354 (16%), Positives = 117/354 (33%), Gaps = 15/354 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           ++   +PQ +    I+ I    +YF      P+L A++  +   WPI       K     
Sbjct: 10  KQKFNDPQTVALLGILLIGFGIIYFFSDLIMPLLIAIVFAYLLEWPIKLLTQKLKFPR-- 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEM-KELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
              +++ + V+  FI    FLF   +  +  + V+ +         +  WL  +P     
Sbjct: 68  ---LLSLILVLGSFISLSTFLFVVMLPTLWNQAVTFIRDLPSMLNLLNAWLEALPEHYPE 124

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              +    S    LK     F ++     +    S  G+    + + ++      FF  +
Sbjct: 125 LIDYAMLDSLMNMLKEKILGFGESLLALSVNSIISLVGLGIYAFLVPLMV-----FFLLK 179

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D     +                +   + + I +   G  +  +  G+V  +      + 
Sbjct: 180 DKPLFVRGFIKFLPK-NRRLAANVWFEMQQQIANYIRGKVLEILIVGIVTYAILLFFDLR 238

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLR 297
             + L V   +  +IP  GA +    V++  L   G   +   L L   I   +    + 
Sbjct: 239 YPLLLSVAVGLSVLIPYIGAVLVTIPVALVALFQFGLSTDFYYLLLAFVISQLLDGNLVV 298

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           PFL    + L  L     ++      G  G+F    L  L+  +        +E
Sbjct: 299 PFLFSEAVNLHPLTIIVAVLIFGGLWGFWGVFFAIPLATLVKAVINALPSNEEE 352


>gi|116495596|ref|YP_807330.1| permease [Lactobacillus casei ATCC 334]
 gi|191639078|ref|YP_001988244.1| Predicted permease [Lactobacillus casei BL23]
 gi|239629996|ref|ZP_04673027.1| transport protein [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|301067135|ref|YP_003789158.1| putative permease [Lactobacillus casei str. Zhang]
 gi|116105746|gb|ABJ70888.1| Predicted permease [Lactobacillus casei ATCC 334]
 gi|190713380|emb|CAQ67386.1| Predicted permease [Lactobacillus casei BL23]
 gi|239527608|gb|EEQ66609.1| transport protein [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|300439542|gb|ADK19308.1| Predicted permease [Lactobacillus casei str. Zhang]
 gi|327383142|gb|AEA54618.1| hypothetical protein LC2W_2287 [Lactobacillus casei LC2W]
          Length = 357

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 122/361 (33%), Gaps = 23/361 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E  +N   + R +++F + + L+F +   + +L   I  F    +  +            
Sbjct: 5   EKFINNLPVRRTVVLFSVFLLLWFARSIMSDILLTFIFAFLVSRLVHAVQRHVHIRP--- 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                     + +VP+  L   G++         ++    G+             + +  
Sbjct: 62  ---------FVIVVPVYILVILGLVYAAVHYVPAIIHQTIGLFNS-------VQNFYNSE 105

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
              +    Q +   +++   T  +        ++        L++    I  FFF  +  
Sbjct: 106 AFANNQVMQWVLQSTKSLNLTEQLKTGVTTVLQYAGNIGAMGLTLFVSFILSFFFTIELD 165

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVP 239
           S+        +  F  Y+K +     K I +          IA+   ++         +P
Sbjct: 166 SLPAFGQLFLDSPFGWYFKDLQYFAMKFINTFGVVMEAQIFIAVVNTVITTITLLFLKMP 225

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           +  +L ++  ++++IP  GA IS   ++I     G   +   + +  A    +    L P
Sbjct: 226 NTPSLAIMVFLLSLIPVAGAIISLIPLTIIGYTVGGWQDVLTILIMIAAIHVLEAYVLNP 285

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             +    +LP   TF  L+   R  G  GL +G  +      +     +A   +K+   +
Sbjct: 286 KFMSSRTQLPVFFTFVVLLVAERLFGTWGLIVGIPIFTFFLDVLGVKKIAGTAHKQSTYA 345

Query: 359 N 359
           +
Sbjct: 346 S 346


>gi|229494234|ref|ZP_04387997.1| integral membrane protein [Rhodococcus erythropolis SK121]
 gi|229318596|gb|EEN84454.1| integral membrane protein [Rhodococcus erythropolis SK121]
          Length = 392

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/336 (15%), Positives = 116/336 (34%), Gaps = 14/336 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + ++   +  L+    PV  AL+      PI           S    ++  ++ + L   
Sbjct: 33  LLVLGYVVLRLETVLIPVGLALLTSALLIPIVDRLQVWGVPRSA-AVIVVLLASIGLVAG 91

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            + F+    +  + +L  +   +      +  WL+  P      ++     S  +S++  
Sbjct: 92  IMTFVVEQFIDGLPQLTDQFTASVTQ---IQNWLTSGPLHFSEDQIRQAGDSVVKSVQSN 148

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            E+             A+  G IF    L+    +  L FF   G  I Q +  +     
Sbjct: 149 RESLTSGA-----LTTATVIGEIFTGALLT----LFTLIFFLYGGDQIWQFVTRIVPTDA 199

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
               +         +         +A  + + +G+   + GVP  + L  +  I A IP 
Sbjct: 200 RRRVRIAGSAGFGSLIGYVRATVAVAAADAIGIGAGLAILGVPLALPLASLVFIGAFIPI 259

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            GA ++     +  L+      A  +       + +    ++P L+G  ++L  L     
Sbjct: 260 VGAFLTGFLAVLVALVTKGFLTALIVLGIIIGVMQLEAHVMQPLLLGRAVRLHPLAVVLA 319

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           +  G+   G++G  +   ++A++    +  +    +
Sbjct: 320 ITTGIVLAGIVGGLLAVPIVAVLNTAIRSLLADDPD 355


>gi|327537952|gb|EGF24648.1| protein belonging to uncharacterized protein family UPF0118
           [Rhodopirellula baltica WH47]
          Length = 370

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 116/328 (35%), Gaps = 9/328 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            ++L +LY+ +    PV +A+++  T  PI      +    S   A+     ++    + 
Sbjct: 1   MLVLYALYYARSLVIPVATAIVLYLTLRPI-VRHAKRIGVPSPVGAIGIIAGILLTLGLG 59

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
              +       +      + +A Q    +   L D+       EL          +    
Sbjct: 60  TYLVLEPAKETIGAAPQHLAVAKQKLSFITDRLKDVDQAT--EELAETEDVAAGEVASEK 117

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              ++     +   ++   G   +   L+I   +  L+F    G  + + +     +   
Sbjct: 118 PVPVEIKQPTWTSGWSYLSGTGNVVSFLTICIAL--LYFLLATGDDLLRSVMRSLPNFSS 175

Query: 198 AYW-KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                ++   V + + S    ++ I  G G+ +    W+ G+PS +  GV+      IP 
Sbjct: 176 RRKLVEVIENVQEGLGSYLAQVSAINAGLGVCVAVVMWMLGMPSPIMWGVMAFAFNFIPI 235

Query: 257 GAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
              I  +     + LL     + A  + L       +  + + P ++G  + +  +  F 
Sbjct: 236 VGAIAGALIIFFVALLNFEPTYYAFVVTLAFMTLTSLEGQFITPAILGRSMSMSPVLVFL 295

Query: 315 GLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            +V      G++G+F+  P+L+A     
Sbjct: 296 SIVVWGWMWGIMGVFLSVPILIAARMAC 323


>gi|220913551|ref|YP_002488860.1| hypothetical protein Achl_2806 [Arthrobacter chlorophenolicus A6]
 gi|219860429|gb|ACL40771.1| protein of unknown function UPF0118 [Arthrobacter chlorophenolicus
           A6]
          Length = 387

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/306 (15%), Positives = 109/306 (35%), Gaps = 15/306 (4%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
            + ++  +     VIA VS++ +       +++    +  +LV +          +  +L
Sbjct: 86  VLKRRGINDALATVIAFVSLLVVLGGVFTVIYFSVRSQWDDLVQQASSG---LDQLQSFL 142

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
              P  +               +       +           A     +  ++    + +
Sbjct: 143 QSGPLQI-----------DEAQIDAARNAIVDFATSSQARSGAITGLSVVTEFLTGAVLL 191

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           ++ LFFF +DG  I   L S       +  +++     +V+     G  I+A+ + + +G
Sbjct: 192 VVILFFFLKDGERIWSFLISPFTGDRASRLRRVGTRSQEVLGGYVRGTAIVALVDTVGIG 251

Query: 231 SAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
           +A  +  VP  + L ++  I A IP  GA ++    ++  L+      A  +        
Sbjct: 252 AALLILQVPLALPLAMVVFIGAFIPIVGATMAGILAALVALVANGPVVALIVVAVVVAVN 311

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            +    L+P ++G  ++L  L     L  G    G++G  +   + A+   I K      
Sbjct: 312 QLEGNLLQPVVMGKSLQLHALVILLALTAGTLLAGIVGAVLAVPITAVAWAIIKVWTTED 371

Query: 350 KENKEK 355
            +   +
Sbjct: 372 PQGAGR 377


>gi|239907728|ref|YP_002954469.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
 gi|239797594|dbj|BAH76583.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
          Length = 428

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/331 (15%), Positives = 104/331 (31%), Gaps = 12/331 (3%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +L     +     F  LV L    G F  V +  I+ F          ++     +    
Sbjct: 67  LLRTNKTLAIWAAFFGLVWLTSYYGLFGLVFTTYILCFLFSGPIEQLAARTRWPRSLWTT 126

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
              +  + + +  +  +      E    + K+    +         + +   M A     
Sbjct: 127 AIYLIFLAVVLTIISSVVPKIGTESAAFLKKLPDTLETLRKHLDQWAWLAPDMAAPISKV 186

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           K     ++L  +    L    ++ + +  +      L    S + M+        D   +
Sbjct: 187 KDYLALEALVGVKAETLFALAVNSLNQVTTYVSTFLLGTLFSFLIML--------DFPKL 238

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPK---VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +  SL +      +   +R V +   V+   F    +IA    ++     +L G+   
Sbjct: 239 RAKTISLRDSRLRDIYDVTARSVVRFAIVVGMGFRAQMMIAGVNTVLTALGMYLLGIQPV 298

Query: 242 VALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
             L  +     +IP  G  IS   + +  +      +A    +   +   I    L P +
Sbjct: 299 GLLSTVVFFCGLIPVLGTFISSAPIVLVAVNTVGPSHALWAIVMIIVVHTIETYILNPRI 358

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
           V    K+  L T   L  G +  GL G+ +G
Sbjct: 359 VAAMFKISPLVTLIILYVGHKLFGLWGMVLG 389


>gi|327543545|gb|EGF29964.1| protein belonging to uncharacterized protein family UPF0118
           [Rhodopirellula baltica WH47]
          Length = 345

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 77/223 (34%), Gaps = 17/223 (7%)

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
             P  L   +   L+     F+    +           + I ++I +FF           
Sbjct: 113 QEPDELLANAAADLRDQLEAFLRNAVATLSSELFQLGSTSIVILIYVFFLLLG------- 165

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                 +L       ++  V + +RS     T+I++  G+V G A WL GVP  +  G++
Sbjct: 166 ------NLSGYGENTLAYQVDRQVRSYLFVKTMISLATGIVFGMALWLFGVPMALTFGLL 219

Query: 248 TAIMAMIPGGAPI---SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
             ++  IP   PI         I L   G++                    L P L+G  
Sbjct: 220 AFLLNYIPNIGPILASILPLPFILLHPDGSMLWMISAIAVTCSIQVASGNLLEPKLMGNS 279

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESI 346
             L  +     L+      G+ G+F+  P+  A+   + +  +
Sbjct: 280 ADLHPVVILLALMFWGTLWGITGMFLATPITAAIKIALDRMDV 322


>gi|261369000|ref|ZP_05981883.1| putative membrane protein [Subdoligranulum variabile DSM 15176]
 gi|282568868|gb|EFB74403.1| putative membrane protein [Subdoligranulum variabile DSM 15176]
          Length = 374

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 85/249 (34%), Gaps = 4/249 (1%)

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
            WL  +   M   E W + L+      +   T   T+G+  +   A           + +
Sbjct: 121 AWLDSLNIDMPQLESWLRSLNLNWPDLLQKATTYLTSGVSNVFSSAFGLLSSLGGIVMQV 180

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFP----AYWKKISRIVPKVIRSTFLGMTIIAI 223
           +  +I   +       + +Q  +L +   P         +           F+G    AI
Sbjct: 181 VIAVIFALYLLAGKERLGRQFHALADTYLPASVCDRLWYVLATAHDTFTKFFVGQFTEAI 240

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
             G++      L  +P    +G +    A++P         +  ++++  N   A    +
Sbjct: 241 IIGVLCTLGMLLFRLPYAPMIGTLVGATALLPVVGAYLGAGIGAFMILTVNPLQAIGFLV 300

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           + A+   +    + P +VG  I LP +     +  G    G+ G+ +   + A +  + +
Sbjct: 301 FIAVLQQLEGNLIYPRVVGTSIGLPGIWVLTAVTLGGGIGGIAGMLLAVPVTATVYRLIR 360

Query: 344 ESIMAIKEN 352
             +   ++ 
Sbjct: 361 ADVRHRRDQ 369


>gi|32473068|ref|NP_866062.1| hypothetical protein RB4377 [Rhodopirellula baltica SH 1]
 gi|32397747|emb|CAD73748.1| putative membrane protein [Rhodopirellula baltica SH 1]
          Length = 395

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 56/328 (17%), Positives = 120/328 (36%), Gaps = 10/328 (3%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           F+ L +LY  +  F P+L A    + +       + +    S   A    +++  +F   
Sbjct: 50  FLTLYALYIGRNLFMPILVAG-FAYLTLRPVVRAMGRIGIPSGVAATAIMLAIATVF--- 105

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
              + Y      ++++ +V  +         ++ D    +  +       +  +++    
Sbjct: 106 -GTIGYVLSGPAQDMLQQVPGSMPEVKEKLGFIFDHLETVNQATEDISDTADKENITSEE 164

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
           +  +            S       +    +      LFF    G S+   + S       
Sbjct: 165 KP-VPVEIKQPAWTTTSPLIAGTGNAVSFVSIAAALLFFLMAAGDSLIVSVVSSLPSFSS 223

Query: 198 AY-WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
              + ++   V   + S    +T I    G+ +G+A WL G+PS +  GV    +  IP 
Sbjct: 224 KRRFIEVLEGVQDALSSYLAWVTCINACLGVCIGTAMWLLGMPSPLLWGVAAMFLNFIPI 283

Query: 257 GAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
              +   A+  +  L+   +   A  +    A    +  + + P L+G  +KL     F 
Sbjct: 284 VGAMVGIAMVFFVALVSFEHASFAFVVAGTYATLTALEGQFITPTLLGKSMKLSSALVFI 343

Query: 315 GLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            +V      G+LG+F+  P+L+A++ V+
Sbjct: 344 SIVIWGWMWGMLGVFLAVPILIAVVMVM 371


>gi|160875889|ref|YP_001555205.1| hypothetical protein Sbal195_2778 [Shewanella baltica OS195]
 gi|160861411|gb|ABX49945.1| protein of unknown function UPF0118 [Shewanella baltica OS195]
 gi|315268080|gb|ADT94933.1| protein of unknown function UPF0118 [Shewanella baltica OS678]
          Length = 369

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 113/331 (34%), Gaps = 29/331 (8%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWP---IYSSFISKKEESSTFLAVIATVSVMC 72
            + IIL  +        P + +  +     P   + + F         +LAVI  +  + 
Sbjct: 19  FVVIILAGIKAASPIVVPFVLSSFLAVICNPAIGLMTKFRV-----PKWLAVILLMGFIV 73

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           L  + L  +    + E  + + +  +                        W  +  H  +
Sbjct: 74  LMGLWLASVVGSSVNEFSKQLPQYRVQLVEQFA-----------------WILNKLHSFN 116

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           ++I  +  L            +       +   ++  +I+ + F   +  S+ ++L  L 
Sbjct: 117 IQISKDQVLAYFDPGMALSMTTNMLSGVGNVMANLFLIILTIVFMLFEAQSLPKKL-HLA 175

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                   K+I R +  V +   +   ++++  G+++G    + GV   +   VI  +  
Sbjct: 176 LDDPDMRLKQIDRFLQSVNQYMVIKT-LVSLATGVIVGVGLTIIGVDYAMLWAVIAFLFN 234

Query: 253 MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            IP  G+ I+     +   I+     A    L       ++   + P  +G  + L  L 
Sbjct: 235 YIPNIGSIIAAIPAVLLAFIQLGPAAAGGTALLYVGANMVMGNMIEPKFMGRGLGLSTLV 294

Query: 312 TFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            F  L+     +G +G+ +  P+ M +   +
Sbjct: 295 VFLSLIFWGWLLGSVGMLLSVPLTMVVKIAL 325


>gi|261418426|ref|YP_003252108.1| hypothetical protein GYMC61_0960 [Geobacillus sp. Y412MC61]
 gi|319767614|ref|YP_004133115.1| hypothetical protein GYMC52_2592 [Geobacillus sp. Y412MC52]
 gi|261374883|gb|ACX77626.1| protein of unknown function UPF0118 [Geobacillus sp. Y412MC61]
 gi|317112480|gb|ADU94972.1| protein of unknown function UPF0118 [Geobacillus sp. Y412MC52]
          Length = 353

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 68/188 (36%)

Query: 158 MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG 217
             F+    +++ +   +F+  +D   + + +  +    +        + V + +     G
Sbjct: 159 KSFIGSAATLLIIPFIVFYMLKDIDVLKKAVWYMTPKRWRGPGMTFLKDVDESLGGYIRG 218

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFN 277
              +    GL      WLAG+   + LG +  +  +IP   P+     ++ L    ++  
Sbjct: 219 QLFVCAAIGLAAALGLWLAGMDYPLLLGFVIGVTNIIPYFGPLIGAVPAVILAATVSLKM 278

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
              + +      F+    L P +VG  + +  L     L  G    G+LGL +     A+
Sbjct: 279 VVIVLVIIFTLQFLEGNILSPLIVGKSVHMHPLVIMLALFAGGELAGVLGLILAVPTAAV 338

Query: 338 IAVIWKES 345
           + V     
Sbjct: 339 LKVAIAHW 346


>gi|148284186|ref|YP_001248276.1| putative permease protein [Orientia tsutsugamushi str. Boryong]
 gi|146739625|emb|CAM79414.1| putative permease protein [Orientia tsutsugamushi str. Boryong]
          Length = 348

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 60/336 (17%), Positives = 122/336 (36%), Gaps = 17/336 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +     I+ ++I  IIL   YFL     P L+A ++ +   PI      K + S   +  
Sbjct: 3   VKTNNYILYFIITAIILSLCYFLINIATPFLAAAVLAYILNPIVEILQIKLKLSRNLIVS 62

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKV---VLANQHGIPVPRWLSDIPGGMWASE 121
           I  V  + + IV  L L      +   LV+ +       Q  I     ++++        
Sbjct: 63  IVFVVFLTILIVAALLLMPIIYKQAALLVANIPAYRATIQSFIESNNSINNLDLNHNIKH 122

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           + T+ ++    +               I   A ++ +  +   ++  F  I LF+F RD 
Sbjct: 123 ILTEIINSWILIITH------------ILNHAWQYTITTIHSVVTAAFTGILLFYFLRDW 170

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I     S+      +Y  KI   +   + +   G     +   +    +  L  +   
Sbjct: 171 KLIINSCKSILPQQSLSYINKIVNSINTSLLAYAQGQLNTCLILSIFYSISLLLINLDFS 230

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIK--GNIFNATCLFLWGAIELFIVDKTLRPF 299
           + +G+ +  + +IP    I  T++++       G  F    + +   I   +    L P 
Sbjct: 231 LTIGLFSGTIIIIPLIGTIISTSIALITCFSQFGLSFKLLYVIMIYIISHILESHFLTPK 290

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
           L+G  + L  +  +F ++     +G  G+F+   L 
Sbjct: 291 LIGSKVGLHPIWIYFSVLTCSYYLGFTGIFLAIPLA 326


>gi|55821093|ref|YP_139535.1| hypothetical protein stu1068 [Streptococcus thermophilus LMG 18311]
 gi|55823019|ref|YP_141460.1| hypothetical protein str1068 [Streptococcus thermophilus CNRZ1066]
 gi|33313719|gb|AAQ04247.1|AF430847_14 EpsX [Streptococcus thermophilus]
 gi|22218127|gb|AAM94579.1| EpsX [Streptococcus thermophilus]
 gi|22316058|gb|AAL32508.1| CpsX [Streptococcus thermophilus]
 gi|55737078|gb|AAV60720.1| possibly involved in exopolysaccharide export [Streptococcus
           thermophilus LMG 18311]
 gi|55739004|gb|AAV62645.1| conserved hypothetical protein [Streptococcus thermophilus
           CNRZ1066]
          Length = 378

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 106/292 (36%), Gaps = 4/292 (1%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELW 123
           ++ +       +   ++ +  + ++ + ++ ++  ++  I  +  WL          +  
Sbjct: 79  VSLLLAFATIGLIFTWVVFTVLPDLIDSINTLISQDRSAINNLINWLLKNKSLQKIIQDL 138

Query: 124 TKHLSHPQSLKILSETFLKT--NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                  + +   S   L+   NG+       +      ++  +SI+F    L    + G
Sbjct: 139 GGVTQVRELINSYSAQLLQQIMNGLTNFLTSLTSLPSTLINLFISIVFSCYVLVGKEKLG 198

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +++ +D          +  +  I+     + F+  +I A   G +      +   P  
Sbjct: 199 SQVNRLVDVYLGRY-GKTFHYVVAILNNRFHNFFVYQSIEACILGTLCYIGMRIFNFPYA 257

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             + ++    AMIP         +   L++  ++  A     +  I        + P++V
Sbjct: 258 ATISILIGFSAMIPVLGAYIGVTIGTILIMTHSVTLALLFVAYVVILQQFEGNLIYPYVV 317

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           GG   LP +     +  G    G+LG+ +   + A +  I K++++  ++ K
Sbjct: 318 GGSTGLPVVWVILAITIGSALGGILGMLVSVPVAATLYQIVKDNVVTREKAK 369


>gi|326801119|ref|YP_004318938.1| hypothetical protein Sph21_3732 [Sphingobacterium sp. 21]
 gi|326551883|gb|ADZ80268.1| protein of unknown function UPF0118 [Sphingobacterium sp. 21]
          Length = 351

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/340 (14%), Positives = 111/340 (32%), Gaps = 24/340 (7%)

Query: 16  IMFIILVSLYFLKGFFAPVLS---ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           I+ ++++ ++ LK  F  +L      ++      + +    K + S  +  +      + 
Sbjct: 27  IISLLVIVIFILKAAFNVLLMVFAGSLMAIYFHGLANLLERKIKLSHGWCLLTGIFITLA 86

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           L  V   FL     +++ E+   +          P  L D+   +  S++  K L     
Sbjct: 87  LVGVLFWFLGAKISMQVGEMTQDI----------PEILRDVRERLGRSDIGRKLL----- 131

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                  +L     + + +               +  ++    FF  +     + +  L 
Sbjct: 132 ------FYLSDGNGEKMMKSFQDVFRTSFGVVGDMYIILFIGIFFTVNPKLYREGIIKLI 185

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                   + + R +   ++    GM I       +      L GVP  +AL  +   + 
Sbjct: 186 PPGNKKQARDVIRRLDFTLKGWLKGMLIAMFFIASLSFIGLSLIGVPMGLALAFLAGFLN 245

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
            IP   P+     ++ +    +   A  + L   +   I    + P +    IK+P    
Sbjct: 246 FIPNFGPLIAMIPAVLIGFTVSANTALLIALLYVVIQAIESNVVTPMIQNVMIKIPPALI 305

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
               V      G LG+ +   L+ +I V+  E  +  +  
Sbjct: 306 IISQVLFGTLTGGLGIILATPLLVVIIVLVDELYVKKQRP 345


>gi|304411929|ref|ZP_07393540.1| protein of unknown function UPF0118 [Shewanella baltica OS183]
 gi|307303303|ref|ZP_07583058.1| protein of unknown function UPF0118 [Shewanella baltica BA175]
 gi|304349789|gb|EFM14196.1| protein of unknown function UPF0118 [Shewanella baltica OS183]
 gi|306913663|gb|EFN44085.1| protein of unknown function UPF0118 [Shewanella baltica BA175]
          Length = 369

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 113/331 (34%), Gaps = 29/331 (8%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWP---IYSSFISKKEESSTFLAVIATVSVMC 72
            + IIL  +        P + +  +     P   + + F         +LAVI  +  + 
Sbjct: 19  FVVIILAGIKAASPIVVPFVLSSFLAVICNPAIGLMTKFRV-----PKWLAVILLMGFIV 73

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           L  + L  +    + E  + + +  +                        W  +  H  +
Sbjct: 74  LMGLWLASVVGSSVNEFSKQLPQYRVQLVEQFA-----------------WILNKLHSFN 116

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           ++I  +  L            +       +   ++  +I+ + F   +  S+ ++L  L 
Sbjct: 117 IQISKDQVLAYFDPGMALSMTTNMLSGVGNVMANLFLIILTIVFMLFEAQSLPKKL-HLA 175

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                   K+I R +  V +   +   ++++  G+++G    + GV   +   VI  +  
Sbjct: 176 LDDPDMRLKQIDRFLQSVNQYMVIKT-LVSLATGIIVGVGLTIIGVDYAMLWAVIAFLFN 234

Query: 253 MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            IP  G+ I+     +   I+     A    L       ++   + P  +G  + L  L 
Sbjct: 235 YIPNIGSIIAAIPAVLLAFIQLGPAAAGGTALLYVGANMVMGNMIEPKFMGRGLGLSTLV 294

Query: 312 TFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            F  L+     +G +G+ +  P+ M +   +
Sbjct: 295 VFLSLIFWGWLLGSVGMLLSVPLTMVVKIAL 325


>gi|326800764|ref|YP_004318583.1| hypothetical protein Sph21_3375 [Sphingobacterium sp. 21]
 gi|326551528|gb|ADZ79913.1| protein of unknown function UPF0118 [Sphingobacterium sp. 21]
          Length = 372

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/287 (15%), Positives = 108/287 (37%), Gaps = 14/287 (4%)

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
            +  +++++++++ L       L         +  +      +    +  W+SD      
Sbjct: 61  RSVSSLLSSIALVILIGAVFTLLGTQLSSLANDWPAFKQQLLKSAADLQFWISD------ 114

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                T H+++   +  +++   K+          S+  M      L ++F  +  FF  
Sbjct: 115 -----TFHVNNKAQIDYINQAASKSLSTG--TTLLSKTLMSLSSLFLLLLFSFLYTFFIL 167

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                I + L +  +        +I   +  +I+   +G+ +  +   ++   A++  GV
Sbjct: 168 FHRRLIVRFLVNSFKENHSPVVYEIVYQIQYIIKRYVVGLFLQMLIVTILACLAFYFIGV 227

Query: 239 PSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
                LG+IT I  +IP  G   +     +         N   + +   +   +    + 
Sbjct: 228 KYSFLLGLITGIFNIIPYVGIFTALVITVLITFATSTATNVLFVVIALVVIHAVDGNYIM 287

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           P +VG  +++  L    GLV G    G+ G+F+   ++A++ V++  
Sbjct: 288 PKIVGSKVQINTLIALIGLVLGEMLWGITGMFLSIPIIAIMKVVFDR 334


>gi|323359451|ref|YP_004225847.1| permease [Microbacterium testaceum StLB037]
 gi|323275822|dbj|BAJ75967.1| predicted permease [Microbacterium testaceum StLB037]
          Length = 396

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/305 (18%), Positives = 113/305 (37%), Gaps = 17/305 (5%)

Query: 14  WMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +I   + V ++    LK    P+L A++I    WP +S     +     +LA++ TV  
Sbjct: 44  LVIAAALGVVIWVVIQLKLLVIPLLVAILITALVWPAFSFLQRHRW--PKWLAIVVTVLG 101

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
               I  L++L  + +   +E  S             ++L D P  + A ++        
Sbjct: 102 TIAVISGLVWLAVWQI--SREFASVQERTVLAVEQFRQYLIDGPLHLSAQQIDDGLTQAG 159

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
             L+  +E          +   A   G         ++  +  L     DG  I +    
Sbjct: 160 AFLQQQAE---------LLWTGALAIGTTLGHVGTGVLLTLFILLCLLADGGGIWRWTTR 210

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L   +         R   + ++S      ++A  + + +G   +L GVP  + +GV+  +
Sbjct: 211 LFPRVARPAVDGAGRAGWRTVKSYARTQLLVATIDAIGIGLGAFLLGVPLSIPIGVLVFL 270

Query: 251 MAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            A IP    ++  A+++++ L+      A  + +       +    L+P L+G  +K+  
Sbjct: 271 GAFIPFVGAVATGALAVFIALVYNGPLIALFMLIVVLGVQQVESHILQPILMGSAVKVHP 330

Query: 310 LPTFF 314
           L    
Sbjct: 331 LAVVL 335


>gi|269118828|ref|YP_003307005.1| sporulation integral membrane protein YtvI [Sebaldella termitidis
           ATCC 33386]
 gi|268612706|gb|ACZ07074.1| sporulation integral membrane protein YtvI [Sebaldella termitidis
           ATCC 33386]
          Length = 383

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/341 (14%), Positives = 120/341 (35%), Gaps = 8/341 (2%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           R +++F+++   + +  F +P + A++       I     SK +        IA + V  
Sbjct: 18  RILLVFLLIFIAFKIAVFLSPFVLAVLFSMIVTKIAKFLNSKVKLPKKISTAIALMIVFA 77

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVL-ANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
             +  +  +    +LE+  L   +   A +  + +  +++ +  G    +   + + +  
Sbjct: 78  TVVGLISLIVTKLILEIYSLSFNISTYAQEIRLWIDNFMNFMNRGTIILDRIPEQILNQL 137

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              +     + T+ I  I      F     +  +     +IA  F   D  +I   ++  
Sbjct: 138 KGSVSDIISMATSKISVILNNILSFITSLPNVVIYFFVTVIATVFMSLDKQNIILFVEKQ 197

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA-----YWLAGVPSHVALGV 246
               +      +   +  V+        ++       L        +    V   +   +
Sbjct: 198 LPASWLNKIYTLKNDLLSVVGGYLKAQAMLITICFFELLIGLNLFHFMGLNVQYPLTFAI 257

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           I   +  +P  GA        +  LI  +   A  L +   I +  V + L P L    I
Sbjct: 258 IICAIDALPILGAGAFMIPWIVVSLIVKDFKMAVALLILYVI-VTAVRQLLEPKLYSQNI 316

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            +  L T   +  G++  G +G+ +GP ++ ++  ++ E +
Sbjct: 317 GVHPLITLLSMYTGLKLAGFIGIIMGPAVVIILKNVFHEEL 357


>gi|226360347|ref|YP_002778125.1| hypothetical protein ROP_09330 [Rhodococcus opacus B4]
 gi|226238832|dbj|BAH49180.1| hypothetical membrane protein [Rhodococcus opacus B4]
          Length = 389

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/323 (12%), Positives = 105/323 (32%), Gaps = 15/323 (4%)

Query: 37  ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV 96
           A +   T  P+      +          +  +++    I  L                  
Sbjct: 60  AWLFSITIEPVVDWLERR-GLRRGLATGLVLLALFVFAIGFLALFGTLL----------A 108

Query: 97  VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
               Q    +P  LS +    W++ ++    +  + L  L+   ++     F P      
Sbjct: 109 QQLAQLLKALPGALSSV--TDWSNRVFDTDFATGEDLIHLTPETVRDLAERFTPGVLGVL 166

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
               L     ++ +++ +F+    G ++ + + S            +  I  +      +
Sbjct: 167 -SSLLGVVFQMLTLLLFVFYMSAQGPALRRTISSWFPARQQRVISVVWEISVEKAGGYVV 225

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNI 275
              I+A    +  G    + GVP  + L + T I++  +P        A+   +      
Sbjct: 226 SRLILAAISSVATGVFLVVIGVPYWLPLALWTGIVSQFVPTLGTYLAIALPAIIAAASQP 285

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
            +   + ++G +   I +  L P +    + +     F  ++ G    G +G  +   ++
Sbjct: 286 MDGVWVIVFGTVYQQIENYVLHPRITSATVSIHPAVAFGSVIVGASLFGPVGALVSVPVV 345

Query: 336 ALIAVIWKESIMAIKENKEKISS 358
           A+I  + +      +   ++ ++
Sbjct: 346 AVIEALVETYGRRYELVADQPAT 368


>gi|326941042|gb|AEA16938.1| hypothetical protein CT43_CH3271 [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 220

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 76/199 (38%)

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           T  +  +    + F     +  L+ + +   LF+  +DG  +                 +
Sbjct: 10  TKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQRQPAAMR 69

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           I   +   I S   G  I+++  G++L   Y + G+   V L ++  I+ ++P   PI  
Sbjct: 70  ILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVPYVGPIIA 129

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ +    +      + +   +      K + P ++G  + +  +   F ++     
Sbjct: 130 ITPALIIAFIDSPGMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFIILTAGNL 189

Query: 323 MGLLGLFIGPVLMALIAVI 341
            G++G+ +     A++ V+
Sbjct: 190 FGIMGIILAIPGYAILKVL 208


>gi|291526970|emb|CBK92556.1| Predicted permease [Eubacterium rectale M104/1]
          Length = 388

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/339 (13%), Positives = 107/339 (31%), Gaps = 17/339 (5%)

Query: 31  FAPVLSALIIGFTSWPI---YSS---------FISKKEES---STFLAVIATVSVMCLFI 75
             P++  +++ +   P+   Y              K  +         +I+   ++ + +
Sbjct: 52  LMPIIMGIVLAYLINPMVEFYDRKLSNSLGKAIEKKCGKRPSMRGVSILISLAIIIAIIV 111

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V ++ +    +  +   VS +    Q  +     L+       A E+ T+  ++  S   
Sbjct: 112 VLIMMVVPQLVSNITNAVSLLPDQIQDLVKKITELAK--NNDRAKEIITELYNNGISYFT 169

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                     + F+           ++  ++ I  I  L           + + +     
Sbjct: 170 EWVKDNMLGQVTFVINGIMGIFGTAVNCLVAFIVAIYVLLSKDTFKRQTKKLVSAFLPER 229

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                  I +   K+      G  I ++  G +      +  +P    + VI  +  +IP
Sbjct: 230 HIQVLSSILKESDKIFGGFISGKIIDSLIIGAICFVCCLILRMPYVALISVIVGVTNVIP 289

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P      S  L++  +        L+  I   +    + P ++G    L      F 
Sbjct: 290 FFGPYIGAIPSTILIMLDSPSKGVIFLLFIIILQQVDGNIIGPKILGESTGLSPFWVVFA 349

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           +  G    G++GLFIG     ++  + K  +      KE
Sbjct: 350 IFLGNGLFGVVGLFIGVPTWGVVYYLIKRYVNYRVRKKE 388


>gi|291526473|emb|CBK92060.1| Predicted permease [Eubacterium rectale DSM 17629]
          Length = 388

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/339 (13%), Positives = 107/339 (31%), Gaps = 17/339 (5%)

Query: 31  FAPVLSALIIGFTSWPI---YSS---------FISKKEES---STFLAVIATVSVMCLFI 75
             P++  +++ +   P+   Y              K  +         +I+   ++ + +
Sbjct: 52  LMPIIMGIVLAYLINPMVEFYDRKLSNSLGKAIEKKCGKRPSMRGLSILISLAIIIAIIV 111

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V ++ +    +  +   VS +    Q  +     L+       A E+ T+  ++  S   
Sbjct: 112 VLIMMVVPQLVSNITNAVSLLPDQIQDLVKKITELAK--NNDRAKEIITELYNNGISYFT 169

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                     + F+           ++  ++ I  I  L           + + +     
Sbjct: 170 EWVKDNMLGQVTFVINGIMGIFGTAVNCLVAFIVAIYVLLSKDTFKRQTKKLVSAFLPER 229

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                  I +   K+      G  I ++  G +      +  +P    + VI  +  +IP
Sbjct: 230 HIQVLSSILKESDKIFGGFISGKIIDSLIIGAICFVCCLILRMPYVALISVIVGVTNVIP 289

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P      S  L++  +        L+  I   +    + P ++G    L      F 
Sbjct: 290 FFGPYIGAIPSTILIMLDSPSKGVIFLLFIIILQQVDGNIIGPKILGESTGLSPFWVVFA 349

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           +  G    G++GLFIG     ++  + K  +      KE
Sbjct: 350 IFLGNGLFGVVGLFIGVPTWGVVYYLIKRYVNYRVRKKE 388


>gi|300898822|ref|ZP_07117127.1| conserved hypothetical protein [Escherichia coli MS 198-1]
 gi|300357548|gb|EFJ73418.1| conserved hypothetical protein [Escherichia coli MS 198-1]
          Length = 376

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/321 (13%), Positives = 114/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +       +A   V
Sbjct: 41  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITIV 95

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E +S +   N+                       + +   
Sbjct: 96  VVVMLIALTALVGVLAASFNEFISMLPKFNKELT--------------RKLFKLQEMLPF 141

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++  
Sbjct: 142 LNLHMSPERMLQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMR- 200

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+  +
Sbjct: 201 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGVIVWLGLALMGVQFALMWAVLAFL 259

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA IS     I +L+   ++    +     +   ++   L P ++G  + +  
Sbjct: 260 LNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMST 319

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 320 MVVFLSLLIWGWLLGPVGMLL 340


>gi|170761594|ref|YP_001788976.1| sporulation integral membrane protein YtvI [Clostridium botulinum
           A3 str. Loch Maree]
 gi|169408583|gb|ACA56994.1| sporulation integral membrane protein YtvI [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 351

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/333 (13%), Positives = 114/333 (34%), Gaps = 26/333 (7%)

Query: 15  MIMFIILVSLYFL-----KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           +I+F I+ ++ FL       +  P + A +         +  I K +  ++  + I T+ 
Sbjct: 11  LILFFIIYTISFLIFFKTLPYTLPFVLAFLFALVLKKPANYLIKKLKIKNSLASFIVTLI 70

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              + I  L +     + E+ +                          +   ++  +L+ 
Sbjct: 71  FFSIIITLLFWGINLLVNEVIDFGRNAQAYLYSHEGE--------ISNYVDNIYRYYLNL 122

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY----------CLSIIFMIIALFFFYR 179
           P S+    E  +  +            G I   +           + I+F +++ +FF +
Sbjct: 123 PPSIIDSIEKTIGNSFSKISNIIVFITGKIVSSFIGLLTSVPYILMLILFTLLSTYFFTK 182

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D    + +L  +  +   + +  I     +++    L    +           +++  + 
Sbjct: 183 DITKHNNKLSKIIFNEHSSKFSHIYLESKRMLNGYILSYLTLIGITFFETLIIFFIFNIK 242

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
             +   +  AI   +P  G    +  ++ IY+L+  N      L +     +  + + L 
Sbjct: 243 YSIMFSITAAIADFLPILGIGTIYVPLALIYILVYKNYVVGIGLLI-SYAAVSTIRQILE 301

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           P L+   + L  +     +  G++  G+ G+F 
Sbjct: 302 PKLLSSSLGLHPISILAAIFIGLKANGISGMFF 334


>gi|307247744|ref|ZP_07529782.1| Permease PerM [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|307252335|ref|ZP_07534232.1| Permease PerM [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306855774|gb|EFM87939.1| Permease PerM [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|306860257|gb|EFM92273.1| Permease PerM [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
          Length = 350

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 59/354 (16%), Positives = 117/354 (33%), Gaps = 15/354 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           ++   +PQ +    I+ I    +YF      P+L A++  +   WPI       K     
Sbjct: 7   KQKFNDPQTVALLGILLIGFGIIYFFSDLIMPLLIAIVFAYLLEWPIKLLTQKLKFPR-- 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEM-KELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
              +++ + V+  FI    FLF   +  +  + V+ +         +  WL  +P     
Sbjct: 65  ---LLSLILVLGSFISLSTFLFVVMLPTLWNQAVTFIRDLPSMLNLLNAWLEALPEHYPE 121

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              +    S    LK     F ++     +    S  G+    + + ++      FF  +
Sbjct: 122 LIDYAMLDSLMNMLKEKILGFGESLLALSVNSIISLVGLGIYAFLVPLMV-----FFLLK 176

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D     +                +   + + I +   G  +  +  G+V  +      + 
Sbjct: 177 DKPLFVRGFIKFLPK-NRRLAANVWFEMQQQIANYIRGKVLEILIVGIVTYAILLFFDLR 235

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLR 297
             + L V   +  +IP  GA +    V++  L   G   +   L L   I   +    + 
Sbjct: 236 YPLLLSVAVGLSVLIPYIGAVLVTIPVALVALFQFGLSTDFYYLLLAFVISQLLDGNLVV 295

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           PFL    + L  L     ++      G  G+F    L  L+  +        +E
Sbjct: 296 PFLFSEAVNLHPLTIIVAVLIFGGLWGFWGVFFAIPLATLVKAVINALPSNEEE 349


>gi|300822720|ref|ZP_07102857.1| conserved hypothetical protein [Escherichia coli MS 119-7]
 gi|331679542|ref|ZP_08380212.1| putative membrane protein [Escherichia coli H591]
 gi|300524720|gb|EFK45789.1| conserved hypothetical protein [Escherichia coli MS 119-7]
 gi|331072714|gb|EGI44039.1| putative membrane protein [Escherichia coli H591]
          Length = 376

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 115/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +       +A   V
Sbjct: 41  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVKRP-----VAITIV 95

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E +S +   N+               +       + +   
Sbjct: 96  VVVMLITLTALVGVLAASFNEFISMLPKFNKE--------------LTRKLFKLQEMLPF 141

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++  
Sbjct: 142 LNLHMSPERMLQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKM-R 200

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+  +
Sbjct: 201 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGVIVWLGLELMGVQFALMWAVLAFL 259

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA IS     I +L+   I+    +     +   ++   L P ++G  + +  
Sbjct: 260 LNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGMST 319

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 320 MVVFLSLLIWGWLLGPVGMLL 340


>gi|56421092|ref|YP_148410.1| hypothetical protein GK2557 [Geobacillus kaustophilus HTA426]
 gi|56380934|dbj|BAD76842.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 353

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 68/188 (36%)

Query: 158 MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG 217
             F+    +++ +   +F+  +D   + + +  +    +        + V + +     G
Sbjct: 159 KSFIGSAATLLIIPFIVFYMLKDIDVLKKAIWYMTPKRWRGPGMTFLKDVDESLGGYIRG 218

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFN 277
              +    GL      WLAG+   + LG +  +  +IP   P+     ++ L    ++  
Sbjct: 219 QLFVCAAIGLAAALGLWLAGMDYPLLLGFVIGVTYIIPYFGPLIGAVPAVILAATVSLKM 278

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
              + +      F+    L P +VG  + +  L     L  G    G+LGL +     A+
Sbjct: 279 VVIVLVIIFTLQFLEGNILSPLIVGKSVHMHPLVIMLALFAGGELAGVLGLILAVPTAAV 338

Query: 338 IAVIWKES 345
           + V     
Sbjct: 339 LKVAIAHW 346


>gi|146292797|ref|YP_001183221.1| hypothetical protein Sputcn32_1697 [Shewanella putrefaciens CN-32]
 gi|145564487|gb|ABP75422.1| protein of unknown function UPF0118 [Shewanella putrefaciens CN-32]
 gi|319426101|gb|ADV54175.1| protein of unknown function UPF0118 [Shewanella putrefaciens 200]
          Length = 360

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 79/233 (33%), Gaps = 3/233 (1%)

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               +    +  L T  +  I +    +    L   +  I + + +FFF +D   + +  
Sbjct: 129 QLNVMVAELKKMLDTQHVLDIAKQIIGYSASLLVLMVYAILVPLLVFFFLKDKDQLIRGS 188

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                       +++   + + I +   G  I  +  G+     +   G+     LGV+T
Sbjct: 189 KRFFP-ANRQLARQVWFEMNQQIFNYIRGKVIEIVIVGVASYIFFAFMGLRYSALLGVLT 247

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIK 306
            +  +IP  GA +    +++    +    +     + G   +  +D   L P L    + 
Sbjct: 248 GLSVLIPYVGATLVTLPITLVAFFQWGFTSEFGYLMLGYGIIQALDGNLLVPILFSDAVD 307

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           L  +     ++      G+ G+F    L +L+  +         +      SN
Sbjct: 308 LHPVIIIAAVLVFGGLWGVWGVFFAIPLASLVKAVINAWPKTEIQEPVPAPSN 360


>gi|188589827|ref|YP_001920518.1| permease [Clostridium botulinum E3 str. Alaska E43]
 gi|188500108|gb|ACD53244.1| permease [Clostridium botulinum E3 str. Alaska E43]
          Length = 343

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/307 (14%), Positives = 112/307 (36%), Gaps = 13/307 (4%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
            I+ +   PI   F SK +      +V+  + ++ LFI  +  +    + E+   +  + 
Sbjct: 44  FILAYIIAPIRDLFQSKFKIKKKVASVLIILIILGLFISCITLVIPELVKEISN-IGVIF 102

Query: 98  LANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFG 157
               + +        +        ++ + +     L +     L  N +           
Sbjct: 103 DNIANFLEDMYIKFRVDSFPILKSIYNELMEKGNILFLNLSKSLFNNIV----------- 151

Query: 158 MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG 217
            + ++  +S   + + +++F  DG  I  +L  +         KKI   + KV+     G
Sbjct: 152 -LIVENIVSCAVIPVVVYYFLCDGDKIYNKLLFILPTEKREVTKKILNDIDKVLGRYITG 210

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFN 277
              ++I  G +      +  V   + + ++ AI+ +IP   PI     ++ + +  +   
Sbjct: 211 QVFLSIIIGFLTFILLIIFKVKFPIWISILNAILNIIPYFGPIFGGVPAVLVALLDSPIK 270

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           A  + +   I   I    L P +      +  +     L+ G +  G +G+ +   +  +
Sbjct: 271 ALWVTIGVFIIQQIEGNILSPKITADSTDMHPVMIIILLLIGDKFGGFIGMLLAVPVGVI 330

Query: 338 IAVIWKE 344
           I V++ +
Sbjct: 331 IKVLYDD 337


>gi|153001218|ref|YP_001366899.1| hypothetical protein Shew185_2702 [Shewanella baltica OS185]
 gi|151365836|gb|ABS08836.1| protein of unknown function UPF0118 [Shewanella baltica OS185]
          Length = 369

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 113/331 (34%), Gaps = 29/331 (8%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWP---IYSSFISKKEESSTFLAVIATVSVMC 72
            + IIL  +        P + +  +     P   + + F         +LAVI  +  + 
Sbjct: 19  FVVIILAGIKAASPIVVPFVLSSFLAVICNPAIGLMTKFRV-----PKWLAVILLMGFIV 73

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           L  + L  +    + E  + + +  +                        W  +  H  +
Sbjct: 74  LMGLWLASVVGSSVNEFSKQLPQYRVQLVEQFA-----------------WILNKLHSFN 116

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           ++I  +  L            +       +   ++  +I+ + F   +  S+ ++L  L 
Sbjct: 117 IQISKDQVLAYFDPGMALSMTTNMLSGVGNVMANLFLIILTIVFMLFEAQSLPKKL-HLA 175

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                   K+I R +  V +   +   ++++  G+++G    + GV   +   VI  +  
Sbjct: 176 LDDPDMRLKQIDRFLQSVNQYMVIKT-LVSLATGVIVGVGLTIIGVDYAMLWAVIAFLFN 234

Query: 253 MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            IP  G+ I+     +   I+     A    L       ++   + P  +G  + L  L 
Sbjct: 235 YIPNIGSIIAAIPAVLLAFIQLGPAAAGGTALLYVGANMVMGNMIEPRFMGRGLGLSTLV 294

Query: 312 TFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            F  L+     +G +G+ +  P+ M +   +
Sbjct: 295 VFLSLIFWGWLLGSVGMLLSVPLTMVVKIAL 325


>gi|72162564|ref|YP_290221.1| hypothetical protein Tfu_2165 [Thermobifida fusca YX]
 gi|71916296|gb|AAZ56198.1| conserved hypothetical protein [Thermobifida fusca YX]
          Length = 414

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/286 (11%), Positives = 88/286 (30%), Gaps = 13/286 (4%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           P  +     +            ++     ++ L  L    + ++   VS +    +    
Sbjct: 74  PAVNWLHRHRWPR-GLATGAVMLAAAGTLVLFLTVLGSMLVGQVVAFVSDLPRMTRS--- 129

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           +  W++      ++       L+    L     + L  N +          G   L    
Sbjct: 130 LLAWVNATFHTDFSPTTLLSELTSVSGLVEEYASQLAGNVVG--------AGSTVLALLF 181

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
             + + +  F+   DG    + + S+          +   I  +          ++A+  
Sbjct: 182 DGLTIALFTFYLCADGPRFRRTICSVLPPRTQREVLRAWEIAIEKTGGYIYSRALLALIC 241

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLW 284
            +       L  +P   AL +   +++  IP        A+ + + +    + A  + ++
Sbjct: 242 TVAHYILLALLDIPFAFALALWMGVLSQFIPTVGTYIGGALPVLVALLDGFWPALWVLVF 301

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             +     +  L+P +    + +     F  ++ GV  +G  G  +
Sbjct: 302 VTVYQQFENYLLQPRITAKTLDMHPAVAFGSVLAGVAILGAPGALL 347


>gi|268316275|ref|YP_003289994.1| hypothetical protein Rmar_0708 [Rhodothermus marinus DSM 4252]
 gi|262333809|gb|ACY47606.1| protein of unknown function UPF0118 [Rhodothermus marinus DSM 4252]
          Length = 429

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 115/328 (35%), Gaps = 13/328 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P + A ++ + S P+      +        A+  TV V+      LL L    + ++ 
Sbjct: 94  LIPFVVAYLLAYLSNPLVDLLERRLHVPRWVSALTVTVLVVGALAAILLLLIPTIVGQLV 153

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELW----TKHLSHPQSLKILSETFLKTNGI 146
           EL+ +++        + RWL + P      E+        +    +        L  +  
Sbjct: 154 ELIRQML---NSVGELRRWLYENPLLDRLEEVLPIDRQALIQQFTTFLQQQLNALTQSLP 210

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
           D +   A   G   L     +  + + +F+  +D   +   L  L               
Sbjct: 211 DALATVAQSIGS-LLGALTVLAILPMLIFYTLKDYPKLRDALIGLFPKHNGRR--DYLMY 267

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAV 265
              V+ +   G  +I++     +  A  +  VP  + +G++  ++ +IP  GA ++    
Sbjct: 268 AGTVVGNYLRGQLLISLIAAFNVSVALLIFDVPFGLLIGLLAGLLNLIPNLGAVLTNIIA 327

Query: 266 SIYLLIKGN--IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
            +  L+ G+  + +A  +      +  +    L P ++   + L  +     L      +
Sbjct: 328 LLIALLFGDPPLLDAVIVTGVLLGQGLLEASVLSPHILSHQVGLHPVLILLSLFVFGYFL 387

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKE 351
           G  GL I     A++   ++    A ++
Sbjct: 388 GAFGLLIAVPTTAILVGFYQSYREAREK 415


>gi|188589789|ref|YP_001921436.1| hypothetical protein CLH_2055 [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188500070|gb|ACD53206.1| putative membrane protein [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 396

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/333 (15%), Positives = 118/333 (35%), Gaps = 19/333 (5%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEES-----------STFLAVIATVSVMCLFIVPLL 79
             P+L A++I +  +PI  S  +  + +                + + ++++ + +  L 
Sbjct: 51  IKPLLIAILITYILFPITKSIENFLKNNKLYKIKNKGTCRALSIIFSYLAIIGIILGLLC 110

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVP-RWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            +++    ++ + +S   +       +     S     +  S+L    L   +   +   
Sbjct: 111 GIYFMIGGQLSKNISISNIVEYISTYLNTHSFSSSSISLALSKLNLPFLDAMEDHIVEVV 170

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF-- 196
            F++    + I R AS F +       +    +I   +  +D        + L   +F  
Sbjct: 171 NFIQNYITNNIGRMAS-FAVSIGSGLATFFIALIISIYLLKDHEYFINLWNKLYYLIFRN 229

Query: 197 ---PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                    +   + +V      G  + A   G++   A  + G+     +G+I  +  +
Sbjct: 230 SKVGKKINYVFSTIHEVFGRFIRGQLLEAFFVGVLSAIALSIVGIDYAFVIGIIVGLSNL 289

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIKLPFLPT 312
           IP   PI  T ++  + +           +   I +  +D   L P +VG  + L  + T
Sbjct: 290 IPYVGPIVGTILAAIMGLLSGTPIKIVYAIIAMIIVQQIDNNLLAPKIVGNSVGLHAVFT 349

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
              ++ G    GL G+ +   L A   V++   
Sbjct: 350 MLAILIGGNIGGLFGMLLAVPLAASFKVLFNNW 382


>gi|315654678|ref|ZP_07907584.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
 gi|315491142|gb|EFU80761.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
          Length = 469

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 60/331 (18%), Positives = 111/331 (33%), Gaps = 27/331 (8%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I+  L  + G F P   A  +     P     I  +       A++  V +  +  V L
Sbjct: 63  LIIFLLSLIAGVFMPTFLAFSLALAVRPASEWLIRHRWP-VGLAALVNIVLLFAILFVML 121

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
             +       + EL              PR+      G     L+   ++        + 
Sbjct: 122 GLIAIAITAMVTEL--------------PRY------GAKFQALYEHAINQLDRRGFDTS 161

Query: 139 TFL---KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
             L   K   I+ I  + S F         ++ F+I+   F   D   + ++   L  + 
Sbjct: 162 AVLDSWKNVDINRIFSYLSGFANQISGAGTTLFFIIMVAIFVVGDTVVVRRRAAELASYA 221

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
               +    R     +R+ FL  T+      LV     +  GVP+    G++  +   IP
Sbjct: 222 PG--FAIALRNFSLRVRTYFLMTTVFGAVVALVDVGILYAFGVPTPWTWGILAFVANYIP 279

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G  +S     +  L    ++ A  +F+   +   +    L+P + G  + L    +F 
Sbjct: 280 AVGFILSMIPPILLALALDGVWPAVGVFIGYMVASLLFLNILQPRIAGNAVGLNATVSFL 339

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L+     MG LG  +   L      I+ +S
Sbjct: 340 SLMVWSTVMGPLGAILAVPLTLFFKAIFVDS 370


>gi|251778739|ref|ZP_04821659.1| putative membrane protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243083054|gb|EES48944.1| putative membrane protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 396

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/333 (15%), Positives = 118/333 (35%), Gaps = 19/333 (5%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEES-----------STFLAVIATVSVMCLFIVPLL 79
             P+L A++I +  +PI  S  +  + +                + + ++++ + +  L 
Sbjct: 51  IKPLLIAILITYILFPITKSIENFLKNNKLYKIKNKGTCRALSIIFSYLAIIGIILGLLC 110

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVP-RWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            +++    ++ + +S   +       +     S     +  S+L    L   +   +   
Sbjct: 111 GIYFMIGGQLSKNISISNIVEYISTYLNTHSFSSSSISLALSKLNLPFLDAMEDHIVEVV 170

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF-- 196
            F++    + I R AS F +       +    +I   +  +D        + L   +F  
Sbjct: 171 NFIQNYITNNIGRMAS-FAVSIGSGLATFFIALIISIYLLKDHEYFINLWNKLYYLIFRN 229

Query: 197 ---PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                    +   + +V      G  + A   G++   A  + G+     +G+I  +  +
Sbjct: 230 SKVGKKINYVFSTIHEVFGRFIRGQLLEAFFVGVLSAIALSIVGIDYAFVIGIIVGLSNL 289

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIKLPFLPT 312
           IP   PI  T ++  + +           +   I +  +D   L P +VG  + L  + T
Sbjct: 290 IPYVGPIVGTILAAIMGLLSGTPIKIVYAIIAMIIVQQIDNNLLAPKIVGNSVGLHAVFT 349

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
              ++ G    GL G+ +   L A   V++   
Sbjct: 350 MLAILIGGNIGGLFGMLLAVPLAASFKVLFNNW 382


>gi|209524021|ref|ZP_03272573.1| protein of unknown function UPF0118 [Arthrospira maxima CS-328]
 gi|209495693|gb|EDZ95996.1| protein of unknown function UPF0118 [Arthrospira maxima CS-328]
          Length = 382

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/330 (15%), Positives = 119/330 (36%), Gaps = 17/330 (5%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
              ++ ++++  +  P+ +   S K        ++  ++++       L +    + ++ 
Sbjct: 40  IILIMISVVLAASIIPLVNWAQSLKIPR-WLAVIVVYLTLIGGITGLGLIIGPSVVDQIN 98

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPG---GMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            LV ++ +  +  + +   ++   G         L         +++   +  L++ G  
Sbjct: 99  LLVRQLPIFAERSLDLISNIASSLGEDIPDLIDRLVDTQSLTNWTIRSSQQLILRSYG-- 156

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
                        +    S+I  +    +   D  ++ +    L  + +       ++ V
Sbjct: 157 --------ITRGIVGGVFSLILSLFVSGYMVADSKTLVKSFVQLFPYPWNERLAAQAQPV 208

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV-PSHVALGVITAIMAMIPGGAPIS-FTAV 265
            + + S   G  I++   G+ + +     G+    + LG I     +IP   PI      
Sbjct: 209 GRRMGSYIRGRLIVSAILGVSITTCLGFLGLKDYALGLGAIAGFTNLIPFLGPILGAIPA 268

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            +  L KG       L L+  I   +    L P LVG  + +  L     ++ GV+ +GL
Sbjct: 269 LVVALAKGGFLFFWVLLLY-VIVQNLETYVLDPLLVGSSVGVHPLYQLLSVLAGVQLLGL 327

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G  I P   A IA + +   +  K   E+
Sbjct: 328 IGALIVPPWFAGIAALVENLYLEPKRLAEQ 357


>gi|167766810|ref|ZP_02438863.1| hypothetical protein CLOSS21_01318 [Clostridium sp. SS2/1]
 gi|317498800|ref|ZP_07957088.1| sporulation integral membrane protein YtvI [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|167711564|gb|EDS22143.1| hypothetical protein CLOSS21_01318 [Clostridium sp. SS2/1]
 gi|291560611|emb|CBL39411.1| sporulation integral membrane protein YtvI [butyrate-producing
           bacterium SSC/2]
 gi|316893935|gb|EFV16129.1| sporulation integral membrane protein YtvI [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 381

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 57/321 (17%), Positives = 110/321 (34%), Gaps = 8/321 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKG----FFAPVLSALIIGFTSWPIYSSFISKKE 56
           M+   +    IM  +++    + L F+      F  P ++  II   + P+      K +
Sbjct: 1   MKRWEIYLDIIMELLVILAGALLLIFVLPKSIVFLWPFVAGWIISMMAHPVIEYLEKKVK 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
               F + I   +V+   IV L F      L++   +          +            
Sbjct: 61  LPKKFGSAILIAAVITGIIVVLYFAVRGIALQVIGFIQDAPDIRHEIMRQGMIFQKKIEQ 120

Query: 117 MWASELWTKHLSHPQSLKILSETFLK--TNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
             +    +      Q    + E F K  ++  D+    A           L ++ M+ A 
Sbjct: 121 FLSILPPSFGKQFDQWSGSIGELFKKAASSAGDYGVAHAGGVAKGVTSGLLGLVVMLFAA 180

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           + F  +   +    +               +    V+ S  L    I I    +L   ++
Sbjct: 181 YMFSLEREKLIAWYEKCIPGFVKHKINVFMKNSVGVLVSYCLAQLKIMIVIIAILWIGFF 240

Query: 235 LAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
           +AG+       V+  I+ + P  G        +I+ LI G+I  A  L +  AI L +  
Sbjct: 241 IAGIGHSFIYSVLVGIVDIFPILGTGTVIIPWAIFKLITGDIKTAVILLIIYAICLVLK- 299

Query: 294 KTLRPFLVGGPIKLPFLPTFF 314
           + L+P ++G  + +  L T F
Sbjct: 300 QVLQPKMMGDSMGISALTTIF 320


>gi|260892486|ref|YP_003238583.1| sporulation integral membrane protein YtvI [Ammonifex degensii KC4]
 gi|260864627|gb|ACX51733.1| sporulation integral membrane protein YtvI [Ammonifex degensii KC4]
          Length = 351

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 56/340 (16%), Positives = 116/340 (34%), Gaps = 14/340 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +   +++  +L  L +L     P L   ++     P+      +          +A +  
Sbjct: 16  VAGAILIAAVLWLLRYLLPVLLPFLIGAVLALFLEPLVRPLERRLP--RGVAVFLAMLLF 73

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +    +    L  Y  +E+ +L   +   A +    + +W +      W  E +      
Sbjct: 74  LLFLGLVFTLLGVYLAVELGDLAGSIPTYALEAQGKLFQWFN------WLRERYGALPPE 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFAS---RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                 ++   L  +   +    A+    F      + L +    +A +F  RD + +  
Sbjct: 128 AARYLEMTLNALAASAQKWAASLATSLISFFGAVPGFFLIVFVSFLATYFIGRDRYLLES 187

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
               L    +      + R               +     LV     WL+GV   + LG+
Sbjct: 188 WWQRLWPQPWGETSLNLLRRTSTAFWGYLKAQFFLVSLTALVTTIGLWLSGVKYALTLGL 247

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +T ++ ++P  G    F     Y    G +     L L      FI+ + L   +V   +
Sbjct: 248 LTGLLDLLPVLGPSTLFLPWIAYSFFTGCVPLGIKLSLVYG-ATFIIRQLLEARVVAFTL 306

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
               L   FG+  G++ +G  GL +GPV + +I  +++  
Sbjct: 307 GAHPLAVLFGMYAGLKLIGPGGLILGPVTVIVIQALYRAW 346


>gi|227500192|ref|ZP_03930261.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
 gi|227217714|gb|EEI83018.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
          Length = 402

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/346 (12%), Positives = 111/346 (32%), Gaps = 12/346 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS------TFLAVIATVSVMC 72
           +++  +  ++ F    + A ++                          F   I+ + ++C
Sbjct: 34  LLVQVVGVMEPFIIGGMIAYVVSIPMNFFERKLEEYFPNEKYKKKFAGFSLGISCILIIC 93

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
             I+ L  L    +  +    ++     +         +      +A + +    S    
Sbjct: 94  ALILFLNILIPRIITVIFSFFNRWPEFIRETYDTLN--NHSLTRPYADKFYDYVNSFGWY 151

Query: 133 LKILSETFL----KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               +        KT+   F     +  G         I+F I  L +      + ++ +
Sbjct: 152 EVRNAVMNFISGKKTDLFSFTTGILNSVGSSIFTIFTIIVFSIFVLVYKNMLKTNGTRIM 211

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            ++       Y  K+  +     +       I  +    +     ++  +P+   + +  
Sbjct: 212 YAILSEKKADYLNKVFSLSYNTFKDYIFSRLIAVVTLSGLTFLGMFIMKIPNAGIISLFV 271

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            +  +IP   PI+   +S  ++   +   A    ++  I   I +  + P + G  I LP
Sbjct: 272 GVSDLIPIFGPITGAGLSAVIIFLESPIKALIFVIYDVIIQQIQENIIYPAIAGEKIGLP 331

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            +     +  G    G+ G+ IG  + ++I  ++ E I    + K 
Sbjct: 332 AVWVLASITIGGSLFGIWGMLIGIPVASVIYTLFHEFIDNKLKEKN 377


>gi|148670304|gb|EDL02251.1| RIKEN cDNA D730040F13, isoform CRA_a [Mus musculus]
          Length = 789

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 9/190 (4%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDG---FSISQQLDSLGEHLFPAYWKKIS-RIVPKVIR 212
           G   L++ LS+I  +  LF+        +   + + SL     P     I  + V + IR
Sbjct: 559 GTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIR 618

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI 271
             F     +A   GL     + + G+        + AI+  +P  G   +     + L +
Sbjct: 619 GVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWL 678

Query: 272 KGNIF-NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +   A  L ++  +  + VD  +   + GG        T   + GG   +GL G  I
Sbjct: 679 TQGLGCKAILLLVFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAII 735

Query: 331 GPVLMALIAV 340
           GP+L+ ++ V
Sbjct: 736 GPILLCILVV 745


>gi|282901613|ref|ZP_06309531.1| protein of unknown function UPF0118 [Cylindrospermopsis raciborskii
           CS-505]
 gi|281193489|gb|EFA68468.1| protein of unknown function UPF0118 [Cylindrospermopsis raciborskii
           CS-505]
          Length = 360

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 62/369 (16%), Positives = 132/369 (35%), Gaps = 24/369 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKG---FFAPVLSALIIGFTSWPIYSSFISKKE- 56
           M  T   P+ +   +   II+V+ + L     +F P++S +++      + +  I     
Sbjct: 1   MEMTNKLPRWLTFALAFPIIIVNGWLLIQVIKYFQPLVSVVVLAILLSFVLNYPIKFFHN 60

Query: 57  -ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
                 LA++  + +  + +  +  +    + +    +  +         +P W+S    
Sbjct: 61  LGIPRILAIVGVLLLTVVMLGAIGVILLPLIFQQLNELINI---------LPAWISSGTQ 111

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD---YCLSIIFMII 172
            + A   W           I   T L     + I  F  +      D   + L++I  I+
Sbjct: 112 QLQAFLDWAATQQDLPVNIIGIATQLLEKISNQIQSFTGKILTFAFDTIGFLLNLILTIV 171

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
              +   +G  +   L             K   ++ +  ++ F+G   +    G+ +   
Sbjct: 172 LTIYLILNGEKLWDGLYGWLPTYLGV---KARALLKEDFQNYFIGQATLGAVLGVTVTLT 228

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           +    +P  +  G+     ++ P G  I    VS+ L+   N + A  + L       I 
Sbjct: 229 FIALKIPLALLFGITIGFFSLFPFGTGIGIGIVSL-LIALENFWQAVEVALIAVTIDQIN 287

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL---IAVIWKESIMAI 349
              + P L+G    L  +     L+ G +  G+LGL I   + +     A IW+E  +  
Sbjct: 288 SNIVAPRLLGSLTGLNPVWVVISLLVGAKLGGVLGLLIAIPIASFIKDFADIWREGQLQT 347

Query: 350 KENKEKISS 358
              + KI++
Sbjct: 348 DSMQGKITT 356


>gi|123228032|emb|CAM27763.1| likely ortholog of H. sapiens chromosome 9 open reading frame 5
           (C9orf5) [Mus musculus]
 gi|123239759|emb|CAM24765.1| likely ortholog of H. sapiens chromosome 9 open reading frame 5
           (C9orf5) [Mus musculus]
          Length = 876

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 9/190 (4%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDG---FSISQQLDSLGEHLFPAYWKKIS-RIVPKVIR 212
           G   L++ LS+I  +  LF+        +   + + SL     P     I  + V + IR
Sbjct: 646 GTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIR 705

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI 271
             F     +A   GL     + + G+        + AI+  +P  G   +     + L +
Sbjct: 706 GVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWL 765

Query: 272 KGNIF-NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +   A  L ++  +  + VD  +   + GG        T   + GG   +GL G  I
Sbjct: 766 TQGLGCKAILLLVFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAII 822

Query: 331 GPVLMALIAV 340
           GP+L+ ++ V
Sbjct: 823 GPILLCILVV 832


>gi|228907670|ref|ZP_04071527.1| UPF0118 membrane protein [Bacillus thuringiensis IBL 200]
 gi|228852162|gb|EEM96959.1| UPF0118 membrane protein [Bacillus thuringiensis IBL 200]
          Length = 337

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 56/341 (16%), Positives = 122/341 (35%), Gaps = 25/341 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +G  R++++ I+ + LY LK     +L   I+ F           K + +   +    
Sbjct: 9   RSRGFQRFLVLIIVALVLYALKSMINLILITFILTFLMDRFQRFISRKLKVNRKIVIACL 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++      L        +++ +L+ +  L  Q+           P      +     
Sbjct: 69  YIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQN-----------PPDNEIVKYALST 117

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           ++  +  K + +      G+D I +  +  G + L   LS+I  +  L     +   I  
Sbjct: 118 INGMEVSKYIEQ------GVDVIYQSIANIGKVSLQILLSLILSLFFL----LEKERIIT 167

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 +     ++++I+    +  RS         +IA+   ++   A  + G P  + 
Sbjct: 168 FTSKFKDSKLKIFYEEIAYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLLV 227

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L V+  ++ +IP  G  IS   + I     G +     + ++  +   +    L P  + 
Sbjct: 228 LAVMVFLLGLIPVAGVIISLFPLCIIAYNVGGVMYVVYILVFITVIHALESYFLNPKFMS 287

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               LP   TF  L+     +G+ GL IG  +   +  +  
Sbjct: 288 AKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLD 328


>gi|134102038|ref|YP_001107699.1| integral membrane protein [Saccharopolyspora erythraea NRRL 2338]
 gi|133914661|emb|CAM04774.1| integral membrane protein [Saccharopolyspora erythraea NRRL 2338]
          Length = 385

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 102/312 (32%), Gaps = 18/312 (5%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSW----PIYSSFISKKEESSTFLAVIATV 68
           R +++   +    ++  + A V   ++I         P  +    K    +   A++  V
Sbjct: 14  RVLVVAAAVGLAGYVLTYLAAVAMPVVIALLLAALLGPFSNWLTGKGAPRALATALVVCV 73

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ +  V L  +    + ++  L ++V    + G     WL   P  +   +L      
Sbjct: 74  GLISVTGV-LALVVGTVVADLPRLQAQVSNTLESG---EAWLRLGPLRLDQRQLDELVND 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +L+      +       +   A   G +     L    ++  L FF  DG  I   L
Sbjct: 130 ATATLQTHQGGIISG-----VLSTAVTSGEVLGGALL----VLFTLIFFLYDGDRIWNFL 180

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                           R     +         +A  + + +G +  L GVP   AL  + 
Sbjct: 181 LRGFPLGSRDRVDLAGRSGFDALTGYVRATAAVACMDAIGVGVSAALIGVPLAPALAALV 240

Query: 249 AIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A +P    +    +++ + L+    + A  +     +   +    L+P L+G    L
Sbjct: 241 FLGAFVPYLGILITGTLAVLVCLVTVGFWPAVLMAAIVIVVTQLEGHVLQPLLLGRASHL 300

Query: 308 PFLPTFFGLVGG 319
             L     +  G
Sbjct: 301 HPLAVVLSISVG 312


>gi|330508909|ref|YP_004385337.1| hypothetical protein MCON_3237 [Methanosaeta concilii GP-6]
 gi|328929717|gb|AEB69519.1| protein of unknown function (DUF20) [Methanosaeta concilii GP-6]
          Length = 356

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/298 (13%), Positives = 104/298 (34%), Gaps = 19/298 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +IL+S YFL      ++  ++  +   P+   F  +++        I +++ +   I 
Sbjct: 20  LLLILLSSYFLWPLQDGIVLGIVFTYLGRPVRDLFGKRRQ--------IGSLAAIICIIA 71

Query: 77  PLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           PL  +F  G+ E    +  +     Q       ++S I    +  +  ++ + +   + +
Sbjct: 72  PLSIIFAAGVFEAASQLRWLQSHRAQIVATGQEFISSIYIPQFIFDELSRGMDNLMGIGL 131

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T L               G       L+++      ++   DG  +           
Sbjct: 132 SMLTSLP----------VFDLGTTLTLGLLNLLIAFCVCYYLLVDGDRLLGATIDFLRQK 181

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
              +  +    +  ++   + G    A+   +     ++L  +P  +A+  I  +  ++P
Sbjct: 182 KGDFELRCLGRIDGILSGIYTGSISTAMVYAIASVPIFYLFDIPRPLAMASIILLAGVVP 241

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
               + F   ++   I+     A   F   ++ +  V+  +RP++V     +  +   
Sbjct: 242 FLTWLVFLLTAVSRYIEMGPMEAAVFFFAASVLVAAVELVVRPYIVYARSSIHPMLVL 299


>gi|206970693|ref|ZP_03231645.1| membrane protein [Bacillus cereus AH1134]
 gi|206734329|gb|EDZ51499.1| membrane protein [Bacillus cereus AH1134]
          Length = 340

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/338 (16%), Positives = 117/338 (34%), Gaps = 19/338 (5%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +G  R++++ I+ + LY LK     +L   I+ F           K + +   +    
Sbjct: 9   RSRGFQRFLVLIILTLVLYGLKSMINLILITFILTFLMNRFQRFISKKLKMNRKVVIACL 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++   +  L        +++ +L+ +  L  QH  P    +  I   +   E+    
Sbjct: 69  YIILVTFIVTTLYKYLPVLTIQISQLIYQFKLFFQH-PPDNEMIRYILSAINEMEVSKYI 127

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                 +        K +    +    S F ++  +  +S                    
Sbjct: 128 EQGVDVIYQSIANIGKVSLQIILSLILSLFFLLEKERIISFT-------------SKFKD 174

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
               +       + ++ +R   KVI + F    +IA+  G++   A  + G P  + L V
Sbjct: 175 SKLKIFYEEIAYFGERFARSFGKVIEAQF----LIAVVNGVLTVIALVILGFPQLLVLTV 230

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +  ++ +IP  G  IS   + I     G +     + ++  +   +    L P  +    
Sbjct: 231 MVFLLGLIPVAGVIISLFPLCIIAYNVGGVMYVVYILVFITVIHALESYFLNPKFMSAKT 290

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            LP   TF  L+     +G+ GL IG  +   +  +  
Sbjct: 291 NLPVFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLD 328


>gi|332171526|gb|AEE20781.1| protein of unknown function UPF0118 [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 379

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 120/335 (35%), Gaps = 18/335 (5%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           Y ++     +  A ++     PI        + S T+ +V+  + ++ + +  L      
Sbjct: 45  YTIQSVIVYLAVAAVLSLVGRPIVKFLRYSLKFSPTWASVVTILLLIMIIMGVLALFIPV 104

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + + + L      +  +   V   ++ +  G  A+      ++  Q ++     F+K  
Sbjct: 105 VIDQSQHL------SQINFDDVKVNINRL-YGEIAAYFGINKMTIIQGVQQ--ADFVKNF 155

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               IP F +          + I  +I   FFF +D   +   L           + ++ 
Sbjct: 156 DFGIIPTFLNSILGNLGAAGIGIFAIIFITFFFLKDNRLLINSLLVFARRGNEGKFLRVF 215

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
             +  ++   F+G+ I      ++        G+ + +A+ +  A++ ++P   P+    
Sbjct: 216 EKIKYLLSRYFIGLIIQVFTMFVLYAIILLSFGIDNALAIALFCAVLNLVPYIGPLVGGG 275

Query: 265 VSIYLLIKGN--------IFNATCLFLWGAIELFIVDKT-LRPFLVGGPIKLPFLPTFFG 315
           V + L+   N        I               +VD   ++PF+ G  +K   L  F  
Sbjct: 276 VMLLLVTSSNINMDFRTVILPKLFWIFICYGAAQMVDNFIIQPFVFGNSVKSHPLEIFLA 335

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++      G+ G+ +   +   + VI KE +   K
Sbjct: 336 IIIAGLLFGVFGMILAVPVYTALKVISKEFLSEYK 370


>gi|302384825|ref|YP_003820647.1| sporulation integral membrane protein YtvI [Clostridium
           saccharolyticum WM1]
 gi|302195453|gb|ADL03024.1| sporulation integral membrane protein YtvI [Clostridium
           saccharolyticum WM1]
          Length = 367

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/362 (14%), Positives = 130/362 (35%), Gaps = 17/362 (4%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE----ESSTFLA 63
            + ++   +   +  S  +L     P L A +   +  P       K           + 
Sbjct: 9   KKTLLILGVTGAVYFSFRYLLPLVIPFLIAYVFALSLRPSALWIERKTRFAIKGREISVP 68

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           +     +  +  + +  +  Y     +++  +  L  Q+   +   +        +    
Sbjct: 69  LAMIGGIEIILFMIVFGIILYVG--GRKIFMEARLLLQNLPVILGEIDRWLMDNCSFAER 126

Query: 124 TKHLSHPQSLKILS------ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
              L     ++++       +  +K   + F+   +       +   + +I ++IA    
Sbjct: 127 FLKLPDGYMVEVVRDIISGGQVAIKGRIMPFLMVNSMTIMKWMVQATVILIILLIATVLS 186

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            ++   I ++ D+    +F   +  + R +  V  +       I +   +V     +L G
Sbjct: 187 LQEMDEIRERRDN---SIFCFEYAMLGRRLTTVGSAWLKTQGAIMLFTMVVCSIGLFLLG 243

Query: 238 VPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
            P  +  G+   ++  +P  G    F   +++ +I  N    T L L   I  F+ +  +
Sbjct: 244 NPYFILFGIGIGLLDALPIFGTGTVFIPWALFSMINKNWKYGTGLILIYVICYFLRE-IM 302

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
              ++GG + L  L T   +  G++  GLLG  +GP+ + ++  I +   ++   + +K 
Sbjct: 303 EAKIMGGKVGLTPLETLASMYVGLQLFGLLGFILGPIGLLIVEDIVEVYEVSYCHDGKKG 362

Query: 357 SS 358
           + 
Sbjct: 363 AD 364


>gi|307728543|ref|YP_003905767.1| hypothetical protein BC1003_0473 [Burkholderia sp. CCGE1003]
 gi|307583078|gb|ADN56476.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1003]
          Length = 358

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 54/343 (15%), Positives = 130/343 (37%), Gaps = 9/343 (2%)

Query: 5   MLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
               +    W+ + + + + L+ L     P L   I+ +   P  +  + ++   +    
Sbjct: 9   TPVQRRAFIWLAIALGVGILLWLLSPVLTPFLLGAILAYILQPGVAWMVRRRVPRALAAL 68

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++  +  + + ++  L +F     E  +L  +V L   H     +    + G   + +  
Sbjct: 69  LMMLLFTLLMTLL-ALLVFAVIQKEGPQLRQQVPLLFTHVNAWLQPKLALLGLADSLDFA 127

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
           +        L+  ++T  +      +         + +    ++I + + LF+   D   
Sbjct: 128 SVRDLVMGQLEGSAQTVARYAWTSIVTSS-----NVMMAVVGNLIMVPLVLFYLLYDWNR 182

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  ++ S+    +     +++R + +++     G  ++     +   +A  +AG    + 
Sbjct: 183 MLLRVQSVVPRRWLDKTLQLARDMDQMLSQYLRGQLLVMGVLAVFYAAALSIAGFEIALP 242

Query: 244 LGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +G+ T +   IP  G A     A+   LL  GN +    + L   +   +    L P LV
Sbjct: 243 VGIFTGLAVFIPYVGFATGLALALLAALLQFGNWYGFGAVALIYGVGQIVESFFLTPRLV 302

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           G  I L  L   F L+   +  G  G+ +   + A+++V  +E
Sbjct: 303 GERIGLHPLAVIFALLAFGQLFGFFGVLLALPVSAILSVAVRE 345


>gi|312870325|ref|ZP_07730452.1| putative membrane protein [Lactobacillus oris PB013-T2-3]
 gi|311094146|gb|EFQ52463.1| putative membrane protein [Lactobacillus oris PB013-T2-3]
          Length = 369

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 58/377 (15%), Positives = 137/377 (36%), Gaps = 39/377 (10%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGF----------FAPVLSALIIGFTSWPIYSS----- 50
           +N Q +   + +F++ +++ F   F            P+L   +I +    +        
Sbjct: 5   VNRQHVSLALALFVLYLAIVFWPHFAKWCTTIFAAMTPLLIGAVIAYIVNLLLRKYEQLY 64

Query: 51  -----------FISKKEESSTFLAVIATVSVMCLFIVP-LLFLFYYGMLEMKELVSKVVL 98
                      F        ++L++   ++++   ++P L+      +    +++++ + 
Sbjct: 65  RRLFKGPRAKKFQRLWGIFLSYLSIFLILAIVIRLVIPELISCVQLLINNHSKVITRFIT 124

Query: 99  ANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGM 158
           A +H   +                  +HLS  ++ K+LS  F  T  +  +   AS    
Sbjct: 125 AFEHNSNLQEVFKQFDV---------RHLSWSKAEKVLSYGFSGT--VKALMSTASSVVS 173

Query: 159 IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
           +     ++  F I  L +        ++ +D+    +       + R       +   G 
Sbjct: 174 VATTSIVAFFFSIYLLIYKEMLARQCTRLIDAYLGKIKRPLM-YVIRTFDNCYSNYIAGQ 232

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA 278
              A   G+       +  +P    +GV+TAI A+IP    I   ++ + L+   +   A
Sbjct: 233 CKDAAILGIACFIGMSILRMPYATMIGVVTAIGALIPIIGAILGASIGVVLIFAVSPLKA 292

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
               ++  +   + ++   P +VG  I LP +  F  ++ G    G+LG+ +   L A +
Sbjct: 293 GIFLIFIIVLQQLDNRITYPLVVGKSIGLPSVWVFAAVIIGGSISGILGMMLTVPLFAAL 352

Query: 339 AVIWKESIMAIKENKEK 355
             I    +   +   ++
Sbjct: 353 YQIIATDVGKRERPGQE 369


>gi|227883620|ref|ZP_04001425.1| membrane protein [Escherichia coli 83972]
 gi|300985174|ref|ZP_07177311.1| conserved hypothetical protein [Escherichia coli MS 45-1]
 gi|300987373|ref|ZP_07178181.1| hypothetical protein HMPREF9553_03226 [Escherichia coli MS 200-1]
 gi|301050301|ref|ZP_07197190.1| conserved hypothetical protein [Escherichia coli MS 185-1]
 gi|227839499|gb|EEJ49965.1| membrane protein [Escherichia coli 83972]
 gi|300297930|gb|EFJ54315.1| conserved hypothetical protein [Escherichia coli MS 185-1]
 gi|300306241|gb|EFJ60761.1| hypothetical protein HMPREF9553_03226 [Escherichia coli MS 200-1]
 gi|300408203|gb|EFJ91741.1| conserved hypothetical protein [Escherichia coli MS 45-1]
 gi|315291775|gb|EFU51131.1| conserved hypothetical protein [Escherichia coli MS 153-1]
 gi|315295956|gb|EFU55265.1| conserved hypothetical protein [Escherichia coli MS 16-3]
          Length = 376

 Score = 71.0 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 114/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +       +A   V
Sbjct: 41  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITIV 95

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E +S +   N+                       + +   
Sbjct: 96  VVVMLIALTALVGVLAASFNEFISMLPRFNKELT--------------RKLFKLQEMLPF 141

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++  
Sbjct: 142 LNLHMSPERILQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMR- 200

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+  +
Sbjct: 201 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGIIVWLGLELMGVQFALMWAVLAFL 259

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA IS     I +L+   I+    +     +   ++   L P ++G  + +  
Sbjct: 260 LNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGMST 319

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 320 MVVFLSLLIWGWLLGPVGMLL 340


>gi|146277003|ref|YP_001167162.1| hypothetical protein Rsph17025_0956 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555244|gb|ABP69857.1| protein of unknown function UPF0118 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 349

 Score = 71.0 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 73/249 (29%), Gaps = 3/249 (1%)

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
               +  ++    + S +  A             +P  + +        S   SL     
Sbjct: 57  AIALFILLVTAGLIGSFLAFAPAMLEQADELARQLPPALESLRDRISSFSWGPSLLGRLA 116

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                +G      FAS           + + ++    +   D     + L +L       
Sbjct: 117 PSRLMSGE---GGFASTAVSATFGAIGNFVIILFVGLYAAIDPGLYRRGLRALLSPELRP 173

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             +++  +    +R+   G  I     GL      WL G+P    LG+I AI+  IP   
Sbjct: 174 RGEEVMDVAGHTLRNWLGGQLISMSFVGLFTWLGLWLIGIPLAFILGLIAAILTFIPNIG 233

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P+     ++ L +         +         +    + P +    + LP        + 
Sbjct: 234 PVLSAVPALLLAMPEGWSQVGLVLAVFLTVQAVESYVVTPIIQKERVSLPPALIISAQLL 293

Query: 319 GVRTMGLLG 327
                GL+G
Sbjct: 294 MGVLFGLMG 302


>gi|194225616|ref|XP_001916341.1| PREDICTED: similar to likely ortholog of H. sapiens chromosome 9
           open reading frame 5 (C9orf5) [Equus caballus]
          Length = 877

 Score = 71.0 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 9/190 (4%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDG---FSISQQLDSLGEHLFPAYWKKIS-RIVPKVIR 212
           G   L++ LS+I  +  LF+        +   + + SL     P     I  + V + IR
Sbjct: 647 GTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIR 706

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI 271
             F     +A   GL     + + G+        + AI+  +P  G   +     + L +
Sbjct: 707 GVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAIPAVLDLWL 766

Query: 272 KGNIF-NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +   A  L ++  +  + VD  +   + GG        T   + GG   +GL G  I
Sbjct: 767 TQGLGCKAILLLVFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAII 823

Query: 331 GPVLMALIAV 340
           GP+L+ ++ V
Sbjct: 824 GPILLCILVV 833


>gi|331649281|ref|ZP_08350367.1| putative membrane protein [Escherichia coli M605]
 gi|331041779|gb|EGI13923.1| putative membrane protein [Escherichia coli M605]
          Length = 376

 Score = 71.0 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/333 (14%), Positives = 118/333 (35%), Gaps = 26/333 (7%)

Query: 3   ETMLNPQGIMRWMI----MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES 58
           ET    +  MR ++    + +IL  ++        +L AL       P+ + FI +  + 
Sbjct: 29  ETPQPDKTGMRILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQR 88

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                 +A   V+ + ++ L  L         E +S +   N+                 
Sbjct: 89  P-----VAITIVVVVMLIALTALVGVLAASFNEFISMLPKFNKELT-------------- 129

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                 + +    +L +  E  L+    + +  F +           S++ +++ + F  
Sbjct: 130 RKLFKLQEMLPFLNLHMSPERILQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFML 189

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            +   +  ++     +    +   + R +  V     L   + ++  G+++     L GV
Sbjct: 190 FEVRHVPYKMR-FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGIIVWLGLELMGV 247

Query: 239 PSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
              +   V+  ++  +P  GA IS     I +L+   I+    +     +   ++   L 
Sbjct: 248 QFALMWAVLAFLLNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILE 307

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           P ++G  + +  +  F  L+     +G +G+ +
Sbjct: 308 PRMMGHRLGMSTMVVFLSLLIWGWLLGPVGMLL 340


>gi|154495831|ref|ZP_02034527.1| hypothetical protein BACCAP_00111 [Bacteroides capillosus ATCC
           29799]
 gi|150275029|gb|EDN02077.1| hypothetical protein BACCAP_00111 [Bacteroides capillosus ATCC
           29799]
          Length = 377

 Score = 71.0 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/337 (14%), Positives = 104/337 (30%), Gaps = 13/337 (3%)

Query: 24  LYFLKGFFAPVLSALIIGF-------TSWPIYSSFISK---KEESSTFLAVIATVSVMCL 73
            + + G F P+     I F           +Y   + +   K  S       + + +  L
Sbjct: 33  FWTVIGLFQPLFIGFAIAFVLNRSCQLFSQLYDRGLGRTKAKNLSRPLAVATSYLLMFVL 92

Query: 74  FIVPLLFLFYYGMLEMKELVSKVV---LANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
            I     +    +  ++  ++ +    L  Q  +    WL+ +   +   +L   + S  
Sbjct: 93  IIAFFSLVLPKLVESIQIFLNSINGYMLNIQIWLNKQEWLAPLFSSLHLDKLDLSNFSDL 152

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
               +       T  +  +    S    I +   LSIIF +  L           + L +
Sbjct: 153 IKGALNGVVNTLTTAVPQLLTITSNIISIVVTGFLSIIFSVYMLSGKATLLSQCRRVLKA 212

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                  A+   +  +      +   G  I A   G +               +GVI   
Sbjct: 213 YAPPKVEAWVTDVVHLTANTFTAFVSGQLIEACILGGLTALGMLFIQADYAPLIGVIVGA 272

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            A+IP        AV+  LLI  +        ++           + P +VG  + LP +
Sbjct: 273 TALIPMVGAFLGGAVAAVLLIMVSPLKTLIFLIFLLCLQQFEGNVIYPRVVGNNVGLPAI 332

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
                +  G      +G+ +   + +++  + +  + 
Sbjct: 333 WVLAAVTVGGGLFQFVGILVSVPVASVLYTLLRRDVH 369


>gi|114566019|ref|YP_753173.1| hypothetical protein Swol_0467 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114336954|gb|ABI67802.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 339

 Score = 71.0 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/315 (14%), Positives = 112/315 (35%), Gaps = 14/315 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +++   +  L+ ++          ++ +  +    SF+ +K     +  ++  + ++ +
Sbjct: 15  IVVVLATIYFLFLVREVLLTFFLGAVLAYLLFRP-ISFLERKGLKRVWAILLLYLLLLTV 73

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           F +         ++E+ ++   +         + + +  +  G     L          L
Sbjct: 74  FSLFFSLAVPAMVVELNQMAGILPDYADQARNMAKSIDGMELGKLTPVLKENLNQIENKL 133

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
               + FL                  FL   L++ F  I  F+   D   I      L  
Sbjct: 134 FEGLKNFLGG-------------FYSFLGKFLALAFSPILAFYIINDWEKIRDSFLGLFS 180

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
             F    K +   + + +     G  IIA   G+  G+A  L GV   + +G++  +  +
Sbjct: 181 PSFRREIKAVLDKIDEALIEFLKGHLIIATFVGIFTGTAAALLGVKFPLLIGLVAGVADL 240

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +P          +I + +  ++  +  + L   I   +    + P ++GG + +  L   
Sbjct: 241 VPYFGAFLGGFFAILIALSESLQLSLYMGLAVVIIQQVESNIITPRIMGGKLGMHPLLIV 300

Query: 314 FGLVGGVRTMGLLGL 328
           F L+ G + MG+ G+
Sbjct: 301 FALLAGGKLMGIWGM 315


>gi|115523770|ref|YP_780681.1| hypothetical protein RPE_1753 [Rhodopseudomonas palustris BisA53]
 gi|115517717|gb|ABJ05701.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           BisA53]
          Length = 412

 Score = 71.0 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 61/333 (18%), Positives = 121/333 (36%), Gaps = 16/333 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++  +++ +I+ +LY  K FF P+++A ++G    P       ++            VS 
Sbjct: 78  VLLALLIIVIVAALYVAKPFFLPIVTAFVVGTMLSPAAGFLEQRRIPRG--------VSA 129

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +  +    + +   L    +V       + G+ +   L    G +   +     L +P
Sbjct: 130 VLIVGIGFGVVTFIVTLIAAPVVEWSGRLPELGVKLKEKLQAFDGTIVLWQQLQAALGNP 189

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                    F     +     F S      L + ++++  I +    ++D       + +
Sbjct: 190 DHAVATPIQFPTIEWMQPTYEFLSPTLTEMLLFLVTLVLFIAS----WKDLRR--ALVMT 243

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                      +I   +   + S  L +T I +G G V G   WLAG+P+  ALG + A 
Sbjct: 244 SPNRDTRLRALRILNEIEGSLGSYLLTVTSINLGYGAVTGLICWLAGMPNPAALGALAAT 303

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLF--LWGAIELFIVDKTLRPFLVGGPIKLP 308
           +   P   P     +   + I         L   L  A+  F+    + P ++G  + L 
Sbjct: 304 LNFFPVIGPFVMLIILTLVGIVSFPTLGAGLLAPLGFALLTFVEGHFITPAIIGRRLSLN 363

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L  F  L       G +G F+   L+ +  V+
Sbjct: 364 ILAVFITLAFWTWLWGPMGGFLASPLLIVALVL 396


>gi|327481481|gb|AEA84791.1| PerM family membrane protein [Pseudomonas stutzeri DSM 4166]
          Length = 358

 Score = 71.0 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/350 (12%), Positives = 118/350 (33%), Gaps = 12/350 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+    + + ++  +++F+    +  L    APVL+ L++ F    +  +   ++     
Sbjct: 9   MQRYFSDEEAVVLAVLLFLAFAIVLTLGKMLAPVLAGLVLAFLMQGLVGAMERRRVPHLL 68

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            + ++  + V  L +  L  +              + L N+    +  W S +       
Sbjct: 69  AVWLVFLMFVGVLVVCTLFIVPLL-------WQQVLTLFNELPRMLVEWQSLLLLLPERY 121

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                     + +  +     +      +   +     + +   + ++ + I +FFF +D
Sbjct: 122 PQLVTEEQVLRGIDFMRGEIGRY--GQLVLTSSLSSLPLLIGLMIYLVLVPILVFFFLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              IS  +             ++S+ +   I +   G  I  +   +V  + +   G+  
Sbjct: 180 REQISNWIKGYLPRERGL-ITQVSQEMNLQIANYIRGKAIEILICAVVSYAVFAALGLNY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATC-LFLWGAIELFIVDKTLRP 298
              + ++  +  ++P  GA +    +++  + +  + +    L +  AI   +    L P
Sbjct: 239 AALMAMLVGVSVVVPYIGATVVTIPIALIGIFQWGLGDQFFYLMVAYAIIQTLDGNVLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            L    + L  +     ++      G  G+F    L  L   +       
Sbjct: 299 LLFSEAVNLHPVAIICAVLLFGGLWGFWGVFFAIPLATLFKAVLYAWPRE 348


>gi|314923826|gb|EFS87657.1| conserved hypothetical protein [Propionibacterium acnes HL001PA1]
 gi|314966159|gb|EFT10258.1| conserved hypothetical protein [Propionibacterium acnes HL082PA2]
 gi|314982024|gb|EFT26117.1| conserved hypothetical protein [Propionibacterium acnes HL110PA3]
 gi|315090838|gb|EFT62814.1| conserved hypothetical protein [Propionibacterium acnes HL110PA4]
 gi|315095050|gb|EFT67026.1| conserved hypothetical protein [Propionibacterium acnes HL060PA1]
 gi|315104283|gb|EFT76259.1| conserved hypothetical protein [Propionibacterium acnes HL050PA2]
 gi|327328171|gb|EGE69940.1| hypothetical protein HMPREF9341_01223 [Propionibacterium acnes
           HL103PA1]
          Length = 404

 Score = 71.0 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 107/336 (31%), Gaps = 28/336 (8%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFF-------APVLSALIIGFTSWPIYSSFISKK 55
           E   +  G+ +  I+ + + + +    F        AP+   L +  T++PI++  +  K
Sbjct: 49  EVATSKHGLPKLTIVLLTVAAAWLGLSFLHELSSVVAPLFFGLNLLITAYPIHTWLVKHK 108

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
                  A  A  +V+ +    ++ + +     + +L S                  IP 
Sbjct: 109 CPR-WISATTAGTAVIVVLAAGVVGMVWSVAAMINQLQSY-----------------IPQ 150

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
                       +     + +    LK      +    +            II ++  + 
Sbjct: 151 MEKIYTQLLHWSTQLGYSQEVIADKLKKIDPQQVMSVVTSVASDTTSVVTMIIVILTGMI 210

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F   D   +  +L   G                  IR  +L  T+  +   L   +A  +
Sbjct: 211 FMVMDTPQMHDRLRMAGSR--KPVVVLALESFASGIRKYWLVTTVFGLIVALFDWAALLI 268

Query: 236 AGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
            GVP      + + +   IP  G  I     ++  L K     A  + +  ++  F++  
Sbjct: 269 IGVPLAGVWALFSFLTNYIPNIGFIIGVIPPALLALFKDGWVAAVVVVVSYSVLNFVIQS 328

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            ++P   G  + L    +F  L+      G LG  I
Sbjct: 329 IIQPKFAGDAVGLTPTMSFVSLLLWGWVFGALGTLI 364


>gi|153956495|ref|YP_001397260.1| hypothetical protein CKL_3913 [Clostridium kluyveri DSM 555]
 gi|219856798|ref|YP_002473920.1| hypothetical protein CKR_3455 [Clostridium kluyveri NBRC 12016]
 gi|146349353|gb|EDK35889.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
 gi|219570522|dbj|BAH08506.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 351

 Score = 71.0 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 116/335 (34%), Gaps = 6/335 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF-LKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M + +     I  + I++ IL   +F    +  P + A +              K +  S
Sbjct: 1   MNDLINKIDKISIFFIVYTILFLTFFNTLDYTLPFVLAFLCALLLRKPTIFISKKLKIKS 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL--VSKVVLANQHGIPVPRWLSDIPGGM 117
              ++I T+    + I  L+        E  +L   ++  ++         +        
Sbjct: 61  GIASLITTLVFFTIIITLLVLGITTISQEAIQLGKNTQAYISKNSTDIYNSFYKLQKYYN 120

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                    L    +  +   + +       +  +            + ++F ++  +FF
Sbjct: 121 DLDPYIINTLEKNFTNFVTKTSNIVVGFSGKLVSYIINLIATIPYILMVVLFTLLTTYFF 180

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            +D  S    + +L  +       KI     K++ +  L   II +   L     + +  
Sbjct: 181 TKDMSSSKINMQNLIPNNKTDKLLKIYSETKKMLGNYLLSYMIIILFTFLETIIVFLIFK 240

Query: 238 VPSHVALGVITAIMAMIP-GGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKT 295
           V   V L VI AI  ++P  G    +  ++ IYL++  N      L +   I + I+ + 
Sbjct: 241 VKYAVILSVICAIADLLPILGIGAIYIPIAFIYLIVFKNYVTFIGLLI-CYILVSIIRQI 299

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           + P +V   + +  +     L  G+++ G+ G+  
Sbjct: 300 IEPKIVSSSLGIHPVAVLAALFIGLKSNGISGMIF 334


>gi|30020062|ref|NP_831693.1| hypothetical protein BC1923 [Bacillus cereus ATCC 14579]
 gi|228952327|ref|ZP_04114415.1| UPF0118 membrane protein [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228958236|ref|ZP_04119965.1| UPF0118 membrane protein [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|229069498|ref|ZP_04202787.1| UPF0118 membrane protein [Bacillus cereus F65185]
 gi|229079130|ref|ZP_04211679.1| UPF0118 membrane protein [Bacillus cereus Rock4-2]
 gi|229127355|ref|ZP_04256351.1| UPF0118 membrane protein [Bacillus cereus BDRD-Cer4]
 gi|229144565|ref|ZP_04272968.1| UPF0118 membrane protein [Bacillus cereus BDRD-ST24]
 gi|229150183|ref|ZP_04278405.1| UPF0118 membrane protein [Bacillus cereus m1550]
 gi|229178354|ref|ZP_04305723.1| UPF0118 membrane protein [Bacillus cereus 172560W]
 gi|296502546|ref|YP_003664246.1| hypothetical protein BMB171_C1711 [Bacillus thuringiensis BMB171]
 gi|29895612|gb|AAP08894.1| hypothetical Membrane Spanning Protein [Bacillus cereus ATCC 14579]
 gi|228605084|gb|EEK62536.1| UPF0118 membrane protein [Bacillus cereus 172560W]
 gi|228633302|gb|EEK89909.1| UPF0118 membrane protein [Bacillus cereus m1550]
 gi|228638978|gb|EEK95405.1| UPF0118 membrane protein [Bacillus cereus BDRD-ST24]
 gi|228656188|gb|EEL12030.1| UPF0118 membrane protein [Bacillus cereus BDRD-Cer4]
 gi|228704147|gb|EEL56584.1| UPF0118 membrane protein [Bacillus cereus Rock4-2]
 gi|228713637|gb|EEL65523.1| UPF0118 membrane protein [Bacillus cereus F65185]
 gi|228801445|gb|EEM48333.1| UPF0118 membrane protein [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228807323|gb|EEM53854.1| UPF0118 membrane protein [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|296323598|gb|ADH06526.1| hypothetical protein BMB171_C1711 [Bacillus thuringiensis BMB171]
          Length = 337

 Score = 71.0 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 56/341 (16%), Positives = 122/341 (35%), Gaps = 25/341 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +G  R++++ I+ + LY LK     +L   I+ F           K + +   +    
Sbjct: 9   RSRGFQRFLVLIIVALVLYALKSMINLILITFILTFLMDRFQRFISRKLKVNRKIVIACL 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++      L        +++ +L+ +  L  Q+           P      +     
Sbjct: 69  YIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQN-----------PPDNEIVKYALST 117

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           ++  +  K + +      G+D I +  +  G + L   LS+I  +  L     +   I  
Sbjct: 118 INGMEVSKYIEQ------GVDVIYQSIANIGKVSLQILLSLILSLFFL----LEKERIIT 167

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 +     ++++I+    +  RS         +IA+   ++   A  + G P  + 
Sbjct: 168 FTSKFKDSKLKIFYEEIAYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLLV 227

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L V+  ++ +IP  G  IS   + I     G +     + ++  +   +    L P  + 
Sbjct: 228 LAVMIFLLGLIPVAGVIISLFPLCIIAYNVGGVMYVVYILVFITVIHALESYFLNPKFMS 287

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               LP   TF  L+     +G+ GL IG  +   +  +  
Sbjct: 288 AKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLD 328


>gi|75759897|ref|ZP_00739969.1| Hypothetical membrane spanning protein [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228939085|ref|ZP_04101681.1| UPF0118 membrane protein [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228969054|ref|ZP_04129975.1| UPF0118 membrane protein [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228971962|ref|ZP_04132581.1| UPF0118 membrane protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978574|ref|ZP_04138948.1| UPF0118 membrane protein [Bacillus thuringiensis Bt407]
 gi|74492599|gb|EAO55743.1| Hypothetical membrane spanning protein [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228781124|gb|EEM29328.1| UPF0118 membrane protein [Bacillus thuringiensis Bt407]
 gi|228787733|gb|EEM35693.1| UPF0118 membrane protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228790658|gb|EEM38338.1| UPF0118 membrane protein [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228820564|gb|EEM66593.1| UPF0118 membrane protein [Bacillus thuringiensis serovar berliner
           ATCC 10792]
          Length = 337

 Score = 71.0 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 56/341 (16%), Positives = 122/341 (35%), Gaps = 25/341 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +G  R++++ I+ + LY LK     +L   I+ F           K + +   +    
Sbjct: 9   RSRGFQRFLVLIIVALVLYALKSMINLILITFILTFLMDRFQRFISRKLKVNRKIVIACL 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++      L        +++ +L+ +  L  Q+           P      +     
Sbjct: 69  YIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQN-----------PPDNEIVKYVLST 117

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           ++  +  K + +      G+D I +  +  G + L   LS+I  +  L     +   I  
Sbjct: 118 INGMEVSKYIEQ------GVDVIYQSIANIGKVSLQILLSLILSLFFL----LEKERIIT 167

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 +     ++++I+    +  RS         +IA+   ++   A  + G P  + 
Sbjct: 168 FTSKFKDSKLKIFYEEIAYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLLV 227

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L V+  ++ +IP  G  IS   + I     G +     + ++  +   +    L P  + 
Sbjct: 228 LAVMVFLLGLIPVAGVIISLFPLCIIAYNVGGVMYVVYILVFITVIHALESYFLNPKFMS 287

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               LP   TF  L+     +G+ GL IG  +   +  +  
Sbjct: 288 AKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLD 328


>gi|126174889|ref|YP_001051038.1| hypothetical protein Sbal_2681 [Shewanella baltica OS155]
 gi|217972862|ref|YP_002357613.1| hypothetical protein Sbal223_1685 [Shewanella baltica OS223]
 gi|125998094|gb|ABN62169.1| protein of unknown function UPF0118 [Shewanella baltica OS155]
 gi|217497997|gb|ACK46190.1| protein of unknown function UPF0118 [Shewanella baltica OS223]
          Length = 369

 Score = 71.0 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/328 (14%), Positives = 111/328 (33%), Gaps = 23/328 (7%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
            + IIL  +        P + +  +     P        +     +LAVI  +  + L  
Sbjct: 19  FVVIILAGIKAASPIVVPFVLSSFLAVICNPAIGLMTKFRV--PKWLAVILLMGFIVLMG 76

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + L  +    + E  + + +  +                        W  +  H  +++I
Sbjct: 77  LWLASVVGSSVNEFSKQLPQYRVQLVEQFA-----------------WILNKLHSFNIQI 119

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
             +  L            +       +   ++  +I+ + F   +  S+ ++L  L    
Sbjct: 120 SKDQVLAYFDPGMALSMTTNMLSGVGNVMANLFLIILTIVFMLFEAQSLPKKL-HLALDD 178

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                K+I R +  V +   +   ++++  G+++G    + GV   +   VI  +   IP
Sbjct: 179 PDMRLKQIDRFLQSVNQYMVIKT-LVSLATGVIVGVGLTIIGVDYAMLWAVIAFLFNYIP 237

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G+ I+     +   I+     A    L       ++   + P  +G  + L  L  F 
Sbjct: 238 NIGSIIAAIPAVLLAFIQLGPAAAGGTALLYVGANMVMGNMIEPKFMGRGLGLSTLVVFL 297

Query: 315 GLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            L+     +G +G+ +  P+ M +   +
Sbjct: 298 SLIFWGWLLGSVGMLLSVPLTMVVKIAL 325


>gi|328466968|gb|EGF38071.1| hypothetical protein LM1816_13087 [Listeria monocytogenes 1816]
          Length = 347

 Score = 71.0 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/345 (15%), Positives = 119/345 (34%), Gaps = 26/345 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  ++ + LY L+     +L   I  F    + +  + +       +
Sbjct: 5   EKLKENDTARRVLVFVLLGIVLYLLRSMIDLILLTFIFAFLVTRLENVILKRVRVPRKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++ ++  + L++  + FL    + ++ +LV  +V    +  P    +     G      
Sbjct: 65  VIVLSLVAVFLYVAIVHFL-PILINQISQLVDSLVKLYNN--PSDNTIVKWIVGFLKESN 121

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             K+L                 G+DFI    S  G + L + L++I  +    FF  +  
Sbjct: 122 IQKYLQ---------------AGVDFIIASLSGIGSVGLSFFLALILSL----FFSLEKE 162

Query: 183 SISQQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            ++              +K+     +              +IA+    +   A +L   P
Sbjct: 163 RVTSFTGQFMTSKVGFIFKEAAFFGKKFVSTFGVVLEAQLMIALVNTFITTIALYLMDFP 222

Query: 240 SHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             ++L ++  ++ +IP    I     + +     G   +   + +   I   I    L P
Sbjct: 223 QLLSLSIMVFVLGLIPVAGVIISCIPLVLIAYSVGGFQDVVYILITVVIVHAIETYILNP 282

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L+     LP   TF  L+      G+ GL +G  +   +  I +
Sbjct: 283 KLMSSKTNLPVFYTFIILIFSETFFGVWGLIVGIPVFVFLLDILE 327


>gi|168182643|ref|ZP_02617307.1| putative membrane protein [Clostridium botulinum Bf]
 gi|237796003|ref|YP_002863555.1| hypothetical protein CLJ_B2795 [Clostridium botulinum Ba4 str. 657]
 gi|182674151|gb|EDT86112.1| putative membrane protein [Clostridium botulinum Bf]
 gi|229262524|gb|ACQ53557.1| putative membrane protein [Clostridium botulinum Ba4 str. 657]
          Length = 342

 Score = 71.0 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/319 (14%), Positives = 121/319 (37%), Gaps = 13/319 (4%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            ++   +  L + +I +   PI++ F+  K  +  F A++  V+++ +  V ++ +    
Sbjct: 31  IVRDILSLFLISFVIYYILKPIHT-FLKHKGINEKFSALLLVVTLIMIIGVFIISIIPAI 89

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + E   + + V    +       ++  I   +               +    + +  + G
Sbjct: 90  IKEGYNITNSVGYIQK-------YIDYIYNKINLLNNNKILGGILNKVNGKIQNYTVSIG 142

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + + +F   FG   LDY +    + I +++F   G  I Q+   +         K +  
Sbjct: 143 ENILNKFVG-FGENILDYAV----IPIIVYYFLAAGDKIIQKFFMIFPVKIRGVAKNVFE 197

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K++    +   I+ +   ++        G+   + L +I     +IP   P+  +  
Sbjct: 198 DIDKILARYIMSQIILCLIITILTFLVLIGLGIKLPILLSLINGFFNIIPYFGPVIGSLP 257

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +I +    +   A   F+       I    L P + G  + +  L     L+ G +  G 
Sbjct: 258 AILIAFTKSPKTALWAFILLYFIQQIEGDILSPKITGDSVDMHPLTVILLLLIGGKIYGF 317

Query: 326 LGLFIGPVLMALIAVIWKE 344
           +G+ +   +  ++ +I+++
Sbjct: 318 VGMVLAIPIGVIMKIIYED 336


>gi|119488061|ref|ZP_01621505.1| hypothetical protein L8106_11707 [Lyngbya sp. PCC 8106]
 gi|119455350|gb|EAW36489.1| hypothetical protein L8106_11707 [Lyngbya sp. PCC 8106]
          Length = 316

 Score = 71.0 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 77/190 (40%), Gaps = 4/190 (2%)

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
           F        LS+IF+++   +   DG  I      +          + S  V K     F
Sbjct: 118 FVQGAFSNFLSLIFIVVICVYMLIDGIKIWSACLKIVPIEIR---DRFSLTVQKSFIGFF 174

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGN 274
               ++ +   +    A+ + GV   + L +I  ++ +IPG G  +    VS+ + +   
Sbjct: 175 RAQFLLVLFLSISGFIAFKILGVQYALFLSIILGLIDVIPGVGGTLCVIIVSLLVFLSEG 234

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
            + A  + +   I   I D  + P L+   + +  +  FF L  G +  G+LG+F+   +
Sbjct: 235 GWMAIKVLIAATIVQQIQDNLISPKLMKDNLNINPVFLFFALFVGEKIAGILGIFLSIPI 294

Query: 335 MALIAVIWKE 344
             ++ + + E
Sbjct: 295 AGMLIIWFSE 304


>gi|300815320|ref|ZP_07095545.1| conserved hypothetical protein [Escherichia coli MS 107-1]
 gi|300907375|ref|ZP_07125023.1| hypothetical protein HMPREF9536_05315 [Escherichia coli MS 84-1]
 gi|301305987|ref|ZP_07212068.1| hypothetical protein HMPREF9347_04606 [Escherichia coli MS 124-1]
 gi|300400884|gb|EFJ84422.1| hypothetical protein HMPREF9536_05315 [Escherichia coli MS 84-1]
 gi|300532212|gb|EFK53274.1| conserved hypothetical protein [Escherichia coli MS 107-1]
 gi|300838770|gb|EFK66530.1| hypothetical protein HMPREF9347_04606 [Escherichia coli MS 124-1]
 gi|315256072|gb|EFU36040.1| permease, PerM family [Escherichia coli MS 85-1]
          Length = 376

 Score = 71.0 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/321 (14%), Positives = 114/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +       IA   V
Sbjct: 41  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----IAITIV 95

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E +S +   N+                       + +   
Sbjct: 96  VVVMLIALTALVGVLAASFNEFISMLPKFNKELT--------------RKLFKLQEMLPF 141

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++  
Sbjct: 142 LNLHMSPERMLQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKM-R 200

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+  +
Sbjct: 201 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGVIVWLGLELMGVQFALMWAVLAFL 259

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA IS     I +L+   I+    +     +   ++   L P ++G  + +  
Sbjct: 260 LNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGMST 319

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 320 MVVFLSLLIWGWLLGPVGMLL 340


>gi|296112696|ref|YP_003626634.1| hypothetical protein MCR_0469 [Moraxella catarrhalis RH4]
 gi|295920390|gb|ADG60741.1| conserved hypothetical protein [Moraxella catarrhalis RH4]
 gi|326560951|gb|EGE11316.1| hypothetical protein E9G_03819 [Moraxella catarrhalis 7169]
 gi|326563813|gb|EGE14064.1| hypothetical protein E9M_02703 [Moraxella catarrhalis 46P47B1]
 gi|326566826|gb|EGE16965.1| hypothetical protein E9K_00888 [Moraxella catarrhalis 103P14B1]
 gi|326567334|gb|EGE17449.1| hypothetical protein E9Q_05493 [Moraxella catarrhalis BC1]
 gi|326569849|gb|EGE19899.1| hypothetical protein E9U_06036 [Moraxella catarrhalis BC8]
 gi|326571545|gb|EGE21560.1| hypothetical protein E9S_02959 [Moraxella catarrhalis BC7]
 gi|326576739|gb|EGE26646.1| hypothetical protein E9Y_02005 [Moraxella catarrhalis 101P30B1]
 gi|326577585|gb|EGE27462.1| hypothetical protein EA1_02327 [Moraxella catarrhalis O35E]
          Length = 415

 Score = 71.0 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 59/343 (17%), Positives = 127/343 (37%), Gaps = 9/343 (2%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPI--YSSFISKKEESSTF 61
           T      I   + + ++L+S Y+L   +  V +++++      +  Y + I    +    
Sbjct: 3   TQEQKSFIFMTVAVVLMLLSFYYLIHVWLIVFASILMAVWLLSLVEYLTLIPWVGQYLKK 62

Query: 62  LA--VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
           L   ++ T+ +M L  V       +G     +L +  +L  Q    + ++L+       A
Sbjct: 63  LPHGILLTMVLMGLVGVLSTLAALFGHELALQLENLKLLVPQAFEYMNQYLTQYLQTHPA 122

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              W   L   + L+   + FL       +    +  G +       ++  II LF    
Sbjct: 123 VYEWLAGLEWARELRDNPQQFLTRFSDGAMAYLPTYLGGMVSGMGTLVVITIIGLF-LAI 181

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
                 +   ++         + +     + ++   LG  ++    G+  G A WL G+P
Sbjct: 182 SPSVYRRSFVAMVPKDSRDKAEYLLDRSYRSMQQWLLGQLVVMAFVGIATGIALWLMGIP 241

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF--IVDKTLR 297
             +ALG I  ++  +P   P  + +    LL+   +     L++   I +   +    + 
Sbjct: 242 FALALGFIAFLLDFVPVLGP--WLSAIPILLLTLIVSPKMLLWVALMIVVVQQLESYVIS 299

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           P +    + LP +      V      G+LG+ +   LM ++ V
Sbjct: 300 PIVQNRMVDLPPVALLLSQVIMGSITGILGIALATPLMVMVIV 342


>gi|110639081|ref|YP_679290.1| transport protein [Cytophaga hutchinsonii ATCC 33406]
 gi|110281762|gb|ABG59948.1| transport protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 371

 Score = 71.0 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/316 (14%), Positives = 99/316 (31%), Gaps = 16/316 (5%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           K F  PV  A ++     P+               ++I ++ +  + I  + +     + 
Sbjct: 27  KAFLVPVFFAGLLSLLLLPVSKKIQKFIPN--EVCSIILSLVLFLIIICSVSYFISTQVS 84

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            +      +    +      +           +E         ++        L  +G  
Sbjct: 85  NIISDYDMIESKIKTKAHALQ--------ATVNEYTGMDEKEQEAWFDKESEQLLKSGFQ 136

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
                    G       L    MI   F     G  I   + SL +         I   V
Sbjct: 137 KGTTLLVGVGNFVFGLTL---VMIYTFFLQLYRG-KIKLFILSLIDEQQHEKALSILNKV 192

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS--FTAV 265
             ++     G+ I     G++      L G+   + LG++   + +IP           +
Sbjct: 193 QSLVMHYITGLCIALSIIGVMNAVGLTLLGIEHGIFLGLLAGFLNIIPYIGSFVGAGLPM 252

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            + L+ K +++    +        FI +    P +VGG ++L  L T F ++ G    G+
Sbjct: 253 IMALIYKDSLWYPVGVLAIFMFNQFIDNNITTPNVVGGYVRLNSLATIFIVIIGGMIWGV 312

Query: 326 LGLFIGPVLMALIAVI 341
            G+ +   L+ +  + 
Sbjct: 313 AGMVLFIPLLGIFKIF 328


>gi|300769592|ref|ZP_07079478.1| permease [Lactobacillus plantarum subsp. plantarum ATCC 14917]
 gi|300493007|gb|EFK28189.1| permease [Lactobacillus plantarum subsp. plantarum ATCC 14917]
          Length = 358

 Score = 71.0 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/333 (15%), Positives = 114/333 (34%), Gaps = 17/333 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           ++GF   VL   I  +    +      +         ++  V V+ LFI  L +     +
Sbjct: 39  MRGFATVVLLTTIFAYLGIKLSRWLNLRTHLPYWIAVIVVYVGVIALFIGALSYAAPTLV 98

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++K +   +  A          +++ P      + W     H   L    +  L T GI
Sbjct: 99  DQLKVIPDMLAKA----------ITNHPVLNKNIDKWVNQAIHSSELIQNGKALLVT-GI 147

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +    + F  + +   LS IF +            +  +      +++      ++  
Sbjct: 148 KGLSEVGTGFTHVLMAIFLSFIFAVSRGRMMVFGRQFLQSKFKKFFTNVY-----YLTHK 202

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAV 265
              ++        +I     +++   + + G+PS + L +I  I+ ++P  G  IS   +
Sbjct: 203 FVMILGRIIETQLVICTINTILMTIGFMIIGMPSIMVLSIIVFILGLVPVAGVLISMIPL 262

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++     G +     + +   +        L P L+     LP   TF  L+     +G 
Sbjct: 263 TLLGFASGGLIRVVWIIVLVILIHAFESYFLHPRLMADRTDLPVFVTFITLIIMESLLGA 322

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            GL IG  +++    I        +    +I+ 
Sbjct: 323 WGLIIGIPIVSFFLDILGVQNSEPRRVTSQIAK 355


>gi|229109412|ref|ZP_04239007.1| UPF0118 membrane protein [Bacillus cereus Rock1-15]
 gi|228674038|gb|EEL29287.1| UPF0118 membrane protein [Bacillus cereus Rock1-15]
          Length = 337

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 56/341 (16%), Positives = 122/341 (35%), Gaps = 25/341 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +G  R++++ I+ + LY LK     +L   I+ F           K + +   +    
Sbjct: 9   RSRGFQRFLVLIIVALVLYALKSMINLILITFILTFLMDRFQRFISRKLKVNRKIVIACL 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++      L        +++ +L+ +  L  Q+           P      +     
Sbjct: 69  YIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQN-----------PPDNEIVKYALST 117

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           ++  +  K + +      G+D I +  +  G + L   LS+I  +  L     +   I  
Sbjct: 118 INGMEVSKYIEQ------GVDVIYQSIANIGKVSLQILLSLILSLFFL----LEKERIIT 167

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 +     ++++I+    +  RS         +IA+   ++   A  + G P  + 
Sbjct: 168 FTSKFKDSKLKIFYEEIAYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLLV 227

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L V+  ++ +IP  G  IS   + I     G +     + ++  +   +    L P  + 
Sbjct: 228 LAVMIFLLGLIPVAGVIISLFPLCIIAYNVGGVIYVVYILVFITVIHALESYFLNPKFMS 287

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               LP   TF  L+     +G+ GL IG  +   +  +  
Sbjct: 288 AKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLD 328


>gi|269794843|ref|YP_003314298.1| putative permease [Sanguibacter keddieii DSM 10542]
 gi|269097028|gb|ACZ21464.1| predicted permease [Sanguibacter keddieii DSM 10542]
          Length = 415

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/343 (11%), Positives = 104/343 (30%), Gaps = 21/343 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++       +  +L  L G    ++ AL +     P+    +    +     A    +  
Sbjct: 30  VVTVFAAIFVWRALGSLTGLIVNLIIALFLALAMEPMILWLVKHGWKR--GAATATVLFG 87

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH-LSH 129
           +      ++ LF    LE                     ++ +P    +  LW ++    
Sbjct: 88  LLAAAGAVIALFGRMFLEQAG----------------DLITSLPRTYDSVTLWAENQFDV 131

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                   +  L  +  + +   A   G   +    +   +++  ++    G      + 
Sbjct: 132 MIPEMEELQAQLLQDYGNEVASRALAIGSSVIGGLFAFATIMLVAYYLAAAGPRFRASIC 191

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                       ++  I    I        ++A       G    +  +P  + L + T 
Sbjct: 192 GWLRPKNQTEVLRLWEITQIKISDYINSRVVLAAIASFFTGVFLTIIDIPYALPLALFTG 251

Query: 250 IMA-MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           +++  +P  G  I      ++ L  G+   A  +  +  +   + +  L P +    +++
Sbjct: 252 VVSQFVPTIGTYIGGALPIVFALTSGSWQKAVMVLGFIILYQQVENMWLSPKISARALQM 311

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
               +F  ++      G LG F+   + A I  +    +   +
Sbjct: 312 NPAVSFVVVLAFGAVFGALGAFLSLPVAATIQAVATTYLRRHE 354


>gi|212639688|ref|YP_002316208.1| putative permease [Anoxybacillus flavithermus WK1]
 gi|212561168|gb|ACJ34223.1| Predicted permease [Anoxybacillus flavithermus WK1]
          Length = 372

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 50/305 (16%), Positives = 94/305 (30%), Gaps = 10/305 (3%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           Y++     P+L A I      P       +         ++          +   F+   
Sbjct: 44  YWVAPIAVPILFAFITAIFLEPAVKVAQQRIGFKRQSATLLVFSLFTLFMFLSGYFIITK 103

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + E         +     I     L       W  +           L    + FL   
Sbjct: 104 IVTEAFHFFRHSPMYLNEMIAGWNEL----VARWYKQTEKLPPFVVAELSHQVDLFLTKL 159

Query: 145 GIDFIPRFA----SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
                   +    S        + ++ +  +I LF F  D   I + + S          
Sbjct: 160 KTQLTASLSFHKVSALVANVPTFLINFLVYLITLFLFMHDLPKIREAIFSHLTEETKEKV 219

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAP 259
             +   +  V+   +    ++++    V      L      +    I  ++  IP  G+ 
Sbjct: 220 HFMLSRLSYVVFGFWKAQFLVSLIIFAVSLVGLLLITPKVALFTAFIIWVIDFIPIIGSI 279

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           I     +I+  + G+   AT L + G I L I+ +T+ P ++G  I L  L T   +  G
Sbjct: 280 IVMAPWAIFHFVTGDTVLATKLSILGVILL-ILRRTIEPKVMGAHIGLSPLATLISMYLG 338

Query: 320 VRTMG 324
           V+ MG
Sbjct: 339 VKMMG 343


>gi|319407202|emb|CBI80841.1| permease protein [Bartonella sp. 1-1C]
          Length = 385

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/319 (14%), Positives = 110/319 (34%), Gaps = 13/319 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P ++ +++ +   PI   F  K      F  ++ T+ ++ +F+V L+ L      +++
Sbjct: 52  LFPFIAGIVLAYFLNPIVQIFE-KIGIHRVFGTILITLFIIIIFVVSLIILIPIISGQIQ 110

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG--IDF 148
           + +S  +    +       +         S +     S P  L    +  L  +   I  
Sbjct: 111 QFISNGLPIYVNR------IQTFFVEHNFSWVRRYFDSDPNQLHTNIKMLLGQSSDFITS 164

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +     + G   ++     +   +  F+   D   + + +DS          + +   + 
Sbjct: 165 LLNSLLKSGKSIVNIISLFVVTPVVTFYILLDWPHMVEVVDSWIPRSHLTTVRSLFHEMD 224

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           + +     G   + +           + G+   + +G+   +++ IP    +    +SI 
Sbjct: 225 RAVAGFVRGQGTVCLILAGYYAIGLTITGLNFALLIGMFVGLISFIPYIGTMIGFILSIG 284

Query: 269 LLI----KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           +        N      + +   I  FI    L+P LVG  + L  +   F L       G
Sbjct: 285 VAWVQFYPDNWGWIIIVMIVFFIGQFIEGYILQPKLVGSSVGLHPVWLMFALFAFGSLFG 344

Query: 325 LLGLFIGPVLMALIAVIWK 343
             G+ +     A+I V+ +
Sbjct: 345 FTGMLVAVPAAAIIGVLVR 363


>gi|126656529|ref|ZP_01727790.1| hypothetical protein CY0110_22537 [Cyanothece sp. CCY0110]
 gi|126622215|gb|EAZ92922.1| hypothetical protein CY0110_22537 [Cyanothece sp. CCY0110]
          Length = 361

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 61/351 (17%), Positives = 124/351 (35%), Gaps = 20/351 (5%)

Query: 15  MIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +++  I+V ++  + F   F     A  +             K   S  +  ++  +S  
Sbjct: 23  IVVLNIIVFIFVFQQFKSVFYSFTIASFLALLLHHPIIFLEKKLGLSKLYAILLVFLSFT 82

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW---TKHLS 128
            +F V  + L    +++   L+S +          P W+      +     W      L 
Sbjct: 83  LIFSVIGIILVPIIVIKFSALLSIL----------PDWIQSTSIKINNISYWFNSNNSLV 132

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             Q++        +    +FI  F +       +     +  ++ +FF +     +   L
Sbjct: 133 DSQTIITKLTDSFQDQLQNFIQGFPNFIFGTIGNLLSIFLIAVLTIFFLFYGNSFLKNCL 192

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S          + I + + +   S  L   +++    +V+    +L   P  +  G+  
Sbjct: 193 HSW---FSSDVGEMIHKTLYRNFNSYLLNQVVLSTVLTIVMIPTLYLLKAPFALLFGLTI 249

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
               ++P GA +S  AVSI L + GNI+    + L   I   I++  L P L+G    L 
Sbjct: 250 GAFGLVPFGATLSILAVSIILFL-GNIWIGLRVLLVLIIIDQIIENILPPRLLGKLTGLN 308

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            +   F ++ G      +GL     + A    ++     +  +  EKI S 
Sbjct: 309 PIIILFSVMVGATLGDFVGLITAVPIAATTKSLFNHWSQSNTQELEKIFSQ 359


>gi|147920907|ref|YP_685286.1| hypothetical protein RCIX544 [uncultured methanogenic archaeon
           RC-I]
 gi|110620682|emb|CAJ35960.1| conserved hypothetical protein [uncultured methanogenic archaeon
           RC-I]
          Length = 385

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 59/373 (15%), Positives = 138/373 (36%), Gaps = 33/373 (8%)

Query: 12  MRWMIM--FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +W+++   + L+  + ++ FF  V+  + I + S PI +        + T L       
Sbjct: 11  AKWLLIGIALTLLLFWIMRSFFDIVVYGIFIYYISRPIKNRLSRHIR-NETLLVTACLTL 69

Query: 70  VMCLFIVPLLFLFYYGMLEMKELV--SKVVLANQHGI--PVPRWLSDIPGGMWASELWTK 125
           ++   I+ + +    GM ++  +V    ++ A   GI   V    S +   + A  L   
Sbjct: 70  LILPLILVVAYTLLIGMSQLLAVVDDQGLMSAIPAGILANVTASFSSMHSNLSAGRLTEV 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L++    ++       +  +  + +     G  F+D  L +  + +  ++  +D   + 
Sbjct: 130 DLANLTPEQMYQALSGYSGWLPEVEQIIIAAGTTFVDILLRLFLVFVVAYYLLKDDNRLK 189

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKV---IRSTFLGMTIIAIGEGLVLGSAYWLAG----- 237
           +   +    L   +     R    V   +++ F G  +  +   +V    + L       
Sbjct: 190 EWFCNTFPRLIEEHNGVFIRYCKAVDADLQAIFFGNLLSIVIFSVVAAVVFQLLSVFAPV 249

Query: 238 ----VPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNA----------TCLF 282
               +PS + LG++    A++P  G  +    +  YL I G++               + 
Sbjct: 250 PSLQIPSPILLGILCGASALLPVIGMWLVVAPLLAYLAI-GSLMAGTLMPNLAYFLVIVI 308

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                   + +  +RP++  G  KL      F    G    G+ GLF+G +++ L+   +
Sbjct: 309 SILLFVQTLPELLIRPYVGHG--KLHIGLLMFAYTLGPIVFGISGLFLGAIVLVLVTHYF 366

Query: 343 KESIMAIKENKEK 355
           +  +  +     +
Sbjct: 367 RVVVPEMARGGHE 379


>gi|309389223|gb|ADO77103.1| sporulation integral membrane protein YtvI [Halanaerobium
           praevalens DSM 2228]
          Length = 353

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 60/333 (18%), Positives = 119/333 (35%), Gaps = 20/333 (6%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG---- 85
           +F P + A +I     P+   F  K      F+ +I  + V+ + +  ++     G    
Sbjct: 30  YFTPFIIAAVIASLINPVVDYFNKKIPIHRGFIVIIVLILVVVILVTMIIIGGAQGYLEL 89

Query: 86  ------MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
                 + + + + S++   +     +   + +        +    +L    +    +  
Sbjct: 90  NRLLRNLPDYRSIDSQIKWLSVQNQQLETLIQNWEVSDAVRDAINSNLQLLYNGIRDTLI 149

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            +  + ++F+ +  S F        + +    I  FF  RD   I + L ++        
Sbjct: 150 SVINSILEFLTKLPSVF--------MILFIAFIGTFFISRDRDKIKEFLVNIFPLAIQPK 201

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGA 258
              +   +          M I+    G+V G    L G    + +GV  A++ +IP  G 
Sbjct: 202 IANVFTQLNSSAVGYIRAMLILITISGIVAGIGVKLLGNQYALIVGVTAAVLDLIPIIGP 261

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            + F    I  +I GN   A  LF+        +       ++G  + L  L T   L  
Sbjct: 262 ALLFYPWIIVSIIFGNFSQAFSLFILHLFLAG-IRSASEGKIMGKSLGLHPLATMIALFS 320

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           G R +G +G  +GP  + LI  I    ++ IK 
Sbjct: 321 GYRILGAIGFVVGPTFLVLIKAIVDSDLIDIKN 353


>gi|119469341|ref|ZP_01612280.1| hypothetical protein ATW7_07809 [Alteromonadales bacterium TW-7]
 gi|119447205|gb|EAW28474.1| hypothetical protein ATW7_07809 [Alteromonadales bacterium TW-7]
          Length = 347

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/324 (14%), Positives = 111/324 (34%), Gaps = 22/324 (6%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + ++ +  + ++L  +        P + A  I     P+   F   K         IA 
Sbjct: 11  NKSLIVFAALVVVLAGIKSASVIVIPFILAAFIAIICNPLIKFFARYKIPK-----GIAV 65

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + V+ + +   + L       + +   ++          P + + +        +W   L
Sbjct: 66  MLVVLIIVGLGVSLGGLVGQSINDFSQQL----------PEYKAQL----KEEFIWLVDL 111

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +   ++ I  E  +       +   A+           ++  +I+ + F   +G  +S +
Sbjct: 112 ASQYNILINKEQLISMFDPGKMVDVATNMLTGLGGVMANMFLIILTVIFMLFEGPLLSNK 171

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +    E   P    K      + I S     T++++  G+++    W+  V   +  GV+
Sbjct: 172 IHMALED--PDSKMKQIDRFLESINSYLAIKTLVSLATGIIVSVYLWVLNVDYFILWGVL 229

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             +   IP  G+ I+     +  LI      A  +         ++   + P  +G  + 
Sbjct: 230 AFMFNYIPNIGSIIAAVPAVLLALITQGPLIAGMVAAGYLTINTVMGNIVEPKFLGKGLG 289

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFI 330
           L  L  F  L+     +G +G+ +
Sbjct: 290 LSTLVVFLSLIFWGWLLGTVGMLL 313


>gi|194017243|ref|ZP_03055855.1| sporulation integral membrane protein YtvI [Bacillus pumilus ATCC
           7061]
 gi|194011111|gb|EDW20681.1| sporulation integral membrane protein YtvI [Bacillus pumilus ATCC
           7061]
          Length = 372

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 59/344 (17%), Positives = 116/344 (33%), Gaps = 12/344 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +M   I    +V LY    F  P   ALI+     P              F+ VI  +
Sbjct: 11  RSLMMISIAVFAVVFLYQSFPFLYPFWIALIVSCLIHPAVCKIEEITGMPRGFVVVIVLL 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD---IPGGMWASELWTK 125
             + +    +  L    +     L   +       I +         +P     +  +  
Sbjct: 71  LFLVVAASFITLLVAEIISGSAYLAKVLPGHLDRMIGIVEQFFTDKILPLYHDVTAQFNT 130

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASR-------FGMIFLDYCLSIIFMIIALFFFY 178
             +  +   +     L       I  F S+       F  +  D   +++F  +A FF  
Sbjct: 131 LQAGQKESILGQIQALGDEAAAKIGTFLSKTLELIPAFLGLLPDAAATLLFSALATFFIT 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D F++ +    +    +  + + I   + K I        ++      ++     +  V
Sbjct: 191 KDWFTLKKYGSRIFPAKWMQHTRAILSEIKKAITGFMKAQLLLVAMTIGLVIIGLIILKV 250

Query: 239 PSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
              + + +    + ++P  G+   F    IY  + GN+  A  L +   I + I  +   
Sbjct: 251 EHALVIALCIGFVDLLPYIGSGTVFLPWIIYSAMTGNLSLAIGLGILY-IVVLIQRQISE 309

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           P ++   I L  L T   L  G++ +G LGL IGP  + +    
Sbjct: 310 PKVLSKSIGLNPLATLVALFVGLKWLGFLGLVIGPASLVVWQAF 353


>gi|114326966|ref|YP_744123.1| hypothetical protein GbCGDNIH1_0302 [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315140|gb|ABI61200.1| hypothetical membrane spanning protein [Granulibacter bethesdensis
           CGDNIH1]
          Length = 397

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 72/223 (32%), Gaps = 1/223 (0%)

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           L + Q +   +  +L + G   I   A+      L    S+  ++I   +         +
Sbjct: 156 LDYAQQVVHKARAYLSSAGEK-IAGLAAGAATSTLGGIGSLTVILIVAIYLAASPGIYVR 214

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
                    +     ++       ++  F+G  +  +  G++      L GV     L +
Sbjct: 215 GTLRCLPKSWRPRGAEVMHETAHALQWWFVGQVVDMVMIGVLTWIGLSLLGVKLAGTLAL 274

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           I A+   +P    I+    ++ +        A  + +  A    +    + P +    + 
Sbjct: 275 IAALCNFVPYVGAIAGAVPAVLVAFGEGPQTALYVGVMFAGVQALEGNVIAPIVQKSTVD 334

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           LP + T           G +GL +   + A+  V  +   +  
Sbjct: 335 LPPVLTILSQTVLGTIFGPVGLILATPIFAVGMVAVRMIYVES 377


>gi|313902386|ref|ZP_07835789.1| protein of unknown function UPF0118 [Thermaerobacter subterraneus
           DSM 13965]
 gi|313467317|gb|EFR62828.1| protein of unknown function UPF0118 [Thermaerobacter subterraneus
           DSM 13965]
          Length = 422

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/314 (15%), Positives = 109/314 (34%), Gaps = 13/314 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           + P + AL++ +   P      ++         ++  + +     V L++L    + E+ 
Sbjct: 30  WPPFVLALVLTYLLAPAVDFLEAQ-GLRRATAILLLYLLITLAAAVALVYLLPGFLDEL- 87

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
                    N+ G  +P +   +   +          + P +++      +         
Sbjct: 88  ---------NRLGTQLPGYARRLRLLVEGVRQDAARATLPATVRQALLQQIDRTEGWVTA 138

Query: 151 RFASRFGMIF--LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           R A   G +   L     ++   +  F+   D   + +             W ++ R V 
Sbjct: 139 RLADLTGGLVEGLLGAAPLLLAPVLAFYLLDDLPRLRRWAQDRLGRGHRRRWLELVRAVD 198

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           +V+     G  ++A   GL++ +     G+   V LG + A+  +IP   PI      + 
Sbjct: 199 QVVGGFIRGQLLVAGFVGLMVTAVATFFGLRFAVLLGALAALADLIPYFGPIIGAVPVLA 258

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           +    +   A  + +   +  ++ +  L P ++G  + +  L     L+ G    GL GL
Sbjct: 259 MAALHSPATAIKVAVALVLVQWVENSVLSPRILGQRVGVHPLVVISALLVGGHHFGLAGL 318

Query: 329 FIGPVLMALIAVIW 342
                +  L  V+ 
Sbjct: 319 LFAVPVAGLAHVLL 332


>gi|319954603|ref|YP_004165870.1| hypothetical protein Celal_3098 [Cellulophaga algicola DSM 14237]
 gi|319423263|gb|ADV50372.1| protein of unknown function UPF0118 [Cellulophaga algicola DSM
           14237]
          Length = 366

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 56/343 (16%), Positives = 124/343 (36%), Gaps = 14/343 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + + L  LY ++   A +  A +I     PI      + +  +T   ++  V ++ L   
Sbjct: 20  ILLTLFFLYKIQSVIAYLCIAAVIALIGRPIVIFIRKRLKAPNTVAVILTMVLMVGLLSG 79

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +         + K L   ++  NQ    +    + +     +S    + ++       L
Sbjct: 80  IIALFIPLLTEQGKNL--SLLDINQLQENINDLYNQVTQYFSSSP---EKVTKMLEESHL 134

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +   +   + FIP F + F  +     + +  ++   FFF +D   +   L     +  
Sbjct: 135 EKNIFEGLDVGFIPNFLNTFLDVLSTASIGLFSVLFISFFFLKDSNLLQNGLLMFMPNEK 194

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               K     +  ++   F+G+ I      ++      L G+ + + +  + A+  +IP 
Sbjct: 195 EGKMKNSILKINDLLSRYFVGLLIQLFILFVIYTITLLLVGIENAIVIAFLCALFNIIPY 254

Query: 257 GAPISFTAVSIYLLIKGN--------IFNATCLFLWGAIELFIVDKTL-RPFLVGGPIKL 307
             PI    + I L +  N        I       + G +   ++D    +PF+    +K 
Sbjct: 255 IGPIIGGVLMIVLTMTTNLDADFSTIILPKAGYVVIGLLIGQLIDNFFSQPFIFSNSVKS 314

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             L  F  ++      G++G+ +      ++ VI KE +   K
Sbjct: 315 HPLEIFLIIIIAGLLFGIVGMIVAVPGYTVLKVILKEFLSENK 357


>gi|144899178|emb|CAM76042.1| protein containing domain of unknown function DUF20
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 353

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/307 (14%), Positives = 97/307 (31%), Gaps = 14/307 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + + LV LY L+G   P ++ + + F   P+               A ++  +       
Sbjct: 14  LAVTLVLLYLLRGVMLPFVAGMALAFFLDPLADRLEK---------AGLSRTTATATITG 64

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
               L     + +  ++ + V+A    IP     L+D    +               L+ 
Sbjct: 65  IFFLLVVTLAVLLLPIIQEQVVAFAERIPSYVETLNDRLHPLIVELKRKLSKGDMDKLRT 124

Query: 136 LSETFLKTNGIDFIP--RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                        +   +     G+  ++    +    I  F+  RD   +  ++DS   
Sbjct: 125 SVGEHAGEAVTWALGVVKQVLTGGLAIINVLSLLFITPIVTFYMLRDWDLMVAKVDSWLP 184

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  ++    + + +     G   + +  G   G    L G+   + +G+ + +++ 
Sbjct: 185 REHADTIREQVAEINRTLAGFIRGQASVCLALGAFYGVGLSLVGLDLGLVIGLGSGLISF 244

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--DKTLRPFLVGGPIKLPFLP 311
           +P    I+     I L +           + G      +     L P LVG  + L  + 
Sbjct: 245 VPYLGTIAGFITGIGLALAQTQSWELPAMVAGIFVAGQMLEGNVLTPKLVGDKVGLHPVW 304

Query: 312 TFFGLVG 318
             F L+ 
Sbjct: 305 IMFALLA 311


>gi|114320847|ref|YP_742530.1| hypothetical protein Mlg_1694 [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227241|gb|ABI57040.1| protein of unknown function UPF0118 [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 360

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/315 (12%), Positives = 92/315 (29%), Gaps = 21/315 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + ++L  L    G   P+L A  +     P  +    +    S               + 
Sbjct: 34  LVVLLAGLKAAAGVVTPLLLAAFLAIICAPPLTWMRRRGVPGS---------------VA 78

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L      G+      ++            P + + + G    +  W      P  L   
Sbjct: 79  VLALFVAVGLAFFLLFLALQGAVESMAHQAPHYQARLFGLFDETMAWLAGRGVPAELLPD 138

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                    +  +   A         +  +   +++A  F   +   +  +L +      
Sbjct: 139 RPPL---PALADLTGLARAVAGGVGQFTATTFLVLLAFMFLLLEETHLPGKLRAAFPR-- 193

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
                  +R   + +       +  ++  GL++G    L GV   V  G++  ++  IP 
Sbjct: 194 SRRGGVRARRFLRSVYRYLFIKSATSLATGLLVGVGLALIGVDFPVLWGILAGLLNFIPT 253

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ ++     +   +   +               ++   L P  +G  + L  L     
Sbjct: 254 VGSILAAIPAVLIAFLGLGVMEGLLALALYVAVNVVIGSVLEPRFMGHTLGLSPLVVLVS 313

Query: 316 LVGGVRTMGLLGLFI 330
           L+     +G +G+ +
Sbjct: 314 LMAWGWVLGPVGMLL 328


>gi|149037154|gb|EDL91685.1| similar to chromosome 9 open reading frame 5 (predicted) [Rattus
           norvegicus]
          Length = 789

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 9/190 (4%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDG---FSISQQLDSLGEHLFPAYWKKIS-RIVPKVIR 212
           G   L++ LS+I  +  LF+        +   + + SL     P     I  + V + IR
Sbjct: 559 GTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIR 618

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI 271
             F     +A   GL     + + G+        + AI+  +P  G   +     + L +
Sbjct: 619 GVFDASLKMAGFYGLYTWLTHTVFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWL 678

Query: 272 KGNIF-NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +   A  L ++  +  + VD  +   + GG        T   + GG   +GL G  I
Sbjct: 679 TQGLGCKAVLLLVFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAII 735

Query: 331 GPVLMALIAV 340
           GP+L+ ++ V
Sbjct: 736 GPILLCILVV 745


>gi|171779728|ref|ZP_02920684.1| hypothetical protein STRINF_01565 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281830|gb|EDT47264.1| hypothetical protein STRINF_01565 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 317

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 50/268 (18%), Positives = 93/268 (34%), Gaps = 6/268 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    L FL     P++ + I+ +   P+    I ++  + T    I    ++ L I
Sbjct: 43  ISFLFKPVLSFLAIIMLPLVISAILYYLIKPL-VGLIERRGVNRTASIFIVYAIIVALLI 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +         ++   V  +    +        L   P            L++     +
Sbjct: 102 WAVASFIPMIEGQLTSFVENLPAYVKSVNVESSKLLKSPWLANYQSELQDMLANISDKAV 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   N ID+   FAS    +     L+II     LF+F RD   + + L       
Sbjct: 162 DYAESFSKNAIDWASSFASAIARVT----LAIIMSPFILFYFLRDSHKMKEGLIKALPTR 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +I   + K +     G   +AI  G++    + + G+      G+I   + MIP
Sbjct: 218 MRRPTSRILGDINKQLAGYVQGQVTVAIVVGIMFTIFFNMIGLRYAATFGIIAGFLNMIP 277

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLF 282
             G+ ++   V I  +++G I     L 
Sbjct: 278 YLGSFLAMVPVVIMGIVQGPIMLIKILV 305


>gi|160882038|ref|YP_001561006.1| hypothetical protein Cphy_3920 [Clostridium phytofermentans ISDg]
 gi|160430704|gb|ABX44267.1| protein of unknown function UPF0118 [Clostridium phytofermentans
           ISDg]
          Length = 434

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 71/193 (36%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           I   +       ++  LSI   I  L+       + ++ + +         +  ++R   
Sbjct: 225 ILNVSISIAKTAINILLSIAISIYMLYDKRMLSKNAARIIYAFIPKKKADSFLDVTRECG 284

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
            +     +G TI +   G++      +  +P  + + VI  +  MIP   P       I 
Sbjct: 285 SIFTGFIVGKTIDSTIIGILCFILMSILRLPYAILISVIVGVTNMIPYFGPFIGAVPGIL 344

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L +  +   A    +            L P ++G    L  L   FG+  G    G++G+
Sbjct: 345 LFLFISPIQALVFAIMILGLQQFDGWILGPKILGDSTGLTPLWVIFGITVGGAYGGVIGM 404

Query: 329 FIGPVLMALIAVI 341
           F+G   +A+IA +
Sbjct: 405 FLGVPFVAVIAYL 417


>gi|300926828|ref|ZP_07142596.1| hypothetical protein HMPREF9548_04828 [Escherichia coli MS 182-1]
 gi|301329802|ref|ZP_07222534.1| conserved hypothetical protein [Escherichia coli MS 78-1]
 gi|309794754|ref|ZP_07689176.1| conserved hypothetical protein [Escherichia coli MS 145-7]
 gi|300417178|gb|EFK00489.1| hypothetical protein HMPREF9548_04828 [Escherichia coli MS 182-1]
 gi|300844100|gb|EFK71860.1| conserved hypothetical protein [Escherichia coli MS 78-1]
 gi|308121804|gb|EFO59066.1| conserved hypothetical protein [Escherichia coli MS 145-7]
 gi|324018612|gb|EGB87831.1| hypothetical protein HMPREF9542_02706 [Escherichia coli MS 117-3]
 gi|332104381|gb|EGJ07727.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 376

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 114/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +       +A   V
Sbjct: 41  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITIV 95

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E +S +   N+                       + +   
Sbjct: 96  VVVMLIALTALVGVLAASFNEFISMLPKFNKELT--------------RKLFKLQEMLPF 141

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++  
Sbjct: 142 LNLHMSPERMLQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKM-R 200

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+  +
Sbjct: 201 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGVIVWLGLELMGVQFALMWAVLAFL 259

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA IS     I +L+   I+    +     +   ++   L P ++G  + +  
Sbjct: 260 LNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGMST 319

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 320 MVVFLSLLIWGWLLGPVGMLL 340


>gi|300087711|ref|YP_003758233.1| hypothetical protein Dehly_0601 [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527444|gb|ADJ25912.1| protein of unknown function UPF0118 [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 361

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/338 (13%), Positives = 108/338 (31%), Gaps = 12/338 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPI------YSSFISKKEESSTFLAVIAT 67
            +++  + V +Y L+    P    L+  +   P+      Y +     E     + VI  
Sbjct: 4   LVVLIALSVLIYSLRSVLLPFFIGLLAAYILHPLILLMERYITLPKPFERHKRLIFVIVV 63

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + V+   IV      Y        +      A+Q    V  + + +   +  ++      
Sbjct: 64  MLVLLALIV--AVASYMMATLFNTISELSDNASQIFTSVSAYFTGLLESIR-TQFPPDVQ 120

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +   S    +   +      F+ R  +      + +      + + LF+  +D   +   
Sbjct: 121 ASIDSFVAEALAEIGNAAQGFLSRSVTVI-PTTVGFIFGFAALPMFLFYMLKDWERLRDS 179

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS--HVALG 245
           L      L   + + I  I+  V+        ++    G +      +  V     + L 
Sbjct: 180 LQRGLPGLAAVHTRNILNIIGNVLGRYIRAQLLLGSIVGSLTFIGLLIMNVNFGLALLLA 239

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            +  +  M+P   P      +  +++         + L   +   + +  L P + G  +
Sbjct: 240 TVAGLFEMVPTIGPWISGIFAAVIILATYPDLVIWVILLFLLIQGLENNLLVPRVQGQML 299

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            +        LV G    G+ G+ +   L A I  I++
Sbjct: 300 HIHPAIALLLLVLGAYLAGIWGILLAVPLAATIVKIFQ 337


>gi|167761301|ref|ZP_02433428.1| hypothetical protein CLOSCI_03706 [Clostridium scindens ATCC 35704]
 gi|167660967|gb|EDS05097.1| hypothetical protein CLOSCI_03706 [Clostridium scindens ATCC 35704]
          Length = 380

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/340 (13%), Positives = 119/340 (35%), Gaps = 9/340 (2%)

Query: 11  IMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +     +   ++ +Y    L GFF P +    I + + PI +    + +      + +  
Sbjct: 20  VSLTFSLIATILFIYVGFRLLGFFMPFVIGWFISYIASPIVNWLEKRVKIVKKLGSALII 79

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA---SELWT 124
           ++V+    + + F+      E+  L+  +    Q        +     G++    + L  
Sbjct: 80  IAVLGAVGILIYFIGSKLWKEIASLIQNMPKMYQDLESGFGEIGSSLNGVFKVLPASLQD 139

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
              +   +L      ++       +   A           ++ I   I+ +FF  +   +
Sbjct: 140 AWHTMTSNLDKTMGDWMGRISEPTVAA-AGNVAKRIPSVLIATIVTFISAYFFIAERDEV 198

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +    +           +   +   +   F     I     L+L   + +  V  +  L
Sbjct: 199 IEWAKKVSPEPIVRRMSMVIDNLKFAVGGYFKAQFKIMGVVCLILVIGFVILKVHFYFLL 258

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            ++ A +  +P  G   +    ++Y L+  +   +  L +   +   +V + ++P LVG 
Sbjct: 259 ALLIAFLDFLPFFGTGTALIPWALYKLLVKDYRMSVGLIILYGVTQ-LVRQLIQPKLVGD 317

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            + +  LPT   L  G +  G+ G+     +  ++  ++K
Sbjct: 318 SMGMQPLPTLLFLYIGYKAGGIFGMIFAVPIGMIVINLYK 357


>gi|300936465|ref|ZP_07151385.1| conserved hypothetical protein [Escherichia coli MS 21-1]
 gi|300458387|gb|EFK21880.1| conserved hypothetical protein [Escherichia coli MS 21-1]
          Length = 376

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/321 (13%), Positives = 114/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +       +A   V
Sbjct: 41  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITIV 95

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E +S +   N+                       + +   
Sbjct: 96  VVVMLIALTALVGVLAASFNEFISMLPKFNKELT--------------RKLFKLQEMLPF 141

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++  
Sbjct: 142 LNLHMSPERILQRMDSEKMVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMR- 200

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+  +
Sbjct: 201 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGVIVWLGLALMGVQFALMWAVLAFL 259

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA IS     I +L+   ++    +     +   ++   L P ++G  + +  
Sbjct: 260 LNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMST 319

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 320 MVVFLSLLIWGWLLGPVGMLL 340


>gi|294669221|ref|ZP_06734301.1| acetyltransferase, GNAT family [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308853|gb|EFE50096.1| acetyltransferase, GNAT family [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 377

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 55/334 (16%), Positives = 123/334 (36%), Gaps = 14/334 (4%)

Query: 17  MFIILVSLYFL--KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +F I+ S   L  +    P + A ++ +   P+      K    +    ++   +     
Sbjct: 38  VFFIVASWLVLALRDILTPFIVAAVLAYILNPLVEKLRDKGVSRAPASMLVMMFA----- 92

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
              LL L    ++ +  L+++          +  ++ +     + S        + ++L 
Sbjct: 93  ---LLILLALLLILIPMLLTQFQNLTNRLPQLIDFVQNKALPWFNSHFGAHIPLNKETLL 149

Query: 135 ILSETFLKT--NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
              ++   T  N    I       G        ++  + + L++F  D    S  + +L 
Sbjct: 150 NWLQSHTGTLQNTASKIAPTLMEQGGALASGLSNLALLPLLLYYFLYDWQRWSHGIRALM 209

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
              F   + +I   + +V+     G  ++ +  G+V G    L G+ S  A+G+I  ++ 
Sbjct: 210 PRRFIDAYTRIGGEIDEVLGEFLRGQLMVMLIMGVVYGVGLMLTGLDSGFAIGMIAGLLV 269

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF--IVDKTLRPFLVGGPIKLPFL 310
            IP     +   ++    +         +++W    +   +    + P +VG  I L   
Sbjct: 270 FIPYLGAFTGLLLATIAALLQFGSWQGLIWVWLVFVVGQLLESFLVTPKIVGDRIGLSPF 329

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              F L+   + MG +G+ IG  L A+  V+ +E
Sbjct: 330 WVIFSLMAFGQLMGFVGMLIGLPLAAICLVLLRE 363


>gi|284051289|ref|ZP_06381499.1| hypothetical protein AplaP_07427 [Arthrospira platensis str.
           Paraca]
          Length = 382

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 52/327 (15%), Positives = 116/327 (35%), Gaps = 11/327 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
              ++ ++++  +  P+ +   S K        ++  ++++       L +    + ++ 
Sbjct: 40  IILIMISVVLAASIIPLVNWVQSLKMPR-WLAVIVVYLTLIGGITGLGLIIGPSVVDQIN 98

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            LV ++ +  +  + +   ++   G    +      L            ++  +    I 
Sbjct: 99  LLVRQLPIFAERSLDLVSNIASSLGEDIPA------LIDRLVDTQSLTNWVIRSSQQLIL 152

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
           R         +    S+I  +    +   D  ++ +    L  + +       +  V + 
Sbjct: 153 RSYG-ITRGIVGGVFSLILSLFVSGYMVADSKTLVKSFVQLFPYPWNDRLAAQAVPVGRR 211

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGV-PSHVALGVITAIMAMIPGGAPIS-FTAVSIY 268
           I S   G  I++   G+ + +     G+    + LG I     +IP   PI       + 
Sbjct: 212 IGSYIRGRLIVSAILGVSITTCLGFLGLKDYALGLGAIAGFTNLIPFLGPILGAIPALVV 271

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
            L KG       L L+  I   +    L P LVG  + +  L     ++ GV+ +GL+G 
Sbjct: 272 ALAKGGFLFFWVLLLY-VIVQNLETYVLDPLLVGSSVGVHPLYQLLSVLAGVQLLGLIGA 330

Query: 329 FIGPVLMALIAVIWKESIMAIKENKEK 355
            I P   A IA + +   +  K   E+
Sbjct: 331 LIVPPWCAGIAALVENLYLEPKRLAEQ 357


>gi|199597441|ref|ZP_03210871.1| Predicted permease [Lactobacillus rhamnosus HN001]
 gi|199591701|gb|EDY99777.1| Predicted permease [Lactobacillus rhamnosus HN001]
          Length = 358

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 59/344 (17%), Positives = 122/344 (35%), Gaps = 23/344 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E  +N   + R +++F + + L+F +   + +L   I       +  +            
Sbjct: 5   EKFINNVPVRRTVVLFSVFLVLWFARSIMSDILLTFIFALLVSRLVHAVQRHVHVRP--- 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                V V+ ++I+ +L L Y  +  +  ++ + +        V  + +           
Sbjct: 62  ----FVIVVPVYILVILGLIYAAVHYVPAIIHQTITLFNS---VQDFYNSDAFANNQVMQ 114

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           W    +   +L    +T     G+  +  +A   G + L   LS I      FFF  +  
Sbjct: 115 WVLQSTKSLNLTEQLKT-----GLSTVLEYAGNIGAMGLTLVLSFILS----FFFTIELD 165

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVP 239
           S+        +  F  Y+K +     K I +          IA+   ++         +P
Sbjct: 166 SLPAFGQLFLDSPFGWYFKDLRYFALKFINTFGVVMEAQIFIAVVNTVITTITLLFMKMP 225

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           +  +L ++  ++++IP  GA IS   ++I     G   +   + +  A    +    L P
Sbjct: 226 NIPSLAIMVFLLSLIPVAGAIISLIPLTIIGYTVGGWQDVITILIMIAAIHVLEAYVLNP 285

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
             +    +LP   TF  L+   R  G  GL +G  +      + 
Sbjct: 286 KFMSSRTQLPVFFTFVVLLVAERLFGTWGLIVGIPIFTFFLDVL 329


>gi|309789729|ref|ZP_07684309.1| hypothetical protein OSCT_0260 [Oscillochloris trichoides DG6]
 gi|308228215|gb|EFO81863.1| hypothetical protein OSCT_0260 [Oscillochloris trichoides DG6]
          Length = 379

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/357 (13%), Positives = 120/357 (33%), Gaps = 17/357 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +I+ + ++ +  ++    P + A+I  +   P+ +    +         V+  V
Sbjct: 13  KLITAGIIVALTILFIQHIEHVLPPFIGAIITAYLFNPLVTWLQRRTNTRRAIWIVVLYV 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               L      +++   + +  +L      A Q    +  + +D        EL      
Sbjct: 73  FAFLLLYGLFTWIWPIIVQQTGDL---ARSAPQFANDIADFFAD------HQELDLGGFV 123

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                       L  +   ++           L+  + I+  +I  F+   +   + +  
Sbjct: 124 IDLGPLEEQLISLVRDLGAWLSGNVPGLVFSALETVIYILVYLIITFYLLLEAGHLKRWA 183

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +L    +      +   +  V  +   G  I+ +   ++L     +  VP  + + V +
Sbjct: 184 TNLIPPPYREEIGSLGTQIDAVFSAYIRGQLILIVIMSVLLYIPLSILKVPYALVIAVAS 243

Query: 249 AIMAMIPGGAPISFTAVSIYL--------LIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
             + ++P   P S   ++I              ++  A  + +       I D  + P +
Sbjct: 244 GTLEILPIIGPWSAAGIAIIATLFQTHIPFGLSHLGLAALVGIIYFTLRQIEDHFIIPNV 303

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           +G  ++L      F ++ G    G  GLF+   + A+I +I       + +  E + 
Sbjct: 304 MGPLVRLHPAVVIFAILAGGALAGAFGLFMSIPVAAIIRIILSYLYRKLTDQPEPLQ 360


>gi|254785195|ref|YP_003072623.1| permease [Teredinibacter turnerae T7901]
 gi|237687517|gb|ACR14781.1| putative permease [Teredinibacter turnerae T7901]
          Length = 367

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/300 (15%), Positives = 102/300 (34%), Gaps = 11/300 (3%)

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
                +  + + C   + L+F+      ++  L+++       G  +   L +    +  
Sbjct: 67  NLSVTLTFLVLTCSIFLSLVFVVPALWRQLINLLNETPRMLVEGQNLLLLLPEKYPALVT 126

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                + ++  +           T     I  F+     + +   + ++ + I +FFF +
Sbjct: 127 ELQVKELIATLRIEM--------TQWGQSILSFSLTQLPVLVAALIYLVLVPILVFFFLK 178

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  +   L ++     P   K    +  + I +   G  I  +  G +    + L  + 
Sbjct: 179 DGEQMINWLSNMLPTRRPVMRKIWMEMNLQ-IANYVRGKVIEIVIVGGISSITFSLLDLN 237

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLR 297
             + LG+   +  +IP  GA +    V++    +    N     +     +  +D   L 
Sbjct: 238 YALLLGISVGLSVLIPYIGAAMVTLPVAVIGFFQWGWSNDFFYIMLAYGVIQALDGNVLV 297

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           P L    +K+  +     ++      G  G+F    L  L   I      A+ E +  I+
Sbjct: 298 PLLFSEAVKMHPVAIVLAVLVFGGLWGFWGVFFAIPLATLCKAIMNAWPTAMLEERPAIA 357


>gi|22138063|gb|AAM93408.1| cpsX [Streptococcus thermophilus]
          Length = 378

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 106/292 (36%), Gaps = 4/292 (1%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELW 123
           ++ +       +   ++ +  + ++ + ++ ++  ++  I  +  WL          +  
Sbjct: 79  VSLLLAFATIGLIFTWVVFTVLPDLIDSINTLISQDRSAINNLINWLLKNKSLQKIIQDL 138

Query: 124 TKHLSHPQSLKILSETFLKT--NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                  + +   S   L+   NG+       +      ++  +SI+F    L    + G
Sbjct: 139 GGVTQVRELINSYSAQLLQQIMNGLTNFLTSLTSLPSTLINLFISIVFSCYVLVGKEKLG 198

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +++ +D          +  +  I+     + F+  +I A   G +      +   P  
Sbjct: 199 SQVNRLVDVYLGRY-GKTFHYVVAILNNRFHNFFVYQSIEACILGTLCYIGMRIFNFPYA 257

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             + ++    AMIP         +   L++  ++  A     +  I        + P++V
Sbjct: 258 ATISILIGFSAMIPVLGAYIGVTIGTILIMTHSVILALLFVAYVVILQQFEGNLIYPYVV 317

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           GG   LP +     +  G    G+LG+ +   + A +  I K++++  ++ K
Sbjct: 318 GGSTGLPVVWVILAITIGSALGGILGMLVSVPVAATLYQIVKDNVVTREKAK 369


>gi|292491904|ref|YP_003527343.1| hypothetical protein Nhal_1835 [Nitrosococcus halophilus Nc4]
 gi|292491920|ref|YP_003527359.1| hypothetical protein Nhal_1854 [Nitrosococcus halophilus Nc4]
 gi|291580499|gb|ADE14956.1| protein of unknown function UPF0118 [Nitrosococcus halophilus Nc4]
 gi|291580515|gb|ADE14972.1| protein of unknown function UPF0118 [Nitrosococcus halophilus Nc4]
          Length = 352

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/332 (14%), Positives = 108/332 (32%), Gaps = 18/332 (5%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + + L+ L++       V + +++      +      +   S  +      + +M LF V
Sbjct: 28  VAVTLLFLWYAIPVLLLVFAGILLAILLHGLSDWIARRTFLSYGWSLTFVVLDLMTLFAV 87

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L  +      +   L  +                 +P  +   E +    +  Q L  L
Sbjct: 88  GLSLVAPDVADQAYHLSQQ-----------------LPEALKRLEQYFAQYTWGQELLAL 130

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +  L  +  +F+   AS      L+   S I ++    +         + +  L     
Sbjct: 131 IDKDLMPS-REFMLTQASNIFSSTLNVLTSFIIILFIGLYGAAQPRLYVEGITQLVPIRR 189

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               + +   V + +     G  I     G++     WL G+P  + LG++  ++  IP 
Sbjct: 190 RQRVRTVLHQVGQTLLWWLFGRMISMTIVGMLTVPGLWLLGIPHILTLGLLAGLLTFIPY 249

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             P+     +  L +  +      + L            L P +    + +P + T    
Sbjct: 250 IGPVLSVVPAALLALLQSPIQVVNVLLLYLFLQSFEGYLLTPLVQKRTVAMPPVLTISVQ 309

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           V     +G  GL +   L+A + V+ +   + 
Sbjct: 310 VLFGTLLGFFGLMLATPLVAALMVLVRMLYVE 341


>gi|182625645|ref|ZP_02953414.1| putative domain of unknown function [Clostridium perfringens D str.
           JGS1721]
 gi|177909047|gb|EDT71522.1| putative domain of unknown function [Clostridium perfringens D str.
           JGS1721]
          Length = 345

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 54/322 (16%), Positives = 117/322 (36%), Gaps = 19/322 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
            +     VL + I  +   P+Y     + + +  FLA+   +SV+ L +  L  L     
Sbjct: 34  FRDIIFIVLVSGIFAYILKPLYRFLCERTKINKNFLAMSIVLSVIFLILFFLTVLIPSMF 93

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E +     +         V  +++D+   M   EL          +  + E  +     
Sbjct: 94  KEGESFDGLING-------VEAFINDLIMKMKFMEL---------GIFDVVEAQVTEKLN 137

Query: 147 DFIPRFASRFGMIFLDY---CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             +  FA+      + +    L+   + +  ++F   G  +S +          A  K +
Sbjct: 138 ILLVSFATSIINNLISFSENILAFAVIPVLAYYFLAYGDLLSNKFLYCCPMEKRALLKNL 197

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
            R V KV+    LG  ++++  G++      + G+   + L  + A++ +IP    +   
Sbjct: 198 GRDVDKVLGKYILGQLLLSLLVGVMTFIGMLILGIKFPLLLAFLNALLNIIPYFGAVLGA 257

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             +I + +         + L   I   I    + P +    I +  +     L+ G +  
Sbjct: 258 IPAIVVALVEGPNKILWVILTFLIIQQIEGNLIAPKITAESIDMHPILIIILLLIGEQIG 317

Query: 324 GLLGLFIGPVLMALIAVIWKES 345
           GLLG+     +  +I V++ + 
Sbjct: 318 GLLGMVFIVPIAVVIKVLFDDW 339


>gi|154486832|ref|ZP_02028239.1| hypothetical protein BIFADO_00664 [Bifidobacterium adolescentis
           L2-32]
 gi|154084695|gb|EDN83740.1| hypothetical protein BIFADO_00664 [Bifidobacterium adolescentis
           L2-32]
          Length = 507

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/353 (12%), Positives = 111/353 (31%), Gaps = 23/353 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYF--------LKGFFAPVLSALIIGFTSWPIYSSFISK 54
           +    P+ + R ++   I + L          ++     V+ +L +     P+    +  
Sbjct: 39  DPRRPPEWLGRALLYIAIAIVLLSFCWRSWGKIEYLIIDVVISLFLALAVEPVVIPLVKH 98

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
                +F ++ A + +  L  V         + ++  L + +    Q             
Sbjct: 99  -GWKRSFASIFALLMLGVLLCVMFGLFGNLFVQQVIALCNGLPALYQQ------------ 145

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
              + ++     L    SL       ++T+ +      A      F  + L+++ +I+  
Sbjct: 146 ICDFVAQYTDFKLPEINSLGGEILKNIQTSWVTDFAGTAISTVSGFFSFLLNLMTVIMTT 205

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           F+    G  + +             +  +  +    I S      I+A+           
Sbjct: 206 FYISAAGPKLRRAACQWMAPSAQRRFLFVWTVSQTQISSFLFSRAILAVLNAFFTSICLM 265

Query: 235 LAGVPSHVALGVITAIMA-MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
              VP  + L +   +++  IP  G  I      ++      ++ A  +  +  +   I 
Sbjct: 266 ALHVPYWMPLALFCGVVSQFIPMLGTYIGGALPVLFAWGSCGLWQAIAVVAFICVYQQIE 325

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +    P +    + +     F  ++      G +G F+   ++A I  I +  
Sbjct: 326 NLIFAPKISRRTMDVNDAVAFLAVLAFGSLFGAIGAFLALPIVASIQTIARTY 378


>gi|126723478|ref|NP_780727.3| hypothetical protein LOC242474 [Mus musculus]
          Length = 880

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 9/190 (4%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDG---FSISQQLDSLGEHLFPAYWKKIS-RIVPKVIR 212
           G   L++ LS+I  +  LF+        +   + + SL     P     I  + V + IR
Sbjct: 650 GTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIR 709

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI 271
             F     +A   GL     + + G+        + AI+  +P  G   +     + L +
Sbjct: 710 GVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWL 769

Query: 272 KGNIF-NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +   A  L ++  +  + VD  +   + GG        T   + GG   +GL G  I
Sbjct: 770 TQGLGCKAILLLVFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAII 826

Query: 331 GPVLMALIAV 340
           GP+L+ ++ V
Sbjct: 827 GPILLCILVV 836


>gi|119510569|ref|ZP_01629699.1| hypothetical protein N9414_18158 [Nodularia spumigena CCY9414]
 gi|119464730|gb|EAW45637.1| hypothetical protein N9414_18158 [Nodularia spumigena CCY9414]
          Length = 386

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/324 (15%), Positives = 120/324 (37%), Gaps = 15/324 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           I    ++       ++ A ++ F   +P+  S++ ++      +A++  +  + + +   
Sbjct: 36  ISAIFHYFHSLIVILVGASVLAFLLNYPV--SWMERQGARREQVAILVFLIALSILLALG 93

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + LF   + + ++LV+++      G      L+         +  T +L       ++  
Sbjct: 94  VTLFPLALTQAQQLVARLPELIDSGRSQLMMLNQ--------KAETLNLPINLDALVVQI 145

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                + +  I        ++     L  +  ++  F+  + G  + Q L       F A
Sbjct: 146 NDRVKSQLQAIAGQVLNLAVVTFTSLLDFLLTMVLTFYLLQHGGELWQSLVEWLPTRFRA 205

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
            + K  R+     ++ F+   I++      L   +    VP  +  G+   IMA++P G 
Sbjct: 206 PFSKTVRL---SFQNFFITQLILSTCMASALIPTFLWLKVPFGLLFGLTIGIMALVPFGG 262

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
                A++  L+   +      + +   I   I++  + P ++G    L  +     ++ 
Sbjct: 263 S-VGIALTTSLVALQDFSMGVKVLIAAVIVQQILENLIAPRILGNFTGLNPVWILISVLT 321

Query: 319 GVRTMGLLGLFIGPVLMALIAVIW 342
           G R  GLLG+ +      +I    
Sbjct: 322 GARVGGLLGVIVAVPTAVIIKTAL 345


>gi|167754689|ref|ZP_02426816.1| hypothetical protein CLORAM_00192 [Clostridium ramosum DSM 1402]
 gi|167705521|gb|EDS20100.1| hypothetical protein CLORAM_00192 [Clostridium ramosum DSM 1402]
          Length = 396

 Score = 70.6 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/298 (12%), Positives = 94/298 (31%), Gaps = 11/298 (3%)

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
            +      +   +  +CL ++    +    +  +  L+S               +     
Sbjct: 84  RKKRGLSIIATLILFICLIVLIASIVIPNLISSLISLISNTSAFLTSVFNNIDDI----F 139

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI---I 172
             +  +   ++++  + L  +    +    +D + R A        ++  +   +    I
Sbjct: 140 IYFNIDFRMENIASVKDLINMPWQDMVGQALDILTRSAGGIMNNATNFLSTFGVVFTGFI 199

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWK----KISRIVPKVIRSTFLGMTIIAIGEGLV 228
              +   +  +  +QL      L            +    +V  +   G  + A    ++
Sbjct: 200 FSLYLLGNKETFLRQLRKAIGALCGYKVTCVIFDYAHKTNEVFSNFISGQLVEACILWVL 259

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
                 L   P    +  I +I + +P   PI+   V   L++  +   A    ++  I 
Sbjct: 260 YYVTMKLFNFPYPELIATIISIFSFVPFFGPIAAMFVGAVLILSKDALMAIWFMVYFQIL 319

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
             + D  + P +VG  + LP +     +       G+ G+ I     A +  +  E I
Sbjct: 320 SQLEDNFIYPRVVGNSVGLPGIWVLLSIFVFGDLFGVFGMVIAVPSAACLYSLASEVI 377


>gi|148927564|ref|ZP_01811042.1| protein of unknown function UPF0118 [candidate division TM7
           genomosp. GTL1]
 gi|147887092|gb|EDK72582.1| protein of unknown function UPF0118 [candidate division TM7
           genomosp. GTL1]
          Length = 344

 Score = 70.6 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/342 (13%), Positives = 113/342 (33%), Gaps = 20/342 (5%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE-SSTFLAVIATVSVMCLFIVPLLFL 81
           S++  +     +  AL +        S    +    S      IA V V+ L     L +
Sbjct: 3   SVWSARDALLTIGIALFLALALNMPVSYIAKRLPGKSRAGATAIAFVLVVTLLGSFFLTV 62

Query: 82  FYYGMLEMKELVSKVVLANQH--GIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
               + +      ++    +   G  VP     I   + +  L  ++    ++ +  +  
Sbjct: 63  VPPVIEQTARFAERIPETIEDIKGQTVP-----IDNFVDSYGLRGQYDDALENTQKQAAN 117

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP-A 198
           F  + G  F+    +      LD  +  + +++  F    +G    Q+L  L  +     
Sbjct: 118 FASSLGGSFVSGVGA-----VLDAAVRTLIILVLTFLMLVEGPMWLQRLWGLYRNPTRLE 172

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VPSHVALGV----ITAIMA 252
             + +   + +V+     G  ++A            +     P    L +    +  +  
Sbjct: 173 RHRALVNRMYRVVSGYVTGQILVASIASTGSALTVLILSAFFPFPANLAMPVAAVVFVGG 232

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +IP         ++I LL   +   A    ++  I   + +  + P +    ++L  L  
Sbjct: 233 LIPMFGATIGGIIAIVLLALNDFTAAMLFTIYFVIYQQVENNFISPTVQSRTVELSALTV 292

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
              +  G+   G+LG  +   +   + V+  + +   +  +E
Sbjct: 293 LTAITIGLSLFGILGGIVSIPVAGCLRVLLNDYLEHNRRARE 334


>gi|149177786|ref|ZP_01856386.1| hypothetical protein PM8797T_08974 [Planctomyces maris DSM 8797]
 gi|148843436|gb|EDL57799.1| hypothetical protein PM8797T_08974 [Planctomyces maris DSM 8797]
          Length = 419

 Score = 70.6 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 65/203 (32%), Gaps = 2/203 (0%)

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           T        F            ++++ ++    F      +    +  L         + 
Sbjct: 201 TQPAQQAMSFVGSMFKSTFGVVVNVVLILFVGLFLAVSPQTYRDGVVVLFPPERRDRIQG 260

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   +   +    LG     I  GL       L GVP    LG+I+ ++  IP    +  
Sbjct: 261 LMTQLSDTLWHWLLGRFGSMIITGLGAWLVLSLIGVPMAGTLGLISGLLTFIPNIGSLIA 320

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF-LPTFFGLVGGVR 321
             ++I + +      A  +         +    + P +    + LP  L   F  + GV 
Sbjct: 321 FCLAILIALPKGPTTAALVVPAFIGLQLVESYLITPLIQEQQVSLPPALLISFQAIMGV- 379

Query: 322 TMGLLGLFIGPVLMALIAVIWKE 344
             G LG  +   L+A   VI +E
Sbjct: 380 LFGFLGAMVASPLLAASKVIVQE 402


>gi|331674959|ref|ZP_08375716.1| putative membrane protein [Escherichia coli TA280]
 gi|324009362|gb|EGB78581.1| hypothetical protein HMPREF9532_00949 [Escherichia coli MS 57-2]
 gi|331067868|gb|EGI39266.1| putative membrane protein [Escherichia coli TA280]
          Length = 376

 Score = 70.6 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 114/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +       +A   V
Sbjct: 41  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITIV 95

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E +S +   N+                       + +   
Sbjct: 96  VVVMLIALTALVGVLAASFNEFISMLPKFNKELT--------------RKLFKLQEMLPF 141

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++  
Sbjct: 142 LNLHMSPERILQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMR- 200

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+  +
Sbjct: 201 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGIIVWLGLELMGVQFALMWAVLAFL 259

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA IS     I +L+   I+    +     +   ++   L P ++G  + +  
Sbjct: 260 LNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGMST 319

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 320 MVVFLSLLIWGWLLGPVGMLL 340


>gi|209886510|ref|YP_002290367.1| putative domain of unknown function [Oligotropha carboxidovorans
           OM5]
 gi|209874706|gb|ACI94502.1| putative domain of unknown function [Oligotropha carboxidovorans
           OM5]
          Length = 365

 Score = 70.6 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 59/348 (16%), Positives = 118/348 (33%), Gaps = 31/348 (8%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +++  I+  LY  +GFF PV++A+I+G    P      + +       A+I  ++ +  
Sbjct: 36  ALLVLSIVAVLYVARGFFLPVVTAVILGTMLSPAAKRLEALRIPRPVSAALIVVLTWIAF 95

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             +  L                        +PV  W   +P      +        P ++
Sbjct: 96  VFIIGLI----------------------SVPVVEWFDKLPELGPILKNKLHVFDRPLAI 133

Query: 134 KILSETFLKTNGID-------FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
               +  L +            +         +   +   ++F  + + F          
Sbjct: 134 WQQLQVLLGSPEGAEQPFQFPKVAWVQPTIEFLSPTFTEILLFFAVLVLFIASWPDLRRA 193

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            + +  +        +I   +   +    L +T+I  G G+  G A  LAG P+   LG 
Sbjct: 194 LVMNFQDRDSRLRTLRILNAIETKLGGYLLTVTVINAGLGIATGLACALAGTPNPAGLGA 253

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIF--NATCLFLWGAIELFIVDKTLRPFLVGGP 304
           + A +  IP   PI    V + + I        A    L  A   F+    + P ++G  
Sbjct: 254 LAATLNFIPIIGPILMFVVLLGVGIVAAPTLSGALVAPLAFAAFAFVEGHFVTPAIIGRR 313

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           + L  L  F  L       G +G F+   L+ +  +I +  +   +++
Sbjct: 314 LALNALAVFLALAFWTWLWGPMGAFLSSPLLIVGLIIKEHMLPEREQS 361


>gi|26250089|ref|NP_756129.1| hypothetical protein c4267 [Escherichia coli CFT073]
 gi|26110518|gb|AAN82703.1|AE016768_121 Hypothetical protein yhhT [Escherichia coli CFT073]
          Length = 376

 Score = 70.6 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 114/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +       +A   V
Sbjct: 41  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITIV 95

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E +S +   N+                       + +   
Sbjct: 96  VVVMLIALTALVGVLAASFNEFISMLPRFNKELT--------------RKLFKLQEMLPF 141

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++  
Sbjct: 142 LNLHMSPERILQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKM-R 200

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+  +
Sbjct: 201 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGIIVWLGLELMGVQFALMWAVLAFL 259

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA IS     I +L+   I+    +     +   ++   L P ++G  + +  
Sbjct: 260 LNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGMST 319

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 320 MVVFLSLLIWGWLLGPVGMLL 340


>gi|84515334|ref|ZP_01002696.1| Lipocalin-related protein and Bos/Can/Equ allergen [Loktanella
           vestfoldensis SKA53]
 gi|84510617|gb|EAQ07072.1| Lipocalin-related protein and Bos/Can/Equ allergen [Loktanella
           vestfoldensis SKA53]
          Length = 367

 Score = 70.6 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 52/353 (14%), Positives = 113/353 (32%), Gaps = 28/353 (7%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           M + LV L+ L     P +    I +   P+          S      I T+    +FI+
Sbjct: 16  MAVFLVVLWALGDVILPFVLGGAIAYLLDPVADRLQRA-GLSRVLAVSIITLVAALVFIL 74

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +L +    + +   L++            P     +  G+ A              ++ 
Sbjct: 75  LILLVIPTLVKQTTALIN----------TAPALFERLQAGLTARFPDLIEPESTIRQQLQ 124

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           +           +        M  ++  + ++ + +  F+   D  ++  ++DSL     
Sbjct: 125 AIGETIQARGGELINGVLSSAMGLVNIIVLLVIVPVVAFYLLLDWDNMIAKIDSLLPRDH 184

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
            A  + +   + + + S   G   + +  G        LAG+   + +G I  ++  IP 
Sbjct: 185 VATVRHLGSEIDRTLASFIRGQGTVCLILGTYYALGLMLAGLNFGLIVGFIAGLITFIPY 244

Query: 257 G-----------------APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
                                   A    +    N      +    A+  F+    L P 
Sbjct: 245 VGALVGGALALGLALFQFWGAVELADGDTVTYATNWLRIGIVGAIFALGQFLEGNVLTPK 304

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           LVG  + L  +   F L       G +G+ +   + A+I V+ +  +   +++
Sbjct: 305 LVGSSVGLHPVWLIFALSVFGSLFGFVGMLVAVPVAAVIGVLIRYGLGQYRDS 357


>gi|186680650|ref|YP_001863846.1| hypothetical protein Npun_F0102 [Nostoc punctiforme PCC 73102]
 gi|186463102|gb|ACC78903.1| protein of unknown function UPF0118 [Nostoc punctiforme PCC 73102]
          Length = 345

 Score = 70.6 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 55/350 (15%), Positives = 131/350 (37%), Gaps = 23/350 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVL----SALIIGFT-SWPIYSSFISKKEESST 60
           LN   ++R++++     ++  L  +F  V+     A I+ F  S+P+Y     ++     
Sbjct: 13  LNNLALVRFLLLVASGWAIVQLLAYFEAVIVIFTFAAILAFLLSYPVYGL---RRFLPHG 69

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               +  +  + +    ++ +    + + ++L+  +       +P+   L          
Sbjct: 70  VAVGVVFLLSIVIIGGLIITVGLTVLSQGQQLIDSITAFLNSLVPLLEGLEGF------- 122

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                   + Q      E  L+   +  +    +     F+   ++ I + +  FF   D
Sbjct: 123 ----LRTRNLQIDLSFIEEQLRNQAVSTLVTSLAIL-QGFMTNFVTFILIAVVAFFMLLD 177

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +   +  +          + + I+ +     F G  +++          + +  VP 
Sbjct: 178 GDKLWNFILKIVPK---QRRNRFTNIIRRSFLGFFRGQLLLSGFLTSSTFLVFLVLKVPF 234

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + L +I  I+ +IPG       +     ++   ++ A  + +   I   I D  + P +
Sbjct: 235 ALILSIIIGIVDIIPGIGATLGVSTVTLFVLSQGVWLALKVLIACIILQQIQDNLIAPRI 294

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           + G + L  +  FF L+ G R  GLLG+FI   +  +I  +++   M  +
Sbjct: 295 MQGALNLNPVVIFFALLVGARVAGLLGVFISIPIAGVIVSLFEIDEMKSE 344


>gi|182417082|ref|ZP_02948460.1| putative protein of unknown function [Clostridium butyricum 5521]
 gi|237668993|ref|ZP_04528977.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182379091|gb|EDT76595.1| putative protein of unknown function [Clostridium butyricum 5521]
 gi|237657341|gb|EEP54897.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 390

 Score = 70.6 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 60/358 (16%), Positives = 124/358 (34%), Gaps = 27/358 (7%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI-----------SKKEESSTFLAV 64
           I+  +L  ++ +     P+L A++I +  +PI                 K         +
Sbjct: 36  ILGNVLSVIFSIISLLKPLLLAIVIAYILYPITKLIENFLENNKILKIQKFGTRRITAVI 95

Query: 65  IATVSVMCLFIVPLLFLFYYGMLE------MKELVSKVVLANQHGIPVPRWLSDIPGG-- 116
           ++ VSV+ +    +  +++    +      +  ++S + L   +       + +      
Sbjct: 96  LSYVSVLAILTALIWGIYFMIGGQLSSNTTIANIISDINLYFDNNPFSASSIKETIESFN 155

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
                    ++    +L         +N    +    S     F+ + +SI  +  + +F
Sbjct: 156 SPIISALQPYIVDGFNLIQTYVMKNLSNMTSSLVSIGSSIATFFIAFIISIYLLKDSEYF 215

Query: 177 FYRDGFSISQQLDSLGEH--LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
                 SI ++L  L             I  I+ +V      G  + A   G++   A  
Sbjct: 216 I-----SIWKKLYYLIFRGGSAGNKLNYIFSIIHEVFGKFIRGQLLEAFFVGVLSSIALS 270

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           +AG+     +G I  I  MIP   PI  T ++  + +           +   + +  +D 
Sbjct: 271 IAGIKYSFVIGTIAGISNMIPYVGPIVGTVLAAVMGLLSGNPIKILYAIIAMLIVQQIDN 330

Query: 295 -TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             L P +VG  + L  + T   ++ G    GLLG+ I   L A   V++        E
Sbjct: 331 QLLAPQIVGNSVGLHPVFTMMAILIGGNVGGLLGMLIAVPLAASFKVLFTTWYHKHIE 388


>gi|328886993|emb|CCA60232.1| integral membrane protein [Streptomyces venezuelae ATCC 10712]
          Length = 362

 Score = 70.6 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 55/334 (16%), Positives = 111/334 (33%), Gaps = 19/334 (5%)

Query: 13  RWMIMFIILVSLYFLKGFF----APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           R +I+ +++ SL+ + G F      +   L+I     P+                 +  +
Sbjct: 22  RILIVGVLVYSLFAVLGRFHEIGVALFLGLVITALLRPLADLVARGLP--RPIAVALTLL 79

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + L +  L  +      E   LV +          +  WL   P  +    L      
Sbjct: 80  GSIALVLGVLALVGEAVAGERSTLVREFRDGIGR---IEDWLERPPFRLDPGAL------ 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               L+     FL ++    I   A       +    ++   + +  FF   G       
Sbjct: 131 --GGLQARIGEFLSSHRSTLISE-AVSGAHHVVAVLTTLALALFSSVFFIHSGDRQWAWF 187

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                           R   +       G+ ++A    +++G A WL GVP  V L ++ 
Sbjct: 188 KEQLPGSVRERVATGGRAAWRTFTGYTHGIVLVAAVNAVLVGIALWLLGVPLAVPLALLE 247

Query: 249 AIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A +P  G+P++    ++  L       A  +     +   I    L P ++   ++L
Sbjct: 248 FLAAFVPLIGSPVALAVAAVVALAAKGPVVAAIVIGLIVVIGQIEGHLLHPIVMSWAVRL 307

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             L     +V G    G++G  +   L+++I  +
Sbjct: 308 HPLVVAVTVVAGTIAAGIVGAVVAVPLVSVIWSV 341


>gi|88608019|ref|YP_506086.1| PerM family permease [Neorickettsia sennetsu str. Miyayama]
 gi|88600188|gb|ABD45656.1| permease, PerM family [Neorickettsia sennetsu str. Miyayama]
          Length = 327

 Score = 70.6 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/329 (14%), Positives = 111/329 (33%), Gaps = 21/329 (6%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
                 + I+ +      +   +    S    +++    +  L I+           ++ 
Sbjct: 2   LFAFAFSFILAYFLNRSTTKLAALI-GSRGIASLLVVAFLSILVILVFSLAIPLLYHQLI 60

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK--TNGIDF 148
             +             P+ ++ I   +  S          + +  L E  L         
Sbjct: 61  LFLKGA----------PQLIAYIENSIKISSPGLHSFLEERGMSSLFEYILSLVPQLSTK 110

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           I +      ++  +  + +IF  + LF+  +D   ++  +  +        +     ++ 
Sbjct: 111 ITQHLWNSTLVLANIVILLIFTPVILFYLLQDWPKMTNAIKEIIPLKHRTAFSNQVTLMD 170

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
             I    LG   I+   G++     + AG+P +  +GV T ++ +IP    I+    S  
Sbjct: 171 ASISGYVLGQMKISFILGVLYTVLLFFAGMPYYFLIGVSTGMLTIIPYFGNITGLITSHL 230

Query: 269 LLIKG-----NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
           + +       ++   T +F++      +    L P L+   + L  L   F +  G    
Sbjct: 231 VALSRASSILDVLPITLIFIFCGAIEGL---FLSPKLLSKSVNLHPLWVIFSMTVGGMLC 287

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           GL G+ +   + A +A   +  I   K++
Sbjct: 288 GLAGILLAVPVAATVAGFVRLGISYYKDS 316


>gi|325168727|ref|YP_004280517.1| integral membrane transporter [Agrobacterium sp. H13-3]
 gi|325064450|gb|ADY68139.1| integral membrane transport protein [Agrobacterium sp. H13-3]
          Length = 667

 Score = 70.6 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/305 (12%), Positives = 97/305 (31%), Gaps = 15/305 (4%)

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE--------LVSKVVLANQHG-- 103
           +K       AVI  V+   + I    F+    +  + E        +V+KV   +Q G  
Sbjct: 90  RKHSVPKIAAVILAVASAFMAIALFSFVVATQVTNLAENIPTYQRNIVTKVQALSQAGSG 149

Query: 104 ---IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIF 160
              +     + +  G    +           +  +     ++             F +  
Sbjct: 150 NGVLEHLSKVVERVGAELQTRAVESQDEQSTAPTMREPMPVEIVTRSHPVETLGNFILPL 209

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
           +    +   +I+ + F   +   +  +   L             +   K +    L   +
Sbjct: 210 ISPFATAGLVIVLVIFMLIEREDLRDRFIRLVGLGDLHRTTAALQDAGKRVGKYLLMQLV 269

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC 280
           +       +    W+ G+P+ +  G++T ++  +P   P+    + ++L +  +   +  
Sbjct: 270 VNALYAFPITIGLWVLGIPNAILWGLLTLVLRFVPYIGPVIGMVLPLFLALAISPGWSLV 329

Query: 281 LFLWGAIELF--IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             +     +   I +  + P+L G    L  +      +      G LGL +   L   +
Sbjct: 330 AGVAALFIITELISNNVVEPWLYGSHTGLSPMAIIISAIFWSWLWGPLGLMLSTPLTVCL 389

Query: 339 AVIWK 343
            V+ +
Sbjct: 390 VVLGR 394


>gi|308050275|ref|YP_003913841.1| hypothetical protein Fbal_2565 [Ferrimonas balearica DSM 9799]
 gi|307632465|gb|ADN76767.1| protein of unknown function UPF0118 [Ferrimonas balearica DSM 9799]
          Length = 362

 Score = 70.6 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/326 (14%), Positives = 113/326 (34%), Gaps = 25/326 (7%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            ++L  +        P L AL I     P+    +  K   S     +A  +VM   I+ 
Sbjct: 23  MVVLAGIKSASAIVVPFLLALFIAIICSPLVRGLMRLKLPRS-----VAIFAVMAFVILA 77

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
             ++       + +   ++                       +E +   L       I +
Sbjct: 78  GTWIATLVGSSINDFTRQLPEYR----------------AQLTEAFGVVLEKANQFNIST 121

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
           +   +      +   A+           +++ +++ + F   +   ++++L         
Sbjct: 122 DQLKEQFDPGRLMSVATNIVSSLGGLMTNMLLIVLTVVFMLFESAGLNRKL-HYALDDPQ 180

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-G 256
              K+I R +  V R   +    +++G G++ G   +L GV   +  G++  +   IP  
Sbjct: 181 MRLKQIDRFLESVNRYLAIKTV-VSLGTGIICGLGLYLIGVDYFLLWGLVAFLFNYIPNI 239

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           G+ I+        LI+  +  A  +         ++   + P ++G  + L  L  F  L
Sbjct: 240 GSIIAAIPPVALALIQLGVGPAAGVAGLYVAVNMVMGNLVEPRMMGRSLGLSTLVVFLSL 299

Query: 317 VGGVRTMGLLGLFIG-PVLMALIAVI 341
           +     +G +G+ +  P+ M +   +
Sbjct: 300 IFWGWLLGSVGMLLSVPLTMIVKIAL 325


>gi|327405457|ref|YP_004346295.1| hypothetical protein Fluta_3486 [Fluviicola taffensis DSM 16823]
 gi|327320965|gb|AEA45457.1| protein of unknown function UPF0118 [Fluviicola taffensis DSM
           16823]
          Length = 380

 Score = 70.6 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 62/339 (18%), Positives = 126/339 (37%), Gaps = 19/339 (5%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + I   +++ +I V ++       PV+ A I G    PI S    K         +I  
Sbjct: 9   QKRIFNILLLVVIGVIVFLGSDILFPVILAFIFGVLIRPIDSFLQKKWRFPKILSVIITV 68

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
              + +F   L  L         +L        +    +  W++            T  +
Sbjct: 69  AIAIVIFAGVLFLLGLQLKDFFSDLPKLEKNMMKVIHDIGDWINH-----------TFGI 117

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           S+ +  KI+ E  +K   +  +  F +  G       ++ I + + LF F      +   
Sbjct: 118 SNLKQEKIVKENLMKGGSLVSMESFGTLTGA-----LVNFILVPLYLFLFLFYRELLLGF 172

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L  L         + I   +  +IR   LG+ +       +     WL GV   + LG++
Sbjct: 173 LMRLVSAKSSERMQIIVNDIKVIIRMYILGLLLEIAIVAALTTLGLWLIGVKYSLFLGLL 232

Query: 248 TAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGP 304
            A++ +IP    +   F +  I L    +I  +    +     + ++D   L P +VG  
Sbjct: 233 VALLNLIPYVGILVANFLSCLISLSNNPDIQQSVLGMVAVIGVVQLIDNNILLPRIVGSK 292

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +++  L +   ++ G    G+ G+F+   + A++ V++ 
Sbjct: 293 VRINALASILSVIVGGALAGVSGMFLAIPITAILKVVFD 331


>gi|170782757|ref|YP_001711091.1| putative integral membrane protein [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169157327|emb|CAQ02514.1| putative integral membrane protein [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 411

 Score = 70.6 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 101/287 (35%), Gaps = 13/287 (4%)

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                 I+ + V+      +  +    + +   + ++ +        +  +L+D P  + 
Sbjct: 102 KWLAVAISEIGVIVAVAALVYLVTTQIIGQYDSIRAQTLTRY---ADLRGFLTDGPLQLS 158

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +L   +     +++  +   L           A             ++ ++ +  F  
Sbjct: 159 EQQLNDAYAQAVDAVQRDAGALLSG---------ALSVTSSLGHVLTGVLLVLFSTLFIL 209

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            DG  + + +  L   L         +     +++      ++A+ + + +     + GV
Sbjct: 210 IDGAGMWRWVVRLFPRLARPAVDGAGKAGWTTLQNFVKVQVLVALIDAVGIAGGAAIIGV 269

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P  + +GV+  + + IP    +    +++++ L+   +  A  +     +   I    L+
Sbjct: 270 PLAIPIGVLVFLGSFIPIVGAVVTGTLAVFVALVYNGLTQALIMVGIVLLVQQIEGHVLQ 329

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           P ++G  +K+  L     +  G    G+ G F    L+A +  + K 
Sbjct: 330 PLIMGSVVKVHPLAVVLSVAAGGMVAGIAGTFFAVPLVATLNSMVKH 376


>gi|150015906|ref|YP_001308160.1| hypothetical protein Cbei_1020 [Clostridium beijerinckii NCIMB
           8052]
 gi|149902371|gb|ABR33204.1| protein of unknown function UPF0118 [Clostridium beijerinckii NCIMB
           8052]
          Length = 381

 Score = 70.6 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 113/326 (34%), Gaps = 12/326 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
            +P + A+I  +   P+ S F +  +       +I    ++ L I+ L F     +  + 
Sbjct: 47  MSPFIYAIICAYILNPVVSFFENNFKTRRAISILITYFIIIALIIIILFFTIPSIVDSIV 106

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG-IDFI 149
            +  ++    +    + +W++ +        L  +     +  ++ S+    T G +   
Sbjct: 107 NITKEMPAYVEI---IQKWINTLLQNERIKTLIVQAGLLNKLQEMSSQIGSVTIGLLQNF 163

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK----ISR 205
             +   F    +      +  I  L     D   + ++  ++   +F            R
Sbjct: 164 VMYLLSFTSNLVSVIFGFLISIYVLL----DKEKLLKRARTITYMIFNEEKGNKLVTFIR 219

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              K+I        I +    L+      + G P    + +I  I  MIP   P+    V
Sbjct: 220 TYNKMIGVYIGIKAIDSAIISLISLIGLLIVGEPYAPLIALIEGITNMIPYFGPLIGEVV 279

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
              + I  +   A  +F+            L P L+G  + +  L    G+  G    G 
Sbjct: 280 GAGVAIFVSPMKAFMVFILLLCIHLFDAWYLDPKLIGKKVGVSPLGIILGVAIGGGFWGP 339

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKE 351
            G+ +G   MA I + +++++   ++
Sbjct: 340 FGMLLGSPTMATIKIYYEKTVEEFRK 365


>gi|237733563|ref|ZP_04564044.1| permease [Mollicutes bacterium D7]
 gi|229383396|gb|EEO33487.1| permease [Coprobacillus sp. D7]
          Length = 396

 Score = 70.6 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/298 (12%), Positives = 94/298 (31%), Gaps = 11/298 (3%)

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
            +      +   +  +CL ++    +    +  +  L+S               +     
Sbjct: 84  RKKRGLSIIATLILFICLIVLIASIVIPNLISSLISLISNTSAFLTSVFNNIDDI----F 139

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI---I 172
             +  +   ++++  + L  +    +    +D + R A        ++  +   +    I
Sbjct: 140 IYFNIDFRMENIASVKDLINMPWQDMVGQALDILTRSAGGIMNNATNFLSTFGVVFTGFI 199

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWK----KISRIVPKVIRSTFLGMTIIAIGEGLV 228
              +   +  +  +QL      L            +    +V  +   G  + A    ++
Sbjct: 200 FSLYLLGNKETFLRQLRKAIGALCGYKVTCVIFDYAHKTNEVFSNFISGQLVEACILWVL 259

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
                 L   P    +  I +I + +P   PI+   V   L++  +   A    ++  I 
Sbjct: 260 YYVTMKLFNFPYPELIATIISIFSFVPFFGPIAAMFVGAVLILSKDALMAIWFMVYFQIL 319

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
             + D  + P +VG  + LP +     +       G+ G+ I     A +  +  E I
Sbjct: 320 SQLEDNFIYPRVVGNSVGLPGIWVLLSIFVFGDLFGVFGMVIAVPSAACLYSLASEVI 377


>gi|257465432|ref|ZP_05629803.1| putative permease perM-like protein [Actinobacillus minor 202]
 gi|257451092|gb|EEV25135.1| putative permease perM-like protein [Actinobacillus minor 202]
          Length = 350

 Score = 70.6 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/338 (13%), Positives = 106/338 (31%), Gaps = 11/338 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            +PQ I    I+      +YF  G   P+L A+++ +           K         ++
Sbjct: 14  NDPQTIALLGILLFGFGIIYFFSGLIMPLLIAIVLAYLLESPIRFLTEKLHFPRLLSVLL 73

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
                + +    L+ +      +    +  +         +  W+  +P        +  
Sbjct: 74  VFGGSISIVAFLLVVMVPSLWNQAVNFIRDLPNMFNL---LNEWVQALPEHYPGLVDYAM 130

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                 SLK     + ++     +    S  G+    + + ++      FF  +D     
Sbjct: 131 LDGLMSSLKTKILGYGESLLAISVNSIISLVGLGVYAFLVPLMV-----FFLLKDKPIFL 185

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +          ++   +   I S   G  +  +  G+V         +   + L 
Sbjct: 186 RSFIKMMPK-NRRLATRVWIEMQGQIASYIRGKFLEILIVGIVTYIILIFFDLRYPLLLS 244

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGG 303
           V+  +  ++P  GA I    V++  L +  +       L   +   ++D   + PFL   
Sbjct: 245 VVVGLSVLVPYIGAVIVTIPVALIALFQFGLSPDFYYLLLAFVISQLLDGNLVVPFLFSE 304

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            + L  L     ++      G  G+F    L  L+  +
Sbjct: 305 AVNLHPLTIIVAVLIFGGLWGFWGVFFAIPLATLVKAV 342


>gi|255528013|ref|ZP_05394850.1| protein of unknown function UPF0118 [Clostridium carboxidivorans
           P7]
 gi|255508282|gb|EET84685.1| protein of unknown function UPF0118 [Clostridium carboxidivorans
           P7]
          Length = 264

 Score = 70.6 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 79/186 (42%)

Query: 159 IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
                 +SI  + I  ++F  DG +I+ +L +          KKIS+ + K++    +  
Sbjct: 73  NIGQNIVSIAVIPIISYYFLADGDNIANKLLNFFPINSRNMVKKISKDIDKILGRYIVSQ 132

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA 278
            ++    G+V  +      +   + L ++ A   +IP   P+     +I++ +  +   A
Sbjct: 133 LLLCAFIGIVTFAILIFLHIDFPIILSILNAFFNIIPYFGPVFGAVPAIFIALIKSPQKA 192

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             + +W  +   I    L P + G  + +  L     LV G +  G LG+ +   +  +I
Sbjct: 193 MWVLIWLYLLQQIEGNILSPKITGDSVNMHPLMVIILLVVGGKIAGFLGMILAIPVGVMI 252

Query: 339 AVIWKE 344
            VI+++
Sbjct: 253 KVIYED 258


>gi|254038642|ref|ZP_04872698.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|300930985|ref|ZP_07146343.1| conserved hypothetical protein [Escherichia coli MS 187-1]
 gi|300946776|ref|ZP_07161021.1| permease, PerM family [Escherichia coli MS 116-1]
 gi|300956810|ref|ZP_07169076.1| hypothetical protein HMPREF9547_02618 [Escherichia coli MS 175-1]
 gi|301645918|ref|ZP_07245831.1| conserved hypothetical protein [Escherichia coli MS 146-1]
 gi|331644174|ref|ZP_08345303.1| conserved hypothetical protein [Escherichia coli H736]
 gi|331655057|ref|ZP_08356056.1| conserved hypothetical protein [Escherichia coli M718]
 gi|912460|gb|AAB18449.1| unnamed protein product [Escherichia coli str. K-12 substr. MG1655]
 gi|226839148|gb|EEH71171.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|300316394|gb|EFJ66178.1| hypothetical protein HMPREF9547_02618 [Escherichia coli MS 175-1]
 gi|300453570|gb|EFK17190.1| permease, PerM family [Escherichia coli MS 116-1]
 gi|300461163|gb|EFK24656.1| conserved hypothetical protein [Escherichia coli MS 187-1]
 gi|301075827|gb|EFK90633.1| conserved hypothetical protein [Escherichia coli MS 146-1]
 gi|331036468|gb|EGI08694.1| conserved hypothetical protein [Escherichia coli H736]
 gi|331047072|gb|EGI19150.1| conserved hypothetical protein [Escherichia coli M718]
          Length = 376

 Score = 70.6 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/321 (13%), Positives = 115/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +       +A   V
Sbjct: 41  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITIV 95

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E +S +   N+               +       + +   
Sbjct: 96  VVVMLIALTALVGVLAASFNEFISMLPKFNKE--------------LTRKLFKLQEMLPF 141

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++  
Sbjct: 142 LNLHMSPERMLQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKM-R 200

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+  +
Sbjct: 201 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGVIVWLGLELMGVQFALMWAVLAFL 259

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA IS     I +L+   ++    +     +   ++   L P ++G  + +  
Sbjct: 260 LNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMST 319

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 320 MVVFLSLLIWGWLLGPVGMLL 340


>gi|283797416|ref|ZP_06346569.1| sporulation integral membrane protein YtvI [Clostridium sp. M62/1]
 gi|291074773|gb|EFE12137.1| sporulation integral membrane protein YtvI [Clostridium sp. M62/1]
          Length = 379

 Score = 70.6 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 52/334 (15%), Positives = 116/334 (34%), Gaps = 8/334 (2%)

Query: 16  IMFIILVSLY--FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           +  I LV  +   L GFF P +   +I   + P+      +        + +  V V+ L
Sbjct: 18  LTGIYLVCFWGPKLLGFFIPFVIGWVIALIANPLVRFLERRMRIVRKHGSALIIVGVLAL 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            I+ L  +      E+++ +  +    ++     +   +  GG     L  +       +
Sbjct: 78  IILLLYLVIGKLYTELRDFIGALPALYENAALEIQGALE-NGGRLFEFLPDEFQETVARV 136

Query: 134 KILSETFLKTNGIDFIP---RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                +++              A        +  ++ +  I++ + F  +   + + +  
Sbjct: 137 TENLGSYMGQIVSKAAAPTVEIAGNVAKGIPNALVNTVITILSAYIFIAEQDRMMEWMRG 196

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +       Y   + +    +I   FL    I      +L   +    V   + L V+ AI
Sbjct: 197 ILPEFILRYIAYLKKDAKGLIGGYFLAQFRIMFVVAAILAVGFLFLHVSYGLVLAVLIAI 256

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  G   +    +   L  G+   A  L +   +   +  + ++P +VG  + LP 
Sbjct: 257 LDFLPVFGTGTALFPWAAVKLFTGDYGYAAGLLILYVVTQ-VARQLIQPKIVGDSMGLPP 315

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L T   L  G +  GL G+ +   +  +    +K
Sbjct: 316 LMTLLLLYLGFKVKGLAGMILAVPIGLIFINFYK 349


>gi|160915706|ref|ZP_02077914.1| hypothetical protein EUBDOL_01715 [Eubacterium dolichum DSM 3991]
 gi|158432182|gb|EDP10471.1| hypothetical protein EUBDOL_01715 [Eubacterium dolichum DSM 3991]
          Length = 347

 Score = 70.6 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 60/332 (18%), Positives = 118/332 (35%), Gaps = 7/332 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I+ ++ V  Y++   F P L    I +   PI   F           +        C   
Sbjct: 19  ILALLYVLFYYVIPLFLPFLIGFAIAYILRPIVFRFTQ--GNHIRLYSTALLFLFYCFLA 76

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP--QSL 133
           + L  +   G+L +++L+ ++    Q  I      SD+     + EL    + H     L
Sbjct: 77  LLLFIVALKGILLLQDLMEQLPAFYQQYIAPYLAQSDLQVSNLSKELPFADILHSLLIQL 136

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           +    +FL      F+    S+  +   +   ++   I++ FF   D   I+  + S   
Sbjct: 137 QQSLASFLSKLTSSFLYTI-SKLMLSLPNILFAMFLSIVSSFFINADYQGITTAITSKLP 195

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
             +     + S++V   ++       I+ +   L L     L  V     +    A+  M
Sbjct: 196 KAWRIKLLRTSKLVKTTLKQMAKAYGILLLCTFLQLWLGLVLLKVHKAALIAFGIALFDM 255

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +P  G        +    I G+   A  L L   + + I+   L P ++   +      T
Sbjct: 256 LPILGCGGILLPWAFVSYIAGSTKLAVGLLL-LNLIIGIIRSILEPKILSSKLGQHPFVT 314

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              +  G +  G+ G+ + P +  LI  + +E
Sbjct: 315 LIAMYVGGKLFGICGMLLAPFVCMLIQKLQQE 346


>gi|297250462|ref|ZP_06864359.2| acetyltransferase, GNAT family [Neisseria polysaccharea ATCC 43768]
 gi|296838854|gb|EFH22792.1| acetyltransferase, GNAT family [Neisseria polysaccharea ATCC 43768]
          Length = 366

 Score = 70.6 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 57/337 (16%), Positives = 120/337 (35%), Gaps = 8/337 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + + +++   + L    AP   A ++ +   P+      KK  +    ++   +  + L 
Sbjct: 27  VFLTVLIWLAFILGDTLAPFAVAAVLAYVLDPLVEWL-QKKGFNRAVASMTVMIFALLLL 85

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
              LL +    + +   +VS++             L     G +        ++  Q+  
Sbjct: 86  AALLLIIVPMLVGQFNSMVSRLPQLAGFMQNTLLPLLKETVGNYVEIDQASVIAWLQAHT 145

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                 LK      + R +S       +  L  + +   L     D    S  +  L   
Sbjct: 146 GELSNTLK-AWFPVLMRQSSNIVSSIGNLMLLPLLLYYFL----LDWQRWSCGISKLVPR 200

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +
Sbjct: 201 RFADTYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLVLVGLDSGFAIGMLAGILVFV 260

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGGPIKLPFLPT 312
           P     +   ++    +         L +W    +  F+    + P +VG  I L     
Sbjct: 261 PYLGAFTGLLLATVAALLQFASWNGILAVWVVFAVGQFLESFFITPKIVGDRIGLSPFWV 320

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            F L+   + MG +G+  G  L A+  V+ +E +   
Sbjct: 321 IFSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVQKY 357


>gi|261364622|ref|ZP_05977505.1| acetyltransferase, GNAT family [Neisseria mucosa ATCC 25996]
 gi|288567211|gb|EFC88771.1| acetyltransferase, GNAT family [Neisseria mucosa ATCC 25996]
          Length = 356

 Score = 70.6 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 66/342 (19%), Positives = 140/342 (40%), Gaps = 10/342 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I+   ++   +  LY L     P + A ++ +   P+      K+ + +   ++I  V  
Sbjct: 13  IIMGCVIAAFVWLLYALGDILTPFIVAAVLAYVLNPLVEWLQKKRIKRAP-ASMIVMVLA 71

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           + L +  +L +    + +   +VS++  + +     +  WL++      A +        
Sbjct: 72  LLLLLSLMLIIVPMLINQFNNMVSRIPQIVDFTQNKLLPWLNN-----AAGDYMQIDQES 126

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             +        L      ++P    + G +      ++I + + L++F  D    S  + 
Sbjct: 127 VIAWLQSHTGELSNTLKAWMPTLMRQSGNVISGMS-NLILLPLLLYYFLLDWKRWSYGIS 185

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +L    F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G+I  
Sbjct: 186 ALVPRRFIDTYTRITSNMDEVLGEFLRGQLMVMLIMGLVYGVGLMLVGLDSGFAIGMIAG 245

Query: 250 IMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLF-LWGAIELFIVDKTLRPFLVGGPIKL 307
           I+  IP  GA       ++  L++ + +N   +  +  AI  F+    + P +VG  I L
Sbjct: 246 ILVFIPYLGAFTGLLLATVAALLQFSTWNGLIMVWVVFAIGQFLESFIVTPKIVGDRIGL 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
                 F L+   + MG +G+  G  L A+  V+ +E + A 
Sbjct: 306 SPFWVIFSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVNAY 347


>gi|254476754|ref|ZP_05090140.1| membrane protein [Ruegeria sp. R11]
 gi|214030997|gb|EEB71832.1| membrane protein [Ruegeria sp. R11]
          Length = 355

 Score = 70.6 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 57/356 (16%), Positives = 123/356 (34%), Gaps = 19/356 (5%)

Query: 4   TMLNPQGIMRWMIMFIILVSL-YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
            +   + +  W I  ++   + + L     P +    I +   PI          S T  
Sbjct: 2   ALPAQKQLKYWGIAAVVFAVVMWALGDVLLPFVLGAAIAYLIDPIADRLEDA-GLSRTAA 60

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
               TV+ + LF+V LL +    + +M +L   +  A  +               +A + 
Sbjct: 61  TATITVAAVLLFVVMLLVVVPTLIYQMMDLARVLPEAFNNL------------REFAQQH 108

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGM--IFLDYCLSIIFMIIALFFFYRD 180
                      +    +  +T     I       G     ++  +  + + +   +   D
Sbjct: 109 APSLFDEGSRAQQTIVSIAQTLQSKAIAVLEGVVGSAVSLVNVMVLFVIVPVVAVYLLLD 168

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +  ++D L         + ++  + KV+ S   GM  + +  G     A  + G+  
Sbjct: 169 WDRMVARIDELLPRDHAPTIRHLAGRIDKVLASFIRGMGTVCLILGTYYAVALMVVGLNF 228

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLR 297
            +A+G I  ++  IP    +   A++I L +    G+ ++   +     I   +    L 
Sbjct: 229 GLAVGFIAGLVTFIPYLGALIGGALAIGLALFQFWGDWWSIGMVAGVFVIGQVVEGNFLT 288

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           P LVG  + L  +     L       G +G+ I   + A + VI +  +    +++
Sbjct: 289 PKLVGNSVGLHPVWLLLALSVFGALFGFVGMLIAVPVAAALGVIARFLVEQYLDSR 344


>gi|319901043|ref|YP_004160771.1| hypothetical protein Bache_1175 [Bacteroides helcogenes P 36-108]
 gi|319416074|gb|ADV43185.1| protein of unknown function UPF0118 [Bacteroides helcogenes P
           36-108]
          Length = 374

 Score = 70.6 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 61/343 (17%), Positives = 122/343 (35%), Gaps = 17/343 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L     P   A +I +  +P+ + F  K +  +  +++   +  +        +L    M
Sbjct: 31  LSSVLLPFFIAWLIAYLIYPLVTFFQYKLKLKNRIISIFCALFTLLAIGGTAFYLLVPPM 90

Query: 87  LE----MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
           ++    +K+L ++      +   VPR LS+        +   + L     L  + ET  K
Sbjct: 91  IQEFGRVKDLFTEYFSNGIYNSNVPRTLSEFLKENIDMQFLNQLLKEENLLDAIKETLPK 150

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 +    S    +   +    + ++  +F    D  SIS+    L    +  +   
Sbjct: 151 ------LWSLLSESVNLLFSFFTFFLILLYIVFILL-DYESISEGWTHLVPQKYRPFVVG 203

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   V   +   F G   +A+  G++    + +   P  + LG+   I+ M+P    I F
Sbjct: 204 LLNDVKDGMNKYFRGQAFVALCVGILFSIGFLIIDFPLAIGLGLFIGILNMVPYLQVIGF 263

Query: 263 TAVSIYLLI----KGNIFNATC--LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
               +  ++     G  F           AI   I D  + P ++G    L        L
Sbjct: 264 IPTIVLAIVKAADTGGNFWIIIASATAVFAIVQAIQDGFIVPRVMGKITGLNPAIILLSL 323

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                 MG+LG+ I   L  L+   ++  I+  +   E  +S+
Sbjct: 324 SVWGSLMGMLGMIIALPLTTLMLSYYQRFIINRENISEAKTSD 366


>gi|289434703|ref|YP_003464575.1| hypothetical protein lse_1338 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170947|emb|CBH27489.1| membrane protein, putative [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 344

 Score = 70.6 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/357 (12%), Positives = 109/357 (30%), Gaps = 25/357 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  + + R+ +  ++   LY L+     +L   I  +    + +  + +       + ++
Sbjct: 8   LQNKSVKRFGVFLLLAFVLYLLRSQMNIILLTFIFSYLITRLENFILRRISIYRQIIVLL 67

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V +  + ++  +        ++ +LV+                               
Sbjct: 68  LYVVIATVIVLVFVKYIPVLGDQVNQLVNFANKFFTT---------------------DS 106

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +      +  L+  F      +        +        +++   ++   FF      + 
Sbjct: 107 NNDFINYIINLANQFDIMKYTEQGVTMLLTYLTNVGTVLMNVFIALMLSLFFSLGKDHLV 166

Query: 186 QQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              +          +++                    IIA+   ++   A W+ G P  +
Sbjct: 167 SFTNQFSTSKIGFIYEEAKFFGSKFVGTFGKVIEAQFIIALVNAILTTIALWILGFPQLM 226

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L ++  ++ +IP  G  IS   ++I     G +     + +   I   +    L P L+
Sbjct: 227 TLSIMVFLLGLIPVAGVIISLVPLTIIGYSIGGVEYIFYILIVVMIIHALESYVLNPKLM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                LP   TF  L+ G    G+ GL +G  ++     +   +     E     S 
Sbjct: 287 SAKTNLPVFYTFIILIFGEHFFGIWGLIVGIPVVMFFLDVLGVTGQEEIEQPNNNSH 343


>gi|225075831|ref|ZP_03719030.1| hypothetical protein NEIFLAOT_00847 [Neisseria flavescens
           NRL30031/H210]
 gi|224952777|gb|EEG33986.1| hypothetical protein NEIFLAOT_00847 [Neisseria flavescens
           NRL30031/H210]
          Length = 356

 Score = 70.6 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 60/337 (17%), Positives = 124/337 (36%), Gaps = 10/337 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I+   ++   +  LY L     P + A ++ +   P+       K       ++I     
Sbjct: 13  IIMACVVAAFIWFLYALGDVLTPFIVAAVLAYVLNPLVEWL-QLKRIRRAPASMIIMALA 71

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           + + +  +L +    + +   L  ++  +       +  WL+ I G     +        
Sbjct: 72  LLILLSLVLIIVPMLLNQFNNLAERLPQIVGFVQNKLLPWLNSISG-----DYIQIDQES 126

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             +        L      +IP    + G   +    +++ + + L++F  D    S  + 
Sbjct: 127 IIAWLQSHTDELSNTLKAWIPTLMRQSG-NVISGVSNLVLLPLLLYYFLLDWKRWSSGIS 185

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L    F   + +IS  + +V+     G  ++ +  GLV G    L G+ S  A+G+I  
Sbjct: 186 KLVPRRFIETYTRISGNMDEVLGEFLRGQLMVMMIMGLVYGLGLMLVGLDSGFAIGMIAG 245

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGGPIKL 307
           I+  IP     +   ++    +         L +W    +  F+    + P +VG  I L
Sbjct: 246 ILVFIPYLGAFTGLLLATVAALLQYGSWQGLLMVWAVFGVGQFLESFFITPKIVGDRIGL 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                 F L+   + MG +G+  G  L A+  V+ +E
Sbjct: 306 SPFWVIFSLMAFGQLMGFVGMLAGLPLAAVTLVLLRE 342


>gi|229172646|ref|ZP_04300205.1| UPF0118 membrane protein [Bacillus cereus MM3]
 gi|228611117|gb|EEK68380.1| UPF0118 membrane protein [Bacillus cereus MM3]
          Length = 337

 Score = 70.6 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 56/341 (16%), Positives = 122/341 (35%), Gaps = 25/341 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +G  R++++ I+ + LY LK     +L   I+ F           K + +   +    
Sbjct: 9   RSRGFQRFLVLIIVALVLYGLKSMINLILITFILTFLMDRFQRFISKKLKVNRKIVIACL 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++      L        +++ +L+ +  L  Q+           P      +     
Sbjct: 69  YIILVTFIGATLYKYLPVLTIQISQLIYQFRLFFQN-----------PPDNEIIKYALST 117

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           ++  +  K + +      G+D I +  +  G + L   LS+I  +  L     +   I  
Sbjct: 118 INGMEVSKYIEQ------GVDVIYQSIANIGKVSLQILLSLILSLFFL----LEKERIIS 167

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 +     ++++I+    +  RS         +IA+   ++   A  + G P  + 
Sbjct: 168 FTSKFKDSNLKVFYEEITYFGERFARSFGKVIEAQFLIAVVNCVLTVIALVILGFPQLLV 227

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L V+  ++ +IP  G  IS   + I     G +     + ++  +   +    L P  + 
Sbjct: 228 LAVMVFLLGLIPVAGVIISLFPLCIIAYNVGGVMYVVYILVFITVIHALESYFLNPKFMS 287

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               LP   TF  L+     +G+ GL IG  +   +  +  
Sbjct: 288 AKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLD 328


>gi|210631055|ref|ZP_03296736.1| hypothetical protein COLSTE_00621 [Collinsella stercoris DSM 13279]
 gi|210160194|gb|EEA91165.1| hypothetical protein COLSTE_00621 [Collinsella stercoris DSM 13279]
          Length = 379

 Score = 70.6 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/348 (12%), Positives = 115/348 (33%), Gaps = 14/348 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE----ESSTFLAVIATVSV 70
           +++  +  ++         +  A ++      +                     I   S+
Sbjct: 28  VVLGALSAAVDIFFPVLLGLGFAFVLNVPVSGMERLLHRAVGLVPEGRRPGEGAITMASI 87

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD------IPGGMWASELWT 124
           + + I           + + EL++               + +      +     A     
Sbjct: 88  VLVLIAIAGVAVLGVTMLVPELIASARTVAPLLAERLPEIEESLVANGVDVEKLAQFFQG 147

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
              S   +        L   G+  I           +    S +F  +   +      ++
Sbjct: 148 AGASSATAAAGSGAQGLLNLGLGSIASSVFAAARSTVSVLSSSVFAFVIAVYVLASKRTL 207

Query: 185 SQQLDSLGE-HLFPAYWKKISR---IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
            +Q++ + + HL P +  +I     +          G  + A   G ++  A+ L  +P 
Sbjct: 208 GRQVNRVMDAHLAPGHAARIRHVASLATDTYSKFLSGQCLEACILGTLIFLAFSLFRLPY 267

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              +G +TA+ A +P     +  A+  +L +  +  +A    +      FI ++ + P +
Sbjct: 268 AGLIGFLTALFAFVPYVGAFASCAIGAFLTLLASPEHAPLCVIVYLAVQFIENQFIYPHV 327

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           VG  + L  L T    + G +  G++G+     ++A++  ++++   A
Sbjct: 328 VGSSVGLSALWTLIAALVGGKLFGIVGIVFFIPIVAVLYELFRQWTNA 375


>gi|170766882|ref|ZP_02901335.1| putative membrane protein [Escherichia albertii TW07627]
 gi|170124320|gb|EDS93251.1| putative membrane protein [Escherichia albertii TW07627]
          Length = 349

 Score = 70.6 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/321 (14%), Positives = 115/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +          IA   V
Sbjct: 14  LLKLASLVVILAGIHAAADIIVQLLLALFFAIILNPLVNWFIRRGVRRP-----IAITIV 68

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E +S +   NQ        L +I   +             
Sbjct: 69  VVVMLIALTALVGVLAASFNEFISMLPKFNQELTRKLFKLQEILPFL------------- 115

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++  
Sbjct: 116 -NLHMSPEKLLQRMDSEKLVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKM-R 173

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+  +
Sbjct: 174 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGVIVWLGLALMGVQFALMWAVLAFL 232

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA +S     I +L+   ++    +     +   ++   L P ++G  + +  
Sbjct: 233 LNYVPNIGAVLSAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMST 292

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           L  F  L+     +G +G+ +
Sbjct: 293 LVVFLSLLIWGWLLGPVGMLL 313


>gi|317125541|ref|YP_004099653.1| hypothetical protein Intca_2419 [Intrasporangium calvum DSM 43043]
 gi|315589629|gb|ADU48926.1| protein of unknown function UPF0118 [Intrasporangium calvum DSM
           43043]
          Length = 427

 Score = 70.6 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 90/285 (31%), Gaps = 11/285 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
              ++ +L +     P+      +          I  + ++ +F +  + +      E  
Sbjct: 116 ITLLVVSLFLTLALNPLVEGLTRQ-NMRRGLAVTIVFLGLLGVFTLLGMVVVPPVASEGT 174

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           +L              PR L D+    W  ++  ++    +  + ++      N    I 
Sbjct: 175 DLADNA----------PRMLDDLLRQPWVQDVDHRYQVVQRIQEEINHRIADGNLWAGIF 224

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                 G I      SI+ +++   +F     S+ Q   +L        +  ++  + + 
Sbjct: 225 GGVLGAGRIIAAGVFSILTVLVLTLYFLASLPSVKQAGYALVPASRRPRFISLAEEIMRR 284

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S  +G   +A            L  +P    L V   ++ +IP        +V   + 
Sbjct: 285 VGSYAIGQVAVAATNAFFAWIMMSLLDLPFAAVLAVAVGLLGLIPMIGATLGASVVALVA 344

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                  A  + ++  I   + +  + P ++   + +P   T   
Sbjct: 345 FFDEPKKALVVIIYFVIYQQLENYAVMPRIMQRTVAVPGALTVVA 389


>gi|170759215|ref|YP_001787883.1| hypothetical protein CLK_1950 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406204|gb|ACA54615.1| putative membrane protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 342

 Score = 70.6 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/319 (14%), Positives = 119/319 (37%), Gaps = 13/319 (4%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            ++   +    + +I +   PI++ F+  K  +  F A++  V+++ +  V ++ +    
Sbjct: 31  IVRDILSLFFISFVIYYVLKPIHT-FLKHKGINEKFSALLLVVTLIMIIGVFIISIIPAI 89

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + E   + S V    +       ++  I   +               +    E +  + G
Sbjct: 90  IKEGYNITSSVGYIQK-------YIDYIYNKINLLNNNKILGGILNKVNGKIENYTVSIG 142

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + + +F   FG   LDY +    + I +++F   G  I Q+   +         K +  
Sbjct: 143 ENILNKFVG-FGENILDYAV----IPIIVYYFLAAGDKIIQKFFIIFPVKIRGMVKNVLE 197

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K++    +   I+ +   ++        G+   + L +I     +IP   P+  +  
Sbjct: 198 DIDKILARYIISQIILCLIITILTFLVLIGLGIKLPILLSLINGFFNIIPYFGPVIGSLP 257

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +I +    +   A    +       I    L P + G  + +  L     L+ G +  G 
Sbjct: 258 AILIAFTKSPKTALWALILLYFIQQIEGDILSPKITGDSVDMHPLTVILLLLIGGKIYGF 317

Query: 326 LGLFIGPVLMALIAVIWKE 344
           +G+ +   +  ++ +I+++
Sbjct: 318 VGMILAIPIGVIMKIIYED 336


>gi|146293482|ref|YP_001183906.1| hypothetical protein Sputcn32_2386 [Shewanella putrefaciens CN-32]
 gi|145565172|gb|ABP76107.1| protein of unknown function UPF0118 [Shewanella putrefaciens CN-32]
          Length = 368

 Score = 70.6 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 49/328 (14%), Positives = 107/328 (32%), Gaps = 23/328 (7%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
            + IIL  +        P + +  I     P        +     +LAVI  +  + L  
Sbjct: 19  FVVIILAGIKAASPIVVPFVLSSFIAMICNPAIGLMTKYRV--PKWLAVILLMCFIVLMG 76

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + L  +    + E  + + +                           W  H     ++ I
Sbjct: 77  LWLASVVGSSINEFSKQLPQYRDQLIEQFS-----------------WIIHKLQALNIHI 119

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
             +  L            +       +   ++  +++ + F   +  S+ ++L  L    
Sbjct: 120 SKDQVLAYFDPGMALSMTTNMLSGVGNVMANLFLIVLTIVFMLFEAQSLPKKL-HLALDD 178

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                ++I R +  V +   L   ++++  GL++G      GV   +   VI  +   IP
Sbjct: 179 PDMRLQQIDRFLQSVNQYMVLKT-LVSLATGLIVGIGLTFIGVDYALLWAVIAFLFNYIP 237

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G+ I+     +   I+     A    L       ++   + P  +G  + L  L  F 
Sbjct: 238 NIGSIIAAIPAVLLAFIQLGPTAAGGTALLYIGANMVMGNVIEPKFMGRGLGLSTLVVFL 297

Query: 315 GLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            L+     +G +G+ +  P+ M +   +
Sbjct: 298 SLIFWGWLLGSVGMLLSVPLTMVVKIAL 325


>gi|307151710|ref|YP_003887094.1| hypothetical protein Cyan7822_1833 [Cyanothece sp. PCC 7822]
 gi|306981938|gb|ADN13819.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7822]
          Length = 362

 Score = 70.6 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 108/335 (32%), Gaps = 22/335 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             II+  +            A +I     P+    I K+     +LA++ T+ ++    +
Sbjct: 20  FVIIVAGMQAAASILNSFFLASLIAIAITPLLHWLIRKRL--PGWLALLMTILIVICAGL 77

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L+      + E+  +             +P + + I     AS+          S  + 
Sbjct: 78  FLVAFLGISISELIHI-------------LPTYEAKIQALKDASKATLAARGIDTSQLLS 124

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            E F     I  +  F            L    ++  + F   +    S+++        
Sbjct: 125 LEIFSPARIIGTVAGFLRTITEALSTSLL----LVFLIAFMLIEASGFSEKIQRNITSSG 180

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
               +       + IR+            G+V        G+      GV+  ++  IP 
Sbjct: 181 VLLAR--FNAFNRDIRNYVFITAWTGALTGVVDFFILLFLGIDLAALWGVLFFLLNFIPA 238

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G  ++     +  L++  I  A  +F +  +   IVDK ++P  +   + L  L     
Sbjct: 239 VGFILAVLPPMLLALLEFGIEKALLVFFFCWLIDNIVDKGIKPRYMQQGLDLSPLIIILS 298

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++     +G +G  +   L  ++  +  ES    +
Sbjct: 299 VIFWSWVLGGMGAILAVPLTLMVKKVILESSEDTR 333


>gi|296190529|ref|XP_002743228.1| PREDICTED: transmembrane protein C9orf5-like [Callithrix jacchus]
          Length = 880

 Score = 70.6 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 9/190 (4%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDG---FSISQQLDSLGEHLFPAYWKKIS-RIVPKVIR 212
           G   L++ LS+I  +  LF+        +   + + SL     P     I  + V + IR
Sbjct: 650 GTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIR 709

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI 271
             F     +A   GL     + + G+        + AI+  +P  G   +     + L +
Sbjct: 710 GVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWL 769

Query: 272 KGNIF-NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +   A  L ++  +  + VD  +   + GG        T   + GG   +GL G  I
Sbjct: 770 TQGLGCKAILLLIFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAII 826

Query: 331 GPVLMALIAV 340
           GP+L+ ++ V
Sbjct: 827 GPILLCILVV 836


>gi|323524830|ref|YP_004226983.1| hypothetical protein BC1001_0461 [Burkholderia sp. CCGE1001]
 gi|323381832|gb|ADX53923.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1001]
          Length = 358

 Score = 70.6 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 54/351 (15%), Positives = 133/351 (37%), Gaps = 9/351 (2%)

Query: 5   MLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
               +    W+ + + + + L+ L     P L   I+ +   P  +  + ++   +    
Sbjct: 9   TPVQRRAFIWLAIALGVGILLWLLSPVLTPFLLGAILAYILQPGVAWLVRRRVPRALAAL 68

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++  +  + + ++ +L +F     E  +L  +V +   H     +    + G   + +  
Sbjct: 69  LMMLLFTLLMTLL-VLLVFAVIQKEGPQLRQQVPVLFAHINAWLQPKLALLGLADSLDFA 127

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
           +        L+  ++T  +      +       G + +    ++I + + LF+   D   
Sbjct: 128 SVRDLVMGQLEGSAQTVARYAWTSIVTS-----GNVMMTVIGNLILVPLVLFYLLYDWNR 182

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +  ++    +     +++R + +++     G  ++     +    A  LAG    + 
Sbjct: 183 MLLRAQAVVPRRWLVKTLQLARDMDQMLSQYLRGQLLVMGVLAVFYAVALTLAGFEIALP 242

Query: 244 LGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +G+ T +   IP  G A     A+   LL  GN +    + +   +   +    L P LV
Sbjct: 243 VGIFTGLAVFIPYVGFATGLALALLAALLQFGNWYGFGAVAVIYGVGQIVESFFLTPRLV 302

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           G  I L  L   F L+   +  G  G+ +   + A+++V  +E   +  E+
Sbjct: 303 GERIGLHPLAVIFALLAFGQLFGFFGVLLALPVSAILSVAVRELRQSYLES 353


>gi|238927813|ref|ZP_04659573.1| possible permease [Selenomonas flueggei ATCC 43531]
 gi|238884360|gb|EEQ47998.1| possible permease [Selenomonas flueggei ATCC 43531]
          Length = 342

 Score = 70.6 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 51/341 (14%), Positives = 119/341 (34%), Gaps = 18/341 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I+  ++   +L S +F + F   V  +L++     P+  +   ++       A      
Sbjct: 9   SIILAIVFAALLSSFWFFQDFAFIVFLSLLLQLLLQPVVDAMEQRRIPRGIASA------ 62

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
                           +  +  LV   VL+      + R+++++P      +        
Sbjct: 63  ------------GAILLFLLLVLVLLSVLSRSVVPSLQRFVTELPSIGQGLQQMPLLTEM 110

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
               ++ S      +    + R +  F +  +   +  + +I   F+  +DG +I + L 
Sbjct: 111 DLQQEMESFLDKLRSVGAELLRASLSFLLAAVGKIMDFVIIIFVSFYLLKDGKTIKRWLA 170

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L  +        +   +   +R       ++ I  GL++   + L G+P      +++ 
Sbjct: 171 GLFPYGSRGRVLNLFDRLLHALRIYVCSQLVMCIITGLIVFLYFVLMGLPYGSVFALLSG 230

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I   +P   P + +A+   +             L+      I    + P LVG  + L  
Sbjct: 231 ISEFVPVLGPTAASALGTIMTASAAHDLTVQTALFYLALTQINHNIVYPALVGKSLHLHP 290

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +    G+V G   +G  G+F+    M ++ ++  +     K
Sbjct: 291 VAVILGVVFGGEILGAAGMFLAVPFMVIVKIVVTDIYHEQK 331


>gi|322434917|ref|YP_004217129.1| protein of unknown function UPF0118 [Acidobacterium sp. MP5ACTX9]
 gi|321162644|gb|ADW68349.1| protein of unknown function UPF0118 [Acidobacterium sp. MP5ACTX9]
          Length = 360

 Score = 70.6 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/340 (13%), Positives = 111/340 (32%), Gaps = 13/340 (3%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I+ +  M ++ V  Y L      +  A +      P+      +   S      +A + +
Sbjct: 34  IVFFFAMILLFVLGYKLLKELEILYVAALFAVVLMPMVIWITERSIRSYKPSRPVAIILL 93

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +   +V L   F   +  +                +  +L+D+P  +  +    K L   
Sbjct: 94  LLSAVVFLGLFFTIAVPPVLT-------------DLRNFLADLPARIPGAVAHLKKLPLA 140

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
             + +                +       +L +   ++  +    +F  +G        S
Sbjct: 141 DKIGVDQIAAKAEAVAGATGSYIFSALPNWLSHVFDLLTALFLCIYFMLEGEHAYNFFLS 200

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +             +     +     G  ++ +  G+     + +  V   + LGV+  +
Sbjct: 201 IVPLNSRRRLDVTLKKAELKMSKWLFGQGLLMLILGVTSTIVFGVLHVRYFILLGVLMGL 260

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + +IP    +    ++  +    +      +F++ AI   I +  L P ++   + L  L
Sbjct: 261 LNIIPIAGGVVTILLAAGVAALDSWTKMAGVFIFYAIYANIENAFLTPRIMKSSVDLMGL 320

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
                L+ G    G++G  +     ALIAV+ +E  +   
Sbjct: 321 TVLVALLLGTALAGIVGALVAVPTAALIAVLLEEYAVQRP 360


>gi|293347382|ref|XP_001059736.2| PREDICTED: hypothetical protein [Rattus norvegicus]
 gi|293359269|ref|XP_216388.4| PREDICTED: hypothetical protein [Rattus norvegicus]
          Length = 880

 Score = 70.6 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 9/190 (4%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDG---FSISQQLDSLGEHLFPAYWKKIS-RIVPKVIR 212
           G   L++ LS+I  +  LF+        +   + + SL     P     I  + V + IR
Sbjct: 650 GTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIR 709

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI 271
             F     +A   GL     + + G+        + AI+  +P  G   +     + L +
Sbjct: 710 GVFDASLKMAGFYGLYTWLTHTVFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWL 769

Query: 272 KGNIF-NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +   A  L ++  +  + VD  +   + GG        T   + GG   +GL G  I
Sbjct: 770 TQGLGCKAVLLLVFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAII 826

Query: 331 GPVLMALIAV 340
           GP+L+ ++ V
Sbjct: 827 GPILLCILVV 836


>gi|170718389|ref|YP_001783612.1| hypothetical protein HSM_0261 [Haemophilus somnus 2336]
 gi|168826518|gb|ACA31889.1| protein of unknown function UPF0118 [Haemophilus somnus 2336]
          Length = 350

 Score = 70.6 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 114/335 (34%), Gaps = 19/335 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q ++    + +IL  +        P L +L I     P+ +    +K     +LA+    
Sbjct: 10  QVLVACAAIIVILGGIKLASEIVVPFLLSLFIAIICSPVVNFMTKRKIPH--WLAITLLF 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ +    L  L    + E  + + +                 +      ++L      
Sbjct: 68  VLIVVLFYFLASLISNTVQEFTQSIPQYK---------------VLLSQRLNDLLAFAHH 112

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               L   +++         I +F SRF + F +   +I  + + + F   +  ++ Q+ 
Sbjct: 113 FNIPLFFSTDSINDDFDPSIIMKFVSRFLLSFSNVVTNIFVLFLIVVFMLAEAPTVKQKF 172

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L         +     + + +       TI ++  GL +     +  +   +    + 
Sbjct: 173 TKLIVTENTVTQQNYIERILQGVIGYLGVKTITSVMTGLCIYFVLSVLDIQYAILWATLV 232

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++  IP  G+ I+   V +   +         + +   +   +V   L P ++G  + L
Sbjct: 233 FLLNYIPNIGSIIAAVPVIVQSFLLNGFITGLVVSIAFILINTVVGNVLEPKMMGRKLGL 292

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
             L  F  L+     +G +G+ +  P+ M L   +
Sbjct: 293 STLIVFLSLLFWGWLLGTVGMLLSVPLTMGLKIAL 327


>gi|254302758|ref|ZP_04970116.1| possible MFS superfamily major facilitator transporter macrolide
           symporter [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148322950|gb|EDK88200.1| possible MFS superfamily major facilitator transporter macrolide
           symporter [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 363

 Score = 70.6 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 48/329 (14%), Positives = 124/329 (37%), Gaps = 8/329 (2%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +F  V+ ++ I     PI      K + +      ++   V+ +F++  L +    +  +
Sbjct: 39  YFMTVIMSIFIAILLEPIAKYLKKKSKINDILAISLSITLVVLVFVILSLMIIPEIVSSI 98

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           KEL       ++  + + + + D    +   +++T  ++   S          T   D +
Sbjct: 99  KELNGIYPYLSEKAMAIGKKVVD---YLAKKDIYTIDINKIDSYFTNFIKNNITGIQDIV 155

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP----AYWKKISR 205
               S      + +  ++    +  F    D   + + L+++   +F      Y  K  +
Sbjct: 156 STIISGLIDWTIGFT-NLFLAFVLAFLILLDKKHLIKTLENIIIIIFGVKNTPYVIKKLK 214

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
           +   +  S   G  I++   GL +     + G P      ++  +  MIP    I    +
Sbjct: 215 LSKDIFLSYVSGKLIVSAIVGLCVYIILLITGTPYAALSAILLGVGNMIPYVGSIIGGII 274

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           + +L++         L +   I   +    + P ++G  + L        ++      GL
Sbjct: 275 AFFLILLVAPIKTIILLIAIIISQLVDGFIVGPKIIGDKVGLNTFWVMVSMIIFGNLFGL 334

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKE 354
           +G+F+G  ++++I + + + + A +  ++
Sbjct: 335 VGMFLGTPILSIIRLFYIDLLKAKQGGEQ 363


>gi|25325134|pir||C91169 hypothetical protein ECs4323 [imported] - Escherichia coli  (strain
           O157:H7, substrain RIMD 0509952)
 gi|13363797|dbj|BAB37746.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|209755908|gb|ACI76266.1| hypothetical protein ECs4323 [Escherichia coli]
 gi|209755910|gb|ACI76267.1| hypothetical protein ECs4323 [Escherichia coli]
 gi|209755912|gb|ACI76268.1| hypothetical protein ECs4323 [Escherichia coli]
 gi|209755914|gb|ACI76269.1| hypothetical protein ECs4323 [Escherichia coli]
 gi|209755916|gb|ACI76270.1| hypothetical protein ECs4323 [Escherichia coli]
          Length = 376

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/321 (13%), Positives = 114/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +       +A   V
Sbjct: 41  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITIV 95

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E +S +   N+                       + +   
Sbjct: 96  VVVMLIALTALVGVLAASFNEFISMLPKFNKELT--------------RKLFKLQEMLPF 141

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++  
Sbjct: 142 LNLHMSPERMLQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKM-R 200

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+  +
Sbjct: 201 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGVIVWLGLELMGVQFALMWAVLAFL 259

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA IS     I +L+   ++    +     +   ++   L P ++G  + +  
Sbjct: 260 LNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMST 319

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 320 MVVFLSLLIWGWLLGPVGMLL 340


>gi|226314195|ref|YP_002774091.1| hypothetical protein BBR47_46100 [Brevibacillus brevis NBRC 100599]
 gi|226097145|dbj|BAH45587.1| conserved hypothetical membrane protein [Brevibacillus brevis NBRC
           100599]
          Length = 353

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 51/358 (14%), Positives = 106/358 (29%), Gaps = 33/358 (9%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE----SSTF 61
           L    + R+ I+ +  + LY L      VL   ++ +    ++        +        
Sbjct: 8   LQKPDVRRFGILALFCLLLYSLGSMLNMVLLTFLVTYLMNRLHQYLTRVTHKVVPIHPKL 67

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           + +   + +    +V  +      + +  +L   +                         
Sbjct: 68  ILIFLYMLLTFFLVVGGMKAIPALIHQTGQLFHSIEEVY--------------------- 106

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
               H +          + +    +  I + +  F  +  +   ++   II   FF    
Sbjct: 107 ----HQNQNNEFAPYLMSVVGKLDMKGIVQGSLDFLAVVRNVGFNVFLAIILSLFFLLGK 162

Query: 182 FSIS---QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            ++     Q  +             S+              +IA+          W+ G 
Sbjct: 163 DNVVTFTAQFRTSKLSWLYNEIAYFSQKFILTFGKVIETQLLIALFNTTFTVIGLWIMGF 222

Query: 239 PSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P+ + L ++  I+ +IP  G  IS   +S      G I     L ++  +   +    L 
Sbjct: 223 PNLLGLAIMVFILGLIPVAGVAISLIPLSAIAFSVGGIPTVVYLLIFIMVVHALEAYVLN 282

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           P L+     LP   TF  L+      G+ GL +G      +  I +   M     K K
Sbjct: 283 PRLMATKTHLPIFYTFIVLIFSEHFFGVWGLIVGIPSFVFLLDILEVKKMEQPPTKNK 340


>gi|319947927|ref|ZP_08022109.1| hypothetical protein ES5_01331 [Dietzia cinnamea P4]
 gi|319438416|gb|EFV93354.1| hypothetical protein ES5_01331 [Dietzia cinnamea P4]
          Length = 363

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 49/316 (15%), Positives = 107/316 (33%), Gaps = 17/316 (5%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
            AP+  A+++     P+      +   ++  L V+  V  +      +L        ++ 
Sbjct: 51  IAPLAIAVLLAAMLRPMVDRIPERVPRAAAALVVVVGVLAV------ILAALAAVTTQLA 104

Query: 91  ELVSKVVLANQHGIPVP-RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             V ++      G     RWL D P  + A  L          ++  SE          +
Sbjct: 105 TGVPRMRDQISSGTDAALRWLEDGPLHLTADRLQEAVAQARTWIESNSEA---------V 155

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
              A +FG   +D    ++  +++LFFF   G  + +            +     R    
Sbjct: 156 AAGAVQFGHTAVDAVAGVLICLVSLFFFLYHGEKLWEFFVRWLPRASREHVDTAFRGGWG 215

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIY 268
            + +       +A      +G    L  VP  + + V+  + + +P  G  ++    ++ 
Sbjct: 216 SLGAYTRTQLTVAAINAAGVGLGALLLRVPFVIPIVVVVFLASFVPIVGTLVAGVIPTVL 275

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
            L++     A  +     +   +    L+P L+G  + L  L     +  G    G++G 
Sbjct: 276 ALVERGPAIAVAMLAIVVVVHQVESHVLQPLLMGHAVALHPLAVILVVTAGTYLFGVVGA 335

Query: 329 FIGPVLMALIAVIWKE 344
                + A+   + + 
Sbjct: 336 LFAVPVTAMANTVVRH 351


>gi|149195244|ref|ZP_01872333.1| hypothetical protein CMTB2_00079 [Caminibacter mediatlanticus TB-2]
 gi|149134586|gb|EDM23073.1| hypothetical protein CMTB2_00079 [Caminibacter mediatlanticus TB-2]
          Length = 335

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 76/170 (44%), Gaps = 13/170 (7%)

Query: 186 QQLDSLGEHLFPAYWKKISRIV---PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           +++    + + P   +K+ ++     +V+   F    + A  EG++ G    L G+    
Sbjct: 159 REILEYFKKVIPLENEKLEKLFFNTSEVMSVVFYSTLLTAFLEGVLFGFIVSLYGLDF-F 217

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLF-LWGAIELFIVDKTLRPFL 300
              ++ A  ++IP  G  + +  VS++L   GNI  A  +      +   I D  ++PF+
Sbjct: 218 FFSIMYAFASLIPIVGGIMMWGPVSLFLYANGNIQGAIVVAIYSIIVISIIADTFIKPFI 277

Query: 301 VG-------GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +           +L  +  FF +V G+ + GL G+ IGP + +L   I +
Sbjct: 278 IDFVKKIVESDTELNSMLIFFSIVAGLSSFGLWGIIIGPAITSLFISILQ 327


>gi|320103229|ref|YP_004178820.1| hypothetical protein Isop_1687 [Isosphaera pallida ATCC 43644]
 gi|319750511|gb|ADV62271.1| protein of unknown function UPF0118 [Isosphaera pallida ATCC 43644]
          Length = 376

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/330 (13%), Positives = 117/330 (35%), Gaps = 21/330 (6%)

Query: 17  MFIILVSLYFLKGFFAPV---LSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           + +++ S+Y L+ F   +   ++A+ + +   PI      K     T+LA+  T+S + L
Sbjct: 47  LIVLVASVYLLREFAGLIQQIVTAVFLTYLLNPIRQWLTDK--GLPTWLAITVTLSGLGL 104

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            I+ L  +   G+ ++   + + +      +        +PG +              ++
Sbjct: 105 TILMLAAVLQVGLADLSTKMPQYLGILNDKLQRWSESERLPGAIR---------EGLAAM 155

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                  L+ N    + R A   G   +   + ++  +I   F   +   + +++D    
Sbjct: 156 LADDRPLLERNLG--LVRSALETGFKLVSNAVVVVIYLI---FLMAESGGLRRRIDEAMT 210

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
               +  +++   + + +       T ++   G+          +   +  G++   +  
Sbjct: 211 PERASETRRVLSEINQAVSGYLWVKTFVSAIVGVATTLTAHWYQLDDPLVWGMLAFFLNF 270

Query: 254 IPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           +P    +        + L+       A  + L   +   +V   + P L G  + L    
Sbjct: 271 VPYLGSLVAIVLPTMLALIKFDTTGPAIQIALILFVVHNVVGYVVEPILTGRRLDLSPSL 330

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
               L       G +G+ +   LM++I +I
Sbjct: 331 VIISLGFWAWVWGPVGMVLAVPLMSVIKII 360


>gi|225166062|ref|ZP_03727803.1| protein of unknown function UPF0118 [Opitutaceae bacterium TAV2]
 gi|224799696|gb|EEG18184.1| protein of unknown function UPF0118 [Opitutaceae bacterium TAV2]
          Length = 419

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 54/362 (14%), Positives = 124/362 (34%), Gaps = 17/362 (4%)

Query: 15  MIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           ++  + +   + ++ F     P+  A I+     P+     S+         V      +
Sbjct: 52  LLAGVGITLSFVVRHFSSVLWPLAVAGILALILRPVVEFLESRLRFRRPIAVVALYAVFV 111

Query: 72  CLFIVPLLFLFYYGMLEMKELVS-----KVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            L    LL +    + ++ E +S                 P+WL  +   M  ++     
Sbjct: 112 LLVAAGLLVIIPPVVKQLIEFLSALPGLWEKAVAYVQEHSPQWLGMVHDKMANAKFQEIV 171

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGM-IFLDYCLSIIFMIIALFFFYRDGFSIS 185
            +    +K  +   + +         ++  G+  F  +   +  + I LFFF       +
Sbjct: 172 QNLVSHVKTAAAEAVPSVESVVPSLKSAGIGVLGFFGFVTHLAIVPIYLFFFLLSRREPT 231

Query: 186 QQLDSLGEHLFPAYWKKISRIVP---KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           + L S    L P     +  ++     +I S F G  +I +  G++L   + + G+   +
Sbjct: 232 RGLGSQLPFLKPGVRDDVVFLINEFIAIIISFFRGQLLIGLIMGVLLALGFSIIGLKFGL 291

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLI----KGNIFNATCLFLWGAIELFIVDKTLRP 298
            +G+   I+ ++P    I   +V++ L +     G +     + +   +   I    L P
Sbjct: 292 FIGLALGILNIVPYLGTILGLSVALPLALLQPDGGGVQLLVLVLVVFCVVQMIEGWFLTP 351

Query: 299 FLVGGPIKLPFLPTFFGLVG-GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
            ++G    L  +     +   G     +LG+ +   L A     W+   +      +   
Sbjct: 352 KIMGDRTGLHPVAIIVAIFFWGTALDSILGMVLAIPLTAFFVTAWRLLKLKYLHRDDHDY 411

Query: 358 SN 359
            +
Sbjct: 412 HD 413


>gi|118443099|ref|YP_878142.1| hypothetical protein NT01CX_2069 [Clostridium novyi NT]
 gi|118133555|gb|ABK60599.1| hypothetical protein NT01CX_2069 [Clostridium novyi NT]
          Length = 367

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 48/341 (14%), Positives = 108/341 (31%), Gaps = 9/341 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
            I+ I+   +  L  F      A  I +   PI      + + +     V   + VM L 
Sbjct: 31  FILKILGDIINILTPFIL----AFTIAYVLNPIMKFIEKRLKFNRGTSIVCTYILVMSLI 86

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            V  + +         +++  +    Q         S IP  +  S      L +     
Sbjct: 87  TVFSITIIPKVFNSGIDMIDNIPEFAQKMYSWTS--SHIPSKLIGSG---SILRNNSGKW 141

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           I   + + +  I  +           +++   +I  I  L+   +     ++ +  L + 
Sbjct: 142 IEKLSIMSSEWISLLLSTIVSTTTSLINFLFGLIISIYMLYDKEKFQDIATKLVYILLKE 201

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                +    + V  ++ +      I +   G++      +   P  + L +I  I  MI
Sbjct: 202 NKGNKFISFIKTVHTMVGTYIGIKAIDSFIIGIICFIGLMIFKTPYVLILSIIVMITNMI 261

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P   P       + + I  +   A  + ++  +        L P LV   + +       
Sbjct: 262 PYFGPFMGMIPPVVINIFYDPKRAIGILVFLILLQQFDAWILEPKLVSTSVGVSPFLVIL 321

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G+       G++G+ +   +MA++ +   +         E 
Sbjct: 322 GITIFGSVFGVIGMLLASPIMAVLNIYLGKWFRKKVNQYEN 362


>gi|31791383|ref|NP_853876.1| transmembrane protein [Mycobacterium bovis AF2122/97]
 gi|121636117|ref|YP_976340.1| putative transmembrane protein [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224988590|ref|YP_002643277.1| putative transmembrane protein [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|31616968|emb|CAD93075.1| PROBABLE CONSERVED TRANSMEMBRANE PROTEIN [Mycobacterium bovis
           AF2122/97]
 gi|121491764|emb|CAL70226.1| Probable conserved transmembrane protein [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|224771703|dbj|BAH24509.1| putative transmembrane protein [Mycobacterium bovis BCG str. Tokyo
           172]
          Length = 367

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 57/330 (17%), Positives = 112/330 (33%), Gaps = 19/330 (5%)

Query: 14  WMIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +I+  ++  L+ L  F     PVL AL++     P      S+          +  +S 
Sbjct: 25  LVILAAMVALLWVLNKFEVIVVPVLLALMLSALLVPPVDWLDSR-GLPRAVAVTLVLLSG 83

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             +    L F+    +  +  LV++V  +        RWL + P  +   ++     +  
Sbjct: 84  FAVLGGILTFVVSQFIAGLPHLVTEVERSIDSAR---RWLIEGPAHLRGEQIDNAGNAAI 140

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           ++L+              +   A        +   + + ++  L FF   G SI Q +  
Sbjct: 141 EALRNNQAK---------LTSGALSTAATITELVTAAVLVLFTLIFFLYGGRSIWQYVTK 191

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                     +   R     +        ++A+ +   +G+   + GVP  + L  +   
Sbjct: 192 AFPASVRDRVRAAGRAGYASLIGYARATFLVALTDAAGVGAGLAVMGVPLALPLASLVFF 251

Query: 251 MAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            A IP    +   F AV + LL KG I  A            +    L+P ++G  + + 
Sbjct: 252 GAFIPLIGAVVAGFLAVVVALLAKG-IGYALITVGLLIAVNQLEAHLLQPLVMGRAVSIH 310

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
            L     +  G    G++G  +     A  
Sbjct: 311 PLAVVLAIAAGGVLAGVVGALLAVPTAAFF 340


>gi|218675706|gb|AAI69219.2| hypothetical protein LOC23731 isoform 1 [synthetic construct]
          Length = 391

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 9/190 (4%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDG---FSISQQLDSLGEHLFPAYWKKIS-RIVPKVIR 212
           G   L++ LS+I  +  LF+        +   + + SL     P     I  + V + IR
Sbjct: 161 GTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIR 220

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI 271
             F     +A   GL     + + G+        + AI+  +P  G   +     + L +
Sbjct: 221 GVFDASLKMAGFYGLYTWLTHTMFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWL 280

Query: 272 KGNIF-NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +   A  L ++  +  + VD  +   + GG        T   + GG   +GL G  I
Sbjct: 281 TQGLGCKAILLLIFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAII 337

Query: 331 GPVLMALIAV 340
           GP+L+ ++ V
Sbjct: 338 GPILLCILVV 347


>gi|254422589|ref|ZP_05036307.1| conserved domain protein, putative [Synechococcus sp. PCC 7335]
 gi|196190078|gb|EDX85042.1| conserved domain protein, putative [Synechococcus sp. PCC 7335]
          Length = 360

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 57/338 (16%), Positives = 120/338 (35%), Gaps = 11/338 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
              ++++   + +     +  + A ++ F    +  S I K   + ++  +I  +  + L
Sbjct: 22  IFNLWLLFKGVQYFHSLLSIFVVAALLAFLLDYL-VSLIQKTGCARSYSVLIIVLLALSL 80

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            ++  + +    + ++ EL +++      G      L          +L +        L
Sbjct: 81  IVLISMTVVPTLLDQLTELTTQLPGWLASGSQQLELLDT-----EIDKLESADNIDISDL 135

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                  L    +  +P     F + F D    I+   +   +    G    Q L     
Sbjct: 136 TNQLTDLLPVE-LKLLPGQLVSFLLGFTDKLFDIVLTTVLTLYLLLYGKPFWQGLYKWLP 194

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           +      +++S  +     + F G  +IA   G+ L   +++  VP  +  G+   +   
Sbjct: 195 N---DLGEQLSAALSVQFENYFFGQAVIAALMGVTLALVFYILQVPFWLVSGLGIGVCVF 251

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP G  +    VS+ L+  G+    T +     I   ++D    P ++G  + L  +   
Sbjct: 252 IPFGDWLGMATVSL-LVGIGDPLLGTEVLAACIITDQVIDNVFTPRILGDAVGLNPVWVL 310

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             L+ G +  GLLG  I   L A    I     +A  E
Sbjct: 311 LSLLVGAQVDGLLGAVIAVPLAATFKQIVDSFGIADLE 348


>gi|310640698|ref|YP_003945456.1| protein [Paenibacillus polymyxa SC2]
 gi|309245648|gb|ADO55215.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
          Length = 361

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 103/283 (36%), Gaps = 9/283 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P++ +  + +   PI      +K + S       ++ ++ L I  LLFLF +G+    
Sbjct: 42  IVPLMLSFFLYYLLRPIVDVMERRKIKRS------ISILLIYLVIGVLLFLFSWGVW--P 93

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L  +V    ++   + + L D       ++   + L   +         L       + 
Sbjct: 94  TLRDQVTNLFENAPKLIKSLVDQLSQWRHNQSLRQVLPPGEDPLSQLSDTLNEAFST-LS 152

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
            ++ +       + + +    I L++  ++G     ++ +     +     ++   +   
Sbjct: 153 DYSVKLVSFVSYFFIVLATFPILLYYMLKEGSKFGPKMLNFFPKKYHKDALEVMEDIDSA 212

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S  +   +I +  GL++   + + G+P  + L VI+  +  IP    ++ +   + + 
Sbjct: 213 LSSFIVSRVLINVALGLMMFLGFLIIGLPYALLLAVISIFLNFIPYVGAVAASIPVVIIG 272

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
              +   A    +   +   I D  L P + G  + +  L   
Sbjct: 273 FLESPSMALWSLVVVIVAQQIQDNWLSPIVFGKQLDIHPLTVV 315


>gi|77360222|ref|YP_339797.1| integral membrane transport protein [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76875133|emb|CAI86354.1| conserved protein of unknown function ; putative integral membrane
           transport protein [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 325

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 50/301 (16%), Positives = 101/301 (33%), Gaps = 22/301 (7%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P + A  I     P+   F   +      +AVI  V ++    V L  L    + +  
Sbjct: 12  IIPFILAAFIAIICSPLIKFFARYRI--PKGIAVIFVVLIIVGLGVSLGGLVGQSVNDFS 69

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
                            + L      +    +W   ++   ++ I  +  L       + 
Sbjct: 70  -----------------QQLPQFKVKLKEEFVWLVDIASQYNILINKDQILSMFDPGKMV 112

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
             A+           ++  +I+ + F   +G S++ ++ S      P    K        
Sbjct: 113 DVATNMLTGLGGVMANMFLIILTVVFMLFEGPSLNHKIHSALND--PDKKMKQINRFLDS 170

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
           I S     T++++G G++  S  W   V   V  GV+  +   IP  G+ I+     +  
Sbjct: 171 INSYLAIKTLVSLGTGILAASLLWFLDVDYFVLWGVLAFMFNYIPNIGSIIAAVPAVLLA 230

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           LI      A  +     +   ++   + P  +G  + L  L  F  L+     +G +G+ 
Sbjct: 231 LITQGPLVAGLVGAGYLVINTVMGNIVEPKFLGKGLGLSTLVVFLSLIFWGWLLGSVGML 290

Query: 330 I 330
           +
Sbjct: 291 L 291


>gi|146279175|ref|YP_001169333.1| hypothetical protein Rsph17025_3144 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557416|gb|ABP72028.1| hypothetical protein Rsph17025_3144 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 393

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/336 (13%), Positives = 119/336 (35%), Gaps = 14/336 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++ ++++ ++++ LYF +    P++  L+I  T  P+  S              +   
Sbjct: 40  RRLLGFILLVLVIMGLYFARDVILPLMIGLLIALTFSPVVRSL-----HRIGIAPPVTAT 94

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +++      +    +     + + +S+            + L      +  +      L+
Sbjct: 95  ALIVSLAAVIGIGAFILSGPVSDWISQAPRLGDQLRERAQTLLASFEAVQNASEQVSELA 154

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      +    ++T GI       S           + I  ++   F    G     +L
Sbjct: 155 NDAEDPTVQRVAVQTPGI------LSSAVGSVASVLTTTIVTLVLALFLLASGDLFYIKL 208

Query: 189 DSLGEHLFPA-YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                         +I   + + +    L +TII  G G+V+G A W AG+PS +   + 
Sbjct: 209 IEAFPRFGDKKRALRIVYGIERRVSRYLLSVTIINAGLGVVIGLAMWGAGMPSPIIWAIG 268

Query: 248 TAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
             ++  +P    I     + ++ ++   ++  A  +         I  + + P ++G  +
Sbjct: 269 AFLLNFLPYIGAISGVALSAAVAIVHYDHLSQAFLVPALYLAATAIEGQLVTPIVLGRRL 328

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +L  +  F  ++      G+ G  I    +  + V+
Sbjct: 329 ELNTVSVFVTVIFWGWLWGVPGALIAVPFLVCLKVV 364


>gi|254557801|ref|YP_003064218.1| transport protein [Lactobacillus plantarum JDM1]
 gi|254046728|gb|ACT63521.1| transport protein [Lactobacillus plantarum JDM1]
          Length = 348

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 53/333 (15%), Positives = 115/333 (34%), Gaps = 17/333 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           ++GF   VL   I  +    +      +         ++  V V+ LFI  L +     +
Sbjct: 29  MRGFATVVLLTTIFAYLGIKLSRWLNLRTHLPYWIAVIVVYVGVIALFIGALSYAAPTLV 88

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++K +   +  A          +++ P      + W     H   L    +  L T GI
Sbjct: 89  DQLKVIPDMLAKA----------ITNHPVLNKNIDKWVNQAIHSSELIQNGKALLVT-GI 137

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +    + F  + +   LS IF +            +  +      +++      ++  
Sbjct: 138 KGLSEVGTGFTHVLMAIFLSFIFAVSRGRMMVFGRQFLQSKFKKFFTNVY-----YLTHK 192

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAV 265
              ++        +I     +++   + + G+PS + L +I  I+ ++P  G  IS   +
Sbjct: 193 FVMILGRIIETQLVICTINTILMTIGFMIIGMPSIMVLSIIVFILGLVPVAGVLISMIPL 252

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++     G +     + +   +        L P L+     LP   TF  L+     +G 
Sbjct: 253 TLLGFASGGLIRVVWIIVLVILIHAFESYFLHPRLMADRTDLPVFVTFITLIIMESLLGA 312

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            GL IG  +++    I+       +    +I+ 
Sbjct: 313 WGLIIGIPIVSFFLDIFGVQNSEPRRVTSQIAK 345


>gi|260905376|ref|ZP_05913698.1| AI-E2 family membrane protein [Brevibacterium linens BL2]
          Length = 356

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 95/282 (33%), Gaps = 8/282 (2%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           PI    + ++   S        +SV+ + +  L  +    +L    ++S++         
Sbjct: 57  PIVLWLVERRLPRS--------LSVVLVVLAFLAIVAGAVLLIAPAVISQIQQFIGDLPD 108

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           +   L+         + +T  +   +    L E       +  +       G   + +  
Sbjct: 109 IVASLAATGWVADLEQRFTGAVDLDKIFANLGEWASDPKNVVSLGGGVVSIGAGIISFLA 168

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
            ++ ++I   +F     +I   + SL         + ++  V + I    LG   + I  
Sbjct: 169 GVVIVVILTIYFAVTMPTIKSAMLSLVAASSRPTVESVTEEVTRSIGRYVLGQVSLGIVN 228

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           G+       + G P    L  I  + ++IP   PI+   +     +  +      + ++ 
Sbjct: 229 GVCSAIFLTIIGAPLPALLAFIAFLASLIPLVGPITGAIIITGSCLMVSPGLGIAVGIYY 288

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            + + +    L P ++   + +P        + G    G+LG
Sbjct: 289 LVYMQVEAYLLSPRIMKTAVNVPGALVIIAAIAGGTLGGVLG 330


>gi|326575175|gb|EGE25103.1| hypothetical protein E9W_04228 [Moraxella catarrhalis CO72]
          Length = 415

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 59/343 (17%), Positives = 127/343 (37%), Gaps = 9/343 (2%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPI--YSSFISKKEESSTF 61
           T      I   + + ++L+S Y+L   +  V +++++      +  Y + I    +    
Sbjct: 3   TQEQKSFIFMMVAVVLMLLSFYYLIHVWLIVFASILMAVWLLSLVEYLTLIPWVGQYLKK 62

Query: 62  LA--VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
           L   ++ T+ +M L  V       +G     +L +  +L  Q    + ++L+       A
Sbjct: 63  LPHGILLTMVLMGLVGVLSTLAALFGHELALQLENLKLLVPQAFEYMNQYLTQYLQTHPA 122

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              W   L   + L+   + FL       +    +  G +       ++  II LF    
Sbjct: 123 VYEWLAGLEWARELRDNPQQFLTRFSDGAMAYLPTYLGGMVSGMGTLVVITIIGLF-LAI 181

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
                 +   ++         + +     + ++   LG  ++    G+  G A WL G+P
Sbjct: 182 SPSVYRRSFVAMVPKDSRDKAEYLLDRSYRSMQQWLLGQLVVMAFVGIATGIALWLMGIP 241

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF--IVDKTLR 297
             +ALG I  ++  +P   P  + +    LL+   +     L++   I +   +    + 
Sbjct: 242 FALALGFIAFLLDFVPVLGP--WLSAIPILLLTLIVSPKMLLWVALMIVVVQQLESYVIS 299

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           P +    + LP +      V      G+LG+ +   LM ++ V
Sbjct: 300 PIVQNRMVDLPPVALLLSQVIMGSITGILGIALATPLMVMVIV 342


>gi|300916791|ref|ZP_07133498.1| conserved hypothetical protein [Escherichia coli MS 115-1]
 gi|300415940|gb|EFJ99250.1| conserved hypothetical protein [Escherichia coli MS 115-1]
          Length = 376

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 114/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +       +A   V
Sbjct: 41  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITIV 95

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E +S +   N+                       + +   
Sbjct: 96  VVVMLIALTALVGVLAASFNEFISMLPKFNKELT--------------RKLFKLQEMLPF 141

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++  
Sbjct: 142 LNLHMSPERMLQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMR- 200

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+  +
Sbjct: 201 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGVIVWLGLELMGVQFALMWAVLAFL 259

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA IS     I +L+   I+    +     +   ++   L P ++G  + +  
Sbjct: 260 LNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGMST 319

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 320 MVVFLSLLIWGWLLGPVGMLL 340


>gi|225872604|ref|YP_002754059.1| hypothetical protein ACP_0952 [Acidobacterium capsulatum ATCC
           51196]
 gi|225791289|gb|ACO31379.1| putative membrane protein [Acidobacterium capsulatum ATCC 51196]
          Length = 359

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 91/283 (32%), Gaps = 15/283 (5%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI-VPLLFLFYYGMLEMKELVSKV 96
            +I     P+  + +  +         ++ V ++     +  +F  +      ++L   V
Sbjct: 45  ALIAVVLTPLARAIMRLRIGKWHPGLGLSVVLLIAAVAGLISVFALFALPPAFRDLREFV 104

Query: 97  VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
               Q    +   L  +P         ++  +  Q       TFL  +  D+        
Sbjct: 105 TELPQRAPELLTRLKHVPLMQRIDV--SQLNARIQDFAGNFATFLLKSAKDWA------- 155

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
                    ++   I+   +F  DG    Q    L      A   +        +    L
Sbjct: 156 -----HVVFAVGMGILLTVYFMIDGSRAYQWGMKLVPVEHRARLDRTLTRAEARMGRWLL 210

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIF 276
           G  ++ +  G+     + +  V    ALGV+  +  +IP    +   ++++ +    +  
Sbjct: 211 GQAMLMLILGVCSTVVFVILHVRYAYALGVLMGLFNIIPVVGAMITVSLALVVAALDSWG 270

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
               + ++ AI   +    L P ++   + LP L     L+ G
Sbjct: 271 RVLGVLVFYAIYAQLETSVLTPRIMQSSVNLPGLAILIALLIG 313


>gi|215425410|ref|ZP_03423329.1| putative transmembrane protein [Mycobacterium tuberculosis T92]
 gi|219556003|ref|ZP_03535079.1| putative transmembrane protein [Mycobacterium tuberculosis T17]
 gi|260185070|ref|ZP_05762544.1| putative transmembrane protein [Mycobacterium tuberculosis CPHL_A]
 gi|260199207|ref|ZP_05766698.1| putative transmembrane protein [Mycobacterium tuberculosis T46]
 gi|260203350|ref|ZP_05770841.1| putative transmembrane protein [Mycobacterium tuberculosis K85]
 gi|289441581|ref|ZP_06431325.1| conserved membrane protein [Mycobacterium tuberculosis T46]
 gi|289445737|ref|ZP_06435481.1| conserved membrane protein [Mycobacterium tuberculosis CPHL_A]
 gi|289568108|ref|ZP_06448335.1| conserved membrane protein [Mycobacterium tuberculosis T17]
 gi|289572785|ref|ZP_06453012.1| transmembrane protein [Mycobacterium tuberculosis K85]
 gi|289748681|ref|ZP_06508059.1| conserved membrane protein [Mycobacterium tuberculosis T92]
 gi|289414500|gb|EFD11740.1| conserved membrane protein [Mycobacterium tuberculosis T46]
 gi|289418695|gb|EFD15896.1| conserved membrane protein [Mycobacterium tuberculosis CPHL_A]
 gi|289537216|gb|EFD41794.1| transmembrane protein [Mycobacterium tuberculosis K85]
 gi|289541861|gb|EFD45510.1| conserved membrane protein [Mycobacterium tuberculosis T17]
 gi|289689268|gb|EFD56697.1| conserved membrane protein [Mycobacterium tuberculosis T92]
          Length = 367

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 57/330 (17%), Positives = 113/330 (34%), Gaps = 19/330 (5%)

Query: 14  WMIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +I+  ++  L+ L  F     PVL AL++     P      S+          +  +S 
Sbjct: 25  LVILAAMVALLWVLNKFEVIVVPVLLALMLSALLVPPVDWLDSR-GLPRAVAVTLVLLSG 83

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             +    L F+    +  +  LV++V  +        RWL + P  +   ++     +  
Sbjct: 84  FAVLGGILTFVVSQFIAGLPHLVTEVERSIDSAR---RWLIEGPAHLRGEQIDNAGNAAI 140

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           ++L+              +   A        +   + + ++  L FF   G SI Q +  
Sbjct: 141 EALRNNQAK---------LTSGALSTAATITELVTAAVLVLFTLIFFLYGGRSIWQYVTK 191

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                     +   R     +        ++A+ +   +G+   + GVP  + L  +   
Sbjct: 192 AFPASVRDRVRAAGRAGYASLIGYARATFLVALTDAAGVGAGLAVMGVPLALPLASLVFF 251

Query: 251 MAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            A IP    +   F AV + LL KG I  A            +    L+P ++G  + + 
Sbjct: 252 GAFIPLIGAVVAGFLAVVVALLAKG-IGYALITVGLLIAVNQLEAHLLQPLVMGRAVSIH 310

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
            L     +  G    G++G  +    +A  
Sbjct: 311 PLAVVLAIAAGGVLAGVVGALLAVPTVAFF 340


>gi|148381571|ref|YP_001256112.1| sporulation integral membrane protein YtvI [Clostridium botulinum A
           str. ATCC 3502]
 gi|153932794|ref|YP_001385948.1| sporulation integral membrane protein YtvI [Clostridium botulinum A
           str. ATCC 19397]
 gi|153934624|ref|YP_001389355.1| sporulation integral membrane protein YtvI [Clostridium botulinum A
           str. Hall]
 gi|148291055|emb|CAL85192.1| putative membrane protein [Clostridium botulinum A str. ATCC 3502]
 gi|152928838|gb|ABS34338.1| sporulation integral membrane protein YtvI [Clostridium botulinum A
           str. ATCC 19397]
 gi|152930538|gb|ABS36037.1| sporulation integral membrane protein YtvI [Clostridium botulinum A
           str. Hall]
          Length = 351

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/333 (14%), Positives = 117/333 (35%), Gaps = 26/333 (7%)

Query: 15  MIMFIILVSLYFL-----KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           +I+F I+ ++ FL       +  P + A +         +  I K +  ++  + I T+ 
Sbjct: 11  LILFFIIYTISFLIFFKTLPYTLPFVLAFLFALVLKKPANYLIKKLKIKNSLASFIVTLI 70

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              + I  L +     + E+ +                          +   ++  +L+ 
Sbjct: 71  FFSIIITLLFWGINLLVNEVIDFGRNAQAYLYSHEGE--------ISNYVDNIYRYYLNL 122

Query: 130 PQSLKILSETFLKTN---GIDFIPRFASRFGMIFLDYCLS-------IIFMIIALFFFYR 179
           P S+    E  +  +     + I    S+    F+    S       I+F +++ +FF +
Sbjct: 123 PPSIIDSIEKTIGNSFSKISNIIVFITSKIVSSFIGLLTSVPYILMLILFTLLSTYFFTK 182

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D    + ++  +  +   + +  I     K++    L    +           +++  + 
Sbjct: 183 DITKHNNKISKIIFNEHSSKFSHIYLESKKMLNGYILSYLTLIGITFFETLIIFFIFNIK 242

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
             +   +  AI   +P  G    +  ++ IY+L+  N      L +     +  + + L 
Sbjct: 243 YSIMFSITAAIADFLPILGIGTIYVPLALIYILVYKNYVVGIGLLI-SYAAVSTIRQILE 301

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           P L+   + L  +     +  G++  G+ G+F 
Sbjct: 302 PKLLSSSLGLHPISILAAIFIGLKANGISGMFF 334


>gi|73542459|ref|YP_296979.1| hypothetical protein Reut_A2774 [Ralstonia eutropha JMP134]
 gi|72119872|gb|AAZ62135.1| Protein of unknown function UPF0118 [Ralstonia eutropha JMP134]
          Length = 356

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 57/348 (16%), Positives = 124/348 (35%), Gaps = 17/348 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M   +LN +   R ++   +   L+     L     P L A I  +   P       ++ 
Sbjct: 1   MNAPLLNDET-KRVLLWIAVAAGLFAAIIALAPILTPFLLAFIFAYILTPGVDWMARRRV 59

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
             +        ++V  + ++ ++      +L +  L  ++    +    + + L+ +   
Sbjct: 60  PRA--------IAVAVMILLLVVVCVVLVLLLIAVLQREIPQVREQLPMLLKKLNAVVAP 111

Query: 117 MWASELWTKHLSHPQSLKILSETFLKT--NGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
             A          P    +LS+ F  +  + +  +  +A   G   L+       + I +
Sbjct: 112 RLADFGVRVRFDFPGLRSMLSDRFSASPEDLLAMLLNYAKVSGSALLEVAGMAFVIPIVM 171

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           F+   D   + ++++ L    +    ++++     ++     G  ++ +    +      
Sbjct: 172 FYLMMDWHMVMRRIEGLVPRRWVPKVRELTAETDVLLSQYLRGQILVMVILASIYSIGLT 231

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           +AG    V +GV T +   IP          A+   LL  G+ +    + +   I  FI 
Sbjct: 232 VAGFDVGVPVGVFTGLAVFIPYIGFGIGLVLAILAALLQFGDWYGLAAVAVVYGIGQFIE 291

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
              L P LVG  I L  L   F L+   +  G  G+ +     A++ V
Sbjct: 292 SFYLTPRLVGERIGLHPLVVIFALLAFGQLFGFFGVLLALPTCAVLLV 339


>gi|113461497|ref|YP_719566.1| permease [Haemophilus somnus 129PT]
 gi|112823540|gb|ABI25629.1| conserved hypothetical protein [Haemophilus somnus 129PT]
          Length = 350

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 114/335 (34%), Gaps = 19/335 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q ++    + +IL  +        P L +L I     P+ +    +K     +LA+    
Sbjct: 10  QVLVACAAIIVILGGIKLASEIVVPFLLSLFIAIICSPVVNFMTKRKIPH--WLAITLLF 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ +    L  L    + E  + + +                 +      ++L      
Sbjct: 68  VLIVVLFYFLASLISNTVQEFTQSIPQYK---------------VLLSQRLNDLLAFAHH 112

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               L   +++         I +F SRF + F +   +I  + + + F   +  ++ Q+ 
Sbjct: 113 FNIPLFFSTDSINDDFDPSIIMKFVSRFLLSFSNVVTNIFVLFLIVVFMLAEAPTVKQKF 172

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L         +     + + +       TI ++  GL +     +  +   +    + 
Sbjct: 173 TKLIVTENTVTQQNYIERILQGVIGYLGVKTITSVMTGLCIYFVLSVLDIQYAILWATLV 232

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++  IP  G+ I+   V +   +         + +   +   +V   L P ++G  + L
Sbjct: 233 FLLNYIPNIGSIIAAVPVIVQSFLLNGFITGLVVSIAFILINTVVGNVLEPKMMGRKLGL 292

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
             L  F  L+     +G +G+ +  P+ M L   +
Sbjct: 293 STLIVFLSLLFWGWLLGTVGMLLSVPLTMGLKIAL 327


>gi|153810088|ref|ZP_01962756.1| hypothetical protein RUMOBE_00469 [Ruminococcus obeum ATCC 29174]
 gi|149834266|gb|EDM89346.1| hypothetical protein RUMOBE_00469 [Ruminococcus obeum ATCC 29174]
          Length = 407

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 48/342 (14%), Positives = 111/342 (32%), Gaps = 17/342 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK---------EESSTFLAVIATVSV 70
           I   +  +     P L   +I +   PI +    +          ++      +   ++V
Sbjct: 10  IAAGIQLVFNILKPFLYGALIAYLLAPICNRMDERFLKWFPKATEKQKKGLKFLSIAIAV 69

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +C   + +L +           V  + +         R +  +       + +  H S  
Sbjct: 70  ICAVTIVVLLILLILPQVWDSTVKIIKILPARLAYCNRMIDQLLKDQPELQTYFNHFSSQ 129

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFG-------MIFLDYCLSIIFMIIALFFFYRDGFS 183
               +       ++ +  I    +           +F +  L  +  +  L      G  
Sbjct: 130 VENGLNDVLKANSSMMTTIQGIVNNITVQLIEVLSVFKNMFLGFLIAVYLLASRKLFGAQ 189

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
               L  +  + +    ++      K+    F+G  I +   GL+  +   L G  S   
Sbjct: 190 AKLLLYGIFSNKWAKIIEEEVHYTDKMFNGFFVGKIIDSAIIGLICFAGTTLLGFESAAF 249

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           + V+  +  +IP  G  I     ++ LL+  N ++A    ++  I   +    + P ++G
Sbjct: 250 ISVVIGVTNIIPFFGPFIGAIPCALLLLLGSNPWDALYFLIFIVILQQVDGNIIGPKILG 309

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
               +      F ++      GL+G+ I   L  +I  I ++
Sbjct: 310 NTTGVSSFWVLFSILLFGGLWGLVGMVIAVPLFGVIYDIIRK 351


>gi|315650584|ref|ZP_07903648.1| permease [Eubacterium saburreum DSM 3986]
 gi|315487148|gb|EFU77466.1| permease [Eubacterium saburreum DSM 3986]
          Length = 367

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 49/327 (14%), Positives = 122/327 (37%), Gaps = 6/327 (1%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  F A  + A II       Y   + KK  +   +  +A V  +  F++ ++ L    +
Sbjct: 40  LMPFVAGAVMAYIINILMD-FYEDLLLKKFHNKKIIRTVAIVLSIFTFVLVIVLLLGLII 98

Query: 87  LEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT-N 144
            ++ +++  ++  N   I  +   +         +++    +++      +++      +
Sbjct: 99  PQLIKIMFSIMYTNPGDIKKIIESIGKNNIVDKIADMMNVDINNIDISGYVTKLIRSVMS 158

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK--- 201
            +  I          F +  +S+   ++   +   D   I+ Q D L     P+      
Sbjct: 159 SVGNILMGVISGISGFFNTIISVFMAVVFAIYILMDKERIAVQGDKLLRAFLPSKRDSVI 218

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            + RI     R+ F+     AI  G++L     +A +P   ++ ++  + A+IP     +
Sbjct: 219 DVLRIFNTSFRNYFISQVKEAIILGVLLYIVMIIARLPYASSISILVGVTALIPVIGAYA 278

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
              +   +++  +  +     +   +     +  + P +VG  + LP +     +  G  
Sbjct: 279 GLFIGTLMILTKSFSSMIIFIIVHTVVQQFENNIIYPRVVGSSVGLPGMWVIVAVALGGS 338

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMA 348
             G+ G+F+   + A +  I K   + 
Sbjct: 339 LGGIFGVFVAVPVAASLYFILKRETLK 365


>gi|226304565|ref|YP_002764523.1| hypothetical protein RER_10760 [Rhodococcus erythropolis PR4]
 gi|226183680|dbj|BAH31784.1| hypothetical membrane protein [Rhodococcus erythropolis PR4]
          Length = 392

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 103/294 (35%), Gaps = 13/294 (4%)

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
            +   ++  ++ + L    + F+    +  + +L  +   +      +  WL+  P    
Sbjct: 74  RSAAVIVVLLASIGLVAGIMTFVVEQFIDGLPQLTDQFTASVT---QIQNWLTSGPLHFS 130

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             ++     S  +S++   E+             A+  G IF    L+    +  L FF 
Sbjct: 131 EDQIRQAGDSVVKSVQSNRESLTSGA-----LTTATVIGEIFTGALLT----LFTLIFFL 181

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
             G  I Q +  +         +         +         +A  + + +G+   + GV
Sbjct: 182 YGGDQIWQFVTRIVPTDARRRVRIAGSAGFGSLIGYVRATVAVAAADAIGIGAGLAILGV 241

Query: 239 PSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P  + L  +  I A IP  GA ++     +  L+      A  +       + +    ++
Sbjct: 242 PLALPLASLVFIGAFIPIVGAFLTGFLAVLVALVTKGFLTALIVLGIIIGVMQLEAHVMQ 301

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           P L+G  ++L  L     +  G+   G++G  +   ++A++    +  +    +
Sbjct: 302 PLLLGRAVRLHPLAVVLAITTGIVLAGIVGGLLAVPIVAVLNTAIRSLLADDPD 355


>gi|269959013|ref|YP_003328802.1| putative permease [Anaplasma centrale str. Israel]
 gi|269848844|gb|ACZ49488.1| putative permease [Anaplasma centrale str. Israel]
          Length = 376

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/343 (12%), Positives = 111/343 (32%), Gaps = 11/343 (3%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL-----AVIATVSVMCLFI 75
            V ++ ++        A ++ +   P+ +   S              + +A  + + + +
Sbjct: 28  AVLVFVMRPVLPLCCVAAVLAYLLNPLVNRLESIGLPRPVSSFAIIFSSVAVFATLLVLL 87

Query: 76  VPLL----FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
           VP+           +++         +              + G M  + L   +L   +
Sbjct: 88  VPVAYSQTLAMAKLLVDKLPFAGVESIKTALQAYDMLRYDGVIGTMNPAALSPNNLFSSE 147

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            ++ +            +     + G+        +   ++ LF+       + +    +
Sbjct: 148 HVEFIKLFDSLYKNFIKVAVRVVQSGVGIGTIAARVFITLLLLFYILGSWPIVVKNALLM 207

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +   +      +  ++ +   G T + +   +     + + G+   + LGVI+ IM
Sbjct: 208 VPRHYLEGFSHCMSRIDSIVSAYIRGQTTVCLIMLIYYCICFAVVGLEYSLVLGVISGIM 267

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--DKTLRPFLVGGPIKLPF 309
             IP   P+   A    L +      A    +     +  V     + P L+   + L  
Sbjct: 268 TFIPYVGPVLCAAFGACLALLQGFSWAGTAAVILVFVVGNVVESNIITPVLLSKKLDLNP 327

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
                G+V      GLLG  +   + A+++V+ + ++   K +
Sbjct: 328 GWVVIGMVVFSAHAGLLGALVSIPVTAIVSVLAQFAVEKYKRS 370


>gi|229084918|ref|ZP_04217171.1| UPF0118 membrane protein [Bacillus cereus Rock3-44]
 gi|228698391|gb|EEL51123.1| UPF0118 membrane protein [Bacillus cereus Rock3-44]
          Length = 362

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 56/341 (16%), Positives = 121/341 (35%), Gaps = 25/341 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +G  R++++ ++ + LY LK     +L   I+ F           K + +   +    
Sbjct: 31  RSRGFQRFLVLILLALVLYGLKSMINLILITFILTFLMDRFQRFISRKIKINRKLIIACL 90

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++   +  L        +++ +L+ +  L  Q+           P            
Sbjct: 91  YIVLVTFIVTTLYKYLPVLTIQISQLIHQFKLFFQN-----------PPDNEVIRYVLST 139

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           ++  +  K + +      G+D I +  +  G + +    S+I  +  L     +   I  
Sbjct: 140 INQMELSKYIEQ------GVDVIYQSVANIGKVSMQILFSLILSLFFL----LEKERIIS 189

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 E     ++++I+    K  RS         +IA+   ++   A    G P  + 
Sbjct: 190 FTSKFKESKLRVFYEEIAYFGQKFARSFGKVIEAQFLIAVVNCILTVIALIFLGFPQLLV 249

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L V+  ++ +IP  G  IS   + I     G I     + ++  +   +    L P  + 
Sbjct: 250 LAVMIFLLGLIPVAGVFISLVPLCIIAYNVGGIAYVVYILIFITVIHALESYFLNPKFMS 309

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               LP   TF  L+     +G+ GL IG  +   +  + +
Sbjct: 310 AKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLE 350


>gi|295836186|ref|ZP_06823119.1| membrane protein [Streptomyces sp. SPB74]
 gi|295825895|gb|EDY42221.2| membrane protein [Streptomyces sp. SPB74]
          Length = 411

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 48/359 (13%), Positives = 121/359 (33%), Gaps = 18/359 (5%)

Query: 2   RETMLNPQGIMRWMIMFIIL----VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           R     P+ ++  +++         + + L G    VL A  +     P  S   ++   
Sbjct: 37  RMPRWLPRAMVSALLLIACFQLGTWAFHRLTGLLINVLIAFFLALAIEPAVSWMSAR-GM 95

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                  I  + V+      +  L      +++ +V       ++   V +W++    G 
Sbjct: 96  RRGAATGIVFLGVLIFAAGFVTLLGSMLAGQIQNMVEDFP---KYLDSVIKWVN----GT 148

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
           + ++L    +          + +++ +    +   A       L     ++ +++  F+F
Sbjct: 149 FHTDLSRLEVQDSVLHSDWLQRYVRNSASGVLDVSAQ-----VLGGLFQLLTLLLFAFYF 203

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             DG  + + L S+      A   +   I             ++A+  G+     +   G
Sbjct: 204 AADGPRLRRALCSVLPPAKQAEVVRAWEIAVDKTGGYLYSRGLMALISGIAHYILFQALG 263

Query: 238 VPSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           +P   ALGV   +++  IP        A+ + +    + + A  + ++  +     +  L
Sbjct: 264 IPYAPALGVWVGLVSQFIPTIGTYLAGALPMLIAFTVDPWYAVWVLVFVVVYQQFENYLL 323

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +P L    + +     F  ++ G   +G +G  I    +A +       +       + 
Sbjct: 324 QPKLTARTVDIHPAVAFGSVIAGTALLGAVGALISIPAVATLQAFLAAYVKRYDVTDDP 382


>gi|119488027|ref|ZP_01621471.1| hypothetical protein L8106_11537 [Lyngbya sp. PCC 8106]
 gi|119455316|gb|EAW36455.1| hypothetical protein L8106_11537 [Lyngbya sp. PCC 8106]
          Length = 357

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 59/324 (18%), Positives = 119/324 (36%), Gaps = 15/324 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            +L+   +L+     VL+A +I F   +PI   F+ ++     F      +  +      
Sbjct: 26  FLLLLFKYLQPVPGIVLTASLIAFLLEYPI--VFLEQRGVPRGFAITGVILLALVFLGFL 83

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +  L      ++ E V+++    + G      L +         L          +    
Sbjct: 84  IFVLSPLVFQQLIEFVNRLPAWIEEGRKQLDTLDE---QTILQYLPMDISDLTAQISGQL 140

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              LK+   + I        +  ++  L++I  ++       +G  +   L S    L  
Sbjct: 141 SRTLKSLTAEII-----DLTLNTINSALNLIVTVVLTILLVLNGEKLWDGLISW---LPG 192

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
            + ++I   + +  R  + G  I+A+   + L  A+ +  +P  +  G     +++IP G
Sbjct: 193 EWSEQIQLTIQQSFRGYYSGQAILALILSIALSFAFLIFQIPFWLLFGFGIGSLSLIPFG 252

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
              +   V   LL   N+F    +     I   I +  + P L+GG   L        L+
Sbjct: 253 GTFAVL-VISTLLALHNVFLGLKVLAIALIIGQINENVIAPRLIGGITGLNPALVIVSLL 311

Query: 318 GGVRTMGLLGLFIGPVLMALIAVI 341
            GV+  G+LGL +     +L+  I
Sbjct: 312 AGVKIAGVLGLLLAVPTASLVKKI 335


>gi|170691340|ref|ZP_02882505.1| protein of unknown function UPF0118 [Burkholderia graminis C4D1M]
 gi|170143545|gb|EDT11708.1| protein of unknown function UPF0118 [Burkholderia graminis C4D1M]
          Length = 358

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 54/343 (15%), Positives = 128/343 (37%), Gaps = 9/343 (2%)

Query: 5   MLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
               +    W+ + + + + L+ L     P L   I+ +   P  +  + ++   +    
Sbjct: 9   TPVQRRAFIWLAIALGVGILLWLLSPVLTPFLLGAILAYILQPGVAWMVRRRVPRALAAL 68

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++  +  + + ++ +L +F     E  +L  +V     H   V  WL   P         
Sbjct: 69  LMMLLFTLLMTLL-VLLVFAVIQKEGPQLRQQVPQLFAH---VNAWLQ--PKLAMLGLAD 122

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
           +   +  + + +            +        G + +    +++ + + LF+   D   
Sbjct: 123 SLDFASVRDMVMGQLEGSAQTVARYAWTSIVTSGNVMMTVVGNLVMVPLVLFYLLYDWNR 182

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  ++ S+    +     +++R + +++     G  ++     +   +A  +AG    + 
Sbjct: 183 MLLRMQSVVPRRWLDKTLQLARDMDQMLSQYLRGQLLVMGVLAVFYAAALSIAGFEIALP 242

Query: 244 LGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +G+ T +   IP  G A     A+   LL  GN +    + L   +   +    L P LV
Sbjct: 243 VGIFTGLAVFIPYIGFATGLALALLAALLQFGNWYGFGAVALIYGVGQIVESFYLTPRLV 302

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           G  I L  L   F L+   +  G  G+ +   + A+++V  +E
Sbjct: 303 GERIGLHPLAVIFALLAFGQLFGFFGVLLALPVSAILSVAMRE 345


>gi|152980582|ref|YP_001353231.1| hypothetical protein mma_1541 [Janthinobacterium sp. Marseille]
 gi|151280659|gb|ABR89069.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 390

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 50/340 (14%), Positives = 117/340 (34%), Gaps = 14/340 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILV-SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M    +N +G+   +I  +  V +L   + FF P+L  + I +T  P+       +    
Sbjct: 30  MIHLPVNARGVALTIIATVAFVFALSVAQAFFIPLLFGIFIAYTLNPLVVWLERIRIPR- 88

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-MW 118
                + T  V+   +    F       E   ++  +  A Q      + L    G  + 
Sbjct: 89  ----WLGTSVVILAIVCSAAFTVNNLRDEFNSILVSLPTATQKLARAVKNLQRGQGSTIQ 144

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI---FLDYCLSIIFMIIALF 175
             +     +    +        +K+     +  F+          + +      ++  +F
Sbjct: 145 QMQAAATEIEKATNQAAGGRPVVKSPVEQSVFNFSQWLWAGSVSVVGFLGQATMVMFLVF 204

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYW--KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           FF + G    ++L  +  H         +I   +   I++    + +  +  GL++  A 
Sbjct: 205 FFLQSGDMFRRKLVKISGHSLHTRKITVQILDAINTSIQNYMFMLLVTNVLFGLLMWGAL 264

Query: 234 WLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFI 291
              G+ +  A  +   I+ +IP  G  +   A  +   ++ G   +   +     +   +
Sbjct: 265 RWIGLENAGAWALAAGILHIIPYFGPLLIMAATGVTAFMQFGTFSSVLAVGGATLLIATV 324

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
           V   +  ++ G   K+  +  F  L+      G+ G+ +G
Sbjct: 325 VGTFVTTWMTGRIAKMNAVAVFVSLLFWAWLWGICGMLLG 364


>gi|120598439|ref|YP_963013.1| hypothetical protein Sputw3181_1622 [Shewanella sp. W3-18-1]
 gi|120558532|gb|ABM24459.1| protein of unknown function UPF0118 [Shewanella sp. W3-18-1]
 gi|319426786|gb|ADV54860.1| autoinducer-2 transport protein, TqsA [Shewanella putrefaciens 200]
          Length = 368

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 49/328 (14%), Positives = 107/328 (32%), Gaps = 23/328 (7%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
            + IIL  +        P + +  I     P        +     +LAVI  +  + L  
Sbjct: 19  FVVIILAGIKAASPIVVPFVLSSFIAMICNPAIGLMTKYRV--PKWLAVILLMCFIVLMG 76

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + L  +    + E  + + +                           W  H     ++ I
Sbjct: 77  LWLASVVGSSINEFSKQLPQYRDQLIEQFS-----------------WIIHKLQALNIHI 119

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
             +  L            +       +   ++  +++ + F   +  S+ ++L  L    
Sbjct: 120 SKDQVLAYFDPGMALSMTTNMLSGVGNVMANLFLIVLTIVFMLFEAQSLPKKL-HLALDD 178

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                ++I R +  V +   L   ++++  GL++G      GV   +   VI  +   IP
Sbjct: 179 PDMRLQQIDRFLQSVNQYMVLKT-LVSLATGLIVGIGLTFIGVDYALLWAVIAFLFNYIP 237

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G+ I+     +   I+     A    L       ++   + P  +G  + L  L  F 
Sbjct: 238 NIGSIIAAIPAVLLAFIQLGPTAAGGTALLYIGANMVMGNVIEPKFMGRGLGLSTLVVFL 297

Query: 315 GLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            L+     +G +G+ +  P+ M +   +
Sbjct: 298 SLIFWGWLLGSVGMLLSVPLTMVVKIAL 325


>gi|301762328|ref|XP_002916585.1| PREDICTED: LOW QUALITY PROTEIN: transmembrane protein C9orf5-like
           [Ailuropoda melanoleuca]
          Length = 883

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 9/190 (4%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDG---FSISQQLDSLGEHLFPAYWKKIS-RIVPKVIR 212
           G   L++ LS+I  +  LF+        +   + + SL     P     I  + V + IR
Sbjct: 653 GTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIR 712

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI 271
             F     +A   GL     + + G+        + AI+  +P  G   +     + L +
Sbjct: 713 GVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWL 772

Query: 272 KGNIF-NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +   A  L ++  +  + VD  +   + GG        T   + GG   +GL G  I
Sbjct: 773 TQGLGCRAILLLVFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAII 829

Query: 331 GPVLMALIAV 340
           GP+L+ ++ V
Sbjct: 830 GPILLCILVV 839


>gi|282900348|ref|ZP_06308299.1| protein of unknown function UPF0118 [Cylindrospermopsis raciborskii
           CS-505]
 gi|281194853|gb|EFA69799.1| protein of unknown function UPF0118 [Cylindrospermopsis raciborskii
           CS-505]
          Length = 376

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 48/313 (15%), Positives = 113/313 (36%), Gaps = 17/313 (5%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
              ++ A ++ F           +       +A++  +  + + +   + LF   + + +
Sbjct: 32  IVILVGASVLAFLLNYPLIWMEKQ-GAKREQVAILVFLIALSILLALGVTLFPLALTQAR 90

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK--TNGIDF 148
           +LV+++          P W+      +       + +  P +L  +         + +  
Sbjct: 91  QLVNRL----------PEWIDSGRSQLMILNEKAEMMGLPINLDAIVVQINDRVKSQLQA 140

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           I        ++ +   L  +  ++  F+  + G  + Q L       F   + +  R+  
Sbjct: 141 ITAQVLNLAVVTVTSLLDFLLTMVLTFYLLQHGGELWQSLVEWLPSKFREPFSRTVRL-- 198

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
              ++ F+   I++      L  ++    VP  +  G+   IMA+IP G      A++  
Sbjct: 199 -SFQNFFITQLILSTCMASALIPSFLWLKVPYGLLFGLTIGIMALIPFGGS-VGIAITTL 256

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L+   +I     +     I   I++  L P ++G    L  +     ++ G R  GLLG+
Sbjct: 257 LVSLQDISMGVRVLAAAVIVQQILENILAPRILGNFTGLNPVWVLISVLTGARVGGLLGV 316

Query: 329 FIGPVLMALIAVI 341
            +      +I  I
Sbjct: 317 IVAVPFAVVIKTI 329


>gi|296125128|ref|YP_003632380.1| hypothetical protein Bmur_0071 [Brachyspira murdochii DSM 12563]
 gi|296016944|gb|ADG70181.1| protein of unknown function UPF0118 [Brachyspira murdochii DSM
           12563]
          Length = 435

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 121/356 (33%), Gaps = 20/356 (5%)

Query: 15  MIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +++ + L +L+ +K      AP +  + I +   P+ +   +K        AV+     +
Sbjct: 74  IVLILALFTLWVIKEAGYLVAPFIWGIFIAYMFDPLITKMQTKI---PRIAAVLFIFIPL 130

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +  V          +E  E++SK +      I     L  I      +    K      
Sbjct: 131 IIIAVIFFVFILPRTIEEMEVISKSLPEYVDKIYNSISLLLISVSDKLNGSIGKSFDIDM 190

Query: 132 SLKILSE-----------TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           ++   S            T +    IDF  +  S    IF       + +    F+   D
Sbjct: 191 AIDAASIKDFLFGSDGIFTLIYKKMIDFRFQNISSLTTIFSVIFSYFVILPFVTFYLMLD 250

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
             +I  ++  +    +     +I +    +I     GMTI+A+   ++      +     
Sbjct: 251 FQNIKSKIIKIIPMRWQTSISEIVKKSNSIINGYVRGMTILALSFFIISYILLSVTNTRY 310

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFN--ATCLFLWGAIELFIVDKTLR 297
              L ++  I+  IP  G   +F    +  +I  NI+   A  + +       +    + 
Sbjct: 311 AFILALLRGILNYIPFIGPFAAFVTALLVGIITENIWWHGALKICIIFGFVQILDSGLMA 370

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           P ++G  +K+  +   F  + G    G LG+        ++ ++ +        +K
Sbjct: 371 PKILGKSVKIHPIAVMFSTIIGGVLFGFLGILFSVPFCGIVLLVVQNFFNKYYHSK 426


>gi|170745511|ref|YP_001766968.1| hypothetical protein Mrad2831_6242 [Methylobacterium radiotolerans
           JCM 2831]
 gi|170659112|gb|ACB28166.1| protein of unknown function UPF0118 [Methylobacterium radiotolerans
           JCM 2831]
          Length = 659

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/351 (12%), Positives = 109/351 (31%), Gaps = 16/351 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G++   +  +++ +LYF +  F P++ A+++ F   P+ +  + K +       ++A +
Sbjct: 23  RGLLTLAVGVVLVAALYFGREVFIPLVLAVLLSFVLGPVVN-LLRKAKLGRVPSVIVAVL 81

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-WL---SDIPGGMWASELWT 124
             + +       +          L        +    + + WL   + I           
Sbjct: 82  LALGVLGGIAAVIGTQVAGLAGNLPQYQATVQRKVAGLQQGWLGEANRILQKFNHQVHDV 141

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIP---------RFASRFGMIFLDYCLSIIFMIIALF 175
              +        +    +T     +            A +     +     +  +++ + 
Sbjct: 142 TQKADAAGTTAATGPAGETPKAQLVRVEQPEPSPFALAEKVLGPIVSPLTDVGIVLVVVV 201

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F       +  ++  L                   + + FL    +    G+++G   W 
Sbjct: 202 FLLLQREDLRNRMIRLFGSSDLHRTTVAMDDAAGRLGTYFLAQLGMNATFGVIVGIGLWF 261

Query: 236 AGVPSHVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
            GVP+ +  GV +AIM  IP    I+     V++   +               +   +  
Sbjct: 262 IGVPNPLLWGVFSAIMRFIPYIGAIASGILPVALAAAVDPGWSMVIATAALFLVAEPLFG 321

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           + + P L G    L         +      G +GL +       + V+ + 
Sbjct: 322 QVIEPLLYGHSTGLSPFAVIVSTLFWGFLWGPIGLILATPFTVCLVVLGRH 372


>gi|108797149|ref|YP_637346.1| hypothetical protein Mmcs_0169 [Mycobacterium sp. MCS]
 gi|119866234|ref|YP_936186.1| hypothetical protein Mkms_0178 [Mycobacterium sp. KMS]
 gi|108767568|gb|ABG06290.1| protein of unknown function UPF0118 [Mycobacterium sp. MCS]
 gi|119692323|gb|ABL89396.1| protein of unknown function UPF0118 [Mycobacterium sp. KMS]
          Length = 381

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/336 (13%), Positives = 114/336 (33%), Gaps = 14/336 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++ +  +  +L  +  L+    PV  A ++     P    F+ ++         +  +
Sbjct: 25  RLLIIFGALVAVLWLVARLEIIVVPVALATMLAALLMPAVD-FLDRRGAPRGGAVALVLL 83

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           S + +    L F+    +  M  L  +V  +        RWL + P  +   ++     +
Sbjct: 84  SGIAVVGGILTFVVSQFVEGMPALGEQVTRSIDGMR---RWLVEGPLDLSREQIDNAGNA 140

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             ++++   E          +   A        +     + ++  L F    G +I   +
Sbjct: 141 AIEAVRNNQER---------LTSGALSTAGTITEIVTGALLVLFTLIFLLHGGRNIFGFI 191

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +         +   R     +        ++A+ + + +G+   +  VP  + L  + 
Sbjct: 192 TKVFPPDVRDRVRGAGRAGFHSLIGYVRATFLVALVDAIGIGTGLAIMSVPLALPLASLV 251

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A +P  GA ++     I  L+   +  A            +    L+P ++G  + +
Sbjct: 252 FLGAFVPLVGAVVTGFLAVIVALLTKGLVYALITLGLILAVQQLEGHVLQPLVMGRAVSI 311

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             L     + GG    G++G  +    +A +    +
Sbjct: 312 HPLAVVLAIAGGGVLAGIVGALLAVPAVAFLNSAIR 347


>gi|74314074|ref|YP_312493.1| hypothetical protein SSON_3712 [Shigella sonnei Ss046]
 gi|73857551|gb|AAZ90258.1| conserved hypothetical protein [Shigella sonnei Ss046]
          Length = 376

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 43/321 (13%), Positives = 114/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +       +A   V
Sbjct: 41  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITIV 95

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E +S +   N+                       + +   
Sbjct: 96  VVVMLIALTALVGVLAASFNEFISMLPKFNKELT--------------RKLFKLQEMLPF 141

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++  
Sbjct: 142 LNLHMSPERMLQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKM-R 200

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+  +
Sbjct: 201 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGVIVWLGLELMGVQFALMWAVLAFL 259

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA IS     I +L+   ++    +     +   ++   L P ++G  + +  
Sbjct: 260 LNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMST 319

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 320 MVVFLSLLIWGWLLGPVGMLL 340


>gi|226303651|ref|YP_002763609.1| hypothetical protein RER_01620 [Rhodococcus erythropolis PR4]
 gi|226182766|dbj|BAH30870.1| hypothetical membrane protein [Rhodococcus erythropolis PR4]
          Length = 382

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 52/318 (16%), Positives = 111/318 (34%), Gaps = 21/318 (6%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
              G   PV  AL++     PI      +      ++ ++ ++  + L ++ L       
Sbjct: 49  VFGGILGPVFLALVLTIAVQPIQDWSQRRGW--PKWVGMLGSLVTVYLILLGLAASLIVS 106

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++  ++ +      + +   R                  L+         ++ L +  
Sbjct: 107 TAQLATILPQYSEEMTNLLNEGR----------------DKLADFGVSTEQIQSTLSSID 150

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +           L     ++F++  L F   DG SI  +L+ L E      +     
Sbjct: 151 LTKVVGVLESGLEGLLGILSDLVFILALLLFMAFDGMSIRSRLNVLSEQRPEISYA--LS 208

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTA 264
                 R   +  T+  +   ++ G A WL G+   V   +++ I   IP  G  I    
Sbjct: 209 TFAAGTRKYLVVSTVFGLIVAVLDGGALWLMGIQLPVLWALLSFITNYIPNIGFVIGVIP 268

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            ++  L++G  +    + +  ++  F++   ++P  VG  + L    TF  LV     +G
Sbjct: 269 PALLGLLQGGPWLMLWVIVVYSVINFVIQSIIQPKFVGDAVGLSVTMTFLSLVFWAWVLG 328

Query: 325 LLGLFIGPVLMALIAVIW 342
            LG  +   L  L+  + 
Sbjct: 329 ALGALLAIPLSLLVKAVL 346


>gi|90407160|ref|ZP_01215348.1| hypothetical protein PCNPT3_03016 [Psychromonas sp. CNPT3]
 gi|90311736|gb|EAS39833.1| hypothetical protein PCNPT3_03016 [Psychromonas sp. CNPT3]
          Length = 360

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 114/331 (34%), Gaps = 26/331 (7%)

Query: 5   MLNPQGIMRWMI----MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M N   + R ++    + I L  +        P L AL I     P  +     +     
Sbjct: 1   MQNVSTLARSLLCCASLVIALAGIKIAAPIVVPFLLALFIAIICNPAVNFLERYRIPR-G 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           F   +    +  LFI     +                  N+    +P + + +   +  +
Sbjct: 60  FAITLIIGFIFFLFIGLGGVIGSSV--------------NEFRQALPSYEAQLSTQLSWA 105

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W        +   +   F     +  +    S F  +  +    I  +++ + F   +
Sbjct: 106 VQWMGEHHIEINKFEIQSYFNPAKVMTLVTATLSGFSSMLGN----IFLLLLTVVFMLVE 161

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G   S++L    +   P   +K  +    ++       T+I++  GL++G   W+  V  
Sbjct: 162 GEGFSKKLHIAFDD--PIGKEKRMQRFLNMVNRYMAIKTLISLATGLIIGFVLWIMNVDF 219

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            V   ++  ++  IP  G+ ++     I   ++  + +A+ +         I+   + P 
Sbjct: 220 FVLWALLVFLLNYIPNIGSILAAVPTVILTFLQLGMGSASIVIGLFVAVNMIMGNMVEPK 279

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            +G  + L  L  F  L+     +G++G+ +
Sbjct: 280 YMGRSLGLSTLVVFLSLIFWGWLLGMVGMLL 310


>gi|114626080|ref|XP_001144114.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
          Length = 879

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 9/190 (4%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDG---FSISQQLDSLGEHLFPAYWKKIS-RIVPKVIR 212
           G   L++ LS+I  +  LF+        +   + + SL     P     I  + V + IR
Sbjct: 649 GTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIR 708

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI 271
             F     +A   GL     + + G+        + AI+  +P  G   +     + L +
Sbjct: 709 GVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWL 768

Query: 272 KGNIF-NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +   A  L ++  +  + VD  +   + GG        T   + GG   +GL G  I
Sbjct: 769 TQGLGCKAILLLIFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAII 825

Query: 331 GPVLMALIAV 340
           GP+L+ ++ V
Sbjct: 826 GPILLCILVV 835


>gi|256820979|ref|YP_003142258.1| hypothetical protein Coch_2153 [Capnocytophaga ochracea DSM 7271]
 gi|256582562|gb|ACU93697.1| protein of unknown function UPF0118 [Capnocytophaga ochracea DSM
           7271]
          Length = 358

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 54/347 (15%), Positives = 118/347 (34%), Gaps = 24/347 (6%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE-ESSTFLAVIATVSVMC 72
            +++ + L +LY L+     ++ +L++     P+   F  K + ++ T   V+  +  + 
Sbjct: 17  IVLVVLGLYTLYLLQSIIIYLIVSLVLTLMGKPLIQFFYKKLKIKNRTLCVVLTMLLFVI 76

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           L +          + + K L S  +   +  +                 L          
Sbjct: 77  LSLGVFSLFIPLLISQGKNLSSLNIDLLKDNLDAL--------------LHQTLSKVGLQ 122

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
            +  S    +      IP F + F      + +    ++   FFF +DG  I   L S+ 
Sbjct: 123 REDYSFGVQEMLNFIDIPNFLNSFISFISSFGVGFFSVLFITFFFMKDGDRILIALLSIF 182

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                   K     +  ++   F+G+ +      ++      + GV +   + ++ A++ 
Sbjct: 183 SPKRKRKLKTSIFKINNLLSRYFVGLMLQLTILFIIYTIVLLIFGVENAFIIALLCALLN 242

Query: 253 MIPGGAPISFTAVSIYLLIKGNI--------FNATCLFLWGAIELFIVDKTL-RPFLVGG 303
           +IP   P+    +   L +  N+           T   L G I    +D    +P +   
Sbjct: 243 LIPYIGPMIGFILMALLTMSSNLQNDFMTVSLPTTIYVLIGFIIGQFIDNFFSQPLIFSN 302

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            +K   L  F   +      G+ G+ +      ++ V+ KE     K
Sbjct: 303 SVKSTALEIFLITLISGTLFGITGMVVAIPAYTVLKVVLKEFFPNNK 349


>gi|269213626|ref|ZP_06158084.1| acetyltransferase, GNAT family [Neisseria cinerea ATCC 14685]
 gi|269146150|gb|EEZ72568.1| acetyltransferase, GNAT family [Neisseria cinerea ATCC 14685]
          Length = 366

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 60/339 (17%), Positives = 123/339 (36%), Gaps = 12/339 (3%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + + +++   + L    AP   A ++ +   P+      KK  +    ++   V  + L 
Sbjct: 27  VFLTVLIWLAFALGDTLAPFAVAAVLAYVLDPLVEWL-QKKGFNRAVASMTVMVFALLLL 85

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
              LL +    + +   +VS++    Q    +   L  +      S +     S    L+
Sbjct: 86  AALLLIIVPMLVGQFNSMVSRLP---QLAGFMQNTLLPLLKDTVGSYVEIDQASVIAWLQ 142

Query: 135 ILSETFLKTNGIDF--IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +     T    F  + R +S       +  L  + +   L     D    S  +  L 
Sbjct: 143 AHTGELSNTLKAWFPVLMRQSSNIVSSIGNLMLLPLLLYYFL----LDWQRWSCGISKLV 198

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
              F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+ 
Sbjct: 199 PRRFADTYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLMLVGLDSGFAIGMVAGILV 258

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGGPIKLPFL 310
            +P     +   ++    +         L +W    +  F+    + P +VG  I L   
Sbjct: 259 FVPYLGAFTGLLLATVAALLQFASWNGILAVWAVFAVGQFLESFFITPKIVGDRIGLSPF 318

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
              F L+   + MG +G+  G  L A+  V+ +E +   
Sbjct: 319 WVIFSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVQKY 357


>gi|254975864|ref|ZP_05272336.1| hypothetical protein CdifQC_11154 [Clostridium difficile QCD-66c26]
 gi|255093251|ref|ZP_05322729.1| hypothetical protein CdifC_11434 [Clostridium difficile CIP 107932]
 gi|255314993|ref|ZP_05356576.1| hypothetical protein CdifQCD-7_11612 [Clostridium difficile
           QCD-76w55]
 gi|255517668|ref|ZP_05385344.1| hypothetical protein CdifQCD-_11201 [Clostridium difficile
           QCD-97b34]
 gi|255650778|ref|ZP_05397680.1| hypothetical protein CdifQCD_11376 [Clostridium difficile
           QCD-37x79]
 gi|260683863|ref|YP_003215148.1| membrane protein [Clostridium difficile CD196]
 gi|260687523|ref|YP_003218657.1| hypothetical protein CDR20291_2171 [Clostridium difficile R20291]
 gi|306520681|ref|ZP_07407028.1| hypothetical protein CdifQ_13206 [Clostridium difficile QCD-32g58]
 gi|260210026|emb|CBA64079.1| conserved membrane protein [Clostridium difficile CD196]
 gi|260213540|emb|CBE05283.1| conserved membrane protein [Clostridium difficile R20291]
          Length = 353

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 122/349 (34%), Gaps = 5/349 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +       I+++  + +I   +Y +  F  P+L   +I F    I    I     ++   
Sbjct: 2   DIQKQKNFIIKFTYVVLITSIVYIVLKFLLPLLMPFVISFIIASILRPIIRLITNNTNLN 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV--VLANQHGIPVPRWLSDIPGGMWAS 120
             + ++ ++ +F    +FL     +++   VS V   L   +   +   L+ +   + AS
Sbjct: 62  RTLISIVILLIFYGLCIFLLVSFGVKIFASVSDVFFRLPEIYKSSIQPTLNTLFSKIDAS 121

Query: 121 EL-WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                  L         S   L  +         +        + L +I  +IA FFF  
Sbjct: 122 TPNVNLSLILGWDNISQSMMSLVASISTNALNAIASIASKTPAFMLKLIITLIASFFFTF 181

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D   I   +              I       +        I+     L L     +  V 
Sbjct: 182 DYQKIVNFILKQFPEKSQFMIINIKNSSINALLKLLKAYAILLSVTFLELLIGLTILKVE 241

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           +   + VI A++ ++P  G     T   I  LI GNI N     L   I + +V + L P
Sbjct: 242 NAFTISVIIALVDILPVLGTGSILTPWMIISLINGNI-NLAIGLLILYIIITVVRQILEP 300

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            +VG  I L  L T   +  G +  G+ GLF  P+   +I  +    I+
Sbjct: 301 KVVGHQIGLYPLITLMCMFIGAQLFGIAGLFGFPIAATIIKNLHDNGII 349


>gi|158423889|ref|YP_001525181.1| putative membrane transport protein [Azorhizobium caulinodans ORS
           571]
 gi|158330778|dbj|BAF88263.1| putative membrane transport protein [Azorhizobium caulinodans ORS
           571]
          Length = 618

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 104/357 (29%), Gaps = 25/357 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             +      + ++    ++  +Y  +  F PV  A+++ F   P+       +       
Sbjct: 12  RPVHRESRTLVFLGALALIAVVYIGREVFVPVALAVLLSFVLSPVLLVLRRLRIPR---- 67

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +    V+ L  + LL L      ++ +L S +     +     R L     G    E 
Sbjct: 68  -TLGVAGVVMLTFIGLLALGAVVATQVGQLASDLPHYQANVRDKIRDLKSTASGSATMER 126

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRF-----------------ASRFGMIFLDYCL 165
               L    S     +   K                               G   L    
Sbjct: 127 VAGMLQDLSSELDRPDPQPKFQLDAAAAAQRPIPVEIRAPELGTLAMLRSLGEPLLHPLA 186

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           +   + I L F       +  +   L                   +    L   ++  G 
Sbjct: 187 TTGIIFIFLIFILLQREDLRNRFIRLAGAHDIQRTTAALDDAGARLSRFLLTQVVLNAGF 246

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL--FL 283
           G V+G    L GVPS +  G++ A++  +P    I    +   L +  +   +  +   +
Sbjct: 247 GCVIGLGLGLIGVPSAMLWGLLAAVLRFVPYIGAIIAALLPSALALAVDPGWSMVVWCIV 306

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIA 339
             A+   +V   + P L G    L  +             G +GL +  P+ + L+ 
Sbjct: 307 LFAVVEPVVGHIIEPLLYGRSTGLSPVAVIASATFWTWLWGPIGLVLATPLTLCLVV 363


>gi|126735141|ref|ZP_01750887.1| hypothetical protein RCCS2_14729 [Roseobacter sp. CCS2]
 gi|126715696|gb|EBA12561.1| hypothetical protein RCCS2_14729 [Roseobacter sp. CCS2]
          Length = 367

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 53/352 (15%), Positives = 117/352 (33%), Gaps = 28/352 (7%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
              LV L+FL     P +    I +   PI                     +V  + IV 
Sbjct: 17  AFFLVVLWFLGDVILPFVLGGAIAYCLDPIADRLEKAGCSR--------MAAVAIITIVT 68

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +L      +L +  LV +          +   L    G          + S      +  
Sbjct: 69  ILIFVLLFLLVIPTLVQQTASLIDTAPELFDRLRT--GLTERFPQLMDNQSVAYQQLLAV 126

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              +++ G + +    S   +  ++  + ++ + +   +   D  +++ ++D +      
Sbjct: 127 GETIQSKGGELVNGLVSS-ALGLINILVLLVIVPVVAVYMLLDWDNMTAKIDDMLPRDHV 185

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
              ++++R +   + S   G   + +  G     A  LAG+   + +G I  ++  IP  
Sbjct: 186 DTIRQLARDIDATLASFIRGQGTVCLVLGTYYAVALMLAGLNFGLIVGFIAGLITFIPYI 245

Query: 258 APISFTAVSIYLLI-----------------KGNIFNATCLFLWGAIELFIVDKTLRPFL 300
             +    +++ L +                   N      +     +  F+    L P L
Sbjct: 246 GALVGGVLAVGLALFQFWGSVEVVDGDTISYTTNWLRIGIVAGIFGLGQFLEGNILTPKL 305

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           VGG + L  +   F L       G +G+ +   + A+I V+ +  +   K +
Sbjct: 306 VGGSVGLHPVWLLFALSVFGTLFGFVGMLVAVPIAAMIGVVARWGLGQYKHS 357


>gi|126699888|ref|YP_001088785.1| hypothetical protein CD2273 [Clostridium difficile 630]
 gi|255101415|ref|ZP_05330392.1| hypothetical protein CdifQCD-6_11449 [Clostridium difficile
           QCD-63q42]
 gi|255307288|ref|ZP_05351459.1| hypothetical protein CdifA_11907 [Clostridium difficile ATCC 43255]
 gi|115251325|emb|CAJ69157.1| putative sporulation integral membrane protein [Clostridium
           difficile]
          Length = 353

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 68/349 (19%), Positives = 122/349 (34%), Gaps = 5/349 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +       I+++  + +I   +Y +  F  P+L   +I F    I    I     ++   
Sbjct: 2   DIQKQKNFIIKFTYVVLITSIVYIVLKFLLPLLMPFVISFIIASILRPIIRLITNNTNLN 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV--VLANQHGIPVPRWLSDIPGGMWAS 120
             + ++ ++ +F    +FL     +++   VS V   L   +   +   L+ +   + AS
Sbjct: 62  RTLISIVILLIFYGLCIFLLVSFGVKIFASVSDVFFRLPEIYKSSIQPTLNTLFSKIDAS 121

Query: 121 EL-WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                  L         S   L  +         +        + L +I  +IA FFF  
Sbjct: 122 TPNVNLALILGWDNISQSMMSLVASISTNALNAIASIASKTPAFMLKLIITLIASFFFTF 181

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D   I   +              I       +        I+     + L     +  V 
Sbjct: 182 DYQKIVNFILKQFPEKSQFMIINIKNSSINALLKLLKAYAILLSVTFIELLIGLTILKVE 241

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           +   + VI A++ ++P  G     T   I  LI GNI N     L   I + +V + L P
Sbjct: 242 NAFTISVIIALVDILPVLGTGSILTPWMIISLINGNI-NLAIGLLILYIIITVVRQILEP 300

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            +VG  I L  L T   +  G +  G+ GLF  P+   +I  +    I+
Sbjct: 301 KVVGHQIGLYPLITLMCMFVGAQLFGIAGLFGFPIAATIIKNLHDNGII 349


>gi|309800351|ref|ZP_07694518.1| membrane protein [Streptococcus infantis SK1302]
 gi|308116023|gb|EFO53532.1| membrane protein [Streptococcus infantis SK1302]
          Length = 205

 Score = 69.9 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 73/198 (36%)

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
           S          +++I M   LF+  RDG  +   +     +       K+   V + + +
Sbjct: 2   SALISGTSQVIVALIIMPFMLFYLLRDGKGLRDHITQFLPNKLREPVGKVLTDVNQQLSN 61

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
              G   +A+   ++    + + G+   V LG+   ++ +IP          ++ L +  
Sbjct: 62  YVRGQITVAVIVAIMFIIFFKIIGLRYAVTLGITAGVLNLIPYLGSFLAMIPALVLGLIA 121

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
                  + +   +E  I  + + P ++G  + +  +   F L+      G+ G+ +G  
Sbjct: 122 GPVMLLKVIIVFIVEQTIEGRFVSPLILGSQLNIHPITILFVLLTSGSMFGVWGVLLGIP 181

Query: 334 LMALIAVIWKESIMAIKE 351
           + A   V+        K+
Sbjct: 182 VYASAKVVISAIFEWYKK 199


>gi|47077828|dbj|BAD18785.1| unnamed protein product [Homo sapiens]
          Length = 431

 Score = 69.9 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 9/190 (4%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDG---FSISQQLDSLGEHLFPAYWKKIS-RIVPKVIR 212
           G   L++ LS+I  +  LF+        +   + + SL     P     I  + V + IR
Sbjct: 201 GTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIR 260

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI 271
             F     +A   GL     + + G+        + AI+  +P  G   +     + L +
Sbjct: 261 GVFDASLKMAGFYGLYTWLTHTMFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWL 320

Query: 272 KGNIF-NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +   A  L ++  +  + VD  +   + GG        T   + GG   +GL G  I
Sbjct: 321 TQGLGCKAILLLIFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAII 377

Query: 331 GPVLMALIAV 340
           GP+L+ ++ V
Sbjct: 378 GPILLCILVV 387


>gi|229029652|ref|ZP_04185728.1| UPF0118 membrane protein [Bacillus cereus AH1271]
 gi|228731656|gb|EEL82562.1| UPF0118 membrane protein [Bacillus cereus AH1271]
          Length = 337

 Score = 69.9 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 57/341 (16%), Positives = 122/341 (35%), Gaps = 25/341 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +G  R++++ I+ + LY LK     +L   I+ F           K + +   +    
Sbjct: 9   RSRGFQRFLVLIIVALVLYGLKSMINLILITFILTFLMDRFQRFISKKLKVNRKIVIACL 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++      L        +++ +L+ +  L  Q+           P      +     
Sbjct: 69  YIILVTFIGTTLYKYLPVLTIQISQLIHQFRLFFQN-----------PPDNEIIKYALST 117

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           ++  +  K + +      G+D I +  +  G + L   LS+I  +  L     +   I  
Sbjct: 118 INGMEVSKYIEQ------GVDVIYQSIANIGKVSLQILLSLILSLFFL----LEKERIIS 167

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 +     ++++I+    +  RS         +IA+   ++   A  + G P  + 
Sbjct: 168 FTSKFKDSSLKVFYEEIAYFGERFARSFGKVIEAQFLIAVVNCVLTVIALVILGFPQLLV 227

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L V+  ++ +IP  G  IS   + I     G +     + ++  I   +    L P  + 
Sbjct: 228 LAVMVFLLGLIPVAGVIISLFPLCIIAYNVGGVMYVVYILVFITIIHALESYFLNPKFMS 287

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               LP   TF  L+     +G+ GL IG  +   +  +  
Sbjct: 288 AKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLN 328


>gi|218462579|ref|ZP_03502670.1| hypothetical protein RetlK5_25350 [Rhizobium etli Kim 5]
          Length = 287

 Score = 69.9 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 74/194 (38%), Gaps = 8/194 (4%)

Query: 141 LKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
           + + G+ F+    ++    G   +D    ++   +  F+   D   +  ++D      + 
Sbjct: 49  ILSEGMGFLTGLFAQIWNSGKAIVDVISLLVVTPVVAFYILLDWDRMVSKVDQWIPRDYV 108

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
           A  ++I++ + + I     G   + +  G+   +   L G+   + +G+   +++ IP  
Sbjct: 109 ADVRQIAKEIDQAIAGFIRGQGSLCLILGIYYAAGLSLVGLNFGLLIGLFAGMISFIPYV 168

Query: 258 APIS----FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
             +        V+I        +    + ++ +   F+    L+P LVG  + L  +   
Sbjct: 169 GSLVGLVLSVGVAIVQFWPDYPWIGLVIVVFFSG-QFLEGNILQPKLVGSSVGLHPVWLM 227

Query: 314 FGLVGGVRTMGLLG 327
           F L       G +G
Sbjct: 228 FALFAFGALFGFVG 241


>gi|315224179|ref|ZP_07866019.1| brp/Blh family beta-carotene 15,15'-monooxygenase [Capnocytophaga
           ochracea F0287]
 gi|314945912|gb|EFS97921.1| brp/Blh family beta-carotene 15,15'-monooxygenase [Capnocytophaga
           ochracea F0287]
          Length = 358

 Score = 69.9 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 54/347 (15%), Positives = 118/347 (34%), Gaps = 24/347 (6%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE-ESSTFLAVIATVSVMC 72
            +++ + L +LY L+     ++ +L++     P+   F  K + ++ T   V+  +  + 
Sbjct: 17  IVLVALGLYTLYLLQSIIIYLIVSLVLTLMGKPLIQFFYKKLKIKNRTLCVVLTMLLFVI 76

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           L +          + + K L S  +   +  +                 L          
Sbjct: 77  LSLGVFSLFIPLLISQGKNLSSLNIELLKDNLDAL--------------LHQTLSKVGLQ 122

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
            +  S    +      IP F + F      + +    ++   FFF +DG  I   L S+ 
Sbjct: 123 REDYSFGVQEMLNFIDIPNFLNSFISFISSFGVGFFSVLFITFFFMKDGDRILIALLSIF 182

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                   K     +  ++   F+G+ +      ++      + GV +   + ++ A++ 
Sbjct: 183 SPKRKRKLKTSIFKINNLLSRYFVGLMLQLTILFIIYTIVLLIFGVENAFIIALLCALLN 242

Query: 253 MIPGGAPISFTAVSIYLLIKGNI--------FNATCLFLWGAIELFIVDKTL-RPFLVGG 303
           +IP   P+    +   L +  N+           T   L G I    +D    +P +   
Sbjct: 243 LIPYIGPMIGFILMALLTMSSNLQNDFMTVSLPTTIYVLIGFIIGQFIDNFFSQPLIFSN 302

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            +K   L  F   +      G+ G+ +      ++ V+ KE     K
Sbjct: 303 SVKSTALEIFLITLISGTLFGITGMVLAIPAYTVLKVVLKEFFPNNK 349


>gi|257452512|ref|ZP_05617811.1| permease [Fusobacterium sp. 3_1_5R]
 gi|317059053|ref|ZP_07923538.1| permease [Fusobacterium sp. 3_1_5R]
 gi|313684729|gb|EFS21564.1| permease [Fusobacterium sp. 3_1_5R]
          Length = 373

 Score = 69.9 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 50/338 (14%), Positives = 121/338 (35%), Gaps = 15/338 (4%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           FF P++ A+ +    +P+      K         ++  + +     + +L +       +
Sbjct: 39  FFIPLIWAMFLSILLYPLQKFLEEKLHLKRELALIVVLILLGLCVSLFMLTVIPQVSKSI 98

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           KEL        Q    + + + +    + +       L   ++  + + +    + I  I
Sbjct: 99  KEL-------QQIYPYMEKRVGEFLDKILSLLHKQGLLLMNETEIMKAISEYTQDNIQKI 151

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALF---FFYRDGFSISQQLDSLG----EHLFPAYWKK 202
            +          D    +    I LF   F         + ++ +     +        +
Sbjct: 152 QQIGISIFWNVFDVTFGLANFFIGLFLACFILLKPEDFVKVIERVIYLNVKKEKALNIIE 211

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           I R    +  +  +G  +++I   L++    +L   P  V   ++  +  MIP    +  
Sbjct: 212 ILRKSKDIFLNYVVGRLLVSIIVALIVFLILFLTKTPYPVLTALLFGVGNMIPYLGVLGA 271

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
           + VS +L++    +    L     +   +    + P +VG  + L        ++   + 
Sbjct: 272 SIVSGFLILIFAPYKIGYLIFAIILSQALDGFIIGPKIVGDKVGLNSFWVVVAILLCGKL 331

Query: 323 MGLLGLFIGPVLMALIAVIWKE-SIMAIKENKEKISSN 359
           MG+ G+F+G  +  +I +I++E     +++ KE I  N
Sbjct: 332 MGIAGMFLGVPIFCIIKLIYQEKWRAYVEKEKEGIEEN 369


>gi|325840825|ref|ZP_08167189.1| putative membrane protein [Turicibacter sp. HGF1]
 gi|325490195|gb|EGC92532.1| putative membrane protein [Turicibacter sp. HGF1]
          Length = 386

 Score = 69.9 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 53/335 (15%), Positives = 121/335 (36%), Gaps = 19/335 (5%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEE----------SSTFLAVIATVSVMCLFIVPLLF 80
            +P+L A +I +  +          ++          S+     I+ + +  L    +  
Sbjct: 53  ISPILYAFVISYILYRPLMFIERNFKKGFKKISKKGISNGMARTISILLLAILVFFAIYT 112

Query: 81  LFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
           L       + E +  V+ +       +  W++++   + A  +  + +            
Sbjct: 113 LINSIFPPLIENIDTVMQSLPNFQTIITEWINNLTPYIKAVSITNEQIQEFTLFLTNLLK 172

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG----EHL 195
            L TN ++      +          ++ +  II  F+F +D  +I   +D LG    +  
Sbjct: 173 GLLTNALN----IGTGVVTNLTGLVINTLATIILTFYFLKDKETIFAGIDKLGTVIFKPQ 228

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
             A  K     + +V  +  +G  I A   G+       + G P  + +G+I  +  +IP
Sbjct: 229 IKAKIKHFLHDLHEVFGNFIVGQLIDAAIVGVASSLLLLIIGHPFALLIGLIAGVTNIIP 288

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI   A+++ L +  ++      F+       I    ++P ++G  + L  +  F  
Sbjct: 289 YVGPIIGAALALILGLFTSVKLGILGFILLIAYQQIDGYFIQPKILGDSVGLAPVWIFIV 348

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++ G   +G  G+ +   + AL  V        ++
Sbjct: 349 ILIGGNYLGAPGMILSVPIAALCKVYIDRRFQKLE 383


>gi|257054884|ref|YP_003132716.1| putative permease [Saccharomonospora viridis DSM 43017]
 gi|256584756|gb|ACU95889.1| predicted permease [Saccharomonospora viridis DSM 43017]
          Length = 367

 Score = 69.9 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 55/351 (15%), Positives = 113/351 (32%), Gaps = 27/351 (7%)

Query: 17  MFIILVSLYFLK-------GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             I+  +L+ L+           P+  AL+      P+ S  +  +        V A + 
Sbjct: 23  FLILFAALWALRNIGKHLSYVIIPLAVALLFTAVLEPVVSWLVRHRWPRP-LAVVAALLF 81

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              +    + F+ +  +    EL  +V+ + +    +  WLS  P               
Sbjct: 82  GFVIVGGLVAFVVFSVIDSYDELRRRVLESIE---QLRSWLSQSP------------FPA 126

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              L    + ++  N    + +  + F      + + ++  ++    F   G  +     
Sbjct: 127 SGELLGRVQNWIGGNQDTLVSQTLTAF-STVGSFFVGLLIALVLFIMFLHAGPRLWAATL 185

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                        I R   + +        ++A+ + + +G    + GVP  V L  +  
Sbjct: 186 LPWRPSTRELLDSIGRRAYRGVVIYVRVTALVALIDAIGIGIGLAIVGVPLTVPLAALVF 245

Query: 250 IMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           I   IP    +   F AV++ L+  G    A  +     +   +  + L P L G    L
Sbjct: 246 IGGFIPYIGAVVSGFLAVAVTLVSNG-FVPALIILGVVLLVQQLEGQVLHPILQGNFTSL 304

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                   LV G    G+ G+     L+A I            + +E+  +
Sbjct: 305 HPAVVLVALVIGGAEGGIAGVLFAVPLLAAIRGAVLAYAEHRAKEEERAKA 355


>gi|206977447|ref|ZP_03238342.1| putative membrane protein [Bacillus cereus H3081.97]
 gi|206744297|gb|EDZ55709.1| putative membrane protein [Bacillus cereus H3081.97]
          Length = 337

 Score = 69.9 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 56/341 (16%), Positives = 121/341 (35%), Gaps = 25/341 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +G  R++++ I+ + LY LK     +L   I+ F           K + +   +    
Sbjct: 9   RSRGFQRFLVLIIVALVLYALKSMINLILITFILTFLMDRFQRFISRKLKVNRKIVIACL 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++      L        +++ +L+ +  L  Q+           P      +     
Sbjct: 69  YIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQN-----------PPDNEIVKYALST 117

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           ++  +  K + +      G+D I +  +  G + L   LS+I  +  L     +   I  
Sbjct: 118 INGMEVSKYIEQ------GVDVIYQSIANIGKVSLQILLSLILSLFFL----LEKERIIT 167

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 +     ++ +I+    +  RS         +IA+   ++   A  + G P  + 
Sbjct: 168 FTSKFKDSKLKIFYGEIAYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLLV 227

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L V+  ++ +IP  G  IS   + I     G +     + ++  +   +    L P  + 
Sbjct: 228 LAVMIFLLGLIPVAGVIISLFPLCIIAYNVGGVIYVVYILVFITVIHALESYFLNPKFMS 287

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               LP   TF  L+     +G+ GL IG  +   +  +  
Sbjct: 288 AKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLD 328


>gi|120436003|ref|YP_861689.1| membrane protein, UPF0118 [Gramella forsetii KT0803]
 gi|117578153|emb|CAL66622.1| membrane protein, UPF0118 [Gramella forsetii KT0803]
          Length = 362

 Score = 69.9 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 131/343 (38%), Gaps = 18/343 (5%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + ++L  L+ ++     +  A +I     PI     +K       LAVI  + ++    V
Sbjct: 20  ILLLLYFLWEIQSVIVYIAVAGVIALVGRPIVIFLRNKLRL-PNQLAVITVLILVLAIFV 78

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            ++F+F   ++E  + + ++         +  + +D+         +           + 
Sbjct: 79  GIIFVFVPIVIEQSKYLGQI--------DIEAFKNDLNDLNQQVNKYLGVEEINIIEGLK 130

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
              F++   +  IP+F +    I     +++  ++   FFF +D   +   +        
Sbjct: 131 RSEFIRNFDVSLIPQFLNNVFGILGATLIAVFSILFISFFFLKDSKLMLNSILVFANRGD 190

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
              ++++   +  ++   F+G+T+      ++      +  + + +A+  I A + ++P 
Sbjct: 191 EQKFQRVFNKIKVLLSRYFVGLTMQIAVLFILYTILLSVFEINNPIAIAFICAFLNLVPY 250

Query: 257 GAPISFTAVSIYLLIK---GNIFNATCL-----FLWGAIELFIVDKTL-RPFLVGGPIKL 307
             P+    +    +I    G  F++  L      + G     ++D  + +P + G  +K 
Sbjct: 251 LGPLLAGILMALFVISSFLGADFSSIILPRLIYVMLGYGICQLIDNFISQPMIFGASVKS 310

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             L  F  ++      G+ G+ +       + VI KES+   K
Sbjct: 311 HPLEIFLIILIAGLMFGITGMVVAVPFYTALKVIAKESLSEYK 353


>gi|256254732|ref|ZP_05460268.1| hypothetical protein BcetB_10635 [Brucella ceti B1/94]
          Length = 227

 Score = 69.9 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 59/176 (33%), Gaps = 3/176 (1%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
           G   +D     +   +  F+   D   +   +DS          ++I+R +   +     
Sbjct: 1   GKSLIDIAGLFVVTPVVAFYMLLDWDRMVNSIDSWVPRKQLHTVRRIAREMNAAVAGFIR 60

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG--- 273
           G   + +  G        L G+   + +G    +++ IP        A++I + +     
Sbjct: 61  GQGTLCLILGTYYAIGLTLTGLNFGLLIGFFAGLISFIPYIGSFVGLALAIGVALVQFWP 120

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           +      +     +  FI    L+P LVG  + L  +   F L       G  G+ 
Sbjct: 121 DWIMVCTVAAVFFLGQFIEGNILQPKLVGSSVGLHPVWLMFALFAFGSLFGFTGML 176


>gi|126432772|ref|YP_001068463.1| hypothetical protein Mjls_0159 [Mycobacterium sp. JLS]
 gi|126232572|gb|ABN95972.1| protein of unknown function UPF0118 [Mycobacterium sp. JLS]
          Length = 381

 Score = 69.9 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/336 (13%), Positives = 114/336 (33%), Gaps = 14/336 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++ +  +  +L  +  L+    PV  A ++     P    F+ ++         +  +
Sbjct: 25  RLLIIFGALVAVLWLVARLEIIVVPVALATMLAALLMPAVD-FLDRRGAPRGGAVALVLL 83

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           S + +    L F+    +  M  L  +V  +        RWL + P  +   ++     +
Sbjct: 84  SGIAVVGGILTFVVSQFVEGMPALGEQVTRSIDGMR---RWLVEGPLDLSREQIDNAGNA 140

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             ++++   E          +   A        +     + ++  L F    G +I   +
Sbjct: 141 AIEAVRNNQER---------LTSGALSTAGTITEIVTGALLVLFTLIFLLHGGRNIFGFI 191

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +         +   R     +        ++A+ + + +G+   +  VP  + L  + 
Sbjct: 192 TQVFPPDVRDRVRGAGRAGFHSLIGYVRATFLVALVDAIGIGTGLAIMSVPLALPLASLV 251

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A +P  GA ++     I  L+   +  A            +    L+P ++G  + +
Sbjct: 252 FLGAFVPLVGAVVTGFLAVIVALLTKGLVYALITLGLILAVQQLEGHVLQPLVMGRAVSI 311

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             L     + GG    G++G  +    +A +    +
Sbjct: 312 HPLAVVLAIAGGGVLAGIVGALLAVPAVAFLNSAIR 347


>gi|225619332|ref|YP_002720558.1| PerM, putative permease [Brachyspira hyodysenteriae WA1]
 gi|225214151|gb|ACN82885.1| PerM, Predicted permease [Brachyspira hyodysenteriae WA1]
          Length = 435

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 123/356 (34%), Gaps = 20/356 (5%)

Query: 15  MIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +++ + L +L+ +K      AP +  + I +   P+ +   +K        AV+     +
Sbjct: 74  IVLILALFTLWVIKEAGYLVAPFIWGIFIAYMFDPLITKMQNKI---PRLAAVLLIYIPL 130

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKV---------VLANQHGIPVPRWLSDIPGGMWASEL 122
            +  +  +       +E  E++ K             +   I +   L+   G  +   L
Sbjct: 131 LILAIIFVVFILPRTIEQIEVILKTLPQYVDKIYNSISDMLISLSEKLNRTIGKSFDINL 190

Query: 123 WTKHLSHPQSLKILSE--TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                +    L   S   T +    IDF  +  +    IF       + +    F+   D
Sbjct: 191 EIDSKAINDFLFGNSGVITLMYRKIIDFRFQNINSITTIFSIIFSYFVILPFVTFYLMLD 250

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
             +I  ++  +    + +    I +    +I S  +GMTI+AI   ++      +     
Sbjct: 251 FQNIKDRIIKIIPMRWQSSVSNIIKNSNYIINSYVVGMTILAISFFIISYILLSVTNTKY 310

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFN---ATCLFLWGAIELFIVDKTLR 297
              L ++  I+  IP   P +    ++++ I         A  + +   I   +    + 
Sbjct: 311 AFILALLRGILNYIPFIGPFAAFISALFIGIITEPVWWHGALKMCIIYGIIQILDSGIMA 370

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           P ++G  +K+  +   F  + G    G LG+        +I +  K        +K
Sbjct: 371 PKILGKSVKIHPIAVMFSTIIGGVLFGFLGVLFAVPFCGIIIITIKNFFNKYYHSK 426


>gi|315657404|ref|ZP_07910286.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315491876|gb|EFU81485.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 469

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 59/330 (17%), Positives = 110/330 (33%), Gaps = 27/330 (8%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           I+  L  + G F P   A  +     P     I  +       A++  V +  +  + L 
Sbjct: 64  IIFLLSLIAGVFMPTFLAFSLALAVRPASEWLIRHRWP-VGLAALVNIVLLFAILFIMLG 122

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            +       + EL              PR+      G     L+   ++        +  
Sbjct: 123 LIAIAITAMVTEL--------------PRY------GAKFQALYEHAINQLDRRGFDTSA 162

Query: 140 FL---KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            L   K   I+ I  + S F         ++ F+I+   F   D   + ++   L  +  
Sbjct: 163 VLDSWKNVDINRIFSYLSGFANQISGAGTTLFFIIMVAIFVVGDTVVVRRRAAELASYAP 222

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
              +    R     +R+ FL  T+      LV     +  GVP+    G++  +   IP 
Sbjct: 223 G--FAIALRNFSLRVRTYFLMTTVFGAVVALVDVGILYAFGVPTPWTWGILAFVANYIPA 280

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G  +S     +  L    ++ A  +F+   +   +    L+P + G  + L    +F  
Sbjct: 281 VGFILSMIPPILLALALDGVWPAVGVFIGYMVASLLFLNILQPRIAGNAVGLNATVSFLS 340

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           L+     MG LG  +   L      I+ +S
Sbjct: 341 LMVWSTVMGPLGAILAVPLTLFFKAIFVDS 370


>gi|86130472|ref|ZP_01049072.1| conserved hypothetical protein [Dokdonia donghaensis MED134]
 gi|85819147|gb|EAQ40306.1| conserved hypothetical protein [Dokdonia donghaensis MED134]
          Length = 365

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 54/343 (15%), Positives = 122/343 (35%), Gaps = 18/343 (5%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + I+L  LY ++     +  A ++     P+        + S T+ A++    ++ + + 
Sbjct: 23  ILILLWLLYTIQSVLVYLAVAAVLSLVGRPVVKFLRYTLKFSPTWAAIVTIFILLLVILG 82

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             +      + + + L           I       +I         +           + 
Sbjct: 83  VFMLFIPVVIDQSQHL---------GQIDFEEVKVNINRLFGEIATYFGLDKMTIIQGVQ 133

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               +K      IP F +          +    +I   FFF +D   +   L +  +   
Sbjct: 134 EAELVKNFDFSIIPAFLNGIIGNLGAAGIGTFAIIFITFFFLKDNRLLVNSLLAFAKKGN 193

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
              + ++   +  ++   F+G+ I      ++        G+ + +A+ +  A++ ++P 
Sbjct: 194 EGKFLRVFEKIKYLLSRYFIGLIIQVFTMFVLYAIILLSFGIDNALAIALFCAVLNLVPY 253

Query: 257 GAPISFTAVSIYLLIKGNI---FNATCL--FLWGAIELF---IVDK-TLRPFLVGGPIKL 307
             P+   AV + L+   NI   F    L   LW ++      +VD   ++PF+ G  +K 
Sbjct: 254 LGPLVGGAVMLLLVTSSNIEMDFRTIILPKLLWISLCYGAAQMVDNFVIQPFVFGNSVKS 313

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             L  F  ++      G+ G+ +   +   + VI KE +   K
Sbjct: 314 HPLEIFLAIIIAGLLFGVFGMILAVPVYTALKVISKEFLSEYK 356


>gi|291571975|dbj|BAI94247.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 382

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 52/327 (15%), Positives = 116/327 (35%), Gaps = 11/327 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
              ++ ++++  +  P+ +   S K        ++  ++++       L +    + ++ 
Sbjct: 40  IILIMISVVLAASIIPLVNWAQSLKMPR-WLAVIVVYLTLIGGITGLGLIIGPSVVDQIN 98

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            LV ++ +  +  + +   ++   G    +      L            ++  +    I 
Sbjct: 99  LLVRQLPIFAERSLDLVSNIASSLGEDIPA------LIDRLVDTQSLTNWVIRSSQQLIL 152

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
           R         +    S+I  +    +   D  ++ +    L  + +       +  V + 
Sbjct: 153 RSYG-ITRGIVGGVFSLILSLFVSGYMVADSKTLVKSFVQLFPYPWNDRLAAQAVPVGRR 211

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGV-PSHVALGVITAIMAMIPGGAPIS-FTAVSIY 268
           I S   G  I++   G+ + +     G+    + LG I     +IP   PI       + 
Sbjct: 212 IGSYIRGRLIVSAILGVSITTCLGFLGLKDYALGLGAIAGFTNLIPFLGPILGAIPALVV 271

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
            L KG       L L+  I   +    L P LVG  + +  L     ++ GV+ +GL+G 
Sbjct: 272 ALAKGGFLFFWVLLLY-VIVQNLETYVLDPLLVGSSVGVHPLYQLLSVLAGVQLLGLIGA 330

Query: 329 FIGPVLMALIAVIWKESIMAIKENKEK 355
            I P   A IA + +   +  K   E+
Sbjct: 331 LIVPPWCAGIAALVENLYLEPKRLAEQ 357


>gi|75906634|ref|YP_320930.1| hypothetical protein Ava_0409 [Anabaena variabilis ATCC 29413]
 gi|75700359|gb|ABA20035.1| Protein of unknown function UPF0118 [Anabaena variabilis ATCC
           29413]
          Length = 387

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 50/340 (14%), Positives = 125/340 (36%), Gaps = 15/340 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           I     +       ++ A ++ F   +P+  S+++ +      +A++  +  + + +   
Sbjct: 36  ISAIFDYFHSLIVILVGASVLAFLLNYPV--SWMAHRGARREQVAILVFLLALSILLALG 93

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + LF   + + ++LV+++      G      L++        +  T  L       ++  
Sbjct: 94  VTLFPLALTQAQQLVARIPELIDSGRSQLMMLNE--------KAETVGLPINLDALVVQI 145

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                  +  I        ++     L  +  ++  F+  + G  + Q L       F A
Sbjct: 146 NDRVKGQLQAIAGQVLNLAVVTFTSLLDFLLTMVLTFYLLQHGGELWQSLVEWLPTKFRA 205

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
            + +  R+     ++ F+   I++      L  A+    VP  +  G+   IMA++P G 
Sbjct: 206 PFSQTVRL---SFQNFFITQLILSTCMASALIPAFLWLKVPFGLLFGLTIGIMALVPFGG 262

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
                A++  L+   +      + +   I   I++  + P ++G    L  +     ++ 
Sbjct: 263 S-VGIALTTSLVALQDFSMGVRVLIAAVIVQQILENLIAPRILGNFTGLNPVWILISVLT 321

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           G R  GLLG+ +      +I         +   N+ +++ 
Sbjct: 322 GARVGGLLGVIVAVPTAVIIKTALTALRPSSVNNETEVTD 361


>gi|228473499|ref|ZP_04058252.1| putative membrane protein [Capnocytophaga gingivalis ATCC 33624]
 gi|228275106|gb|EEK13909.1| putative membrane protein [Capnocytophaga gingivalis ATCC 33624]
          Length = 358

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 57/343 (16%), Positives = 125/343 (36%), Gaps = 22/343 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + ++ ++LY L+     ++ A ++     P+      + +  +T+  V A   +M  F  
Sbjct: 20  IVLLALALYKLQNIIIYIVLAAVLALIGRPMVGFLKRRLKFKNTWATVTAIAIIMSFFAG 79

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +       + + K L S  +        V R+L ++   +    + ++  + P+ L I 
Sbjct: 80  IISLFVPLLISQGKNLAS--IDFKALNDNVHRFLDNLLHSLGMGRIESQVGNIPELLNIE 137

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                       I    + F  +  +  + +  ++   FFF +DG +IS+   SL +   
Sbjct: 138 D-----------ISSVLNGFIGVISNIGIGLFSVLFIAFFFMKDGTAISEGFLSLVKPKR 186

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               ++    +  ++   F+G+ +      ++L     + GV   + +  + A++ +IP 
Sbjct: 187 LPKVRETLEDIKTILSRYFVGLFLQLSVVFILLTIVLLIFGVKDALIIAFLCALLNLIPY 246

Query: 257 GAPISFTAVSIYLLIKG--------NIFNATCLFLWGAIELFIVDKTL-RPFLVGGPIKL 307
             P+    V   L I           I   T   L G      +D    +P +    +K 
Sbjct: 247 VGPMIGAVVISVLTISNFMDADLQSVILPKTLYVLIGFFFTQFIDNVFSQPIIFSNSMKS 306

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             L  F   +      G+ G+ +      ++ VI K      K
Sbjct: 307 SPLEIFIVTLVIGTLFGIAGMVVAIPAYTVLKVILKAVFPNNK 349


>gi|170756779|ref|YP_001782180.1| hypothetical protein CLD_2000 [Clostridium botulinum B1 str. Okra]
 gi|169121991|gb|ACA45827.1| putative membrane protein [Clostridium botulinum B1 str. Okra]
          Length = 342

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 47/319 (14%), Positives = 119/319 (37%), Gaps = 13/319 (4%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            ++   +    + +I +   PI++ F+  K  +  F A++  V+++ +  V ++ +    
Sbjct: 31  IVRDILSLFFISFVIYYILKPIHT-FLKHKGINEKFSALLLVVTLIMIIGVFIISIIPAI 89

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + E   + S V    +       ++  I   +               +    E +  + G
Sbjct: 90  IKEGYNITSSVGYIQK-------YIDYIYNKINLLNNNKILGGILNKVNGKIENYTVSIG 142

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + + +F   FG   LDY +    + I +++F   G  I Q+   +         K +  
Sbjct: 143 ENILNKFVG-FGENILDYAV----IPIIVYYFLAAGDKIIQKFFMIFPVKIRGMVKNVLE 197

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K++    +   I+ +   ++        G+   + L +I     +IP   P+  +  
Sbjct: 198 DIDKILVRYIISQIILCLIITILTFLVLIGLGIKLPILLSLINGFFNIIPYFGPVIGSLP 257

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +I +    +   A    +       I    L P + G  + +  L     L+ G +  G 
Sbjct: 258 AILIAFTKSPKTALWALILLYFIQQIEGDILSPKITGDSVDMHPLTVILLLLVGGKIYGF 317

Query: 326 LGLFIGPVLMALIAVIWKE 344
           +G+ +   +  ++ +I+++
Sbjct: 318 VGMVLAIPIGVIMKIIYED 336


>gi|18310763|ref|NP_562697.1| hypothetical protein CPE1781 [Clostridium perfringens str. 13]
 gi|18145444|dbj|BAB81487.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 345

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 53/322 (16%), Positives = 116/322 (36%), Gaps = 19/322 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
            +     VL + I  +   P+Y     + + +  FLA+   +SV+ L +  L  L     
Sbjct: 34  FRDIIFIVLVSGIFAYILKPLYRFLCERTKINKNFLAMAIVLSVIFLILFFLTVLIPSMF 93

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E +     +            +++D+   M   EL          +  + E  +     
Sbjct: 94  KEGESFDGLINGIEF-------FINDLIMKMKFMEL---------GIFDVIEAQVTEKLN 137

Query: 147 DFIPRFASRFGMIFLDY---CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             +  FA+      + +    L+   + +  ++F   G  +S +          A  K +
Sbjct: 138 ILLVSFATSIINNLISFSENILAFAVIPVLAYYFLAYGDLLSNKFLYCCPMEKRALLKNL 197

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
            R V KV+    LG  ++++  G++      + G+   + L  + A++ +IP    +   
Sbjct: 198 GRDVDKVLGKYILGQLLLSLLVGVMTFIGMLILGIKFPLLLAFLNALLNIIPYFGAVLGA 257

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             +I + +         + L   I   I    + P +    I +  +     L+ G +  
Sbjct: 258 IPAIVVALVEGPNKILWVILTFLIIQQIEGNLIAPKITAESIDMHPILIIILLLIGEQIG 317

Query: 324 GLLGLFIGPVLMALIAVIWKES 345
           GLLG+     +  +I V++ + 
Sbjct: 318 GLLGMVFIVPIAVVIKVLFDDW 339


>gi|301018561|ref|ZP_07182939.1| conserved hypothetical protein [Escherichia coli MS 69-1]
 gi|300399680|gb|EFJ83218.1| conserved hypothetical protein [Escherichia coli MS 69-1]
          Length = 376

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 114/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +       +A   V
Sbjct: 41  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITIV 95

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E +S +   N+                       + +   
Sbjct: 96  VVVMLIALTALVGVLAASFNEFISMLPKFNKELT--------------RKLFKLQEMLPF 141

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L I  E  L+    + +  F +           S++ +++ + F   +   +  ++  
Sbjct: 142 LNLHISPERILQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKM-R 200

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L G+   +   V+  +
Sbjct: 201 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGVIVWLGLELMGLQFALMWAVLAFL 259

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA IS     I +L+   I+    +     +   ++   L P ++G  + +  
Sbjct: 260 LNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGMST 319

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 320 MVVFLSLLIWGWLLGPVGMLL 340


>gi|296392986|ref|YP_003657870.1| hypothetical protein Srot_0557 [Segniliparus rotundus DSM 44985]
 gi|296180133|gb|ADG97039.1| protein of unknown function UPF0118 [Segniliparus rotundus DSM
           44985]
          Length = 385

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 62/200 (31%), Gaps = 1/200 (0%)

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
           WA        +        +           I +         ++        +  L FF
Sbjct: 131 WAEHAGLHFSADQLEKARDTTVHFVQQHRSDITQGVFSTASALVEGVTGFFLALFTLIFF 190

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             DG SI + L  L         +       K +     G   +A  + + +G    +  
Sbjct: 191 LSDGKSIWEYLTKLVPGESRERVRAAGSSGYKTLIGYVRGTVFVAAADAIGIGVGLAVLR 250

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTL 296
           VP  + L  +  + A +P    +   +V++ + L+      A    +     + +    L
Sbjct: 251 VPLALPLASLVFLGAFVPVVGSVLAGSVAVLVALVTQGPLVALLTLILLVAVMQLESHVL 310

Query: 297 RPFLVGGPIKLPFLPTFFGL 316
           +P ++G  +++  L     +
Sbjct: 311 QPLVLGRAVRIHPLAVILAI 330


>gi|196234438|ref|ZP_03133264.1| protein of unknown function UPF0118 [Chthoniobacter flavus
           Ellin428]
 gi|196221494|gb|EDY16038.1| protein of unknown function UPF0118 [Chthoniobacter flavus
           Ellin428]
          Length = 572

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/289 (12%), Positives = 79/289 (27%), Gaps = 7/289 (2%)

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
                     + T+    +    L  +    +   K L        Q        L+   
Sbjct: 52  LGCGRGPAVGVVTIISFTVLASVLYVVGAQAVDLAKSLPGYHDNLQQKVFAPLGKLTS-- 109

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
              +++   + H + P  +   +           +   A       L    +   + + +
Sbjct: 110 --AFSAYTRSVHPAKPSDITSEAAQLDLPTSNVNLLSVAKELAGPLLSPIGTAGMVAVYV 167

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
            FF  D  S+  +   L  H       +        +        +I    G+ +G   +
Sbjct: 168 IFFLYDRQSLRDRFIHLVSHGRLHLATQALDDAADRVSRYLAAQLLINATYGIPVGVGLY 227

Query: 235 LAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
             G+P+    GV+  I+  +P  G   ++     +   I         +           
Sbjct: 228 FIGIPNAPLWGVLAIILRFLPYLGIWIVAAFPFVLSFAISPGWAQPVEVVALFIGVELFT 287

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAV 340
              + P+L G    L         +      G  GL +  P+ + L+ +
Sbjct: 288 ANVMEPWLYGASTGLSASAIVVSAIFWTWLWGAGGLLLATPLTVCLVVM 336


>gi|262039320|ref|ZP_06012635.1| sporulation integral membrane protein YtvI [Leptotrichia
           goodfellowii F0264]
 gi|261746650|gb|EEY34174.1| sporulation integral membrane protein YtvI [Leptotrichia
           goodfellowii F0264]
          Length = 299

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 84/232 (36%), Gaps = 17/232 (7%)

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC----------LSIIFMIIALFFFYRD 180
             L       +K +   FI   +S+FG                 + I   +++ FF   D
Sbjct: 11  GYLPKGFTEQIKNSVAGFISMGSSKFGRFINGLIYFVTSIPTIIIYICITVLSTFFISLD 70

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL----- 235
              I   L+      +      I R +  V+ S      I+       L  ++ +     
Sbjct: 71  KKEILNFLEQQLPESWLRKVYNIKREMFTVLGSYVKAQIILMTICFFELLISFNILFFLE 130

Query: 236 AGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
             V   + + ++  ++  +P  GA       +    I G+I     L L   + L  V +
Sbjct: 131 FNVSYPLLISIVICLIDALPILGAGAVLLPWAGISFILGDIKLGIALILIYLLVLS-VRQ 189

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            L P L+   I +  L T   +  G +  G++G  IGPV+M ++  ++ + +
Sbjct: 190 MLEPKLISQNIGVHPLVTLISMYSGFKFFGVMGFLIGPVVMIILKNVFSKEL 241


>gi|269217867|ref|ZP_06161721.1| conserved hypothetical protein [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269212802|gb|EEZ79142.1| conserved hypothetical protein [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 473

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 51/343 (14%), Positives = 128/343 (37%), Gaps = 33/343 (9%)

Query: 12  MRWMIMFIIL----VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           M+ +I+F +     + L+ +   F P   AL +  T  PI+   I K      +L+ I T
Sbjct: 59  MKALIVFSLATFGCIGLHEVSNLFGPAFFALTLVLTVRPIHRWLIRK--GLPPWLSAIFT 116

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++ +  F++ ++ L  + ++++ + +     + +  +                +L  K+ 
Sbjct: 117 MTALFGFLLGMVGLTVWSLIDLPDTLKSYSGSFKGLVQ------------NVVDLAEKYN 164

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                L   S+  L     D I    +            +  + +++ F   D  +++ +
Sbjct: 165 LSSGKL---SKDLLDNLDFDKIVTAVTTVLEYLTSAGSLLGMISLSMLFITVD--TMTMK 219

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
             S   +   +++          +R  ++  +I      +V G       VP   A  + 
Sbjct: 220 FRSKIVYEHDSHFHDALEGFEGRVRQYWIVSSIFGAIVAVVNGIVLAFLHVPMPAAWAIF 279

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           + +   IP  G  I     ++  L+      A  + +  ++   ++    +P + G  + 
Sbjct: 280 SFVTNYIPNIGFVIGLVPPALMGLLDSGWLTALWVVIAYSVINSVIQGIFQPKITGDAVG 339

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPV--LMALIAVIWKESIM 347
           L    TF  L+          + IGP+  ++A+   ++ ++++
Sbjct: 340 LSTTVTFLSLL-------FWTVVIGPLGAILAVPLTLFAKALL 375


>gi|42781075|ref|NP_978322.1| hypothetical protein BCE_2006 [Bacillus cereus ATCC 10987]
 gi|42736996|gb|AAS40930.1| membrane protein, putative [Bacillus cereus ATCC 10987]
          Length = 337

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 57/341 (16%), Positives = 122/341 (35%), Gaps = 25/341 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +G  R++++ I+ + LY LK     +L   I+ F           K + +   +    
Sbjct: 9   RSRGFQRFLVLIIVALVLYGLKSMINLILITFILTFLMDRFQRFISKKLKVNRKIVIACL 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++      L        +++ +L+ +  L  Q+           P      +     
Sbjct: 69  YIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQN-----------PPDNEIIKYALST 117

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           ++  +  K + +      G+D I +  +  G + L   LS+I  +  L     +   I  
Sbjct: 118 INGMEVSKYIEQ------GVDVIYQSIANIGKVSLQILLSLILSLFFL----LEKERIIT 167

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 E     ++++I+    +  RS         +IA+   ++   A  + G P  + 
Sbjct: 168 FTSKFKESKLKIFYEEIAYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLLV 227

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L V+  ++ +IP  G  IS   + I     G +     + ++  +   +    L P  + 
Sbjct: 228 LAVMIFLLGLIPVAGVIISLFPLCIIAYNVGGVIYVVYILVFITVIHALESYFLNPKFMS 287

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               LP   TF  L+     +G+ GL IG  +   +  +  
Sbjct: 288 AKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLD 328


>gi|21222208|ref|NP_627987.1| integral membrane protein [Streptomyces coelicolor A3(2)]
 gi|256786702|ref|ZP_05525133.1| integral membrane protein [Streptomyces lividans TK24]
 gi|289770597|ref|ZP_06529975.1| integral membrane protein [Streptomyces lividans TK24]
 gi|10178903|emb|CAC08478.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
 gi|289700796|gb|EFD68225.1| integral membrane protein [Streptomyces lividans TK24]
          Length = 362

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 102/299 (34%), Gaps = 22/299 (7%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           P+++  +    +  +  A +   +V+ +    +  +    +    ++V+ +  A Q    
Sbjct: 54  PLHARLVKAHVQR-SLAAGLTCAAVLAVVGGAVYIVVSALVETGDQIVTSLRDAAQG--- 109

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
                         ++ +    +    L   +   L   G        +    +  +   
Sbjct: 110 -------------IADHFGAAGTSLDDLASNARELLGKFGGTAASGVVTGI-SVVGEMIA 155

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
             +  ++ +FFF RD       + +L         + ++R     +     G T+IA+ +
Sbjct: 156 MAVLALLLVFFFLRDSDRAVTTVRALAPPGGADTVEAVARRAFGAVEGFMRGTTLIALID 215

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
              +     +  VP  V LG +  + A IP        AV++ L+   +      L+  G
Sbjct: 216 AFCITVGLLVLRVPGAVGLGALVFVGAYIPYLGAFISGAVAV-LVALADRGFVIALWALG 274

Query: 286 AI--ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            +     +    L+P +    +++        L  G    G+LG+ +  P+  A   V+
Sbjct: 275 VVLAVQVLEGHVLQPMIQSRTVQMHPAVVLLALTAGASVAGILGMLLAVPLTAAAFGVV 333


>gi|332042026|gb|EGI78364.1| hypothetical protein HGR_01402 [Hylemonella gracilis ATCC 19624]
          Length = 372

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 52/354 (14%), Positives = 115/354 (32%), Gaps = 12/354 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M  +      ++   I+   +++L+ L     P   A ++ +   P+         + + 
Sbjct: 1   MPLSTPAKNTLIWGAIVLAFVLALWLLGPVLTPFALAAVLAYVLGPVVERLHRGARKLTG 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
                  + ++   +  LL L    +L    +    +L  Q    + R   ++    W  
Sbjct: 61  LDFPRWLLVLLVELLALLLVLGLLLLLVPVLVREWPLLREQLPALLDRL--NVAVQPWLG 118

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFF 177
           +L          LK +    L  N  D +          G + L     ++ + +AL++ 
Sbjct: 119 QLGVTVSLDLAGLKSVLMKHLGGNLEDSMASLMRSLQIGGSLALTLLGHLVLIPVALYYL 178

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             D   + + +         A          +V+     G  ++ I   +       L G
Sbjct: 179 LLDWQRLLRLMREWVPPRLHAACDSFVHEADEVLGHYLRGQLLVMIVLAVYYSIGLSLFG 238

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI-------KGNIFNATCLFLWGAIELF 290
           +   + +G+ T +   IP         +++   +        G       L +   +   
Sbjct: 239 LDLALPIGIFTGLAVCIPYVGFGVGLLLALLAGLLEFGGMDGGLGRVTLMLTVVYGLGQL 298

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           +    L P LVG  I L  L   F L+   +  G +G+ +   + A++ V  + 
Sbjct: 299 VESFYLTPRLVGERIGLHPLAVIFALLAFGQLFGFVGILVALPVSAVLLVAARR 352


>gi|284993127|ref|YP_003411682.1| hypothetical protein Gobs_4772 [Geodermatophilus obscurus DSM
           43160]
 gi|284066373|gb|ADB77311.1| protein of unknown function UPF0118 [Geodermatophilus obscurus DSM
           43160]
          Length = 475

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 93/284 (32%), Gaps = 14/284 (4%)

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
           +        A+   V  +      +  +    +    +L  +     +    +   +   
Sbjct: 172 RHGWPPVLAALTMLVVGLGTVSGIITLVVQQVVTGFGDLAEQAGQGIEQVRDL--VVRTF 229

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
           P      E     L                +  D +   A    +   +    ++  +  
Sbjct: 230 PVTRTQLENAVTQLQQ-----------TLVDNQDVLASGALTTAVTVGEVATGVLLALFT 278

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           LFFF +DG SI   L  L      AY  + +R   + + S       +A+ + + +G   
Sbjct: 279 LFFFLKDGRSIWLWLVGLFPRDSRAYVDEAARRSWRTLISYVRATAAVAMVDAVGIGIGL 338

Query: 234 WLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            + GVP  + L  +  + A IP  G+ ++ T   +  L+      A          + + 
Sbjct: 339 AVLGVPLVIPLAALVFLGAFIPIIGSFLAGTVAVLVALVSQGPVTALVALAIVVAVMQLE 398

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
              L+P L+G  +++  L     +  G+   G+ G  I    +A
Sbjct: 399 GHVLQPLLLGRAVRVHPLAVVLAIAAGLLVAGIFGALIAVPTVA 442


>gi|317063451|ref|ZP_07927936.1| permease [Fusobacterium ulcerans ATCC 49185]
 gi|313689127|gb|EFS25962.1| permease [Fusobacterium ulcerans ATCC 49185]
          Length = 333

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 57/324 (17%), Positives = 110/324 (33%), Gaps = 2/324 (0%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           ++ A+ I     P+ S    + +        I  V V+      +  +        KEL 
Sbjct: 1   MIYAVFISIFLEPLVSKIEQRFKLERWVAVAIVIVLVIIGVAGFVGLILPQLGKSFKELY 60

Query: 94  SKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
           +K+     Q G  + R L  +           +   +  SL   +   L+  GI  +   
Sbjct: 61  NKLPHMQEQLGSLIKRVLDYLKEKELLVIGEKQIEDNIISLLKRNIGNLQEFGISVLLNI 120

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
              + +    + +     +  L         I   L  +       Y          V+ 
Sbjct: 121 V-WWTIALSKFFIGFFLAVFILLDKEYFIRFIKNILAIIFGKEKGMYLSDFLNQSRNVLL 179

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
           +   G  I +   G++     +LAGVP  +   ++  +  MIP    I   A++I+L+I 
Sbjct: 180 NYVWGRIIASAFVGVITFVVLFLAGVPYALLSSLMIGMGNMIPYVGSIVAGAIAIFLVIL 239

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
                   LFL   I   +    + P +V   + +        ++ G   MG +G+F G 
Sbjct: 240 AEPSKIGYLFLAMIIGQTVDGWIVGPKIVSETVGMSTFWVIVAVLIGGSVMGPMGMFFGV 299

Query: 333 VLMALIAVIWKESIMAIKENKEKI 356
               +I +I++  +  I+     I
Sbjct: 300 PAFGIIKLIYETQLKKIENGSTNI 323


>gi|164687897|ref|ZP_02211925.1| hypothetical protein CLOBAR_01542 [Clostridium bartlettii DSM
           16795]
 gi|164602310|gb|EDQ95775.1| hypothetical protein CLOBAR_01542 [Clostridium bartlettii DSM
           16795]
          Length = 401

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/341 (12%), Positives = 111/341 (32%), Gaps = 11/341 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFI-------SKKEESSTFLAVIAT-VSVMCLFIVP 77
            +  F    + A ++ F         +         K+     ++++ T ++   +  + 
Sbjct: 59  IMYPFIIGFVLAYLLNFILKFYEERILVNIKYFNKLKQSKKRLISILLTYLTFGIMIYLC 118

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           + F+       +  +V+++    +    + +   DI      S+     L+   +     
Sbjct: 119 IHFVLPQLTESIVGIVNQIPHYMEIASKMTQ---DIIKDFDISDQMATFLNDKLNEISTR 175

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
                +  +  I            +  L +I  +  L    +      + + ++      
Sbjct: 176 LIAFISEIVPLIANIIMSLLSSIWNIVLGLIISVYLLLDKEQFYAMSKKMVSAIFNKKTA 235

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
               +++            G  I +   G++    + +A +P  V + VI  +  +IP  
Sbjct: 236 DRILELTHRSNNTFGRFISGKIIDSAIIGVISFILFAIAKMPYVVLISVIIGVTNVIPFF 295

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P         L++  +   A    +   +   +    + P ++G  I +      F ++
Sbjct: 296 GPFIGAVPCFILILFESPTKALIFLILIFLIQQLDGNVIGPKILGNSIGISAFWILFAIL 355

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                 GL+G+ IG  L A+I  I KE++      K   + 
Sbjct: 356 VAGEIFGLVGMVIGVPLFAVIYSIIKENVEYKLREKNLPTD 396


>gi|297270414|ref|XP_001107939.2| PREDICTED: transmembrane protein C9orf5-like isoform 2 [Macaca
           mulatta]
          Length = 880

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 9/190 (4%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDG---FSISQQLDSLGEHLFPAYWKKIS-RIVPKVIR 212
           G   L++ LS+I  +  LF+        +   + + SL     P     I  + V + IR
Sbjct: 650 GTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIR 709

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI 271
             F     +A   GL     + + G+        + AI+  +P  G   +     + L +
Sbjct: 710 GVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWL 769

Query: 272 KGNIF-NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +   A  L ++  +  + VD  +   + GG        T   + GG   +GL G  I
Sbjct: 770 TQGLGCKAILLLIFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAII 826

Query: 331 GPVLMALIAV 340
           GP+L+ ++ V
Sbjct: 827 GPILLCILVV 836


>gi|283455471|ref|YP_003360035.1| hypothetical protein BDP_0542 [Bifidobacterium dentium Bd1]
 gi|283102105|gb|ADB09211.1| Conserved hypothetical membrane spanning protein [Bifidobacterium
           dentium Bd1]
          Length = 499

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 40/353 (11%), Positives = 110/353 (31%), Gaps = 23/353 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYF--------LKGFFAPVLSALIIGFTSWPIYSSFISK 54
           ++   P+ + R ++   I + ++         +      ++ +L +     P+    +  
Sbjct: 46  DSRRPPEWLGRALLYIAIAIVVFSFCWRSWGQIAYLVMDIVVSLFLALAVEPVVVPLVKH 105

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
                 F ++ A V +  +            + ++  +++ +          P     I 
Sbjct: 106 -GWKRAFASLFALVLLAVILCTLFGLFGNMFVQQVIAMINGL----------PDLYKQI- 153

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
              + S+     L    SL       ++T+ +      A         + L+++ +++  
Sbjct: 154 -CDFVSQYTNFELPEINSLGSEILKNIQTSWVTDFAGTALSTVSGLFSFLLNLMTIVMTT 212

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           ++    G  + +             +  +  +    I S      I+A+           
Sbjct: 213 YYISAAGPKLRRAACQWMAPAAQRRFLFVWTVSQGQISSFLFSRAILALLNATFTAICLE 272

Query: 235 LAGVPSHVALGVITAIMA-MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           +  VP  + L +   + +  IP  G  I      ++      I+    +  +  +   I 
Sbjct: 273 VLHVPYWLPLALFCGVTSQFIPMLGTYIGGALPVLFAWGNRGIWYGIAVLAFICVYQQIE 332

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +    P +    + +     F  ++      G LG F+   + A I  I++  
Sbjct: 333 NLIFAPKISQRTMNINDAVAFLAVLAFGSLFGALGAFLALPVTASIQTIFRTY 385


>gi|306823458|ref|ZP_07456833.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|309802730|ref|ZP_07696834.1| putative membrane protein [Bifidobacterium dentium JCVIHMP022]
 gi|304553165|gb|EFM41077.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|308220794|gb|EFO77102.1| putative membrane protein [Bifidobacterium dentium JCVIHMP022]
          Length = 500

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 40/353 (11%), Positives = 110/353 (31%), Gaps = 23/353 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYF--------LKGFFAPVLSALIIGFTSWPIYSSFISK 54
           ++   P+ + R ++   I + ++         +      ++ +L +     P+    +  
Sbjct: 50  DSRRPPEWLGRALLYIAIAIVVFSFCWRSWGQIAYLVMDIVVSLFLALAVEPVVVPLVKH 109

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
                 F ++ A V +  +            + ++  +++ +          P     I 
Sbjct: 110 -GWKRAFASLFALVLLAVILCTLFGLFGNMFVQQVIAMINGL----------PDLYKQI- 157

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
              + S+     L    SL       ++T+ +      A         + L+++ +++  
Sbjct: 158 -CDFVSQYTNFELPEINSLGSEILKNIQTSWVTDFAGTALSTVSGLFSFLLNLMTIVMTT 216

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           ++    G  + +             +  +  +    I S      I+A+           
Sbjct: 217 YYISAAGPKLRRAACQWMAPAAQRRFLFVWTVSQGQISSFLFSRAILALLNATFTAICLE 276

Query: 235 LAGVPSHVALGVITAIMA-MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           +  VP  + L +   + +  IP  G  I      ++      I+    +  +  +   I 
Sbjct: 277 VLHVPYWLPLALFCGVTSQFIPMLGTYIGGALPVLFAWGNRGIWYGIAVLAFICVYQQIE 336

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +    P +    + +     F  ++      G LG F+   + A I  I++  
Sbjct: 337 NLIFAPKISQRTMNINDAVAFLAVLAFGSLFGALGAFLALPVTASIQTIFRTY 389


>gi|227547834|ref|ZP_03977883.1| integral membrane protein [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227080127|gb|EEI18090.1| integral membrane protein [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 502

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 53/154 (34%), Gaps = 1/154 (0%)

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           FFF +DG      +          +  ++       +        I++  + + +G    
Sbjct: 238 FFFLKDGDQFLPFVRKYSGVRAGWHLTEVLMRSWNTLSGFIRTQAIVSAVDAVFIGVGLI 297

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVD 293
           L GVP    L V+T     IP     +  A+S+ + L+     NA  + L       I  
Sbjct: 298 LLGVPLWPVLVVVTFFAGFIPIIGAFTAGALSVVVALVSNGFTNAILVLLLVIAVQQIEG 357

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
             L+P L    + L        +  G    G++G
Sbjct: 358 NVLQPILQSRAMGLHAAVVLLSVALGGTLFGIIG 391


>gi|28379647|ref|NP_786539.1| transport protein [Lactobacillus plantarum WCFS1]
 gi|28272487|emb|CAD65411.1| transport protein [Lactobacillus plantarum WCFS1]
          Length = 348

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 53/333 (15%), Positives = 114/333 (34%), Gaps = 17/333 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           ++GF   VL   I  +    +      +         ++  V V+ LFI  L +     +
Sbjct: 29  MRGFATVVLLTTIFAYLGIKLSRWLNLRTHLPYWIAVIVVYVGVIALFIGALSYAAPTLV 88

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++K +   +  A          +++ P      + W     H   L    +  L T GI
Sbjct: 89  DQLKVIPDMLAKA----------ITNHPVLNKNIDKWVNQAIHSSELIQNGKALLVT-GI 137

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +    + F  + +   LS IF +            +  +      +++      ++  
Sbjct: 138 KGLSEVGTGFTHVLMAIFLSFIFAVSRGRMMVFGRQFLQSKFKKFFTNVY-----YLTHK 192

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAV 265
              ++        +I     +++   + + G+PS + L +I  I+ ++P  G  IS   +
Sbjct: 193 FVMILGRIIETQLVICTINTILMTIGFMIIGMPSIMVLSIIVFILGLVPVAGVLISMIPL 252

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++     G +     + +   +        L P L+     LP   TF  L+     +G 
Sbjct: 253 TLLGFASGGLIRVVWIIVLVILIHAFESYFLHPRLMADRTDLPVFVTFITLIIMESLLGA 312

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            GL IG  +++    I        +    +I+ 
Sbjct: 313 WGLIIGIPIVSFFLDILGVQNSEPRRVTSQIAK 345


>gi|297685074|ref|XP_002820124.1| PREDICTED: LOW QUALITY PROTEIN: transmembrane protein C9orf5-like
           [Pongo abelii]
          Length = 880

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 9/190 (4%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDG---FSISQQLDSLGEHLFPAYWKKIS-RIVPKVIR 212
           G   L++ LS+I  +  LF+        +   + + SL     P     I  + V + IR
Sbjct: 650 GTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIR 709

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI 271
             F     +A   GL     + + G+        + AI+  +P  G   +     + L +
Sbjct: 710 GVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWL 769

Query: 272 KGNIF-NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +   A  L ++  +  + VD  +   + GG        T   + GG   +GL G  I
Sbjct: 770 TQGLGCKAILLLIFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAII 826

Query: 331 GPVLMALIAV 340
           GP+L+ ++ V
Sbjct: 827 GPILLCILVV 836


>gi|224371796|ref|YP_002605960.1| PerM [Desulfobacterium autotrophicum HRM2]
 gi|223694513|gb|ACN17796.1| PerM [Desulfobacterium autotrophicum HRM2]
          Length = 355

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 52/354 (14%), Positives = 116/354 (32%), Gaps = 12/354 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +++ + +P+    ++ +   L  +Y       PVL A+II +    +    +  K     
Sbjct: 9   VKKNISDPKLFYLFLSISFGLAVIYLFGEMLTPVLVAVIISYLLEGLILQLMRLKVPR-- 66

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
                  VSV  +F+V L+      +  +  +  +++   Q    +          +   
Sbjct: 67  ------IVSVTMVFMVYLIAFTITVIWFIPLISREIIQLFQQLPSMLARAQGQLESLPEH 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                 +S  Q L     + L   G   +  F+         + + ++ +   +FF  +D
Sbjct: 121 YPELVTVSQVQELYAFISSSLSAIGKQVLA-FSFSSVKELATFTVYLVLVPFLVFFLLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   ++             +   V   I +   G     +         Y L GV  
Sbjct: 180 KEMLIGWINRYSPPANDLVT-TVLTAVNLQIANYIRGKGWEVLIIWAGTWVCYHLIGVQY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRP 298
            + L  ++ I  ++P  G  + F    +    +          +     + ++D   L P
Sbjct: 239 ALLLSFLSGISVILPYIGVTVVFLPTILIGYFQFGWDVRFLYTVSAYSAVQLLDGFILAP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            L+ G + L  +     ++      GL GLF    L  L+  +    ++  +E 
Sbjct: 299 LLLAGVVDLHPVVIVIAILFFGNLWGLWGLFFAIPLATLVKALLDIWMVRQRER 352


>gi|148670305|gb|EDL02252.1| RIKEN cDNA D730040F13, isoform CRA_b [Mus musculus]
          Length = 800

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 9/190 (4%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDG---FSISQQLDSLGEHLFPAYWKKIS-RIVPKVIR 212
           G   L++ LS+I  +  LF+        +   + + SL     P     I  + V + IR
Sbjct: 570 GTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIR 629

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI 271
             F     +A   GL     + + G+        + AI+  +P  G   +     + L +
Sbjct: 630 GVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWL 689

Query: 272 KGNIF-NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +   A  L ++  +  + VD  +   + GG        T   + GG   +GL G  I
Sbjct: 690 TQGLGCKAILLLVFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAII 746

Query: 331 GPVLMALIAV 340
           GP+L+ ++ V
Sbjct: 747 GPILLCILVV 756


>gi|157374839|ref|YP_001473439.1| hypothetical protein Ssed_1700 [Shewanella sediminis HAW-EB3]
 gi|157317213|gb|ABV36311.1| protein of unknown function UPF0118 [Shewanella sediminis HAW-EB3]
          Length = 359

 Score = 69.9 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 43/323 (13%), Positives = 103/323 (31%), Gaps = 22/323 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G      + +IL  +        P + +  I     P+       K   +  LAV+  +
Sbjct: 12  KGFAIMAFIVVILAGIKAASPIVVPFVLSAFIAVICNPMIGGLTRLKVPRA--LAVLLMM 69

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +  + L  +    + E    +                             W     
Sbjct: 70  VFIVMMGLWLAQIVGSSINEFSTQLPHYRDQLVEQFG-----------------WITGKL 112

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              ++ I  E  L            +           ++  +I+ + F   +  ++ ++L
Sbjct: 113 RTFNIIITKEQILAYFDPGIALSMTTNMLSGVGSVMANLFLIILTVVFMLFESETLPKKL 172

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                       ++I R +  V +   +   ++++  G+++G+   + GV   +  GV+ 
Sbjct: 173 -HFALDDPDMRMQQIDRFLHSVNQYMVIKT-LVSLATGVIIGTGLAIIGVDYALLWGVVA 230

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP  G+ I+     +   I+     A    L       ++   + P  +G  + L
Sbjct: 231 FLFNYIPNIGSIIAAIPSVMLAFIQLGPAAAGGTALLYLGTNTVMGNVVEPKYMGKGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFI 330
             L  F  L+     +G +G+ +
Sbjct: 291 STLVVFLSLIFWGWLLGSVGMLL 313


>gi|308181879|ref|YP_003926007.1| permease [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|308047370|gb|ADN99913.1| permease [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 348

 Score = 69.9 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 53/333 (15%), Positives = 114/333 (34%), Gaps = 17/333 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           ++GF   VL   I  +    +      +         ++  V V+ LFI  L +     +
Sbjct: 29  MRGFATVVLLTTIFAYLGIKLSRWLNLRTHLPYWIAVIVVYVGVIALFIGALSYAAPTLV 88

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++K +   +  A          +++ P      + W     H   L    +  L T GI
Sbjct: 89  DQLKVIPDMLAKA----------ITNHPVLNKNIDKWVNQAIHSSELIQNGKALLVT-GI 137

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +    + F  + +   LS IF +            +  +      +++      ++  
Sbjct: 138 KGLSEVGTGFTHVVMAIFLSFIFAVSRGRMMVFGRQFLQSKFKKFFTNVY-----YLTHK 192

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAV 265
              ++        +I     +++   + + G+PS + L +I  I+ ++P  G  IS   +
Sbjct: 193 FVMILGRIIETQLVICTINTILMTIGFMIIGMPSIMVLSIIVFILGLVPVAGVLISMIPL 252

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++     G +     + +   +        L P L+     LP   TF  L+     +G 
Sbjct: 253 TLLGFASGGLIRVVWIIVLVILIHAFESYFLHPRLMADRTDLPVFVTFITLIIMESLLGA 312

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            GL IG  +++    I        +    +I+ 
Sbjct: 313 WGLIIGIPIVSFFLDILGVQNSEPRRVTSQIAK 345


>gi|296132875|ref|YP_003640122.1| sporulation integral membrane protein YtvI [Thermincola sp. JR]
 gi|296031453|gb|ADG82221.1| sporulation integral membrane protein YtvI [Thermincola potens JR]
          Length = 355

 Score = 69.9 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 53/350 (15%), Positives = 117/350 (33%), Gaps = 11/350 (3%)

Query: 11  IMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           I    ++ II+   Y     +  +  P + A ++     P+     SK +       +I+
Sbjct: 5   IKNLFVILIIVSGTYLFYRYILPYIVPFVIAGVLTVFIEPLVRLLQSKAKLPRAPAVIIS 64

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS---ELW 123
            + ++ L    L       + E+ E  S + +  +        L       + S    L 
Sbjct: 65  LILIIGLTGTLLTLFVARLVAELIEFSSSLPMYTEMLAKNIVHLRATAESFYFSLPVSLL 124

Query: 124 TKHLSHPQSLKILSETFLKT--NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
               ++  +++     +L         +               + I   +IA FF  +D 
Sbjct: 125 EFIANNMGTIEKNIGAYLTQLQAFTKEMLNQFIILVSSVPGILVIIFVSLIATFFMAKDR 184

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I      +    + +   ++ + V   +        I+             +   P  
Sbjct: 185 RVIIGFWLRIMPEPWGSKTIQVLKDVSAALFGYARAQLILISITFFNSLIGLAIIDAPYI 244

Query: 242 VALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           + +  +  +  +IP  G    +    I+ +I  N+  A  L +   I + I+ + L   +
Sbjct: 245 LLMAAMIGVFDLIPVLGPGTIYIPWIIWEIINNNVVFAVKLGVV-YIIIVIIRQVLEAKV 303

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           V   + L  L T   +  G++  G LGL +GP+ +  +  + K  I+   
Sbjct: 304 VANAMGLHPLATLISIYVGLQIFGPLGLVLGPLFLIGLKALAKAGIVDWP 353


>gi|293400449|ref|ZP_06644594.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305475|gb|EFE46719.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 363

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 112/325 (34%), Gaps = 29/325 (8%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P+LS +++ F   PI      K             VSVM ++I  L  L  +  + + 
Sbjct: 45  FLPILSGVLLAFFLQPIIDRVQQKFSLK---------VSVMLVYIGLLAILGAFLAVLLP 95

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L  + +   Q    VPRWL  + G +    +   +L+  +   +     +  +    + 
Sbjct: 96  LLYQQALELAQL---VPRWLQQLEGFLKQHHIAYDNLNTLKQNYMQEGYIIAIDSAKSVI 152

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              + +G              I  FF   D     +    +  ++           +  +
Sbjct: 153 DTLTDYG-----------IAYIIAFFISIDMDFWKRTAKKIVPNV--TRVATFYHTLSNI 199

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIY 268
           I     G  +  +   + +G    L   P+ +   +I A++ + P  G         ++ 
Sbjct: 200 IYQYLAGTMLDLLFIIVSVGIVLSLYRFPNALLYAMILALLNLFPYVGATLGLILIAAVA 259

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
            L   +        +W      I    ++P +    + +  L TF  +       G++G+
Sbjct: 260 ALHYDHYPWMMFFIVWS--IQQIESNIIQPLIFNRTMNVRPLLTFVFIFISDAFFGVIGV 317

Query: 329 FIGPVLMALIAVIWKESIMAIKENK 353
            + P+  A+  ++++  + +   +K
Sbjct: 318 ILSPIFAAVAQIVFRSYLHSKTSDK 342


>gi|317133678|ref|YP_004092992.1| sporulation integral membrane protein YtvI [Ethanoligenens
           harbinense YUAN-3]
 gi|315471657|gb|ADU28261.1| sporulation integral membrane protein YtvI [Ethanoligenens
           harbinense YUAN-3]
          Length = 357

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 49/335 (14%), Positives = 113/335 (33%), Gaps = 3/335 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
                 + + +  V + FL G+  P +   +I     P                 ++  +
Sbjct: 14  NTATFTVAIALGAVLVKFLLGWILPFVFGFLIAAAVQPAVRFAHRHWRLPKRAAGLLLAL 73

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI-PVPRWLSDIPGGMWASELWTKHL 127
            ++   +     +    ++    +V ++    Q  +  V      +     +        
Sbjct: 74  LLILGLLGICAVILARLIMTATPMVQQLPQYLQALVNQVNLTTDSLTNSARSVSPVLAQN 133

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                  + +E    +   + +            +    I   I++  FF  D   I   
Sbjct: 134 ISNMMEGLSTELMKVSTYANQLLALGKSLLASLPNVLFGIAVTILSACFFSMDYDIIRGF 193

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L       +     ++ R   + +        ++ +   L L     L  +P+ + + V+
Sbjct: 194 LLRQLPERYTDIAVEVKRYFFRSVGGMARAYALLMLITFLELTCGLMLLRIPNAILVAVL 253

Query: 248 TAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A++ ++P  G        +I  L+ GNI  A  L +  A  +  V   L P +VG  I 
Sbjct: 254 IAVVDILPVLGTGTIMVPWAIITLLFGNIPLAVGLTVLYA-VIATVRTILEPKVVGDRIG 312

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           L  L T F +  G++  G+ G+ + P+++ ++  +
Sbjct: 313 LYPLVTLFAIFLGLKFAGVAGMLLFPLIVLILKRL 347


>gi|251780935|ref|ZP_04823855.1| permease [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243085250|gb|EES51140.1| permease [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 303

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 46/307 (14%), Positives = 112/307 (36%), Gaps = 13/307 (4%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
            I+ +   PI   F SK +      +V+  + ++ LFI  +  +    + E+   +  + 
Sbjct: 4   FILAYIIAPIRDLFQSKFKIKKKVASVLIILIILGLFISCITLVIPELVKEISN-IGVIF 62

Query: 98  LANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFG 157
               + +        +        ++ + +     L +     L  N +           
Sbjct: 63  DNIANFLEDMYIKFRVDSFPILKSIYNELMEKGNILFLNLSKSLFNNIV----------- 111

Query: 158 MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG 217
            + ++  +S   + + +++F  DG  I  +L  +         KKI   + KV+     G
Sbjct: 112 -LIVENIVSCAVIPVVVYYFLCDGDKIYNKLLFILPTEKREVTKKILNDIDKVLGRYITG 170

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFN 277
              ++I  G +      +  V   + + ++ AI+ +IP   PI     ++ + +  +   
Sbjct: 171 QVFLSIIIGFLTFILLIIFKVKFPIWISILNAILNIIPYFGPIFGGVPAVLVALLDSPIK 230

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           A  + +   I   I    L P +      +  +     L+ G +  G +G+ +   +  +
Sbjct: 231 ALWVTIGVFIIQQIEGNILSPKITADSTDMHPVMIIILLLIGDKFGGFIGMLLAVPVGVI 290

Query: 338 IAVIWKE 344
           I V++ +
Sbjct: 291 IKVLYDD 297


>gi|262037961|ref|ZP_06011379.1| conserved hypothetical protein [Leptotrichia goodfellowii F0264]
 gi|261748002|gb|EEY35423.1| conserved hypothetical protein [Leptotrichia goodfellowii F0264]
          Length = 355

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/333 (12%), Positives = 102/333 (30%), Gaps = 16/333 (4%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           S+  + G   P + + +I ++  P         + +      +  +     FI  +L   
Sbjct: 39  SVQIITGTLFPFILSFVIVYSLMPFIDMLNENLKINRKVAISLVLLIFFIFFIYVILAFI 98

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                ++  L+   +   ++                      ++  + +   I S+  + 
Sbjct: 99  PLVAGQLSSLIEFFIKNQENLQ------------KNLISFMAQNNINIRDSIINSKEVIF 146

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           TN +  +    S        +        I L F Y    +I + + +L        W  
Sbjct: 147 TNFLKVLNSSVSLL-TGTFSFLFMTPIFTIMLIFSY---DNIDEGIKNLLRKFDREEWIP 202

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           + + +   I        + ++  G+     ++   +       +I     +IP   P   
Sbjct: 203 LIKQMDDAIGKYIKVTVLDSLIVGICSYVIFFFLKMEYSSLFSMIIGAGNVIPFIGPFIG 262

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
               I      +      + +   I   I    ++P+L    + +  + T   ++ G   
Sbjct: 263 LIPVILYAATKSFKLVVIIIVLITILQTIEANIIKPWLTSKSVDIHPITTLLVVLIGGAL 322

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            G+ G FI   +  ++ +        +K NKE 
Sbjct: 323 FGIGGAFIAIPVYIVLKLGVIFYFEKLKFNKEN 355


>gi|229818431|ref|ZP_04448712.1| hypothetical protein BIFANG_03738 [Bifidobacterium angulatum DSM
           20098]
 gi|229784301|gb|EEP20415.1| hypothetical protein BIFANG_03738 [Bifidobacterium angulatum DSM
           20098]
          Length = 535

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 40/310 (12%), Positives = 100/310 (32%), Gaps = 15/310 (4%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           +L AL +     P+  + +S         A+++   V+    V LL      + ++  L 
Sbjct: 83  ILIALFLALAIEPMVKALVSH-GWKRGVAALLSFTVVIVAACVLLLLFGNMFIQQVIALF 141

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
           S +    +                +  + ++  L    +L       ++++ +      A
Sbjct: 142 SGLPDMYEQT------------RQFIMQRFSFVLPEIDNLGPEILKNIQSSWVSDFAGQA 189

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
                      + +  +I+  F+    G  + + +              +  +    I S
Sbjct: 190 LHTVSGVSAAFIDVTTVIMVTFYISAAGPKLRRSVCQWFAPSAQRRILTVWTVAQDQISS 249

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA-MIPGGAPISFTAV-SIYLLI 271
                T++A+      G+   +  VP  + L + + I++  IP        A   ++   
Sbjct: 250 FLFSRTVLAVLNAACTGAFLVIMKVPYWLPLALFSGIVSQFIPMIGTFVGGAAPVLFACA 309

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
              +     + ++  +   I +    P +    + +     F  ++      G +G F+ 
Sbjct: 310 NNGLGVGIAVIVFITVYQQIENFIFLPKISQRTMDINEAVAFISVLFFGSLFGAVGAFLA 369

Query: 332 PVLMALIAVI 341
             + A I VI
Sbjct: 370 LPIAASIQVI 379


>gi|114626082|ref|XP_520176.2| PREDICTED: similar to chromosome 9 open reading frame 5 isoform 2
           [Pan troglodytes]
          Length = 865

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 9/190 (4%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDG---FSISQQLDSLGEHLFPAYWKKIS-RIVPKVIR 212
           G   L++ LS+I  +  LF+        +   + + SL     P     I  + V + IR
Sbjct: 649 GTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIR 708

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI 271
             F     +A   GL     + + G+        + AI+  +P  G   +     + L +
Sbjct: 709 GVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWL 768

Query: 272 KGNIF-NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +   A  L ++  +  + VD  +   + GG        T   + GG   +GL G  I
Sbjct: 769 TQGLGCKAILLLIFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAII 825

Query: 331 GPVLMALIAV 340
           GP+L+ ++ V
Sbjct: 826 GPILLCILVV 835


>gi|108761836|ref|YP_631086.1| hypothetical protein MXAN_2875 [Myxococcus xanthus DK 1622]
 gi|108465716|gb|ABF90901.1| putative membrane protein [Myxococcus xanthus DK 1622]
          Length = 397

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 48/317 (15%), Positives = 111/317 (35%), Gaps = 18/317 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
            + +++ +   +L  +      +   L++     P+              +A++A   + 
Sbjct: 22  TQVLLLILCWAALRAVYPVLTLLAVVLLLSIALSPLVRRLTQWGLPRGAGVAIVALALLG 81

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + ++ +  L    + +++ LV            +P  L  +     A   W + LS   
Sbjct: 82  MMGVL-VGSLVPMLIHQLQGLVQS----------MPAMLERL-----AQSRWVEELSTRY 125

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            +++ +E  ++    D   R  +            I  +++ +F     G  + +     
Sbjct: 126 GVEVQAEDLIRFEPTDVAGRLINVLSSTLGLVAGGITVVVLTVFSLLF-GEDLYESTIQW 184

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                    + +   + K + +   G  ++    G V  +   + GVP  + LG++  +M
Sbjct: 185 VSPRRRPRVRLLMSRMRKAVANYLAGTLLVMTIGGTVAATIALIQGVPYFLPLGLMVMMM 244

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            +IP  G+ IS   V +  L    + +A    +   +   I    L P +    IK+  L
Sbjct: 245 GVIPYLGSIISAVLVGVITLAAVGLKDALIAVVVFIVYQQIESNVLGPMIQRRAIKMNPL 304

Query: 311 PTFFGLVGGVRTMGLLG 327
                ++ G    GL G
Sbjct: 305 LISIVVLCGGALAGLPG 321


>gi|254483129|ref|ZP_05096363.1| conserved domain protein, putative [marine gamma proteobacterium
           HTCC2148]
 gi|214036651|gb|EEB77324.1| conserved domain protein, putative [marine gamma proteobacterium
           HTCC2148]
          Length = 363

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 57/346 (16%), Positives = 117/346 (33%), Gaps = 12/346 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  +   + ++  +++ I +  L  +    AP+L+++++ +      S   S        
Sbjct: 10  RTYLFEEESVLLLVLLAISVALLVTIGDILAPLLASIVLAYLMQGFSSQLQSH-GAPPWL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              ++    +  F    L L      ++  L S++      G  +   L +    ++ ++
Sbjct: 69  GLALSYGVFIGAFFGFTLGLLPLVWRQLMALASELPRYLDQGRQLLSVLPERYPEIFTAD 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              + +   Q         L T  +  +P              + +I + + +FFF RD 
Sbjct: 129 QINELVGMAQLEAANMGQMLVTRSLASLP--------GLFTVMVYMILIPMLVFFFLRDR 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I   L        P   ++I   + +   +   G  +  I  G V  +A+   G+   
Sbjct: 181 EQILDWLAKFLPEKRPLL-RRIWGEMNQQFANYARGKVLEIIVVGSVSYAAFAWMGLNYA 239

Query: 242 VALGVITAIMAMIP-GGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             LG++  +  +IP  GA +    V  +     G       LF    +   +    L P 
Sbjct: 240 ALLGLLVGLSVIIPYIGAALVTLPVIFVGFFQWGFTTEFYTLFAVYVVIQGLDGNVLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           L    + L  +     ++      GL G+F    L  LI  I    
Sbjct: 300 LFSEAVNLHPVAIILAILFFGGIWGLWGVFFAIPLATLIKAIINSW 345


>gi|99081696|ref|YP_613850.1| hypothetical protein TM1040_1855 [Ruegeria sp. TM1040]
 gi|99037976|gb|ABF64588.1| protein of unknown function UPF0118 [Ruegeria sp. TM1040]
          Length = 380

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 53/368 (14%), Positives = 124/368 (33%), Gaps = 29/368 (7%)

Query: 4   TMLNPQGIMRWMIMFIILVSL-YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
            +   + +  W I  ++   + + L     P +    I +   P+               
Sbjct: 2   ALPARKQLKYWGIAAVLFAVVMWALGNVLMPFILGGAIAYIIDPLADRLERAGLSREGAT 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           AVI   +V+   I+ LL +    + +M +LV  +  A  +     +     P     +  
Sbjct: 62  AVITVGAVLIFLIL-LLLIVPALINQMIDLVQTLPQALSNLRAFAQ--ERFPSLFEDNSQ 118

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             + L+            ++   +  +  F     M  L+  + ++ + +   +   D  
Sbjct: 119 LREALAGLW-------QIIQDKSVTLLQTFVGS-AMSLLNIVVLLVIVPVVAVYLLVDWD 170

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +  ++D L         + ++  + +V+ S   GM ++ +  G     A  L G+   +
Sbjct: 171 RMVARIDELLPRDHAPVVRHLASEIDRVLSSFIRGMGLVCVILGTYYAVALMLVGLNFGL 230

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIF---------------NATCLFLWGAI 287
           A+G +  ++  IP    I    ++I L +                          + G  
Sbjct: 231 AVGFVAGLVTFIPYLGAIIGGVLAIGLALFQFWGALEGADGEMIRQGTDWLRIALVAGIF 290

Query: 288 ELFIV--DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            +  +     L P LVG  + L  +     L       G +G+ +   + A+I V+ + +
Sbjct: 291 AIGQMVEGNFLTPKLVGNSVGLHPVWLLLALSVFGALFGFVGMLVAVPVAAVIGVVARFA 350

Query: 346 IMAIKENK 353
           +     ++
Sbjct: 351 VEQYLHSR 358


>gi|326391989|ref|ZP_08213490.1| protein of unknown function UPF0118 [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325991974|gb|EGD50465.1| protein of unknown function UPF0118 [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 336

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 51/343 (14%), Positives = 124/343 (36%), Gaps = 20/343 (5%)

Query: 16  IMFIILVSLYFLKGFF----------APVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           ++F+I+ ++  L  F           +P L   +I +   P+      K   S  F   +
Sbjct: 3   LLFLIIGAIGLLYFFIKNWVSIKNILSPFLFPSLIAYLLNPM-----VKFFNSKGFSTFL 57

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           + + V  +  + +LF  +Y    +  L++++V+  +      + L  I   +  +     
Sbjct: 58  SILLVFLIVALVILFFSFYI---LPLLINEIVIFVKMIPFYTKELQKILIQLKFNYFSYL 114

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                + L                  F S      L   + +I + I  F+  +D     
Sbjct: 115 PPQFEKVLDKNLNALNNLFASRVDLVFKSTVA--ILKDIIDVIIVPIITFYLLKDKNVFE 172

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           ++++ +    +   +  + + + K++         ++I   +       L  V     +G
Sbjct: 173 KEIERMIPSKYHDSFFALLKKIDKILSKYIRAQIYLSIFVAIFTSIGLSLIKVKYAFLIG 232

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++  I+ +IP   PI     ++ + +  ++       L   +   I +  + P ++   +
Sbjct: 233 ILAGILNIIPYIGPILSIIPAVLIGLLDSLSKGFWALLVCLLVQQIENAFITPKIISDSV 292

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            L  +   F L+ G    G+ GL +   ++A+  VI  E  + 
Sbjct: 293 GLHPITVIFSLIAGEELFGVWGLLLSVPVVAIGKVIVTEIFIE 335


>gi|299530278|ref|ZP_07043703.1| putative GAF sensor protein [Comamonas testosteroni S44]
 gi|298721649|gb|EFI62581.1| putative GAF sensor protein [Comamonas testosteroni S44]
          Length = 808

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 51/346 (14%), Positives = 115/346 (33%), Gaps = 10/346 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           + E +   + ++  MI  I++++LYF +    P+  A++ GF   P  S    K+     
Sbjct: 16  LAEMLPALRLLIGLMIASIVILALYFGRDMLIPLALAMLFGFLLDPAVSKL--KRWGLPR 73

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP----GG 116
             + I  V+     +  L       + ++   +       +  +   R  +++P    G 
Sbjct: 74  MASAIVVVAFSLAALGGLGMYLGSQVQQLSADLPTYQSTIRDKLRSLRKSANMPSAWDGV 133

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
                   K ++   S +   +                ++     +   +   +++ +  
Sbjct: 134 FKTYNTVEKEIASVDSARARVQKVEVQPPESKPTTRMLQWLGRIAEPVTTAGIVLLFVIL 193

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
              D   +  +L  L           +     + I        I+ +  G+ L     L 
Sbjct: 194 ILLDRDELRDRLLRLVGGNLNVATDALDE-ASQRIGKYLRMQFIVNVSYGVPLAMGLLLI 252

Query: 237 GVPSHVALGVITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           GVP  +  GV+ AIM  +P   P+  +   +++   +  +            +   I + 
Sbjct: 253 GVPGAILWGVLGAIMRFVPYVGPMMSAVFPLALAFAVDPSWDMFLMTLGLILLLELISNN 312

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIA 339
            + P+L G    L  L             G +GL +  P+ + L+ 
Sbjct: 313 VIEPWLYGSSTGLSTLSIIVAATFWTALWGPIGLILSTPLTVCLLV 358


>gi|114329061|ref|YP_746218.1| hypothetical protein GbCGDNIH1_2397 [Granulibacter bethesdensis
           CGDNIH1]
 gi|114317235|gb|ABI63295.1| hypothetical membrane spanning protein [Granulibacter bethesdensis
           CGDNIH1]
          Length = 678

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 52/169 (30%), Gaps = 2/169 (1%)

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
             S   + I   F       +  ++  L                   +   FL    +  
Sbjct: 234 LASTGIVFIVAIFMLMRLEDLRDRMIRLFGSSDLHRTTLAMDDAASRLSRYFLAQLGLNA 293

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
             GL+ G   W+ GVPS    GVI  +M  +P           I L    +   +  L+ 
Sbjct: 294 AFGLITGLGLWMIGVPSPALWGVIAGLMRFVPYIGTPLAAIPPIALAAAVDPGWSMALWA 353

Query: 284 WGAIEL--FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            G   +   ++ + + P L G    L  L      +      G +GL +
Sbjct: 354 AGMFLVAESLMGQVVEPLLYGHSTGLSPLAVMLSAIFWTWLWGSIGLIL 402


>gi|254417043|ref|ZP_05030790.1| conserved domain protein, putative [Microcoleus chthonoplastes PCC
           7420]
 gi|196176210|gb|EDX71227.1| conserved domain protein, putative [Microcoleus chthonoplastes PCC
           7420]
          Length = 339

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/344 (12%), Positives = 117/344 (34%), Gaps = 11/344 (3%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++   +  + +  L+ +K       +A++   T   +   F+ +      F  +I+   
Sbjct: 5   SLLGLFLFILSVYILWKIKTVILLGFAAVVFATTLNRL-VRFLLRFRLKRAFAIIISVGF 63

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + L     + +    + ++++L+  V +  Q       W+ ++       +     +  
Sbjct: 64  CLGLLSGFFVLVVPPFIDQVQQLIDLVPIGLQQIPEWANWVRNLVPDGLLDD-----IGG 118

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                    +++     +F   F S  G++     + ++ ++        +     +   
Sbjct: 119 LNVFTQNLRSWVTKLFGNFFDIFYSSIGLVLNMLLVVVVTIM-----LLANPEPYRRGFI 173

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L    +    ++I       +    +G+        ++ G   W+  V   +A G++  
Sbjct: 174 LLFPAFYRRRIQEILDECEDTLGGWAVGILFNMTVIAILSGLGLWILQVQLPLANGLLAG 233

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I   IP   P       + L +  + + A  + +   +   I    L P ++   + L  
Sbjct: 234 IFTFIPNLGPTLSVIPPVALALLDSPWKALAVVILYIVIQQIESNILTPLVMQKQVSLLP 293

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             T    +      G+ GLF+   ++ +  V  KE ++    NK
Sbjct: 294 AVTLLSQMAFAIFFGIFGLFLALPIVVVAQVCLKEVLVKDILNK 337


>gi|304397899|ref|ZP_07379775.1| protein of unknown function UPF0118 [Pantoea sp. aB]
 gi|304354610|gb|EFM18981.1| protein of unknown function UPF0118 [Pantoea sp. aB]
          Length = 351

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 48/337 (14%), Positives = 121/337 (35%), Gaps = 22/337 (6%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              +++  ++ IIL  +        P+L A        P+ +  + +          +  
Sbjct: 11  QNILIKLAMLVIILAGVRAASDILVPLLLAAFFAIVLNPLVTMLMRR-GFRRGLAIGLVI 69

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             + C  ++ L  +    M E  +L  ++    +  + V                  +HL
Sbjct: 70  TVIFCALVL-LGAIIASSMSEFSDLYPQLRATMEQKMTV-----------------LQHL 111

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +    + I ++  ++    + +   AS     F     + + +++ + F   +   +  +
Sbjct: 112 AAGFHINISTDALVQRFDPNTMMNLASVALSGFSGAMTNTVLLVLTVVFMLFEVHHLPYK 171

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + +    + P           K +       T++++  G+ +  + +L  V   +  GV+
Sbjct: 172 MRNAL--VNPKIRIAGLHKALKGVTHYLALKTLVSLITGIAVWLSLYLLDVKFALLWGVV 229

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             I+  IP  G  I+     +  L+  ++F+A  +         +    L P L+G  + 
Sbjct: 230 AFILNFIPNIGPIIAGIPPLLQALLLNSLFDAAMVAALFTAIHMVFGNMLEPRLMGRGLG 289

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L  L  F  LV     +G +G+ +   L ++  ++ +
Sbjct: 290 LSTLVVFLSLVFWGWLLGPVGMLLSVPLTSITKILME 326


>gi|218896894|ref|YP_002445305.1| hypothetical protein BCG9842_B3416 [Bacillus cereus G9842]
 gi|218541176|gb|ACK93570.1| putative membrane protein [Bacillus cereus G9842]
          Length = 337

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 55/341 (16%), Positives = 122/341 (35%), Gaps = 25/341 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +G  R++++ I+ + LY LK     +L   I+ F           + + +   +    
Sbjct: 9   RSRGFQRFLVLIIVALVLYALKSMINLILITFILTFLMDRFQRFISRELKVNRKIVIACL 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++      L        +++ +L+ +  L  Q+           P      +     
Sbjct: 69  YIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQN-----------PPDNEIVKYVLST 117

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           ++  +  K + +      G+D I +  +  G + L   LS+I  +  L     +   I  
Sbjct: 118 INGMEVSKYIEQ------GVDVIYQSIANIGKVSLQILLSLILSLFFL----LEKERIIT 167

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 +     ++++I+    +  RS         +IA+   ++   A  + G P  + 
Sbjct: 168 FTSKFKDSKLKIFYEEIAYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLLV 227

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L V+  ++ +IP  G  IS   + I     G +     + ++  +   +    L P  + 
Sbjct: 228 LAVMVFLLGLIPVAGVIISLFPLCIIAYNVGGVMYVVYILVFITVIHALESYFLNPKFMS 287

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               LP   TF  L+     +G+ GL IG  +   +  +  
Sbjct: 288 AKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLD 328


>gi|149374547|ref|ZP_01892321.1| hypothetical protein MDG893_10881 [Marinobacter algicola DG893]
 gi|149361250|gb|EDM49700.1| hypothetical protein MDG893_10881 [Marinobacter algicola DG893]
          Length = 357

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 103/332 (31%), Gaps = 9/332 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +    IL +LY       P++ A++     +P+      K        +++  + V+   
Sbjct: 20  LFALGILYTLYVAHQIVLPIVLAVLTSLLLFPLVKKAYDKAGIPRALSSLVLMIVVI--- 76

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
                 L   G       +     A Q    +    S I   +       K +       
Sbjct: 77  ----AGLAGVGAAVATPALEWAQQAPQGISRLLMGESGIKNQIDKVNESAKKVEESMDEL 132

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
              E       +     + ++      +    +   +   +F    G  I          
Sbjct: 133 SKDEKTTTNTVVLKTDSWRNQLLTKARNGAAGLALALALTYFLLVGGDRIILNFVRQLPK 192

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                  +I+R   + I      +++  +  G+  G   W  G+P     G++  +   I
Sbjct: 193 RQRRNVLQIARDSQQQIAQYLAVLSLSNLLVGITTGLICWAVGLPDPAVWGLVAGLARFI 252

Query: 255 P-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLVGGPIKLPFLPT 312
           P  G  ++   +++      +      +   G + L   V   + P++ G  + +  +  
Sbjct: 253 PYLGVILTIILLAVVSATSLDTLWTMAIAPLGYLALTSTVGFFIEPWIHGFRMAINPVVI 312

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           F  +       G +G+ +   LM +I V+ K+
Sbjct: 313 FVSIFFWGWLWGPVGVLLAVPLMTIIQVVLKQ 344


>gi|188589458|ref|YP_001920393.1| putative domain of unknown function [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188499739|gb|ACD52875.1| putative membrane protein [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 382

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 117/327 (35%), Gaps = 5/327 (1%)

Query: 24  LYFLKGFFAPVLSALIIGFT--SWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
           +   + F      A I+ F    +    +  SK +       V   ++ M L  + + F+
Sbjct: 44  IVIFQPFIIGFSIAYILNFILKFYEKKLNVHSKLKSKRGLGLVFTYITAMLLIGLFIQFV 103

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               +  +  LV+ V           ++++ +   +  SE +   +++  +  I     +
Sbjct: 104 LPQLIQSIIGLVNDVPKFINEST---KFINKLMLDLNISEEYLPLINNNFNEFINYIIKI 160

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            TN +  +  F ++      +  L +I  I  L    +      +   ++          
Sbjct: 161 ATNLLPVLGGFVTKIASSIWNIVLGVIISIYLLIDKEKFCAMSKKVTYAIFYKNAAEKII 220

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +I+           +G  + +   G++      +  +P  + + VI  I  +IP   P  
Sbjct: 221 EITHRSNDTFGKFLMGKILDSFIIGILTFVILTIFRMPYAILISVIIGITNIIPFFGPFI 280

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               S  +++      A    +   +   I    + P ++G  I +      F ++   +
Sbjct: 281 GAIPSFIIILFVAPVKALWFLVIILVIQQIDGNIIGPKILGDSIGISAFWILFSILFAGK 340

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMA 348
            +GL+G+ IG  L A++  I KE + A
Sbjct: 341 FLGLIGMIIGVPLFAVVYSIIKEIVEA 367


>gi|255527126|ref|ZP_05394013.1| protein of unknown function UPF0118 [Clostridium carboxidivorans
           P7]
 gi|296186586|ref|ZP_06854989.1| membrane protein, putative [Clostridium carboxidivorans P7]
 gi|255509177|gb|EET85530.1| protein of unknown function UPF0118 [Clostridium carboxidivorans
           P7]
 gi|296049033|gb|EFG88464.1| membrane protein, putative [Clostridium carboxidivorans P7]
          Length = 383

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 78/194 (40%)

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
           +++ L +IF I  L      G    + L +  +        +I ++      +   G  I
Sbjct: 186 VEFILGVIFAIYILAQKRSLGIQFKKLLYAFMKKEKVDSILEILKLTNLTFSNFITGQCI 245

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC 280
           +A   G++      L  +P  + + V+   +++IP        ++ + L++  N   A  
Sbjct: 246 VAAILGIMFFIIMMLLSMPYALMISVLICSLSIIPVLGSAIGCSLGVILILMVNPIKAGV 305

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
             +   +   I D  + P +VG  + LP +     +  G +  G+ G+ I   + ++  V
Sbjct: 306 FLIVFLLIKQIEDNFIYPKVVGESVGLPAIWVLVAITLGGKISGVAGMIIFIPMFSVAYV 365

Query: 341 IWKESIMAIKENKE 354
           + ++ +    + K+
Sbjct: 366 LLRKEVYIRLKGKD 379


>gi|168214258|ref|ZP_02639883.1| putative domain of unknown function [Clostridium perfringens CPE
           str. F4969]
 gi|170714314|gb|EDT26496.1| putative domain of unknown function [Clostridium perfringens CPE
           str. F4969]
          Length = 345

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 53/322 (16%), Positives = 115/322 (35%), Gaps = 19/322 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
            +     VL + I  +   P+Y     + + +  FLA+   +SV+ L +  L  L     
Sbjct: 34  FRDIIFIVLVSGIFAYILKPLYRFLCERTKINKNFLAMSIVLSVIFLILFFLTVLIPSMF 93

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E +     +            +++D+   M   EL             + E  +     
Sbjct: 94  KEGESFDGLINGIEF-------FINDLIMKMKFMEL---------GFFDVIEAQVTEKLN 137

Query: 147 DFIPRFASRFGMIFLDY---CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             +  FA+      + +    L+   + +  ++F   G  +S +          A  K +
Sbjct: 138 ILLVSFATSIINNLISFSENILAFAVIPVLAYYFLAYGDLLSNKFLYCCPMEKRALLKNL 197

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
            R V KV+    LG  ++++  G++      + G+   + L  + A++ +IP    +   
Sbjct: 198 GRDVDKVLGKYILGQLLLSLLVGVMTFIGMLILGIKFPLLLAFLNALLNIIPYFGAVLGA 257

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             +I + +         + L   I   I    + P +    I +  +     L+ G +  
Sbjct: 258 IPAIVVALVEGPNKILWVILTFLIIQQIEGNLIAPKITAESIDMHPILIIILLLIGDQIG 317

Query: 324 GLLGLFIGPVLMALIAVIWKES 345
           GLLG+     +  +I V++ + 
Sbjct: 318 GLLGMIFIVPIAVVIKVLFDDW 339


>gi|298346096|ref|YP_003718783.1| hypothetical protein HMPREF0573_10970 [Mobiluncus curtisii ATCC
           43063]
 gi|304390145|ref|ZP_07372099.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|298236157|gb|ADI67289.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 43063]
 gi|304326627|gb|EFL93871.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 469

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 58/330 (17%), Positives = 110/330 (33%), Gaps = 27/330 (8%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           I+  L  + G F P   A  +     P     I  +       A++  V +  +  + L 
Sbjct: 64  IIFLLSLIAGVFMPTFLAFSLALAVRPASEWLIRHRWP-VGLAALVNIVLLFAILFIMLG 122

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            +       + EL              PR+      G     L+   ++        +  
Sbjct: 123 LIAIAITAMVTEL--------------PRY------GAKFQALYEHAINQLDRRGFDTSA 162

Query: 140 FL---KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            L   K   I+ +  + S F         ++ F+I+   F   D   + ++   L  +  
Sbjct: 163 VLDSWKNVDINRVFSYLSGFANQISGAGTTLFFIIMVAIFVVGDTVVVRRRAAELASYAP 222

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
              +    R     +R+ FL  T+      LV     +  GVP+    G++  +   IP 
Sbjct: 223 G--FAIALRNFSLRVRTYFLMTTVFGAVVALVDVGILYAFGVPTPWTWGILAFVANYIPA 280

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G  +S     +  L    ++ A  +F+   +   +    L+P + G  + L    +F  
Sbjct: 281 VGFILSMIPPILLALALDGVWPAVGVFIGYMVASLLFLNILQPRIAGNAVGLNATVSFLS 340

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           L+     MG LG  +   L      I+ +S
Sbjct: 341 LMVWSTVMGPLGAILAVPLTLFFKAIFVDS 370


>gi|164688257|ref|ZP_02212285.1| hypothetical protein CLOBAR_01902 [Clostridium bartlettii DSM
           16795]
 gi|164602670|gb|EDQ96135.1| hypothetical protein CLOBAR_01902 [Clostridium bartlettii DSM
           16795]
          Length = 391

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 61/348 (17%), Positives = 121/348 (34%), Gaps = 10/348 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I  I    L  ++ F      A I+        +    K       L+++ T  +  L I
Sbjct: 48  IFGIFTNILSIVEPFLVGATIAFILSI----PMNFLERKFPRLKRPLSLLLTFLIFILVI 103

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + L+FL    +++    +   V  +   +      ++I    W  +         QS+  
Sbjct: 104 LVLVFLIGPKLIDTITNIVNTVPESVESLRKLLQDTNINW-DWVQDYLASIEIDWQSISN 162

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              +F K +                +   +S I   I   +       +S QL  L    
Sbjct: 163 KVLSFFKDSFSSLF-TSTFGVVTGVVSTIISTIISFIFAAYILISKEKLSVQLKKLLYAF 221

Query: 196 FPAYWKKISRIVPKVIRSTFLGMT----IIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
            P         V K+   TF        I  +  G +      +  +P  + + V+  IM
Sbjct: 222 LPEKIVDKMVEVGKLTHKTFTNFFTYQCIECLILGSMFFVTMVILKIPYALLISVMITIM 281

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           A+IP         ++  L++  N        +  A+   I    + P +VG  I LP + 
Sbjct: 282 ALIPIFGLCIAFIIASILIVMVNPIKVIVFAILFAVLQQIEGNLIYPRVVGKSIGLPPIW 341

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             F +  G + MG++G+ +   L ++I  + ++S+    +N++  +  
Sbjct: 342 VIFVITLGSKLMGIVGMILFIPLSSVIYTLLRKSVYKRIQNRKIPNDK 389


>gi|88802618|ref|ZP_01118145.1| hypothetical protein PI23P_08510 [Polaribacter irgensii 23-P]
 gi|88781476|gb|EAR12654.1| hypothetical protein PI23P_08510 [Polaribacter irgensii 23-P]
          Length = 360

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 115/343 (33%), Gaps = 20/343 (5%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +F+    L+ ++     ++ A I+   + P+     ++ +  +T   +   + ++     
Sbjct: 20  IFLCGAFLFTIQSVIFYIIIAGILSLIARPVILFLCTRLKFPNTLAVIFTMLLLLSFLSG 79

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            ++        + K L    V   Q  +               +E+ +  LS    +   
Sbjct: 80  LIVLFIPLIAEQGKSLSLLEVDDLQASVQ-----------EIYAEINSYFLSKGIDVLNE 128

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +          IP F +          + +  ++   FFF +D   +   + +L     
Sbjct: 129 LKNIDLLASFKEIPNFLNAVLEAIGSLSVGLFAVLFISFFFMKDRHLLKNGMMTLIPTGK 188

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
              + K    +  ++   F+G+                +  + + + +  + A++ +IP 
Sbjct: 189 EGRFSKSLEAINSLLSRYFIGLLSQITILYFFYALILLVFDIDNALVIAFLCALLNLIPY 248

Query: 257 GAPISFTAVSIYLLIKGNIF--------NATCLFLWGAIELFIVDKTL-RPFLVGGPIKL 307
             PI    +   L +  NI           +   L+  +   +VD  + +P +     K 
Sbjct: 249 VGPIIGAVIMFILSMTSNIGLDFQTEMLPTSIWILFWYLMAQLVDNFVSQPLIFSKTTKS 308

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             L  F  +V G    G+LG+     +   + VI KE +   K
Sbjct: 309 HPLEIFLIIVIGGLLFGILGMIAAVPMYTALKVILKEFLSDNK 351


>gi|264677725|ref|YP_003277631.1| GAF sensor protein [Comamonas testosteroni CNB-2]
 gi|262208237|gb|ACY32335.1| putative GAF sensor protein [Comamonas testosteroni CNB-2]
          Length = 808

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 50/346 (14%), Positives = 115/346 (33%), Gaps = 10/346 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           + E +   + ++  MI  I++++LYF +    P+  A++ GF   P  S    K+     
Sbjct: 16  LAEMLPALRLLIGLMIASIVILALYFGRDMLIPLALAMLFGFLLDPAVSKL--KRWGLPR 73

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP----GG 116
             + I  V+     +  L       + ++   +       +  +   R  +++P    G 
Sbjct: 74  MASAIVVVAFSLAALGGLGMYLGSQVQQLSADLPTYQSTIRDKLRSLRKSANMPSAWDGV 133

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
                   K ++   + +   +                ++     +   +   +++ +  
Sbjct: 134 FKTYNTVEKEIASVDNARARVQKVEVQPPESKPTTRMLQWLGRIAEPVTTAGIVLLFVIL 193

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
              D   +  +L  L           +     + I        I+ +  G+ L     L 
Sbjct: 194 ILLDRDELRDRLLRLVGGNLNVATDALDE-ASQRIGKYLRMQFIVNVSYGVPLAMGLLLI 252

Query: 237 GVPSHVALGVITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           GVP  +  GV+ AIM  +P   P+  +   +++   +  +            +   I + 
Sbjct: 253 GVPGAILWGVLGAIMRFVPYVGPMMSAVFPLALAFAVDPSWDMFLMTLGLILLLELISNN 312

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIA 339
            + P+L G    L  L             G +GL +  P+ + L+ 
Sbjct: 313 VIEPWLYGSSTGLSTLSIIVAATFWTALWGPIGLILSTPLTVCLLV 358


>gi|291619296|ref|YP_003522038.1| YhhT [Pantoea ananatis LMG 20103]
 gi|291154326|gb|ADD78910.1| YhhT [Pantoea ananatis LMG 20103]
 gi|327395624|dbj|BAK13046.1| UPF0118 inner membrane protein YhhT [Pantoea ananatis AJ13355]
          Length = 351

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 52/344 (15%), Positives = 129/344 (37%), Gaps = 22/344 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +++  +    +++  ++ IIL  +        P+L A        P+ +  + +      
Sbjct: 4   LQQEKIGQNILIKLAMLVIILAGIRAASDILVPLLLAAFFAIVLNPLVTILMRR--GLRR 61

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            LA+   ++V+ + I+ L  +    M E  +L  ++    +  + V              
Sbjct: 62  GLAITLVITVIFIVILLLGAILASSMSEFSDLYPQLRTIMEKKMAV-------------- 107

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
               +HL+    L I ++  ++    + +   AS     F     + + +I+ + F   +
Sbjct: 108 ---VQHLAASIHLNISTDALVQRFDPNTVMNLASVALSGFSGAMTNTVLLILTVVFMLFE 164

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +  ++ +    + P           K +       T+I++  G+ +    +L  V  
Sbjct: 165 VHHLPYKMRNSF--VNPKIRIAGLHKALKGVTHYLALKTLISLITGIAVWLTLYLLDVKF 222

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  GV+  I+  IP  G  I+     +  L+  ++F+A  +         +    L P 
Sbjct: 223 ALLWGVVAFILNFIPNIGPIIAGIPPFLQALLLNSVFDAAMVAALFTAIHMVFGNMLEPR 282

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           ++G  + L  L  F  L+     +G +G+ +   L ++  ++ +
Sbjct: 283 IMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTSITKILME 326


>gi|217978311|ref|YP_002362458.1| protein of unknown function UPF0118 [Methylocella silvestris BL2]
 gi|217503687|gb|ACK51096.1| protein of unknown function UPF0118 [Methylocella silvestris BL2]
          Length = 653

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 45/364 (12%), Positives = 107/364 (29%), Gaps = 27/364 (7%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R+       +   MI  + +++LY  K  F P+  A+++ F    +    + +   +   
Sbjct: 16  RDATRTLDTLATLMISALCILALYVAKSVFVPIAIAVLLSFVLS-LPVRLLRRIGLNRVV 74

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +I  ++ + +       +      ++ EL   +             L ++       E
Sbjct: 75  AVLIVVIASLAV----TFAISAALTRQVTELAVDLPKYQATITSKAGSLREMVFANGLME 130

Query: 122 LWTKHLSHPQSLKILSETF-------------------LKTNGIDFIPRFASRFGMIFLD 162
                     +L    +                     ++      +    +  G     
Sbjct: 131 KGASIFKGLGALGQKKDDAASAPPALGRGDEPRPIPVEVREAEPSPLSMLQTIVGTALSP 190

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
                I +I  +F   +     ++ +  +G          ++    ++ R       + A
Sbjct: 191 LETIAIVVIFVIFILLQREDLRNRFISLVGTRDLQRTTVAMNDAAGRLSRFFLAQTLLNA 250

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF--TAVSIYLLIKGNIFNATC 280
              G+V+    +  GVP  +  G+I  +M  +P    I      V++   +      A  
Sbjct: 251 AF-GVVVAVGLYAIGVPGPLLFGMIGFLMRFVPYIGAIVAAGLPVALAAAVDPGWTMALE 309

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
                 +    V + + P L G    L  +             G +GL +   L   + V
Sbjct: 310 TLALFLVLELAVGQFIEPLLYGRNTGLSPIAVVVAATFWTWLWGPIGLVLATPLTVCLVV 369

Query: 341 IWKE 344
           + + 
Sbjct: 370 LGRH 373


>gi|116333210|ref|YP_794737.1| permease [Lactobacillus brevis ATCC 367]
 gi|116098557|gb|ABJ63706.1| Predicted permease [Lactobacillus brevis ATCC 367]
          Length = 347

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 55/334 (16%), Positives = 120/334 (35%), Gaps = 23/334 (6%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           +  + ++++  +  + F +  L  +I  +           +         ++  +  + +
Sbjct: 17  YFALILLIILAWNARAFLSLALFTIIFIYLGNAATMGLEHRLHVHHLIATLLVYLIFLGI 76

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +     +    + E+  L + +         +   L+           W K+L+   S+
Sbjct: 77  LVAAFAQIIPPLVTEVSRLPNTLKELVTTYPQLETTLTR----------WIKNLTQNASV 126

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
               +T L T+GI  + RF+S    + L +  S IF +            +   + +  +
Sbjct: 127 INNGKT-LFTSGIVKLSRFSSGVETVILAFFFSFIFNLTKT--------QLRHFVHAFTK 177

Query: 194 HLFPAYW---KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
             F   +    ++      +  +      +I     +++    WL G+PS + LG++   
Sbjct: 178 SRFSRLFVPMGELILKFVTIFGTVIETQLMICSINTVLMVIGLWLVGMPSLLILGIMVFF 237

Query: 251 MAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           + +IP  G  IS   ++I   I G I     + +   +        L P L+     LP 
Sbjct: 238 LGLIPVAGVLISLIPLTIIAFISGGILRLAAVLVLVILIHLFESYFLHPRLMANATNLPI 297

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             TF  L+   R  G  GL +G  L+A    ++ 
Sbjct: 298 FVTFITLIVSERLFGAWGLIVGVPLVAFFLEVFD 331


>gi|297538926|ref|YP_003674695.1| hypothetical protein M301_1740 [Methylotenera sp. 301]
 gi|297258273|gb|ADI30118.1| protein of unknown function UPF0118 [Methylotenera sp. 301]
          Length = 386

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 50/348 (14%), Positives = 119/348 (34%), Gaps = 8/348 (2%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
            +++      +  +    ++ +L + + F   +L  +++ +T  P+       K      
Sbjct: 23  NDSIQVKNVALVILTTIAVIFALDWAQNFVITLLFGILLSYTLNPLVKWLEYIKIPRIVG 82

Query: 62  LAVIATVSVMCLFIVPLLF--LFYYGMLEMKELVSKVVLANQHGIPVPRW-LSDIPGGMW 118
            +++    ++ +              ++++ E+ +K+  A +     P   +  +     
Sbjct: 83  SSIVILTLILSIGFAGFTLRGQVQSIIVQLPEVTTKLTAAFETKRGEPLTDMQKVQIAAS 142

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDF-IPRFASRFGMIFLDYCLSIIFMIIALFFF 177
             E  T  +++  + K  S   +  +   F I  F  R  +         I M    +F 
Sbjct: 143 QVETATNSVTNAVASKKSSSMHVVIDDHKFKIGDFLWRGSLGIFGVVGEAITMAFLAYFL 202

Query: 178 YRDGFSISQQLDSLGEHLFPAYW--KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
              G +  ++L  L             I   +   I+     + I  +  GL +   + +
Sbjct: 203 LLSGDTFKRKLVHLTGPSLSRKKITVHILEDINNSIQRYMFMLLITNVMVGLSMWVLFRM 262

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK--GNIFNATCLFLWGAIELFIVD 293
            G+ +  A  V    + ++P   P+     +        G+   A  +     +   IV 
Sbjct: 263 IGLENAGAWAVFAGFLHVVPYFGPVVTAGATGIAAYMQFGSTSTAVLVAGMTMLVATIVG 322

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             L  ++ G   K+     F  L+      G+ G+ +G  L+ +I VI
Sbjct: 323 VFLTTWMTGRIAKMNSAAVFISLLFFTWLWGVWGMLLGIPLIVIIKVI 370


>gi|12002680|gb|AAG43365.1|AF153415_1 chromosome 9 open reading frame 5 [Homo sapiens]
          Length = 911

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 9/190 (4%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDG---FSISQQLDSLGEHLFPAYWKKIS-RIVPKVIR 212
           G   L++ LS+I  +  LF+        +   + + SL     P     I  + V + IR
Sbjct: 649 GTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIR 708

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI 271
             F     +A   GL     + + G+        + AI+  +P  G   +     + L +
Sbjct: 709 GVFDASLKMAGFYGLYTWLTHTMFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWL 768

Query: 272 KGNIF-NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +   A  L ++  +  + VD  +   + GG        T   + GG   +GL G  I
Sbjct: 769 TQGLGCKAILLLIFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAII 825

Query: 331 GPVLMALIAV 340
           GP+L+ ++ V
Sbjct: 826 GPILLCILVV 835


>gi|289551168|ref|YP_003472072.1| hypothetical protein SLGD_01857 [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658669|ref|ZP_07911539.1| conserved hypothetical protein [Staphylococcus lugdunensis M23590]
 gi|289180700|gb|ADC87945.1| hypothetical protein SLGD_01857 [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496300|gb|EFU84625.1| conserved hypothetical protein [Staphylococcus lugdunensis M23590]
          Length = 361

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 38/330 (11%), Positives = 106/330 (32%), Gaps = 12/330 (3%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F   +LS  +        + + + K             ++++ +  V + F+    +  +
Sbjct: 41  FLPFILSGFLFYICL--PFQTLLEKFGFPRWASITTIFIALIAIVAVVVAFIAPIIISNV 98

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             L+  +         +  +   +          T  +++         + +  N + +I
Sbjct: 99  NSLIHAIPTIQNDVERIINF--SLKQMDKLPSDVTTRINNTVKSLGDGVSDVLANSLSYI 156

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
             F S            ++ +   L +  +D       +    +     +   + + +  
Sbjct: 157 TSFISTI--------FLLVMVPFFLIYMLKDHEKFIPAVAKFFKGERKVFAVGLLQDLNF 208

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            ++S   G   +++  G++L   Y + G+P    L +   +  +IP   P    A +  L
Sbjct: 209 TLKSYIQGQVTVSVILGIILYIGYTIIGLPYTPLLVLFAGVANLIPFLGPWLSFAPAGIL 268

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            I  +      + +   I   +    + P ++G  + +  L     ++      G   + 
Sbjct: 269 GIIDSPTTFIWVCIVTLIAQQLEGNVITPNVMGKSLSIHPLTIIVVILAAGDLGGFTLIL 328

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISSN 359
           I   L A++  +            +K +S+
Sbjct: 329 IAVPLYAVLKTVASNIFKYRTRIMDKANSD 358


>gi|73666828|ref|YP_302844.1| hypothetical protein Ecaj_0196 [Ehrlichia canis str. Jake]
 gi|72393969|gb|AAZ68246.1| protein of unknown function UPF0118 [Ehrlichia canis str. Jake]
          Length = 373

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 69/352 (19%), Positives = 143/352 (40%), Gaps = 14/352 (3%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + + R +I+ II+++++ +K  FAP  SA+I+ +   P+ +   +    S  F   +  
Sbjct: 10  DKYVTRGVIILIIILAIFIIKPVFAPCCSAIIMAYLLNPLVNKLQN-IGLSRQFSVAVIL 68

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ--HGIPVPRWLS--------DIPGGM 117
           +S +C+ I  L+        ++  LV  ++      H   +  +L         ++   M
Sbjct: 69  LSSVCIIIAFLISFIPIAYSQLLSLVRFLIERIPLIHKDSITAFLQKYNIVEYEEVSNVM 128

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI-IALFF 176
             S+L  ++L   +++K L    +          F +    I + Y +SII +  I LF+
Sbjct: 129 RLSQLSFENLLSYENIKPLIGVLVGILKSLDNILFGAINSSISISYTVSIILITPILLFY 188

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
              +  SI +  +SL    + +  K  +  + K+I +   G   +    G+       L 
Sbjct: 189 ILCNWPSIVEYSNSLIPVKYQSVAKLYTERIDKIISAYIRGQLSVCFIMGIYYTICLSLI 248

Query: 237 GVPSHVALGVITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
            +   + +G I+ IM  IP   PI     +  I +L   +      + +   I   +   
Sbjct: 249 KLKYFLIIGFISGIMTFIPYVGPISCVVLSFVITMLQFNSWTICGIVLVMFIIGQLVESN 308

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            + P L+G  I +  +    G++     +G  G+ +   + A++ V  K  I
Sbjct: 309 IITPLLIGKSIDIHPIWIIIGMITCGSQIGFTGILLSIPITAIVGVFVKSFI 360


>gi|71152403|sp|Q9H330|CI005_HUMAN RecName: Full=Transmembrane protein C9orf5; AltName: Full=Protein
           CG-2
          Length = 911

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 9/190 (4%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDG---FSISQQLDSLGEHLFPAYWKKIS-RIVPKVIR 212
           G   L++ LS+I  +  LF+        +   + + SL     P     I  + V + IR
Sbjct: 649 GTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIR 708

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI 271
             F     +A   GL     + + G+        + AI+  +P  G   +     + L +
Sbjct: 709 GVFDASLKMAGFYGLYTWLTHTMFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWL 768

Query: 272 KGNIF-NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +   A  L ++  +  + VD  +   + GG        T   + GG   +GL G  I
Sbjct: 769 TQGLGCKAILLLIFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAII 825

Query: 331 GPVLMALIAV 340
           GP+L+ ++ V
Sbjct: 826 GPILLCILVV 835


>gi|17547343|ref|NP_520745.1| ABC transporter permease [Ralstonia solanacearum GMI1000]
 gi|17429646|emb|CAD16331.1| probable permease transmembrane transport protein [Ralstonia
           solanacearum GMI1000]
          Length = 356

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 42/316 (13%), Positives = 107/316 (33%), Gaps = 10/316 (3%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            P + A I+ +   P        +         +  + +  + +  +L +      E+  
Sbjct: 35  TPFVFAGILSYILHPGVEWLQRHRVPR-VLGVFLMILLLTVVAVALMLLILAVLQREIPA 93

Query: 92  LVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           +  ++  + ++    V   L+++   +       + L   Q      +            
Sbjct: 94  IREQLPGMLSKLNAAVTPRLAEMGVHVRFDFPGLRKLLTEQLAASPEDVMSTA------L 147

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
            +    G   +     +  + I +F+   D   + ++L+      + +  ++++     +
Sbjct: 148 NYLRVSGSAAVQVLGIVFLVPIVMFYLLMDWNMLIRRLEGAVPRRWISKTRELAAETDGL 207

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS--FTAVSIY 268
           +     G  I+ +       +   LAG    + +G+ T +   IP          A+   
Sbjct: 208 LSQYLRGQIIVMLVLAAYYSAGLALAGFDVALPIGIFTGLAVFIPYIGFGIGLILAILSA 267

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           LL  GN++    + +   +   +    L P LVG  I L  L     L+   +  G  G+
Sbjct: 268 LLQFGNLYGLLAVAVVYGVGQVLEGFYLTPRLVGERIGLHPLAVILALLAFGQLFGFFGI 327

Query: 329 FIGPVLMALIAVIWKE 344
            +   + A++ V  ++
Sbjct: 328 LLALPISAVLLVGLRQ 343


>gi|91781893|ref|YP_557099.1| hypothetical protein Bxe_A3952 [Burkholderia xenovorans LB400]
 gi|91685847|gb|ABE29047.1| Putative membrane protein [Burkholderia xenovorans LB400]
          Length = 383

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 48/319 (15%), Positives = 111/319 (34%), Gaps = 8/319 (2%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
                P L   I+ +   P  +  + ++       A++  +    L  + +L +      
Sbjct: 58  SPVLTPFLLGAILAYILQPGVAWMVRRRVPR-GLAALVMMLFFTLLMTLLVLLVLAVVQK 116

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           E  +L  +V +   H      WL   P         +   +  + + +            
Sbjct: 117 EGPQLRQQVPVLFAH---ANAWLQ--PKLALLGLADSLDFASIRDMVMGQLEGSAQTVAL 171

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
           +        G + +    +++ + + LF+   D   +  ++ ++    +     +++  +
Sbjct: 172 YAWTSIRTSGNVMITVVGNVVMVPLVLFYLLYDWNRMLARMQTVVPRRWLDKTLQLAHDM 231

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAV 265
            +++     G  ++          A  LA     + +G+ T +   IP  G A     A+
Sbjct: 232 DQMLSQYLRGQLLVMGVLAAYYAIALSLARFEIALPVGIFTGLAVFIPYIGFATGLALAL 291

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
              LL  G+ +    + L   +   +    L P LVG  I L  L   F L+   +  G 
Sbjct: 292 LAALLQFGDWYGFGAVALIYGVGQILESFFLTPRLVGERIGLHPLAVIFALLAFGQLFGF 351

Query: 326 LGLFIGPVLMALIAVIWKE 344
            G+ +   + A+++V  +E
Sbjct: 352 FGVLLALPVSAILSVATRE 370


>gi|324325982|gb|ADY21242.1| hypothetical protein YBT020_09980 [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 337

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 56/341 (16%), Positives = 121/341 (35%), Gaps = 25/341 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +G  R++++ I+ + LY LK     +L   I+ F           K + +   +    
Sbjct: 9   RSRGFQRFLVLIIVALVLYGLKSMINLILITFILTFLMDRFQRFISKKLKVNRKIVIACL 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++      L        +++ +L+ +  L  Q+           P      +     
Sbjct: 69  YIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQN-----------PPDNEIIKYALST 117

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           ++  +  K + +      G+D I +  +  G + L   LS+I  +  L     +   I  
Sbjct: 118 INGMEVSKYIEQ------GVDVIYQSIANIGKVSLQILLSLILSLFFL----LEKERIIT 167

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 E     ++++I+    +  RS         +IA+   ++      + G P  + 
Sbjct: 168 FTSKFKESKLKIFYEEIAYFGERFARSFGKVIEAQFLIAVVNCILTVIVLIVLGFPQLLV 227

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L V+  ++ +IP  G  IS   + I     G +     + ++  +   +    L P  + 
Sbjct: 228 LAVMIFLLGLIPVAGVIISLFPLCIIAYNVGGVIYVVYILVFITVIHALESYFLNPKFMS 287

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               LP   TF  L+     +G+ GL IG  +   +  +  
Sbjct: 288 AKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLD 328


>gi|219854560|ref|YP_002471682.1| hypothetical protein CKR_1217 [Clostridium kluyveri NBRC 12016]
 gi|219568284|dbj|BAH06268.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 346

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 109/319 (34%), Gaps = 13/319 (4%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L+     +L + +I +T  PI    +  K  S    A I    V    I     L    
Sbjct: 35  VLREIIYLILISFLISYTLKPI-QKIMVNKGISEKISAFILIALVGLFIISIFAILIPSL 93

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             E   L + +         +   L  I G      L    +++         T + T  
Sbjct: 94  FKESLSLNNAIYSIQNLVDNIYGKLKLIQGNRTIHVL----INNFNRKIDGEVTVMFTRI 149

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            D + +             L ++ + +  ++F  +G  I++++ S          K IS 
Sbjct: 150 FDSLMKMGQNI--------LYVVVIPVITYYFLSEGECINEKVLSTFPIKSRGIIKNISC 201

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              K++    +   +++   G+V      +  V   + L V+ A   +IP   PI     
Sbjct: 202 HADKILGRYIISQLMLSGFIGIVTFFILLILKVDFPIILSVLNAFFNIIPYFGPIFGAIP 261

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +I + +  +   A    +   +   I    L P +    I +  L     L+ G    G 
Sbjct: 262 AIAIALIESPEKAIWTAICLYVLQQIEGNILSPKVTADSISMHPLVVILLLIIGGEIAGF 321

Query: 326 LGLFIGPVLMALIAVIWKE 344
           +G+ +   L  +I V++++
Sbjct: 322 IGMVLAVPLGVIIKVMYED 340


>gi|126661126|ref|ZP_01732206.1| hypothetical protein CY0110_09575 [Cyanothece sp. CCY0110]
 gi|126617602|gb|EAZ88391.1| hypothetical protein CY0110_09575 [Cyanothece sp. CCY0110]
          Length = 340

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 49/316 (15%), Positives = 104/316 (32%), Gaps = 22/316 (6%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           +    P+  A  +    +P+ +    K      +L++I  + V+   +  L         
Sbjct: 28  QPISMPLAFAFFLVVLVYPLQNKLEQKL---PRWLSLIIVLFVLGGVVA-LAQGALSLSA 83

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           E+ E              +P++L  +       + W  +   P         F   N   
Sbjct: 84  EIIE------------PKIPQYLDRLEQMWTVIKSWASNYGLPVPQFN----FQNNNTPI 127

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            + + A      FL     +I  I  L     +     +++          +        
Sbjct: 128 QLTQQALSGLQTFLSTVSLLILTISLLILLLLEVNQYKRKVQQAFPSRTSQHIINAVGNT 187

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVS 266
            + +R     MT   I  G++ G    + GV   +  G+I  I+  +P  G+ I+    +
Sbjct: 188 SEKLRRYLTVMTFTCILTGVLTGIWCLIIGVDLALVWGLIAFILNYVPTIGSIIAVIPPT 247

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           +  L+   +       +   I   I+   + P + G  ++L      F +V      G+ 
Sbjct: 248 LIALLFNGVPRGIATVIGLGIIQVIMGNFVDPRIQGKTLQLSPFIALFSIVFWGWIWGIA 307

Query: 327 GLFIG-PVLMALIAVI 341
           G  +G P+ +++I   
Sbjct: 308 GAILGIPMTISIILFC 323


>gi|308188498|ref|YP_003932629.1| UPF0118 inner membrane protein yhhT [Pantoea vagans C9-1]
 gi|308059008|gb|ADO11180.1| UPF0118 inner membrane protein yhhT [Pantoea vagans C9-1]
          Length = 351

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 49/337 (14%), Positives = 121/337 (35%), Gaps = 22/337 (6%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              +++  ++ IIL  +        P+L A        P+ +  + +          +  
Sbjct: 11  QNILIKLAMLVIILAGVRAASDILVPLLLAAFFAIVLNPLVTMLMRR-GFRRGLAIGLVI 69

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             + C  ++ L  +    M E  +L  ++    +  + V                  +HL
Sbjct: 70  TVIFCGILL-LGAIIASSMSEFSDLYPQLRATMEQKMTV-----------------LQHL 111

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +    L I ++  ++    + +   AS     F     + + +++ + F   +   +  +
Sbjct: 112 AAGFHLNISTDALVQRFDPNTMVNLASAALSGFSGAMTNTVLLVLTVVFMLFEVHHLPYK 171

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + +    + P           K +       T++++  G+ +  + +L  V   +  GV+
Sbjct: 172 MRNAL--VNPKIRIAGLHKALKGVTHYLALKTLVSLITGIAVWLSLYLLDVKFALLWGVV 229

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             I+  IP  G  I+     +  L+  ++F+A  +         +    L P L+G  + 
Sbjct: 230 AFILNYIPNIGPIIAGIPPFLQALLLNSLFDAAMVAALFTAIHMVFGNMLEPRLMGRGLG 289

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L  L  F  LV     +G +G+ +   L ++  ++ +
Sbjct: 290 LSTLVVFLSLVFWGWLLGPVGMLLSVPLTSITKILME 326


>gi|194389636|dbj|BAG61779.1| unnamed protein product [Homo sapiens]
          Length = 879

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 9/190 (4%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDG---FSISQQLDSLGEHLFPAYWKKIS-RIVPKVIR 212
           G   L++ LS+I  +  LF+        +   + + SL     P     I  + V + IR
Sbjct: 649 GTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIR 708

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI 271
             F     +A   GL     + + G+        + AI+  +P  G   +     + L +
Sbjct: 709 GVFDASLKMAGFYGLYTWLTHTMFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWL 768

Query: 272 KGNIF-NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +   A  L ++  +  + VD  +   + GG        T   + GG   +GL G  I
Sbjct: 769 TQGLGCKAILLLIFHLVPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAII 825

Query: 331 GPVLMALIAV 340
           GP+L+ ++ V
Sbjct: 826 GPILLCILVV 835


>gi|256423124|ref|YP_003123777.1| hypothetical protein Cpin_4116 [Chitinophaga pinensis DSM 2588]
 gi|256038032|gb|ACU61576.1| protein of unknown function UPF0118 [Chitinophaga pinensis DSM
           2588]
          Length = 360

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 42/316 (13%), Positives = 102/316 (32%), Gaps = 20/316 (6%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P   A +I     P+ +     +      +++   ++ + L    L +     + +  
Sbjct: 36  LVPFAFAGLIAILLNPLCNRLERLRIPKVWAISLSLLLAALVLAG--LFYFLSAQISQFG 93

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           EL+  +   +Q                       + ++    + +  +T +     D   
Sbjct: 94  ELIPTLKTRSQE----------------LMGELQQWVALKLGISMEKQTDMLHKLTDNGQ 137

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
           ++                 + +  F        +   +          + + + +     
Sbjct: 138 QYLGHTLGSIFGVLGVFFLLPVYTFLLLLYKNQLVNFIYESFGSEHKEHVQDVLQSTKGA 197

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIY 268
           I+S   G+ I      ++   A  + GV   + LG I AI+ +IP  GG       V I 
Sbjct: 198 IQSYIAGLLIETAIIAVLNSIALLILGVKYAILLGTIGAILNLIPYIGGLIAIALPVMIA 257

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
            +   N      +     +  FI +  + P +V   + +  L +   ++ G    G+ G+
Sbjct: 258 TVTNDNFTTPLLIVGVYLLIQFIDNHLIVPKVVASKVSINALISIVVVLMGGALWGVSGM 317

Query: 329 FIGPVLMALIAVIWKE 344
           F+    +A++ +I+  
Sbjct: 318 FLSIPFVAILKIIFDH 333


>gi|169351127|ref|ZP_02868065.1| hypothetical protein CLOSPI_01906 [Clostridium spiroforme DSM 1552]
 gi|169292189|gb|EDS74322.1| hypothetical protein CLOSPI_01906 [Clostridium spiroforme DSM 1552]
          Length = 338

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 53/317 (16%), Positives = 116/317 (36%), Gaps = 18/317 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            MI+F+++++ Y L  +  P+  + +I     P+ +  I+  +  +  LA    +    L
Sbjct: 12  LMILFVLVITTYVLVNWLIPLFFSCLIVLILQPLLTREINLLKIKNNLLAKAVIIFNYGL 71

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           FIV ++ L  + ++++  ++  +          P +L  +      +        +   +
Sbjct: 72  FIVLVISLIIFCIIQIYNILEIL----------PAYLQKLYVMFSNNSYIIDISKYLDFI 121

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
              S + ++     FI        M        ++F+++   F   D     Q++D L  
Sbjct: 122 YSGSMSIIENVSSSFIHGLIMII-MKIPSIMFDMVFIVMTSLFMLLD----YQRIDKLLI 176

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
             +P     +      V  + F    II +     L   + +  +   V L  I AI   
Sbjct: 177 RKYPM-VSLVVDTTKDVFSNMFKAYFIIMVVTFFELWIGFLIMKLEHSVVLSCIIAIFDF 235

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +P  G  +      +       I  A  L +   + +      L P L+   + +  L +
Sbjct: 236 LPVFGIDMIMIPWIVICAFTNKISLALGLLIIYLVIVITK-NILEPKLIAKGLGISPLVS 294

Query: 313 FFGLVGGVRTMGLLGLF 329
             G+  G++ +G +GL 
Sbjct: 295 LIGMYLGMKILGFIGLI 311


>gi|153938584|ref|YP_001391862.1| hypothetical protein CLI_2628 [Clostridium botulinum F str.
           Langeland]
 gi|152934480|gb|ABS39978.1| putative membrane protein [Clostridium botulinum F str. Langeland]
 gi|295319886|gb|ADG00264.1| putative membrane protein [Clostridium botulinum F str. 230613]
          Length = 342

 Score = 69.5 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 47/319 (14%), Positives = 120/319 (37%), Gaps = 13/319 (4%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            ++   +  L + +I +   PI++ F+ +K  +  F A++  V+++ +  V ++ +    
Sbjct: 31  IVRDILSLFLISFVIYYVLKPIHT-FLKQKGINEKFSALLLVVTLIMIIGVFIISIIPAI 89

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + E   + S V    +       ++  I   +               +    E +  + G
Sbjct: 90  IKEGYNITSSVGYIQK-------YIDYIYNKINLLNNNKILGGILNKVNGKIENYTVSIG 142

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + + +F    G   LDY +    + I +++F   G  I Q+   +         K +  
Sbjct: 143 ENILNKFVG-LGENILDYAV----IPIIVYYFLAAGDKIIQKFFMIFPVKIRGMVKNVLE 197

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K++    +   I+ +   ++        G+   + L +I     +IP   P+  +  
Sbjct: 198 DIDKILARYIISQIILCLIITILTFLVLIGLGIKLPILLSLINGFFNIIPYFGPVIGSLP 257

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +I +    +   A    +       I    L P + G  + +  L     L+ G +  G 
Sbjct: 258 AILIAFTKSPKTALWALILLYFIQQIEGDILSPKITGDSVDMHPLTVILLLLVGGKIYGF 317

Query: 326 LGLFIGPVLMALIAVIWKE 344
           +G+ +   +  ++ +I+++
Sbjct: 318 VGMVLAIPIGVIMKIIYED 336


>gi|298490897|ref|YP_003721074.1| hypothetical protein Aazo_1849 ['Nostoc azollae' 0708]
 gi|298232815|gb|ADI63951.1| protein of unknown function UPF0118 ['Nostoc azollae' 0708]
          Length = 365

 Score = 69.5 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 62/353 (17%), Positives = 131/353 (37%), Gaps = 25/353 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFL----KGF---FAPVLSALIIGFTS-WPIYSSFI 52
           MR +      ++  + + II ++++ L    + F      +  A I+ F   +P+   F+
Sbjct: 1   MRRSASPQSLLIYGLSVPIIALNVWLLSVLFRYFQHPITILSIAAILAFLLNYPV--KFL 58

Query: 53  SKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD 112
            K   + T   +I  +  + L  +  + L    + +  +L++K+          P WL+ 
Sbjct: 59  EKARITRTQAVIIVLIITLALLGILCVTLVPMVIEQTIQLLNKI----------PDWLAS 108

Query: 113 IPG--GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
                G        + ++   SL          N +  I   A  F    L   L+++ +
Sbjct: 109 SQDNLGKLQVVARQRRINIDFSLVTNQINANIQNLVQQIASSAVGFAGTLLSGLLNLVLV 168

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           ++  F+    G  +   L +L        + K  ++     ++ FL   ++ +   LVL 
Sbjct: 169 VVLAFYMLLYGDHVWYGLINLLPSNIGIPFNKSLQLN---FQNFFLSQLLLGLFMELVLT 225

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
             +    VP  +   ++  +  +IP        ++   L++  N + A  +     +   
Sbjct: 226 PIFLFLRVPFALLFAIVIGLSELIPFVGATLGISLVTILVLLQNWWLAFPVATVAIVLQQ 285

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           I D  L P L+G  I L  +  F  ++ G    GLLG  +   +   I   + 
Sbjct: 286 IKDNLLAPKLLGNFIGLNPIWIFVSILMGFEIAGLLGTLVAVPIAGTIKGTFD 338


>gi|240949621|ref|ZP_04753956.1| putative permease perM-like protein [Actinobacillus minor NM305]
 gi|240295879|gb|EER46555.1| putative permease perM-like protein [Actinobacillus minor NM305]
          Length = 350

 Score = 69.1 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 44/338 (13%), Positives = 105/338 (31%), Gaps = 11/338 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            +PQ +    I+      +YF  G   P+L A+++ +           K         ++
Sbjct: 14  NDPQTVALLGILLFGFGIIYFFSGLIMPLLVAIVLAYLLESPIRFLTEKLHFPRLLSVLL 73

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
                + +    L+ +      +    +  +         +  W+  +P        +  
Sbjct: 74  VFGGTVSIVAFLLVVMVPSLWNQAVNFIRDLPNMFNL---LNEWVQALPEHYPELVDYAM 130

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                 SLK     + ++     +    S  G+    + + ++      FF  +D     
Sbjct: 131 LDGMMSSLKTKILGYGESLLAISVNSIISLVGLGIYAFLVPLMV-----FFLLKDKPIFL 185

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    +          ++   +   I +   G  +  +   +V         +   + L 
Sbjct: 186 RSFIKMMPK-NRRLATRVWIEMQGQIANYIRGKFLEILIVSVVTYIILIFFDLRYPLLLS 244

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGG 303
           V+  +  ++P  GA I    V++  L +  +       L   +   ++D   + PFL   
Sbjct: 245 VVVGLSVLVPYIGAVIVTIPVALIALFQFGLSPDFYYLLLAFVISQLLDGNLVVPFLFSE 304

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            + L  L     ++      G  G+F    L  L+  +
Sbjct: 305 AVNLHPLTIIVAVLIFGGLWGFWGVFFAIPLATLVKAV 342


>gi|116872852|ref|YP_849633.1| integral membrane protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741730|emb|CAK20854.1| conserved integral membrane protein [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 345

 Score = 69.1 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 119/358 (33%), Gaps = 26/358 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  + + R  +  +I   LY L+     +L   I  +    + +  + +       + ++
Sbjct: 8   LQNRSVRRVGVFLLIAFVLYLLRSQMNIILLTFIFSYLITRLENFILRRISIYRQIIVLL 67

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V +  + +   +        ++ +LV                          ++    
Sbjct: 68  LYVVIAAVIVFVFVKYIPVLADQINQLVKFGNHFLTT--------------DSNNDFINY 113

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            +       I+        G+  I  + +  G + ++    +   ++   FF      + 
Sbjct: 114 IIGLANQFDIMK---YTEQGVSMILTYLTNVGTVLMN----VFIALMLSLFFSLGKEHLI 166

Query: 186 QQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              +          +++                    IIA+   ++   A W+ G P  +
Sbjct: 167 SFTNQFSTSKIAFIYEEVKFFGSKFVATFGKVIEAQFIIALVNAVLTTIALWILGFPQLM 226

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L ++  ++ +IP  G  IS   ++I     G +     + +   I   +    L P L+
Sbjct: 227 TLSIMVFLLGLIPVAGVIISLVPLTIIGYSIGGLEYIFYILIVVIIIHALESYVLNPKLM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKEKISS 358
                LP   TF  L+ G    G+ GL +G PV+M  + V+   +    ++ K+ IS 
Sbjct: 287 SAKTNLPVFYTFIILIFGEHFFGIWGLIVGIPVVMFFLDVLGVTNQEEDEQLKDTISH 344


>gi|254456848|ref|ZP_05070276.1| integral membrane transport protein [Campylobacterales bacterium GD
           1]
 gi|207085640|gb|EDZ62924.1| integral membrane transport protein [Campylobacterales bacterium GD
           1]
          Length = 343

 Score = 69.1 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 51/329 (15%), Positives = 111/329 (33%), Gaps = 23/329 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + I+L  +        P L AL I     P Y+ F             ++ V V+ +F++
Sbjct: 16  VIIVLAGIKSATAIVIPFLLALFIAIILSPSYNYF-----NKKGLPNGLSLVLVITIFVI 70

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L  +        +E  S +    Q           + G           L      + +
Sbjct: 71  FLASVAKLIGTSAQEFSSNIGSYEQ----------QLSGSFHKITEMAVSLGIELPEEEI 120

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           +        +          G +F +     + ++  +F     G  +S+   +  ++  
Sbjct: 121 TSIINPKQIMQLTSGIVQGIGSMFTN---GFVILLSVVFMLLESGHFVSKITHATNDNRA 177

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
            +  ++I       I+   +   +I+I  G V+  A    G        V+  ++  IP 
Sbjct: 178 ISNIQEIISK----IKRYMVLKALISIFTGFVIWIALLFVGTDYAFLWAVLAFMLNFIPN 233

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ I+     +  LI+    +A  +         I+   + P ++G  + L  L  F  
Sbjct: 234 IGSIIAAVPAVLLTLIQLGSVSALIVSAIYVGVNIIIGSVIEPKIMGRGLGLSTLVVFLS 293

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L+     +G++G+ +   L  +  ++  E
Sbjct: 294 LLFWGWLLGIVGMLLSIPLTMMAKIVLDE 322


>gi|168207851|ref|ZP_02633856.1| putative domain of unknown function [Clostridium perfringens E str.
           JGS1987]
 gi|170660835|gb|EDT13518.1| putative domain of unknown function [Clostridium perfringens E str.
           JGS1987]
          Length = 345

 Score = 69.1 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 53/322 (16%), Positives = 116/322 (36%), Gaps = 19/322 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
            +     VL + I  +   P+Y     + + +  FLA+   +SV+ L +  L  L     
Sbjct: 34  FRDIIFIVLVSGIFAYILKPLYRFLCERTKINKNFLAMAIVLSVIFLILFFLTVLIPSMF 93

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E +     +            +++D+   M   EL          +  + E  +     
Sbjct: 94  KEGESFDGLINGIEF-------FINDLIMKMKFMEL---------GIFDVIEAQVTEKLN 137

Query: 147 DFIPRFASRFGMIFLDY---CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             +  FA+      + +    L+   + +  ++F   G  +S +          A  K +
Sbjct: 138 ILLVSFATSIINNLISFSENILAFAVIPVLAYYFLAYGDLLSNKFLYCCPMEKRALLKNL 197

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
            R V KV+    LG  ++++  G++      + G+   + L  + A++ +IP    +   
Sbjct: 198 GRDVDKVLGKYILGQLLLSLLVGVMTFIGMLILGIKFPLLLAFLNALLNIIPYFGAVLGA 257

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             +I + +         + L   I   I    + P +    I +  +     L+ G +  
Sbjct: 258 IPAIVVALVEGPNKILWVILTFLIIQQIEGNLIAPKITAESIDMHPILIIILLLIGEQIG 317

Query: 324 GLLGLFIGPVLMALIAVIWKES 345
           GLLG+     +  +I V++ + 
Sbjct: 318 GLLGMVFIVPIAVVIKVLFDDW 339


>gi|315301767|ref|ZP_07872817.1| YubA [Listeria ivanovii FSL F6-596]
 gi|313629863|gb|EFR97946.1| YubA [Listeria ivanovii FSL F6-596]
          Length = 264

 Score = 69.1 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 87/233 (37%), Gaps = 5/233 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI    +  LK   AP++ A I  +   PI      KK +    +A++  V +  + +
Sbjct: 37  IAFIFDPLMVILKTVAAPIILAGISYYLFNPIIDWLEKKKWKRGWAIALLYVVIIGLIIL 96

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +   F+      ++  L             + +  ++        +L  K  ++   +  
Sbjct: 97  L-FSFVIPAVKDQIISLFKTFPGY---WDQITQKFNEFSQSSLFDQLKDKLSTNMSDIMK 152

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                  +     I    S  G +  +  L+I+   + LF+  +DG  +   L  +    
Sbjct: 153 TISEKGTSVLNGAITSIGSIVGTVT-EVILAIVTTPLVLFYLLKDGKKLPDFLLKMLPVN 211

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             A+ +++       I S   G  I+++  G++L   Y + G+P  + L +I 
Sbjct: 212 GRAHTRQVLGEANHQISSYIRGQIIVSLCIGILLFIGYLIIGLPYALTLAIIA 264


>gi|300864653|ref|ZP_07109510.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300337314|emb|CBN54658.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 367

 Score = 69.1 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 107/299 (35%), Gaps = 10/299 (3%)

Query: 50  SFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW 109
             + +      F ++I+ V ++ L  +    +    + + +EL   V         +  W
Sbjct: 44  RLLERVGIQRGFASLISAVLLIALIGLFGALVVPPFLSQFRELTQLVPKGLTL---LEIW 100

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
           ++ +    W      ++L     L    +  +     +F      R    FL+     +F
Sbjct: 101 INQLFV--WLPTEARQYLPSVGELGNQVQPLISGLANNFF-----RLFSGFLNLTGGSLF 153

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
           +++    F  +  +  Q    L    +     +I  +    + +  +G     +  G V 
Sbjct: 154 VVVITIMFLLNPQAYRQGFLRLFPSFYRRRADEIFSLCETDLVAWIVGTLFNMLVIGSVS 213

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
           G   W+ GV   +A  ++   +  +P   PI  T     + +  + + A  + +   +  
Sbjct: 214 GIILWILGVKLVLANALLAGFLEAVPNVGPILSTVAPAAIALLDSPWKAVAVVIAYFLIQ 273

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            +    L P ++G  + L    T    +      G LGLF+   L+ ++ ++ +E ++ 
Sbjct: 274 QLEQFLLVPIVMGQQVSLLPAVTLLAQIFFASFFGFLGLFLALPLVIMVRILLREILVK 332


>gi|296112146|ref|YP_003622528.1| transport protein [Leuconostoc kimchii IMSNU 11154]
 gi|295833678|gb|ADG41559.1| transport protein [Leuconostoc kimchii IMSNU 11154]
          Length = 332

 Score = 69.1 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 42/341 (12%), Positives = 115/341 (33%), Gaps = 27/341 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             + + R+ ++ +I++ ++FL+ F + +L  +I  + +           + S +F  V  
Sbjct: 8   QKRQLYRYFVLLVIILLIFFLRQFMSLLLLTIIFSYLAINAAKRLSRFLKLSRSFAIVAV 67

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
               + +  + +       + ++K +++  + ++                          
Sbjct: 68  YAIFIAIIALSINHGASTVVHQVKSMITLTMDSS-----------------------WHA 104

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
               + +      ++ +   D +                 ++  ++  F F      +  
Sbjct: 105 NGFLKDIYKNIHQYINSLNTDQLISKGFSQLNQVGHVLYELVLALLFSFIFSMTYPQLKS 164

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVI---RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
              +     +  ++ +   IV + I      F    +I +   + +    +    P  + 
Sbjct: 165 WSLNFLHSPYKKFFGEFYIIVHRFIIILGRLFEVQLLIGVINTIAMVIVLYFLHFPYLIG 224

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
             ++  I+ +IP  G  IS   ++I   I GN      + +  A   F+    L P  + 
Sbjct: 225 FTILIFILGLIPVFGVVISLVPLAITAFIIGNWHTVLIILIAVACIHFLESYFLHPHFMS 284

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               +P L     L+   +  G+ GL IG  ++  +   ++
Sbjct: 285 QRTHMPILVILLNLIIMEKIFGVWGLVIGLPILTFLLDFFR 325


>gi|16077515|ref|NP_388329.1| integral inner membrane protein [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221308268|ref|ZP_03590115.1| hypothetical protein Bsubs1_02533 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312590|ref|ZP_03594395.1| hypothetical protein BsubsN3_02509 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317514|ref|ZP_03598808.1| hypothetical protein BsubsJ_02473 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321790|ref|ZP_03603084.1| hypothetical protein BsubsS_02544 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|8928505|sp|P96604|YDBI_BACSU RecName: Full=UPF0118 membrane protein ydbI
 gi|1881258|dbj|BAA19285.1| ydbI [Bacillus subtilis]
 gi|2632748|emb|CAB12255.1| putative integral inner membrane protein [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 350

 Score = 69.1 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 56/354 (15%), Positives = 113/354 (31%), Gaps = 21/354 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G+ R+ I  ++   LY  K     +L   I  F    +         +       +    
Sbjct: 12  GVRRFSIFVVLTGVLYLFKSMINLILLTFIFTFLMDRLELVVRQFVSQFFRVSQRVVITF 71

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +  L  V L    +     +   + ++V   +H    P     IP     + ++      
Sbjct: 72  LYMLLAVLLTVGGFVFYPVVAAQIQQLVKQIKHIAYHPD---SIPFFDEITSVFGDINIS 128

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                          G + +  + +        + L ++  +I   FF  +   +S+ + 
Sbjct: 129 SYV----------KEGFNVVYTYLADIST----FGLQVVMALILSMFFLFEKKRLSEFMA 174

Query: 190 SLGEHLFPAYWKKIS---RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
                    ++++I+       +          IIA+   ++   A W+   P    L +
Sbjct: 175 KFKTSKLRVFYEEIAFFGSKFARTFGKVLEAQFIIALVNCILTFIALWIMHFPQLFGLSI 234

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +   + +IP  G  IS   +SI     G       + L       I    L P L+    
Sbjct: 235 MVFFLGLIPVAGVVISLIPLSIIAYSTGGGMYVLYIVLVIFAIHAIETYFLNPKLMSAKT 294

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +LP   TF  L+      G+ GL IG  +   +  I   +    +    + +S+
Sbjct: 295 ELPIFFTFTVLIFSEHFFGIWGLIIGIPIFVFLLDILDVTNKEDRSKGPRENSD 348


>gi|329120004|ref|ZP_08248676.1| permease [Neisseria bacilliformis ATCC BAA-1200]
 gi|327463917|gb|EGF10231.1| permease [Neisseria bacilliformis ATCC BAA-1200]
          Length = 356

 Score = 69.1 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 58/337 (17%), Positives = 126/337 (37%), Gaps = 10/337 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I+           +  L+    P + A ++ +   P+      K        +++  +  
Sbjct: 13  IIGTAFFLACGALVLALRDILMPFIVAAVLAYILNPLVEKLRDKGVPR-GAASMLVMLFA 71

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           + L +  LL L    + + + L +++  L +        WL    GG         +   
Sbjct: 72  LLLLLALLLILVPMLITQFENLTNRLPQLIDFAQNKALPWLHAHFGGS-----LPLNKEA 126

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             +        ++       P   ++ G + +    + + + + L++F  D    S  + 
Sbjct: 127 AANWLKNHSGTVQQAASQIAPALMAQGGALAVGVS-NFVLLPLLLYYFLFDWQRWSHGIR 185

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +L    F   + +ISR +  V+     G  ++ +  GLV G+   L G+ S  A+G+I  
Sbjct: 186 ALIPRRFIDTYTRISREMDDVLGEFLRGQLMVMLIMGLVYGTGLMLTGLDSGFAIGMIAG 245

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGGPIKL 307
           I+  +P     +   ++    +         + +W    +  F+    + P +VG  I L
Sbjct: 246 ILVFVPYLGAFTGLLLATVAALLQFNSWHGMVAVWSVFAVGQFLESFFITPKIVGDRIGL 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                 F L+   + MG +G+ +G  L A+  V+ +E
Sbjct: 306 SPFWVIFSLMAFGQLMGFVGMLVGLPLAAVCLVLLRE 342


>gi|291482855|dbj|BAI83930.1| hypothetical protein BSNT_00768 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 350

 Score = 69.1 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 56/354 (15%), Positives = 112/354 (31%), Gaps = 21/354 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G+ R+ I  ++   LY  K     +L   I  F    +                 +    
Sbjct: 12  GVRRFSIFVVLTGVLYLFKSMINLILLTFIFTFLMDRLELVVRQFVSRFFRVSQRVVITF 71

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +  L  V L    +     +   + ++V   +H    P     IP     + ++      
Sbjct: 72  LYILLAVLLTVGGFVFYPVVAAQIQQLVKQIKHIAYHPD---SIPFFDEITSVFGDINIS 128

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                          G + +  + +        + L ++  +I   FF  +   +S+ + 
Sbjct: 129 SYV----------KEGFNVVYTYLADIST----FGLQVVMALILSMFFLFEKKRLSEFMA 174

Query: 190 SLGEHLFPAYWKKIS---RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
                    ++++I+       +          IIA+   ++   A W+   P    L +
Sbjct: 175 KFKTSKLRVFYEEIAFFGSKFARTFGKVLEAQFIIALVNCILTFIALWIMHFPQLFGLSI 234

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +   + +IP  G  IS   +SI     G       + L       I    L P L+    
Sbjct: 235 MVFFLGLIPVAGVVISLIPLSIIAYSTGGGMYVLYIVLVIFAIHAIETYFLNPKLMSAKT 294

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +LP   TF  L+      G+ GL IG  +   +  I   +    +    + +S+
Sbjct: 295 ELPIFFTFTVLIFSEHFFGIWGLIIGIPIFVFLLDILDVTNKEDRSKGPRENSD 348


>gi|302531313|ref|ZP_07283655.1| hypothetical protein SSMG_07695 [Streptomyces sp. AA4]
 gi|302440208|gb|EFL12024.1| hypothetical protein SSMG_07695 [Streptomyces sp. AA4]
          Length = 406

 Score = 69.1 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 44/264 (16%), Positives = 85/264 (32%), Gaps = 13/264 (4%)

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                 I  V+ + +    L F+       + EL  ++  +      +  WL + P    
Sbjct: 87  RGLATAIVLVAGLAVLGGLLTFVITQFSSGLPELQQQLTTSLN---QIKDWLINGPL--- 140

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
              L  + +    +  I      + +        A   G I   + L++   I    FF 
Sbjct: 141 --HLRQEQIQDFINQAIGFLQNNQASLTTTALTTAGTVGEILTGFVLTLFVTI----FFL 194

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
             G  I   L                R     + S       +A+ + + +G   W+ GV
Sbjct: 195 AGGDGIWTFLVRGVPQRVRNRVNVAGRRGFASLVSYIRATAAVAVVDAVGIGIGLWIVGV 254

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSI-YLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P  + L  +  + A IP    +    V++   L+   I  A  +       + +    L+
Sbjct: 255 PLVIPLATLVFLGAFIPIIGALITGGVAVLIALVSKGIIGAVVVLAIVVGVMQLESHVLQ 314

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVR 321
           P L+G  ++L  L     +  G+ 
Sbjct: 315 PLLLGRAVRLHPLAVVLAIAIGLV 338


>gi|148240639|ref|YP_001226026.1| permease [Synechococcus sp. WH 7803]
 gi|147849178|emb|CAK24729.1| Predicted permease [Synechococcus sp. WH 7803]
          Length = 359

 Score = 69.1 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 105/296 (35%), Gaps = 13/296 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  F    L+A +I F    I   +++ +        V+ T+  + L +   + L    +
Sbjct: 30  LAPFPGLFLTAALIAFLLD-IPCVWLTSRGLPRWLAIVMVTLFTISLLVFAGVTLVPLLI 88

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++ +L++ +            W++ +     A  L ++       L   +         
Sbjct: 89  DQLGQLINALPSLLNQ---AEGWITGLQSLAEARGLPSEFGDLSSDLVTRAGRVASQISQ 145

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +    +  G       ++ + +++   FF   G SI+  L       +      +   
Sbjct: 146 RLLGILGATLGT-----TINTVIVLVLAVFFLLGGRSIAAGLARWLPTAWREL---VIST 197

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           + +  R  F G  ++A+   +     + +  +P  V   V+     +IP  + ++  AVS
Sbjct: 198 LSRTFRGYFAGQVLLALILAMGQIVVFTVLKIPYGVLFAVLIGFTTLIPYASALTIIAVS 257

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             L  + +      + +   +   +VD+ ++P L+G  + L        L  G + 
Sbjct: 258 GLLAFQ-DPKTGLEILVAAILVGQLVDQVIQPRLMGSIVGLQPAWLLIALPLGAKA 312


>gi|308067937|ref|YP_003869542.1| Predicted permease [Paenibacillus polymyxa E681]
 gi|305857216|gb|ADM69004.1| Predicted permease [Paenibacillus polymyxa E681]
          Length = 361

 Score = 69.1 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/274 (10%), Positives = 90/274 (32%), Gaps = 9/274 (3%)

Query: 40  IGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA 99
           + +   PI      +K +  +   ++  + +  L  V    ++     ++  L       
Sbjct: 51  LYYLLRPIVDVMERRKIKR-SISILLIYLVIGVLLFVFSWGVWPTLRDQVTNLFENAPKL 109

Query: 100 NQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI 159
            +  +             W      + +  P    +   +         +  ++ +    
Sbjct: 110 IKSLVDQL--------SQWRHNQSLRQVLPPGKDPLSQLSDTLNEAFSTLSDYSVKLVSF 161

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
              + + +    I L++  ++G     ++ +     +     ++   +   + S  +   
Sbjct: 162 VSYFFIVLATFPILLYYMLKEGSKFGPKMLNFFPKKYHKDALEVMEDIDSALSSFIVSRV 221

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNAT 279
           +I +  G+++   + + G+P  + L VI+  +  IP    ++ +   + + +  +   A 
Sbjct: 222 LINVALGVMMFLGFLIIGLPYALLLAVISIFLNFIPYVGAVAASIPVVIIGLFESPSMAL 281

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
              +   +   I D  L P + G  + +  L   
Sbjct: 282 WSLVVVIVAQQIQDNWLSPIVFGKQLDIHPLTVV 315


>gi|218441749|ref|YP_002380078.1| hypothetical protein PCC7424_4853 [Cyanothece sp. PCC 7424]
 gi|218174477|gb|ACK73210.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7424]
          Length = 359

 Score = 69.1 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 46/335 (13%), Positives = 106/335 (31%), Gaps = 22/335 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             II+  +            A +I   + P+      K+     +LA++ T+  +    +
Sbjct: 20  FVIIVAGIKSAASILNSFFLASLIAIATVPLLQWLTRKRL--PGWLALLITILGVVGAGL 77

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L+      + ++ +L+    +  Q    V                  K +   + +K  
Sbjct: 78  TLIAFLGISISQLLQLLPTYEVKIQDFKDV-----------------LKEMLAARGIKAS 120

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               L       +    ++F +  +    + + ++  + F   +    S +L        
Sbjct: 121 QVLSLDIFSPSRLIGSIAQFLLAVIQALSNSLLLVFLVAFMLIEASGFSNKLHQNLIDNN 180

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
             + +       + IRS  +  T       +         GV      GV+  ++  IP 
Sbjct: 181 RVFNQ--FNAFSRDIRSYIIITTWTGAITAVADFLILAFFGVDLAALWGVLFFLLNFIPA 238

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G  ++     +   +K     A  +  +  +   IVDK ++P  +   + L  L     
Sbjct: 239 VGFLLAIIPPFLLGFLKLGTHQAFLIVFFCWLVDNIVDKGIKPRYMQQGLDLSPLIIILS 298

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++     +G  G  +   L  +I  +  ES    +
Sbjct: 299 VIFWSWVLGPTGAILAVPLTLMIKKVILESSEEGR 333


>gi|167626484|ref|YP_001676984.1| PerM family protein [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|241668920|ref|ZP_04756498.1| PerM family protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254877452|ref|ZP_05250162.1| PerM family protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|167596485|gb|ABZ86483.1| PerM family protein [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|254843473|gb|EET21887.1| PerM family protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 368

 Score = 69.1 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 54/341 (15%), Positives = 114/341 (33%), Gaps = 6/341 (1%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    N + I+ + +M    + L FL  + AP+L+AL+I +    + +      +     
Sbjct: 11  RNRYQNNEPIVFFGLMLFFYLVLTFLGNYIAPILAALVIAYLLDTLVNILQKFTKIKRII 70

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           L  I  +  + L +  +  L    + +   L+  +  A+     +   L  +        
Sbjct: 71  LVYIVYMLFLILLLSLIFVLLPIIVNQ---LIDFIKQASHTLSSLKESLEQLSVKYPTIL 127

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              +  S       +    + +N   FI +  +    +     + +  + + +F+F +D 
Sbjct: 128 TEARINSIVTWFDSIDWQKISSNIGSFILQNTATTIPVLFSILIYLFLVPLMVFYFLKDK 187

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +     S       A +   + + PK +     G  I  I   +V    +    +   
Sbjct: 188 ARMINWFKSFLPEQNGALYFVWNDLKPK-LADYVRGKAIELIIVSIVTYMGFAYFNLNYA 246

Query: 242 VALGVITAIMAMIP-GGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V   +  +IP  G  I    V  + +L  G       + +   I   +    L P 
Sbjct: 247 LLLAVGVGLSVIIPYVGMVIITIPVVMVGILQFGLNGTFVSMLIVFFIIQALDGNLLVPL 306

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           L    + +  +     ++      GL G+F    L  L   
Sbjct: 307 LFSEVLNIHPVGVVSSILIFGGIWGLWGIFFAIPLALLFIS 347


>gi|15607346|ref|NP_214719.1| transmembrane protein [Mycobacterium tuberculosis H37Rv]
 gi|15839585|ref|NP_334622.1| hypothetical protein MT0215 [Mycobacterium tuberculosis CDC1551]
 gi|148659969|ref|YP_001281492.1| putative transmembrane protein [Mycobacterium tuberculosis H37Ra]
 gi|167968797|ref|ZP_02551074.1| putative conserved transmembrane protein [Mycobacterium
           tuberculosis H37Ra]
 gi|215406198|ref|ZP_03418379.1| putative transmembrane protein [Mycobacterium tuberculosis 02_1987]
 gi|215448484|ref|ZP_03435236.1| putative transmembrane protein [Mycobacterium tuberculosis T85]
 gi|218755942|ref|ZP_03534738.1| putative transmembrane protein [Mycobacterium tuberculosis GM 1503]
 gi|253797127|ref|YP_003030128.1| hypothetical protein TBMG_00206 [Mycobacterium tuberculosis KZN
           1435]
 gi|254233592|ref|ZP_04926918.1| hypothetical protein TBCG_00203 [Mycobacterium tuberculosis C]
 gi|254366656|ref|ZP_04982700.1| conserved transmembrane protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254549144|ref|ZP_05139591.1| hypothetical protein Mtube_01551 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289552457|ref|ZP_06441667.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605]
 gi|289747972|ref|ZP_06507350.1| transmembrane protein [Mycobacterium tuberculosis 02_1987]
 gi|289760308|ref|ZP_06519686.1| transmembrane protein [Mycobacterium tuberculosis T85]
 gi|289764321|ref|ZP_06523699.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|294994678|ref|ZP_06800369.1| transmembrane protein [Mycobacterium tuberculosis 210]
 gi|297632685|ref|ZP_06950465.1| transmembrane protein [Mycobacterium tuberculosis KZN 4207]
 gi|297729659|ref|ZP_06958777.1| transmembrane protein [Mycobacterium tuberculosis KZN R506]
 gi|306774295|ref|ZP_07412632.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
 gi|306779038|ref|ZP_07417375.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
 gi|306782826|ref|ZP_07421148.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
 gi|306787195|ref|ZP_07425517.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
 gi|306791750|ref|ZP_07430052.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
 gi|306795792|ref|ZP_07434094.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
 gi|306801789|ref|ZP_07438457.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008]
 gi|306806002|ref|ZP_07442670.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
 gi|306970396|ref|ZP_07483057.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
 gi|306974629|ref|ZP_07487290.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
 gi|307082338|ref|ZP_07491508.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011]
 gi|307082682|ref|ZP_07491795.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
 gi|313656985|ref|ZP_07813865.1| transmembrane protein [Mycobacterium tuberculosis KZN V2475]
 gi|8928458|sp|O53656|Y205_MYCTU RecName: Full=UPF0118 membrane protein Rv0205/MT0215
 gi|2909603|emb|CAA17327.1| PROBABLE CONSERVED TRANSMEMBRANE PROTEIN [Mycobacterium
           tuberculosis H37Rv]
 gi|13879700|gb|AAK44436.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
 gi|124603385|gb|EAY61660.1| hypothetical protein TBCG_00203 [Mycobacterium tuberculosis C]
 gi|134152168|gb|EBA44213.1| conserved transmembrane protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148504121|gb|ABQ71930.1| putative conserved transmembrane protein [Mycobacterium
           tuberculosis H37Ra]
 gi|253318630|gb|ACT23233.1| conserved membrane protein [Mycobacterium tuberculosis KZN 1435]
 gi|289437089|gb|EFD19582.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605]
 gi|289688500|gb|EFD55988.1| transmembrane protein [Mycobacterium tuberculosis 02_1987]
 gi|289711827|gb|EFD75843.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|289715872|gb|EFD79884.1| transmembrane protein [Mycobacterium tuberculosis T85]
 gi|308217128|gb|EFO76527.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
 gi|308327966|gb|EFP16817.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
 gi|308332346|gb|EFP21197.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
 gi|308336098|gb|EFP24949.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
 gi|308339729|gb|EFP28580.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
 gi|308343734|gb|EFP32585.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
 gi|308347455|gb|EFP36306.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
 gi|308351505|gb|EFP40356.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008]
 gi|308352082|gb|EFP40933.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
 gi|308356032|gb|EFP44883.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
 gi|308359987|gb|EFP48838.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011]
 gi|308367553|gb|EFP56404.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
 gi|323717194|gb|EGB26403.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
 gi|326905960|gb|EGE52893.1| conserved membrane protein [Mycobacterium tuberculosis W-148]
 gi|328456914|gb|AEB02337.1| conserved membrane protein [Mycobacterium tuberculosis KZN 4207]
          Length = 367

 Score = 69.1 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 57/330 (17%), Positives = 114/330 (34%), Gaps = 19/330 (5%)

Query: 14  WMIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +I+  ++  L+ L  F     PVL AL++     P      S+    +     +  +S 
Sbjct: 25  LVILAAMVALLWVLNKFEVIVVPVLLALMLSALLVPPVDWLDSRGLPHA-VAVTLVLLSG 83

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             +    L F+    +  +  LV++V  +        RWL + P  +   ++     +  
Sbjct: 84  FAVLGGILTFVVSQFIAGLPHLVTEVERSIDSAR---RWLIEGPAHLRGEQIDNAGNAAI 140

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           ++L+              +   A        +   + + ++  L FF   G SI Q +  
Sbjct: 141 EALRNNQAK---------LTSGALSTAATITELVTAAVLVLFTLIFFLYGGRSIWQYVTK 191

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                     +   R     +        ++A+ +   +G+   + GVP  + L  +   
Sbjct: 192 AFPASVRDRVRAAGRAGYASLIGYARATFLVALTDAAGVGAGLAVMGVPLALPLASLVFF 251

Query: 251 MAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            A IP    +   F AV + LL KG I  A            +    L+P ++G  + + 
Sbjct: 252 GAFIPLIGAVVAGFLAVVVALLAKG-IGYALITVGLLIAVNQLEAHLLQPLVMGRAVSIH 310

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
            L     +  G    G++G  +    +A  
Sbjct: 311 PLAVVLAIAAGGVLAGVVGALLAVPTVAFF 340


>gi|256824791|ref|YP_003148751.1| putative permease [Kytococcus sedentarius DSM 20547]
 gi|256688184|gb|ACV05986.1| predicted permease [Kytococcus sedentarius DSM 20547]
          Length = 357

 Score = 69.1 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 37/323 (11%), Positives = 101/323 (31%), Gaps = 11/323 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
              ++ ++ +  T  P+    + +     +    +  + ++  F      +    + E  
Sbjct: 46  ITLLVVSVFLALTLNPLVEQLMLR-GLRRSGAVTVVFLWLLVAFTGIGALVLPPIVDEST 104

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L+       Q  +    W+         ++ +   L    S   L+             
Sbjct: 105 ALLYDAPTYTQAFLEQ-DWVQQADRDFQLTDRFQNELQKRVSSGELAGQVTGGVLGAGRV 163

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                FG   +      +   +             +   +L         +++S  + + 
Sbjct: 164 LATGAFGAFTVLVLTLYLLATL---------PQTKRAGYALVPASRRERVEELSEKIMRR 214

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           +     G  ++A   GL       + G+P    L V+   + +IP         V   + 
Sbjct: 215 VGGYAAGQFLVATINGLCSWVMMTILGIPYAAVLAVLVGFLGLIPLVGATIGAVVVGLIA 274

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +  ++  A  +  +  I   + +  + P ++   + +P   T    + G    G+LG  +
Sbjct: 275 LSQSVEVALIVGAYYLIYQQVENYVIVPNIMKRTVSVPGAVTVVAALIGGTLAGILGALL 334

Query: 331 GPVLMALIAVIWKESIMAIKENK 353
                A + +I++E ++  +  +
Sbjct: 335 AIPTAAGLLLIYEEVLVPRQARR 357


>gi|218675451|ref|ZP_03525120.1| hypothetical protein RetlG_30796 [Rhizobium etli GR56]
          Length = 301

 Score = 69.1 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 34/267 (12%), Positives = 87/267 (32%), Gaps = 16/267 (5%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           + T ++  + ++P+       + +  +   ++               +     W      
Sbjct: 1   MITFTLALMILIPV------LVSQFNDFAERLPGYISQLQQFIDTSKNSLLPEWVRSQAG 54

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
               +   +      FL       +       G   +D    ++   +  F+   D   +
Sbjct: 55  TIKDNFSGILSEGMGFLTG-----LFAQIWNSGKAIVDVISLLVVTPVVAFYILLDWDRM 109

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             ++D      + A  ++I++ + + I     G   + +  G+   +   L G+   + +
Sbjct: 110 ISKVDQWIPRDYVADVRQIAKEIDQAIAGFIRGQGSLCLILGIYYAAGLSLVGLNFGLLI 169

Query: 245 GVITAIMAMIPGGAPIS----FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           G+   +++ IP    +        V+I        +    L ++ +   F+    L+P L
Sbjct: 170 GLFAGMISFIPYVGSLVGLVLSVGVAIVQFWPDYPWIGLVLVVFFSG-QFLEGNILQPKL 228

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           VG  + L  +   F L       G +G
Sbjct: 229 VGSSVGLHPVWLMFALFAFGALFGFVG 255


>gi|119774627|ref|YP_927367.1| hypothetical protein Sama_1490 [Shewanella amazonensis SB2B]
 gi|119767127|gb|ABL99697.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
          Length = 358

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 107/332 (32%), Gaps = 23/332 (6%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
            + +IL  +        P + +  I     P+ S  +  +     +LAV+  +  + +  
Sbjct: 20  FVVVILAGIKAASPIVVPFVLSAFIAVICNPVISWMMRFRV--PKWLAVMLLMFFIVMLG 77

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + L  L    + E  + +                             W        +++I
Sbjct: 78  LWLATLVGSSINEFSKQLPHYRDQLIQQFG-----------------WILEKLQTLNIRI 120

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
             E  L            +       +   ++  +I+ + F   +  S+ +++    +  
Sbjct: 121 SKEQVLAYFDPGMALSMTTNMLSGVGNVMANLFLIILTIVFMLFEAQSLPKKVHLALDD- 179

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
            P    +        +    +  T++++  G V+G      GV   +   VI  +   IP
Sbjct: 180 -PEMRLQQIDKFLHSVNQYMVIKTLVSLATGAVVGIGLAAIGVDYALLWAVIAFLFNYIP 238

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G+ I+     +   I+     A    L       ++   + P  +G  + L  L  F 
Sbjct: 239 NIGSIIAAIPAILLAFIQLGPAAAGGTALLYLGTNMVMGNVIEPKFMGRGLGLSTLVVFL 298

Query: 315 GLVGGVRTMGLLGLFIG-PVLMALIAVIWKES 345
            L+     +G +G+ +  P+ M +   + + S
Sbjct: 299 SLIFWGWLLGSVGMLLSVPLTMIVKIALERSS 330


>gi|257462328|ref|ZP_05626743.1| permease [Fusobacterium sp. D12]
 gi|317059994|ref|ZP_07924479.1| permease [Fusobacterium sp. D12]
 gi|313685670|gb|EFS22505.1| permease [Fusobacterium sp. D12]
          Length = 377

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/337 (13%), Positives = 121/337 (35%), Gaps = 14/337 (4%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           FF P++ A+ +    +P+ +   +       F  +   + ++        F   + ++ +
Sbjct: 39  FFVPLIWAVFLSILLYPLQAFLRNHFHVKRAFALIAVLLLLV-------FFFSLFMLIVI 91

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
            ++   +    Q    + + + +     +        L   ++  + + +    + I  I
Sbjct: 92  PQVSKSIKELQQIYPYIEKRVGEFLDKSFLFLHKRGLLFMDETEIMKAISTYTKDNIQKI 151

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALF---FFYRDGFSISQQLDSLG----EHLFPAYWKK 202
            +          D    I   +I LF   F         + ++ L     +        +
Sbjct: 152 QQIGISIFWNVFDLTFGIANFLIGLFLACFILLKPEDFIKLIERLVYLSVKKEKALQIIE 211

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           I R    +  + F+G  +++I    ++    +L+  P  V   ++  +  MIP    +  
Sbjct: 212 ILRKSKDIFLNYFVGRLLVSIIVAFIVFLVLFLSKTPYPVLTALLFGVGNMIPYLGVLGA 271

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
           + +S +L++    +    L     +   +    + P +VG  + L        ++   + 
Sbjct: 272 SLISGFLILIFAPYKIGYLIFAIVLSQALDGFIIGPKIVGDKVGLNSFWVVVAILLCGKL 331

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           MG+ G+F+G  +  +I +I++E   A  + +E     
Sbjct: 332 MGIAGMFLGVPIFCIIKLIYEEKWKAYVQEEENEKEK 368


>gi|168183712|ref|ZP_02618376.1| sporulation integral membrane protein YtvI [Clostridium botulinum
           Bf]
 gi|182673274|gb|EDT85235.1| sporulation integral membrane protein YtvI [Clostridium botulinum
           Bf]
          Length = 351

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/333 (14%), Positives = 114/333 (34%), Gaps = 26/333 (7%)

Query: 15  MIMFIILVSLYFL-----KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           +I+F I+ +  FL       +  P + A +         S  I K +  ++  + I T+ 
Sbjct: 11  LILFFIIYTTSFLIFFKTLSYTLPFVLAFLFALVLKKPASYLIKKLKIKNSLASFIVTLI 70

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              + I  L +     + E+ +                          +   ++  +L+ 
Sbjct: 71  FFSIIITLLFWGINLLVHEVVDFGRNAQAYLYSHEEE--------ISNYVDNIYRYYLNL 122

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY----------CLSIIFMIIALFFFYR 179
           P S+    E  +  +            G I   +           + I+F +++ +FF +
Sbjct: 123 PPSIIDSIEKTIGNSFSKISNIIVFITGKIVSSFIGLLTSIPYILMLILFTLLSTYFFTK 182

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D    + ++  +  +   + +  I     K++    L    +           +++  + 
Sbjct: 183 DITKYNNKISKIMFNEHSSKFSHIYLESKKMLNGYILSYLTLIGITFFETLIIFFIFNIK 242

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
             +   +  AI   +P  G    +  ++ IY+L+  N      L +     + I+ + L 
Sbjct: 243 YSIMFSITAAIADFLPILGIGTIYVPLALIYILVYKNYVVGIGLLI-SYAAVSIIRQILE 301

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           P L+   + L  +     +  G++  G+ G+F 
Sbjct: 302 PKLLSSSLGLHPISILAAIFIGLKANGISGMFF 334


>gi|114778235|ref|ZP_01453107.1| permease, putative [Mariprofundus ferrooxydans PV-1]
 gi|114551482|gb|EAU54037.1| permease, putative [Mariprofundus ferrooxydans PV-1]
          Length = 357

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 83/250 (33%), Gaps = 4/250 (1%)

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
            ++     H     + L D    + A+     +  + Q +   +   ++  G        
Sbjct: 93  EQIGRLATHAPQYMQSLRDTLHQLQANYAEWINPDYLQQIIAGATDKMQEWGGALFKFSI 152

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
           +      +   +  + + + +FF  +D   I                +++ R +   I +
Sbjct: 153 ASI-PGMITLLVYAVLVPVLVFFLLKDKQLIMSWAQQFLPR-ERTLLQRVWRELDIQIGN 210

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIK 272
              G    A   G  +   YW  G    + LGV+T +   IP  G  +    V +    +
Sbjct: 211 YIRGKFWEAFIIGCAMWVVYWWMGHDYALLLGVLTGLSVWIPFVGMAVVTVPVILLSYFQ 270

Query: 273 GNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
               +     L   + +  +D   + P+L    + L  +     ++      G++G+ I 
Sbjct: 271 WGWSDTMAYGLLAYVIVQAIDANVIVPWLFSEIVNLHPIAIIVAILMFGSLWGIVGVIIA 330

Query: 332 PVLMALIAVI 341
             + AL+  +
Sbjct: 331 IPMAALVKSV 340


>gi|110681719|ref|NP_114401.2| transmembrane protein C9orf5 [Homo sapiens]
 gi|55958884|emb|CAI15128.1| chromosome 9 open reading frame 5 [Homo sapiens]
 gi|55961248|emb|CAI13317.1| chromosome 9 open reading frame 5 [Homo sapiens]
 gi|57160693|emb|CAI39466.1| chromosome 9 open reading frame 5 [Homo sapiens]
 gi|119579442|gb|EAW59038.1| chromosome 9 open reading frame 5, isoform CRA_a [Homo sapiens]
          Length = 879

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 9/190 (4%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDG---FSISQQLDSLGEHLFPAYWKKIS-RIVPKVIR 212
           G   L++ LS+I  +  LF+        +   + + SL     P     I  + V + IR
Sbjct: 649 GTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIR 708

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI 271
             F     +A   GL     + + G+        + AI+  +P  G   +     + L +
Sbjct: 709 GVFDASLKMAGFYGLYTWLTHTMFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWL 768

Query: 272 KGNIF-NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +   A  L ++  +  + VD  +   + GG        T   + GG   +GL G  I
Sbjct: 769 TQGLGCKAILLLIFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAII 825

Query: 331 GPVLMALIAV 340
           GP+L+ ++ V
Sbjct: 826 GPILLCILVV 835


>gi|291043852|ref|ZP_06569568.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293399067|ref|ZP_06643232.1| permease [Neisseria gonorrhoeae F62]
 gi|291012315|gb|EFE04304.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291610481|gb|EFF39591.1| permease [Neisseria gonorrhoeae F62]
          Length = 359

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 58/331 (17%), Positives = 122/331 (36%), Gaps = 10/331 (3%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
              ++  +Y L     P   A ++ +   P+      K    ++    +   S++ L  +
Sbjct: 22  FAALVWLVYALGDTLTPFAVAAVLAYVLDPLVEWLQKKGLNRASASMSVMVFSLILLLAL 81

Query: 77  PLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            LL +    + +   L S++  L       +  WL +  GG      + +          
Sbjct: 82  -LLIIVPMLVGQFNNLASRLPQLIGFMQNTLLPWLKNTIGG------YVEIDQASIIAWF 134

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            + T   +N +        + G   +    +++   + L++F  D    S  +  L    
Sbjct: 135 QAHTGELSNALKAWFPVLMKQGGNIVSSIGNLLLPPLLLYYFLLDWQRWSCGIAKLVPRR 194

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +P
Sbjct: 195 FAGAYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLMLVGLDSGFAIGMVAGILVFVP 254

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGGPIKLPFLPTF 313
                +   ++    +         L +W    +  F+    + P +VG  I L      
Sbjct: 255 YLGAFTGLLLATVAALLQFGSWNGILAVWAVFAVGQFLESFFITPKIVGDRIGLSPFWVI 314

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           F L+     MG +G+  G  L A+  V+ +E
Sbjct: 315 FSLMAFGELMGFVGMLAGLPLAAVTLVLLRE 345


>gi|15803986|ref|NP_290022.1| hypothetical protein Z4848 [Escherichia coli O157:H7 EDL933]
 gi|291284814|ref|YP_003501632.1| hypothetical protein G2583_4177 [Escherichia coli O55:H7 str.
           CB9615]
 gi|25325137|pir||C86015 hypothetical protein yhhT [imported] - Escherichia coli  (strain
           O157:H7, substrain EDL933)
 gi|12518133|gb|AAG58583.1|AE005570_10 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|290764687|gb|ADD58648.1| hypothetical protein G2583_4177 [Escherichia coli O55:H7 str.
           CB9615]
          Length = 364

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/321 (13%), Positives = 114/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +       +A   V
Sbjct: 29  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITIV 83

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E +S +   N+                       + +   
Sbjct: 84  VVVMLIALTALVGVLAASFNEFISMLPKFNKELT--------------RKLFKLQEMLPF 129

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++  
Sbjct: 130 LNLHMSPERMLQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKM-R 188

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+  +
Sbjct: 189 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGVIVWLGLELMGVQFALMWAVLAFL 247

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA IS     I +L+   ++    +     +   ++   L P ++G  + +  
Sbjct: 248 LNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMST 307

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 308 MVVFLSLLIWGWLLGPVGMLL 328


>gi|218440715|ref|YP_002379044.1| hypothetical protein PCC7424_3795 [Cyanothece sp. PCC 7424]
 gi|218173443|gb|ACK72176.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7424]
          Length = 350

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 56/325 (17%), Positives = 117/325 (36%), Gaps = 17/325 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           W+++ +I      +  F    L A +I F         + ++  S  +   +  +  + +
Sbjct: 26  WLLVLLINSLEPLVSIFVTATLLAFLIDFP-----IRLLEQRGISRLWAVTLVFLMALVI 80

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             +  L L    + ++ EL+S +    + G     +L              + ++     
Sbjct: 81  LAILSLILVPLIVQQLSELISVLPQWIETGSQNLEYLRQWAIAQNLPINLNETITQMAER 140

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                  L +  ++FI                +IIF+++   F    G ++ + L S   
Sbjct: 141 LTNIFQSLSSQVLNFILSTIGSI--------FNIIFVLVLTVFLVFTGENLWEGLFSW-- 190

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            L   + K +  ++ +     F    I+A    L     + +  VP  V  GV   +  +
Sbjct: 191 -LPVPWNKDLRNLIREKFEKYFASQAILAGILSLSQTLIFTVLNVPYSVLFGVTIGLTTL 249

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP  + ++   +   +L   N      + +   I   I D+ + P L+GG   L  +   
Sbjct: 250 IPYASALTIL-LISIILSLENWVLGLKVLIAAIIIGQINDQVIAPRLMGGLTGLNPVWLI 308

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALI 338
             L  G ++ G+LGL I     ++I
Sbjct: 309 IALFIGGKSAGILGLLIAVPFASVI 333


>gi|171741160|ref|ZP_02916967.1| hypothetical protein BIFDEN_00227 [Bifidobacterium dentium ATCC
           27678]
 gi|171276774|gb|EDT44435.1| hypothetical protein BIFDEN_00227 [Bifidobacterium dentium ATCC
           27678]
          Length = 492

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/353 (11%), Positives = 110/353 (31%), Gaps = 23/353 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYF--------LKGFFAPVLSALIIGFTSWPIYSSFISK 54
           ++   P+ + R ++   I + ++         +      ++ +L +     P+    +  
Sbjct: 39  DSRRPPEWLGRALLYIAIAIVVFSFCWRSWGQIAYLVMDIVVSLFLALAVEPVVVPLVKH 98

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
                 F ++ A V +  +            + ++  +++ +          P     I 
Sbjct: 99  -GWKRAFASLFALVLLAVILCTLFGLFGNMFVQQVIAMINGL----------PDLYKQI- 146

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
              + S+     L    SL       ++T+ +      A         + L+++ +++  
Sbjct: 147 -CDFVSQYTNFELPEINSLGSEILKNIQTSWVTDFAGTALSTVSGLFSFLLNLMTIVMTT 205

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           ++    G  + +             +  +  +    I S      I+A+           
Sbjct: 206 YYISAAGPKLRRAACQWMAPAAQRRFLFVWTVSQGQISSFLFSRAILALLNATFTAICLE 265

Query: 235 LAGVPSHVALGVITAIMA-MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           +  VP  + L +   + +  IP  G  I      ++      I+    +  +  +   I 
Sbjct: 266 VLHVPYWLPLALFCGVTSQFIPMLGTYIGGALPVLFAWGNRGIWYGIAVLAFICVYQQIE 325

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +    P +    + +     F  ++      G LG F+   + A I  I++  
Sbjct: 326 NLIFAPKISQRTMNINDAVAFLAVLAFGSLFGALGAFLALPVTASIQTIFRTY 378


>gi|256371624|ref|YP_003109448.1| protein of unknown function UPF0118 [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256008208|gb|ACU53775.1| protein of unknown function UPF0118 [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 422

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/332 (14%), Positives = 112/332 (33%), Gaps = 13/332 (3%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + + + +   L+     ++ A ++     PI S  +         + V A          
Sbjct: 22  LGVAVWAFAVLRHLELEIVVAGVLALVIEPIVSRLVRLGLPRVVAVLVTA---------- 71

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +L L     L    +V  V    +    +P  LS +     A E     L    +L + 
Sbjct: 72  -VLVLAALVGLAAAFVVPLVNAGQRLLGDLPGLLSRLRAHRAAIEALLVRLHLQHALDVG 130

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           +++    +        A       +    ++  +     F   +       L +  +   
Sbjct: 131 AQSI--AHAAQLAVTPALSVASGAVGSLATLAVIGTLAVFLSLEAPKAIAWLVAQLDASR 188

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               + +   V   +    LG    ++  GLV+G  Y + G+P    +G+   ++ ++P 
Sbjct: 189 RPRVEGVLHDVAIAVAGYVLGNLATSVVAGLVIGVTYAILGLPDPALIGLWVGLVDLLPL 248

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
              ++    ++ L + G   +   + +       I +  L P +    ++L  L     +
Sbjct: 249 VGGLAGGVPAVALALVGGPEDVVIVLIVVLAYQQIENHVLNPVVYAKTVRLSPLWVLVAI 308

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           + G +   L G  I   + + I VI +E++  
Sbjct: 309 LVGAQAASLPGALIAIPIASAIQVIARETLRD 340


>gi|29830936|ref|NP_825570.1| integral membrane protein [Streptomyces avermitilis MA-4680]
 gi|29608049|dbj|BAC72105.1| putative integral membrane protein [Streptomyces avermitilis
           MA-4680]
          Length = 347

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 60/357 (16%), Positives = 120/357 (33%), Gaps = 28/357 (7%)

Query: 9   QGIMRWMIMFIILVSL-YF-------LKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           + +  W  + +++  + +        L+    PVL AL+      P++   + +   + +
Sbjct: 9   RRLAAWCAVILLVAGVGWVGVQLCGELRTAVVPVLLALLGTALLGPLHRRLV-RVGVNRS 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A I  V+V+ +    +  +    +    E+V+ +  A Q                   
Sbjct: 68  LAAGITCVAVVAVVGGAVYIVVAALLDTGDEIVASLKRAAQS------------VAAHFG 115

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
              T       + K L   F  T   + I   +     I +     ++          RD
Sbjct: 116 AAGTSLDDLASNAKELLTKFGGTAASNVISGVSVVGESIAMAVLALLLVFFFL-----RD 170

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
               +  L SL         + ++R   + +     G T+IA  + + +     + GVP 
Sbjct: 171 SHRAAGLLRSLAPGGTADTVEAMARRAFEAVEGFMRGTTLIAFIDAVCITVGLLILGVPG 230

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            V LG +  + A IP  GA IS     +  L       A       A    +    L+P 
Sbjct: 231 AVGLGALVFVGAYIPYLGAFISGALAVLVALADRGFVIALWALGVVAAVQVLEGHVLQPA 290

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKEK 355
           +    +++        + GG    G+LG+ +  P+  A  AV+ +       +  + 
Sbjct: 291 IQSRTVQMHPAVVMLTITGGASVAGILGMLLAVPLTAAAFAVVHELRARYAADTPQP 347


>gi|240080750|ref|ZP_04725293.1| hypothetical protein NgonF_05467 [Neisseria gonorrhoeae FA19]
 gi|240123489|ref|ZP_04736445.1| hypothetical protein NgonP_06040 [Neisseria gonorrhoeae PID332]
 gi|268596868|ref|ZP_06131035.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268682120|ref|ZP_06148982.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268550656|gb|EEZ45675.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268622404|gb|EEZ54804.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
          Length = 356

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 58/331 (17%), Positives = 123/331 (37%), Gaps = 10/331 (3%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
              ++  +Y L     P   A ++ +   P+      K    ++    +   S++ L  +
Sbjct: 19  FAALVWLVYALGDTLTPFAVAAVLAYVLDPLVEWLQKKGLNRASASMSVMVFSLILLLAL 78

Query: 77  PLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            LL +    + +   L S++  L       +  WL +  GG      + +         +
Sbjct: 79  -LLIIVPMLVGQFNNLASRLPQLIGFMQNTLLPWLKNTIGG------YVEIDQASIIAWL 131

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            + T   +N +        + G   +    +++   + L++F  D    S  +  L    
Sbjct: 132 QAHTGELSNALKAWFPVLMKQGGNIVSSIGNLLLPPLLLYYFLLDWQRWSCGIAKLVPRR 191

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +P
Sbjct: 192 FAGAYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLMLVGLDSGFAIGMVAGILVFVP 251

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGGPIKLPFLPTF 313
                +   ++    +         L +W    +  F+    + P +VG  I L      
Sbjct: 252 YLGAFTGLLLATVAALLQFGSWNGILAVWAVFAVGQFLESFFITPKIVGDRIGLSPFWVI 311

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           F L+     MG +G+  G  L A+  V+ +E
Sbjct: 312 FSLMAFGELMGFVGMLAGLPLAAVTLVLLRE 342


>gi|269838060|ref|YP_003320288.1| hypothetical protein Sthe_2036 [Sphaerobacter thermophilus DSM
           20745]
 gi|269787323|gb|ACZ39466.1| protein of unknown function UPF0118 [Sphaerobacter thermophilus DSM
           20745]
          Length = 380

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 104/306 (33%), Gaps = 19/306 (6%)

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS 111
           + +    S    ++  +  M + +    F+      ++  LV ++          P ++ 
Sbjct: 70  LERLRIPSGIAVLLVYLVAMAVVVAIGWFVLPPLFGQVATLVDEI----------PNYVD 119

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI---FLDYCLSII 168
                    E W +       L+   E  + T G   +    SR   +        L ++
Sbjct: 120 R---YQAVRESWERLREQYPELEPF-EEQVATAGSRLLSTVGSRLAELPSELFSLFLDVL 175

Query: 169 FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLV 228
            + +           +   + SL         +++ R +   I        I+     ++
Sbjct: 176 SIFVISMLLVTTRGRLLSFILSLVSPDHRDTAERVMREMWDRIGYYVRAKLIVMTIIAVI 235

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
              A  + GVP  V L ++  +   +P  G  ++   +     ++G       +F    +
Sbjct: 236 TYVALIIIGVPYAVLLSIVVGLGEAVPRIGPWLARIPLLTIAALQG-WTTFLLVFGASLV 294

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
                   + P++ G  + +  L  F  ++ G   +G+ G F+     A++ V+++E I+
Sbjct: 295 IENAKGYAISPWVEGDQLDIHPLLVFVAVLVGAALLGVAGAFVAVPAAAMVQVMFEEVII 354

Query: 348 AIKENK 353
             +  +
Sbjct: 355 PWRRAQ 360


>gi|218283604|ref|ZP_03489576.1| hypothetical protein EUBIFOR_02168 [Eubacterium biforme DSM 3989]
 gi|218215753|gb|EEC89291.1| hypothetical protein EUBIFOR_02168 [Eubacterium biforme DSM 3989]
          Length = 368

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/323 (13%), Positives = 103/323 (31%), Gaps = 7/323 (2%)

Query: 36  SALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSK 95
            A +I      I       K+       +++ + +       +  +       +  +V  
Sbjct: 46  MAFVINLVMAKIEKRLNFMKKGKRATSLLLSLILIFLFVYFLITLVVPSLSEAIGVIVQV 105

Query: 96  VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASR 155
           +    ++     ++L D+            +L       I S   + + G+  +      
Sbjct: 106 LPKYFEN---AQKFLVDLFENNPQLANSINNLDIDWKNLIQSGINVISTGVTNVVGTTFN 162

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA----YWKKISRIVPKVI 211
              + ++   + + M I   +   +     Q    L              +   I+ +  
Sbjct: 163 VVTVIVNSVFNFVLMFIFAIYVLLEKERFVQLYHRLTNLYLSETVKRRMDRCLNIINQTF 222

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
            +   G  I A   G +      +  +P    +G +  ++ +IP        A+ ++++ 
Sbjct: 223 SAFIGGQCIEATILGTLCTLGMIILRMPYPAMIGTLVGVINIIPMIGAYIGGAIGMFMVF 282

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
             +   +    L+  I   I    + P +VG  + LP +     +V      G+ G+F+G
Sbjct: 283 TVSPIMSLWFLLYLCILQQIESNVIYPHVVGNSVGLPGIYVMMTVVIFGSLAGIPGMFLG 342

Query: 332 PVLMALIAVIWKESIMAIKENKE 354
              MA +  I    +   +  KE
Sbjct: 343 IPTMASVYKIGVLYLNRKERLKE 365


>gi|146313513|ref|YP_001178587.1| hypothetical protein Ent638_3881 [Enterobacter sp. 638]
 gi|145320389|gb|ABP62536.1| protein of unknown function UPF0118 [Enterobacter sp. 638]
          Length = 349

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/321 (15%), Positives = 118/321 (36%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +    +A+   V V
Sbjct: 14  LLKLACLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGIKRP--VAITIVVLV 71

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           M + +  L+ +    + E   ++ K                     +    L  + +   
Sbjct: 72  MLIVLTALVGVLAASLSEFSTMLPKYNKE-----------------LTRKALELQEMLPF 114

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + I  FA+           SI+ +++ + F   +   +  +L  
Sbjct: 115 LNLHMSPERMLQRMDSEKIMTFATTLMTGLSGAMASILLLVMTVVFMLFEVRHVPYKL-R 173

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V +   L   + ++  G+++     L GV   +  GV+  +
Sbjct: 174 FALNNPQIHIAGLHRALKGVSKYLALKTLL-SLWTGVIVWLGLTLMGVQFALMWGVLAFL 232

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA +S     I   +   I+    +     +   I+   L P ++G  + +  
Sbjct: 233 LNYVPNIGAVLSAVPPMIQAFLFNGIYECMLVGALFLVVHMILGNILEPRMMGHRLGMST 292

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 293 MVVFLSLLIWGWLLGPVGMLL 313


>gi|291459908|ref|ZP_06599298.1| permease [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417249|gb|EFE90968.1| permease [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 432

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/368 (13%), Positives = 106/368 (28%), Gaps = 27/368 (7%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES--------------STFLAV 64
           II   L  +     PV+   ++ +   P+Y     K  E               + F A 
Sbjct: 35  IIRAGLGRILNILTPVIYGAVMAYLMAPVYDLTERKLRERMERYFPGKRFPHSFARFAAT 94

Query: 65  IA-------TVSVMCLFIVP-----LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD 112
            +           +   ++P     L  L       +     K+    +        LS 
Sbjct: 95  FSALLLLLLVSGSLVYIMIPELMKSLTRLSSTLPDSITLYYEKISGLLKSYPEAREALSA 154

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
           +    +         S      ++    +    +  +            +  + +I M  
Sbjct: 155 LYEEAYGYFSGPGSSSGSGGGTLIPNLQMAALYLSKLSSGIWSTLTWVKNILIGLIVMAY 214

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
            L           + L +L          +    + ++     +G  + +I  G++    
Sbjct: 215 LLNLKELLIAQFHKLLFALLPRDAARSVVEELDYINRMFGGFIIGKILDSIIIGILTFFV 274

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
             +  +P  + + VI  I  +IP   P         L+   N        +   +   + 
Sbjct: 275 LSIMRMPYAMLVSVIVGITNVIPFFGPFIGAIPCFVLIFLANPLQGLYFAIAILVIQQLD 334

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKE 351
              + P ++G    L      F ++      G +G+ I  P    ++ +I + S   ++E
Sbjct: 335 GNVIGPRILGNSTGLSSFWVLFSILLFGGLFGFVGMIIAVPTWAVILNLIARISNRRLRE 394

Query: 352 NKEKISSN 359
               +SS 
Sbjct: 395 KGLPLSSE 402


>gi|321314121|ref|YP_004206408.1| putative integral inner membrane protein [Bacillus subtilis BSn5]
 gi|320020395|gb|ADV95381.1| putative integral inner membrane protein [Bacillus subtilis BSn5]
          Length = 350

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 56/354 (15%), Positives = 113/354 (31%), Gaps = 21/354 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G+ R+ I  ++   LY  K     +L   I  F    +         +       +    
Sbjct: 12  GVRRFSIFVVLTGVLYLFKSMINLILLTFIFTFLMDRLELVVRQFVSQFFRVSQRVVITF 71

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +  L  V L    +     +   + ++V   +H    P     IP     + ++      
Sbjct: 72  LYMLLAVLLTVGGFVFYPVVAAQIQQLVKQIKHIAYHPD---SIPFFDEITSVFGDINIS 128

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                          G + +  + +        + L ++  +I   FF  +   +S+ + 
Sbjct: 129 SYV----------KEGFNVVYTYLADIST----FGLQVVMALILSMFFLFEKKRLSEFMA 174

Query: 190 SLGEHLFPAYWKKIS---RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
                    ++++I+       +          IIA+   ++   A W+   P    L +
Sbjct: 175 KFKTSKLRVFYEEIAFFGSKFARTFGKVLEAQFIIALVNCILTFIALWIMHFPQLFGLSI 234

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +   + +IP  G  IS   +SI     G       + L       I    L P L+    
Sbjct: 235 MVFFLGLIPVAGVVISLIPLSIIAYSTGGGMYVLYIVLVIFAIHAIETYFLNPKLMSAKT 294

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +LP   TF  L+      G+ GL IG  +   +  I   +    +    + +S+
Sbjct: 295 ELPIFFTFTVLIFSEHFFGIWGLIIGIPIFVFLLDILDVTNKEDRSKGHRENSD 348


>gi|313898479|ref|ZP_07832016.1| putative membrane protein [Clostridium sp. HGF2]
 gi|312956861|gb|EFR38492.1| putative membrane protein [Clostridium sp. HGF2]
          Length = 403

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 81/246 (32%), Gaps = 7/246 (2%)

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI---IALFFF 177
           +   ++++  +    +    + TN I+ +   AS        +  S        +   + 
Sbjct: 145 DYRIENITQVEQFIQMPWEKIVTNVINLLSGSASGILSSATGFVSSFAVGFTGFMFSLYL 204

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA- 236
                +  +Q+  +          KI       +   F       + E  +L   Y++  
Sbjct: 205 LSGKENFIRQMRKVTAAFLGYGNSKIVFRYAARVNRIFSSFIGGQLTEACILWVLYYIFM 264

Query: 237 ---GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
                P    +  + A+ +M+P    +   +V   +++  +   +    ++  I  +  D
Sbjct: 265 RLFQFPYPELICTLIAVCSMVPVFGSMFAMSVGAIMMLSKDPLQSVWFIIFYQILSYFED 324

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             + P +VG  + LP L     +       G+ G+ +     A + V + E +      +
Sbjct: 325 NVIYPRVVGNSVGLPGLWVLLSIFVFGDLWGVFGMIMAVPTTACLYVFFTEYVNHRLRKQ 384

Query: 354 EKISSN 359
             I + 
Sbjct: 385 RLIVTE 390


>gi|300814732|ref|ZP_07094980.1| putative membrane protein [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300511119|gb|EFK38371.1| putative membrane protein [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 415

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 56/362 (15%), Positives = 125/362 (34%), Gaps = 18/362 (4%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE------ESS 59
           LN +GI +  I  +       +  F    + A +I            +K +         
Sbjct: 51  LNQKGISKIFITLLS-----IMFPFILGGVLAFMIKIVLNFFEEKLFNKIKSARFQKHKR 105

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
               +++   +  +  + L  +    +  + +L + +    Q  I   R ++ I      
Sbjct: 106 KISILVSIFVIFLIIFIILRIVVPQFISSISKLQTALPPLIQKAIDKSRNIAFINEYSDK 165

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIP---RFASRFGMIFLDYCLSIIFMIIALFF 176
            +    HLS  +    + E          I    + A       L   ++ +  +I   +
Sbjct: 166 MQKIYDHLSVSKIFDQIREFVKNQGDNSSISTAFQRAYSTATNILGGIVNFVLALITAIY 225

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWK----KISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
              D   +  Q   +   +F          + +++ +       G  I +   G+++   
Sbjct: 226 ILSDKEHLEYQSKRIVYSIFSKKTSGKIFHVFKLLHQNFEGFIRGQIIDSTVLGIIVFIF 285

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            +LA +P+   LGV+  +  ++P   P     +   L++  +   A    ++  I   + 
Sbjct: 286 SFLAKMPNATTLGVLAGVTNLVPIIGPFIGGFMGFVLIVIDDFSKAIIFVIFIFIMQQVE 345

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              + P LVGG + LP L T   +  G    G++G+++   L + I  +  E      + 
Sbjct: 346 SNLIYPKLVGGAVGLPALWTLIAITVGGSLFGVVGMWVFIPLTSTIYTLIGEYTKYKIDK 405

Query: 353 KE 354
           K+
Sbjct: 406 KD 407


>gi|251779664|ref|ZP_04822584.1| putative membrane protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243083979|gb|EES49869.1| putative membrane protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 382

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 117/327 (35%), Gaps = 5/327 (1%)

Query: 24  LYFLKGFFAPVLSALIIGFT--SWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
           +   + F      A I+ F    +    +  SK +       V   ++ M L  + + F+
Sbjct: 44  IVIFQPFIIGFSIAYILNFILKFYEKKLNVYSKLKSKRGLGLVFTYITAMLLIGLFIQFV 103

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               +  +  LV+ V           ++++ +   +  SE +   +++  +  I     +
Sbjct: 104 LPQLIQSIIGLVNDVPKFINEST---KFINKLMLDLNISEEYLPLINNNFNEFINYIIKI 160

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            TN +  +  F ++      +  L +I  I  L    +      +   ++          
Sbjct: 161 ATNLLPVLGGFVTKIASSIWNIVLGVIISIYLLIDKEKFCAMSKKVTYAIFYKNAAEKII 220

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +I+           +G  + +   G++      +  +P  + + VI  I  +IP   P  
Sbjct: 221 EITHRSNDTFGKFLMGKILDSFIIGILTFVILTIFRMPYAILISVIIGITNIIPFFGPFI 280

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               S  +++      A    +   +   I    + P ++G  I +      F ++   +
Sbjct: 281 GAIPSFIIILFVAPVKALWFLVIILVIQQIDGNIIGPKILGDSIGISAFWILFSILFAGK 340

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMA 348
            +GL+G+ IG  L A++  I KE + A
Sbjct: 341 FLGLIGMIIGVPLFAVVYSIIKEIVEA 367


>gi|149372808|ref|ZP_01891829.1| hypothetical protein SCB49_12634 [unidentified eubacterium SCB49]
 gi|149354505|gb|EDM43070.1| hypothetical protein SCB49_12634 [unidentified eubacterium SCB49]
          Length = 364

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/351 (15%), Positives = 131/351 (37%), Gaps = 18/351 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I     + I+   LY +K  F     A +I   + PI   F ++ + S+T  A   T+
Sbjct: 14  RSITIIAAVLILGWFLYSIKALFLFFGIAAVISLIARPIMFFFKTRLKFSNTL-ATFTTL 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L +  L+ +F   ++E  + ++++               D+      +  +     
Sbjct: 73  FLVILAVSLLIRIFVPIVIEQGQNIAEIDFDMVK--------RDLNELSIQASDFLGVEQ 124

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 I     +K+  +  +P F   F     D  + +  ++   FF  ++   I   +
Sbjct: 125 IDIIESIKKSEQIKSFDLGLVPSFFDVFISNLGDGLVGLFAVLFISFFLIKEENFIPSAV 184

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S  +      +  +   +  ++   F+G+ +      +       +  + + +A+ +I 
Sbjct: 185 TSFAKEGNEKRFLLVFTKIKNLLSRYFIGLMVQIFILSVFYSILLLVFDIDNAIAIAIIC 244

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGN--------IFNATCLFLWGAIELFIVDKTL-RPF 299
           A + ++P   P+    + + +++  N        +F   C    G     + D  + +P 
Sbjct: 245 AFLNIVPYLGPLIAGGLMMLIVLSNNLAADFSTELFPVLCYVFIGYCLAQLFDNLITQPV 304

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           + G  +K   L  F  ++ G    G+ G+ +   +   + V+ KE +   K
Sbjct: 305 IFGKSVKSHPLEIFVVILIGGFLFGIAGMILAVPVYTALKVMSKEFLSEYK 355


>gi|325109727|ref|YP_004270795.1| hypothetical protein Plabr_3176 [Planctomyces brasiliensis DSM
           5305]
 gi|324969995|gb|ADY60773.1| protein of unknown function UPF0118 [Planctomyces brasiliensis DSM
           5305]
          Length = 352

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 56/335 (16%), Positives = 121/335 (36%), Gaps = 26/335 (7%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +    I  S+Y L+    P + A+ +     PI  +   +   +    A I  V+ + +
Sbjct: 13  TLTAIAIGFSIYGLRTVLVPFVIAVFVVSGIGPILDALQIRLHVNRLLAAGITFVAGLVI 72

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             V    L+   +   +   +      +    V     ++P    A  +       P+  
Sbjct: 73  MFVLGSALWASTVELRQSAPAYRQRIQELVDRVENAFPNLPMQKKAEAV------TPEKN 126

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
               + FL       I   +S      L    + + ++I +FF           L    E
Sbjct: 127 AEAIDAFLDAMLHKGIATLSSA----MLYLITTGVVVLIYVFFML---------LGQSTE 173

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
               A W KI   + + +R      T++++  GL+ G    + G+P  +  GV+  ++  
Sbjct: 174 SSPSATWTKIDDQIREYLRL----KTVVSLITGLIFGGVLAMFGIPMALTFGVLAFLLNY 229

Query: 254 IPGGAPISFTAVSIYLLI---KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           IP   P+  T + + L+I   + ++     +    +   F+    + P L+G    L  +
Sbjct: 230 IPNIGPLVATVLPVPLIILNPEAHLLWIVAVIGSISAIQFVSGNIIEPKLMGDSTDLHPI 289

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
                L+      G++G+F+   + A + ++  + 
Sbjct: 290 VILLALMFWGMLWGIVGMFLATPITAGLKLVLDQF 324


>gi|59801203|ref|YP_207915.1| hypothetical protein NGO0789 [Neisseria gonorrhoeae FA 1090]
 gi|240014126|ref|ZP_04721039.1| hypothetical protein NgonD_05668 [Neisseria gonorrhoeae DGI18]
 gi|240016561|ref|ZP_04723101.1| hypothetical protein NgonFA_05224 [Neisseria gonorrhoeae FA6140]
 gi|240115637|ref|ZP_04729699.1| hypothetical protein NgonPID1_05225 [Neisseria gonorrhoeae PID18]
 gi|240117930|ref|ZP_04731992.1| hypothetical protein NgonPID_05637 [Neisseria gonorrhoeae PID1]
 gi|240121688|ref|ZP_04734650.1| hypothetical protein NgonPI_07968 [Neisseria gonorrhoeae PID24-1]
 gi|240128188|ref|ZP_04740849.1| hypothetical protein NgonS_06047 [Neisseria gonorrhoeae SK-93-1035]
 gi|260440550|ref|ZP_05794366.1| hypothetical protein NgonDG_05586 [Neisseria gonorrhoeae DGI2]
 gi|268601319|ref|ZP_06135486.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268603645|ref|ZP_06137812.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268686588|ref|ZP_06153450.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|59718098|gb|AAW89503.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|268585450|gb|EEZ50126.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268587776|gb|EEZ52452.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268626872|gb|EEZ59272.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
          Length = 356

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 58/331 (17%), Positives = 122/331 (36%), Gaps = 10/331 (3%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
              ++  +Y L     P   A ++ +   P+      K    ++    +   S++ L  +
Sbjct: 19  FAALVWLVYALGDTLTPFAVAAVLAYVLDPLVEWLQKKGLNRASASMSVMVFSLILLLAL 78

Query: 77  PLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            LL +    + +   L S++  L       +  WL +  GG      + +          
Sbjct: 79  -LLIIVPMLVGQFNNLASRLPQLIGFMQNTLLPWLKNTIGG------YVEIDQASIIAWF 131

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            + T   +N +        + G   +    +++   + L++F  D    S  +  L    
Sbjct: 132 QAHTGELSNALKAWFPVLMKQGGNIVSSIGNLLLPPLLLYYFLLDWQRWSCGIAKLVPRR 191

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +P
Sbjct: 192 FAGAYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLMLVGLDSGFAIGMVAGILVFVP 251

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGGPIKLPFLPTF 313
                +   ++    +         L +W    +  F+    + P +VG  I L      
Sbjct: 252 YLGAFTGLLLATVAALLQFGSWNGILAVWAVFAVGQFLESFFITPKIVGDRIGLSPFWVI 311

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           F L+     MG +G+  G  L A+  V+ +E
Sbjct: 312 FSLMAFGELMGFVGMLAGLPLAAVTLVLLRE 342


>gi|78223970|ref|YP_385717.1| hypothetical protein Gmet_2774 [Geobacter metallireducens GS-15]
 gi|78195225|gb|ABB32992.1| protein of unknown function UPF0118 [Geobacter metallireducens
           GS-15]
          Length = 348

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/311 (13%), Positives = 100/311 (32%), Gaps = 13/311 (4%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESST-FLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
            L + ++ +   P       +    S   +A+   ++V+ LF V  +  F     E    
Sbjct: 35  FLLSFVLAYLLDPAVVLLERRGLRRSWGIVALYLVLTVLSLFFVAFIVPFASIRWEAFLK 94

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
                L     I +   +  +P G      W    +  Q  K+ +           +   
Sbjct: 95  GLPAYLQKGKAIVLSWKMQALPAGADDEWRWLFETATGQIDKMAAR----------LGAG 144

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
                  F+    +++   I +FF       I   + +            + R +   + 
Sbjct: 145 VYEAATGFVFNLFNLVLAPILIFFMLWYKNEIKTGIITWLPRSRREAVLTLGREINASVG 204

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
               G  I++    ++   A ++ G+      G+   + +++P    I  T   ++    
Sbjct: 205 GYIRGQLIVSAIVAILSIIALFILGIDYPFLNGIFAGLASVLPFIGVILATLPPLFFAYV 264

Query: 273 GNIFNATCLFLWGAIEL--FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
                   L + GA  +  F+    ++P +    + L  L T   ++     MG  G+ +
Sbjct: 265 QYQSGFVLLKVIGAFAVIYFLEGYVVKPLVFKESMDLNPLVTIMVVMLFGELMGFWGILL 324

Query: 331 GPVLMALIAVI 341
              + A + ++
Sbjct: 325 AIPIAAAVRIV 335


>gi|323530014|ref|YP_004232166.1| hypothetical protein BC1001_5738 [Burkholderia sp. CCGE1001]
 gi|323387016|gb|ADX59106.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1001]
          Length = 381

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 57/340 (16%), Positives = 124/340 (36%), Gaps = 9/340 (2%)

Query: 8   PQGIMRWMIMFIILVSL-YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           P+  M W  + +    L + L+    P L   +I +   P     + ++    T  A+  
Sbjct: 22  PRQAMLWGALAVGAGLLMWILRPVLTPFLLGGLIAYMLQPGVEWLVRRRIPR-TLAALAM 80

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +    + ++  L +F     E+  L S++         +  WL   P         +  
Sbjct: 81  MLLFALVIVLLGLLVFAVIQKELPALASQIPG---FTARINAWLQ--PKLGLVGLESSFD 135

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           LS  +++          +      R+    G   +    +++ + + L++   D   +  
Sbjct: 136 LSSLRNVLTSRLAGGGQSIEVAAWRYVRTGGSALVTVVGNVVVVPLVLYYLLYDRRKVFA 195

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           +++SL    +    + +   + +++     G  ++ +        A  LAG+   + +G+
Sbjct: 196 RIESLVPRPWLGKTRALVTEMDQMLSQYLRGQLLVMVVLATFYPIALSLAGLGVALPVGL 255

Query: 247 ITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            T +   IP  G A     A+   LL  G+ +    + L  A+   +    L P L+G  
Sbjct: 256 FTGLAVFIPYVGFATGLLLAMLAALLQFGDWYGFGAVALIYAVGQVLETAFLTPRLIGER 315

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           I L  L   F L+      G  G+ +   + A++    +E
Sbjct: 316 IGLHPLAVIFALLAFGEMFGFFGVLLALPVSAILVTALRE 355


>gi|304407575|ref|ZP_07389227.1| protein of unknown function UPF0118 [Paenibacillus curdlanolyticus
           YK9]
 gi|304343526|gb|EFM09368.1| protein of unknown function UPF0118 [Paenibacillus curdlanolyticus
           YK9]
          Length = 372

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/319 (15%), Positives = 106/319 (33%), Gaps = 5/319 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +  + +++I+ +   L     PV  +  I     P  + +++K     +  + I+ +  
Sbjct: 16  ALIALTVYLIMFAFSHLYKIATPVFLSFFIYIFIEPP-ARWMNKLGIKKSIASAISVLLF 74

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             + +   L   Y    +   L+ K+ +  Q         SD         L    L   
Sbjct: 75  TLVILSVFLGTGYIIADQANGLIQKLPVYQQIMKDQVALHSDW-IAAKMDTLPPDLLGQF 133

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
             +     +  +     F+   +S     F  +  +    II  +F   +     +    
Sbjct: 134 DKVVDYVTSKGQHLATQFLLTISSYL-TSFSAFIFNFAIGIILAYFLSVEIKDWKRVAAD 192

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              + F   +  +   V K I +       +     +V+  +  L GV +   + V++AI
Sbjct: 193 KTPNTFKKAFSFLRDNVFKGIGAYLKSQLKLISITFIVIFVSLLLLGVDNAFTISVVSAI 252

Query: 251 MAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
             ++P  G    F    IYL I G    A  +       + +  + L P + G  + +  
Sbjct: 253 FDVLPLLGVGTVFVPWIIYLFIVGKTTLAIWVSALFLTVV-LARQILEPKITGDTLGVSA 311

Query: 310 LPTFFGLVGGVRTMGLLGL 328
                 ++  +   G+ G+
Sbjct: 312 FTMLAFMIISLSLFGIAGV 330


>gi|253573458|ref|ZP_04850801.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251846986|gb|EES74991.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 358

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/335 (15%), Positives = 115/335 (34%), Gaps = 18/335 (5%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           R + +  +++ LYF +     +L   I+ +    +++       +       +  + +  
Sbjct: 15  RVLALLFVVLVLYFARSMLNMLLITFILTYLINRLHNFISRNVAKVIRINRTVTVLFIYV 74

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           + I  L    YY M  +   ++ +V         P  L D P   +  E           
Sbjct: 75  VLITLLGSAIYYYMPVLLTELTDLVNQVISFYSNPPVLPDNPILNYIVEYLKDIDLSAYI 134

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                      NG  F+    +  G    ++ L++   I+   FF  +   ++       
Sbjct: 135 ----------NNGFTFLLSTLTDIG----EWSLNLFIAIVLSLFFLLEKEKVTNFAVQFR 180

Query: 193 EHLFPAYWKKIS---RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           E      +K++    R   +          +IA    ++     W+ G P+ +AL ++  
Sbjct: 181 ESRIGGLFKELEYFGRKFVQSFGKVIEVQFLIATVNAVLSTIFLWILGFPNLIALAIMIF 240

Query: 250 IMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++ ++P  G  IS   +       G +     + +  A+   +    L P  +     LP
Sbjct: 241 LLGLVPVMGVIISLIPLCAIAFKIGGLIKIVYVLIMIALVHAVETYFLNPKFMSNKTHLP 300

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              TF  L+     +G+ GL +G  +   +  I +
Sbjct: 301 IFFTFLILLVSEHFLGVWGLIVGVPIFIFLLDIVE 335


>gi|168218240|ref|ZP_02643865.1| putative domain of unknown function [Clostridium perfringens NCTC
           8239]
 gi|182379751|gb|EDT77230.1| putative domain of unknown function [Clostridium perfringens NCTC
           8239]
          Length = 345

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/322 (16%), Positives = 116/322 (36%), Gaps = 19/322 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
            +     VL + I  +   P+Y     + + +  FLA+   +SV+ L +  L  L     
Sbjct: 34  FRDIIFIVLVSGIFAYILKPLYRFLCERTKINKNFLAMSIVLSVIFLILFFLTVLIPSMF 93

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E +     +            +++D+   M   EL          +  + E  +     
Sbjct: 94  KEGESFDGLINGIEF-------FINDLIMKMKFMEL---------GIFDVIEAQVTEKLN 137

Query: 147 DFIPRFASRFGMIFLDY---CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             +  FA+      + +    L+   + +  ++F   G  +S +          A  K +
Sbjct: 138 ILLVSFATSIINNLISFSENILAFAVIPVLAYYFLAYGDLLSNKFLYCCPMEKRALLKNL 197

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
            R V KV+    LG  ++++  G++      + G+   + L  + A++ +IP    +   
Sbjct: 198 GRDVDKVLGKYILGQLLLSLLVGVMTFIGMLILGIKFPLLLAFLNALLNIIPYFGAVLGA 257

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             +I + +         + L   I   I    + P +    I +  +     L+ G +  
Sbjct: 258 IPAIVVALVEGPNKILWVILTFLIIQQIEGNLIAPKITAESIDMHPILIIILLLIGEQIG 317

Query: 324 GLLGLFIGPVLMALIAVIWKES 345
           GLLG+     +  +I V++ + 
Sbjct: 318 GLLGMVFIVPIAVVIKVLFDDW 339


>gi|57864913|gb|AAW57087.1| conserved hypothetical protein [cyanobacterium endosymbiont of
           Rhopalodia gibba]
          Length = 363

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 56/342 (16%), Positives = 121/342 (35%), Gaps = 10/342 (2%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
            +L  L+ L+     ++ A++I  T  P+  S+  +         +I  + ++ L     
Sbjct: 22  FLLTILWQLRNLLVILMIAVVIASTLAPLVRSWEKR-GIPPWLAVIIVYLGLLTLITGIS 80

Query: 79  LFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           L L    + +++ L+ K+    +  G     W +           +   L   QSL   +
Sbjct: 81  LILGPTIIAQIQRLLQKLPGYLDILGTEFQNWATIRGFTQPEVLEFINQLLDLQSLVSWT 140

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            ++ +   I              L    ++I  ++   +       +   + +L  H + 
Sbjct: 141 LSYSQKFLIG-----VGGVTRGILGGVFNVILAVLLSGYMLSGSKKLIGGIVNLFPHPWD 195

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV-PSHVALGVITAIMAMIPG 256
              +     + + +     G  +I+   G  +       G+    + LG I  I  +IP 
Sbjct: 196 KRLEAQVVPISQRMGGYIQGRLLISFILGSAISLGLRFLGISEFALGLGTIAGITNLIPF 255

Query: 257 -GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G  +      I  + +G       L L+      +    L P LVG  + +  L     
Sbjct: 256 FGPVLGSIPALIVAIAQGGWVYLWVLLLF-LFIQNLETYVLDPLLVGSSVNVSPLYQLLA 314

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           ++ GV+ +G+LG  I P  +A   V+ +   +  K   ++ +
Sbjct: 315 VLSGVQILGILGALIVPPWVAGAGVLLQNLYLIPKLQAQEQA 356


>gi|289209220|ref|YP_003461286.1| hypothetical protein TK90_2059 [Thioalkalivibrio sp. K90mix]
 gi|288944851|gb|ADC72550.1| protein of unknown function UPF0118 [Thioalkalivibrio sp. K90mix]
          Length = 406

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/343 (13%), Positives = 116/343 (33%), Gaps = 30/343 (8%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            ++++++   + F      P+  A ++    +P+          S               
Sbjct: 36  ALLVWLLGQVVSFFYALLLPLSVAGVLSLILYPVVRWLQRIAGFSRMGAVS--------- 86

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
                     +G++ +  +V  V++       V  ++   P    A   +     +  + 
Sbjct: 87  --------SLFGVVLIALVVVSVLVVPTASHQVQEFIKGAP--ELAENAYESFSRNFPNA 136

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDY---CLSIIFMIIALFFFYRDGFSISQQLDS 190
                + L+   +  I       G   + Y    + + F+ + LFF    G  + +    
Sbjct: 137 TERVASMLEELDLQSIMPNLEGVGSQLMHYVTVVVGLAFVPLYLFFALLSGERLKEGGRE 196

Query: 191 LGEHLFPAYWKKIS---RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +     P   +++    R+    + + F G  +IA+  G++L   + L G+ + +  G++
Sbjct: 197 VLSVFRPQTQRELMFLGRLFVGYVTAFFQGQVVIALIMGVLLAVGFSLIGLQAAILFGLM 256

Query: 248 TAIMAMIPGGAPIS----FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
              + ++P    I        V+      G +     + +  A+   I    L P ++  
Sbjct: 257 LGFLNIVPYLGTIVGLTLALPVAYLQPEGGGLTLVALVLVVFAVVQLIESWLLTPKIMAD 316

Query: 304 PIKLPFLPTFFGLVG-GVRTMGLLGLFIGPVLMALIAVIWKES 345
              L        +   G    G++G+ +   L A +A +WK  
Sbjct: 317 RSGLHPAIVVISIFFWGTALGGIIGMILAVPLSAFVASLWKHF 359


>gi|253731994|ref|ZP_04866159.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724235|gb|EES92964.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 185

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 70/170 (41%)

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           ++    F   +  +   +   + S   G  I++   G++L   Y + G+   + L  I A
Sbjct: 1   NIMPPKFRKDFHDLLEKMSVQVGSYIQGQIIVSFCIGILLFIGYSVIGLKYSLVLASIAA 60

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           + +++P   P    + +I +    + +    L +   +  F+    + P ++G  +K+  
Sbjct: 61  VTSVVPYLGPTIAISPAIVIAAITSPWMLLKLAVVWTLVQFVEGHFISPNIMGKTLKIHP 120

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           L   F L+   + +G++G+ +G    A++ V+        K    +   N
Sbjct: 121 LTIIFILLCAGKLLGIVGVILGIPGYAILKVLVTHLFQLFKRRYNRFYGN 170


>gi|237797091|ref|YP_002864643.1| sporulation integral membrane protein YtvI [Clostridium botulinum
           Ba4 str. 657]
 gi|229261548|gb|ACQ52581.1| sporulation integral membrane protein YtvI [Clostridium botulinum
           Ba4 str. 657]
          Length = 351

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/333 (14%), Positives = 114/333 (34%), Gaps = 26/333 (7%)

Query: 15  MIMFIILVSLYFL-----KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           +I+F I+ +  FL       +  P + A +         S  I K +  ++  + I T+ 
Sbjct: 11  LILFFIIYTTSFLIFFKTLSYTLPFVLAFLFALVLKKPASYLIKKLKIKNSLASFIVTLI 70

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              + I  L +     + E+ +                          +   ++  +L+ 
Sbjct: 71  FFSIIITLLFWGINLLVHEVVDFGRNAQAYLYSHEEE--------ISNYVDNIYRYYLNL 122

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY----------CLSIIFMIIALFFFYR 179
           P S+    E  +  +            G I   +           + I+F +++ +FF +
Sbjct: 123 PPSIIDSIEKTIGNSFSKISNIIVFITGKIVSSFIGLLTSIPYILMLILFTLLSTYFFTK 182

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D    + ++  +  +   + +  I     K++    L    +           +++  + 
Sbjct: 183 DITKHNNKISKIMFNEHSSKFSHIYLESKKMLNGYILSYLTLIGITFFETLIIFFIFNIK 242

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
             +   +  AI   +P  G    +  ++ IY+L+  N      L +     + I+ + L 
Sbjct: 243 YSIMFSITAAIADFLPILGIGTIYVPLALIYILVYKNYVVGIGLLI-SYAAVSIIRQILE 301

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           P L+   + L  +     +  G++  G+ G+F 
Sbjct: 302 PKLLSSSLGLHPISILAAIFIGLKANGISGMFF 334


>gi|213691447|ref|YP_002322033.1| protein of unknown function UPF0118 [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213522908|gb|ACJ51655.1| protein of unknown function UPF0118 [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 550

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 71/212 (33%), Gaps = 2/212 (0%)

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           ++T+ +      A         + L+++ +++  ++    G  + +             +
Sbjct: 175 IQTSWVTDFAGTAMSTVGGLFSFLLNLMTVVMTTYYISAAGPKLRRSFCQWLAPNTQRRF 234

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA-MIP-GGA 258
             +  +    I S     +I+A+   +       +  VP  + L +   +++  IP  G 
Sbjct: 235 LLVWTVAQGQISSFLFSRSILALINAICTAIFLEILHVPYWLPLALFCGVVSQFIPTVGT 294

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            I      ++         A  + ++  +   I +  L P +    + +     F  ++ 
Sbjct: 295 YIGGALPVLFAWGNRGWTYAVAVLVFIIVYQQIENLILSPRISQRTMDINAAVAFLSVLA 354

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
                G  G F+   + A +  I++      +
Sbjct: 355 FGSLFGAFGAFLALPVTASLQAIFRAYTKRYE 386


>gi|161524877|ref|YP_001579889.1| hypothetical protein Bmul_1704 [Burkholderia multivorans ATCC
           17616]
 gi|189350373|ref|YP_001946001.1| putative permease [Burkholderia multivorans ATCC 17616]
 gi|160342306|gb|ABX15392.1| protein of unknown function UPF0118 [Burkholderia multivorans ATCC
           17616]
 gi|189334395|dbj|BAG43465.1| putative permease [Burkholderia multivorans ATCC 17616]
          Length = 650

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 65/193 (33%), Gaps = 5/193 (2%)

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
           + A  F    +    +I  +I+   F       + ++L  L                 + 
Sbjct: 192 QLAQGFLSPVVSPLATIGIVIVTAIFILLQRADLRERLIRLAGSHDMHRTTTAMSDAARR 251

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
           +   FL    + +  G VL     + G+P  +  GVI  +M  +P  G  I+    +I L
Sbjct: 252 LSRYFLAQLCVNVCVGAVLSLGLAVIGLPGALLFGVIAGLMRFVPYVGVWIAALPATI-L 310

Query: 270 LIKGNIFNATCLFLWGAIELF--IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
               +   +  + +     +      + L P + G    L  +      +      G +G
Sbjct: 311 AAAMSPGWSMIVAILVLFSVTEVAAGQFLEPLVYGHSTGLSPIAVIVAAIFWSWLWGAVG 370

Query: 328 LFIG-PVLMALIA 339
           L +  P+ + L+ 
Sbjct: 371 LVLSTPLTLCLVI 383


>gi|296454763|ref|YP_003661906.1| hypothetical protein BLJ_1638 [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296184194|gb|ADH01076.1| protein of unknown function UPF0118 [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 563

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 71/212 (33%), Gaps = 2/212 (0%)

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           ++T+ +      A         + L+++ +++  ++    G  + +             +
Sbjct: 175 IQTSWVTDFAGTAMSTVGGLFSFLLNLMTVVMTTYYISAAGPKLRRSFCQWLAPNTQRRF 234

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA-MIP-GGA 258
             +  +    I S     +I+A+   +       +  VP  + L +   +++  IP  G 
Sbjct: 235 LLVWTVAQGQISSFLFSRSILALINAICTAIFLEILHVPYWLPLALFCGVVSQFIPTVGT 294

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            I      ++         A  + ++  +   I +  L P +    + +     F  ++ 
Sbjct: 295 YIGGALPVLFAWGNRGWTYAVAVLVFIIVYQQIENLILSPRISQRTMDINAAVAFLSVLA 354

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
                G  G F+   + A +  I++      +
Sbjct: 355 FGSLFGAFGAFLALPVTASLQAIFRAYTKRYE 386


>gi|255037065|ref|YP_003087686.1| hypothetical protein Dfer_3310 [Dyadobacter fermentans DSM 18053]
 gi|254949821|gb|ACT94521.1| protein of unknown function UPF0118 [Dyadobacter fermentans DSM
           18053]
          Length = 354

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 55/328 (16%), Positives = 121/328 (36%), Gaps = 20/328 (6%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           ++V++Y  +    P+  A ++     P+    +         +A+   +++  L +  + 
Sbjct: 1   MMVAIYLGQDIIVPLALAGLLAVLLRPLEQRLMRM--GIPKLIAITLALTLAILVVSAVA 58

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            L    + +  +   K+     H     R W+       ++     +      +     E
Sbjct: 59  VLISMQVADFSDEWPKLKRNIDHFYRDARRWIRR----EYSVSYRQQAEYLKNAQTKTLE 114

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
           TF                G +       I+  I      Y     I   +    E     
Sbjct: 115 TFQGPET----------LGAVTGPLGTLILIPIYTFLLLYYRAMLIHFSVVLFAEEQK-H 163

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              +I   +  +I+S  +G+ +      ++  +   +  V   + LGV+ AI+ ++P   
Sbjct: 164 RVLEILGEIKSIIQSYMVGLLLETTAVAVLNSAGLLVLNVQYAILLGVMAAILNLVPYIG 223

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWG-AIELFIVD-KTLRPFLVGGPIKLPFLPTFFGL 316
            +  TA+++ +    +      L + G  I + I+D   L PF+VG  +K+  L +  G+
Sbjct: 224 GLVATALAVMVTFISHPEIDVLLGVVGIFIVVQIIDNNFLVPFIVGSKVKINALVSIVGV 283

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           + G    GL G+F+    +A++ VI+  
Sbjct: 284 LVGGALAGLSGMFLSIPAIAMMKVIFDR 311


>gi|92114548|ref|YP_574476.1| hypothetical protein Csal_2430 [Chromohalobacter salexigens DSM
           3043]
 gi|91797638|gb|ABE59777.1| protein of unknown function UPF0118 [Chromohalobacter salexigens
           DSM 3043]
          Length = 360

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 56/315 (17%), Positives = 113/315 (35%), Gaps = 26/315 (8%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
              +LS  I    + P++           + L  +  + V+   +  LL   +   +E  
Sbjct: 38  IPILLSLFIAVICTSPVHWLHERGLGMRLSVLVTLLILGVLVTLLGALLGNSFATFMEAL 97

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
             + +     +H + V RWL+                  PQ +   S  F  ++  D++P
Sbjct: 98  PKLQE--QLQEHYLAVLRWLAG-----------QGISIDPQGI---SRLFDTSSATDWVP 141

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
            F    G +     + ++ +I  LF        +S+ L +    L             + 
Sbjct: 142 VFLGSVGNLLSQSVVIMLLVIFMLFETLDFRNKVSRALLNPAPSLKRFT------EFSRN 195

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
           ++      T+I++  G+++  +  L GV   +  G +   +  IP  G+ ++     +  
Sbjct: 196 LKRYLAIKTVISLVTGVLVWGSCLLIGVDFALLWGTLAFCLNYIPNIGSALAAVPAVLLT 255

Query: 270 LIK--GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           L    G +F A  L        F +   + P ++G  + L  L  F  LV      G +G
Sbjct: 256 LAMPEGGLFKAMVLAGAYLAINFFMGNIIEPRVMGRTMGLSTLVAFLSLVVWGWIFGPVG 315

Query: 328 LFIG-PVLMALIAVI 341
           + +  P+ M L   +
Sbjct: 316 MLLSVPLTMTLKIAL 330


>gi|329957470|ref|ZP_08297945.1| hypothetical protein HMPREF9445_02825 [Bacteroides clarus YIT
           12056]
 gi|328522347|gb|EGF49456.1| hypothetical protein HMPREF9445_02825 [Bacteroides clarus YIT
           12056]
          Length = 376

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/338 (15%), Positives = 118/338 (34%), Gaps = 23/338 (6%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L     P   A +I +  +P+ + F  + +  +  +++   +  + +      +L    M
Sbjct: 31  LSSVLLPFFIAWLIAYLIYPLVTFFQYRLKLKNRIVSIFCALLALLIVGAGTFYLLVPPM 90

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
           ++    V  +         + ++ S            ++ L     +K ++E F K N +
Sbjct: 91  IQECGRVQAL---------LVQYFSHGTYNSNVPTSLSEFLRDNIDVKFITELFNKENLL 141

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR-------DGFSISQQLDSLGEHLFPAY 199
           D +     R     L   + ++F +  +F           D  SI++    L    + ++
Sbjct: 142 DALKEAVPRLWS-LLSDSIDLLFSVFTIFIILLYIIFILLDYESIAEGWTHLVPLKYRSF 200

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
              I   V   +   F G   +A+  G++    + +   P  + LG+    + M+P    
Sbjct: 201 VVGILNDVKVGMNRYFRGQAFVALCVGILFSIGFLIIDFPLAIGLGLFIGALNMVPYLQI 260

Query: 260 ISFTAVSIYLLIKGNIFNATCLFL------WGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           I F    I  ++K +        +         +   I D  + P ++G    L      
Sbjct: 261 IGFVPTIILAILKASDTGGNFWIIIASAMAVFIVVQAIQDGFIVPRVMGKITGLNPAIIL 320

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             L      MG+LG+ I   L  L+   ++  I+  + 
Sbjct: 321 LSLSIWGSLMGMLGMIIALPLTTLMLSYYQRFIINREN 358


>gi|148821398|ref|YP_001286152.1| transmembrane protein [Mycobacterium tuberculosis F11]
 gi|148719925|gb|ABR04550.1| conserved transmembrane protein [Mycobacterium tuberculosis F11]
          Length = 367

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 93/278 (33%), Gaps = 12/278 (4%)

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           AV  T+ ++  F V    L +     +  L   V    +      RWL + P  +   ++
Sbjct: 73  AVAVTLVLLSGFAVLGGILTFVVSQFIAGLPHLVTEVERSIDSARRWLIEGPAHLRGEQI 132

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                +  ++L+              +   A        +   + + ++  L FF   G 
Sbjct: 133 DNAGNAAIEALRNNQAK---------LTSGALSTAATITELVTAAVLVLFTLIFFLYGGR 183

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           SI Q +            +   R     +        ++A+ +   +G+   + GVP  +
Sbjct: 184 SIWQYVTKAFPASVRDRVRAAGRAGYASLIGYARATFLVALTDAAGVGAGLAVMGVPLAL 243

Query: 243 ALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L  +    A IP    +   F AV + LL KG I  A            +    L+P +
Sbjct: 244 PLASLVFFGAFIPLIGAVVAGFLAVVVALLAKG-IGYALITVGLLIAVNQLEAHLLQPLV 302

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           +G  + +  L     +  G    G++G  +    +A  
Sbjct: 303 MGRAVSIHPLAVVLAIAAGGVLAGVVGALLAVPTVAFF 340


>gi|255656022|ref|ZP_05401431.1| hypothetical protein CdifQCD-2_10054 [Clostridium difficile
           QCD-23m63]
 gi|296450549|ref|ZP_06892303.1| conserved hypothetical protein [Clostridium difficile NAP08]
 gi|296879329|ref|ZP_06903324.1| conserved hypothetical protein [Clostridium difficile NAP07]
 gi|296260624|gb|EFH07465.1| conserved hypothetical protein [Clostridium difficile NAP08]
 gi|296429872|gb|EFH15724.1| conserved hypothetical protein [Clostridium difficile NAP07]
          Length = 361

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/318 (11%), Positives = 105/318 (33%), Gaps = 4/318 (1%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           FF+P L A+++     P+   F  K +        ++ + +  +    +  L       +
Sbjct: 42  FFSPFLLAILLALLLNPLVMLFEVKFKAHRLLAIFLSYIFIGFILAFAIRLLIPSIANTL 101

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             L++++ +       +  ++      +   +    H+ H     +   +          
Sbjct: 102 NRLINEMPMYTD---YINSFIEKNMSNIDFLKTLIPHIQHSLDNVLKEASNFIGKISKNF 158

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
             +      +  +  +  I  I  ++   +      + L S           +  R    
Sbjct: 159 LIYTLSISSMLFNMTMGFILSIYIIYDKEKIALGFKRFLYSSTTRNKADSIIEFFRTTHD 218

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAY-WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           +     LG  + ++  G++    + ++  + + + L  I  +  +IP   P       I 
Sbjct: 219 IFYDYLLGRILDSLIIGIIAFLGFQFVIRIENALFLASIIFLGNIIPYFGPFIGAIPPIA 278

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           + I  +      +  +  I   +    + P ++G  + +  +     ++ G    G +G+
Sbjct: 279 MTILYSPQKTIWVIAFLFILQQLDGNFIEPKVMGNQVGIGAIWVISAILVGQSLFGFIGV 338

Query: 329 FIGPVLMALIAVIWKESI 346
           F+   + A++     + I
Sbjct: 339 FLSVPIAAVVKTYVDKYI 356


>gi|194098586|ref|YP_002001648.1| Transporter, putative [Neisseria gonorrhoeae NCCP11945]
 gi|193933876|gb|ACF29700.1| Transporter, putative [Neisseria gonorrhoeae NCCP11945]
 gi|317164255|gb|ADV07796.1| Transporter, putative [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 359

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 58/331 (17%), Positives = 122/331 (36%), Gaps = 10/331 (3%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
              ++  +Y L     P   A ++ +   P+      K    ++    +   S++ L  +
Sbjct: 22  FAALVWLVYALGDTLTPFAVAAVLAYVLDPLVEWLQKKGLNRASASMSVMVFSLILLLAL 81

Query: 77  PLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            LL +    + +   L S++  L       +  WL +  GG      + +          
Sbjct: 82  -LLIIVPMLVGQFNNLASRLPQLIGFIQNTLLPWLKNTIGG------YVEIDQASIIAWF 134

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            + T   +N +        + G   +    +++   + L++F  D    S  +  L    
Sbjct: 135 QAHTGELSNALKAWFPVLMKQGGNIVSSIGNLLLPPLLLYYFLLDWQRWSCGIAKLVPRR 194

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +P
Sbjct: 195 FAGAYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLMLVGLDSGFAIGMVAGILVFVP 254

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGGPIKLPFLPTF 313
                +   ++    +         L +W    +  F+    + P +VG  I L      
Sbjct: 255 YLGAFTGLLLATVAALLQFGSWNGILAVWAVFAVGQFLESFFITPKIVGDRIGLSPFWVI 314

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           F L+     MG +G+  G  L A+  V+ +E
Sbjct: 315 FSLMAFGELMGFVGMLAGLPLAAVTLVLLRE 345


>gi|294497736|ref|YP_003561436.1| hypothetical protein BMQ_0969 [Bacillus megaterium QM B1551]
 gi|294347673|gb|ADE68002.1| putative membrane protein [Bacillus megaterium QM B1551]
          Length = 344

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 57/333 (17%), Positives = 117/333 (35%), Gaps = 25/333 (7%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           ++     +L   I  F    +  +   K   +ST + ++  ++++    +         M
Sbjct: 29  IRSMLQLLLFTFIFTFLIGRLQQTLRRKLPLNSTLILIVIYIALIGALGIVGYVYIPVIM 88

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++ ELV K++   +H  P   +++ I                  +LK           I
Sbjct: 89  TQVTELVQKLMYFYKH-PPDNTFVTYI----------------IDNLKRFKSPENIQQNI 131

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK---I 203
           D +  + S  G +     L+++  +  L     +   I +    L +     ++K+   +
Sbjct: 132 DLVYSYLSNIGKVSAQVFLALLLSLFFL----LEKSRIHRLFVQLEQSRLGWFFKEAGYL 187

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISF 262
            R              IIA    ++   A W+ G P+ +ALGV+  ++ ++P  G  +S 
Sbjct: 188 GRKFVNSFGKVIEVQFIIAFVNSILSVIALWVLGFPNLLALGVMVFLLGLVPVLGVFVSL 247

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             +       G       + +   +   +    L P L+     LP   TF  LV G   
Sbjct: 248 IPLCTIAYSLGGGVKVLSVLIMVVVLHALESYVLNPKLMSSKTNLPTFITFIILVFGEHF 307

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G+ GL +G  +      +           KE+
Sbjct: 308 LGVWGLILGIPIFIFFLDLVGVDSAQQLSKKEE 340


>gi|330431037|gb|AEC16096.1| putative transport protein [Gallibacterium anatis UMN179]
          Length = 347

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 55/327 (16%), Positives = 122/327 (37%), Gaps = 19/327 (5%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + IIL  +        P L AL +     P+ +  +  K     +LAVIA + ++ + + 
Sbjct: 20  LVIILAGIKSAVEIIVPFLLALFLAIVCTPLINFLVKLKV--PLWLAVIALLGLIVIALT 77

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
               L    + E     + +    Q        L+ I           K +        +
Sbjct: 78  FFAGLVGTAVNEFS---ASIPTYKQLLAQRIAGLAAIMDRFDLYRFLPKTI--------V 126

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            E       +  I R  +    +  +  + ++ ++  LF    +  S+ Q+L    ++  
Sbjct: 127 EEHLDPNIIMGLIRRLLTGISGVITNGFVLLLIVVFMLF----EAPSMKQKLAIFFQNKQ 182

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
                +  + V   + S     T +++  G+++ +A  + G+   V  G +  ++  IP 
Sbjct: 183 ERKELENIQRVLSSVISYLAIKTFVSLLTGVLVWAALAILGIQYAVLWGTVAFLLNYIPN 242

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ ++   V +  LI     +   + +   +   I+   + P L+G  + L  L  F  
Sbjct: 243 IGSVLAAIPVVVQALILNGYSDGLLVAIAFLVINMIIGNIIEPRLMGRTLGLSTLVVFIS 302

Query: 316 LVGGVRTMGLLGLFIG-PVLMALIAVI 341
           L+     +G +G+ +  P+ MA+   +
Sbjct: 303 LIFWGWLLGSVGMLLSVPLTMAVKIAL 329


>gi|309800181|ref|ZP_07694366.1| membrane protein [Streptococcus infantis SK1302]
 gi|308116189|gb|EFO53680.1| membrane protein [Streptococcus infantis SK1302]
          Length = 223

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 74/213 (34%), Gaps = 2/213 (0%)

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            N ++ +           +   L II   + L +   DG      L+             
Sbjct: 2   QNILNSVTNSVGSVLSALVSTVLIIIMTPVFLIYLLLDGHKFLPMLERTILKRDKLNISG 61

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
           +   +   I     G++I A+  G +    Y + G+   +   + + +  +IP  G  I 
Sbjct: 62  LLTNLNTTISRYISGVSIDAVIIGCLAFIGYSMIGLRYALVFAIFSGLANLIPYVGPSIG 121

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
              + I  L   +        ++  I   +    L P +VGG +K+  +     L+    
Sbjct: 122 LIPMIISNLFT-DPHKMIIAVIYMLIIQQVDGNILYPRIVGGVMKVHPITILVLLLLSSN 180

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             G++G+ +     +++  I K      + +KE
Sbjct: 181 IYGVIGMIVAVPTYSILKEIAKFLARLYENHKE 213


>gi|148380520|ref|YP_001255061.1| hypothetical protein CBO2565 [Clostridium botulinum A str. ATCC
           3502]
 gi|153933161|ref|YP_001384807.1| hypothetical protein CLB_2506 [Clostridium botulinum A str. ATCC
           19397]
 gi|153936838|ref|YP_001388277.1| hypothetical protein CLC_2436 [Clostridium botulinum A str. Hall]
 gi|168180546|ref|ZP_02615210.1| putative membrane protein [Clostridium botulinum NCTC 2916]
 gi|148290004|emb|CAL84123.1| putative membrane protein [Clostridium botulinum A str. ATCC 3502]
 gi|152929205|gb|ABS34705.1| putative membrane protein [Clostridium botulinum A str. ATCC 19397]
 gi|152932752|gb|ABS38251.1| putative membrane protein [Clostridium botulinum A str. Hall]
 gi|182668572|gb|EDT80551.1| putative membrane protein [Clostridium botulinum NCTC 2916]
          Length = 342

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/319 (14%), Positives = 118/319 (36%), Gaps = 13/319 (4%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            ++   +    + +I +   PI++ F+ +K  +  F A++  V+++ +  V ++ +    
Sbjct: 31  IVRDILSLFFISFVIYYVLKPIHT-FLKQKGINEKFSALLLVVTLIMIIGVFIISIIPAI 89

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + E   + S V    +       ++  I   +               +    E +  + G
Sbjct: 90  IKEGYNITSSVGYIQK-------YIDYIYNKINLLNNNKILGGILNKVNGKIENYTVSIG 142

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + + +F    G   LDY +    + I +++F   G  I Q+   +         K +  
Sbjct: 143 ENILNKFVG-LGENILDYAV----IPIIVYYFLAAGDKIIQKFFIIFPVKIRGMVKNVLE 197

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K++    +   I+ +   ++        G+   + L +I     +IP   P+  +  
Sbjct: 198 DIDKILARYIISQIILCLIITILTFLVLIGLGIKLPILLSLINGFFNIIPYFGPVIGSLP 257

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +I +    +   A    +       I    L P + G  + +  L     L+ G +  G 
Sbjct: 258 AILIAFTKSPKTALWALILLYFIQQIEGDILSPKITGDSVDMHPLTVILLLLIGGKIYGF 317

Query: 326 LGLFIGPVLMALIAVIWKE 344
            G+ +   +  ++ +I+++
Sbjct: 318 AGMVLAIPIGVIMKIIYED 336


>gi|89071208|ref|ZP_01158394.1| Conserved hypothetical membrane/transport protein [Oceanicola
           granulosus HTCC2516]
 gi|89043250|gb|EAR49478.1| Conserved hypothetical membrane/transport protein [Oceanicola
           granulosus HTCC2516]
          Length = 376

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 98/283 (34%), Gaps = 14/283 (4%)

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVL-----ANQHGIPVPRWLSDIPGGMWASE 121
           TV      +V L       +      V ++V       N+  + +   L  +     ASE
Sbjct: 70  TVVSAVFLVVALGAGATGAIYAASGPVGRLVERAPEIGNELEVKMRGLLQSVDEVQKASE 129

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              +  S         +  ++                       S+   ++   FF   G
Sbjct: 130 QVEQLASGGDEEGEPQQVVVEQGA------LIGDLVGSMASAGTSLAVALVLAMFFLATG 183

Query: 182 FSISQQLDSLGEHLFPA-YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
               +++    + L        I R V + I      +T+I  G G+ +G A WL G+P+
Sbjct: 184 DMFQRRIIENAQRLSDKKRAMMIVRDVERQISRYLAAITVINAGLGVCIGVALWLIGLPN 243

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNI-FNATCLFLWGAIELFIVDKTLRP 298
               G+   ++  +P  GA +    V+I  ++  +    A    +       +    + P
Sbjct: 244 AHFWGIAAFLLNFLPFIGAMVGTAGVAIMAIVTFDTMGQALLCPIAYLALTALEGNVVTP 303

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L+G  + +  +  F  ++  V   G+ G F+   ++ ++ V+
Sbjct: 304 TLLGRHLAINTVSVFLTVMLWVWLWGIPGAFLAVPVLVIVKVL 346


>gi|329891165|ref|ZP_08269508.1| hypothetical protein BDIM_28760 [Brevundimonas diminuta ATCC 11568]
 gi|328846466|gb|EGF96030.1| hypothetical protein BDIM_28760 [Brevundimonas diminuta ATCC 11568]
          Length = 419

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/324 (12%), Positives = 92/324 (28%), Gaps = 19/324 (5%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           LY+L+    P+  A+ +      +  +   +      F    A + V+  F+  +  +  
Sbjct: 59  LYWLRDILTPLAMAVFLMIMIDGVKRAIERRTPIPPRFAGAAALIVVVLGFLASIWIIVD 118

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                  +              + R +S + G           +S P +L  +       
Sbjct: 119 GAAGFFTDASGVAGSIGPRIDQISRDVSALVG-----------ISDPPTLHDM---IAGI 164

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           +   ++   A +          +   MI   F          + +    E        ++
Sbjct: 165 DMRGWLTTTAFQVQGAATG---AFFVMIYLGFLLASQAGFRKKMVGMFPERGPRQEALEV 221

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
              V   +        +       V        G+ +      +  I+  IP        
Sbjct: 222 FERVRGGVEGYLWVQAVTGAMICAVAWGLMRAVGLQNAEFWTFVIFIVGFIPVLGGAVAG 281

Query: 264 --AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
                  L+   + + A  LF+     LF+V   ++P + G    +  +     L    +
Sbjct: 282 CAPPLFALVQFESYWPALILFVGLQTLLFLVGNLVQPRMQGDNQNIDPIVVLLALAFWGK 341

Query: 322 TMGLLGLFIGPVLMALIAVIWKES 345
             G+ G+F+   L  +   I  E 
Sbjct: 342 LWGVAGMFLSTPLAVMAMAILAEF 365


>gi|268589315|ref|ZP_06123536.1| permease, PerM family [Providencia rettgeri DSM 1131]
 gi|291315338|gb|EFE55791.1| permease, PerM family [Providencia rettgeri DSM 1131]
          Length = 354

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/347 (14%), Positives = 106/347 (30%), Gaps = 14/347 (4%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSS---FISKKEESSTFLAVIATVS 69
           + + +F +LVS + +  FF+ +L+ L+       +       + +   S +    I    
Sbjct: 17  QAIALFTLLVSGFVIIFFFSSILAPLLAAIALAYLLEWPTNLLQRIGLSRSVAVGIILTL 76

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              +  + +L +      +   L++ +            +   +P    A          
Sbjct: 77  FAGISAMVILIIAPTAWQQGINLMADLPNMVNR---FNEFAQKLPEQYPALVDVGIIDMM 133

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             +L+        +     +               + ++ + +  FF  +D   IS+   
Sbjct: 134 ADNLRSRMSGIADSVVKASVASLIG-----IFTLAVYLVLVPLMTFFLLKDKERISKSFL 188

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L          K+   + + I +   G     +  G+     +    +   V L V+  
Sbjct: 189 KLLPK-NRLLVGKVWVEMNEQITNYLRGKVTEMVIVGVATYLCFAYFDLRYSVLLSVLVG 247

Query: 250 IMAMIP-GGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           +  +IP  GA  +   V I  L   G       L L   +   +    + P L    + L
Sbjct: 248 VAVLIPYIGAVAATIPVVIVALFQFGIGSEFWYLMLVYLVIQGLDSNVVVPLLFSEAVNL 307

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             L     +V      G  G+F    L  LI  +         E++ 
Sbjct: 308 HPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHVWPEEPTESQN 354


>gi|330983017|gb|EGH81120.1| hypothetical protein PSYAP_31588 [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 242

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 78/191 (40%), Gaps = 3/191 (1%)

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            + +  +   A+   +  + +  +++ + +  F+  RD   ++ ++  L      A   K
Sbjct: 50  GDIVSIVLSQATASSLALIGWLTNLVLIPVVCFYLLRDWDIMTGKIRGLLPRQREAQIVK 109

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           ++    +V+ +   G  ++ +G G++  +   L G+   + +GVI  + A++P    +  
Sbjct: 110 LAGECHEVLGAFIRGQLLVMVGLGVIYAAGLMLVGLELGLLIGVIAGLAAIVPYMGFVIG 169

Query: 263 TA---VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                V+      G+++    +     I   +    L P LVG  I L  +   F ++ G
Sbjct: 170 IGSALVAGLFQFGGDLYPMMGIVAVFMIGQALEGMVLTPLLVGDRIGLHPVAVIFAILAG 229

Query: 320 VRTMGLLGLFI 330
               G  G+ +
Sbjct: 230 GELFGFTGILL 240


>gi|329939947|ref|ZP_08289229.1| putative membrane protein [Streptomyces griseoaurantiacus M045]
 gi|329300773|gb|EGG44669.1| putative membrane protein [Streptomyces griseoaurantiacus M045]
          Length = 415

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/358 (13%), Positives = 109/358 (30%), Gaps = 16/358 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF--LKGFFAPVLSALIIGFTSWPIYSSFISKKEES 58
           M   +     +   +I    L S  F  L G    +L A  +     P  S   S     
Sbjct: 37  MPRWLPRAMVLALALIAAFQLGSWAFHQLTGLLINILIAFFLALAIEPAVSWMASH-GLR 95

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                 +  + ++ L    +  L      ++ +++          I   +W +       
Sbjct: 96  RGLATFLVFLCLLLLTAGFVALLGSMLAGQIIKIIEGFPEYLDSLI---QWTNTTFHTEL 152

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                  +L H   L+     +++ +    +   A   G +F    +++       F+F 
Sbjct: 153 RRVDVQNNLVHSDWLRK----YVQNSATGVLDVSAQVLGGLFRLLTITLF-----SFYFA 203

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            DG  + + L S+      A   +   I             ++A+  G           +
Sbjct: 204 ADGPRLRRGLCSVLPPARQAEVLRAWEIAVDKTGGYLYSRGLMALISGAAHYVLLQALEI 263

Query: 239 PSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P    L V   +++  IP        A+ + +    + + A  +  +  +     +  L+
Sbjct: 264 PYAPVLAVWVGLVSQFIPTIGTYLAGALPMLIAFTVDPWYALWVLGFVVVYQQFENYMLQ 323

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           P L    + +     F  ++ G   +G +G  +    +A +  +    +       + 
Sbjct: 324 PKLTARSVDIHPAVAFGSVIAGTALLGAVGALVAIPAIATLQALLGAYVKRYDVTDDP 381


>gi|323464925|gb|ADX77078.1| conserved membrane protein, putative [Staphylococcus
           pseudintermedius ED99]
          Length = 365

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/297 (11%), Positives = 102/297 (34%), Gaps = 12/297 (4%)

Query: 48  YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
           +   + K+         I  +++  +    +  +      +++ L+ ++    +    + 
Sbjct: 57  FQKMLEKRHLPRWASITIILLALTAMMAAVIGVIGPVIATQIENLIHQIPFIQREAERLI 116

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
            +   +       +  T+ ++   S      + L +N ++ I    S            +
Sbjct: 117 NF--ALDQRDRLPDQVTEKINDIVSYFSQMASDLLSNSLNIISSIVST--------LFLL 166

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           I +   L +  +D       + ++       +   + + + + + S   G   +++  G 
Sbjct: 167 ILVPFFLIYMLKDHERFIPAVANIFNGERKIFIVNLLKDLNQTLMSYIQGQVTVSLILGA 226

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           +L   Y + G+   + L +   +  MIP  G  ++F    I L +  +      + +   
Sbjct: 227 ILYIGYSIIGLEYTMLLVMFAIVANMIPFLGPWMAFLPAGI-LGLIQSPTTFIWVCVITL 285

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           I   +    + P ++G  + +  L     ++      G   + +   L A++  I +
Sbjct: 286 IAQQLEGNVITPNVMGKSLNIHPLTIIIVILASGSLGGFTLILVAVPLYAVLKTIVR 342


>gi|322370485|ref|ZP_08045043.1| permease [Haladaptatus paucihalophilus DX253]
 gi|320549902|gb|EFW91558.1| permease [Haladaptatus paucihalophilus DX253]
          Length = 431

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 106/313 (33%), Gaps = 34/313 (10%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F    +  L + + + PIY     +          +   + +    +P++ L  Y +   
Sbjct: 34  FEGTFVLGLFMYYATRPIYDRLEHRLGH-----PGLTAAAALVTVALPVVLLVSYAVAVS 88

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
              V+++   +  G      L         +    + L   Q  +     F     +  +
Sbjct: 89  AVEVAEIAGESLQG--YEGVLRPYFDLSSLTVHPQRILELAQQSQGEFMRFGGPELLTTV 146

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI--V 207
               + FG   L   +++ F     F+  RD   + +        +        + +  V
Sbjct: 147 ANVVAAFGTGLLQLFVALAFA----FYLLRDDDKLVRW---FVSDIGGERSTAYTYVEAV 199

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV--------ITAIMAMIP-GGA 258
            + +++ + G  + A   GL     Y LA V +   L +        +T + +++P  G 
Sbjct: 200 DRSLQTVYFGNILNAFVVGLAAAVVYNLANVFAPSGLSIPLPTLLGLLTGVASLVPVVGT 259

Query: 259 PISFTAVSIYLLIKGN-------IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            + +  ++ YL+++          F    + L+  +   + +  +RP++ G   +L    
Sbjct: 260 KLVYVPIAAYLVVRSFDIGPRTLWFPVAFVALFVVVIDLVAEVIIRPYITGR--ELHVGL 317

Query: 312 TFFGLVGGVRTMG 324
             F  + G    G
Sbjct: 318 MLFAYIFGPLLFG 330


>gi|239998962|ref|ZP_04718886.1| Transporter, putative [Neisseria gonorrhoeae 35/02]
 gi|240112881|ref|ZP_04727371.1| Transporter, putative [Neisseria gonorrhoeae MS11]
 gi|240125733|ref|ZP_04738619.1| Transporter, putative [Neisseria gonorrhoeae SK-92-679]
 gi|254493752|ref|ZP_05106923.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268594809|ref|ZP_06128976.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268598966|ref|ZP_06133133.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268684330|ref|ZP_06151192.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|226512792|gb|EEH62137.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268548198|gb|EEZ43616.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268583097|gb|EEZ47773.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268624614|gb|EEZ57014.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
          Length = 356

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 58/331 (17%), Positives = 122/331 (36%), Gaps = 10/331 (3%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
              ++  +Y L     P   A ++ +   P+      K    ++    +   S++ L  +
Sbjct: 19  FAALVWLVYALGDTLTPFAVAAVLAYVLDPLVEWLQKKGLNRASASMSVMVFSLILLLAL 78

Query: 77  PLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            LL +    + +   L S++  L       +  WL +  GG      + +          
Sbjct: 79  -LLIIVPMLVGQFNNLASRLPQLIGFIQNTLLPWLKNTIGG------YVEIDQASIIAWF 131

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            + T   +N +        + G   +    +++   + L++F  D    S  +  L    
Sbjct: 132 QAHTGELSNALKAWFPVLMKQGGNIVSSIGNLLLPPLLLYYFLLDWQRWSCGIAKLVPRR 191

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +P
Sbjct: 192 FAGAYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLMLVGLDSGFAIGMVAGILVFVP 251

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGGPIKLPFLPTF 313
                +   ++    +         L +W    +  F+    + P +VG  I L      
Sbjct: 252 YLGAFTGLLLATVAALLQFGSWNGILAVWAVFAVGQFLESFFITPKIVGDRIGLSPFWVI 311

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           F L+     MG +G+  G  L A+  V+ +E
Sbjct: 312 FSLMAFGELMGFVGMLAGLPLAAVTLVLLRE 342


>gi|119511129|ref|ZP_01630247.1| hypothetical protein N9414_16956 [Nodularia spumigena CCY9414]
 gi|119464224|gb|EAW45143.1| hypothetical protein N9414_16956 [Nodularia spumigena CCY9414]
          Length = 350

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/344 (14%), Positives = 124/344 (36%), Gaps = 20/344 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESS 59
           E + N + I   +++ +    +  L  F       + A I+ F                 
Sbjct: 11  EKLNNTKLIRYVLLLALGWAIVQVLAYFSTVIVIFIFAGILAFLLSYPVKWSERFLPH-- 68

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
               ++  +  + + +  ++ L +  + + ++L+ +     ++ I +   L +I      
Sbjct: 69  GIAVIVVFLVSLLVLVGLIVTLGFAILSQFQQLLEQAPQFVEYVISLLNTLQNILIKFNF 128

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              +            L E  L+   +  I    + F    L   + +I + +  FF   
Sbjct: 129 KVDFQ-----------LIEEALRNQILAGIGTGWATF-QGLLINLVDLILIAVVAFFMLL 176

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  +   L             +++  + +     F G  ++++  G  +   +    +P
Sbjct: 177 DGKRVWDFLMKFFPR---NVRNQVTLAIQQNFLGFFWGRLLLSLFFGGSIFVVFIFIQLP 233

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             + L  I  +  +IPG        +   + +   I+ +  + +   I   + +  L P 
Sbjct: 234 YALFLAAIAGVFDLIPGIGATIGITLVALIALPQGIWVSVQVLIGSVILQQVEENLLMPR 293

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           ++ G I +  +  FF L+ G +  GL+G+F+   +  ++  ++K
Sbjct: 294 IMQGSINMNPVFMFFALLIGAKVAGLVGVFLSIPIAGVLISMFK 337


>gi|319891985|ref|YP_004148860.1| hypothetical protein SPSINT_0695 [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161681|gb|ADV05224.1| hypothetical protein SPSINT_0695 [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 365

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/297 (11%), Positives = 102/297 (34%), Gaps = 12/297 (4%)

Query: 48  YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
           +   + K+         I  +++  +    +  +      +++ L+ ++    +    + 
Sbjct: 57  FQKMLEKRHLPRWASITIILLALTAMMAAVIGVIGPVIATQIENLIHQIPFIQREAERLI 116

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
            +   +       +  T+ ++   S      + L +N ++ I    S            +
Sbjct: 117 NF--ALDQRDRLPDQVTEKINDIVSYFSQMASDLLSNSLNIISSIVST--------LFLL 166

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           I +   L +  +D       + ++       +   + + + + + S   G   +++  G 
Sbjct: 167 ILVPFFLIYMLKDHERFIPAVANIFNGERKIFIVNLLKDLNQTLMSYIQGQVTVSLILGA 226

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           +L   Y + G+   + L +   +  MIP  G  ++F    I L +  +      + +   
Sbjct: 227 ILYIGYSIIGLEYTMLLVMFAIVANMIPFLGPWMAFLPAGI-LGLIQSPTTFIWVCVITL 285

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           I   +    + P ++G  + +  L     ++      G   + +   L A++  I +
Sbjct: 286 IAQQLEGNVITPNVMGKSLNIHPLTIIIVILASGSLGGFTLILVAVPLYAVLKTIVR 342


>gi|168211406|ref|ZP_02637031.1| putative domain of unknown function [Clostridium perfringens B str.
           ATCC 3626]
 gi|170710661|gb|EDT22843.1| putative domain of unknown function [Clostridium perfringens B str.
           ATCC 3626]
          Length = 345

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/322 (16%), Positives = 116/322 (36%), Gaps = 19/322 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
            +     VL + I  +   P+Y     + + +  FLA+   +SV+ L +  L  L     
Sbjct: 34  FRDIIFIVLVSGIFAYILKPLYRFLCERTKINKNFLAMSIVLSVIFLILFFLTVLIPSMF 93

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E +     +            +++D+   M   EL          +  + E  +     
Sbjct: 94  KEGESFDGLINGIEF-------FINDLIMKMKFMEL---------GIFDVIEAQVTEKLN 137

Query: 147 DFIPRFASRFGMIFLDY---CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             +  FA+      + +    L+   + +  ++F   G  +S +          A  K +
Sbjct: 138 ILLVSFATSIINNLISFSENILAFAVIPVLAYYFLAYGDLLSNKFLYCCPIEKRALLKNL 197

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
            R V KV+    LG  ++++  G++      + G+   + L  + A++ +IP    +   
Sbjct: 198 GRDVDKVLGKYILGQLLLSLLVGVMTFIGMLILGIKFPLLLAFLNALLNIIPYFGAVLGA 257

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             +I + +         + L   I   I    + P +    I +  +     L+ G +  
Sbjct: 258 IPAIVVALVEGPNKILWVILTFLIIQQIEGNLIAPKITAESIDMHPILIIILLLIGEQIG 317

Query: 324 GLLGLFIGPVLMALIAVIWKES 345
           GLLG+     +  +I V++ + 
Sbjct: 318 GLLGMVFIVPIAVVIKVLFDDW 339


>gi|167756725|ref|ZP_02428852.1| hypothetical protein CLORAM_02266 [Clostridium ramosum DSM 1402]
 gi|237734444|ref|ZP_04564925.1| predicted protein [Mollicutes bacterium D7]
 gi|167702900|gb|EDS17479.1| hypothetical protein CLORAM_02266 [Clostridium ramosum DSM 1402]
 gi|229382264|gb|EEO32355.1| predicted protein [Coprobacillus sp. D7]
          Length = 360

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 55/334 (16%), Positives = 123/334 (36%), Gaps = 19/334 (5%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           +L +++ +     P +    I F   P+ +       + S     IA   V       L 
Sbjct: 43  VLSAIWLVS---KPFIVGFTIAFVLNPLINYIEKYVTKRS-----IAVTMVYLAAFAILT 94

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            L    +  + E +S++  A   G      L +I   +  +  +           I++  
Sbjct: 95  LLISLAVPMIYESISEMFPAFYSG------LGEIGVFVKENFNYDISSLMRHIQNIVNAF 148

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
           F  +  +D      ++  +   ++ + II  I      +++  S  + +    +   P Y
Sbjct: 149 FKDSVVLDTTIDVLNQVMINVTNFLIYIILAIYMS-SNFKNIRSHIRNITYRIDKTLPIY 207

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            ++I   + + +++ F+G    AI + +     Y   G P+ + LG ++   ++IP   P
Sbjct: 208 LREIDSSLVQYVKAFFIG----AIAQAITTMLMYLAIGHPNWLILGFVSGASSIIPYVGP 263

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           I    + +   +         LF+   I+  I+   + P +    I L  +   FG++ G
Sbjct: 264 IVANCLGLITSLGMGTTTIVILFILIFIQSTIMSYVITPRIYSSRIDLSIMWVLFGILSG 323

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               G+ G+ I   L+    + ++      +  K
Sbjct: 324 SSLFGIWGMVIAMPLLVSAKITFQVYKENHQNEK 357


>gi|258541540|ref|YP_003186973.1| transporter [Acetobacter pasteurianus IFO 3283-01]
 gi|256632618|dbj|BAH98593.1| transporter [Acetobacter pasteurianus IFO 3283-01]
 gi|256635675|dbj|BAI01644.1| transporter [Acetobacter pasteurianus IFO 3283-03]
 gi|256638730|dbj|BAI04692.1| transporter [Acetobacter pasteurianus IFO 3283-07]
 gi|256641784|dbj|BAI07739.1| transporter [Acetobacter pasteurianus IFO 3283-22]
 gi|256644839|dbj|BAI10787.1| transporter [Acetobacter pasteurianus IFO 3283-26]
 gi|256647894|dbj|BAI13835.1| transporter [Acetobacter pasteurianus IFO 3283-32]
 gi|256650947|dbj|BAI16881.1| transporter [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256653938|dbj|BAI19865.1| transporter [Acetobacter pasteurianus IFO 3283-12]
          Length = 402

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/287 (11%), Positives = 90/287 (31%)

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +SVM   +V +  L     +   EL+ ++   ++        L ++            H 
Sbjct: 115 LSVMLFVLVLVGALSLVVHVSGPELMVQLSHLHEALTSERDALHNMLNSNPLGHAVLDHF 174

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                  ++ +    T+         +           +++ +IIA  +F       +  
Sbjct: 175 PRFLGGNMVPDGHAGTDNGMDFAGSMTNVLTSTFGSVGTMVVIIIAGVYFALSPHLYANG 234

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  +    + +  + +       + +   G  +     G +  S   L G+P  + LG++
Sbjct: 235 ILRITPVAYRSTMRTVLLTTGHALTAWVAGQMLDMTVVGCLTWSGLSLLGMPLALPLGLV 294

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +   +P          ++ + +      A  +    A         + PF+    +++
Sbjct: 295 AGLANFVPYLGTFIGAVPALLIALSVGPREAMMVAGLYAAIQTFEGYVMSPFIQKRAVRM 354

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           P   T          +G+ G      + A++  +       +  N+E
Sbjct: 355 PPALTILSQTIFGAFLGMWGFIFASPITAVLLAVASRLSAPLPPNEE 401


>gi|299132268|ref|ZP_07025463.1| protein of unknown function UPF0118 [Afipia sp. 1NLS2]
 gi|298592405|gb|EFI52605.1| protein of unknown function UPF0118 [Afipia sp. 1NLS2]
          Length = 365

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 58/348 (16%), Positives = 116/348 (33%), Gaps = 31/348 (8%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +++  I+  LY  + FF PV++A+I+G    P      + +       A+I  ++    
Sbjct: 36  ALLILAIVAVLYVGRAFFLPVVTAVILGTMLSPAAKRLEAFRVPRPVSAALIVVLTWAAF 95

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            ++  L                        +PV  W   +P      +        P ++
Sbjct: 96  VLMIGLI----------------------SVPVMDWFGKLPELGPILKDKLHVFDRPLAI 133

Query: 134 KILSETFLKTNG-------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
               +  L           +  +         +   +   ++F  + + F          
Sbjct: 134 WHQLQAMLGAPATAEPSLQLPKVAWVQPTIEFLSPTFTEILLFFAVLVLFIASWPDLRRA 193

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            + +   H       +I   +   + S  L ++ I  G G+  G A  LA +P+   LG 
Sbjct: 194 LVMNFPNHDSRLRMLRILNAIETNLGSYLLTVSFINAGVGVATGIACALAQMPNPAGLGG 253

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF--LWGAIELFIVDKTLRPFLVGGP 304
           + A +  IP   PI   A+ + + I         L   L  A   F+    + P ++G  
Sbjct: 254 LAATLNFIPIIGPILMFAILLCVGIVAMPTLGGALIAPLAFAGIAFVEGHFVTPTIIGRR 313

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           + L  L  F  L       G +G F+   L+ +  ++ +  I    + 
Sbjct: 314 LSLNALAVFLALAFWTWLWGPMGAFLSSPLLIVGLIVKEHMIPERDQP 361


>gi|315126793|ref|YP_004068796.1| integral membrane transport protein [Pseudoalteromonas sp. SM9913]
 gi|315015307|gb|ADT68645.1| integral membrane transport protein [Pseudoalteromonas sp. SM9913]
          Length = 347

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 114/331 (34%), Gaps = 22/331 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M       + ++ +  + I+L  +        P + A  I     P+ + F   +     
Sbjct: 1   MASLTGVNKSLIIFAALVIVLAGIKAASAIVIPFILAAFIAIICSPLINFFARYRI--PK 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            +AV+  V ++    V L  L    + +  +              +P + + +       
Sbjct: 59  GIAVVLVVLIIMGLGVSLGGLVGQSVNDFSK-------------QLPEYKAQL----KEE 101

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +W   ++   ++ I  E  L       +   A+           ++  +I+ + F   +
Sbjct: 102 FVWLVDMASQYNILINKEQILSMFDPGKMVDVATNMLTGLGSVMANMFLIILTVVFMLFE 161

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  + +++    +   P    K        I S     T++++  G++ G   W+  V  
Sbjct: 162 GPILGKKIHLALDD--PDSKIKQIDRFLDSINSYLAIKTLVSLATGVIAGFYLWILDVDY 219

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            V  GV+  ++  IP  G+ I+     +  LI      A  +         ++   + P 
Sbjct: 220 FVLWGVLAFMLNYIPNIGSIIAAVPALLLALITQGPLVAGLVGAGYLTINTVMGNIVEPK 279

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            +G  + L  L  F  L+     +G +G+ +
Sbjct: 280 YMGKGLGLSTLVVFLSLIFWGWLLGSVGMLL 310


>gi|86606339|ref|YP_475102.1| hypothetical protein CYA_1683 [Synechococcus sp. JA-3-3Ab]
 gi|86554881|gb|ABC99839.1| putative membrane protein [Synechococcus sp. JA-3-3Ab]
          Length = 378

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/365 (13%), Positives = 129/365 (35%), Gaps = 22/365 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLY----FLKGFFAPVLSALIIGFTS-WPIYSSFISKK 55
           M       + ++ W+++ I                  +L+A ++ F   +P+    + + 
Sbjct: 1   MNRFSPLQRLLLTWILIVISGWLALQVGRLFGHLLTTILTAAVLAFLLNYPVQ--VLRRY 58

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
             S      +     + L  +  + +      ++ +L          G  +P W+  +  
Sbjct: 59  RVSRGLAVTLVFALSVVLLALVGIAVVPILAKQVVQL----------GARIPEWVDTLQS 108

Query: 116 GMWASELWTKHLSHPQSLKILSETFLK--TNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
            +    LW    +       L  T L       + I   +    +   +  + ++ +++ 
Sbjct: 109 WLDQISLWAAERNINLGQTELVNTLLNRLQASAEKIAGQSLDILLGTFNQVIDLVLVLVL 168

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
             +    G    Q L SL    +     +   +     ++  +   ++     L+L   +
Sbjct: 169 ALYMLLYGGQFWQGLLSLFPKPWGPRIGEALAL---SFQNFLISQLVLGFIMALMLVPIF 225

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
               VP  +  G++  ++ +IP          +  LL   +I+ +  + L   I   + D
Sbjct: 226 GFLRVPFGLLFGLLIGLLEVIPLVGGFIGIGAAAVLLAFQDIWLSLKVVLVSLIVQQVKD 285

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           + + P L+G  I L  +     L+ G +  G+LG+ +   L +++  +++ +  A    +
Sbjct: 286 RVIAPRLMGELIGLNPVWILIALLVGAQLGGILGVIVAIPLTSVVKSLYEIARSADLAAE 345

Query: 354 EKISS 358
           E + S
Sbjct: 346 EGLDS 350


>gi|56460570|ref|YP_155851.1| permease PerM [Idiomarina loihiensis L2TR]
 gi|56179580|gb|AAV82302.1| Permease PerM [Idiomarina loihiensis L2TR]
          Length = 359

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 52/328 (15%), Positives = 111/328 (33%), Gaps = 14/328 (4%)

Query: 31  FAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
            AP+L A+ + +   WP+    +     S     +I     + L IV LL L      + 
Sbjct: 39  IAPLLIAISLAYLLDWPVMR--LMGLGLSRLTATIITFSLFLALMIVTLLTLVPVIWQQS 96

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             L+ ++     +   +  WL  +P         ++     Q +K  + +  ++     +
Sbjct: 97  TTLIQEMPDMVTN---LQIWLHKLPEMFPTIVDDSQITEFTQEVKRRAVSLGESLLTVSL 153

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                      +   + +I + + +FF  +D   +      L          ++ + +  
Sbjct: 154 TSIV-----NVMAMLVYLIIVPLLIFFMLKDRDILIAHFSRLLPS-NRQLISQVGQEMNL 207

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIY 268
            I +   G  I  +   +V    + L G+     L ++  +  +IP  GA ++   V + 
Sbjct: 208 QIMNYIRGKAIEVVVVAIVTFVTFSLFGLRYSALLSIMVGLSVLIPYVGAAVATIPVVLV 267

Query: 269 LLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            L +     A        + +  +D   L P L    I L  +     ++      G  G
Sbjct: 268 ALFQFGPTAAFVWVTVAYLVIQALDGNLLVPLLFSEAISLNPVYIIGAVLIFGGIWGFWG 327

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKEK 355
           +F    L +L+  +         E  E+
Sbjct: 328 VFFAIPLASLVKAVLTAWDSGTGEKAEE 355


>gi|229096468|ref|ZP_04227440.1| UPF0118 membrane protein [Bacillus cereus Rock3-29]
 gi|229115392|ref|ZP_04244800.1| UPF0118 membrane protein [Bacillus cereus Rock1-3]
 gi|228668112|gb|EEL23546.1| UPF0118 membrane protein [Bacillus cereus Rock1-3]
 gi|228687030|gb|EEL40936.1| UPF0118 membrane protein [Bacillus cereus Rock3-29]
          Length = 339

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 57/341 (16%), Positives = 121/341 (35%), Gaps = 25/341 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +G  R++++ I+   LY LK     +L   I+ F           K + +   +    
Sbjct: 9   RSRGFQRFIVLIILAFVLYGLKSMINLILITFILTFLMDRFQRFISKKLKVNRKIVIACL 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++      L        +++ +L+ +  L  Q+           P      +     
Sbjct: 69  YIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQN-----------PPDNEIIKYALST 117

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           ++  +  K + +      G+D I +  +  G + L   LS+I  +  L     +   I  
Sbjct: 118 INGMEVSKYIEQ------GVDVIYQSIANIGKVSLQILLSLILSLFFL----LEKERIIT 167

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 E     ++++I+    +  RS         +IA+   ++   A  + G P  + 
Sbjct: 168 FTSKFKESKLKIFYEEIAYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLLV 227

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L V+  ++ +IP  G  IS   + I     G +     + ++  +   +    L P  + 
Sbjct: 228 LAVMIFLLGLIPVAGVIISLFPLCIIAYNVGGVMYVLYILVFITVIHALESYFLNPKFMS 287

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               LP   TF  L+     +G+ GL IG  +   +  +  
Sbjct: 288 AKTNLPVFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLD 328


>gi|255656255|ref|ZP_05401664.1| hypothetical protein CdifQCD-2_11304 [Clostridium difficile
           QCD-23m63]
 gi|296450306|ref|ZP_06892066.1| sporulation integral membrane protein YtvI [Clostridium difficile
           NAP08]
 gi|296878718|ref|ZP_06902722.1| sporulation integral membrane protein YtvI [Clostridium difficile
           NAP07]
 gi|296260867|gb|EFH07702.1| sporulation integral membrane protein YtvI [Clostridium difficile
           NAP08]
 gi|296430292|gb|EFH16135.1| sporulation integral membrane protein YtvI [Clostridium difficile
           NAP07]
          Length = 353

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 66/336 (19%), Positives = 116/336 (34%), Gaps = 5/336 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I  I+ + L FL     P + + II     PI     +    + T ++++  ++   L
Sbjct: 17  VLITSIVYIVLKFLLPLLMPFVISFIIASILRPIIKLITNNTNLNRTLISIVILLAFYGL 76

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL-WTKHLSHPQS 132
            I  L+         + ++  ++    +  I     L+ +   + AS       L     
Sbjct: 77  CIFLLISFGVKIFASVSDVFFRLPEIYKSSIQPT--LNTLFSKIDASTPNVNLALMLGWD 134

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
               S   L  +         +        + L +I  +IA FFF  D   I   +    
Sbjct: 135 NISQSMMSLVASISTNALNAIASIASKTPAFMLKLIITLIASFFFTFDYQKIVNFILKQF 194

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                     I       +        I+     + L     +  V +   + VI A++ 
Sbjct: 195 PEKSQFMIINIKNSSINALLKLLKAYAILLSVTFIELLIGLTILKVENAFTISVIIALVD 254

Query: 253 MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++P  G     T   I  LI GNI N     L   I + +V + L P +VG  I L  L 
Sbjct: 255 ILPVLGTGSILTPWMIISLINGNI-NLAIGLLILYIIITVVRQILEPKVVGHQIGLYPLI 313

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           T   +  G +  G+ GLF  P+   +I  +    I+
Sbjct: 314 TLMCMFVGAQLFGIAGLFGFPIAATIIKNLHDNGII 349


>gi|182415952|ref|YP_001821018.1| putative phytochrome sensor protein [Opitutus terrae PB90-1]
 gi|177843166|gb|ACB77418.1| putative phytochrome sensor protein [Opitutus terrae PB90-1]
          Length = 821

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/332 (14%), Positives = 109/332 (32%), Gaps = 30/332 (9%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P+  +L++ F   P+       +       A++ TV++    I     + +    +  
Sbjct: 85  MIPLALSLMLAFLLSPVVVRLRRWRL--PQPAAILLTVTLAFSVIG---VVAWQITNQAL 139

Query: 91  ELVSKVVLANQHG------IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            L+ ++    ++       +  P   S +   + + E     L  P      S       
Sbjct: 140 ALLQELPRYEENLRKKAADLKQPDASSAVTRAIVSLERTWAELQQPAP-DTHSSPATPPG 198

Query: 145 GIDFIP-------RFASRFGMIFLDYCL------SIIFMIIALFFFYRDGFSISQQLDSL 191
               +P         +   G   L   +       I+ + + +  F RD    S+ +  +
Sbjct: 199 APKPVPVEVKEGDATSLDIGRQVLSSLIKPLSTAGIVIVFVIVILFQRD-DLRSRFIRVI 257

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
           G        + +     +V R   L   ++    G+ +G   +  GVP     G+++ ++
Sbjct: 258 GGGQLNVATEAVDDAAQRVSR-YLLAQLMVNTFFGVAVGLGLFFIGVPHAALWGLLSTLL 316

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCL--FLWGAIELFIVDKTLRPFLVGGPIKLPF 309
             IP   PI      + L +  +   +  L       +   + +  +   + G    +  
Sbjct: 317 RFIPFLGPIIAVIFPLALSVAVDPGWSMLLWTAALYIVAELVTNNIIETLVYGSSTGISV 376

Query: 310 LPTFFGLVGGVRTMGLLGLFIG-PVLMALIAV 340
           L      V      G+ GLF+  P+ + L+ +
Sbjct: 377 LALLIAAVFWSWLWGMPGLFLSTPLTVCLLVI 408


>gi|170739370|ref|YP_001768025.1| hypothetical protein M446_1060 [Methylobacterium sp. 4-46]
 gi|168193644|gb|ACA15591.1| protein of unknown function UPF0118 [Methylobacterium sp. 4-46]
          Length = 645

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/327 (13%), Positives = 100/327 (30%), Gaps = 13/327 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEES--STFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
           F P++ A+++ F   P+ +     +     S   AV+  + V+      +          
Sbjct: 46  FIPLVLAILLSFVLAPVVNLLRRLRLGRVPSVIAAVLLALGVILAIGGVIGLQVADLAKN 105

Query: 89  M---KELVSKVVLANQHGI-----PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           +   +  V + V   Q G+      + R  +     + +              +      
Sbjct: 106 IPAYQSTVQRKVSTLQEGVLGRANDLIRRFNRQVSEVSSQAAAPDAAGAAAGAQAPRAVL 165

Query: 141 LKTNGIDFIP-RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
           +K    D  P   A +     +     +  +++ + F       +  +L  L        
Sbjct: 166 VKVQEPDTSPLVLAEKVLGPVVSPLTMVGIVLVVVIFILMQREDLRDRLIRLFGASDLHR 225

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
                      + + FL    +    G+++G   W  GVPS +  GV +A+M  +P    
Sbjct: 226 TTMAMDDAAGRLGTFFLAQLGMNAAFGVIVGVGLWFIGVPSPILWGVFSALMRFVPYIGA 285

Query: 260 IS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
           +      V++   +      A        +   +  + + P L G    L         +
Sbjct: 286 LISGVFPVALAAAVDPGWSMALWTAALFLVAEPVFGQVVEPLLYGHSTGLSPFSVIVSTL 345

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKE 344
                 G +GL +       + V+ + 
Sbjct: 346 FWGFLWGPIGLILATPFTVCLVVLGRH 372


>gi|309780744|ref|ZP_07675485.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA]
 gi|308920426|gb|EFP66082.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA]
          Length = 350

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/346 (13%), Positives = 121/346 (34%), Gaps = 14/346 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +  + ++ +Y +       + A+   +  +P+      +    +     I  V ++ +
Sbjct: 15  VFLFALAVLIIYKIASVLLVTVFAVFFSYLLYPLIEQLERRMPRQAPRSVSIGVVFILVV 74

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +  ++       + ++E   ++       +        +    +   L  + L   +  
Sbjct: 75  LV--VIVAGSVFGVTVQEEAGRLADQLPKLLDTSTMADRLALPNFLEPLRARILEFLREQ 132

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI---IALFFFYRDGFSISQQLDS 190
                    +   D         G+  +    ++++++   I  F    +  SI   L S
Sbjct: 133 L--------STTSDQAMPLVRNIGLGVMHAASNLVYLVLIPIMSFLMINEAPSIHAALLS 184

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                    W  I   +  ++      + ++++   L    A++L GVP  + L    A+
Sbjct: 185 WIRSSDKRLWGNIIDDLDTLLSRYVRALLLLSLATLLFYSIAFYLLGVPYALLLATTAAV 244

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +  IP   P++     + + +     +   L  +  +     D  L P+L+   +K+  L
Sbjct: 245 LEFIPFAGPLAAVVAIVTVAVFSGYPHLFWLIGFIVVYRLFQDYVLNPYLMSEGVKVSPL 304

Query: 311 PTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKEK 355
               GL+ G +  G+ G+F+  PV+ AL  V+ +         + +
Sbjct: 305 LVIVGLLAGEQLGGVAGIFLSVPVIAALKIVLSRAWAAQSLGREAR 350


>gi|229916029|ref|YP_002884675.1| hypothetical protein EAT1b_0297 [Exiguobacterium sp. AT1b]
 gi|229467458|gb|ACQ69230.1| protein of unknown function UPF0118 [Exiguobacterium sp. AT1b]
          Length = 366

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/320 (14%), Positives = 116/320 (36%), Gaps = 12/320 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P++  + I      + S    +         +I  ++ + +  + ++ LF      + 
Sbjct: 42  LTPIIMGIAIALLLNTVLSYIEERFHLKRYQGLLIVYITFIGILAISVVTLFPRIYSSLS 101

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L+        + +PV     D+  G   + L   + +  Q++         +  ++   
Sbjct: 102 SLI--------NELPVYIRQIDVFLGEVNNYLKDYNATIAQAIDFARFEDRYSGWVETAV 153

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK----ISRI 206
             +  +   F    ++ +  I+   +  +D    ++    L   L P    K    I + 
Sbjct: 154 LSSVSYVSSFTMTLINFLIGIVISIYLLKDKEVFARMFKRLLYALLPVGTAKTTIDIFQE 213

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           +  + +   +G ++  +  G++      + G P  + LGVI  ++  IP   P+     +
Sbjct: 214 MDYIFKRYIIGKSLDCLIIGVLAVIGLLIIGAPYALLLGVIVGVLNFIPYVGPLLGMIPA 273

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
             +    + F A  + L+  +        L P ++G  + +        ++ G    GL+
Sbjct: 274 FIITYFYDPFTAVLVLLFIFLLQQFDGLWLGPKILGDSVGITPFWVITSIIIGGSLFGLI 333

Query: 327 GLFIGPVLMALIAVIWKESI 346
           G+F+   + A+I V+    I
Sbjct: 334 GMFVSVPITAMIQVVLSRLI 353


>gi|166368038|ref|YP_001660311.1| hypothetical protein MAE_52970 [Microcystis aeruginosa NIES-843]
 gi|166090411|dbj|BAG05119.1| hypothetical protein MAE_52970 [Microcystis aeruginosa NIES-843]
          Length = 365

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 57/337 (16%), Positives = 129/337 (38%), Gaps = 17/337 (5%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           ++     +L+   +  ++A ++ F    +    + ++  + +    I  +  + + IV  
Sbjct: 27  LLFQLFSYLEPLVSIFVTASLLAFVLD-VPIKLLQRRGVNRSGSIAIVFLIALLILIVLG 85

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           L L    + ++  L++ +          P+W+      +   E W K   +   ++    
Sbjct: 86  LILIPQIVEQLSSLINSL----------PQWIESGTEQIQNLEKWDKTQKYAIYIEQSIT 135

Query: 139 TFLK--TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
              +  TN +  +      F +  ++  L+I+F+++   F    G  I + + S      
Sbjct: 136 QLSERLTNVLQTLSTQLLSFVLGTINSILNILFVLVLTVFLVLYGEQIWEGIFSWIP--- 192

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
             +  K+  I+ +   + F G TI+A    L     + +  V   +  GV   +  +IP 
Sbjct: 193 APWNLKLRTIIRQTFETYFAGQTILAGILSLAQIFVFVILKVDYALLFGVAIGLTTLIPF 252

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
            +  +   +S  LL+  + +    +     I   I D  + P L+GG I L  +     L
Sbjct: 253 ASAFAIIGIS-TLLMFQDFWLGLKVLTLTIIVGQINDNVIAPRLMGGMIGLNPVWIILSL 311

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             G +  G+LGL I   + +++           +E +
Sbjct: 312 FIGGKVAGILGLLIAVPIASVLKSTIDIIRSQQREKE 348


>gi|87121490|ref|ZP_01077379.1| putative membrane protein [Marinomonas sp. MED121]
 gi|86163333|gb|EAQ64609.1| putative membrane protein [Marinomonas sp. MED121]
          Length = 358

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 114/331 (34%), Gaps = 22/331 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M E+      ++ +  + II+  L        P + ++ I     P+ +     K     
Sbjct: 1   MAESHRATYFLVGFAALIIIIAGLKAASAIVVPFMLSMFIAIIFAPLLAWLARHKV--PI 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            +AV+  V +M   +  L+      + +                 +P + + +   +   
Sbjct: 59  GIAVMLVVLLMIFSVGSLVIFVGSSLDDFYAA-------------LPGYKARLSNELVGI 105

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                H+    S++ +   F  +  +  +    S  G +  +  + ++ +I  LF    +
Sbjct: 106 TDLLHHMGLSVSVEKIRSYFDPSILMQVVTNALSSLGGVLTNVFVVLMTVIFILF----E 161

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                 +L +  +    +  +         +       T+++I  G V+G   W+ GV  
Sbjct: 162 AADFPTKLSAAMDDATGSLKRFKD--FSNAVNQYLAIKTLVSILTGFVIGIWLWIIGVDF 219

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPF 299
            +  GV   ++  +P    I     ++ L        A+ L   G + +  IV   + P 
Sbjct: 220 PLLWGVSAFLLNFVPNIGSIIAAIPAVMLAFVQLGGVASGLAALGYLAINLIVGNIIEPR 279

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            +G  + L  L  F  L+      G +G+ +
Sbjct: 280 YMGKGLGLSTLVVFLSLILWGWVFGAVGMLL 310


>gi|72005299|ref|XP_783596.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115960849|ref|XP_001193862.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 837

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 73/187 (39%), Gaps = 6/187 (3%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYR--DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRST 214
           G   L++ +S +  +  LF+     D   +  +  S       +   K  + V   IR  
Sbjct: 617 GTAILNFIISFVVFMTTLFYLLSFSDKQYLPMKWISSLTPGNDSTSSKYGQAVENSIRGV 676

Query: 215 FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKG 273
           F     ++   GL     + + G+        + A+   IP  G   +     I LL+ G
Sbjct: 677 FGASIKMSTFYGLYTWLTHTIFGLQIVYVPSALAALFGAIPFVGTYWAAVPGVIELLVHG 736

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
               A  LF+   + +++VD  +   + GG        T   + GG+   GL G  IGP+
Sbjct: 737 EKVLAVMLFVVQMLPMYVVDTAIYSDIKGGG---HPYLTGLAVAGGIYCYGLEGAIIGPI 793

Query: 334 LMALIAV 340
           L+ ++ V
Sbjct: 794 LLCVLLV 800


>gi|229492836|ref|ZP_04386634.1| hypothetical protein RHOER0001_4143 [Rhodococcus erythropolis
           SK121]
 gi|229320276|gb|EEN86099.1| hypothetical protein RHOER0001_4143 [Rhodococcus erythropolis
           SK121]
          Length = 382

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/318 (16%), Positives = 110/318 (34%), Gaps = 21/318 (6%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
              G   PV  AL++     PI      +      ++ ++ ++  + L ++ L       
Sbjct: 49  VFGGILGPVFLALVLTIAVQPIQDWSQRRGW--PKWVGMLGSLVTVYLILLGLAASLIVS 106

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++  ++ +      + +   R                  L+         ++ L +  
Sbjct: 107 TAQLATILPQYSEEMTNLLNEGR----------------DKLADFGVSTEQIQSTLSSVD 150

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +           L     ++F++  L F   DG SI  +L  L E      +     
Sbjct: 151 LTKVVGVLESGLEGLLGILSDLVFILALLLFMAFDGMSIRSRLHVLSEQRPEISYA--LS 208

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTA 264
                 R   +  T+  +   ++ G A WL G+   V   +++ I   IP  G  I    
Sbjct: 209 TFAAGTRKYLVVSTVFGLIVAVLDGGALWLMGIQLPVLWALLSFITNYIPNIGFVIGVIP 268

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            ++  L++G  +    + +  ++  F++   ++P  VG  + L    TF  LV     +G
Sbjct: 269 PALLGLLQGGPWLMLWVIVVYSVINFVIQSIIQPKFVGDAVGLSVTMTFLSLVFWSWVLG 328

Query: 325 LLGLFIGPVLMALIAVIW 342
            LG  +   L  L+  + 
Sbjct: 329 ALGALLAIPLSLLVKAVL 346


>gi|119511687|ref|ZP_01630792.1| hypothetical protein N9414_06044 [Nodularia spumigena CCY9414]
 gi|119463672|gb|EAW44604.1| hypothetical protein N9414_06044 [Nodularia spumigena CCY9414]
          Length = 365

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 56/327 (17%), Positives = 120/327 (36%), Gaps = 21/327 (6%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           W+I   +      +  F    L A I+ +   P+   F  K   +  +   +  +S + +
Sbjct: 26  WLIFLFLKSFQELVTIFILATLLAFILNY---PV--KFFEKAGVNRNYAVALVLISALVI 80

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           F V  + L    + +  E+V  +          P+W+            W        + 
Sbjct: 81  FAVFGIVLLPIILPQFNEMVKLL----------PQWIDASGEKFQLLNNWAISHGLNINF 130

Query: 134 KILSETFLK--TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
             +   F +   N ++ I        +  +D    I+  ++  F+   D   I   +   
Sbjct: 131 SEIISDFTERLPNELENITDNLFSIFIETVDSVSDILITVVLTFYILLDSPRIWSGI--- 187

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
            + L  ++  K+ R + +  ++  +G   +A   G +L   + +  V   +  G+   I 
Sbjct: 188 FKKLPWSFTDKVQRSLQQNFQNYLIGQVTLASLMGCLLTVIFLVFQVQFGLIFGLGVGIF 247

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++IP G  +S + +++ +  +        L +    + F +D+ + P L+G    L  + 
Sbjct: 248 SLIPFGDVVSISLITLIIAAQNFWLAVKVLAVAVVTDQF-IDQAIAPRLLGKFTGLRPIW 306

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALI 338
               L+ G    GLLGL I   +   I
Sbjct: 307 VLVALLLGTSIGGLLGLLIAVPIAGFI 333


>gi|290994094|ref|XP_002679667.1| predicted protein [Naegleria gruberi]
 gi|284093285|gb|EFC46923.1| predicted protein [Naegleria gruberi]
          Length = 531

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 75/199 (37%), Gaps = 6/199 (3%)

Query: 158 MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG 217
             F D+  S    I+ +F+F ++       +  +   L       +   +   I  T   
Sbjct: 297 SNFKDFVFSSFIFILFVFYFVQNDEFFIDSMKRISP-LTEEESTILIDSIDTNIIKTLYY 355

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSIYLLI-KGNI 275
           +   AI   +V   ++++ G       G ++A +++IP  +  I +   +I++L   G I
Sbjct: 356 LCTFAICNFIVTTLSFYIVGFEIIFIFGFLSAFLSVIPIISNWIIWIPATIFVLSRDGII 415

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
            +   +     I L+++D  +                   ++ GV      G+  GP+ +
Sbjct: 416 SSNWIIIFASHISLYVIDNIIYTNFFKKQ---HPTMLGVSILLGVYVFNHSGIIKGPLFI 472

Query: 336 ALIAVIWKESIMAIKENKE 354
            L    +  +   I ++K+
Sbjct: 473 TLGMTFFDIATKYINKDKK 491


>gi|184155466|ref|YP_001843806.1| putative transport protein [Lactobacillus fermentum IFO 3956]
 gi|183226810|dbj|BAG27326.1| putative transport protein [Lactobacillus fermentum IFO 3956]
          Length = 366

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 54/331 (16%), Positives = 118/331 (35%), Gaps = 15/331 (4%)

Query: 32  APVLSALIIGFTSWPIYSSFISK-----KEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
            P+L   +I +    +   +        K + +   A +  + +  L IV ++ +    +
Sbjct: 41  MPLLIGCVIAYIVNLLMVRYEGLYHRVFKGQRAQRFARVTALCLAYLSIVVVIGVVSSVV 100

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
                   K++ + Q  + +P++++ +    +   LW +      +   +    L     
Sbjct: 101 APQLVACVKLLFSGQSKV-IPQFINWLENESFLKSLWQQIDLSKINWTKVQSYLLNGASG 159

Query: 147 DF--IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            F  +   AS+         ++I F I  L F       +++Q   L     P    +I 
Sbjct: 160 SFSTVMSTASKVVSALTTTVVAIFFSIYLLLFK----DRLARQFKLLLTTYLPGQVARIL 215

Query: 205 RI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           R+     +   S  +G    A+  G        +  +P    +G + A+ A++P    + 
Sbjct: 216 RVLTVFDQSFSSYIVGQVKDAVVLGCSCTVLMLILQLPYAPMVGAVMAVTALVPIIGALM 275

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
             +V I ++   +   A    +         ++   P +VG  I LP +  F  ++ G  
Sbjct: 276 GASVGIIVIFAVSPVKALIFLVMILALQEFDNRVTYPLIVGKSIGLPSVWVFVAVMVGGG 335

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             G+LG+     L A    + K  +   + N
Sbjct: 336 VSGILGMMFTVPLFAAFYQLLKTDVAKRQLN 366


>gi|226949920|ref|YP_002805011.1| hypothetical protein CLM_2872 [Clostridium botulinum A2 str. Kyoto]
 gi|226841709|gb|ACO84375.1| putative membrane protein [Clostridium botulinum A2 str. Kyoto]
          Length = 342

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 117/319 (36%), Gaps = 13/319 (4%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            ++   +    + +I +   PI++ F+ +K  +  F A++  V+++ +    ++ +    
Sbjct: 31  IVRDILSLFFISFVIYYVLKPIHT-FLKQKGINEKFSALLLVVTLIMIIGAFIISIIPAI 89

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + E   + S V    +       ++  I   +               +    E +  + G
Sbjct: 90  IKEGYNITSSVGYIQK-------YIDYIYNKINLLNNNKILGGILNKVNGKIENYTVSIG 142

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + + +F    G   LDY +    + I +++F   G  I Q+   +         K +  
Sbjct: 143 ENILNKFVG-LGENILDYAV----IPIIVYYFLAAGDKIIQKFFIIFPVKIRGMVKNVFE 197

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K++    +   I+ +   ++        G+   + L +I     +IP   P+  +  
Sbjct: 198 DIDKILARYIISQIILCLIITILTFLVLIGLGIKLPILLSLINGFFNIIPYFGPVIGSLP 257

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +I +    +   A    +       I    L P + G  + +  L     L+ G +  G 
Sbjct: 258 AILIAFTKSPKTALWALILLYFIQQIEGDILSPKITGDSVDMHPLTVILLLLIGGKIYGF 317

Query: 326 LGLFIGPVLMALIAVIWKE 344
            G+ +   +  ++ +I+++
Sbjct: 318 AGMVLAIPIGVIMKIIYED 336


>gi|330722169|gb|EGH00069.1| Putative transport protein [gamma proteobacterium IMCC2047]
          Length = 357

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/315 (15%), Positives = 107/315 (33%), Gaps = 27/315 (8%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L ++ I     P  +    +       LA++  V+ + +F V +  +    + +  
Sbjct: 33  LVPFLLSIFIAVICGPPLAWMTKR--GVPLILAMLVVVAFIVVFGVAVGAIVSTSINDFS 90

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           +              +P +   +         W   +     +  + E       +  + 
Sbjct: 91  Q-------------DLPVYQEKLSTITATFLAWLGGMGFDLPINQIQENIKPGTVMGMVG 137

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK--KISRIVP 208
           +  +  G +  +  L ++ +I  L        S S    S  E       K  +      
Sbjct: 138 KALASLGNVMTNAFLILLTVIFIL--------SESAMFHSKLERAAGEGSKSLQAIERFT 189

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
             I       T +++  G+++    W+ GV   V  G++  ++  +P  G+ I+     +
Sbjct: 190 SSINQYMAIKTGLSLLTGVLIMCWLWIIGVDYPVLWGLVAFLLNFVPNLGSIIAAVPAVL 249

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
             LI+    +A    +       +V   L P ++G  + L  L  F  LV     +G +G
Sbjct: 250 LALIQLGTGDALLTAVVYVFANVLVGNVLEPRMMGKGLDLSTLVVFLSLVFWGWVLGPVG 309

Query: 328 LFIG-PVLMALIAVI 341
           + +  P+ M +   +
Sbjct: 310 MLLSVPLTMTVKIAL 324


>gi|86748515|ref|YP_485011.1| hypothetical protein RPB_1390 [Rhodopseudomonas palustris HaA2]
 gi|86571543|gb|ABD06100.1| Protein of unknown function UPF0118 [Rhodopseudomonas palustris
           HaA2]
          Length = 368

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 60/330 (18%), Positives = 120/330 (36%), Gaps = 16/330 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +++ +++  LY  K FF P+++A ++G    P  +     +   +        V  + +
Sbjct: 36  ALLIIVVIGLLYVAKPFFLPIVTAFVVGTMLSPAATYLERWRIPRA--------VCAVLI 87

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             + L  + +   L    L+       + G+ +   LS          LW +  S     
Sbjct: 88  VALALAGVGFMVALISVPLIDWTSRLPELGVILRDKLS---FFERPMGLWRQLQSALGGT 144

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           +       +   ID++ +    F    L   L  +  ++     ++D       + + G 
Sbjct: 145 EPAVPAPSQMPQIDWM-QPTLEFLSPTLTEFLLFLVTLVLFIASWKDLRR--ALVMNFGG 201

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   +I   + + +    L +TII +  G   G    LAG+P+   LG + A +  
Sbjct: 202 RDARLRTLRILNEIEQSLGGYLLTVTIINLCYGAATGVLCALAGMPNPAGLGALAATLNF 261

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLF--LWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           IP   PI    +   + I         L   L  A+  F+    + P ++G  ++L  L 
Sbjct: 262 IPVIGPIVMFVILTLVGIISMPTMGEGLLAPLGFAVLTFVEGHFITPTIIGRRLELNALA 321

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            F  L       G +G F+   L+ +  V+
Sbjct: 322 VFIALAFWTWLWGPMGGFLASPLLIVGLVL 351


>gi|154150909|ref|YP_001404527.1| hypothetical protein Mboo_1366 [Candidatus Methanoregula boonei
           6A8]
 gi|153999461|gb|ABS55884.1| protein of unknown function UPF0118 [Methanoregula boonei 6A8]
          Length = 348

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/335 (15%), Positives = 126/335 (37%), Gaps = 20/335 (5%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
                   V+ +  +     P++   +      +   A   T+++  L      +     
Sbjct: 24  IFWPVLDMVVLSASLAVVLMPVHHRLMRSVP--AVVSAAALTIALFTLVAA-AAYCTDLV 80

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + +   L++++                   G W +   T+  +   S+   +  F    G
Sbjct: 81  LRQNAGLINQIFGTI---------------GTWLANPATQPGAFGVSISKDTLLFWVAKG 125

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
                 + +      L      +   ++ F F   G ++  ++         +Y + ++ 
Sbjct: 126 NALFVNYWATITANILLIVFKGLVFFLSFFLFLLRGIALRDRIFRHLPVQVRSYCELLTP 185

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTA 264
           +    +   ++    IA    ++    ++L G  + +    + A   +IP  G+ ++F  
Sbjct: 186 VTVDTLYVIYIVQFAIAALTFVISLPVFYLLGYGNILFYSFLAAFCELIPILGSSVAFII 245

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
           V  Y L  G++     + + G I +  + +  +RP LVG  +K+  +  F GL+GG+ T+
Sbjct: 246 VGAYSLALGDLRGLLIMVILGYIVVSALPEIYIRPVLVGRRVKINPVIMFVGLIGGLLTL 305

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           GL G  +GP+++ L+   ++      K +KE   +
Sbjct: 306 GLAGFVLGPLIIVLVMKSYRIWTDERKGSKEPQDA 340


>gi|149925951|ref|ZP_01914214.1| hypothetical protein LMED105_02845 [Limnobacter sp. MED105]
 gi|149825239|gb|EDM84450.1| hypothetical protein LMED105_02845 [Limnobacter sp. MED105]
          Length = 385

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/332 (15%), Positives = 109/332 (32%), Gaps = 12/332 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L    AP ++A ++ +           K         +   V  +  F   LL     G+
Sbjct: 53  LWPVLAPFVAAFVLAYLLAAPSRWVHGKLRGR-----IPLPVCAVLTFFALLLIFSSVGL 107

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
           L +  +++++ L   +   +   +                      +K     ++  N  
Sbjct: 108 LFIPVVLTQLELIQSNLPQLIVNVKRTVLPWLNEAFGLTISVDSTEMKDRIAAYISENRG 167

Query: 147 DFI---PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
                  +         L     +   +IA  F       I++Q   +         + +
Sbjct: 168 TLAELSTKILRSGSQSVLGITGFVSLTVIATLFILPGWTQITKQFQQVFPPHLWKRAQPL 227

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
              +  V+     GM I+ +           + G+ S  ALG++  ++ ++P        
Sbjct: 228 FSEIDSVMTEYIKGMMIVMLFLSTFYSIGLSVVGLQSGWALGMLAGVLCVVPYLGFAVAL 287

Query: 264 AVSIY---LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            V +    L ++G +     L ++  +  F+    L P +VG  I L  L   F L    
Sbjct: 288 LVGLLTAALELQGFLPIFLVLLVF-VVGQFLEGFVLTPLVVGDKIGLSALAVIFALAFFG 346

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              GL+G+F+   L A+  V +  +    +++
Sbjct: 347 AVFGLVGVFLALPLAAIFKVAYLHAFAHYEQS 378


>gi|46190495|ref|ZP_00206488.1| COG0628: Predicted permease [Bifidobacterium longum DJO10A]
 gi|189440703|ref|YP_001955784.1| permease [Bifidobacterium longum DJO10A]
 gi|189429138|gb|ACD99286.1| Hypothetical permease [Bifidobacterium longum DJO10A]
          Length = 563

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 70/212 (33%), Gaps = 2/212 (0%)

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           ++T+ +      A         + L+++ +++  ++    G  + +             +
Sbjct: 175 IQTSWVTDFAGTAMSTVGGLFSFLLNLMTVVMTTYYISAAGPKLRRSFCQWLAPNTQRRF 234

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA-MIP-GGA 258
             +  +    I S     +I+A+           +  VP  + L +   +++  IP  G 
Sbjct: 235 LLVWTVAQGQISSFLFSRSILALINATCTAIFLEILHVPYWLPLALFCGVVSQFIPTVGT 294

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            I      ++         A  + ++  +   I +  L P +    + +     F  ++ 
Sbjct: 295 YIGGALPVLFAWGNRGWTYAVAVLVFIIVYQQIENLILSPRISQRTMDINAAVAFLSVLA 354

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
                G  G F+   + A +  I++      +
Sbjct: 355 FGSLFGAFGAFLALPVTASLQAIFRAYTRRYE 386


>gi|261405457|ref|YP_003241698.1| hypothetical protein GYMC10_1608 [Paenibacillus sp. Y412MC10]
 gi|261281920|gb|ACX63891.1| protein of unknown function UPF0118 [Paenibacillus sp. Y412MC10]
          Length = 387

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/316 (16%), Positives = 101/316 (31%), Gaps = 10/316 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           ++IM I           F   L  LII       +S F+ ++     F A I+ +  + +
Sbjct: 23  YLIMLIFSKLYQIAAPVFLSFLVFLIIE-----PFSKFLHRRGLPKPFAAAISVLLFLLV 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +  L       + +   L   +    Q       +   +       +     L+   + 
Sbjct: 78  ILGILFGAGALIVSQFMNLQDNLPAYTQTI--QKHFSETLMFLQTKLDALPPDLTDRLNG 135

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                T       +   R+   F   F  +  +    II  FF   +  S  +       
Sbjct: 136 YFQDITTFAQGAAESFFRYIVGFMGSFSSFIANFGVAIILAFFLSTEIGSWRRIAKDKTP 195

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                 +  +   V K I S       +     +++     + G  + +++ +I A+  +
Sbjct: 196 KTLKTAFVFLKDNVFKAIGSYIKAQMKLVSITFVIVYIGLLILGTGNSLSVALICAVFDV 255

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +P  G P+       YL I GN   A  L +  A+ + I  + L P + G  I +     
Sbjct: 256 LPLLGVPVILIPWITYLFIVGNTGLAIGLIVLLAVVV-ISRQLLEPKITGNSIGVSSAFL 314

Query: 313 FFGL-VGGVRTMGLLG 327
                +  +   G+ G
Sbjct: 315 MLSFMMISLSIFGVAG 330


>gi|40225713|gb|AAH14248.2| C9orf5 protein [Homo sapiens]
          Length = 340

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 9/190 (4%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDG---FSISQQLDSLGEHLFPAYWKKIS-RIVPKVIR 212
           G   L++ LS+I  +  LF+        +   + + SL     P     I  + V + IR
Sbjct: 110 GTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIR 169

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI 271
             F     +A   GL     + + G+        + AI+  +P  G   +     + L +
Sbjct: 170 GVFDASLKMAGFYGLYTWLTHTMFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWL 229

Query: 272 KGNIF-NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +   A  L ++  +  + VD  +   + GG        T   + GG   +GL G  I
Sbjct: 230 TQGLGCKAILLLIFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAII 286

Query: 331 GPVLMALIAV 340
           GP+L+ ++ V
Sbjct: 287 GPILLCILVV 296


>gi|146276452|ref|YP_001166611.1| hypothetical protein Rsph17025_0400 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145554693|gb|ABP69306.1| protein of unknown function UPF0118 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 357

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 108/314 (34%), Gaps = 14/314 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P +    I +   P+          S      + +V ++ + ++ +L +      ++ 
Sbjct: 30  ILPFIVGGAIAYFLDPVADRLERA-GLSRVAATSLISVGMLLVVVLLVLAVIPTLASQLT 88

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L+       +                   +L  +  +  Q+L  + +T  +  G   + 
Sbjct: 89  ALIDAAPTIFRQL--------HTFLLEHFPQLSDETSTMRQTLLSIGDTIKQRGGE--LA 138

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     ++  + ++ + +  F+   D   +  ++DS          ++++  + +V
Sbjct: 139 NTVLISAYGVINALIFVVVVPVVSFYLLLDWDPMVAKIDSWLPRDHAPTLRRLASEIDEV 198

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           +     G   + +  G     A    G+   + +G I   +  IP    +   A++I L 
Sbjct: 199 LAGFVRGQISVCLVLGTFYAVALAAVGLQFGLVVGAIAGAITFIPYVGALIGGALAIGLA 258

Query: 271 IK---GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +    G+      +    A+  F+    + P LVGG + L  L   F L       G +G
Sbjct: 259 LFQFWGDWLAIGLVAGIFALGQFLEGNVITPRLVGGSVGLHPLWLLFALSAFGSIFGFVG 318

Query: 328 LFIGPVLMALIAVI 341
           + +   + A I V+
Sbjct: 319 MLVAVPVAAAIGVL 332


>gi|69246510|ref|ZP_00603973.1| Protein of unknown function UPF0118 [Enterococcus faecium DO]
 gi|257878313|ref|ZP_05657966.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257889486|ref|ZP_05669139.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257892572|ref|ZP_05672225.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|260559863|ref|ZP_05832042.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|314938633|ref|ZP_07845913.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
 gi|314944077|ref|ZP_07850740.1| conserved hypothetical protein [Enterococcus faecium TX0133C]
 gi|314950315|ref|ZP_07853596.1| conserved hypothetical protein [Enterococcus faecium TX0082]
 gi|314951087|ref|ZP_07854149.1| conserved hypothetical protein [Enterococcus faecium TX0133A]
 gi|314992327|ref|ZP_07857761.1| conserved hypothetical protein [Enterococcus faecium TX0133B]
 gi|314996889|ref|ZP_07861893.1| conserved hypothetical protein [Enterococcus faecium TX0133a01]
 gi|68195240|gb|EAN09694.1| Protein of unknown function UPF0118 [Enterococcus faecium DO]
 gi|257812541|gb|EEV41299.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257825846|gb|EEV52472.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257828951|gb|EEV55558.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|260074087|gb|EEW62410.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|313588996|gb|EFR67841.1| conserved hypothetical protein [Enterococcus faecium TX0133a01]
 gi|313593143|gb|EFR71988.1| conserved hypothetical protein [Enterococcus faecium TX0133B]
 gi|313596721|gb|EFR75566.1| conserved hypothetical protein [Enterococcus faecium TX0133A]
 gi|313597304|gb|EFR76149.1| conserved hypothetical protein [Enterococcus faecium TX0133C]
 gi|313642021|gb|EFS06601.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
 gi|313643332|gb|EFS07912.1| conserved hypothetical protein [Enterococcus faecium TX0082]
          Length = 359

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 119/356 (33%), Gaps = 23/356 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  L  + I R  ++  ++  L+ ++     +L   I  +    +           +  L
Sbjct: 19  QRFLANEKIRRLTVLLFVVFVLFLVRSMITTILLTFIFTYLMIHLVQIIQRFVRIPTGVL 78

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A++    ++ L  +         + +  +++  V+   +H           P   +    
Sbjct: 79  AIMIYTLIVYLIYLAFTKYIPMLIHQTFDMIQSVIDFYEHQPKDAD-----PVLQYIHTY 133

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             ++    Q            NG      +    G + + + +S I      FFF  +  
Sbjct: 134 IERNDFFEQL----------QNGASIALGYLQDIGKMAVAFAMSFILS----FFFMIEKK 179

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVP 239
                     +  F  +++ I     K + +         +IA+   L+   A  + G  
Sbjct: 180 KTIVFSRLFLKSEFSWFFQDIYYFADKFVNTFGLVLEAQFVIALLNTLLTTIALAVFGFH 239

Query: 240 SHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             ++L ++  I+++IP    I     +S     +G I +   + +   I   I    L P
Sbjct: 240 QLLSLAIMIFILSLIPVAGVIISCIPLSFIAYSQGGIRDVVYILITILIVHLIESYVLNP 299

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            L+    +LP   TF  L+   R  G+ GL +G  +      + K   +     KE
Sbjct: 300 KLMSSKTELPIFYTFVVLLVSERFFGVWGLIVGIPIFTFFLDVLKVKKIPNHLPKE 355


>gi|303238498|ref|ZP_07325032.1| protein of unknown function UPF0118 [Acetivibrio cellulolyticus
           CD2]
 gi|302593896|gb|EFL63610.1| protein of unknown function UPF0118 [Acetivibrio cellulolyticus
           CD2]
          Length = 375

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 76/206 (36%)

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                      + + L++ F I  LF      +   + +++            + R   +
Sbjct: 169 VSLVGTIFGKIMSFILALFFSIYILFSKEDLKYKFEKLINTFMRADRRKKLYNVLRTANE 228

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
              S  +G    A+  G++      + G P    +G +  + A+IP        A+   L
Sbjct: 229 SFSSYIVGQCKEAVIIGVLCTLGMVIFGFPYATVIGPVIGMTALIPMVGAYIGAAIGFLL 288

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           ++  +   A    L+  I   +    + P +VG  + LP +  F  +  G   +G+ G+ 
Sbjct: 289 IVTDDPIKALLFILFIVILQQVEGNLIYPKVVGESVGLPGIWVFAAITVGGGLLGISGIL 348

Query: 330 IGPVLMALIAVIWKESIMAIKENKEK 355
            G  + A I  +  +S+   ++ + +
Sbjct: 349 FGVPIFATIYKLVSQSVNERQKARRE 374


>gi|296532431|ref|ZP_06895157.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
 gi|296267241|gb|EFH13140.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
          Length = 342

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 89/262 (33%), Gaps = 12/262 (4%)

Query: 109 WLSDIPGGMWASELWTKHLSHPQSLKILSETF--------LKTNGIDFIPRFASRFGMI- 159
           WL+  P     + LW +       L      +            G   +P+      M+ 
Sbjct: 75  WLAAAPIAEQLNTLWQEVPRAAAGLADRLSDYQWGQELLRRLNAGEMSLPQGGGSTAMVA 134

Query: 160 ---FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
                    +++ +     +F  D     + +++L           + R     +R    
Sbjct: 135 VNTTFGALANVVLVGFLGLYFALDPALYRRGIEALLAPSLRPRAHALCRESAATLRGWLG 194

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIF 276
              +  +  G++ G+  WL G P    LG+I A++  IP   P+     ++ L +   + 
Sbjct: 195 AQLVSMLVVGVLTGTGLWLIGTPLAPVLGMIAALLTFIPTLGPVLAAVPAVLLGLADGVS 254

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            A  +     +   I    + P++    + LP   T   LV      G LG+ +   + A
Sbjct: 255 GALSVVAVYLVVQTIESYFITPYVQKRSVDLPEAATIIALVAFGLLFGFLGMLLATPMAA 314

Query: 337 LIAVIWKESIMAIKENKEKISS 358
           L+ ++ +   +    ++E    
Sbjct: 315 LLLMLVRRLYVEDYLDQEPPEE 336


>gi|148243672|ref|YP_001219912.1| hypothetical protein Acry_3145 [Acidiphilium cryptum JF-5]
 gi|148243720|ref|YP_001219960.1| hypothetical protein Acry_3196 [Acidiphilium cryptum JF-5]
 gi|146400235|gb|ABQ28770.1| protein of unknown function UPF0118 [Acidiphilium cryptum JF-5]
 gi|146400283|gb|ABQ28818.1| protein of unknown function UPF0118 [Acidiphilium cryptum JF-5]
          Length = 660

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/360 (13%), Positives = 112/360 (31%), Gaps = 25/360 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +  G+M  + + + + +L   +    P+  A+++ F   P+ +  + +         
Sbjct: 16  AINDTSGLMTLISVVVAVATLSIARDVLIPITLAVLLSFLLAPLVN-LLRRTGLGRVPGV 74

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR----WLSDIPGGMWA 119
           V+A +  + + +     +         ++        Q    V       LS   G M +
Sbjct: 75  VLAVLLALGVILGTAGLIGTQVADLADDIPRYTDTIQQKVDAVQSATFGRLSAFVGSMGS 134

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDF-----------------IPRFASRFGMIFLD 162
                 H S        +     +                      + + A R     L 
Sbjct: 135 QINRDSHASAGAPASAGTTVSAASAAAPTNAAAKPIPVEVHQPEPSLMKLARRVLTPILS 194

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
             ++   +++   F       +  +L  +                   +   FL +  + 
Sbjct: 195 PLMTTAIVVVVAIFILLRPEDLRDRLIRMLGTGDLHRTMTAMDEAGHRLSRYFLTLLALN 254

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF 282
              G ++G   ++ GVPS V  G++  +M  IP   P    A+ + L    +   +  L+
Sbjct: 255 TAFGSMIGLGLFVIGVPSAVLWGIMAILMRFIPYIGPWLAAALPLALAAAVDPGWSMLLW 314

Query: 283 LWGAIEL--FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIA 339
                 +   ++ + + P   G    L  L      +      G +GL +  P+ + L+ 
Sbjct: 315 TGTLFVVSEGVMGQVIEPMAYGHSTGLSPLSVVVAAIFWSWLWGPVGLILSMPLTLCLVI 374


>gi|227529755|ref|ZP_03959804.1| permease [Lactobacillus vaginalis ATCC 49540]
 gi|227350239|gb|EEJ40530.1| permease [Lactobacillus vaginalis ATCC 49540]
          Length = 351

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/354 (14%), Positives = 121/354 (34%), Gaps = 24/354 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            + R++++ +I+  L+ L+     +L   I+ F              +      +   ++
Sbjct: 13  KLRRFVVLALIIFILWLLRPMMNLILFTFILTFIVVSWVRWLQRHVPK------ISIKLT 66

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+  +I  ++ +++     +  LV++V+      I        I            ++S 
Sbjct: 67  VVVTYIALIVAIYFGVTRYLPVLVNQVIKMVNSVIKFYSSRQAI----EIMHYVNHYISW 122

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              +  +       +G+       +  G + + + LS I      FF+  +   ++    
Sbjct: 123 GTIMSQM------KHGVTLAVSTLTSIGTMTITFLLSFILS----FFYTLELKQMNAFSR 172

Query: 190 SLGEHLFPAYWKKIS---RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           +  +  F  ++  I    +               IAI   ++         +P   AL +
Sbjct: 173 TFLDSDFGWFFSDIDYFGKKFVNTFGVVLEAQFFIAICNTVITSICLAFMHMPQIFALAL 232

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +  I +++P  G  IS   +S+     G I +   + +   +   +    L P  +    
Sbjct: 233 MVFIFSLVPVAGVIISLIPLSMVAYSVGGIRDVIYIIIMICVIHALEAYVLNPKFMASKT 292

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +LP   TF  L+      G  GL +G  +   +  I     +  K +  ++   
Sbjct: 293 ELPIFYTFIVLLVAEHFFGTWGLIVGVPIFTFLLDILGVKSIKKKPHSLRVHHQ 346


>gi|189500521|ref|YP_001959991.1| hypothetical protein Cphamn1_1589 [Chlorobium phaeobacteroides BS1]
 gi|189495962|gb|ACE04510.1| protein of unknown function UPF0118 [Chlorobium phaeobacteroides
           BS1]
          Length = 355

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/342 (14%), Positives = 122/342 (35%), Gaps = 15/342 (4%)

Query: 20  ILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           IL  ++    L G  AP + A ++ +   P+ +  +  +       A++ T   +    +
Sbjct: 11  ILFGIWIFSELSGLLAPFIIAFVLAYLFEPLMNFLLKNQIPR-VLSALLITFFGVGGITL 69

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            ++ L      ++      + +   +   V  W+       W S       S+  +L   
Sbjct: 70  VIVLLLPEIASQISAFAGIIPMIPGYLQNVINWVFSFEVFSWFSIDIESITSNINALFKK 129

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               + +   +F            +    +++ +    F+F  D    S  + +L     
Sbjct: 130 QFEDIGSLATNFTQTILKSI-PKVISAITTVLLLPFLTFWFLNDFDKFSGAIRTLLNKRP 188

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
            +   K   +  ++      G+ I+   E ++  + + + G+   + LG+I+     +P 
Sbjct: 189 DSPVHKYILMAREIFNQYVRGLIIVMTIEMVLYSTTFSIIGLNYPLLLGMISGAALWLPY 248

Query: 257 GAPISFTAVSIYLLIKGN------IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
               +   ++  ++  G+       +         A+E+      + P +VGG + L  +
Sbjct: 249 IGISTAILLTSLVIALGSNPAEQFFWVGLTYLSIQALEIL----FMVPKIVGGKVHLNPI 304

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             F  ++      G+ G+F+   + A I  + +E + +  E 
Sbjct: 305 ILFLSIILFGYFFGIPGIFVSIPVSAFIVAVIREKLYSSTET 346


>gi|154502815|ref|ZP_02039875.1| hypothetical protein RUMGNA_00629 [Ruminococcus gnavus ATCC 29149]
 gi|153796698|gb|EDN79118.1| hypothetical protein RUMGNA_00629 [Ruminococcus gnavus ATCC 29149]
          Length = 450

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/344 (13%), Positives = 117/344 (34%), Gaps = 24/344 (6%)

Query: 31  FAPVLSALIIGFTSWPI-------YSSFISKKEESSTFLAVIAT-VSVMCLFIVPLLFLF 82
             P++  L+I +   PI       +  +I +K         I+    ++   +V    + 
Sbjct: 74  LKPIIYGLVIAYLLNPIVKLVDTHFEPWIKRKFPRIKNAGGISRGAGILLAIVVMFALIV 133

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG------GMWASELWTKHLSHPQSLKIL 136
               + + EL   +       + VP  L+   G          S +     +  +     
Sbjct: 134 ALCNMMIPELYRSIRDMI---LTVPSQLNRFIGKMTEVMSTDQSTIGQMAEAVLKEASDA 190

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDY-------CLSIIFMIIALFFFYRDGFSISQQLD 189
            +T+++T+ ++ +    S   +  ++         + +I  +  LF   +      + + 
Sbjct: 191 LQTWMRTDLLNQVNVLMSNLTVGVINVVKELCYVLIGVIVSVYVLFSKEKFASQCKKLVY 250

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           ++           ++    ++     +G  I +   G++      +  +P  + + VI  
Sbjct: 251 AIMRPSRANMVLHLTIKSNEIFGGFIIGKIIDSAIIGVLCFVGLSILDMPYTMLVSVIVG 310

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +IP   P      S  L++  +        ++  +   +    + P ++G    L  
Sbjct: 311 VTNVIPFFGPYIGAIPSAVLILLSDPKMGIYFIIFVFLLQQLDGNIIGPKILGDSTGLSA 370

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               F ++ G    G +G+ +G    A+I  I K  +    EN 
Sbjct: 371 FWVVFSILFGGGMFGFVGMILGVPTFAVIYYIVKMLVNHQLENH 414


>gi|218282483|ref|ZP_03488742.1| hypothetical protein EUBIFOR_01324 [Eubacterium biforme DSM 3989]
 gi|218216579|gb|EEC90117.1| hypothetical protein EUBIFOR_01324 [Eubacterium biforme DSM 3989]
          Length = 385

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/308 (9%), Positives = 93/308 (30%), Gaps = 13/308 (4%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKK-----EESSTFLAVIATVSVMCLFIVPLLFLF 82
             F      A +    S  +    I        +       V++ + V  +F+  +  + 
Sbjct: 42  LPFLLGAGLAFVFNIISNNLMRYSIKWFDIKDTKIKRIISNVLSVLIVFAVFVAFVGIVI 101

Query: 83  ----YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
               +   L +      +       + + + +  I   +   ++         ++     
Sbjct: 102 PRILFSIQLLLTNFPQMIYELYIWLLDITKNIDVIHDSLKNLDINAFSTFAIDNVSKKIS 161

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
           ++L + G + I             +       I+  F    +   + ++  SL +   P 
Sbjct: 162 SWLVSGGANDIFGSIFTILSTTFSWFAQAFITIVFSFLLLFNKEQVVRETKSLLKAYLPE 221

Query: 199 ----YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 + + +++ ++  S   G  +  +    ++ +   +  +P    +G++  I A++
Sbjct: 222 KNYDRVRHVLKLIVRIFTSYVGGTCLECLILASLVTAGALILKIPYAFLVGLVVGIGALV 281

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    +    +  + +   +        +       +    + P +VG  +  P +    
Sbjct: 282 PMFGALVAAILCAFFIAMTSPVQGLTFIIMFICIQQVEGNFIYPHVVGKSVGFPPMYIIV 341

Query: 315 GLVGGVRT 322
            +  G   
Sbjct: 342 AITIGANV 349


>gi|17229969|ref|NP_486517.1| hypothetical protein all2477 [Nostoc sp. PCC 7120]
 gi|17131569|dbj|BAB74176.1| all2477 [Nostoc sp. PCC 7120]
          Length = 387

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/340 (14%), Positives = 124/340 (36%), Gaps = 15/340 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           I     +       ++ A ++ F   +P+  S+++ +      +A++  +  + + +   
Sbjct: 36  ISAIFDYFHSLIVILVGASVLAFLLNYPV--SWMAHRGARREQVAILVFLLALSILLALG 93

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + LF   + + ++LV+++      G      L++        +  T  L       ++  
Sbjct: 94  VTLFPLALTQAQQLVARIPELIDSGRSQLMMLNE--------KAETVGLPINLDALVVQI 145

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                  +  I        ++     L  +  ++  F+  + G  + Q L       F A
Sbjct: 146 NDRVKGQLQAIAGQVLNLAVVTFTSLLDFLLTMVLTFYLLQHGGELWQSLVEWLPSKFRA 205

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
            + +  R+     ++ F+   I++      L  A+    VP  +  G+   IMA++P G 
Sbjct: 206 PFSQTVRL---SFQNFFITQLILSTCMASALIPAFLWLKVPFGLLFGLTIGIMALVPFGG 262

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
                A++  L+   +      + +   I   I++  + P ++G    L  +     ++ 
Sbjct: 263 S-VGIALTTSLVALQDFSMGVRVLIAAVIVQQILENLIAPRILGNFTGLNPVWILISVLT 321

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           G R  GLLG+ +      +I         +   N  +++ 
Sbjct: 322 GARVGGLLGVIVAVPTAVIIKTALTALRPSSVNNAIEVTD 361


>gi|325661882|ref|ZP_08150503.1| hypothetical protein HMPREF0490_01241 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471860|gb|EGC75077.1| hypothetical protein HMPREF0490_01241 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 463

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/395 (12%), Positives = 127/395 (32%), Gaps = 40/395 (10%)

Query: 2   RETMLNPQGIMRWMIMFIILVS-----LYFLK------------GFFAPVLSALIIGFTS 44
           R T    Q + R M  F+++ +       FL+                P++   ++ +  
Sbjct: 29  RTTSKLQQHLNRGMTAFLVVAASIVFYFAFLRFGHISGVLGKIFQILKPIIYGFVLAYLL 88

Query: 45  WPIY----SSFISKKEES-------STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
            P+     +  +   +           F   +   + +      ++ L    + E+   +
Sbjct: 89  NPLMKMVENFIVKLLKGKIKKEERLKKFARGVGIFTALLFAGALIVALCNMILPELYRSI 148

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH-PQSLKILSETFLKTNGIDFIPRF 152
             +V      +    W+  +    +          +         E +++++ +  I  +
Sbjct: 149 RNMVYTVPEQL--NEWMERLSEMEFDDSTLALITKNVLTETTAFFENWIRSDLLRQINIW 206

Query: 153 ASRFGMI-------FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            S             ++  + II  +  LF          + + ++ +         I+R
Sbjct: 207 ISGLTEGVISVVNELMNIVIGIIVSVYVLFSKETFAGQSRKVVYAVLKPEKANLVLHITR 266

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTA 264
              K+     +G  I +   G++      +  +P  + + VI  +  +IP  G  I    
Sbjct: 267 KSNKIFGGFIIGKIIDSAIIGVLCFIGLSILDMPYTLLVSVIVGVTNVIPFFGPYIGAIP 326

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            +I LL+  +        ++      +    + P ++G    L      F ++ G    G
Sbjct: 327 SAILLLLT-DPIKGLYFLVFIIFLQQLDGNIIGPKILGDSTGLSAFWVVFSILLGGGLFG 385

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             G+ +G    A+I  +++  I    E K   + +
Sbjct: 386 FAGMIMGVPTFAVIYYLFQMFINQNLEKKHLPTDS 420


>gi|255101183|ref|ZP_05330160.1| hypothetical protein CdifQCD-6_10269 [Clostridium difficile
           QCD-63q42]
 gi|255307057|ref|ZP_05351228.1| hypothetical protein CdifA_10742 [Clostridium difficile ATCC 43255]
          Length = 361

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/318 (11%), Positives = 108/318 (33%), Gaps = 4/318 (1%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           FF+P L A+++     P+   F  K +        ++ + +  +    +  L       +
Sbjct: 42  FFSPFLLAILLALLLNPLVMLFEVKFKAHRLLAIFLSYIFIGFILAFAIRLLIPSIANTL 101

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             L++++ +   +         ++    +   L         +L   +  F+     +F+
Sbjct: 102 NRLINEMPMYTDYIDSFIE--KNMSNIDFLKTLIPHIQHSLDNLLKEASNFVGKIPKNFL 159

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
             +      +  +  +  I  I  ++   +      + L S           +  R    
Sbjct: 160 I-YTLSISSMLFNMTMGFILSIYIIYDKEKIALGFKRFLYSSTARNKADNIIEFFRTTHD 218

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAY-WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           +     LG  + ++  G++    + ++  + + + L  I  +  +IP   P       I 
Sbjct: 219 IFYDYLLGRILDSLIIGIIAFLGFQFVIRIENALFLASIIFLGNIIPYFGPFIGAIPPIA 278

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           + I  +      +  +  I   +    + P ++G  + +  +     ++ G    G +G+
Sbjct: 279 MTILYSPQKTIWVIAFLFILQQLDGNFIEPKVMGNQVGIGAIWVISAILVGQSLFGFIGV 338

Query: 329 FIGPVLMALIAVIWKESI 346
           F+   + A++     + I
Sbjct: 339 FLSVPIAAVVKTYVDKYI 356


>gi|255650553|ref|ZP_05397455.1| hypothetical protein CdifQCD_10251 [Clostridium difficile
           QCD-37x79]
          Length = 346

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/318 (11%), Positives = 108/318 (33%), Gaps = 4/318 (1%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           FF+P L A+++     P+   F  K +        ++ + +  +    +  L       +
Sbjct: 27  FFSPFLLAILLALLLNPLVMLFEVKFKAHRLLAIFLSYIFIGFILAFAIRLLIPSIANTL 86

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             L++++ +   +         ++    +   L         +L   +  F+     +F+
Sbjct: 87  NRLINEMPMYTDYIDSFIE--KNMSNIDFLKTLIPHIQHSLDNLLKEASNFVGKIPKNFL 144

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
             +      +  +  +  I  I  ++   +      + L S           +  R    
Sbjct: 145 I-YTLSISSMLFNMTMGFILSIYIIYDKEKIALGFKRFLYSSTARNKADNIIEFFRTTHD 203

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAY-WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           +     LG  + ++  G++    + ++  + + + L  I  +  +IP   P       I 
Sbjct: 204 IFYDYLLGRILDSLIIGIIAFLGFQFVIRIENALFLASIIFLGNIIPYFGPFIGAIPPIA 263

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           + I  +      +  +  I   +    + P ++G  + +  +     ++ G    G +G+
Sbjct: 264 MTILYSPQKTIWVIAFLFILQQLDGNFIEPKVMGNQVGIGAIWVISAILVGQSLFGFIGV 323

Query: 329 FIGPVLMALIAVIWKESI 346
           F+   + A++     + I
Sbjct: 324 FLSVPIAAVVKTYVDKYI 341


>gi|153953946|ref|YP_001394711.1| permease [Clostridium kluyveri DSM 555]
 gi|146346827|gb|EDK33363.1| Predicted permease [Clostridium kluyveri DSM 555]
          Length = 341

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 109/319 (34%), Gaps = 13/319 (4%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L+     +L + +I +T  PI    +  K  S    A I    V    I     L    
Sbjct: 30  VLREIIYLILISFLISYTLKPI-QKIMVNKGISEKISAFILIALVGLFIISIFAILIPSL 88

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             E   L + +         +   L  I G      L    +++         T + T  
Sbjct: 89  FKESLSLNNAIYSIQNLVDNIYGKLKLIQGNRTIHVL----INNFNRKIDGEVTVMFTRI 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            D + +             L ++ + +  ++F  +G  I++++ S          K IS 
Sbjct: 145 FDSLMKMGQNI--------LYVVVIPVITYYFLSEGECINEKVLSTFPIKSRGIIKNISC 196

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              K++    +   +++   G+V      +  V   + L V+ A   +IP   PI     
Sbjct: 197 HADKILGRYIISQLMLSGFIGIVTFFILLILKVDFPIILSVLNAFFNIIPYFGPIFGAIP 256

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +I + +  +   A    +   +   I    L P +    I +  L     L+ G    G 
Sbjct: 257 AIAIALIESPEKAIWTAICLYVLQQIEGNILSPKVTADSISMHPLVVILLLIIGGEIAGF 316

Query: 326 LGLFIGPVLMALIAVIWKE 344
           +G+ +   L  +I V++++
Sbjct: 317 IGMVLAVPLGVIIKVMYED 335


>gi|283769056|ref|ZP_06341962.1| putative membrane protein [Bulleidia extructa W1219]
 gi|283104413|gb|EFC05790.1| putative membrane protein [Bulleidia extructa W1219]
          Length = 365

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 76/207 (36%), Gaps = 1/207 (0%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +           +   ++ IF  +   F      SI + + +  E + P    +++  + 
Sbjct: 158 VTSELPSVLNSTISMAITFIFSFVISVFMSFQWDSIKETVSNWSEKMSPK-GSEVTFAIA 216

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
             +++    + I+ + + +     Y L G P    L ++T +  ++P   P++   ++I 
Sbjct: 217 DEVQTYIHSLFILMVIKVIEYALVYSLLGHPDWFILCILTGLALLVPYIGPMAVYGLAIL 276

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
             +   I     L +   I   + D  + P +      +  L   F ++ G    G++G+
Sbjct: 277 TAVGMPIGRFGFLVVILLILSNVDDYVISPLVHARNTSITPLWVLFSIMVGNTLFGIIGV 336

Query: 329 FIGPVLMALIAVIWKESIMAIKENKEK 355
            I   +   I    K       ++ E+
Sbjct: 337 IIAIPVYLAIHKFLKLRKYRKDDSYEQ 363


>gi|299822402|ref|ZP_07054288.1| membrane protein [Listeria grayi DSM 20601]
 gi|299815931|gb|EFI83169.1| membrane protein [Listeria grayi DSM 20601]
          Length = 350

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/354 (15%), Positives = 109/354 (30%), Gaps = 23/354 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           + + + +   R +   +++  LY L+     +L   I  F +  +    +   +     +
Sbjct: 5   QKLFHNKSFQRVLTFILLIGILYLLRSELNLILLTFIFAFIATRLERLILRWVKIPRKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP--VPRWLSDIPGGMWAS 120
            VI  + V       +  +    + ++ ELV   V    H        WL D        
Sbjct: 65  VVILYILVTLGIYAGITHVLPVLIKQISELVDLGVKLYHHPPQNGFTDWLLDTTKNSHIQ 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
               +                   G D I      FG + + + L++I  +       R 
Sbjct: 125 SYLRQ-------------------GADLIMDSLKSFGALGMSFFLALILSLFFSLEKERV 165

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
               + Q  +              +              +IA+   L+   A +L   P 
Sbjct: 166 -AKFTAQFQTSKLSFLYDNLAYFGKKFVSTFGVVLEAQLVIAVINTLITSLALFLMDFPQ 224

Query: 241 HVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            ++L ++  +  +IP    I     +++     G + +   L +   +   I    L P 
Sbjct: 225 MLSLVIMVFLFGLIPVAGVIISCIPLTVIAYTIGGVEDVIYLLITIVVVHCIETYFLNPR 284

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L+     LP   TF  L+      G+ GL IG  +   +  I        K+  
Sbjct: 285 LMASKTSLPIFYTFIVLIFSESYFGVWGLIIGIPVFVFLLDILDVRNEEQKQKH 338


>gi|221213106|ref|ZP_03586082.1| integral membrane transport protein [Burkholderia multivorans CGD1]
 gi|221167319|gb|EED99789.1| integral membrane transport protein [Burkholderia multivorans CGD1]
          Length = 618

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 65/193 (33%), Gaps = 5/193 (2%)

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
           + A  F    +    +I  +I+   F       + ++L  L                 + 
Sbjct: 155 QLAQGFLSPVVSPLATIGIVIVTAIFILLQRADLRERLIRLAGSHDMHRTTTAMSDAARR 214

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
           +   FL    + +  G VL     + G+P  +  GVI  +M  +P  G  I+    +I L
Sbjct: 215 LSRYFLAQLCVNVCVGAVLSLGLAVIGLPGALLFGVIAGLMRFVPYVGVWIAALPATI-L 273

Query: 270 LIKGNIFNATCLFLWGAIELF--IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
               +   +  + +     +      + L P + G    L  +      +      G +G
Sbjct: 274 AAAMSPGWSMIVTILVLFSVTEVAAGQFLEPLVYGHSTGLSPIAVIVAAIFWSWLWGAVG 333

Query: 328 LFIG-PVLMALIA 339
           L +  P+ + L+ 
Sbjct: 334 LVLSTPLTLCLVI 346


>gi|257880906|ref|ZP_05660559.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257816564|gb|EEV43892.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
          Length = 359

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 54/356 (15%), Positives = 119/356 (33%), Gaps = 23/356 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  L  + I R  ++  ++  L+ ++     +L   I  +    +           +  L
Sbjct: 19  QRFLANEKIRRLTVLLFVVFVLFLVRSMITTILLTFIFTYLMIHLVQIIQRFVRIPTGVL 78

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A++    ++ L  +         + +  +++  V+   +H           P   +    
Sbjct: 79  AIMIYTLIVYLIYLAFTKYIPMLIHQTFDMIQSVINFYEHQPKDAD-----PVLQYIHTY 133

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             ++    Q            NG      +    G + + + +S I      FFF  +  
Sbjct: 134 IERNDFFEQL----------QNGASIALGYLQDIGKMAVAFAMSFILS----FFFMIEKK 179

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVP 239
                     +  F  +++ I     K + +         ++A+   L+   A  + G  
Sbjct: 180 KTIVFSRLFLKSEFSWFFQDIYYFADKFVNTFGLVLEAQFVVALLNTLLTTIALAVFGFH 239

Query: 240 SHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             ++L ++  I+++IP    I     +S     +G I +   + +   I   I    L P
Sbjct: 240 QLLSLAIMIFILSLIPVAGVIISCIPLSFIAYSQGGIRDVVYILITILIVHLIESYVLNP 299

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            L+    +LP   TF  L+   R  G+ GL +G  +      + K   +     KE
Sbjct: 300 KLMSSKTELPIFYTFVVLLVSERFFGVWGLIVGIPIFTFFLDVLKVKKIPNHLPKE 355


>gi|119503091|ref|ZP_01625176.1| succinyl-diaminopimelate desuccinylase [marine gamma
           proteobacterium HTCC2080]
 gi|119461437|gb|EAW42527.1| succinyl-diaminopimelate desuccinylase [marine gamma
           proteobacterium HTCC2080]
          Length = 354

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 62/353 (17%), Positives = 118/353 (33%), Gaps = 12/353 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
              +   + ++  +I+   L+ L  +   F P+  A+++ +    + +    K   S+  
Sbjct: 10  DRYLSEEESVLLLVILVGSLILLAAVGHIFTPIFVAVVLAYLMQGVANQLY-KWGLSTRI 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              IAT+     F   +L L      ++  L  +     + G      L +    + + E
Sbjct: 69  GVWIATLMFTSAFFAFVLGLLPLVWRQLVSLAREAPAMVERGRAALSVLPEKYPAIISQE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                ++  Q         L T G   IP          L   + ++   + +FFF +D 
Sbjct: 129 QINLAMNSVQGDMAGLGQLLVTKGFSSIP--------GLLAVLVYMVLTPLMVFFFLKDR 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I     SL     P    +I   +     +   G  I  I  G V   A+   G+   
Sbjct: 181 DQILDWFTSLLPTERPML-SRIWSEMNIQFANYVRGKVIEIILVGGVSYIAFAFLGLNYA 239

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPF 299
             L ++  +  +IP  GA +    V      +  I  +    L     + ++D   L P 
Sbjct: 240 ALLALLVGLSVIIPYIGATLVTIPVVAVAFFQWGIGPSFYWALGAYGVIQLLDGNVLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L    + L  +     ++      G+ G+F    L  L++ I      A  E 
Sbjct: 300 LFSEAVNLHPVAIIIAVLFFGGVWGVWGVFFAIPLATLVSAIVSAWPTAGNEQ 352


>gi|302381466|ref|YP_003817289.1| hypothetical protein Bresu_0351 [Brevundimonas subvibrioides ATCC
           15264]
 gi|302192094|gb|ADK99665.1| protein of unknown function UPF0118 [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 380

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/337 (12%), Positives = 97/337 (28%), Gaps = 25/337 (7%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            + +  +  +LY+L+    P+  A+ +      +      +      +  + A + V   
Sbjct: 19  TLAVVAVGAALYWLRDILTPLAMAIFLMIMIDGVKRFIEDRTSLPDHWAGIAALLLVTVA 78

Query: 74  FIVPLLFLFYYGM---LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           F+  + F+         +   + S +       I     L  +     A EL        
Sbjct: 79  FVGAIAFIVNGAAGFFSDASGVSSGIGPRIDAIIADGAKLFGVTTPPTAQELIGSIDLRG 138

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
             + +  +     +G                    S   ++   F          + +  
Sbjct: 139 YLIGLAGQAQGVASG--------------------SFFVLVYLGFLLASQVGFRRKIIAM 178

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
             E        ++ + V   +       T+              + G+        +  +
Sbjct: 179 FPEREQRNEALEVFQRVRGGVEGYLWVQTVTGAIICAAAWILMRVVGLEHAEFWTFVIFV 238

Query: 251 MAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +  IP  GGA          L+     + A  L +   + LF+V   ++P + G    + 
Sbjct: 239 VGFIPVLGGAVAGLAPPLFALVQFPTYWPALILLVGLQVILFVVGNMIQPRMQGENQNID 298

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            +     L    +  G++G+F+   L  +   I  E 
Sbjct: 299 PVAVLLALALWGKMWGVVGMFLSTPLAVMAMAILAEF 335


>gi|57238926|ref|YP_180062.1| hypothetical protein Erum1930 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58578859|ref|YP_197071.1| hypothetical protein ERWE_CDS_01950 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161005|emb|CAH57911.1| putative integral membrane protein [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417485|emb|CAI26689.1| Conserved hypothetical protein [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 373

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 125/360 (34%), Gaps = 12/360 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  Q +   + + +IL++ + ++    P  +A+II +   P+ +     +      + +I
Sbjct: 8   LVNQYVTYGIAVAVILLAAFIMEPVLIPCCTAIIIAYLLNPLVNKLEKLRLPRQLSVLII 67

Query: 66  ATVSVMCLFIVP----------LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
              ++  +              LL L  + + ++  +    + +      +  +   I  
Sbjct: 68  LISALYIIIAFLIIFIPITYSQLLSLIKFLIEKIPIVSKNNISSFLQKYNISEYEEIIKA 127

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
                      L++     + +        ID I   A    +       +I+  +I LF
Sbjct: 128 IKLPESSLESLLNYDNIKSLFNIFGTGLKNIDTIFLGAINSSINIGYIVSTILITLILLF 187

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           +   +  SI +    L          + +  +  +I +   G   + +   +       +
Sbjct: 188 YILSNWPSIIKHATELIPIKHQKTVIEYTEKIDNIISAYIRGQLSVCLIMAIYYTICLCI 247

Query: 236 AGVPSHVALGVITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
             +   + +G+I+ +M  IP   P+  +  +  I +L   N      +     I   +  
Sbjct: 248 INLKYFLIIGLISGLMTFIPYIGPVFCTTISCIITMLQFNNWTTCGIVIAMFIIGQLVES 307

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             + P L+G  I +  +    G++     +G +G+ +   + A++ V  K  I     +K
Sbjct: 308 NVITPLLIGKRIDIHPIWIIIGMIICGSQIGFIGILLSIPITAVVGVFVKSIINQYMNSK 367


>gi|296186799|ref|ZP_06855200.1| sporulation integral membrane protein YtvI [Clostridium
           carboxidivorans P7]
 gi|296048513|gb|EFG87946.1| sporulation integral membrane protein YtvI [Clostridium
           carboxidivorans P7]
          Length = 351

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/327 (14%), Positives = 116/327 (35%), Gaps = 5/327 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + ++ ++I  I+ ++ +    +  P + AL+            +   +  S+  ++I T
Sbjct: 9   DKIVIFFIIYTIVFLTFFSTINYTLPFVLALLFALILKKPTKYIMRTFKIRSSIASLITT 68

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA-NQHGIPVPRWLSDI-PGGMWASELWTK 125
           ++   + ++ L F       E  +L   + L  +++   V     ++             
Sbjct: 69  ITFFTILVLILSFGIGMFTSEAIQLGKNIQLYISKNSSNVYDSFEELQKYYKNLDPNIIN 128

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            +    S  +   + +       I      F        + I+F ++A +FF +D   + 
Sbjct: 129 AVDKNFSSLVTKLSNITVFITGKIVSTLLGFLASIPYIIMVILFTLLATYFFTKDIVDVK 188

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            +  ++           I     K++ +  +   +I     L     +    V   + L 
Sbjct: 189 DKFLNIIPENKTDKIFYIYLETKKMLVNYIMSYMLIIGITFLETIIVFLFFKVKYAIVLS 248

Query: 246 VITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V+ A + ++P  G   I      IY+ +  N   A  + +   I + I+ + + P +V  
Sbjct: 249 VLCAFVDILPILGIGTIYIPLAIIYIFLFKNYITAFGIII-SYILVSIIRQIIEPKIVSS 307

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            + +  +     L  G++  G+ G+  
Sbjct: 308 SLGINPVAVLAALFIGLKLNGISGIIF 334


>gi|320009827|gb|ADW04677.1| protein of unknown function UPF0118 [Streptomyces flavogriseus ATCC
           33331]
          Length = 358

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/333 (16%), Positives = 114/333 (34%), Gaps = 22/333 (6%)

Query: 14  WMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            ++  +  V+++    LK    PVL AL+      P+     +    + +  A +   ++
Sbjct: 23  LLVAGVGAVAVWLSVTLKTAVTPVLLALLGTALLGPVQRWLTAH-GVNRSVAAGLTCAAL 81

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +       +    +    ++V  +  A Q       W+              + +++ 
Sbjct: 82  VAVVGGAGYIVVTALVDSGDQIVQSLKDAAQ-------WV--------IDHFDIEGVANV 126

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
             L   ++  ++  G        S    +      + +  ++  FFF RD    +    S
Sbjct: 127 DDLADNAKGLVEKFGASAAGGLLSGI-SLIGSLVTTSVLALLLTFFFLRDSDRAAHLAHS 185

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +         + + R   + +     G T IA+ + L +     +  VP    LG +  +
Sbjct: 186 VAPRGTGDLVEAMGRRAFEAVEGFMRGTTFIALIDALCITVGLLILRVPGAAGLGALVFV 245

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            A IP  GA IS     +  L    I  A  +         +    L+P +    +++  
Sbjct: 246 GAYIPYLGAFISGAVAVLVALADRGIVIALWVLGVVVAVQVLEGHVLQPVIQSRTVQMHP 305

Query: 310 LPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
                 L  G    GLLG+ +  P+  A + VI
Sbjct: 306 AMIMIALTAGASVAGLLGMLLAVPLCAAAVGVI 338


>gi|83815005|ref|YP_445462.1| transporter, putative [Salinibacter ruber DSM 13855]
 gi|83756399|gb|ABC44512.1| transporter, putative [Salinibacter ruber DSM 13855]
          Length = 442

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/323 (15%), Positives = 122/323 (37%), Gaps = 13/323 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P  +  ++ +   P+      + +      +++ T  V+ +F++ +L L      + +
Sbjct: 119 LVPFAAVYLLAYLLNPLVERLRERYQVPRWLPSLVVTSLVVGVFVLFILILAPNIANQAQ 178

Query: 91  ELVSKVVLANQHG---IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            L  +V+   Q     +     L  + G     +   + ++  Q+L       L +   +
Sbjct: 179 ALSDRVLGTVQTLRAWLEASTVLDALEGAGLLQK--QEVIAQLQALIKEQAGRLPSAAEN 236

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            +    S  G++ L     +  + + LF+  +D  ++   L  L                
Sbjct: 237 LVASLGSFLGVVTL-----LALVPVILFYTLKDYPTVQSGLVDLFPTAGGRR--DYLVEA 289

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVS 266
             ++   F G  +I+I   + +    +L  +P  + +G++  ++ +IP  GA I+    +
Sbjct: 290 GSIVGRYFRGQLLISIIATINVSVLLFLFDIPFWLLIGLLAGLLNLIPQIGALITMVVGA 349

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           +  LI G+   A  +      E  +    L P ++   + L  L   F L+     +G+ 
Sbjct: 350 LVALILGSWVKAVIVIAVLLGESLLEQSVLTPNILSYQVGLHPLLVLFSLLVFGTLLGVF 409

Query: 327 GLFIGPVLMALIAVIWKESIMAI 349
           GL I   + A++   ++     +
Sbjct: 410 GLLIAVPMTAILMTGYRAFREEL 432


>gi|148262712|ref|YP_001229418.1| hypothetical protein Gura_0633 [Geobacter uraniireducens Rf4]
 gi|146396212|gb|ABQ24845.1| protein of unknown function UPF0118 [Geobacter uraniireducens Rf4]
          Length = 348

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/337 (10%), Positives = 107/337 (31%), Gaps = 11/337 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + + I+  +++     + Y L+   +  L + ++ +   P       KK           
Sbjct: 8   SNRAIIGLLVIAAFFAAGYALRHTVSCFLLSFVLAYLIDPCVVYLERKKTPR-------- 59

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +  + +  + +  +  + +  +    +    +    +P            W  +    +
Sbjct: 60  -LYGILIVYLVIGLVSVFCIAYLLPFTTLAWDSLVRDLPRHVQKGKEIMLGWKDQFQPAY 118

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            +        + +         +           +    +II   I +FF      +I  
Sbjct: 119 GADEWQWLFDTLSTNMNKLFAKMSAGVYAAAANVVFNLFNIILSPILVFFMLYYKRNIID 178

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           ++ +          + + R + + +     G  ++++   ++   A +  G+   V  G+
Sbjct: 179 EIVAWLPAAHSDNIRALGREINQSVGGYIRGQMVVSLIVAVLSTIALFYLGIDYAVLNGI 238

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLVGGP 304
              + +++P  G  ++      +  +K          L     + F+    ++P +    
Sbjct: 239 FAGLASILPFIGVVLATIPPLFFAYVKFQSGVVLIKVLASFAAIYFLEGYVIKPLVFKES 298

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           + L  L T   ++     MG  G+ +   L A   +I
Sbjct: 299 MDLNPLFTIIIVMAFGELMGFWGILLAIPLAAAFKII 335


>gi|282881880|ref|ZP_06290531.1| putative permease [Peptoniphilus lacrimalis 315-B]
 gi|281298289|gb|EFA90734.1| putative permease [Peptoniphilus lacrimalis 315-B]
          Length = 415

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/362 (15%), Positives = 125/362 (34%), Gaps = 18/362 (4%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE------ESS 59
           LN +GI +  +  +       +  F    + A +I            +K +         
Sbjct: 51  LNQKGISKIFVTLLS-----IMFPFILGGVLAFMIKIVLNFFEEKLFNKIKSARFQKHKR 105

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
               +++   +  +  + L  +    +  + +L + +    Q  I   R ++ I      
Sbjct: 106 KISILVSIFVIFLIIFIILRIVVPQFISSISKLQTALPPLIQKAIDKSRNIAFIDEYSDK 165

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIP---RFASRFGMIFLDYCLSIIFMIIALFF 176
            +    HLS  +    + E          I    + A       L   ++ +  +I   +
Sbjct: 166 MQKIYDHLSVSKIFDQIREFVKNQGDNSSISTAFQRAYSTATNILGGIVNFVLALITAIY 225

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWK----KISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
              D   +  Q   +   +F          + +++ +       G  I +   G+++   
Sbjct: 226 ILSDKEHLEYQSKRIVYSIFSQKTSGKIFHVFKLLHQNFERFIRGQIIDSTVLGIIVFIF 285

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            +LA +P+   LGV+  +  ++P   P     +   L++  +   A    ++  I   + 
Sbjct: 286 SFLAKMPNATTLGVLAGVTNLVPIIGPFIGGFMGFVLIVIDDFSKAIIFVIFIFIMQQVE 345

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              + P LVGG + LP L T   +  G    G++G+++   L + I  +  E      + 
Sbjct: 346 SNLIYPKLVGGAVGLPALWTLIAITVGGSLFGVVGMWVFIPLTSTIYTLIGEYTKYKIDK 405

Query: 353 KE 354
           K+
Sbjct: 406 KD 407


>gi|271968820|ref|YP_003343016.1| hypothetical protein Sros_7599 [Streptosporangium roseum DSM 43021]
 gi|270511995|gb|ACZ90273.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021]
          Length = 355

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 74/200 (37%), Gaps = 2/200 (1%)

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            L   ++ +L   G + I   A        +    ++  +I   +F   G  +   +  L
Sbjct: 133 ELFEQAKQYLSGRGGE-IASGALAGVRTVGEILFGVVLAMILSVYFVHSGDRLVGWVIDL 191

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                    ++   ++  V+     G+ ++ + +G  +G A W+ GVP  + L V+T   
Sbjct: 192 APRGARRTLRESGAVIFDVVSRYIRGVALVGLVDGFFIGIALWILGVPIALPLAVLTFAG 251

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           A +P  GA  +    ++   +      A  +     +   +    L P + G  + LP  
Sbjct: 252 AFLPVVGAFAAGLLAAVVAFVAKGWLVALIVVAVTVLVQQLEGHVLAPQIYGRALDLPSA 311

Query: 311 PTFFGLVGGVRTMGLLGLFI 330
                +  G    G++G F+
Sbjct: 312 AILIIIALGSVLGGIVGAFL 331


>gi|209965064|ref|YP_002297979.1| hypothetical protein RC1_1769 [Rhodospirillum centenum SW]
 gi|209958530|gb|ACI99166.1| membrane protein, putative [Rhodospirillum centenum SW]
          Length = 370

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 88/249 (35%), Gaps = 12/249 (4%)

Query: 105 PVPRWLSDIPG---------GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASR 155
           P   W+  +P          G   +++    L+  +  ++          +   P  A+ 
Sbjct: 106 PATAWVRRLPVILSEVREKFGDIQAQIEQARLATERLQQMTGAGDAPPEVVVRGPSLAAE 165

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP-AYWKKISRIVPKVIRST 214
                          +   FFF   G    + +     H+    +   I   V   I + 
Sbjct: 166 ILSQTQIVMAQAAVTLALTFFFLAFGRHTLESVLRSLPHVRDRLHLVDIVNTVQINISAY 225

Query: 215 FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKG 273
            + +T+I      V  +  W  G+P+ V  G I  ++  IP  G+  +   ++I  L+  
Sbjct: 226 LMTITLINSALAFVTATLLWALGMPNPVLFGGIAGLLNFIPYIGSACTTIILAIVALLSF 285

Query: 274 NIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
           + + A  L     I L  ++   + P +VG  + L  +  F  ++      G+ G  +  
Sbjct: 286 DTWWAVLLPPACFIMLTALEGNFVTPTIVGRRLTLNPIFVFATVLFWGWLWGMPGALLAV 345

Query: 333 VLMALIAVI 341
            ++A+  ++
Sbjct: 346 PILAVFKIL 354


>gi|327537466|gb|EGF24190.1| protein belonging to uncharacterized protein family UPF0118
           [Rhodopirellula baltica WH47]
          Length = 435

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/338 (14%), Positives = 106/338 (31%), Gaps = 13/338 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G++  +   + L  LY       P+  A +   +  PI +             A     
Sbjct: 68  RGMVTAIAAILTLGMLYIASDLLVPIAIAALAYLSLRPIEAKICR--WGVPQAAASAM-- 123

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               L +     L     L        +  A +    +      +   + A +     + 
Sbjct: 124 ----LIVGLFSSLALIIALLYSPAQQWLTSAPESLAAIRSKFQSVAEPLTAVDRAGTAVD 179

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                    E  ++           +            +  + +  FF    G  +  + 
Sbjct: 180 DATIPLKEDEPRIEVAYQKPSIVDETVLINQTGQMLAFVAAIAVLTFFMLSTGDDLLNRT 239

Query: 189 DSLGE--HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
             +           KKI   + + +      +T I IG G+ +    WL G+P+ V  GV
Sbjct: 240 LGVLPNSRSRGEVLKKIGD-IQQSVGRYLAQITCINIGLGVAVTFVMWLVGMPTPVLWGV 298

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDK-TLRPFLVGGP 304
           + A+   IP   P++ T++         +  +  CL  +       V+   + P ++G  
Sbjct: 299 MAALFNFIPYVGPLAATSIVFLAAASSFDTMSRACLTAFAFWLTTAVEGQFVTPTILGKT 358

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +K+  +     +       GL G+F+   L+ +   I+
Sbjct: 359 LKVGPVVVLIAVAFWGFLWGLSGVFLAVPLLIVQRKIF 396


>gi|313633275|gb|EFS00138.1| membrane protein YdbI [Listeria seeligeri FSL N1-067]
 gi|313637865|gb|EFS03195.1| membrane protein YdbI [Listeria seeligeri FSL S4-171]
          Length = 345

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/358 (13%), Positives = 115/358 (32%), Gaps = 26/358 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  + + R+ +  ++   LY L+     +L   I  +    + +  + +       + ++
Sbjct: 8   LQNKSVKRFGVFLLLAFVLYLLRSQMNIILLTFIFSYLITRLENFILRRISIYRQIIVLL 67

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V +  + ++  +        ++ +LV+                               
Sbjct: 68  LYVVIATVIVLVFVKYIPVLGDQVNQLVNFANKFFTT---------------------DS 106

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +      +  L+  F      +        +        +++   ++   FF      + 
Sbjct: 107 NNDFINYIINLANQFDIMKYTEQGVTMLLTYLTNVGTVLMNVFIALMLSLFFSLGKDHLV 166

Query: 186 QQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              +          +++                    IIA+   ++   A W+ G P  +
Sbjct: 167 SFTNQFSTSKIGFIYEEAKFFGSKFVGTFGKVIEAQFIIALVNAVLTTIALWILGFPQLM 226

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L ++  ++ +IP  G  IS   ++I     G +     + +   I   +    L P L+
Sbjct: 227 TLSIMVFLLGLIPVAGVIISLVPLTIIGYSIGGVEYIFYILIVVMIIHALESYVLNPKLM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKEKISS 358
                LP   TF  L+ G    G+ GL +G PV+M  + V+       I++    IS 
Sbjct: 287 SAXXXLPVFYTFIILIFGEHFFGIWGLIVGIPVVMFFLDVLGVTGQEEIEQPNNTISH 344


>gi|296332814|ref|ZP_06875274.1| putative integral inner membrane protein [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305673160|ref|YP_003864832.1| putative integral inner membrane protein [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150094|gb|EFG90983.1| putative integral inner membrane protein [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305411404|gb|ADM36523.1| putative integral inner membrane protein [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 350

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 58/354 (16%), Positives = 111/354 (31%), Gaps = 21/354 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G+ R+ I  ++   LY  K     +L   I  F    +                 +    
Sbjct: 12  GVRRFSIFVVLTGVLYLFKSMINLILLTFIFTFLMDRLELVVRQFLSRFFRVSQRVVITF 71

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +  L  V L    +     +   + ++V   +H    P     IP     + ++      
Sbjct: 72  LYMLLAVLLTVGGFVFYPVVAAQIQQLVKQIKHIAYHPD---TIPFFDEITSVFGDINIS 128

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                          G + +  + +        + L I+  +I   FF  +   +++ + 
Sbjct: 129 SYV----------KEGFNVVYTYLADIST----FGLQIVMALILSMFFLFEKKRLTEFMA 174

Query: 190 SLGEHLFPAYWKKIS---RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
                    ++++IS       +          IIA+   ++   A W+   P    L +
Sbjct: 175 KFKTSKLRVFYEEISFFGSKFARTFGKVLEAQFIIALVNCILTFIALWIMHFPQLFGLSI 234

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +   + +IP  G  IS   +SI     G       + L       I    L P L+    
Sbjct: 235 MVFFLGLIPVAGVVISLIPLSIIAYSTGGGMYVLYIVLVIFAIHAIETYFLNPKLMSAKT 294

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +LP   TF  L+      G+ GL IG  +   +  I   +       + +  SN
Sbjct: 295 ELPIFFTFTVLIFSEHFFGIWGLIIGIPIFVFLLDILDVTNKEEGPKRFQEKSN 348


>gi|170690474|ref|ZP_02881641.1| protein of unknown function UPF0118 [Burkholderia graminis C4D1M]
 gi|170144909|gb|EDT13070.1| protein of unknown function UPF0118 [Burkholderia graminis C4D1M]
          Length = 651

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 61/169 (36%), Gaps = 7/169 (4%)

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           + I +++ +F   +      + +   G          I+    ++ R  F+    + +  
Sbjct: 193 TFIVLVVTIFILLQREDLRDRLISLFGSRDLHRTTTAINDAAVRLSR-YFVAQLGVNLSA 251

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           G V+     + GVP  +  GVI A++  +P      + A  + + +   I     + ++ 
Sbjct: 252 GGVIAIGLAIIGVPGALLFGVIAALLRFVPYIG--IWIAAILAVFLAAAIQPQWTMAVYT 309

Query: 286 AIELFIVD----KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            I   +VD    +   P L G    L  L      +      G +GL +
Sbjct: 310 LILFIVVDVVAGQIAEPLLYGHRSGLSPLAVVVAAIFWSWLWGPIGLVL 358


>gi|266619979|ref|ZP_06112914.1| sporulation integral membrane protein YtvI [Clostridium hathewayi
           DSM 13479]
 gi|288868443|gb|EFD00742.1| sporulation integral membrane protein YtvI [Clostridium hathewayi
           DSM 13479]
          Length = 362

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/342 (15%), Positives = 111/342 (32%), Gaps = 14/342 (4%)

Query: 13  RWMIMFIILVSLYFLKGF---------FAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           R  I+     S+ FL  F          +P ++A +I +           K   +    A
Sbjct: 7   RAFIIHFAYFSILFLMAFTVLKYGLSMLSPFVAAFLIAWVLKGPIGFVSGKLRLNWKPAA 66

Query: 64  VIATVSV---MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           ++  +     +   I  L         E+   +  +         +  + S         
Sbjct: 67  ILVVLLFYSTIGFLIFLLGVKALSAAKELTANLPGIYAYYVEPALISLFDSFEQSIFRVD 126

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                     ++  + S   + +          S          + I+ MII+ FF   D
Sbjct: 127 NTLLAAFMELETQFVQSAGQMVSGLSMDAMGHISGIASSLPGLFIEILLMIISTFFIALD 186

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              ++       +      + +I   V   +        +I     + L     + GV +
Sbjct: 187 YHRLTGFCLMQLDGKAKDVFFQIKEYVVGTLLVCIRSYALIMTITFVELAVGLSVIGVKN 246

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            V +  + A+  ++P  G        +I   ++G+        L   + + +V   L P 
Sbjct: 247 SVLIAFLIALFDILPVLGTGGIMIPWTILTALQGDY-PLALGLLLVYLFVTVVRNILEPK 305

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +VG  I +  + T  G+  G +  G+LGLF  P+ ++L+  +
Sbjct: 306 IVGSQIGVHPVVTLAGMFVGAQLFGVLGLFGFPIGISLLRHL 347


>gi|170078569|ref|YP_001735207.1| hypothetical protein SYNPCC7002_A1964 [Synechococcus sp. PCC 7002]
 gi|169886238|gb|ACA99951.1| Protein of unknown function PF01594 [Synechococcus sp. PCC 7002]
          Length = 373

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/322 (16%), Positives = 119/322 (36%), Gaps = 8/322 (2%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
              ++ A++I  T  P+  +             +   + ++ +    +L +    + +++
Sbjct: 33  LVVLMIAVVIAATLAPV-ITIAESFRVPRWLAVIGVYLGLISILTGVVLLIGPTVVDQIQ 91

Query: 91  ELVSKVVLANQH-GIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           +L+ K+ L  +  G+ V  W   +             L   Q+L   +           +
Sbjct: 92  KLIRKLPLYLEIVGVLVQSWAVRLGMTEPQVLEQLNRLFDLQALTAWA-----FRSSQEL 146

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
              +       +   LS+I   +   +       + +   SL    +     +  + + +
Sbjct: 147 LIRSYGITRGVIGGILSLILAFMLSGYMLSGSDKLIKGFVSLFPAPWDEQLLEQVQPMSE 206

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGV-PSHVALGVITAIMAMIPGGAPISFTAVSIY 268
            + S   G  +++   G+V+     L G+    + LGVI A+  +IP   P+     ++ 
Sbjct: 207 RMGSYIQGRIVVSGILGIVITIGLRLLGISELALGLGVIAAVTNLIPFFGPVLGAVPALI 266

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           + I    +    + L   +   +    L P LVG  +K+  L     ++GG + +G+LG 
Sbjct: 267 VAIAQGGWTFLSVLLLFTLIQNLETYVLDPLLVGSSVKVNPLYQLLAVLGGAQVLGILGA 326

Query: 329 FIGPVLMALIAVIWKESIMAIK 350
            I P  +A  AV+     +  K
Sbjct: 327 VIVPPWVAGAAVLLDNLYLKTK 348


>gi|325281691|ref|YP_004254233.1| hypothetical protein Odosp_3090 [Odoribacter splanchnicus DSM
           20712]
 gi|324313500|gb|ADY34053.1| protein of unknown function UPF0118 [Odoribacter splanchnicus DSM
           20712]
          Length = 368

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 128/361 (35%), Gaps = 24/361 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAP----VLSALIIGFTSWPIYSSFIS-KKEESS---T 60
             + ++++  + L    F   +F      +L A +I F   PI       K         
Sbjct: 2   NSVTKYVLGIVALAGAIFFSWYFFSVIVYILVAAVISFIGRPIIDLLGRVKIRGYRLPDG 61

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A I  + +  LFI+    +    + E + L +  V      + +P     I       
Sbjct: 62  LKAGITVICLWGLFILFFSTIIPLAIREFQSLGNVSVSNIVSELEIP-----IEDAGHFM 116

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           + +            +++   K   +  +  +         D  +++  +   LFFF +D
Sbjct: 117 KHYGLMDEDQDVDAYVTDLLSKVFNVGQLKTWFGTVAGTMTDIFVALFSITFILFFFLKD 176

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL--AGV 238
               S  + ++    F    +     + K++   F+G+ +  +G   +      +   G 
Sbjct: 177 SRLFSGMVMAVLPSRFEEQARNALDSIQKLLVRYFVGLLLEVLGVMALNTIGLTIVGLGF 236

Query: 239 PSHVALGVITAIMAMIPGGAPI--SFTAVSIYLLIK------GNIFNATCLFLWGAIELF 290
            + V +G++T ++ +IP   P+   F  +++ +++         +           +   
Sbjct: 237 SNAVVIGLVTGVLNVIPYIGPMIGVFFGLAVGVVLNLGLDFYDQMLPLLIYMTIAMLLTQ 296

Query: 291 IVDKTL-RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           ++D  + +PF+ G  +    L  F  ++      G+LG+ +      ++ V+ KE     
Sbjct: 297 LIDNVVFQPFIYGSSVHAHPLEIFLVILMAGSMAGILGMILAIPSYTVLRVVLKEFFNKY 356

Query: 350 K 350
           K
Sbjct: 357 K 357


>gi|126699668|ref|YP_001088565.1| hypothetical protein CD2051 [Clostridium difficile 630]
 gi|115251105|emb|CAJ68936.1| putative membrane protein [Clostridium difficile]
          Length = 361

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/318 (11%), Positives = 108/318 (33%), Gaps = 4/318 (1%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           FF+P L A+++     P+   F  K +        ++ + +  +    +  L       +
Sbjct: 42  FFSPFLLAILLALLLNPLVMLFEVKFKAHRLLAIFLSYIFIGFILAFAIRLLIPSIANTL 101

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             L++++ +   +         ++    +   L         +L   +  F+     +F+
Sbjct: 102 NRLINEMPMYTDYIDSFIE--KNMSNIDFLKTLIPHIQHSLDNLLKEASNFVGKIPKNFL 159

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
             +      +  +  +  I  I  ++   +      + L S           +  R    
Sbjct: 160 I-YTLSISSMLFNMTMGFILSIYIIYDKEKIALGFKRFLYSSTARSKADNIIEFFRTTHD 218

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAY-WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           +     LG  + ++  G++    + ++  + + + L  I  +  +IP   P       I 
Sbjct: 219 IFYDYLLGRILDSLIIGIIAFLGFQFVIRIENALFLASIIFLGNIIPYFGPFIGAIPPIA 278

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           + I  +      +  +  I   +    + P ++G  + +  +     ++ G    G +G+
Sbjct: 279 MTILYSPQKTIWVIAFLFILQQLDGNFIEPKVMGNQVGIGAIWVISAILVGQSLFGFIGV 338

Query: 329 FIGPVLMALIAVIWKESI 346
           F+   + A++     + I
Sbjct: 339 FLSVPIAAVVKTYVDKYI 356


>gi|291166115|gb|EFE28161.1| membrane protein [Filifactor alocis ATCC 35896]
          Length = 365

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 54/353 (15%), Positives = 113/353 (32%), Gaps = 29/353 (8%)

Query: 14  WMIMFIILVSLYFLK-------------GFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
             I  ++LV    ++             G   P   A  I F   P+      K++ +  
Sbjct: 12  IFIATVLLVIYQIIQNYEWFFSFAYRVLGILVPFFWAFGIAFLLNPLMVYIEKKRKFNR- 70

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               I T+  +  F++    L    ++   +LV  +    ++       + +    +  S
Sbjct: 71  ----IVTLLFIYTFLI--GVLTLLVVIVTPQLVKSITDIIKNMPDYYDIVENKISVLLDS 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY---CLSIIFMIIALFFF 177
           + +        ++   S   L  +  D+     S      +      L  I  +I   + 
Sbjct: 125 KFFEN--PELNTMVKDSVDTLAKSTFDYFNDSLSDIFSRLIGLTSGFLQFIVGLIVSIYM 182

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKIS----RIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
             D          +   LF A           +   V +  F+G ++ +   GL+  +  
Sbjct: 183 LYDKEYFKLSSKKIVYRLFGAQKGDFIIHWGNVTNTVFQEFFIGKSLDSFIIGLLCWAGL 242

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
                P    L +I  I  MIP   P       ++L        A    ++  I      
Sbjct: 243 LFLNAPYPFLLAIIVGIFNMIPYVGPFIGAIPVVFLSFFVKPITALWAAIFILILQQFDG 302

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
             L P ++G  + +  +     +  G    G+LG+ +G  +  L+++I  + +
Sbjct: 303 NVLGPKILGNRMGIKPISVMLAIFIGGGLFGILGMLVGVPIFKLLSIIIDQFV 355


>gi|239993472|ref|ZP_04713996.1| hypothetical protein AmacA2_03147 [Alteromonas macleodii ATCC
           27126]
          Length = 346

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/315 (15%), Positives = 108/315 (34%), Gaps = 22/315 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +++  +        P   ++ I     PI     + K     +L++   + ++ +F  
Sbjct: 19  LVVVMAGIKAASTIMVPFFLSIFIAIACSPIIRW--TSKFGVPKWLSITFVILLIVVFGF 76

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L  L    M E +E + +                           W        ++ I 
Sbjct: 77  LLAGLVGQSMTEFRENLPEYRSKLDTEFA-----------------WVVSKLAEFNIHIN 119

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            E              A+ F         ++  +++ + F   +  SI ++L        
Sbjct: 120 RELIASHLDPATAMSVATNFISGMGGVLSNLFLILLTVIFMLFEADSIPRRLHIAL--AD 177

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
           P    K      + + S     T++++G GL++G   ++ GV   +   V+  ++  IP 
Sbjct: 178 PGMKLKHIDRFIRSVNSYLAIKTVVSLGTGLIIGIWLYVMGVDHFMLWAVLAFMLNFIPN 237

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ I+     +   ++    +A    L   +   I+   + P L+G  + L  L  F  
Sbjct: 238 IGSIIAAVPAVLIAFVQLGPASAGFAALGFVLVNTIMGNMVEPRLMGKGMGLSTLVVFLS 297

Query: 316 LVGGVRTMGLLGLFI 330
           L+     +G +G+ +
Sbjct: 298 LIFWGWLLGTVGMLL 312


>gi|223984398|ref|ZP_03634537.1| hypothetical protein HOLDEFILI_01831 [Holdemania filiformis DSM
           12042]
 gi|223963640|gb|EEF68013.1| hypothetical protein HOLDEFILI_01831 [Holdemania filiformis DSM
           12042]
          Length = 369

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/323 (16%), Positives = 112/323 (34%), Gaps = 14/323 (4%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           +  L  L+    P L    I +   P +  F+ KK  S      +  + ++ L I  L+ 
Sbjct: 41  MSWLTTLRLILTPFLVGFGIAYVVHP-FIEFLQKKGVSRRIAIPLVCLGMLTLLIGILMM 99

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           +      +  EL++ ++            +++    +  + ++ +  +     K     F
Sbjct: 100 VVPMVYDKTTELINSMISGLNWLYQQYVEMNENAPNILVAGIFQQITTLLNDTKSWLPNF 159

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
                   +P+  S+      +   + I  +  LF F      I + + SL         
Sbjct: 160 -----SALLPQLISKVLSFLTNAVFAFIISVYVLFDF----EKIRKTIFSLA-RTIDKEL 209

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
                 V   I      + ++   + L     Y L G  S + + ++T+I  ++P     
Sbjct: 210 PIYLSAVNAEISGYLHSLLMLMAIKFLEYSLLYMLIGHKSAITIALLTSIGLIVPYFGAT 269

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGG 319
               + I   +           + G   L +VD   + P +     ++P L T   +  G
Sbjct: 270 VANFIGILTSLT-LPLPKVLFLIGGICVLSMVDAYIIAPIVHSRSSQVPPLWTLLCVFAG 328

Query: 320 VRTMGLLGLFIG-PVLMALIAVI 341
              +G +G+ I  PV M+L  ++
Sbjct: 329 GMLLGPIGIMISIPVFMSLRVIV 351


>gi|58616916|ref|YP_196115.1| hypothetical protein ERGA_CDS_01890 [Ehrlichia ruminantium str.
           Gardel]
 gi|58416528|emb|CAI27641.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel]
          Length = 373

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 125/360 (34%), Gaps = 12/360 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  Q +   + + +IL++ + ++    P  +A+II +   P+ +     +      + +I
Sbjct: 8   LVNQYVTYGIAVAVILLAAFIMEPVLIPCCTAIIIAYLLNPLVNKLEKLRLPRQLSVLII 67

Query: 66  ATVSVMCLFIVP----------LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
              ++  +              LL L  + + ++  +    + +      +  +   I  
Sbjct: 68  LISALYIIIAFLIIFIPITYSQLLSLIKFLIEKIPIVSKNNISSFLQKYNISEYEEIIKA 127

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
                      L++     + +        ID I   A    +       +I+  +I LF
Sbjct: 128 IKLPESSLESLLNYDNIKSLFNIFGTGLKNIDTIFLGAINSSINIGYTVSTILITLILLF 187

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           +   +  SI +    L          + +  +  +I +   G   + +   +       +
Sbjct: 188 YILSNWPSIIKHATELIPIKHQKTVIEYTEKIDNIISAYIRGQLSVCLIMAIYYTICLCI 247

Query: 236 AGVPSHVALGVITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
             +   + +G+I+ +M  IP   P+  +  +  I +L   N      +     I   +  
Sbjct: 248 INLKYFLIIGLISGLMTFIPYIGPVFCTTISCIITMLQFNNWTTCGIVIAMFIIGQLVES 307

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             + P L+G  I +  +    G++     +G +G+ +   + A++ V  K  I     +K
Sbjct: 308 NVITPLLIGKRIDIHPIWIIIGMIICGSQIGFIGILLSIPITAVVGVFVKSIINQYMNSK 367


>gi|293401382|ref|ZP_06645525.1| putative membrane protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305020|gb|EFE46266.1| putative membrane protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 405

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 78/235 (33%), Gaps = 16/235 (6%)

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           W K +S+  +    S + + ++  +FI  FA  F                   +      
Sbjct: 162 WEKIVSNAIAFLSGSASGILSSASNFISSFAVGFTGFMFSL------------YLLSGKE 209

Query: 183 SISQQLDSLGEHLFPAYWK----KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +  +QL  +              + +  V ++  S   G    A    ++      L   
Sbjct: 210 NFIRQLRKVTAAFCGYDASLIVFQYASRVNRIFSSFIGGQLTEACILWVLYYVCMRLFQF 269

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P    +  + A+ +++P    +   +V   +++  +   +    ++  +  +  D  + P
Sbjct: 270 PYPELICTLIAVCSLVPVFGSMFAMSVGAIMMLSHDPLQSIWFIVFYQVISYFEDNVIYP 329

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            +VG  + LP L     +       G+ G+ +     A + V + E I      K
Sbjct: 330 RVVGNSVGLPGLWVLLSIFVFGDLWGVFGMVMAVPTTACLYVFFAEFINNRLRKK 384


>gi|325108379|ref|YP_004269447.1| hypothetical protein Plabr_1815 [Planctomyces brasiliensis DSM
           5305]
 gi|324968647|gb|ADY59425.1| protein of unknown function UPF0118 [Planctomyces brasiliensis DSM
           5305]
          Length = 405

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/316 (13%), Positives = 103/316 (32%), Gaps = 16/316 (5%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            P+  A+++     P+  SF   K            + VM   +       ++     ++
Sbjct: 78  MPLTMAVLLYLVLRPVMKSFA--KWHVPAVAGATICLVVMSAIV---FGAIFFLTQPTRQ 132

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
            V+               L +    +         +++      +    ++      +P 
Sbjct: 133 WVNDAPGYMYQLKLKLSGLEEQLENVEEVSDKISDVTNGNDADEIKPMPVEIKQPRLLPG 192

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH-LFPAYWKKISRIVPKV 210
                      +   ++     LFF    G  + + L +             +   +   
Sbjct: 193 L--NLLSSTGGFAAGLVITFGTLFFLLAYGDEMIENLIAGFRTGESRKRAHMLIFDLQHG 250

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-----GAPISFTAV 265
           + S  L +T+I    G+  G+A WL G+P+ + +G +  +   IP      G  I F   
Sbjct: 251 MSSYLLTITVINALLGVATGTAMWLLGMPNPLLIGTMAFLFNYIPFLGAWVGTGIVFVVA 310

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            +      +   A  + +       +  + + P ++G  + +  L  F  L       G+
Sbjct: 311 VLQF---DSFAYALLVPVTYFTLTSLEGQFITPCILGRSMSMNPLLVFLFLAVWGWIWGI 367

Query: 326 LGLFIGPVLMALIAVI 341
            G+F+   L+A++ ++
Sbjct: 368 GGVFLAVPLLAVLKIV 383


>gi|119487278|ref|ZP_01621029.1| hypothetical protein L8106_21177 [Lyngbya sp. PCC 8106]
 gi|119455833|gb|EAW36968.1| hypothetical protein L8106_21177 [Lyngbya sp. PCC 8106]
          Length = 321

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/329 (13%), Positives = 106/329 (32%), Gaps = 11/329 (3%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + ++       +A+I+      I    + K+         I+   +  +    +  +   
Sbjct: 2   WKIRQVLLLAFTAIILATAINRI-VKLLQKQGMKRGVAVGISVFFLFLVLAGFVSIIVPP 60

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + + +EL+++V +  +        L D+            +L  P+ L           
Sbjct: 61  VIDQWQELITQVPMGFEQLKTWYLGLQDLIPSRIFG-----NLQSPERLLEQIPDPGFGL 115

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
             +    F++  G+      L+++ +I        D     +    +    +     +I 
Sbjct: 116 FNNVFSLFSTSLGI-----TLNVVLVIAVTIMLLSDPTPYRRNFILIFPAFYRPRVNEIL 170

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
               + +    +G+        L+ G   W+ G+   +   ++   +  IP   P     
Sbjct: 171 NECEQNVVGALVGLLFNMTVITLLSGIGLWILGIRLALVNALLAGFLTFIPNIGPTISVI 230

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
               L +    + A  +         I    L P ++   + L    T    V      G
Sbjct: 231 PPALLALMDAPWKALAVIGLYIAIQQIESNILTPLVMKHEVSLLPAITLLSQVIFTIFFG 290

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENK 353
            LGL +   L+A++ V ++E ++    N+
Sbjct: 291 TLGLLLAIPLVAVLQVWFREMLVKDVMNQ 319


>gi|307265212|ref|ZP_07546771.1| protein of unknown function UPF0118 [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919834|gb|EFN50049.1| protein of unknown function UPF0118 [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 256

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 68/175 (38%)

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
            F+  +D     ++++ +    +   +  + + + K++         ++I   +      
Sbjct: 81  TFYLLKDKNVFEKEIERMIPSKYHDSFFALLKKIDKILSKYIRAQIYLSIFVAIFTSIGL 140

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
            L  V     +G++  I+ +IP   PI     ++ + +  ++       L   +   I +
Sbjct: 141 SLIKVKYAFLIGILAGILNIIPYIGPILSIIPAVLIGLLDSLSKGFWALLVCLLVQQIEN 200

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             + P ++   + L  +   F L+ G    G+ GL +   ++A+  VI  E  + 
Sbjct: 201 AFITPKIISDSVGLHPITVIFSLIAGEELFGVWGLLLSVPVVAIGKVIVTEIFIE 255


>gi|255527660|ref|ZP_05394519.1| sporulation integral membrane protein YtvI [Clostridium
           carboxidivorans P7]
 gi|255508640|gb|EET85021.1| sporulation integral membrane protein YtvI [Clostridium
           carboxidivorans P7]
          Length = 349

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/327 (14%), Positives = 116/327 (35%), Gaps = 5/327 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + ++ ++I  I+ ++ +    +  P + AL+            +   +  S+  ++I T
Sbjct: 9   DKIVIFFIIYTIVFLTFFSTINYTLPFVLALLFALILKKPTKYIMRTFKIRSSIASLITT 68

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA-NQHGIPVPRWLSDI-PGGMWASELWTK 125
           ++   + ++ L F       E  +L   + L  +++   V     ++             
Sbjct: 69  ITFFTILVLILSFGIGMFTSEAIQLGKNIQLYISKNSSNVYDSFEELQKYYKNLDPNIIN 128

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            +    S  +   + +       I      F        + I+F ++A +FF +D   + 
Sbjct: 129 AVDKNFSSLVTKLSNITVFITGKIVSTLLGFLASIPYIIMVILFTLLATYFFTKDIVDVK 188

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            +  ++           I     K++ +  +   +I     L     +    V   + L 
Sbjct: 189 DKFLNIIPENKTDKIFYIYLETKKMLVNYIMSYMLIIGITFLETIIVFLFFKVKYAIVLS 248

Query: 246 VITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V+ A + ++P  G   I      IY+ +  N   A  + +   I + I+ + + P +V  
Sbjct: 249 VLCAFVDILPILGIGTIYIPLAIIYIFLFKNYITAFGIII-SYILVSIIRQIIEPKIVSS 307

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            + +  +     L  G++  G+ G+  
Sbjct: 308 SLGINPVAVLAALFIGLKLNGISGIIF 334


>gi|91086043|ref|XP_973506.1| PREDICTED: similar to conserved hypothetical protein [Tribolium
           castaneum]
 gi|270010191|gb|EFA06639.1| hypothetical protein TcasGA2_TC009562 [Tribolium castaneum]
          Length = 903

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 76/206 (36%), Gaps = 7/206 (3%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
           G   L++ L+ I  +  LF+       + + ++ + +  F    ++    +   I   F 
Sbjct: 696 GTAVLNFILNGIVFLTTLFYLLSSSGDLYKPVELMTK--FSTSGRRFGHALEGAINGVFT 753

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNI 275
               +A   G+     + L GV           I+  +P  G   +     + L +  + 
Sbjct: 754 ASFKMAAFYGMWTWFIHNLFGVKIVYLPSAFATILGAVPFLGTYWACFPAVLDLWLAQDR 813

Query: 276 -FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
              A    ++  +   IVD T+   + GG        T   + GG+  +G+ G  +GP+L
Sbjct: 814 GIEAIVFAIFQFLPTSIVDTTIYKEIKGGG---HPYLTGLAIAGGIFCLGVEGAIVGPLL 870

Query: 335 MALIAVIWKESIMAIKENKEKISSNF 360
           +  + V    S    KE+  +   N 
Sbjct: 871 LCGLYVAIDLSSSLFKESPSEEPINL 896


>gi|138896105|ref|YP_001126558.1| hypothetical protein GTNG_2468 [Geobacillus thermodenitrificans
           NG80-2]
 gi|134267618|gb|ABO67813.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 262

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 81/239 (33%), Gaps = 9/239 (3%)

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD-------YCLSIIFMI 171
             + W  + S      I S           +  FA+      +        + +  +  +
Sbjct: 21  LIQTWQSYSSSIPQEIIDSLERSVNTVQQMLLSFATNLTQSLVHYIAAIPAFFIHFLVYL 80

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
           +ALF    D   + Q +              +   + K          + ++    +  +
Sbjct: 81  VALFLICLDLPQLKQGIRRYLSERTHQRLSMVVSQLSKAGVGFIKAQFLFSLVTFFLALA 140

Query: 232 AYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
              + GV     +  I  ++ ++P  G         I  +I G+      L +   + + 
Sbjct: 141 GLLILGVDYAALMAFIIVVVDILPILGTGSVLVPWGIISIINGSTALGIGLIVL-FVIIT 199

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           +V + + P +    + +  L     +  G + +GLLG FIGPV++ L+  + K  ++  
Sbjct: 200 VVRRIIEPKVFSTNLGISPLAALVSVYLGFQILGLLGAFIGPVIVILVETLVKAGVIKW 258


>gi|293552763|ref|ZP_06673424.1| transport protein [Enterococcus faecium E1039]
 gi|293559692|ref|ZP_06676220.1| transport protein [Enterococcus faecium E1162]
 gi|293569936|ref|ZP_06681023.1| transport protein [Enterococcus faecium E1071]
 gi|294615221|ref|ZP_06695102.1| transport protein [Enterococcus faecium E1636]
 gi|291587684|gb|EFF19561.1| transport protein [Enterococcus faecium E1071]
 gi|291591945|gb|EFF23573.1| transport protein [Enterococcus faecium E1636]
 gi|291603072|gb|EFF33263.1| transport protein [Enterococcus faecium E1039]
 gi|291606367|gb|EFF35773.1| transport protein [Enterococcus faecium E1162]
          Length = 345

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 119/356 (33%), Gaps = 23/356 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  L  + I R  ++  ++  L+ ++     +L   I  +    +           +  L
Sbjct: 5   QRFLANEKIRRLTVLLFVVFVLFLVRSMITTILLTFIFTYLMIHLVQIIQRFVRIPTGVL 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A++    ++ L  +         + +  +++  V+   +H           P   +    
Sbjct: 65  AIMIYTLIVYLIYLAFTKYIPMLIHQTFDMIQSVIDFYEHQPKDAD-----PVLQYIHTY 119

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             ++    Q            NG      +    G + + + +S I      FFF  +  
Sbjct: 120 IERNDFFEQL----------QNGASIALGYLQDIGKMAVAFAMSFILS----FFFMIEKK 165

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVP 239
                     +  F  +++ I     K + +         +IA+   L+   A  + G  
Sbjct: 166 KTIVFSRLFLKSEFSWFFQDIYYFADKFVNTFGLVLEAQFVIALLNTLLTTIALAVFGFH 225

Query: 240 SHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             ++L ++  I+++IP    I     +S     +G I +   + +   I   I    L P
Sbjct: 226 QLLSLAIMIFILSLIPVAGVIISCIPLSFIAYSQGGIRDVVYILITILIVHLIESYVLNP 285

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            L+    +LP   TF  L+   R  G+ GL +G  +      + K   +     KE
Sbjct: 286 KLMSSKTELPIFYTFVVLLVSERFFGVWGLIVGIPIFTFFLDVLKVKKIPNHLPKE 341


>gi|300113927|ref|YP_003760502.1| hypothetical protein Nwat_1251 [Nitrosococcus watsonii C-113]
 gi|299539864|gb|ADJ28181.1| protein of unknown function UPF0118 [Nitrosococcus watsonii C-113]
          Length = 383

 Score = 67.9 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 70/192 (36%), Gaps = 6/192 (3%)

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK--KISRIVPKVI 211
              G +     ++ + M++ LF     G +  ++L  +            +I   +   I
Sbjct: 173 GSLGAMAFVGQVATVVMLVLLF--LTSGDTYKRKLVKITGPTLSKKKVTVEILDDINIQI 230

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLL 270
           R     + I     GLV   A+   G+      G+I  + + IP  G  + F A +I  L
Sbjct: 231 RRYLFVLVISGAFVGLVTWGAFLWIGLEQAALWGLIAGVASTIPYLGPAMVFAATTIVAL 290

Query: 271 IK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            + G +     +     +   I    L P+L      L  +  F GL+      G +GL 
Sbjct: 291 AQFGTLTMGLTVGAISLLITGIQGYWLTPWLTSRTSSLNAVVVFVGLLFWGWLWGPIGLI 350

Query: 330 IGPVLMALIAVI 341
           +   ++ +I V 
Sbjct: 351 VATPILIIIKVC 362


>gi|260662013|ref|ZP_05862909.1| EpsX protein [Lactobacillus fermentum 28-3-CHN]
 gi|260553396|gb|EEX26288.1| EpsX protein [Lactobacillus fermentum 28-3-CHN]
          Length = 366

 Score = 67.9 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 54/331 (16%), Positives = 118/331 (35%), Gaps = 15/331 (4%)

Query: 32  APVLSALIIGFTSWPIYSSFISK-----KEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
            P+L   +I +    +   +        K + +   A +  + +  L IV ++ +    +
Sbjct: 41  MPLLIGCVIAYIVNLLMVRYEGLYHRVFKGQRAQRFARVTALCLAYLSIVVVIGVVSSVV 100

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
                   K++ + Q  + +P++++ +    +   LW +      +   +    L     
Sbjct: 101 APQLVTCVKLLFSGQSKV-IPQFINWLENESFLKSLWQQIDLSKINWTKVQSYLLNGASG 159

Query: 147 DF--IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            F  +   AS+         ++I F I  L F       +++Q   L     P    +I 
Sbjct: 160 TFSTVMSTASKVVSALTTTVVAIFFSIYLLLFK----DRLARQFKLLLTTYLPGQVARIL 215

Query: 205 RI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           R+     +   S  +G    A+  G        +  +P    +G + A+ A++P    + 
Sbjct: 216 RVLTVFDQSFSSYIVGQVKDAVVLGCSCTVLMLILQLPYAPMVGAVMAVTALVPIIGALM 275

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
             +V I ++   +   A    +         ++   P +VG  I LP +  F  ++ G  
Sbjct: 276 GASVGIIVIFAVSPVKALIFLVMILALQEFDNRVTYPLIVGKSIGLPSVWVFVAVMVGGG 335

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             G+LG+     L A    + K  +   + N
Sbjct: 336 VSGILGMMFTVPLFAAFYQLLKTDVAKRQLN 366


>gi|254476937|ref|ZP_05090323.1| conserved domain protein, putative [Ruegeria sp. R11]
 gi|214031180|gb|EEB72015.1| conserved domain protein, putative [Ruegeria sp. R11]
          Length = 375

 Score = 67.9 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 52/317 (16%), Positives = 104/317 (32%), Gaps = 11/317 (3%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           + F  PV+ A ++             K    +   A I    V          L     +
Sbjct: 48  RAFAVPVILAFLLSLVFSGPCRWLRRKGIPEAVTAAAIVLSLV--------AGLTASTAI 99

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
                   +  A +    V R L DI G   A     + +    +             I+
Sbjct: 100 LAIPASEWIEDAPRVAQQVERKLKDISGVAAAVAEADRRIEEATTGAADGAEDPVEVVIE 159

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA-YWKKISRI 206
                 +   +         +F++I  FF    G    ++L S+           +I+  
Sbjct: 160 DTSGPLTTVAVGAPMIVAQTLFVLILTFFMLASGNLFYERLVSVLPRFADKKRAIQIAYD 219

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           V + +    L +T +  G G+++G +  L G+P+ +A G++   M  +P    +    VS
Sbjct: 220 VEREVSRYLLAITCVNAGLGVIVGVSLGLLGMPNPLAFGLLAFGMNFVPFVGAVIGVIVS 279

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIV--DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             + +         L + G      V   + + P+LVG  + L  +     +        
Sbjct: 280 FGVALVSLPTLFDALTVAGIYLALTVIEGQVVTPWLVGRHLSLNTVVILISVAFWAWLWS 339

Query: 325 LLGLFIGPVLMALIAVI 341
           ++G+ +   L+    V+
Sbjct: 340 VMGMIMAVPLLVTFRVL 356


>gi|302671010|ref|YP_003830970.1| hypothetical protein bpr_I1651 [Butyrivibrio proteoclasticus B316]
 gi|302395483|gb|ADL34388.1| hypothetical protein bpr_I1651 [Butyrivibrio proteoclasticus B316]
          Length = 460

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 82/283 (28%), Gaps = 2/283 (0%)

Query: 60  TFLAVIATVSVMCLFIVP-LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
           T    +     +   I+P L+         +   +  V   +   +     L  I     
Sbjct: 105 TMAIFLFMAYSLFRVIIPQLVSSIREIANNLPIYIKNVDDYSNLFLANNPELQQI-IDSQ 163

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
               +    S+     +          + +  R       I  D  +  I  I  L    
Sbjct: 164 LDNYYETLSSYLTQKLLPLLPGNVNTIVRYASRSFISGIKIVFDLVVGFIVAIYVLNSKE 223

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           R      +   ++ +           R V    +    G  + ++  G++      +  +
Sbjct: 224 RFTTRGKKMAYAVLKEDAANELISGFRFVNYTFQGFIGGKLVDSLIIGVICYIGCMMLKI 283

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  V + VI  +  +IP   P     +   +L+  +   A    ++  +        L P
Sbjct: 284 PYPVLISVIVGVTNIIPFFGPYIGGGMGALILVLISPVKALVFLIFVIVLQQFDGNILGP 343

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            ++G    L      F +       G++G  +G  + A+   +
Sbjct: 344 TILGNSTGLSSFWVIFAITLFGGLWGVVGWLVGVPIFAVFYAL 386


>gi|168698049|ref|ZP_02730326.1| hypothetical protein GobsU_00895 [Gemmata obscuriglobus UQM 2246]
          Length = 366

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 89/265 (33%), Gaps = 5/265 (1%)

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           L +          L +  V        +P    ++P  +  S  + +     + +     
Sbjct: 85  LVVIAAVAALTTGLYALGVSVAGQFGQLPE---EVPRAIDRSRTYLERHEWGRWVLDQVT 141

Query: 139 TFLK-TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              +  +G   +    + F         +++ +     +   D  +      +L      
Sbjct: 142 PLGQLPSGGSRLAGRLASFFSTTFGALGNLVLLTFLALYLAADPHTYLGGAVALIPPRHR 201

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
              +++ R +   +R   LG  +     G+++ +  W  GVP  V LG++ A++  +P  
Sbjct: 202 RRAEQVLRAIGFHLRRWLLGRLVAMTTVGVIVSAGLWGVGVPQFVVLGLLAAVLTAVPFI 261

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            PI+     + L +               +   + +  + P +     +LP       + 
Sbjct: 262 GPIAAAVPGVALALAHGPPAGLGAVGVYVLAQAVENYVVTPLVQKRAAQLPPALALAAVA 321

Query: 318 GGVRTMGLLGLFIG-PVLMALIAVI 341
                 G+LGL    P+L+A++  +
Sbjct: 322 LAGVLFGVLGLIAASPLLVAVLVAV 346


>gi|260101818|ref|ZP_05752055.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|260084372|gb|EEW68492.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|328468753|gb|EGF39727.1| putative permease [Lactobacillus helveticus MTCC 5463]
          Length = 344

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 58/339 (17%), Positives = 115/339 (33%), Gaps = 17/339 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            N   + R+++  II+  LY ++     +L   I  +    +         +  T   V+
Sbjct: 9   KNNIPLRRFVVFLIIVAFLYEMRAMMNTILLTFIFTYVIVHLIHLVQRYVPKMPTGAIVV 68

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T  ++      L  L+++  + M  LV ++    +  +             +A+   +K
Sbjct: 69  VTYLII------LALLYFFITVYMPMLVGQISKMVKSVMAFYESDESSRLLSYATHYISK 122

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +    Q+           + + F    A+  G + +   +S+I          +     S
Sbjct: 123 NEIITQA----------KHAMTFAFHTATSIGTLTITTFMSLILSFFYTIELKKMREFSS 172

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             + S          +   +               IAI    +      +  +P  VALG
Sbjct: 173 LFVKSGYLKWLFEDIRYFGKKFTNTFGVVLEAQFFIAICNTALTMIGLAIMKMPQIVALG 232

Query: 246 VITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           ++  I++++P  G  IS   +SI     G I  A  +F+   I   I    L P  +   
Sbjct: 233 LMVFILSLVPVAGVIISLIPLSIVGYSVGGIRYAIYIFVMIMIIHAIEAYVLNPKFMASK 292

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            +LP   TF  L+      G  GL +G  +   +  +  
Sbjct: 293 TELPIFYTFLVLLVAEHFWGTWGLIVGVPIFTFLLDVLN 331


>gi|302873320|ref|YP_003841953.1| hypothetical protein Clocel_0411 [Clostridium cellulovorans 743B]
 gi|307688512|ref|ZP_07630958.1| hypothetical protein Ccel74_10158 [Clostridium cellulovorans 743B]
 gi|302576177|gb|ADL50189.1| protein of unknown function UPF0118 [Clostridium cellulovorans
           743B]
          Length = 337

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 63/350 (18%), Positives = 121/350 (34%), Gaps = 21/350 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +     I +  I+ +I+  +Y LK     +L   I  F    I+    +K        
Sbjct: 5   ENITKSSIIKKMAIIGVIIAIIYMLKSMINLLLLTFIFTFIFSQIHKFVYTKVNSWIKLS 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           + + T+SV  + +  ++ +           +  +    Q  I +   LS         ++
Sbjct: 65  SKMVTISVYVIILAIIVIMS----------IRYIPQVTQQLIDIINLLSTFNLEQVHDKV 114

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                +  + ++I           D I   A++ G     + ++++   +  FFF  +  
Sbjct: 115 GDTIFNIIKEIQIQD---YLKQSEDKIIELATQIGT----FSMNVVIAFLLSFFFILEKE 167

Query: 183 SIS---QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            I    Q+L+         Y K    I             +IA    ++   A  + G P
Sbjct: 168 EIIAFGQRLEGSKLAFAYEYCKYCGGIFLNSFGKVIQLQIVIAFINSVLSVIALAIMGFP 227

Query: 240 SHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             + +G +  I+ +IP    I     +SI     G +     + +  A+   +    L P
Sbjct: 228 QALGIGTMIFILGLIPVAGVIVSLVPLSIIAFNIGGMVKIIEVIIMIAVLHALESYVLNP 287

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            L+    KLP    F  L+ G   MG+ GL +G  L      I+   +  
Sbjct: 288 KLMSMKTKLPVFMVFVILLVGEHLMGVWGLLLGIPLFIFFLDIFDIKVEG 337


>gi|314933212|ref|ZP_07840577.1| putative membrane protein [Staphylococcus caprae C87]
 gi|313653362|gb|EFS17119.1| putative membrane protein [Staphylococcus caprae C87]
          Length = 363

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/331 (12%), Positives = 115/331 (34%), Gaps = 15/331 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS-VMCLFIVPLLFLFYYGMLEM 89
           F P L +  + +   P  +           + +++     ++ +  + + F+    +  +
Sbjct: 41  FLPFLISGFLFYICLPFQNILER--WGFPRWASILTIFIGLIAIIAIVVSFIAPIIISNI 98

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             L+ +     +    +  +   +       +  T  ++          T + +N + +I
Sbjct: 99  NNLIKQTPALQKEAEHIINF--SLKQMDKLPDDVTHRINKAVKSVGDGATSVLSNSVTYI 156

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
             F S            +I +   L +  +D       +    +     +   + + +  
Sbjct: 157 TSFIST--------VFLLIMVPFFLIYMLKDHEKFIPAIGKFFKGERKVFIVDLLKDLNF 208

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIY 268
            ++S   G   +++  G++L   Y + G+P    L +   +  +IP  G  +SFT  +I 
Sbjct: 209 TLKSYIQGQVTVSVILGIILYIGYSIIGLPYTPLLVLFAGVANLIPFLGPWLSFTPAAIL 268

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
            +I+G       + +   I   +    + P ++G  + +  L     ++      G   +
Sbjct: 269 GIIEG-PTTFIWVCVVTLIAQQLEGNVITPNVMGKSLSIHPLTIIVVILAAGDLGGFTLI 327

Query: 329 FIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            I   L A+I  +        +   +K +S+
Sbjct: 328 LIAVPLYAVIKTLVSNIFKYRQRIIDKANSD 358


>gi|285019744|ref|YP_003377455.1| hypothetical protein XALc_2984 [Xanthomonas albilineans GPE PC73]
 gi|283474962|emb|CBA17461.1| hypothetical protein XALc_2984 [Xanthomonas albilineans]
          Length = 353

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 53/350 (15%), Positives = 110/350 (31%), Gaps = 20/350 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++  M +  + +  + L      V  A+++G     + S    +          +  +S
Sbjct: 18  RVLVVMALGGLALLAWQLSELLLIVFGAIVVGVLLHGLASVLCKRLPVPEWAALALVILS 77

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++      +L        ++    + +  A         WL   P G     +  +    
Sbjct: 78  LLLALSAIVLLFGSEVAAQIDAFRTTLPAAWNK---FHAWLQSGPLGPQIDRIPEQL--- 131

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                         NG   +   A    M       + + M +   +         Q L 
Sbjct: 132 -------------RNGASTVAAHAGAIVMSAGGGVTNAVLMTVGGIYLAAQPRLYRQGLL 178

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L                 + +R+   G  +     G + G   WL  VP  + +G++TA
Sbjct: 179 RLLPRDQRGVADAALGASGQALRAWLAGQLLAMAVIGTLTGVGLWLLHVPVALGIGLLTA 238

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++  IP   PI+    +I L    +   A    L   +   +    L+P +    + LP 
Sbjct: 239 LLDFIPIVGPIAAAVPAILLGFTVSPQVALGALLLFVVLQQLEGHLLQPLIQARAVDLPP 298

Query: 310 LPTFFGLVGGVRTMGLLGLFI-GPVLMALIAVIWKESIMAIKENKEKISS 358
               F L G    +G +G+ +  P+ +    +I +  +     + E+  S
Sbjct: 299 ALLLFSLFGIGMLLGPMGVVLAAPLTVVTFVLIKRLYVQHALGDAEEAES 348


>gi|205375598|ref|ZP_03228385.1| hypothetical protein Bcoam_21753 [Bacillus coahuilensis m4-4]
          Length = 353

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 62/320 (19%), Positives = 118/320 (36%), Gaps = 8/320 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           SLY L     P++SA I      P       +         +I  V  +    + L F+ 
Sbjct: 23  SLYIL-PISIPLISAFITALFLDPAVRVLRKRFNIKRKLSVLIVFVLFLLFSGLSLYFIT 81

Query: 83  YYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGG--MWASELWTKHLSHPQSLKILSET 139
              + E  +   ++    NQ       +  D+        +E+  +      +     ++
Sbjct: 82  TKVIGEAIQFAEEIPTYINQISDKWEIYEKDLLSASEDLPNEVVEQIQDEVGNFFNSVKS 141

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            L  + ++      S F     +Y ++I+  +IALF F  D   I   +           
Sbjct: 142 GLTNDYVNL--NKISSFIGGIPNYLVNILVYLIALFLFMIDLPKIRTTIYKHLTEKTADK 199

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GA 258
              ++  +  V+        ++++   +            + + + V+  I+  IP  G+
Sbjct: 200 VNFMTSRLSYVVLGFLKAQFLVSVIIFIATLLGLLWIAPEAALVMSVVIWIVDFIPLIGS 259

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            +       Y  I GNI   T L +   + L I+ +T+ P ++G  I L  L T   +  
Sbjct: 260 IVIMAPWFTYHFITGNIGLGTELAILATVLL-IIRRTVEPKVMGRHIGLSPLATLIAMYL 318

Query: 319 GVRTMGLLGLFIGPVLMALI 338
           G++  GLLG FIGP ++ L 
Sbjct: 319 GLKLFGLLGFFIGPFILILF 338


>gi|218768223|ref|YP_002342735.1| putative integral membrane protein [Neisseria meningitidis Z2491]
 gi|121052231|emb|CAM08554.1| putative integral membrane protein [Neisseria meningitidis Z2491]
          Length = 356

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 126/336 (37%), Gaps = 10/336 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
              ++  ++ L     P   A ++ +   P+      KK  +    ++   V  + L + 
Sbjct: 19  FAALVWLVFALGDTLTPFAVAAVLAYVLDPLVEWL-QKKGLNRASASMSVMVFSLILLLA 77

Query: 77  PLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            LL +    + +   L S++  L       +  WL +  GG      + +         +
Sbjct: 78  LLLIIVPMLVGQFNNLASRLPQLIGFMQNTLLPWLKNTIGG------YVEIDQASIIAWL 131

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            + T   +N +        R G   +    +++ + + L++F  D    S  +  L    
Sbjct: 132 QAHTGELSNALKAWFPVLMRQGGNIVSSIGNLLLLPLLLYYFLLDWQRWSCGIAKLVPRR 191

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +P
Sbjct: 192 FAGAYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLVLVGLDSGFAIGMVAGILVFVP 251

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGGPIKLPFLPTF 313
                +   ++    +         L +W    +  F+    + P +VG  I L      
Sbjct: 252 YLGAFTGLLLATVAALLQFGSWNGILAVWAVFAVGQFLESFFITPKIVGDRIGLSPFWVI 311

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           F L+   + MG +G+  G  L A+  V+ +E +   
Sbjct: 312 FSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVQKY 347


>gi|119491388|ref|ZP_01623407.1| hypothetical protein L8106_14015 [Lyngbya sp. PCC 8106]
 gi|119453383|gb|EAW34546.1| hypothetical protein L8106_14015 [Lyngbya sp. PCC 8106]
          Length = 383

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/334 (12%), Positives = 108/334 (32%), Gaps = 8/334 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           +  + + L+ L+  +     + +++I+      +      +   +     +IA   V+  
Sbjct: 9   FFCLILALLILWQFRQIVLLIFTSVILAIALNSLVRWL-QRFRLNRNLAVIIALSLVVLF 67

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             +    +    + + ++L+          I   RW+ ++         + + L      
Sbjct: 68  GTLFFSLVMPPFLTQFQQLIELAPRGFNQFI---RWVDNLLENPPI--WFPQQLEFRVPT 122

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                  +     + +  F   F    L   L ++ +I+    F  +  +       L  
Sbjct: 123 IPEIAQQVGPLAQNVLGNF-FAFFSNSLTTLLQLLLVIVLTLMFLSNPVAYRTVFVRLFP 181

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
             +      I      V+     G+ I +I    +      +  +P   A  ++  +   
Sbjct: 182 SFYRRRADAILCGCETVLLQWMAGIVINSIFIASLSAIGLLILDIPFVFAHALLAGVFNF 241

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P +     + + +    + A  + +   +   +      P ++   + L    T 
Sbjct: 242 IPNIGPAASVVFPVSVALLDTPWKALTVIILYIVIQNLESYWFSPMIMQKQVSLLPAATL 301

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              +   R  G LGL +  + +A+++ IW E  +
Sbjct: 302 TAQIFFARFFGFLGLILA-LPLAVVSKIWIEEAI 334


>gi|294620005|ref|ZP_06699370.1| transport protein [Enterococcus faecium E1679]
 gi|294622423|ref|ZP_06701447.1| transport protein [Enterococcus faecium U0317]
 gi|291593727|gb|EFF25236.1| transport protein [Enterococcus faecium E1679]
 gi|291598067|gb|EFF29175.1| transport protein [Enterococcus faecium U0317]
          Length = 345

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 54/356 (15%), Positives = 119/356 (33%), Gaps = 23/356 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  L  + I R  ++  ++  L+ ++     +L   I  +    +           +  L
Sbjct: 5   QRFLANEKIRRLTVLLFVVFVLFLVRSMITTILLTFIFTYLMIHLVQIIQRFVRIPTGVL 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A++    ++ L  +         + +  +++  V+   +H           P   +    
Sbjct: 65  AIMIYTLIVYLIYLAFTKYIPMLIHQTFDMIQSVINFYEHQPKDAD-----PVLQYIHTY 119

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             ++    Q            NG      +    G + + + +S I      FFF  +  
Sbjct: 120 IERNDFFEQL----------QNGASIALGYLQDIGKMAVAFAMSFILS----FFFMIEKK 165

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVP 239
                     +  F  +++ I     K + +         ++A+   L+   A  + G  
Sbjct: 166 KTIVFSRLFLKSEFSWFFQDIYYFADKFVNTFGLVLEAQFVVALLNTLLTTIALAVFGFH 225

Query: 240 SHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             ++L ++  I+++IP    I     +S     +G I +   + +   I   I    L P
Sbjct: 226 QLLSLAIMIFILSLIPVAGVIISCIPLSFIAYSQGGIRDVVYILITILIVHLIESYVLNP 285

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            L+    +LP   TF  L+   R  G+ GL +G  +      + K   +     KE
Sbjct: 286 KLMSSKTELPIFYTFVVLLVSERFFGVWGLIVGIPIFTFFLDVLKVKKIPNHLPKE 341


>gi|221134975|ref|ZP_03561278.1| hypothetical protein GHTCC_08591 [Glaciecola sp. HTCC2999]
          Length = 357

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/325 (13%), Positives = 104/325 (32%), Gaps = 22/325 (6%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             + ++    + ++L  +        P L ++ I     P+ +     K         I+
Sbjct: 7   TAKVMVITAAVIVVLAGIKAASAIMVPFLLSIFIAIACSPLINHASRYKIPR-----WIS 61

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
              V+ L IV    L       + E    +                    +     W   
Sbjct: 62  VTLVILLIIVFGFMLAGLVGQSLGEFRQNLPNYQSQ--------------LSVEFAWVIE 107

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                ++ +    FL           A+ F         ++  +I+ + F   +  S+ +
Sbjct: 108 QLAKVNVIVDKNLFLSYFDPAVAMSVATNFLSGMGGVLSNVFLIILTVIFMLFEAESMPR 167

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           ++        P    +      K +       +++++G G+ +G   ++  VP  +   V
Sbjct: 168 RIHVALRD--PGMKMQHIDRFLKSVNDYLAIKSLVSLGTGVFIGVWLFVLDVPHFMLWAV 225

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +  ++  IP  G+ I+     +   +   +  A    L   I   ++   + P  +G  +
Sbjct: 226 LAFLLNFIPNIGSIIAAVPAVLIAFVDQGLATAGLAGLGFIIVNTVMGNMIEPRFMGRGL 285

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFI 330
            L  L  F  L+     +G +G+ +
Sbjct: 286 GLSTLVVFLSLIFWGWLLGSVGMLL 310


>gi|56479467|ref|YP_161056.1| hypothetical protein ebA7105 [Aromatoleum aromaticum EbN1]
 gi|56315510|emb|CAI10155.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 378

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/326 (12%), Positives = 105/326 (32%), Gaps = 13/326 (3%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
              AP + A +  +   P  +  + ++            ++V+ + +     L    ++ 
Sbjct: 43  PILAPFVIAAVFAYICDPAVNWMVRRRIPRP--------LAVLLVILGLGAILLLLLLIL 94

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF--LKTNGI 146
              +  + +        +   L+                     ++           + +
Sbjct: 95  APMIYREAIALVGRLPDLIELLNSRVAPRLMERFGIDLQLDAAFVRTWITENWSTAQDLV 154

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             I     + G   +     ++ + + +F+  +D   +   + ++          +I   
Sbjct: 155 PVILGHLRQGGSALVGLAALVLLIPVVMFYLLQDWPHLVTNVQAIIPRPMLPRTLRIFHD 214

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGAPISFTA 264
           +  V+     G   + +   +      WLAG+   + +GVIT ++  IP  G       A
Sbjct: 215 IDSVLSQFLRGQLSVMLLLAVFYSVGLWLAGLKFALPVGVITGLLVFIPYVGFGGGLILA 274

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           +   LL          + +   +   I    L P+LVG  I L  +   F L+   +  G
Sbjct: 275 ILTALLQADGWSPLIGVAIVYGLGQAIESFVLTPYLVGERIGLHPVAVIFALMAFGQLFG 334

Query: 325 LLGLFIG-PVLMALIAVIWKESIMAI 349
            +G+ +  P   A++  + +     +
Sbjct: 335 FVGVLVALPASAAILVGLRELRAAWL 360


>gi|152975277|ref|YP_001374794.1| hypothetical protein Bcer98_1483 [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152024029|gb|ABS21799.1| protein of unknown function UPF0118 [Bacillus cytotoxicus NVH
           391-98]
          Length = 333

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 59/341 (17%), Positives = 121/341 (35%), Gaps = 25/341 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +G  R+++  I+   LY LK     +L   I+ F          +K + +   +    
Sbjct: 9   QSRGFQRFIVFVILAFLLYGLKSMINLILITFILTFLMDRFQRFISNKLKINRKVVIACL 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
              ++   +  L        +++ +L+ +  L  QH           P      +     
Sbjct: 69  YSVLVTFIVTTLYKYLPVLTIQISQLIYQFKLFFQH-----------PPDNEIIKYVLST 117

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           ++  +  K + +      G+D I +  +  G + L   LS+I  +  L     +   I  
Sbjct: 118 INQMEVSKYIEQ------GVDVIYQSVANIGKVSLQILLSLILSLFFL----LEKERIIT 167

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 E     ++++I+    +  RS         +IAI   ++   A    G P  + 
Sbjct: 168 FTSKFKESKLKIFYEEIAYFSQRFARSFGKVIEAQFLIAIVNCILTVIALVFLGFPQLLV 227

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L ++  ++ +IP  G  IS   + I     G I     + +   +   +    L P  + 
Sbjct: 228 LAIMIFLLGLIPVAGVIISLFPLCIIAYNIGGIMYVVYILIVITVIHALESYFLNPKFMS 287

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               LP   TF  L+     +G+ GL IG  +   +  +++
Sbjct: 288 AKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVFE 328


>gi|309378483|emb|CBX22908.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 356

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 58/337 (17%), Positives = 120/337 (35%), Gaps = 12/337 (3%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
              ++  ++ L     P   A ++ +   P+      KK  +    ++   V  + L   
Sbjct: 19  FAALVWLIFALGDALTPFAVAAVLAYVLDPLVDWL-QKKGFNRAVASMTVMVFALLLLAA 77

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            LL +    + +   +VS++    Q    +   L  +      + +     S    L+  
Sbjct: 78  LLLIIVPMLVGQFNSMVSRLP---QLAGFMQNTLLPLLKDTVGNYVEIDQASVIAWLQAH 134

Query: 137 SETFLKTNGIDF--IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           +     T    F  + R +S       +  L  + +   L     D    S  +  L   
Sbjct: 135 TGELSNTLKAWFPVLMRQSSNIVSSIGNLMLLPLLLYYFL----LDWQRWSCGIGKLVPR 190

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +
Sbjct: 191 RFADTYTRITGHLNEVLGEFLRGQLLVMLIMGLVYGLGLMLVGLDSGFAIGMVAGILVFV 250

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGGPIKLPFLPT 312
           P     +   ++    +         L +W    +  F+    + P +VG  I L     
Sbjct: 251 PYLGAFTGLLLATVAALLQFASWNGILAVWAVFAVGQFLESFFITPKIVGDRIGLSPFWV 310

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            F L+   + MG +G+  G  L A+  V+ +E +   
Sbjct: 311 IFSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVQKY 347


>gi|254426867|ref|ZP_05040574.1| conserved domain protein, putative [Alcanivorax sp. DG881]
 gi|196193036|gb|EDX87995.1| conserved domain protein, putative [Alcanivorax sp. DG881]
          Length = 363

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 114/343 (33%), Gaps = 13/343 (3%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           I +++ F  G  APV +A+++ +    +  +   +          +     M L I  L+
Sbjct: 28  IGLTIAFFGGMLAPVFTAMVVAYLMQGLVGALERR-GVKRMLAVGLVFTLFMGLLIATLV 86

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            L      ++  LV   +        +  WL  +P          +  S    ++     
Sbjct: 87  VLLPMVWRQLVLLVQDQLPHVLKNGEI--WLRGLPAHYPEIISMEQVNSIVAVIQREVAE 144

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
             +      +           ++  + ++ + + +FFF +D  ++   +           
Sbjct: 145 AGQGVLTLSLASI-----PNLVEIMVFLVLVPLLVFFFLKDRETLVNWMLGFLPR-KRRI 198

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGA 258
              + + +   I +   G  I  +  G     A+ L  +   V L V+  +  ++P  GA
Sbjct: 199 LSHVWQEMDGQIANYVRGKAIEILLVGGATFIAFVLLDMNYAVLLAVLVGLSVVVPYIGA 258

Query: 259 PISFTAVSIYLLIKGNIFN--ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
            +    V+    ++       A  + ++G I  FI    L P L    + L  +     +
Sbjct: 259 TVVTLPVAAVAYVQFGWGGDFALVMIVYG-IIQFIDGNILVPLLFSEAVNLHPVAIITAI 317

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +      GL G+F    L  LI  +          +  K+ + 
Sbjct: 318 LLFGGLWGLWGVFFAIPLATLIKAVINAWPRQADYSPGKLEAQ 360


>gi|227515057|ref|ZP_03945106.1| permease [Lactobacillus fermentum ATCC 14931]
 gi|227086579|gb|EEI21891.1| permease [Lactobacillus fermentum ATCC 14931]
          Length = 366

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 54/331 (16%), Positives = 118/331 (35%), Gaps = 15/331 (4%)

Query: 32  APVLSALIIGFTSWPIYSSFISK-----KEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
            P+L   +I +    +   +        K + +   A +  + +  L IV ++ +    +
Sbjct: 41  MPLLIGCVIAYIVNLLMVRYEGLYHRVFKGQRAQRFARVTALCLAYLSIVVVIGVVSSVV 100

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
                   K++ + Q  + +P++++ +    +   LW +      +   +    L     
Sbjct: 101 APQLVACVKLLFSGQSKV-IPQFINWLENESFLKSLWQQIDLSKINWTKVQSYLLNGASG 159

Query: 147 DF--IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            F  +   AS+         ++I F I  L F       +++Q   L     P    +I 
Sbjct: 160 TFSTVMSTASKMVSALTTTVVAIFFSIYLLLFK----DRLARQFKLLLTTYLPGQVARIL 215

Query: 205 RI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           R+     +   S  +G    A+  G        +  +P    +G + A+ A++P    + 
Sbjct: 216 RVLTVFDQSFSSYIVGQVKDAVVLGCSCTVLMLILQLPYAPMVGAVMAVTALVPIIGALM 275

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
             +V I ++   +   A    +         ++   P +VG  I LP +  F  ++ G  
Sbjct: 276 GASVGIIVIFAVSPVKALIFLVMILALQEFDNRVTYPLIVGKSIGLPSVWVFVAVMVGGG 335

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             G+LG+     L A    + K  +   + N
Sbjct: 336 VSGILGMMFTVPLFAAFYQLLKTDVAKRQLN 366


>gi|213421990|ref|ZP_03355056.1| hypothetical protein Salmonentericaenterica_31373 [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 215

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 69/204 (33%), Gaps = 3/204 (1%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           N  D + +++    +  L   + ++ + + +FF  +D   +   +  +          ++
Sbjct: 3   NMGDSVVKYSLASLVGLLTLAVYLVLVPLMVFFLVKDKEQMLNAVRRVLPRNRGLAG-QV 61

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISF 262
              + + I +   G  +  +  G+     + L G+   + L V+     +IP  GA +  
Sbjct: 62  WNEMNQQITNYIRGKVLEMVVVGVATWLGFLLFGLNYSLLLAVLVGFSVLIPYIGAFVVT 121

Query: 263 TAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
             V  + L   G        F    I   +    L P L    + L  L     +V    
Sbjct: 122 IPVVGVALFQFGLGTEFWSCFAVYLIIQALDGNLLVPVLFSEAVNLHPLVIILSVVIFGG 181

Query: 322 TMGLLGLFIGPVLMALIAVIWKES 345
             G  G+F    L  LI  +    
Sbjct: 182 LWGFWGVFFAIPLATLIKAVVHAW 205


>gi|113476022|ref|YP_722083.1| hypothetical protein Tery_2392 [Trichodesmium erythraeum IMS101]
 gi|110167070|gb|ABG51610.1| protein of unknown function UPF0118 [Trichodesmium erythraeum
           IMS101]
          Length = 349

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/318 (14%), Positives = 99/318 (31%), Gaps = 11/318 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
              +   +  L+ ++     V +A++I  T   +     S  +   +   +I+    + L
Sbjct: 9   IFTILTSIYILWQIRQLLLLVFTAMVIATTLNKLSRKLQS-LKIKRSLAVLISVSLFILL 67

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +     +      + ++L++ V         +  WL+ +   +               +
Sbjct: 68  IVTFFWVIVPPLAEQFQQLITIVPQGINK---LNDWLNILRDQLPNQLKEQLPDIDINEI 124

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
               +  L       +   A  F        LS++   +       D  S  Q +  L  
Sbjct: 125 IPQLQPILNQ-----LINNAGEFVGNTFGIFLSLLLTFVLSMMMLVDPISYRQGMIKLFP 179

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
             +      I       +    L   +      L+      +  +P   A  V+  ++ +
Sbjct: 180 SFYRQRVNLILDNCEIALGGWVLHSLLKMSVVTLLSFIGLSILKIPLSSAQAVLAGVLTL 239

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP  G  IS     +  L+   + +A  L ++  +   I    L P+ +   + L    T
Sbjct: 240 IPHIGLIISIIPPMVIALLYSPLKSALVLLIY-ILIQQIEHNILNPYFIVKKVSLLPAIT 298

Query: 313 FFGLVGGVRTMGLLGLFI 330
               V      G+LGL +
Sbjct: 299 LISQVFFAHFFGVLGLVL 316


>gi|308389313|gb|ADO31633.1| putative transporter [Neisseria meningitidis alpha710]
          Length = 356

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 126/336 (37%), Gaps = 10/336 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
              ++  ++ L     P   A ++ +   P+      KK  +    ++   V  + L + 
Sbjct: 19  FAALVWLVFALGDTLTPFAVAAVLAYVLDPLVEWL-QKKGLNRASASMFVMVFSLILLLA 77

Query: 77  PLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            LL +    + +   L S++  L       +  WL +  GG      + +         +
Sbjct: 78  LLLIIVPMLVGQFNNLASRLPQLIGFMQNTLLPWLKNTIGG------YVEIDQASIIAWL 131

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            + T   +N +        R G   +    +++ + + L++F  D    S  +  L    
Sbjct: 132 QAHTGELSNALKAWFPVLMRQGGNIVSSIGNLLLLPLLLYYFLLDWQRWSCGIAKLVPRR 191

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +P
Sbjct: 192 FAGAYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLVLVGLDSGFAIGMLAGILVFVP 251

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGGPIKLPFLPTF 313
                +   ++    +         L +W    +  F+    + P +VG  I L      
Sbjct: 252 YLGAFTGLLLATVAALLQFGSWNGILSVWAVFAVGQFLESFFITPKIVGDRIGLSPFWVI 311

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           F L+   + MG +G+  G  L A+  V+ +E +   
Sbjct: 312 FSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVQKY 347


>gi|206580879|ref|YP_002238720.1| inner membrane protein YdgG [Klebsiella pneumoniae 342]
 gi|206569937|gb|ACI11713.1| inner membrane protein YdgG [Klebsiella pneumoniae 342]
          Length = 374

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/328 (14%), Positives = 106/328 (32%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL +     P+    +  +        
Sbjct: 37  TLNGLKMVIMLGMLVIILTGIRFAADIIVPFILALFLAVIINPLVQLLVRCRVPR-VLAI 95

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +    ++ L IV L  L        + L        +    +  WL  +          
Sbjct: 96  SMLIGLIVMLAIVLLASLGTSLNELARTLPQYRNYLYEPMQTIAPWLQRM---------- 145

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                      +      K    + +    +       +   SI  +++ + F   +   
Sbjct: 146 --------GFTVSVVELNKYIDPNAVMTLVTSLLTQLSNAMSSIFLLLLTVVFMLLEVPQ 197

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +L  L     P       +     +    +  T I++  GLV+     L  V     
Sbjct: 198 LPAKLQQLMSR--PVEGMGAIQRAIDSVSHYLVLKTAISLVTGLVVWGMLVLLDVRFAFM 255

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++     + +L+ G ++ A  +     I   +    L P ++G
Sbjct: 256 WGLLAFALNYIPNIGSVLAAIPPILQVLVFGGLYEALVVLAGYLIVNLVFGNILEPRVMG 315

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 316 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 343


>gi|88809887|ref|ZP_01125393.1| hypothetical protein WH7805_10938 [Synechococcus sp. WH 7805]
 gi|88786271|gb|EAR17432.1| hypothetical protein WH7805_10938 [Synechococcus sp. WH 7805]
          Length = 359

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 101/296 (34%), Gaps = 13/296 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  F    L+A +I F           +         V+ T+  +   +   + L    +
Sbjct: 30  LAPFPGLFLTAALIAFLLDIPCVWLTGR-GLPRWMAIVMVTLVTISALVFAGITLVPLLI 88

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++ +L++ +            W++ +     A  L ++       L   +         
Sbjct: 89  DQLGQLINALPGLLSE---AEGWITSLQSLADARGLPSEFGDLSSDLLTRAGRVASQISQ 145

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +    +  G       ++ + +++   FF   G SI+  L       +      ++  
Sbjct: 146 RLLGILGATLGT-----TINTVIVLVLAVFFLLGGRSIAAGLARWLPTDWREL---VTST 197

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           + +  R  F G  ++A+   +     + +  +P  V   V+     +IP  + ++  AVS
Sbjct: 198 LSRTFRGYFAGQVLLALILAVGQIVVFTVLKIPYGVLFAVLIGFTTLIPYASALTIIAVS 257

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             L  + +      + +   +   +VD+ ++P L+G  + L        L  G + 
Sbjct: 258 GLLAFQ-DPKTGLEILVAAILVGQLVDQVIQPRLMGSIVGLQPAWLLIALPIGAKA 312


>gi|331087230|ref|ZP_08336300.1| hypothetical protein HMPREF0987_02603 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408916|gb|EGG88377.1| hypothetical protein HMPREF0987_02603 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 357

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/314 (13%), Positives = 99/314 (31%), Gaps = 6/314 (1%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           + + + ++     P   A ++ +   P+  +  +  + +   +A    + ++ +    L 
Sbjct: 28  MYIGIKYILPLVLPFFCAFLVAYLLRPLVRNIHAHTKLNQGAVAGGLLLIILGVVGTALW 87

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
           FL    + +    +                      G++  E           +  ++E 
Sbjct: 88  FLGSTLVQQFCYFIEHYGFYAGKMELFLDQCCRSMSGVFGMEAGELESLFVTRMATIAEN 147

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
             +      +         I     + II  +  +     D   + ++      +    +
Sbjct: 148 IERQFVPKLMANSWGYVRTIIEVAGVGIIIFVSIIL-LVNDFDKLKEKASHSIGY---RH 203

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GA 258
           + KI + +  +         II      +    + L   P  + LGV+   +  +P  G 
Sbjct: 204 FVKILKRIFHMGGMFLKAQLIIMSVIAALCTVTFLLLKNPYALLLGVLIGFLDALPVLGT 263

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            +    ++I    +G    A        I     +  L P L+G  + LP +     +  
Sbjct: 264 AVVLYPLAIVQAFQGRFLFAAVYAGLSVICNLTRE-FLEPKLIGEHLGLPAIMVLVTVYV 322

Query: 319 GVRTMGLLGLFIGP 332
           G+R  G+ G+  GP
Sbjct: 323 GIRLFGVSGVITGP 336


>gi|229017259|ref|ZP_04174165.1| UPF0118 membrane protein [Bacillus cereus AH1273]
 gi|229023432|ref|ZP_04179933.1| UPF0118 membrane protein [Bacillus cereus AH1272]
 gi|228737880|gb|EEL88375.1| UPF0118 membrane protein [Bacillus cereus AH1272]
 gi|228744049|gb|EEL94145.1| UPF0118 membrane protein [Bacillus cereus AH1273]
          Length = 339

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 54/338 (15%), Positives = 117/338 (34%), Gaps = 19/338 (5%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +G  R++++ I+++ LY LK     +L   I+ F           K + +   +    
Sbjct: 9   RSRGFQRFLVLIILVLVLYGLKSMINLILITFILTFLMDRFQRFISKKLKVNRKVVIACL 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++   +  L        +++ +L+ +  L  QH  P    +  +   +   E+    
Sbjct: 69  YIILVTFIVTTLYKYLPVLTIQISQLIYQFKLFFQH-PPDNEMIRYVLSAINEMEVSKYI 127

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                 +        K +    +    S F ++  +  +S                    
Sbjct: 128 EQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKERIISFT-------------SKFKD 174

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
               +       + ++ +R   KVI + F    +IA+   ++   A  + G P  + L V
Sbjct: 175 SKLKIFYEEIAYFGERFARSFGKVIEAQF----LIAVVNCVLTVIALVILGFPQLLVLAV 230

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +  ++ +IP  G  IS   + I     G +     + ++  I   +    L P  +    
Sbjct: 231 MVFLLGLIPVAGVIISLFPLCIIAYNVGGVMYVVYILVFITIIHALESYFLNPKFMSAKT 290

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            LP   TF  L+     +G+ GL IG  +   +  +  
Sbjct: 291 NLPVFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLD 328


>gi|310779775|ref|YP_003968107.1| protein of unknown function UPF0118 [Ilyobacter polytropus DSM
           2926]
 gi|309749098|gb|ADO83759.1| protein of unknown function UPF0118 [Ilyobacter polytropus DSM
           2926]
          Length = 361

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/319 (13%), Positives = 110/319 (34%), Gaps = 13/319 (4%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +  P +  L+I     P+ + F +K +       V + +    + I   L +       +
Sbjct: 40  YIQPFIYGLVIAVILEPLITFFSNKFKFGRRLGIVTSLLVFSFILIGVFLIVIPPLSKSI 99

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI--- 146
            +L+       Q       W+  +         +    +  ++L     + +        
Sbjct: 100 GDLIESFP---QMKTKSQTWVIKVFEANKDRLAFLDEKTLKENLMSFIGSQVANTQSLVI 156

Query: 147 ---DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
              + I +       +F  + +++ F++   +F       I + L  + +          
Sbjct: 157 SFFEKIVKLTFSIVDVFFGFLIAVYFLLYKKYFI----GFIRKTLSIILKKEAVNETLDF 212

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
                ++  +   G +++++  G+V     +   VP  V +  +  +  MIP    I   
Sbjct: 213 LYESREIFLNYLAGRSLVSLFVGVVCFIIMFFTNVPYAVLISFVIGLGNMIPYIGSIIAG 272

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
            +S  L++         +++   +   I    L P ++G  + +        ++ G    
Sbjct: 273 IISTVLVLFTLPLKVIPMWIAILVAQQIDSWILGPKILGNSVGMNPFWVVTAVLIGGNVG 332

Query: 324 GLLGLFIGPVLMALIAVIW 342
           G +G+ IG  + A+I +I+
Sbjct: 333 GPIGMLIGVPVFAMIKIIY 351


>gi|256823487|ref|YP_003147450.1| hypothetical protein Kkor_2273 [Kangiella koreensis DSM 16069]
 gi|256797026|gb|ACV27682.1| protein of unknown function UPF0118 [Kangiella koreensis DSM 16069]
          Length = 348

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 51/335 (15%), Positives = 114/335 (34%), Gaps = 25/335 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS-----KKEE 57
           ET      ++     F+I+  L     F  PV+ +L +     P+Y  F        K++
Sbjct: 4   ETSRVTSALVAIAATFLIIAGLKAASVFIVPVILSLFVAIILGPLYFFFARVKLPIIKKD 63

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
              +LA+I  V +M LF   +  L    + +                 +PR+   +    
Sbjct: 64  MPDWLAIILVVVIMSLFFFVIGTLVGNSVEQFSN-------------NLPRYEMMLRAKF 110

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
               +W         +++      +      +   ++           +   +I+   F 
Sbjct: 111 EGLVVWL----AGHGVEVPQTPLAERFSPGVMMNLSASILNGLGGVLSNTFLIILTSIFL 166

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             +      ++      +       +  ++ K+ R   +    +++  G ++    WL G
Sbjct: 167 LMEASIFGDKMRRAFPDVESKAHLGLGEVISKIKRYASIKSV-VSLLTGAIISLWLWLIG 225

Query: 238 VPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKT 295
           V      G+I  +   IP  G+ I+     +   +  +  +   L   G + + F+V   
Sbjct: 226 VEYPFLWGLIAFMFNFIPNIGSIIAAIPAVLLAWLTSDTLSTPLLAAAGYLAVNFVVGNI 285

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           + P  +G  + L  L  F  L+     +G +G+ +
Sbjct: 286 IEPKFMGKGLGLSTLVVFLSLLFWGWVLGPVGMLL 320


>gi|254975639|ref|ZP_05272111.1| hypothetical protein CdifQC_10029 [Clostridium difficile QCD-66c26]
 gi|255093026|ref|ZP_05322504.1| hypothetical protein CdifC_10289 [Clostridium difficile CIP 107932]
 gi|255314768|ref|ZP_05356351.1| hypothetical protein CdifQCD-7_10487 [Clostridium difficile
           QCD-76w55]
 gi|260683651|ref|YP_003214936.1| hypothetical protein CD196_1915 [Clostridium difficile CD196]
 gi|260687311|ref|YP_003218445.1| hypothetical protein CDR20291_1958 [Clostridium difficile R20291]
 gi|306520501|ref|ZP_07406848.1| hypothetical protein CdifQ_11816 [Clostridium difficile QCD-32g58]
 gi|260209814|emb|CBA63667.1| putative membrane protein [Clostridium difficile CD196]
 gi|260213328|emb|CBE04908.1| putative membrane protein [Clostridium difficile R20291]
          Length = 361

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/318 (11%), Positives = 108/318 (33%), Gaps = 4/318 (1%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           FF+P L A+++     P+   F  K +        ++ + +  +    +  L       +
Sbjct: 42  FFSPFLLAILLALLLNPLVMLFEVKFKAHRLLAIFLSYIFIGFILAFAIRLLIPSIANTL 101

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             L++++ +   +         ++    +   L         +L   +  F+     +F+
Sbjct: 102 NRLINEMPMYTDYIDSFIE--KNMSNIDFLKTLIPHIQHSLDNLLKEASNFVGKIPKNFL 159

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
             +      +  +  +  I  I  ++   +      + L S           +  R    
Sbjct: 160 I-YTLSISSMLFNMTMGFILSIYIIYDKEKIALGFKRFLYSSTARNKADNIIEFFRTTHD 218

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAY-WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           +     LG  + ++  G++    + ++  + + + L  I  +  +IP   P       I 
Sbjct: 219 IFYDYLLGRILDSLIIGIIAFLGFQFVIRIENALFLASIIFLGNIIPYFGPFIGAIPPIA 278

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           + I  +      +  +  I   +    + P ++G  + +  +     ++ G    G +G+
Sbjct: 279 MTILYSPQKTIWVIAFLFILQQLDGNFIEPKVMGNQVGIGAIWVISAILVGQSLFGFIGV 338

Query: 329 FIGPVLMALIAVIWKESI 346
           F+   + A++     + I
Sbjct: 339 FLSVPIAAVVKTYVDKYI 356


>gi|223042949|ref|ZP_03612997.1| putative membrane protein [Staphylococcus capitis SK14]
 gi|222443803|gb|EEE49900.1| putative membrane protein [Staphylococcus capitis SK14]
          Length = 363

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/331 (12%), Positives = 115/331 (34%), Gaps = 15/331 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS-VMCLFIVPLLFLFYYGMLEM 89
           F P L +  + +   P  +           + +++     ++ +  + + F+    +  +
Sbjct: 41  FLPFLISGFLFYICLPFQNILER--WGFPRWASILTIFIGLIAIIAIVVSFIAPIIISNI 98

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             L+ +     +    +  +   +       +  T  ++          T + +N + +I
Sbjct: 99  NNLIKQTPALQKEAEHIINF--SLKQMDKLPDDVTHRINKAVRSVGDGATSVLSNSVTYI 156

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
             F S            +I +   L +  +D       +    +     +   + + +  
Sbjct: 157 TSFIST--------VFLLIMVPFFLIYMLKDHEKFIPAIGKFFKGERKVFIVDLLKDLNF 208

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIY 268
            ++S   G   +++  G++L   Y + G+P    L +   +  +IP  G  +SFT  +I 
Sbjct: 209 TLKSYIQGQVTVSVILGIILYIGYTIIGLPYTPLLVLFAGVANLIPFLGPWLSFTPAAIL 268

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
            +I+G       + +   I   +    + P ++G  + +  L     ++      G   +
Sbjct: 269 GIIEG-PTTFIWVCVVTLIAQQLEGNVITPNVMGKSLSIHPLTIIVVILAAGDLGGFTLI 327

Query: 329 FIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            I   L A+I  +        +   +K +S+
Sbjct: 328 LIAVPLYAVIKTLVSNIFKYRQRIIDKANSD 358


>gi|83647590|ref|YP_436025.1| permease [Hahella chejuensis KCTC 2396]
 gi|83635633|gb|ABC31600.1| predicted permease [Hahella chejuensis KCTC 2396]
          Length = 353

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 59/341 (17%), Positives = 117/341 (34%), Gaps = 22/341 (6%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLS----ALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +I+FI+LV+   +  FF  +L+    +++I +    +               AV++  +
Sbjct: 18  AVILFILLVAGVLVMAFFGAMLAPVIGSIVIAYILQGLVIKLQRLGMGH--IYAVLSVFA 75

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
                 V L  +     L ++++ S           +   +  +P            +  
Sbjct: 76  --LFVGVTLASVLLILPLMVRQVTSLFQELPSMMTNLQTLIKLLPEQYPQFFTEESVVGL 133

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            + L         T    ++  F+       L   +  + + I +FFF +D   I   L 
Sbjct: 134 SRQLTTEV-----TKITQWVFSFSLSSIPTLLAIMIYAVLVPIMVFFFLKDRGVILNSLS 188

Query: 190 SLG---EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           SL      L    W + +      IR   L + I+    G+    A+ L G+   + L V
Sbjct: 189 SLLPTERRLMTNIWAEANIQFANYIRGKVLEILIV----GVATYVAFVLMGLNYSLLLAV 244

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTLRPFLVGGP 304
           +  +  +IP  GA I    V++  L +         L +   +   +    L P L    
Sbjct: 245 LVGLSVVIPYIGAAIVTIPVALIALFQWGWGPDFIWLMVAYGVIQALDGNVLVPLLFSEV 304

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           + L  +     ++      G+ G+F    L  L+  I+   
Sbjct: 305 VNLHPVVIIVSVLVFGGLWGIWGVFFAIPLATLLKAIFSAW 345


>gi|15603870|ref|NP_246944.1| hypothetical protein PM2005 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12722446|gb|AAK04089.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 417

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/337 (13%), Positives = 111/337 (32%), Gaps = 20/337 (5%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + IIL  +        P L +L I     PI     S+K     +LA+   + ++ +   
Sbjct: 18  IVIILAGVKVASEIAVPFLLSLFIAIICSPIIRFMTSRKVPH--WLAITLLLLMILVVFF 75

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +L L      E  + + +                 +      + L          L + 
Sbjct: 76  SVLSLINSTAREFTQSIPQY---------------RLLLSERINALVLLAKKWNIPLDLS 120

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           +E  ++      I    S   + F     ++  + + + F   +      +L  +     
Sbjct: 121 TERTMEYMDPSVIMNLVSSTLLSFSGVVTNVFVLFLVVIFMLSEAPFAKHKLALVFSSDV 180

Query: 197 PA--YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 +     + + + S     T+ ++  G+ +     L  V   +    ++ ++  I
Sbjct: 181 RDVHREEHYINRILQGVISYLGVKTLTSLLTGVCVYILLELTDVQYAILWATLSFLLNYI 240

Query: 255 P-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P  G+ I+   + +  L+         + +       IV   + P ++G  + L  L  F
Sbjct: 241 PNIGSIIAAVPIVVQALLLNGFPTGLGVAIGVGAVNMIVGNIIEPKMMGRTLGLSTLVVF 300

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             L+     +G +G+ +   L  ++ +  + S   +K
Sbjct: 301 LSLLFWGWLLGTVGMLLSVPLTMVLKIALEASPETVK 337


>gi|307721500|ref|YP_003892640.1| hypothetical protein Saut_1581 [Sulfurimonas autotrophica DSM
           16294]
 gi|306979593|gb|ADN09628.1| protein of unknown function UPF0118 [Sulfurimonas autotrophica DSM
           16294]
          Length = 341

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 116/328 (35%), Gaps = 23/328 (7%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + I+L  +        P L +L I     P+Y+ F      S     +++   V+ +FI+
Sbjct: 16  VVIVLAGIKSASVIIIPFLLSLFIAIILSPLYNYF-----NSKGIADILSVTLVITVFIL 70

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L F+       + +  + +    Q               +          +    + I 
Sbjct: 71  FLAFVAKLIGTSVHDFSANIDTYAQK--------------LSGYYQLISTYAASLGIAIS 116

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           ++       +    +FA+           +   +I+ + F   +     ++++    H  
Sbjct: 117 TDDISNLINMKQAMKFATSIIQSMGSMFTNGFIIILTVVFMLLESQYFVKKVEFADGH-- 174

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
                     +   I++  +   +I++  G+++  +    G       G++  ++  IP 
Sbjct: 175 -QETIAHIETIFSKIKNYMVLKALISLLTGVIVWLSLSFIGTDYAFLWGILAFMLNFIPN 233

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ I+     +  L++    +A  + L   +   ++   + P ++G  + L  L  F  
Sbjct: 234 IGSIIAAIPAVLITLVQLGAMSALLVTLLYTVINVVIGSIVEPKVMGKGLGLSTLIIFLS 293

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L+     +G++G+ +   L  +  +I+ 
Sbjct: 294 LLFWGWLLGIVGMLLSIPLTIMAKIIFD 321


>gi|317131258|ref|YP_004090572.1| protein of unknown function UPF0118 [Ethanoligenens harbinense
           YUAN-3]
 gi|315469237|gb|ADU25841.1| protein of unknown function UPF0118 [Ethanoligenens harbinense
           YUAN-3]
          Length = 366

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 57/362 (15%), Positives = 127/362 (35%), Gaps = 27/362 (7%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWP-------IYSSFISKKEESSTFLA 63
           + R +I  +++  L  L+   +  L   ++ +           ++     +K +    +A
Sbjct: 13  VRRILIFIVMVALLALLRSMLSIFLLTFMLVYIGNSAEKAVSQLFLKVFRRKADPRVVVA 72

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           V+  + ++ L ++ L       + ++ +L++ +                       +   
Sbjct: 73  VLYALVILALVML-LWIYIPVIVRQISDLITNMTDYFTSVSKTKASAGGRFSLESITAFV 131

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF- 182
           + H+   + L+         +G   I +F +  G    +     IFM + L  F+  G  
Sbjct: 132 SSHVDVSKYLE---------SGGTSIAQFLTNLGTASFN-----IFMSLILSLFFLLGKP 177

Query: 183 ---SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
              +  +Q  +          +   R       +      +I+     +   A  + G P
Sbjct: 178 SVVAFGRQFKNSKLSWMYEDMRYFVRKFSNSFGAVIQTQLLISCINTTISTVALLIMGFP 237

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           S + L  +  ++ ++P  G  IS   + I   ++G I     + +  A+   +    L P
Sbjct: 238 SVIGLAAMIFVLGLVPVAGVFISLVPLCIIGYVQGGITKVIWVLVLIAVLHALEGYVLNP 297

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            L+    +LP   TF  L+     +GL GL IG  L   I  + +      ++   +  S
Sbjct: 298 KLMSNKTQLPVFITFLVLLIAEHLIGLWGLVIGLPLAVFILDVLEVLPQGGRQETRRPLS 357

Query: 359 NF 360
            F
Sbjct: 358 RF 359


>gi|219669720|ref|YP_002460155.1| sporulation integral membrane protein YtvI [Desulfitobacterium
           hafniense DCB-2]
 gi|219539980|gb|ACL21719.1| sporulation integral membrane protein YtvI [Desulfitobacterium
           hafniense DCB-2]
          Length = 365

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 51/311 (16%), Positives = 104/311 (33%), Gaps = 9/311 (2%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVL---SALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
            ++ +  M  + V    L  F A  L    A  I     P+   F+   + S    AV+A
Sbjct: 27  KVITFFFMEFMPVFGQVLSQFLAAFLPFIIAFFIALLLEPLVLRFMQGLKASRPIAAVLA 86

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            V  +      +  +      E+ +L +               L  I   +  +      
Sbjct: 87  LVLAILGIGSIVFLIVVRLYTELSDLGNSFPSYGYLVGFFNNILGTIDNFIQLNPQIQIS 146

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +++     I S       G   +  F S          + ++  ++A FF       +  
Sbjct: 147 INNATQGLIDSLQGWALTGSKVLLNFISA----LPGVFIVLVVSVVATFFMSASYPGVKN 202

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
              +L    +    + +SR +   +        I+    G++L       G P    +G 
Sbjct: 203 FFSNLVPRKWKPGARSVSRALGAAVVGFVRAEVILISVTGIILTVGLLWMGNPYAFTIGF 262

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           I+A++ ++P  G  + F    + L I G++     L +   I   ++ + L P ++   I
Sbjct: 263 ISALLDLLPIVGTGMIFVPWIVGLFILGSVSEGIKLLIIYLIA-TVIRQILEPKVMSQNI 321

Query: 306 KLPFLPTFFGL 316
            +  L T   +
Sbjct: 322 GIHPLATIISM 332


>gi|302339385|ref|YP_003804591.1| protein of unknown function UPF0118 [Spirochaeta smaragdinae DSM
           11293]
 gi|301636570|gb|ADK81997.1| protein of unknown function UPF0118 [Spirochaeta smaragdinae DSM
           11293]
          Length = 359

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/294 (16%), Positives = 97/294 (32%), Gaps = 13/294 (4%)

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
                +++V +  + I  +  +    + E ++L   V+  +   + VP  L   P G   
Sbjct: 77  RLAITLSSVIIFSILIFGISGIIPIILDEGRKLFP-VLRDSFLSLSVPDALRQNPFGQEL 135

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            +   + +S            L     +F     +           S+I  +I   +F  
Sbjct: 136 MDGIRQAVSS-----------LMQKTAEFGVIIVNDIFQRLPGISTSLIIFVITAAYFTS 184

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
                 + L            +     V   IR    G  I+A+  G+ +     L G+P
Sbjct: 185 LLPVFKKNLWRFLPASGRERARSFLSEVYGDIRHFIAGQMIVALFVGVAVWLGMLLVGIP 244

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             + +G ++A+   IP  G  ++     I  L  G +     + L            L P
Sbjct: 245 YAMFIGFLSALTNFIPYMGIIVAAVPSLILGLSHGGLIGLLKVTLVLVAVNQFEGWVLSP 304

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            + G  +KL +      ++     +G++G+ I   L+      W   +    +N
Sbjct: 305 KIQGSRMKLNWFAIILAILLSGTLLGVVGILIAIPLVVFFKRFWIWYVQEALQN 358


>gi|152992436|ref|YP_001358157.1| hypothetical protein SUN_0842 [Sulfurovum sp. NBC37-1]
 gi|151424297|dbj|BAF71800.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 352

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/315 (14%), Positives = 116/315 (36%), Gaps = 26/315 (8%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +F++  +   +  F   V  ++I+     P+++   SK       L V+  +S++     
Sbjct: 28  IFLLKAASAVIVPFLIAVAVSIILA----PLFTRLESKHIPKPVSLIVVILLSLLP---- 79

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            ++ L  Y   +  E  +       +      ++  +   +     +  H+   +   +L
Sbjct: 80  -IILLGGYVAEQAGEFAANYQSIKAN------FMQSLQAFIAQLGHYGIHIDDAKLNAVL 132

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            ++ +     +   +   +F  IFL + + + FM++   +FY        ++  + +   
Sbjct: 133 EKSNIAGILKNLAAQANEQFSNIFLIFFM-VAFMLMESTYFY-------NKMMKIAKDY- 183

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                 +   + + I+S F      ++   +   +  W   +P +    V+   +  IP 
Sbjct: 184 -QVDGNVMLELLEKIKSYFSIKVKTSLLTAVWAFTVLWYYEIPYYYLWAVLAFALNFIPV 242

Query: 257 -GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ ++     ++ LI   I     + LW  I   +V   L P ++G  + L  L  F  
Sbjct: 243 IGSILAAIPAIVFALISHGIGTTLWVALWYVIINMVVGNILEPKIMGKGLGLSALVIFLS 302

Query: 316 LVGGVRTMGLLGLFI 330
           +       G  G+ +
Sbjct: 303 MTFWGWVFGPAGMIL 317


>gi|307244676|ref|ZP_07526779.1| membrane family protein [Peptostreptococcus stomatis DSM 17678]
 gi|306491927|gb|EFM63977.1| membrane family protein [Peptostreptococcus stomatis DSM 17678]
          Length = 371

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 68/172 (39%)

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             ++   +         +  + R+     ++ F+G  I AI  G++  +   + G P   
Sbjct: 200 QFARLFATFIPQPILDKFYYLLRVTDNTFKAFFIGQFIEAIILGVLCSTGLLILGFPYAF 259

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            +G +  + A+IP             +++  N   A    L+  I   +    + P +VG
Sbjct: 260 MIGSVVGVTALIPIIGAYLGGLFGFLMILSVNPLRAFAFLLFLIILQQLEGNLIYPKVVG 319

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             I LP +  F  ++      G+ G+ +G  ++A +  I K+ +   ++  E
Sbjct: 320 SSIGLPGIWVFVAIIISGGLFGITGIILGVPIIASMYKILKDYVNKEQKALE 371


>gi|298711503|emb|CBJ26591.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 711

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 70/194 (36%), Gaps = 6/194 (3%)

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
               + FG   +     ++ +   +F+       + + +      +  A  K+  + +  
Sbjct: 313 ATLLASFGSFLIMVGFKVVLLFTCVFYMTSHDDFLERNIGDFLP-VSQADQKRAMKKLRG 371

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIY 268
            I   F     +A   G+V   ++ +  +        +  +++++P   A I     ++ 
Sbjct: 372 AIHGVFFMPCKVACLRGVVTLFSFKVLQIEFPFFAAFVAVLVSILPIVPAYIVCWPWALM 431

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L++ G       L +   + L ++D  L      G  +     T      G    G  G+
Sbjct: 432 LVLHGRWV-GITLAISQHLILSVIDTELY---TQGVREANPYLTSLSCFLGYSVFGAHGV 487

Query: 329 FIGPVLMALIAVIW 342
            +GP+++ L  +I+
Sbjct: 488 LMGPLVLCLGTLIY 501


>gi|254422139|ref|ZP_05035857.1| hypothetical protein S7335_2289 [Synechococcus sp. PCC 7335]
 gi|196189628|gb|EDX84592.1| hypothetical protein S7335_2289 [Synechococcus sp. PCC 7335]
          Length = 238

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 76/208 (36%), Gaps = 1/208 (0%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +   +       L   LS++  I    +   D  +++     L    +     +    + 
Sbjct: 15  LALRSFTVTTDILGTLLSLVLAIFISGYMLADSSTLTTSFVRLFPQPWDQEIGQQLPEIG 74

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGV-PSHVALGVITAIMAMIPGGAPISFTAVSI 267
             I     G  I++    LV G      G+    V LG I  +  +IP   PI     ++
Sbjct: 75  SRIGGYIRGRLIVSFTLALVTGVGLSFLGLKDFAVGLGAIAGVTNLIPFLGPILGAIPAL 134

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            + I    +    + L+      I    L P LVG  + +  L     ++GG + +G++G
Sbjct: 135 IVAIPLGGWVVLWVILFYITIQNIETYILDPLLVGNSVGVHPLYQLLAVLGGTQVLGIIG 194

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKEK 355
             I P  +A  AV+ +   +  K   EK
Sbjct: 195 ALIVPPWVAGGAVLLENLYLKPKLKNEK 222


>gi|77457595|ref|YP_347100.1| hypothetical protein Pfl01_1368 [Pseudomonas fluorescens Pf0-1]
 gi|77381598|gb|ABA73111.1| putative permease protein [Pseudomonas fluorescens Pf0-1]
          Length = 356

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/349 (13%), Positives = 112/349 (32%), Gaps = 18/349 (5%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK---EESSTFLA 63
           + + ++  +++F+   ++  L G  APVL+ +++ +    +  +    +     +   + 
Sbjct: 15  DEEAVVLAVLLFLAFTAVLTLGGMLAPVLAGMVLAYLMQGLVVTLERLRVPGGAAVGLVF 74

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +    +M   +V L  L++  +    EL   +       + +P     +       +  
Sbjct: 75  ALFMGVLMVFIVVVLPLLWHQLITLFNELPGMLAKWQSLLLLLPERYPHLVSDEQVLQAI 134

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                                   +   F+     + ++  + ++ + I +FFF +D   
Sbjct: 135 EAARGEIGKF------------GQWALTFSLSSLPLLVNIMIYLVLVPILVFFFLKDRAM 182

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           I + +         A   +++  + + I +   G  I  +  G V   A+   G+     
Sbjct: 183 IGEWVRGYLPR-ERALITRVAEEMNRQIANYIRGKVIEIVICGGVTYIAFVALGLNYSAL 241

Query: 244 LGVITAIMAMIPGGAPISFTAVS--IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           L ++  +  ++P    +  T     I L   G       L     I   +    L P L 
Sbjct: 242 LALLVGVSVVVPYVGAVVVTVPVLLIALFQWGWSDQFIYLMAVYGIIQTLDGNVLVPLLF 301

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
              + L  +     ++      G  G+F    L  L   +         
Sbjct: 302 SEAVNLHPVAIICAVLLFGGLWGFWGVFFAIPLATLFKAVLDAWPRKEP 350


>gi|15837191|ref|NP_297879.1| permease [Xylella fastidiosa 9a5c]
 gi|9105453|gb|AAF83399.1|AE003904_20 permease [Xylella fastidiosa 9a5c]
          Length = 385

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/338 (13%), Positives = 135/338 (39%), Gaps = 16/338 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           ++++  +L   + L     P + ++ +G+ + P+            +    +  V  + +
Sbjct: 19  YVLVGGVLWMAWLLTPVLIPFVLSVFLGWLADPLVKRVE---WAGVSRAMAVCFVFFLVV 75

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQ 131
            ++ L+ + +  ++E      +VV        +  W+ +  IP     +    +    P+
Sbjct: 76  LLLLLVLMIFVPLIE-----RQVVTLINTFPQMHDWVVNTVIPWVEQKTGSQLRTWLDPE 130

Query: 132 SLKILSETFLKTNGIDF--IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            +     +  +  G     +  + SR G + + + +++  + I  F+F RD     +++ 
Sbjct: 131 QMIQWMHSNWEQAGGVARGLFGYVSRSGFVMVTWVINLALLPILSFYFLRDWDKWVERVA 190

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +     +     ++     +V+ +   G  ++ +  G +      L G+   + +G+I  
Sbjct: 191 AAIPRAYIGTVSRLVVEANEVLGAFIRGQFLVMLALGAIYAVGLSLVGLKLGLLIGLIAG 250

Query: 250 IMAMIPGGAPISFTAVSIYLLIKG----NIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +++ IP    I+   +++  +I      ++     + +   +   +    L P +VG  I
Sbjct: 251 LISFIPYLGAITGVVLALIAVIVQVHGLDLQLLVLVGVVFGVGQLLESYVLTPRIVGDKI 310

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L  +   F ++ G +  G +G+ +   + A++ V+ +
Sbjct: 311 GLHPVAVIFSVMAGGQLFGFVGMLLALPVAAVVNVLLR 348


>gi|296270262|ref|YP_003652894.1| hypothetical protein Tbis_2291 [Thermobispora bispora DSM 43833]
 gi|296093049|gb|ADG89001.1| protein of unknown function UPF0118 [Thermobispora bispora DSM
           43833]
          Length = 407

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 53/321 (16%), Positives = 101/321 (31%), Gaps = 15/321 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             PV  A ++    +P+             +   I  +  + + +     +      E  
Sbjct: 29  VLPVAIAFLLTALLYPLTKRLRDA-GLRPIYATWITMLLGLAVIVGVGFLIGNRANEEFP 87

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            LV ++    +       WL + P  +  +++        + L       + T       
Sbjct: 88  RLVEQL---QRTAAEAQHWLLNGPLQLKQAQITHIVDEIGKQLTEQRNEIVNTVLTG--- 141

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     L+   S + ++   FF  +DG  I            P    +  R     
Sbjct: 142 ------ATAVLEALASFVLVVFVTFFLLKDGDKIWAWFLKAFGDAAP-RVDRAGRAAWVT 194

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS-IYL 269
           I     G   IA   G+V+G+   + GVP  V L V+  + + IP    +    ++ +  
Sbjct: 195 ICHYVQGTVAIAAIHGIVMGTVLAVMGVPLWVPLAVLIFLGSFIPIIGIVVTGGLATLVT 254

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           L      +A        +E  + +   +P +VG  I    L     L  G    G+ G  
Sbjct: 255 LGAQGWISALVFLAILVVEQQLENHLFQPQIVGRAIDFHPLAVILVLAVGGVIAGIPGAA 314

Query: 330 IGPVLMALIAVIWKESIMAIK 350
           +   L A++     E   A +
Sbjct: 315 VAVPLTAVLYRALPELFRAER 335


>gi|149374611|ref|ZP_01892385.1| hypothetical protein MDG893_11201 [Marinobacter algicola DG893]
 gi|149361314|gb|EDM49764.1| hypothetical protein MDG893_11201 [Marinobacter algicola DG893]
          Length = 387

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/310 (12%), Positives = 97/310 (31%), Gaps = 8/310 (2%)

Query: 40  IGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI--VPLLFLFYYGMLEMKELVSKVV 97
           I +   P+ ++    K       AV+  + +  +    +PL       + ++   + +  
Sbjct: 62  ISYALEPLVAAINRLKVPRPLAAAVVLILLIGIIAGASIPLKQEAMAMLDKIPVAIEQFQ 121

Query: 98  LANQHGIPVPRWL--SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASR 155
                       +               +    +  + +  +      +    I  +  +
Sbjct: 122 KNEASRPKDGESMMEKAQSAAKKIEATASPDRDNGDASQSGATPVRVVDEPLEIKDYVLQ 181

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK--KISRIVPKVIRS 213
                L         ++ ++F    G    +++  +    F    K  +I     + +R 
Sbjct: 182 GSPAALVLISQCFSALLLVYFVLAIGSLYRRKIVKISGPSFARMRKAARIMNEFHRSVRQ 241

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIK 272
               M + A+  G++   ++   GV      GV+  I + +P  G  +      +   I+
Sbjct: 242 FLFVMFVGAVFVGVLTWLSFMALGVEQAGFWGVLAGIASAVPYLGPFLVLMGTGMAAFIQ 301

Query: 273 -GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
            G +  +  +         I    L P+L      L  +  F GL+      G +GL + 
Sbjct: 302 FGELEMSIIVAGTSLAITSIQGYLLTPWLTSHISSLNAVAIFIGLLFWGWLWGPVGLVVA 361

Query: 332 PVLMALIAVI 341
             ++ ++  +
Sbjct: 362 TPILMIVKSL 371


>gi|309775840|ref|ZP_07670834.1| sporulation integral membrane protein YtvI [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308916378|gb|EFP62124.1| sporulation integral membrane protein YtvI [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 358

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 53/337 (15%), Positives = 107/337 (31%), Gaps = 17/337 (5%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGF----FAPVLSALIIGFTSWPIYSSFISKKEESS 59
           T      I+ ++ + II+  LY    +      P L   +I F   P+     +      
Sbjct: 3   TEKQRAFIIHFVYICIIITLLYVFLRYVMYAIMPFLIGFLIAFMLRPLIKKLTAMSGGHE 62

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
              + I  +       V +  L   G   +K+ V  +    Q  +    +L+D  G    
Sbjct: 63  RLWSTIVILLFYTTIGVFVTLLSMKGFAFLKDFVENIPRLYQENLEP--FLNDTLGN--V 118

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI---IFMIIALFF 176
             +W +               L+++    I   +     +F     S+   +        
Sbjct: 119 ESVWKEVDITSAQAIQSFLDGLQSSLYSIISSISKSLVSMFTGAAASLPNLVISFFFAII 178

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKI----SRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
                 +  Q++ S      P    +I           I S  L    I +   L L   
Sbjct: 179 SSFFFNADYQRIISFIIRQLPEKGAQIVFTARHYFTDTIASFALAYEKIMLLTFLELTIG 238

Query: 233 YWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
            ++ G+ + + +  + AI  ++P  G         +   +   I  +  L +   + + +
Sbjct: 239 LYVLGIENALVIAFLIAIFDVLPVLGTGGIMIPWILICFLNNQIKTSVGLLILY-LVITV 297

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           +   + P +VG  I L  L     +  G +  G LG+
Sbjct: 298 IRNIIEPKIVGKQIGLHPLLMLLCMYLGAKLFGFLGI 334


>gi|28199441|ref|NP_779755.1| permease [Xylella fastidiosa Temecula1]
 gi|182682169|ref|YP_001830329.1| hypothetical protein XfasM23_1648 [Xylella fastidiosa M23]
 gi|28057556|gb|AAO29404.1| permease [Xylella fastidiosa Temecula1]
 gi|182632279|gb|ACB93055.1| protein of unknown function UPF0118 [Xylella fastidiosa M23]
 gi|307578438|gb|ADN62407.1| hypothetical protein XFLM_02030 [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 385

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 51/348 (14%), Positives = 140/348 (40%), Gaps = 16/348 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           ++++  +L   + L     P + ++ +G+ + P+           S  +AV     ++ L
Sbjct: 19  YVLVGGVLWMAWLLTPVLIPFVLSVFLGWLADPLVKRVE--WVGVSRAMAVCFVFFLVVL 76

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQ 131
            +V +L +F   +        +VV        +  W+ +  IP     +    +    P+
Sbjct: 77  LLVLVLMIFVPLIE------RQVVTLINTFPQMHDWVVNTVIPWVEQKTGSQLRTWLDPE 130

Query: 132 SLKILSETFLKTNGIDF--IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            +     +  +  G     +  + SR G + + + +++  + I  F+F RD     +++ 
Sbjct: 131 QMIQWMHSNWEQAGGVARGLFGYVSRSGFVMVTWVINLALLPILSFYFLRDWDKWVERVA 190

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +     +     +++    +V+ +   G  ++ +  G +      L G+   + +G+I  
Sbjct: 191 AAIPRAYIGTVSRLATEANEVLGAFIRGQFLVMLALGAIYAVGLSLVGLRLGLLIGLIAG 250

Query: 250 IMAMIPGGAPISFTAVSIYLLIKG----NIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +++ IP    I+   +++  +I      ++     + +   +   +    L P +VG  I
Sbjct: 251 LISFIPYLGAITGVVLALIAVIVQVHGLDLQLLVLVGVVFGVGQLLESYVLTPRIVGDKI 310

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L  +   F ++ G +  G +G+ +   + A++ V+ + +     E++
Sbjct: 311 GLHPVAVIFSVMAGGQLFGFVGMLLALPVAAVVNVLLRYAHERYIESE 358


>gi|193068845|ref|ZP_03049805.1| putative membrane protein [Escherichia coli E110019]
 gi|193071500|ref|ZP_03052411.1| putative membrane protein [Escherichia coli E110019]
 gi|192955177|gb|EDV85669.1| putative membrane protein [Escherichia coli E110019]
 gi|192957921|gb|EDV88364.1| putative membrane protein [Escherichia coli E110019]
          Length = 353

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/338 (13%), Positives = 119/338 (35%), Gaps = 29/338 (8%)

Query: 1   MRETMLNPQ-------GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS 53
           M   M  PQ        +++   + +IL  ++        +L AL       P+ + FI 
Sbjct: 1   METPMETPQPDKTGMHILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIR 60

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
           +  +       +A   V+ + ++ L  L         E +S +   N+            
Sbjct: 61  RGVQRP-----VAITIVVVVMLIALTALVGVLAASFNEFISMLPKFNKE----------- 104

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
              +       + +    +L +  E  L+    + +  F +           S++ +++ 
Sbjct: 105 ---LTRKLFKLQEMLPFLNLHMSPERMLQRMDSEKVVTFTTALMTGLSGAMASVLLLVMT 161

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           + F   +   +  ++     +    +   + R +  V     L   + ++  G+++    
Sbjct: 162 VVFMLFEVRHVPYKM-RFALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGVIVWLGL 219

Query: 234 WLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            L GV   +   V+  ++  +P  GA IS     I +L+   ++    +     +   ++
Sbjct: 220 ELMGVQFALMWAVLAFLLNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVI 279

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              L P ++G  + +  +  F  L+     +G +G+ +
Sbjct: 280 GNILEPRMMGHRLGMSTMVVFLSLLIWGWLLGPVGMLL 317


>gi|225420000|ref|ZP_03762303.1| hypothetical protein CLOSTASPAR_06341 [Clostridium asparagiforme
           DSM 15981]
 gi|225041351|gb|EEG51597.1| hypothetical protein CLOSTASPAR_06341 [Clostridium asparagiforme
           DSM 15981]
          Length = 413

 Score = 67.2 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 53/361 (14%), Positives = 123/361 (34%), Gaps = 35/361 (9%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF----------LA----- 63
           ++  +   L     P++   ++ +   P+Y+       E+ +            A     
Sbjct: 35  MVAAAAGKLVDVLMPIIYGAVLAYLMLPVYNKTRRYVTENLSVKVKNEKMVQSAARGLGT 94

Query: 64  ------VIATVSVMCLFIVPLLFLFYYGMLEM-KELVSKVVLANQHGIPVPRWLSDIPGG 116
                 +IA V  +C  ++P ++    G+ E   E ++ + +  Q  +     L  +   
Sbjct: 95  LVSLLLLIAIVVGLCWMLLPQIYTSILGLQESFSENINNLSIWLQKQLADNEALEQM--- 151

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
                ++ +     ++    +     +  I+ +         +  +  + +I M+   F 
Sbjct: 152 --VVPVYEQVTDKLETWLYDTLVPNMSMVINILSTGLLGVVTVLKNSLIGLIVMVY--FL 207

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWK----KISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
             +D  ++S Q   +   LFP        +  R    V      G  + ++  G++    
Sbjct: 208 NIKD--TLSAQSKKIVYSLFPLKQANRIIEEVRFTHSVFGGFITGKLLDSLIIGVICFFC 265

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
             L  +P  + + VI  +  +IP   P      S +L++  +        L+  +     
Sbjct: 266 MRLLRMPYVLLVSVIIGVTNVIPFFGPFIGAIPSAFLILLVSPMKCLYFLLFVLVLQQFD 325

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              L P ++G    LP     F ++     +G +G+ I     A+   +  E +    E 
Sbjct: 326 GNILGPKILGESTGLPSFWVLFSILLFGGLLGFVGMVIAVPTFAVFYHLASEYVNRCLEK 385

Query: 353 K 353
           K
Sbjct: 386 K 386


>gi|188989483|ref|YP_001901493.1| hypothetical protein xccb100_0087 [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167731243|emb|CAP49417.1| conserved hypothetical membrane protein [Xanthomonas campestris pv.
           campestris]
          Length = 346

 Score = 67.2 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 56/313 (17%), Positives = 91/313 (29%), Gaps = 23/313 (7%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           V  A+++      + S        S      +  V V   F   L         E+  L 
Sbjct: 36  VFGAVVVAVLLRALASWVTRYTPLSDGTALGLVVVVVAVGFTALLWLFGSQLATELGALQ 95

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             +    Q       W++  P G    EL                    +N       FA
Sbjct: 96  RTLP---QAWARFHDWVAAGPLGPALEEL------------TRQAPARVSNLAPRAGAFA 140

Query: 154 SRFGMIFLDYCLSIIFMIIALF--FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                   +  L +   +        YR G      +  L      A      R     +
Sbjct: 141 LSITGGVANLFLVLAGAVYLAAQPQLYRRG------VLLLFPVQVRATMDDAVRASGTAL 194

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R    G  +  +  G + G   W  G+P  +ALG+I  ++  +P   PI     +I L  
Sbjct: 195 RLWLRGQLLAMVVVGALTGLGLWALGIPGALALGIIAGLLDFVPIVGPILAAIPAILLGF 254

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
             +   A        +   I    L P +    + LP +   F L G    +G  G+ + 
Sbjct: 255 TVSPQMALATAALFVVVQQIEGNILLPLIQQRTVDLPPVLLLFSLFGIGTLLGPAGVLLA 314

Query: 332 PVLMALIAVIWKE 344
             L  +  V+ K 
Sbjct: 315 APLTVVAFVLVKR 327


>gi|325206005|gb|ADZ01458.1| putative membrane protein [Neisseria meningitidis M04-240196]
          Length = 356

 Score = 67.2 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 126/336 (37%), Gaps = 10/336 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
              ++  ++ L     P   A ++ +   P+      KK  +    ++   V  + L + 
Sbjct: 19  FAALVWLVFALGDTLTPFAVAAVLAYVLDPLVEWL-QKKGLNRASASMSVMVFSLILLLA 77

Query: 77  PLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            LL +    + +   L S++  L       +  WL +  GG      + +         +
Sbjct: 78  LLLIIVPMLVGQFNNLASRLPQLIGFMQNTLLPWLKNTIGG------YVEIDQASIIAWL 131

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            + T   +N +        R G   +    +++ + + L++F  D    S  +  L    
Sbjct: 132 QAHTGELSNALKAWFPVLMRQGGNIVSSIGNLLLLPLLLYYFLLDWQRWSCGIAKLVPRR 191

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +P
Sbjct: 192 FAGAYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLVLVGLDSGFAIGMLAGILVFVP 251

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGGPIKLPFLPTF 313
                +   ++    +         L +W    +  F+    + P +VG  I L      
Sbjct: 252 YLGAFTGLLLATVAALLQFGSWNGILSVWAVFAVGQFLESFFITPKIVGDRIGLSPFWVI 311

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           F L+   + MG +G+  G  L A+  V+ +E +   
Sbjct: 312 FSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVQKY 347


>gi|323486620|ref|ZP_08091941.1| membrane protein [Clostridium symbiosum WAL-14163]
 gi|323692237|ref|ZP_08106479.1| hypothetical protein HMPREF9475_01342 [Clostridium symbiosum
           WAL-14673]
 gi|323400001|gb|EGA92378.1| membrane protein [Clostridium symbiosum WAL-14163]
 gi|323503699|gb|EGB19519.1| hypothetical protein HMPREF9475_01342 [Clostridium symbiosum
           WAL-14673]
          Length = 414

 Score = 67.2 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 125/354 (35%), Gaps = 25/354 (7%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-----------STFLAVIATVSVMC 72
           ++ + G  AP++   ++ + + PIY+      +             +       T   + 
Sbjct: 40  IHMIIGIVAPIIYGAVLAYLTTPIYNRVTKAVKLKLLKVWKDEKHVTGLAKAAGTFVSVS 99

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHLSHPQ 131
           L +V +  LF   + +M E +  +  +    +  +  W+  +       E     LS+ Q
Sbjct: 100 LVLVIVAGLFQMLIPQMIESLMGIRDSFPTYLQNLYAWIQQVLADNPDIE--AMVLSNLQ 157

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLD-------YCLSIIFMIIALFFFYRDGFSI 184
           +   ++E++L+ +  +        F             +  + +  +I + +      ++
Sbjct: 158 NSVTMAESWLEKSFTNIDMTRLGEFLTGVSSSVLSLLVFIKNWLIGLIVMVYLLNIKDTL 217

Query: 185 SQQLDSLGEHLFPAYWK----KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           S Q   +        W     +  R V ++     +G  + ++  G++      L  +P 
Sbjct: 218 SAQGKKIIYSCMNLKWANNVIEELRFVNQMFGGFIIGKLVDSLIIGIICFIGTSLMKMPF 277

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + + VI  +  +IP   P      + +L++  +        ++  +        L P +
Sbjct: 278 TLLISVIIGVTNIIPFFGPFIGAIPTGFLVLLVSPVKCIYFLIFILLLQQFDGNILGPKI 337

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           +G    L      F ++      G +G+ I     A+I  +   ++    +NK+
Sbjct: 338 LGDSTGLSSFWVLFSILLFGGLFGFVGMIIAVPAFAVIYDLIARAVHFSLKNKK 391


>gi|299139198|ref|ZP_07032374.1| protein of unknown function UPF0118 [Acidobacterium sp. MP5ACTX8]
 gi|298598878|gb|EFI55040.1| protein of unknown function UPF0118 [Acidobacterium sp. MP5ACTX8]
          Length = 355

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 55/355 (15%), Positives = 113/355 (31%), Gaps = 17/355 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSF--ISKKEES 58
           MRE+      I+ +  + I L   + L      V  + +      P+      +  +  S
Sbjct: 1   MRESRATRSNILFFFAVLIALGLAWKLLNVLELVYVSALFAVVLMPVVQQIMRVRIRGWS 60

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
            +    I  +    LF + L  +       +  +V  +           R+ +D+P  + 
Sbjct: 61  PSRPIAIVVLLGTVLFALTLFLIVG-----LPPVVHDIQ----------RFAADLPKRIP 105

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                   L     L + S      +    +  +      +++   L I+   I   +F 
Sbjct: 106 DLVARLHKLPMADKLGVDSLAQRSEDLASSVATYLLASLPLWMKRILDIVTAFILCIYFM 165

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            +G        S           K        +    LG   + +  G+     +    V
Sbjct: 166 LEGEYAYYYFLSFFTASERTRLAKTLITAEHRMSKWLLGQGALMLILGITSTCVFGALHV 225

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              V LGV+  +  +IP    +    +   +    +      +F++ AI + + +  L P
Sbjct: 226 RYFVLLGVLMGLFNIIPVAGGVITILLVASVAALDSWSKMLGVFIFYAIYVQLENGFLTP 285

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            ++   + L  L     L+ G    G+ G  +     ALIAV+  E  +     +
Sbjct: 286 RIMKTSVNLMGLSVLVALLAGTALAGIPGALVSVPTAALIAVLMDEYFVKADGEQ 340


>gi|295703106|ref|YP_003596181.1| hypothetical protein BMD_0970 [Bacillus megaterium DSM 319]
 gi|294800765|gb|ADF37831.1| putative membrane protein [Bacillus megaterium DSM 319]
          Length = 344

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 57/333 (17%), Positives = 116/333 (34%), Gaps = 25/333 (7%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           ++     +L   I  F       +   K   +ST + ++  ++++    +         M
Sbjct: 29  IRSMLQLLLFTFIFTFLIGRFQQTLRRKLPLNSTLILIVIYIALIGALGIVGYVYIPVIM 88

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++ ELV K++   +H  P   +++ I                  +LK           I
Sbjct: 89  TQVTELVQKLMYFYKH-PPDNTFVTYI----------------IDNLKRFKSPENIQQNI 131

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK---I 203
           D +  + S  G +     L+++  +  L     +   I +    L +     ++K+   +
Sbjct: 132 DLVYSYLSNIGKVSAQVFLALLLSLFFL----LEKSRIHRLFVQLEQSRLGWFFKEAGYL 187

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISF 262
            R              IIA    ++   A W+ G P+ +ALGV+  ++ ++P  G  +S 
Sbjct: 188 GRKFVNSFGKVIEVQFIIAFVNSILSVIALWVLGFPNLLALGVMVFLLGLVPVLGVFVSL 247

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             +       G       + +   +   +    L P L+     LP   TF  LV G   
Sbjct: 248 IPLCTIAYSLGGGVKVLSVLIMVVVLHALESYVLNPKLMSSKTNLPTFITFIILVFGEHF 307

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G+ GL +G  +      +           KE+
Sbjct: 308 LGVWGLILGIPIFIFFLDLVGVDSAQQLSKKEE 340


>gi|225012985|ref|ZP_03703402.1| protein of unknown function UPF0118 [Flavobacteria bacterium
           MS024-2A]
 gi|225002884|gb|EEG40863.1| protein of unknown function UPF0118 [Flavobacteria bacterium
           MS024-2A]
          Length = 362

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/326 (14%), Positives = 116/326 (35%), Gaps = 18/326 (5%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           ++ A +I     PI   FI +    +     +    ++ L I          + + + L 
Sbjct: 37  MIIAGVISLIGRPINQFFIKRLHFKNILATSLTLFILLGLLISVFSLFVPLLIQQGENL- 95

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             ++            + +I        ++ +  +     ++  +   +      +P   
Sbjct: 96  -SLLDVESLKKTTETLIQEI-------SIYFQVDNSFWQQQLAVDNLFQNVNFGLLPELL 147

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
           ++   +   + + +  ++  LFFF +D       + +L         +K      +++  
Sbjct: 148 NQILELLGGFTIGLFSVLFILFFFLKDSHLQDSIILTLVNDKITDRVEKSIEKTKRLLSR 207

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK- 272
            FLG+ +      ++      +  V +   +  + A++ +IP   PI    + + L +  
Sbjct: 208 YFLGLLLQISILLIIYSIVLAVFKVENAFIIAFLCALLNLIPYLGPIIGGLLMMTLTMSS 267

Query: 273 --GNIFNATCL-----FLWGAIELFIVDKTL-RPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             G  F++  L      + G +   ++D    +PF+    +K   L  F  ++     +G
Sbjct: 268 FIGADFSSVILPKTSYVMIGFVIGQLIDNFFSQPFIFSNSVKSHPLEIFIVILASGTLLG 327

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIK 350
            +G+ I   L   + VI +E +   K
Sbjct: 328 PVGMIIAIPLYTTLKVISQEFLAENK 353


>gi|121634907|ref|YP_975152.1| putative integral membrane protein [Neisseria meningitidis FAM18]
 gi|269214955|ref|ZP_05987479.2| putative membrane protein [Neisseria lactamica ATCC 23970]
 gi|304387523|ref|ZP_07369712.1| possible permease [Neisseria meningitidis ATCC 13091]
 gi|120866613|emb|CAM10364.1| putative integral membrane protein [Neisseria meningitidis FAM18]
 gi|269208647|gb|EEZ75102.1| putative membrane protein [Neisseria lactamica ATCC 23970]
 gi|304338410|gb|EFM04531.1| possible permease [Neisseria meningitidis ATCC 13091]
 gi|325132218|gb|EGC54912.1| putative membrane protein [Neisseria meningitidis M6190]
 gi|325138201|gb|EGC60771.1| putative membrane protein [Neisseria meningitidis ES14902]
          Length = 356

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 126/336 (37%), Gaps = 10/336 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
              ++  ++ L     P   A ++ +   P+      KK  +    ++   V  + L + 
Sbjct: 19  FAALVWLVFALGDTLTPFAVAAVLAYVLDPLVEWL-QKKGLNRASASMSVMVFSLILLLA 77

Query: 77  PLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            LL +    + +   L S++  L       +  WL +  GG      + +         +
Sbjct: 78  LLLIIVPMLVGQFNNLASRLPQLIGFMQNTLLPWLKNTIGG------YVEIDQASIIAWL 131

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            + T   +N +        R G   +    +++ + + L++F  D    S  +  L    
Sbjct: 132 QAHTGELSNALKAWFPVLMRQGGNIVSSIGNLLLLPLLLYYFLLDWQRWSCGIAKLVPRR 191

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +P
Sbjct: 192 FAGAYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLVLVGLDSGFAIGMVAGILVFVP 251

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGGPIKLPFLPTF 313
                +   ++    +         L +W    +  F+    + P +VG  I L      
Sbjct: 252 YLGAFTGLLLATVAALLQFGSWNGILAVWAVFAVGQFLESFFITPKIVGDRIGLSPFWVI 311

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           F L+   + MG +G+  G  L A+  V+ +E +   
Sbjct: 312 FSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVQKY 347


>gi|24114734|ref|NP_709244.1| hypothetical protein SF3492 [Shigella flexneri 2a str. 301]
 gi|30065249|ref|NP_839420.1| hypothetical protein S4271 [Shigella flexneri 2a str. 2457T]
 gi|110807301|ref|YP_690821.1| hypothetical protein SFV_3477 [Shigella flexneri 5 str. 8401]
 gi|187730420|ref|YP_001882139.1| hypothetical protein SbBS512_E3848 [Shigella boydii CDC 3083-94]
 gi|218707069|ref|YP_002414588.1| hypothetical protein ECUMN_3937 [Escherichia coli UMN026]
 gi|293407056|ref|ZP_06650980.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|298382802|ref|ZP_06992397.1| inner membrane protein yhhT [Escherichia coli FVEC1302]
 gi|24053951|gb|AAN44951.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30043511|gb|AAP19231.1| hypothetical protein S4271 [Shigella flexneri 2a str. 2457T]
 gi|110616849|gb|ABF05516.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|187427412|gb|ACD06686.1| putative membrane protein [Shigella boydii CDC 3083-94]
 gi|218434166|emb|CAR15083.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli UMN026]
 gi|281602822|gb|ADA75806.1| hypothetical protein SFxv_3808 [Shigella flexneri 2002017]
 gi|284923465|emb|CBG36560.1| putative membrane protein [Escherichia coli 042]
 gi|291425867|gb|EFE98901.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|298276638|gb|EFI18156.1| inner membrane protein yhhT [Escherichia coli FVEC1302]
 gi|320175695|gb|EFW50783.1| putative PerM family permease [Shigella dysenteriae CDC 74-1112]
          Length = 349

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/321 (13%), Positives = 114/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +       +A   V
Sbjct: 14  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITIV 68

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E +S +   N+                       + +   
Sbjct: 69  VVVMLIALTALVGVLAASFNEFISMLPKFNKELT--------------RKLFKLQEMLPF 114

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++  
Sbjct: 115 LNLHMSPERMLQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMR- 173

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+  +
Sbjct: 174 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGVIVWLGLALMGVQFALMWAVLAFL 232

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA IS     I +L+   ++    +     +   ++   L P ++G  + +  
Sbjct: 233 LNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMST 292

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 293 MVVFLSLLIWGWLLGPVGMLL 313


>gi|319934911|ref|ZP_08009356.1| hypothetical protein HMPREF9488_00187 [Coprobacillus sp. 29_1]
 gi|319810288|gb|EFW06650.1| hypothetical protein HMPREF9488_00187 [Coprobacillus sp. 29_1]
          Length = 393

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 69/213 (32%), Gaps = 1/213 (0%)

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S    S   L   GI+ I +    FG  F++   S I  +  L         + + +
Sbjct: 153 DLNSFLSKSGDLLGNAGINLIFQSIGIFGT-FINAITSFIMALYLLANKETHLRQLKKIV 211

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                +        I             G  +       ++ + + ++G+P    L  I 
Sbjct: 212 TFFFGYKESLVIFDIGAEANHYFNGFVSGQLLECCILTSLMYAGFKISGMPFPELLAFII 271

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I +++P         +S  L++      A    L   I        + P +VGG + + 
Sbjct: 272 GIASLVPMFGGFVGFGISFVLVLAVEPTQAIIFTLCFVIIQQFEANIIYPRVVGGAVGIS 331

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            +     LV     +G  GL I    MALI  +
Sbjct: 332 GVYVLLSLVIFGNLLGFFGLLIAVPSMALIYAV 364


>gi|295687537|ref|YP_003591230.1| hypothetical protein Cseg_0085 [Caulobacter segnis ATCC 21756]
 gi|295429440|gb|ADG08612.1| protein of unknown function UPF0118 [Caulobacter segnis ATCC 21756]
          Length = 366

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/350 (12%), Positives = 113/350 (32%), Gaps = 31/350 (8%)

Query: 1   MRETMLNPQGIMRWMIMFIILVS---LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           MR    +P      +++  ++ S   LY+++    P+  A+ +            ++   
Sbjct: 1   MRAPASSPSTTRNAVVLLAVIASGAALYWMQDILTPLALAVFLAVMVDSFARVLTARVPG 60

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                A+ A V +  L      ++    +   +    ++         +   L+      
Sbjct: 61  FPARAALPAAVVISILLFGVSFWVV---IENGRGFFDQLKDYAPRLNDIIAKLAH----- 112

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIP-RFASRFGMIFLDYCLSIIFMIIALFF 176
                         ++ I     +     +  P R+  +    F ++  S + ++I L F
Sbjct: 113 --------------AVGIHVAPTIGGLINELNPQRYIGQAAQSFGNFASSAVLVLIYLGF 158

Query: 177 FYRDGFSISQQLDSLGE-HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
                   ++++ SL   H       K+ + +   +       T+  +   +   +   L
Sbjct: 159 IIASRRGFARKIVSLFPQHAEREQNMKLFQRIRDGVEQYLWIQTVTGLMIAVAAWAVMML 218

Query: 236 AGVPSHVALGVITAIMAMIPGGAPIS---FTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
             + +      +  + A IP            +   +    +++ A  LF       F+V
Sbjct: 219 VRLDNAFFWAFLIFLAAYIPILGGAIGCFLPPLFALVQFPESLWPAIILFCALQGIFFVV 278

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
              + P + G  + +        L       G+ G+F+  P+ +A++ ++
Sbjct: 279 GNVILPRMQGDSLNMDPTVVLLSLAVWGALWGVPGMFLSTPLTVAVMLIL 328


>gi|298490663|ref|YP_003720840.1| hypothetical protein Aazo_1509 ['Nostoc azollae' 0708]
 gi|298232581|gb|ADI63717.1| protein of unknown function UPF0118 ['Nostoc azollae' 0708]
          Length = 365

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/341 (13%), Positives = 117/341 (34%), Gaps = 18/341 (5%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           +++  + + +   + +  A+++ F   +PI   F  K+        V   +  + +    
Sbjct: 26  LVIQVIQYFQPLVSVISVAILLAFVLDYPI--KFFHKRGVPRNLAIVGVLLIAVVILGAV 83

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
            + L      ++ ELV+ + +    G    +   +                 P ++  L+
Sbjct: 84  GVILVPLIFQQLNELVNILPVWIDSGTKQLQVFLN---------WAATQQDLPVNISGLA 134

Query: 138 ETFLKTNGIDF--IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              L+     F         F    + + ++++  ++   +   +G  +   +       
Sbjct: 135 TQLLERISSQFQSFTGKILSFAFDTIGFLVNLLLAVVLTIYLTLNGEKLWSGIYQWFPSN 194

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 K+  ++ +  ++ F+G   +     + +  A+    +P  +  G+   I ++ P
Sbjct: 195 IS---TKVRELLKEDFQNYFIGQATLGAILAVTVTLAFVALRIPLALLFGIGIGIFSLFP 251

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G  I    VS+ L+   N +    +         I    + P ++G    L  +     
Sbjct: 252 FGTGIGIGIVSL-LVALENFWEGVEVAAIAVTIDQINSNIVAPRILGNLTGLNPVWVVIS 310

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           L+ G +  G+LGL +   + + I  I            E++
Sbjct: 311 LLIGAKLGGVLGLLVAIPIASFIKDIADSWRAGELRRVEEV 351


>gi|297196905|ref|ZP_06914302.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
 gi|197715967|gb|EDY60001.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
          Length = 416

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 61/181 (33%), Gaps = 1/181 (0%)

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           ++    +   A       ++   + +  +    FF   G         L        + +
Sbjct: 199 SDHRSVLISSAVSGAGRLVEVLTAGVLALFCSLFFVHSGDRFWSWFQELLPQRARDPFSR 258

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
             R   +       G+ I+A    +++G A ++  VP  + L ++    A IP  G+PI+
Sbjct: 259 AGRTAWRTFAGYTRGIVIVAASNAVLVGVALFVLRVPLALPLTMLEFFAAFIPLVGSPIA 318

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               ++  L       A  +     I   I    L P ++   ++L  +     ++ G  
Sbjct: 319 LGVATVVALASRGPAIAIVVLALIVIIGQIEGHVLHPLVMSWAVQLHPVIVAVSVIAGAI 378

Query: 322 T 322
            
Sbjct: 379 L 379


>gi|319410469|emb|CBY90829.1| conserved hypothetical integral membrane protein [Neisseria
           meningitidis WUE 2594]
          Length = 356

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 126/336 (37%), Gaps = 10/336 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
              ++  ++ L     P   A ++ +   P+      KK  +    ++   V  + L + 
Sbjct: 19  FAALVWLVFALGDTLTPFAVAAVLAYVLDPLVEWL-QKKGLNRASASMSVMVFSLILLLA 77

Query: 77  PLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            LL +    + +   L S++  L       +  WL +  GG      + +         +
Sbjct: 78  LLLIIVPMLVGQFNNLASRLPQLIGFMQNTLLPWLKNTIGG------YVEIDQASIIAWL 131

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            + T   +N +        R G   +    +++ + + L++F  D    S  +  L    
Sbjct: 132 QAHTGELSNALKAWFPVLMRQGGNIVSSIGNLLLLPLLLYYFLLDWQRWSCGIAKLVPRR 191

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +P
Sbjct: 192 FAGAYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLVLVGLDSGFAIGMLAGILVFVP 251

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGGPIKLPFLPTF 313
                +   ++    +         L +W    +  F+    + P +VG  I L      
Sbjct: 252 YLGAFTGLLLATVAALLQFGSWNGILSVWAVFAVGQFLESFFITPKIVGDRIGLSPFWVI 311

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           F L+   + MG +G+  G  L A+  V+ +E +   
Sbjct: 312 FSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVQKY 347


>gi|218556025|ref|YP_002388938.1| hypothetical protein ECIAI1_3621 [Escherichia coli IAI1]
 gi|293453779|ref|ZP_06664198.1| UPF0118 inner membrane protein yhhT [Escherichia coli B088]
 gi|331670300|ref|ZP_08371139.1| putative membrane protein [Escherichia coli TA271]
 gi|218362793|emb|CAR00419.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli IAI1]
 gi|291321905|gb|EFE61336.1| UPF0118 inner membrane protein yhhT [Escherichia coli B088]
 gi|331062362|gb|EGI34282.1| putative membrane protein [Escherichia coli TA271]
          Length = 349

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 115/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +       +A   V
Sbjct: 14  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVKRP-----VAITIV 68

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E +S +   N+               +       + +   
Sbjct: 69  VVVMLITLTALVGVLAASFNEFISMLPKFNKE--------------LTRKLFKLQEMLPF 114

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++  
Sbjct: 115 LNLHMSPERMLQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKM-R 173

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+  +
Sbjct: 174 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGVIVWLGLELMGVQFALMWAVLAFL 232

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA IS     I +L+   I+    +     +   ++   L P ++G  + +  
Sbjct: 233 LNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGMST 292

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 293 MVVFLSLLIWGWLLGPVGMLL 313


>gi|256826100|ref|YP_003150060.1| putative permease [Kytococcus sedentarius DSM 20547]
 gi|256689493|gb|ACV07295.1| predicted permease [Kytococcus sedentarius DSM 20547]
          Length = 398

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 52/315 (16%), Positives = 105/315 (33%), Gaps = 21/315 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + II   +    G   P+  AL +  T++P+ +     K         +AT++ +     
Sbjct: 40  LVIIGAGIRSQAGMLGPMFLALTLVITAYPMVTWMRRHKVPGP-----LATLASLLAIYA 94

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L  + +  +  +  LV            +P ++     G    +     L+     +  
Sbjct: 95  VLAAIAWSMVWSVLRLVE----------VMPEYVEQ---GTQLYDQTISQLARYGVEESQ 141

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            E  L       +                 +  ++I L F   D  S+  ++  L +   
Sbjct: 142 LEDLLTNVEPGQVAGVVRNLAGQLSGGASLLTLLVIGLIFLVLDTGSMEARMRVLADQ-- 199

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
                       + +RS +L  T+  I   LV     W  G+P  +  GV + +   IP 
Sbjct: 200 RPGAAAAFGDFARRVRSYWLVTTVFGILVALVDVVFLWALGIPLAITWGVFSFVTNYIPN 259

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G  +     ++  L++   F A  + +      F+    ++P + G  + L     F  
Sbjct: 260 VGFVLGLIPPTLIALLEKGPFIAVVVAVGYWAINFVFQTIIQPRVTGDMVGLNATVIFVS 319

Query: 316 LVGGVRTMGLLGLFI 330
           L+     +G LG  +
Sbjct: 320 LIVWAYLLGPLGALV 334


>gi|325202087|gb|ADY97541.1| putative membrane protein [Neisseria meningitidis M01-240149]
 gi|325208159|gb|ADZ03611.1| putative membrane protein [Neisseria meningitidis NZ-05/33]
          Length = 356

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 127/336 (37%), Gaps = 10/336 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
              ++  ++ L     P   A ++ +   P+      KK  +    ++   V  + L + 
Sbjct: 19  FAALVWLIFALGDTLTPFAVAAVLAYVLDPLVEWL-QKKGLNRASASMSVMVFSLILLLA 77

Query: 77  PLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            LL +    + +   L S++  L +     +  WL +  GG      + +         +
Sbjct: 78  LLLIIVPMLVGQFNNLASRLPQLISFMQNTLLPWLKNTIGG------YMEIDQASIIAWL 131

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            + T   +N +        R G   +    +++ + + L++F  D    S  +  L    
Sbjct: 132 QAHTGELSNALKAWFPVLMRQGGNIVSSIGNLLLLPLLLYYFLLDWQRWSCGIAKLVPRR 191

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +P
Sbjct: 192 FAGAYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLVLVGLDSGFAIGMVAGILVFVP 251

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGGPIKLPFLPTF 313
                +   ++    +         L +W    +  F+    + P +VG  I L      
Sbjct: 252 YLGAFTGLLLATVAALLQFGSWNGILSVWAVFAVGQFLESFFITPKIVGDRIGLSPFWVI 311

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           F L+   + MG +G+  G  L A+  V+ +E +   
Sbjct: 312 FSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVQKY 347


>gi|293416878|ref|ZP_06659515.1| inner membrane protein yhhT [Escherichia coli B185]
 gi|291431454|gb|EFF04439.1| inner membrane protein yhhT [Escherichia coli B185]
          Length = 349

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/321 (13%), Positives = 115/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +       +A   V
Sbjct: 14  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVKRP-----VAITIV 68

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E +S +   N+               +       + +   
Sbjct: 69  VVVMLITLTALVGVLAASFNEFISMLPKFNKE--------------LTRKLFKLQEMLPF 114

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++  
Sbjct: 115 LNLHMSPERMLQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKM-R 173

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+  +
Sbjct: 174 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGVIVWLGLELMGVQFALMWAVLAFL 232

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA IS     I +L+   ++    +     +   ++   L P ++G  + +  
Sbjct: 233 LNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMST 292

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 293 MVIFLSLLIWGWLLGPVGMLL 313


>gi|262198519|ref|YP_003269728.1| hypothetical protein Hoch_5351 [Haliangium ochraceum DSM 14365]
 gi|262081866|gb|ACY17835.1| protein of unknown function UPF0118 [Haliangium ochraceum DSM
           14365]
          Length = 364

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/338 (11%), Positives = 101/338 (29%), Gaps = 13/338 (3%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +  +++ +L      + + +++      +                 +  + ++ LF +
Sbjct: 23  VVVAYLAIGYLSQVVLVIFAGVLLAVFLDGLTRLLCRHTPLPRWLSLTLVCLGLVALFAL 82

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
                   G    +++ ++V   ++        L     G   ++        P  +   
Sbjct: 83  -------AGWQSGEKIGAQVRELSERIPVALERLRSWVDGYDWAQPVVTQFDKPTEVMSK 135

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                   G D I R    F  + L    +I  ++    +           +  L     
Sbjct: 136 VAP-----GADMIGRITGVF-SVVLGAATNIFIVLFLGIYLAASPGLYVGGVAWLAPAPK 189

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               +++   + + +R    G        G+       +AGVP    LGVI   ++ IP 
Sbjct: 190 RERTRQVLAQLGRALRRWLGGRFASMAVVGVFTAVGLLIAGVPLAFILGVIAGALSFIPY 249

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             PI      + + +           +       +    + P +    + +P        
Sbjct: 250 IGPILSVVPGLLMALTIGPQTVLFALMVYFAAQLLESYLITPLIQRRVVSMPPAVLIMAQ 309

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           +      GLLG+ +   L  ++ V+ +   +     ++
Sbjct: 310 MIMGVVAGLLGVLLATPLAVVVIVLVQMLYLQDVRGED 347


>gi|254465372|ref|ZP_05078783.1| membrane protein [Rhodobacterales bacterium Y4I]
 gi|206686280|gb|EDZ46762.1| membrane protein [Rhodobacterales bacterium Y4I]
          Length = 357

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 53/330 (16%), Positives = 118/330 (35%), Gaps = 18/330 (5%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA--TVSVMCLF 74
                V ++ L     P +    I +   PI     +     +   A I   T+ V  L 
Sbjct: 16  ALAFAVVMWSLGHVLLPFILGAAIAYMIDPIADRLEAWGMSRAGATATITVGTLVVFVLL 75

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           ++ ++    Y M+++  ++ K++   ++ +         P          + ++      
Sbjct: 76  LLVVVPTLIYQMIDLANVLPKLIGDARNFVN-----ERFPAVFEQDSRIHQAITA----- 125

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                 L++  +  +   A     +     L +I  ++A++    D   +  ++D L   
Sbjct: 126 --LAETLQSRAVQVLQSVAGSAVSLLNVVVLLVIVPVVAVYMLL-DWDRMIARIDELLPR 182

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 ++++  +   + S   GM  + +  G     A  L G+   +A+G I  ++  I
Sbjct: 183 DHQPVIRRLAGDIDAALASFIRGMGTVCLILGTYYAVALMLVGLNFGLAVGFIAGLVTFI 242

Query: 255 PGGAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           P    +   A++I L +    G+  +   + L   +   +    L P LVG  + L  + 
Sbjct: 243 PYLGALIGGALAIGLALFQFWGDWVSIGLVALIFVVGQVVEGNFLTPKLVGDSVGLHPVW 302

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
               L       G +G+ I   + A + VI
Sbjct: 303 LLLALSVFGALFGFVGMLIAVPVAAALGVI 332


>gi|299783257|gb|ADJ41255.1| Permease [Lactobacillus fermentum CECT 5716]
          Length = 366

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 54/331 (16%), Positives = 117/331 (35%), Gaps = 15/331 (4%)

Query: 32  APVLSALIIGFTSWPIYSSFISK-----KEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
            P+L   +I +    +   +        K + +   A +  + +  L IV ++ +    +
Sbjct: 41  MPLLIGCVIAYIVNLLMVRYEGLYHRVFKGQRAQRFARVTALCLAYLSIVVVIGVVSSVV 100

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
                   K++ + Q  + +P++++ +    +   LW +      +   +    L     
Sbjct: 101 APQLVACVKLLFSGQSKV-IPQFINWLENESFLKSLWQQIDLSKINWTKVQSYLLNGASG 159

Query: 147 DF--IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            F  +   AS+         ++I F I  L F       ++ Q   L     P    +I 
Sbjct: 160 TFSTVMSTASKVVSALTTTVVAIFFSIYLLLFK----DRLACQFRLLLTTYLPGQVARIL 215

Query: 205 RI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           R+     +   S  +G    A+  G        +  +P    +G + A+ A++P    + 
Sbjct: 216 RVLTVFDQSFSSYIVGQVKDAVVLGCSCTVLMLILQLPYAPMVGAVMAVTALVPIIGALM 275

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
             +V I ++   +   A    +         ++   P +VG  I LP +  F  ++ G  
Sbjct: 276 GASVGIIVIFAVSPVKALIFLVMILALQEFDNRVTYPLIVGKSIGLPSVWVFVAVMVGGG 335

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             G+LG+     L A    + K  +   + N
Sbjct: 336 VSGILGMMFTVPLFAAFYQLLKTDVAKRQLN 366


>gi|254410689|ref|ZP_05024468.1| conserved domain protein, putative [Microcoleus chthonoplastes PCC
           7420]
 gi|196182895|gb|EDX77880.1| conserved domain protein, putative [Microcoleus chthonoplastes PCC
           7420]
          Length = 367

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 52/264 (19%), Positives = 97/264 (36%), Gaps = 10/264 (3%)

Query: 96  VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK--TNGIDFIPRFA 153
           +  A Q    +P W       +   +   + L+ P SL  L           +  I   +
Sbjct: 95  ITQAQQLVSRLPEWFDSGRRQLIMLDHRLEDLNLPISLDGLIIQINDRLKGQLQVIASKS 154

Query: 154 SRFGMIFLDY----CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
               +    +     L ++ +II+ F+  + G  + + L     +          R+   
Sbjct: 155 LNLTLNLAVFTVTKVLDVLLIIISTFYLLQHGREVWRSLIEWLPNKVQRSASNTLRL--- 211

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
             ++ F+G  IIA      L S + L  VP  +  G    +MA++P G  +    V++ +
Sbjct: 212 SFQNYFIGQIIIATCMASGLISLFILLKVPFGLLFGFTIGVMALVPFGGSVGIALVTLLV 271

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            ++ +I     +     +   +V+  L P + G    L     F  L+ GVR  GLLG+ 
Sbjct: 272 ALR-DIGLGVQVLAVAVVFQQLVENLLAPRIFGRVTGLNPFWVFISLLIGVRVGGLLGVI 330

Query: 330 IGPVLMALIAVIWKESIMAIKENK 353
           +      +I     E   A K+  
Sbjct: 331 VAVPTAVVIKEALVEVRKARKDRN 354


>gi|218550737|ref|YP_002384528.1| hypothetical protein EFER_3448 [Escherichia fergusonii ATCC 35469]
 gi|218358278|emb|CAQ90925.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia fergusonii ATCC 35469]
 gi|324111795|gb|EGC05775.1| hypothetical protein ERIG_03542 [Escherichia fergusonii B253]
 gi|325499023|gb|EGC96882.1| hypothetical protein ECD227_3120 [Escherichia fergusonii ECD227]
          Length = 349

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/321 (14%), Positives = 115/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +       +A   V
Sbjct: 14  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITIV 68

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E +S +   N+               +       + +   
Sbjct: 69  VVVMLIALTALVGVLAASFNEFISMLPKFNKE--------------LTRKLFKLQEMLPF 114

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L I  E  L+    + +  F +           S++ +++ + F   +   +  ++  
Sbjct: 115 LNLHISPERMLQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKM-R 173

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+  +
Sbjct: 174 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGVIVWLGLALMGVQFALMWAVLAFL 232

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA IS     I +L+   ++    +     I   ++   L P ++G  + +  
Sbjct: 233 LNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLIVHMVIGNILEPRMMGHRLGMST 292

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           L  F  L+     +G +G+ +
Sbjct: 293 LVVFLSLLVWGWLLGPVGMLL 313


>gi|159039525|ref|YP_001538778.1| hypothetical protein Sare_3997 [Salinispora arenicola CNS-205]
 gi|157918360|gb|ABV99787.1| protein of unknown function UPF0118 [Salinispora arenicola CNS-205]
          Length = 413

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 97/259 (37%), Gaps = 7/259 (2%)

Query: 96  VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASR 155
           V  +NQ     P ++  +      +EL  ++    +  +      L       +      
Sbjct: 161 VTQSNQFIEQFPNYVESLRRNETINELVERYDLMERIERAADTDTLGHALGGVLGGAQLI 220

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
           FG  F    + ++ +    +F       +     +L         + I   +   + +  
Sbjct: 221 FGTAFRTLTVLVLTVYFLAYF-----NRLRSLGYALVPRSRRDRVRLIGDEIIMKVGAYI 275

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGN 274
           +G  IIA+  G        +A +P   AL V+ A+  +IP  GA +    VS+      +
Sbjct: 276 VGALIIAVLAGTTTFVFAVIAELPYPFALAVVVAVADLIPQIGATLGAVIVSLVGFAT-D 334

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
           +       ++  I   + +  + P ++   +++  +      + GV  +G++G FI    
Sbjct: 335 LPVGIACVVFFLIYQQLENYLIYPKVMRRSVQVNEVAALVAALLGVALIGVVGAFIAIPT 394

Query: 335 MALIAVIWKESIMAIKENK 353
           +A   +I +E I+  ++++
Sbjct: 395 VAAFQLILREVIVPRQDSR 413


>gi|296533359|ref|ZP_06895959.1| protein of hypothetical function UPF0118 [Roseomonas cervicalis
           ATCC 49957]
 gi|296266314|gb|EFH12339.1| protein of hypothetical function UPF0118 [Roseomonas cervicalis
           ATCC 49957]
          Length = 642

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 59/175 (33%), Gaps = 4/175 (2%)

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           I +I+ +F   +    +  +L  L                   +   FL    I +G G 
Sbjct: 193 IVLIVTIFVLLQR-EDLRDRLIRLFGSTDLHRTTIAMDDAAYRLSRFFLAQLCINLGFGA 251

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL--FLWG 285
           ++G    + GVPS +  G++ A++  +P    I    + I L    +   +  L      
Sbjct: 252 IIGLGLLVIGVPSPLLWGLVAALLRFVPFIGGILGAVLPIGLAASVDPGWSMALWTAALF 311

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIA 339
                I    + P   G    +  +      +      G +GL I  PV + L+ 
Sbjct: 312 LAVEPIAAHVVEPLTYGHSTGMSPVSVIIAAIFWSWIWGPIGLLIATPVTLCLVV 366


>gi|21229557|ref|NP_635474.1| hypothetical protein XCC0079 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66766430|ref|YP_241192.1| hypothetical protein XC_0080 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21111025|gb|AAM39398.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66571762|gb|AAY47172.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 346

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 56/313 (17%), Positives = 91/313 (29%), Gaps = 23/313 (7%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           V  A+++      + S        S      +  V V   F   L         E+  L 
Sbjct: 36  VFGAVVVAVLLRALASWVTRYTPLSDGMALGLVVVVVAVGFTALLWLFGSQLATELGALQ 95

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             +    Q       W++  P G    EL                    +N       FA
Sbjct: 96  RTLP---QAWARFHDWVAAGPLGPALEEL------------TRQAPARVSNLAPRAGAFA 140

Query: 154 SRFGMIFLDYCLSIIFMIIALF--FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                   +  L +   +        YR G      +  L      A      R     +
Sbjct: 141 LSITGGVANLFLVLAGAVYLAAQPQLYRRG------VLLLFPVQVRATMDDAVRASGTAL 194

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R    G  +  +  G + G   W  G+P  +ALG+I  ++  +P   PI     +I L  
Sbjct: 195 RLWLRGQLLAMVVVGALTGLGLWALGIPGALALGIIAGLLDFVPIVGPILAAIPAILLGF 254

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
             +   A        +   I    L P +    + LP +   F L G    +G  G+ + 
Sbjct: 255 TVSPQMALATAALFVVVQQIEGNILLPLIQQRTVDLPPVLLLFSLFGIGTLLGPAGVLLA 314

Query: 332 PVLMALIAVIWKE 344
             L  +  V+ K 
Sbjct: 315 APLTVVAFVLVKR 327


>gi|167747114|ref|ZP_02419241.1| hypothetical protein ANACAC_01827 [Anaerostipes caccae DSM 14662]
 gi|317471931|ref|ZP_07931265.1| hypothetical protein HMPREF1011_01614 [Anaerostipes sp. 3_2_56FAA]
 gi|167654074|gb|EDR98203.1| hypothetical protein ANACAC_01827 [Anaerostipes caccae DSM 14662]
 gi|316900597|gb|EFV22577.1| hypothetical protein HMPREF1011_01614 [Anaerostipes sp. 3_2_56FAA]
          Length = 379

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/332 (14%), Positives = 110/332 (33%), Gaps = 6/332 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +  F      A II        +   SK ++    L++I  ++++C+  V  L  F   
Sbjct: 41  VIFPFIIGGCMAFIINVPMRFFETKLFSKVKKGKRALSLI--LAILCIIGVLALISFLIL 98

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL-WTKHLSHPQSLKILSETFLKTN 144
                 L S           +  +L ++      ++    K       +      F +T+
Sbjct: 99  PELANTLYSLASSIPGFVNEIKDFLQNVSDNPLLTKQNLMKIDLDWNKISTELMGFFQTS 158

Query: 145 GIDFIPRFASRFG---MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             + +    S         + + L  +F + AL    +      + L S  +  +     
Sbjct: 159 ASNILGSTVSVISSAVQTVVTFLLGTVFAVNALLKKEKLVLQTKKLLYSYLKESYADRIV 218

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            I  +  +   S   G    A+  G ++  +  +  +P  + + +   + ++IP      
Sbjct: 219 YIGNMCNQAFSSFLSGQCTEAVILGTIIFISMNILRLPYAMLIAMFIGVTSLIPILGGFI 278

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
            + +   L+   + F      +   +   I    + P +VG  + LP +     +  G  
Sbjct: 279 GSTLGAILIFMVSPFKMVIFVIMFVVVQQIEGNLIYPHVVGNSVGLPAIWVLVAVTVGGN 338

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             G+ G+FI     ++I  + + +       K
Sbjct: 339 LAGVAGMFISIPACSVIYALLRNAANERLRKK 370


>gi|299065816|emb|CBJ36994.1| putative permease transmembrane transport protein (perM) [Ralstonia
           solanacearum CMR15]
          Length = 356

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/315 (13%), Positives = 99/315 (31%), Gaps = 8/315 (2%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            P + A I+ +   P        +         +  + +M + +  +L +      E+  
Sbjct: 35  TPFVFAGILSYILHPGVEWLQRHRVPR-VLGVFLMILLLMVVAMALMLLILAVLQREIPA 93

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           +  ++                 P                + L          + +     
Sbjct: 94  IREQLPGMLSKLNAAIT-----PRLAEMGLHVRFDFPGLRKLLTEQLAASPEDVMSTALN 148

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
           +    G   +     +  + I +F+   D   + ++L+      +    ++++     ++
Sbjct: 149 YLRVSGSAAVQVLGIVFLVPIVMFYLLMDWNMLIRRLEGTVPRRWIGKTRELAAETDGLL 208

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS--FTAVSIYL 269
                G  I+ +       +   LAG    + +G+ T +   IP          A+   L
Sbjct: 209 SQYLRGQIIVMLVLAAYYSTGLALAGFDVALPIGIFTGLAVFIPYIGFGIGLILAILSAL 268

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           L  GN++    + +   +   +    L P LVG  I L  L     L+   +  G  G+ 
Sbjct: 269 LQFGNLYGLLAVAVVYGVGQVLEGFYLTPRLVGERIGLHPLAVILALLAFGQLFGFFGIL 328

Query: 330 IGPVLMALIAVIWKE 344
           +   + A++ V  ++
Sbjct: 329 LALPISAVLLVGLRQ 343


>gi|161870063|ref|YP_001599232.1| transporter, putative [Neisseria meningitidis 053442]
 gi|161595616|gb|ABX73276.1| transporter, putative [Neisseria meningitidis 053442]
          Length = 356

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 126/336 (37%), Gaps = 10/336 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
              ++  ++ L     P   A ++ +   P+      KK  +    ++   V  + L + 
Sbjct: 19  FAALVWLVFALGDTLTPFAVAAVLAYVLDPLVEWL-QKKGLNRASASMSVMVFSLILLLA 77

Query: 77  PLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            LL +    + +   L S++  L       +  WL +  GG      + +         +
Sbjct: 78  LLLIIVPMLVGQFNNLASRLPQLIGFMQNTLLPWLKNTIGG------YMEIDQASIIAWL 131

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            + T   +N +        R G   +    +++ + + L++F  D    S  +  L    
Sbjct: 132 QAHTGELSNALKAWFPVLMRQGGNIVSSIGNLLLLPLLLYYFLLDWQRWSCGIAKLVPRR 191

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +P
Sbjct: 192 FAGAYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLVLVGLDSGFAIGMVAGILVFVP 251

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGGPIKLPFLPTF 313
                +   ++    +         L +W    +  F+    + P +VG  I L      
Sbjct: 252 YLGAFTGLLLATVAALLQFGSWNGILSVWAVFAVGQFLESFFITPKIVGDRIGLSPFWVI 311

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           F L+   + MG +G+  G  L A+  V+ +E +   
Sbjct: 312 FSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVQKY 347


>gi|110643716|ref|YP_671446.1| hypothetical protein ECP_3569 [Escherichia coli 536]
 gi|117625751|ref|YP_859074.1| hypothetical protein APECO1_2980 [Escherichia coli APEC O1]
 gi|191170454|ref|ZP_03032007.1| putative membrane protein [Escherichia coli F11]
 gi|218560542|ref|YP_002393455.1| hypothetical protein ECS88_3877 [Escherichia coli S88]
 gi|218691759|ref|YP_002399971.1| hypothetical protein ECED1_4147 [Escherichia coli ED1a]
 gi|110345308|gb|ABG71545.1| putative membrane protein [Escherichia coli 536]
 gi|115514875|gb|ABJ02950.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|190909262|gb|EDV68848.1| putative membrane protein [Escherichia coli F11]
 gi|218367311|emb|CAR05089.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli S88]
 gi|218429323|emb|CAR10282.2| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli ED1a]
 gi|294490797|gb|ADE89553.1| putative membrane protein [Escherichia coli IHE3034]
 gi|307555568|gb|ADN48343.1| predicted inner membrane protein [Escherichia coli ABU 83972]
 gi|307628547|gb|ADN72851.1| inner membrane protein YhhT [Escherichia coli UM146]
 gi|323950142|gb|EGB46025.1| hypothetical protein ERKG_03551 [Escherichia coli H252]
 gi|323954770|gb|EGB50551.1| hypothetical protein ERLG_03983 [Escherichia coli H263]
          Length = 349

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 114/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +       +A   V
Sbjct: 14  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITIV 68

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E +S +   N+                       + +   
Sbjct: 69  VVVMLIALTALVGVLAASFNEFISMLPRFNKELT--------------RKLFKLQEMLPF 114

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++  
Sbjct: 115 LNLHMSPERILQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMR- 173

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+  +
Sbjct: 174 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGIIVWLGLELMGVQFALMWAVLAFL 232

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA IS     I +L+   I+    +     +   ++   L P ++G  + +  
Sbjct: 233 LNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGMST 292

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 293 MVVFLSLLIWGWLLGPVGMLL 313


>gi|256053066|ref|XP_002570030.1| strawberry notch-related [Schistosoma mansoni]
 gi|227287385|emb|CAY17644.1| strawberry notch-related [Schistosoma mansoni]
          Length = 1115

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 89/240 (37%), Gaps = 10/240 (4%)

Query: 127  LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI-- 184
            ++      + S   L    I  +       G + +++ ++ +  +  L++      S   
Sbjct: 766  ITESLWSLMRSNVNLIAQLITTLISLIMSGGHVAMNFVIAFLIFLTVLYYVLAASGSCYL 825

Query: 185  -SQQLDSLGEHLFPAY--WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
                + SL             +   V   I   F+    +A+  GL     + + G+   
Sbjct: 826  PVAFISSLTPTFTGTNSLITHLYSTVESAISGVFVATLKLALFYGLYTSLTHIIFGLDLV 885

Query: 242  VALGVITAIMAMIPG-GAPISFTAVSI-YLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +   V+ AI+  +P  G   +    +I  ++I+ ++  A  L  +  +  ++VD ++   
Sbjct: 886  IIPSVLAAILGAVPIIGTYWAVLPGAIEIIIIRQSLSQAGLLIFFHVLPTYVVDVSVYRE 945

Query: 300  LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            + G         T   + GG+   G  G  IGP+L+    V       A+  +K  ++++
Sbjct: 946  IKGAG---HPYFTGLAIAGGIYCQGPEGAIIGPILLCCFLVGINMFRWAMDSSKNALAAD 1002


>gi|328883612|emb|CCA56851.1| putative integral membrane protein [Streptomyces venezuelae ATCC
           10712]
          Length = 352

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 57/355 (16%), Positives = 121/355 (34%), Gaps = 27/355 (7%)

Query: 9   QGIMRWMIMFII-----LVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESST 60
           + I  W ++ ++      V ++    F     PVL A++      P++   + +    ++
Sbjct: 13  RRIAAWCVVLLLAAGVAAVGIWLCAVFRTAVTPVLLAILGTALLGPLHRRLV-RLGVRTS 71

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A +  V+V+ +       +    +    ++V+ +  A                     
Sbjct: 72  LAAALTVVAVLAVVGGATYIVVAALIETGDQIVASLRQAATD------------IAEHLG 119

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
              T      ++ K L E F  T     I   +     +  +   + +  ++ +FFF RD
Sbjct: 120 AAGTSLDDLAKNAKSLLEKFGGTAASGVISGIS-----VVGEMLATAVLALLLMFFFLRD 174

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
               +  L SL         + ++R   + +     G T++A+ + +++G    +  VP 
Sbjct: 175 SDRAAGALRSLVPRTTGDLVEAMARRAFEAVEGFMRGTTLVALVDAVLIGVGLVVLDVPG 234

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            V L  +  + A IP  GA +S     +  L       A  +         I    L+P 
Sbjct: 235 AVGLAALVFVTAYIPYLGAFLSGAIAVLVALADRGFVIALWVLGIVLAVQVIEGNVLQPM 294

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           +    +++        +  G    G+LG+ +   L A    +  E         E
Sbjct: 295 VQSRTVQMHPAAVMLAITAGASVAGVLGMLLAVPLTAAATGVLGELRTRYGARPE 349


>gi|320457519|dbj|BAJ68140.1| putative transport protein [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 515

 Score = 66.8 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 71/212 (33%), Gaps = 2/212 (0%)

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           ++T+ +      A         + L+++ +++  ++    G  + +             +
Sbjct: 140 IQTSWVTDFAGTAMSTVGGLFSFLLNLMTVVMTTYYISAAGPKLRRSFCQWLAPNTQRRF 199

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA-MIP-GGA 258
             +  +    I S     +I+A+   +       +  VP  + L +   +++  IP  G 
Sbjct: 200 LLVWTVAQGQISSFLFSRSILALINAICTAIFLEILHVPYWLPLALFCGVVSQFIPTVGT 259

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            I      ++         A  + ++  +   I +  L P +    + +     F  ++ 
Sbjct: 260 YIGGALPVLFAWGNRGWTYAVAVLVFIIVYQQIENLILSPRISQRTMDINAAVAFLSVLA 319

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
                G  G F+   + A +  I++      +
Sbjct: 320 FGSLFGAFGAFLALPVTASLQAIFRAYTKRYE 351


>gi|311694920|gb|ADP97793.1| permease perM [marine bacterium HP15]
          Length = 359

 Score = 66.8 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 50/356 (14%), Positives = 119/356 (33%), Gaps = 16/356 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + + ++ ++I+    + + +     AP +++LI+ F    + +            +++I 
Sbjct: 15  DEEAVILFLILVTGTIFVIWFGAMLAPAIASLIVAFILQGLVTKLNKL--GVPETVSIIG 72

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
              V    +V  LF     +             +      PR + ++   +        H
Sbjct: 73  VFLVFLGVLVGFLFGLLPLI---------WTQLSNLAGEAPRIIRELQSYLELLPQQYPH 123

Query: 127 LSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           L   +++  +        G    ++  F+       +   + ++ + I +FFF +D   +
Sbjct: 124 LISGEAVSTVYSQVSTEVGHMTQWLVSFSLSSIPDLVALLIYMVLVPILVFFFLKDREVL 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              +  L     P    +I   V     +   G  +  +  G     A+ L G+P    L
Sbjct: 184 LNSIARLLPPQRPMML-QIWHEVNLQCANYVRGKAVEILIVGGATYIAFKLLGMPYAALL 242

Query: 245 GVITAIMAMIP-GGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            ++  +  +IP  GA +    V++  L   G       + +   +   +    L P L  
Sbjct: 243 SLLVGLSVVIPYIGAAVVTIPVAVIALFAFGWGSQFIWVMVIYGVIQALDGNVLVPILFS 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
               L  +     ++      GL G+F    L  ++  ++    +       +  S
Sbjct: 303 EVNNLHPVAIIVAVLFFGGIWGLWGVFFAIPLATMLKAVFAAWPVKESAPPAEPGS 358


>gi|254447267|ref|ZP_05060734.1| permease PerM [gamma proteobacterium HTCC5015]
 gi|198263406|gb|EDY87684.1| permease PerM [gamma proteobacterium HTCC5015]
          Length = 354

 Score = 66.8 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 73/220 (33%), Gaps = 4/220 (1%)

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                L       + + G  F+    +  G   + + + +I +   +FF  +D   I   
Sbjct: 124 QQMAELIDSLRGEIGSLGQSFVSFSIASAG-NLITFGIYLILVPTLMFFMLKDKAQILDW 182

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +         +  K++   V   I +   G  I       V  + +++ G+   + L  +
Sbjct: 183 MRGFMPD-NRSLIKEVWHEVDIKIGNYVRGKFIEIGIIWAVSYATFFVMGLNYALLLSAL 241

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPI 305
             +  +IP  GA      V++    +  +       L     + ++D   L P L    +
Sbjct: 242 VGVSVIIPYIGAIAVTIPVALIAFFQWGVSAELLYLLIAYQVIQVLDGNVLVPVLFSEVV 301

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L  +     +V      G  G+F    L  L+  + K  
Sbjct: 302 NLHPVAIIAAVVFFGGIWGAWGVFFAIPLATLVQAVLKAW 341


>gi|32477422|ref|NP_870416.1| permease [Rhodopirellula baltica SH 1]
 gi|32447973|emb|CAD77493.1| predicted permease [Rhodopirellula baltica SH 1]
          Length = 435

 Score = 66.8 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 49/338 (14%), Positives = 111/338 (32%), Gaps = 13/338 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G++  +   + L  LY       P+  A +   +  PI +             A    +
Sbjct: 68  RGMVTAIAAILTLGMLYIASDLLVPIAIAALAYLSLRPIEAKICR--WGVPQAAASAMLI 125

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           + +   +  ++ L Y    +       +  A +    +      +   + A +     + 
Sbjct: 126 AGLFSSLALIIALLYSPAQQ------WLTSAPESLAAIRGKFQSVAEPLTAVDRAGTAVD 179

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                    E  ++           +            +  + +  FF    G  +  + 
Sbjct: 180 DATIPLKEDEPRIEVAYQKPSIVDETVLINQTGQMLAFVAAIAVLTFFMLSTGDDLLNRT 239

Query: 189 DSLGE--HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
             +           KKI   + + +      +T I IG G+ +    WL G+P+ V  GV
Sbjct: 240 LGVLPNSRSRGEVLKKIGD-IQQSVGRYLAQITCINIGLGVAVTFVMWLVGMPTPVLWGV 298

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDK-TLRPFLVGGP 304
           + A+   IP   P++ T++         +  +  CL  +       V+   + P ++G  
Sbjct: 299 MAALFNFIPYVGPLAATSIVFLAAASSFDTMSRACLTAFAFWLTTAVEGQFVTPTILGKT 358

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +K+  +     +       GL G+F+   L+ +   I+
Sbjct: 359 LKVGPVVVLIAVAFWGFLWGLSGVFLAVPLLIVQRKIF 396


>gi|229011253|ref|ZP_04168446.1| UPF0118 membrane protein [Bacillus mycoides DSM 2048]
 gi|228750136|gb|EEL99968.1| UPF0118 membrane protein [Bacillus mycoides DSM 2048]
          Length = 339

 Score = 66.8 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 116/338 (34%), Gaps = 19/338 (5%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +G  R++++ I+ + LY LK     +L   I+ F           K + +   +    
Sbjct: 9   RSRGFQRFLVLIILALVLYGLKSMINLILITFILTFLMDRFQKFISKKLKVNRKVVIACL 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++   +  L        +++ +L+ +  L  QH  P    +  +   +   E+    
Sbjct: 69  YIVLVTFIVTTLYKYLPVLTIQISQLIYQFKLFFQH-PPDNEMIRYVLSAINEMEVSKYI 127

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                 +        K +    +    S F ++  +  +S                    
Sbjct: 128 EQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKERIISFT-------------SKFKD 174

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
               +       + ++ +R   KVI + F    +IA+   ++   A  + G P  + L V
Sbjct: 175 SKLKIFYEEIAYFGERFARSFGKVIEAQF----LIAVVNCVLTVIALVILGFPQLLVLAV 230

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +  ++ +IP  G  IS   + I     G +     + ++  +   +    L P  +    
Sbjct: 231 MVFLLGLIPVAGVIISLFPLCIIAYNVGGVMYVVYILVFITVIHALESYFLNPKFMSAKT 290

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            LP   TF  L+     +G+ GL IG  +   +  +  
Sbjct: 291 NLPVFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLD 328


>gi|229059620|ref|ZP_04196998.1| UPF0118 membrane protein [Bacillus cereus AH603]
 gi|228719633|gb|EEL71232.1| UPF0118 membrane protein [Bacillus cereus AH603]
          Length = 339

 Score = 66.8 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 117/338 (34%), Gaps = 19/338 (5%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +G  R++++ I+++ LY LK     +L   I+ F           K + +   +    
Sbjct: 9   RSRGFQRFLVLIILVLVLYGLKSMINLILITFILTFLMDRFQKFISKKLKVNRKVVIACL 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++   +  L        +++ +L+ +  L  QH  P    +  +   +   E+    
Sbjct: 69  YIVLVTFIVTTLYKYLPVLTIQISQLIYQFKLFFQH-PPDNEMIRYVLSAINEMEVSKYI 127

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                 +        K +    +    S F ++  +  +S                    
Sbjct: 128 EQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKERIISFT-------------SKFKD 174

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
               +       + ++ +R   KVI + F    +IA+   ++   A  + G P  + L V
Sbjct: 175 SKLKIFYEEIAYFGERFARSFGKVIEAQF----LIAVVNCVLTVIALVILGFPQLLVLAV 230

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +  ++ +IP  G  IS   + I     G +     + ++  +   +    L P  +    
Sbjct: 231 MVFLLGLIPVAGVIISLFPLCIIAYNVGGVMYVVYILVFITVIHALESYFLNPKFMSAKT 290

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            LP   TF  L+     +G+ GL IG  +   +  +  
Sbjct: 291 NLPVFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLD 328


>gi|89054705|ref|YP_510156.1| hypothetical protein Jann_2214 [Jannaschia sp. CCS1]
 gi|88864254|gb|ABD55131.1| protein of unknown function UPF0118 [Jannaschia sp. CCS1]
          Length = 374

 Score = 66.8 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 52/341 (15%), Positives = 113/341 (33%), Gaps = 20/341 (5%)

Query: 13  RWMIMFIILVSLYFLK------GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           R  I  I +  L  L+       F  PV++A +  F        +++K        A   
Sbjct: 22  RIEIPLIGIFCLLLLQALVSGSDFLVPVIAAFLGYFVLNRP-RRWLAKLGVIPVVSAAFF 80

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           T ++    +V L+ L       +++L S +    +        L  I           + 
Sbjct: 81  TTALTAAIVVLLVQLSSPAAQFLEDLPSLIEEIKEKLDAAGGPLESI----------NQA 130

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
               + +    E       +      A+    +   +   I F +I LFF    G     
Sbjct: 131 ADAAEEIIADQEADTVAVEVVSQTGVAATIFSLAPGFLSRIGFALILLFFLVASGDMFLT 190

Query: 187 QLDSLGEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +     ++        +I   +   +     G+TII  G G+ +G A  L G+P  +  G
Sbjct: 191 KTVQSFDNFSDKRRAVEILHRIEDRLGYYLGGITIINAGLGVAIGLAMQLWGLPGAILFG 250

Query: 246 VITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            +   +  +P    +  +  A ++  +     + A  +F        +  + + P ++  
Sbjct: 251 FMAFGLNYVPFLGGLMGATIAAAVAFVSLDATWAAAGVFASYVALTSVEGQLVTPMVISR 310

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +KL     F  +        ++G+ +   ++ +  +   E
Sbjct: 311 RMKLNTTVVFLSVAFFAWIWSVMGMVVALPILIVTKIACDE 351


>gi|326563941|gb|EGE14191.1| hypothetical protein E9O_07758 [Moraxella catarrhalis 12P80B1]
          Length = 385

 Score = 66.8 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 57/341 (16%), Positives = 123/341 (36%), Gaps = 5/341 (1%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPI--YSSFISKKEESSTF 61
           T      I   + + ++L+S Y+L   +  V +++++      +  Y + I    +    
Sbjct: 3   TQEQKSFIFMTVAVVLMLLSFYYLIHVWLIVFASILMAVWLLSLVEYLTLIPWVGQYLKK 62

Query: 62  LA--VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
           L   ++ T+ +M L  V       +G     +L +  +L  Q    + ++L+       A
Sbjct: 63  LPHGILLTMVLMGLVGVLSTLAALFGHELALQLENLKLLVPQAFEYMNQYLTQYLQTHPA 122

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              W   L   + L+   + FL       +    +  G +       ++  II LF    
Sbjct: 123 VYEWLAGLEWARELRDNPQQFLTRFSDGAMAYLPTYLGGMVSGMGTLVVITIIGLF-LAI 181

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
                 +   ++         + +     + ++   LG  ++    G+  G A WL G+P
Sbjct: 182 SPSVYRRSFVAMVPKDSRDKAEYLLDRSYRSMQQWLLGQLVVMAFVGIATGIALWLMGIP 241

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             +ALG I  ++  +P   P       + L +  +      + L   +   +    + P 
Sbjct: 242 FALALGFIAFLLDFVPVLGPWLSAIPILLLTLIVSPKMLLWVALMIVVVQQLESYVISPI 301

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           +    + LP +      V      G+LG+ +   LM ++ V
Sbjct: 302 VQNRMVDLPPVALLLSQVIMGSITGILGIALATPLMVMVIV 342


>gi|241710578|ref|XP_002412051.1| transmembrane protein, putative [Ixodes scapularis]
 gi|215505112|gb|EEC14606.1| transmembrane protein, putative [Ixodes scapularis]
          Length = 968

 Score = 66.8 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 71/191 (37%), Gaps = 6/191 (3%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
           G   L++ L+ +  + ALF+  R      + LD     + P    ++   V + +   F 
Sbjct: 697 GTAVLNFVLNFVVFLTALFYLLRASGERYKPLDLFA-SMLPGSASRLGEAVEEAVAGVFA 755

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI-KGN 274
               +A   GL     + L  V        + ++   +P  GA  +     + L + +G 
Sbjct: 756 ASFKMAAFYGLYTWLIHTLFEVKMVYIPTALASLFGAVPFIGAYWACLPAVLELWLVQGQ 815

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
           +  A C+ L        VD  +   + GG        T   + GGV  +G  G   GP+L
Sbjct: 816 VVKALCMLLCQLAPTSFVDCAIYSEIKGGG---HPFLTGLAIAGGVFCLGFQGALFGPML 872

Query: 335 MALIAVIWKES 345
           + ++ V     
Sbjct: 873 LCVLIVAMNMY 883



 Score = 36.7 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 1  MRETMLNPQGIMRWMIMFIILVSLYF-LKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
          +++ + N   I+    + +  V++YF L+ F  P+L A++ G    P   S       
Sbjct: 27 LKQAVYNTATILFAAFVSVAGVAVYFILRPFLGPLLWAVLFGSVLHPFKRSLCLLLGG 84


>gi|15677092|ref|NP_274244.1| putative transporter [Neisseria meningitidis MC58]
 gi|7226458|gb|AAF41601.1| putative transporter [Neisseria meningitidis MC58]
 gi|261392518|emb|CAX50073.1| conserved hypothetical integral membrane protein [Neisseria
           meningitidis 8013]
 gi|316985071|gb|EFV64024.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
 gi|325140551|gb|EGC63072.1| putative membrane protein [Neisseria meningitidis CU385]
 gi|325198350|gb|ADY93806.1| putative membrane protein [Neisseria meningitidis G2136]
 gi|325200151|gb|ADY95606.1| putative membrane protein [Neisseria meningitidis H44/76]
          Length = 356

 Score = 66.8 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 126/336 (37%), Gaps = 10/336 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
              ++  ++ L     P   A ++ +   P+      KK  +    ++   V  + L + 
Sbjct: 19  FAALVWLVFALGDTLTPFAVAAVLAYVLDPLVEWL-QKKGLNRASASMSVMVFSLILLLA 77

Query: 77  PLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            LL +    + +   L S++  L       +  WL +  GG      + +         +
Sbjct: 78  LLLIIVPMLVGQFNNLASRLPQLIGFMQNTLLPWLKNTIGG------YVEIDQASIIAWL 131

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            + T   +N +        R G   +    +++ + + L++F  D    S  +  L    
Sbjct: 132 QAHTGELSNALKAWFPVLMRQGGNIVSSIGNLLLLPLLLYYFLLDWQRWSCGIAKLVPRR 191

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +P
Sbjct: 192 FAGAYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLVLVGLDSGFAIGMLAGILVFVP 251

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGGPIKLPFLPTF 313
                +   ++    +         L +W    +  F+    + P +VG  I L      
Sbjct: 252 YLGAFTGLLLATVAALLQFGSWNGILSVWAVFAVGQFLESFFITPKIVGDRIGLSPFWVI 311

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           F L+   + MG +G+  G  L A+  V+ +E +   
Sbjct: 312 FSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVQKY 347


>gi|261221912|ref|ZP_05936193.1| permease [Brucella ceti B1/94]
 gi|260920496|gb|EEX87149.1| permease [Brucella ceti B1/94]
          Length = 224

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 58/173 (33%), Gaps = 3/173 (1%)

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
            +D     +   +  F+   D   +   +DS          ++I+R +   +     G  
Sbjct: 1   MIDIAGLFVVTPVVAFYMLLDWDRMVNSIDSWVPRKQLHTVRRIAREMNAAVAGFIRGQG 60

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG---NIF 276
            + +  G        L G+   + +G    +++ IP        A++I + +     +  
Sbjct: 61  TLCLILGTYYAIGLTLTGLNFGLLIGFFAGLISFIPYIGSFVGLALAIGVALVQFWPDWI 120

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
               +     +  FI    L+P LVG  + L  +   F L       G  G+ 
Sbjct: 121 MVCTVAAVFFLGQFIEGNILQPKLVGSSVGLHPVWLMFALFAFGSLFGFTGML 173


>gi|182417076|ref|ZP_02948454.1| permease [Clostridium butyricum 5521]
 gi|237668835|ref|ZP_04528819.1| permease [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182379085|gb|EDT76589.1| permease [Clostridium butyricum 5521]
 gi|237657183|gb|EEP54739.1| permease [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 389

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 45/343 (13%), Positives = 115/343 (33%), Gaps = 12/343 (3%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTS---------WPIYSSFISKKEESSTFLAVI 65
           M++  I   +  L+ F      A I+ F           +        K+        ++
Sbjct: 35  MLLGKISGVIGILQPFIIGFSIAYILNFILRFFERTIFDFEFVKKLEFKRNSKRAIGLLV 94

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
                  +  + + F+    M  +  L++ + +         +++ D+   +     +  
Sbjct: 95  TYFVSFIVLYLFIKFVLPQLMDSIVGLINDIPMYISKTT---KFIDDLLLKLNIERQYLD 151

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            ++   +  I       T+ +  +    +       +  L II  I  L    +      
Sbjct: 152 LINENFNRFIDYVIRFVTDLLPILGTLLTSVASKIWNIVLGIIISIYLLSDKEKFCALSK 211

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +   ++          +I+           +G  + ++  G++      ++ +P  + + 
Sbjct: 212 KITYAVFPKAVAEKSIEITHRSNSTFGKFLVGKILDSVIIGILTFFILTVSKMPYAILIS 271

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           VI  I  +IP   P      S  +++  +   A    +   +   I    + P ++G  I
Sbjct: 272 VIVGITNIIPFFGPFIGAIPSFIIILFVSPVKALWFLVIILVIQQIDGNIIGPKILGDSI 331

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            +      F ++   + +GL+G+ IG  L A++  + KE +  
Sbjct: 332 GVSAFWILFAILVAGKFLGLVGMIIGVPLFAVVYSLLKEIVEG 374


>gi|193061710|ref|ZP_03042807.1| putative membrane protein [Escherichia coli E22]
 gi|194427052|ref|ZP_03059604.1| putative membrane protein [Escherichia coli B171]
 gi|260846258|ref|YP_003224036.1| putative inner membrane protein [Escherichia coli O103:H2 str.
           12009]
 gi|192932500|gb|EDV85097.1| putative membrane protein [Escherichia coli E22]
 gi|194415013|gb|EDX31283.1| putative membrane protein [Escherichia coli B171]
 gi|257761405|dbj|BAI32902.1| predicted inner membrane protein [Escherichia coli O103:H2 str.
           12009]
 gi|323162714|gb|EFZ48553.1| hypothetical protein ECE128010_1120 [Escherichia coli E128010]
          Length = 349

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 45/321 (14%), Positives = 115/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +       IA   V
Sbjct: 14  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----IAITIV 68

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E +S +   N+               +       + +   
Sbjct: 69  VVVMLIALTALVGVLAASFNEFISMLPKFNKE--------------LTRKLFKLQEMLPF 114

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++  
Sbjct: 115 LNLHMSPERMLQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKM-R 173

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+  +
Sbjct: 174 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGVIVWLGLELMGVQFALMWAVLAFL 232

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA IS     I +L+   I+    +     +   ++   L P ++G  + +  
Sbjct: 233 LNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGMST 292

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 293 MVVFLSLLIWGWLLGPVGMLL 313


>gi|330982824|gb|EGH80927.1| hypothetical protein PSYAP_30563 [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 277

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 98/254 (38%), Gaps = 11/254 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +++  +  L     P L AL++ +   P+                   T+SV+ +F +
Sbjct: 13  LALLVAFVVLLHPILTPFLVALLLAYMGDPLVDRLERAGLSR--------TLSVVVVFGL 64

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLK 134
             L L    ++ +  L  ++    +    +  WL    +P       L        +   
Sbjct: 65  FTLVLMALLLILVPMLAKQLFRLYELAPQILDWLQHAALPWVQAKFGLADGFWKFDKIKA 124

Query: 135 ILSETFLKT-NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            +SE   +  + +  +   A+   +  + +  +++ + +  F+  RD   ++ ++  L  
Sbjct: 125 AISEHMGQAGDIVSIVLSQATASSLALIGWLTNLVLIPVVCFYLLRDWDIMTGKIRGLLP 184

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
               A   K++    +V+ +   G  ++ +G G++  +   L G+   + +GVI  + A+
Sbjct: 185 RQREAQIVKLAGECHEVLGAFIRGQLLVMVGLGVIYAAGLMLVGLELGLLIGVIAGLAAI 244

Query: 254 IPGGAPISFTAVSI 267
           +P    +     ++
Sbjct: 245 VPYMGFVIGIGSAL 258


>gi|183220231|ref|YP_001838227.1| putative permease protein [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189910349|ref|YP_001961904.1| permease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167775025|gb|ABZ93326.1| Permease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167778653|gb|ABZ96951.1| Putative permease protein [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 352

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 57/347 (16%), Positives = 125/347 (36%), Gaps = 12/347 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +     +I   IL+ +  +K    P+L + I  +    +   F S+    +  + VI T 
Sbjct: 14  RSAFFGLIALTILIGIVGVKFLAIPLLISGIHFYIFHGVVDYFESRGIHRAITIIVIFTF 73

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +   +   L F       + + +VS+  +            + +P      ELW K ++
Sbjct: 74  LITFAYWF-LAFYLPNLFEKAQPIVSEWSIKMDDPNFQLLDFTKLPVVSKNPELWKKIIN 132

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             +         +     + +  F     ++   +   +I + I  FF   D   I + +
Sbjct: 133 PEE---------IAKLATNNLEEFLRSIVVMIPTFISWMIIIPIISFFLLLDANVIYKTM 183

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S   + F   +  +   + + I S    + I      LV    ++  G+   V  GV  
Sbjct: 184 ISFIPNRFFEMFLMVFYRMNQQITSYLKSLVIQCGIMALVSSIGFYFIGMKFFVLFGVFL 243

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK-TLRPFLVGGPIK 306
            +   IP  G  I      ++ ++   +  +        I   +VD   ++P ++   + 
Sbjct: 244 GVANSIPYLGPLIGAIPPILFAILFPEMSPSIGSIASVVIVAQLVDNAIVQPVVIANAVS 303

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L  L    G+  G    G+ G+ +   +++++ V       A+KE++
Sbjct: 304 LHPLAILIGIAVGGNFFGIFGMLLAIPVLSILKVTIGILYHALKEHQ 350


>gi|119025423|ref|YP_909268.1| hypothetical protein BAD_0405 [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765007|dbj|BAF39186.1| hypothetical integral membrane protein [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 507

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 43/353 (12%), Positives = 110/353 (31%), Gaps = 23/353 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYF--------LKGFFAPVLSALIIGFTSWPIYSSFISK 54
           +    P+ + R ++   I + L          ++     V+ +L +     P+    +  
Sbjct: 39  DPRRPPEWLGRALLYIAIAIVLLSFCWRSWGKIEYLIIDVVISLFLALAVEPVVIPLVKH 98

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
                +F ++ A + +  L  V         + ++  L + +    Q             
Sbjct: 99  -GWKRSFASIFALLMLGVLLCVMFGLFGNLFVQQVIALCNGLPALYQQ------------ 145

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
              + ++     L    SL       ++T+ +      A      F  + L+++ +I+  
Sbjct: 146 ICDFVAQYTDFKLPEINSLGGEILKNIQTSWVTDFAGTAISTVSGFFSFLLNLMTVIMTT 205

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           F+    G  + +             +  +  +    I S      I+A+           
Sbjct: 206 FYISAAGPKLRRAACQWMAPSAQRRFLFVWTVSQTQISSFLFSRAILAVLNAFFTSICLM 265

Query: 235 LAGVPSHVALGVITAIMA-MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
              VP  + L +   +++  IP  G  I      ++      ++ A  +  +  +   I 
Sbjct: 266 ALHVPYWMPLALFCGVVSQFIPMLGTYIGGALPVLFAWGSCGLWQAIAVVAFICVYQQIE 325

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +      +    + +     F  ++      G +G F+   ++A I  I +  
Sbjct: 326 NLIFASKISRRTMDVNDAVAFLAVLAFGSLFGAIGAFLALPIVASIQTIARTY 378


>gi|254804996|ref|YP_003083217.1| hypothetical protein NMO_1025 [Neisseria meningitidis alpha14]
 gi|254668538|emb|CBA05961.1| conserved hypothetical protein [Neisseria meningitidis alpha14]
 gi|325144636|gb|EGC66935.1| putative membrane protein [Neisseria meningitidis M01-240013]
          Length = 356

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 126/336 (37%), Gaps = 10/336 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
              ++  ++ L     P   A ++ +   P+      KK  +    ++   V  + L + 
Sbjct: 19  FAALVWLVFALGDTLTPFAVAAVLAYVLDPLVEWL-QKKGLNRASASMSVMVFSLILLLA 77

Query: 77  PLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            LL +    + +   L S++  L       +  WL +  GG      + +         +
Sbjct: 78  LLLIIVPMLVGQFNNLASRLPQLIGFMQNTLLPWLKNTIGG------YVEIDQASIIAWL 131

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            + T   +N +        R G   +    +++ + + L++F  D    S  +  L    
Sbjct: 132 QAHTGELSNALKAWFPVLMRQGGNIVSSIGNLLLLPLLLYYFLLDWQRWSCGIAKLVPRR 191

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +P
Sbjct: 192 FAGAYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLVLVGLDSGFAIGMVAGILVFVP 251

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGGPIKLPFLPTF 313
                +   ++    +         L +W    +  F+    + P +VG  I L      
Sbjct: 252 YLGAFTGLLLATVAALLQFGSWNGILSVWAVFAVGQFLESFFITPKIVGDRIGLSPFWVI 311

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           F L+   + MG +G+  G  L A+  V+ +E +   
Sbjct: 312 FSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVQKY 347


>gi|251797637|ref|YP_003012368.1| hypothetical protein Pjdr2_3650 [Paenibacillus sp. JDR-2]
 gi|247545263|gb|ACT02282.1| protein of unknown function UPF0118 [Paenibacillus sp. JDR-2]
          Length = 346

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 100/259 (38%), Gaps = 6/259 (2%)

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
            VP+ +++I   +   + +     + Q  +++++T  K     F+   A  +      + 
Sbjct: 87  YVPKLINEIVDIVNNVQKFLGSAQNDQIAQVVADTLDKIEYKTFL-NSALAYAKKIGGWL 145

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP---AYWKKISRIVPKVIRSTFLGMTII 221
             I+ +I+  +FF  +   I Q  +             ++                  +I
Sbjct: 146 EIILLVILLSYFFLLERRKIVQFTEKFSNSSIGWLYLEFRYFGGKFIASFGKVLEVQLMI 205

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATC 280
           A+    +  +  W+ G P   AL ++  ++++IP    +  F  + I     G I     
Sbjct: 206 ALFNTALTIAGLWIMGFPYLFALTIMVFLLSLIPVAGVVVSFVPIGIIGYQLGGIKTVIW 265

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIA 339
           + +   +   +    L P L      LP   TFF L+     MG+ GL IG P+ M ++ 
Sbjct: 266 VIVLVLLIHALETYFLNPRLYSHKTNLPMFYTFFILILSEHYMGIWGLLIGIPIFMFMLD 325

Query: 340 VIWKESIMAIKENKEKISS 358
           V+  E   +++E  + + S
Sbjct: 326 VLKVEQADSLEEQAKPVKS 344


>gi|330909515|gb|EGH38029.1| putative PerM family permease [Escherichia coli AA86]
          Length = 349

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/323 (13%), Positives = 115/323 (35%), Gaps = 22/323 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +++   + +IL  ++        +L AL       P+ + FI +  +       +A  
Sbjct: 12  RILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAIT 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ + ++ L  L         E +S +   N+                       + + 
Sbjct: 67  IVVVVMLIALTALVGVLAASFNEFISMLPKFNKELT--------------RKLFKLQEML 112

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++
Sbjct: 113 PFLNLHMSPERILQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKM 172

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                +    +   + R +  V     L   + ++  G+++     L GV   +   V+ 
Sbjct: 173 R-FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGIIVWLGLELMGVQFALMWAVLA 230

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++  +P  GA IS     I +L+   I+    +     +   ++   L P ++G  + +
Sbjct: 231 FLLNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGM 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFI 330
             +  F  L+     +G +G+ +
Sbjct: 291 STMVVFLSLLIWGWLLGPVGMLL 313


>gi|209522034|ref|ZP_03270692.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
 gi|209497535|gb|EDZ97732.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
          Length = 596

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/327 (13%), Positives = 100/327 (30%), Gaps = 14/327 (4%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES------STFLAVIATVSVM 71
            +++ +LYF +    P+  ++++ F   P+                 +   A+ + +++ 
Sbjct: 33  VVVVCALYFGREVLIPITLSVLLSFLLAPLVQMLRRLHMGQLPSIFIAVLFALASLLAIG 92

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL----SDIPGGMWASELWTKHL 127
            L    L+ L        + +  K+    +  +     L    +     M  S     HL
Sbjct: 93  ALIGAQLVQLAGALPQYQEAIEQKIETVQEKTVGRADSLMTSAATALQRMAPSRPAPPHL 152

Query: 128 SHPQSLKILSETFLKTNGIDFI--PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +   +                +   + A R     +    +   +++   F       + 
Sbjct: 153 TGRAARNAPQVPQQVEVHEPALTPVQLAQRALTPAIAPIETTFIVLVVTIFILLQREDLR 212

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            +L SL                   +   F+    + +  G ++     + GVP  +  G
Sbjct: 213 DRLISLFGSRDLHRTTTAINDAAGRLSRYFVAQLGVNLSAGSIIAIGLAMIGVPGALLFG 272

Query: 246 VITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           VI A++  +P  G    +  AV +   I+     A    +   +      +   P + G 
Sbjct: 273 VIAALLRFVPYIGIWIAALFAVFLAAAIQPQWTMAVYTLILFIVVDVAAGQIAEPLVYGH 332

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              L  L      +      G +GL +
Sbjct: 333 RSGLSPLAVVVAAIFWSWLWGPIGLVL 359


>gi|331085679|ref|ZP_08334762.1| hypothetical protein HMPREF0987_01065 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406602|gb|EGG86107.1| hypothetical protein HMPREF0987_01065 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 463

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 49/395 (12%), Positives = 127/395 (32%), Gaps = 40/395 (10%)

Query: 2   RETMLNPQGIMRWMIMFIILVS-----LYFLK------------GFFAPVLSALIIGFTS 44
           R T    Q + R M  F+++ +       FL+                P++   ++ +  
Sbjct: 29  RTTSKLQQHLNRGMTAFLVVAASIVFYFAFLRFGHISGVLGKIFQILKPIIYGFVLAYLL 88

Query: 45  WPIY----SSFISKKEES-------STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
            P+     +  +   +           F   +   + +      ++ L    + E+   +
Sbjct: 89  NPLMKMVENFIVKLLKGKIKKEERLKKFARGVGIFTALLFAGALIVALCNMILPELYRSI 148

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH-PQSLKILSETFLKTNGIDFIPRF 152
             +V      +    W+  +    +          +         E +++++ +  I  +
Sbjct: 149 RNMVYTVPEQL--NEWMERLSEMEFDDSTLALITKNVLTETTAFFENWIRSDLLRQINIW 206

Query: 153 ASRFGMI-------FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            S             ++  + II  +  LF          + + ++ +         I+R
Sbjct: 207 ISGLTEGVISVVNELMNIVIGIIVSVYVLFSKETFAGQSRKVVYAVLKPEKANLVLHITR 266

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTA 264
              ++     +G  I +   G++      +  +P  + + VI  +  +IP  G  I    
Sbjct: 267 KSNEIFGGFIIGKIIDSAIIGVLCFIGLSILDMPYTLLVSVIVGVTNVIPFFGPYIGAIP 326

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            +I +L+  +        ++      +    + P ++G    L      F ++ G    G
Sbjct: 327 SAILILLT-DPIKGLYFLVFIIFLQQLDGNIIGPKILGDSTGLSAFWVVFSILLGGGLFG 385

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             G+ +G    A+I  +++  I    E K   + +
Sbjct: 386 FAGMIMGVPTFAVIYYLFQMFINQNLEKKHLPTDS 420


>gi|296105169|ref|YP_003615315.1| hypothetical protein ECL_04839 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295059628|gb|ADF64366.1| putative membrane protein [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 349

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/321 (14%), Positives = 116/321 (36%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + F+ +          +A   V
Sbjct: 14  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFLRRGISRP-----VAITIV 68

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  LF      + E  + +   N+        L ++   +             
Sbjct: 69  VIVMLIALTALFGVLAASLSEFSTMLPQYNKELTRKIVALQEMMPFL------------- 115

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L I  E  L+    + I  +A+           SI+ +++ + F   +   +  +L  
Sbjct: 116 -NLHISPERMLRRMDSEKIMTYATTLMTGLSGAMASILLLVMTVVFMLFEVRHVPYKL-R 173

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V +   L   + ++  G+++     L GV   +  GV+  +
Sbjct: 174 FALNNPQIHIAGLHRALKGVSKYLALKTLL-SVWTGVIVWLGLMLMGVQFALMWGVLAFL 232

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA +S     I   +    +    +     +   ++   L P ++G  + +  
Sbjct: 233 LNYVPNIGAVLSAVPPMIQAFLFNGFYECMLVGALFLVVHMVLGNILEPRMMGHRLGMST 292

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           L  F  L+     +G +G+ +
Sbjct: 293 LVVFLSLLIWGWLLGPVGMLL 313


>gi|157737983|ref|YP_001490667.1| hypothetical protein Abu_1751 [Arcobacter butzleri RM4018]
 gi|157699837|gb|ABV67997.1| conserved hypothetical transmembrane protein [Arcobacter butzleri
           RM4018]
          Length = 347

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 100/266 (37%), Gaps = 7/266 (2%)

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE---LWTKHLSHPQSLKILS 137
           +  Y +L +  ++   + A    I +  +L+++P      +   L + H +    L I  
Sbjct: 58  IVSYFLLLLIVIILGFMFAYVINISLKDFLANLPSYEVKLKNLVLNSIHFAQSYGLNIDK 117

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              ++T          +        +    + +II + F   +  S   +L  +  +   
Sbjct: 118 AKIMETLNFSSFFGLTTNIIGSISTFLSKFLLVIIGVAFILAESKSFQTKLKVIFRNNAK 177

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG- 256
               +   +    I+  F+  T  +   G ++        V   +  GVI  +   +P  
Sbjct: 178 KL--QHFNLFSFNIQKYFVVKTFTSFLTGFIVTIMLAFFNVDYPILWGVIAMLFNFVPVV 235

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           G+ I+     +  L+  +IF+A  + +   +    +   L P L+G  + L  L  FF L
Sbjct: 236 GSIIASIPAILLALMNLDIFSAIWVIILYMVINISISNILEPKLMGRELGLSPLIIFFSL 295

Query: 317 VGGVRTMGLLGLFIG-PVLMALIAVI 341
           +     +G++G+F+  P+ M L    
Sbjct: 296 IFWGYILGIVGMFLAVPITMTLKIAF 321


>gi|158319308|ref|YP_001511815.1| hypothetical protein Clos_0256 [Alkaliphilus oremlandii OhILAs]
 gi|158139507|gb|ABW17819.1| protein of unknown function UPF0118 [Alkaliphilus oremlandii
           OhILAs]
          Length = 400

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/301 (16%), Positives = 111/301 (36%), Gaps = 11/301 (3%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP--VPRWLSDIPGGMWASEL 122
           +   S++ + I+ ++      ++E+   V + + A        + +W  D+P     + +
Sbjct: 99  LFLFSLIAMVIIFVVPQIGGNIIEISRRVPEYLNATIDFADELIEKWAKDLPSTSNLNNV 158

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                ++  ++   ++  L     + I R      M      L+ +  II  F+   D  
Sbjct: 159 GEYIEANINTIFSNTKLVLDYIFNNLIMRV-----MNITSGILNFVMGIIISFYLLGDKE 213

Query: 183 SISQQLDSLGEHLFP----AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           S  +  + +   +F          + R    +     +G  I +   G++      +  +
Sbjct: 214 SFKKGTERILRAVFSKKTVDRVVDLGREADTIFGKFVVGKFIDSFIIGVLCFIGLTILKI 273

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              + + VI  I  MIP   P      ++ + +  +  NA  + ++  I        L P
Sbjct: 274 KYGLLISVIIGITNMIPYFGPFIGAVPAVLITLFDSPINAIWVMIFIFILQQFDGLYLGP 333

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            ++G  + +      F +V G    G+LG+F+G  ++A+I       I    E KE+   
Sbjct: 334 KILGDSVGISPFWIIFSIVLGGGLYGVLGMFLGVPVVAIITTFSNRLIDWQLERKEEKEH 393

Query: 359 N 359
            
Sbjct: 394 Q 394


>gi|259502286|ref|ZP_05745188.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
 gi|259169751|gb|EEW54246.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
          Length = 373

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 53/332 (15%), Positives = 114/332 (34%), Gaps = 11/332 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFIS------KKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
             P+L   II +    +   +        K   +  F  +   V       + L  +   
Sbjct: 40  VTPLLIGAIIAYIVNLLLRKYEQLYQQLFKGPRARKFQRLWGIVLSYLSIFLILAIVIRL 99

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + E+   V  ++  N H   + R+++         +++ +      S     +      
Sbjct: 100 VIPELISCVQLLI--NNHSRVITRFITAFEHNSNLQDIFRRFDIRHLSWAKAEKILSYGF 157

Query: 145 GIDF--IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           G  F  +   AS    +     ++  F I  L +        ++ +D+    +       
Sbjct: 158 GGTFKALMSTASSVVSVATTSVVAFFFSIYLLIYKEMLAHQCTRLIDAYLGKIKRPLM-Y 216

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           + R       +   G    A   G+       +  +P    +GV+TAI A+IP    I  
Sbjct: 217 VVRTFDNCYSNYIGGQCKDAAILGITCFIGMTILRMPYATMIGVVTAIGALIPIIGAILG 276

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
            ++ + L+   +   A    ++  +   + ++   P +VG  I LP +  F  ++ G   
Sbjct: 277 ASIGVVLIFAVSPLKAGIFLVFIIVLQQLDNRITYPLVVGKSIGLPSVWVFAAVIVGGSI 336

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            G+LG+ +   L A +  I    +   + N +
Sbjct: 337 SGILGMMLTVPLFAALYQIVATDVGKREANAQ 368


>gi|215488750|ref|YP_002331181.1| predicted inner membrane protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|293412895|ref|ZP_06655563.1| conserved hypothetical protein [Escherichia coli B354]
 gi|312968213|ref|ZP_07782423.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|331665083|ref|ZP_08365984.1| putative membrane protein [Escherichia coli TA143]
 gi|215266822|emb|CAS11263.1| predicted inner membrane protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|291468542|gb|EFF11035.1| conserved hypothetical protein [Escherichia coli B354]
 gi|312287038|gb|EFR14948.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|320194024|gb|EFW68657.1| Putative PerM family permease [Escherichia coli WV_060327]
 gi|323188935|gb|EFZ74219.1| hypothetical protein ECRN5871_2527 [Escherichia coli RN587/1]
 gi|331057593|gb|EGI29579.1| putative membrane protein [Escherichia coli TA143]
          Length = 349

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 115/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +       +A   V
Sbjct: 14  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITIV 68

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E +S +   N+               +       + +   
Sbjct: 69  VVVMLIALTALVGVLAASFNEFISMLPKFNKE--------------LTRKLFKLQEMLPF 114

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++  
Sbjct: 115 LNLHMSPERILQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKM-R 173

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+  +
Sbjct: 174 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGVIVWLGLELMGVQFALMWAVLAFL 232

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA IS     I +L+   I+    +     +   ++   L P ++G  + +  
Sbjct: 233 LNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGMST 292

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 293 MVVFLSLLIWGWLLGPVGMLL 313


>gi|220907294|ref|YP_002482605.1| hypothetical protein Cyan7425_1877 [Cyanothece sp. PCC 7425]
 gi|219863905|gb|ACL44244.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7425]
          Length = 355

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 96/260 (36%), Gaps = 6/260 (2%)

Query: 96  VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT--NGIDFIPRFA 153
           V         +P  ++     +   + W  +   P +L    +    T  + ++ +    
Sbjct: 89  VAELQDLTAALPVLIASSNERLAGVQRWLIYRDLPINLNQWLDQLTATLPDTLNRLSDQL 148

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
            +  +  LD    ++  ++  F+   DG  I   L       F    K + R + + ++S
Sbjct: 149 WQIVLETLDSVAEVLLTLVLTFYLLLDGEKIWGGLTQQA---FGGRLKPLGRSLQQNLQS 205

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
            FLG   +A   G V+     L G+P  + LG+   +  ++P G     T V++ + ++ 
Sbjct: 206 YFLGQFTLAALMGTVMILVLLLLGIPFALLLGLGIGLFTLLPFGDVFGMTLVTLAIAVQ- 264

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
           N      + +   I   I+D+ + P L+G  + L  +     L+ G +  GL G+ +   
Sbjct: 265 NPEQGLKVAIAAVIVDQIIDQLVVPRLLGSLVGLRPVWVLAALLVGAKIAGLTGIILAVP 324

Query: 334 LMALIAVIWKESIMAIKENK 353
           L           +       
Sbjct: 325 LAGFCRSALDGFVEGSTPPN 344


>gi|71898100|ref|ZP_00680286.1| Protein of unknown function UPF0118 [Xylella fastidiosa Ann-1]
 gi|71732074|gb|EAO34130.1| Protein of unknown function UPF0118 [Xylella fastidiosa Ann-1]
          Length = 385

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/338 (14%), Positives = 136/338 (40%), Gaps = 16/338 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           ++++  +L   + L     P + ++ +G+ + P+           S  +AV     ++ L
Sbjct: 19  YVLVGGVLWMAWLLTPVLIPFVLSVFLGWLADPLVKRVE--WVGVSRAMAVCFVFFLVVL 76

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQ 131
            +V +L +F   +        +VV        +  W+ +  IP     +    +    P+
Sbjct: 77  LLVLVLMIFVPLIE------RQVVTLINTFPQMHDWVVNTVIPWVEQKTGSQLRTWLDPE 130

Query: 132 SLKILSETFLKTNGIDF--IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            +     +  +  G     +  + SR G + + + +++  + I  F+F RD     +++ 
Sbjct: 131 QMIQWMHSNWEQAGGVARGLFGYVSRSGFVMVTWVINLALLPILSFYFLRDWDKWVERVA 190

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +     +     +++    +V+ +   G  ++ +  G +      L G+   + +G+I  
Sbjct: 191 AAIPRAYIGTVSRLATEANEVLGAFIRGQFLVMLALGAIYAVGLSLVGLRLGLLIGLIAG 250

Query: 250 IMAMIPGGAPISFTAVSIYLLIKG----NIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +++ IP    I+   +++  +I      ++     + +   +   +    L P +VG  I
Sbjct: 251 LISFIPYLGAITGVVLALIAVIVQVHGLDLQLLVLVGVVFGVGQLLESYVLTPRIVGDKI 310

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L  +   F ++ G +  G +G+ +   + A++ V+ +
Sbjct: 311 GLHPVAVIFSVMAGGQLFGFVGMLLALPVAAVVNVLLR 348


>gi|331269591|ref|YP_004396083.1| hypothetical protein CbC4_1407 [Clostridium botulinum BKT015925]
 gi|329126141|gb|AEB76086.1| hypothetical protein CbC4_1407 [Clostridium botulinum BKT015925]
          Length = 369

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/328 (11%), Positives = 102/328 (31%), Gaps = 3/328 (0%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P + A  I +   PI      K + + T   +   + ++ L  +  + +         
Sbjct: 43  LMPFIVAFAIAYILNPIMKFIEKKLKVNRTISVLFTYILIIILITIFSMTVIPKVFNSGM 102

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           ++V K+    Q       W++        +      +       I   + + +  +    
Sbjct: 103 DMVDKMPEFAQKMY---SWVNSHISSKLMNSGSGNFVRDNAGKWIEKFSAISSTWLAVAL 159

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     +++   +I  I  L+   +   +    +  L    +      ++R V ++
Sbjct: 160 NQIVSTTTSLINFVFGLIISIYMLYDKEKFKQNSKNLVYILLSEKWGNKLINVARNVDEM 219

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + +      I +   G++      L   P  + + +I  +  MIP   P         + 
Sbjct: 220 VGTYIGIKAIDSFIIGIICFVGLMLFKCPYVLIISIIVMVTNMIPYFGPFMGMIPPFLIN 279

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +  +   A  + ++  +        L P LV   + +       G+       G++G+ +
Sbjct: 280 VFYDPKKAFGILIFLVLLQQFDAWILEPKLVSDRVGVSPFLVILGITVFGSLFGIIGMLL 339

Query: 331 GPVLMALIAVIWKESIMAIKENKEKISS 358
              +MA++ +          +   K   
Sbjct: 340 ASPIMAVLNIYVGGWFRRKVQEFNKTKE 367


>gi|331659770|ref|ZP_08360708.1| putative membrane protein [Escherichia coli TA206]
 gi|222035180|emb|CAP77925.1| UPF0118 inner membrane protein yhhT [Escherichia coli LF82]
 gi|312948027|gb|ADR28854.1| predicted inner membrane protein [Escherichia coli O83:H1 str. NRG
           857C]
 gi|331052985|gb|EGI25018.1| putative membrane protein [Escherichia coli TA206]
          Length = 349

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 114/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +       +A   V
Sbjct: 14  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITIV 68

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E +S +   N+                       + +   
Sbjct: 69  VVVMLIALTALVGVLAASFNEFISMLPKFNKELT--------------RKLFKLQEMLPF 114

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++  
Sbjct: 115 LNLHMSPERILQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMR- 173

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+  +
Sbjct: 174 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGIIVWLGLELMGVQFALMWAVLAFL 232

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA IS     I +L+   I+    +     +   ++   L P ++G  + +  
Sbjct: 233 LNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGMST 292

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 293 MVVFLSLLIWGWLLGPVGMLL 313


>gi|297193201|ref|ZP_06910599.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197720471|gb|EDY64379.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 366

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 55/334 (16%), Positives = 117/334 (35%), Gaps = 25/334 (7%)

Query: 14  WMIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            ++  +  V ++ +  F     PVL AL+      P+Y   +  K +  +  A +  V+V
Sbjct: 23  LLVTGVAAVGIWLVVRFQTAVTPVLLALLGTALLGPLYRRLLRMKVQ-QSLAAGLTCVAV 81

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +    +  +    +    ++V+ +  A                    S  +    +  
Sbjct: 82  VAVVGGAVYIVVSALIETGDQIVASLRQA----------------ASDLSRHFGAAGTSL 125

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
             L   +   L   G        S   ++     ++++ +++   FF RD       L S
Sbjct: 126 DDLASNARELLGKFGGTAASGVISGLSVVSEMIAIAVLALLLIF-FFLRDSDRAVGALRS 184

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +         + I+R   + +     G T IA+ + L +     +  VP  V LG +  +
Sbjct: 185 VAPGDGGELVEAIARRAFRGVEGFMRGTTFIALIDALCITLGLLVLRVPGAVGLGALVFV 244

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI--ELFIVDKTLRPFLVGGPIKLP 308
            A IP        AV++ L+   +      L+  G +     +    L+P +    + + 
Sbjct: 245 GAYIPYLGAFISGAVAV-LVALADRGFVIALWALGVVLAVQVLEGHVLQPMIQSRTVHMH 303

Query: 309 FLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
                  +  G    G+LG+ +  PV  A+   +
Sbjct: 304 PAVVLLAITAGASLAGVLGMLLAVPVTAAVFGAV 337


>gi|317481222|ref|ZP_07940293.1| hypothetical protein HMPREF1007_03412 [Bacteroides sp. 4_1_36]
 gi|316902555|gb|EFV24438.1| hypothetical protein HMPREF1007_03412 [Bacteroides sp. 4_1_36]
          Length = 371

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 53/334 (15%), Positives = 113/334 (33%), Gaps = 15/334 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY-G 85
           L G   P   A +I +  +P+ + F  +    +  +++   +  + +      +L     
Sbjct: 31  LSGVLLPFFIAWLIAYLIYPLVTFFQYRLRLKNRVISIFCALFSILIVGGTAFYLLVPPM 90

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           M E   +   V+    +G                SE   +++      ++  E  +    
Sbjct: 91  MDEFVRVKDLVIDYFSNGTHDGN------VPKTLSEFLRENIDTQFVTQLFKEENMLNAI 144

Query: 146 IDFIPRFASRFGM--IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
            + +PR  S        L    +   +++ + F   D  SIS+    L    +  +   +
Sbjct: 145 KETVPRLWSLLSESVNLLFSFFTFFLILLYIIFILLDYESISEGWPHLVPQKYRPFVINV 204

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
              V   +   F G   +A+  G++    + +   P  + LG+    + ++P    I F 
Sbjct: 205 MNDVKDGMNRYFRGQAFVALCVGILFSIGFLIIDFPLAIGLGLFIGALNLVPYLQIIGFI 264

Query: 264 AVSIYLLI----KGNIFNATC--LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
              +  ++     G  F            I   I D  + P ++G    L        L 
Sbjct: 265 PTIVLAILKAADTGGNFWIIIASALAVFIIVQAIQDGFIVPRVMGKITGLNPAIILLSLS 324

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
                MG+LG+ I   L  L+   ++  I+  ++
Sbjct: 325 IWGSLMGMLGMIIALPLTTLMLSYYQRFIINREK 358


>gi|307293615|ref|ZP_07573459.1| protein of unknown function UPF0118 [Sphingobium chlorophenolicum
           L-1]
 gi|306879766|gb|EFN10983.1| protein of unknown function UPF0118 [Sphingobium chlorophenolicum
           L-1]
          Length = 360

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 45/350 (12%), Positives = 104/350 (29%), Gaps = 20/350 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +    W  M I +  L  L      ++ AL++                    +   I  +
Sbjct: 26  KRAGVWFAMGIAIALLVLLAQPILLIMGALVLATMMDGGTRLLGRLLPIGRGWRLCIILI 85

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           + +   +            + + +    V+       + +WL  +       +  +    
Sbjct: 86  AALTFLVYTFYLTGSSLAAQAQAMR---VIVETQINRIGQWLQQLGVTTTPEDFKS---- 138

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                       L    +  + R  +  G   +    S + M++   F   +     + +
Sbjct: 139 ------------LAQQAMRSLGRVTAAVGT-MVGAITSGVMMLVLAIFIAMEPKLYERGV 185

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +        +  I+  +   +R    G  I    EG+      W  GVP    LG++T
Sbjct: 186 AWMLPMDKRGRFYTIADKMGWTLRRLMFGRLIGMAVEGVGTWLLLWAGGVPMAGLLGILT 245

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            + A +P    I    + + +            F        +    + P +      L 
Sbjct: 246 GLFAFLPNIGSIISGVLIVLVGFSAGADAGLYAFGVYLAVQIVDGYLIVPMVAKRATDLA 305

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                   +      G++GLF+   ++A+I V  +E   A++    + ++
Sbjct: 306 PALVLAAQILFGALFGIMGLFLADPIVAMIKVWLEERSKALEVENGRSAA 355


>gi|260857580|ref|YP_003231471.1| putative inner membrane protein [Escherichia coli O26:H11 str.
           11368]
 gi|260870199|ref|YP_003236601.1| putative inner membrane protein [Escherichia coli O111:H- str.
           11128]
 gi|257756229|dbj|BAI27731.1| predicted inner membrane protein [Escherichia coli O26:H11 str.
           11368]
 gi|257766555|dbj|BAI38050.1| predicted inner membrane protein [Escherichia coli O111:H- str.
           11128]
 gi|323154313|gb|EFZ40516.1| hypothetical protein ECEPECA14_4004 [Escherichia coli EPECa14]
 gi|323174113|gb|EFZ59741.1| hypothetical protein ECLT68_1326 [Escherichia coli LT-68]
 gi|323178999|gb|EFZ64573.1| hypothetical protein ECOK1180_2074 [Escherichia coli 1180]
          Length = 349

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 115/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +       IA   V
Sbjct: 14  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----IAITIV 68

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E +S +   N+               +       + +   
Sbjct: 69  VVVMLIALTALVGVLAASFNEFISMLPKFNKE--------------LTRKLFKLQEMLPF 114

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++  
Sbjct: 115 LNLHMSPERMLQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKM-R 173

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+  +
Sbjct: 174 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGVIVWLGLELMGVQFALMWAVLAFL 232

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA IS     I +L+   ++    +     +   ++   L P ++G  + +  
Sbjct: 233 LNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMST 292

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 293 MVVFLSLLIWGWLLGPVGMLL 313


>gi|187778849|ref|ZP_02995322.1| hypothetical protein CLOSPO_02444 [Clostridium sporogenes ATCC
           15579]
 gi|187772474|gb|EDU36276.1| hypothetical protein CLOSPO_02444 [Clostridium sporogenes ATCC
           15579]
          Length = 325

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 52/331 (15%), Positives = 128/331 (38%), Gaps = 13/331 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I FIIL+    ++   +    + +I +   PI++ F+  K  +  F A++  V+++ +
Sbjct: 2   LLIFFIILIKNTIVRDILSLFFISFVIYYILKPIHT-FLKHKGVNEKFSALLLVVTLIMI 60

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             + ++ +    + E   + S V    +       ++  I   +               +
Sbjct: 61  IGIFIISIIPAIIKEGYNITSSVGYIQK-------YIDYIYNKINLLNNNKILGGILNKI 113

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            +  E++  + G + + +F   FG   LDY +    + I +++F   G  I Q+   +  
Sbjct: 114 NVKIESYTVSIGENILNKFVG-FGENILDYAV----IPIIVYYFLAAGNKIIQKFFMIFP 168

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  K +   + K++    +   I+ +   ++        G+   + L +I     +
Sbjct: 169 VKVRGIVKNVFEDIDKILARYIISQIILCLIITILTFLVLVGLGIKLPILLSLINGFFNI 228

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P+  +  +I +    +   A    +       I    L P + G  + +  L   
Sbjct: 229 IPYFGPVIGSLPAILIAFTKSPKTALWALILLYAIQQIEGDILSPKITGDSVDMHPLTVI 288

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L+ G +  G LG+ +   +  ++ +I+++
Sbjct: 289 LLLLIGGKIYGFLGMVLAIPIGVIMKIIYED 319


>gi|170679689|ref|YP_001745724.1| hypothetical protein EcSMS35_3758 [Escherichia coli SMS-3-5]
 gi|218702219|ref|YP_002409848.1| hypothetical protein ECIAI39_3955 [Escherichia coli IAI39]
 gi|170517407|gb|ACB15585.1| putative membrane protein [Escherichia coli SMS-3-5]
 gi|218372205|emb|CAR20067.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli IAI39]
          Length = 349

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 43/321 (13%), Positives = 114/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +       +A   V
Sbjct: 14  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITIV 68

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E +S +   N+                       + +   
Sbjct: 69  VVVMLIALTALVGVLAASFNEFISMLPKFNKELT--------------RKLFKLQEMLPF 114

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++  
Sbjct: 115 LNLHMSPERMLQRMDSEKMVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMR- 173

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+  +
Sbjct: 174 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGVIVWLGLALMGVQFALMWAVLAFL 232

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA IS     I +L+   ++    +     +   ++   L P ++G  + +  
Sbjct: 233 LNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMST 292

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 293 MVVFLSLLIWGWLLGPVGMLL 313


>gi|85716427|ref|ZP_01047399.1| hypothetical protein NB311A_02501 [Nitrobacter sp. Nb-311A]
 gi|85696784|gb|EAQ34670.1| hypothetical protein NB311A_02501 [Nitrobacter sp. Nb-311A]
          Length = 381

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/341 (12%), Positives = 95/341 (27%), Gaps = 10/341 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +     L   ++       + + ++ G     +          + T   VI  +    L
Sbjct: 30  IVAFGAALALAWYSAATLLMLFAGILFGVFLTAMADLLRRIFGGNQTLRLVIVCILFTGL 89

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL----SDIPGGMWASELWTKHLSH 129
               ++        ++  L S +     +            S +  G     +    L  
Sbjct: 90  LSGVVVLGGTTIAQQVTALSSTLRAQLGNAKDFLEKQGIDTSFLNVGTRTGPIDVDTLPT 149

Query: 130 PQSLKILS------ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
           P +    S      +     +G   I     +      +   +   +I            
Sbjct: 150 PTTSASPSRGPKLPDASTIASGTGAIVSQTIKILAHVFEGVGNFFIVIFLGLLLAAQPKI 209

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
               +             ++   + + +R   LG         L+      L G+P  + 
Sbjct: 210 YRDGILRFVPTRRLPKATRLIDDISETLRRWLLGQMATMATLFLLTWIGLTLIGIPGALV 269

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           LG +T ++  IP    I   A+ +   +   +      F+      F+    L P +   
Sbjct: 270 LGFVTGLLTFIPNVGAILAGALIVLASLGSGLTAIISAFMLYLAVQFLEGNVLTPLIQRH 329

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            I +P    F   +      G+ GL +   L+A+I V+   
Sbjct: 330 AISIPPATLFAAQIFLGVLFGVWGLALALPLIAVIKVVLNH 370


>gi|281180503|dbj|BAI56833.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 349

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/323 (13%), Positives = 115/323 (35%), Gaps = 22/323 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +++   + +IL  ++        +L AL       P+ + FI +  +       +A  
Sbjct: 12  RILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAIT 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ + ++ L  L         E +S +   N+                       + + 
Sbjct: 67  IVVVVMLIALTALVGVLAASFNEFISMLPKFNKELT--------------RKLFKLQEML 112

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++
Sbjct: 113 PFLNLHMSPERILQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKM 172

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                +    +   + R +  V     L   + ++  G+++     L GV   +   V+ 
Sbjct: 173 R-FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGVIIWLGLELMGVQFALMWAVLA 230

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++  +P  GA IS     I +L+   I+    +     +   ++   L P ++G  + +
Sbjct: 231 FLLNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGM 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFI 330
             +  F  L+     +G +G+ +
Sbjct: 291 STMVVFLSLLIWGWLLGPVGMLL 313


>gi|66044791|ref|YP_234632.1| hypothetical protein Psyr_1545 [Pseudomonas syringae pv. syringae
           B728a]
 gi|63255498|gb|AAY36594.1| Protein of unknown function UPF0118 [Pseudomonas syringae pv.
           syringae B728a]
          Length = 356

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/343 (14%), Positives = 110/343 (32%), Gaps = 16/343 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + + ++  +++F+    +  L G  APVL+ L++ F    + S+    +      + ++ 
Sbjct: 15  DEEAVVLAVLLFLAFTLVLTLGGMLAPVLAGLVLAFLMHGLVSALERLRMPEMAAVGLVF 74

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           T+           F+    +  +  +              P  L+     +        H
Sbjct: 75  TL-----------FIGVLLVFLLVLVPLLWHQLITLFNEAPGMLAKWQSVLLLLPERYPH 123

Query: 127 LSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           L   + + +  E      G        F+     + ++  + ++ + I +FFF +D   I
Sbjct: 124 LVSDEQVLLAIEVARGEVGKIGQLALTFSISSLPLLVNLMIYLVLVPILVFFFLKDRHMI 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +           A   +++  + + I +   G  I     G V   A+   G+     L
Sbjct: 184 GRWARGYLPR-ERALINRVADEMKRQIANYIRGKVIEIFICGGVTYIAFAALGLNYAALL 242

Query: 245 GVITAI--MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            ++  I  +    G   ++     I L   G       L +   I   +    L P L  
Sbjct: 243 AMLVGISVVVPYVGAVVVTVPVALIGLFQWGWGDQFIYLMIAHGIIQALDGNVLVPLLFS 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             + L  +     ++      G  G+F    L  L   +    
Sbjct: 303 EAVNLHPVAIICAVLLFGGLWGFWGIFFAIPLATLFKAVLDAW 345


>gi|157157615|ref|YP_001464939.1| hypothetical protein EcE24377A_3956 [Escherichia coli E24377A]
 gi|170018294|ref|YP_001723248.1| hypothetical protein EcolC_0242 [Escherichia coli ATCC 8739]
 gi|191169693|ref|ZP_03031381.1| putative membrane protein [Escherichia coli B7A]
 gi|209920933|ref|YP_002295017.1| hypothetical protein ECSE_3742 [Escherichia coli SE11]
 gi|218697157|ref|YP_002404824.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli 55989]
 gi|256020822|ref|ZP_05434687.1| hypothetical protein ShiD9_18035 [Shigella sp. D9]
 gi|307311859|ref|ZP_07591497.1| protein of unknown function UPF0118 [Escherichia coli W]
 gi|331685120|ref|ZP_08385706.1| putative membrane protein [Escherichia coli H299]
 gi|157079645|gb|ABV19353.1| putative membrane protein [Escherichia coli E24377A]
 gi|169753222|gb|ACA75921.1| protein of unknown function UPF0118 [Escherichia coli ATCC 8739]
 gi|190900266|gb|EDV60127.1| putative membrane protein [Escherichia coli B7A]
 gi|209914192|dbj|BAG79266.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|218353889|emb|CAV00291.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli 55989]
 gi|306908003|gb|EFN38503.1| protein of unknown function UPF0118 [Escherichia coli W]
 gi|315062753|gb|ADT77080.1| predicted inner membrane protein [Escherichia coli W]
 gi|320199651|gb|EFW74241.1| Putative PerM family permease [Escherichia coli EC4100B]
 gi|323182939|gb|EFZ68340.1| hypothetical protein ECOK1357_3827 [Escherichia coli 1357]
 gi|323376659|gb|ADX48927.1| protein of unknown function UPF0118 [Escherichia coli KO11]
 gi|323944479|gb|EGB40553.1| inner membrane protein YhhT [Escherichia coli H120]
 gi|324116521|gb|EGC10439.1| inner membrane protein YhhT [Escherichia coli E1167]
 gi|331077491|gb|EGI48703.1| putative membrane protein [Escherichia coli H299]
          Length = 349

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 115/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +       +A   V
Sbjct: 14  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITIV 68

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E +S +   N+               +       + +   
Sbjct: 69  VVVMLIALTALVGVLAASFNEFISMLPKFNKE--------------LTRKLFKLQEMLPF 114

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++  
Sbjct: 115 LNLHMSPERMLQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKM-R 173

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+  +
Sbjct: 174 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGVIVWLGLELMGVQFALMWAVLAFL 232

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA IS     I +L+   I+    +     +   ++   L P ++G  + +  
Sbjct: 233 LNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGMST 292

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 293 MVVFLSLLIWGWLLGPVGMLL 313


>gi|166367439|ref|YP_001659712.1| hypothetical protein MAE_46980 [Microcystis aeruginosa NIES-843]
 gi|166089812|dbj|BAG04520.1| hypothetical protein MAE_46980 [Microcystis aeruginosa NIES-843]
          Length = 392

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 54/323 (16%), Positives = 115/323 (35%), Gaps = 9/323 (2%)

Query: 31  FAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F  +L A ++ F   +P+  +++ ++       A++ ++  + +F+   + L      + 
Sbjct: 55  FVILLIAAVLSFLLGYPV--TWLERQGLKRGLAAIVVSLITILIFVAVGITLVPLVFTQA 112

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           ++ V+++      G      L      M      +      Q    L        G    
Sbjct: 113 QQFVNRLPEWLDSGQRQLMQLDTKIDTMNLPIPISFDGLIAQFNSRLGAELQILAGRS-- 170

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
              A    +  +   L ++  II  F+       I + +           +    R+   
Sbjct: 171 VNLALNLTVFTVVRVLDVLLTIILTFYLLLHSPDIWRSIIQWLPKPVQQPFSLTLRL--- 227

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
             ++ F+G  I A    L L +A+    VP  +  G++   MA+IP G  +    V+  L
Sbjct: 228 SFQNYFVGQVICATCMALGLVTAFLSIKVPFGLLFGLLIGTMALIPFGGTVGIVTVTALL 287

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            ++ +I  A  +     +   IV+  + P ++G    L        ++ G R  GLLG+ 
Sbjct: 288 ALR-DIGLALQVLAVAVVVQQIVENGIAPRILGSVTGLNPFWVLVSVLTGARVGGLLGVI 346

Query: 330 IGPVLMALIAVIWKESIMAIKEN 352
           +   +  +I    +       E 
Sbjct: 347 VAVPMAVMIKEALEVIRQVTPEE 369


>gi|149280338|ref|ZP_01886459.1| permease [Pedobacter sp. BAL39]
 gi|149228887|gb|EDM34285.1| permease [Pedobacter sp. BAL39]
          Length = 367

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 103/298 (34%), Gaps = 20/298 (6%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
             +K +   +  A+++ V ++ +    L FL         +       A      V  W+
Sbjct: 50  METKWKFKRSLAAIVSVVLMIAVISAILFFLANQLTDLWADWPLLKQQAEHSFHDVQGWI 109

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
           S                +           +LK +    +   AS  G   +    +++F+
Sbjct: 110 S----------------ATFGVNTQKQIDYLKDSTSTALATSASVLGATLMTLSSTLLFL 153

Query: 171 IIALFF---FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
              L F          +   L S+ +        +I + +  +I+    G+ +      +
Sbjct: 154 SFLLLFTFFILNYRRVLFTFLTSVFKEEHTEKVSEIVKRIQYIIKKYITGLFLQMFIVTV 213

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           ++    WL  V   V LG+IT I  +IP  G   +     +       +     + +   
Sbjct: 214 LMIFVLWLLNVKYAVLLGLITGIFNIIPYIGIFTALLISVLITFATAGVAKVLLVIIAFV 273

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
               +    L P +VG  +K+  L  F G+V G    G+ G+F+    +A++ +I+  
Sbjct: 274 AVHALDGNILMPLVVGSKVKINALFAFIGIVVGEMVWGISGMFLCIPYLAMLKIIFDR 331


>gi|70726947|ref|YP_253861.1| hypothetical protein SH1946 [Staphylococcus haemolyticus JCSC1435]
 gi|68447671|dbj|BAE05255.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 361

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/332 (12%), Positives = 107/332 (32%), Gaps = 16/332 (4%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F   ++S  +        + S + K             + ++ +  + + F+    +  +
Sbjct: 41  FLPFMISGFLFYICL--PFQSILEKWGFPRWASITTIFIGLIAIIAIVVAFIAPIIISNV 98

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             L+       +    +  +              T+    P  +     + +K+ G    
Sbjct: 99  NSLIKATPSLQKEAEHIVNF------------SLTQMDKLPSDVTDRINSAVKSIGDSMT 146

Query: 150 PRFASRFG--MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
              A+ F     F+     +I +   L +  +D       L    +     +   + + +
Sbjct: 147 GILANSFTYLTSFISTVFLLIMVPFFLIYMLKDHEKFIPALAKFFKGERKVFVVDLMKDL 206

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
              ++S   G   +++  G++L   Y + G+P    L +   +  +IP   P    A + 
Sbjct: 207 NFTLKSYIQGQVTVSVILGVILYIGYTIIGLPYTPLLVLFAGVANLIPFLGPWLSFAPAA 266

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            L I  +      + +   I   +    + P ++G  + +  L     ++      G   
Sbjct: 267 VLGIIDSPTTFIWVCVVTLIAQQLEGNVITPNVMGKSLSIHPLTIIVVILAAGDLGGFTL 326

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           + I   L A++  I        +   +K +S+
Sbjct: 327 ILIAVPLYAVLKTIASNVFKYRQRIIDKANSD 358


>gi|330900067|gb|EGH31486.1| hypothetical protein PSYJA_21922 [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 359

 Score = 66.8 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 110/343 (32%), Gaps = 16/343 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + + ++  +++F+    +  L G  APV++ L++ F    + S+    +      + ++ 
Sbjct: 15  DEEAVVLAVLLFLAFTLVLTLGGMLAPVIAGLVLAFLMHGLVSALERLRMPEMAAVGLVF 74

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           T+           F+    +  +  +              P  L+     +        H
Sbjct: 75  TL-----------FIGVLLVFLLVLVPLLWHQLITLFNEAPGMLAKWQSVLLLLPERYPH 123

Query: 127 LSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           L   + + +  E      G        F+     + ++  + ++ + I +FFF +D   I
Sbjct: 124 LVSDEQVLLAIEVARGEVGKIGQLALTFSISSLPLLVNLMIYLVLVPILVFFFLKDRHMI 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +           A   +++  + + I +   G  I     G V   A+   G+     L
Sbjct: 184 GRWARGYLPR-ERALINRVADEMKRQIANYIRGKVIEIFICGGVTYIAFAALGLNYAALL 242

Query: 245 GVITAI--MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            ++  I  +    G   ++     I L   G       L +   I   +    L P L  
Sbjct: 243 AMLVGISVVVPYVGAVVVTVPVALIGLFQWGWGDQFIYLMIAHGIIQALDGNVLVPLLFS 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             + L  +     ++      G  G+F    L  L   +    
Sbjct: 303 EAVNLHPVAIICAVLLFGGLWGFWGIFFAIPLATLFKAVLDAW 345


>gi|256752917|ref|ZP_05493750.1| protein of unknown function UPF0118 [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256748197|gb|EEU61268.1| protein of unknown function UPF0118 [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 235

 Score = 66.8 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 67/178 (37%)

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
            A +  +  L   + II + I  F+F +D     ++++ +    +   +  I + + K++
Sbjct: 49  SAFKSVITILKDAVDIIIIPIVTFYFLKDKKVFKEEIERILPQKYSTKFFNILKKIDKIL 108

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
                    I+    +       L  V     +GV+  I+ +IP   PI     ++ + +
Sbjct: 109 SKYLRAQIYISTFVAIFTMIGLSLIKVKYAFLIGVLAGILNIIPYVGPILSIIPTVLIGL 168

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             ++       +   +   + +  + P ++   + L  +   F L+ G      LG F
Sbjct: 169 LDSLTKGFWALIICLLVQQVENAFITPKIMSDSVGLHPVTVIFSLIAGGELFWHLGTF 226


>gi|325662424|ref|ZP_08151030.1| sporulation integral membrane protein YtvI [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325471258|gb|EGC74482.1| sporulation integral membrane protein YtvI [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 376

 Score = 66.4 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/316 (15%), Positives = 108/316 (34%), Gaps = 4/316 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            + +V+ + L G+F P +   +I   + P+      + +      + I  V V+ L +  
Sbjct: 25  VVFVVAGFQLMGYFMPFVIGWVIAMIANPVVRWLEKRLKIVRKLGSAIIIVMVLGLIVTG 84

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           L F F     E+K  +       Q      R +     G++        +   + +  + 
Sbjct: 85  LYFGFSKAFTEIKIFIDNFPEMYQQFEEDFRQIGREFQGIFHLLPAELQVGWDEMVNNMD 144

Query: 138 ETF--LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +    L T   +     A  F        +++I  +I+ + F  +   I      +    
Sbjct: 145 QGMADLITGISEPTVTAAGNFAKRLPSILIAVIVTVISAYIFIAERDEIIVWSKKIAPSA 204

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                  +       +   F     I I   L+L        V   +   ++ A++  +P
Sbjct: 205 VQKKMTMVVDNFKYAVGGYFKAQFKIMIVVALILSLGLAFLKVKYVLLCAILIALLDFLP 264

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G   +    +++  + G+   A  L +  A    +V + ++P LV   + L  L T  
Sbjct: 265 FFGTGTAMIPWAVFEFLTGDYKLAIGLIILYATTQ-LVRQLIQPKLVADSMGLTPLVTLV 323

Query: 315 GLVGGVRTMGLLGLFI 330
            L  G +   + G+ +
Sbjct: 324 LLYVGYKMGSVFGMIL 339


>gi|320655761|gb|EFX23684.1| hypothetical protein ECO7815_03080 [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
          Length = 349

 Score = 66.4 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/321 (13%), Positives = 115/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +       +A   V
Sbjct: 14  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITIV 68

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E +S +   N+               +       + +   
Sbjct: 69  VVVMLIALTALVGVLAASFNEFISMLPKFNKE--------------LTRKLFKLQEMLPF 114

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++  
Sbjct: 115 LNLHMSPERMLQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKM-R 173

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+  +
Sbjct: 174 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGVIVWLGLELMGVQFALMWAVLAFL 232

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA IS     I +L+   ++    +     +   ++   L P ++G  + +  
Sbjct: 233 LNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMST 292

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 293 MVVFLSLLIWGWLLGPVGMLL 313


>gi|229065088|ref|ZP_04200382.1| hypothetical protein bcere0026_51420 [Bacillus cereus AH603]
 gi|228716189|gb|EEL67906.1| hypothetical protein bcere0026_51420 [Bacillus cereus AH603]
          Length = 344

 Score = 66.4 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 48/282 (17%), Positives = 98/282 (34%), Gaps = 8/282 (2%)

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           ++    Y ML     ++         I + + +      +              ++  + 
Sbjct: 66  IIIALLYVMLVAGIAITLFKYLPVLTIQISQLIYQFNVFLRNPPDSELIKYAVNAVNHME 125

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            +     G+D + +  +  G   L   LS+I  +    FF  +   I        E    
Sbjct: 126 LSKYVGQGVDILYKSITNVGKFGLQVLLSVILSL----FFLLEKARIVAFTSKFKESRLA 181

Query: 198 AYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            ++ +I     K  RS         +IAI   ++   A W+ G P  + L ++  ++ +I
Sbjct: 182 IFYNEIEYFGKKFARSFGKVIEAQFLIAIVNCVLSVIALWILGFPQLLGLALMIFLLGLI 241

Query: 255 PG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P  G  IS   + +     G I     + +   +   +    L P  +     LP   TF
Sbjct: 242 PVAGVIISLFPLCMIAYNIGGIMYVVYIVVIVTVIHALESYVLNPKFMSQKTNLPIFYTF 301

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             L+     +G+ GL IG  +   +  +   +   ++++ EK
Sbjct: 302 MVLIFSEHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKDVEK 343


>gi|284164867|ref|YP_003403146.1| hypothetical protein Htur_1587 [Haloterrigena turkmenica DSM 5511]
 gi|284014522|gb|ADB60473.1| protein of unknown function UPF0118 [Haloterrigena turkmenica DSM
           5511]
          Length = 363

 Score = 66.4 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/337 (14%), Positives = 104/337 (30%), Gaps = 23/337 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + I L   + L  +   VL A+ + + + P Y   + ++ E     A +  ++V+    V
Sbjct: 19  LLIALAIGFALYAYVGTVLFAIFLYYATRPFY-RLLDRRLEHPNVTATVTILAVVVPMFV 77

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            + +     + E+   ++       +   +  +LS                   +S+  +
Sbjct: 78  VVGYAGLVALQELDRFLA-ASDLEAYRSALQPYLSIARERNLDRLRRLLTSDTGRSITSV 136

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               L       +    S    +          M+  LF+  RD  ++ +      +   
Sbjct: 137 LRRGLPG-----LLERLSTIAGLVFSVLARFFLMLTFLFYLLRDDETLRRWFARSVD--G 189

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--------VPSHVALGVIT 248
                     V   + + F+    I      +    Y            V + V L V+ 
Sbjct: 190 DEQIVSFLEAVDDDLETIFVSNLAIVGVAAAIAAVTYLALNMVASGGAVVGTPVLLAVLI 249

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGN-----IFNATCLFLWGAIELFIVDKTLRPFLVG 302
            +  +IP  G  I +    +YLL         I+     F+     +  +       L+ 
Sbjct: 250 GVGTLIPAVGMKIVYVPYGLYLLGLALATPTPIWQPIAFFVLSFTVVDTIPDFFARSLLS 309

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
               +       G   G    G  GLF+GP+++ L  
Sbjct: 310 ARSGVHMGLVLLGYFLGTLAFGWYGLFLGPIVVVLAV 346


>gi|119484291|ref|ZP_01618908.1| hypothetical protein L8106_01197 [Lyngbya sp. PCC 8106]
 gi|119457765|gb|EAW38888.1| hypothetical protein L8106_01197 [Lyngbya sp. PCC 8106]
          Length = 374

 Score = 66.4 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 79/222 (35%), Gaps = 5/222 (2%)

Query: 96  VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASR 155
           ++   Q    +P  +      +   + W    S P  + IL +  L           A+ 
Sbjct: 86  IMQGRQLITRLPDLIESGKQQLAEFQAWGLERSLPIDVGILQQKLLVNLQGKAEAIAATS 145

Query: 156 FG--MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
            G  +   ++ +  I +++  F+   DG  +   + S    L P      +  + + ++ 
Sbjct: 146 LGLVVGTFNWFIDFILILVIAFYMLLDGERLWDGITSF---LSPKVRYIFTDCLARNLQG 202

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
             +G  I+ +   + L  +++L  VP  +   V   I+ +IP             ++   
Sbjct: 203 FVVGQFILGLFMAVSLTISFFLLKVPFFLLFAVFIGILEVIPFVGATLGIGTVTIIVAFI 262

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
           + + A  + L   I   I D  + P ++G    L  +  F  
Sbjct: 263 DWWLALQVLLVAIIFQQIKDNLVTPRIMGNITGLSPVIIFSS 304


>gi|260599778|ref|YP_003212349.1| hypothetical protein CTU_39860 [Cronobacter turicensis z3032]
 gi|260218955|emb|CBA34310.1| UPF0118 inner membrane protein yhhT [Cronobacter turicensis z3032]
          Length = 354

 Score = 66.4 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 47/321 (14%), Positives = 115/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           + +   + IIL  ++       P+L AL +     P+ + F+ +          +A   V
Sbjct: 19  LQKLAALVIILAGIHAAADVIVPLLLALFLAIVLNPLVTWFMRRGFRRP-----VAITIV 73

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E ++ +   N+               +    L  + +   
Sbjct: 74  VFVMLIGLTLLLGVLAASFNEFIALMPKYNKE--------------LTRKLLHLQEMVPF 119

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
             L +  E  L+    D +  FA+           S + +++ + F   +   +  +L  
Sbjct: 120 MHLHLSPERMLQRMDSDKMVTFATTLMTQLSGAMASAVLLVMTVVFMLFEVRHVPYKL-R 178

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                   +   + R +  V     L   +I++  G+++     L  +   +  GV+  +
Sbjct: 179 FALSNPQLHIAGLHRALKGVSHYLALKT-LISLWTGVIIWLGLTLLDIQFALMWGVLGFL 237

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  IP  GA +S     I  L+   ++    + +   +   I+   + P ++G  + +  
Sbjct: 238 LNYIPNIGAVLSAIPPMIQALLFNGVYEVVMVGVLFLLVHMILGNIVEPRMMGHRLGMST 297

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 298 MVVFLSLLFWGWLLGPVGMLL 318


>gi|170748680|ref|YP_001754940.1| hypothetical protein Mrad2831_2262 [Methylobacterium radiotolerans
           JCM 2831]
 gi|170655202|gb|ACB24257.1| protein of unknown function UPF0118 [Methylobacterium radiotolerans
           JCM 2831]
          Length = 381

 Score = 66.4 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 66/203 (32%)

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
           A+   +   D   +++ +      F  D  +                  ++     + +R
Sbjct: 177 AAAVILGLFDALGNVLVIAFLGLAFAADPKAYRDGAVRFVPPAKRWRASQVLDGAGETLR 236

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
               G  II     L   +     G+   + LG+   ++A +P   P+    V +   + 
Sbjct: 237 HWLFGQLIIMAVIFLCTWAGLAFLGIGGALILGLQAGLLAFVPTVGPLVAGLVIVLAALA 296

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
                             +    L PF+    + +P    F G +      GL G+ +  
Sbjct: 297 SGTKAVIGAIGVYLAVQCLESYGLTPFIQKRALDIPPATIFAGQLILGVIFGLWGIALAL 356

Query: 333 VLMALIAVIWKESIMAIKENKEK 355
            LMA+I V+ ++  +    +++ 
Sbjct: 357 PLMAVIKVLLEQLYVEDTLHEQP 379


>gi|323966139|gb|EGB61576.1| gyhhT [Escherichia coli M863]
 gi|323974884|gb|EGB69995.1| gyhhT [Escherichia coli TW10509]
 gi|327251111|gb|EGE62804.1| hypothetical protein ECSTEC7V_4098 [Escherichia coli STEC_7v]
          Length = 349

 Score = 66.4 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/321 (13%), Positives = 115/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +       +A   V
Sbjct: 14  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITIV 68

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E +S +   N+               +       + +   
Sbjct: 69  VVVMLIALTALVGVLAASFNEFISMLPKFNKE--------------LTRKLFKLQEMLPF 114

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++  
Sbjct: 115 LNLHMSPERMLQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKM-R 173

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+  +
Sbjct: 174 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGIIVWLGLELMGVQFALMWAVLAFL 232

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA IS     I +L+   ++    +     +   ++   L P ++G  + +  
Sbjct: 233 LNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMST 292

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 293 MVVFLSLLIWGWLLGPVGMLL 313


>gi|289523976|ref|ZP_06440830.1| putative AI-2 transport protein TqsA [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502632|gb|EFD23796.1| putative AI-2 transport protein TqsA [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 393

 Score = 66.4 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 44/311 (14%), Positives = 100/311 (32%), Gaps = 27/311 (8%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P++ A ++ F   P       KK         +A   ++ LF V  L  F      + 
Sbjct: 83  VMPLVIAWLLSFIFKPALLKLEKKKIPR-----GLAVSLILTLFFVICLLAFTLLYRRIL 137

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
             V+         + +   +                    Q   + ++  L+ +    + 
Sbjct: 138 PFVNAFPNYYGRLMKIIEEI-------------------GQKTDLPTDLLLEFDLGRRLA 178

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     +    +   +++ L F      + +++L            ++I   +   
Sbjct: 179 PLLFALPGKVITLISNFFLIVVFLVFILLGTPASTERLRRAFSLTTAERVQQIINSISYQ 238

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
           I    L   II+   G+ +  A  + GV   V  GV+  ++  IP  G+ I+     +  
Sbjct: 239 IGRYLLTTVIISASTGVAVWIALSVIGVDFAVNWGVLAFVLNFIPYVGSLIASIPPILVA 298

Query: 270 LIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           L++   +I  A    +   +    +   L P +VG  + +  +     L+      G +G
Sbjct: 299 LVQFYPDIKPAITTAIVLLVIQMSIGNFLAPKVVGDALNINPIVVLLSLLFWGWLWGGVG 358

Query: 328 LFIGPVLMALI 338
             +   +  ++
Sbjct: 359 AVLAVPIAVVV 369


>gi|282900524|ref|ZP_06308468.1| protein of unknown function UPF0118 [Cylindrospermopsis raciborskii
           CS-505]
 gi|281194577|gb|EFA69530.1| protein of unknown function UPF0118 [Cylindrospermopsis raciborskii
           CS-505]
          Length = 320

 Score = 66.4 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 53/303 (17%), Positives = 101/303 (33%), Gaps = 14/303 (4%)

Query: 37  ALIIGFTS-WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSK 95
           A I+ F   +P+    + K   + T+  +I  V  + L ++    L    + +  +L+  
Sbjct: 16  AAILAFLLNYPVQ--LLEKARITRTYSVIIVLVITLTLLVILGFTLVPMLVEQTTQLLKN 73

Query: 96  VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASR 155
           +             L  +           K L    S+          N +  I   A  
Sbjct: 74  IPDWVTSSQENLSRLQVL--------ARQKRLHIDFSVVSSQINASVQNILQQIASGAVG 125

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
           F    L   L+I+ +++  F+    G  +   L +           K  ++      + F
Sbjct: 126 FAGTLLSGLLNIVLVVVLAFYMLIYGDRLWSGLINQLPSYIGLPLSKSLQLN---FHNFF 182

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNI 275
           L   ++A+   + L   +    VP  +   +I  I  ++P         +   L+     
Sbjct: 183 LSQLLLALFMVIALTPIFLFLRVPFALLFAIIIGISELVPVIGATLGIGLVTLLVSLQTW 242

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
           + A  + +   I   I D  L P L+G    L  L  F  ++ G    GLLG  +   + 
Sbjct: 243 WLAFPVAMVAIIIQQIRDNILAPKLLGNFTGLNPLWIFIAILMGFEIGGLLGTLVAVPIA 302

Query: 336 ALI 338
             I
Sbjct: 303 GTI 305


>gi|325204203|gb|ADY99656.1| putative membrane protein [Neisseria meningitidis M01-240355]
          Length = 344

 Score = 66.4 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 126/336 (37%), Gaps = 10/336 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
              ++  ++ L     P   A ++ +   P+      KK  +    ++   V  + L + 
Sbjct: 7   FAALVWLVFALGDTLTPFAVAAVLAYVLDPLVEWL-QKKGLNRASASMSVMVFSLILLLA 65

Query: 77  PLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            LL +    + +   L S++  L       +  WL +  GG      + +         +
Sbjct: 66  LLLIIVPMLVGQFNNLASRLPQLIGFMQNTLLPWLKNTIGG------YVEIDQASIIAWL 119

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            + T   +N +        R G   +    +++ + + L++F  D    S  +  L    
Sbjct: 120 QAHTGELSNALKAWFPVLMRQGGNIVSSIGNLLLLPLLLYYFLLDWQRWSCGIAKLVPRR 179

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +P
Sbjct: 180 FAGAYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLVLVGLDSGFAIGMVAGILVFVP 239

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGGPIKLPFLPTF 313
                +   ++    +         L +W    +  F+    + P +VG  I L      
Sbjct: 240 YLGAFTGLLLATVAALLQFGSWNGILAVWAVFAVGQFLESFFITPKIVGDRIGLSPFWVI 299

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           F L+   + MG +G+  G  L A+  V+ +E +   
Sbjct: 300 FSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVQKY 335


>gi|313668331|ref|YP_004048615.1| integral membrane protein [Neisseria lactamica ST-640]
 gi|313005793|emb|CBN87247.1| putative integral membrane protein [Neisseria lactamica 020-06]
          Length = 356

 Score = 66.4 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 53/323 (16%), Positives = 111/323 (34%), Gaps = 12/323 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P   A ++ +   P+      K            TV V       LL L    ++ + 
Sbjct: 33  LTPFAVAAVLAYVLDPLVEWLQKKGFNR---AVASMTVMVFA-----LLLLAALLLIIVP 84

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            LV +          +  ++ +    +    +         S+    +  +         
Sbjct: 85  MLVGQFNSMVSRLPQLAGFMQNTLLPLLKDTVGNYVEIDQASIIAWLQAHMGELSNTLKA 144

Query: 151 RF--ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
            F    R     +    +++ + + L++F  D    S  +  L    F   + +I+  + 
Sbjct: 145 WFPVLMRQSSNIVSSIGNLMLLPLLLYYFLLDWQRWSCGISKLVPRRFADTYTRITGNLN 204

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +P     +   ++  
Sbjct: 205 EVLGEFLRGQLLVMLIMGLVYGLGLMLVGLDSGFAIGMLAGILVFVPYLGAFTGLLLATV 264

Query: 269 LLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
             +         L +W    +  F+    + P +VG  I L      F L+   + MG +
Sbjct: 265 AALLQFASWNGILAVWAVFAVGQFLESFFITPKIVGDRIGLSPFWVIFSLMAFGQLMGFV 324

Query: 327 GLFIGPVLMALIAVIWKESIMAI 349
           G+  G  L A+  V+ +E +   
Sbjct: 325 GMLAGLPLAAVTLVLLREGVQKY 347


>gi|300215084|gb|ADJ79500.1| Putative uncharacterized protein [Lactobacillus salivarius CECT
           5713]
          Length = 349

 Score = 66.4 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 55/355 (15%), Positives = 126/355 (35%), Gaps = 23/355 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  L  + + R+ ++  ++  LY  +   + +L   I  F    +  +   K +  S  +
Sbjct: 5   QRFLGNERLRRFTVLLFLVGVLYLARSMMSLILLTFIFSFLVISLNDAIRKKIDIPSKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            +I  + ++    + +       + + + LV+ +V    H            G      +
Sbjct: 65  VIIVYLLMIGGIYLAITIYLPKLVTQTENLVNYIVKFYNHPP---------KGTNDVINM 115

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            T+++S    +K +        G+  I ++ +  G       ++ I  ++  FFF  D  
Sbjct: 116 VTQYISQSDIMKQMR------GGMSIIVKYLANIGT----MGMTFIMALLLSFFFTIDKD 165

Query: 183 SISQQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            + +   S  +  +  ++      ++I             IIA+    +  +      +P
Sbjct: 166 DLFKFSKSFLKGPYSWFFNDVYYFAKIFVNSFGVVLETQFIIALINTAITTTILACMKMP 225

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              +L ++   M+MIP  G  IS   + +     G +     + +   +   +    L P
Sbjct: 226 QLFSLALLIFFMSMIPVAGVIISAIPMMLIGYTVGGVKYIIYIIIMLCVVHALEAYVLNP 285

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L+    +LP   TF  L       G+ GL +G  +   +  I       I+  +
Sbjct: 286 KLMSSRTELPIFYTFVVLYVSEHLFGMWGLIVGIPVFTFLLDILGVKSDHIRRER 340


>gi|298291114|ref|YP_003693053.1| hypothetical protein Snov_1114 [Starkeya novella DSM 506]
 gi|296927625|gb|ADH88434.1| protein of unknown function UPF0118 [Starkeya novella DSM 506]
          Length = 374

 Score = 66.4 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/322 (12%), Positives = 109/322 (33%), Gaps = 16/322 (4%)

Query: 5   MLNPQGIMRWM-IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           M   + +  W+ ++  ++ + + L     P ++ L + +   P+ +    K   +    +
Sbjct: 1   MAWHKQVTFWLTVLAAVIAASWLLSSVLLPFVAGLALAYFLNPVTTRLE-KWGVNRLAAS 59

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++A    + + I+ +L +      ++   + ++         + R  + I      +   
Sbjct: 60  LVAIALTLLIGILLMLLVVPIFGSQLAAFIQRL------PDYIVRLQNMITSEEKTATWL 113

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRD 180
              +             L + G  ++          G   +     ++   +  F+   D
Sbjct: 114 RDLVGDNMPSIQQGLNELVSQGATYMLTLIQSLWTGGQALISLFSLLVITPVVAFYILND 173

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              + +++DS          + ++R + + I     G +++ +  G     +  + G+  
Sbjct: 174 WNHMVEKVDSWLPVKNRPVIRGLARQMDRAIAGFVRGQSLVCLILGSFYAISLSMTGLNF 233

Query: 241 HVALGVITAIMAMIP----GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
              +G I+ I+  IP        +    V+I             + ++     FI    L
Sbjct: 234 GFVIGFISGIITFIPYVGSLTGLVLAAGVAIVQFFPDYSMIGLVIGIF-VFGQFIEGYIL 292

Query: 297 RPFLVGGPIKLPFLPTFFGLVG 318
            P LVG  + L  +   F L+ 
Sbjct: 293 SPKLVGDSVGLHPVWLMFALLA 314


>gi|320639757|gb|EFX09351.1| hypothetical protein ECO5101_02065 [Escherichia coli O157:H7 str.
           G5101]
          Length = 349

 Score = 66.4 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/321 (13%), Positives = 115/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +       +A   V
Sbjct: 14  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITIV 68

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E +S +   N+               +       + +   
Sbjct: 69  VVVMLIALTALVGVLAASFNEFISMLPKFNKE--------------LTRKLFKLQEMLPF 114

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++  
Sbjct: 115 LNLHMSPERMLQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKM-R 173

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+  +
Sbjct: 174 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGVIVWLGLELMGVQFALMWAVLAFL 232

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA IS     I +L+   ++    +     +   ++   L P ++G  + +  
Sbjct: 233 LNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMST 292

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 293 MVVFLSLLIWGWLLGPVGMLL 313


>gi|239831649|ref|ZP_04679978.1| Hypothetical protein OINT_1000858 [Ochrobactrum intermedium LMG
           3301]
 gi|239823916|gb|EEQ95484.1| Hypothetical protein OINT_1000858 [Ochrobactrum intermedium LMG
           3301]
          Length = 340

 Score = 66.4 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 60/325 (18%), Positives = 110/325 (33%), Gaps = 23/325 (7%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +++  L++    FAPV+ AL I    WPI  +              I  + V+CL +   
Sbjct: 16  VLIAMLHYGSAVFAPVVFALFIIMLVWPIQRALSLIMPRYVALA--ITFLLVVCLLLGFG 73

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
             + +      + +V   V        +  WL     G+ AS L +++ S          
Sbjct: 74  WLIAWTVGQVGRRIVIDAVRYQLLYEQLRTWLDG--HGIAASVLLSENFS---------- 121

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                  + +  R     G    +     I  ++ +     +      ++  L +     
Sbjct: 122 -------VSWTLRTLQTIGSRLNNTFSFWIVALVYVLLGLAETEEFGARIRQLKDQAAAT 174

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
            + + SR     IR   +   +++I  G  +    WL G+P     G +  I+  IP   
Sbjct: 175 AFLRASRSAAAKIRFYMVLRALMSIATGSFVWLLTWLVGLPFAETWGFVAFILNFIPFLG 234

Query: 259 PISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           P+  T +          N   A  +F+   I   ++   + P L G  I L    T F +
Sbjct: 235 PLVATLLITAFAFTHFANWQMALMVFIGLNIVQSVIGSVIEPRLTGKTISLSPFATLFSV 294

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVI 341
                  G+ G FIG  +  +    
Sbjct: 295 FAWGSLWGVFGAFIGVPITIVALTF 319


>gi|119490891|ref|ZP_01623174.1| hypothetical protein L8106_18482 [Lyngbya sp. PCC 8106]
 gi|119453709|gb|EAW34868.1| hypothetical protein L8106_18482 [Lyngbya sp. PCC 8106]
          Length = 339

 Score = 66.4 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 51/343 (14%), Positives = 112/343 (32%), Gaps = 24/343 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+ +    + +M  +   +++ +L   +    P+  A  I     P+ S    +     +
Sbjct: 1   MQISGTTTKTLMAIIATILVVAALQATRSISMPLAFAFFIAVLVHPLQSWLERRLPRWLS 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            + V+  +       V  L L    +                   VP +L  +       
Sbjct: 61  LILVLLLLIGFMGVAVGALTLSAEIIE----------------PKVPEYLDRLQQMGETL 104

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W +  S P         F   +GI+ + + A       L      I ++  L     +
Sbjct: 105 RSWAEERSIP------IPQFNAQDGINQVTQQAIGGIKTLLSAASLFILIVSLLVLLLLE 158

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                +++                    + +R   L MT+     G++  S  ++ GV  
Sbjct: 159 VNQYQEKVKQAFPSRSSDRIINAVSDTSEKLRRYLLVMTLTCCLTGILTASWCFIWGVDL 218

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               G++  ++  +P  G+ I+    ++   I   +       L  A+   I+   + P 
Sbjct: 219 AFVWGLVAFVLNYVPTLGSIIAVIPPTLVAFIFQGVPRGIATLLGLAVIQTILGNFVDPR 278

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
           L G  ++L        +V      G+ G  +G P+ +++I + 
Sbjct: 279 LQGKTLQLSPFVALVSIVFWGWVWGIPGAILGVPMTISIILMC 321


>gi|38704170|ref|NP_312350.2| hypothetical protein ECs4323 [Escherichia coli O157:H7 str. Sakai]
 gi|89110538|ref|AP_004318.1| predicted inner membrane protein [Escherichia coli str. K-12
           substr. W3110]
 gi|90111597|ref|NP_417931.4| inner membrane protein, predicted membrane permease, UPF0118 family
           [Escherichia coli str. K-12 substr. MG1655]
 gi|157162951|ref|YP_001460269.1| hypothetical protein EcHS_A3673 [Escherichia coli HS]
 gi|168747032|ref|ZP_02772054.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4113]
 gi|168753242|ref|ZP_02778249.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4401]
 gi|168759512|ref|ZP_02784519.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4501]
 gi|168765837|ref|ZP_02790844.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4486]
 gi|168772617|ref|ZP_02797624.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4196]
 gi|168779573|ref|ZP_02804580.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4076]
 gi|168785295|ref|ZP_02810302.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC869]
 gi|168797260|ref|ZP_02822267.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC508]
 gi|170082988|ref|YP_001732308.1| inner membrane protein [Escherichia coli str. K-12 substr. DH10B]
 gi|188496205|ref|ZP_03003475.1| putative membrane protein [Escherichia coli 53638]
 gi|194431192|ref|ZP_03063485.1| putative membrane protein [Shigella dysenteriae 1012]
 gi|194435818|ref|ZP_03067921.1| putative membrane protein [Escherichia coli 101-1]
 gi|195934968|ref|ZP_03080350.1| inner membrane protein [Escherichia coli O157:H7 str. EC4024]
 gi|208807622|ref|ZP_03249959.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4206]
 gi|208811875|ref|ZP_03253204.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4045]
 gi|208820437|ref|ZP_03260757.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4042]
 gi|209398386|ref|YP_002272918.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4115]
 gi|217324479|ref|ZP_03440563.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. TW14588]
 gi|238902565|ref|YP_002928361.1| putative inner membrane protein [Escherichia coli BW2952]
 gi|253771697|ref|YP_003034528.1| hypothetical protein ECBD_0267 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254163398|ref|YP_003046506.1| putative inner membrane protein [Escherichia coli B str. REL606]
 gi|254795394|ref|YP_003080231.1| putative inner membrane protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|256025802|ref|ZP_05439667.1| predicted inner membrane protein [Escherichia sp. 4_1_40B]
 gi|261224757|ref|ZP_05939038.1| predicted inner membrane protein [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254348|ref|ZP_05946881.1| predicted inner membrane protein [Escherichia coli O157:H7 str.
           FRIK966]
 gi|307140157|ref|ZP_07499513.1| inner membrane protein YhhT [Escherichia coli H736]
 gi|312972261|ref|ZP_07786435.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|84028001|sp|P0AGM1|YHHT_ECO57 RecName: Full=UPF0118 inner membrane protein yhhT
 gi|84028002|sp|P0AGM0|YHHT_ECOLI RecName: Full=UPF0118 inner membrane protein yhhT
 gi|85676569|dbj|BAE77819.1| predicted inner membrane protein [Escherichia coli str. K12 substr.
           W3110]
 gi|87082271|gb|AAC76499.2| inner membrane protein, predicted membrane permease, UPF0118 family
           [Escherichia coli str. K-12 substr. MG1655]
 gi|157068631|gb|ABV07886.1| putative membrane protein [Escherichia coli HS]
 gi|169890823|gb|ACB04530.1| predicted inner membrane protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|187771629|gb|EDU35473.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4196]
 gi|188018316|gb|EDU56438.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4113]
 gi|188491404|gb|EDU66507.1| putative membrane protein [Escherichia coli 53638]
 gi|189002228|gb|EDU71214.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4076]
 gi|189359127|gb|EDU77546.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4401]
 gi|189364557|gb|EDU82976.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4486]
 gi|189369883|gb|EDU88299.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4501]
 gi|189374511|gb|EDU92927.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC869]
 gi|189380018|gb|EDU98434.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC508]
 gi|194420647|gb|EDX36723.1| putative membrane protein [Shigella dysenteriae 1012]
 gi|194425361|gb|EDX41345.1| putative membrane protein [Escherichia coli 101-1]
 gi|208727423|gb|EDZ77024.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4206]
 gi|208733152|gb|EDZ81839.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4045]
 gi|208740560|gb|EDZ88242.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4042]
 gi|209159786|gb|ACI37219.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4115]
 gi|217320700|gb|EEC29124.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. TW14588]
 gi|238862577|gb|ACR64575.1| predicted inner membrane protein [Escherichia coli BW2952]
 gi|242378995|emb|CAQ33793.1| predicted inner membrane protein [Escherichia coli BL21(DE3)]
 gi|253322741|gb|ACT27343.1| protein of unknown function UPF0118 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975299|gb|ACT40970.1| predicted inner membrane protein [Escherichia coli B str. REL606]
 gi|253979455|gb|ACT45125.1| predicted inner membrane protein [Escherichia coli BL21(DE3)]
 gi|254594794|gb|ACT74155.1| predicted inner membrane protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|260447510|gb|ACX37932.1| protein of unknown function UPF0118 [Escherichia coli DH1]
 gi|309703880|emb|CBJ03221.1| putative membrane protein [Escherichia coli ETEC H10407]
 gi|310334638|gb|EFQ00843.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|315138048|dbj|BAJ45207.1| conserved hypothetical protein [Escherichia coli DH1]
 gi|315614743|gb|EFU95383.1| conserved hypothetical protein [Escherichia coli 3431]
 gi|320181967|gb|EFW56873.1| Putative PerM family permease [Shigella boydii ATCC 9905]
 gi|320191510|gb|EFW66160.1| Putative PerM family permease [Escherichia coli O157:H7 str.
           EC1212]
 gi|320645257|gb|EFX14273.1| hypothetical protein ECO9389_01809 [Escherichia coli O157:H- str.
           493-89]
 gi|320650568|gb|EFX19034.1| hypothetical protein ECO2687_04699 [Escherichia coli O157:H- str. H
           2687]
 gi|320661544|gb|EFX28959.1| hypothetical protein ECO5905_02077 [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320666567|gb|EFX33550.1| hypothetical protein ECOSU61_16165 [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323934540|gb|EGB30940.1| yhhT protein [Escherichia coli E1520]
 gi|323939308|gb|EGB35519.1| gyhhT [Escherichia coli E482]
 gi|323959674|gb|EGB55325.1| gyhhT [Escherichia coli H489]
 gi|323970073|gb|EGB65348.1| gyhhT [Escherichia coli TA007]
 gi|326337558|gb|EGD61393.1| Putative PerM family permease [Escherichia coli O157:H7 str. 1044]
 gi|326344691|gb|EGD68440.1| Putative PerM family permease [Escherichia coli O157:H7 str. 1125]
 gi|332085331|gb|EGI90503.1| hypothetical protein SB521682_4065 [Shigella boydii 5216-82]
 gi|332085941|gb|EGI91105.1| hypothetical protein SD15574_4198 [Shigella dysenteriae 155-74]
          Length = 349

 Score = 66.4 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/321 (13%), Positives = 115/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +       +A   V
Sbjct: 14  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITIV 68

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E +S +   N+               +       + +   
Sbjct: 69  VVVMLIALTALVGVLAASFNEFISMLPKFNKE--------------LTRKLFKLQEMLPF 114

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++  
Sbjct: 115 LNLHMSPERMLQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKM-R 173

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+  +
Sbjct: 174 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGVIVWLGLELMGVQFALMWAVLAFL 232

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA IS     I +L+   ++    +     +   ++   L P ++G  + +  
Sbjct: 233 LNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMST 292

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 293 MVVFLSLLIWGWLLGPVGMLL 313


>gi|148258202|ref|YP_001242787.1| putative permease [Bradyrhizobium sp. BTAi1]
 gi|146410375|gb|ABQ38881.1| putative permease [Bradyrhizobium sp. BTAi1]
          Length = 372

 Score = 66.4 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 57/344 (16%), Positives = 119/344 (34%), Gaps = 20/344 (5%)

Query: 4   TMLNPQGIMRWMIMFIILVS----LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
            ++    I+   ++ +  +     LY  KGFF P++ A ++G    P  +     +    
Sbjct: 28  PVIKRAEIVAVALVILTAICVTGVLYVAKGFFLPIVMAFVVGTMLSPAANFLERHRVPRG 87

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
                      + + I     L +   L    ++       +    +    + +      
Sbjct: 88  IGA--------VLIVIAVAAGLAFIIGLISAPVLDWTNRLPELATQLK---AKLHVFDRP 136

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
             +W +  +        +   L+    D++          F ++ L     ++     +R
Sbjct: 137 FAMWHEMQAAIGGGSAQAPPSLELPKFDWVQPTIEFLSPTFTEFLL-FFATLVLFIASWR 195

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D       + + G+H       +I   +   + +  L +T+I  G G+  G A  L G+P
Sbjct: 196 DLRR--TLIMTFGDHDARLRTLRILNELELHLGNYLLTVTLINTGVGVATGLACALTGMP 253

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           +   LG + A +  IP   PI+   V I   L+    +       L  A   F+    + 
Sbjct: 254 NPAGLGALAATLNFIPIIGPIATFCVLIMVGLIAFPTLSGGMVAPLIFAAITFMEGHFVT 313

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           P ++G  + L  L  F  L       G +G F+   L+ +  ++
Sbjct: 314 PTIIGRRLALNALAVFIALAFWTWLWGPMGAFLASPLLIVALIV 357


>gi|332140771|ref|YP_004426509.1| hypothetical protein MADE_1006845 [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550793|gb|AEA97511.1| hypothetical protein MADE_1006845 [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 347

 Score = 66.4 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 47/315 (14%), Positives = 107/315 (33%), Gaps = 22/315 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +++  +        P   ++ I     PI     + K     +L++   + ++ +F  
Sbjct: 19  LVVVMAGVKAASAIMVPFFLSVFIAIACSPIIRW--TSKFGVPKWLSITFVILLIVVFGF 76

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L  L    M E +E + +                           W        ++ I 
Sbjct: 77  LLAGLVGQSMTEFRENLPEYRNKLNTEFA-----------------WVVAKLAEFNIHIN 119

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            E              A+ F         ++  +++ + F   +  SI ++L        
Sbjct: 120 RELIASHLDPSTAMSVATNFISGMGGVLSNLFLILLTVIFMLFEADSIPRRLHIAL--AD 177

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
           P    K      + + S     T++++G G+++G   ++ GV   +   V+  ++  IP 
Sbjct: 178 PDMKLKHIDKFIRSVNSYLAIKTVVSLGTGVIIGVWLYVMGVDHFMLWAVLAFMLNFIPN 237

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ I+     +   ++     A    L   +   I+   + P L+G  + L  L  F  
Sbjct: 238 IGSIIAALPAVLIAFVQLGPAAAGFAALGFLLVNTIMGNMVEPRLMGKGMGLSTLVVFLS 297

Query: 316 LVGGVRTMGLLGLFI 330
           L+     +G +G+ +
Sbjct: 298 LIFWGWLLGTVGMLL 312


>gi|327386326|gb|AEA57800.1| hypothetical protein LCBD_2305 [Lactobacillus casei BD-II]
          Length = 340

 Score = 66.4 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 51/347 (14%), Positives = 115/347 (33%), Gaps = 23/347 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +F + + L+F +   + +L   I  F    +  +                      + +V
Sbjct: 2   LFSVFLLLWFARSIMSDILLTFIFAFLVSRLVHAVQRHVHIRP------------FVIVV 49

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
           P+  L   G++         ++    G+             + +     +    Q +   
Sbjct: 50  PVYILVILGLVYAAVHYVPAIIHQTIGLFNS-------VQNFYNSEAFANNQVMQWVLQS 102

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           +++   T  +        ++        L++    I  FFF  +  S+        +  F
Sbjct: 103 TKSLNLTEQLKTGVTTVLQYAGNIGAMGLTLFVSFILSFFFTIELDSLPAFGQLFLDSPF 162

Query: 197 PAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
             Y+K +     K I +          IA+   ++         +P+  +L ++  ++++
Sbjct: 163 GWYFKDLQYFAMKFINTFGVVMEAQIFIAVVNTVITTITLLFLKMPNTPSLAIMVFLLSL 222

Query: 254 IPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP  GA IS   ++I     G   +   + +  A    +    L P  +    +LP   T
Sbjct: 223 IPVAGAIISLIPLTIIGYTVGGWQDVLTILIMIAAIHVLEAYVLNPKFMSSRTQLPVFFT 282

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           F  L+   R  G  GL +G  +      +     +A   +K+   ++
Sbjct: 283 FVVLLVAERLFGTWGLIVGIPIFTFFLDVLGVKKIAGTAHKQSTYAS 329


>gi|198433623|ref|XP_002122006.1| PREDICTED: similar to CG2698 CG2698-PA [Ciona intestinalis]
          Length = 773

 Score = 66.4 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 44/264 (16%), Positives = 90/264 (34%), Gaps = 9/264 (3%)

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA------SRFGMI 159
           +   + D+           +++S   SL     T L++N    +   +         G +
Sbjct: 509 LLSRIMDLLNMNEVISWLQENVSALMSLGETVLTILRSNISLILSTVSVVWSAVLNGGTL 568

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK-ISRIVPKVIRSTFLGM 218
            L+  LS +     LF          + +  +G  + P + +      +   +   F   
Sbjct: 569 ILNLLLSFVIFFTTLFHLLSVSTDQYKPIQMIGAAIKPFFSETPFETAMQDALSGVFGAS 628

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAVSI-YLLIKGNIF 276
             +    GL     + + G        V+ A+  ++P           ++   L++GN  
Sbjct: 629 LKMFGFYGLYTWVNHSMFGANLVYMPSVLAALFGVVPLLTTYWVCIPAALEIWLLQGNPL 688

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            A CL ++  +    VD  +   +           T   + GGV T GL G   GP+++ 
Sbjct: 689 RAICLTVFQFLPTLFVDAAIYKDISSSGGGGHPYITGLAVAGGVYTFGLEGAIAGPLILC 748

Query: 337 LIAVIWKESIMAIKENKEKISSNF 360
            + V+      A ++  E +S   
Sbjct: 749 FLLVVVNMYAAATQKTNENVSRRL 772


>gi|238789129|ref|ZP_04632918.1| AI-2 transport protein tqsA [Yersinia frederiksenii ATCC 33641]
 gi|238722893|gb|EEQ14544.1| AI-2 transport protein tqsA [Yersinia frederiksenii ATCC 33641]
          Length = 357

 Score = 66.4 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 48/315 (15%), Positives = 110/315 (34%), Gaps = 22/315 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +I+  +        P L A+ +     P+    + + +   T   V+    ++ L  +
Sbjct: 25  LVVIMAGVKAASPIVVPFLLAIFLAIVLNPL-VKLLQRIKIPRTLAIVLLVTIIVLLMAL 83

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
               L                  N+    +P++   +   M   + ++   +   S+  +
Sbjct: 84  LFSRLGSSL--------------NEFARSLPQYRGMMLEKMRDLQEFSMRFNIEFSVDDI 129

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +    +  ++FI R  S          L ++ ++  LF   R  + +    D+      
Sbjct: 130 MKHVDPSTAMNFITRLLSHLSGAMASTFLLLMTVVFMLFEVERLPYKMQLMFDN------ 183

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
           P     I +     +    +  TII+I  G+V+       GV      G++  ++  IP 
Sbjct: 184 PEQGNAILKRALNGVTHYLVIKTIISIATGIVIWLFLAAMGVRFAFLWGLLAFVLNYIPN 243

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ ++     I  L+     +A  +     +   I    + P ++G  + L  L  F  
Sbjct: 244 IGSVLAAVPPIIQALLFNGFADAFAVTCGYILINLIGGNIIDPRMMGRGLGLSTLVVFLS 303

Query: 316 LVGGVRTMGLLGLFI 330
           L+     +G +G+ +
Sbjct: 304 LIFWGWLLGPIGMLL 318


>gi|126462746|ref|YP_001043860.1| hypothetical protein Rsph17029_1984 [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104410|gb|ABN77088.1| protein of unknown function UPF0118 [Rhodobacter sphaeroides ATCC
           17029]
          Length = 340

 Score = 66.4 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 57/178 (32%)

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
             FAS           +++ ++    +   D    ++ L +L          ++  I   
Sbjct: 125 GGFASTAVSATFGALGNVVIILFIGLYTAVDPGLYARGLRALLAPPLRPRGDEVLAIADG 184

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            +R    G  I     G++     WL G+P    LG+I A++  IP   P+     ++ L
Sbjct: 185 TLRGWLGGQIISMTVVGVLTWLGLWLIGIPLAFILGLIAALLTFIPNIGPVLSAVPALLL 244

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            +         +              + P +    + LP        +      GL+G
Sbjct: 245 ALPEGAEQVGLVLAVFLTVQTFESYLVTPLIQKERVALPPALIISAQLLMGVLFGLMG 302


>gi|313900143|ref|ZP_07833643.1| sporulation integral membrane protein YtvI [Clostridium sp. HGF2]
 gi|312955195|gb|EFR36863.1| sporulation integral membrane protein YtvI [Clostridium sp. HGF2]
          Length = 358

 Score = 66.4 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 47/306 (15%), Positives = 97/306 (31%), Gaps = 13/306 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L   +I F   P+     +         + I  +         +  LF  G   +K
Sbjct: 34  IMPFLIGFLIAFMLRPLIKRLTALSGGHEKLWSSIVILVFYATIGAFVTLLFMKGFAFLK 93

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           + V  +    Q  +    +L+D  G      +W +               L+++    I 
Sbjct: 94  DFVEDIPRLYQQNLEP--FLNDTLGN--VESVWKEVDITGAQAIQSFLDGLQSSLYSIIS 149

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ---QLDSLGEHLFPAYWKKI---- 203
             +     +F  +  S+  ++IA FF     F  +    ++ +      P    +I    
Sbjct: 150 SLSKHLVSLFTGFASSLPNLLIAFFFAIISSFFFNADYPRIIAFFIRQLPEKGAQIVFTS 209

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISF 262
                  I    +    I +     L     + G+ + + +  + AI  ++P  G     
Sbjct: 210 RHYFTDTIARFAVAYGKIMLLTFFELTIGLHILGIENALVIAFLIAIFDVLPVLGTGGIM 269

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
               +   +   +     L +   + + ++   + P +VG  I L  L     +  G R 
Sbjct: 270 LPWILISFLNNQVKTGVGLLILY-LVITVIRNIIEPKIVGKQIGLHPLLMLMCMYLGARL 328

Query: 323 MGLLGL 328
            G LG+
Sbjct: 329 FGFLGI 334


>gi|326790477|ref|YP_004308298.1| hypothetical protein Clole_1374 [Clostridium lentocellum DSM 5427]
 gi|326541241|gb|ADZ83100.1| protein of unknown function UPF0118 [Clostridium lentocellum DSM
           5427]
          Length = 385

 Score = 66.4 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 47/335 (14%), Positives = 124/335 (37%), Gaps = 13/335 (3%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESST------FLAVIATVSVMCLFIVPLLFLFYYGM 86
           P +    + +     Y+ F++K  +++           ++ ++   +F   + F+F   +
Sbjct: 40  PFIWGFALAYILNIPYTYFLTKLFKNNKRDPRYKLKKSLSLIASYLIFFFIIGFIFSMLI 99

Query: 87  LEMKELVS-KVVLANQHGIPVPRWLSDIPGGMWAS-ELWTKHLSHPQSLKILSETFLKTN 144
            ++ E ++  +  + ++   +  +L+DI   +     +W +      SL  + +  L + 
Sbjct: 100 PQLGESINIFMANSTEYYQTLQNYLTDIVTKLKLEPSIWNEIQKAIMSLVEVLKGLLPS- 158

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               +    +      ++   ++   +  L         +++ LD+   +      K + 
Sbjct: 159 ----LIGVVTSTASGLVNLLGTLFISVYFLASKETLMSLVTRTLDAFATNKTKTKLKHVL 214

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            +  +  R   +G    A+  G++      L G P  + LG +  +  +IP   P     
Sbjct: 215 EVTDQTFRGFIIGQLTDALIIGIITFVCSSLFGFPYPILLGFLAGVTNVIPVIGPFIGAV 274

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             + +++      A    ++  I   I    + P +VG    L  L     ++ G    G
Sbjct: 275 PCVLIILMVEPTKAIWYVIFITILQQIDGNFICPKIVGDSTGLDGLWILLAVIVGGGFFG 334

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           ++G  +   L A+   +++E +      +   SS+
Sbjct: 335 VVGCLLAVPLCAVAFKLYEEFLSHRLTTENASSSD 369


>gi|126699652|ref|YP_001088549.1| hypothetical protein CD2035 [Clostridium difficile 630]
 gi|255307040|ref|ZP_05351211.1| hypothetical protein CdifA_10657 [Clostridium difficile ATCC 43255]
 gi|115251089|emb|CAJ68920.1| putative sporulation integral membrane protein [Clostridium
           difficile]
          Length = 363

 Score = 66.4 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 52/356 (14%), Positives = 120/356 (33%), Gaps = 11/356 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSS----FISKKEES 58
                 + ++ +  + +IL  L  L  +   VL   +  F    + +        K    
Sbjct: 8   SYQNKQRFLINFCYLVVILGLLMLLGKYAFSVLLPFVFAFLIASLLNKPVLYISEKLLIK 67

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWL---SDIP 114
              +A I+      +  + +  +  Y +  +KE+   +  +  +  IP+   +    ++ 
Sbjct: 68  RGIVATISVFLFFLIAGIIVSVIGTYLIYGIKEIFHFLPTMFEELVIPLTETVIKEVELF 127

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
            G +         ++   L      F+ +   + +         + L + +  I  I+A 
Sbjct: 128 SGSFNFSFIELIEANMPVLMNEMSVFIVSLSNNIVSGITDIVSSVPLLF-MKTIITIVAS 186

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
            F   D  +I + +             +        I        +I       L   + 
Sbjct: 187 IFIAIDYPTIKRFIVLQIPKNKSYLLAEAKAFTIDTIIKCGFSYLLIFAITFSELYVGFV 246

Query: 235 LAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
           +  +     + +  A++ ++P  G         I  L  G+   A  + L   +   I  
Sbjct: 247 IINISYAGIIALFIALLDILPVLGTGSILIPWCIISLFLGDYSMALGIALLYIVITIIR- 305

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
             + P LVG  ++L  +     ++ G+   G +GLF  P+L+A +  +  + I+ I
Sbjct: 306 NIIEPKLVGKHMELHPVLALASMLTGLHFFGFIGLFGIPLLIAFLKKLNDKEIIHI 361


>gi|120555864|ref|YP_960215.1| hypothetical protein Maqu_2954 [Marinobacter aquaeolei VT8]
 gi|120325713|gb|ABM20028.1| protein of unknown function UPF0118 [Marinobacter aquaeolei VT8]
          Length = 386

 Score = 66.4 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 55/144 (38%), Gaps = 2/144 (1%)

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGA 258
             +I   +   +R     M I A+  G++   A+ L GV      GV+  I + +P  G 
Sbjct: 227 AARIMNELHHQVRRFLFVMVISALFVGILTWLAFLLLGVEQAALWGVVAGIASGVPYLGP 286

Query: 259 PISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            +      +   ++ G +  A  + L   +   I    L P+L      L  +  F GL+
Sbjct: 287 FLVLVGSGVAAFLQFGELNTAVIVALTSLVITSIQGNLLMPWLTSYVSSLNAVAIFIGLL 346

Query: 318 GGVRTMGLLGLFIGPVLMALIAVI 341
                 G +GL +   ++ +   +
Sbjct: 347 FWGWLWGPVGLIVATPILMIAKSV 370


>gi|159026200|emb|CAO86358.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
 gi|159029535|emb|CAO87687.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 392

 Score = 66.0 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 54/323 (16%), Positives = 115/323 (35%), Gaps = 9/323 (2%)

Query: 31  FAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F  +L A ++ F   +P+  +++ ++       A++ ++  + +F+   + L      + 
Sbjct: 55  FVILLIAAVLSFLLGYPV--TWLERQGLKRGLAAIVVSLITILIFVAVGITLVPLVFTQA 112

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           ++ V+++      G      L      M      +      Q    L        G    
Sbjct: 113 QQFVNRLPEWLDSGQRQLMQLDTKIDTMNLPIPISFDGVIAQFNSRLGAELQILAGRS-- 170

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
              A    +  +   L ++  II  F+       I + +           +    R+   
Sbjct: 171 VNLALNLTVFTVVRVLDVLLTIILTFYLLLHSPDIWRSIIQWLPKPVQQPFSLTLRL--- 227

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
             ++ F+G  I A    L L +A+    VP  +  G++   MA+IP G  +    V+  L
Sbjct: 228 SFQNYFVGQVICATCMALGLVTAFLSIKVPFGLLFGLLIGTMALIPFGGTVGIVTVTALL 287

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            ++ +I  A  +     +   IV+  + P ++G    L        ++ G R  GLLG+ 
Sbjct: 288 ALR-DIGLALQVLAVAVVVQQIVENGIAPRILGSVTGLNPFWVLVSVLTGARVGGLLGVI 346

Query: 330 IGPVLMALIAVIWKESIMAIKEN 352
           +   +  +I    +       E 
Sbjct: 347 VAVPMAVMIKEALEVIRQVTPEE 369


>gi|325130277|gb|EGC53045.1| putative membrane protein [Neisseria meningitidis OX99.30304]
 gi|325136295|gb|EGC58903.1| putative membrane protein [Neisseria meningitidis M0579]
 gi|325142409|gb|EGC64815.1| putative membrane protein [Neisseria meningitidis 961-5945]
          Length = 344

 Score = 66.0 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 127/336 (37%), Gaps = 10/336 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
              ++  ++ L     P   A ++ +   P+      KK  +    ++   V  + L + 
Sbjct: 7   FAALVWLIFALGDTLTPFAVAAVLAYVLDPLVEWL-QKKGLNRASASMSVMVFSLILLLA 65

Query: 77  PLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            LL +    + +   L S++  L +     +  WL +  GG      + +         +
Sbjct: 66  LLLIIVPMLVGQFNNLASRLPQLISFMQNTLLPWLKNTIGG------YMEIDQASIIAWL 119

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            + T   +N +        R G   +    +++ + + L++F  D    S  +  L    
Sbjct: 120 QAHTGELSNALKAWFPVLMRQGGNIVSSIGNLLLLPLLLYYFLLDWQRWSCGIAKLVPRR 179

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +P
Sbjct: 180 FAGAYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLVLVGLDSGFAIGMVAGILVFVP 239

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGGPIKLPFLPTF 313
                +   ++    +         L +W    +  F+    + P +VG  I L      
Sbjct: 240 YLGAFTGLLLATVAALLQFGSWNGILSVWAVFAVGQFLESFFITPKIVGDRIGLSPFWVI 299

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           F L+   + MG +G+  G  L A+  V+ +E +   
Sbjct: 300 FSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVQKY 335


>gi|114706428|ref|ZP_01439330.1| hypothetical protein FP2506_01550 [Fulvimarina pelagi HTCC2506]
 gi|114538289|gb|EAU41411.1| hypothetical protein FP2506_01550 [Fulvimarina pelagi HTCC2506]
          Length = 400

 Score = 66.0 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 57/356 (16%), Positives = 114/356 (32%), Gaps = 33/356 (9%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           P+  +  +   ++   LY    F  PV+ A++      PI      + +      A    
Sbjct: 33  PRWAVIGIFFMMLFGGLYLTASFVLPVIIAVLFALVMSPIVRFLRRRLKIWEPVSAFFLV 92

Query: 68  VSVMCLFIV-------PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW----------- 109
           +  +            P+  +        + +  ++         +              
Sbjct: 93  IGSLTFLTFGFYMLSDPIANIISNAPEYARAVDKEIRTVQARFQRLQEASENVGEGGTDD 152

Query: 110 -LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII 168
            ++ +P   +A               ++    L  N  + +P   +      +     + 
Sbjct: 153 GVNRLPPSPFAQPEPEPENDDEPQEVVVKNPGLVDNAANELPTILASVLFALVFLFFLLA 212

Query: 169 FMIIALFFFYRDGFSISQQLDSLGEHLFPA-YWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
                       G     +L  L   L        I+  + + +   FL +T+I  G G+
Sbjct: 213 -----------SGDMFYAKLVRLMPTLEDKKRALHIAHDIERELSRYFLTITLINTGLGI 261

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWG 285
            +G+  W  G+PS V  G +  ++  IP  GA      V +  L + G++  A    L  
Sbjct: 262 AVGTGLWYVGMPSPVVFGALATLLNFIPYLGALFGMGLVGVIALAEFGSLAEAAIPVLIY 321

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                I  + L P +VG  +++     F  +       G+LG+F+   LM  I V 
Sbjct: 322 LAVTTIEGQFLTPMIVGRRLQMNAAAVFLSVAFWGWIWGVLGMFLAVPLMVAIKVF 377


>gi|210608910|ref|ZP_03288047.1| hypothetical protein CLONEX_00226 [Clostridium nexile DSM 1787]
 gi|210152827|gb|EEA83833.1| hypothetical protein CLONEX_00226 [Clostridium nexile DSM 1787]
          Length = 450

 Score = 66.0 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 59/391 (15%), Positives = 125/391 (31%), Gaps = 50/391 (12%)

Query: 9   QGIMRWMIMFIILVSLYFLKGF-------------FAPVLSALIIGFTSWPIYSSFISKK 55
           +G+  ++++   +V  +    F               P++  L+I +   PI        
Sbjct: 47  KGMTAFLVVAASIVFYFAFLRFNGISNIFEKIFQILKPIIYGLVIAYLLNPIVKLVERHL 106

Query: 56  ------------------EESSTFLAVIATVSVMCLF---IVPLLF-----LFYYGMLEM 89
                               S  F A+I +V V+      ++P L+     L      +M
Sbjct: 107 TPFLEKKLKKKETAHKIGRGSGVFAALIFSVFVIVALCNMLIPELYKSIRDLIVTLPEQM 166

Query: 90  KELVSKVVLANQHGIPVPRWLSDI-PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
                 +         +   L +I   G    E W K     Q+  ++S   +       
Sbjct: 167 NSWAQDMNAFLISNSTLDTMLKNIITEGTDTVENWLKTDLLQQANTLMSNLTVGVI---- 222

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
                       ++  +  I  +  LF          + + +L +         I++   
Sbjct: 223 ------NVVSEIMNVLIGFIVSVYVLFSKELFSGQCKKIVYALMKPDHANMTLHITKKSN 276

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           ++     +G  I +   G++   A  +  +P  + + VI  +  +IP   P      S  
Sbjct: 277 EIFGGFIIGKIIDSAIIGVLCFIALSIMKMPYTLIVSVIVGVTNVIPFFGPYIGAIPSTI 336

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L++           ++  I   I    + P ++G    L      F ++ G    G +G+
Sbjct: 337 LIMIAEPIQGLYFAIFILILQQIDGNIIGPKILGDSTGLSAFWVVFSILLGGGLFGFVGM 396

Query: 329 FIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            +G    A++  I +  I    E K+  +S+
Sbjct: 397 IMGVPTFAVLYYIAQMFINQKLERKKLPTSS 427


>gi|325663709|ref|ZP_08152113.1| hypothetical protein HMPREF0490_02854 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470202|gb|EGC73435.1| hypothetical protein HMPREF0490_02854 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 357

 Score = 66.0 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/319 (12%), Positives = 103/319 (32%), Gaps = 20/319 (6%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
           + + ++     P   A ++ +   P+  +  +  + +   +A    + ++ +    L FL
Sbjct: 30  IGIKYILPLVLPFFCAFLVAYLLRPLVRNIHAHTKLNQGAVAGGLLLIILGVAGTALWFL 89

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRW-------LSDIPGGMWASELWTKHLSHPQSLK 134
               + +    +                       +  +  G   S   T+  +  ++++
Sbjct: 90  GSALVQQFCYFIEHYGFYAGKMERFLDQCCRSMSRVFGMEAGELESLFVTRMATIAENIE 149

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                 L  N   ++       G+  + +    I +++  F   +         +     
Sbjct: 150 RQFVPKLMANSWGYVRTIIEVAGVGIIIFVS--IILLVNDFDKLK---------EKASHS 198

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           +   ++ KI + +  +         II      +    +     P  + LGV+   +  +
Sbjct: 199 IGYRHFVKILKRIFHMGGMFLKAQLIIMSVIAALCTVTFLFLKNPYALLLGVLIGFLDAL 258

Query: 255 PG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P  G  +    ++I    +G    A        I     +  L P L+G  + +P +   
Sbjct: 259 PVLGTAVVLYPLAIVQAFQGRFLFAAVYVGLSVICNLTRE-FLEPKLIGEHLGIPAIMVL 317

Query: 314 FGLVGGVRTMGLLGLFIGP 332
             +  G+R  G+ G+  GP
Sbjct: 318 VTVYMGIRLFGVSGVITGP 336


>gi|220919916|ref|YP_002495219.1| protein of unknown function UPF0118 [Methylobacterium nodulans ORS
           2060]
 gi|219952336|gb|ACL62727.1| protein of unknown function UPF0118 [Methylobacterium nodulans ORS
           2060]
          Length = 386

 Score = 66.0 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 42/333 (12%), Positives = 106/333 (31%), Gaps = 11/333 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  + +  ++ +LY  +    P + AL++     P+      +    ++  A +    ++
Sbjct: 46  ILVLSLLAVVYTLYLGRELILPTVLALVLKLLLGPVMRILHERLRLPNSLAAAL----LI 101

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +    +  + +   +     + +   +          L      +       ++L+   
Sbjct: 102 LVVFGAIAGVGFTISIPASVWIQRAPESLSLLKEKLAVLHHPLDLLQQGLHAIENLTG-- 159

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              I  E   +T         A           +     +I LFF    G  + +    +
Sbjct: 160 --TIGQEGQNQTITTRPASGLAGYLATGTATILVRFFTTMILLFFLLASGDRLLRGFIEV 217

Query: 192 GEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                      +I+  +   I    L +T++    G+  G A W  G+ + +  G    +
Sbjct: 218 LPSFSNKRQAVEIAHEIGTNISGYLLTITMMNTLVGVATGLAMWACGLGTPLLWGATAFL 277

Query: 251 MAMIPGGAPISFTAV--SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +  IP   P++   +     +L     + A        +      +T+ P L+     L 
Sbjct: 278 LNYIPILGPLAGLVIFFVAGVLSLDWPWYALMPVGLYLLIHIAEGETITPMLLAKRFTLN 337

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            +     L       G+ G  +   L+A++ ++
Sbjct: 338 PVLVIVSLFFWHMLWGVPGALLAVPLLAMLKIV 370


>gi|332162121|ref|YP_004298698.1| putative transport protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606171|emb|CBY27669.1| putative transport protein [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325666351|gb|ADZ42995.1| putative transport protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330864024|emb|CBX74103.1| aI-2 transport protein tqsA [Yersinia enterocolitica W22703]
          Length = 353

 Score = 66.0 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 51/315 (16%), Positives = 111/315 (35%), Gaps = 22/315 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +I+  +        P L A+ +     P+  S    K         +A V ++ + ++
Sbjct: 20  LVVIMAGIKAASPIVVPFLLAIFLAIVLNPLVKSLEKIKIPR-----TLAIVLLVTIIVL 74

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +  LF      + E    +          P++   +   M   + +    +   S+  +
Sbjct: 75  LMALLFSRLGSSLNEFARSL----------PQYRGMMLEKMRDLQEFAMRFNIEFSVDDI 124

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +    +  ++FI R  S          L ++ ++  LF   R  + +    D+      
Sbjct: 125 MKHVDPSMAMNFITRLLSHLSGAMASTFLLLMTVVFMLFEVERLPYKMQLMFDN------ 178

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
           P     I R     +    +  TII+I  G+V+       GV      G++  ++  IP 
Sbjct: 179 PEQGNAILRRALNGVTHYLVIKTIISIATGIVIWLFLAAMGVRFAFLWGLLAFVLNYIPN 238

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ ++     I  L+     +A  +     +   I    + P ++G  + L  L  F  
Sbjct: 239 IGSVLAAIPPIIQALLFNGFADAFAVTGGYILINLIGGNIIDPRMMGRGLGLSTLVVFLS 298

Query: 316 LVGGVRTMGLLGLFI 330
           L+     +G +G+ +
Sbjct: 299 LIFWGWLLGPIGMLL 313


>gi|161506667|ref|YP_001576617.1| putative permease [Lactobacillus helveticus DPC 4571]
 gi|160347656|gb|ABX26330.1| putative permease [Lactobacillus helveticus DPC 4571]
          Length = 344

 Score = 66.0 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 57/339 (16%), Positives = 114/339 (33%), Gaps = 17/339 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            N   + R+++  II+  LY ++     +L   I  +    +         +  T   V+
Sbjct: 9   KNNIPLRRFVVFLIIVAFLYEMRAMMNTILLTFIFTYVIVHLIHLVQRYVPKMPTGAIVV 68

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T  ++      L  L+++  + M  LV ++    +  +             +A+   +K
Sbjct: 69  VTYLII------LALLYFFITVYMPMLVGQISKMVKSVMAFYESDESSRLLSYATHYISK 122

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +    Q+           + + F    A+  G + +   +S+I          +     S
Sbjct: 123 NEIITQA----------KHAMTFAFHTATSIGTLTITTFMSLILSFFYTIELKKMREFTS 172

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             + S          +   +               IAI    +      +  +P  VALG
Sbjct: 173 LFVKSGYLKWLFEDIRYFGKKFTNTFGVVLEAQFFIAICNTALTMIGLAIMKMPQIVALG 232

Query: 246 VITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           ++  I++++P  G  IS   +SI     G I     +F+   I   I    L P  +   
Sbjct: 233 LMVFILSLVPVAGVIISLIPLSIVGYSVGGIRYVIYIFVMIMIIHAIEAYVLNPKFMASK 292

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            +LP   TF  L+      G  GL +G  +   +  +  
Sbjct: 293 TELPIFYTFLVLLVAEHFWGTWGLIVGVPIFTFLLDVLN 331


>gi|77463912|ref|YP_353416.1| hypothetical protein RSP_0340 [Rhodobacter sphaeroides 2.4.1]
 gi|77388330|gb|ABA79515.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1]
          Length = 340

 Score = 66.0 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 56/178 (31%)

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
             FAS           +++ ++    +   D     + L +L          ++  I   
Sbjct: 125 GGFASTAVSATFGALGNVVIILFIGLYTAVDPGLYRRGLRALLAPPLRPRGDEVLAIADG 184

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            +R    G  I     G++     WL G+P    LG+I A++  IP   P+     ++ L
Sbjct: 185 TLRGWLGGQIISMTVVGVLTWLGLWLIGIPLAFILGLIAALLTFIPNIGPVLSAVPALLL 244

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            +         +              + P +    + LP        +      GL+G
Sbjct: 245 ALPEGAEQVGLVLAVFLTVQTFESYLVTPLIQKERVALPPALIISAQLLMGVLFGLMG 302


>gi|89895286|ref|YP_518773.1| hypothetical protein DSY2540 [Desulfitobacterium hafniense Y51]
 gi|89334734|dbj|BAE84329.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 370

 Score = 66.0 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 96/287 (33%), Gaps = 6/287 (2%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P + A  I     P+   F+   + S    AV+A V  +      +  +      E+ 
Sbjct: 56  LLPFIIAFFIALLLEPLVLRFMQGLKTSRPIAAVLALVLAILGIGSIVFLIVVRLYTELS 115

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           +L +               L  +   +  +      +++     I S       G   + 
Sbjct: 116 DLGNSFPSYGYLVGFFNNILGTVDNFIQLNPQIQISINNATQGLIDSLQGWALTGSKVLL 175

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
            F S          + ++  ++A FF       +     +L    +    + +SR +   
Sbjct: 176 NFISA----LPGVFIVLVVSVVATFFMSASYPGVKNFFSNLVPRKWKPGARSVSRALGAA 231

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
           +        I+    G++L       G P    +G I+A++ ++P  G  + F    + L
Sbjct: 232 VVGFVRAEAILISVTGIILTVGLLWMGNPYAFTIGFISALLDLLPIVGTGMIFVPWIVGL 291

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
            I G++     L +   I   ++ + L P ++   I +  L T   +
Sbjct: 292 FILGSVSEGIKLLIIYLIA-TVIRQILEPKVMSQNIGIHPLATIISM 337


>gi|294783199|ref|ZP_06748523.1| permease [Fusobacterium sp. 1_1_41FAA]
 gi|294480077|gb|EFG27854.1| permease [Fusobacterium sp. 1_1_41FAA]
          Length = 364

 Score = 66.0 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 51/331 (15%), Positives = 129/331 (38%), Gaps = 8/331 (2%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
           G+F  ++ A+ I     PI      K + +      ++ V V+ + I+  L +    +  
Sbjct: 38  GYFMTLIMAIFIAILLEPIEKYLKKKSKINDVLAISLSIVFVVLIVIIMSLIVIPEIISS 97

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           +K L       ++  + + + +++         + T+ L+   +  I + T   +N  +F
Sbjct: 98  LKVLNDMYPAISEKVLTIGKDVTNYLAEKNIYTVDTQELNDSFTNFISNNT---SNIKEF 154

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP----AYWKKIS 204
           +  F        L +  ++I      F    D  ++ + L++L + +F      Y     
Sbjct: 155 VFAFVGGLVNWTLGFT-NLIIAFTLAFLILLDKKNLMKTLENLIKIIFGVKNTPYVMNKL 213

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
           ++   +  S   G  I++   GL +     + G P      ++  +  MIP    I    
Sbjct: 214 KLSKDIFISYVSGKIIVSFIVGLCVYIILLITGTPYAALSAILLGVGNMIPYVGSIFGGI 273

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           V+ +L++         L +   I   +    + P ++G  + L        ++      G
Sbjct: 274 VAFFLILLVAPIKTLILLIAIIISQLVDGFIVGPKIIGNKVGLSTFWVMVSMIIFGNLFG 333

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           ++G+F+G  ++++I + + + +   ++  ++
Sbjct: 334 IVGMFLGTPILSIIKLFYVDLLKRAEQGGKE 364


>gi|163749672|ref|ZP_02156918.1| hypothetical protein KT99_14855 [Shewanella benthica KT99]
 gi|161330485|gb|EDQ01443.1| hypothetical protein KT99_14855 [Shewanella benthica KT99]
          Length = 365

 Score = 66.0 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 43/323 (13%), Positives = 100/323 (30%), Gaps = 22/323 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G      + +IL  +        P + +  I     P+  +    K      LAV+  +
Sbjct: 18  KGFAIMAFIVVILAGVKAASPIVVPFVLSAFIAVICNPVIGAMTRFKVPRP--LAVLLLM 75

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +  + L  +    + E    +                             W     
Sbjct: 76  VFIVMMGLWLAQIVGSSINEFSNQLPHYRDQLVEQFG-----------------WIVQKL 118

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              ++ I  E  L            +           ++  +I+ + F   +  ++ ++L
Sbjct: 119 QTLNIIITKEQILAYFDPGIALSMTTNMLTGVGGVMANLFLIILTVVFMLFESQTLPRKL 178

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
               +   P    +        +    +  T++++  G+++G    + GV   +  GVI 
Sbjct: 179 HFALDD--PEMRMQQIDKFLHSVNQYMVIKTLVSLATGVIIGFGLAIIGVDYALLWGVIA 236

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP  G+ I+     +   I+     A    L       ++   + P  +G  + L
Sbjct: 237 FLFNYIPNIGSIIAAIPSVLLAFIQLGPTAAGVTALLYFCTSMVMGNLIEPRYMGKGLGL 296

Query: 308 PFLPTFFGLVGGVRTMGLLGLFI 330
             L  F  L+     +G +G+ +
Sbjct: 297 STLVVFLSLIFWGWLLGSVGMLL 319


>gi|55981999|gb|AAV69392.1| putative membrane protein [Edwardsiella tarda]
          Length = 140

 Score = 66.0 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 44/118 (37%), Gaps = 1/118 (0%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             I  +I+  L+ ++ F      A ++   +WP+     +          V+ T+ ++ L
Sbjct: 21  LFIALLIISCLWVVQPFILGFTWASMVVIATWPVLIWLQNHLWGKRWIAVVLMTLLLLLL 80

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHP 130
           F++P+  +    +     ++     A    +P   WL  +P  G      W   ++  
Sbjct: 81  FVLPIGMVITSLIGNAGPILDWAANARSWQMPQMEWLQTLPLIGAKLYASWQGLMNEG 138


>gi|197106263|ref|YP_002131640.1| hypothetical protein PHZ_c2802 [Phenylobacterium zucineum HLK1]
 gi|196479683|gb|ACG79211.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 355

 Score = 66.0 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 47/339 (13%), Positives = 104/339 (30%), Gaps = 19/339 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++       +   ++ L         A++       +    +        +    A V 
Sbjct: 12  RLLTVAAFVALGALVWKLADVILLAFGAVLTAVLLHALADPLVRYARLPRPWALTAAVVG 71

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +       L        L++  L   +          P     + G +  S L    L  
Sbjct: 72  LTAATWGTLYLFGREAALQLAALSELL----------PNAWRALQGELSRSVLGAYILDD 121

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            +SL+         +    I +   R          + + ++ A  +   +  +    L 
Sbjct: 122 LRSLQ---------HADGLIVQLGPRLIRGSASAGAAAVIVLFAGLYLAYNPSTYLGGLL 172

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L         +++ +   K +    +G  I  +  G+  G   WLAGVPS +ALGV+  
Sbjct: 173 KLVPARGRQRAEEVFKACGKALNRWLVGQLISMMLVGVTTGVGLWLAGVPSPLALGVVAG 232

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +   +P   P+      + +             +     +      + P ++   ++LP 
Sbjct: 233 LGQFVPVVGPMVSMIPGLIIAAGAGWETLAWTAVVYVGAMQAEANVITPLVLRQMVELPM 292

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             T F ++     +G LG+     L  +  V+ +   + 
Sbjct: 293 AVTLFAVLAMGVLLGPLGVLFATPLAVVAYVVVRMIYVE 331


>gi|171057363|ref|YP_001789712.1| hypothetical protein Lcho_0672 [Leptothrix cholodnii SP-6]
 gi|170774808|gb|ACB32947.1| protein of unknown function UPF0118 [Leptothrix cholodnii SP-6]
          Length = 353

 Score = 66.0 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 53/330 (16%), Positives = 111/330 (33%), Gaps = 14/330 (4%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
               P ++A ++ +   P     +  +      + ++   ++M         +    +L 
Sbjct: 29  PVLTPFVTAAVLAYALEPAVERLVRLRVPRLLAVVLVVLAAIM---------VALSVLLL 79

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           +  ++S+ +   +  IPV     +     W      +      S+K     +L  N  D+
Sbjct: 80  IVPILSQELPLLREQIPVLAARLNDTVVPWLRGYGIRVSLDIGSIKTFVVKYLSANVDDW 139

Query: 149 IPRFASRF---GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +    S     G   L    + + + + LF+   D   + ++L SL      A       
Sbjct: 140 LATVVSSARIGGSFVLALIGNAVLVPVVLFYLLADWSHLIERLRSLVPQRHAAAIHGFMS 199

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              +V+     G  ++ +   +    A  LAG    + +GV T +   +P         +
Sbjct: 200 ECDEVLGQYLRGQLLVMLVLAIYYTVALSLAGFDLALPVGVFTGLGIFVPYLGFGLGALL 259

Query: 266 SIYLLIK--GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
           +         +++    + L   +   I    L P LVG  I L  +   F L+      
Sbjct: 260 ATLAGALQFASVYGLLAVLLIYGVGQLIESFYLTPRLVGERIGLHPIAVIFALLAFGHLF 319

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G +G+ I     AL  V  +    A  ++ 
Sbjct: 320 GFVGVLIALPAGALALVALRRLRSAYLDSP 349


>gi|260437554|ref|ZP_05791370.1| putative permease [Butyrivibrio crossotus DSM 2876]
 gi|292810186|gb|EFF69391.1| putative permease [Butyrivibrio crossotus DSM 2876]
          Length = 451

 Score = 66.0 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 55/399 (13%), Positives = 131/399 (32%), Gaps = 51/399 (12%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYF----------LKGFFA-------PVLSALIIGFTS 44
           +   L  + +   ++ FI++ +             L GFF          +   ++ +  
Sbjct: 17  KRFKLPNKYLTIGLVAFIVVAACILFYYLFFEDKSLFGFFKISIQSVRAFIIGAVLAYLL 76

Query: 45  WPI-------YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
            PI            +K +       +   +++ C  I+ +  ++      + E++  V+
Sbjct: 77  KPICAIFENWLGKAFAKLKNRKRAKNLQINIAIGCTAILFVALVYVLFAAIIPEVIDSVM 136

Query: 98  LANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF------------LKTNG 145
             +++   VP WL +I    W ++L   + +    +K     F            +    
Sbjct: 137 TISEN---VPGWLQNI--SDWLTKLAKNNANMQAQIKDFFTNFSDKVVEFLNEFLINGGK 191

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK---- 201
            + +    +      L     I+   ++  +   +    + Q   L   +F   W     
Sbjct: 192 TEVVISGVTNSLKSILVLLKDILVGGVSCIYILHERKKFAVQGKMLVYSIFKGKWADKVM 251

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPI 260
           +  +   K+      G  I +I  G++      L  +P  + + V   I  +IP  G  I
Sbjct: 252 EEIKYTDKMFSGFINGKIIDSIIIGILCFIVTSLCRIPYALLISVFVGITNIIPFFGPFI 311

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL--VG 318
                ++ +L+  +        +            L P ++G    L      F +   G
Sbjct: 312 GAIPSALIVLMI-SPIKCLYFIIIIVAIQQFDGNILGPKILGNSTGLSSFWVLFSITFFG 370

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           G+   G  G+ +G  + A++  I +  +    + + +  
Sbjct: 371 GI--WGFAGMVLGVPVFAVLYDIIRRLVKKGLDKRNRTE 407


>gi|323164806|gb|EFZ50598.1| hypothetical protein SS53G_4926 [Shigella sonnei 53G]
          Length = 349

 Score = 66.0 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 43/321 (13%), Positives = 114/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +       +A   V
Sbjct: 14  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITIV 68

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E +S +   N+                       + +   
Sbjct: 69  VVVMLIALTALVGVLAASFNEFISMLPKFNKELT--------------RKLFKLQEMLPF 114

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++  
Sbjct: 115 LNLHMSPERMLQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMR- 173

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+  +
Sbjct: 174 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGVIVWLGLELMGVQFALMWAVLAFL 232

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA IS     I +L+   ++    +     +   ++   L P ++G  + +  
Sbjct: 233 LNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMST 292

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 293 MVVFLSLLIWGWLLGPVGMLL 313


>gi|188589338|ref|YP_001921708.1| permease [Clostridium botulinum E3 str. Alaska E43]
 gi|188499619|gb|ACD52755.1| permease [Clostridium botulinum E3 str. Alaska E43]
          Length = 370

 Score = 66.0 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 51/333 (15%), Positives = 106/333 (31%), Gaps = 8/333 (2%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
            +P + ALI  +   PI   F  + + S     +     +  + I+   F     +  + 
Sbjct: 43  MSPFIYALIFAYILNPIMIIFEKRFKFSRGKSILATYAIITGIIIMFFFFTIPSLVDSIA 102

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH-LSHPQSLKILSETFLKTNGIDFI 149
            ++ +V    +    +  W++        SEL     L     L  +         +  +
Sbjct: 103 SIIKEVPNYMET---IQEWINTAIKNPKLSELIVDAGLVDKIELLSIKMGNFTITILQGM 159

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDG--FSISQQLDSLGEHLFPAYWKKISRIV 207
             +        +      +  +  L    +DG   S+      + +    +   K     
Sbjct: 160 LGYLLSLTGNLVKIVFGFLIAVYVLSD--KDGLLHSLKTITYIILKEKKASELIKACNTY 217

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
            K+I        I +   GL+      +   P  + L +I AI  MIP   P     V  
Sbjct: 218 NKMIGVYIGTKAIDSAIIGLIALIGLIIVKAPYALLLSIIVAITNMIPYFGPFIGEIVGA 277

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            + I  +   A  +F+   +        L P L+G  + +       G++ G    G +G
Sbjct: 278 GVCIFVSPMKALVVFILLLLIQQFDAWYLDPKLIGAKVGVKPFWIIMGVIIGGAFWGPIG 337

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           + +    +A I + +   +   K     +  + 
Sbjct: 338 MLLASPTLATINIYYIRLVKFYKSKNPSLFKDL 370


>gi|161614094|ref|YP_001588060.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167551544|ref|ZP_02345298.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|161363458|gb|ABX67226.1| hypothetical protein SPAB_01833 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|205323625|gb|EDZ11464.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 344

 Score = 66.0 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 48/328 (14%), Positives = 114/328 (34%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ +IL  + F      P + AL I     P+      +         
Sbjct: 7   TLNGLKIVIMLGMLVVILSGIRFAADIIVPFILALFIAVVLNPVVQRMT-RCRIPRVIAV 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +  V ++ L ++ L +L                  N+    +P++ S +   +   E W
Sbjct: 66  SLLIVIIVMLMVLLLAYLGTSL--------------NELARTLPQYRSSLVIPLQRIEPW 111

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +      S+  L++       +  +    ++          SI  +++ + F   +   
Sbjct: 112 LQRAGIGVSVDELAKYIDPNAAMTLVTNLLTQLSNAMS----SIFLLLLTVVFMLLEVPQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + ++L  +     P       +     +    +  T I+I  GLV      +  V     
Sbjct: 168 LPEKLQQMMSR--PVEGMAAIQRALDSVSHYLVLKTAISIVTGLVAWGMLAVLDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++     I +L+    ++A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAALPPIIQVLVFNGFYDALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|229550145|ref|ZP_04438870.1| permease [Enterococcus faecalis ATCC 29200]
 gi|293383073|ref|ZP_06628991.1| putative membrane protein [Enterococcus faecalis R712]
 gi|293387774|ref|ZP_06632318.1| putative membrane protein [Enterococcus faecalis S613]
 gi|307271146|ref|ZP_07552429.1| hypothetical protein HMPREF9498_03232 [Enterococcus faecalis
           TX4248]
 gi|307291349|ref|ZP_07571233.1| hypothetical protein HMPREF9509_01658 [Enterococcus faecalis
           TX0411]
 gi|312900626|ref|ZP_07759923.1| hypothetical protein HMPREF9510_01424 [Enterococcus faecalis
           TX0470]
 gi|312907337|ref|ZP_07766328.1| hypothetical protein HMPREF9492_01657 [Enterococcus faecalis DAPTO
           512]
 gi|312909954|ref|ZP_07768802.1| hypothetical protein HMPREF9493_01028 [Enterococcus faecalis DAPTO
           516]
 gi|312952368|ref|ZP_07771243.1| hypothetical protein HMPREF9504_01491 [Enterococcus faecalis
           TX0102]
 gi|229304731|gb|EEN70727.1| permease [Enterococcus faecalis ATCC 29200]
 gi|291079738|gb|EFE17102.1| putative membrane protein [Enterococcus faecalis R712]
 gi|291082844|gb|EFE19807.1| putative membrane protein [Enterococcus faecalis S613]
 gi|306497580|gb|EFM67113.1| hypothetical protein HMPREF9509_01658 [Enterococcus faecalis
           TX0411]
 gi|306512644|gb|EFM81293.1| hypothetical protein HMPREF9498_03232 [Enterococcus faecalis
           TX4248]
 gi|310626365|gb|EFQ09648.1| hypothetical protein HMPREF9492_01657 [Enterococcus faecalis DAPTO
           512]
 gi|310629752|gb|EFQ13035.1| hypothetical protein HMPREF9504_01491 [Enterococcus faecalis
           TX0102]
 gi|311289912|gb|EFQ68468.1| hypothetical protein HMPREF9493_01028 [Enterococcus faecalis DAPTO
           516]
 gi|311292107|gb|EFQ70663.1| hypothetical protein HMPREF9510_01424 [Enterococcus faecalis
           TX0470]
 gi|315030015|gb|EFT41947.1| hypothetical protein HMPREF9496_01115 [Enterococcus faecalis
           TX4000]
 gi|315033766|gb|EFT45698.1| hypothetical protein HMPREF9500_00121 [Enterococcus faecalis
           TX0017]
 gi|315036852|gb|EFT48784.1| hypothetical protein HMPREF9501_00162 [Enterococcus faecalis
           TX0027]
 gi|315147861|gb|EFT91877.1| hypothetical protein HMPREF9497_01368 [Enterococcus faecalis
           TX4244]
 gi|315155891|gb|EFT99907.1| hypothetical protein HMPREF9503_01658 [Enterococcus faecalis
           TX0043]
 gi|315578453|gb|EFU90644.1| hypothetical protein HMPREF9511_01513 [Enterococcus faecalis
           TX0630]
 gi|315579978|gb|EFU92169.1| hypothetical protein HMPREF9506_03134 [Enterococcus faecalis
           TX0309A]
          Length = 294

 Score = 66.0 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 78/221 (35%), Gaps = 8/221 (3%)

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            NG   I R+    G + L + +S I      FFF  +   ++       +  F  +++ 
Sbjct: 74  QNGASMILRYIQDIGAVGLSFVMSFILS----FFFMIEKKQMADFSKLFLKSDFDWFFQD 129

Query: 203 ISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
           I     K + +          IA+   ++   A  + G     +L ++  I++++P    
Sbjct: 130 IYYFANKFVNTFGVVMEAQFFIAVVNTVITTLALAIIGFTQLPSLAIMIFILSLVPVAGV 189

Query: 260 ISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           I     +S     +G + +   +     I        L P  +    +LP   TF  L+ 
Sbjct: 190 IISCIPLSFIAYSQGGLNDVIYILALITIVHLFESYVLNPKFMSSKTELPIFYTFVILLV 249

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             R  G+ GL +G  +      + K   +   +    +  N
Sbjct: 250 SERLFGVWGLIVGIPVFTFFLDVLKVKPIRGLKRLPNVKKN 290


>gi|329571447|gb|EGG53134.1| hypothetical protein HMPREF9520_02828 [Enterococcus faecalis
           TX1467]
          Length = 294

 Score = 66.0 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 78/221 (35%), Gaps = 8/221 (3%)

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            NG   I R+    G + L + +S I      FFF  +   ++       +  F  +++ 
Sbjct: 74  QNGASMILRYIQDIGAVGLSFVMSFILS----FFFMIEKKQMADFSKLFLKSDFDWFFQD 129

Query: 203 ISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
           I     K + +          IA+   ++   A  + G     +L ++  I++++P    
Sbjct: 130 IYYFANKFVNTFGVVMEAQFFIAVVNTVITTLALAIIGFTQLPSLAIMIFILSLVPVAGV 189

Query: 260 ISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           I     +S     +G + +   +     I        L P  +    +LP   TF  L+ 
Sbjct: 190 IISCIPLSFIAYSQGGLNDVIYILALITIVHLFESYVLNPKFMSSKTELPIFYTFVILLV 249

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             R  G+ GL +G  +      + K   +   +    +  N
Sbjct: 250 SERLFGVWGLIVGIPVFTFFLDVLKVKPIRGLKRLPNVKKN 290


>gi|302187133|ref|ZP_07263806.1| hypothetical protein Psyrps6_12310 [Pseudomonas syringae pv.
           syringae 642]
          Length = 356

 Score = 66.0 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 50/343 (14%), Positives = 109/343 (31%), Gaps = 16/343 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + + ++  +++F+    +  L G  APVL+ L++ F    + S     +      + ++ 
Sbjct: 15  DEEAVVLAVLLFLAFTLVLTLGGMLAPVLAGLVLAFLMHGLVSVLERLRLPEMAAVGLVF 74

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           T+           F+    +  +  +              P  L+     +        H
Sbjct: 75  TL-----------FIGVLLVFLLVLVPLLWHQMITLFNEAPGMLAKWQSVLLLLPERYPH 123

Query: 127 LSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           L   + + +  E      G        F+     + ++  + ++ + I +FFF +D   I
Sbjct: 124 LVSDEQVLLAIEVARGEVGKIGQLALTFSISSLPLLVNLMIYLVLVPILVFFFLKDRHMI 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +           A   +++  + + I +   G  I     G V   A+   G+     L
Sbjct: 184 GRWARGYLPR-ERALINRVADEMKRQIANYIRGKVIEIFICGGVTYIAFAALGLNYAALL 242

Query: 245 GVITAI--MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            ++  I  +    G   ++     I L   G       L +   I   +    L P L  
Sbjct: 243 AMLVGISVVVPYVGAVVVTVPVALIGLFQWGWGDQFIYLMIAHGIIQALDGNVLVPLLFS 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             + L  +     ++      G  G+F    L  L   +    
Sbjct: 303 EAVNLHPVAIICAVLLFGGLWGFWGIFFAIPLATLFKAVLDAW 345


>gi|187735225|ref|YP_001877337.1| protein of unknown function UPF0118 [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425277|gb|ACD04556.1| protein of unknown function UPF0118 [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 370

 Score = 66.0 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 47/323 (14%), Positives = 110/323 (34%), Gaps = 16/323 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + II   L   K    P++ +  +   S+P+ + F S+      +LAV  TV +    +V
Sbjct: 21  VIIITAGLQAGKPVLLPIVLSGFLAIVSYPLTTFFKSRLCF-PHWLAVTFTVIMDFGILV 79

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L +L  Y   ++ + V+      ++   +   + ++   +   +         Q L  L
Sbjct: 80  GLGYLAQYLGQDLAKTVT-----VKYQPLMMEKIHELRAFLIEQDWNNLADQMLQELPDL 134

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                  NG   +       G +      + + +I+  FF    G +   + +       
Sbjct: 135 L------NGQRIVAFSTGVMGQLASMLTFTTLILILMTFFL---GEAPRFRANINKLGHN 185

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
                +        ++   +  T I+   GL+     +   V   +  G++   +  IP 
Sbjct: 186 SDTGIRKFSKALAGVQKYLIIKTFISAVTGLLAFLLCYYMNVDFPLLWGIVAFALNFIPT 245

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ I+    ++  ++  +      +     +    +   L P L+G    +        
Sbjct: 246 FGSIIAAIPPTLLAMLLISPTAGIIVAGGYLVINTALGNCLEPMLLGRQFGIVTSMVLLS 305

Query: 316 LVGGVRTMGLLGLFIGPVLMALI 338
           ++      G +G+ +   +  LI
Sbjct: 306 VIFWGWVWGPIGMLLAVPITMLI 328


>gi|254787526|ref|YP_003074955.1| transporter [Teredinibacter turnerae T7901]
 gi|237683517|gb|ACR10781.1| transport protein [Teredinibacter turnerae T7901]
          Length = 343

 Score = 66.0 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 42/334 (12%), Positives = 113/334 (33%), Gaps = 15/334 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M + + ++    + ++   +Y  +    P++ ++       PI +         S     
Sbjct: 1   MKDLRWMLSCAFLILVCFVVYITRSLVLPIIVSMFFALLLNPIVNYLNRFAVPRS----- 55

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +++V  +   ++ L   F   +  M + V +V   ++        ++    G    + + 
Sbjct: 56  LSSVLTVLTLVIALGLTFSLLVSPMDKWVKQVSKISEDISQKIDEVAKPLTGEAEQKWYQ 115

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                 + +    ++ +    +     F               + +I+  FFF   G S+
Sbjct: 116 LSKDRGEPMSQKIKSQVSVAFMQVATNFTPVV-------LFQALTVIVLTFFFLTHGQSL 168

Query: 185 SQQLDSLGEHLFPAY-WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
            + + +          +  I + +   +    L +++I  G GL +  A +L GV   + 
Sbjct: 169 YRNVVATLPTFRHRRIFVTIGKSIQSDVSYYVLIISVINTGLGLSVAGALYLLGVEDALL 228

Query: 244 LGVITAIMAMIPGGAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            G    I   +P             +  +  G+ + A    +       I  + + P ++
Sbjct: 229 WGAFAGIFNFVPYLGLFVVGVIITGVGFIQFGDNWQALYPVMAFLFLNGIESQVVTPTVL 288

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
           G   ++  L     L      +G++G+ +   ++
Sbjct: 289 GQRFQINPLIVILWLFVFGWLLGVVGMILAVPIL 322


>gi|204927440|ref|ZP_03218641.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204322782|gb|EDZ07978.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 344

 Score = 66.0 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 50/328 (15%), Positives = 117/328 (35%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ +IL  + F      P + AL I     P+       +        
Sbjct: 7   TLNGLKIVIMLGMLVVILSGIRFAADIIVPFILALFIAVVLNPVVQRMTRCRIPR----- 61

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           VIA + ++ + ++ ++ L  Y    + EL             +P++ S +   +   E W
Sbjct: 62  VIAVLLLIVIIVMLMVLLLAYLGTSLNELAR----------TLPQYRSSLVIPLQRIEPW 111

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +      S+  L++       +  +    ++          SI  +++ + F   +   
Sbjct: 112 LQRAGIGVSVDELAKYIDPNAAMTLVTNLLTQLSNAMS----SIFLLLLTVVFMLLEVPQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + ++L  +     P       +     +    +  T I+I  GLV         V     
Sbjct: 168 LPEKLQQMMSR--PVEGMAAIQRALDSVSHYLVLKTAISIVTGLVAWGMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++     I +L+    ++A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAALPPIIQVLVFNGFYDALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|330836258|ref|YP_004410899.1| hypothetical protein Spico_0287 [Spirochaeta coccoides DSM 17374]
 gi|329748161|gb|AEC01517.1| protein of unknown function UPF0118 [Spirochaeta coccoides DSM
           17374]
          Length = 416

 Score = 66.0 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 46/339 (13%), Positives = 106/339 (31%), Gaps = 19/339 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            +P+      ++ +IL  L        P++++L +     P+      K         +I
Sbjct: 26  RSPRTFFGVFLVIVILFVLKVASEVTLPLVTSLFLFLLCNPLLDRL-DKLRTPRWLSTLI 84

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +  +FI    F+       ++ L S           V   L+D+      + +   
Sbjct: 85  VMLLLFLVFIGAGWFMVSTVDTLIRHLPSYANRFILIDNYVTGKLTDMLNIDPDTTVL-- 142

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                          L  N I       +      +        + I +FF   +  S+ 
Sbjct: 143 -------------ALLDINWIQLAMNSLTSLSGKLMTVAKDAALIYIFIFFLLLERQSLV 189

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            +L +            +   V + +    +    I++  G++   A  L  +   V  G
Sbjct: 190 PKLRAALPTDNGRRLMIMLERVNRQVSKYLVLKLFISVVTGVMYYFAALLTHLDFPVLWG 249

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGN---IFNATCLFLWGAIELFIVDKTLRPFLVG 302
           V+  ++  IP    +  T + + + I            + +       ++   + P L G
Sbjct: 250 VLACVINFIPAIGSVVVTTLVVLMSILQFFPIWPQVIYVAVLMISIEMVMGNIIDPRLQG 309

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             + L        L       G++G+ +   L ++I ++
Sbjct: 310 VQLNLSPFVILVSLSLWGYIWGIMGMLLAVPLTSVIQIV 348


>gi|308067414|ref|YP_003869019.1| hypothetical protein PPE_00627 [Paenibacillus polymyxa E681]
 gi|305856693|gb|ADM68481.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 335

 Score = 66.0 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 75/217 (34%), Gaps = 4/217 (1%)

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                      F+ T  +  +        M        ++  II   FF  +   I++  
Sbjct: 108 DRNQWNETIIEFMDTLNVQRLFEPGLSAVMKVSQLGTQLLVSIILSLFFLMEKSYITRFT 167

Query: 189 DSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            +  +     ++K+     R+             +I++   ++   A W+ G P+ + L 
Sbjct: 168 ATFVDSKLGWFFKEVGHFGRMFLGTFGKVLEAQLLISLINCILTTIALWIMGFPNLLGLA 227

Query: 246 VITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           +I  ++ ++P  G  IS   + +     G I     L +   +   I    L P L+   
Sbjct: 228 LIIFVLGLVPVAGVFISLAPLGLIAFSVGGINYVIYLVILIVVIHAIEAYFLNPKLMSSK 287

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             LP   TF  L+     +G+ GL +G  L      +
Sbjct: 288 TNLPIFFTFVVLIFSEHLIGIWGLIVGIPLFVFFLDL 324


>gi|224502735|ref|ZP_03671042.1| hypothetical protein LmonFR_09479 [Listeria monocytogenes FSL
           R2-561]
          Length = 346

 Score = 66.0 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 119/360 (33%), Gaps = 25/360 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  ++ V LY L+     +L   I  F    + +  + +       +
Sbjct: 5   EKLKENDTARRVLVFVLLGVVLYLLRSMIDLILLTFIFAFLVTRLENVILKRVRVPRKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V     V ++      + ++ +LV  +V    +  P    +     G      
Sbjct: 65  VIVLYSLVAVFLYVAIVHFLPILINQISQLVDSLVKLYNN--PSDNTIVKWIVGFLKESN 122

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             K+L                 G+DFI    S  G + L + L++I  +    FF  +  
Sbjct: 123 IQKYLQ---------------AGVDFIIASLSGIGSVGLSFFLALILSL----FFSLEKE 163

Query: 183 SISQQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            ++              +K+     +              +IA+    +   A +L   P
Sbjct: 164 RVTSFTGQFMTSKVGFIFKEAAFFGKKFVSTFGVVLEAQLMIALVNTFITTIALYLMDFP 223

Query: 240 SHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             ++L ++  ++ +IP    I     + +     G   +   + +   I   I    L P
Sbjct: 224 QLLSLSIMVFVLGLIPVAGVIISCIPLVLIAYSVGGFQDVVYILITVVIVHAIETYILNP 283

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            L+     LP   TF  L+      G+ GL +G  +   +  I +       +N+  + +
Sbjct: 284 KLMSSKTNLPVFYTFIILIFSETFFGVWGLIVGIPVFVFLLDILEVRNAEDLKNERYLDA 343


>gi|298290162|ref|YP_003692101.1| hypothetical protein Snov_0146 [Starkeya novella DSM 506]
 gi|296926673|gb|ADH87482.1| protein of unknown function UPF0118 [Starkeya novella DSM 506]
          Length = 346

 Score = 66.0 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 113/338 (33%), Gaps = 26/338 (7%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           +    + ++    + +   +++  +   APV  AL +    WP+      +        A
Sbjct: 2   SARTNRILLGICTVVLAGGAIFLARPVIAPVAFALFVMALVWPLQDRLQRRLPG---LAA 58

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           +  T++V  L +  + +   +G+ +                   RWL    G   A    
Sbjct: 59  MAITLAVTILAVFVVGYATVWGLSQTG-----------------RWLVTNAGRFQALYAE 101

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
           T        L          +    I  F    G +      +++ MI  +     +   
Sbjct: 102 TAAWLEGHGLYSAGTLADTFSASWLIGTFQGLAGRVNGMLGFAVVTMIYVMLGLL-EADI 160

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +L + GE        + S       R+  +  T++++  GL + +     G+   +A
Sbjct: 161 VRDKLLAAGE--AGGRLVRASAATAAKFRTYMMVRTVMSVLTGLFVWAVTAALGLDLALA 218

Query: 244 LGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            GV+   +  IP   P+          L   G+   A  +F+   +  F     + P + 
Sbjct: 219 FGVMAFALNYIPFIGPLVATLLPTFFALAQFGSWEAAVLVFVAMNVIQFFSGSYIEPRVA 278

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALI 338
           G  + +        +       G+ G FIG P+++A +
Sbjct: 279 GRALAMSPFLVLLSVFFWAFMWGIAGAFIGVPLVIAAL 316


>gi|291521293|emb|CBK79586.1| Predicted permease [Coprococcus catus GD/7]
          Length = 449

 Score = 66.0 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 44/322 (13%), Positives = 114/322 (35%), Gaps = 13/322 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESST----------FLAVIATVSVMCLFIVPLLF 80
            +P L A +I +   P+ +         +              ++A V V+    + L F
Sbjct: 68  LSPFLIAFLIAYFINPLVNRIDHILFSRTASQKFAKLHKFLSLLLAYVIVIGFIALVLTF 127

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLS-DIPGGMWASELWTKHLSHPQSLKILSET 139
           +    +  + EL+ +        +     L+   P   +A  + T + + P ++   S  
Sbjct: 128 VIPQIVESILELIRQSSSLYDTIMTNLNLLNERYPNIDFAYIIDTINNALPNAI--NSVQ 185

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            + T+ +  I           ++  L+ +     +   +R    + + + +L +      
Sbjct: 186 AVMTDIVPMIYNAGMSIISWIINIILAFVISCYLMSSKHRIIHGMKRIIYALFDQKTAYK 245

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
                +    +     +G  + ++  G++      +  +   + + +I  +  MIP   P
Sbjct: 246 VIFTIKECNHIFGQYIIGKALDSLIIGIICFVLMCILHLQYALLISIIVGMTNMIPYFGP 305

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                  + +L+  +   A    +   +        L P ++G    L  +   F +  G
Sbjct: 306 FIGAIPGLIILLIISPKQALIFLILIFLLQQFDGTILGPKILGDSTGLSPIWIIFAITVG 365

Query: 320 VRTMGLLGLFIGPVLMALIAVI 341
             T G++G+F+G  ++A++  +
Sbjct: 366 GATCGVVGMFLGVPIIAVLVYL 387


>gi|238916040|ref|YP_002929557.1| hypothetical protein EUBELI_00073 [Eubacterium eligens ATCC 27750]
 gi|238871400|gb|ACR71110.1| Hypothetical protein EUBELI_00073 [Eubacterium eligens ATCC 27750]
          Length = 356

 Score = 66.0 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 49/330 (14%), Positives = 113/330 (34%), Gaps = 7/330 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I+ ++      L  +  P + A                   E  T  A I    V  +
Sbjct: 19  AVIIAVVFFIFKVLFYYVWPFMLAFCFAVLLQKPIVGLAKLLREKKTLAASIVVTMVTLI 78

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +  LL++ Y    E+K+ ++                  +        +  K        
Sbjct: 79  ILSVLLYVGYMAFRELKDFIANFDENINS----LDGQFKLVCCRIDGWIKLKEGCSYAFF 134

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           +      +  +G         +  +  + +C+  +  ++  F       +  ++  S  E
Sbjct: 135 EKCKGIIIDGDGQQMFFTIMRKHSVPVITWCVMAVAGLVVCFIGTIYAAAGIEKYRSWRE 194

Query: 194 H-LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           + +F      +   +  +I   F    II     +V  +A+ + G P  + LGV+T I+ 
Sbjct: 195 NTIFKGEVGAVHVGLRNLINVYFRVQLIIMSINIVVCSTAFLMIGNPYAILLGVLTGIID 254

Query: 253 MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +P  G        ++  L+ G++ NA  L +   +  F+ +  +    +G  + +    
Sbjct: 255 ALPIFGTGTVLIPWAVGSLLFGHVKNAVILVVLYIVTYFVRE-IMESKCMGDRMGIAPFT 313

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
               +  G+   G++G  +GP+   +I  +
Sbjct: 314 MLAVIYIGILVYGVVGFILGPISYCIIKAL 343


>gi|239616654|ref|YP_002939976.1| protein of unknown function UPF0118 [Kosmotoga olearia TBF 19.5.1]
 gi|239505485|gb|ACR78972.1| protein of unknown function UPF0118 [Kosmotoga olearia TBF 19.5.1]
          Length = 688

 Score = 66.0 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 80/217 (36%), Gaps = 15/217 (6%)

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK--- 202
           ++ IP  AS    I     +     I   F+F             L   L+P  +++   
Sbjct: 478 LEKIPNIASETFTIVFFVVIG---SIYTSFYF--------AFFKRLAPKLYPRQYRRIAA 526

Query: 203 -ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
              R +   ++   L +  IA+  G+ +G      G+   + +G   AI  ++P    I 
Sbjct: 527 NFLRELHGNMKRYILSILFIALIVGITVGLLIKFLGLGYSLLIGFWAAITNLVPVVGVIF 586

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
                I L+      +   +F+   I +      +   L+G   ++  +     ++   +
Sbjct: 587 EIVPIILLIAAQPSLSGLIIFVIALIAIHSAAFIIFLKLMGDYNRVNPVMVILLVLFMGQ 646

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            +G+LG F+   +  L+  +WK       E++  ++ 
Sbjct: 647 LLGILGAFLAAPVAILLKQLWKHFFEPWLESENSVNE 683


>gi|256422377|ref|YP_003123030.1| hypothetical protein Cpin_3362 [Chitinophaga pinensis DSM 2588]
 gi|256037285|gb|ACU60829.1| protein of unknown function UPF0118 [Chitinophaga pinensis DSM
           2588]
          Length = 367

 Score = 66.0 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 52/339 (15%), Positives = 119/339 (35%), Gaps = 15/339 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           N +     + + +I+           P+  A+++     P+ +     +         +A
Sbjct: 9   NARLAYTLLCIILIIYVARLGHELIIPLAFAMLVSIMLLPMANQLEKWRFSR-----GLA 63

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
             +V+ LF++ LL +      +M   V+      Q  +     L       +  +   + 
Sbjct: 64  AFTVIFLFVIMLLGILLLLAAQMGSFVADFPQLQQQLLTSLNSLQQWINVKFHIDTARQM 123

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
               Q       +         +   +    +IF+      + +  +L F          
Sbjct: 124 DYLEQMAMGTLGSATGFISSTLLSLSSLLIFVIFVLLYSFFLLLYRSLIF---------T 174

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L  L           +      +I+    G+ I  +   +V  +  W+ GV     LG+
Sbjct: 175 FLIRLFREKHRDKLLDVVMQTRYIIKGYVSGLMIEMLVVAVVNCAMLWIFGVKYATLLGI 234

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPI 305
           + A+  +IP       T + + L +  +   A+     G + +  +D   L P ++G  +
Sbjct: 235 MAALFNLIPYLGIYVATIICMLLTLTNSSLAASIQVGAGLLLVHFLDSNILLPRIMGSKV 294

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           K+  L T  G+V G    G+ G+F+    +A++ ++++ 
Sbjct: 295 KINALVTILGVVSGNLIWGVPGMFLAIPFIAILKIVFEH 333


>gi|227891477|ref|ZP_04009282.1| integral membrane protein [Lactobacillus salivarius ATCC 11741]
 gi|227866624|gb|EEJ74045.1| integral membrane protein [Lactobacillus salivarius ATCC 11741]
          Length = 351

 Score = 66.0 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 55/355 (15%), Positives = 127/355 (35%), Gaps = 23/355 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  L  + + R+ ++  ++  LY  +   + +L   I  F    +  +   K +  S  +
Sbjct: 7   QRFLGNERLRRFTVLLFLVGVLYLARSMMSLILLTFIFSFLVISLNDAIRKKIDIPSKLI 66

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            +I  + ++    + +       +++ + LV+ +V    H            G      +
Sbjct: 67  VIIVYLLMIGGIYLAITIYLPKLVIQTENLVNYIVKFYNHPP---------KGTNDVINM 117

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            T+++S    +K +        G+  I ++ +  G       ++ I  ++  FFF  D  
Sbjct: 118 VTQYISQSDIMKQMR------GGMSIIVKYLANIGT----MGMTFIMALLLSFFFTIDKD 167

Query: 183 SISQQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            + +   S  +  +  ++      ++I             IIA+    +  +      +P
Sbjct: 168 DLFKFSKSFLKGPYSWFFNDVYYFAKIFVNSFGVVLETQFIIALINTAITTTILACMKMP 227

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              +L ++   M+MIP  G  IS   + +     G +     + +   +   +    L P
Sbjct: 228 QLFSLALLIFFMSMIPVAGVIISAIPMMLIGYTVGGVKYIIYIIIMLCVVHALEAYVLNP 287

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L+    +LP   TF  L       G+ GL +G  +   +  I       I+  +
Sbjct: 288 KLMSSRTELPIFYTFVVLYVSEHLFGMWGLIVGIPVFTFLLDILGVKSDHIRRER 342


>gi|90419553|ref|ZP_01227463.1| conserved hypothetical membrane protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336490|gb|EAS50231.1| conserved hypothetical membrane protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 351

 Score = 66.0 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 54/330 (16%), Positives = 111/330 (33%), Gaps = 11/330 (3%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +   ++  +LY    F  PV+ AL+      P+      + +      A    V  +   
Sbjct: 4   IFFILLFGALYLTASFVLPVIIALLFALVMSPVVRFLRRRLKIWEPISAFFLVVGALVTM 63

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           ++    L       + +        +Q    V    + +       E       +  +  
Sbjct: 64  VLGFYMLSDPITNIVNDAPRYAAAVDQELRSVQERFARLEAAQQNVE--QAAARNAPNDG 121

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
              E  +K  G                    S+ F ++ LFF    G    Q+L      
Sbjct: 122 QPDEVVVKNPG------LLDNVTTAAPQIVASVGFSLVFLFFLLASGDLFYQKLVRAMPT 175

Query: 195 LFP-AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           L        I+  + + +      +T+I +  GL +G+  W  G+P+ +  G +  ++  
Sbjct: 176 LSDKKRALNIAHEIERELSRYLFTITLINVTLGLTIGTLLWWVGMPTPIIFGALATLLNF 235

Query: 254 IPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           IP    +   F    I L   G++ NA    L       +  + + P +VG  +++    
Sbjct: 236 IPYIGALIGMFLVGVIALAEFGSLSNALAPVLVYLACTTVEGQLVTPMIVGRRLEMNAAA 295

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            F  +       G++G+F+   +M  + V+
Sbjct: 296 VFLSVAFWGWIWGVVGMFLAVPVMVALKVL 325


>gi|330941878|gb|EGH44605.1| PerM family membrane protein [Pseudomonas syringae pv. pisi str.
           1704B]
 gi|330975308|gb|EGH75374.1| PerM family membrane protein [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 356

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 109/343 (31%), Gaps = 16/343 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + + ++  +++F+    +  L G  APV++ L++ F    + S     +      + ++ 
Sbjct: 15  DEEAVVLAVLLFLAFTLVLTLGGMLAPVIAGLVLAFLMHGLVSVLERLRMPEVAAVGLVF 74

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           T+           F+    +  +  +              P  L+     +        H
Sbjct: 75  TL-----------FIGVLLVFLLVLVPLLWHQLITLFNEAPGMLAKWQSVLLLLPERYPH 123

Query: 127 LSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           L   + + +  E      G        F+     + ++  + ++ + I +FFF +D   I
Sbjct: 124 LVSDEQVLLAIEVARGEVGKIGQLALTFSISSLPLLVNLMIYLVLVPILVFFFLKDRHMI 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +           A   +++  + + I +   G  I     G V   A+   G+     L
Sbjct: 184 GRWARGYLPR-ERALINRVADEMKRQIANYIRGKVIEIFICGGVTYIAFAALGLNYAALL 242

Query: 245 GVITAI--MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            ++  I  +    G   ++     I L   G       L +   I   +    L P L  
Sbjct: 243 AMLVGISVVVPYVGAVVVTVPVALIGLFQWGWGDQFIYLMIAHGIIQALDGNVLVPLLFS 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             + L  +     ++      G  G+F    L  L   +    
Sbjct: 303 EAVNLHPVAIICAVLLFGGLWGFWGIFFAIPLATLFKAVLDAW 345


>gi|325845516|ref|ZP_08168806.1| putative membrane protein [Turicibacter sp. HGF1]
 gi|325488470|gb|EGC90889.1| putative membrane protein [Turicibacter sp. HGF1]
          Length = 385

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 57/323 (17%), Positives = 119/323 (36%), Gaps = 6/323 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIATVSVMCLFIVPLLFLFYY 84
           F+ GF    L   I+ F    ++  FI   ++S      +++ ++   +F V + F+   
Sbjct: 50  FIIGFIIAYLINFILKFYEDRVFKKFIKGSKKSLRGVAVILSYLTASLIFYVFIQFVVPQ 109

Query: 85  GMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
            +  +  LV+ +        + + + L++         L    L+   +  +   T L  
Sbjct: 110 LVESITGLVNDIPRYLYDMKVILEQTLNETDISPEYMTLINDKLTEITNWVLQLVTNLLP 169

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
                +  FAS    I L   +S+  ++    FF      +    +    ++      + 
Sbjct: 170 IIGGIVMAFASSVWNIILGIIISVYLLVDKEKFFALGKKVVVALFNDKHANIILNLANRT 229

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
           +    K I     G  I +   G++      +  +P  + + VI  I  +IP   P    
Sbjct: 230 NLTFGKFIG----GKIIDSAIIGVLTFIILTIFKMPYSLLISVIIGITNIIPFFGPFIGA 285

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             S  +++  +   A    +   +   I    + P ++G  I +      F ++   +  
Sbjct: 286 IPSAIIILFISPIKAVWFGVIILVIQQIDGNIIGPKILGDSIGISAFWILFAILVAGKLF 345

Query: 324 GLLGLFIGPVLMALIAVIWKESI 346
           GL+G+ IG  + ALI  I K+ I
Sbjct: 346 GLVGMIIGVPMFALIYSIVKDVI 368


>gi|15806207|ref|NP_294912.1| permease [Deinococcus radiodurans R1]
 gi|6458923|gb|AAF10755.1|AE001967_8 permease, putative [Deinococcus radiodurans R1]
          Length = 444

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 60/165 (36%)

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +   +             +    + K +        ++ +  G        L  V + + 
Sbjct: 191 LVNGVLGAVPPRHRLPAARALAQILKQLGGWGRATVLVMLVTGSCTALGLMLLKVDNWLI 250

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            G++ A+  ++P   PI  T  S+      +      + L+  +   +    L PFL+GG
Sbjct: 251 FGILAALGELVPNIGPIVATIPSVLFAAADDPQKGLYVALFVLVFQQVSGFVLGPFLLGG 310

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             KL  L    G++      G++G F+    + +I  I++E  + 
Sbjct: 311 AGKLHPLSVTVGVLLFGSVFGIVGAFLTVPFLIIIKAIYQEFYLQ 355


>gi|270291439|ref|ZP_06197661.1| permease [Pediococcus acidilactici 7_4]
 gi|304385152|ref|ZP_07367498.1| permease [Pediococcus acidilactici DSM 20284]
 gi|270280285|gb|EFA26121.1| permease [Pediococcus acidilactici 7_4]
 gi|304329346|gb|EFL96566.1| permease [Pediococcus acidilactici DSM 20284]
          Length = 350

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 59/357 (16%), Positives = 121/357 (33%), Gaps = 19/357 (5%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             + +  W  +  +L+ +Y L+GF + +L  +I  F +     +       +     +I 
Sbjct: 9   QKKSVQLWTTLAALLLIVYLLRGFMSQILLIVIFSFVAHVGIKNIRKYLHVNQPLGTLIF 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
              ++    V   F       ++K + + +  A        ++   I            +
Sbjct: 69  YSVLLAFAAVVFSFTASMLYDQLKGIPALIGQAINSDAFNNKYFQGI-----------IN 117

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                +  +     L  +G++ + R       + +   LS++F +      Y        
Sbjct: 118 EIAKNTTAVKGSQHLAMSGLNQLGRIGIAAEHVMIALFLSLVFNLT-----YNHLREFGH 172

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +              + R    ++ +      II      ++    W+ G+P  + + +
Sbjct: 173 AILHSRYQGLFNLVYYLLRKYVLILGTVIETQLIICSINTGLMVIGLWIIGIPKLLLMAI 232

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           I  ++ +IP  G  IS   +SI       + +   +    A+  F     L P L+ G  
Sbjct: 233 IVFVLGLIPVAGVLISLIPLSIVAFSANGLVSVVEVLALVAVIHFFESYFLHPRLMAGAT 292

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW--KESIMAIKENKEKISSNF 360
            LP   TF  L+ G + +G  GL +G   +A    +   K      K  KE I   F
Sbjct: 293 DLPVFVTFITLIIGAKMIGTWGLIVGIPTVAFFIDLLGIKIKRRRPKNPKEAIEEEF 349


>gi|229818722|ref|YP_002880248.1| protein of unknown function UPF0118 [Beutenbergia cavernae DSM
           12333]
 gi|229564635|gb|ACQ78486.1| protein of unknown function UPF0118 [Beutenbergia cavernae DSM
           12333]
          Length = 364

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/343 (11%), Positives = 103/343 (30%), Gaps = 19/343 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G++   +  +   +L  L+G    ++ A  +     P     +          A +A + 
Sbjct: 2   GVVAVFVGILSWYALGSLQGLGVNLVIAFFVALALEPAVVWLVRH-GWRRGAAAGVALLG 60

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + +  V L       + ++ +LVS +         V   + +   G +   +       
Sbjct: 61  SIIVIAVVLALFGNLFVQQLIQLVSNL-------PDVYATIQEWVEGQFGVVVPDSDDLI 113

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            Q+L+   +          +   A   G   +    +   +++  ++    G      + 
Sbjct: 114 RQALEQWGDD---------VASGALAVGAGIVGGLFAASVILLVAYYLLAAGPKFRASIC 164

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                       ++  I    +        ++A            + G P  + L V T 
Sbjct: 165 RWLTPNRQEEVLRMWEITQVKVSDFINTRIVLAALSTTFTFVFLLIMGTPYALPLAVFTG 224

Query: 250 IMA-MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           +++  +P  G  I      +  L    I     +  +      + +    P +    +++
Sbjct: 225 VVSQFVPTIGTYIGGALPVVVALAAQGIGYGLAVTAFIVGYQQVENLIFSPKVSARALEM 284

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
               +F  ++      G LG F+   + A I  I    +   +
Sbjct: 285 NPAVSFVAVLAFGAVFGPLGAFLALPIAATIQAIGNTYMRRHE 327


>gi|168819237|ref|ZP_02831237.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|197249301|ref|YP_002146564.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197213004|gb|ACH50401.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|205343801|gb|EDZ30565.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320086041|emb|CBY95815.1| UPF0118 membrane protein HI0338 [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 344

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/328 (14%), Positives = 114/328 (34%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ +IL  + F      P + AL I     P+      +         
Sbjct: 7   TLNGLKIVIMLGMLVVILSGIRFAADIIVPFILALFIAVVLNPVVQRMT-RCRIPRVIAV 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +  V ++ L ++ L +L                  N+    +P++ S +   +   E W
Sbjct: 66  SLLIVIIVMLMVLLLAYLGTSL--------------NELARTLPQYRSSLVIPLQRIEPW 111

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +      S+  L++       +  +    ++          SI  +++ + F   +   
Sbjct: 112 LQRAGIGVSVDELAKYIDPNAAMTLVTNLLTQLSNAMS----SIFLLLLTVVFMLLEVPQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + ++L  +     PA      +     +    +  T I+I  GLV         V     
Sbjct: 168 LPEKLQQMMSR--PAEGMAAIQRALDSVSHYLVLKTAISIVTGLVAWGMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++     I +L+    ++A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAALPPIIQVLVFNGFYDALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|330989400|gb|EGH87503.1| PerM family membrane protein [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 356

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 109/343 (31%), Gaps = 16/343 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + + ++  +++F+    +  L G  APV++ L++ F    + S     +      + ++ 
Sbjct: 15  DEEAVVLAVLLFLAFTLVLTLGGMLAPVIAGLVLAFLMHGLVSVLERLRMPEMAAVGLVF 74

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           T+           F+    +  +  +              P  L+     +        H
Sbjct: 75  TL-----------FIGALLLFLLVLVPLLWHQLITLFNEAPGMLAKWQSVLLLLPERYPH 123

Query: 127 LSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           L   + + +  E      G        F+     + ++  + ++ + I +FFF +D   I
Sbjct: 124 LVSDEQVLLAIEVARGEVGKIGQLALTFSISSLPLLVNLMIYLVLVPILVFFFLKDRHMI 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +           A   +++  + + I +   G  I     G V   A+   G+     L
Sbjct: 184 GRWARGYLPR-ERALINRVADEMKRQIANYIRGKVIEIFICGGVTYIAFAALGLNYAALL 242

Query: 245 GVITAI--MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            ++  I  +    G   ++     I L   G       L +   I   +    L P L  
Sbjct: 243 AMLVGISVVVPYVGAVVVTVPVALIGLFQWGWGDQFIYLMIAHGIIQALDGNVLVPLLFS 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             + L  +     ++      G  G+F    L  L   +    
Sbjct: 303 EAVNLHPVAIICAVLLFGGLWGFWGIFFAIPLATLFKAVLDAW 345


>gi|237798975|ref|ZP_04587436.1| permease [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021829|gb|EGI01886.1| permease [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 298

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 109/292 (37%), Gaps = 14/292 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +++  +  L     P L AL++ +   P+                   T+SV+ +F +
Sbjct: 15  LALLVAFVVLLHTILTPFLVALLLAYMGDPLVDRLERAGLSR--------TLSVVVVFGL 66

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLK 134
             L L    ++ +  L  ++    +    +  WL    +P       L        +   
Sbjct: 67  FTLVLMTLLLVLVPMLAKQLFRLYELAPQILDWLQHSAMPWVQAKFGLADGFWKFDKIKA 126

Query: 135 ILSETFLKT-NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            +SE   +  + +  +   A+   +  + +  +++ + +  F+  RD   ++ ++  L  
Sbjct: 127 AISEHMGQAGDIVSIVLSQATASSLALIGWLTNLVLIPVVCFYLLRDWDIMTGKIRGLLP 186

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   K++    +V+ +   G  ++ +G G++  +   L G+   + +GVI  + A+
Sbjct: 187 RQREGQIVKLAGECHEVLGAFIRGQLLVMVGLGVIYAAGLMLVGLELGLLIGVIAGLAAI 246

Query: 254 IPGGAPISFTAVSIY---LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           +P    +     ++        G+++    +     I   +    L P LVG
Sbjct: 247 VPYMGFVIGIGAALIAGLFQFGGDLYPMMGIVAVFMIGQALEGMVLTPLLVG 298


>gi|152972348|ref|YP_001337494.1| PerM family permease [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238896937|ref|YP_002921682.1| putative PerM-family permease [Klebsiella pneumoniae NTUH-K2044]
 gi|262040540|ref|ZP_06013781.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330000595|ref|ZP_08303741.1| autoinducer 2 exporter TqsA [Klebsiella sp. MS 92-3]
 gi|150957197|gb|ABR79227.1| putative permease (PerM family) [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238549264|dbj|BAH65615.1| putative PerM-family permease [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|257167906|gb|ACV49727.1| putative transport protein [Klebsiella pneumoniae]
 gi|259042133|gb|EEW43163.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328537967|gb|EGF64143.1| autoinducer 2 exporter TqsA [Klebsiella sp. MS 92-3]
          Length = 349

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/321 (14%), Positives = 113/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + IIL  ++        +L AL       P+ + FI +      F   +   ++
Sbjct: 14  LLKLAALVIILAGIHAAADILVQLLLALFFAIVLNPLVTWFIRR-GVRRPFAITLVVTAM 72

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +    L  L       +  L        +  + +  +L  +                 
Sbjct: 73  LVMLTALLGVLAASLNDFVAMLPDFNRALTRKILQLQEYLPFL----------------- 115

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L I  E  L+    + +  +A+           SI+ +++ + F   +   +  +L  
Sbjct: 116 -NLHINPERMLRRMDSERLMTWATTLMTQLSGAMASIVLLVMTVIFMLFEVRHLPYKLR- 173

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   +I++  GL++       GV   +  GV+  +
Sbjct: 174 FALNNPRLHIAGLHRALKGVTHYLALKT-LISLWTGLIVWLGLLAMGVQFALMWGVLAFL 232

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  G+ IS     +  L+   I+    +     +   ++   + P ++G  + +  
Sbjct: 233 LNYVPNIGSAISAIPPMLQALLFSGIYECLLVGALFLVVHMVLGNMVEPRMMGHRLGMST 292

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           L  F  L+     +G +G+ +
Sbjct: 293 LVVFLSLLVWGWLLGPVGMLL 313


>gi|168235560|ref|ZP_02660618.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194735679|ref|YP_002114495.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|194711181|gb|ACF90402.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197291058|gb|EDY30411.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
          Length = 344

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/328 (14%), Positives = 113/328 (34%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ +IL  + F      P + AL I     P+      +         
Sbjct: 7   TLNGLKIVIMLGMLVVILSGIRFAADIIVPFILALFIAVVLNPVAQRMT-RCRIPRVIAV 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +  V ++ L ++ L +L                  N+    +P++ S +   +   E W
Sbjct: 66  SLLIVIIVMLMVLLLAYLGTSL--------------NELARTLPQYRSSLVIPLQRIEPW 111

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +      S+  L++       +  +    ++          SI  +++ + F   +   
Sbjct: 112 LQRAGIGVSVDELAKYIDPNAAMTLVTNLLTQLSNAMS----SIFLLLLTVVFMLLEVPQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + ++L  +     P       +     +    +  T I+I  GLV         V     
Sbjct: 168 LPEKLQQMMSR--PVEGMAAIQRALDSVSHYLVLKTAISIVTGLVAWGMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++     I +L+    ++A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAALPPIIQVLVFNGFYDALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|183980476|ref|YP_001848767.1| transmembrane protein [Mycobacterium marinum M]
 gi|183173802|gb|ACC38912.1| conserved transmembrane protein [Mycobacterium marinum M]
          Length = 389

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/310 (12%), Positives = 99/310 (31%), Gaps = 13/310 (4%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
           ++  +         +  +    +    L F+    ++ + +L  +V  +        +WL
Sbjct: 64  WLDARGLPRGAAVSLVLLGGFSILGGILTFVISQFIVGLPDLAYQVEHSIDSSR---KWL 120

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
            + P  +   ++     +  ++L               +   A        +   + + +
Sbjct: 121 IEGPPHLRREQIDNAGNAAIEALHNNQAK---------LTSGAISTAATITELLTAAVLV 171

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           +  L FF   G +I Q +  +             R     +        ++A+ +   +G
Sbjct: 172 LFTLIFFLYGGRNIWQYVAKIIPAHVRDRAMAAGRAGYGSLIGYVRATFLVALTDAAGVG 231

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
           +   + GVP  + L  I  + A IP  GA IS     +  L+   +  A           
Sbjct: 232 TGLAVMGVPLALPLASIVFLGAFIPLIGALISGLLAVVVALLAKGLVYALLTLALLITVN 291

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            +    L+P ++G  + +  L     +  G    G++G  +    +A +    +  +   
Sbjct: 292 QLEAHLLQPLVMGRAVSIHPLGVVLAISTGGVLAGIVGALLAVPTVAFLNNAMRVLLAED 351

Query: 350 KENKEKISSN 359
              + +    
Sbjct: 352 PIAEAQQQDQ 361


>gi|71735665|ref|YP_273787.1| PerM family membrane protein [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71556218|gb|AAZ35429.1| membrane protein, PerM family [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 356

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/343 (14%), Positives = 108/343 (31%), Gaps = 16/343 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + + ++  +++F+    +  L G  APV++ L++ F    + S     +       AV  
Sbjct: 15  DEEAVVLAVLLFLAFTLVLTLGGMLAPVIAGLVLAFLMHGLVSVLERLRM--PELAAVGL 72

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
             ++         F+    +  +  +              P  L+     +        H
Sbjct: 73  VFTL---------FIGVLLLFLLVLVPLLWHQLITLFNEAPGMLAKWQSVLLLLPERYPH 123

Query: 127 LSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           L   + + +  E      G        F+     + ++  + ++ + I +FFF +D   I
Sbjct: 124 LVSDEQVLLAIEVARGEVGKIGQLALTFSISSLPLLVNLMIYLVLVPILVFFFLKDRHMI 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +           A   +++  + + I +   G  I     G V   A+   G+     L
Sbjct: 184 GRWARGYLPR-ERALINRVADEMKRQIANYIRGKVIEIFICGGVTYIAFAALGLNYAALL 242

Query: 245 GVITAI--MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            ++  I  +    G   ++     I L   G       L +   I   +    L P L  
Sbjct: 243 AMLVGISVVVPYVGAVVVTVPVALIGLFQWGWGDQFIYLMIAHGIIQALDGNVLVPLLFS 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             + L  +     ++      G  G+F    L  L   +    
Sbjct: 303 EAVNLHPVAIICAVLLFGGLWGFWGIFFAIPLATLFKAVLDAW 345


>gi|282895571|ref|ZP_06303705.1| Protein of unknown function UPF0118 [Raphidiopsis brookii D9]
 gi|281199411|gb|EFA74275.1| Protein of unknown function UPF0118 [Raphidiopsis brookii D9]
          Length = 358

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/282 (15%), Positives = 99/282 (35%), Gaps = 10/282 (3%)

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            ++++ + ++ ++ L   G++ +  +  ++         +P W+S     + A   W   
Sbjct: 66  ILAIVGVLLLTIVMLGAIGVILLPLIFQQLNELINI---LPAWISSGTQQLQAFLDWAAT 122

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD---YCLSIIFMIIALFFFYRDGFS 183
                   I   T L     + I  F  +      D   + L++I  I+   +   +G  
Sbjct: 123 QQDLPVNIIGIATQLLEKISNQIQSFTGKILSFAFDTIGFLLNLILTIVLTIYLILNGEK 182

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +   L             K   ++ +  ++ F+G   +    G+ +   +    +P  + 
Sbjct: 183 LWDGLYGWLPTYLGV---KARALLKEDFQNYFIGQATLGAVLGVTVTLTFIALKIPPSLI 239

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           +       ++ P G  I    VS+ L+   N + A  + L       I    + P L+G 
Sbjct: 240 IWNYHWFFSLFPFGTGIGIGIVSL-LIALENFWQAVEVALIAVTIDQINSNIVAPRLLGN 298

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
              L  +     L+ G +  G+LGL I   + + I       
Sbjct: 299 LTGLNPVWVVISLLVGAKLGGVLGLLIAIPIASFIKDFADIW 340


>gi|242373168|ref|ZP_04818742.1| permease [Staphylococcus epidermidis M23864:W1]
 gi|242349119|gb|EES40720.1| permease [Staphylococcus epidermidis M23864:W1]
          Length = 361

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/331 (12%), Positives = 114/331 (34%), Gaps = 15/331 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS-VMCLFIVPLLFLFYYGMLEM 89
           F P L +  + +   P  +     K     + +++     ++ +  + + F+    +  +
Sbjct: 41  FLPFLISGFLFYICLPFQNLLE--KWGFPRWASILTIFIGLIAIIAIVVSFIAPIIISNI 98

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             L+ +     +    +  +   +       +  T  ++          T + +N + +I
Sbjct: 99  NNLIKQTPALQKEAEHLINF--SLKQMDKLPDDVTHRINKAVRSMGDGVTSILSNSVTYI 156

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
             F S            +I +   L +  +D       +    +     +   + + +  
Sbjct: 157 TSFIST--------VFLLIMVPFFLIYMLKDHEKFIPAIGKFFKGERKVFVVDLLKDLNF 208

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIY 268
            ++S   G   +++  G++L   Y + G+P    L +   +  +IP  G  +SF   +I 
Sbjct: 209 TLKSYIQGQVTVSVILGIILYIGYTIIGLPYTPLLVLFAGVANLIPFLGPGLSFAPAAIL 268

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
            +I G       + +   +   +    + P ++G  + +  L     ++      G   +
Sbjct: 269 GIIDG-PTTFIWVCIVTLVAQQLEGNVITPNVMGKSLSIHPLTIIVVILAAGDLGGFTLI 327

Query: 329 FIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            I   L A++  +        +   +K +SN
Sbjct: 328 LIAVPLYAVLKTLVSNIFKYRQRIIDKANSN 358


>gi|325128242|gb|EGC51127.1| putative membrane protein [Neisseria meningitidis N1568]
 gi|325134534|gb|EGC57179.1| putative membrane protein [Neisseria meningitidis M13399]
          Length = 344

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 126/336 (37%), Gaps = 10/336 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
              ++  ++ L     P   A ++ +   P+      KK  +    ++   V  + L + 
Sbjct: 7   FAALVWLVFALGDTLTPFAVAAVLAYVLDPLVEWL-QKKGLNRASASMSVMVFSLILLLA 65

Query: 77  PLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            LL +    + +   L S++  L       +  WL +  GG      + +         +
Sbjct: 66  LLLIIVPMLVGQFNNLASRLPQLIGFMQNTLLPWLKNTIGG------YVEIDQASIIAWL 119

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            + T   +N +        R G   +    +++ + + L++F  D    S  +  L    
Sbjct: 120 QAHTGELSNALKAWFPVLMRQGGNIVSSIGNLLLLPLLLYYFLLDWQRWSCGIAKLVPRR 179

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +P
Sbjct: 180 FAGAYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLVLVGLDSGFAIGMVAGILVFVP 239

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGGPIKLPFLPTF 313
                +   ++    +         L +W    +  F+    + P +VG  I L      
Sbjct: 240 YLGAFTGLLLATVAALLQFGSWNGILSVWAVFAVGQFLESFFITPKIVGDRIGLSPFWVI 299

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           F L+   + MG +G+  G  L A+  V+ +E +   
Sbjct: 300 FSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVQKY 335


>gi|306816182|ref|ZP_07450320.1| inner membrane protein YhhT [Escherichia coli NC101]
 gi|305850578|gb|EFM51035.1| inner membrane protein YhhT [Escherichia coli NC101]
          Length = 349

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/323 (13%), Positives = 114/323 (35%), Gaps = 22/323 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +++   + +IL  ++        +L AL       P+ + FI +  +       +A  
Sbjct: 12  RILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAIT 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ + ++ L  L         E +S +   N+                       + + 
Sbjct: 67  IVVVVMLIALTALVGVLAASFNEFISMLPKFNKELT--------------RKLFKLQEML 112

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++
Sbjct: 113 PFLNLHMSPERILQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKM 172

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                +    +   + R +  V     L   + ++  G+++     L G    +   V+ 
Sbjct: 173 R-FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGIIVWLGLELMGAQFALMWAVLA 230

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++  +P  GA IS     I +L+   I+    +     +   ++   L P ++G  + +
Sbjct: 231 FLLNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGM 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFI 330
             +  F  L+     +G +G+ +
Sbjct: 291 STMVVFLSLLIWGWLLGPVGMLL 313


>gi|283798475|ref|ZP_06347628.1| putative sporulation integral membrane protein YtvI [Clostridium
           sp. M62/1]
 gi|291073733|gb|EFE11097.1| putative sporulation integral membrane protein YtvI [Clostridium
           sp. M62/1]
          Length = 356

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/344 (14%), Positives = 106/344 (30%), Gaps = 13/344 (3%)

Query: 13  RWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKEES---STFLAVI 65
           + +++  +   +Y         F P  +A +      P  +    + +       F   I
Sbjct: 10  KALVVIAVTAGVYVSFKYFLPLFLPFAAAYLTALILRPTAAWLERRLQFRLFGRRFSVPI 69

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + L I+    L        + L  +                     M        
Sbjct: 70  GMIGGIELVIL-TALLGAALFYGGRRLFEEANQIANQIPAWIDSFDHWLTSMCRQVEAFC 128

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L     ++   E  L+          ++        +   +  M+    FF     S+ 
Sbjct: 129 RLRDGVLVQAAREMLLQAASALKKMTMSTLVVNSVAAFTFCVEVMVAVAVFFIASVLSLQ 188

Query: 186 QQLDSLGEH---LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           +  +        +F   +   SR +     +      II      +      +   P  +
Sbjct: 189 EMDELRRRRRQSMFSREFALFSRRLVMTGNTWLRTQLIIMFITSCLCILGLVMIRNPYCI 248

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            LG+   I+  +P  G        S+ LL++   +    L     +   +V + L   L+
Sbjct: 249 LLGLGIGILDALPLFGTGAVLVPWSLILLVQKQWYEGIVLAGL-FLVCCLVREFLEARLM 307

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           G  + L  L T   +  G++  G+LG+ +GP+ + +I  + +E 
Sbjct: 308 GDGMGLSPLETLAAIYVGLKLFGILGVLLGPIGLLIIEDLVEEY 351


>gi|28871103|ref|NP_793722.1| membrane protein, PerM family [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213969676|ref|ZP_03397811.1| membrane protein, PerM family [Pseudomonas syringae pv. tomato T1]
 gi|301384802|ref|ZP_07233220.1| membrane protein, PerM family [Pseudomonas syringae pv. tomato
           Max13]
 gi|302131950|ref|ZP_07257940.1| membrane protein, PerM family [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28854353|gb|AAO57417.1| membrane protein, PerM family [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213925484|gb|EEB59044.1| membrane protein, PerM family [Pseudomonas syringae pv. tomato T1]
          Length = 356

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/343 (14%), Positives = 108/343 (31%), Gaps = 16/343 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + + ++  +++F+    +  L G  APVL+ L++ F    +       +           
Sbjct: 15  DEEAVVLAVLLFVAFTLVLTLGGMLAPVLAGLVLAFLMHGLVGLLERLR----------- 63

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
              V  + +V  LF+    +  +  +              P  L+     +        H
Sbjct: 64  MPEVAAVGVVFTLFIGALLVFLLVLVPLLWHQLITLFNEAPGMLAKWQSVLLLLPERYPH 123

Query: 127 LSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           L   + + +  E      G        F+     + ++  + ++ + I +FFF +D   I
Sbjct: 124 LVSDEQVLLAIEVARGEVGKIGQLALTFSISSLPLLVNLMIYLVLVPILVFFFLKDRHVI 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +           A   +++  + + I +   G  I     G V   A+   G+     L
Sbjct: 184 GRWARGYLPR-ERALLNRVADEMKRQIANYIRGKVIEIFICGGVTYIAFVALGLNYAALL 242

Query: 245 GVITAI--MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            ++  I  +    G   ++     I L   G       L +   +   +    L P L  
Sbjct: 243 AMLVGISVVVPYVGAVVVTVPVALIGLFQWGWSDQFIYLMIAHGVIQALDGNVLVPLLFS 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             + L  +     ++      G  G+F    L  L   +    
Sbjct: 303 EAVNLHPVAIICAVLLFGGLWGFWGIFFAIPLATLFKAVLDAW 345


>gi|295397889|ref|ZP_06807951.1| conserved hypothetical protein [Aerococcus viridans ATCC 11563]
 gi|294973869|gb|EFG49634.1| conserved hypothetical protein [Aerococcus viridans ATCC 11563]
          Length = 340

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/316 (12%), Positives = 106/316 (33%), Gaps = 8/316 (2%)

Query: 34  VLSALIIGFTSWPIY---SSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           +L A +    + P+            +  T+  ++  +    +    + F+ +  + +++
Sbjct: 1   MLGAALAFILNLPLKFFEKHMTKLVGKYHTWFRIVGILFGYLIIAGVIAFIIFLVVPDLQ 60

Query: 91  ELVSKVVLANQHGIPVP-----RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           E +   +      I +      +++SD P  +          +  +           +  
Sbjct: 61  ETLGSFISQVPAEINLLYNKINQYISDNPQILETVNQLDVDTNQLRDQLFSIVQSFTSGI 120

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +D     A        +  ++IIF    LF          + +       +  +   +  
Sbjct: 121 LDTTFSLAGNLVNGIFNAFIAIIFGTSILFKKETLTRQFKKIIYGTMPKHWANFTVNLGT 180

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              +       G    A+   +++     +   P  +++ V+T  MA++P    I    V
Sbjct: 181 EANQTFGQYVSGQVTEAVILLVLVFIGMTIFNFPFTLSISVLTGAMALVPIYGAIMGGVV 240

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
             +L+   ++  A    ++  +   +    + P +VGG + LP +   F +       GL
Sbjct: 241 GFFLIAVVDVVQAIWFIIFIIVVQQVEGNIIYPRVVGGSVGLPVIWVLFSVTVSGAIFGL 300

Query: 326 LGLFIGPVLMALIAVI 341
            G+ +   + AL   +
Sbjct: 301 AGMLLSVPIFALCYKL 316


>gi|288933145|ref|YP_003437204.1| hypothetical protein Kvar_0261 [Klebsiella variicola At-22]
 gi|290511947|ref|ZP_06551315.1| inner membrane protein yhhT [Klebsiella sp. 1_1_55]
 gi|288887874|gb|ADC56192.1| protein of unknown function UPF0118 [Klebsiella variicola At-22]
 gi|289775737|gb|EFD83737.1| inner membrane protein yhhT [Klebsiella sp. 1_1_55]
          Length = 349

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/321 (14%), Positives = 113/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + IIL  ++        +L AL       P+ + FI +      F   +   ++
Sbjct: 14  LLKLAALVIILAGIHAAADILVQLLLALFFAIVLNPLVTWFIRR-GVRRPFAITLVVTAM 72

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +    L  L       +  L        +  + +  +L  +                 
Sbjct: 73  LVMLTALLGVLAASLNDFVAMLPDFNRALTRKILQLQEYLPFL----------------- 115

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L I  E  L+    + +  +A+           SI+ +++ + F   +   +  +L  
Sbjct: 116 -NLHINPERMLRRMDSERLMTWATTLMTQLSGAMASIVLLVMTVIFMLFEVRHLPYKLR- 173

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   +I++  GL++       GV   +  GV+  +
Sbjct: 174 FALNNPRLHIAGLHRALKGVTHYLALKT-LISLWTGLIVWLGLLAMGVQFALMWGVLAFL 232

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  G+ IS     +  L+   I+    +     +   ++   + P ++G  + +  
Sbjct: 233 LNYVPNIGSAISAIPPMLQALLFSGIYECLLVGALFLVVHMVLGNMVEPRMMGHRLGMST 292

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           L  F  L+     +G +G+ +
Sbjct: 293 LVVFLSLLVWGWLLGPVGMLL 313


>gi|157145858|ref|YP_001453177.1| putative transport protein [Citrobacter koseri ATCC BAA-895]
 gi|157083063|gb|ABV12741.1| hypothetical protein CKO_01609 [Citrobacter koseri ATCC BAA-895]
          Length = 366

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 118/328 (35%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +        
Sbjct: 29  TLNGLKLVIMLGMLVIILTGIRFSADIIVPFILALFIAVVLSPLVQRMVRLRIPR----- 83

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           V+A   ++ + ++ ++ L  Y    + EL             +P++ S +   +   E W
Sbjct: 84  VLAVSILIGIIVMGMVLLLAYLGTSLNELAR----------TLPQYRSSLVVPLKNIEPW 133

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            + L    S+  L +       +  +    ++          SI  +++ + F   +   
Sbjct: 134 LQRLGIGVSVDELVKYIDPNAAMTLVTNLLAQLSNAMS----SIFLLLLTVVFMLLEVPQ 189

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +L  +     P       +     +    +  T I+I  G+V+     L  V     
Sbjct: 190 LPGKLQQMMAR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGVVVWGMLALLEVRFAFV 247

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+   +++A  +     I   +    L P ++G
Sbjct: 248 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFSGLYDALVVLTGYLIINLVFGNILEPRIMG 307

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 308 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 335


>gi|300785432|ref|YP_003765723.1| hypothetical protein AMED_3535 [Amycolatopsis mediterranei U32]
 gi|299794946|gb|ADJ45321.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
          Length = 375

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/322 (13%), Positives = 99/322 (30%), Gaps = 17/322 (5%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
              V  AL +   + P  S  ++++            V         L       + +  
Sbjct: 70  LVLVGLALFLAIGAEPAVSWLVTRRFPR-WLAVTTVFVVAFGAVGGFLAAAIPVIVEQAT 128

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            LV +     +       +L  +       +      S    L                 
Sbjct: 129 ALVKQAPEYLREAQDHNTFLGRLNERFHLQQAIESAFSSGGGLT---------------- 172

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                 G    +     + +++   +F  D   I   +  L  H        I   +   
Sbjct: 173 SGVLGAGKAVFNVVTDTLVVVVLTIYFVADLPRIRATMYRLIPHSRRPRAILIGDDIFSK 232

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           +    LG   +++  G++      + GVP    L +  A++ +IP    +    +   + 
Sbjct: 233 VGGYVLGNLAVSVIAGVLTLVWLLIFGVPYAALLAIAVAVLDLIPVIGSVIGGVLVSLVA 292

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +  ++        +  +     D  L P ++G  +K+P L T   ++ G   +G++G  +
Sbjct: 293 LTVSLPVCLATVGFFVVYRLAEDYLLVPKIIGNVLKVPALVTVVAVLLGGALLGIIGALV 352

Query: 331 GPVLMALIAVIWKESIMAIKEN 352
              + A I ++ +E +    + 
Sbjct: 353 AIPVAAAILLLVEEVLYPRLDQ 374


>gi|94967586|ref|YP_589634.1| hypothetical protein Acid345_0555 [Candidatus Koribacter versatilis
           Ellin345]
 gi|94549636|gb|ABF39560.1| protein of unknown function UPF0118 [Candidatus Koribacter
           versatilis Ellin345]
          Length = 380

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/345 (14%), Positives = 114/345 (33%), Gaps = 12/345 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R+        +  + +   L   Y  K     +  ++++ F   P+   F  +     +
Sbjct: 34  LRKMQKTQTTCLFILALATGLGLAYVAKMVLVVLFVSILVAFVLAPVVD-FGVRFGVPRS 92

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             ++ A   ++ +        +  G+  M++L        + G    RW           
Sbjct: 93  LASLFAVFLLIGVIYGITFMSYSKGVDFMQDLPKYSRRIREVGQ---RWERR---AEAFR 146

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                 +   +  K       +++  D +       G IF     +I F+    FF    
Sbjct: 147 RSTQDIVPQSEDDKRAVTIRQQSSLSDTVTTALGSVGEIFF----TISFIPFLAFFMLSW 202

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +      L +            ++  +IRS  +G  ++ +   +V    + L GVP 
Sbjct: 203 QEHVRSATVMLFKMENRNTAYVTLGLMSSMIRSFLVGNLLVGLFVSVVSMIIFGLLGVPF 262

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
              +G I+  ++M+P  G  ++     I  +   ++     + +            L P 
Sbjct: 263 FYFVGFISGYLSMVPYLGIVLALIPPVITGMGVMSLEKLVVIIVSILSLHLFAMNVLYPK 322

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           ++G  ++L  L     L+      G +GL +   + A I ++   
Sbjct: 323 VLGKRLQLNPLTVTIALLFWGWLWGAMGLILAIPVTAAIKIVLDH 367


>gi|297571682|ref|YP_003697456.1| hypothetical protein Arch_1124 [Arcanobacterium haemolyticum DSM
           20595]
 gi|296932029|gb|ADH92837.1| protein of unknown function UPF0118 [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 376

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/330 (15%), Positives = 108/330 (32%), Gaps = 9/330 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +++  I++ L  +   F  V  A ++     P  +               +A +S   LF
Sbjct: 41  IVISAIVLILGSVYQVFLGVFLAFVLTAVLLPAVNWLSHFMP--RALATAVAVISGFALF 98

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
              + ++    + E  +L  +      + + +        G +  +   ++         
Sbjct: 99  GGLIAYVVSSILHEWNDLARQFSHGVDNIMRLLT-----DGSLPFTLERSQVFDVLSKAL 153

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                + + +  +     AS    + +   + +   +    F    G S+     +L   
Sbjct: 154 QQGTQYAQNHAGEIAQTVASNASQVAIILTI-LALAVFITVFLLASGASMWAWFIALLPS 212

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                    +            G  IIA+  G +     WL  +P    L V+  +   +
Sbjct: 213 RKQERVNAAAEAGWTAFSGYAAGTVIIAVTNGGLSFIFLWLLDLPLAAPLAVLVMLGTFV 272

Query: 255 P-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P  GAPI+        L    +     + L  A    I    L+P ++G  + +  +   
Sbjct: 273 PLVGAPIAMFVAMFVGLATDGLSMFIIIGLGIAGIGQIEGHLLQPLIMGKKVSVHPVAVA 332

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            G+  G    GL+G  I   L+A+I  +++
Sbjct: 333 VGVSAGGFAGGLMGAVIAIPLIAVIWSVFR 362


>gi|330968867|gb|EGH68933.1| PerM family membrane protein [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 356

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 109/343 (31%), Gaps = 16/343 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + + ++  +++F+    +  L G  APV++ L++ F    + S     +      + ++ 
Sbjct: 15  DEEAVVLAVLLFLAFTLVLTLGGMLAPVIAGLVLAFLMHGLVSVLERLRMPEMAAVGLVF 74

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           T+           F+    +  +  +              P  L+     +        H
Sbjct: 75  TL-----------FIGVLLVFLLVLVPLLWHQLITLFNEAPGMLAKWQSVLLLLPERYPH 123

Query: 127 LSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           L   + + +  E      G        F+     + ++  + ++ + I +FFF +D   I
Sbjct: 124 LVSDEQVLLAIEVARGEVGKIGQLALTFSISSLPLLVNLMIYLVLVPILVFFFLKDRHMI 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +           A   +++  + + I +   G  I     G V   A+   G+     L
Sbjct: 184 GRWARGYLPR-ERALINRVADEMKRQIANYIRGKVIEIFICGGVTYIAFAALGLNYAALL 242

Query: 245 GVITAI--MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            ++  I  +    G   ++     I L   G       L +   I   +    L P L  
Sbjct: 243 AMLVGISVVVPYVGAVVVTVPVALIGLFQWGWGDQFIYLMIAHGIIQALDGNVLVPLLFS 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             + L  +     ++      G  G+F    L  L   +    
Sbjct: 303 EAVNLHPVAIICAVLLFGGLWGFWGIFFAIPLATLFKAVLDAW 345


>gi|320327801|gb|EFW83809.1| PerM family membrane protein [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330877413|gb|EGH11562.1| PerM family membrane protein [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 356

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 109/343 (31%), Gaps = 16/343 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + + ++  +++F+    +  L G  APV++ L++ F    + S     +      + ++ 
Sbjct: 15  DEEAVVLAVLLFLAFTLVLTLGGMLAPVIAGLVLAFLMHGLVSVLERLRMPEMAAVGLVF 74

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           T+           F+    +  +  +              P  L+     +        H
Sbjct: 75  TL-----------FIGVLMLFLLVLVPLLWHQLITLFNEAPGMLAKWQSVLLLLPERYPH 123

Query: 127 LSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           L   + + +  E      G        F+     + ++  + ++ + I +FFF +D   I
Sbjct: 124 LVSDEQVLLAIEVARGEVGKIGQLALTFSISSLPLLVNLMIYLVLVPILVFFFLKDRHMI 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +           A   +++  + + I +   G  I     G V   A+   G+     L
Sbjct: 184 GRWARGYLPR-ERALINRVADEMKRQIANYIRGKVIEIFICGGVTYIAFAALGLNYAALL 242

Query: 245 GVITAI--MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            ++  I  +    G   ++     I L   G       L +   I   +    L P L  
Sbjct: 243 AMLVGISVVVPYVGAVVVTVPVALIGLFQWGWGDQFIYLMIAHGIIQALDGNVLVPLLFS 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             + L  +     ++      G  G+F    L  L   +    
Sbjct: 303 EAVNLHPVAIICAVLLFGGLWGFWGIFFAIPLATLFKAVLDAW 345


>gi|257483914|ref|ZP_05637955.1| PerM family membrane protein [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|320325204|gb|EFW81271.1| PerM family membrane protein [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|330894762|gb|EGH27423.1| PerM family membrane protein [Pseudomonas syringae pv. mori str.
           301020]
 gi|331013155|gb|EGH93211.1| PerM family membrane protein [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 356

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 109/343 (31%), Gaps = 16/343 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + + ++  +++F+    +  L G  APV++ L++ F    + S     +      + ++ 
Sbjct: 15  DEEAVVLAVLLFLAFTLVLTLGGMLAPVIAGLVLAFLMHGLVSVLERLRMPEMAAVGLVF 74

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           T+           F+    +  +  +              P  L+     +        H
Sbjct: 75  TL-----------FIGVLLLFLLVLVPLLWHQLITLFNEAPGMLAKWQSVLLLLPERYPH 123

Query: 127 LSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           L   + + +  E      G        F+     + ++  + ++ + I +FFF +D   I
Sbjct: 124 LVSDEQVLLAIEVARGEVGKIGQLALTFSISSLPLLVNLMIYLVLVPILVFFFLKDRHMI 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +           A   +++  + + I +   G  I     G V   A+   G+     L
Sbjct: 184 GRWARGYLPR-ERALINRVADEMKRQIANYIRGKVIEIFICGGVTYIAFAALGLNYAALL 242

Query: 245 GVITAI--MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            ++  I  +    G   ++     I L   G       L +   I   +    L P L  
Sbjct: 243 AMLVGISVVVPYVGAVVVTVPVALIGLFQWGWGDQFIYLMIAHGIIQALDGNVLVPLLFS 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             + L  +     ++      G  G+F    L  L   +    
Sbjct: 303 EAVNLHPVAIICAVLLFGGLWGFWGIFFAIPLATLFKAVLDAW 345


>gi|123441926|ref|YP_001005909.1| putative transport protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088887|emb|CAL11694.1| putative membrane protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 353

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/315 (15%), Positives = 109/315 (34%), Gaps = 22/315 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +I+  +        P L A+ +     P+    + K +   T   V+    ++ L  +
Sbjct: 20  LVVIMAGIKAASPIVVPFLLAIFLAIVLNPL-VKLLEKIKIPRTLAIVLLVTIIVLLMAL 78

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
               L                  N+    +P++   +   M   + +    +   S+  +
Sbjct: 79  LFSRLGSSL--------------NEFARSLPQYRGMMLEKMRDLQEFAMRFNIEFSVDDI 124

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +    +  ++FI R  S          L ++ ++  LF   R  + +    D+      
Sbjct: 125 MKHVDPSMAMNFITRLLSHLSGAMASTFLLLMTVVFMLFEVERLPYKMQLMFDN------ 178

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
           P     I R     +    +  TII+I  G+V+       GV      G++  ++  IP 
Sbjct: 179 PEQGNAILRRALNGVTHYLVIKTIISIATGIVIWLFLAAMGVRFAFLWGLLAFVLNYIPN 238

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ ++     I  L+     +A  +     +   I    + P ++G  + L  L  F  
Sbjct: 239 IGSVLAAIPPIIQALLFNGFADAFAVTGGYILINLIGGNIIDPRMMGRGLGLSTLVVFLS 298

Query: 316 LVGGVRTMGLLGLFI 330
           L+     +G +G+ +
Sbjct: 299 LIFWGWLLGPIGMLL 313


>gi|56697039|ref|YP_167401.1| hypothetical protein SPO2176 [Ruegeria pomeroyi DSS-3]
 gi|56678776|gb|AAV95442.1| membrane protein, putative [Ruegeria pomeroyi DSS-3]
          Length = 370

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/318 (12%), Positives = 91/318 (28%), Gaps = 23/318 (7%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
           GF  P+  A ++      I     +          +   + V+    + +  +       
Sbjct: 50  GFLIPLALAFLVYVLVTAISDRVHAATGAPEWLTTLAGIIVVLAGLFLMIAVIGGQATQF 109

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
            + + S     +Q    V   L     G   +     +L                 GID 
Sbjct: 110 ARAMASYENAFDQAVTRVAALL-----GEQITAFLRDNL----------------IGIDL 148

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
                S  G         ++  +   F          + L +  +        ++   + 
Sbjct: 149 SALTRSAMGSATSLLNTFLLVSLYVAFLLVERRVLGIKLLLAARDPQLGRDMSQVMEAIS 208

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT--AVS 266
             ++S     T +++    +    + L G+       V+T  +  IP    I        
Sbjct: 209 HNLQSYLGVKTFVSLLTAGISYVVFTLLGLEFAETWAVLTFALNFIPSIGSIVAVIFPAL 268

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           + L+    I     +  +     F++   L P L+G  + +        L       GL+
Sbjct: 269 VSLVQFDTITPFLVIVFFCGTVQFLIGNFLDPALLGRSLNMSTFMVILALTFWTAVWGLI 328

Query: 327 GLFIGPVLMALIAVIWKE 344
           G F+   L   + ++++ 
Sbjct: 329 GAFLSVPLTVCLLIVFRH 346


>gi|312869643|ref|ZP_07729792.1| putative membrane protein [Lactobacillus oris PB013-T2-3]
 gi|311094840|gb|EFQ53135.1| putative membrane protein [Lactobacillus oris PB013-T2-3]
          Length = 347

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/340 (14%), Positives = 114/340 (33%), Gaps = 32/340 (9%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           + R+ ++ +I+ +L+ ++     +L   I+ +    + +     +         +  +  
Sbjct: 14  VRRFAVLAVIIFALWMMRSMMNMILFTFILTYI---VVNWVHLVRRWLPKLSPAVVVIIT 70

Query: 71  MCLFIVPLLFLFYY----GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
             L ++ L F         + ++ ++V+ V+                            +
Sbjct: 71  YALLVLLLYFGITQYLPVLVRQIVKMVNSVLKFYSTNDATA-----------FYHYVNHY 119

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +S    +  L       +G+       +  G++   + LS+I      FF+  +   +  
Sbjct: 120 ISTGTIMTQLR------HGLTIAVSTITSVGVVAFTFLLSLILS----FFYTLELPQMES 169

Query: 187 QLDSLGEHLFPAYWKKIS---RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 +  F  +++ I+   +               IAI   ++     +   +P   A
Sbjct: 170 FSRLFLDSKFDWFFQDIAYFGKKFTNTFGVVLEAQFFIAICNTVITTICLFFMKMPQIFA 229

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L ++  + +++P  G  IS   +SI     G I +   + +   +        L P  + 
Sbjct: 230 LALVVFVFSLVPVAGVIISTIPLSIVAYSVGGIRDVIYIIIMIIVIHAFEAYVLNPKFMS 289

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
               LP   TF  L+ G    G  GL +G  +   +  I 
Sbjct: 290 SQTDLPIFYTFIVLLIGEHFWGTWGLIVGVPIFTFLLDIL 329


>gi|251780428|ref|ZP_04823348.1| permease [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243084743|gb|EES50633.1| permease [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 370

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/333 (15%), Positives = 106/333 (31%), Gaps = 8/333 (2%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
            +P + ALI  +   PI   F  + + S     +     +  + I+   F     +  + 
Sbjct: 43  MSPFIYALIFAYILNPIMMIFEKRFKFSRGKSILATYAIITGIIIMFFFFTIPSLVDSIA 102

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH-LSHPQSLKILSETFLKTNGIDFI 149
            ++ +V    +    +  W++        SEL     L     L  +         +  +
Sbjct: 103 SIIKEVPNYMET---IQEWINTAIKNPKLSELIVDAGLVDKIELLSIKMGNFTITILQGM 159

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDG--FSISQQLDSLGEHLFPAYWKKISRIV 207
             +        +      +  +  L    +DG   S+      + +    +   K     
Sbjct: 160 LGYLLSLTGNLVKIVFGFLIAVYVLSD--KDGLLHSLKTITYIILKEKKASELIKACNTY 217

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
            K+I        I +   GL+      +   P  + L +I AI  MIP   P     V  
Sbjct: 218 NKMIGVYIGTKAIDSAIIGLIALIGLIIVKAPYALLLSIIVAITNMIPYFGPFIGEIVGA 277

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            + I  +   A  +F+   +        L P L+G  + +       G++ G    G +G
Sbjct: 278 GVCIFVSPMKALVVFILLLLIQQFDAWYLDPKLIGAKVGVKPFWIIMGVIIGGAFWGPIG 337

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           + +    +A I + +   +   K     +  + 
Sbjct: 338 MLLASPTLATINIYYIRLVKFYKSKNPSLFKDL 370


>gi|311071117|ref|YP_003976040.1| putative integral inner membrane protein [Bacillus atrophaeus 1942]
 gi|310871634|gb|ADP35109.1| putative integral inner membrane protein [Bacillus atrophaeus 1942]
          Length = 341

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 52/340 (15%), Positives = 112/340 (32%), Gaps = 25/340 (7%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE--SSTFLAVIAT 67
           G+ R+++  ++   LY  K     +L   I  F    + +            +   +I  
Sbjct: 12  GVRRFLVFVVLAGVLYLFKSMINLILLTFIFTFLMNRLENVVRHFLNRFFRVSQRGIITL 71

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + +     + +    +Y +         V    +  I   ++++  P  +   +  +   
Sbjct: 72  LYIALAVGLTVGGFVFYPV---------VAAQIEQLIKQIKYIAYHPNSIPFFDEVSNVF 122

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                   + E F      + +  + +        + L I+  +I   FF  +   +S+ 
Sbjct: 123 GDINISSYVKEAF------NVLYTYLADIST----FGLQIVMALILSMFFLFEKKRLSEF 172

Query: 188 LDSLGEHLFPAYWKKIS---RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           ++         ++ + +       +          IIA+   ++   A W+   P    L
Sbjct: 173 MEKFKTSKLAVFYNEFAFFGGKFARTFGKVLEAQFIIALVNCILTFIALWIMHFPQLFGL 232

Query: 245 GVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            ++   + +IP  G  IS   +SI     G       + L       I    L P L+  
Sbjct: 233 SIMVFFLGLIPVAGVVISLVPLSIIAYSTGGGMYVLYIVLVIMAIHAIETYFLNPKLMSA 292

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             +LP   TF  L+     +G+ GL IG  +   +  I  
Sbjct: 293 KTELPIFFTFTVLIFSEHFLGIWGLIIGIPIFVFLLDILD 332


>gi|239636474|ref|ZP_04677476.1| putative membrane protein [Staphylococcus warneri L37603]
 gi|239597829|gb|EEQ80324.1| putative membrane protein [Staphylococcus warneri L37603]
          Length = 361

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/330 (13%), Positives = 114/330 (34%), Gaps = 13/330 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P L +  + +   P + + + K         +   V ++ +  + + F+    +  + 
Sbjct: 41  FLPFLISGFLFYICLP-FQTLLEKWGFPRWASILTIFVVLIAIIAIVVAFIAPIIISNIN 99

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L+ +     +    +  +   +          T  +++         T + +N I +I 
Sbjct: 100 NLIKQTPALQKETERLINF--SLTQIDKLPSDVTHRINNMVKSMGDGVTDVLSNSISYIT 157

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              S            +I +   L +  +D       +    +     +   + + +   
Sbjct: 158 SLISTI--------FLLIMVPFFLIYMLKDHEKFIPAVAKFFKGERKVFVVDLLKDLNYT 209

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYL 269
           ++S   G   +++  G++L   Y + G+P    L +   +  +IP  G  +SFT  +I  
Sbjct: 210 LKSYIQGQVTVSVILGIILYIGYTIIGLPYTPLLVLFAGVANLIPFLGPWLSFTPAAILG 269

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           +I G       + +   I   +    + P ++G  + +  L     ++      G   + 
Sbjct: 270 IIDG-PSTFIWVCVITLIAQQLEGNVITPNVMGKSLSMHPLTIIVVILAAGDLGGFTLIL 328

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISSN 359
           I   L A++  +        +   +K +SN
Sbjct: 329 IAVPLYAVLKTVISNIFKYRQRIIDKANSN 358


>gi|255517443|ref|ZP_05385119.1| hypothetical protein CdifQCD-_10076 [Clostridium difficile
           QCD-97b34]
          Length = 301

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/297 (10%), Positives = 97/297 (32%), Gaps = 4/297 (1%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
           F  K +        ++ + +  +    +  L       +  L++++ +   +        
Sbjct: 3   FEVKFKAHRLLAIFLSYIFIGFILAFAIRLLIPSIANTLNRLINEMPMYTDYIDSFIE-- 60

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
            ++    +   L         +L   +  F+     +F+  +      +  +  +  I  
Sbjct: 61  KNMSNIDFLKTLIPHIQHSLDNLLKEASNFVGKIPKNFLI-YTLSISSMLFNMTMGFILS 119

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           I  ++   +      + L S           +  R    +     LG  + ++  G++  
Sbjct: 120 IYIIYDKEKIALGFKRFLYSSTARNKADNIIEFFRTTHDIFYDYLLGRILDSLIIGIIAF 179

Query: 231 SAY-WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
             + ++  + + + L  I  +  +IP   P       I + I  +      +  +  I  
Sbjct: 180 LGFQFVIRIENALFLASIIFLGNIIPYFGPFIGAIPPIAMTILYSPQKTIWVIAFLFILQ 239

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            +    + P ++G  + +  +     ++ G    G +G+F+   + A++     + I
Sbjct: 240 QLDGNFIEPKVMGNQVGIGAIWVISAILVGQSLFGFIGVFLSVPIAAVVKTYVDKYI 296


>gi|119509999|ref|ZP_01629140.1| hypothetical protein N9414_20165 [Nodularia spumigena CCY9414]
 gi|119465323|gb|EAW46219.1| hypothetical protein N9414_20165 [Nodularia spumigena CCY9414]
          Length = 383

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 52/349 (14%), Positives = 132/349 (37%), Gaps = 9/349 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++  + +F  +V L+ L+     ++ A++I     P+ ++   K         ++  +S+
Sbjct: 14  LLLIVAVFFFVVLLWQLRSLILTLMIAVVIAAAIAPLVNA-AEKLHLPRWLGVIVVYLSL 72

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +   I   L +      +++ L SK+ +   + +      +   G      +        
Sbjct: 73  IFGLIGAGLIIGPSVSEQIQRLASKLPIYLDNLLIAAENFAFRLGITQIESVEEFFDIQS 132

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +  +             +   +  F   F+   +++I  ++   +      ++ + L S
Sbjct: 133 LTNWLFRS-------SQQLVVRSFGFTRGFIGGVVNLILALVMSGYMVAGSKNLIKGLVS 185

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV-PSHVALGVITA 249
           L    +          + + +     G  +++   G+V+     + G+    +ALGVI  
Sbjct: 186 LFPQPWDERLADQVIPISRRMGGYIQGRVLVSAILGVVITLGLRILGLSEFALALGVIAG 245

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
              +IP   P+     ++ + I  +      + L   +   +    L P LVG  +++  
Sbjct: 246 FTNLIPFVGPVLGAVPALIVAIPQSGLTFLWVLLLFVLIQNLETYVLDPLLVGSSVRVRP 305

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L     ++GG + +G++G  I P  +A + V+ +   +  K   E+ S+
Sbjct: 306 LYQLLAVLGGTQVLGIIGAVIVPPWVAGVGVLVENLYLQPKLLNEEKSA 354


>gi|88856087|ref|ZP_01130748.1| integral membrane protein [marine actinobacterium PHSC20C1]
 gi|88814655|gb|EAR24516.1| integral membrane protein [marine actinobacterium PHSC20C1]
          Length = 388

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/334 (14%), Positives = 107/334 (32%), Gaps = 19/334 (5%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           ++ +++  +  LK    P L A++IG    P+       +     +LAV AT+      I
Sbjct: 45  LIAVLIYLIITLKYIVIPFLVAVLIGALLVPLVQFLERHRW--PKWLAVTATL------I 96

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
                +    ++ + ++   +    Q  I                       S    +  
Sbjct: 97  GFFAVVSGLVVVVVSQVRLGLPSLQQQSIAAFETFRTFLSDSPLQVTDEDIDSLLAQITG 156

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           + +          +       G          +  + A  F   DG  I      L    
Sbjct: 157 VIQR-----DSQALVSGVLSVGSTAGHVLAGTLLTLFATIFVLIDGKRIWAWTVRLFPRR 211

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV-----PSHVALGVITAI 250
             +      +     + +       +A  + + +G   W+ G+     P  + + V   +
Sbjct: 212 ARSAVDGSGQAGWITLTTFVKVQIFVAAVDAVGIGLGAWILGLFYGGFPLVIPIAVAVFL 271

Query: 251 MAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            + IP    +    ++I++ L+      A  +     +   +    L+P ++G  +K+  
Sbjct: 272 GSFIPVVGALITGVLAIFIALVFLGPIPAVIMLGIVLLVQQLEGHILQPLIMGTAVKVHP 331

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L   F +  G    G+ G      L+A++ V+ +
Sbjct: 332 LAVVFAVAAGSFIAGIAGALFAVPLVAVVNVMTR 365


>gi|91975850|ref|YP_568509.1| hypothetical protein RPD_1370 [Rhodopseudomonas palustris BisB5]
 gi|91682306|gb|ABE38608.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           BisB5]
          Length = 367

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 55/330 (16%), Positives = 115/330 (34%), Gaps = 17/330 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +++ +++  LY  K FF P+++A ++G    P  +     +   +        VS + +
Sbjct: 36  ALLIVVVIGLLYVAKPFFLPIVTAFVVGTMLSPAATYMERGRIPRA--------VSAVLI 87

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             + L  + +   L    L+       + G  +   L+           W +  S     
Sbjct: 88  VGLALAGVGFMVALISVPLIDWTSRLPELGAILRDKLN---FFERPMAFWRQLQSAMGGS 144

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           ++ S            P     F    L   L  +  ++     ++D       + + G 
Sbjct: 145 ELPSTPIQMPQIEWMQPTV--EFLSPTLTEFLLFLVTLVLFIATWKDLRR--ALVMNFGG 200

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   +I   + + +    L +T+I +  G   G    LAG+P+   LG + A +  
Sbjct: 201 RDARLRMLRILNEIEQSLGGYLLTVTVINLCYGAATGVICALAGMPNPAGLGALAATLNF 260

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLF--LWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           IP   P+    +   + I         L   +   +  F+    + P ++G  ++L  L 
Sbjct: 261 IPVIGPVVMFVILTLVGIISMPTMGEGLLAPIGFVLLTFVEGHFITPTIIGRRLELNALA 320

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            F  L       G +G F+   L+ +  V+
Sbjct: 321 VFIALAFWTWLWGPMGGFLASPLLIVGLVL 350


>gi|322370455|ref|ZP_08045013.1| permease [Haladaptatus paucihalophilus DX253]
 gi|320549872|gb|EFW91528.1| permease [Haladaptatus paucihalophilus DX253]
          Length = 381

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 57/342 (16%), Positives = 112/342 (32%), Gaps = 33/342 (9%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
                +ILV +  L  +   ++  + + + + PI    +          A +     + +
Sbjct: 18  LFAAALILVLVTSLGSYLGWLVFGVFLYYVARPIARRLVG-FGLPPGIAASVT----LAV 72

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            ++P + L     +     +S V +A+         +  +   ++    +    + P+ L
Sbjct: 73  IVLPFIALLGTVAVIAFGQLSTVRVAD---------VERLVRVLFPGFDFRAIPTTPERL 123

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                  L+   I             F     ++   +I +FF  RD   I+        
Sbjct: 124 YDSVTRLLRNPSIRSFLFQFRGLIGAFATQSYNLFLTLIFVFFLVRDEGKIAGWFRRTVA 183

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--------VPSHVALG 245
                   +    V + + S F G T+      ++    Y L          +P  + + 
Sbjct: 184 D-EETRTGEYLHAVDRGLNSVFFGYTLTIFVIIVLSAVIYTLLNLVAPPGMAIPQTMLVA 242

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCL---FLWGAIELFIVDK----TLR 297
           + T +  ++P  G  I +  V  YL I     +   L    L+ AI     D      +R
Sbjct: 243 IATGLATIVPLVGRSIVYFVVVFYLAIVALRTDPVLLWFPVLFLAIMEIAFDNAVRTYIR 302

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
           P L G     P     F  + G    G  G+F+GP +M +  
Sbjct: 303 PILSGRL--FPTGLIMFAYLLGPPVFGWYGIFLGPFIMVVTV 342


>gi|229121503|ref|ZP_04250730.1| hypothetical protein bcere0016_18070 [Bacillus cereus 95/8201]
 gi|228661967|gb|EEL17580.1| hypothetical protein bcere0016_18070 [Bacillus cereus 95/8201]
          Length = 339

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 127/352 (36%), Gaps = 25/352 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +G  R++++ I+ + LY LK     +L   I+ F           K + +   +    
Sbjct: 9   RSRGFQRFLVLIILALVLYGLKSMINLILITFILTFLMDRFQRFISKKLKVNRKIVIACL 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++      L        +++ +L+ +  L  Q+           P      +     
Sbjct: 69  YIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQN-----------PPDNEIIKYALST 117

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           ++  +  K + +      G+D I +  +  G + L   LS+I  +  L     +   I  
Sbjct: 118 INGMEVSKYIEQ------GVDVIYQSIANIGKVSLQILLSLILSLFFL----LEKERIIT 167

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 E     ++++I+    +  RS         +IA+   ++   A  + G P  + 
Sbjct: 168 FTSKFKESKLKIFYEEIAYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLLV 227

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L V+  ++ +IP  G  IS   + I     G +     + ++  +   +    L P  + 
Sbjct: 228 LAVMIFLLGLIPVAGVIISLFPLCIIAYNVGGVIYVVYILVFITVIHALESYFLNPKFMS 287

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
               LP   TF  L+     +G+ GL IG  +   +  +   +     +N++
Sbjct: 288 AKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLDVNNEESIKNRK 339


>gi|154684950|ref|YP_001420111.1| YdbI [Bacillus amyloliquefaciens FZB42]
 gi|154350801|gb|ABS72880.1| YdbI [Bacillus amyloliquefaciens FZB42]
          Length = 349

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 69/201 (34%), Gaps = 4/201 (1%)

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS---RIVPKVIRSTFLGMT 219
           + L ++  +I   FF  +   +++ +          ++ +++       +          
Sbjct: 148 FGLQVVMSLILSMFFLFEKKRLTEFMKKFQHSKLSVFYYELAYFGSKFARTFGKVLEAQF 207

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNA 278
           IIA+   ++   A  +   P    L ++   + +IP  G  IS   +SI     G     
Sbjct: 208 IIALVNCILTLIALAILHFPQLFGLSIMVFFLGLIPVAGVVISLIPLSIIAYTTGGAAYV 267

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             + L   +   I    L P L+    +LP   TF  L+      G+ GL IG  +   +
Sbjct: 268 IYIVLVIFVIHAIETYFLNPKLMSAKTELPIFFTFTVLIFSEHFFGIWGLIIGIPIFVFL 327

Query: 339 AVIWKESIMAIKENKEKISSN 359
             I        KE    +   
Sbjct: 328 LDILDVVNNEEKEKNGPVPDK 348


>gi|146338157|ref|YP_001203205.1| putative permease [Bradyrhizobium sp. ORS278]
 gi|146190963|emb|CAL74968.1| putative permease [Bradyrhizobium sp. ORS278]
          Length = 372

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 54/331 (16%), Positives = 118/331 (35%), Gaps = 18/331 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            + +  +   LY  +GFF P++ A ++G    P  +     +               + +
Sbjct: 42  ILTVICVTSVLYVARGFFLPIVMAFVVGTMLSPAANLLERYRVPRGIGA--------VLI 93

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            I     L +   L    ++       +    +    + +        LW +  +     
Sbjct: 94  VIAVAAGLAFIIGLISAPVLDWTNRLPELAAQLK---AKLHVFDKPLALWHEMQTAIGGG 150

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF-YRDGFSISQQLDSLG 192
              +   L+   +D++          F ++   + F  + LF   +RD       + + G
Sbjct: 151 SAQASNTLELPKLDWVQPTIEFLTPTFTEF--MLFFATLVLFIASWRDLRR--TLIMTFG 206

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           +H       +I   +   + +  + +T+I  G G+  G A  + G+P+   LG + A + 
Sbjct: 207 DHEARLRTLRILNELELHLGNYLMTVTLINTGVGVATGLACAVTGMPNPAGLGALAATLN 266

Query: 253 MIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            +P   PI+     V + L+    +       L  A+  F+    + P ++G  + L  L
Sbjct: 267 FVPIIGPIAMFMVLVLVGLIAFPTLSGGMAAPLIFAVITFMEGHFVTPTIIGRRLALNAL 326

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             F  L       G +G F+   L+ +  ++
Sbjct: 327 AVFIALAFWTWLWGPMGAFLASPLLIVGLIV 357


>gi|332175898|gb|AEE25152.1| protein of unknown function UPF0118 [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 373

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 96/312 (30%), Gaps = 19/312 (6%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           W++   +L +LYF +    PV+   +I     P+ +               ++   ++  
Sbjct: 18  WLLFLGVLYTLYFTQSLLMPVVVTSLIALLLSPLVAGLQRLHIPR-----TVSAFLLVAT 72

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            I P  FL        ++    V    QH       +SD   G   +             
Sbjct: 73  LIAPFTFLGAELAEPAQKWAKLVPELTQHITEQLDSISDAMDGKENAPAQNDDDDGFSFF 132

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM-----------IIALFFFYRDGF 182
            I SE   +          + R     L+  LS++             +I   F    G 
Sbjct: 133 GIFSEKAEQAPVKSDDNAMSQRLKQGGLEIMLSVLSSTPLILAQLMTGVILTLFLLIFGP 192

Query: 183 SISQQLDSLGEHLFPAYWKK-ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            + +        +      + +   + K +    + ++II  G GL      +  G+   
Sbjct: 193 KLFEAFIRYFPKITDKDQARCLVATIQKELSRYIVTVSIINAGLGLSTALVLYFIGIEDA 252

Query: 242 VALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           +  GV+  ++  IP    +          L+  G    A        +   I  + + P 
Sbjct: 253 LLWGVLAGLLNFIPYVGSLIGATILTLAGLVQFGMQVTALIPPGVYFVLNLIESQFITPT 312

Query: 300 LVGGPIKLPFLP 311
           ++G  ++L  L 
Sbjct: 313 VLGRNMQLNPLI 324


>gi|308172315|ref|YP_003919020.1| integral inner membrane protein [Bacillus amyloliquefaciens DSM 7]
 gi|307605179|emb|CBI41550.1| putative integral inner membrane protein [Bacillus
           amyloliquefaciens DSM 7]
          Length = 349

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 68/197 (34%), Gaps = 4/197 (2%)

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS---RIVPKVIRSTFLGMT 219
           + L ++  +I   FF  +   +++ +          ++ +++       +          
Sbjct: 148 FGLQVVMSLILSMFFLFEKKRLTEFMKKFQHSKLSVFYYELAYFGSKFARTFGKVLEAQF 207

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNA 278
           IIA+   ++   A  +   P    L ++   + +IP  G  IS   +SI     G     
Sbjct: 208 IIALVNCILTLIALAILHFPQLFGLSIMVFFLGLIPVAGVVISLIPLSIIAYTTGGAAYV 267

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             + L   +   I    L P L+    +LP   TF  L+      G+ GL IG  +   +
Sbjct: 268 IYIVLVIFVIHAIETYFLNPKLMSAKTELPIFFTFTVLIFSEHFFGIWGLIIGIPIFVFL 327

Query: 339 AVIWKESIMAIKENKEK 355
             I         E  E 
Sbjct: 328 LDILDVVNNEEMEKSEP 344


>gi|303247512|ref|ZP_07333784.1| protein of unknown function UPF0118 [Desulfovibrio fructosovorans
           JJ]
 gi|302491208|gb|EFL51100.1| protein of unknown function UPF0118 [Desulfovibrio fructosovorans
           JJ]
          Length = 373

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 56/335 (16%), Positives = 106/335 (31%), Gaps = 17/335 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           + +   + +  W   F  LV L    G F  V    I+ F       +   K +   T  
Sbjct: 7   QFLRTNKTLAIWA-AFFGLVWLANFYGLFGLVFITYILCFLFNGPIHALAVKTKLPRTLW 65

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A +  +  + + +  +  +      E    + K+          P  L  + G +     
Sbjct: 66  ATLVYIVFVSVALTLVSSVLPKLGSESTSFLKKL----------PDTLETLRGHLDNWAW 115

Query: 123 WTKHLSHPQSLKIL--SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
               ++ P +      S   L       +   A         Y  + +   +  F    D
Sbjct: 116 LAPDMAAPIAKIKDYLSIEALVGVKAQTLFTIAVNSFNQISTYVSTFLLGTLFSFLIMLD 175

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPK---VIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             ++  +  SL E      +   +R V +   V+   F    +IA    ++      + G
Sbjct: 176 FPNLRAKTISLRESRLRDIYDVTARSVVRFAVVVGMGFRAQMLIAAVNTILTAIGMHILG 235

Query: 238 VPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           +   + L  +     +IP  G  IS   + +  +      +A    +   I   I    L
Sbjct: 236 IEPVMLLSTVVFFCGLIPVLGTFISSAPIVLVAVNTTGPHHALWAIVMIIIVHTIETYIL 295

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
            P +V    K+  L T   L  G +  GL G+ +G
Sbjct: 296 NPRIVAAMFKISPLVTLMILYVGHKLFGLWGMVLG 330


>gi|330879900|gb|EGH14049.1| membrane protein, PerM family [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330964846|gb|EGH65106.1| membrane protein, PerM family [Pseudomonas syringae pv. actinidiae
           str. M302091]
 gi|331017405|gb|EGH97461.1| membrane protein, PerM family [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 356

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/343 (14%), Positives = 108/343 (31%), Gaps = 16/343 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + + ++  +++F+    +  L G  APVL+ L++ F    +       +           
Sbjct: 15  DEEAVVLAVLLFVAFTLVLTLGGMLAPVLAGLVLAFLMHGLVGLLERLR----------- 63

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
              V  + +V  LF+    +  +  +              P  L+     +        H
Sbjct: 64  MPEVAAVGVVFTLFIGALLVFLLVLVPLLWHQLITLFNEAPGMLAKWQSVLLLLPERYPH 123

Query: 127 LSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           L   + + +  E      G        F+     + ++  + ++ + I +FFF +D   I
Sbjct: 124 LVSDEQVLLAIEVARGEVGKIGQLALTFSISSLPLLVNLMIYLVLVPILVFFFLKDRHLI 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +           A   +++  + + I +   G  I     G V   A+   G+     L
Sbjct: 184 GRWARGYLPR-ERALLNRVADEMKRQIANYIRGKVIEIFICGGVTYIAFVALGLNYAALL 242

Query: 245 GVITAI--MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            ++  I  +    G   ++     I L   G       L +   +   +    L P L  
Sbjct: 243 AMLVGISVVVPYVGAVVVTVPVALIGLFQWGWSDQFIYLMIAHGVIQALDGNVLVPLLFS 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             + L  +     ++      G  G+F    L  L   +    
Sbjct: 303 EAVNLHPVAIICAVLLFGGLWGFWGIFFAIPLATLFKAVLDAW 345


>gi|328552126|gb|AEB22618.1| integral inner membrane protein [Bacillus amyloliquefaciens TA208]
 gi|328910399|gb|AEB61995.1| putative integral inner membrane protein [Bacillus
           amyloliquefaciens LL3]
          Length = 349

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 68/197 (34%), Gaps = 4/197 (2%)

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS---RIVPKVIRSTFLGMT 219
           + L ++  +I   FF  +   +++ +          ++ +++       +          
Sbjct: 148 FGLQVVMSLILSMFFLFEKKRLTEFMKKFQHSKLSVFYYELAYFGSKFARTFGKVLEAQF 207

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNA 278
           IIA+   ++   A  +   P    L ++   + +IP  G  IS   +SI     G     
Sbjct: 208 IIALVNCILTLIALAILHFPQLFGLSIMVFFLGLIPVAGVVISLIPLSIIAYTTGGAAYV 267

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             + L   +   I    L P L+    +LP   TF  L+      G+ GL IG  +   +
Sbjct: 268 IYIVLVIFVIHAIETYFLNPKLMSAKTELPIFFTFTVLIFSEHFFGIWGLIIGIPIFVFL 327

Query: 339 AVIWKESIMAIKENKEK 355
             I         E  E 
Sbjct: 328 LDILDVVNNEEVEKSEP 344


>gi|283853406|ref|ZP_06370652.1| protein of unknown function UPF0118 [Desulfovibrio sp. FW1012B]
 gi|283571219|gb|EFC19233.1| protein of unknown function UPF0118 [Desulfovibrio sp. FW1012B]
          Length = 370

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 52/339 (15%), Positives = 109/339 (32%), Gaps = 12/339 (3%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +L     +     F  LV L    G F  V    I+ F          ++ +   T  AV
Sbjct: 8   ILRTNKTLAIWAAFFGLVWLASYYGLFGLVFITYILCFLFNGPIERLAARTKLPRTLWAV 67

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  +  + + +     +      E    + K+    +         + +   M A     
Sbjct: 68  VVYLIFVAMVLTIASSVLPKLGSESTAFLKKLPDTLETLRQRLDAWAWLAPDMAAPISKI 127

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           K     ++L  +    L    ++   +  +      L    S + M+        D  ++
Sbjct: 128 KDYLALEALVGVKAETLFVIAVNSFNQITTYISTFLLGTLFSFLIML--------DFPNL 179

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPK---VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +  +L +      +   +R V +   V+   F    +IA    ++      + G+   
Sbjct: 180 RARTIALRDSRLRDIYDVTARSVIRFAVVVGMGFRAQMMIAALNTILTAIGLVILGIQPV 239

Query: 242 VALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           + L  +     +IP  G  IS   + +  +   +  +A    +   +   I    L P +
Sbjct: 240 MLLSTVVFFCGLIPVLGTFISSAPIVLVAVNTVSPGHAVWAIVMIILVHTIETYVLNPRI 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
           V    K+  L T   L  G +  GL G+ +G  +   + 
Sbjct: 300 VAAMFKISPLLTLVILYVGHKLFGLWGMVLGVPVSVFLL 338


>gi|312128438|ref|YP_003993312.1| sporulation integral membrane protein ytvi [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778457|gb|ADQ07943.1| sporulation integral membrane protein YtvI [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 373

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 66/360 (18%), Positives = 117/360 (32%), Gaps = 24/360 (6%)

Query: 1   MRETMLNPQGIMRWMIMFI---ILVSLYFLKGF----------FAPVLSALIIGFTSWPI 47
           MRE   N   +    ++ I   I    Y +K F          F PV+  L I   S P+
Sbjct: 1   MREFTKNRFVVAMIYVILISAFIFSCAYLIKTFDLFVRFVIKAFIPVIIGLFIAEVSEPL 60

Query: 48  YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
                 +K  S T  A++  + +  +    L    Y  + E   LV+ +   +   I   
Sbjct: 61  LKYLEKRKV-SRTISAILILIVLNIILGFMLAEGIYILVNECMSLVTSLQNIDYDKIY-- 117

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI---FLDYC 164
                +     + +     L  P    I S     TN ++ I   + +   +    L   
Sbjct: 118 ---QALDKLFASVKNIYSGLPGPIVNFIQSGVDELTNVLNQIATMSLKVIKVIPATLKGI 174

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
               F +++ FFF RD   +   L              +   V   +        I+AI 
Sbjct: 175 TVWFFSVLSAFFFMRDRHKMRAWLIQNFSVQLYRELSSVIFKVIDSVVDYAKSQIILAIL 234

Query: 225 EGLVLGSAYWLAGVPS-HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
             L       +   P   V   ++  +  +   G+ I      +   I G+      L +
Sbjct: 235 MFLTGIIGLSIIKAPYFLVISLLLGLLSIIPIVGSGIILLPWIVGSFIAGDTKFGIKLLI 294

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              I L I +      +V   + +    T   +  GV   G  G  IGP+L+  +  +++
Sbjct: 295 VYLIILGIRE-FASIKIVASQVGISTFTTLVSIYAGVEVFGAWGFVIGPLLVVFLKAVYE 353


>gi|223936540|ref|ZP_03628451.1| protein of unknown function UPF0118 [bacterium Ellin514]
 gi|223894704|gb|EEF61154.1| protein of unknown function UPF0118 [bacterium Ellin514]
          Length = 632

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 63/184 (34%), Gaps = 4/184 (2%)

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                +     L   ++   ++  + F   +   +  +L  +          ++     +
Sbjct: 146 VEVIQKIMGSLLGIAINAFVVVFFVIFMLMEREDMRDRLIRMIGTGKLNTTTQLLDDAGQ 205

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSI 267
            +        ++    G++ G   +  G+P+ +  G++  I   IP  G         ++
Sbjct: 206 RVSRYLRVQLMVNATYGILAGIGLYFIGIPNALLWGLLAGIFRYIPYAGIWVAVTMPFAL 265

Query: 268 YLLIKGNIFNATC-LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
            L +          + L+GA+EL +    L P+L G    +  L   F  V      G +
Sbjct: 266 GLAVDPGWTKPLLTIGLFGALELTVA-NLLEPWLYGTSTGITPLAVLFAAVFWTWLWGPV 324

Query: 327 GLFI 330
           GL +
Sbjct: 325 GLLL 328


>gi|183232629|ref|XP_653434.2| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|169801952|gb|EAL48046.2| hypothetical protein EHI_006110 [Entamoeba histolytica HM-1:IMSS]
          Length = 361

 Score = 65.6 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/324 (15%), Positives = 107/324 (33%), Gaps = 15/324 (4%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV-------- 97
           P+    I       T  + +    ++ L  +    +    ++E  +L++ +         
Sbjct: 43  PLLVITIFLFVNRRTLASFMIITILLSLVSLLSTVVIKQSIIEFHQLINTITKLVTNLSE 102

Query: 98  -LANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
              N     V    S      +  +L   +    +++K      LK       P F    
Sbjct: 103 DSVNLLISRVEESYSGQIILEYMDKLGLMNYLSLKTIKPAVLQGLKLLSSQVQPYFLINL 162

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
                D   +    I +L +F     +I   +  L            + +    +R   +
Sbjct: 163 ASSVTDNIFAFFIFIYSLLYFLIYQNTILNGISQLIPFDVEVVQIIRNGVASTSLRLILM 222

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNI 275
              +  I +  +    + LA +P  +   +I A++A++P  +  I +    + L  +GN 
Sbjct: 223 NSLLF-IFKFTLTFVTFSLAHLPYKMVCSIICALLAILPAFSNMIVWLPAGLVLFFQGNT 281

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
                     A+  FI+D     +       +        +V GV   G+ G  +GP++ 
Sbjct: 282 TGMIWFISVHAVTYFIIDG----WFYSFIPDIIPYFVGLSVVFGVYVFGITGCILGPLVF 337

Query: 336 ALIAVIWKESIMAIKENKEKISSN 359
            +   +    I+  +  K+KI  +
Sbjct: 338 VMTMTLKDIFILQNQRLKQKIKQD 361


>gi|326571447|gb|EGE21462.1| hypothetical protein E9S_02469 [Moraxella catarrhalis BC7]
          Length = 369

 Score = 65.2 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 55/338 (16%), Positives = 119/338 (35%), Gaps = 9/338 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV-IAT 67
           + +     + + L +L+ +K    P ++A I+ +   P+ S              V I+ 
Sbjct: 11  RRLFILAALCLFLYALFLMKTVITPFVAAFILAYFLNPLVSRLALIMPRILAVSVVYISC 70

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             VM   I+ L+ + +  M  + E +  ++           W++                
Sbjct: 71  FVVMGALIIWLVPMVWAQMQILWESLPHIITWYNDTGR--AWIARYTDSELLP---LDID 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +     +   + N +  + +     G+   +    I+ + I  F+F          
Sbjct: 126 LISNTALDYFQNNYQVNDVQGLIKQVFSSGISAANNIGLIVMVPILTFYFLLGWDQRLYA 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                   +     +I+R     + +   G  ++ +  G +      L G+   + +G+ 
Sbjct: 186 WKLSIPKPYTNKVVRIARDCDTALMNFAKGQFLVMLLLGAIYAIQLQLIGLQLGLIIGIT 245

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--DKTLRPFLVGGP 304
             I + +P  G  I   A  I  L +  +       ++GA  +  V     L+P L+G  
Sbjct: 246 AGIASFVPYLGFGIGIIAALIAGLFQFGLDWIYLGLIFGAFMIGQVVEGYILQPLLLGDK 305

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           I L  L   F ++ G    G +G+ I   + A+I V++
Sbjct: 306 IGLSPLWVIFSVLAGASLFGFVGMLIALPVSAVINVLF 343


>gi|165920273|ref|ZP_02219545.1| putative membrane protein [Coxiella burnetii RSA 334]
 gi|165916829|gb|EDR35433.1| putative membrane protein [Coxiella burnetii RSA 334]
          Length = 363

 Score = 65.2 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 60/342 (17%), Positives = 121/342 (35%), Gaps = 34/342 (9%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F   +  PV+ ++++ +            +     + AV             +++LF+ G
Sbjct: 41  FFGKYLLPVVISVVLAYLFASPVRWLERWRFPH--WAAVT------------IVYLFFLG 86

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +  +       ++  Q    +   + + P  +   + W     H       ++     N 
Sbjct: 87  IFLLALFGLLPLMWKQ----LASMVHEFPKAITKGQEWMTEYMHRYPKLFPTDPI--ANL 140

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMII-----------ALFFFYRDGFSISQQLDSLGEH 194
             ++ + ++R G   L + L+ I  II            +FFF +DG SIS  L      
Sbjct: 141 AGYLHQQSARIGQFILSFSLASIPGIIEAILYLVLVPLLVFFFLKDGGSISNWLSRFLPE 200

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 + +   + + I +   G  I  I   +V   A+ L G+     LGV+  +  ++
Sbjct: 201 RQGL-IRIVWHEMNQKIGAYVRGRVIEIIIVSIVAVIAFALLGLQYAFLLGVLLGLSVIV 259

Query: 255 P-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P  GA +    ++I  L++ G   +   L +  AI + +    L P L    + L  +  
Sbjct: 260 PYIGAIVVTIPIAIVGLMQWGLSAHFAYLMIVYAIIITLDGNLLVPLLFSEAMDLHPIVI 319

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
              ++      G  G+F    L  L+  +      A     E
Sbjct: 320 ILSVLVFGGIWGFWGIFFAIPLATLVKTVLNAWPKARISQNE 361


>gi|319652964|ref|ZP_08007069.1| membrane protein [Bacillus sp. 2_A_57_CT2]
 gi|317395313|gb|EFV76046.1| membrane protein [Bacillus sp. 2_A_57_CT2]
          Length = 337

 Score = 65.2 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 53/342 (15%), Positives = 115/342 (33%), Gaps = 25/342 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           LN   I R++I  II+++LY L+     +L   I  F    +    +S+ + +     + 
Sbjct: 8   LNNNSIKRFIIFGIIVLALYLLRSMINLILITFIFSFLMDRLVKLVLSRFKLNRKLTVIT 67

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVL--ANQHGIPVPRWLSDIPGGMWASELW 123
             + ++ L  + ++      + E+ +L  +V      +H   V  ++  +      ++  
Sbjct: 68  LYMGIIGLLSIGIIKYLPLIVSEISQLFKQVESFYTQKHDNIVITYIVQMLETNEITKYL 127

Query: 124 TKHLSHP-QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            +  +   Q    +S   ++      +  F        +++ L      IA F+      
Sbjct: 128 EQGFAFLLQYFSDISHIAVQVLLSLILSLFFLLEKPKLIEFTLKFKHSKIADFY------ 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                             +       +          +IA    ++   A W+   P  +
Sbjct: 182 ---------------NEIEYFGSKFVQTFGKVIEAQFVIATVNCILTTLALWIMDFPQLM 226

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L ++  ++ +IP  G  IS   +       G       + L   +   I    L P L+
Sbjct: 227 GLSILIFLLGLIPVAGVIISLVPLCTIAYSLGGFIQVFYIVLVIMVIHAIEAYILNPKLM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                LP   TF  L+      G+ GL +G  +   +  + +
Sbjct: 287 SSKTDLPVFYTFIVLIFSEHFFGVWGLIVGIPVFVFMLDVLE 328


>gi|76802921|ref|YP_331016.1| permease [Natronomonas pharaonis DSM 2160]
 gi|76558786|emb|CAI50379.1| predicted transporter (predicted permease) [Natronomonas pharaonis
           DSM 2160]
          Length = 369

 Score = 65.2 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/327 (15%), Positives = 102/327 (31%), Gaps = 29/327 (8%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F A +  A+ + +++   Y+     +            V  + +  VPL+ L  Y ++ +
Sbjct: 26  FIAALTVAVFLYYSTRRFYALLGRLRLPKRIRA-----VLALSVLGVPLMLLISYTVILL 80

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
                + V         P  ++      W   L          +    +       IDF 
Sbjct: 81  AVEARQFVEEYPVFESAPDDVA------WFEGLEDLPEPTINGIIQAYQAGDLDIFIDFA 134

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH-LFPAYWKKISRIVP 208
              A+    +     L+++ +++  ++   DG      L    E  +   Y + +   + 
Sbjct: 135 VEHAAFLSSLITGLLLNLLIVVVVTYYLLIDGTKARDWLLRFDEDAIVREYLEAVDDELE 194

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLA-----GVPSHVALGVITAIMAMIPGGAPISFT 263
            V+    L + +I++   + +   Y  A      VP     G +T + ++IP        
Sbjct: 195 AVLFGNLLNVIVISLI-AVAVFMGYNAAVPAPVEVPYPALAGALTGVASLIPVVGMKIVY 253

Query: 264 AVSIYLLIKGNIFNA---------TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
                      + +            L L   +   I D  LRP+      +        
Sbjct: 254 LPLAVAAAVPVVLDGPTELLVYIVGFLALAVIVVDTIPDLVLRPYF--SGNRTHVGLLML 311

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVI 341
             + G    G  GLF  P+L+ L    
Sbjct: 312 AYIFGPVVFGFYGLFFAPILLVLGLTF 338


>gi|156936358|ref|YP_001440274.1| hypothetical protein ESA_04258 [Cronobacter sakazakii ATCC BAA-894]
 gi|156534612|gb|ABU79438.1| hypothetical protein ESA_04258 [Cronobacter sakazakii ATCC BAA-894]
          Length = 337

 Score = 65.2 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/321 (14%), Positives = 117/321 (36%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           + +   + IIL  ++       P+L AL +     P+ + F+ +          +A   V
Sbjct: 2   LQKLAALVIILAGIHAAADMIVPLLLALFLAIVLNPLVTWFMRRGFRRP-----VAITIV 56

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E V+ +   N+               +    L  + +   
Sbjct: 57  VFVMLIGLTLLLGVLAASFNEFVALMPKYNKE--------------LTRKLLHLQEMVPF 102

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
             L +  E  L+    D +  FA+           S++ +++ + F   +   +  +L  
Sbjct: 103 MHLHLSPERMLQRMDSDKMMTFATTLMTQLSGAMASVVLLVMTVVFMLFEVRHVPYKL-R 161

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                   +   + R +  V     L   +I++  G+++     L  +   +  GV+  +
Sbjct: 162 FALSNPQLHIAGLHRALKGVSHYLALKT-LISLWTGVIIWLGLTLLDIQFALMWGVLGFL 220

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  IP  GA +S     I  L+   ++    + +  ++   I+   + P ++G  + +  
Sbjct: 221 LNYIPNIGAVLSAIPPMIQALLFNGVYEVVMVGVLFSLVHMILGNIVEPRMMGHRLGMST 280

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 281 MVVFLSLLFWGWLLGPVGMLL 301


>gi|307297810|ref|ZP_07577616.1| protein of unknown function UPF0118 [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306917070|gb|EFN47452.1| protein of unknown function UPF0118 [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 363

 Score = 65.2 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 79/242 (32%), Gaps = 1/242 (0%)

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
           L  +  G    +   K         +           D               +   ++ 
Sbjct: 89  LDSLFNGGTFDKWLEKLPPFISEAIVDIVESASQWLSDAAIMIGQYVASNITSWITGVVL 148

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
           +IIA F   R    I + +  L               + K  ++   G  IIA+  G ++
Sbjct: 149 LIIAGFVVARKTNMIQKSVPVLFPGCDQDKVSSFFHSLYKDFQTYIGGQLIIALVVGTII 208

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIE 288
                + G+P+ + LG++  I   +P    +     + +   +   ++      +   I 
Sbjct: 209 AIGSAILGIPNAIFLGLLAGITNFVPYLGVVVTSIPMIVLSFVSKGLWGVVGAIVLLVIA 268

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             +    L P ++   +K+ +      ++G    +G+ G+     ++  I   W + I++
Sbjct: 269 NQMEIWFLSPKILSNRVKINWFIVLVSIIGFGELLGVFGVVFAVPILIFIKRYWMDFILS 328

Query: 349 IK 350
            +
Sbjct: 329 ER 330


>gi|320160814|ref|YP_004174038.1| hypothetical protein ANT_14100 [Anaerolinea thermophila UNI-1]
 gi|319994667|dbj|BAJ63438.1| hypothetical membrane protein [Anaerolinea thermophila UNI-1]
          Length = 432

 Score = 65.2 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/270 (12%), Positives = 94/270 (34%), Gaps = 10/270 (3%)

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK--TNGIDFIPR 151
           S +    Q    +P  L+           +   L +   +  L+++ L      +     
Sbjct: 117 SLIRFLQQTLKDLPSLLTQWSEMPVQVGPFQFVLPNFMDVNTLTQSLLGIVQPLLSRAGL 176

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                     ++   + F+++  +F   +    S ++  +    +    +K    +  + 
Sbjct: 177 LVGSIASGAFNFLGWVFFILLISYFILAESGGTSPEIIRINLPGYNEDLRKFGVYLSGIW 236

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLL 270
            +   G  II +   LV  +   + G+   + L ++  +   IP  G  +++T+  +  L
Sbjct: 237 NAFLRGQIIIILITILVYTALLGILGLRFFIGLALLAGLARFIPYVGPAVAWTSYGLVAL 296

Query: 271 IKGN-------IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
            +G+             +         I+D  +   L+G  +K+         + G    
Sbjct: 297 FQGSNYFGLPPWGYVILVVGLAWFTDVILDNLVATRLMGTALKIHPAAVMVSALIGANLF 356

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G++G+ +   ++A + ++    +  + + +
Sbjct: 357 GIIGVVLAAPVVATLKLLTSYVVYRLSDQE 386


>gi|197106958|ref|YP_002132335.1| conserved predicted permease protein [Phenylobacterium zucineum
           HLK1]
 gi|196480378|gb|ACG79906.1| conserved predicted permease protein [Phenylobacterium zucineum
           HLK1]
          Length = 360

 Score = 65.2 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/322 (13%), Positives = 89/322 (27%), Gaps = 24/322 (7%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           L++L     P+  A+ +             +    S   A   T   + L +       +
Sbjct: 2   LHWLSNILTPLALAMFLAVMIDGFARVLQHRLPGVSRRAA---TPLAVVLSVAIFGGAAF 58

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
           +         +++V        +    + +  GM      T+ L                
Sbjct: 59  FVADNAASFGAQLVTYTPKLNGLIARFAGM-VGMDVPPTVTELLRQLDP----------- 106

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE-HLFPAYWKK 202
                  R+  +      D+  +  F+++ L F         ++  SL            
Sbjct: 107 ------ARYLGQIARGLQDFVSTAAFVLVYLGFILASRHGWERKTVSLFPTRDERQEAVN 160

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
               +   +       T+  +   +         G+ + V   ++  I + IP    I  
Sbjct: 161 AFLRIRNGVEQYLWVQTVTGLMIAVASWIVMAAVGLDNAVFWAILIFIASYIPVVGGIVA 220

Query: 263 T--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
                   LL    ++ A  L          V   ++P + G  + +  +     L    
Sbjct: 221 VAAPPIFALLQFDTLWQAIVLLAVLQGVTMFVGNVVQPRMQGRSLNMDPIVLLLALAFWT 280

Query: 321 RTMGLLGLFIGPVLMALIAVIW 342
              GL G F+   L  ++ VI 
Sbjct: 281 VIWGLAGAFLSTPLTVMLMVIL 302


>gi|16760382|ref|NP_455999.1| transport protein [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|16764826|ref|NP_460441.1| transport protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29141854|ref|NP_805196.1| transport protein [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|167994459|ref|ZP_02575550.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168229860|ref|ZP_02654918.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168241001|ref|ZP_02665933.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168260355|ref|ZP_02682328.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168463103|ref|ZP_02697034.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|194443521|ref|YP_002040728.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194451154|ref|YP_002045517.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194469032|ref|ZP_03075016.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197264890|ref|ZP_03164964.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|198243169|ref|YP_002215658.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200390120|ref|ZP_03216731.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|207857018|ref|YP_002243669.1| transport protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213646062|ref|ZP_03376115.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|238911713|ref|ZP_04655550.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|289809740|ref|ZP_06540369.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
 gi|289823744|ref|ZP_06543356.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25325145|pir||AH0682 probable membrane protein STY1587 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16420000|gb|AAL20400.1| putative membrane transport protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16502677|emb|CAD01833.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137482|gb|AAO69045.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|194402184|gb|ACF62406.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194409458|gb|ACF69677.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194455396|gb|EDX44235.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|195634503|gb|EDX52855.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197243145|gb|EDY25765.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197937685|gb|ACH75018.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199602565|gb|EDZ01111.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205327680|gb|EDZ14444.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205335409|gb|EDZ22173.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205339314|gb|EDZ26078.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205351272|gb|EDZ37903.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206708821|emb|CAR33149.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261246682|emb|CBG24492.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267993377|gb|ACY88262.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158011|emb|CBW17506.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|321224097|gb|EFX49160.1| Putative transport protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322616099|gb|EFY13015.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322620548|gb|EFY17410.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322622949|gb|EFY19791.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322628744|gb|EFY25529.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631454|gb|EFY28212.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322638789|gb|EFY35484.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322641046|gb|EFY37690.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322646589|gb|EFY43097.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649046|gb|EFY45487.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322654560|gb|EFY50881.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322658672|gb|EFY54930.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322665195|gb|EFY61383.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322667939|gb|EFY64099.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322671649|gb|EFY67770.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322677304|gb|EFY73368.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322680032|gb|EFY76071.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685538|gb|EFY81534.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323129748|gb|ADX17178.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323191877|gb|EFZ77124.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323198165|gb|EFZ83274.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323203333|gb|EFZ88359.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323205648|gb|EFZ90611.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323214085|gb|EFZ98848.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323217318|gb|EGA02038.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221938|gb|EGA06330.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323223609|gb|EGA07922.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323232193|gb|EGA16299.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323234364|gb|EGA18451.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237815|gb|EGA21874.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323242621|gb|EGA26642.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323249646|gb|EGA33557.1| pheromone autoinducer 2 transporter [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323254461|gb|EGA38275.1| pheromone autoinducer 2 transporter [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255967|gb|EGA39707.1| pheromone autoinducer 2 transporter [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260993|gb|EGA44589.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266703|gb|EGA50190.1| pheromone autoinducer 2 transporter [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323272256|gb|EGA55667.1| pheromone autoinducer 2 transporter [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326623403|gb|EGE29748.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 344

 Score = 65.2 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/328 (14%), Positives = 113/328 (34%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ +IL  + F      P + AL I     P+      +         
Sbjct: 7   TLNGLKIVIMLGMLVVILSGIRFAADIIVPFILALFIAVVLNPVVQRMT-RCRIPRVIAV 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +  V ++ L ++ L +L                  N+    +P++ S +   +   E W
Sbjct: 66  SLLIVIIVMLMVLLLAYLGTSL--------------NELARTLPQYRSSLVIPLQRIEPW 111

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +      S+  L++       +  +    ++          SI  +++ + F   +   
Sbjct: 112 LQRAGIGVSVDELAKYIDPNAAMTLVTNLLTQLSNAMS----SIFLLLLTVVFMLLEVPQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + ++L  +     P       +     +    +  T I+I  GLV         V     
Sbjct: 168 LPEKLQQMMSR--PVEGMAAIQRALDSVSHYLVLKTAISIVTGLVAWGMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++     I +L+    ++A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAALPPIIQVLVFNGFYDALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|330686149|gb|EGG97767.1| putative membrane protein [Staphylococcus epidermidis VCU121]
          Length = 361

 Score = 65.2 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/330 (13%), Positives = 114/330 (34%), Gaps = 13/330 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P L +  + +   P + + + K         +   V ++ +  + + F+    +  + 
Sbjct: 41  FLPFLISGFLFYICLP-FQTLLEKWGFPRWASILTIFVVLIAIIAIVVAFIAPIIISNIN 99

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L+ +     +    +  +   +          T  +++         T + +N I +I 
Sbjct: 100 NLIKQTPALQRETERLINF--SLTQIDKLPSDVTHRINNMVKSMGDGVTDVLSNSISYIT 157

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              S            +I +   L +  +D       +    +     +   + + +   
Sbjct: 158 SLISTI--------FLLIMVPFFLIYMLKDHEKFIPAVAKFFKGERKVFVVDLLKDLNYT 209

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYL 269
           ++S   G   +++  G++L   Y + G+P    L +   +  +IP  G  +SFT  +I  
Sbjct: 210 LKSYIQGQVTVSVILGIILYIGYTIIGLPYTPLLVLFAGVANLIPFLGPWLSFTPAAILG 269

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           +I G       + +   I   +    + P ++G  + +  L     ++      G   + 
Sbjct: 270 IIDG-PSTFIWVCVITLIAQQLEGNVITPNVMGKSLSMHPLTIIVVILAAGDLGGFTLIL 328

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISSN 359
           I   L A++  +        +   +K +SN
Sbjct: 329 IAVPLYAVLKTVISNIFKYRQRIIDKANSN 358


>gi|223986201|ref|ZP_03636220.1| hypothetical protein HOLDEFILI_03530 [Holdemania filiformis DSM
           12042]
 gi|223961838|gb|EEF66331.1| hypothetical protein HOLDEFILI_03530 [Holdemania filiformis DSM
           12042]
          Length = 355

 Score = 65.2 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/320 (13%), Positives = 100/320 (31%), Gaps = 35/320 (10%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
            +P+L + +I F   P    F+ K          +     + L ++ +  +    M +  
Sbjct: 43  LSPLLFSCLIVFLFEP----FVEKLPFPRGISCSLVYFGFLGLLVLGIGMMVPLVMEQGS 98

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           +L+ +                    G    +L      H          F          
Sbjct: 99  QLLGEA-------------------GRLREQLAATEFFHWAGQLDWHGVFTAG------Y 133

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
             A       +D         +  +F   D  +  + L          +W    +   +V
Sbjct: 134 EAAMSATRSAVDRLSFFGVSFLGAYFIALDMEAFGRILKKRLPSY--QHWLLFYKTSSRV 191

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS--FTAVSIY 268
           +     G+ +  +   + +     +  VP+ V   ++ A+  +IP           +   
Sbjct: 192 VYHYLRGLALDLLFLMITVSVLLLIFSVPNAVFYAIMLALFNLIPYLGATVGQIVILLAQ 251

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
               G I     + LW  +   I    ++P +    + L  + T   L+ G    G++G+
Sbjct: 252 YFATGQIPWLLGVLLW--LIQQIEANWVQPLIFKKVMNLRPVYTLIALLAGGCFFGMIGI 309

Query: 329 FIGPVLMALIAVIWKESIMA 348
            + P+L A++ + ++  + A
Sbjct: 310 ILAPILAAIVQLAYRSYLFA 329


>gi|27380070|ref|NP_771599.1| hypothetical protein blr4959 [Bradyrhizobium japonicum USDA 110]
 gi|27353224|dbj|BAC50224.1| blr4959 [Bradyrhizobium japonicum USDA 110]
          Length = 388

 Score = 65.2 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/343 (12%), Positives = 106/343 (30%), Gaps = 10/343 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +++  +L   ++       + + +++G     + ++   +     T    I  +++ 
Sbjct: 35  ISVVLVTALLAFTWYFAATLLLIFTGMLLGVGLNALTNALGRRVHLPHTMRLAIVCIALA 94

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLAN---------QHGIPVPRWLSDIPGGMWASEL 122
            +    + +L    + E   L+SK + +           HGI    +         +++ 
Sbjct: 95  LMLAG-VAYLGGATIAEQASLLSKTIRSQITNVKSFLDTHGIDTSFFDFGNAAPAASTDA 153

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            +    +      L       +    I     +  +  +    +I  ++     F     
Sbjct: 154 GSTPTPNTAPRGNLPGAGALASSGGAIVSQTFKLLLGTISAVGNIFIVLFLGLAFAAQPS 213

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                L  L           I   + + +    +   I+ +  G+V      + G+P   
Sbjct: 214 VYHDGLLFLVPARHRTRATLIVDRISETLERWLIAQIIVMLAVGVVTWIGLAIIGIPGSF 273

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            LG+   ++A IP    I    V +   +      A    +       +    L P L  
Sbjct: 274 ILGIQAGLLAFIPTVGAIIAGVVVVLASLASGWIPALSALILFLGVHAMESYVLTPLLQR 333

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             + +P    F   +      G+ GL +   L+A+  V+    
Sbjct: 334 QALDIPPATLFAFQILLGVVFGIWGLALALPLVAIAKVMIDHF 376


>gi|150019553|ref|YP_001311807.1| hypothetical protein Cbei_4743 [Clostridium beijerinckii NCIMB
           8052]
 gi|149906018|gb|ABR36851.1| protein of unknown function UPF0118 [Clostridium beijerinckii NCIMB
           8052]
          Length = 363

 Score = 65.2 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 55/343 (16%), Positives = 120/343 (34%), Gaps = 16/343 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +     + R  ++ II+  +Y L+      L      + ++ +      + ++      +
Sbjct: 7   LFKKDIVRRICVLLIIVFFMYILRSMLNLFLLTFFFTYIAYSLQVGITKRLDKFIKVKPI 66

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           I T+ +       ++F  Y  +  +      +    + G+ + R+     GG   S    
Sbjct: 67  IVTLFLYIFMTSIIIFASYRYIPII------IRQLTEIGMKISRFDFRDIGGEVLSTYIV 120

Query: 125 KHLSHPQSLKILSETFLKTNGI-DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +      +     + +      D   R+AS  G    +  +S+I  +    FF  +   
Sbjct: 121 PYFGKFDFMSFFRNSEINELLNFDQFLRYASNIGTWSFNIFVSLILSL----FFMVEREK 176

Query: 184 ISQQLDSLGEH---LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           I +      +    +   Y K                  IIA    ++   + +  G P 
Sbjct: 177 IKEFFSEFQDSKIAILYRYTKDFGINFLNSFGKVIQAQIIIAFVNSILSVISLFALGFPQ 236

Query: 241 HVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            + LGV+  + +++P    I+    +SI     G       + +  A+   +    L P 
Sbjct: 237 VLGLGVMIFLFSLVPVAGTIASLIPLSIIAYTVGGFKMILYILIIIAVLHALESYVLNPR 296

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            +    +LP    F  L+     MG+ GL +G P+LM ++ ++
Sbjct: 297 FMADKTELPVFVVFITLLVSEHFMGVWGLLLGVPLLMFVLDLL 339


>gi|221639768|ref|YP_002526030.1| hypothetical protein RSKD131_1669 [Rhodobacter sphaeroides KD131]
 gi|221160549|gb|ACM01529.1| Hypothetical Protein RSKD131_1669 [Rhodobacter sphaeroides KD131]
          Length = 331

 Score = 65.2 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 56/178 (31%)

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
             FAS           +++ ++    +   D     + L +L          ++  I   
Sbjct: 116 GGFASTAVSATFGALGNVVIILFIGLYTAVDPGLYRRGLRALLAPPLRPRGDEVLAIADG 175

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            +R    G  I     G++     WL G+P    LG+I A++  IP   P+     ++ L
Sbjct: 176 TLRGWLGGQIISMTVVGVLTWLGLWLIGIPLAFILGLIAALLTFIPNIGPVLSAVPALLL 235

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            +         +              + P +    + LP        +      GL+G
Sbjct: 236 ALPEGAEQVGLVLAVFLTVQTFESYLVTPLIQKERVALPPALIISAQLLMGVLFGLMG 293


>gi|148543369|ref|YP_001270739.1| hypothetical protein Lreu_0130 [Lactobacillus reuteri DSM 20016]
 gi|184152779|ref|YP_001841120.1| hypothetical protein LAR_0124 [Lactobacillus reuteri JCM 1112]
 gi|227364443|ref|ZP_03848533.1| membrane protein [Lactobacillus reuteri MM2-3]
 gi|325683642|ref|ZP_08163158.1| permease [Lactobacillus reuteri MM4-1A]
 gi|148530403|gb|ABQ82402.1| protein of unknown function UPF0118 [Lactobacillus reuteri DSM
           20016]
 gi|183224123|dbj|BAG24640.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
 gi|227070536|gb|EEI08869.1| membrane protein [Lactobacillus reuteri MM2-3]
 gi|324977992|gb|EGC14943.1| permease [Lactobacillus reuteri MM4-1A]
          Length = 341

 Score = 65.2 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 84/215 (39%), Gaps = 9/215 (4%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           +GI       +  G I + + +S+I      FF+  +   +++   S  +  F  +++ I
Sbjct: 131 HGITIAVSTLTSIGAITVSFVMSLILS----FFYTLELKQMNEFSHSFLDSDFGWFFQDI 186

Query: 204 S---RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
               +               IAI   ++         +P   AL +I  I +++P  G  
Sbjct: 187 DYFGKKFVNTFGVVLEAQFFIAICNTVITTIGLLFMRMPQIFALSLIVFIFSLVPVAGVI 246

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS   +++     G I +   + +   I   +    L P  +     LP   TF  L+ G
Sbjct: 247 ISTIPLAMVGYSVGGIRDVVYIIIMIIIIHTLEAYVLNPKFMSSRTDLPIFYTFIVLLIG 306

Query: 320 VRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENK 353
               G  GL +G P+   L+ V+  +SI   K++K
Sbjct: 307 EHLFGTWGLIVGVPIFTFLLDVLGVKSIRGAKKSK 341


>gi|331698035|ref|YP_004334274.1| hypothetical protein Psed_4259 [Pseudonocardia dioxanivorans
           CB1190]
 gi|326952724|gb|AEA26421.1| protein of unknown function UPF0118 [Pseudonocardia dioxanivorans
           CB1190]
          Length = 405

 Score = 65.2 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 104/313 (33%), Gaps = 21/313 (6%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             PV  AL++     P++    ++      + A +     +   +V +       + ++ 
Sbjct: 56  IGPVFLALVLVIALAPVHGRLRNRGW--PGWAATLVLALSVYAVVVSIALGIIVSIGQLA 113

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
             + +    ++  +              AS   T+    P+ L+ + ++      +  + 
Sbjct: 114 TTLPQYAAQSRDLV------------SSASSTLTRFGVSPEELRKVVDSLDLGKLVQVVG 161

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              +    +  +    +  ++        +  ++ +++  +   +         R     
Sbjct: 162 SVLADVAGLASNLIFLLTLLLFLT----IENVTVPKRVGRIA--VDRPLVAGALRSFAHN 215

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
            R   L  T+  +    +   A ++ G+P  V  GV+  +   IP  G  I     ++  
Sbjct: 216 TRQYLLVSTVFGLIVAALDTIALFVMGIPLAVTWGVLAFVTNYIPNVGFIIGLVPPALLA 275

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           L+ G       +     +  F++   L+P  VG  + L    TF  LV     +G LG  
Sbjct: 276 LLTGGPGLMVAVIAVYGVLNFVIQSLLQPRFVGDAVGLSVTVTFLSLVFWAWLLGPLGAV 335

Query: 330 IGPVLMALIAVIW 342
           +   L  L   + 
Sbjct: 336 LAIPLTLLAKALL 348


>gi|326569354|gb|EGE19414.1| hypothetical protein E9U_06901 [Moraxella catarrhalis BC8]
          Length = 369

 Score = 65.2 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 56/338 (16%), Positives = 120/338 (35%), Gaps = 9/338 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV-IAT 67
           + +     + + L +L+ +K   AP ++A I+ +   P+ S              V I+ 
Sbjct: 11  RRLFILAALCLFLYALFLMKTVIAPFVAAFILAYFLNPLVSRLALIMPRILAVSVVYISC 70

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             VM   I+ L+ + +  M  + E +  ++           W++                
Sbjct: 71  FVVMGALIIWLVPMVWAQMQILWESLPHIITWYNDTGR--AWIARYTDSELLP---LDID 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +     +   + N +  + +     G+   +    I+ + I  F+F          
Sbjct: 126 LISNTALDYFQNNYQVNDVQGLIKQVFSSGISAANNIGLIVMVPILTFYFLLGWDQRLYT 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                   +     +I+R     + +   G  ++ +  G +      L G+   + +G+ 
Sbjct: 186 WKLSIPKPYTNKVVRIARDCDTALMNFAKGQFLVMLLLGAIYAIQLQLIGLQLGLIIGIT 245

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--DKTLRPFLVGGP 304
             I + +P  G  I   A  I  L +  +       ++GA  +  V     L+P L+G  
Sbjct: 246 AGIASFVPYLGFGIGIIAALIAGLFQFGLDWIYLGLIFGAFMIGQVVEGYILQPLLLGDK 305

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           I L  L   F ++ G    G +G+ I   + A+I V++
Sbjct: 306 IGLSPLWVIFSVLAGASLFGFVGMLIALPVSAVINVLF 343


>gi|289628956|ref|ZP_06461910.1| PerM family membrane protein [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289651062|ref|ZP_06482405.1| PerM family membrane protein [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|330868046|gb|EGH02755.1| PerM family membrane protein [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 356

 Score = 65.2 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 109/343 (31%), Gaps = 16/343 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + + ++  +++F+    +  L G  APV++ L++ F    + S     +      + ++ 
Sbjct: 15  DEEAVVLAVLLFLAFTLVLTLGGMLAPVIAGLVLAFLMHGLVSVLERLRLPEMAAVGLVF 74

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           T+           F+    +  +  +              P  L+     +        H
Sbjct: 75  TL-----------FIGVLLLFLLVLVPLLWHQLITLFNEAPGMLAKWQSVLLLLPERYPH 123

Query: 127 LSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           L   + + +  E      G        F+     + ++  + ++ + I +FFF +D   I
Sbjct: 124 LVSDEQVLLAIEVARGEVGKIGQLALTFSISSLPLLVNLMIYLVLVPILVFFFLKDRHMI 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +           A   +++  + + I +   G  I     G V   A+   G+     L
Sbjct: 184 GRWARGYLPR-ERALINRVAEEMKRQIANYIRGKVIEIFICGGVTYIAFAALGLNYAALL 242

Query: 245 GVITAI--MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            ++  I  +    G   ++     I L   G       L +   I   +    L P L  
Sbjct: 243 AMLVGISVVVPYVGAVVVTVPVALIGLFQWGWGDQFIYLMIAHGIIQALDGNVLVPLLFS 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             + L  +     ++      G  G+F    L  L   +    
Sbjct: 303 EAVNLHPVAIICAVLLFGGLWGFWGIFFAIPLATLFKAVLDAW 345


>gi|83942810|ref|ZP_00955271.1| Conserved hypothetical membrane/transport protein [Sulfitobacter
           sp. EE-36]
 gi|83846903|gb|EAP84779.1| Conserved hypothetical membrane/transport protein [Sulfitobacter
           sp. EE-36]
          Length = 365

 Score = 65.2 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 53/344 (15%), Positives = 121/344 (35%), Gaps = 19/344 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E + + +  ++ +++  + V+ YF K    P++   ++  T  P+  +            
Sbjct: 2   EHLPSIRRSLQLLVLISLFVTAYFAKDLILPIVLGFLLALTLSPVGRALYRIGVPHPVSA 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGM--LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            ++ T + + +  V LL      +   E+ E+  ++ +           +          
Sbjct: 62  FLLVTATSLVIAAVVLLSAGTVAIWSDEIPEMGREIQIKLSGVSNAVETMRS--ASEEVE 119

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +L T+    PQ + +     L T         A            S+  ++I   F    
Sbjct: 120 KLGTETGGKPQEVVVRQPGLLDTAMDTVSKTGA------------SLAVILILALFLLGS 167

Query: 181 GFSISQQLDSLGEHLFP-AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           G     +L      L            V K +    L +  I    G+++G+   + G+P
Sbjct: 168 GELFYLKLVQSMPTLTEKKRALHTVYDVEKRVSRYLLTIATINAVLGILVGTYLTVLGLP 227

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK-TLR 297
           S    G+   ++  +P  G       V+ + L+  +      L   G + L +++   + 
Sbjct: 228 SAYIWGIAAFMLNFLPYIGGFAGVLLVAGFSLVTFDTIGYAMLAPIGYLTLTLLEGQIIT 287

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           P+LVG  +++  +  F  +V      G+ G  +    + +  V+
Sbjct: 288 PWLVGRRLEMNTVAVFLTVVFWGWLWGIPGALVAVPFLVVFKVV 331


>gi|298486116|ref|ZP_07004180.1| predicted membrane protein [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298159361|gb|EFI00418.1| predicted membrane protein [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 356

 Score = 65.2 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 109/343 (31%), Gaps = 16/343 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + + ++  +++F+    +  L G  APV++ L++ F    + S     +      + ++ 
Sbjct: 15  DEEAVVLAVLLFLAFTLVLTLGGMLAPVIAGLVLAFLMHGLVSVLERLRLPEMAAVGLVF 74

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           T+           F+    +  +  +              P  L+     +        H
Sbjct: 75  TL-----------FIGVLLLFLLVLVPLLWHQLITLFNEAPGMLAKWQSVLLLLPERYPH 123

Query: 127 LSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           L   + + +  E      G        F+     + ++  + ++ + I +FFF +D   I
Sbjct: 124 LVSDEQVLLAIEVARGEVGKIGQLALTFSISSLPLLVNLMIYLVLVPILVFFFLKDRHMI 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +           A   +++  + + I +   G  I     G V   A+   G+     L
Sbjct: 184 GRWARGYLPR-ERALINRVADEMKRQIANYIRGKVIEIFICGGVTYIAFAALGLNYAALL 242

Query: 245 GVITAI--MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            ++  I  +    G   ++     I L   G       L +   I   +    L P L  
Sbjct: 243 AMLVGISVVVPYVGAVVVTVPVALIGLFQWGWGDQFIYLMIAHGIIQALDGNVLVPLLFS 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             + L  +     ++      G  G+F    L  L   +    
Sbjct: 303 EAVNLHPVAIICAVLLFGGLWGFWGIFFAIPLATLFKAVLDAW 345


>gi|150016078|ref|YP_001308332.1| hypothetical protein Cbei_1194 [Clostridium beijerinckii NCIMB
           8052]
 gi|149902543|gb|ABR33376.1| protein of unknown function UPF0118 [Clostridium beijerinckii NCIMB
           8052]
          Length = 322

 Score = 65.2 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 119/326 (36%), Gaps = 25/326 (7%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +     +    +L+  +F+K +F P LS +II     PIY   I  K  S    A+   
Sbjct: 9   KKLFSLLLSFVFVLIGTFFIKYYFKPFLSMIIIIIVCAPIYKIMIKAKMPSKIAGALSIV 68

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
              + + +V       Y   E+  ++ K+            +L+++       +  +  L
Sbjct: 69  TVNIIIILV-----TIYLGSEIFYIIKKL------------YLTNLEWIEKFIQDISVAL 111

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +   +   + ++ +       I + A   G   L Y +      I  FF   D   I + 
Sbjct: 112 NVNFNNLEIGKSVISIINDQNIRKGAVNTGDSVLAYFIGN----ICAFFILIDKSKILEL 167

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  L        ++       ++I        I+ I   + +   + + GV +  ALG++
Sbjct: 168 ISMLLPKEMMMKFRDQKENFTQMIGI----EGILVIISTMEIIMGFCILGVSNFFALGIV 223

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             I+ ++P    I      I   I    F      +   I + ++ + L    +G  + +
Sbjct: 224 CGILDILPYVGTIIVFIPIIIYNIIMKNFLTAFGLICLYILVQVIREILEAKFLGDKLDM 283

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPV 333
             L     +  GV+  G+LG+ IGP+
Sbjct: 284 HPLVILLSIYIGVKIFGVLGILIGPM 309


>gi|90962471|ref|YP_536387.1| hypothetical protein LSL_1500 [Lactobacillus salivarius UCC118]
 gi|90821665|gb|ABE00304.1| Conserved hypothetical protein [Lactobacillus salivarius UCC118]
          Length = 351

 Score = 65.2 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 55/355 (15%), Positives = 125/355 (35%), Gaps = 23/355 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  L  + + R+ ++  ++  LY  +     +L   I  F    +  +   K +  S  +
Sbjct: 7   QRFLGNERLRRFTVLLFLVGVLYLARSMMNLILLTFIFSFLVISLNDAIRKKIDIPSKLI 66

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            +I  + ++    + +       + + + LV+ +V    H            G      +
Sbjct: 67  VIIVYLLMIGGIYLAITIYLPKLVTQTENLVNYIVKFYNHPP---------KGTNDVINM 117

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            T+++S    +K +        G+  I ++ +  G       ++ I  ++  FFF  D  
Sbjct: 118 VTQYISQSDIMKQMR------GGMSIIVKYLANIGT----MGMTFIMALLLSFFFTIDKD 167

Query: 183 SISQQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            + +   S  +  +  ++      ++I             IIA+    +  +      +P
Sbjct: 168 DLFKFSKSFLKGPYSWFFNDVYYFAKIFVNSFGVVLETQFIIALINTAITTTILACMKMP 227

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              +L ++   M+MIP  G  IS   + +     G +     + +   +   +    L P
Sbjct: 228 QLFSLALLIFFMSMIPVAGVIISAIPMMLIGYTVGGVRYIIYIIIMLCVVHALEAYVLNP 287

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L+    +LP   TF  L       G+ GL +G  +   +  I       I+  +
Sbjct: 288 KLMSSRTELPIFYTFVVLYVSEHLFGMWGLIVGIPVFTFLLDILGVKSDHIRRER 342


>gi|56413554|ref|YP_150629.1| transport protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197362478|ref|YP_002142115.1| transport protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56127811|gb|AAV77317.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197093955|emb|CAR59447.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 344

 Score = 65.2 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/328 (14%), Positives = 114/328 (34%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ +IL  + F      P + AL I     P+      +         
Sbjct: 7   TLNGLKIVIMLGMLVVILSGIRFAADIIVPFILALFIAVVLNPVVQRMT-RCRIPRVIAV 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +  V ++ L ++ L +L                  N+    +P++ S +   +   E W
Sbjct: 66  SLLIVIIVMLMVLLLAYLGTSL--------------NELARTLPQYRSSLVIPLQRIEPW 111

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +      S+  L++       +  +    ++      +   SI  +++ + F   +   
Sbjct: 112 LQRAGIGVSVDELAKYIDPNAAMTLVTNLLTQ----LPNAMSSIFLLLLTVVFMLLEVPQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + ++L  +     P       +     +    +  T I+I  GLV         V     
Sbjct: 168 LPEKLQQMMSR--PVEGMAAIQRALDSVSHYLVLKTAISIVTGLVAWGMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++     I +L+    ++A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAALPPIIQVLVFNGFYDALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|224540904|ref|ZP_03681443.1| hypothetical protein CATMIT_00055 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526137|gb|EEF95242.1| hypothetical protein CATMIT_00055 [Catenibacterium mitsuokai DSM
           15897]
          Length = 419

 Score = 65.2 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 59/190 (31%)

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
           F S  G  F+    S    +  L    +      + +  +  H        I        
Sbjct: 187 FVSNVGGSFITAITSFFMALYLLANKEKHLEQGRKLIAYILGHKRAGIAFDIMSEANHYF 246

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
            S   G  + A    L +  A  L G+P    + ++  + + +P           + L+ 
Sbjct: 247 NSFVTGQMLEATCFMLEVYIAMRLFGMPFPELIAIMAFLFSFVPMFGNFITFFAGLILVA 306

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
                +     +            + P +VG  + +  L    G+       G++G+ IG
Sbjct: 307 AAQSKSMLAFAIIYLCLQQFEGNVVYPKIVGKSVGIGGLFVLLGITIFGNLWGVIGILIG 366

Query: 332 PVLMALIAVI 341
             L ALI  +
Sbjct: 367 VPLTALIYAV 376


>gi|329896026|ref|ZP_08271262.1| Putative permease PerM (YfgO) [gamma proteobacterium IMCC3088]
 gi|328921986|gb|EGG29350.1| Putative permease PerM (YfgO) [gamma proteobacterium IMCC3088]
          Length = 363

 Score = 65.2 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 61/346 (17%), Positives = 120/346 (34%), Gaps = 12/346 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
              +   + ++  +++ + L  +  L    AP+++ALI+ +    + +   S        
Sbjct: 10  DRYLFEEESVLLLVLISVTLFLMMVLGAVMAPIVAALILAYLVQGVSTRMQS-VGLPKWM 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             + A    + +F   +L LF     ++  L S+     +        L D      + +
Sbjct: 69  GFIAAYGLFLAVFFGSILGLFPLVWRQLATLASEFPRMVKEVQAALSVLPDRYPQFISEQ 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                ++  Q     +   L    ++ IP              + +I + + +FFF +D 
Sbjct: 129 QIVDLIASVQRELAPAGQKLLELSLNSIP--------GLFGVMIYLILIPLLVFFFLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I+  L        P   ++I   +   I +   G  I  +  G V   A+   G+   
Sbjct: 181 DVITGWLSGQLPKERPLL-RRIWAEMDLQIANYARGKAIEVLIVGSVSYIAFLTLGLNYA 239

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPF 299
             LG++  +  +IP  GA +    V +    +  I N     L   + + I+D   L P 
Sbjct: 240 ALLGLLVGLSVIIPYVGATLVTIPVVLVAFFQWGIGNEFYTVLAVYLVIQILDGNVLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           L    + L  +     ++      GL G F    L  LI  I    
Sbjct: 300 LFSEAVNLHPVAIILAVLFFGGVWGLWGAFFAIPLATLIKAIMNAW 345


>gi|213963730|ref|ZP_03391980.1| membrane protein [Capnocytophaga sputigena Capno]
 gi|213953610|gb|EEB64942.1| membrane protein [Capnocytophaga sputigena Capno]
          Length = 358

 Score = 65.2 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 54/347 (15%), Positives = 120/347 (34%), Gaps = 24/347 (6%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE-ESSTFLAVIATVSVMC 72
            +++ + L +LY L+     ++ +L++     P+   F  + + +S T   ++     + 
Sbjct: 17  IVLVVLGLYTLYLLQSIIIYLIVSLVLTLMGKPLIQFFYKRLKIKSKTVCVILTMTIFIL 76

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           L +          + + K L    +   +  I                +  +K     + 
Sbjct: 77  LALSVFSLFIPLLVSQGKNLSGLNIDLLKTNID-----------NLIQQTLSKVGLQKED 125

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                +  L       IP F + F     D+ +    ++   FFF +DG  I   L S  
Sbjct: 126 YSFGVQEMLNFID---IPNFLNSFISFISDFGVGAFSVLFISFFFMKDGEKILIALLSTF 182

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                   K     +  ++   F+G+ +      ++      + GV +   + ++ A++ 
Sbjct: 183 STHRKRKLKTSIFKINNLLSRYFVGLILQITILFVIYTVILLIFGVENAFIIALLCALLN 242

Query: 253 MIPGGAPISFTAVSIYLLIKGNI--------FNATCLFLWGAIELFIVDKTL-RPFLVGG 303
           +IP   P+    +   L +  N+           T   L G +   +VD    +P +   
Sbjct: 243 LIPYVGPMIGFVLMALLTMSSNLQNDFMSVSLPTTIYVLVGFLIGQLVDNVFSQPLIFSN 302

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            +K   L  F   +      G++G+ +      ++ V+ KE     K
Sbjct: 303 SVKSTALEIFLITLISGTLFGMVGMVVAIPAYTVLKVVLKEFFPNNK 349


>gi|300865893|ref|ZP_07110634.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300336102|emb|CBN55792.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 350

 Score = 65.2 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/307 (14%), Positives = 96/307 (31%), Gaps = 14/307 (4%)

Query: 10  GIMRWMIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           G+ +W+    +L SLY L   +       +A+I+      +                 +A
Sbjct: 2   GLGKWIGFLALLASLYILWKIRTIVLLFFTAVILAIALNRLVRRLQQS-GAKRGVAIALA 60

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
              ++    V L  +      + +EL   V L  +       WL     G         +
Sbjct: 61  IAILVTASAVLLTLIVTRLSNQFQELSQLVPLGIEQLRIWSNWLQARLPGQIVD-----N 115

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           L     L    +TF +     +      ++   +L   ++ + + +       +      
Sbjct: 116 LPSIDDLTQEIQTFFR-----WTTSHIYQWFSNYLSLIINTLLITVLTIMLLVNPMPYRH 170

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            + SL    +     +I     + +     G+ +     G+      ++  VP     G+
Sbjct: 171 AIISLFPAFYRQRADEIFSKCEEGLMGWLAGVALSMSFIGITSIIGLFVLQVPLPFVNGL 230

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +  I+A+IP    I      + L +  +   A  + L   +   I    + P ++   + 
Sbjct: 231 LAFILALIPYIGAILSVIPPLLLALLDSPSKAGAVLLLYFLIQQIEGNLVTPIIMEKQVS 290

Query: 307 LPFLPTF 313
           L    T 
Sbjct: 291 LLPAYTL 297


>gi|293376684|ref|ZP_06622910.1| putative membrane protein [Turicibacter sanguinis PC909]
 gi|292644702|gb|EFF62786.1| putative membrane protein [Turicibacter sanguinis PC909]
          Length = 385

 Score = 65.2 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 56/323 (17%), Positives = 119/323 (36%), Gaps = 6/323 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIATVSVMCLFIVPLLFLFYY 84
           F+ GF    L   I+ F    ++  FI   ++S      +++ ++   +F V + F+   
Sbjct: 50  FIIGFIIAYLINFILKFYEDRVFKKFIKGSKKSLRGVAVILSYLTASLIFYVFIQFVVPQ 109

Query: 85  GMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
            +  +  LV+ +        + + + L++         L    L+   +  +   T L  
Sbjct: 110 LVESITGLVNDIPRYLYDMKVILEQTLNETDISPEYMTLINDKLTEITNWVLQLVTNLLP 169

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
                +  FAS    I L   +S+  ++    FF      +    +    ++      + 
Sbjct: 170 IIGGIVMAFASSVWNIILGIIISVYLLVDKEKFFALGKKVVVALFNDKHANIILNLANRT 229

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
           +    K I     G  I +   G++      +  +P  + + VI  +  +IP   P    
Sbjct: 230 NLTFGKFIG----GKIIDSAIIGVLTFIILTIFKMPYSLLISVIIGMTNIIPFFGPFIGA 285

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             S  +++  +   A    +   +   I    + P ++G  I +      F ++   +  
Sbjct: 286 IPSAIIILFISPIKAVWFGIIILVIQQIDGNIIGPKILGDSIGISAFWILFAILVAGKLF 345

Query: 324 GLLGLFIGPVLMALIAVIWKESI 346
           GL+G+ IG  + ALI  I K+ I
Sbjct: 346 GLVGMIIGVPMFALIYSIVKDVI 368


>gi|289676514|ref|ZP_06497404.1| PerM family membrane protein [Pseudomonas syringae pv. syringae
           FF5]
          Length = 356

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 110/343 (32%), Gaps = 16/343 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + + ++  +++F+    +  L G  APV++ L++ F    + S     +      + ++ 
Sbjct: 15  DEEAVVLAVLLFLAFTLVLTLGGMLAPVIAGLVLAFLMHGLVSVLERLRMPEVAAVGLVF 74

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           T+           F+    +  +  +              P  L+     +        H
Sbjct: 75  TL-----------FIGVLLVFLLVLVPLLWHQLITLFNEAPGMLAKWQSVLLLLPERYPH 123

Query: 127 LSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           L   + + +  E      G        F+     + ++  + ++ + I +FFF +D   I
Sbjct: 124 LVSDEQVLLAIEVARGEVGKIGQLALTFSISSLPLLVNLMIYLVLVPILVFFFLKDRHMI 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +           A   +++  + + I +   G  I     G V   A+   G+     L
Sbjct: 184 GRWARGYLPR-ERALINRVADEMKRQIANYIRGKVIEIFICGGVTYIAFAALGLNYAALL 242

Query: 245 GVITAI--MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            ++  I  +    G   ++     I L   G       L +   I   +    L P L  
Sbjct: 243 AMLVGISVVVPYVGAVVVTVPVALIGLFQWGWGDQFIYLMIAHGIIQALDGNVLVPLLFS 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             + L  +     ++      G+ G+F    L  L   +    
Sbjct: 303 EAVNLHPVAIICAVLLFGGLWGVWGIFFAIPLATLFKAVLDAW 345


>gi|116327615|ref|YP_797335.1| permease [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116331774|ref|YP_801492.1| permease [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|116120359|gb|ABJ78402.1| Permease [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116125463|gb|ABJ76734.1| Permease [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 355

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 59/348 (16%), Positives = 132/348 (37%), Gaps = 22/348 (6%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +++F  +VSL+ L+    P++ AL+I +T   + +   S          +++   +M  
Sbjct: 20  LIVVFTTVVSLWGLQLLAVPIVLALLIFYTFNGMINDLESLGVPR-----ILSIAILMLF 74

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             +P+          +   ++           +  W  D+    +     T +L   +  
Sbjct: 75  TSIPIYLFINSVASPIASTLN---------PLLKNWKQDLDDAKFKYLTVTVNLQFNEFP 125

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII----FMIIALFFFYRDGFSISQQLD 189
              +ET      I  I          F+ Y  ++I       +  F F  +G  I + L 
Sbjct: 126 ASWNETIRPDELIKKIAELMHEQVKGFVSYIPTLIGYLLITPLFAFLFLLNGNGIYKSLI 185

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           SL  + +      I+  + + + +    + I ++    V    +++ G+P     G+   
Sbjct: 186 SLIPNRYFEMALMITYKINEQLTNYLKSLMIQSMIICAVSSLGFYIIGLPYFYIFGLFLG 245

Query: 250 IMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTL-RPFLVGGPI 305
           I   IP   PI  +   +   L+I G       + +   + +  I+D  L +P ++ G +
Sbjct: 246 IANSIPYLGPIMGAIPPLFFALVIGGAGTTGLMISILIVVSIAQIIDNFLVQPVVISGSM 305

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L  +     +  G   +GL+G+ I   + A++ V  +    ++K++ 
Sbjct: 306 SLHPIVIVGAVTVGGAALGLVGMLIAVPMAAILKVTIQTLYSSMKDHN 353


>gi|260905264|ref|ZP_05913586.1| predicted permease [Brevibacterium linens BL2]
          Length = 436

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 104/314 (33%), Gaps = 28/314 (8%)

Query: 12  MRWMIMFIILVSLYF-------LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
            R +++ + +  L +       L+   APV  AL      +P+       K   +   A 
Sbjct: 36  ARALVIALTIAGLAYALMFFKGLQDIVAPVFLALNFYIVVYPLQKYLTKLKVPRA-IGAT 94

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           I+ + V+ +         +     +  + S              +LSDI      S +  
Sbjct: 95  ISVLLVLVMIFGFFGLTAWSVAELVLLIPSYGEQLVATYQSALSFLSDI---GVTSSVLQ 151

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +         ++   +     +  +    +                ++A+FF   D   I
Sbjct: 152 QQFQQFNVRSLIDAVYPLLTNVSLVAGLLTTV--------------VMAVFFVAMDSMGI 197

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +++  L + + P+    +      V R   +      +   ++   A  +  VP     
Sbjct: 198 DRRMLMLLD-VKPSLAASLGGFASGVRRYWVVATVF-GLIVAVLDVIALAIIDVPLIWVW 255

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           GV+  +   IP  G  I     ++  L+     +A  + +  ++  F++   ++P   G 
Sbjct: 256 GVLAFLTNYIPNIGFVIGLIPPALLALVDSGWQSALWVVIAYSVLNFVIQSIIQPKFTGE 315

Query: 304 PIKLPFLPTFFGLV 317
            + +  L +F  L+
Sbjct: 316 SVGVTPLVSFLSLL 329


>gi|227543837|ref|ZP_03973886.1| permease [Lactobacillus reuteri CF48-3A]
 gi|300908905|ref|ZP_07126368.1| membrane protein [Lactobacillus reuteri SD2112]
 gi|227186214|gb|EEI66285.1| permease [Lactobacillus reuteri CF48-3A]
 gi|300894312|gb|EFK87670.1| membrane protein [Lactobacillus reuteri SD2112]
          Length = 344

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 74/203 (36%), Gaps = 8/203 (3%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           +GI       +  G I + + +S+I      FF+  +   +++   S  +  F  +++ I
Sbjct: 131 HGITIAVSTLTSIGAITVSFVMSLILS----FFYTLELKQMNEFSHSFLDSDFGWFFQDI 186

Query: 204 S---RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
               +               IAI   ++         +P   AL +I  I +++P  G  
Sbjct: 187 DYFGKKFVNTFGVVLEAQFFIAICNTVITTIGLLFMRMPQIFALSLIVFIFSLVPVAGVI 246

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS   +++     G I +   + +   I   +    L P  +     LP   TF  L+ G
Sbjct: 247 ISTIPLAMVGYSVGGIRDVVYIIIMIIIIHTLEAYVLNPKFMSSRTDLPIFYTFIVLLIG 306

Query: 320 VRTMGLLGLFIGPVLMALIAVIW 342
               G  GL +G  +   +  + 
Sbjct: 307 EHLFGTWGLIVGVPIFTFLLDVL 329


>gi|90425501|ref|YP_533871.1| hypothetical protein RPC_4026 [Rhodopseudomonas palustris BisB18]
 gi|90107515|gb|ABD89552.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           BisB18]
          Length = 374

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 52/329 (15%), Positives = 112/329 (34%), Gaps = 16/329 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +++ +I+ +LY  K FF PV++A ++G    P        +        +I T+      
Sbjct: 37  LLIIVIVAALYVAKPFFLPVVTAFVVGTMLSPAAGLMERHRIPRPVSAVLIVTLV----- 91

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
                 + +   L    +V       + G  +   L  +        +W +       + 
Sbjct: 92  ---FGMVAFIVALISAPVVEWSNRLPELGSMLKDKLQSL---DRPIAMWHQLQGSLGGID 145

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
             +   ++   I+++            +  L ++ +++ +             + +    
Sbjct: 146 SSTGPAIQFPKIEWVQPTYEFLSPTLTETLLFLVTLVLFIA---SWSDLRRGLVMTFASR 202

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                  +I   +   +    L +T+I +G G+  G    LAG+P+  ALG + A +   
Sbjct: 203 ETRLRALRILNEIEGSLGGYLLTVTLINLGYGIATGIICALAGMPNPAALGALAATLNFF 262

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE--LFIVDKTLRPFLVGGPIKLPFLPT 312
           P   P     +   + I         L    A     F+    + P ++G  + L  L  
Sbjct: 263 PIVGPFVMFVILTVVGIVSFPTLGGGLVAPMAFVGLTFVEGHFITPTIIGRRLSLNTLAV 322

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           F  L       G +G F+   L+ +  V+
Sbjct: 323 FIALAFWTWLWGPMGGFLASPLLIVALVV 351


>gi|313899413|ref|ZP_07832923.1| putative membrane protein [Clostridium sp. HGF2]
 gi|312955701|gb|EFR37359.1| putative membrane protein [Clostridium sp. HGF2]
          Length = 369

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/305 (14%), Positives = 110/305 (36%), Gaps = 11/305 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L+    P +   ++ +   P+      K    +         S++ +++  L+FL    
Sbjct: 44  MLRSILQPFIIGFVLAYVMHPLVEFLEKKGIPKN--------FSIIAIWVCVLVFLIVML 95

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           ++ M  L  K+       I    W+S+    +   + ++   S   ++  + +++   + 
Sbjct: 96  VMLMPVLYDKINEFMTSMIDGVVWISNKIKTLGNMKDFSLVNSITNNIVNILQSY--DDW 153

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +           L+   +++F II   +   D   I + L     HLF         
Sbjct: 154 VPQLVSSLPGLMNTVLNVVTNVLFSIIIAIYMLFDFERIKRGLRKFV-HLFFKNSDIYLH 212

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + + +      + I+ + + +   + Y++ G    + +G++T+   +IP        ++
Sbjct: 213 EIDQNVTVYLKSLIILMLIKFIEYSAFYFMIGHQDWLIIGLLTSFGVIIPYLGGTIANSI 272

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            I   +     N   L +   I   +    + P +      +  L T F +  G   MG 
Sbjct: 273 GIITALTLPPSNIVALIIGIMILSNVDAYVISPLVHEKRSAMGPLITLFAVFAGGVIMGA 332

Query: 326 LGLFI 330
           +G+ +
Sbjct: 333 VGIMV 337


>gi|312912463|dbj|BAJ36437.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
          Length = 344

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/328 (15%), Positives = 116/328 (35%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ +IL  + F      P + AL I     P+       +      +A
Sbjct: 7   TLNGLKIVIMLGMLVVILSGIRFAADIIVPFILALFIAVVLNPVVQRMTRCRIPR--VIA 64

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           V   + ++ + +VPLL      + E+                +P++ S +   +   E W
Sbjct: 65  VSLLIVIIVMLMVPLLAYLGTSLNELAR-------------TLPQYRSSLVIPLQRIEPW 111

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +      S+  L++       +  +    ++          SI  +++ + F   +   
Sbjct: 112 LQRAGIGVSVDELAKYIDPNAAMTLVTNLLTQLSNAMS----SIFLLLLTVVFMLLEVPQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + ++L  +     P       +     +    +  T I+I  GLV         V     
Sbjct: 168 LPEKLQQMMSR--PVEGMAAIQRALDSVSHYLVLKTAISIVTGLVAWGMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++     I +L+    ++A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAALPPIIQVLVFNGFYDALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|85711713|ref|ZP_01042770.1| Permease PerM [Idiomarina baltica OS145]
 gi|85694573|gb|EAQ32514.1| Permease PerM [Idiomarina baltica OS145]
          Length = 360

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/307 (14%), Positives = 105/307 (34%), Gaps = 21/307 (6%)

Query: 45  WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
           WP+     +         A I  +S+        LF     + +    + + +      +
Sbjct: 54  WPVNRLIDAGMG---RLAATIIVMSLTICIATLCLFTLVPVVWQQSTTLIRELPDMLANL 110

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID-FIPRFASRFGMIFLDY 163
            V  WL  +P      EL+   +   Q  +++     +  G+   I   +    +  +  
Sbjct: 111 QV--WLHKLP------ELFPSVIDESQITELMLTVKRRVVGLGEQILTSSLTSLVNVMAM 162

Query: 164 CLSIIFMIIALFFFYRDGFSISQ---QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
            + +I + + +FF  +D  ++     ++      L     ++++  +   IR   L + +
Sbjct: 163 LVYLIVVPLLVFFMLKDRNTLLAHFSRILPTNRRLITQVGQEMNLQIMNYIRGKALEVIV 222

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIY-LLIKGNIFNA 278
           +A+       + ++   +     L ++  +  +IP  GA +    V++  L   G     
Sbjct: 223 VAV----TSFAVFFAFDLRYTTLLSILVGLSVLIPYIGAVVVTIPVALVALFQFGATGPF 278

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             + +   I   +    L P L    + L  +     ++      G  G+F    L +L+
Sbjct: 279 IYVMIGYLIIQALDGNVLVPLLFSEAVSLNPVYIIAAVLIFGGIWGFWGVFFAIPLASLV 338

Query: 339 AVIWKES 345
             +    
Sbjct: 339 KAVITAW 345


>gi|326564423|gb|EGE14651.1| hypothetical protein E9O_06681 [Moraxella catarrhalis 12P80B1]
          Length = 369

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 55/338 (16%), Positives = 119/338 (35%), Gaps = 9/338 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV-IAT 67
           + +     + + L +L+ +K    P ++A I+ +   P+ S              V I+ 
Sbjct: 11  RRLFILAALCLFLYALFLMKTVITPFVAAFILAYFLNPLVSRLALIMPRILAVSVVYISC 70

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             VM   I+ L+ + +  M  + E +  ++           W++                
Sbjct: 71  FVVMGALIIWLVPMVWAQMQILWESLPHIITWYNDTGR--AWIARYTDSELLP---LDID 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +     +   + N +  + +     G+   +    I+ + I  F+F          
Sbjct: 126 LISNTALDYFQNNYQVNDVQGLIKQVFSSGISAANNIGLIVMVPILTFYFLLGWDQRLYT 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                   +     +I+R     + +   G  ++ +  G +      L G+   + +G+ 
Sbjct: 186 WKLSIPKPYTNKVVRIARDCDTALMNFAKGQFLVMLLLGAIYAIQLQLIGLQLGLIIGIT 245

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--DKTLRPFLVGGP 304
             I + +P  G  I   A  I  L +  +       ++GA  +  V     L+P L+G  
Sbjct: 246 AGIASFVPYLGFGIGIIAALIAGLFQFGLDWIYLGLIFGAFMIGQVVEGYILQPLLLGDK 305

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           I L  L   F ++ G    G +G+ I   + A+I V++
Sbjct: 306 IGLSPLWVIFSVLAGASLFGFVGMLIALPVSAVINVLF 343


>gi|88798200|ref|ZP_01113786.1| hypothetical protein MED297_13117 [Reinekea sp. MED297]
 gi|88778976|gb|EAR10165.1| hypothetical protein MED297_13117 [Reinekea sp. MED297]
          Length = 334

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/327 (15%), Positives = 109/327 (33%), Gaps = 28/327 (8%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             L   +    PVL A  +   + P  +  +  +            + +    +V LL  
Sbjct: 21  AGLKVAQPIVMPVLVAFFLAALTSPAVNLLVRFR----------MPLGIAITVVVVLLIG 70

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH--PQSLKILSET 139
           F+Y +  +             G    ++L  +P      ELW   L    P  ++ + + 
Sbjct: 71  FFYALGRV------------LGNSTEQFLDRLPDYQHQLELWLVQLKDKVPWLIEDIEQR 118

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
             +    D       R          +I+ ++  L F   +  + S++L           
Sbjct: 119 IAEFQPTDSAIAIVGRLFSGVGSVLTAIVLIVFTLIFTLLESRNASEKLRIA---FGDDK 175

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGA 258
                +   K+++   L  ++I++  G+++       GV   +  G    +M  IP  G+
Sbjct: 176 TIGYIKRFSKMVQRYLLVKSLISLATGILVAILLIFLGVDYPILWGTFAFLMNFIPNVGS 235

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            ++     I   ++  +               I+   + P L+G  + +  L  F  LV 
Sbjct: 236 LLAAIPPMILAGLQLGLPGFLITTGGFVAINMIIGNLIEPRLMGKTLDISPLIVFLSLVI 295

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKES 345
               +G +G+ +   L  +I +  +  
Sbjct: 296 WGWILGPIGMLLSIPLTVVIKIALEVY 322


>gi|326566730|gb|EGE16869.1| hypothetical protein E9K_00398 [Moraxella catarrhalis 103P14B1]
 gi|326575270|gb|EGE25198.1| hypothetical protein E9W_04713 [Moraxella catarrhalis CO72]
          Length = 369

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 55/338 (16%), Positives = 119/338 (35%), Gaps = 9/338 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV-IAT 67
           + +     + + L +L+ +K    P ++A I+ +   P+ S              V I+ 
Sbjct: 11  RRLFILAALCLFLYALFLMKTVITPFVAAFILAYFLNPLVSRLALIMPRILAVSVVYISC 70

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             VM   I+ L+ + +  M  + E +  ++           W++                
Sbjct: 71  FVVMGALIIWLVPMVWAQMQILWESLPHIITWYNDTGR--AWIARYTDSELLP---LDID 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +     +   + N +  + +     G+   +    I+ + I  F+F          
Sbjct: 126 LISNTALDYFQNNYQVNDVQGLIKQVFSSGISAANNIGLIVMVPILTFYFLLGWDQRLYA 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                   +     +I+R     + +   G  ++ +  G +      L G+   + +G+ 
Sbjct: 186 WKLSIPKPYTNKVVRIARDCDTALMNFAKGQFLVMLLLGAIYAIQLQLIGLQLGLIIGIT 245

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--DKTLRPFLVGGP 304
             I + +P  G  I   A  I  L +  +       ++GA  +  V     L+P L+G  
Sbjct: 246 AGIASFVPYLGFGIGIIAALIAGLFQFGLDWIYLGLIFGAFMIGQVVEGYILQPLLLGDK 305

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           I L  L   F ++ G    G +G+ I   + A+I V++
Sbjct: 306 IGLSPLWVIFSVLAGASLFGFVGMLIALPVSAVINVLF 343


>gi|221068171|ref|ZP_03544276.1| putative phytochrome sensor protein [Comamonas testosteroni KF-1]
 gi|220713194|gb|EED68562.1| putative phytochrome sensor protein [Comamonas testosteroni KF-1]
          Length = 871

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 58/354 (16%), Positives = 122/354 (34%), Gaps = 26/354 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           + E +   + ++  MI  I++++LYF +    P+  A++ GF   P  S    K+     
Sbjct: 79  LAEMLPALRLLIGLMIASIVILALYFGRDLLIPLALAMLFGFLLDPAVSRL--KRWGLPR 136

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP----GG 116
             + I  V+     +  L       + ++   +       +  +   R  +++P    G 
Sbjct: 137 MASAIVVVAFALAALGGLGMYLGSQVQQLSADLPTYQSTIRDKLRSLRKSANMPSAWDGV 196

Query: 117 MWASELWTKHLSHPQSLKILSETF--------LKTNGIDFIPRFASRFGMIFLDYCLSII 168
                   K ++   S +   +            T  + ++ R A       +     I+
Sbjct: 197 FKTYNTVEKEIASVDSARARVQKVEVQTPDSKPTTRMLQWLGRIAEPVTTAGIVLLFVIL 256

Query: 169 FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLV 228
            ++        D      +L     +L      + S+ + K +R  F    I+ +  G+ 
Sbjct: 257 ILLDRD-----DLRDRLLRLVGGNLNLATDALDEASQRIGKYLRMQF----IVNVSYGVP 307

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGA 286
           L     L GVP  +  GV+ AIM  +P   P+  +   +++   +               
Sbjct: 308 LAMGLLLIGVPGAILWGVLGAIMRFVPYVGPMMSAVFPLALAFAVDPGWNMFLLTLGLIL 367

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIA 339
           +   I +  + P+L G    L  L             G +GL +  P+ + L+ 
Sbjct: 368 LLELISNNVIEPWLYGSSTGLSTLSIIVAATFWTALWGPIGLILSTPLTVCLLV 421


>gi|194333691|ref|YP_002015551.1| hypothetical protein Paes_0858 [Prosthecochloris aestuarii DSM 271]
 gi|194311509|gb|ACF45904.1| protein of unknown function UPF0118 [Prosthecochloris aestuarii DSM
           271]
          Length = 402

 Score = 65.2 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 54/362 (14%), Positives = 122/362 (33%), Gaps = 15/362 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           + + + + Q + R      IL  ++    L G   P + AL++ F   P+ +  + +   
Sbjct: 42  LIQPLRDNQFVERLFWGLNILFGIWLFSELSGLLTPFIIALVLAFLFEPLMNGLL-RLNM 100

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                A + TV  +   ++ +  L      +M    S V L   +      W+       
Sbjct: 101 PRLLSAFLITVFGVGGIVLMVALLSPEIGRQMTAFGSIVPLIPDYLQAFINWIFSFEIFT 160

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
           W S        H           +     +F          +       I+      F+F
Sbjct: 161 WFSIDVDAVKQHIIQSINEQLDNIGMLASNFTQTLWKSIPKVITTITTIILL-PFLTFWF 219

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             D    S  +  +         ++   +   ++     G  I+ I E  +  + + + G
Sbjct: 220 LNDFNRFSDAMARMLNKKPALSIRRYVPMAKDILNQYIRGQLIVMIIEITLYSTFFSIIG 279

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGN------IFNATCLFLWGAIELFI 291
           +   + LG+++     +P     +  A++  ++  G+      ++         A+E+  
Sbjct: 280 INYSLLLGILSGAALWLPYIGISTAIALTSLVISLGSNPMEQFVWAGLTYLSIQALEIL- 338

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
               + P +VGG ++L  +  F  +       G+ G+ I   + A I  + +E +   K 
Sbjct: 339 ---FMVPKIVGGKVQLNPIILFLSIFTFGYFFGIGGILISIPVSAFIIALVREKLYQEKS 395

Query: 352 NK 353
            +
Sbjct: 396 ER 397


>gi|229136256|ref|ZP_04265004.1| hypothetical protein bcere0014_51260 [Bacillus cereus BDRD-ST196]
 gi|229170140|ref|ZP_04297828.1| hypothetical protein bcere0007_50740 [Bacillus cereus AH621]
 gi|228613317|gb|EEK70454.1| hypothetical protein bcere0007_50740 [Bacillus cereus AH621]
 gi|228647194|gb|EEL03281.1| hypothetical protein bcere0014_51260 [Bacillus cereus BDRD-ST196]
          Length = 344

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 96/279 (34%), Gaps = 8/279 (2%)

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           ++    Y ML     ++         I + + +      +              ++  + 
Sbjct: 66  IIIALLYVMLVAGIAITLFKYLPVLTIQISQLIYQFNVFLRNPPDSELIKYAVNAVNHME 125

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            +     G+D + +  +  G   L   LS+I  +    FF  +   I        E    
Sbjct: 126 LSKYVGQGVDILYKSITNVGKFGLQVLLSVILSL----FFLLEKARIVAFTSKFKESRLA 181

Query: 198 AYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            ++ +I     K  RS         +IAI   ++   A W+ G P  + L ++  ++ +I
Sbjct: 182 IFYNEIEYFGKKFARSFGKVIEAQFLIAIVNCVLSVIALWILGFPQLLGLALMIFLLGLI 241

Query: 255 PG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P  G  IS   + +     G I     + +   +   +    L P  +     LP   TF
Sbjct: 242 PVAGVIISLFPLCMIAYNIGGIMYVVYIVVIVTVIHALESYVLNPKFMSQKTNLPIFYTF 301

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             L+     +G+ GL IG  +   +  +   +   ++++
Sbjct: 302 MILIFSEHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 340


>gi|29653987|ref|NP_819679.1| riboflavin transporter [Coxiella burnetii RSA 493]
 gi|154706622|ref|YP_001424066.1| riboflavin transporter [Coxiella burnetii Dugway 5J108-111]
 gi|161831036|ref|YP_001596575.1| hypothetical protein COXBURSA331_A0764 [Coxiella burnetii RSA 331]
 gi|29541250|gb|AAO90193.1| riboflavin transporter [Coxiella burnetii RSA 493]
 gi|154355908|gb|ABS77370.1| riboflavin transporter [Coxiella burnetii Dugway 5J108-111]
 gi|161762903|gb|ABX78545.1| putative membrane protein [Coxiella burnetii RSA 331]
          Length = 363

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 60/342 (17%), Positives = 121/342 (35%), Gaps = 34/342 (9%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F   +  PV+ ++++ +            +     + AV             +++LF+ G
Sbjct: 41  FFGKYLLPVVISVVLAYLFASPVRWLERWRFPH--WAAVT------------IVYLFFLG 86

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +  +       ++  Q    +   + + P  +   + W     H       ++     N 
Sbjct: 87  IFLLALFGLLPLMWKQ----LASMVHEFPKAITKGQAWMTEYMHRYPKLFPTDPI--ANL 140

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMII-----------ALFFFYRDGFSISQQLDSLGEH 194
             ++ + ++R G   L + L+ I  II            +FFF +DG SIS  L      
Sbjct: 141 AGYLHQQSARIGQFILSFSLASIPGIIEAILYLVLVPLLVFFFLKDGGSISNWLSRFLPE 200

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 + +   + + I +   G  I  I   +V   A+ L G+     LGV+  +  ++
Sbjct: 201 RQGL-IRIVWHEMNQKIGAYVRGRVIEIIIVSIVAVIAFALLGLQYAFLLGVLLGLSVIV 259

Query: 255 P-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P  GA +    ++I  L++ G   +   L +  AI + +    L P L    + L  +  
Sbjct: 260 PYIGAIVVTIPIAIVGLMQWGLSAHFAYLMIVYAIIITLDGNLLVPLLFSEAMDLHPIVI 319

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
              ++      G  G+F    L  L+  +      A     E
Sbjct: 320 ILSVLVFGGIWGFWGIFFAIPLATLVKTVLNAWPKARISQNE 361


>gi|186681974|ref|YP_001865170.1| hypothetical protein Npun_F1538 [Nostoc punctiforme PCC 73102]
 gi|186464426|gb|ACC80227.1| protein of unknown function UPF0118 [Nostoc punctiforme PCC 73102]
          Length = 388

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 79/207 (38%), Gaps = 4/207 (1%)

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  I        ++ +   L I+  ++  F+  + G  + + L       F A + +  R
Sbjct: 153 LQAIAGQVLNLAVVTVTSLLDILLTMVLTFYLLQHGSELWESLVEWLPSKFRAPFSQTVR 212

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
           +     ++ F+   I++      L   +    VP  +  G+   +MA++P G      A+
Sbjct: 213 L---SFQNFFITQLILSTCMASALIPTFLWLKVPFGLLFGLTIGLMALVPFGGS-VGIAL 268

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +  L+   +      + +   I   I++  + P ++G    L  +     ++ G R  GL
Sbjct: 269 TTLLVALQDFSMGVRVLIAAVIVQQILENLIAPRILGSFTGLNPVWILISVLTGARIGGL 328

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKEN 352
           LG+ +      +I        +A + N
Sbjct: 329 LGVIVAVPTAVVIKTALSALRLAGETN 355


>gi|326563701|gb|EGE13952.1| hypothetical protein E9M_02143 [Moraxella catarrhalis 46P47B1]
          Length = 369

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 55/338 (16%), Positives = 119/338 (35%), Gaps = 9/338 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV-IAT 67
           + +     + + L +L+ +K    P ++A I+ +   P+ S              V I+ 
Sbjct: 11  RRLFILAALCLFLYALFLMKTVITPFVAAFILAYFLNPLVSRLALIMPRILAVSVVYISC 70

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             VM   I+ L+ + +  M  + E +  ++           W++                
Sbjct: 71  FVVMGALIIWLVPMVWAQMQILWESLPHIITWYNDTGR--AWIARYTNSELLP---LDID 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +     +   + N +  + +     G+   +    I+ + I  F+F          
Sbjct: 126 LISNTALDYFQNNYQVNDVQGLIKQVFSSGISAANNIGLIVMVPILTFYFLLGWDQRLYA 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                   +     +I+R     + +   G  ++ +  G +      L G+   + +G+ 
Sbjct: 186 WKLSIPKPYTNKVVRIARDCDTALMNFAKGQFLVMLLLGAIYAIQLQLIGLQLGLIIGIT 245

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--DKTLRPFLVGGP 304
             I + +P  G  I   A  I  L +  +       ++GA  +  V     L+P L+G  
Sbjct: 246 AGIASFVPYLGFGIGIIAALIAGLFQFGLDWIYLGLIFGAFMIGQVVEGYILQPLLLGDK 305

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           I L  L   F ++ G    G +G+ I   + A+I V++
Sbjct: 306 IGLSPLWVIFSVLAGASLFGFVGMLIALPVSAVINVLF 343


>gi|156743476|ref|YP_001433605.1| hypothetical protein Rcas_3538 [Roseiflexus castenholzii DSM 13941]
 gi|156234804|gb|ABU59587.1| protein of unknown function UPF0118 [Roseiflexus castenholzii DSM
           13941]
          Length = 406

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 94/277 (33%), Gaps = 9/277 (3%)

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + LF + L+ +  +     ++L +    A      V RW+  +  G+          
Sbjct: 87  LIYLALFAILLVVILSFVPTITQQLTTLTGSAPTTVESVVRWIGRLEEGLQRFGFRGDLT 146

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +  Q   I  +    T     + + +            +I  ++I  F+   DG  I + 
Sbjct: 147 AIVQPEAITRQL---TGIGSAMLQQSLGIAGSIATVLFNIFLVLILSFYITLDGPRIGKS 203

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L    +      +  +V +V         + ++  G+       L G+       VI
Sbjct: 204 FIMLLPRSWHDEMDGLFAVVDRVFGGFMRAQFVNSLLYGIANAIVMALFGLSDIALASVI 263

Query: 248 TAIMAMIP-GGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            AI+  IP  G   +    +++  L +   +     + L      F     + P LVG  
Sbjct: 264 AAILVFIPLVGGFFALIPPALFAILFVPDRVGWLVLVLLAVQQVQF---NVIMPRLVGQA 320

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           I L  L  F  L+ G    G  G+  G  +  +IA I
Sbjct: 321 IGLHPLLVFAALLLGGTVAGGWGVLFGIPVAGVIASI 357


>gi|163943119|ref|YP_001648003.1| hypothetical protein BcerKBAB4_5231 [Bacillus weihenstephanensis
           KBAB4]
 gi|163865316|gb|ABY46375.1| protein of unknown function UPF0118 [Bacillus weihenstephanensis
           KBAB4]
          Length = 344

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 96/279 (34%), Gaps = 8/279 (2%)

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           ++    Y ML     ++         I + + +      +              ++  + 
Sbjct: 66  IIIALLYVMLVAAIAITLFKYLPVLTIQISQLIYQFNVFLRNPPDSELIKYAVNAVNHME 125

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            +     G+D + +  +  G   L   LS+I  +    FF  +   I        E    
Sbjct: 126 LSKYVGQGVDILYKSITNVGKFGLQVLLSVILSL----FFLLEKARIVAFTSKFKESRLA 181

Query: 198 AYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            ++ +I     K  RS         +IAI   ++   A W+ G P  + L ++  ++ +I
Sbjct: 182 IFYNEIEYFGKKFARSFGKVIEAQFLIAIVNCVLSVIALWILGFPQLLGLALMIFLLGLI 241

Query: 255 PG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P  G  IS   + +     G I     + +   +   +    L P  +     LP   TF
Sbjct: 242 PVAGVIISLFPLCMIAYNIGGIMYVVYIVVIVTVIHALESYVLNPKFMSQKTNLPIFYTF 301

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             L+     +G+ GL IG  +   +  +   +   ++++
Sbjct: 302 MILIFSEHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 340


>gi|326567508|gb|EGE17623.1| hypothetical protein E9Q_06383 [Moraxella catarrhalis BC1]
 gi|326576643|gb|EGE26550.1| hypothetical protein E9Y_01525 [Moraxella catarrhalis 101P30B1]
 gi|326577488|gb|EGE27368.1| hypothetical protein EA1_02853 [Moraxella catarrhalis O35E]
          Length = 369

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 55/338 (16%), Positives = 119/338 (35%), Gaps = 9/338 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV-IAT 67
           + +     + + L +L+ +K    P ++A I+ +   P+ S              V I+ 
Sbjct: 11  RRLFILAALCLFLYALFLMKTVITPFVAAFILAYFLNPLVSRLALIMPRILAVSVVYISC 70

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             VM   I+ L+ + +  M  + E +  ++           W++                
Sbjct: 71  FVVMGALIIWLVPMVWAQMQILWESLPHIITWYNDTGR--AWIARYTNSELLP---LDID 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +     +   + N +  + +     G+   +    I+ + I  F+F          
Sbjct: 126 LISNTALDYFQNNYQVNDVQGLIKQVFSSGISAANNIGLIVMVPILTFYFLLGWDQRLYT 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                   +     +I+R     + +   G  ++ +  G +      L G+   + +G+ 
Sbjct: 186 WKLSIPKPYTNKVVRIARDCDTALMNFAKGQFLVMLLLGAIYAIQLQLIGLQLGLIIGIT 245

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--DKTLRPFLVGGP 304
             I + +P  G  I   A  I  L +  +       ++GA  +  V     L+P L+G  
Sbjct: 246 AGIASFVPYLGFGIGIIAALIAGLFQFGLDWIYLGLIFGAFMIGQVVEGYILQPLLLGDK 305

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           I L  L   F ++ G    G +G+ I   + A+I V++
Sbjct: 306 IGLSPLWVIFSVLAGASLFGFVGMLIALPVSAVINVLF 343


>gi|323342143|ref|ZP_08082376.1| hypothetical protein HMPREF0357_10556 [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322464568|gb|EFY09761.1| hypothetical protein HMPREF0357_10556 [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 364

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 97/301 (32%), Gaps = 13/301 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P +    + +   PI + F  K          I  V  + L ++    +      ++ 
Sbjct: 51  LLPFVIGFALAYIVRPI-AVFFEKYNIKRAISVPITLVLFVVLIVLLFSSILPSLYTDIS 109

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           +L+   +   Q      + ++      WA +++ + +     +     T L      F+ 
Sbjct: 110 QLIGNSMDGIQQLYNYYKEINHNNPSPWADDIFKQVMGMLNGIVGQIPT-LPAAASQFLS 168

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
           +  S        + + +        +F  D  + +  +  +  ++ P     I  ++   
Sbjct: 169 KIFSTITTGIFSFIIGM--------YFVFDYENFTGSVLRIANNISPKLGNSII-VIDHA 219

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           +      + +I     +     Y   G      LGV+TA   +IP   P     + I   
Sbjct: 220 VSRYLGTLVVIMTITCIEYSLLYLAVGHNYAFVLGVLTAFGLLIPYIGPTVVHVLGILTA 279

Query: 271 IKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           +   +     L + G + L  VD   + P +     K+  L + F         G +G+ 
Sbjct: 280 LTLPLPRVIILTI-GLVILSNVDGYVVSPMVYSKRDKIEPLWSLFAFFASSVLFGFVGIL 338

Query: 330 I 330
           I
Sbjct: 339 I 339


>gi|239628723|ref|ZP_04671754.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518869|gb|EEQ58735.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 353

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/343 (15%), Positives = 104/343 (30%), Gaps = 21/343 (6%)

Query: 11  IMRWMIMFIILVSLYFLK----GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           I+ ++   II V  Y L         P + AL I     P  S   S+ +      A   
Sbjct: 10  IISFIYFAIIGVICYILFKRLIPMLMPFIMALAIAAVLDPAVSFLGSRMKGGQKCAAAAV 69

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK- 125
            +            LF    +    L S +    +    +   + + PG      L    
Sbjct: 70  LLLF-------YGCLFSLAAVSGNWLFSCIQEQGRKLPALYSEVVE-PGLSRFFTLLEAS 121

Query: 126 ------HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                 H+S   +    +           +  + +   + F    + I+  +IA FF   
Sbjct: 122 FPGHSIHISSLGTSLEHAMENAAGALSSSLIGYGASVLVGFPSLLVDILAAVIASFFLTG 181

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
                   L         A        +  V         ++       L   + + GVP
Sbjct: 182 SYRQTVAFLMRQIPEKQRAILTVACASIRDVTGRLVKAYALLMALTFAELSVGFLILGVP 241

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
                  +  ++ ++P  G        +      G+      L     + + +V ++L P
Sbjct: 242 MGFTAACLITLVDILPVLGTGTVLLPWAFIAWTTGSRSLGIGLVCLY-LLITVVRQSLEP 300

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            +VG  + LP       +  G + +GL G+F+ P+   ++  +
Sbjct: 301 KVVGLQMGLPPAAALLCMFVGGKVLGLPGIFLFPIGATVLFKL 343


>gi|218903075|ref|YP_002450909.1| hypothetical protein BCAH820_1958 [Bacillus cereus AH820]
 gi|218539607|gb|ACK92005.1| putative membrane protein [Bacillus cereus AH820]
          Length = 337

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 57/341 (16%), Positives = 122/341 (35%), Gaps = 25/341 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +G  R++++ I+ + LY LK     +L   I+ F           K + +   +    
Sbjct: 9   RSRGFQRFLVLIILALVLYGLKSMINLILITFILTFLMDRFQRFLSKKLKVNRKIVIACL 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++      L        +++ +L+ +  L  Q+           P      +     
Sbjct: 69  YIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQN-----------PPDNEIIKYALST 117

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           ++  +  K + +      G+D I +  +  G + L   LS+I  +  L     +   I  
Sbjct: 118 INGMEVSKYIEQ------GVDVIYQSIANIGKVSLQILLSLILSLFFL----LEKERIIT 167

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 E     ++++I+    +  RS         +IA+   ++   A  + G P  + 
Sbjct: 168 FTSKFKESKLKIFYEEIAYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLLV 227

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L V+  ++ +IP  G  IS   + I     G +     + ++  +   +    L P  + 
Sbjct: 228 LAVMIFLLGLIPVAGVIISLFPLCIIAYNVGGVIYVVYILVFITVIHALESYFLNPKFMS 287

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               LP   TF  L+     +G+ GL IG  +   +  +  
Sbjct: 288 AKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLD 328


>gi|259502008|ref|ZP_05744910.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
 gi|259170009|gb|EEW54504.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
          Length = 347

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/352 (13%), Positives = 109/352 (30%), Gaps = 24/352 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           + R+ ++ +I+ +L+ ++     +L   I+ +    + +     +         +  +  
Sbjct: 14  VRRFAVLAVIVFALWMMRSMMNMILFTFILTYI---VVNWVHLVRRWLPKLSPAVVVIIT 70

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             L I+ L F                    Q+   + R +  +   +          +  
Sbjct: 71  YALLILLLYFGIT-----------------QYLPVLVRQIIKMVNSVLKFYSTNDATNFY 113

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           Q +     T      +      A            + +  +I  FF+  +   +      
Sbjct: 114 QYVNHYVSTGTIMTQLRHGLTIAVSTITSVGIVAFTFLLSLILSFFYTLELPQMESFSRL 173

Query: 191 LGEHLFPAYWKKIS---RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
             E  F  +++ ++   +               IAI   ++     +   +P   AL ++
Sbjct: 174 FLESKFAWFFQDVAYFGKKFTNTFGVVLEAQFFIAICNTVITTICLFFMKMPQIFALALV 233

Query: 248 TAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + +++P  G  IS   +SI     G I +   + +   +        L P  +     
Sbjct: 234 VFVFSLVPVAGVIISTIPLSIVAYSVGGIRDVIYIIIMVIVIHAFEAYVLNPKFMSSQTD 293

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           LP   TF  L+ G    G  GL +G  +   +  I     +     K   SS
Sbjct: 294 LPIFYTFIVLLIGEHFWGTWGLIVGVPIFTFLLDILGVKSIHKTNRKRPQSS 345


>gi|218680915|ref|ZP_03528812.1| hypothetical protein RetlC8_19536 [Rhizobium etli CIAT 894]
          Length = 140

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 36/101 (35%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I      S   +  F   V+ + I+    +P++              A I  V+ + L 
Sbjct: 33  IIALFAYWSFRLVAPFALIVIWSAILAIAMFPLHRMLARALGNRPVLSATIIVVACLLLV 92

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
           I PL  +        + L++++   +      P+ + + P 
Sbjct: 93  IAPLSLVAVNFADAAQALIARLRTDSFALPSAPQGIREWPV 133


>gi|213582219|ref|ZP_03364045.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 328

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/315 (14%), Positives = 107/315 (33%), Gaps = 22/315 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +IL  + F      P + AL I     P+      +          +  V ++ L ++
Sbjct: 4   LVVILSGIRFAADIIVPFILALFIAVVLNPVVQRMT-RCRIPRVIAVSLLIVIIVMLMVL 62

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L +L                  N+    +P++ S +   +   E W +      S+  L
Sbjct: 63  LLAYLGTSL--------------NELARTLPQYRSSLVIPLQRIEPWLQRAGIGVSVDEL 108

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           ++       +  +    ++          SI  +++ + F   +   + ++L  +     
Sbjct: 109 AKYIDPNAAMTLVTNLLTQLSNAMS----SIFLLLLTVVFMLLEVPQLPEKLQQMMSR-- 162

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
           P       +     +    +  T I+I  GLV         V      G++   +  IP 
Sbjct: 163 PVEGMAAIQRALDSVSHYLVLKTAISIVTGLVAWGMLAALDVRFAFVWGLLAFALNYIPN 222

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ ++     I +L+    ++A  +     +   +    L P ++G  + L  L  F  
Sbjct: 223 IGSVLAALPPIIQVLVFNGFYDALLVLAGYLLINLVFGNILEPRIMGRGLGLSTLVVFLS 282

Query: 316 LVGGVRTMGLLGLFI 330
           L+     +G +G+ +
Sbjct: 283 LIFWGWLLGPVGMLL 297


>gi|205352809|ref|YP_002226610.1| transport protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205272590|emb|CAR37497.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326627879|gb|EGE34222.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 344

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/328 (14%), Positives = 115/328 (35%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ +IL  + F      P + AL I     P+       +        
Sbjct: 7   TLNGLKIVIMLGMLVVILSGIRFAADIIVPFILALFIAVVLNPVVQRMTRCRIPR----- 61

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           VIA   ++ + ++ ++ L  Y    + EL             +P++ S +   +   E W
Sbjct: 62  VIAVSLIIVIIVMLMVLLLAYLGTSLNELAR----------TLPQYRSSLVIPLQRIEPW 111

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +      S+  L++       +  +    ++          SI  +++ + F   +   
Sbjct: 112 LQRAGIGVSVDELAKYIDPNAAMTLVTNLLTQLSNAMS----SIFLLLLTVVFMLLEVPQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + ++L  +     P       +     +    +  T I+I  GLV         V     
Sbjct: 168 LPEKLQQMMSR--PVEGMAAIQRALDSVSHYLVLKTAISIVTGLVAWGMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++     I +L+    ++A  +     +   +    L P ++ 
Sbjct: 226 WGLLAFALNYIPNIGSVLAALPPIIQVLVFNGFYDALLVLAGYLLINLVFGNILEPRIMR 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|110833634|ref|YP_692493.1| permease PerM [Alcanivorax borkumensis SK2]
 gi|110646745|emb|CAL16221.1| permease PerM [Alcanivorax borkumensis SK2]
          Length = 364

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/340 (15%), Positives = 122/340 (35%), Gaps = 15/340 (4%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           + F  G  APV +A+++ +    +  +   +             ++V  +F++ +  L  
Sbjct: 33  IAFFGGMLAPVFTAMVVAYLMQGLVGALERRGVRR--------MLAVNLVFVLFVGLLTA 84

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDI-PGGMWASELWTKHLSHPQSLKILSETFLK 142
             ++ +  +  ++VL  Q  +P      +I   G+ A       +    S+  + +  + 
Sbjct: 85  TLVVLLPMVWRQLVLLVQDQLPHMLKNGEIWLRGLPAHYPEVISMDQVNSIVAVIQREVA 144

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
             G   +    +      ++  + ++ + + +FFF +D  ++   +              
Sbjct: 145 EAGQGVLTLSLASI-PNLVEIMVFLVLVPLLVFFFLKDRETLVNWMLGFLPR-KRRILSH 202

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
           +   +   I +   G  I  +  G     A+ L  +   V L V+  +  ++P  GA + 
Sbjct: 203 VWHEMDGQIANYVRGKAIEILLVGGSTFIAFILLDMNYAVLLAVLVGLSVVVPYIGATVV 262

Query: 262 FTAVSIYLLIKGNIFN--ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
              V+    ++       A  + ++G I  FI    L P L    + L  +     ++  
Sbjct: 263 TLPVAAVAYVQFGWGGDFALVMIVYG-IIQFIDGNILVPLLFSEAVNLHPVAIITAILLF 321

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
               GL G+F    L  LI  +          +  K++S 
Sbjct: 322 GGLWGLWGVFFAIPLATLIKAVINAWPRQADYSPGKLASQ 361


>gi|213580402|ref|ZP_03362228.1| permease PerM [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 194

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 61/185 (32%), Gaps = 3/185 (1%)

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
             + ++ + + +FF  +D   +   +  +          ++   + + I +   G  +  
Sbjct: 1   MAVYLVLVPLMVFFLVKDKEQMLNAVRRVLPRNRGLAG-QVWNEMNQQITNYIRGKVLEM 59

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATC 280
           +  G+     + L G+   + L V+     +IP  GA +    V  + L   G       
Sbjct: 60  VVVGVATWLGFLLFGLNYSLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGLGTEFWS 119

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            F    I   +    L P L    + L  L     +V      G  G+F    L  LI  
Sbjct: 120 CFAVYLIIQALDGNLLVPVLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKA 179

Query: 341 IWKES 345
           +    
Sbjct: 180 VVHAW 184


>gi|226359623|ref|YP_002777401.1| hypothetical protein ROP_02090 [Rhodococcus opacus B4]
 gi|226238108|dbj|BAH48456.1| hypothetical membrane protein [Rhodococcus opacus B4]
          Length = 388

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/319 (13%), Positives = 99/319 (31%), Gaps = 15/319 (4%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           +G    +  A  +     P  S  +               V    +    L       + 
Sbjct: 78  RGVLVLIAVAAFLAIGLEPAVSWLVRH-GFPRWAAVATVFVVAFAMLAGFLAAAIPPMVT 136

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           +   LV             P +L  +           + LS    L+      L      
Sbjct: 137 QGAALVHNA----------PDYLGHL----EQRYPVLQELSARFHLQDELRRALDAGNAP 182

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            +       G          + +++   +F  D   I   L  L  +        I   +
Sbjct: 183 MVLGGIVGAGKFVFSAISGTVIVVVLTAYFLADFGHIRASLYRLAPNSRRPRTILIGDEI 242

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
              +    LG  +I++   ++         VP  + L V+ A++ +IP         V  
Sbjct: 243 FAKVGGYVLGNLLISLITAVLTFVWLVAFDVPYPLLLAVLVAVLDLIPVVGSTLAGVVVA 302

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            + +  ++  +    ++        D  L P ++G  +K+P + T   ++ G   +G++G
Sbjct: 303 LVALTVSLPVSLATVVFFIALRLFEDYLLVPRIIGRTVKVPPMVTVVAVLIGGALLGIVG 362

Query: 328 LFIGPVLMALIAVIWKESI 346
             +   + A + ++ +E++
Sbjct: 363 ALLAIPVAAAVLLLARETV 381


>gi|87118946|ref|ZP_01074844.1| hypothetical protein MED121_11790 [Marinomonas sp. MED121]
 gi|86165337|gb|EAQ66604.1| hypothetical protein MED121_11790 [Marinomonas sp. MED121]
          Length = 354

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/348 (13%), Positives = 114/348 (32%), Gaps = 16/348 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + + ++  ++M   +  L FL    APVL A+++ F    + +    +   S     ++ 
Sbjct: 15  DEEAVVFLLLMITCIAVLVFLGNILAPVLIAIVLAFLLQGVVNKVE-RMGLSHLSSVLVV 73

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +S     +  +  +      +   L++            P+ L+D+   +    +    
Sbjct: 74  FLSFSAACVAFIGIMVPVIWKQAGRLLN----------DAPQMLADLDAVVKTFAVEHLE 123

Query: 127 LSHPQSLKILSETFLK--TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                S+  +         N   ++  F+       +   + ++ + + +FF  +D   I
Sbjct: 124 YVKQDSIDDVLGNMANELANVGQWVLSFSLSSIPSIMSLMIYMVLVPLVMFFLMKDQKQI 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
                +          + I++ +   I +   G  I  +  G+   + + + G+     L
Sbjct: 184 MVWFTAWLPSERRM-MRSIAQEMNDQIANYIRGKFIEMLVVGIATYAVFAVLGLRYAELL 242

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            +   +  +IP  GA      V +    + G       + +   +   +    L P L  
Sbjct: 243 ALFVGLSVLIPYIGAAAVTVPVVMVAFYQYGTDTMFVYVLVAYLVVQALDGNVLVPLLFS 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             + L  L     ++      G  G+F    L  L+  I        K
Sbjct: 303 EAVNLHPLAIIVAVLFFGGIWGFWGVFFAIPLATLVKAILNAWPSHTK 350


>gi|167648175|ref|YP_001685838.1| hypothetical protein Caul_4216 [Caulobacter sp. K31]
 gi|167350605|gb|ABZ73340.1| protein of unknown function UPF0118 [Caulobacter sp. K31]
          Length = 346

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 66/208 (31%)

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
              HLS                G  ++     +         +  I ++ A  +      
Sbjct: 110 LQSHLSTAPFGGAALAKLEDWRGFGWLVSLGPKLAADAAGGLVGTIIVLFAGLYLAYHPG 169

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           S       L         +++   + + +R   +G        G+  G    + GVPS  
Sbjct: 170 SYVGGALMLFPRPRRERARQVLDQIHRALRQWLMGQLCSMALVGVTTGVGLAIVGVPSAA 229

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           ALG+I  I   +P   P+      + + ++        + L   +   +    + P ++ 
Sbjct: 230 ALGLIAGIGQFVPVIGPMVAPLPGLLVALEAGPQTLLWVGLVYLVSAQLEANLITPLVLR 289

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +LP   T F ++     +G LG+  
Sbjct: 290 QLAQLPMAVTLFAVLAMGVLLGPLGVLF 317


>gi|255023950|ref|ZP_05295936.1| conserved integral membrane protein [Listeria monocytogenes FSL
           J1-208]
          Length = 319

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/336 (15%), Positives = 112/336 (33%), Gaps = 25/336 (7%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
              R ++  ++ + LY L+     +L   I  F    + +  + +       + ++    
Sbjct: 5   TARRVLVFVLLGIVLYLLRSMIDLILLTFIFAFLVTRLENVILKRVRVPRKLIVIVLYSL 64

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V     V ++      + ++ +LV  +V    +  P    +     G        K+L  
Sbjct: 65  VAIFLYVAIVHFLPILINQISQLVDSLVKLYNN--PSDNTIVKWIVGFLKESNIQKYLQ- 121

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                          G+DFI    S  G + L + L++I  +    FF  +   ++    
Sbjct: 122 --------------TGVDFIIASLSGIGSVGLSFFLALILSL----FFSLEKERVTSFTG 163

Query: 190 SLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
                     +K+     +              +IA+   ++   A +L   P  ++L +
Sbjct: 164 QFMTSKVGFIFKEAAFFGKKFVSTFGVVLEAQLMIALVNTIITTIALYLMDFPQLLSLSI 223

Query: 247 ITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +  ++ +IP    I     + +     G   +   + +   I   I    L P L+    
Sbjct: 224 MVFVLGLIPVAGVIISCIPLVLIAYSVGGFQDVVYILITVVIVHAIETYILNPKLMSSKT 283

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            LP   TF  L+      G+ GL +G  +   +  I
Sbjct: 284 NLPVFYTFIILIFSETFFGVWGLIVGIPVFVFLLDI 319


>gi|229545953|ref|ZP_04434678.1| permease [Enterococcus faecalis TX1322]
 gi|307273353|ref|ZP_07554598.1| hypothetical protein HMPREF9514_02118 [Enterococcus faecalis
           TX0855]
 gi|307277498|ref|ZP_07558590.1| hypothetical protein HMPREF9521_03091 [Enterococcus faecalis
           TX2134]
 gi|307279172|ref|ZP_07560230.1| hypothetical protein HMPREF9515_01491 [Enterococcus faecalis
           TX0860]
 gi|307288140|ref|ZP_07568150.1| hypothetical protein HMPREF9505_01546 [Enterococcus faecalis
           TX0109]
 gi|229308916|gb|EEN74903.1| permease [Enterococcus faecalis TX1322]
 gi|306500876|gb|EFM70194.1| hypothetical protein HMPREF9505_01546 [Enterococcus faecalis
           TX0109]
 gi|306504297|gb|EFM73509.1| hypothetical protein HMPREF9515_01491 [Enterococcus faecalis
           TX0860]
 gi|306505763|gb|EFM74941.1| hypothetical protein HMPREF9521_03091 [Enterococcus faecalis
           TX2134]
 gi|306509880|gb|EFM78905.1| hypothetical protein HMPREF9514_02118 [Enterococcus faecalis
           TX0855]
 gi|315027394|gb|EFT39326.1| hypothetical protein HMPREF9494_00882 [Enterococcus faecalis
           TX2137]
 gi|315145673|gb|EFT89689.1| hypothetical protein HMPREF9495_00632 [Enterococcus faecalis
           TX2141]
 gi|315150661|gb|EFT94677.1| hypothetical protein HMPREF9499_01336 [Enterococcus faecalis
           TX0012]
 gi|315153331|gb|EFT97347.1| hypothetical protein HMPREF9502_01369 [Enterococcus faecalis
           TX0031]
 gi|315157941|gb|EFU01958.1| hypothetical protein HMPREF9508_02076 [Enterococcus faecalis
           TX0312]
 gi|315160240|gb|EFU04257.1| hypothetical protein HMPREF9513_03217 [Enterococcus faecalis
           TX0645]
 gi|315164244|gb|EFU08261.1| hypothetical protein HMPREF9516_02188 [Enterococcus faecalis
           TX1302]
 gi|315166662|gb|EFU10679.1| hypothetical protein HMPREF9517_02690 [Enterococcus faecalis
           TX1341]
 gi|315170054|gb|EFU14071.1| hypothetical protein HMPREF9518_02288 [Enterococcus faecalis
           TX1342]
 gi|315174444|gb|EFU18461.1| hypothetical protein HMPREF9519_00612 [Enterococcus faecalis
           TX1346]
 gi|315575580|gb|EFU87771.1| hypothetical protein HMPREF9507_00751 [Enterococcus faecalis
           TX0309B]
          Length = 319

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/333 (13%), Positives = 106/333 (31%), Gaps = 23/333 (6%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
              +L   I  + +  +        +  +  + ++    V+ L  + +       + +  
Sbjct: 2   ITTILLTFIFTYLAVRLVHFVQRYMKIPTIVIVLLTYALVVFLIYLAITKYVPVLVNQTT 61

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           ++++ VV   Q        +                L +  S+               I 
Sbjct: 62  QMINSVVDFYQSPHTDTNQVLQFIDQYLEKSNLLSQLQNGASM---------------IL 106

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
           R+    G + L + +S I      FFF  +   ++       +  F  +++ I     K 
Sbjct: 107 RYIQDIGAVGLSFVMSFILS----FFFMIEKKQMADFSKLFLKSDFDWFFQDIYYFANKF 162

Query: 211 IRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAVS 266
           + +          IA+   ++   A  + G     +L ++  I++++P    I     +S
Sbjct: 163 VNTFGVVMEAQFFIAVVNTVITTLALAIIGFTQLPSLAIMIFILSLVPVAGVIISCIPLS 222

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
                +G + +   +     I        L P  +    +LP   TF  L+   R  G+ 
Sbjct: 223 FIAYSQGGLNDVIYILALITIVHLFESYVLNPKFMSSKTELPIFYTFVILLVSERLFGVW 282

Query: 327 GLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           GL +G  +      + K   +   +    +  N
Sbjct: 283 GLIVGIPVFTFFLDVLKVKPIRGLKRLPNVKKN 315


>gi|206577122|ref|YP_002236155.1| hypothetical protein KPK_0272 [Klebsiella pneumoniae 342]
 gi|206566180|gb|ACI07956.1| putative membrane protein [Klebsiella pneumoniae 342]
          Length = 349

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/321 (14%), Positives = 113/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + IIL  ++        +L AL       P+ + FI +      F   +   ++
Sbjct: 14  LLKLAALVIILAGIHAAADILVQLLLALFFAIVLNPLVTWFIRR-GVRRPFAITLVVTAM 72

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +    L  L       +  L        +  + +  +L  +                 
Sbjct: 73  LVMLTALLGVLAASLNDFVAMLPDFNRALTRKILQLQEYLPFL----------------- 115

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L I  E  L+    + +  +A+           SI+ +++ + F   +   +  +L  
Sbjct: 116 -NLHINPERMLRRMDSERLMTWATTLMTQLSGAMASIVLLVMTVIFMLFEVRHLPYKL-R 173

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   +I++  GL++       GV   +  GV+  +
Sbjct: 174 FALNNPRLHIAGLHRALKGVTHYLALKT-LISLWTGLIVWLGLLAMGVQFALMWGVLAFL 232

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  G+ IS     +  L+   I+    +     +   ++   + P ++G  + +  
Sbjct: 233 LNYVPNIGSAISAIPPMLQALLFSGIYECLLVGALFLVVHMVLGNMVEPRMMGHRLGMSA 292

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           L  F  L+     +G +G+ +
Sbjct: 293 LVVFLSLLVWGWLLGPVGMLL 313


>gi|182417575|ref|ZP_02948900.1| putative domain of unknown function [Clostridium butyricum 5521]
 gi|237669145|ref|ZP_04529129.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182378588|gb|EDT76116.1| putative domain of unknown function [Clostridium butyricum 5521]
 gi|237657493|gb|EEP55049.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 323

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/326 (14%), Positives = 117/326 (35%), Gaps = 25/326 (7%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +     +++   ++  + +K +F P +  LI+     P+Y  FI K +        +  
Sbjct: 9   KKIFSLILLLVFTVIVTFLIKYYFKPFMVILIMSIICMPVY-KFIIKLKVPEKLAGAVTL 67

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++V  L ++ ++++       ++++ S  +    + I       +I              
Sbjct: 68  ITVNVLLVLIIVYMGGEIYSILRKVYSSNIEIINNIIQNISSAVNI-------------- 113

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +   + ++         + + A   G   L Y        I  FF   D  S+   
Sbjct: 114 --DLNNLKIGKSVFSIINDTKLRQSAVSTGESILAY----FIANICTFFILVDKKSMLDV 167

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  L        +++       +I        I+ +   + +   +++  +P  + LG++
Sbjct: 168 IYRLFPEEIIKKFRRQKNNFVNMISI----QGILILISTIEIIFGFFILRIPKSLMLGLV 223

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             ++ ++P    I      I   I    +  +   +   I + IV + L    +G  + +
Sbjct: 224 CGLLDVLPYVGTIIVFIPIIIYNIIMKNYLISFGLICLYILVQIVREILEAKFIGNKLDI 283

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPV 333
             L  F  +  G +  G+LG+ +GP+
Sbjct: 284 HPLVIFISIYIGAKVFGILGILVGPM 309


>gi|254228523|ref|ZP_04921948.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|262392705|ref|YP_003284559.1| putative permease [Vibrio sp. Ex25]
 gi|151938905|gb|EDN57738.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|262336299|gb|ACY50094.1| putative permease protein [Vibrio sp. Ex25]
          Length = 356

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 58/344 (16%), Positives = 121/344 (35%), Gaps = 34/344 (9%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            LYF K    P++ +  I     P  +    K    +       TV V   F+V    + 
Sbjct: 25  GLYFAKPILLPIVLSTFISLLCSPFINYLEDKGLPRA------ITVVVTLSFLVGASIIG 78

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS------LKIL 136
              M E                P  +W S++P  +         ++   +      L I 
Sbjct: 79  LAAMSE----------------PAKQWWSELPSIVKNVSQEVSEVTQASADHLNTPLNIA 122

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           S+  +   G + +                  + ++  ++F    G S+ ++  S      
Sbjct: 123 SDMGMDEVGNNTVFSLVKTLATTTPTILTQAMIVLFMVYFMLNHGRSLFRKSVSYLHGFA 182

Query: 197 PAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++ + + K +      +T++  G GL +G+ +++ G+      G    +M   P
Sbjct: 183 KQRQAIELVKALQKDLSRYIGTITLVNAGLGLSVGAVFFVLGLEDPFLWGAFAGVMNFAP 242

Query: 256 GGAPI---SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
              P+          YL ++   F  T + ++  +   I  + + P L+G    L  L  
Sbjct: 243 YLGPVISMVSFGFVAYLQLESVSFMLTVVSIY-LLINLIESQFVTPTLLGKRFNLNPLVI 301

Query: 313 FFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKEK 355
           F  LV      G +GL IG P+L+ +  ++ +  +    +++ +
Sbjct: 302 FVWLVFWGWLWGGMGLLIGVPLLVCINILVERLELCQSTQSQPR 345


>gi|126667512|ref|ZP_01738483.1| predicted permease [Marinobacter sp. ELB17]
 gi|126628104|gb|EAZ98730.1| predicted permease [Marinobacter sp. ELB17]
          Length = 357

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/341 (13%), Positives = 114/341 (33%), Gaps = 12/341 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + + ++  +I+ +  + + +     AP +++LI+ F    + +  ++ K           
Sbjct: 15  DEEAVILGLILIVGTMFVIWFGAMLAPAIASLIVAFILQGLVTKMLAWKVPEP------- 67

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            ++++ +F++ L  L       M  + +++    +    +   L      +         
Sbjct: 68  -LAILIVFLLFLGILAGAIFGLMPLVWTQLSNLARETPRIIGELQSYLELLPERYPQLVS 126

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           L    ++     T +       +    S          +  + + I +FFF +D   +  
Sbjct: 127 LDAVATVYQQVSTEVGQATQWLVTASLSSI-PDLFALLIYAVLVPILVFFFLKDRDVLLG 185

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +  +      A  +KI   V     +   G  +  +  G      + + G+P    L +
Sbjct: 186 SIARMLPP-QRATMRKIWHEVNLQCANYVRGKALEILIVGTTTYITFKILGMPYAALLSL 244

Query: 247 ITAIMAMIP-GGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           +  +  +IP  GA +    V+I  L   G       + +   +   +    L P L    
Sbjct: 245 LVGLSVVIPYIGAAVVTVPVAIIGLFAFGWGSQFIWIMVAYGVIQALDGNVLVPVLFSEV 304

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             L  +     ++      GL G+F    L  ++  +    
Sbjct: 305 NNLHPVAIIVAVLFFGGIWGLWGVFFAIPLATMLKAVVAAW 345


>gi|311745918|ref|ZP_07719703.1| putative transport protein [Algoriphagus sp. PR1]
 gi|126576125|gb|EAZ80403.1| putative transport protein [Algoriphagus sp. PR1]
          Length = 403

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 67/163 (41%), Gaps = 2/163 (1%)

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +   +            +++     ++  +  +G  I+ +   ++      ++G+ + +
Sbjct: 201 KVKLSILKFFSEENQKEAEEVMSHTVELGLNFIVGRFILIVFLAIIYSIGLSISGIENAI 260

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATC-LFLWGAIELFIVDKTLRPFL 300
            + VI A+++++P  G  I +    I  +  G        + L   +  F+    L P++
Sbjct: 261 LISVIAAVLSLVPFIGNIIGYVLAIIMAVFAGAELGGIIGVSLTFGLAQFVESYILEPYV 320

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           VG  +++  L T   ++ G    G++G+ +   +  +  +I+ 
Sbjct: 321 VGSKVEVNPLVTIMVVILGGAIWGIIGMILSIPIAGIAKIIFD 363


>gi|120554613|ref|YP_958964.1| hypothetical protein Maqu_1693 [Marinobacter aquaeolei VT8]
 gi|120324462|gb|ABM18777.1| protein of unknown function UPF0118 [Marinobacter aquaeolei VT8]
          Length = 358

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 54/356 (15%), Positives = 120/356 (33%), Gaps = 16/356 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + + ++ ++++    V + +     AP +++LI+ F    + S            +AVI 
Sbjct: 15  DEEAVILFLLLVTGTVFIIWFGAMLAPAIASLIVAFILQGLVSKLNRM--GVPELIAVIG 72

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
              V    +V  +F     +             +      PR + ++   +        H
Sbjct: 73  VFVVFLGVLVGFIFGLLPLI---------WTQLSTLAGEAPRIIRELQSYLEVLPQQYPH 123

Query: 127 LSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           L   +S+  + +      G    ++  F+       +   + ++ + I +FFF +D   +
Sbjct: 124 LVSAESVNTMYQQISAEVGHLTQWLVSFSLSSIPDLVALLIYMVLVPILVFFFLKDRRVL 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
                 L     P    +I   V     +   G  +  +  G V   A+   G+P    L
Sbjct: 184 VNSFARLLPPQRPM-MVRIWHEVNLQCANYVRGKAVEILIVGGVTYVAFKFLGMPYAALL 242

Query: 245 GVITAIMAMIP-GGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            ++  +  +IP  GA +    V++  L   G   +   + +   I   +    L P L  
Sbjct: 243 SLLVGLSVVIPYIGAAVVTIPVAVIGLFAFGWGSHFIWVMVIYGIIQALDGNVLVPILFS 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
               L  +     ++      GL G+F    L  ++  ++    +        I+ 
Sbjct: 303 EVNNLHPVAIIVAVLFFGGIWGLWGVFFAIPLATMLKAVFAAWPVKESPPPPAIAE 358


>gi|310640166|ref|YP_003944924.1| transport protein [Paenibacillus polymyxa SC2]
 gi|309245116|gb|ADO54683.1| Putative transport protein [Paenibacillus polymyxa SC2]
          Length = 335

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 76/217 (35%), Gaps = 4/217 (1%)

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                      F+ T  +  +        M        ++  II   FF  +   I++  
Sbjct: 108 DRNQWNETIIEFMDTLNVQRLFEPGWNAVMKISQLGTQLLVSIILSLFFLMEKSYITRFT 167

Query: 189 DSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            +  +     ++K+     R+             +I++   ++  +A W+ G P+ + L 
Sbjct: 168 ATFVDSKLGWFFKEVGHFGRMFLGTFGKVLEAQLLISLINCILTTTALWIMGFPNLLGLA 227

Query: 246 VITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           +I  ++ ++P  G  IS   + +     G I     L +   +   I    L P L+   
Sbjct: 228 LIIFLLGLVPVAGVFISLIPLGLIAFSVGGINYVIYLVILIVVIHAIEAYFLNPKLMSSK 287

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             LP   TF  L+     +G+ GL +G  L      +
Sbjct: 288 TNLPIFFTFVVLIFSEHLIGVWGLIVGIPLFVFFLDL 324


>gi|88704180|ref|ZP_01101894.1| permease PerM [Congregibacter litoralis KT71]
 gi|88701231|gb|EAQ98336.1| permease PerM [Congregibacter litoralis KT71]
          Length = 362

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/317 (16%), Positives = 112/317 (35%), Gaps = 12/317 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
            AP+L+++++ +    + +  + +          IA  + M  F   LL L      +  
Sbjct: 39  LAPLLASIVLAYLVQGVVN-LLCRLGLPPWLGFFIAFTAFMGAFFAVLLGLLPLVWRQSI 97

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L++++      G  +   L      +++     + L+  Q         + T  +  IP
Sbjct: 98  GLITEIPRMIDQGRDLLEVLPGRYPDVFSQTQIDQLLAGVQGEIAGLGQKVVTVTLARIP 157

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                    F+   + ++ + I +FF  +D   I++ + S      P    +I   +   
Sbjct: 158 --------GFMTLLVYVVLVPIIVFFLLKDRTQITRWVTSFLPERRPLL-SRIWAEMNVQ 208

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
             +   G  +  I  G     ++   G+     LG++  +  +IP  GA +    V+   
Sbjct: 209 FSNYARGKMVEIIIVGAASYVSFTGLGLRYAALLGLLVGLSVIIPYIGAFLITVPVAAVA 268

Query: 270 LIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L +  +       L   + + I+D   L P L    + L  +     ++      GL G+
Sbjct: 269 LFQWGLTPEFYWVLAVYLVIQILDGNVLVPLLFSEAVNLHPVAIIVAVLFFGGIWGLWGV 328

Query: 329 FIGPVLMALIAVIWKES 345
           F    L  LI  +    
Sbjct: 329 FFAIPLATLIKAVINAW 345


>gi|323484056|ref|ZP_08089426.1| sporulation integral membrane protein YtvI [Clostridium symbiosum
           WAL-14163]
 gi|323402498|gb|EGA94826.1| sporulation integral membrane protein YtvI [Clostridium symbiosum
           WAL-14163]
          Length = 372

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/353 (15%), Positives = 119/353 (33%), Gaps = 9/353 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++  M++ + +++   L  F+  +  + I+     PI      K       L+ I     
Sbjct: 19  LIAAMLVLLTILTAGLLMPFWIALFLSAIL----QPITRLLSGKLGLKKKGLSTIVLFLF 74

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             L    L+F          +L        +  I               S +  +     
Sbjct: 75  YLLLFCILIFGIAEVTNLFGDLFQSFPDYYKDTIVPALGSLGNSIEQIFSIIPNEFRPDM 134

Query: 131 QSLKILSETFLK---TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
             L+I   T+++   +    +   FA      F    LS++  I+  +F      ++   
Sbjct: 135 AELQISIMTWIEKIVSAISQYGLTFAGNVISGFTSSILSVLMTILLSYFITVQYDTVVAF 194

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L          +   I  ++   +        I+     + L     +    + + + + 
Sbjct: 195 LKCQLPDKIRTFGADIKPLLKNSVVKYLKATLILMFITFIELAVGLSIIKGSNPIGMALG 254

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            AI   +P  G         I  L+ GN   A  L +   I + I+   L P ++G  + 
Sbjct: 255 IAIFDALPVFGTGGIMIPWIIIELLSGNYALAGGLLI-LYIIITIMRNILEPKILGSQLG 313

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +  +     ++ G R +G+LG+   P+   ++ V+     + + +N  K+++ 
Sbjct: 314 INPIVVLLAVLIGGRLLGVLGMIFFPITAYVLTVLHDAGKIKLYKNPPKLNNQ 366


>gi|295098896|emb|CBK87985.1| Predicted permease [Eubacterium cylindroides T2-87]
          Length = 392

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/320 (11%), Positives = 98/320 (30%), Gaps = 19/320 (5%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYS------SFISKKEES--STFLAVIAT 67
           I+ ++L  L     F      A +    +  +            +K     +  L+++  
Sbjct: 35  ILQVLLYILSICMPFLFGGGLAFVFNIIANNLMRAGNILFKIEERKIYRVIANILSIVIV 94

Query: 68  VSVMCLFI---VPLLFLFYYGMLE-----MKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
           +++   F+   VP +F     ++      +          +     +  W+  +   +  
Sbjct: 95  LALFLGFVFLLVPQIFASLETIINNLPETLNSFYHWAYRTSSSIPSLHNWIQGLDLNVLD 154

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            +  +   +   +           N    + +  S    I L   ++++F II LF    
Sbjct: 155 FDNLSNWFNDFINWIFSGGA---NNIFGSVYQVISTTFSIVLSTFVALMFSIIVLFNKST 211

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
                   L +            + R++ +       G     I  G ++     L  +P
Sbjct: 212 VVKESKGLLRAYMPDDIYEKTLHVLRLIARTFTQYIGGTCTECIILGTLVTVGATLLNIP 271

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               +G+I  + A++P    +    +    +   ++ +A    +       +    + P 
Sbjct: 272 YATLVGIIVGVGALVPMFGALIAAIIGALFVATESVQSAVYFMIMFICIQQVEGNFIYPN 331

Query: 300 LVGGPIKLPFLPTFFGLVGG 319
           +VG  +  P +     +  G
Sbjct: 332 VVGRSVGFPPMYVIVAVTVG 351


>gi|312887141|ref|ZP_07746745.1| protein of unknown function UPF0118 [Mucilaginibacter paludis DSM
           18603]
 gi|311300453|gb|EFQ77518.1| protein of unknown function UPF0118 [Mucilaginibacter paludis DSM
           18603]
          Length = 362

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/317 (16%), Positives = 118/317 (37%), Gaps = 16/317 (5%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P+L A        PI+     K +   +    +  + ++    + +          + 
Sbjct: 38  IMPLLMAFFFSLMLMPIF-RLFRKLKIPESIAIFLPILLLIISLALVIWLFTSQVSALLD 96

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           +         +H   +  W+S+  G   A +L        + +   S+    + G     
Sbjct: 97  DFPQIQRTVTRHLDSLSIWISNSFGYSPAEQL--------KFINEQSKKLFSSLGGMLSG 148

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              S  G+I     L I   +I L+          + +            ++  R   K+
Sbjct: 149 AAGSLSGVIIFIGLLPIYIYLIILYRNL-----FLKFILMWFNANEHLNVEEGIRQTEKM 203

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS--FTAVSIY 268
           ++S  +G+ I      ++LG A W+ G+ + + +G+I A + +IP    +      V + 
Sbjct: 204 VKSYLIGLLIQITYIIILLGGALWILGIQNALLIGIIFAFLNLIPYLGALIGNILGVLLT 263

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L     I +   +        F+ +  L P +VG  +K+  L +  G++ G    GL G+
Sbjct: 264 LASSDKISDVLIVLGAITFVQFLDNNILMPRIVGSQVKINALVSIVGIIIGGVMAGLSGM 323

Query: 329 FIGPVLMALIAVIWKES 345
           F+   +++++ +++  S
Sbjct: 324 FLAMPIISILKIVFDRS 340


>gi|238791876|ref|ZP_04635513.1| AI-2 transport protein tqsA [Yersinia intermedia ATCC 29909]
 gi|238728980|gb|EEQ20497.1| AI-2 transport protein tqsA [Yersinia intermedia ATCC 29909]
          Length = 356

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/315 (15%), Positives = 109/315 (34%), Gaps = 22/315 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +I+  +        P L A+ +     P+    + K +   T   V+    ++ L  +
Sbjct: 29  LVVIMAGIKAASPIVVPFLLAIFLAIVLNPL-VKLLEKIKIPRTLAIVLLVTIIILLMAL 87

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
               L                  N+    +P++   +   M   + +    +   S+  +
Sbjct: 88  LFSRLGSSL--------------NEFARSLPQYRGMMLEKMRDLQEFAMRFNIEFSVDDI 133

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +    +  ++F+ R  S          L ++ ++  LF   R  + +    D+      
Sbjct: 134 MKHVDPSTAMNFVTRLLSHLSGAMASMFLLLMTVVFMLFEVERLPYKMQLMFDN------ 187

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
           P     I +     +    +  TII+I  G+V+       GV      G++  ++  IP 
Sbjct: 188 PEQGNAILKRALNGVTHYLVIKTIISIATGIVIWLFLAAMGVRFAFLWGLLAFVLNYIPN 247

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ ++     I  L+     +A  +     +   I    + P ++G  + L  L  F  
Sbjct: 248 IGSVLAAMPPIIQALLFNGFADAFAVTCGYILINLIGGNIIDPRMMGRGLGLSTLVVFLS 307

Query: 316 LVGGVRTMGLLGLFI 330
           L+     +G +G+ +
Sbjct: 308 LIFWGWLLGPIGMLL 322


>gi|187919985|ref|YP_001889016.1| hypothetical protein Bphyt_5287 [Burkholderia phytofirmans PsJN]
 gi|187718423|gb|ACD19646.1| protein of unknown function UPF0118 [Burkholderia phytofirmans
           PsJN]
          Length = 677

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/356 (13%), Positives = 114/356 (32%), Gaps = 31/356 (8%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++   +   ++  LYF      P+  A+++ F   P+ ++ +  +       +V A V 
Sbjct: 27  SLISLAVGVTVVACLYFASAVLIPITLAILLSFLVAPLANALMRLRLGH--VASVFAAVV 84

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +    I  L  +    + ++   + +     +  +     L+ I      +    + L  
Sbjct: 85  ISVSVIGMLGAVIATQLTDLAAGMPRYQATIEQKMETAHSLT-IGKLNRFASAAGQALQR 143

Query: 130 PQSLKILSETFLKTNGIDFIPRFASR-----------------FGMIFLDYCLSIIFMII 172
                            D     AS                       L   +S +    
Sbjct: 144 ATVEPPQPAPQRGPASRDSARSTASEPAAVPVEVREPVPTPFELARRVLSPAISPLETAF 203

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFP----AYWKKISRIVPKVIRSTFLGMTIIAIGEGLV 228
            +F            L      LF          +     + +   F+    +  G G++
Sbjct: 204 IVFVVMVVILLQRDDLRDRAIRLFGSRDLHRTTTVMDEAARRLSRYFVSQLGLNAGVGVI 263

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG-AI 287
           +G+  ++ GVPS +  G++ A++ ++P      + + ++   +   +     + +W  A+
Sbjct: 264 IGTGLFMIGVPSPILWGILAALLRLVPYVG--IWISATLATALAAAVSPGWTMAIWSLAL 321

Query: 288 ELF---IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIA 339
            +    +V + + P L G    L         +      G +GL +  P+ + L+ 
Sbjct: 322 FVSVEVLVGQIVEPLLYGRSTGLSPFSVVVAAIFWSWIWGPIGLILSTPLTLCLLV 377


>gi|284801280|ref|YP_003413145.1| hypothetical protein LM5578_1030 [Listeria monocytogenes 08-5578]
 gi|284994422|ref|YP_003416190.1| hypothetical protein LM5923_0984 [Listeria monocytogenes 08-5923]
 gi|284056842|gb|ADB67783.1| hypothetical protein LM5578_1030 [Listeria monocytogenes 08-5578]
 gi|284059889|gb|ADB70828.1| hypothetical protein LM5923_0984 [Listeria monocytogenes 08-5923]
          Length = 348

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 55/345 (15%), Positives = 114/345 (33%), Gaps = 25/345 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  ++ V LY L+     +L   I  F    + +  + +       +
Sbjct: 5   EKLKENDTARRVLVFVLLGVVLYLLRSMIDLILLTFIFAFLVTRLENVILKRVRVPRKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V     V ++      + ++ +LV  +V    +  P    +     G      
Sbjct: 65  VIVLYSLVAVFLYVVIVHFLPILINQISQLVDSLVKLYNN--PSDNTIVKWIVGFLKESN 122

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             K+L                 G+DFI    S  G + L + L++I  +    FF  +  
Sbjct: 123 IQKYLQ---------------AGVDFIIASLSGIGSVGLSFFLALILSL----FFSLEKE 163

Query: 183 SISQQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            ++              +K+     +              +IA+    +   A +L   P
Sbjct: 164 RVTSFTGQFMTSKVGFIFKEAAFFGKKFVSTFGVVLEAQLMIALVNTFITTIALYLMDFP 223

Query: 240 SHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             ++L ++  ++ +IP    I     + +     G   +   + +   I   I    L P
Sbjct: 224 QLLSLSIMVFVLGLIPVAGVIISCIPLVLIAYSVGGFQDVVYILITVVIVHAIETYILNP 283

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L+     LP   TF  L+      G+ GL +G  +   +  I +
Sbjct: 284 KLMSSKTNLPVFYTFIILIFSETFFGVWGLIVGIPVFVFLLDILE 328


>gi|16802989|ref|NP_464474.1| hypothetical protein lmo0949 [Listeria monocytogenes EGD-e]
 gi|47096236|ref|ZP_00233834.1| membrane protein, putative [Listeria monocytogenes str. 1/2a F6854]
 gi|254832306|ref|ZP_05236961.1| hypothetical protein Lmon1_13209 [Listeria monocytogenes 10403S]
 gi|254898878|ref|ZP_05258802.1| hypothetical protein LmonJ_03655 [Listeria monocytogenes J0161]
 gi|254911633|ref|ZP_05261645.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254935959|ref|ZP_05267656.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|16410351|emb|CAC99027.1| lmo0949 [Listeria monocytogenes EGD-e]
 gi|47015381|gb|EAL06316.1| membrane protein, putative [Listeria monocytogenes str. 1/2a F6854]
 gi|258608547|gb|EEW21155.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|293589582|gb|EFF97916.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 348

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 55/345 (15%), Positives = 114/345 (33%), Gaps = 25/345 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  ++ V LY L+     +L   I  F    + +  + +       +
Sbjct: 5   EKLKENDTARRVLVFVLLGVVLYLLRSMIDLILLTFIFAFLVTRLENVILKRVRVPRKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V     V ++      + ++ +LV  +V    +  P    +     G      
Sbjct: 65  VIVLYSLVAVFLYVAIVHFLPILINQISQLVDSLVKLYNN--PSDNTIVKWIVGFLKESN 122

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             K+L                 G+DFI    S  G + L + L++I  +    FF  +  
Sbjct: 123 IQKYLQ---------------AGVDFIIASLSGIGSVGLSFFLALILSL----FFSLEKE 163

Query: 183 SISQQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            ++              +K+     +              +IA+    +   A +L   P
Sbjct: 164 RVTSFTGQFMTSKVGFIFKEAAFFGKKFVSTFGVVLEAQLMIALVNTFITTIALYLMDFP 223

Query: 240 SHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             ++L ++  ++ +IP    I     + +     G   +   + +   I   I    L P
Sbjct: 224 QLLSLSIMVFVLGLIPVAGVIISCIPLVLIAYSVGGFQDVVYILITVVIVHAIETYILNP 283

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L+     LP   TF  L+      G+ GL +G  +   +  I +
Sbjct: 284 KLMSSKTNLPVFYTFIILIFSETFFGVWGLIVGIPVFVFLLDILE 328


>gi|254827894|ref|ZP_05232581.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|258600275|gb|EEW13600.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
          Length = 348

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 55/345 (15%), Positives = 114/345 (33%), Gaps = 25/345 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  ++ V LY L+     +L   I  F    + +  + +       +
Sbjct: 5   EKLKENDTARRVLVFVLLGVVLYLLRSMIDLILLTFIFAFLVTRLENVILKRVRVPRKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V     V ++      + ++ +LV  +V    +  P    +     G      
Sbjct: 65  VIVLYSLVAVFLYVAIVHFLPILINQISQLVDSLVKLYNN--PSDNTIVKWIVGFLKESN 122

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             K+L                 G+DFI    S  G + L + L++I  +    FF  +  
Sbjct: 123 IQKYLQ---------------AGVDFIIASLSGIGSVGLSFFLALILSL----FFSLEKE 163

Query: 183 SISQQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            ++              +K+     +              +IA+    +   A +L   P
Sbjct: 164 RVTSFTGQFMTSKVGFIFKEAAFFGKKFVSTFGVVLEAQLMIALVNTFITTIALYLMDFP 223

Query: 240 SHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             ++L ++  ++ +IP    I     + +     G   +   + +   I   I    L P
Sbjct: 224 QLLSLSIMVFVLGLIPVAGVIISCIPLVLIAYSVGGFQDVVYILITVVIVHAIETYILNP 283

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L+     LP   TF  L+      G+ GL +G  +   +  I +
Sbjct: 284 KLMSSKTNLPVFYTFIILIFSETFFGVWGLIVGIPVFVFLLDILE 328


>gi|172057436|ref|YP_001813896.1| hypothetical protein Exig_1411 [Exiguobacterium sibiricum 255-15]
 gi|171989957|gb|ACB60879.1| protein of unknown function UPF0118 [Exiguobacterium sibiricum
           255-15]
          Length = 290

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 63/207 (30%)

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            + S T L  N    I                ++   +    F   DG  +   L     
Sbjct: 53  SMKSATALLGNVFSSIAGSVIWLIQFIASTVFTLFIALFLYIFMLFDGKKLPNALVQFIP 112

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
             +      I + +   IRS      I+      +     W   VP  + LG+      +
Sbjct: 113 VGYRKEALLILKDMNGTIRSYVRAQLIVCSFVWSLATLVLWWLDVPYFLPLGLFIFATNI 172

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P    A ++ +           + +   I   +    + P + G  +K+  +   
Sbjct: 173 IPYLGPFLGAAPAVLIGFLDEPIKGLYVIIGITIVQQLDANVISPLVQGKSLKVHPITIT 232

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAV 340
             L+   +  G+LG+ +     AL  V
Sbjct: 233 VVLLVAGQLAGILGMLLAVPFYALAKV 259


>gi|326561048|gb|EGE11413.1| hypothetical protein E9G_04324 [Moraxella catarrhalis 7169]
          Length = 369

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 55/338 (16%), Positives = 119/338 (35%), Gaps = 9/338 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV-IAT 67
           + +     + + L +L+ +K    P ++A I+ +   P+ S              V I+ 
Sbjct: 11  RRLFILAALCLFLYALFLMKTVITPFVAAFILAYFLNPLVSRLALIMPRILAVSVVYISC 70

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             VM   I+ L+ + +  M  + E +  ++           W++                
Sbjct: 71  FVVMGALIIWLVPMVWAQMQILWESLPHIITWYNDTGR--AWIARYTDSELLP---LDID 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +     +   + N +  + +     G+   +    I+ + I  F+F          
Sbjct: 126 LISNTALDYFQNNYQVNDVQGLIKQVFSSGISAANNIGLIVMVPILTFYFLLGWDQRLYT 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                   +     +I+R     + +   G  ++ +  G +      L G+   + +G+ 
Sbjct: 186 WKLSIPKPYTNKVIRIARDCDTALMNFAKGQFLVMLLLGAIYAIQLQLIGLQLGLIIGIT 245

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--DKTLRPFLVGGP 304
             I + +P  G  I   A  I  L +  +       ++GA  +  V     L+P L+G  
Sbjct: 246 AGIASFVPYLGFGIGIIAALIAGLFQFGLDWIYLGLIFGAFMIGQVVEGYILQPLLLGDK 305

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           I L  L   F ++ G    G +G+ I   + A+I V++
Sbjct: 306 IGLSPLWVIFSVLAGASLFGFVGMLIALPVSAVINVLF 343


>gi|309804578|ref|ZP_07698643.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c]
 gi|308165970|gb|EFO68188.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c]
          Length = 181

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 72/176 (40%)

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
             +DG  I+  L S         + K+   +   + S   G  I+A   G++    Y   
Sbjct: 1   MLKDGKKINPYLTSFMPPRLQNVFSKLLHDMNIAVSSYVRGQLIVAFWVGVMFAVGYTTI 60

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           G+   + L ++ A + +IP    +     +I + I  +      +F+   IE  I  + +
Sbjct: 61  GLKYGLTLAILAACLNLIPYFGTLISLIPAIIIGILDSPVMLLKIFVVFFIEQLIEGRFI 120

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            P ++G  +K+  + T   L+G     GLLG+     + A I +I  +     ++N
Sbjct: 121 SPLVMGSKMKMNPVTTILLLIGANSVAGLLGVIFAIPIYAGIKIIVVQVFDYYRKN 176


>gi|118591666|ref|ZP_01549062.1| hypothetical protein SIAM614_22022 [Stappia aggregata IAM 12614]
 gi|118435659|gb|EAV42304.1| hypothetical protein SIAM614_22022 [Stappia aggregata IAM 12614]
          Length = 375

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 54/341 (15%), Positives = 118/341 (34%), Gaps = 33/341 (9%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            + +  +  +L   +  FAPV  ++++G    P              +L+    V +  +
Sbjct: 35  ILCVIAVTAALDIGQVIFAPVCLSIVVGTIFAPPVERLSRL--GVPGWLSAGGMVLLFIV 92

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP--GGMWASEL--WTKHLSH 129
           FI+     F                     +P+  WL  +P       ++L  W    S 
Sbjct: 93  FILTAGAAFV--------------------VPLSDWLDRLPLIWSRLQAQLISWQGFFSS 132

Query: 130 PQSLKILSETFLKTNGIDFIP----RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             SL+      +   G   +                 +   +I  + + +FF   G  + 
Sbjct: 133 VASLQEDLRNAVGQKGGMQVSVEDNSAVESVFYFAPAFVAQVILFLASFYFFLLTGPHLR 192

Query: 186 QQLDSLGEHLFPAY-WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           +    L              R +   + +  + +++I  G G  +  + WL GVPS +  
Sbjct: 193 RAALQLSSDGEGRRSIVTAFRTIETRLSTYLISISLINAGLGAAVALSMWLLGVPSPLLW 252

Query: 245 GVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVG 302
           G++  ++  ++  G  I    +S   L  GN   A        + L +++ + + P ++G
Sbjct: 253 GMMACVLNYVVYLGPAIMVLLMSAVGLATGNTPLAILTPPLTYLALNLIEAQFVTPTVLG 312

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             + L     F  +   +   G +G F+   L+ ++  + +
Sbjct: 313 RTMTLNPFLVFLAIAFWIWLWGPIGGFVAVPLLLVVGTVLE 353


>gi|103486275|ref|YP_615836.1| hypothetical protein Sala_0783 [Sphingopyxis alaskensis RB2256]
 gi|98976352|gb|ABF52503.1| protein of unknown function UPF0118 [Sphingopyxis alaskensis
           RB2256]
          Length = 365

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 105/313 (33%), Gaps = 22/313 (7%)

Query: 9   QGIMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  M  +I+  I    +    L  FF  V +A+++G     I S  + +          +
Sbjct: 29  RVAMAAVIVIAIAGVAWLAVSLTRFFMLVFAAVVLGAVFDAIASWLVRRARVGRGIALAL 88

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           +   ++ +F    +        E+  +  +V                 P  +   E +  
Sbjct: 89  SVAGIVAVFAGAFILFGSQLAREIDTIREQV-----------------PQALRGVEAFLD 131

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                  ++ L+E  + +  I  +   A  + +         + +++A  F   D  +  
Sbjct: 132 RYGLGARVRELAE--VGSEDISQLVSQAGGYALAAGSGIADFVLVLVAGIFLASDPATYR 189

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + L  L      A          + ++   +G  + ++    +  +   L GVP+   LG
Sbjct: 190 RGLLLLVPARAEATAALALDDAARGLKGWMIGQAVSSLVVAALTWAGLALLGVPAAGGLG 249

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +I  ++ +IP   PI     ++ L    +   A    +   +   +    L+P +    +
Sbjct: 250 LIAGLLDVIPMIGPIIAGIPAVLLAFTVSPMTALWTLILFLVIQQLQGNFLQPMIQKQAV 309

Query: 306 KLPFLPTFFGLVG 318
            +P     F +V 
Sbjct: 310 DVPPAVLLFAVVA 322


>gi|300867990|ref|ZP_07112629.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300334011|emb|CBN57807.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 402

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 83/238 (34%), Gaps = 10/238 (4%)

Query: 96  VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK--TNGIDFIPRFA 153
              A Q    +P W+      +   +     L  P +L              +  +   A
Sbjct: 108 FTQAQQLVARLPEWIDSGQRQLLIFDDRINALGLPINLDGFIAQINTRLKGELQLVAGRA 167

Query: 154 SRFGMIF----LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
               +      +   L ++  ++  F+       I + L       F   + +  R+   
Sbjct: 168 LNITLNLTVLTVVRLLDLLLTVVLTFYLLLHSSDIWESLIEWLPPRFQKPFSETLRL--- 224

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
             ++ F G  IIA      L SA+    VP  +  G+   +MA++P G  +    V+I +
Sbjct: 225 SFQNYFTGQLIIATCMAFGLTSAFIFLKVPFGLLFGLTIGLMALVPFGGSVGIGLVTILV 284

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            ++ NI     +     I   IV+  + P ++G    L     F  ++ G R  G LG
Sbjct: 285 ALQ-NIGLGLQVLAVELIVQQIVENLIAPRVLGSVTGLNPFWVFVSILTGARVGGFLG 341


>gi|194292084|ref|YP_002007991.1| hypothetical protein RALTA_B1335 [Cupriavidus taiwanensis LMG
           19424]
 gi|193225988|emb|CAQ71935.1| conserved hypothetical protein; putative membrane protein (DUF20,
           UPF0118) [Cupriavidus taiwanensis LMG 19424]
          Length = 402

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/341 (12%), Positives = 110/341 (32%), Gaps = 14/341 (4%)

Query: 10  GIMRWMIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
                +++  +L SLY +   + F  PV+ A+++ +   P+  +   +   + +  + I 
Sbjct: 51  RASTALMVLAVLFSLYAMHVARDFLVPVVIAVVMAYLLDPLVCAL-QRLGLARSLASTIV 109

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW--ASELWT 124
            ++++      LL   Y    +++ +V+ +             L      MW       T
Sbjct: 110 LLALLSA----LLSGAYLLQGQVESMVNSLPEMASKLSRSLGALLSGDDSMWQKIRRAAT 165

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                 Q         +       I        +         + ++  L+F    G + 
Sbjct: 166 VLSGTGQPPPARGTQVVVEQSSGHINNMLLAGSVSVFTMAAQAVVVVFLLYFLMLAGDTF 225

Query: 185 SQQLDSLGEHLFPAYW--KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            ++   +             +   V   IR     + +   G G+         GV +  
Sbjct: 226 KRKFIKMVGTTISEKKISVHMLDEVNLSIRRYMGMLVVTNAGLGVCTWVLLKWLGVDNAG 285

Query: 243 ALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +  +  A + ++P  G   I+     +  +  G +  A        +   ++   +  ++
Sbjct: 286 SWSIAAAALHLVPYFGALAIALCLGMVTFMQFGTLGMAAAAAGGSLLIATLIGSVITTWM 345

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            G   ++  +  F  L+      G+ G+ +   L+ +  V+
Sbjct: 346 TGRMARMNAVAVFVALLLFTWLWGVWGMLLAIPLITIAKVV 386


>gi|307692101|ref|ZP_07634338.1| hypothetical protein RbacD_03894 [Ruminococcaceae bacterium D16]
          Length = 426

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/364 (12%), Positives = 101/364 (27%), Gaps = 40/364 (10%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPI----YSSFISKKEE------SST----------- 60
             L  L     P+   L++ F   PI    Y   +   +                     
Sbjct: 38  ALLDTLAYILRPIFYGLVLAFLLLPIQRGIYEFLLEWLKGVWVNWPRKNGMLRFVSILLS 97

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV-----SKVVLANQHGIPVPRWLSDIPG 115
               +  V ++   ++P L+    G++             +    Q    +   +  +P 
Sbjct: 98  LAFAVLVVYILLAMVLPQLYSSIVGLVNAFPGYIDSVQQWLTDFFQDNPDLQEAV--LPY 155

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGID--FIPRFASRFGMI------FLDYCLSI 167
              ASE   K  +    L            +     PR    F  +       +     +
Sbjct: 156 YNSASESLEKWFTENGLLSNFQSADATMEWLQTELFPRLTGVFTSVYAGLWALVMLLKDL 215

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS----RIVPKVIRSTFLGMTIIAI 223
           +  +I   +        + Q   +   +F            R   +++     G  + ++
Sbjct: 216 LIAVIVSVYVLVRKDKFAAQTKKITYSIFSTRIADFLVEETRSAYRILSGFINGKLLDSL 275

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
             G++      L   P  + L VI  +  +IP   P         L++  +        +
Sbjct: 276 IIGIIALVCCNLLKFPYPMLLAVIIGVTNVIPFFGPFIGAIPCALLILLVSPLQCVYFCI 335

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +  I        L P ++G    L      F ++      G  G+ +G  + A+   +  
Sbjct: 336 FVLILQQFDGNILGPKILGDSTGLDSFWVLFSILLFGGLFGFAGMVLGVPVFAMFYSVIS 395

Query: 344 ESIM 347
             + 
Sbjct: 396 RLVR 399


>gi|323465615|gb|ADX69302.1| Permease [Lactobacillus helveticus H10]
          Length = 344

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 56/339 (16%), Positives = 115/339 (33%), Gaps = 17/339 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            N   + R+++  II+  LY ++     +L   I  +    +         +  T   V+
Sbjct: 9   KNNIPLRRFVVFLIIVAFLYEMRAMMNTILLTFIFTYVIVHLIHLVQRYVPKMPTGAIVV 68

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T  ++      L  L+++  + M  LV ++    +  +             +A+   +K
Sbjct: 69  VTYLII------LALLYFFITVYMPMLVGQISKMVKSVMAFYESAESSRLLSYATHYISK 122

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +    Q+           + + F    A+  G + +   +S+I   +      +     S
Sbjct: 123 NEIITQA----------KHAMTFAFHTATSIGTLTITTFMSLILSFLYTIELKKMREFSS 172

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             + S          +   +               IAI    +      +  +P  VALG
Sbjct: 173 LFVKSGYLKWLFEDIRYFGKKFTNTFGVVLEAQFFIAICNTALTMIGLTIMKMPQIVALG 232

Query: 246 VITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           ++  I++++P  G  IS   +S+     G I     +F+   I   I    L P  +   
Sbjct: 233 LMVFILSLVPVAGVIISLIPLSMVGYSVGGIRYVIYIFVMIMIIHAIEAYVLNPKFMASK 292

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            +LP   TF  L+      G  GL +G  +   +  +  
Sbjct: 293 TELPIFYTFLVLLVAEHFWGTWGLIVGVPIFTFLLDVLN 331


>gi|312881830|ref|ZP_07741601.1| hypothetical protein VIBC2010_06219 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309370476|gb|EFP97957.1| hypothetical protein VIBC2010_06219 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 357

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/310 (15%), Positives = 100/310 (32%), Gaps = 13/310 (4%)

Query: 45  WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
           WP+    +S+     T   ++  +    + +V +  L      ++  L++ V        
Sbjct: 54  WPVVQ--LSRLSLPRTLAVILVILGFTSIMLVAIFGLVPTIWEQVGNLINDVPNMYVG-- 109

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
                L  +   +       +H    +SL   ++  +   G   +    +   +      
Sbjct: 110 -----LQSVIAELPRRYPELEHFQIIESLVSNAKNQVIGVGETVVKGSLASL-VSLATLG 163

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
           + +I + + +FF  +D   + Q               K+   + + I +   G  +  + 
Sbjct: 164 VYLILVPLLVFFLLKDKQQLVQMASGFLPR-NRRLATKVWDEMNEQISNYIRGKVMEILI 222

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIY-LLIKGNIFNATCLF 282
            G V    + +  +   V L V   +  +IP  GA      V+I  L   G   +   L 
Sbjct: 223 VGTVSYVTFAVLDLRYSVLLAVAVGLSVLIPYIGAAAVTVPVAIVGLFQWGLSSDFYWLL 282

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              AI   +    L P L    + L  +     ++      G  G+F    L  L+  +W
Sbjct: 283 AAYAIIQALDGNVLVPVLFSEAVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVW 342

Query: 343 KESIMAIKEN 352
                   E+
Sbjct: 343 SALPSHEDED 352


>gi|295396780|ref|ZP_06806915.1| brp/Blh family beta-carotene 15,15'-monooxygenase [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294970364|gb|EFG46304.1| brp/Blh family beta-carotene 15,15'-monooxygenase [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 405

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 61/325 (18%), Positives = 121/325 (37%), Gaps = 28/325 (8%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF-------LKGFFAPVLSALIIGFTSWPIYSSFIS 53
           M      P  + R++I+ + L  L F       L+   APV  AL +     P+ +  IS
Sbjct: 1   MATDSARPAMLPRFLIIVLGLAGLAFGIQFIQGLQTIVAPVFLALNLVVVVHPLQAYLIS 60

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
           K+      +A   TV ++   +V    L  + + E+  ++                L+ +
Sbjct: 61  KRV--PAIVAASITVVIVLALLVVFFALNAWAIAELVIVLPSYSHK----------LAQL 108

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
            G        T     P+ ++     F  ++  D + +  S    I     L+ + M   
Sbjct: 109 YG--EVIRFTTSWGLTPEVIQNQLSAFDFSSMTDAVLQVLSNVSAIL--ALLTTVVM--T 162

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           +FF   D      +L  +G+      +    R   + +R  ++  TI  +   +    A 
Sbjct: 163 VFFVIMDSLQFPARLREVGK--VAPQFSFAMRSFGQGVRRYWVVATIFGLIVAVFDVIAL 220

Query: 234 WLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           W+ GVP  +  GV+      IP  G  I     ++  L++G  ++A  + +      F++
Sbjct: 221 WIIGVPLALVWGVLAFTTNYIPNVGLIIGLIPPALMALLEGGWWDAFWVVVAYLTLNFVI 280

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLV 317
              ++P   G  + +    +F  L+
Sbjct: 281 QAIIQPKFTGESVGVTPFISFLSLL 305


>gi|227893788|ref|ZP_04011593.1| permease [Lactobacillus ultunensis DSM 16047]
 gi|227864396|gb|EEJ71817.1| permease [Lactobacillus ultunensis DSM 16047]
          Length = 365

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/337 (13%), Positives = 110/337 (32%), Gaps = 27/337 (8%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           R+++  +I+  LY ++     +L   I  +    +         +  T + V+ T  ++ 
Sbjct: 36  RFIVFLLIVAFLYEMRAMTNTILLTFIFTYVIVHLIHLVQRYLPKMPTGVIVVITFLIIL 95

Query: 73  LFIVPLLFL-FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
             +  ++ +       ++ +++  V+   +                      T+++S  +
Sbjct: 96  ALLYFVITVYLPMLAAQITKMIKSVMAFYESN-----------ESSRLMSYVTRYISKAE 144

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ---- 187
            ++                  A           ++    +I  FF+  +   + +     
Sbjct: 145 LIEQAKHAM----------TIAFHTATSIGTLTIATFMSLILSFFYTIELDKMREFSALF 194

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + S          +   +               IAI   ++      +  +P  +ALG++
Sbjct: 195 VRSGYLKWLFEDIRYFGKKFTNTFGVVLEAQFFIAICNTVLTMIGLAVMKMPQIIALGLM 254

Query: 248 TAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             I++++P  G  IS   +SI     G I     +F+   I   I    L P  +    +
Sbjct: 255 VFILSLVPVAGVIISLIPLSIVGYSVGGIRYVIYIFIMIMIIHAIEAYVLNPKFMASKTE 314

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           LP   TF  L+      G  GL +G  +   +  +  
Sbjct: 315 LPIFYTFLVLLVAEHFWGTWGLIVGVPIFTFLLDVLD 351


>gi|56751011|ref|YP_171712.1| hypothetical protein syc1002_c [Synechococcus elongatus PCC 6301]
 gi|81299329|ref|YP_399537.1| hypothetical protein Synpcc7942_0518 [Synechococcus elongatus PCC
           7942]
 gi|56685970|dbj|BAD79192.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81168210|gb|ABB56550.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 387

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/337 (11%), Positives = 104/337 (30%), Gaps = 9/337 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +      L+ L+     + +A+++      +      +   S      +  + +     +
Sbjct: 12  ILAAAYILWQLRQVMLLLFAAVVLAVIINHLARQLQQRLRWSRRTSLAVTLLGITIGGGL 71

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIP-----VPRWLSDIPGGMWASELWTKHLSHPQ 131
            +  L    +++ +EL+          +      +   +  +PG        +   S  +
Sbjct: 72  LIALLLPPLLVQFQELLRLAPQGFAKLLTWVEERLVDVVKILPGFSDDRSARSFVDSTIR 131

Query: 132 SLKILSETFLK----TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            L             +  +  + R         L     ++ +I+ +     +  +  Q 
Sbjct: 132 DLIQGFGDRRNWSSFSQQLGPLARNFLSIFNNTLAAAAQLLLVIVLMLMMLSNPQAYRQT 191

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L    +     ++       +   FLG+ I +    ++      + GV   +   +I
Sbjct: 192 FLRLLPSFYRRRADEVLSACEISLSDWFLGILISSSAIAILSWLGLVILGVKLALVNAII 251

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
              + +IP   P       I +++    + A  + +   I   +    L P ++   + L
Sbjct: 252 AGFLNLIPNLGPTLSAVFPISIVLLDEPWKAWVVLVIYIIIQQLESYWLTPTIMARQVSL 311

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
               T    +      GL GL +   L  +  V +++
Sbjct: 312 LPALTLIAQIVFASIFGLAGLILALPLAVVAKVFFEQ 348


>gi|170748558|ref|YP_001754818.1| hypothetical protein Mrad2831_2140 [Methylobacterium radiotolerans
           JCM 2831]
 gi|170655080|gb|ACB24135.1| protein of unknown function UPF0118 [Methylobacterium radiotolerans
           JCM 2831]
          Length = 700

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/361 (12%), Positives = 107/361 (29%), Gaps = 39/361 (10%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           I+ +LYF +  F P+  AL++ F   P       ++       AV  +V +    +  L 
Sbjct: 47  IIAALYFGREIFIPIAIALLLSFVLTP--LVNRLRRLRLPRLAAVGVSVLLTVGIVAALA 104

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIP---------VPRWLSDIPGGMWASE--------- 121
            L      ++   V +     +  I          V +++++I   +  ++         
Sbjct: 105 TLIGIQAADLAGDVPRYRDTIERKIDGLRNSPVGHVTQYVANIGRALHGAKEAGSPETQS 164

Query: 122 ---------------LWTKHLSHPQSLKILSETFLKTNGIDFIPRF--ASRFGMIFLDYC 164
                            +     P+  +   +  L              S      +   
Sbjct: 165 AAQQSATPPSTPPSTPPSTPSPGPEPTQAAPKPVLVEVATTPPGSLEMLSTVLTPVMHPL 224

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
            ++  + + L F       +  ++  L                 K +   F+    +   
Sbjct: 225 ATVGIVFVVLLFVLMQREDLRDRMIRLAGSSDLHRTTVAIDDAAKRLSRYFVVQLALNAA 284

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLF 282
            G+V+G   ++ GVP+ V   +  A+M  +P    +      +++   +         + 
Sbjct: 285 FGVVIGIGLYIIGVPNPVLWAIFAALMRFVPYLGAVLSAILPMALAAAVDPGWNMMIAVA 344

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +   +   +  +   P   G    L         +      G +GL +   L   + V+ 
Sbjct: 345 ILFIVLEPLTGQVFEPIFYGQSTGLSPFAVLVSALFWTWLWGPVGLLLSTPLTVCLVVLG 404

Query: 343 K 343
           +
Sbjct: 405 R 405


>gi|169829929|ref|YP_001700087.1| hypothetical protein Bsph_4506 [Lysinibacillus sphaericus C3-41]
 gi|168994417|gb|ACA41957.1| UPF0118 membrane protein [Lysinibacillus sphaericus C3-41]
          Length = 350

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 132/358 (36%), Gaps = 22/358 (6%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
              G  R++I+  I ++LY ++     +L   II +    + +       + +       
Sbjct: 6   QSNGFKRFIILVGIAIALYLMRSMINLILLTFIITYLMNQLTTKTTKSIRKYTPMNEKAV 65

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           TV++  L +  ++ +              + +  Q    +   ++        +E+    
Sbjct: 66  TVTLYLLLVAGIVAVI----------YKYLPIVTQQVTQLFDLIASFNLDPDDNEI--AR 113

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
              P   KI    +L   G+D   +  +  G I +   +S+I  +  L     +   I +
Sbjct: 114 YLAPTFEKIELGKYL-EQGVDITLKNITNIGKIIMQILISLILSLFIL----LEKKRIIE 168

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 +      + +++      IRS         IIA    ++   A  + G P  +A
Sbjct: 169 FTAKFKDSKIGPLYDELNYFSRIFIRSFGKVIEAQFIIAAVNCVLSVIALSIMGFPHLIA 228

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           LG++  I+ ++P  G  IS   +SI     G +     + +   +   I    L P L+ 
Sbjct: 229 LGIMLFILGLVPVAGVIISLIPLSIIAYSIGGLMYIVYILVIVMVLHAIEAYFLNPKLMS 288

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKEKISSN 359
               LP   TF  ++     +G+ GL IG P+ M L+ ++   S    K+  + + + 
Sbjct: 289 AKTDLPIFYTFMVILFSEHFLGVWGLIIGIPLFMFLLDILGVTSSEETKQKMDAVENK 346


>gi|237731440|ref|ZP_04561921.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226906979|gb|EEH92897.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 351

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/328 (14%), Positives = 112/328 (34%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      ++
Sbjct: 14  TLNGLKIVIMLGMLVIILSGIRFAADIIVPFILALFIAVVLNPVVQRMVKLRIPRVIAVS 73

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++  + VM + ++               L       N+    +P++ S +   +   E W
Sbjct: 74  LLIVIIVMLMVLL---------------LAYLGTSLNELARTLPQYRSSLVIPLKNLEPW 118

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +      S+  L +       +  +    ++          SI  +++ + F   +   
Sbjct: 119 LQRAGIGVSVDELVKYIDPNAAMTLVTNLLAQLSNAMS----SIFLLLLTVVFMLLEVPQ 174

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +L  +     P       +     +    +  T I+I  GLV         V     
Sbjct: 175 LPNKLKQMMSR--PIEGMAAIQRAIDSVSHYLVLKTAISIVTGLVAWGMLAALDVRFAFV 232

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L    +++A  +     +   +    L P ++G
Sbjct: 233 WGLLAFALNYIPNIGSVLAAIPPIAQVLAFSGLYDALVVLAGYLVINLVFGNILEPRIMG 292

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 293 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 320


>gi|313647227|gb|EFS11679.1| hypothetical protein SF2457T_4227 [Shigella flexneri 2a str. 2457T]
          Length = 339

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/321 (13%), Positives = 114/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +       +A   V
Sbjct: 4   LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITIV 58

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E +S +   N+                       + +   
Sbjct: 59  VVVMLIALTALVGVLAASFNEFISMLPKFNKELT--------------RKLFKLQEMLPF 104

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++  
Sbjct: 105 LNLHMSPERMLQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKM-R 163

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+  +
Sbjct: 164 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGVIVWLGLALMGVQFALMWAVLAFL 222

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA IS     I +L+   ++    +     +   ++   L P ++G  + +  
Sbjct: 223 LNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMST 282

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 283 MVVFLSLLIWGWLLGPVGMLL 303


>gi|71274561|ref|ZP_00650849.1| Protein of unknown function UPF0118 [Xylella fastidiosa Dixon]
 gi|71901343|ref|ZP_00683438.1| Protein of unknown function UPF0118 [Xylella fastidiosa Ann-1]
 gi|170730816|ref|YP_001776249.1| permease [Xylella fastidiosa M12]
 gi|71164293|gb|EAO14007.1| Protein of unknown function UPF0118 [Xylella fastidiosa Dixon]
 gi|71728887|gb|EAO31023.1| Protein of unknown function UPF0118 [Xylella fastidiosa Ann-1]
 gi|167965609|gb|ACA12619.1| permease [Xylella fastidiosa M12]
          Length = 385

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/338 (15%), Positives = 135/338 (39%), Gaps = 16/338 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           ++++  +L   + L     P + ++ +G+   P+   F       S  +AV     ++ L
Sbjct: 19  YVLVGGVLWMAWLLTPVLIPFVLSVFLGWLGDPLVKRFE--WAGVSRAMAVCFVFFLVVL 76

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQ 131
            +V +L +F   +        +VV        +  W+ +  IP     +    +    P+
Sbjct: 77  LLVLVLMIFVPLIE------RQVVTLINTFPQMHDWVVNTVIPWVEQKTGSQLRTWLDPE 130

Query: 132 SLKILSETFLKTNGIDF--IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            +     +  +  G     +  + SR G + + + +++  + I  F+F RD     +++ 
Sbjct: 131 QMIQWMHSNWEQAGGVARGLFGYVSRSGFVMVTWVINLALLPILGFYFLRDWDKWVERVA 190

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +     +     +++    +V+ +   G  ++ +  G +      L G+   + +G+I  
Sbjct: 191 AAIPRAYIGTVSRLATEANEVLGAFIRGQFLVMLALGAIYAVGLSLVGLKLGLLIGLIAG 250

Query: 250 IMAMIPGGAPISFTAVSIYLLIKG----NIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +++ IP    I+   +++  +I      ++     + +   +   +    L P +VG  I
Sbjct: 251 LISFIPYLGAITGVVLALIAVIVQVHGLDLQLLVLVGVVFGVGQLLESYVLTPRIVGDKI 310

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L  +   F ++ G +  G +G+ +     A++ V+ +
Sbjct: 311 GLHPVAVIFSVMAGGQLFGFVGMLLALPGAAVVNVLLR 348


>gi|22299806|ref|NP_683053.1| hypothetical protein tlr2263 [Thermosynechococcus elongatus BP-1]
 gi|22295990|dbj|BAC09815.1| tlr2263 [Thermosynechococcus elongatus BP-1]
          Length = 344

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 55/313 (17%), Positives = 109/313 (34%), Gaps = 16/313 (5%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
              ++ A I+ F    +     ++  +    +A++  ++++   ++ +L L    + + +
Sbjct: 41  INILVIAAILAFLLNQVVIRLSARGLQRRQAIALVLLMTLVVASVL-MLLLLPLAIQQAE 99

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           EL++++           R L  +        L         +  +             +P
Sbjct: 100 ELLNQLPELADTSNQNLRHLDQL--------LRRYQFPVGVNDLMEELAIQIKGITALLP 151

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
             A      F D  L +I  +  LF+    G  I + L  L    +        R+    
Sbjct: 152 SVAITTVTRFFDTLLVLILTVYMLFY----GSGIWRGLIQLVPKPWRQGVDDALRLN--- 204

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           IRS F     + +   L L        V       +I  +  +IP             L+
Sbjct: 205 IRSFFSAQLFLGLFMFLALIPFMVALQVNFGFLFALIIGVAQLIPVVGATLGLGFVTLLI 264

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +  + + A  +FL   +   I D  L P L+G  + L  L  F  L+ G R  G LG+ +
Sbjct: 265 LFQDAWLALNIFLIAVVLQQIKDNVLAPKLLGNLMGLNPLWQFIALLIGARVAGFLGILL 324

Query: 331 GPVLMALIAVIWK 343
              L A + ++ +
Sbjct: 325 AIPLAATVKMVLE 337


>gi|154500526|ref|ZP_02038564.1| hypothetical protein BACCAP_04199 [Bacteroides capillosus ATCC
           29799]
 gi|150270757|gb|EDM98053.1| hypothetical protein BACCAP_04199 [Bacteroides capillosus ATCC
           29799]
          Length = 359

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/319 (15%), Positives = 102/319 (31%), Gaps = 4/319 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L  +  P L AL + +   P     + +        A + TV +  L    L  + +  
Sbjct: 29  VLLPWVLPFLLALGLAWLMEPAVKMLMGRFRLRRGLAAALTTVGLALLLCGALGLVLWRV 88

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS--ELWTKHLSHPQSLKILSETFLKT 143
             E+  L+ ++ +       +   + D       +                I     L  
Sbjct: 89  GYELALLLGRLPVLLSGLPALGDHVGDWAYRFIVALPVQLQDFAKDALDGFIRQGISLPA 148

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
              D +   A+       D  L +    +A FF       +   L       +     K 
Sbjct: 149 KLYDVLAGIAAGAAAAVPDAMLFLFTTALAAFFTSAARPQVLSFLSRQIPVSWRDRLGKA 208

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISF 262
             ++   +        ++ +     L   + +  V   + L  + A++  +P  G     
Sbjct: 209 VPVLKTSLGGWLRAQGLLMLVTFGELTVGFLILQVDLALLLAALVALVDALPVFGTGTVL 268

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +++ L+ G+   A  L +   + +  V   L P LVG    LP L   F +  G R 
Sbjct: 269 LPWALFSLLSGDWKLAIGLAVLYGL-VSAVRSLLEPRLVGQKAGLPPLAALFAMYVGFRA 327

Query: 323 MGLLGLFIGPVLMALIAVI 341
           +G+ G+ + P+    +  +
Sbjct: 328 LGVWGMILSPLAAIFLKQL 346


>gi|254416119|ref|ZP_05029874.1| conserved domain protein, putative [Microcoleus chthonoplastes PCC
           7420]
 gi|196177052|gb|EDX72061.1| conserved domain protein, putative [Microcoleus chthonoplastes PCC
           7420]
          Length = 336

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 77/201 (38%), Gaps = 3/201 (1%)

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     L   +++I + +  FF   D   +   +    +   P    K+S  + + 
Sbjct: 139 TIVLAILSELLTQFVNLILIAVVAFFMLLDRGRLWSFI---LQRFPPPLRNKLSLAIQRN 195

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
               F G  +++   G+     + L  +P  + L  I  +  +IP         +   ++
Sbjct: 196 FLGFFWGRLLLSAFFGISAFVIFVLFRIPYALVLAAIAGVFDLIPAIGATLGITIVALIV 255

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +   I  +  +         + +  L P ++ G + +  +  FF L+ G R  GLLG+F+
Sbjct: 256 LPQGILLSITVLAICVTLQQVEENLLMPRIMQGSLDMNPVVMFFALLVGARVAGLLGVFL 315

Query: 331 GPVLMALIAVIWKESIMAIKE 351
              L  ++  +++ + M  K+
Sbjct: 316 AIPLAGVMISLFEINEMKGKD 336


>gi|157135530|ref|XP_001663484.1| hypothetical protein AaeL_AAEL013335 [Aedes aegypti]
 gi|108870200|gb|EAT34425.1| conserved hypothetical protein [Aedes aegypti]
          Length = 807

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 83/228 (36%), Gaps = 8/228 (3%)

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +    + + +   L  + I  +       G   L +    I     L++  +       +
Sbjct: 580 ADSLWILLRTNLTLLASAIGTLVSVILGGGHAVLKFLFHTIIFFTTLYYLLQSSQ---DR 636

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                  +  ++  +I + +   I S  +    +A+  GL     + + G        V+
Sbjct: 637 YAPTAITINNSWGPRIIQALEDSISSVVVATLKLALFHGLFTWLTHTIVGAHIVYLPAVL 696

Query: 248 TAIMAMIPGG-APISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            +I+A  P   +        + L +  + F     L L   I     +  +   + GG  
Sbjct: 697 ASILAAAPFLESYWCSVPAFLDLWLSQDRFWLGALLVLVHFIVPSNFNPIIHSEIKGGG- 755

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                 T   + GG+   GL G  +GP+L+ ++ V+++ ++ AI+++ 
Sbjct: 756 --HPYLTGLSIAGGMYLFGLEGALLGPLLLCVMVVLFEVTMSAIRDSP 801


>gi|327182581|gb|AEA31028.1| permease [Lactobacillus amylovorus GRL 1118]
          Length = 344

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/336 (15%), Positives = 109/336 (32%), Gaps = 27/336 (8%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT-VSVM 71
           R ++  +I+  LY ++     +L   I  +    +         +  T + V+ T + ++
Sbjct: 16  RVVVFLLIVACLYEMRAMMNTILLTFIFTYVIVHLIRLVQRYIPKMPTGIIVVVTYLIIL 75

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L    +       M+++ ++V  V+   +               +      T ++S  +
Sbjct: 76  ALLYFVITVYLPMLMVQISKMVKSVMAFYESD-----------ESLRLMSYVTHYISKGE 124

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ---- 187
            ++                 FA           ++    +I  FF+  +   + +     
Sbjct: 125 LIEQAKHAM----------TFAFHTATNIGTLTIATFMSLILSFFYTIELKKMREFSSLF 174

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + S              +              +IAI    +      +  +P  VALG++
Sbjct: 175 VKSGYLKWLFEDICYFGKKFTNTFGVVLEAQFLIAICNTALTMIGLAIMRMPQIVALGLM 234

Query: 248 TAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             I++++P  G  IS   +SI     G I     +F+   I   +    L P  +    +
Sbjct: 235 VLILSLVPVAGVIISLIPLSIVGYSVGGIRYVIYIFIMIMIIHAVEAYVLNPKFMASKTE 294

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           LP   TF  L+      G  GL +G  +      + 
Sbjct: 295 LPIFYTFLVLLVAEHFWGSWGLIVGVPIFTFFLDVL 330


>gi|326335034|ref|ZP_08201234.1| brp/Blh family beta-carotene 15,15'-monooxygenase [Capnocytophaga
           sp. oral taxon 338 str. F0234]
 gi|325692839|gb|EGD34778.1| brp/Blh family beta-carotene 15,15'-monooxygenase [Capnocytophaga
           sp. oral taxon 338 str. F0234]
          Length = 361

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 63/343 (18%), Positives = 128/343 (37%), Gaps = 22/343 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +F++ + +Y L+     V+ A ++     PI      K +  +T+  + +   +MC FI 
Sbjct: 23  VFLLCLGIYKLQNVIIYVILASVLALIGRPIIQFLKKKLKFKNTWATITSIGLIMCFFIG 82

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +       + + K L S  +        +  +L +I   +  ++L +   + P+ L   
Sbjct: 83  LMSLFIPMLITQGKNLAS--IDFQALNDNILLFLDNILLSLGFTKLESNITNIPELLN-- 138

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                    +  +    + F  I  +  + +  +    FFF +DG +IS    SL +   
Sbjct: 139 ---------MQDVSSVVNGFIEIISNLGMGLFSVFFIAFFFMKDGTAISNSFLSLADPKR 189

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               KK    +  ++   F+G+ +      ++L     + GV   V +  + A++ +IP 
Sbjct: 190 LPKIKKTLEEIKNLLSRYFVGLFLQLTVIFVLLTIVLLIFGVGDAVIIAFLCALLNLIPY 249

Query: 257 GAPISFTAVSIYLLIKG--------NIFNATCLFLWGAIELFIVDKTL-RPFLVGGPIKL 307
             PI    V   L I           I   T   L G +   ++D    +P +    +K 
Sbjct: 250 LGPIIGAVVISVLTISNFMDADVQSVILPKTIYVLIGFLITQLIDNVFSQPIIFSNSVKS 309

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             L  F   +      G++G+ +      ++ VI K      K
Sbjct: 310 NPLEIFLITLISGTLFGIVGMVVAIPAYTVLKVILKAVFPNNK 352


>gi|218439950|ref|YP_002378279.1| hypothetical protein PCC7424_3009 [Cyanothece sp. PCC 7424]
 gi|218172678|gb|ACK71411.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7424]
          Length = 382

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/339 (13%), Positives = 109/339 (32%), Gaps = 15/339 (4%)

Query: 13  RWMIMFIILVSLYFLKGFFAPV---LSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           RW+   I ++SLY L      +     A++       +        +   ++   +    
Sbjct: 5   RWLGFVIFVISLYILWQIQQLLLLIFMAIVFATAFNRLIRWLEYH-QIKRSYAITLTLGG 63

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + +  +  L +    + + ++L+  +            W+    G +   +        
Sbjct: 64  SLIIITLFFLLIVPPFIEQFQKLLELLPQI---------WVQIRRGLIALRDANLDLFPQ 114

Query: 130 PQSLKILSETFLKTNGIDF-IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           P +        L+    D    +             L ++F+I+       +     Q  
Sbjct: 115 PPTTLAELIKQLQPVFEDTSFWKRFFAIFSNSFAAILQLLFIIVLTLMMLIEPRPYRQGF 174

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L    +     +I       + S F G+ I +   G++ G    +  V   +   ++ 
Sbjct: 175 LRLFPSFYRRRADEIFEKTEIALGSWFTGIVISSTFIGILSGVGLLIFQVNLALFHALMA 234

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++  IP   P       I + +    +    + +   I   I    L P ++   + L 
Sbjct: 235 GLLNFIPNIGPTLSVIFPIMIALLDAPWKIGAVLILYFIIQNIESYWLTPTVMAKQVSLL 294

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              T    +   +  G+LGLF+  + + ++A  W E ++
Sbjct: 295 PAVTLMAQLFFAKVFGILGLFLA-LPLTVVAKTWIEEVL 332


>gi|119946920|ref|YP_944600.1| hypothetical protein Ping_3314 [Psychromonas ingrahamii 37]
 gi|119865524|gb|ABM05001.1| integral inner membrane protein UPF0118 [Psychromonas ingrahamii
           37]
          Length = 353

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/338 (13%), Positives = 117/338 (34%), Gaps = 22/338 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  + +  + I L  +        P L AL +     P      +++      +A+   +
Sbjct: 9   RSAIFFSAIVISLAGVKVAAPIVVPFLLALFVAIICNPAVDFLSARRIPR--GIAIACVI 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +         +    +   +E +              ++  ++   +     +   +S
Sbjct: 67  FFIFAIFFGFGGVIGAAVNGFREAI---------PTYEAQFAVELQWFIAKMSEYNIVIS 117

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                +      + T     +  F+S  G        ++  +++ + F   +G   +++L
Sbjct: 118 MTAVREYFDPAKIMTLVTSTLSSFSSVLG--------NVFLLLLTVVFMLSEGGGFAKKL 169

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
               +       +K      K +       TI+++  GL++G A WL GV  +V   ++ 
Sbjct: 170 HIAFDD--SVKTEKRLDHFLKSVNKYMAIKTIMSLMTGLMIGFALWLMGVDFYVLWALLA 227

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++  IP  G+ I+     I   ++  +  A  +         ++   + P  +G  + L
Sbjct: 228 FLLNYIPNIGSIIAAVPAVILTFLQLGMGYAAAVIALFVGVNTLMGNVIEPRFMGRSLGL 287

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             L  F  L+     +G++G+ +   L  +  +  + S
Sbjct: 288 STLVVFLSLIFWGWLLGMVGMLLSVPLTMIFKIALENS 325


>gi|308235343|ref|ZP_07666080.1| hypothetical protein GvagA14_03796 [Gardnerella vaginalis ATCC
           14018]
          Length = 530

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 55/350 (15%), Positives = 113/350 (32%), Gaps = 23/350 (6%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALI----IGFTSWPIYSSFISKKEE 57
           R      + +M  +I   + + ++F  G  A ++  ++    I     P+    I     
Sbjct: 34  RPPDWLSRALMYAVIAAFVAIFVWFAWGNIAFIVFDVVVSIFIALAIEPLVVRLIKH-GW 92

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
           S  F +              L  LF   ++ +  LV    L  Q  + +   L D+    
Sbjct: 93  SRAFAS--------------LASLFGLLVIVILLLVLFGNLFVQQAVSMVLGLPDLYNQF 138

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFI--PRFASRFGMIFLDYCLSIIFMIIALF 175
               L +     P   ++  E          +     A       L   L ++ +++  +
Sbjct: 139 AHFVLNSTGFKMPNIEQLGMEILKHVQTSWVVDFAGQAINTTWGLLAVLLDLLTILMVTY 198

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           +    G S+ + +  L        +  I  +V + I S     TI+A             
Sbjct: 199 YISAAGPSMRRSVCRLLNPKSQRRFLFIWSVVQEQISSFLFSRTILAAINATGTAIFLIF 258

Query: 236 AGVPSHVALGVITAIMA-MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
             VP  + L +   I++  +P  G  +      ++        +A  + ++  I   I +
Sbjct: 259 MNVPYWLPLSLFCGIVSQFVPTIGTYLGGALPILFAWGSNGFGSAIAVLIFVTIYQQIEN 318

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             + P +    + L     F  ++      G LG F+   + A +  I K
Sbjct: 319 MVISPKISEKTMDLNPAVAFLSVLIMGAVFGALGAFLALPVTASLQAILK 368


>gi|283787887|ref|YP_003367752.1| hypothetical protein ROD_43431 [Citrobacter rodentium ICC168]
 gi|282951341|emb|CBG91040.1| putative membrane protein [Citrobacter rodentium ICC168]
          Length = 349

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/321 (15%), Positives = 118/321 (36%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +     A IA V V
Sbjct: 14  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVKRP---AAIAIVVV 70

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + LF   L  L       + E ++ +   N+       +L ++   +             
Sbjct: 71  VMLFA--LTALVGVLAASLNEFLAMLPKFNKELTRKLMYLQEMMPFL------------- 115

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L I  E  L+    + I  F +           S++ +++ + F   +   +  ++  
Sbjct: 116 -NLHISPERMLQRMDSEKIMSFTTTLMTELSGAMASVVLLVMTVVFMLFEVRHVPYKM-R 173

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              H    +   + R +  V     L   + ++  G+++     L  +   +  GV+  +
Sbjct: 174 FALHNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGVIIWLGLELMNIQFALMWGVLAFL 232

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  G+ IS     I  L+   ++    +     +   ++   + P ++G  + +  
Sbjct: 233 LNYVPNIGSVISAVPPMIQALLFNGVYECVLVGALFLVVHMVLGNMVEPRMMGHRLGMST 292

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           L  F  L+     +G +G+ +
Sbjct: 293 LVVFLSLLVWGWLLGPVGMLL 313


>gi|331086216|ref|ZP_08335298.1| sporulation integral membrane protein YtvI [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330406375|gb|EGG85889.1| sporulation integral membrane protein YtvI [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 373

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/304 (15%), Positives = 101/304 (33%), Gaps = 4/304 (1%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +F P +   +I   + P+      + +      + I  V V+ L +  L F F     E+
Sbjct: 34  YFMPFVIGWVIAMIANPVVRWLEKRLKIVRKLGSAIIIVMVLGLIVTGLYFGFSKAFTEI 93

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF--LKTNGID 147
           K  +       Q      R +     G++        +   + +  + +    L T   +
Sbjct: 94  KIFIDNFPEMYQQFEEDFRQIGREFQGIFHLLPAELQVGWDEMVNNMDQGMADLITGISE 153

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
                A  F        +++I  +I+ + F  +   I      +           +    
Sbjct: 154 PTVTAAGNFAKRLPSILIAVIVTVISAYIFIAERDEIIVWSKKIAPSAVQKKMTMVVDNF 213

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVS 266
              +   F     I I   L+L        V   +   ++ A++  +P  G   +    +
Sbjct: 214 KCAVGGYFKAQFKIMIVVALILSLGLAFLKVKYVLLCAILIALLDFLPFFGTGTAMIPWA 273

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           ++  + G+   A  L +  A    +V + ++P LV   + L  L T   L  G +   + 
Sbjct: 274 VFEFLTGDYKLAIGLIILYATTQ-LVRQLIQPKLVADSMGLTPLVTLVLLYVGYKMGSVF 332

Query: 327 GLFI 330
           G+ +
Sbjct: 333 GMIL 336


>gi|312904108|ref|ZP_07763276.1| hypothetical protein HMPREF9512_01862 [Enterococcus faecalis
           TX0635]
 gi|310632584|gb|EFQ15867.1| hypothetical protein HMPREF9512_01862 [Enterococcus faecalis
           TX0635]
          Length = 290

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 74/205 (36%), Gaps = 8/205 (3%)

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            NG   I R+    G + L + +S I      FFF  +   ++       +  F  +++ 
Sbjct: 74  QNGASMILRYIQDIGAVGLSFVMSFILS----FFFMIEKKQMADFSKLFLKSDFDWFFQD 129

Query: 203 ISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
           I     K + +          IA+   ++   A  + G     +L ++  I++++P    
Sbjct: 130 IYYFANKFVNTFGVVMEAQFFIAVVNTVITTLALAIIGFTQLPSLAIMIFILSLVPVAGV 189

Query: 260 ISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           I     +S     +G + +   +     I        L P  +    +LP   TF  L+ 
Sbjct: 190 IISCIPLSFIAYSQGGLNDVIYILALITIVHLFESYVLNPKFMSSKTELPIFYTFVILLV 249

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWK 343
             R  G+ GL +G  +      + K
Sbjct: 250 SERLFGVWGLIVGIPVFTFFLDVLK 274


>gi|296135512|ref|YP_003642754.1| protein of unknown function UPF0118 [Thiomonas intermedia K12]
 gi|295795634|gb|ADG30424.1| protein of unknown function UPF0118 [Thiomonas intermedia K12]
          Length = 352

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/335 (14%), Positives = 107/335 (31%), Gaps = 14/335 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M  T      ++  +I  + L  ++ L     P L  L + +   P+      ++   + 
Sbjct: 1   MLLTPPVKNALIWLVIGLVALWLIWLLGSILMPFLVGLTLAYVLHPLVERLKRRRIPRAL 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             AV   V++          LF    L +  +V+++V   +   P+        G    +
Sbjct: 61  GAAVAIIVAI---------GLFVGLFLLLVPVVTEIVPLIREKFPLLLQTIINWGTPLLA 111

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDF---IPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                      S++     +L  +G D+   + R AS  G+  L    ++  + +  F+ 
Sbjct: 112 RFDIHVKFDTASVQQTLSKYLSAHGEDWAGLLLRSASTGGISLLVLLGNLTLIPVVAFYL 171

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             D      ++  L                  ++     G  ++ +           +AG
Sbjct: 172 LLDWTPTLVRIRGLIPPKHRDAVLSFFHDCDVILGQYLRGQLLVMLILAFYYSLGLVIAG 231

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKT 295
               + +G+ T +   +P         +++        + +    + +   I   I    
Sbjct: 232 FNLALPVGIFTGLAVFVPYVGFGLGLLLALLAGALQFLSWYGVIAVAIVYGIGQLIESMY 291

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           + P  VG  I L  L   F L+      G  G+ +
Sbjct: 292 ITPKFVGESIGLHPLLVIFILLAFGTLFGFWGILL 326


>gi|187934482|ref|YP_001886501.1| hypothetical protein CLL_A2312 [Clostridium botulinum B str. Eklund
           17B]
 gi|187722635|gb|ACD23856.1| putative membrane protein [Clostridium botulinum B str. Eklund 17B]
          Length = 394

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 105/303 (34%), Gaps = 19/303 (6%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEES-----------STFLAVIATVSVMCLFIVPLL 79
             P+L A++I +  +PI  S  +  + +                + + ++++ + +  L 
Sbjct: 51  IKPLLIAILITYILFPITRSIENFLKNNKIYKIKNNGTSRALSIIFSYLAIIGIILGLLC 110

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVP-RWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            +++    ++ + +S   +       +    LS+    +    L    L   +   +   
Sbjct: 111 GIYFMIGGQLSKNISISNIVEYISTYLNTHSLSNSSISLALENLNLPFLDAMEDHIVEVV 170

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF-- 196
            F++    + I + AS F +       +    +I   +  +D        D L   +F  
Sbjct: 171 NFIQNYITNNIGKMAS-FAVSIGSGVATFFIALIISIYLLKDHEYFINLWDKLYYLIFRN 229

Query: 197 ---PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                    +   + +V      G  + A   G++   A  + G+     +G+I  +  +
Sbjct: 230 SKIGKKINYVFSTIHEVFGRFIRGQLLEAFFVGVLSAIALSIVGIDYAFVIGIIVGLSNL 289

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIKLPFLPT 312
           IP   PI  T ++  + +           +   I +  +D   L P +VG  + L  + T
Sbjct: 290 IPYVGPIVGTILAAIMGLLSGTPIKIVYAIIAMIIVQQIDNNLLAPKIVGNSVGLHAVFT 349

Query: 313 FFG 315
              
Sbjct: 350 MLA 352


>gi|307692538|ref|ZP_07634775.1| hypothetical protein RbacD_06105 [Ruminococcaceae bacterium D16]
          Length = 369

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/310 (13%), Positives = 103/310 (33%), Gaps = 11/310 (3%)

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS 111
              K+       + + V+++ + +    F+    +  ++   + V     +   +   ++
Sbjct: 61  ERFKKLGRPLAVLTSYVAMIAIIVALFSFVLPQVVDSIQLFAASVSGYMVNLQAIINKIA 120

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
           +     +         S    L+   +  L +                 L   ++++  I
Sbjct: 121 E-----YLDLSSLDLSSLSSYLRSFLDGVLSSVTTA--ASQVMVVTSSILSMFVTLVLAI 173

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYW----KKISRIVPKVIRSTFLGMTIIAIGEGL 227
           +   +       +  Q   L     P         + R+  +   +   G  I A   G 
Sbjct: 174 VFSIYMLAGREKLLDQGRRLLRAYLPDRHVTWVSDVIRLTAETFTNFVSGQAIEACILGG 233

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
           +     +         +GVI  + A+IP         +S +LL+  +   A    ++ +I
Sbjct: 234 LCALGTFFIQPDYAALIGVIVGVSALIPVAGAYIGAILSAFLLVMVSPVRAIIFLIFLSI 293

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              I    + P +VG  I LP +     +  G    GLLG+ +   + +++  + K+ ++
Sbjct: 294 LQQIEGNVIYPRVVGTSIGLPGIWVLTAVTVGGGLFGLLGVLLSVPVASVLYALLKQDVV 353

Query: 348 AIKENKEKIS 357
                KE + 
Sbjct: 354 RRLRKKEPVK 363


>gi|237744068|ref|ZP_04574549.1| permease [Fusobacterium sp. 7_1]
 gi|229431297|gb|EEO41509.1| permease [Fusobacterium sp. 7_1]
          Length = 357

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 54/331 (16%), Positives = 128/331 (38%), Gaps = 8/331 (2%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           KG+F  ++ A+ I     PI      K + +      ++ V V+ + ++  L +    + 
Sbjct: 31  KGYFMTLIMAIFIAILLEPIKKYLKKKSKINDVLAISLSIVFVVLIVVIISLIVIPEIIS 90

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            +K L       ++  + + + +++         + TK L    +  I + T   +N  +
Sbjct: 91  SLKVLNDIYPAISEKVLTIGKDVTNYLAEKNIYTVDTKELDDYFTKFISNNT---SNIKE 147

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP----AYWKKI 203
           F+  F        L +  ++I      F    D  ++ + L++L   +F      Y    
Sbjct: 148 FVLAFIGGLVNWTLGFT-NLIVAFTLAFLILLDKKNLMKTLENLIIIIFGVKNTPYVMNK 206

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
            ++   +  S   G  I++   GL +     + G P      ++  +  MIP    I   
Sbjct: 207 LKLSKDIFISYISGKIIVSFIVGLCVYIILLITGTPYAALSAILLGVGNMIPYVGSILGG 266

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
            V+ +L++         L +   I   +    + P ++G  + L        ++      
Sbjct: 267 IVAFFLILLVAPIKTLILLIAIVIAQLVDGFIVGPKIIGDKVGLSTFWVMVSMIIFGNLF 326

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           GL+G+F+G  ++++I + + + + A +  ++
Sbjct: 327 GLVGMFLGTPILSIIRLFYIDLLKAKQGGEQ 357


>gi|237739667|ref|ZP_04570148.1| permease [Fusobacterium sp. 2_1_31]
 gi|229423275|gb|EEO38322.1| permease [Fusobacterium sp. 2_1_31]
          Length = 358

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 51/331 (15%), Positives = 129/331 (38%), Gaps = 8/331 (2%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
           G+F  ++ A+ I     PI      K + +      ++ V V+ + I+  L +    +  
Sbjct: 32  GYFMTLIMAIFIAILLEPIEKYLKKKSKINDVLAISLSIVFVVLIVIIMSLIVIPEIISS 91

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           +K L       ++  + + + +++         + T+ L+   +  I + T   +N  +F
Sbjct: 92  LKVLNDMYPAISEKVLTIGKDVTNYLAEKNIYTVNTEELNDSITNFISNNT---SNIKEF 148

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP----AYWKKIS 204
           +  F        L +  ++I      F    D  ++ + L++L + +F      Y     
Sbjct: 149 VFAFVGGLVNWTLGFT-NLIIAFTLAFLILLDKKNLMKTLENLIKIIFGVKNTPYVMNKL 207

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
           ++   +  S   G  I++   GL +     + G P      ++  +  MIP    I    
Sbjct: 208 KLSKDIFISYISGKIIVSSIVGLCVYIILLITGTPYAALSAILLGVGNMIPYVGSIFGGI 267

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           V+ +L++         L +   I   +    + P ++G  + L        ++      G
Sbjct: 268 VAFFLILLVAPIKTLILLIAIIISQLVDGFIVGPKIIGNKVGLSTFWVMVSMIIFGNLFG 327

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           ++G+F+G  ++++I + + + +   ++  ++
Sbjct: 328 IVGMFLGTPILSIIKLFYVDLLKRAEQGGKE 358


>gi|77164880|ref|YP_343405.1| hypothetical protein Noc_1381 [Nitrosococcus oceani ATCC 19707]
 gi|254434105|ref|ZP_05047613.1| conserved domain protein, putative [Nitrosococcus oceani AFC27]
 gi|76883194|gb|ABA57875.1| Protein of unknown function UPF0118 [Nitrosococcus oceani ATCC
           19707]
 gi|207090438|gb|EDZ67709.1| conserved domain protein, putative [Nitrosococcus oceani AFC27]
          Length = 384

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 57/325 (17%), Positives = 113/325 (34%), Gaps = 19/325 (5%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P++ ++++ ++  PI S+    K       A +    ++ LFI  L +  Y    +  
Sbjct: 44  LVPLVFSILVSYSLDPIVSALERLKVPR-WLGATL----LVMLFIGLLGYGSYTLRDQAM 98

Query: 91  ELVSKVVLANQ---HGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            L+ K+  A Q   H + V    S         E   K     +S    + +        
Sbjct: 99  VLLDKIPQAVQTLRHSMQVKPADSREGVIKKVQEAAEKIQEATKSADDNATSSKPGVMKV 158

Query: 148 FIPRFASRFGM-------IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
            I     + G          L +   +  +++ +  F   G +  ++L  +         
Sbjct: 159 EIVEPGLKLGEYVWWGSLGVLAFLAQLATVVMLVLLFLVSGDTYKRKLVKITGPTLSEKK 218

Query: 201 K--KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GG 257
              +I   +   IR     + I  +  GL    A+   G+      G+I  + + +P  G
Sbjct: 219 VTVQILDDINMQIRRHLFVLVISGVFVGLATWGAFLWIGLEQAALWGLIAGVASTVPYLG 278

Query: 258 APISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             + F A +I  L++ G I     +     +   I    L P+L      +  +  F GL
Sbjct: 279 PAVVFAATTIVALVQFGTITMGLGVGAASLLITGIQGNWLTPWLTSRTSSINAVVVFIGL 338

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVI 341
           +      G +GL +   ++ +I V 
Sbjct: 339 LFWGWLWGPIGLIVATPILIIIKVC 363


>gi|311114317|ref|YP_003985538.1| hypothetical protein HMPREF0421_20433 [Gardnerella vaginalis ATCC
           14019]
 gi|310945811|gb|ADP38515.1| hypothetical integral membrane protein in UPFO118 [Gardnerella
           vaginalis ATCC 14019]
          Length = 533

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 55/350 (15%), Positives = 113/350 (32%), Gaps = 23/350 (6%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALI----IGFTSWPIYSSFISKKEE 57
           R      + +M  +I   + + ++F  G  A ++  ++    I     P+    I     
Sbjct: 37  RPPDWLSRALMYAVIAAFVAIFVWFAWGNIAFIVFDVVVSIFIALAIEPLVVRLIKH-GW 95

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
           S  F +              L  LF   ++ +  LV    L  Q  + +   L D+    
Sbjct: 96  SRAFAS--------------LASLFGLLVIVILLLVLFGNLFVQQAVSMVLGLPDLYNQF 141

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFI--PRFASRFGMIFLDYCLSIIFMIIALF 175
               L +     P   ++  E          +     A       L   L ++ +++  +
Sbjct: 142 AHFVLNSTGFKMPNIEQLGMEILKHVQTSWVVDFAGQAINTTWGLLAVLLDLLTILMVTY 201

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           +    G S+ + +  L        +  I  +V + I S     TI+A             
Sbjct: 202 YISAAGPSMRRSVCRLLNPKSQRRFLFIWSVVQEQISSFLFSRTILAAINATGTAIFLIF 261

Query: 236 AGVPSHVALGVITAIMA-MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
             VP  + L +   I++  +P  G  +      ++        +A  + ++  I   I +
Sbjct: 262 MNVPYWLPLSLFCGIVSQFVPTIGTYLGGALPILFAWGSNGFGSAIAVLIFVTIYQQIEN 321

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             + P +    + L     F  ++      G LG F+   + A +  I K
Sbjct: 322 MVISPKISEKTMDLNPAVAFLSVLIMGAVFGALGAFLALPVTASLQAILK 371


>gi|296112802|ref|YP_003626740.1| hypothetical protein MCR_0576 [Moraxella catarrhalis RH4]
 gi|295920496|gb|ADG60847.1| conserved hypothetical protein [Moraxella catarrhalis RH4]
          Length = 369

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 55/338 (16%), Positives = 119/338 (35%), Gaps = 9/338 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV-IAT 67
           + +     + + L +L+ +K    P ++A I+ +   P+ S              V I+ 
Sbjct: 11  RRLFILAALCLFLYALFLMKTVITPFVAAFILAYFLNPLVSRLALIMPRILAVSVVYISC 70

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             VM   I+ L+ + +  M  + E +  ++           W++                
Sbjct: 71  FVVMGALIIWLVPMVWAQMQILWESLPHIITWYNDTGR--AWIARYTNSELLP---LDID 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +     +   + N +  + +     G+   +    I+ + I  F+F          
Sbjct: 126 LISNTALDYFQNNYQVNDVQGLIKQVFSSGISAANNIGLIVMVPILTFYFLLGWNQRLYT 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                   +     +I+R     + +   G  ++ +  G +      L G+   + +G+ 
Sbjct: 186 WKLSIPKPYTNKVVRIARDCDTALMNFAKGQFLVMLLLGAIYAIQLQLIGLQLGLIIGIT 245

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--DKTLRPFLVGGP 304
             I + +P  G  I   A  I  L +  +       ++GA  +  V     L+P L+G  
Sbjct: 246 AGIASFVPYLGFGIGIIAALIAGLFQFGLDWIYLGLIFGAFMIGQVVEGYILQPLLLGDK 305

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           I L  L   F ++ G    G +G+ I   + A+I V++
Sbjct: 306 IGLSPLWVIFSVLAGASLFGFVGMLIALPVSAVINVLF 343


>gi|289423551|ref|ZP_06425352.1| permease [Peptostreptococcus anaerobius 653-L]
 gi|289156053|gb|EFD04717.1| permease [Peptostreptococcus anaerobius 653-L]
          Length = 387

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 101/287 (35%), Gaps = 2/287 (0%)

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           L+++ T   +C+ +   LF+ +        L S +    +    +  +   +   +  S 
Sbjct: 88  LSLLMTYFTVCILV--YLFIEFILPEVAASLSSIITDFPRIVNKLYLYTDSLISSIEISG 145

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              + ++              TN + ++            +  L II  +  L       
Sbjct: 146 PAKEFVTAKIEEIGKQLMEFATNLMPYLANTLLMVLKSIWNLVLGIIISVYVLADKEGFY 205

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               + + ++       Y   ++ +   +     +G  I +   G +     ++  +P  
Sbjct: 206 AMCKKFIRAVFSISAGDYILYVTDLSNDMFGKFIVGKIIDSTIIGAIAFIVLYIVKMPYL 265

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           + +  I  +  +IP   P      SI L++  +   A  L +   I   +    + P ++
Sbjct: 266 ILITFIIGVTNIIPFFGPFIGAVPSIILVLFVSPIKALWLTIIIFIIQQLDGNVIGPKIL 325

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           GG + +      F L+   +  GL+G+ +G  L A+I  +  E+I  
Sbjct: 326 GGSLGISSFWILFSLLLAGKFFGLIGMVLGVPLFAVIHTLAGETIND 372


>gi|237800255|ref|ZP_04588716.1| hypothetical protein POR16_15601 [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331023112|gb|EGI03169.1| hypothetical protein POR16_15601 [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 335

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 50/341 (14%), Positives = 109/341 (31%), Gaps = 16/341 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  +++F+    +  L G  APVL+ L++ F    + S+    +      + ++ T+
Sbjct: 1   EAVVLAVLLFLAFTLVLTLGGMLAPVLAGLVLAFLMHGLVSALERLRMPEMAAVGLVFTL 60

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
                      F+    +  +  +              P  L+     +        HL 
Sbjct: 61  -----------FIGVLLVFLLVLVPLLWHQMITLFNEAPGMLAKWQSVLLLLPERYPHLV 109

Query: 129 HPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
             + + +  E      G        F+     + ++  + ++ + I +FFF +D   I +
Sbjct: 110 SDEQVLLAIEVARGEVGKIGQLALTFSISSLPLLVNLMIYLVLVPILVFFFLKDRHMIGR 169

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
                      A   +++  + + I +   G  I     G V   A+   G+     L +
Sbjct: 170 WARGYLPR-ERALLNRVADEMKRQIANYIRGKVIEIFICGGVTYIAFVALGLNYAALLAM 228

Query: 247 ITAI--MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           +  I  +    G   ++     I L   G       L +   I   +    L P L    
Sbjct: 229 LVGISVVVPYVGAVVVTVPVALIGLFQWGWGDQFIYLMIAHGIIQALDGNVLVPLLFSEA 288

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           + L  +     ++      G  G+F    L  L   +    
Sbjct: 289 VNLHPVAIICAVLLFGGLWGFWGIFFAIPLATLFKAVLDAW 329


>gi|87301855|ref|ZP_01084689.1| hypothetical protein WH5701_00980 [Synechococcus sp. WH 5701]
 gi|87283423|gb|EAQ75378.1| hypothetical protein WH5701_00980 [Synechococcus sp. WH 5701]
          Length = 379

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 54/295 (18%), Positives = 107/295 (36%), Gaps = 17/295 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  F A  L+A +I F           +       LA++  + ++ L +V  L++    +
Sbjct: 34  LAPFPALFLTAALIAFLLDLPSRWLTGRGLPRPLALALVLGLGLLVLVLV-ALWIIPLLV 92

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL--KTN 144
            ++ +L++           +P W  +    +  ++ W      P     LS   L   T 
Sbjct: 93  EQLADLLT----------ALPGWFVEAETLLNQAQAWAVEHGLPADFGDLSSALLTRSTQ 142

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               + +         L   ++ + +I+   F    G SIS+ L      L  ++ + + 
Sbjct: 143 YASQLSQKLLGLLGATLTLTINSVIVIVLAIFLLLGGESISRGLARW---LPASWREMVL 199

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
             V +  R  F G  I+A+         + L G+P  V   V      +IP  +  +   
Sbjct: 200 GTVNRTFRGYFGGQVILALILSAAQIVVFTLLGIPYGVLFAVAIGFTTLIPYASAFTIVL 259

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           VS+ L ++ +      +         +VD+ ++P L+G  + L        L  G
Sbjct: 260 VSLLLALE-DPTTGLEVLAVAIAVGQVVDQVIQPRLMGKIVGLQPAWLLLSLPVG 313


>gi|297588299|ref|ZP_06946942.1| ABC superfamily ATP binding cassette transporter permease subunit
           [Finegoldia magna ATCC 53516]
 gi|297573672|gb|EFH92393.1| ABC superfamily ATP binding cassette transporter permease subunit
           [Finegoldia magna ATCC 53516]
          Length = 395

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 55/168 (32%)

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                         L I+ + +  F+   D       +     +     +  I   + K 
Sbjct: 191 SQTGNVTGNIFSNLLRIVLVPVVSFYMLLDKEKCIDFIMGFIPNENKDKFLSICSDMDKA 250

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
                 G  I+AI  G++   A  +  V   + +G++T +  +IP   P      +  L 
Sbjct: 251 YSEFIRGRLIMAIFVGVLTAIALIIMKVDFAIIIGILTMVGDIIPYIGPFIAVTPAFILA 310

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
              +   A  + +      ++ +  L P L+G  I +  L     L+ 
Sbjct: 311 FLDSPLKAIVVVVVFVSIQWVENNILAPKLLGSKIGINPLLVIVSLII 358


>gi|330959281|gb|EGH59541.1| hypothetical protein PMA4326_12067 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 356

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 50/349 (14%), Positives = 110/349 (31%), Gaps = 16/349 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+    + + ++  +++ +    +  L G  APVL+ L++ F    + S     K     
Sbjct: 9   MQRYFSDEEAVVLAVLLVLAFTLVLTLGGMLAPVLAGLVLAFLMHGLVSLLERLKMPEMA 68

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            + ++ T+           F+    +  +  +             +P   +     +   
Sbjct: 69  AVGLVFTL-----------FIGVLLVFLLVLVPLLWHQMITLFNELPGMFAKWQSVLLLL 117

Query: 121 ELWTKHLSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                HL   + + +  E      G        F+     + ++  + ++ + I +FFF 
Sbjct: 118 PERYPHLVSDEQVLLAIEVARGEVGKVGQLALTFSLSSLPVLVNLMIYLVLVPILVFFFL 177

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D   I +           A   +++  + + I +   G  I     G V   A+   G+
Sbjct: 178 KDRHMIGRWARGYLPR-ERALLNRVADEMKRQIANYIRGKVIEIFICGGVTYIAFVALGL 236

Query: 239 PSHVALGVITAI--MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
                L ++  I  +    G   ++     I L   G       L +   I   +    L
Sbjct: 237 NYAALLAMLVGISVVVPYVGAVVVTVPVALIGLFQWGWGGQFIYLMIAHGIIQALDGNVL 296

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            P L    + L  +     ++      G  G+F    L  L   +    
Sbjct: 297 VPLLFSEAVNLHPVAIICAVLLFGGLWGFWGIFFAIPLATLFKAVLDAW 345


>gi|153209009|ref|ZP_01947203.1| putative membrane protein [Coxiella burnetii 'MSU Goat Q177']
 gi|212219116|ref|YP_002305903.1| riboflavin transporter [Coxiella burnetii CbuK_Q154]
 gi|120575546|gb|EAX32170.1| putative membrane protein [Coxiella burnetii 'MSU Goat Q177']
 gi|212013378|gb|ACJ20758.1| riboflavin transporter [Coxiella burnetii CbuK_Q154]
          Length = 363

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 60/342 (17%), Positives = 121/342 (35%), Gaps = 34/342 (9%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F   +  PV+ ++++ +            +     + AV             +++LF+ G
Sbjct: 41  FFGKYLLPVVISVVLAYLFASPVRWLERWRFPH--WAAVT------------IVYLFFLG 86

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +  +       ++  Q    +   + + P  +   + W     H       ++     N 
Sbjct: 87  IFLLALFGLLPLMWKQ----LASMVHEFPKAITKGQAWMTEYMHRYPKLFPTDPI--ANL 140

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMII-----------ALFFFYRDGFSISQQLDSLGEH 194
             ++ + ++R G   L + L+ I  II            +FFF +DG SIS  L      
Sbjct: 141 AGYLHQQSARIGQFILSFSLASIPGIIEAILYLVLVPLLVFFFLKDGGSISNWLSRFLPE 200

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 + +   + + I +   G  I  I   +V   A+ L G+     LGV+  +  ++
Sbjct: 201 RQGL-IRIVWHEMNQKIGAYVRGRVIEIIIVSIVAVIAFVLLGLQYAFLLGVLLGLSVIV 259

Query: 255 P-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P  GA +    ++I  L++ G   +   L +  AI + +    L P L    + L  +  
Sbjct: 260 PYIGAIVVTIPIAIVGLMQWGLSAHFAYLMIVYAIIITLDGNLLVPLLFSEAMDLHPIVI 319

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
              ++      G  G+F    L  L+  +      A     E
Sbjct: 320 ILSVLVFGGIWGFWGIFFAIPLATLVKTVLNAWPKARISQNE 361


>gi|283458643|ref|YP_003363278.1| putative permease [Rothia mucilaginosa DY-18]
 gi|283134693|dbj|BAI65458.1| predicted permease [Rothia mucilaginosa DY-18]
          Length = 429

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 57/347 (16%), Positives = 115/347 (33%), Gaps = 48/347 (13%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
              ++ A+++     P     + KK   +   A IA + ++ +       +   G   ++
Sbjct: 59  VIAMMVAMLLAALLSP-TVMLLRKKGVRAGGAAAIAEIGMILVLAG---IISLTGQQILR 114

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
             VS    A Q    +  WL D+ G  + ++   + L   +S          TN    + 
Sbjct: 115 GFVSMADKAMQGYQQLIGWLKDL-GYEFGADQLNQLLEQMESAA--------TNNPSSVL 165

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              SR G    D    ++  +  L FF  +G  I   +  L             R   K 
Sbjct: 166 NGVSRVGSTAADVATGVLLTLFTLLFFLMEGERIWLFVVGLFPKDAREAVNGAGRAGWKS 225

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI---------- 260
           + +      ++A  + + +G    + GVP  + LGV+  + + IP    +          
Sbjct: 226 LGAYVRVQILVAAIDAIGIGLGAAILGVPLAIPLGVLVFLGSFIPVIGALFSGAVAVLLA 285

Query: 261 --------SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
                   +   + I LL++                  +    L+P ++G  + L  L  
Sbjct: 286 LVALGPVQALIMLGIVLLVQQ-----------------VESHILQPLIMGKAVSLHPLAV 328

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            F + GG    G +G       +A++  + +       E+   +   
Sbjct: 329 IFSVAGGSMIFGAVGALFAVPTLAVVNSVVRYLADRGWEHDPNLRDE 375


>gi|300854400|ref|YP_003779384.1| putative permease [Clostridium ljungdahlii DSM 13528]
 gi|300434515|gb|ADK14282.1| predicted permease [Clostridium ljungdahlii DSM 13528]
          Length = 342

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 55/335 (16%), Positives = 109/335 (32%), Gaps = 13/335 (3%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I+ +    +++     L+     +  + +I +T  PI    ++    +    A+I    
Sbjct: 15  TIVIFAAAALLVAKSSVLREMLYLIFISFLIAYTLKPIEIKMVNA-GVNKKVSAIIIIGI 73

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++ L +     L      E  +L +               L  I G      L       
Sbjct: 74  LILLVVSTFALLIPSLFKESLKLNATAANIQMLIDKFYAKLKLIQGNRTIHLLVNNLNRR 133

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S                I      F M   +  L ++ + I  ++F  D   I++ L 
Sbjct: 134 IDSEIAS------------IFVKIFDFLMNMGENILYLVVIPIITYYFLADDKCINESLL 181

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           S          KKI     K++        +++   G+          V   + L ++ A
Sbjct: 182 SAFPVNSRKPIKKICCHADKILGRYIASQIMLSALVGIATFFILIFLKVEFPIILSILNA 241

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
              +IP   PI     +I + +  +   A    +W  +   I    L P + G  I +  
Sbjct: 242 FFNIIPYFGPIFGALPAIVIALTKSPETALWTAVWLYLLQQIEGNILSPKVTGDSIDMHP 301

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L     L+ G +  G +G+ +      L+ VI+++
Sbjct: 302 LIVILLLIVGGKISGFIGMVLAVPFGVLVKVIYED 336


>gi|297626024|ref|YP_003687787.1| Hypothetical membrane protein [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296921789|emb|CBL56349.1| Hypothetical membrane protein [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 397

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 103/286 (36%), Gaps = 21/286 (7%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           FAP+  AL +  T++P+++  + K     + L+ + T  V+ + ++ ++    + + E  
Sbjct: 75  FAPMFLALNLMVTAYPLHTWLVRK--GCPSPLSAVTTALVVFVVLLAMVAGLVWSVNETV 132

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L             +P++  +  G       +    +     +       K+   + I 
Sbjct: 133 TL-------------LPQYADEFTG---LFNWFIDRAAQLGFDQASLMQAFKSIDPNSIF 176

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
             AS        +   +  ++  L F   D    + ++   G     +          + 
Sbjct: 177 SAASSVLNGASGFVAMLAILVTTLVFMAMDTSGFAARIRIAG--ATHSRMVTGLVSFSRG 234

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
           IR  ++  ++  +   ++   A  + GVP  +  G+++ +   IP  G  +     ++  
Sbjct: 235 IRRYWVVTSVFGLIVAVLDVIAVAIIGVPLPIVWGLLSFLTNYIPNIGFVVGLIPPALVA 294

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
           L+      A  + +   +  F+V   ++P   G  + +    +F  
Sbjct: 295 LVALGWKQALVVVVLYCVLNFVVQSIIQPRFTGESVGVTPTISFIS 340


>gi|300775369|ref|ZP_07085231.1| permease [Chryseobacterium gleum ATCC 35910]
 gi|300506109|gb|EFK37245.1| permease [Chryseobacterium gleum ATCC 35910]
          Length = 370

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/318 (15%), Positives = 116/318 (36%), Gaps = 18/318 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             + +++ +    L  FF   L A+       P  +    K     +    ++T++ + +
Sbjct: 20  IGLGYLLALGQSILAPFFLAFLMAM----LFLPAATFMERKLRFPRS----MSTMTSVFI 71

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            ++ L  + Y+   ++ +    +    +    V   L       W S+ +   +      
Sbjct: 72  MLMILCGIIYFFTNQLSDFSKDLPHLQEQFTTVFNSLQH-----WVSKTFNVKVDEQVDY 126

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                  L ++    +      F   F       +F I  L +       ++  + ++  
Sbjct: 127 INQGLNKLLSSSGVILGFTFGIFSTGFGFIIFFTLFFIFILNY----RRLLNNFIVTVFN 182

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
               A  ++    +  + +    G+ +  I   ++  +   + GV   + LGV+T ++ +
Sbjct: 183 ERHKASVQEAVNEIRIMTKKYIFGLFLQVIIVSVLTSTLLTVLGVKYAILLGVLTGLLNV 242

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIKLPFLPT 312
           IP         +S ++    +  +       G I +  VD   + PF+VG  +K+  L +
Sbjct: 243 IPYLGIFISLLISCFIAFATSTPSTCIYVALGYIAIHAVDGNIVLPFVVGSKVKINALFS 302

Query: 313 FFGLVGGVRTMGLLGLFI 330
           F G++ G    G+ G+F+
Sbjct: 303 FIGILLGEHLWGIAGMFL 320


>gi|170760921|ref|YP_001786531.1| putative transporter [Clostridium botulinum A3 str. Loch Maree]
 gi|169407910|gb|ACA56321.1| putative transporter [Clostridium botulinum A3 str. Loch Maree]
          Length = 367

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/297 (14%), Positives = 98/297 (32%), Gaps = 2/297 (0%)

Query: 43  TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH 102
              P+   F  + +       +I  V  + + ++ L  +       + ++   +      
Sbjct: 59  ILNPLVKFFERRFKIKRGLSILICYVITLGIVVLVLSMIVPKVFQSIMDIFQNIPYYTNK 118

Query: 103 GIP-VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL 161
           G   V   L +      A         + + L     +F  + G++ I      F    +
Sbjct: 119 GYEMVNDLLVNNKELSNAINSSNVFKGNYKDLIDKIASF-TSVGLNTILSQTISFTTFMV 177

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
           +    +I  I  L    +  ++  + +  +    +     +  R V  +I+       + 
Sbjct: 178 NLVFGLIIAIYVLNDREKFTYNSKRIVFLIFREKYGEKIIEFFRTVNSMIKLYIGIKALD 237

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL 281
           ++  GL+      +   P  + + +I  +  MIP   P      ++ + +      A  +
Sbjct: 238 SLIIGLLALIGLIILKSPYALLIALIVCVTNMIPYFGPFIGMIPAVVINLFYVPVKALWV 297

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
            ++  +        L P LVG  + L       G+  G    G+ G+ +    MA+I
Sbjct: 298 LIFLFLLQQFDAWYLEPKLVGDKVGLSPFLIILGITIGGSLFGVWGMLLASPAMAVI 354


>gi|18311630|ref|NP_563564.1| sporulation integral membrane protein YtvI [Clostridium perfringens
           str. 13]
 gi|169343458|ref|ZP_02864458.1| sporulation integral membrane protein YtvI [Clostridium perfringens
           C str. JGS1495]
 gi|18146314|dbj|BAB82354.1| conserved hypothetical protein [Clostridium perfringens str. 13]
 gi|169298410|gb|EDS80499.1| sporulation integral membrane protein YtvI [Clostridium perfringens
           C str. JGS1495]
          Length = 354

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 53/335 (15%), Positives = 125/335 (37%), Gaps = 9/335 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF-LKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M+  ++  + I  + I++ ++   +F    +  P L A I            I K + + 
Sbjct: 1   MKNLIIKSEKISVFFILYTLIFFTFFNTLKYTLPFLLAFIFSLLLKTPTQFLIKKFKLNV 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVL-ANQHGIPVPRWLSDIPGGMW 118
              + I+T     + I+           E   L + +    N +      +   +   + 
Sbjct: 61  GLASFISTFIFFLIIIILFTLFITSLAYESSSLTNYIQEIINTNSKEFQNYFISLQNWIE 120

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY---CLSIIFMIIALF 175
            + +    L+  ++  I S   +    + F      +  ++        + +IF +++ +
Sbjct: 121 VNFIDNAVLNLIKNTLISSFKEITVLILSFGTELIQKVFLLISYLPYTFMLLIFTVLSTY 180

Query: 176 FFYRDGFSI--SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           F  ++  +I  S+ L +     +      I   + K+  +       +     ++    +
Sbjct: 181 FLSKELNTINFSKTLSNYLNSNYSNRILTILYEIKKMFLTYCFSYLFLIFISFVLTFLGF 240

Query: 234 WLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
               +   + L VI A++ ++P  G P+ +  +       GNIF+A  LF+   I +F++
Sbjct: 241 SFLNIKYALLLSVIAALLDLLPVLGMPLIYFPLIFISYNSGNIFSAISLFILY-IFIFLL 299

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            + L P L+   + +  L     +  G+   GLLG
Sbjct: 300 RQFLEPKLMASTLGIHPLLILICIFIGLELNGLLG 334


>gi|312143672|ref|YP_003995118.1| sporulation integral membrane protein YtvI [Halanaerobium sp.
           'sapolanicus']
 gi|311904323|gb|ADQ14764.1| sporulation integral membrane protein YtvI [Halanaerobium sp.
           'sapolanicus']
          Length = 353

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 61/327 (18%), Positives = 111/327 (33%), Gaps = 8/327 (2%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +F P + A +I     PI             F  +I  + V+ +F    + +    +   
Sbjct: 30  YFTPFIIAAVIASLINPIVDILDKNIPVHRGFSVLIVLLLVVVIFAS-FIIIGGAQIYLE 88

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
              + + +   +      +WL++    + A     +     Q     +   L     D I
Sbjct: 89  LNRLLRNLPDFRTIDTQIQWLAEQNQQLEALIESWEISEAVQESIRANIQLLYNGIRDAI 148

Query: 150 PRFASRFGMIFLDYCLSIIFMII----ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
               +      L    S+  ++     A FF  RD   I   L +L           +  
Sbjct: 149 ISVINNILE-MLTRLPSVFMILFISFIATFFISRDRDDIKHFLVNLFPEDVKPKIANVFI 207

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTA 264
            +          + I+    G + G    L G    V +G+  AI+ +IP  G  + F  
Sbjct: 208 QLNISAVGYIRALLILISISGTIAGVGVHLMGFEYAVIIGLTAAILDLIPIIGPALLFYP 267

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             I  +I GN   A  LFL        V       ++G  + +  L T   L  G R +G
Sbjct: 268 WIIVSIIYGNFTQAFSLFLLHLFLAG-VRSASEGKIMGENLGVHPLATMIALFAGFRILG 326

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKE 351
            +G  +GP  + +I  +    ++ I++
Sbjct: 327 AIGFVVGPTFLVIIKAVTDSELVNIRD 353


>gi|238762175|ref|ZP_04623147.1| AI-2 transport protein tqsA [Yersinia kristensenii ATCC 33638]
 gi|238699522|gb|EEP92267.1| AI-2 transport protein tqsA [Yersinia kristensenii ATCC 33638]
          Length = 353

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/315 (14%), Positives = 108/315 (34%), Gaps = 22/315 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +I+  +        P L A+ +     P+    + K +   T   ++    ++ L  +
Sbjct: 20  LVVIMAGIKAASPIVVPFLLAIFLAIVLNPL-VKLLEKIKIPRTLAIILLVTIIVLLMAL 78

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
               L                  N+    +P++   +   M   + +    +   S+  +
Sbjct: 79  LFSRLGSSL--------------NEFARSLPQYRGMMLEKMRELQEFAMRFNIEFSVDDI 124

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                 +  ++F+ R  S          L ++ ++  LF   R  + +    D+      
Sbjct: 125 MNHVDPSMAMNFVTRLLSHLSGAMASTFLLLMTVVFMLFEVERLPYKMQLMFDN------ 178

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
           P     I R     +    +  TII+I  G+V+       GV      G++  ++  IP 
Sbjct: 179 PEQGNAILRRALNGVTHYLVIKTIISIATGIVIWLFLAAMGVRFAFLWGLLAFVLNYIPN 238

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ ++     +  L+     +A  +     +   I    + P ++G  + L  L  F  
Sbjct: 239 IGSVLAAIPPIVQALLFNGFADAFAVTGGYILINLIGGNIIDPRMMGRGLGLSTLVVFLS 298

Query: 316 LVGGVRTMGLLGLFI 330
           L+     +G +G+ +
Sbjct: 299 LIFWGWLLGPIGMLL 313


>gi|194467528|ref|ZP_03073515.1| protein of unknown function UPF0118 [Lactobacillus reuteri 100-23]
 gi|194454564|gb|EDX43461.1| protein of unknown function UPF0118 [Lactobacillus reuteri 100-23]
          Length = 347

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 85/221 (38%), Gaps = 9/221 (4%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           +GI       +  G I + + +S+I      FF+  +   +++   S  +  F  +++ I
Sbjct: 131 HGITIAVSTLTSIGAITISFVMSLILS----FFYTLELKQMNEFSHSFLDSDFGWFFQDI 186

Query: 204 S---RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
               +               IAI   ++         +P   AL +I  I +++P  G  
Sbjct: 187 DYFGKKFVNTFGVVLEAQFFIAICNTVITTICLLFMRMPQIFALSLIVFIFSLVPVAGVI 246

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS   +++     G + +   + +   I   +    L P  +     LP   TF  L+ G
Sbjct: 247 ISTIPLAMVGYSVGGVRDVVYIIIMIIIIHTLEAYVLNPKFMASRTDLPIFYTFIVLLIG 306

Query: 320 VRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKEKISSN 359
               G  GL +G P+   L+ V+  + I   K  K+++S  
Sbjct: 307 EHLFGTWGLIVGVPIFTFLLDVLGVKPIRGAKRIKKEVSEK 347


>gi|159899320|ref|YP_001545567.1| hypothetical protein Haur_2801 [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159892359|gb|ABX05439.1| protein of unknown function UPF0118 [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 402

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/347 (14%), Positives = 115/347 (33%), Gaps = 13/347 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +    ++V ++         L +L+I     P     I +   S      +   +    
Sbjct: 11  ILFTLALVVLMWMFSDAVLLFLVSLVIASAVRPFAQRLIDR-GMSRGAAYGLVYFASFVF 69

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           F      +    + E+             G  +  + + +       + W + ++     
Sbjct: 70  FGGLFAVISRGLLSEL----------QLAGDQLLNFYTRVTLTWPQGQEWQQTIASELPS 119

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           +     +        +      FG    D+   ++ ++    ++  D     +   SL  
Sbjct: 120 RQALLDYFAGTDGTAVINSIVGFGSGVFDFLAQLVILLSLSTYWAVDQNRFERLWLSLIS 179

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  + I R V   + +        +   G+ LG  + L G+P    L +  AI  +
Sbjct: 180 AKHRQRARTIWRAVELEVGAYIRSEVAQSSLAGISLGIIFELIGLPYPTLLALWIAIAWL 239

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +P    +     ++ + +  NI  A    L        +   + P L G   ++  +   
Sbjct: 240 VPWVGVLLALIPAVAVGLLVNIPVALLAGLSTIAVFAFLQIWVEPRLYGAN-RVSPVLVV 298

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
             L+   +  G+LG+ I P L A I ++ +E   + K  +E+++ ++
Sbjct: 299 LILMVMAQAFGILGMLIAPPLAATIQILGRELWFS-KSPEEQLADDY 344


>gi|312891269|ref|ZP_07750788.1| protein of unknown function UPF0118 [Mucilaginibacter paludis DSM
           18603]
 gi|311296229|gb|EFQ73379.1| protein of unknown function UPF0118 [Mucilaginibacter paludis DSM
           18603]
          Length = 377

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/350 (14%), Positives = 122/350 (34%), Gaps = 25/350 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKG--FFAPVLSALIIGFTSWPIYSSFISKKEES 58
           M +T+L     + ++++ ++ +    + G    AP++ + +      P+     +K    
Sbjct: 1   MNKTVLPYYAKLAFVLVSLLCIGYIAIIGKELLAPLVFSFLFAMLLLPMARFLENKCRIP 60

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
               A+I+ +       + +  +        +++             + RWL +      
Sbjct: 61  RGGAAMISVILFTAFIALIIYLVGSQMGTLSEDIPKIKEQFTNITDQLHRWLVN------ 114

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY---CLSIIFMIIALF 175
                           I     + T   +     AS  G  FL      L ++F+ I  F
Sbjct: 115 -------------EFHINVNQQINTVKKEANAAGASVIGSAFLSLSSIVLFLVFIFIYTF 161

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F       +   L              ++  +  +++    G+ +  +   +++     +
Sbjct: 162 FVLFYRKILIGFLLKAFGTDSEVLVFDVAEQIQYIMKKYISGLFLEMLTVCIIVFGILTI 221

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-K 294
            G+   + L +IT I  ++P     +  A+   L +  +            + + +VD  
Sbjct: 222 LGIKYALLLALITGIFNLVPYVGIFTAMAIGTTLTLGTSGPAKAIEVAAAIVGVHLVDSN 281

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            + P +VG  ++L  L    G+V G     + G+F+   ++A++ +I+  
Sbjct: 282 IIMPRIVGSKVRLNALIVVLGVVVGEMVWDISGMFLSIPVLAIVKIIFDR 331


>gi|238757692|ref|ZP_04618876.1| AI-2 transport protein tqsA [Yersinia aldovae ATCC 35236]
 gi|238704197|gb|EEP96730.1| AI-2 transport protein tqsA [Yersinia aldovae ATCC 35236]
          Length = 329

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/304 (15%), Positives = 105/304 (34%), Gaps = 22/304 (7%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
                P L A+ +     P+       K         +A V ++ + I+ +  LF     
Sbjct: 8   SPIVVPFLLAIFLAIVLNPLVKLLERIKIPR-----TLAIVLLVTIIILLMALLFSRLGT 62

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            + E    V          P++   +   M   + +    +   S+  L +    +  ++
Sbjct: 63  SLNEFARSV----------PQYRGMMLEKMRELQEFAMRFNIEFSVDDLMKHVDPSIAMN 112

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
           F+ R          +  L ++ ++  LF   R  + +    D+      P     I +  
Sbjct: 113 FVTRLIGHLSGAMANTFLLLMTVVFMLFEVERLPYKVQLMFDN------PEKGNAILKRA 166

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVS 266
              +    +  T+I+I  G+V+       GV      G++  ++  IP  G+ ++     
Sbjct: 167 LNGVTHYLVIKTVISIVTGIVIWLFLAAMGVRFAFLWGLLAFVLNYIPNIGSVLAAVPPI 226

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           I  L+     +A  +     +   I    + P ++G  + L  L  F  L+     +G +
Sbjct: 227 IQALLFNGFADAFAVTGGYVLINLIGGNIIDPRMMGRGLGLSTLVVFLSLIFWGWLLGPI 286

Query: 327 GLFI 330
           G+ +
Sbjct: 287 GMLL 290


>gi|254519193|ref|ZP_05131249.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
 gi|226912942|gb|EEH98143.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
          Length = 318

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 51/305 (16%), Positives = 109/305 (35%), Gaps = 29/305 (9%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +F P +  +I+   + P+Y  FI      +     I  +  + +  + +  + +Y    +
Sbjct: 30  YFQPFIIVVIMILITQPVYKFFI-----KTNLPKSICAILSLLIINIFIFVIIFYFGNTI 84

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             L  K    N                   SE+     +    L       L+T    F 
Sbjct: 85  LSLFYKFYRNN------------------MSEVDAFIKNMKILLNFDLNKMLQTLSGFFS 126

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                +  ++  D  +S     I  +F   D   I   L +L      + + +  + + +
Sbjct: 127 SNMIMQGAIVTGDSLVSYFLANIIDYFILVDKNKIYDLLKNLFPQEIISNFMEKIKNLKE 186

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIY 268
           V +     + + A     ++   + + G+ + + LG + AI+ ++P  G  I F  + IY
Sbjct: 187 VFKIEVRLIILSA----FIITLGFKILGIHNSIFLGSLCAILDILPFVGTTIVFMPIIIY 242

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
            +I         L     +E F+ +  L    +   +++  L     +  GV+  G +G+
Sbjct: 243 NIIMKRYLLVIGLISLYLLERFVRE-ILEAKFLSSKLEIHPLIVIVSIYVGVKMFGFVGI 301

Query: 329 FIGPV 333
             GP+
Sbjct: 302 IAGPI 306


>gi|148379130|ref|YP_001253671.1| putative transporter [Clostridium botulinum A str. ATCC 3502]
 gi|168178564|ref|ZP_02613228.1| putative transporter [Clostridium botulinum NCTC 2916]
 gi|226948415|ref|YP_002803506.1| putative transporter [Clostridium botulinum A2 str. Kyoto]
 gi|148288614|emb|CAL82695.1| putative membrane protein [Clostridium botulinum A str. ATCC 3502]
 gi|182670768|gb|EDT82742.1| putative transporter [Clostridium botulinum NCTC 2916]
 gi|226844553|gb|ACO87219.1| putative transporter [Clostridium botulinum A2 str. Kyoto]
 gi|322805470|emb|CBZ03034.1| permease [Clostridium botulinum H04402 065]
          Length = 367

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/297 (14%), Positives = 98/297 (32%), Gaps = 2/297 (0%)

Query: 43  TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH 102
              P+   F  + +       +I  V  + + ++ L  +       + ++   +      
Sbjct: 59  ILNPLVKFFERRFKIKRGLSILICYVITLGIVVLVLSMIVPKVFQSIMDIFQNIPYYTNK 118

Query: 103 GIP-VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL 161
           G   V   L +      A         + + L     +F  + G++ I      F    +
Sbjct: 119 GYEMVNDLLVNNKELSNAINSSNVFKGNYKDLIDKIASF-TSVGLNTILSQTISFTTFMV 177

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
           +    +I  I  L    +  ++  + +  +    +     +  R V  +I+       + 
Sbjct: 178 NLVFGLIIAIYVLNDREKFTYNSKRIVFLIFREKYGEKIIEFFRTVNSMIKLYIGIKALD 237

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL 281
           ++  GL+      +   P  + + +I  +  MIP   P      ++ + +      A  +
Sbjct: 238 SLIIGLLALIGLIILKSPYALLIALIVCVTNMIPYFGPFIGMIPAVVINLFYVPVKALWV 297

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
            ++  +        L P LVG  + L       G+  G    G+ G+ +    MA+I
Sbjct: 298 LIFLFLLQQFDAWYLEPKLVGDKVGLSPFLIILGITIGGSLFGVWGMLLASPAMAVI 354


>gi|187780241|ref|ZP_02996714.1| hypothetical protein CLOSPO_03837 [Clostridium sporogenes ATCC
           15579]
 gi|187773866|gb|EDU37668.1| hypothetical protein CLOSPO_03837 [Clostridium sporogenes ATCC
           15579]
          Length = 366

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/298 (13%), Positives = 99/298 (33%), Gaps = 5/298 (1%)

Query: 43  TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH 102
              P+   F  + +   +   +I  V  + +  + L  +       + ++   +      
Sbjct: 59  ILNPLVKFFERRFKIKRSLSILICYVITLGIVALVLSMIVPKVFQSIMDIFQNIPYFTNK 118

Query: 103 GIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK--TNGIDFIPRFASRFGMIF 160
           G      ++++      S +         + K L +      + G++ I      F    
Sbjct: 119 GY---EMVNNLLANEEISNIINSSNVFKGNYKDLIDKIAGFTSVGLNTILNQTISFTTFM 175

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
           ++    +I  I  L    +  ++  + +  +    +     +  R V  +I+       +
Sbjct: 176 VNLVFGLIIAIYVLNDREKFEYNGKRVVFLIFREKYGEKIIEFFRTVNSMIKLYIGIKAL 235

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC 280
            ++  GL+      +   P  + + +I  +  MIP   P      ++ + +      A  
Sbjct: 236 DSLIIGLLALIGLIILKSPYALLIALIVCVTNMIPYFGPFIGMIPAVVINLFYVPVKALW 295

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           + ++  +        L P LVG  + L       G+  G    G+ G+ +    MA+I
Sbjct: 296 VLIFLFLLQQFDAWYLEPKLVGDKVGLSPFLIILGITIGGSLFGVWGMLLASPAMAVI 353


>gi|146311563|ref|YP_001176637.1| putative transport protein [Enterobacter sp. 638]
 gi|145318439|gb|ABP60586.1| protein of unknown function UPF0118 [Enterobacter sp. 638]
          Length = 344

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 52/328 (15%), Positives = 114/328 (34%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +        
Sbjct: 7   TLNGLKIVIMLGMLVIILTGIRFAADIIVPFILALFIAVILNPLVQRMVRWRIPR----- 61

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           V+A   ++ + I+ +  L  Y    + EL             +P++ S +   +   E W
Sbjct: 62  VLAISLLITIIIMAMALLVTYLGTSLNELAR----------TLPQYRSKLVIPLQQLEPW 111

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +       +++  E  LK    +      +           SI  +++ + F   +   
Sbjct: 112 LQR----AGIEVSVEELLKYVDPNAAMTLVTGLLAQLSSAMTSIFLLLLTVVFMLVEVPQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +L  +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPVKLQQMMVR--PVEGMGAIQRALDSVSRYLVLKTAISIVTGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+    ++A  +     I   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFSGFYDALIVLAGYLIINLVFGNILEPRMMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|30261954|ref|NP_844331.1| hypothetical protein BA_1922 [Bacillus anthracis str. Ames]
 gi|47527218|ref|YP_018567.1| hypothetical protein GBAA_1922 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184795|ref|YP_028047.1| hypothetical protein BAS1783 [Bacillus anthracis str. Sterne]
 gi|49477439|ref|YP_036094.1| hypothetical protein BT9727_1762 [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|65319239|ref|ZP_00392198.1| COG0628: Predicted permease [Bacillus anthracis str. A2012]
 gi|118477382|ref|YP_894533.1| permease [Bacillus thuringiensis str. Al Hakam]
 gi|165873197|ref|ZP_02217810.1| putative membrane protein [Bacillus anthracis str. A0488]
 gi|167632969|ref|ZP_02391295.1| putative membrane protein [Bacillus anthracis str. A0442]
 gi|167638397|ref|ZP_02396674.1| putative membrane protein [Bacillus anthracis str. A0193]
 gi|170686503|ref|ZP_02877724.1| putative membrane protein [Bacillus anthracis str. A0465]
 gi|170705931|ref|ZP_02896393.1| putative membrane protein [Bacillus anthracis str. A0389]
 gi|177650969|ref|ZP_02933866.1| putative membrane protein [Bacillus anthracis str. A0174]
 gi|190566446|ref|ZP_03019364.1| putative membrane protein [Bacillus anthracis Tsiankovskii-I]
 gi|196036762|ref|ZP_03104153.1| putative membrane protein [Bacillus cereus W]
 gi|196041872|ref|ZP_03109160.1| putative membrane protein [Bacillus cereus NVH0597-99]
 gi|196047019|ref|ZP_03114238.1| putative membrane protein [Bacillus cereus 03BB108]
 gi|217959430|ref|YP_002337980.1| hypothetical protein BCAH187_A2027 [Bacillus cereus AH187]
 gi|222095573|ref|YP_002529631.1| hypothetical protein BCQ_1913 [Bacillus cereus Q1]
 gi|225863884|ref|YP_002749262.1| hypothetical protein BCA_1988 [Bacillus cereus 03BB102]
 gi|227815257|ref|YP_002815266.1| hypothetical protein BAMEG_2668 [Bacillus anthracis str. CDC 684]
 gi|228914544|ref|ZP_04078153.1| hypothetical protein bthur0012_17740 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228927017|ref|ZP_04090083.1| hypothetical protein bthur0010_17330 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228933259|ref|ZP_04096115.1| hypothetical protein bthur0009_17260 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228945567|ref|ZP_04107917.1| hypothetical protein bthur0007_17270 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229184160|ref|ZP_04311369.1| hypothetical protein bcere0004_17240 [Bacillus cereus BGSC 6E1]
 gi|229602130|ref|YP_002866326.1| hypothetical protein BAA_1992 [Bacillus anthracis str. A0248]
 gi|254684518|ref|ZP_05148378.1| hypothetical protein BantC_11765 [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721276|ref|ZP_05183066.1| hypothetical protein BantA1_02310 [Bacillus anthracis str. A1055]
 gi|254734821|ref|ZP_05192533.1| hypothetical protein BantWNA_06590 [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741222|ref|ZP_05198910.1| hypothetical protein BantKB_09477 [Bacillus anthracis str. Kruger
           B]
 gi|254755476|ref|ZP_05207510.1| hypothetical protein BantV_23652 [Bacillus anthracis str. Vollum]
 gi|254760012|ref|ZP_05212036.1| hypothetical protein BantA9_17011 [Bacillus anthracis str.
           Australia 94]
 gi|300117530|ref|ZP_07055317.1| hypothetical protein BCSJ1_01442 [Bacillus cereus SJ1]
 gi|30256580|gb|AAP25817.1| putative membrane protein [Bacillus anthracis str. Ames]
 gi|47502366|gb|AAT31042.1| putative membrane protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49178722|gb|AAT54098.1| membrane protein, putative [Bacillus anthracis str. Sterne]
 gi|49328995|gb|AAT59641.1| conserved hypothetical protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118416607|gb|ABK85026.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|164711071|gb|EDR16635.1| putative membrane protein [Bacillus anthracis str. A0488]
 gi|167513698|gb|EDR89067.1| putative membrane protein [Bacillus anthracis str. A0193]
 gi|167531781|gb|EDR94446.1| putative membrane protein [Bacillus anthracis str. A0442]
 gi|170128933|gb|EDS97798.1| putative membrane protein [Bacillus anthracis str. A0389]
 gi|170669579|gb|EDT20321.1| putative membrane protein [Bacillus anthracis str. A0465]
 gi|172083430|gb|EDT68491.1| putative membrane protein [Bacillus anthracis str. A0174]
 gi|190562581|gb|EDV16548.1| putative membrane protein [Bacillus anthracis Tsiankovskii-I]
 gi|195990645|gb|EDX54622.1| putative membrane protein [Bacillus cereus W]
 gi|196022123|gb|EDX60811.1| putative membrane protein [Bacillus cereus 03BB108]
 gi|196027244|gb|EDX65863.1| putative membrane protein [Bacillus cereus NVH0597-99]
 gi|217066245|gb|ACJ80495.1| putative membrane protein [Bacillus cereus AH187]
 gi|221239631|gb|ACM12341.1| conserved hypothetical protein [Bacillus cereus Q1]
 gi|225790084|gb|ACO30301.1| putative membrane protein [Bacillus cereus 03BB102]
 gi|227006731|gb|ACP16474.1| putative membrane protein [Bacillus anthracis str. CDC 684]
 gi|228599275|gb|EEK56886.1| hypothetical protein bcere0004_17240 [Bacillus cereus BGSC 6E1]
 gi|228814085|gb|EEM60356.1| hypothetical protein bthur0007_17270 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228826420|gb|EEM72197.1| hypothetical protein bthur0009_17260 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228832752|gb|EEM78323.1| hypothetical protein bthur0010_17330 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228844863|gb|EEM89905.1| hypothetical protein bthur0012_17740 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229266538|gb|ACQ48175.1| putative membrane protein [Bacillus anthracis str. A0248]
 gi|298725065|gb|EFI65720.1| hypothetical protein BCSJ1_01442 [Bacillus cereus SJ1]
          Length = 337

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 57/341 (16%), Positives = 122/341 (35%), Gaps = 25/341 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +G  R++++ I+ + LY LK     +L   I+ F           K + +   +    
Sbjct: 9   RSRGFQRFLVLIILALVLYGLKSMINLILITFILTFLMDRFQRFISKKLKVNRKIVIACL 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++      L        +++ +L+ +  L  Q+           P      +     
Sbjct: 69  YIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQN-----------PPDNEIIKYALST 117

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           ++  +  K + +      G+D I +  +  G + L   LS+I  +  L     +   I  
Sbjct: 118 INGMEVSKYIEQ------GVDVIYQSIANIGKVSLQILLSLILSLFFL----LEKERIIT 167

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 E     ++++I+    +  RS         +IA+   ++   A  + G P  + 
Sbjct: 168 FTSKFKESKLKIFYEEIAYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLLV 227

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L V+  ++ +IP  G  IS   + I     G +     + ++  +   +    L P  + 
Sbjct: 228 LAVMIFLLGLIPVAGVIISLFPLCIIAYNVGGVIYVVYILVFITVIHALESYFLNPKFMS 287

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               LP   TF  L+     +G+ GL IG  +   +  +  
Sbjct: 288 AKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLD 328


>gi|290958928|ref|YP_003490110.1| integral membrane protein [Streptomyces scabiei 87.22]
 gi|260648454|emb|CBG71565.1| putative integral membrane protein [Streptomyces scabiei 87.22]
          Length = 347

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/311 (13%), Positives = 101/311 (32%), Gaps = 26/311 (8%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           P++   +       +  A +  V+V+ +    +  +    +    ++V+ +  A      
Sbjct: 54  PLHRRLVGA-GVHRSVAAGLTCVAVLGIVGGAVYVVAVALVETGDQIVASLRNA------ 106

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF---GMIFLD 162
                         ++    H     +         K     F    AS       +  +
Sbjct: 107 --------------ADDLASHFGAAGTSLDDLAAHAKELLARFGGTAASNVISGVSVVGE 152

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
                +  +  +FFF RD       L ++         + I+R   + +     G T+IA
Sbjct: 153 AVAMAVLALFLVFFFLRDSHRAVAALRAMSPRGGADLVEAIARRAFEGVEGFMRGTTLIA 212

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCL 281
           + + + +     +  VP  + LG +  + A +P        AV++ + +    +  A  +
Sbjct: 213 LIDAVCITVGLLILDVPGAIGLGALVFVGAYLPYLGAFVSGAVAVLVALADRGVVIALWV 272

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAV 340
                    +    L P +    +++        +  G    G+LG+ +  P+  A++ V
Sbjct: 273 LGIVFAVQMLEGHVLMPMIQSRTVQMHPAVVMLAITAGASVAGVLGMLLAVPLTAAVLGV 332

Query: 341 IWKESIMAIKE 351
           + +       E
Sbjct: 333 VHELRGRYAVE 343


>gi|238544544|dbj|BAH60896.1| hypothetical protein [Desulfotignum balticum]
          Length = 355

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/358 (12%), Positives = 113/358 (31%), Gaps = 20/358 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R    +PQ ++  + + + L ++        PV+++LII +    +      +      
Sbjct: 8   VRRYFSDPQVVILAVFLVVGLATVLLAGRHLVPVIASLIIAYLLEGLIQPL-QRVGAPRM 66

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV----VLANQHGIPVPRWLSDIPGG 116
               I  +    + +  L +L      +  +L+ +V      +    + +P    +I   
Sbjct: 67  LAVGIVFLVFFLVLLALLFWLLPVLTRQATQLLQEVPDMLSASQTLILSLPEKYPNIFSE 126

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
           +    +  +                     D + R      +  +   + I+ M + +FF
Sbjct: 127 VEIENVLNQIRREAGHF------------TDRMLRQTLSSVVGVITLVVYIVLMPLLVFF 174

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
           F +D   +   +             ++ + V   + +   G     +         +   
Sbjct: 175 FLKDKDQLMGWIRRHLPRERGL-ASRVWQGVDVQLGNFIRGKFWEILIVWGASYLTFIFM 233

Query: 237 GVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-K 294
           G+   + L  +  I  ++P  GA +    V++    +          +   + + ++D  
Sbjct: 234 GLSFSLLLAFLVGISVLVPYIGAAVMTFPVALVAYFQFGWTGDLAWIILAYLVIQMLDGN 293

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            L P L    + L  +     ++      G+ G+F    L  L+  +         E 
Sbjct: 294 VLVPLLFSEVVNLHPIAIIVAVLFFGGIWGVWGVFFAIPLAILLQGVLSAWPRRPDEE 351


>gi|152977617|ref|YP_001377134.1| hypothetical protein Bcer98_3955 [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152026369|gb|ABS24139.1| protein of unknown function UPF0118 [Bacillus cytotoxicus NVH
           391-98]
          Length = 347

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 2/160 (1%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +   +   +          +IAI   ++   A W+ G P  + L ++  ++ +IP  G  
Sbjct: 188 EYFGKKFARSFGKVIEAQFLIAIVNCVLSVIALWILGFPQLLGLSLMIFLLGLIPVAGVI 247

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS   + +     G+I     + +  A+   +    L P  +     LP   TF  L+  
Sbjct: 248 ISLFPLCMIAYNIGSITYVIYILIIVAVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFS 307

Query: 320 VRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKEKISS 358
              +G+ GL IG PV M L+ V+   S    K   EKI S
Sbjct: 308 EHFLGVWGLIIGIPVFMFLLDVLDVTSDEIEKGANEKIES 347


>gi|46205309|ref|ZP_00048703.2| COG0628: Predicted permease [Magnetospirillum magnetotacticum MS-1]
          Length = 323

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 1/115 (0%)

Query: 158 MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG 217
              +D+      MI+ LFFF +DG +I + L    E    A  ++I     + +     G
Sbjct: 205 SQTVDFVAGFFVMIVVLFFFLKDGPAIWEFLLRPFEGARYARGQRIGETTVRTLGGYVRG 264

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLI 271
             I+A  + + +G    + GVP  + L V+  ++A IP  GA ++    ++  L+
Sbjct: 265 TAIVAAVDAVAIGIGLAIVGVPLVLPLSVLVFLLAFIPLVGATLAGVLCALVALV 319


>gi|163740660|ref|ZP_02148054.1| hypothetical protein RG210_11172 [Phaeobacter gallaeciensis 2.10]
 gi|161386518|gb|EDQ10893.1| hypothetical protein RG210_11172 [Phaeobacter gallaeciensis 2.10]
          Length = 340

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 55/350 (15%), Positives = 125/350 (35%), Gaps = 28/350 (8%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  +    + ++L+F K   APV+ A+++G    P+               A +   
Sbjct: 12  RIMLLIVTALALGLALFFAKPVLAPVIFAVVVGIVVSPLADRLQGIGVARVIVAASLLLF 71

Query: 69  SVMCLFIVPLLF--LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           S   + ++ L    L    + ++ ++  ++         + R +  I      S+   + 
Sbjct: 72  SCAIIVLLFLSLEPLISGVVEDLPKIKQEIKSWVYMMSGLLRGIEAI------SQEIEQT 125

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +    +   +S  F       ++            ++   +   I  LFFF      I  
Sbjct: 126 VGTGAAGPDVSTGFPTLMDALWVA----------PNFGAQVFIFIGTLFFFVLTRTDIYA 175

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
              SLG+ L+ A  +         +   F  +T++  G G+         G+ S +  G+
Sbjct: 176 AAGSLGKRLYRAEHE---------VARYFAAVTLVNAGLGVATAIGLATLGINSALIWGL 226

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPI 305
              ++  I    P+       ++ +      A  +     + L +++ + + P  VG  +
Sbjct: 227 AAMLLNFILYLGPLMMITGLTFVGMTQLGGAAALMPPALFLALNLIEAQFVTPAFVGHQL 286

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            L  L  F  +V G+   G +G  +   +M  I  + + S  A +   E+
Sbjct: 287 HLSPLVVFLAIVFGLWIWGPVGAIVALPVMLWIGQLLRSSAEARRLQGEE 336


>gi|78045196|ref|YP_360599.1| putative membrane protein, AMBIGUITY [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77997311|gb|ABB16210.1| putative membrane protein, AMBIGUITY [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 351

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 107/307 (34%), Gaps = 4/307 (1%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           P+ S F  +   +      I+   ++ LF+  +       + E+  L + V     +   
Sbjct: 47  PMVSYFEKRFNLTRAIGTGISLAILLILFLTVISSFLVKLVTELYRLANYVPDMLTNIKD 106

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
              ++  I GG          L+                                 ++ +
Sbjct: 107 QITFM--IAGGNRFLGKLPPTLADSIKQNAEKLLNQVVEVGKNFFTSIFVGLAQVPEFII 164

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
            ++  +IA +FF +D     + + ++    +    + + +              I+    
Sbjct: 165 ILLIALIAAYFFSKDLPQYQRLVFNVLPEDYRQKSEYVLKEAIAAAFRFLKAQAILVGLS 224

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLW 284
            ++     +L G    + LG+I   + ++P  G  +     +  LLI+G    A  + + 
Sbjct: 225 TILTIFGLYLIGAAYPLTLGLIIGFLDLVPIVGPSLIIFPWAGILLIQGKYLMAVEILIL 284

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             + +    K +   +V   + L  L T   +  G++ MG+LG+  GP+++ +I  +   
Sbjct: 285 Y-LAISAFRKVVEAKVVAENLGLDPLATLISMYVGLKLMGVLGIAAGPIILLIIKALIDA 343

Query: 345 SIMAIKE 351
            I+   +
Sbjct: 344 EIINFHK 350


>gi|329115125|ref|ZP_08243880.1| UPF0118 membrane protein YrrI [Acetobacter pomorum DM001]
 gi|326695568|gb|EGE47254.1| UPF0118 membrane protein YrrI [Acetobacter pomorum DM001]
          Length = 345

 Score = 64.1 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/287 (11%), Positives = 90/287 (31%)

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +SVM   +V +  L     +   EL  ++   ++        L ++            H 
Sbjct: 58  LSVMLFVLVLVGALSLVVHVSGPELTVQLSHLHEALTSERDALHNMLDSNPLGHAVLDHF 117

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                  ++ +    + G        +           +++ +IIA  +F       +  
Sbjct: 118 PRFLGGNMVPDGRAGSEGGMDFAGSMTNVLTSTFGSVGTMVVIIIAGVYFALSPHLYANG 177

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  +    + +  + +       + +   G  +     G++  S   L G+P  + LG++
Sbjct: 178 ILRITPVAYRSTMRTVLLTTGHALTAWVAGQMLDMTVVGMLTWSGLSLLGMPLALPLGLV 237

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +   +P          ++ + +      A  +    A         + PF+    +++
Sbjct: 238 AGLANFVPYLGTFIGAVPALLIALSVGPREAMMVAGLYAAIQTFEGYVMSPFIQKRAVRM 297

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           P   T          +G+ G      + A++  +       +  N+E
Sbjct: 298 PPALTILSQTIFGAFLGMWGFIFASPITAVLLAVASRLSAPLPPNEE 344


>gi|291086376|ref|ZP_06355611.2| permease, PerM family [Citrobacter youngae ATCC 29220]
 gi|291068043|gb|EFE06152.1| permease, PerM family [Citrobacter youngae ATCC 29220]
          Length = 385

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 47/321 (14%), Positives = 114/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +          +A   V
Sbjct: 50  LLKLAALVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVRRP-----VAITLV 104

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L       + E ++ +   N+       +L ++            H+S  
Sbjct: 105 VVVMLIVLTALVGVLASSITEFMAMLPKYNKELTRKVLYLQEM------VPFLNLHMSPE 158

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           + L+ +    L T     +   +     + L   ++++FM+  +                
Sbjct: 159 RMLQRMDSDKLMTFTTTLMTSLSGAMASVVL-LVMTVVFMLFEV--------RHVPYKLR 209

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G ++     L G+   +  GV+  +
Sbjct: 210 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGAIVWLGLALMGIQFALMWGVLAFL 268

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  G+ IS     I  L+   I+    +     +   ++   L P ++G  + L  
Sbjct: 269 LNYVPNIGSVISAVPPMIQALLFNGIYECVLVGALFLVVHMVIGNILEPRMMGHRLGLST 328

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           L  F  L+     +G +G+ +
Sbjct: 329 LIVFLSLLVWGWLLGPVGMLL 349


>gi|145631416|ref|ZP_01787186.1| hypothetical protein CGSHi22421_06177 [Haemophilus influenzae
           R3021]
 gi|144982953|gb|EDJ90462.1| hypothetical protein CGSHi22421_06177 [Haemophilus influenzae
           R3021]
          Length = 348

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 53/346 (15%), Positives = 124/346 (35%), Gaps = 23/346 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+  +   + ++    + IIL  +        P L +L I     P+  +   ++     
Sbjct: 1   MQNNLNLHRTLLGIAAVIIILAGVKLAAEIVVPFLLSLFIAIICSPMIKAMTQRRVPH-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +LA+     ++ L    L+ L      E  + + +  +     I     LS         
Sbjct: 59  WLAITLLFVLISLVFFFLVGLINSTAREFTQSIPQYKILLSQRISDLTALSQ-------- 110

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                +L    S + + E F  +  ++F+ R    F  +  +  + ++ +I    F   +
Sbjct: 111 ---RFNLPFTLSRETIQENFDPSIIMNFVSRVLLNFSGVVSNVFVLVLVVI----FMLAE 163

Query: 181 GFSISQQLDSLG---EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             ++  +   +     H      + I R++  VI    +     ++  G+ +       G
Sbjct: 164 APTMKHKFAMVISSTPHDVAKEERHIDRVLQGVIGYLGIKSI-TSLLTGVGVFILLEACG 222

Query: 238 VPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           V   +    ++ ++  IP  G+ I+   + +  L+         + +       +V   +
Sbjct: 223 VQYAILWATLSFLLNYIPNIGSIIAAIPIIVQALLLNGFGIGFGVAIGVIAINMVVGNII 282

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            P ++G  + L  L  F  L+     +G +G+ +  P+ MAL   +
Sbjct: 283 EPKMMGQRLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMALKIAL 328


>gi|187935233|ref|YP_001886750.1| permease [Clostridium botulinum B str. Eklund 17B]
 gi|187723386|gb|ACD24607.1| permease [Clostridium botulinum B str. Eklund 17B]
          Length = 370

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 61/374 (16%), Positives = 120/374 (32%), Gaps = 22/374 (5%)

Query: 4   TMLNPQGIMRWMIMFIILVSLY-----------FLKGFFA---PVLSALIIGFTSWPIYS 49
           T+         +IM I+ + LY            +K FF+   P   ALI  +   PI  
Sbjct: 2   TINKNVKYKDILIMAIVGIVLYKIIDNYQFFFNIVKHFFSIMSPFTYALIFAYILNPIMM 61

Query: 50  SFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW 109
            F  + + S     ++    +  + I+   F     +  +  ++ +V    +    +  W
Sbjct: 62  IFEKRFKFSRGKSILVTYAIITGIIIMFFFFTIPSLVDSIASIIKEVPNYMET---IQEW 118

Query: 110 LSDIPGGMWASELWTKH-LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII 168
           ++        SEL     L     L  +         +  +  +        +      +
Sbjct: 119 INTAIKNPKLSELIIDAGLVDKIELLSIKMGNFTITILQGMLGYLLSLTGNLVKIVFGFL 178

Query: 169 FMIIALFFFYRDG--FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
             I  L    +DG    +      + +    +   K+     K+I        I +   G
Sbjct: 179 IAIYVLSD--KDGLLHGLKTITYIILKEKKASELIKVCNTYSKMIGVYIGTKAIDSAIIG 236

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           L+      +   P  + L +I AI  MIP   P     V   + I  +   A  +F+   
Sbjct: 237 LISLIGLVIVKAPYALLLSIIVAITNMIPYFGPFIGEVVGAGVCIFVSPMKALIVFILLL 296

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           +        L P L+G  + +       G++ G    G +G+ +    +A I + +   +
Sbjct: 297 LIQQFDAWYLDPKLIGAKVGVKPFWIIMGVIIGGAFWGPIGMLLASPTIATINIYYIRLV 356

Query: 347 MAIKENKEKISSNF 360
              K     +  N 
Sbjct: 357 KFYKSKNPSLFKNL 370


>gi|163736917|ref|ZP_02144335.1| hypothetical protein RGBS107_02203 [Phaeobacter gallaeciensis
           BS107]
 gi|161389521|gb|EDQ13872.1| hypothetical protein RGBS107_02203 [Phaeobacter gallaeciensis
           BS107]
          Length = 340

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 129/361 (35%), Gaps = 31/361 (8%)

Query: 1   MRETMLNPQGIMRWMIMFIILV---SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           M  +ML+ +     +++   L    +L+F K   APV+ A+++G    P+          
Sbjct: 1   MLNSMLSDRAARIMLLIVTALALGLALFFAKPVLAPVIFAVVVGIVVSPLADRLQGIGVA 60

Query: 58  SSTFLAVIATVSVMCLFIVPLLF--LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
                A +   S   + ++ L    L    + ++ ++  ++         + R +  I  
Sbjct: 61  RVIVAASLLLFSCAIIVLLFLSLEPLISGVVEDLPKIKQEIKSWVYMMSGLLRGIEAI-- 118

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
               S+   + +    +   +S  F       ++            ++   +   I  LF
Sbjct: 119 ----SQEIEQTVGTGATGPDVSTGFPTLMDALWVA----------PNFGAQVFIFIGTLF 164

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           FF      I     SLG+ L+ A  +         +   F  +T++  G G+        
Sbjct: 165 FFVLTRTDIYAAAGSLGKRLYRAEHE---------VARYFAAVTLVNAGLGVATAIGLAT 215

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-K 294
            G+ S +  G+   ++  I    P+       ++ +      A  +     + L +++ +
Sbjct: 216 LGINSALIWGLAAMLLNFILYLGPLMMITGLTFVGMTQLGGAAALMPPALFLALNLIEAQ 275

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            + P  VG  + L  L  F  +V G+   G +G  +   +M  I  + + S  A +   E
Sbjct: 276 FVTPAFVGHQLHLSPLVVFLAIVFGLWIWGPVGAIVALPVMLWIGQLLRSSAEARRLQGE 335

Query: 355 K 355
           +
Sbjct: 336 E 336


>gi|187922753|ref|YP_001894395.1| hypothetical protein Bphyt_0747 [Burkholderia phytofirmans PsJN]
 gi|187713947|gb|ACD15171.1| protein of unknown function UPF0118 [Burkholderia phytofirmans
           PsJN]
          Length = 358

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 51/343 (14%), Positives = 123/343 (35%), Gaps = 9/343 (2%)

Query: 5   MLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
               +    W+ + + + + L+ L     P L   I+ +   P  +  + ++       A
Sbjct: 9   TPVQRRAFIWLAIALGVGILLWLLSPVLTPFLLGAILAYILQPGVAWMVRRRVPR-GLAA 67

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++  +    +  + +L +      E  +L  +V +   H   V  WL   P         
Sbjct: 68  LLMMLLFTLVMTLLVLLVLAVIQKEAPQLKQQVPVFFAH---VNAWLQ--PKLAMLGLAD 122

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
           +   +  + L +            +   +    G + +    +++ + + LF+   D   
Sbjct: 123 SLDFASIRDLVMGQLEGSAQTVAVYAWTYIRTSGNVMVTVVGNVVLVPLVLFYLLYDWNR 182

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +    +     +++R + +++     G  ++     +    A  +A     + 
Sbjct: 183 MLARAQVVVPRRWLDKTLQLARDMDQMLSQYLRGQLLVMGVLAVFYAVALTIARFEIALP 242

Query: 244 LGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +G+ T +   IP  G A     A+   LL  G+ +    + +   +   +    L P LV
Sbjct: 243 VGIFTGLAVFIPYIGFATGLALALLAALLQFGDWYGFGAVAVIYGVGQILESFYLTPRLV 302

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           G  I L  L   F L+   +  G  G+ +   + A+++V  +E
Sbjct: 303 GERIGLHPLAVIFALLAFGQLFGFFGVLLALPVSAILSVAVRE 345


>gi|17227705|ref|NP_484253.1| hypothetical protein all0209 [Nostoc sp. PCC 7120]
 gi|17135187|dbj|BAB77733.1| all0209 [Nostoc sp. PCC 7120]
          Length = 373

 Score = 64.1 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 49/330 (14%), Positives = 117/330 (35%), Gaps = 19/330 (5%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           ++L  + + +       +A+++ F   +PI   F  ++            +  + + +  
Sbjct: 26  LLLQVVQYFQPLVNVFAAAVLLAFVLNYPIQ--FFQERGVKRNLAIGSVLLLAVVILVGL 83

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
            + L    + ++ ELV+ +          P W+      + A + W      P +L  L 
Sbjct: 84  GVTLVPLIIEQINELVNIL----------PYWIDSGGQQIDAFQKWAATQQLPVNLSGLV 133

Query: 138 ETFLKTNGIDF--IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              L+        +      F    +   ++++  ++   +   +G  +   L       
Sbjct: 134 TQLLEKVSSQLQSVTGKILSFAFDTIGVVVNVLLTVVLTIYMVLNGDRLWDGLYQWFPTH 193

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 K+ +I+ +   + F+G   +    GL +  A+    VP  +  G+   + ++ P
Sbjct: 194 IG---SKVRQILREDFHNYFIGQATLGAILGLTITLAFVTLRVPLALLFGLAIGLFSLFP 250

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G  I  + VS+ + ++ N +    +         +    + P ++G    L  +     
Sbjct: 251 FGTGIGISIVSLLVALQ-NFWLGVEVLGVAVAIDQVNSNFIAPRILGNLTGLNPVWVVIS 309

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           L+ G +  G+LGL I     + I  I    
Sbjct: 310 LLLGAKLGGVLGLLIAIPTASFIKDIADSW 339


>gi|170757809|ref|YP_001780772.1| putative transporter [Clostridium botulinum B1 str. Okra]
 gi|169123021|gb|ACA46857.1| putative transporter [Clostridium botulinum B1 str. Okra]
          Length = 367

 Score = 63.7 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/297 (14%), Positives = 98/297 (32%), Gaps = 2/297 (0%)

Query: 43  TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH 102
              P+   F  + +       +I  V  + + ++ L  +       + ++   +      
Sbjct: 59  ILNPLVKFFERRFKIKRGLSILICYVITLGIVVLVLSMIVPKVFQSIMDIFQNIPYYTNK 118

Query: 103 GIP-VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL 161
           G   V   L +      A         + + L     +F  + G++ I      F    +
Sbjct: 119 GYEMVNDLLVNNKELSNAINSSNVFKGNYKDLIDKVASF-TSVGLNTILSQTISFTTFMV 177

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
           +    +I  I  L    +  ++  + +  +    +     +  R V  +I+       + 
Sbjct: 178 NLVFGLIIAIYVLNDREKFTYNSKRIVFLIFREKYGEKIIEFFRTVNSMIKLYIGIKALD 237

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL 281
           ++  GL+      +   P  + + +I  +  MIP   P      ++ + +      A  +
Sbjct: 238 SLIIGLLALIGLIILKSPYALLIALIVCVTNMIPYFGPFIGMIPAVVINLFYVPVKALWV 297

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
            ++  +        L P LVG  + L       G+  G    G+ G+ +    MA+I
Sbjct: 298 LIFLFLLQQFDAWYLEPKLVGDKVGLSPFLIILGITIGGSLFGVWGMLLASPAMAVI 354


>gi|153940261|ref|YP_001390495.1| putative transporter [Clostridium botulinum F str. Langeland]
 gi|152936157|gb|ABS41655.1| putative transporter [Clostridium botulinum F str. Langeland]
 gi|295318576|gb|ADF98953.1| putative transporter [Clostridium botulinum F str. 230613]
          Length = 367

 Score = 63.7 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/297 (14%), Positives = 98/297 (32%), Gaps = 2/297 (0%)

Query: 43  TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH 102
              P+   F  + +       +I  V  + + ++ L  +       + ++   +      
Sbjct: 59  ILNPLVKFFERRFKIKRGLSILICYVITLGIVVLVLSMIVPKVFQSIMDIFQNIPYYTNK 118

Query: 103 GIP-VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL 161
           G   V   L +      A         + + L     +F  + G++ I      F    +
Sbjct: 119 GYEMVNDLLVNNKELSNAINSSNVFKGNYKDLIDKIASF-TSVGLNTILSQTISFTTFMV 177

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
           +    +I  I  L    +  ++  + +  +    +     +  R V  +I+       + 
Sbjct: 178 NLVFGLIIAIYVLNDREKFTYNSKRIVFLIFREKYGEKIIEFFRTVNSMIKLYIGIKALD 237

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL 281
           ++  GL+      +   P  + + +I  +  MIP   P      ++ + +      A  +
Sbjct: 238 SLIIGLLALIGLIILKSPYALLIALIVCVTNMIPYFGPFIGMIPAVVINLFYVPVKALWV 297

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
            ++  +        L P LVG  + L       G+  G    G+ G+ +    MA+I
Sbjct: 298 LIFLFLLQQFDAWYLEPKLVGDKVGLSPFLIILGITIGGSLFGVWGMLLASPAMAVI 354


>gi|259503909|ref|ZP_05746811.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
 gi|259168120|gb|EEW52615.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
          Length = 380

 Score = 63.7 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 83/256 (32%), Gaps = 5/256 (1%)

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           +  +V ++     H       L  +           K        +   +  L       
Sbjct: 107 IPPVVKEITSLVTHLPQTASGLQRLLNDTIQHSPLKKVDLTTYYRQFDHQ--LANYAQLV 164

Query: 149 IPRFASRFGMIF---LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +   +SR G +     +  +  I + + LF+  +DG  +   +             ++  
Sbjct: 165 LKGLSSRIGDVINAVTNITVVTITVPVMLFYMLKDGSKLGPSIQKWLSPHHAKEVDQLLG 224

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   + S   G  I  +   +     Y L   P  + LG++  +  +IP   P    A 
Sbjct: 225 KMNDTLSSYIAGQVIECLFVAVFTSLGYLLIHQPLALVLGIVAGLCNIIPYIGPYIGIAP 284

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++++ +         + +   +   I    + P ++G  +++  L     L+      G+
Sbjct: 285 ALFVSLTMAPQKLILVIIVVIVVQQIDGNVIYPNIIGKTLQIHPLTIILLLLAAGHIAGI 344

Query: 326 LGLFIGPVLMALIAVI 341
            G+ +     A++  I
Sbjct: 345 AGMILCIPFYAVLKTI 360


>gi|168182996|ref|ZP_02617660.1| putative transporter [Clostridium botulinum Bf]
 gi|237794435|ref|YP_002861987.1| putative transporter [Clostridium botulinum Ba4 str. 657]
 gi|182673805|gb|EDT85766.1| putative transporter [Clostridium botulinum Bf]
 gi|229261628|gb|ACQ52661.1| putative transporter [Clostridium botulinum Ba4 str. 657]
          Length = 367

 Score = 63.7 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/297 (14%), Positives = 98/297 (32%), Gaps = 2/297 (0%)

Query: 43  TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH 102
              P+   F  + +       +I  V  + + ++ L  +       + ++   +      
Sbjct: 59  ILNPLVKFFERRFKIKRGLSILICYVITLGIVVLVLSMIVPKVFQSIMDIFQNIPYYTNK 118

Query: 103 GIP-VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL 161
           G   V   L +      A         + + L     +F  + G++ I      F    +
Sbjct: 119 GYEMVNDLLVNNKELSNAINSSNVFKGNYKDLIDKIASF-TSVGLNTILSQTISFTTFMV 177

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
           +    +I  I  L    +  ++  + +  +    +     +  R V  +I+       + 
Sbjct: 178 NLVFGLIIAIYVLNDREKFTYNSKRVVFLIFREKYGEKIIEFFRTVNSMIKLYIGIKALD 237

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL 281
           ++  GL+      +   P  + + +I  +  MIP   P      ++ + +      A  +
Sbjct: 238 SLIIGLLALIGLIILKSPYALLIALIVCVTNMIPYFGPFIGMIPAVVINLFYVPVKALWV 297

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
            ++  +        L P LVG  + L       G+  G    G+ G+ +    MA+I
Sbjct: 298 LIFLFLLQQFDAWYLEPKLVGDKVGLSPFLIILGITIGGSLFGVWGMLLASPAMAVI 354


>gi|283785182|ref|YP_003365047.1| AI-2 transport protein TqsA [Citrobacter rodentium ICC168]
 gi|282948636|emb|CBG88227.1| AI-2 transport protein TqsA [Citrobacter rodentium ICC168]
          Length = 344

 Score = 63.7 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 49/346 (14%), Positives = 122/346 (35%), Gaps = 22/346 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILTGIRFAADIIVPFILALFIAVVLNPLVQRMVKLRVPRVLAIS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++  + VM + ++               L       N+    +P++ S +   +   E W
Sbjct: 67  ILMAIIVMVMVVL---------------LAYLGTSLNELARTLPQYRSSLVIPLKHIEPW 111

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                   S+  L +       +  +    ++          SI  +++ + F   +   
Sbjct: 112 LLRSGIGVSVDELVKYIDPNAAMTLVTSLLTQLSNAMS----SIFLLLLTVVFMLLEVPQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   L     P       +     +    +  T I+I  GLV+ +      V     
Sbjct: 168 LPTKFKHLMTR--PVEGMAAIQRAIDSVSHYLVLKTAISIVTGLVVWAMLAALEVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+ G +++A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQMLVFGGLYDALVVLAGYLVINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             + L  L  F  L+     +G +G+ +   L  ++ +  ++++  
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQTVAG 331


>gi|94496068|ref|ZP_01302647.1| hypothetical protein SKA58_15837 [Sphingomonas sp. SKA58]
 gi|94424760|gb|EAT09782.1| hypothetical protein SKA58_15837 [Sphingomonas sp. SKA58]
          Length = 360

 Score = 63.7 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/347 (13%), Positives = 107/347 (30%), Gaps = 20/347 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +    W  + I +     L      +L A+++                    +   I  +
Sbjct: 26  KRAGVWFGLAIAIALTALLAQPLMLILGAMVLATMMDGGSRLLGRILPIGRGWRLTIVLL 85

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           S +   +            + + + + V         +  W+  +      S+L      
Sbjct: 86  SAVAFLVWTFYLTGSSLAAQAQAMRTIVEAQVTR---IGGWMQQLGITATPSDL------ 136

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                       L    +  + R  +  G   +        M++   F   +     + +
Sbjct: 137 ----------KGLAQQAMSSMGRVTAALGT-AMGAITGGAMMLVLAIFLATEPKLYERGV 185

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +      A +  I+  +   +R    G  I    EG+      W+ GVP    LG++T
Sbjct: 186 AWMLPMDKRAQFYTIADKMGWTLRRLMFGRIIGMSVEGVGTWLLLWVFGVPMAGLLGILT 245

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++A +P    I    + + +   G +           +   +    + P +    + L 
Sbjct: 246 GLLAFLPNIGAIISGVLIVLVGFSGGMDTGLYAVGVYLVVQIVDGYLIVPMVAKRAVDLA 305

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                   +      G++GLF+   ++A+I V  +E   A + +++K
Sbjct: 306 PALVLAAQILFGALFGIIGLFLADPIVAMIKVYLEERSKASRSDRDK 352


>gi|149280421|ref|ZP_01886541.1| permease [Pedobacter sp. BAL39]
 gi|149228835|gb|EDM34234.1| permease [Pedobacter sp. BAL39]
          Length = 379

 Score = 63.7 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 57/346 (16%), Positives = 132/346 (38%), Gaps = 16/346 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M E  L  +  +  + + +I + L   +    P++ A  I     P++  F+ +K+    
Sbjct: 1   MTEMPLTVKRSLELLGIVLIGLVLVIGQDIIMPIIMAFFISIVLLPVF-RFLRRKKVPEA 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++  + ++    + + F      L + +        N H   V  W+  I       
Sbjct: 60  LAIILPILLLVIFVGLIIFFFSSQIALLVADFPQIKSNVNVHLKSVSAWIGRI------- 112

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                  S  + +  ++E       +       +   +  +   + ++ + I L  FY+D
Sbjct: 113 ----SDFSTTKQINFINEKSDDLLRMAGSAASGAAVTLSSIFVFVGLLPIYIYLMLFYKD 168

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              + + +    +       K+       +I++  +G+ I      ++LG    L G+  
Sbjct: 169 --ILLRFIFMWFKPDHHPKVKEAIYETEAIIKNYLVGLLIQVTYMTILLGGILLLIGIKH 226

Query: 241 HVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + +GVI AI+ +IP    +      V + L     ++    +    A   F+ +  L P
Sbjct: 227 ALLIGVIFAILNLIPYVGALIGNIIGVLLTLTSSTELWPVITVLAVIAGVQFLDNNILMP 286

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +VG  +K+  L    G++ G    G+ G+F+   ++A++ +I+  
Sbjct: 287 RIVGSKVKINALFAILGVIIGGSIAGVSGMFLSMPIIAVLKIIFDR 332


>gi|309972500|gb|ADO95701.1| Putative permease [Haemophilus influenzae R2846]
          Length = 348

 Score = 63.7 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 53/346 (15%), Positives = 124/346 (35%), Gaps = 23/346 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+  +   + ++    + IIL  +        P L +L I     P+  +   ++     
Sbjct: 1   MQNNLNLHRTLLGIAAVIIILAGVKLAAEIVVPFLLSLFIAIICSPMIKAMTQRRVPH-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +LA+     ++ L    L+ L      E  + + +  +     I     LS         
Sbjct: 59  WLAITLLFVLISLVFFFLVGLINSTAREFTQSIPQYKILLSQRINDLTALSQ-------- 110

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                +L    S + + E F  +  ++F+ R    F  +  +  + ++ +I    F   +
Sbjct: 111 ---RFNLPFTLSRETIQENFDPSIIMNFVSRVLLNFSGVVSNVFVLVLVVI----FMLAE 163

Query: 181 GFSISQQLDSLG---EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             ++  +   +     H      + I R++  VI    +     ++  G+ +       G
Sbjct: 164 APTMKHKFAMVISSTPHDAAKEERHIDRVLQGVIGYLGIKSI-TSLLTGVGVFILLEACG 222

Query: 238 VPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           V   +    ++ ++  IP  G+ I+   + +  L+         + +       +V   +
Sbjct: 223 VQYAILWATLSFLLNYIPNIGSIIAAIPIIVQALLLNGFGIGFGVAIGVIAINMVVGNII 282

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            P ++G  + L  L  F  L+     +G +G+ +  P+ MAL   +
Sbjct: 283 EPKMMGQRLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMALKIAL 328


>gi|24214038|ref|NP_711519.1| permease [Leptospira interrogans serovar Lai str. 56601]
 gi|45658233|ref|YP_002319.1| putative permease protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24194909|gb|AAN48537.1| permease [Leptospira interrogans serovar Lai str. 56601]
 gi|45601475|gb|AAS70956.1| conserved putative permease protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 355

 Score = 63.7 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 54/348 (15%), Positives = 128/348 (36%), Gaps = 22/348 (6%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +++F I+VSL+ L     P++ A +I +      ++  S          +++   +M +
Sbjct: 20  LIVIFTIVVSLWGLHLLAVPIVMAFLIFYAFNGTINNLESLGVPR-----ILSIAILMFV 74

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             VP+ F        +          +     +  W  D+    +     T +L   +  
Sbjct: 75  ISVPIYFFINSIAPPI---------VSTLNPLLKNWKQDLDDAKFKYLTVTVNLQFNEFP 125

Query: 134 KILSETF----LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              +ET     L     + +      F          +I   +  F F  +G  + + L 
Sbjct: 126 SSWNETIRPDELIKKIAELMHEQVKAFVSYIPTLIGYLIITPLFAFLFLLNGNGMYKSLI 185

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           SL  + +      ++  + + + +    + I      +V G  ++  G+P     G+   
Sbjct: 186 SLIPNRYFEMALMVTYKINEQLTNYLKSLMIQGAIICVVSGIGFYFIGLPYFYIFGLFLG 245

Query: 250 IMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTL-RPFLVGGPI 305
           +   +P   PI  +   +   L+I G+        +   + +  ++D  L +P ++ G +
Sbjct: 246 VANSVPYLGPIMGAIPPLFFALVIGGDGTTELLTSILIVVAVAQMIDNFLIQPIVISGSV 305

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L  +     +  G   +GL+G+ I   + A++ V  +    ++K++ 
Sbjct: 306 SLHPIVVVGAVTVGGAALGLVGMLIAVPIAAILKVTIQTLYSSMKDHN 353


>gi|168702667|ref|ZP_02734944.1| hypothetical protein GobsU_24281 [Gemmata obscuriglobus UQM 2246]
          Length = 357

 Score = 63.7 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/325 (12%), Positives = 98/325 (30%), Gaps = 28/325 (8%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L     P+L A+++ +   P +S    +     T  ++          +V L F+    +
Sbjct: 42  LASVLRPLLVAVLLAYVLMPYHSRLRKQVG---TPASIAILAGGTAAALVGLAFITSASV 98

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
           L +++ + ++                         L     +H   +       ++    
Sbjct: 99  LALRDDLPQLTQR---------------ADDLFVTLERGVSAHAPWVSRNDTRPMRVQAT 143

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
           + I               +    + + L F   +G  +  ++             +++  
Sbjct: 144 EQIGLVVRLIVAGVATAMIEAGVVGLYLLFLLLEGTQLPARVRRAYPKERAEQILQVAGE 203

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF--TA 264
           V   + S        +      +G+  W  GV   +   V+T +   IP    +      
Sbjct: 204 VNAAVISYLKAKVKSSFFLAAPVGAVLWATGVNFSLLWAVLTFLCNFIPYIGTVVAYSLP 263

Query: 265 VSIYLLIKGNIF----NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
           V    L  G  +     A  L +W           + P ++G  + +  L     L    
Sbjct: 264 VGFAFLWFGPSWEPFAAAALLLVWHGASAS----VIEPMILGSAVGISPLVILGSLAFWG 319

Query: 321 RTMGLLGLFIGPVLMALIAVIWKES 345
              G+ G+F+   L A++ ++ +  
Sbjct: 320 LLWGVPGMFLAVPLTAVLTIVMEHF 344


>gi|315639853|ref|ZP_07894985.1| permease [Enterococcus italicus DSM 15952]
 gi|315484387|gb|EFU74851.1| permease [Enterococcus italicus DSM 15952]
          Length = 351

 Score = 63.7 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 53/352 (15%), Positives = 111/352 (31%), Gaps = 23/352 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E  L    + R +++ +++  +Y L+     +    I  F ++            SST L
Sbjct: 5   EAFLENIKLRRIVVLLVLIGGIYILRSMLTLLFLTFIFTFLAYKSVKKLKKLIPISSTIL 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            V     ++    + +       + +   +V  +V   QH                    
Sbjct: 65  VVAIYGLIVLGMYLVVTKYVPIVIDQSIMMVDSLVRFYQHNPKNSDSFFR---------- 114

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                +  + +   +      N +  +  +   FG + +   ++ I      FFF  +  
Sbjct: 115 -----AAHEVIDQFNLLEYLKNRLTIVLDYIQSFGKVTIAAMMAFILS----FFFLIEEK 165

Query: 183 SISQQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
              +         F  +++                      IA+   ++   A       
Sbjct: 166 RTFEFSRLFLHGEFAWFFQDLHYFFVKFSNTFGVVIEAQLFIALINTVLTCLALVAMNFT 225

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              +L V+  I+++IP  G  IS   +SI     G + +   + L       +    L P
Sbjct: 226 QIPSLVVMIFILSLIPVAGVIISTIPLSIIAYSTGGMNDVVIILLVILAIHLLESYFLNP 285

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            L+    ++P   TF  L+      G+ GL +G  +   I  + K    A +
Sbjct: 286 KLMSSKTEIPIFFTFVILLFSEHYFGVWGLVMGIPVFTFIFDLLKIKNPAGR 337


>gi|229102560|ref|ZP_04233265.1| UPF0118 membrane protein [Bacillus cereus Rock3-28]
 gi|228680882|gb|EEL35054.1| UPF0118 membrane protein [Bacillus cereus Rock3-28]
          Length = 339

 Score = 63.7 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 58/341 (17%), Positives = 122/341 (35%), Gaps = 25/341 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +G  R++++ I+ + LY LK     +L   I+ F           K + +   +    
Sbjct: 9   RSRGFQRFLVLIILALVLYGLKSMINLILITFILTFLMDRFQRFISKKLKVNRKIVIACL 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++      L        +++ +L+ +  L  QH           P      +     
Sbjct: 69  YIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQH-----------PPDNEIIKYALST 117

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           ++  +  K + +      G+D I +  +  G + L   LS+I  +  L     +   I  
Sbjct: 118 INGMEVSKYIEQ------GVDVIYQSIANIGKVSLQILLSLILSLFFL----LEKDRIIT 167

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 E     ++++I+    +  RS         +IA+   ++   A  + G P  + 
Sbjct: 168 FTSKFKESKLKIFYEEIAYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLLV 227

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L V+  ++ +IP  G  IS   + I     G +     + ++  +   +    L P  + 
Sbjct: 228 LAVMIFLLGLIPVAGVIISLFPLCIIAYNVGGVMYVLYILVFITVIHALESYFLNPKFMS 287

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               LP   TF  L+     +G+ GL IG  +   +  +  
Sbjct: 288 AKTNLPVFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLD 328


>gi|325570443|ref|ZP_08146220.1| permease [Enterococcus casseliflavus ATCC 12755]
 gi|325156653|gb|EGC68830.1| permease [Enterococcus casseliflavus ATCC 12755]
          Length = 366

 Score = 63.7 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/338 (13%), Positives = 118/338 (34%), Gaps = 11/338 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I+F+  +        F PVL ++ I +   P ++    + ++ S  L     + V   ++
Sbjct: 29  ILFVFRLLEAIFSSVFLPVLISIFIFYIFLPFFNWVKKRTKKKSIALYSTLLLIVFAAYL 88

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + +  +      EM   ++++ +     I               S L         S+ I
Sbjct: 89  I-VQVIGPALAYEMGRFINQIPIIINLVIDTID----------HSYLEELFGPFIDSIDI 137

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              +      I       +    I     + +  + + L + ++DG  +   L S     
Sbjct: 138 SQASNFALQFITGATNSLTSLISIVSHSAIVLFTIPLLLVYMFKDGEKVPDFLASKTPKN 197

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +    +++     +   +   G  ++     +     + L G+ + + LG+I  ++ +IP
Sbjct: 198 YQGLMRQLCSDFHQAASAYIGGKLLVCSYVAVSSYFIFSLLGLQNALLLGLICGVLDIIP 257

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A +    +  +I  A  L +   I        + P ++   + +  +   F 
Sbjct: 258 YFGPFIGAAPAFLFALSQDIRTAIFLIVGITIIQLGESYLVSPLVMKKVLHIHPIIAVFL 317

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L+     +G +G+ +   + +++  +    +   +E K
Sbjct: 318 LLIAGNLLGFVGMIVALPVYSIVMAMSGTLLRFFQERK 355


>gi|190572447|ref|YP_001970292.1| putative transport protein [Stenotrophomonas maltophilia K279a]
 gi|190010369|emb|CAQ43977.1| putative transport protein [Stenotrophomonas maltophilia K279a]
          Length = 369

 Score = 63.7 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/333 (13%), Positives = 105/333 (31%), Gaps = 15/333 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +    +  +L+  +    PVL A+       PI           +        +  + +
Sbjct: 34  VLATLAVGYTLWAAQDIILPVLLAMFFALVGNPILRLLQKLWIPRA--------LGALLI 85

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               L       +  +   +     A Q    V R + D+   +  +    ++ +     
Sbjct: 86  LGAGLGVTGSLAVQLIGPAMEWAQEAPQQLRKVARQVQDLTKPVQQANQAAENFARVAGG 145

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
               +  +    +D   R  +R   +       +  +++ LFF           +     
Sbjct: 146 DSNHKVQVIRTQLDDPYRMLTRAPRLAASV---LAVVLLTLFFMIYGQSLQRAAIALFPN 202

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGVITAIM 251
                +   I R + + +    L +++I    GLV      L G+     +  G + A++
Sbjct: 203 RQQQRFTTDILRSIEREVSRYVLTISVINTLVGLVFAGVLMLLGIGLQEALLWGTVAALL 262

Query: 252 AMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
              P   P+   A+ + +      +   A            +  + + P ++G  +KL  
Sbjct: 263 NFAPYVGPLIGVALMLLMGFVEFRDPLQALLPAAAYLGLHTLEGQMVTPIVLGRRMKLSP 322

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L     L+      G++GL +   L+  I ++ 
Sbjct: 323 LVLILALMVFGWAWGMIGLLLAVPLLVCIKLVL 355


>gi|159046446|ref|YP_001542117.1| hypothetical protein Dshi_3908 [Dinoroseobacter shibae DFL 12]
 gi|157914205|gb|ABV95636.1| protein of unknown function UPF0118 [Dinoroseobacter shibae DFL 12]
          Length = 383

 Score = 63.7 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/334 (12%), Positives = 122/334 (36%), Gaps = 8/334 (2%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G++  +++  +  +L  +     PV+ A+ +     P+  +   +  +  ++L     + 
Sbjct: 28  GLVAALLVIAMFAALRAMAPIAIPVVIAVFVALAVLPMDRAVAERLPKPLSWLGRAFVMV 87

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            +   +   +    Y + ++   +  V     + +     L     G   +++WT  L+ 
Sbjct: 88  FLLSILATFIVGLSYCVTQIATQLPDVSERLSNVL-----LERASSGQGNTDVWTAALTQ 142

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            +++       L     ++    A             +  ++  +     +  + + +LD
Sbjct: 143 LRNMLDDQGAALADMAFNWASGVAQGVASSTGALLAGLFLVLFLVLLALSEADNWAAKLD 202

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           ++        W++++  + + +R       ++ +   +     +    +   +  G++T 
Sbjct: 203 NILTD-RDRPWRQVTTRLGQALRRFLATRAVMGLITAVAYTLWFLPFDLDLLLVWGILTF 261

Query: 250 IMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +M  IP  G+ +S    SIY  +  +   A  L     +   ++   L P + G  + + 
Sbjct: 262 LMNFIPNLGSIVSGVLPSIYAFLTLDPGTALLLAAGLVLIEQVIGNWLDPRVQGNSVAVS 321

Query: 309 FLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            L     ++      G+ G F+  P+ +A++   
Sbjct: 322 PLVILVAVLFWGWFWGIAGAFLATPITLAIMIFC 355


>gi|152996401|ref|YP_001341236.1| hypothetical protein Mmwyl1_2379 [Marinomonas sp. MWYL1]
 gi|150837325|gb|ABR71301.1| protein of unknown function UPF0118 [Marinomonas sp. MWYL1]
          Length = 345

 Score = 63.7 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 111/331 (33%), Gaps = 22/331 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M E       ++ +    II+ +L        P + ++ I     P  +S   +     T
Sbjct: 1   MSEQHKGIHWLVGFAAFVIIIAALKEASQIVVPFMLSVFIAIICAPAMASLRRR--NVPT 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +L+++  V V+ + I  +  L    +                   +P +       M + 
Sbjct: 59  WLSILLVVLVILVGISSIAVLVGASLDNFSN-------------ELPTYKKRFGEEMSSL 105

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                 L    S   +      +  +  +       G    +  L ++ +I  LF    +
Sbjct: 106 IQMINRLGLHVSYDQVKGYIDPSALMQMVANALRGLGSALTNLVLVVMIVIFILF----E 161

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              + ++L SL          K    +  V R   +   + ++  G+++    W+ GV  
Sbjct: 162 AVELPKKL-SLAFSDASKSMDKFDSFIKSVNRYLVIKTLL-SMLTGVLITFFMWVLGVDF 219

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  GV   ++  +P  G+ I+     +   ++    +A  +     +   IV   + P 
Sbjct: 220 PILWGVCAFLLNFVPNIGSIIAAVPAVLLAFVQLGSLSAGLVAGVFLVVNLIVGNVIEPR 279

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            +G  + L  L  F  L+      G +G+ +
Sbjct: 280 YMGRGLGLSTLVVFLSLLLWGWVFGPVGMLL 310


>gi|20091055|ref|NP_617130.1| permease [Methanosarcina acetivorans C2A]
 gi|19916148|gb|AAM05610.1| permease [Methanosarcina acetivorans C2A]
          Length = 357

 Score = 63.7 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/323 (12%), Positives = 100/323 (30%), Gaps = 16/323 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPI--YSSFISKKEESSTFLAVIATV 68
           +   + +    +  YF   F   +L A++I      I  ++ F+    + +     +  +
Sbjct: 22  LTTILFVLFFAILFYFQDIFIVLILGAVLILIAEKMIQFFNRFMDSFPKFNRKAVGLVLL 81

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +   L     L      +  +  L+       Q             G           LS
Sbjct: 82  TGAGLI---FLLFVGSQVQALGVLIGDFSNIQQDYAS---------GASALFSEHESELS 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 I+    L+  G             +       ++ + +    +++    I   +
Sbjct: 130 KLADSGIIKPQDLQKIGNTIFSGVTDLVSKVSYYLFTGLLIIPLMFGVYFKHHNKIGSYI 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +           +  + + + +   F    + +   GL+    ++L G+     LG++ 
Sbjct: 190 QTYAPPEHAEGITRALKRMGRELEDFFSAKMLESAVVGLICCIGFYLGGLEGWFYLGILA 249

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT-LRPFLVGGPIKL 307
             + +IP   P+      + +    +   A    +   I    +D   L PF++   + +
Sbjct: 250 GFLNIIPYLGPLLGAIPPVIVGYIDSPMTALF-AVITVIVAQTIDNLYLIPFMISEKVDI 308

Query: 308 PFLPTFFGLVGGVRTMGLLGLFI 330
             L +    +   + +G LG+ +
Sbjct: 309 NPLLSVVLTLAASKLLGPLGMVL 331


>gi|307243280|ref|ZP_07525451.1| conserved hypothetical protein [Peptostreptococcus stomatis DSM
           17678]
 gi|306493408|gb|EFM65390.1| conserved hypothetical protein [Peptostreptococcus stomatis DSM
           17678]
          Length = 386

 Score = 63.7 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 52/331 (15%), Positives = 109/331 (32%), Gaps = 3/331 (0%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKK---EESSTFLAVIATVSVMCLFIVPLLFLF 82
            LK F      A ++ F    +    +              +   ++ + + +   LF  
Sbjct: 46  ILKPFIVGFSLAYLLNFIMEFVEGKIVLNLMPKGGKRLVRYLSMIITYILVTLFVFLFFK 105

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
           +      + +V  V         +  ++      +   E     ++   +    S     
Sbjct: 106 FIFPQVAESVVKLVTDFPHIVNKIYNYIDKFISHINLPEPTRMAVNQKVNEIGKSAIDFA 165

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           TN + F   F         +  L II  I  L           + + ++          K
Sbjct: 166 TNLVPFFANFFLNIVKSVWNLVLGIIISIYILADKEGFFRLCRKFIFAIFTKDTSDNILK 225

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           ++R+   +     +G  I ++   ++      +  +P  + L  I  I  +IP   P   
Sbjct: 226 VTRLSNDIFGKFIIGKIIDSVIIAIITFIILSIVKMPYVILLTFIIGITNVIPFFGPFIG 285

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              S+ L++  +   A  L +   I   +    + P ++G  I +      F L+   + 
Sbjct: 286 AIPSVLLVLIVDPIKALWLIVIIFIIQQLDGNVIGPKILGDSIGISSFWILFSLLVAGKF 345

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            G++G+ IG  L A+I  I  E+I    + K
Sbjct: 346 FGIIGMVIGVPLFAVIYTIVAETINDRLKTK 376


>gi|228994155|ref|ZP_04154055.1| hypothetical protein bpmyx0001_48780 [Bacillus pseudomycoides DSM
           12442]
 gi|229000224|ref|ZP_04159793.1| hypothetical protein bmyco0003_47770 [Bacillus mycoides Rock3-17]
 gi|229007747|ref|ZP_04165338.1| hypothetical protein bmyco0002_46250 [Bacillus mycoides Rock1-4]
 gi|228753517|gb|EEM02964.1| hypothetical protein bmyco0002_46250 [Bacillus mycoides Rock1-4]
 gi|228759556|gb|EEM08533.1| hypothetical protein bmyco0003_47770 [Bacillus mycoides Rock3-17]
 gi|228765607|gb|EEM14261.1| hypothetical protein bpmyx0001_48780 [Bacillus pseudomycoides DSM
           12442]
          Length = 344

 Score = 63.7 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 60/156 (38%), Gaps = 1/156 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +   +   +          +IAI   ++   A W+ G P  + L ++  ++ +IP  G  
Sbjct: 188 EYFGKKFARSFGKVIEAQFLIAIVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVI 247

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS   + +     G+I     + +  A+   +    L P  +     LP   TF  L   
Sbjct: 248 ISLVPLCMIAYNIGSITYVVYILIIVAVIHALESYVLNPKFMSQKTNLPIFYTFMVLTFS 307

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
              +G+ GL IG  +   +  +   +   I+++  K
Sbjct: 308 EHFLGVWGLIIGIPIFVFLLDVLDVTSDEIEKDSAK 343


>gi|260437802|ref|ZP_05791618.1| sporulation integral membrane protein YtvI [Butyrivibrio crossotus
           DSM 2876]
 gi|292809826|gb|EFF69031.1| sporulation integral membrane protein YtvI [Butyrivibrio crossotus
           DSM 2876]
          Length = 324

 Score = 63.7 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/324 (13%), Positives = 112/324 (34%), Gaps = 34/324 (10%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I +   ++    AP + ALII        +   +K     +   ++  ++ M L  + +
Sbjct: 21  VIYIVFKYMLPVVAPFIIALIISVLVDRPVTFLENKCHIKRSIGTLVIVIAAMALLCLFV 80

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            +     + ++ + ++K+                            +    P +L +  +
Sbjct: 81  CYGGKILVKQVYDFINKI----------------------------EEYKLPFNLNMDIK 112

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
              +      +           + +       +  +   +  G  +S    S+ +++F  
Sbjct: 113 VINEKIVSGVVDNSPGYISGFTMVFT---GVAVFIMATVFISGD-MSSIRSSVKKNIFGK 168

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GG 257
               + R +  V+ +      II     ++     ++   P  + LG++   +  +P  G
Sbjct: 169 EIIYLGRRLKTVLGNYLKTELIIMAITCVICCVGLFIMKNPYALLLGIVIGFVDALPILG 228

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
               F    + L+    +  A+ + +   I  +   + L P L+G    +        + 
Sbjct: 229 TGTIFLPWVLVLVFMHRLKQASMIMILYLICYYT-RQFLEPKLMGDKFGMSPTVMLITIY 287

Query: 318 GGVRTMGLLGLFIGPVLMALIAVI 341
            G++  G++G+F GPV + LI  I
Sbjct: 288 AGLKLFGVMGVFTGPVALILIREI 311


>gi|23011708|ref|ZP_00051989.1| COG0628: Predicted permease [Magnetospirillum magnetotacticum MS-1]
          Length = 454

 Score = 63.7 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 49/132 (37%), Gaps = 2/132 (1%)

Query: 215 FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS--FTAVSIYLLIK 272
           F+   ++ +  GLV+G   W  GVPS +  GVI  I   +P    +      ++I + + 
Sbjct: 48  FIAQLVLNLAFGLVIGVGLWFIGVPSPILFGVIAGIARFVPYIGAVISAVLPLAIAVAVD 107

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
                A  + +   +   I    + P L G    +  +             G +GL +  
Sbjct: 108 PGWSMAIQVAILFVVVEPIAGHVIEPLLYGHSTGISPVAVILAATIWTFLWGPIGLLLAT 167

Query: 333 VLMALIAVIWKE 344
            L   + V+ + 
Sbjct: 168 PLTVCLVVLGRH 179


>gi|309774561|ref|ZP_07669587.1| putative permease [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917676|gb|EFP63390.1| putative permease [Erysipelotrichaceae bacterium 3_1_53]
          Length = 394

 Score = 63.7 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 81/246 (32%), Gaps = 7/246 (2%)

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI---IALFFF 177
           +   + ++  +    +    + TN I+ +   AS        +  S        +   + 
Sbjct: 136 DYRIEDITQVEQFIQMPWEKIVTNVINLLSGSASGILSSATGFVSSFAVGFTGFMFSLYL 195

Query: 178 YRDGFSISQQLDSLGEHLFPAYWK----KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
                +  +Q+  +    F           +  V ++  S   G    A    ++     
Sbjct: 196 LSGKENFIRQMRKVTAAFFGFDNSSTIFHYASRVNRIFSSFIGGQLTEACILWVLYYVFM 255

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
            L   P    +  + A+ +++P    +   +V   +++  +   +    ++  +  +  D
Sbjct: 256 RLFQFPYPELICTLIAVCSLVPVFGSMFAMSVGAIMMLSKDPLQSVWFIVFYQVLSYFED 315

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             + P +VG  + LP L     +       G+ G+ +     A + V + E +      +
Sbjct: 316 NVIYPRVVGNSVGLPGLWVLLSIFVFGDLWGVFGMVMAVPTTACLYVFFTEFVNNRLRKQ 375

Query: 354 EKISSN 359
           + I + 
Sbjct: 376 KLIVTE 381


>gi|331007495|ref|ZP_08330665.1| hypothetical protein IMCC1989_1586 [gamma proteobacterium IMCC1989]
 gi|330418700|gb|EGG93196.1| hypothetical protein IMCC1989_1586 [gamma proteobacterium IMCC1989]
          Length = 345

 Score = 63.7 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 92/259 (35%), Gaps = 14/259 (5%)

Query: 97  VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
              N     +P + + +       + W          K+  E    +  +       + F
Sbjct: 83  SSVNSFTANIPEYQARLTVLSSGLQSWLSGWGIAIDPKLWREMVNPSAALTIAGNTLTSF 142

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
           G I  D       +++ + F   +  + S +L             +        +     
Sbjct: 143 GNIMTDG----FLILLTVIFILTEEINFSDKLTQASTK--SEKTLEALSRFTDSLNKYMA 196

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNI 275
             T++++  G+++  A  + GV   +  G++  ++  IP  G+ ++     +  +++  +
Sbjct: 197 IKTLVSMATGVLVMIALAIIGVDYPILWGLLAFLLNFIPTFGSILAAVPPVLLAVVQLGV 256

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             A  + ++  +   IV   L P  +G  + L  L  F  LV         G  +GPV M
Sbjct: 257 GEAFFIAIFYVLVNVIVGSVLEPRFMGKGLDLSSLVVFLSLV-------FWGWILGPVGM 309

Query: 336 ALIAVIWKESIMAIKENKE 354
            L   +     +A++ +++
Sbjct: 310 LLSVPLTIMVKIALENSED 328


>gi|52143494|ref|YP_083335.1| hypothetical protein BCZK1740 [Bacillus cereus E33L]
 gi|51976963|gb|AAU18513.1| conserved hypothetical protein [Bacillus cereus E33L]
          Length = 337

 Score = 63.7 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 56/341 (16%), Positives = 122/341 (35%), Gaps = 25/341 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +G  R++++ I+ + LY LK     +L   I+ F           K + +   +    
Sbjct: 9   RSRGFQRFLVLIILALVLYGLKSMINLILITFILTFLMDRFQRFISKKLKVNRKIVIACL 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++      L        +++ +L+ +  L  Q+           P      +     
Sbjct: 69  YIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQN-----------PPDNEIIKYALST 117

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           ++  +  K + +      G+D I +  +  G + L   LS+I  +  L     +   I  
Sbjct: 118 INGMEVSKYIEQ------GVDVIYQSIANIGKVSLQILLSLILSLFFL----LEKERIIT 167

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 +     ++++I+    +  RS         +IA+   ++   A  + G P  + 
Sbjct: 168 FTSKFKKSKLKIFYEEIAYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLLV 227

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L V+  ++ +IP  G  IS   + I     G +     + ++  +   +    L P  + 
Sbjct: 228 LAVMIFLLGLIPVAGVIISLFPLCIIAYNVGGVIYVVYILVFITVIHALESYFLNPKFMS 287

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               LP   TF  L+     +G+ GL IG  +   +  +  
Sbjct: 288 AKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLD 328


>gi|301053487|ref|YP_003791698.1| membrane protein [Bacillus anthracis CI]
 gi|300375656|gb|ADK04560.1| hypothetical membrane protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 337

 Score = 63.7 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 57/341 (16%), Positives = 122/341 (35%), Gaps = 25/341 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +G  R++++ I+ + LY LK     +L   I+ F           K + +   +    
Sbjct: 9   RSRGFQRFLVLIILALVLYGLKSMINLILITFILTFLMDRFQRFISKKLKVNRKIVIACL 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++      L        +++ +L+ +  L  Q+           P      +     
Sbjct: 69  YIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQN-----------PPDNEIIKYALST 117

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           ++  +  K + +      G+D I +  +  G + L   LS+I  +  L     +   I  
Sbjct: 118 INGMEVSKYIEQ------GVDVIYQSIANIGKVSLQILLSLILSLFFL----LEKERIIT 167

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 E     ++++I+    +  RS         +IA+   ++   A  + G P  + 
Sbjct: 168 FTSKFKESKLKIFYEEIAYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLLV 227

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L V+  ++ +IP  G  IS   + I     G +     + ++  +   +    L P  + 
Sbjct: 228 LAVMIFLLGLIPVAGVIISLFPLCIIAYNVGGVIYFVYILVFITVIHALESYFLNPKFMS 287

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               LP   TF  L+     +G+ GL IG  +   +  +  
Sbjct: 288 AKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLD 328


>gi|228920656|ref|ZP_04084000.1| UPF0118 membrane protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228839021|gb|EEM84318.1| UPF0118 membrane protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 337

 Score = 63.7 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 56/341 (16%), Positives = 121/341 (35%), Gaps = 25/341 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +G  R++++ I+ + LY LK     +L   I+ F           K +     +    
Sbjct: 9   RSRGFQRFLVLIILALVLYGLKSMINLILITFILTFLMDRFQRFISKKLKVDRKIVIACL 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++      L        +++ +L+ +  L  Q+           P      +     
Sbjct: 69  YIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQN-----------PPDNEIVKYALST 117

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           ++  +  K + +      G+D I +  +  G + L   LS+I  +  L     +   I  
Sbjct: 118 INGMEVSKYIEQ------GVDVIYQSIANIGKVSLQILLSLILSLFFL----LEKERIIT 167

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 +     ++++I+    +  RS         +IA+   ++   A  + G P  + 
Sbjct: 168 FTSKFKDSKLKMFYEEIAYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLLV 227

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L V+  ++ +IP  G  IS   + I     G +     + ++  +   +    L P  + 
Sbjct: 228 LAVMIFLLGLIPVAGVIISLFPLCIIAYNVGGVMYVVYILVFITVIHALESYFLNPKFMS 287

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               LP   TF  L+     +G+ GL IG  +   +  +  
Sbjct: 288 AKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLD 328


>gi|218779980|ref|YP_002431298.1| hypothetical protein Dalk_2136 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218761364|gb|ACL03830.1| protein of unknown function UPF0118 [Desulfatibacillum alkenivorans
           AK-01]
          Length = 365

 Score = 63.7 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/360 (11%), Positives = 118/360 (32%), Gaps = 12/360 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +   + +PQ ++  +++   L+S+ +L     PV  +++I +    +       K     
Sbjct: 9   VDRYLSDPQMVVLVLMLITGLLSILYLGEMLMPVFVSIVIAYLLDGLVVRLQQFKIPRLA 68

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            + ++  + +  + I+ +++L      ++ + + ++      G    + L  +P      
Sbjct: 69  CVIIVFVLFLSAMVIL-VVWLLPQISKQIIQFLRQLPDMLSTGQ---KQLMHLP-----E 119

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +                               +       +   + ++ +   +FFF +D
Sbjct: 120 KYPEFISKAQVDQIFEMGNSAAAAFAKRAVSLSVASVYTLVTLVVYLVLVPFLVFFFLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   +            + +   V + + +   G     +    +  + +    +  
Sbjct: 180 KEIIIGWMLRFRPSDMGLT-RSVWHDVNRQVSNYVRGKGWEILIIWGLSFAVFKFLDLNY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK-TLRP 298
            + L + T +  + P  G  + F  V +    +  +       +     + I D   L P
Sbjct: 239 TLLLSLFTGLSVIFPYIGVTVMFFPVGLIAFFQWGVEPKALWAVASYGFIQIFDGQILAP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            L+   + L  +     ++      G+ GLF    L  L+ V+ +  +   + +  K  S
Sbjct: 299 LLLSEVVNLHPVAIIIAVLFFGGIWGVWGLFFAIPLATLVNVLLRIWLDKYEGSGRKGDS 358


>gi|296185784|ref|ZP_06854191.1| hypothetical protein CLCAR_1221 [Clostridium carboxidivorans P7]
 gi|296049612|gb|EFG89039.1| hypothetical protein CLCAR_1221 [Clostridium carboxidivorans P7]
          Length = 299

 Score = 63.7 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 107/296 (36%), Gaps = 10/296 (3%)

Query: 48  YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV--VLANQHGIP 105
            ++  +KK  S    +++  +  +   ++ L F   Y + E   L   +  +  N + I 
Sbjct: 1   MNNIFNKKGISKGISSLLTLIISLIAALLILYFFIRYALWEFNGLAKNIHNLSPNTNTIT 60

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
               ++ I   ++ S    + +    ++ I      +++    I      F  I L   +
Sbjct: 61  SQNPINSIVSEIYKSININELIKIANNMMINYTQKFQSSLYKNINDIVDAFSKILLVLLI 120

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
               +        +D      +   L    +  +  +    V K + +   G  ++A+  
Sbjct: 121 LFFLL--------KDASKFKDKFIDLFPEKYKNFLSETLYNVDKALNAYVTGQLMVALSL 172

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
            +++   Y + G+P+ +   + T I+  IP         +   + +   I+    L +  
Sbjct: 173 AIMIYIGYKIIGMPNALIWALFTFILGFIPFIGFFISMIIPSIIAVSKGIYMIIKLSIVF 232

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                +  + + P ++   +K+  L   F +V  V   G +  FI   L A++ VI
Sbjct: 233 ITVQTLKGRVVVPLIMSSTLKIHPLTDIFLVVTAVSYGGPMAAFIIVPLYAMVKVI 288


>gi|229090936|ref|ZP_04222160.1| hypothetical protein bcere0021_17540 [Bacillus cereus Rock3-42]
 gi|228692337|gb|EEL46072.1| hypothetical protein bcere0021_17540 [Bacillus cereus Rock3-42]
          Length = 337

 Score = 63.7 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 52/338 (15%), Positives = 116/338 (34%), Gaps = 19/338 (5%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +G  R++++ I+ + LY LK     +L   I+ F           K + +   +    
Sbjct: 9   RSRGFQRFLVLIILALVLYGLKSMINLILITFILTFLMDRFQRFISKKLKVNRKIVIACL 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++      L        +++ +L+ +  L  Q+  P    +      +   E+    
Sbjct: 69  YIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQN-PPDNEIIKYALSTINGMEVSKYI 127

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                 +        K +    +    S F ++  +  ++  F                +
Sbjct: 128 EQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKERIITFTF-------------KFKE 174

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
               +       + ++ +R   KVI + F    +IA+   ++   A  + G P  + L V
Sbjct: 175 SKLKVFYEEIAYFGERFARSFGKVIEAQF----LIAVVNCILTVIALIVLGFPQLLVLAV 230

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +  ++ +IP  G  IS   + I     G +     + ++  +   +    L P  +    
Sbjct: 231 MIFLLGLIPVAGVIISLFPLCIIAYNVGGVIYVVYILVFITVIHALESYFLNPKFMSAKT 290

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            LP   TF  L+     +G+ GL IG  +   +  +  
Sbjct: 291 NLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLD 328


>gi|261341969|ref|ZP_05969827.1| permease, PerM family [Enterobacter cancerogenus ATCC 35316]
 gi|288315879|gb|EFC54817.1| permease, PerM family [Enterobacter cancerogenus ATCC 35316]
          Length = 349

 Score = 63.7 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/321 (13%), Positives = 112/321 (34%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + F+ +       +A+   V V
Sbjct: 14  LLKLACLVVILAGIHAAADILVQLLLALFFAIVLNPLVTWFLRRGVSRP--VAITIVVIV 71

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           M + +  L  +    + E   ++ +        +                    + +   
Sbjct: 72  MLIVLTALFGVLAASLSEFSTMLPQYNKELTRKLVD-----------------LQRMMPF 114

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L I  E  L+    + +  +A+           SI+ +++ + F   +   +  +L  
Sbjct: 115 INLHISPERMLRRMDSEKVMTYATTLMTGLSGAMASILLLVMTVVFMLFEVRHVPYKL-R 173

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V +   L   + ++  G+++     L  V   +  GV+  +
Sbjct: 174 FALNNPQIHIAGLHRALKGVSKYLALKTLL-SLWTGVIVWLGLVLLDVQFALMWGVLAFL 232

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA +S     I   +    +    +         ++   L P ++G  + +  
Sbjct: 233 LNYVPNIGAVLSAVPPMIQAFLFNGFYECMLVGALFLAVHMVLGNILEPRMMGHRLGMST 292

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 293 MVVFLSLLVWGWLLGPVGMLL 313


>gi|291563789|emb|CBL42605.1| Predicted permease [butyrate-producing bacterium SS3/4]
          Length = 439

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 53/370 (14%), Positives = 115/370 (31%), Gaps = 49/370 (13%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSS----------------------------- 50
           +   L  ++   APV+   ++ F   P+Y+                              
Sbjct: 36  VFAFLGKVRFVLAPVIYGAVLAFLMSPVYNRCYNTVVYVHDDDKKKEDEEKKIAPKKRFK 95

Query: 51  -------FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE-----MKELVSKVVL 98
                           +   +I  V  +   I+P L+    G++       + +   +  
Sbjct: 96  SESFGNFLGKAIGTVISLAFLIVVVVSLSSMIIPQLYSSIVGIINMMPVYFQNVYDWLTE 155

Query: 99  ANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGM 158
              +  PV + + +I     +++ +   +     L      F     I+ I    S   M
Sbjct: 156 FFVNNPPVEQAILNI--YEQSAQYFQSWMET--DLMSNLSNFQNFQNIEKIVGGVSSGVM 211

Query: 159 IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS----RIVPKVIRST 214
             +    +++  +I + +      S+S Q       + P     I     + + K     
Sbjct: 212 NVITLTKNMLIGLIVMIYLLNIKESLSAQGKKFIYSVLPLKAANIVVAEFQFIKKAFSGF 271

Query: 215 FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGN 274
            +G  I ++  G++      L  +P  + + VI  +  +IP   P    A    L+   +
Sbjct: 272 IIGKLIDSLIIGILCFILMHLFKLPYELLISVIIGVTNVIPFFGPFIGAAPCAILVFLIS 331

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
                       +        L P ++G    +      F ++      G +G+ I   L
Sbjct: 332 PKQCLYFIGLILVLQQFDGNILGPKILGNSTGVSSFGVLFSILLFGGLCGFVGMIIAVPL 391

Query: 335 MALIAVIWKE 344
           MA+I  I+ +
Sbjct: 392 MAVIIHIYNQ 401


>gi|316934067|ref|YP_004109049.1| hypothetical protein Rpdx1_2731 [Rhodopseudomonas palustris DX-1]
 gi|315601781|gb|ADU44316.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           DX-1]
          Length = 382

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/343 (13%), Positives = 94/343 (27%), Gaps = 2/343 (0%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
              +L + +   G    + + ++ G     +                 +  + +  LF+ 
Sbjct: 29  FAALLYASWHFAGTLFLIFAGILFGVFLNALTELAGRVVGGPHGLRLALVCLVLSGLFVG 88

Query: 77  PLLFLFYYGMLEMKELVSKV--VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
                      + K L   +   + N  G      +      +          + P   +
Sbjct: 89  VAFLGGNTISQQAKALSGTIKMQIVNVKGFLERNGVDTSFLDLGNVGSAAHPETAPSPPR 148

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
            L       +G   I     +  +  +    +   ++     F          L  L   
Sbjct: 149 NLPTPGELASGGGAIVSQTLKLILGTIGAVGNFFIVMFLGLAFAAQPEVYRNGLVRLAPR 208

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
              A  + +      +++   L   I  I    V      L G+P    LG+   ++A I
Sbjct: 209 RHRAQAEIVVGKTGDMLKRWLLAQLITMIAVFAVTAIGLSLIGIPGAFILGIQAGLLAFI 268

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I    V +   I          FL       +    L P +    I +P    F 
Sbjct: 269 PTVGAILGGLVIVLAAIASGWIAVLSAFLLFLGVHALESYILTPLIQRQAIDIPPATLFA 328

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
             +      GL GL +   LMA+  V+         ++ +  +
Sbjct: 329 TQILLGIVFGLWGLALALPLMAIGRVVLDHLRGEEPDDGDAPA 371


>gi|126464584|ref|YP_001045697.1| hypothetical protein Rsph17029_3845 [Rhodobacter sphaeroides ATCC
           17029]
 gi|126106395|gb|ABN78925.1| protein of unknown function UPF0118 [Rhodobacter sphaeroides ATCC
           17029]
          Length = 406

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/322 (13%), Positives = 103/322 (31%), Gaps = 15/322 (4%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
             YF +    P++  L++  T  P+  +              + T     + +       
Sbjct: 68  GFYFARDVVLPLMIGLLLALTFSPVVRALQRIGIAPPITATALITALAAVIAV------- 120

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
               L    +   +  A + G  +      I     A    ++ +S     +  +   + 
Sbjct: 121 -SAFLLSGPVSDWINQAPRLGDQLRERAQTILDSFEAVRNASEQVSEITDSEDPTVQRVA 179

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA-YWK 201
                 +         I     ++++  +    F    G     +L              
Sbjct: 180 VQTPGILSSAVGSVASILTTIIVTLVLAL----FLLASGDLFYIKLIEGFPRFGDKKRAL 235

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI- 260
           +I   + + +    L +TII  G G+V+G   W  G+PS +   +   ++  +P    I 
Sbjct: 236 RIVYGIERRVSRYLLSVTIINAGLGVVIGLLMWGTGMPSPLVWAMAAFLLNFLPYIGAIA 295

Query: 261 -SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
               + ++ ++   ++  A  +         I  + + P ++G  ++L  +  F  ++  
Sbjct: 296 GVALSAAVAIVHYDHLTQALLVPALYLTATAIEGQLVTPIVLGRRLELNTVSVFVTVIFW 355

Query: 320 VRTMGLLGLFIGPVLMALIAVI 341
               G+ G  +    +  I V+
Sbjct: 356 GWLWGIPGALVAVPFLVCIKVV 377


>gi|268316229|ref|YP_003289948.1| hypothetical protein Rmar_0662 [Rhodothermus marinus DSM 4252]
 gi|262333763|gb|ACY47560.1| protein of unknown function UPF0118 [Rhodothermus marinus DSM 4252]
          Length = 372

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/317 (13%), Positives = 107/317 (33%), Gaps = 16/317 (5%)

Query: 41  GFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN 100
            +   P+                ++    +  L  +    L  +   ++ EL   + L +
Sbjct: 61  AYLLRPVVDRVQQ-LGLGRVPAILLTMSLLAGLISLVFTSLVPFLARQLAELSRLISLES 119

Query: 101 QHG--IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGM 158
             G      RWL                +     ++ L + F        +         
Sbjct: 120 LQGAVTQFERWLMRF-----------FPIQPGTLMETLRQGFETLIRERQLASTIGSMLD 168

Query: 159 IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
           +F +   +++ +    FF  +DG  + + L  L  + +      +   +   +   F  +
Sbjct: 169 LFANLFYAVLVIPFVTFFALKDGTRLRRSLLRLVPNRYFELTLAVLDKLGANVGRYFRAL 228

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN 277
            + ++    +      L G+   VA+G+ T I   IP  G  + F A ++  + +   F+
Sbjct: 229 MLQSLSVATLASVLLALVGLRFAVAVGLFTGIANTIPYFGPLMGFLAGTLVGIAQTGDFS 288

Query: 278 ATCLFLWGAIELFIVDKTL-RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
                L       I D  L +P +     +   L   F ++ G +  G++G+ +   ++ 
Sbjct: 289 MVPEVLVAMGLTQIADNVLFQPLIFSRAARAHPLIILFAVLVGAQLAGIVGMLLAIPILT 348

Query: 337 LIAVIWKESIMAIKENK 353
           ++ V  ++    ++  +
Sbjct: 349 IVRVAVEQVRWGVRNYR 365


>gi|254418458|ref|ZP_05032182.1| conserved domain protein, putative [Brevundimonas sp. BAL3]
 gi|196184635|gb|EDX79611.1| conserved domain protein, putative [Brevundimonas sp. BAL3]
          Length = 389

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/326 (13%), Positives = 94/326 (28%), Gaps = 19/326 (5%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
            ++Y+L+    P+  AL +      +  +  ++   +  +  V A V V+          
Sbjct: 40  AAVYWLRDILTPLAMALFLLIMIDGVKRTVAARTPLNDRWAGVAALVLVVLA----FFAS 95

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               +        +    +Q+  P    +                L++P + + L     
Sbjct: 96  IGIIVNGAAGFFGEASGVSQNIGPRIDQIIR-------DVYGMARLNNPPTAQELINGVD 148

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
               +  I   A                M+   F          + +    +        
Sbjct: 149 IRGYVASIAIQAQGIASGA------FFVMVYLGFLLASQIGFRRKIVTMFPQKRQRDEAI 202

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGAP 259
            +   V   +       T+      +V        G+ +      +  I+  IP  GGA 
Sbjct: 203 AVFERVRGGVEGYIWVQTVTGAMICVVAWILMRAVGLQNAEFWTFVIFIVGFIPVLGGAV 262

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                    L+   + + A  L +     LFIV   ++P + G    +  +     L   
Sbjct: 263 AGLAPPLFALVQFPSYWPALILLVGLQTILFIVGNMIQPRMQGDNQNIDPVVVLLSLAFW 322

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKES 345
            +  G++G+F+   L  +   I  E 
Sbjct: 323 GKLWGVVGMFLSTPLAVMAMAILAEF 348


>gi|126649757|ref|ZP_01721993.1| hypothetical protein BB14905_16205 [Bacillus sp. B14905]
 gi|126593476|gb|EAZ87421.1| hypothetical protein BB14905_16205 [Bacillus sp. B14905]
          Length = 323

 Score = 63.7 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 73/179 (40%), Gaps = 2/179 (1%)

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
              I    I L+    +  +I+Q++       +      I   V   +        ++ +
Sbjct: 133 LFDIFVYWIVLYMLLLELPTINQKILMPVPFHYHQKIVFIGERVKLALFGFLKAQLLVGL 192

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG-APISFTAVSIYLLIKGNIFNATCLF 282
           G   +  +A++    P  + L ++  ++  IP   + I     +IY +  G+   A  L 
Sbjct: 193 GIFALAIAAFYFLKTPFPLLLALLLVVLDFIPFLDSFILLVPWAIYQVFAGDYIYAAVLI 252

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +   +  F+V + + P ++G  I L  L TF  +  G +  G  G+ IGP+L  ++  +
Sbjct: 253 VL-TVGQFLVRRMIEPKIIGDKIGLSSLSTFIAMFIGFKIFGFSGILIGPLLFVVVLSL 310


>gi|149375123|ref|ZP_01892895.1| predicted permease [Marinobacter algicola DG893]
 gi|149360487|gb|EDM48939.1| predicted permease [Marinobacter algicola DG893]
          Length = 359

 Score = 63.3 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 75/216 (34%), Gaps = 3/216 (1%)

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
             ++  F+       +   + ++ + I +FFF +D   +   +  +     P    +I  
Sbjct: 145 TQWLVSFSLESIPDLVALLIYMVLLPILVFFFLKDRRVLLGAIARMLPSQRPM-MVRIWH 203

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTA 264
            V     +   G  +  +  G +   A+ + G+P    L ++  +  +IP  GA +    
Sbjct: 204 EVNLQCANYVRGKAVEILIVGGITYVAFKVLGMPYAALLSLMVGLSVVIPYIGAAVVTIP 263

Query: 265 VS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
           V+ I L   G       + +   +   +    L P L      L  +     ++      
Sbjct: 264 VAMIALFAFGWGSEFIWVMVVYGVIQALDGNVLVPILFSEVNNLHPVAIIVAVLFFGGIW 323

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           GL G+F    L  ++  I+    +   + +     +
Sbjct: 324 GLWGVFFAIPLATMLKAIFSAWPVKNGQAEALPKES 359


>gi|229014603|ref|ZP_04171718.1| hypothetical protein bmyco0001_50040 [Bacillus mycoides DSM 2048]
 gi|228746680|gb|EEL96568.1| hypothetical protein bmyco0001_50040 [Bacillus mycoides DSM 2048]
          Length = 317

 Score = 63.3 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 96/279 (34%), Gaps = 8/279 (2%)

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           ++    Y ML     ++         I + + +      +              ++  + 
Sbjct: 39  IIIALLYVMLVAGIAITLFKYLPVLTIQISQLIYQFNVFLRNPPDSELIKYAVNAVNHME 98

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            +     G+D + +  +  G   L   LS+I  +    FF  +   I        E    
Sbjct: 99  LSKYVGQGVDILYKSITNVGKFGLQVLLSVILSL----FFLLEKARIVAFTSKFKESRLA 154

Query: 198 AYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            ++ +I     K  RS         +IAI   ++   A W+ G P  + L ++  ++ +I
Sbjct: 155 IFYNEIEYFGKKFARSFGKVIEAQFLIAIVNCVLSVIALWILGFPQLLGLALMIFLLGLI 214

Query: 255 PG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P  G  IS   + +     G I     + +   +   +    L P  +     LP   TF
Sbjct: 215 PVAGVIISLFPLCMIAYNIGGIMYVVYIVVIVTVIHALESYVLNPKFMSQKTNLPIFYTF 274

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             L+     +G+ GL IG  +   +  +   +   ++++
Sbjct: 275 MILIFSEHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 313


>gi|300113733|ref|YP_003760308.1| hypothetical protein Nwat_1046 [Nitrosococcus watsonii C-113]
 gi|299539670|gb|ADJ27987.1| protein of unknown function UPF0118 [Nitrosococcus watsonii C-113]
          Length = 380

 Score = 63.3 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 57/341 (16%), Positives = 116/341 (34%), Gaps = 10/341 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           +   +L   Y L+  F P+L A    +   P+        +        +    V+   +
Sbjct: 31  LGIFLLWFGYQLRAIFIPLLIAFAFAYLFDPLIRWGERYCKMPRPATISLLLALVIMSSV 90

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             + +L    + +  EL+  +V   Q  + +   +  I       E W +HL       I
Sbjct: 91  SLVAWLGPEFLKQFAELLRGLVDYLQT-LAIEYDIHLIKSLRAKLENWVQHLEENPVGFI 149

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +  T     G        S            I+ +    F       +I  +L       
Sbjct: 150 VENTETLLIGTTQAVTVVSHILGAAAYVGTMILLIPFYFFIIAWRFGAIMGKLKEFMPAK 209

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY--WLAGVPSHVALGVITAIMAM 253
                  I++ + + + + F G  +IA+    +    +   +A VP  + LGV   I+  
Sbjct: 210 EKDRILIIAKEMDEAVAAFFRGRLVIALVTAGLFSLGWSPLIADVPYWLVLGVSAGILNF 269

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNA---TCLFLWGAIELFIVDK----TLRPFLVGGPIK 306
           IP  + +++ A      +            + +W ++   IV       L P++ G  + 
Sbjct: 270 IPYLSTLAWLAAIFSKGLAIGFSGGFDLWLVIIWPSLAYGIVQFLDGWLLTPWIQGRSLN 329

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           L  +     ++ G    GL GL +   + A   +++ E I+
Sbjct: 330 LGAITVVVVVLIGGTVGGLYGLLLCIPMAACAKILFTELIL 370


>gi|90407444|ref|ZP_01215628.1| permease PerM, putative [Psychromonas sp. CNPT3]
 gi|90311475|gb|EAS39576.1| permease PerM, putative [Psychromonas sp. CNPT3]
          Length = 353

 Score = 63.3 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 55/343 (16%), Positives = 115/343 (33%), Gaps = 16/343 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +P   + ++ +  +  ++YF  G   P+  AL++ +   WP+    + + + S     +I
Sbjct: 15  DPHLGVLFVSLLGLFFTIYFFGGILTPLFVALVLSYLLDWPVMH--LMRLKISRGLATLI 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWT 124
                M + I   + +    + +   L+  +  + NQ  I V    S  P  + A+ L  
Sbjct: 73  VMSGFMSIMIFMFIAVVPTVIKQGISLLHDLPAMFNQSQIFVLTLPSRYPDLIDANTL-- 130

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                   L      ++  +G   +    S   +      +  I + + + F  +D   +
Sbjct: 131 ------AGLMENLRNYVLESGGFLLSHSFSSL-LNLAALIIYAILVPLMMVFMLKDKNIL 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +Q+             ++SR +   I +   G  I  I  G      +    +   V L
Sbjct: 184 IKQMLRFLPT-HHKLIDQVSREMNMQIMNYIRGKVIEIIIVGFFTYLVFLFLDLRYSVLL 242

Query: 245 GVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            V+     +IP  G   ++     + L   G       L L   I   +    + P L  
Sbjct: 243 AVLVGFSVLIPYIGAVVVTVPVAVVALFQWGLTPEFAYLMLAYGIVQALDGNLVVPILFA 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             + L  +     ++      G  G+F    L  L+  +    
Sbjct: 303 DAVNLHPVMIIIAVLIFGGLWGFWGVFFAIPLATLVKALLNAF 345


>gi|52424483|ref|YP_087620.1| PerM protein [Mannheimia succiniciproducens MBEL55E]
 gi|52306535|gb|AAU37035.1| PerM protein [Mannheimia succiniciproducens MBEL55E]
          Length = 348

 Score = 63.3 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 65/346 (18%), Positives = 124/346 (35%), Gaps = 23/346 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M +++   Q ++ +  + IIL  +        P L +L I     PI     ++K     
Sbjct: 1   MNKSVSVNQFLIGFAALVIILAGIKMAGEIVVPFLMSLFIAIICSPIIKFMTNRKIPH-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +LA+      + L    LL L    + E  + + +                 +      +
Sbjct: 59  WLAISILFLFIVLVFFFLLGLVNSSIREFSQSIPQY---------------RVLMSERLN 103

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E+          L +  ET L+      I  F SR  + F +   +   +I+ + F   +
Sbjct: 104 EITALIQKWNLPLNLEKETILEHFDPSSIMNFVSRLLLSFSNVLSNAFVLILVVIFMLLE 163

Query: 181 GFSISQQL---DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             +  +++    S  E       K + RI+  VI S     T +++  GL         G
Sbjct: 164 APTAKRKVALALSGNEKDASKEEKHLERILQGVI-SYLGVKTAVSLLTGLCAWVLLETCG 222

Query: 238 VPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           V   V    +T +   IP  G+ I+   + +  L+         +         ++   L
Sbjct: 223 VQYAVLWATLTFLFNYIPNIGSIIAAIPIVLQALLLNGFSTGFAVMTGIIAINMLIGNFL 282

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            P L+G  + L  L  F  L+     +G +G+ +  P+ MAL  ++
Sbjct: 283 EPKLMGRTLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMALKIML 328


>gi|172035116|ref|YP_001801617.1| hypothetical protein cce_0200 [Cyanothece sp. ATCC 51142]
 gi|171696570|gb|ACB49551.1| hypothetical protein cce_0200 [Cyanothece sp. ATCC 51142]
          Length = 357

 Score = 63.3 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 79/215 (36%), Gaps = 1/215 (0%)

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               +    S      +   L++   I+   +       +   + SL    +    K   
Sbjct: 143 SSQQLLIGVSGLTRGIVGGVLNVFLAILLSGYMLSGSQKLIDGIVSLFPTPWDQKLKDQV 202

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV-PSHVALGVITAIMAMIPGGAPISFT 263
             V + +     G  +++   GL +       G+    + LG I  +  +IP   P+  +
Sbjct: 203 IPVSQRMGGYIQGRLLVSFILGLAVSLGLKFLGIGEFALGLGTIAGMTNLIPFFGPVLGS 262

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++ + +    +    + L   I   +    L P LVG  + +P L     ++ GV+ +
Sbjct: 263 IPALIVAVAQGGWLFLWVLLLFVIIQNLETYVLDPLLVGSSVNVPPLYQLLAVLSGVQLL 322

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           G++G  I P  +A   V+ +   +  K   EK +S
Sbjct: 323 GIIGALILPPWVAGAGVLLQNLYLTPKLEAEKENS 357


>gi|291562535|emb|CBL41351.1| Predicted permease [butyrate-producing bacterium SS3/4]
          Length = 392

 Score = 63.3 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 63/188 (33%), Gaps = 7/188 (3%)

Query: 164 CLSIIFMIIALFFFY-----RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
            L +    I LFF Y          +    +      F   +  +   +  V+ +     
Sbjct: 201 ALRVAVAGIVLFFIYFVAVLLTLQEMDDIREKRSRSAFRREFLVVGERIASVVGAWLKTQ 260

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFN 277
             I      V      + G P     G    I+  +P  GA        + LL +     
Sbjct: 261 AFILFLTSAVCIFGLAVIGNPYSFLFGCGIGILDALPVLGAGTVLIPWGVALLFQKAWKK 320

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           A  +F    +  F+  +     L+G  + L  L +   +  G++  GL GL +GPV + L
Sbjct: 321 AAVIFGIYVVCYFL-RQISEARLMGKQVGLSPLGSLVSMYVGLKLFGLSGLILGPVGVLL 379

Query: 338 IAVIWKES 345
           I  + +  
Sbjct: 380 IGDLVRMY 387


>gi|260425662|ref|ZP_05779642.1| putative transporter permease [Citreicella sp. SE45]
 gi|260423602|gb|EEX16852.1| putative transporter permease [Citreicella sp. SE45]
          Length = 345

 Score = 63.3 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 53/343 (15%), Positives = 113/343 (32%), Gaps = 18/343 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M  PQ      ++ ++   L+  K    PVL ALI  +    +      +        A+
Sbjct: 1   MNLPQITYLTALLIMLGYILHIGKPVILPVLIALIALYILSNVTDRL-GRVPVIGRLPAL 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  + V+  F V  +  F Y                Q    +P + S+I   +  +    
Sbjct: 60  LRRLIVLLAFTVLTVLSFAYLAD----------TFTQVAAALPGYESNIDALVLRAAHVF 109

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                P   K+ S T  +     +I             +  ++  + +  FF   +   +
Sbjct: 110 GIEDQPTWAKVRSATIDRFQVQSYIGPVLLS----LRGFGGTLFLVTLYAFFMMAERAVM 165

Query: 185 SQQL-DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +++L ++ G+         +   +   +       T++ I  GL+      + G+   + 
Sbjct: 166 ARKLANAFGDPERETRTIALFERINTRVGDYLSVKTVVNIILGLLSYGVLLIFGIDFALF 225

Query: 244 LGVITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             ++  ++  IP    +      V + L   G+   A+ + +   +    V   L P ++
Sbjct: 226 WAILIGLLNYIPYIGSLIAVIFPVLLSLAQTGSYSAASMVAVGLTVAQMFVAGYLEPRMM 285

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                L      F L       GL G  +   L A + ++  E
Sbjct: 286 SRTFNLSPFVVLFALAFWGALWGLPGAVLAVPLTASMIIVLAE 328


>gi|157737199|ref|YP_001489882.1| putative permease [Arcobacter butzleri RM4018]
 gi|157699053|gb|ABV67213.1| putative permease [Arcobacter butzleri RM4018]
          Length = 361

 Score = 63.3 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 104/288 (36%), Gaps = 22/288 (7%)

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
             +A+  ++ ++  F++ +       M+E+  +VS++       I     ++ I      
Sbjct: 66  NIIAIPLSLFIIIYFMIKVGAFITSSMIELSSIVSQLDSKINIVIEKISIMTSIDLKDPL 125

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            + + +              F  ++ ++ I    S      +   L ++F++I   FF +
Sbjct: 126 EKFFQE--------------FNLSSALNKIFTAFSSIFSNLVQIFLYVLFLLIDQQFFNQ 171

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
              ++        +       + I   V K +R+  L  TI+++  G +         + 
Sbjct: 172 KLNAL------FSKEENRQKAEHILTSVSKGVRTYILITTIVSLVTGFLTFIICQYFSLQ 225

Query: 240 SHVALGVITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
             +  G I  I+  IP    I          L+   +  +   LF    I  F+V   + 
Sbjct: 226 GAILWGFIAFILNFIPTIGSIIAVLIPTIFALIQFTDYSDIVGLFTALVIIQFVVGNIIY 285

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           P L+G  + +        LV      G +G+F+   +M ++ +I  + 
Sbjct: 286 PKLMGNKLNISQFVVILSLVIWGAMWGTIGMFLAVPIMMILLIILSQF 333


>gi|146283129|ref|YP_001173282.1| PerM family membrane protein [Pseudomonas stutzeri A1501]
 gi|145571334|gb|ABP80440.1| membrane protein, PerM family [Pseudomonas stutzeri A1501]
          Length = 276

 Score = 63.3 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 67/186 (36%), Gaps = 3/186 (1%)

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
           + ++ + I +FFF +D   IS  +             ++S+ +   I +   G  I  + 
Sbjct: 82  IYLVLVPILVFFFLKDREQISNWIKGYLPRERGL-ITQVSQEMNLQIANYIRGKAIEILI 140

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATC-LF 282
             +V  + +   G+     + ++  +  ++P  GA +    +++  + +  + +    L 
Sbjct: 141 CAVVSYAVFASLGLNYAALMAMLVGVSVVVPYIGATVVTIPIALIGIFQWGLGDQFFYLM 200

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +  AI   +    L P L    + L  +     ++      G  G+F    L  L   + 
Sbjct: 201 VAYAIIQTLDGNVLVPLLFSEAVNLHPVAIICAVLLFGGLWGFWGVFFAIPLATLFKAVL 260

Query: 343 KESIMA 348
                 
Sbjct: 261 YAWPRE 266


>gi|229155534|ref|ZP_04283642.1| UPF0118 membrane protein [Bacillus cereus ATCC 4342]
 gi|228627852|gb|EEK84571.1| UPF0118 membrane protein [Bacillus cereus ATCC 4342]
          Length = 337

 Score = 63.3 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 57/341 (16%), Positives = 122/341 (35%), Gaps = 25/341 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +G  R++++ I+ + LY LK     +L   I+ F           K   +   +    
Sbjct: 9   RSRGFQRFLVLIILALVLYGLKSMINLILITFILTFLMDRFQRFISKKLNVNRKIVIACL 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++      L        +++ +L+ +  L  Q+           P      +     
Sbjct: 69  YIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQN-----------PPDNEIIKYALST 117

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           ++  +  K + +      G+D I +  +  G + L   LS+I  +  L     +   I+ 
Sbjct: 118 INGMEVSKYIEQ------GVDVIYQSIANIGKVSLQILLSLILSLFFL----LEKERITT 167

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 E     ++++I+    +  RS         +IA+   ++   A  + G P  + 
Sbjct: 168 FTSKFKESKLKIFYEEIAYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLLV 227

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L V+  ++ +IP  G  IS   + I     G +     + ++  +   +    L P  + 
Sbjct: 228 LAVMIFLLGLIPVAGVIISLFPLCIIAYNVGGVIYVVYILMFITVIHALESYFLNPKFMS 287

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               LP   TF  L+     +G+ GL IG  +   +  +  
Sbjct: 288 AKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLD 328


>gi|228474247|ref|ZP_04058982.1| putative membrane protein [Staphylococcus hominis SK119]
 gi|314936782|ref|ZP_07844129.1| putative membrane protein [Staphylococcus hominis subsp. hominis
           C80]
 gi|228271606|gb|EEK12953.1| putative membrane protein [Staphylococcus hominis SK119]
 gi|313655401|gb|EFS19146.1| putative membrane protein [Staphylococcus hominis subsp. hominis
           C80]
          Length = 361

 Score = 63.3 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 82/240 (34%), Gaps = 4/240 (1%)

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFG--MIFLDYCLSIIFMIIALFFFYRD 180
             +    P  +     + +K+         A+        +     +I +   L +  +D
Sbjct: 120 LNQMDKLPSDVTAKINSAMKSISDSLTGILANSITYITSLISTIFLLIMVPFFLIYMLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                  +    +     +   + + +   ++S   G   ++   G++L   Y L G+P 
Sbjct: 180 HEKFIPAIGKFFKGERKVFVVDLLKDLNYTLKSYIQGQVTVSFILGIILYIGYSLIGLPY 239

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
              L +   +  +IP  G  +SF   +I  +I G       + +   I   +    + P 
Sbjct: 240 TPLLVLFAGVANLIPFLGPWLSFAPAAILGIIDG-PSTFIWVCVVTLIAQQLEGNVITPN 298

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           ++G  + +  L     ++      G   + I   L A++  I +      +   +K +S+
Sbjct: 299 VMGKSLSIHPLTIIVVILAAGDLGGFTLILIAVPLYAVLKTIARNVFKYRQRIIDKANSD 358


>gi|154245176|ref|YP_001416134.1| hypothetical protein Xaut_1228 [Xanthobacter autotrophicus Py2]
 gi|154159261|gb|ABS66477.1| protein of unknown function UPF0118 [Xanthobacter autotrophicus
           Py2]
          Length = 338

 Score = 63.3 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 53/328 (16%), Positives = 102/328 (31%), Gaps = 25/328 (7%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             ++  +LY       PV  A+ +    +P+ S    +  +    LAV+AT+ +    + 
Sbjct: 10  AILVFAALYVADTLIVPVAFAVFVIAVVYPLQSVLEKRLPK---LLAVLATLVITLAVVG 66

Query: 77  PLLFLFYYGMLEMKELV-SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            +  +  +G   +   V                WL     G   + LW +H         
Sbjct: 67  GVSSVVVWGFSHVATWVFQNTARFQVLYGQAATWLEG--HGFVLAGLWAEHFD------- 117

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                     + ++ R               ++F  + +     +  +   Q+  LG   
Sbjct: 118 ----------VRWLLRVFQDISGRLQGLASFLVFTFVYVLLGLLEVDAAKSQVLRLGRTG 167

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
              +           ++      T+++I  G V+      AG+   +A G I   M  IP
Sbjct: 168 RAPHLPAALADTAAKLQKYMAVRTLMSIATGAVVWVFTLTAGLELAIAWGAIAFAMNYIP 227

Query: 256 GGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
              P           L    +   A  +F    +  F+    L P L G  + +      
Sbjct: 228 FIGPFVATLLPALFALAQFESWEMALFVFACLNVIQFLSGSYLEPRLAGKALAVSPFLVL 287

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           F +       G+ G FIG  ++  +  I
Sbjct: 288 FSVFFWAFLWGIAGAFIGVPILIAVLTI 315


>gi|329904575|ref|ZP_08273875.1| hypothetical protein IMCC9480_2159 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547902|gb|EGF32653.1| hypothetical protein IMCC9480_2159 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 354

 Score = 63.3 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 53/330 (16%), Positives = 122/330 (36%), Gaps = 13/330 (3%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +++   L   Y ++     V+ A+   +  +P+       K           TVS+  +F
Sbjct: 16  LLVAFFLFVAYSVRSTLLVVVFAIFFSYLLYPLVGLIERFKPLRVPR-----TVSIAIVF 70

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           I  +L     G L    +  + +  +Q    +       P  + A       L   ++  
Sbjct: 71  IFAVLVFGAAGALFGSTITEEAMRLSQQLPTLLD-----PANISARIPLPGFLEAQRAQI 125

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI---IALFFFYRDGFSISQQLDSL 191
           +   T    +G       A R GM  +    ++I++I   +  F   ++   +  +  S 
Sbjct: 126 LAFVTEQVQHGTGQALPMAQRLGMEVMHVATNLIYLILIPVLSFLLIKEAPLLRAEFLSS 185

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                   W+ I   +  ++      + ++++   +V    +   GVP  + L  +  ++
Sbjct: 186 LGAASAPLWRGILEDLDVLLSKYVRALLLLSMATFVVYSLVFSALGVPYSLLLAGVAGLL 245

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP   P+S   + + +       +   L ++        D  L P L+   +++  L 
Sbjct: 246 EVIPFVGPLSAVLIILCVSAFSGFPHLLWLLVFIIAYRMFQDYVLSPMLMSEGVEVSPLL 305

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
              GL+ G    G++G+F+   ++A I ++
Sbjct: 306 VIVGLLAGDELAGVIGIFLSVPVLAAIKIL 335


>gi|209963738|ref|YP_002296653.1| hypothetical protein RC1_0400 [Rhodospirillum centenum SW]
 gi|209957204|gb|ACI97840.1| conserved hypothetical protein [Rhodospirillum centenum SW]
          Length = 391

 Score = 63.3 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/342 (12%), Positives = 102/342 (29%), Gaps = 9/342 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  +++  +  +L+        +  A++       +                VI  +
Sbjct: 31  RRVLIALLLVGLAATLWLASHALLLLFGAILFAVAIRGLAGLLRRVLPVGEETSVVIVLL 90

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP------RWLSDIPGGMWASEL 122
            ++ L              +  ++  +V  + Q            + L  + GG+  +  
Sbjct: 91  ILLALAGGVGFLFGSQISQQFSKVAQQVPDSLQKLEDTLRSTGWGQQLLALTGGVPLTGD 150

Query: 123 WTKHLSHPQSLKILSETFLKTNGID---FIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
             +                  +G     ++ R A    +        ++ ++    +   
Sbjct: 151 GGQGGGQGGGQGGAGAAPDGGSGGAGLGWLVRQAGSVAVAITGALGDLLLVLFGAVYLAF 210

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
                   ++ L          +        +     GM +  +  G +     WL GVP
Sbjct: 211 QPGLYRAGIEKLVPKDRTDQIVRALDATGGALWKWSAGMLVEMVLVGALTMVGLWLLGVP 270

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + +ALG+I   +  IP   PI     +I L    +   A    L+      +    + P 
Sbjct: 271 APLALGLIAGTLEFIPIVGPILAAIPAILLAFTVSPDLALWTALFYVALQQVEGNLILPL 330

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +    + LP + + F L+      G +G+ +   L      +
Sbjct: 331 IQRRAVALPPVVSLFALLVFGSLFGAIGVLLAVPLAVTAMTL 372


>gi|310659688|ref|YP_003937409.1| permease [Clostridium sticklandii DSM 519]
 gi|308826466|emb|CBH22504.1| Permease [Clostridium sticklandii]
          Length = 368

 Score = 63.3 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 48/334 (14%), Positives = 109/334 (32%), Gaps = 6/334 (1%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           L  L    +P   A    +   P+  +        +     I+ + V  LF+  L     
Sbjct: 34  LAILWAILSPFFWAFATAYILNPLMVALEKLDNRITRP---ISLIIVYILFVGILTLAIT 90

Query: 84  YGMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                + + +++++    + I     W+S         E    +     +L  +    + 
Sbjct: 91  IVTPVIVKNITEIIEKLPNYIDDTEKWISRQVLDYDLLEQLGINTYIFNNLDSIFNGAVD 150

Query: 143 TNGIDFIPRFASRFG--MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
              +      AS  G         L ++  +  L    +    I + L +          
Sbjct: 151 FLNLTLTGVVASIIGITSGVAKMLLGLVISVYLLADKEKFIRGIKKNLYAFMGREHADKT 210

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
                 V ++  + F+G  I ++  G++      L  V   + L ++  I  MIP   P 
Sbjct: 211 IDFGNEVNRIFTNFFVGKLIDSMIIGILCFIGLSLLKVRFALLLSIVVGIFNMIPYFGPF 270

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
                +I + +  +   A  + L+           L P ++G  + +        ++ G 
Sbjct: 271 IGAVPAIVITLFYSPIQALWVTLFIFALQQFDGIILGPKILGDKVGVSPFYIILAIMIGG 330

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
              G +G+ +G  ++    V W + ++ + + K 
Sbjct: 331 GFFGPMGMLMGVPVLKSFFVFWDKILVTLLKKKN 364


>gi|296447406|ref|ZP_06889332.1| protein of unknown function UPF0118 [Methylosinus trichosporium
           OB3b]
 gi|296255109|gb|EFH02210.1| protein of unknown function UPF0118 [Methylosinus trichosporium
           OB3b]
          Length = 360

 Score = 63.3 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 75/197 (38%), Gaps = 1/197 (0%)

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
           SR   +  +  + ++ MI    +         + L  L    +    ++    V + +R 
Sbjct: 140 SRLFSVSANVVVGLVVMIFGGIYLAAQPALYREGLSRLFPREWRGEVEETIDTVARALRL 199

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
              G  I  +  G + G A WL G+PS +ALGV+  +   +P   PI     +I + +  
Sbjct: 200 WLFGQLIEMVIIGAMSGVAVWLIGLPSALALGVVAGVAEFVPYLGPIVAAVPAILVAVTL 259

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG-LFIGP 332
           +   A   F        +  + + P +    + +P       +V      G++G +F  P
Sbjct: 260 SPATALWTFFAYVAIHQLEGQLVMPLIQRRMVFIPPAVMLLSIVAIGYAFGVVGAMFAAP 319

Query: 333 VLMALIAVIWKESIMAI 349
           + + +  ++ K  +   
Sbjct: 320 LTVIIFVLVSKLYVRDA 336


>gi|68248943|ref|YP_248055.1| hypothetical protein NTHI0457 [Haemophilus influenzae 86-028NP]
 gi|145628691|ref|ZP_01784491.1| molybdenum cofactor biosynthesis protein [Haemophilus influenzae
           22.1-21]
 gi|145638751|ref|ZP_01794360.1| hypothetical protein CGSHiII_08551 [Haemophilus influenzae PittII]
 gi|319775792|ref|YP_004138280.1| hypothetical protein HICON_11360 [Haemophilus influenzae F3047]
 gi|319896671|ref|YP_004134864.1| hypothetical protein HIBPF02880 [Haemophilus influenzae F3031]
 gi|329123634|ref|ZP_08252194.1| PerM family permease [Haemophilus aegyptius ATCC 11116]
 gi|68057142|gb|AAX87395.1| conserved hypothetical protein [Haemophilus influenzae 86-028NP]
 gi|144979161|gb|EDJ88847.1| molybdenum cofactor biosynthesis protein [Haemophilus influenzae
           22.1-21]
 gi|145272346|gb|EDK12254.1| hypothetical protein CGSHiII_08551 [Haemophilus influenzae PittII]
 gi|309750241|gb|ADO80225.1| Putative permease [Haemophilus influenzae R2866]
 gi|317432173|emb|CBY80524.1| conserved hypothetical protein [Haemophilus influenzae F3031]
 gi|317450383|emb|CBY86599.1| conserved hypothetical protein [Haemophilus influenzae F3047]
 gi|327469833|gb|EGF15298.1| PerM family permease [Haemophilus aegyptius ATCC 11116]
          Length = 348

 Score = 63.3 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 55/346 (15%), Positives = 122/346 (35%), Gaps = 23/346 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+  +   + ++    + IIL  +        P L +L I     PI  +   ++     
Sbjct: 1   MQNNLNLHRTLLGIAAVIIILAGVKLAAEIVVPFLLSLFIAIICSPIIKAMTQRRVPH-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +LA+     ++ L    L+ L      E               IP  + L          
Sbjct: 59  WLAITLLFVLISLVFFFLVGLINSTAREF-----------TQSIPQYKVLLSQRVSDLTG 107

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L   +L    S + + E F  +  ++F+ R    F  +  +  + ++ +I    F   +
Sbjct: 108 LLQRFNLPFTLSRETIQENFDPSIIMNFVSRVLLNFSGVVSNVFVLVLVVI----FMLAE 163

Query: 181 GFSISQQLDSLG---EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             ++  +   +     H      + I R++  VI    +     ++  G+ +       G
Sbjct: 164 APTMKHKFAMVISSTPHDAAKEERHIDRVLQGVIGYLGIKSI-TSLLTGVGVFILLEACG 222

Query: 238 VPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           V   +    ++ ++  IP  G+ I+   + +  L+         + +       +V   +
Sbjct: 223 VQYAILWATLSFLLNYIPNIGSIIAAIPIIVQALLLNGFGIGFGVAIGVIAINMVVGNII 282

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            P ++G  + L  L  F  L+     +G +G+ +  P+ MAL   +
Sbjct: 283 EPKMMGQRLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMALKIAL 328


>gi|229087925|ref|ZP_04220036.1| hypothetical protein bcere0022_44800 [Bacillus cereus Rock3-44]
 gi|228695393|gb|EEL48267.1| hypothetical protein bcere0022_44800 [Bacillus cereus Rock3-44]
          Length = 342

 Score = 63.3 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 2/143 (1%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +   +   +          +IAI   ++   A W+ G P  + L ++  ++ +IP  G  
Sbjct: 188 EYFGKKFARSFGKVIEAQFLIAIVNCVLSVIALWVLGFPQLLGLALMIFLLGLIPVAGVI 247

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS   + +     G+I     + +  A+   +    L P  +     LP   TF  L+  
Sbjct: 248 ISLVPLCMIAYNIGSITYVVYILIIVAVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFS 307

Query: 320 VRTMGLLGLFIG-PVLMALIAVI 341
              +G+ GL IG PV M L+ V+
Sbjct: 308 EHFLGVWGLIIGIPVFMFLLDVL 330


>gi|325849467|ref|ZP_08170762.1| putative sporulation integral membrane protein YtvI [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480123|gb|EGC83197.1| putative sporulation integral membrane protein YtvI [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 386

 Score = 63.3 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/321 (14%), Positives = 114/321 (35%), Gaps = 5/321 (1%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            P++ AL+I     P               ++ +    ++ L +  L++   + + ++  
Sbjct: 36  MPIILALVIVGLLAPSIRKIDHILPIKHKAVSYLLGTILLLLLLFFLVWFVQFIVNQVSG 95

Query: 92  LVSKVVL-ANQHGIPVPRWLSDIPGGMWASELWTKH-LSHPQSLKILSETFLKTNGIDFI 149
           LV  ++   ++    V  W++D+   +     +  + +             L+ N I+  
Sbjct: 96  LVGNIISNWDKIVSSVNTWINDVNSQINLMPDYVSNTIRSGLKSLYEWLGSLQKNAINIT 155

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
             F   F     +    +I  ++A +    D  ++  +   L           I  +   
Sbjct: 156 FGFTQAFINTSNEIIFFVITFVVAFYIILGDMQNVYDKYHLLIPEKSKNNLSLIRAVFKN 215

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIY 268
              +       +A    +++    +  G    + + +I   + ++P  G  I     SI 
Sbjct: 216 STWNYIKSQLKLAFLCTIIMAIFLFFIGQQYFMPIALILGFVDLLPMIGPIIVLLPWSII 275

Query: 269 -LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            LLI  N   +  L +       +  + + P ++G    +  + +   L  G++  G++G
Sbjct: 276 ELLIFDNTIKSLGLLIVLTAWTGL-RQVIAPKVIGSSADIHPILSVIALYAGLKLFGVMG 334

Query: 328 LFIGPVLMALIAVIWKESIMA 348
             + PV+   I  I++  I+ 
Sbjct: 335 AILLPVVFIFIVGIYRSGIID 355


>gi|300173317|ref|YP_003772483.1| integral membrane protein [Leuconostoc gasicomitatum LMG 18811]
 gi|299887696|emb|CBL91664.1| Integral membrane protein [Leuconostoc gasicomitatum LMG 18811]
          Length = 332

 Score = 63.3 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 45/341 (13%), Positives = 111/341 (32%), Gaps = 27/341 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
               + R+ ++ +I+  + FLK F + +L  +I  + +        +  + S      + 
Sbjct: 8   RHSQLYRYFVLAVIIALIVFLKQFMSLLLLTIIFSYLAINAGKRVSAVLKTSRAISIALV 67

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + V+ L ++ +       M ++K +++     +                      W  +
Sbjct: 68  YILVITLIVLAINHGTTTVMHQVKSMMALATDTS----------------------WDTN 105

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
               +  K +       N    I +  S            ++  ++  F F      +  
Sbjct: 106 GFLKEVYKNMHHYTNTLNTDQLISKGISHLNQ-VGHVLYELVLALLFSFIFSMTYPQLRA 164

Query: 187 QLDSLGEHLFPAYWKKI---SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                    +  ++ +          ++   F    +I +    V+ +       P  + 
Sbjct: 165 WSLHFLHSPYHKFFGEFYIIIHRFIIILGRLFEVQLMICVINTAVMVAVLAFLQFPYLLG 224

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
             ++  I+ +IP  G  IS   ++I   I GN      + +  A   F+    L P  + 
Sbjct: 225 FAILIFILGLIPVFGVIISLVPLTITAFIIGNWHTVLIILVAVACVHFLESYFLHPHFMS 284

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               +P L     L+   +  G+ GL +G  ++  +   ++
Sbjct: 285 QRTHMPILVILLNLIIMEKLFGVWGLVVGLPILTFLLDFFR 325


>gi|302538382|ref|ZP_07290724.1| predicted protein [Streptomyces sp. C]
 gi|302447277|gb|EFL19093.1| predicted protein [Streptomyces sp. C]
          Length = 369

 Score = 63.3 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/308 (14%), Positives = 95/308 (30%), Gaps = 19/308 (6%)

Query: 13  RWMIMFIILVSLYFLKGFF----APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           R +++ + + +++ L G F      +   L++     P             +    +  V
Sbjct: 17  RLLVVGVAVYAVFSLLGRFHEIGVALFLGLVVTALLSPPTRGLARILP--RSAAVAVTLV 74

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               L +  L  +      E   LV +        + + +WL   P  +    L      
Sbjct: 75  GSTVLLLGILALVGEAVAGESATLVREFREG---LVSIEKWLERPPFRLDPGAL------ 125

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               L+     +L T+    +    S  G   +     +   + +  FF   G       
Sbjct: 126 --TGLQAKIGEYLSTHRSTLLSTAVSGAGH-VVQVLTVLALAVFSSVFFLHGGGRQWAWF 182

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +                  +       G+ ++A    +++G A +  GVP  V L ++ 
Sbjct: 183 CAQLPERARGRTALAGTAAWRTFTGYTHGIVLVAGTNAVLVGVALYFLGVPLAVPLALLE 242

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
              A +P  G+P++    ++  L       A  +     +   I    L P ++   ++L
Sbjct: 243 FFAAFVPLVGSPVALAVAAVVALAARGPVIAAVVIALIVVIGQIEGHLLHPLVMSWAVRL 302

Query: 308 PFLPTFFG 315
             L     
Sbjct: 303 HPLVVAVS 310


>gi|226954495|ref|ZP_03824959.1| conserved hypothetical protein [Acinetobacter sp. ATCC 27244]
 gi|226834766|gb|EEH67149.1| conserved hypothetical protein [Acinetobacter sp. ATCC 27244]
          Length = 358

 Score = 63.3 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/335 (14%), Positives = 107/335 (31%), Gaps = 20/335 (5%)

Query: 16  IMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           I+  +++  + LK   GF  P+L A I  +    +    +      ST       + ++ 
Sbjct: 19  ILLFLILFGWLLKIGQGFLLPILVATIAMYILITLSHWLVKFPVLKSTPEWFRRILVLIS 78

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
             +V         M+++  LV  +    +    +P + ++I         +      P  
Sbjct: 79  FIVV---------MVQLISLV--ITTGQKILAKMPIYEANIEQVFLHVNAYLGWSDSPDW 127

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                    + N    I    + F  +   + + I++ +    F   +     ++L    
Sbjct: 128 QIFREMLMSQINLQSLITSTLTSFSALTGMFVVIIVYAL----FLLNERDQFVKKLMIAF 183

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                   + +   + K I    +  T+I +    +     W  GV   +   +I  +  
Sbjct: 184 PDGKTEQTRLLITDINKKISEYLVVKTLINLILATICFVILWACGVEYALFWALIIGLFN 243

Query: 253 MIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            IP    +      V + L   G++     + +   +    V   L P ++G  I L   
Sbjct: 244 YIPYVGSLFGVIFPVLMTLAQTGSLKLTILVAILLTVAQMFVGNFLEPRMIGKQINLSPF 303

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
                L       G+ G  +   L ++  ++ +  
Sbjct: 304 VVLLSLSLWSSLWGIAGAILAIPLTSIFVIVLEAF 338


>gi|115467678|ref|NP_001057438.1| Os06g0297700 [Oryza sativa Japonica Group]
 gi|53791981|dbj|BAD54434.1| unknown protein [Oryza sativa Japonica Group]
 gi|113595478|dbj|BAF19352.1| Os06g0297700 [Oryza sativa Japonica Group]
          Length = 648

 Score = 63.3 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 79/203 (38%), Gaps = 9/203 (4%)

Query: 160 FLDYCLSIIFMIIALFFFY-RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
            L++   ++  +  L++    +G   ++Q+  L   L      +   ++   I S  L  
Sbjct: 451 VLNFVSQLMVFLWVLYYLITVEGGGATEQVIDLLP-LSKQVKDRCVEVIDHAISSVLLAT 509

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFN 277
             IAI +G +    + L  V       V   I A++P   P +S    +  LL++G    
Sbjct: 510 AKIAIFQGCLTWLLFKLFKVHFVYTSTVFAIISALLPILPPWLSSIFAAGQLLMEGRYVL 569

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM--GLLGLFIGPVLM 335
           A  + +   I +      ++  + G         T   ++GG+      L G  +GP++M
Sbjct: 570 AIVVTVVHLIIMDYGTTVIQEDIPGYNG----YLTGLSIIGGMALFPNALEGAILGPLIM 625

Query: 336 ALIAVIWKESIMAIKENKEKISS 358
            ++  +       +  + E+ SS
Sbjct: 626 TVVMALKNLYTEFVLADSEETSS 648


>gi|91977182|ref|YP_569841.1| hypothetical protein RPD_2711 [Rhodopseudomonas palustris BisB5]
 gi|91683638|gb|ABE39940.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           BisB5]
          Length = 395

 Score = 63.3 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 44/349 (12%), Positives = 94/349 (26%), Gaps = 10/349 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +    +L + +   G    + + ++ G     +                 +    + 
Sbjct: 34  ISTVAFGALLYAAWHFAGTLFLIFAGILFGVFLNALTELAGKVVGGPHGLRLGLVCFLLT 93

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +F+   +        +   L   +     +   V  +L          EL   +   P 
Sbjct: 94  AMFVGIAVLGGSTIGQQATALSGTIKTQIVN---VKTFLERQGVDTSFMELSLANAGGPT 150

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL-------SIIFMIIALFFFYRDGFSI 184
           +                +           L   L       +   ++     F       
Sbjct: 151 AETQAPPQPRNLPSAGELASGGGAIVSQTLKLILGTIGAVGNFFIVMFLGLAFAAQPDVY 210

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + L+ +    +     +I     ++++   L   I       V  +   + G+P    L
Sbjct: 211 RRGLERVAPLRYRPQASRIVNDTGEMLKRWLLAQLITMTAVFAVTATGLSMIGIPGAFIL 270

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           G+   ++A IP    I    + +   I    F   C F        +    L P +    
Sbjct: 271 GIQAGLLAFIPTVGAILGGLIIVLAAIASGWFAVLCAFALFLGVHALESYILTPLIQRQA 330

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           I +P    F   +      GL GL +   LMA+  V+          N+
Sbjct: 331 IDIPPATLFAMQILLGIVFGLWGLAMALPLMAIGKVVINHLRAEGPANE 379


>gi|254517117|ref|ZP_05129175.1| permease, PerM family [gamma proteobacterium NOR5-3]
 gi|219674622|gb|EED30990.1| permease, PerM family [gamma proteobacterium NOR5-3]
          Length = 358

 Score = 63.3 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 55/317 (17%), Positives = 111/317 (35%), Gaps = 12/317 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
            AP+L+++++ +    + +  + +          IA  + M  F   LL L      +  
Sbjct: 39  LAPLLASIVLAYLVQGVVN-LLCRLGLPPWLGFFIAFTAFMGAFFAVLLGLLPLVWRQSI 97

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L+++V      G  +   L      +++     + L   Q         + T  +  IP
Sbjct: 98  GLITEVPRMIDQGRDLLEVLPGRYPEVFSQSQIDQMLGGIQGEIAGLGQKVVTMTLARIP 157

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                    F+   + ++ + I +FF  +D   I++ L        P    +I   +   
Sbjct: 158 --------GFMTLLVYVVLVPIIVFFLLKDRAQITRWLAGFLPESRPLL-NRIWAEMNVQ 208

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
             +   G  +  I  G V   ++   G+     LG++  +  +IP  GA I    V+   
Sbjct: 209 FSNYARGKMVEIIIVGAVSYVSFTGLGLRYAALLGLLVGLSVIIPYIGAFIVTVPVAAVG 268

Query: 270 LIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L +  +       L   + + ++D   L P L    + L  +     ++      GL G+
Sbjct: 269 LFQWGLTPEFYWVLAVYVVIQMLDGNVLVPLLFSEAVNLHPVAIIVAVLFFGGIWGLWGV 328

Query: 329 FIGPVLMALIAVIWKES 345
           F    L  LI  +    
Sbjct: 329 FFAIPLATLIKAVINAW 345


>gi|330428770|gb|AEC20104.1| hypothetical protein PT7_1564 [Pusillimonas sp. T7-7]
          Length = 396

 Score = 63.3 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 45/330 (13%), Positives = 108/330 (32%), Gaps = 18/330 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +    ++ +L + K FF P++  ++I FT  P+ S     +        ++AT  VM  
Sbjct: 45  ILATVALVFALQWAKAFFIPLVLGILIAFTLNPLVSWLERMRLPR-----IVATSLVMLA 99

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +     +      E   ++ ++ +A        + +++   G         +     ++
Sbjct: 100 LLGSSGMVAVSVYNEADAIMDELPVATYKLANAFKRINNGELGTLDKLRSAANTLKEAAI 159

Query: 134 KILSETFLKTNGIDFIPRFASRF---------GMIFLDYCLSIIFMIIALFFFYRDGFSI 184
               ET                           +    +   +  ++   FF    G + 
Sbjct: 160 PAAPETQASEKPAAPAVPAVPDLNLNDLLWTGSLNAAAFLGQMSMVLFLAFFALSSGNTF 219

Query: 185 SQQLDSLGEHLFPAYW--KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            ++L  L            +I   +   ++   L + +  +  GL+  + + L G+ +  
Sbjct: 220 KRKLVKLTGPSISRKKITVQILDDINSSVQKYMLMLLVTNVLLGLISWAVWHLIGLENPG 279

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIK--GNIFNATCLFLWGAIELFIVDKTLRPFL 300
           A  V  A++ +IP    +   AV+ +       +      +          V   +  ++
Sbjct: 280 AWAVAGALLHIIPYFGSLLAAAVTGFAAFMQFDSFSMMLLVAAITLGIASFVGMLVATWM 339

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            G   K+     F  L+ G    G+ G+ +
Sbjct: 340 TGRIAKMNPAAVFVALLFGAWLWGVWGMLL 369


>gi|299538077|ref|ZP_07051362.1| hypothetical protein BFZC1_18760 [Lysinibacillus fusiformis ZC1]
 gi|298726279|gb|EFI66869.1| hypothetical protein BFZC1_18760 [Lysinibacillus fusiformis ZC1]
          Length = 350

 Score = 63.3 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 62/340 (18%), Positives = 125/340 (36%), Gaps = 22/340 (6%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
              G  R++I+  I ++LY ++     +L   II +    + +       + +       
Sbjct: 6   RSNGFKRFIILVGIALALYLMRSMINLILLTFIITYLMNQLTTKTTKSIRKYTPMNEKAV 65

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           TV++  L +  ++ +              + +  Q    +   ++        +E+    
Sbjct: 66  TVTLYLLLVAGIVAVI----------YKYLPIVTQQITQLFDLIASFNLDPDDNEI--AR 113

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
              P   KI    +L   G+D   +  +  G I +   +S+I  +  L     +   I +
Sbjct: 114 YLAPTFEKIELGKYL-EQGVDLTLKNITNIGKIIMQILISLILSLFIL----LEKNRIIE 168

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 +      + ++       IRS         IIA    ++   A  + G P  +A
Sbjct: 169 FTAKFKDSKIGPLYDELHYFSRIFIRSFGKVIEAQFIIAAVNCVLSVIALSIMGFPHLIA 228

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           LG++  I+ ++P  G  IS   +SI     G +     + +   +   I    L P L+ 
Sbjct: 229 LGIMLFILGLVPVAGVIISLIPLSIIAYSIGGLMYIVYILVIVMVLHAIEAYFLNPKLMS 288

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
               LP   TF  ++     +G+ GL IG P+ M L+ ++
Sbjct: 289 AKTDLPIFYTFMVILFSEHFLGVWGLIIGIPLFMFLLDIL 328


>gi|166366520|ref|YP_001658793.1| hypothetical protein MAE_37790 [Microcystis aeruginosa NIES-843]
 gi|166088893|dbj|BAG03601.1| UPF0118 membrane protein [Microcystis aeruginosa NIES-843]
          Length = 186

 Score = 63.3 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 70/165 (42%), Gaps = 4/165 (2%)

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
              DG  + +    L      AY ++ ++   +       G  ++ +   +    ++ L 
Sbjct: 1   MLIDGDKLWRSFLQLLPI---AYRERFAKSFRQSFLGFIRGQLLLMLFLSVTSFLSFSLL 57

Query: 237 GVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
           G+   + L  I  ++  IPG GA +    V+I       +  A   F+   + + I D  
Sbjct: 58  GIKYGLILASILGVIDAIPGVGATLGILLVTILTFTSQGLAIAVKAFIVCVVLVQIQDNI 117

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           LRP ++G  ++L  +  F  L  G R  GLLG+F+   +  +IA+
Sbjct: 118 LRPKVMGNALELNPVILFLSLFIGERVAGLLGIFLSIPIAGMIAI 162


>gi|167648743|ref|YP_001686406.1| hypothetical protein Caul_4788 [Caulobacter sp. K31]
 gi|167351173|gb|ABZ73908.1| protein of unknown function UPF0118 [Caulobacter sp. K31]
          Length = 373

 Score = 63.3 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/333 (11%), Positives = 100/333 (30%), Gaps = 26/333 (7%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           ++ +     +LY+++G   P+  A+ +           + +       LA+   + +   
Sbjct: 15  FLAVVAGGAALYWMRGILTPLAMAVFLAVMIDSFARVLVLRVPRFPRSLALPTAIVLSIG 74

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
                +++           +          I     L  +       +L  +        
Sbjct: 75  MFAAAVWVVTSNGAGFVGQIRDYAPRLNEVIAKIASLVGVKVAPTIGDLINQLNP----- 129

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                             +A        ++  S I ++I L F        ++++ +L  
Sbjct: 130 ----------------SAYAGAAAQSLQNFASSAILVLIYLGFIIASRRGFNRKIVALYP 173

Query: 194 HLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           H        ++ + +   +       T+  +   +       L  + + +    +  + A
Sbjct: 174 HHAERDGAMQLFQRIRNGVEQYLWIQTVTGLMIAIAAFVVMMLLRLDNALFWAFLIFVAA 233

Query: 253 MIPGGAPIS---FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            IP            +   +    + + A  LF    +  F+V   + P + G  + +  
Sbjct: 234 YIPIIGGAIGCILPPLFALVQFPDSFWPALILFAALELIFFVVGNVIYPRMQGDSLNIDP 293

Query: 310 LPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
                 L       G+ G+F+  P+ +AL+ ++
Sbjct: 294 TVVLLSLAVWGALWGVTGMFLSTPLTVALMLIM 326


>gi|39937281|ref|NP_949557.1| hypothetical protein RPA4221 [Rhodopseudomonas palustris CGA009]
 gi|39651139|emb|CAE29662.1| putative permease [Rhodopseudomonas palustris CGA009]
          Length = 371

 Score = 63.3 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 56/316 (17%), Positives = 121/316 (38%), Gaps = 19/316 (6%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           K FF P+++A ++G    P  S     +   +    +I T+ +  +    ++ L    ++
Sbjct: 57  KPFFLPMVTAFVVGTMVSPAASFLERFRIPRAVSAVLIVTLGLGTVIF--MIGLISAPLI 114

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           E    + ++    +  + V              ++W +  S     + L +  ++   ID
Sbjct: 115 EWSSRIPEIGSLLRDKLHVLD---------RPLQMWRQIQSSLSGSESLPQPSVQMPKID 165

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
           ++  F S      L   L  + M++     ++D       + +           +I   +
Sbjct: 166 WVFEFLSP----TLTEVLLFLVMLVLFVAGWKDLRR--SLVMNFAGREARLRTLRILNEI 219

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVS 266
              + +  L +T+I +  G   G     AG+P+   LG + A++  IP  G  + F  ++
Sbjct: 220 EGSLGAYLLTVTVINLCYGAATGLLCAAAGMPNPAGLGALAAVLNFIPIIGPFVMFVIMT 279

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +  +I      A  L  +G + L   +   + P ++G  + L  L  F  L       G 
Sbjct: 280 VVGIISMPTLGAGLLAPFGFVLLTFFEGHFITPTIIGRRLSLNTLAVFITLAFWTWLWGP 339

Query: 326 LGLFIGPVLMALIAVI 341
           +G F+   L+ +  V+
Sbjct: 340 MGSFLASPLLIVGLVL 355


>gi|113953062|ref|YP_731825.1| hypothetical protein sync_2637 [Synechococcus sp. CC9311]
 gi|113880413|gb|ABI45371.1| putative membrane protein [Synechococcus sp. CC9311]
          Length = 360

 Score = 63.3 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 105/298 (35%), Gaps = 17/298 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  F    L+A +I F    I S ++  +         +     + + ++  + L    +
Sbjct: 31  LAPFPGLFLTAALIAFLLS-IPSRWLRARGLPDWLAISLVFFVAVGILVISGITLVPLLI 89

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG- 145
            ++ +L++           +P WL    G +   + W      P     LS   L     
Sbjct: 90  DQLAQLIN----------ALPGWLEASQGLIARLQGWAMAHGLPSEFGDLSSDVLTRASR 139

Query: 146 -IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               + +         L   ++ + +++   FF   G SIS  L       +      + 
Sbjct: 140 LASQLSQQLLSILGATLGTTINTVIVLVLAVFFLLGGDSISAGLVRWLPQEWRQL---VV 196

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
             + +  R  F G  ++A+       + + L  +P  V   V+  +  +IP  +  +  A
Sbjct: 197 TTITRTFRGYFAGQVVLALILSAGQIAVFTLLKIPYGVLFAVLIGLTTLIPYASAFTVVA 256

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
           VS+ L ++ ++     +         IVD+ ++P L+G  + L        L  G R 
Sbjct: 257 VSVLLAVQ-DLGMGVAILAAAIGVGQIVDQVIQPRLMGSIVGLQPAWLLIALPLGARA 313


>gi|241895774|ref|ZP_04783070.1| permease [Weissella paramesenteroides ATCC 33313]
 gi|241870817|gb|EER74568.1| permease [Weissella paramesenteroides ATCC 33313]
          Length = 346

 Score = 63.3 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 58/333 (17%), Positives = 122/333 (36%), Gaps = 17/333 (5%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           + + + +  IL+ LY ++   + VL   I  + +  I S      +    F  +I  +  
Sbjct: 13  VQKLIALIFILIVLYIIRDLISIVLLTTIFSYLAVKIASKINRWTKIPYGFSVLIFFIVS 72

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +F++   F+    + +   +  +V+   ++   + ++L+D    +      TK+    
Sbjct: 73  IIIFVMAFTFIVPTLVKQFAVIPDEVMKVVKNSPDIKKYLNDTYQNLDLLNEITKNWKS- 131

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                     L  +G D +    S    + L   LS IF I      ++       Q   
Sbjct: 132 ----------LLESGWDTLNVIGSVLSKVLLSIFLSFIFAIS-----WQRLRIFGTQFIH 176

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                F      ++     ++ S      IIA    +++        VPS + + ++  I
Sbjct: 177 SNYPKFFTNVYDLTSTFVLILGSVIEVQMIIAFINTILMVIGLSFLKVPSILVMALLIFI 236

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           + +IP  G  +S   +S+             +++  A+        L P L+    +LP 
Sbjct: 237 LGLIPIAGVLLSLIPLSVISFAALGWTGMIEVWILVAVIHLFESYFLHPRLMATRTELPI 296

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
             TF  ++     +G  GL IG  ++A I  + 
Sbjct: 297 FLTFATIIVMEHLLGAWGLIIGVPIVAFILNLL 329


>gi|239993129|ref|ZP_04713653.1| transport protein [Alteromonas macleodii ATCC 27126]
          Length = 386

 Score = 63.3 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 118/357 (33%), Gaps = 29/357 (8%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
               ++  +++F ++ +LY  K    P+  +  +     P+  +F  K     T  A   
Sbjct: 24  QQTRLLNILVIFAVIYTLYLAKSLLVPLFFSAFVALLLSPL-VAFARKLFIPRTLSAG-- 80

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKV-----------------VLANQHGIPVPRW 109
             +++ L + P  FL        +  +  +                 + A       P  
Sbjct: 81  --ALIVLLVAPFTFLGIELAEPAERWMQSLPKIAAEISKEIEEISSNIDAYATPPAEPVE 138

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
                   +  +  +  LS PQ         +K +GID                   ++ 
Sbjct: 139 KERSFFSWFGDDEKSPELSPPQDNTNSVTDKIKQSGID----IGLTLFGNAPFLLAQVLA 194

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK-ISRIVPKVIRSTFLGMTIIAIGEGLV 228
            I+ +FF    G ++          +        +   + + + S  + ++II    GL 
Sbjct: 195 CIVLIFFLLVFGPNLFNVFVRDFPIVTNKRRTLVLVDQIQRELSSYIVTISIINSCLGLA 254

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
               ++  G+   +  G + A+M  +P  GG       + + L+  G   +A        
Sbjct: 255 TAGVFYYLGIDDALLWGALVALMNFVPYLGGVASCVVLLVVGLVQFGLTSSAFLPAGLFL 314

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +   I  + + P ++G  ++L  L     +       G++G+ +   ++    +I +
Sbjct: 315 VLNIIESQLITPAVLGRSMQLNPLIIIIWIAITGWLWGVVGVLLAVPILMCFKIILE 371


>gi|254422152|ref|ZP_05035870.1| conserved domain protein, putative [Synechococcus sp. PCC 7335]
 gi|196189641|gb|EDX84605.1| conserved domain protein, putative [Synechococcus sp. PCC 7335]
          Length = 359

 Score = 63.3 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/326 (11%), Positives = 104/326 (31%), Gaps = 15/326 (4%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + ++       +A+ +      +  S + K+ +   F  V+  V++  +       +   
Sbjct: 20  WSIRFVVLLAFTAITLATVLNRVVRSLVGKRLKR-NFAIVLTLVALAFVLTAIFAVVAPP 78

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW--ASELWTKHLSHPQSLKILSETFLK 142
            + ++      +  A      V  W++ I   +    SE   +  +  Q + +++ +   
Sbjct: 79  FVDQVN---QWLDQAPLEVAQVSLWINRIDDRIPVELSEQLQRLDTFIQDIPMIARS--- 132

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 +   A  F    L    + + +++       +  +      S+    +     +
Sbjct: 133 ------VFNNAFLFFRGTLAILFNALLVLVITIMLLVNPKAYRNVFVSIFPQFYRYRVIE 186

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           I     + +     G+    +   ++  S   + GVP  +    +  ++  IP   P+  
Sbjct: 187 ILDHCERSLVGWGAGILFNIVVITVLSFSGLAILGVPLPIGNAFLAGLLTFIPNIGPVLS 246

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
                 L +    +    +     +   I    L P ++   + L         +     
Sbjct: 247 VVPPAVLGLLEAPWKGAAVVGLYILIQQIESNLLTPMVMKRQVSLLPAIALTSQLVCGVL 306

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMA 348
            G +GLF+   L  +  V  +E ++ 
Sbjct: 307 FGFIGLFLALPLTVVAQVWLQELVVK 332


>gi|104783049|ref|YP_609547.1| PerM family permease [Pseudomonas entomophila L48]
 gi|95112036|emb|CAK16763.1| putative permease (PerM family) [Pseudomonas entomophila L48]
          Length = 356

 Score = 63.3 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 52/350 (14%), Positives = 123/350 (35%), Gaps = 18/350 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+    + + ++  +++F+    +  L G  APVL+ +++ F    + ++    K  S  
Sbjct: 9   MQRYFSDEEAVVLAVLLFLAFTVVLTLGGMLAPVLAGMVLAFLMQGLVNALERLKVPSRL 68

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            + ++ T+ +  L +  +L L      ++  L +++          P  L      +   
Sbjct: 69  AVWLVFTLFMGALAVF-MLVLVPLLWHQLITLFNEL----------PGMLGKWQSLLLLL 117

Query: 121 ELWTKHLSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                HL   + +    E+     G    +   F+     + ++  + ++ + I +FFF 
Sbjct: 118 PERYPHLVSDEQVLRAIESVRGEIGKFGQWALTFSLSSLPLLVNAMIYLVLVPILVFFFL 177

Query: 179 RDGFSISQQLDSLGEH---LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           +D   I + +         L      +++R +   IR   + + I  I   +   S    
Sbjct: 178 KDRELIGRWVSGYLPRQRTLLNRVGDEMNRQIANYIRGKGIEILICGIATYIAFISLGLN 237

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
                 + +G+   +  +      +  T ++++    G+ F    L    AI   +    
Sbjct: 238 YAALLALLVGLSVVVPYVGAVVVTVPVTLIALFQWGWGDQF--IYLMAVYAIIQALDGNV 295

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           L P L    + L  +     ++      G  G+F    L  L   +    
Sbjct: 296 LVPLLFSEAVSLHPVAIICAVLLFGGLWGFWGIFFAIPLATLFKAVLDAW 345


>gi|218247316|ref|YP_002372687.1| hypothetical protein PCC8801_2523 [Cyanothece sp. PCC 8801]
 gi|257061349|ref|YP_003139237.1| hypothetical protein Cyan8802_3583 [Cyanothece sp. PCC 8802]
 gi|218167794|gb|ACK66531.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 8801]
 gi|256591515|gb|ACV02402.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 8802]
          Length = 360

 Score = 63.3 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 55/255 (21%), Positives = 92/255 (36%), Gaps = 16/255 (6%)

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF-------LKTNGIDFIPRFASRFGM 158
           +P+W+      + A + W    ++P  L  +   F       LK+ G  F+       G 
Sbjct: 102 LPQWIESGNQQINALKEWAITENYPFDLASIITQFAEKLSLILKSLGNQFLSLIGGTLGT 161

Query: 159 IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
           IF    + ++ + + L      G SI+Q + S        +  +I   + K   S F   
Sbjct: 162 IFNSLLVLVLTVFLVLT-----GNSITQGIFSWIPR---PWNTRIQESLRKTFESYFATQ 213

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA 278
            I+A    +     +    VP  V  GV   +  +IP  + I+   VS+ L+ + N    
Sbjct: 214 AILAGILSIAQTIVFLFLQVPYAVLFGVTIGVTTLIPYASAITIIIVSVLLIFQ-NFQLG 272

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
                   I   I D  + P L+G    L  +     L  G +  G+LGL I   L ++I
Sbjct: 273 ITALFLTIIVGQINDNVISPRLMGDMTGLNPVWIVVALFIGGKFAGVLGLIIAVPLASVI 332

Query: 339 AVIWKESIMAIKENK 353
                        N 
Sbjct: 333 KTTVDMVRYPPDSNH 347


>gi|229099866|ref|ZP_04230790.1| hypothetical protein bcere0020_50840 [Bacillus cereus Rock3-29]
 gi|229118928|ref|ZP_04248275.1| hypothetical protein bcere0017_51920 [Bacillus cereus Rock1-3]
 gi|228664584|gb|EEL20079.1| hypothetical protein bcere0017_51920 [Bacillus cereus Rock1-3]
 gi|228683612|gb|EEL37566.1| hypothetical protein bcere0020_50840 [Bacillus cereus Rock3-29]
          Length = 274

 Score = 63.3 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 69/168 (41%), Gaps = 5/168 (2%)

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            ++  H    + KK +R   KVI + F    +IA+   ++   A W+ G P  + L ++ 
Sbjct: 107 LAIFYHEIEYFGKKFARSFGKVIEAQF----LIAVVNCVLSVIALWILGFPQLLGLALMI 162

Query: 249 AIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++ +IP  G  IS   + +     G I     + +   +   +    L P  +     L
Sbjct: 163 FLLGLIPVAGVIISLFPLCMIAYNIGGIMYVVYILIIVTVIHALESYVLNPKFMSQKTNL 222

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           P   TF  L+     +G+ GL IG  +   +  +   +   ++ + EK
Sbjct: 223 PIFYTFMVLIFSEHFLGVWGLIIGIPIFIFLLDVLDVTSDEMERDIEK 270


>gi|300362643|ref|ZP_07058819.1| integral membrane protein [Lactobacillus gasseri JV-V03]
 gi|300353634|gb|EFJ69506.1| integral membrane protein [Lactobacillus gasseri JV-V03]
          Length = 349

 Score = 63.3 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 56/357 (15%), Positives = 121/357 (33%), Gaps = 27/357 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST-F 61
           E       + R   + +I++ LY  +     +L   I  +    +      K     +  
Sbjct: 6   EKFKKNTNVHRLATLCLIILVLYAARSMMNTILLTFIFTYLIVHLIRFTQKKLPNLPSQV 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           + V+A + V+ +    +       + ++ ++   ++   Q                W ++
Sbjct: 66  IVVLAYLLVIAIIYFAITIYVPILIKQIVKMSHSLMKFYQSD-----------NMDWLTQ 114

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
               ++S  +            +G+  +    +  G + + + +S+I      FF+  + 
Sbjct: 115 YLNHYISDSEITTQ------AKHGVTILVHALTNVGTLTIAFFMSLIMS----FFYTIEL 164

Query: 182 FSISQQ----LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            S+++     L+S                              IA+    +      +  
Sbjct: 165 DSMNEFSYTFLNSRHLSWLFKDIAYFGNKFVNTFGVVLEAQFFIALCNTAMTMICLIIMK 224

Query: 238 VPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           +P  +ALG++  I+++IP  G  IS   +S      G I     +F+   I   I    L
Sbjct: 225 MPQIIALGLMVFILSLIPVAGVIISLIPLSFVAYSVGGIRYVIYIFIVIMIIHAIEAYIL 284

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            P  +    +LP   TF  L+ G   +G  GL +G  +   +  I     +  K+ K
Sbjct: 285 NPKFMSSKTELPIFYTFVVLLAGEHFLGTWGLIVGVPIFTFLLDILGVKSVKTKKPK 341


>gi|75908912|ref|YP_323208.1| hypothetical protein Ava_2700 [Anabaena variabilis ATCC 29413]
 gi|75702637|gb|ABA22313.1| Protein of unknown function UPF0118 [Anabaena variabilis ATCC
           29413]
          Length = 373

 Score = 63.3 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 53/330 (16%), Positives = 119/330 (36%), Gaps = 19/330 (5%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           ++L  + + +     V +A+++ F   +PI   F  ++            +  + + +  
Sbjct: 26  LLLQVVQYFQPLVNVVAAAILLAFVLNYPIQ--FFQERGVKRNLAIGSVLLLAVVILVGL 83

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
            + L    + ++ ELV+ +          P W+      + A + W      P +L  L 
Sbjct: 84  GVTLVPLIIEQLNELVNIL----------PYWIDSGGQQIDAFQKWAATQQLPVNLSGLV 133

Query: 138 ETFLKTNGIDFIPRFASRFGMIF--LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              L+              G  F  +   ++++  ++   +   +G  +   L       
Sbjct: 134 TQILERVSSQLQSVTGRILGFAFDTIGVVVNVLLTVVLTIYMVLNGDRLWDGLYQWFPTH 193

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 K+ +I+ +   + F+G   +    GL +  A+    VP  +  G+   + ++ P
Sbjct: 194 IG---SKVRQILREDFHNYFIGQATLGAILGLTITLAFVTLRVPLALLFGLAIGLFSLFP 250

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G  I  + VS+ + ++        L +  AI+       + P ++G    L  +     
Sbjct: 251 FGTGIGISIVSLLVALQNFWLGGEVLGVAVAIDQVNS-NFIAPRILGNLTGLNPVWVVIS 309

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           L+ G +  G+LGL I     + I  I    
Sbjct: 310 LLLGAKLGGVLGLLIAIPTASFIKDIADSW 339


>gi|294651524|ref|ZP_06728834.1| hypothetical protein HMP0015_3043 [Acinetobacter haemolyticus ATCC
           19194]
 gi|292822588|gb|EFF81481.1| hypothetical protein HMP0015_3043 [Acinetobacter haemolyticus ATCC
           19194]
          Length = 358

 Score = 62.9 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 108/335 (32%), Gaps = 20/335 (5%)

Query: 16  IMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           I+  +++  + LK   GF  P+L A I  +    +    +      ST       + ++ 
Sbjct: 19  ILLFLILFGWLLKIGQGFLLPILVATIAMYILITLSHWLVKFPVLKSTPEWFRRILVLIS 78

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
             +V         M+++  LV  +    +    +P + ++I         +      P  
Sbjct: 79  FIVV---------MVQLISLV--ITTGQKILAKMPIYEANIEQVFLHVNAYLGWSDSPDW 127

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                    + N    I    + F  +   + + I++ +    F   +     ++L    
Sbjct: 128 QIFREMLMSQINLQSLITSTLTSFSALTGMFVVIIVYAL----FLLNERDQFVKKLMIAF 183

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                   + +   + K I    +  T+I +    +     W  GV   +   +I  +  
Sbjct: 184 PDGKTEQTRLLIADINKKISEYLVVKTLINLILATICFVILWACGVEYALFWALIIGLFN 243

Query: 253 MIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            IP    +      V + L   G++     + +  A+    V   L P ++G  I L   
Sbjct: 244 YIPYVGSLFGVIFPVLMTLAQTGSLKLTILVAILLAVAQMFVGNFLEPRMIGKQINLSPF 303

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
                L       G+ G  +   L ++  ++ +  
Sbjct: 304 VVLLSLSLWSSLWGIAGAILAIPLTSIFVIVLEAF 338


>gi|148657814|ref|YP_001278019.1| hypothetical protein RoseRS_3715 [Roseiflexus sp. RS-1]
 gi|148569924|gb|ABQ92069.1| protein of unknown function UPF0118 [Roseiflexus sp. RS-1]
          Length = 412

 Score = 62.9 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 52/357 (14%), Positives = 111/357 (31%), Gaps = 32/357 (8%)

Query: 10  GIMRWMIMFIILVSLY--------FLKGFFAPVLSALIIGFTSWPIYSSFISK------- 54
            +  W+++    V L+        F          A +I     P+ S   +        
Sbjct: 8   TVALWLLIICAAVFLFERAVVVVSFFATPLLLFALAWLIAVVLQPLVSRLTALDLPPITI 67

Query: 55  ---------KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
                    +  S      +  +++    IV +L        ++  L   V    +    
Sbjct: 68  RARRVPPPPRHLSRMLSVALIYLALFAALIVVILSFVPAITQQLTTLTGSVPTTVES--- 124

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           + RW+  +   +          +  Q   I  +    T     + + +            
Sbjct: 125 IARWIGRLDESLERFGFRGDLTAIVQPEAIAQQL---TGFGSAMLQQSLGIAGSIATVLF 181

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           +I  ++I  F+   DG  + +   ++    +      +  ++ +V         + ++  
Sbjct: 182 NIFLVLILSFYITLDGPRMGKSFVAVLPQSWHDEVDNLFAVIDRVFGGFMRAQFVNSLLY 241

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLW 284
           G+       + G+       V+ AI+  IP  G   +    +++ ++         L L 
Sbjct: 242 GVANAIVMAMFGLGDIALASVVAAILVFIPLVGGFFALIPPALFAILF-APDRLGWLLLT 300

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             I   +    + P LVG  I L  L  F  L+ G    G  G+  G  +  +IA I
Sbjct: 301 LLIVQQVQFNIVMPRLVGQAIGLHPLLVFAALLLGGTVAGGWGVLFGIPVAGVIASI 357


>gi|258652494|ref|YP_003201650.1| hypothetical protein Namu_2284 [Nakamurella multipartita DSM 44233]
 gi|258555719|gb|ACV78661.1| protein of unknown function UPF0118 [Nakamurella multipartita DSM
           44233]
          Length = 406

 Score = 62.9 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/258 (13%), Positives = 88/258 (34%), Gaps = 5/258 (1%)

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
              + + V    +     P++++ +     A     +     ++++ + +      G   
Sbjct: 135 AAAIPALVEQGRRLVEAAPQYVAQLSDDSSAIGQLNQRFHLQETVQQIVD-----GGGPG 189

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +       G         ++ + +   +F  D   +   L              +   + 
Sbjct: 190 LASGVISVGEAVFGAFSGLLVVAVLTVYFLADMPRVRTTLYRFMPAPRRPRAILLGDQIM 249

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
             +    LG  +I++   +V        GVP  + L ++ A++ +IP    +   A+   
Sbjct: 250 VKVGGYVLGNVVISVISAVVTFVWLIAFGVPYPLLLAILFALLDLIPVIGSLIAGALVAL 309

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
                ++        +      + D  L P + G  +++P L T   ++ G   +GL+G 
Sbjct: 310 AAFSVSVPVGLATIGYFVAYKLVEDYLLTPKVFGRVLRMPALVTVCAILIGGALLGLVGA 369

Query: 329 FIGPVLMALIAVIWKESI 346
            +     A I ++ +E +
Sbjct: 370 LVALPTAAAIMLLVQEVV 387


>gi|145640286|ref|ZP_01795870.1| hypothetical protein CGSHiR3021_09515 [Haemophilus influenzae
           R3021]
 gi|145274872|gb|EDK14734.1| hypothetical protein CGSHiR3021_09515 [Haemophilus influenzae
           22.4-21]
          Length = 348

 Score = 62.9 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 54/346 (15%), Positives = 122/346 (35%), Gaps = 23/346 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+  +   + ++    + IIL  +        P L +L I     P+  +   ++     
Sbjct: 1   MQNNLNLHRTLLGIAAVIIILAGVKLAAEIVVPFLLSLFIAIICSPMIKAMTQRRVPH-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +LA+     ++ L    L+ L      E               IP  + L          
Sbjct: 59  WLAITLLFVLISLVFFFLVGLINSTAREF-----------TQSIPQYKVLLSQRVSDLTG 107

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L   +L    S + + E F  +  ++F+ R    F  +  +  + ++ +I    F   +
Sbjct: 108 LLQRFNLPFTLSRETIQENFDPSIIMNFVSRVLLNFSGVVSNVFVLVLVVI----FMLAE 163

Query: 181 GFSISQQLDSLG---EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             ++  +   +     H      + I R++  VI    +     ++  G+ +       G
Sbjct: 164 APTMKHKFAMVISSTPHDAAKEERHIDRVLQGVIGYLGIKSI-TSLLTGVGVFILLEACG 222

Query: 238 VPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           V   +    ++ ++  IP  G+ I+   + +  L+         + +       +V   +
Sbjct: 223 VQYAILWATLSFLLNYIPNIGSIIAAIPIIVQALLLNGFGIGFGVAIGVIAINMVVGNII 282

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            P ++G  + L  L  F  L+     +G +G+ +  P+ MAL   +
Sbjct: 283 EPKMMGQRLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMALKIAL 328


>gi|224045876|ref|XP_002187113.1| PREDICTED: similar to Transmembrane protein C9orf5 [Taeniopygia
           guttata]
          Length = 817

 Score = 62.9 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 87/245 (35%), Gaps = 15/245 (6%)

Query: 108 RWLSDIPGGMWASELWTKHL------SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL 161
            WL DI      +     ++           + +     L    +  +       G   L
Sbjct: 546 SWLGDILDWQDVASFVHDNIETFLSILESLWIVMSRNVSLLFTTVTALVTILFHSGTALL 605

Query: 162 DYCLSIIFMIIALFFFYRDG---FSISQQLDSLGEHLFPAYWKKIS-RIVPKVIRSTFLG 217
           ++ LS++  +  LF+        +   + + SL     P     I  + V + IR  F  
Sbjct: 606 NFVLSVVIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIVGQSVEEAIRGVFDA 665

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI-KGNI 275
              +A   GL     + + G+        + AI+  +P  G   +     + L + +G  
Sbjct: 666 SLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWLVQGQG 725

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             A  L ++  +  + VD  +   + GG        T   + GG   +GL G  IGP+L+
Sbjct: 726 CKALLLLVFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAIIGPILL 782

Query: 336 ALIAV 340
            ++ V
Sbjct: 783 CILVV 787


>gi|33864295|ref|NP_895855.1| hypothetical protein PMT2030 [Prochlorococcus marinus str. MIT
           9313]
 gi|33641075|emb|CAE22204.1| Domain of unknown function DUF20 [Prochlorococcus marinus str. MIT
           9313]
          Length = 356

 Score = 62.9 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 97/297 (32%), Gaps = 14/297 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  F    ++A +I F           +          +  V  + L ++  + L    +
Sbjct: 34  LAPFPGLFVTAALIAFLLDIPSRWINQRLGLPRWLAIGVVAVLAVGLLVLAGVALVPRLI 93

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++ +L++++          P WL    G +   + W      P      S   L     
Sbjct: 94  DQLGQLINEL----------PGWLVAAEGWVSRLQEWASGRGLPSEFGDFSSDLLTRLSG 143

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS-R 205
             +    S+  +  L   L I    + +             + +      P  W+++   
Sbjct: 144 --VATQLSQQLLGILGATLGITINTLLVLVLAVFLLLGGDPITAGLARWLPDQWRELVVD 201

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +    R  F G  ++A+       + + L  +P  V   V+     +IP  + ++   V
Sbjct: 202 TITGTFRGYFAGQVLLALILSGGQIAVFTLLDIPFGVLFAVLIGFTTLIPYASALTIVGV 261

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
           S  L ++ +      +         IVD+ ++P L+G  + L        L  G RT
Sbjct: 262 SALLALQ-DPRMGLEILAAAIAVGQIVDQVIQPRLMGSIVGLQPAWLLIALPIGART 317


>gi|218198014|gb|EEC80441.1| hypothetical protein OsI_22633 [Oryza sativa Indica Group]
          Length = 542

 Score = 62.9 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 79/203 (38%), Gaps = 9/203 (4%)

Query: 160 FLDYCLSIIFMIIALFFFY-RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
            L++   ++  +  L++    +G   ++Q+  L   L      +   ++   I S  L  
Sbjct: 345 VLNFVSQLMVFLWVLYYLITVEGGGATEQVIDLLP-LSKQVKDRCVEVIDHAISSVLLAT 403

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFN 277
             IAI +G +    + L  V       V   I A++P   P +S    +  LL++G    
Sbjct: 404 AKIAIFQGCLTWLLFKLFKVHFVYTSTVFAIISALLPILPPWLSSIFAAGQLLMEGRYVL 463

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM--GLLGLFIGPVLM 335
           A  + +   I +      ++  + G         T   ++GG+      L G  +GP++M
Sbjct: 464 AIVVTVVHLIIMDYGTTVIQEDIPGYNG----YLTGLSIIGGMALFPNALEGAILGPLIM 519

Query: 336 ALIAVIWKESIMAIKENKEKISS 358
            ++  +       +  + E+ SS
Sbjct: 520 TVVMALKNLYTEFVLADSEETSS 542


>gi|126661462|ref|ZP_01732518.1| hypothetical protein CY0110_29024 [Cyanothece sp. CCY0110]
 gi|126617254|gb|EAZ88067.1| hypothetical protein CY0110_29024 [Cyanothece sp. CCY0110]
          Length = 357

 Score = 62.9 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 79/215 (36%), Gaps = 1/215 (0%)

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               +    S      +   L++   I+   +       +   + SL    +    K   
Sbjct: 143 SSQQLLIGVSGLTRGIVGGVLNVFLAILLSGYMLSGSQQLINGIVSLFPIPWDEKLKDQV 202

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV-PSHVALGVITAIMAMIPGGAPISFT 263
             V + +     G  +++   GL +       G+    + LG I  +  +IP   P+  +
Sbjct: 203 VPVSQRMGGYIQGRLLVSFILGLTVSLGLKFLGIGEFALGLGTIAGMTNLIPFFGPVLGS 262

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++ + +    +    + L   I   +    L P LVG  + +P L     ++ GV+ +
Sbjct: 263 IPALIVAVAQGGWLFLWVLLLFVIIQNLETYVLDPLLVGSSVNVPPLYQLLAVLSGVQLL 322

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           G++G  I P  +A   V+ +   +  K   EK +S
Sbjct: 323 GIIGALILPPWVAGAGVLLENLYLTPKLEAEKENS 357


>gi|126650595|ref|ZP_01722818.1| hypothetical protein BB14905_08393 [Bacillus sp. B14905]
 gi|126592751|gb|EAZ86750.1| hypothetical protein BB14905_08393 [Bacillus sp. B14905]
          Length = 350

 Score = 62.9 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 131/358 (36%), Gaps = 22/358 (6%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
              G  R++I+  I V+LY ++     +L   II +    + +    K  + +       
Sbjct: 6   RSNGFKRFIILVGIAVALYLMRSMINLILLTFIITYLMNQLTTKTTKKIRKYTPMNEKAV 65

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           TV++  L +  ++ +              + +  Q    +   ++        +E+    
Sbjct: 66  TVTLYLLLVAGIVAVI----------YKYLPIVTQQVTQLFDLIASFNLDPDDNEI--AR 113

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
              P   KI    +L   G+D   +  +  G I +   +S+I  +  L     +   I +
Sbjct: 114 YLAPTFEKIELGKYL-EQGVDITLKNITNIGKIIMQILISLILSLFIL----LEKKRIIE 168

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 +      + ++       IRS         IIA    ++   A  + G P  +A
Sbjct: 169 FTAKFKDSKIGPLYDELHYFSRIFIRSFGKVIEAQFIIAAVNCVLSVIALSIMGFPHLIA 228

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           LG++  I+ ++P  G  IS   +SI     G +     + +   +   I    L P L+ 
Sbjct: 229 LGIMLFILGLVPVAGVIISLIPLSIIAYSIGGLMYIVYILVIVMVLHAIEAYFLNPKLMS 288

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKEKISSN 359
               LP   TF  ++     +G+ GL IG P+ M L+ ++   S    K+  + +   
Sbjct: 289 AKTDLPIFYTFMVILFSEHFLGVWGLIIGIPLFMFLLDILGVTSSEESKQKMDDVEDK 346


>gi|296283040|ref|ZP_06861038.1| hypothetical protein CbatJ_05440 [Citromicrobium bathyomarinum
           JL354]
          Length = 398

 Score = 62.9 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 97/301 (32%), Gaps = 19/301 (6%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F PV +A+++     P+     S    +      +A+V  + +F+  ++  F   +    
Sbjct: 62  FLPVTAAVLLTVLLAPLADRLSSWGVPN-----TLASVLALVIFVAIVVLAFSAILQPAF 116

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L  ++          P  +  I       +     L++                +    
Sbjct: 117 SLFDRL----------PELIEQIGSRYREMQEEFAWLANANERLADLVGGSGATEVTLAG 166

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK--KISRIVP 208
               +   I     L  + +   + FF  +     ++    G   F    K  ++ R V 
Sbjct: 167 PSVFQQVAISAPVLLLEVMLTFLMAFFMVEARGRLRRNILFGRTSFGTSVKAARVLREVQ 226

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
             + +  L +  I +G G+V+    W  G+P+ +  G +  ++  IP   P++ T + + 
Sbjct: 227 DRVAAYILTVAWINLGVGIVVALGAWAMGLPAPIMWGGLATLLNFIPYVGPLAMTGLLVL 286

Query: 269 --LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
             L    ++F      +            + P ++G    +  +             G +
Sbjct: 287 FGLGTADSVFLGMIPAVAYITLHVFEANAITPAILGRRFTMNPVMILLAFSYFTWIWGAI 346

Query: 327 G 327
           G
Sbjct: 347 G 347


>gi|323136769|ref|ZP_08071850.1| protein of unknown function UPF0118 [Methylocystis sp. ATCC 49242]
 gi|322398086|gb|EFY00607.1| protein of unknown function UPF0118 [Methylocystis sp. ATCC 49242]
          Length = 346

 Score = 62.9 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 43/327 (13%), Positives = 109/327 (33%), Gaps = 17/327 (5%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             ++ +  + L  F   V + ++I         SF ++    +    +   ++++   +V
Sbjct: 29  AIMLGLLFWRLSEFLPIVFATIVIAVAWRGAAESFGARFGIPTGLSILTVALALVVGVVV 88

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L+      + +  E+                   D+P  +   +   +     + ++  
Sbjct: 89  TLMAFGGQLVRQYDEVA-----------------LDVPAAIELIQRHVEEHPWGRFVEKF 131

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                 +     I +          +     +F II   +   D    ++++ +L     
Sbjct: 132 VLDVDYSKAAAPIAQHVGAALGSLGNAFAMTLFAIIGAAYLAADPKGHAERVVALTPAHH 191

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                +  +     +R   +    + +      G A W  GVP+ +AL  I+  +A IP 
Sbjct: 192 REKVSRFLQRSGGSLRQWLILQLYVIVMNAFFAGVALWAFGVPAPLALATISGALAFIPY 251

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
              I    V   + +   + +A    L      F+    + PFL    + +P +   F +
Sbjct: 252 FGSIIALVVGALVALPHGVDSAALAALSIGAASFVEGYLITPFLQSRSLSVPAVVLLFCM 311

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +      G +G+ +      +++V ++
Sbjct: 312 LAFGALFGAMGVVLAVPATVVLSVAYE 338


>gi|227551511|ref|ZP_03981560.1| permease [Enterococcus faecium TX1330]
 gi|227179346|gb|EEI60318.1| permease [Enterococcus faecium TX1330]
          Length = 300

 Score = 62.9 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 71/209 (33%), Gaps = 4/209 (1%)

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
              A  +        ++     I  FFF  +            +  F  +++ +     K
Sbjct: 88  ASIALGYLQDIGKLAVAFAMSFILSFFFMIEKQKTIFFSRLFLKSEFSWFFQDLYYFADK 147

Query: 210 VIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAV 265
            + +         IIA+   L+   A    G    ++L ++  I+++IP    I     +
Sbjct: 148 FVNTFGLVLEAQFIIALLNTLLTTIALAAFGFHQLLSLAIMIFILSLIPVAGVIISCIPL 207

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           S     +G I +   + +   +   I    L P L+     LP   TF  L+   R  G+
Sbjct: 208 SFIAYSQGGIRDVVYILMTILVVHLIESYVLNPKLMSSKTDLPIFYTFVVLLVSERFFGV 267

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKE 354
            GL +G  +      + K   +     +E
Sbjct: 268 WGLIVGIPIFTFFLDVLKVKKIPNHSPRE 296


>gi|169333672|ref|ZP_02860865.1| hypothetical protein ANASTE_00056 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259666|gb|EDS73632.1| hypothetical protein ANASTE_00056 [Anaerofustis stercorihominis DSM
           17244]
          Length = 381

 Score = 62.9 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 46/316 (14%), Positives = 107/316 (33%), Gaps = 21/316 (6%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIG--FTSWPIYSS--------FISKKEESSTFLAVI 65
           ++ ++  +   L  F      A I+   F  +   +            +    S    +I
Sbjct: 32  VLGVVGTAFGILSPFIIGFALAFILNKPFVFFRDKALKVLIDKKKKKERVGLRSGLAILI 91

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V V  L ++   F+    +  +  LV  +   +++   +   + ++      +E    
Sbjct: 92  VYVLVALLLVILSSFVIPQLVTSISGLVDYIPQYSKNLFDM---IDNVVDKFIINETMLD 148

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            +    +  I +   + +  +  I  F S F    ++  +++I  I    +   D   + 
Sbjct: 149 TIQKASTTIISTMKTVLSGAVPAIVSFVSNFASNVINIAIAVIVSI----YLLIDKDHLI 204

Query: 186 QQ----LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            Q    + +           ++S +  K       G  I AI  G++      +  +P  
Sbjct: 205 YQYRLIIKAFFSEKKAKRILEVSDLTAKTFSDFIGGQIIDAIIIGVLCSIGLAVLKIPYA 264

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           + +G I     +IP   P   +  S+ +L     F A    ++  +   +    + P +V
Sbjct: 265 LLIGTIVGFTNIIPYFGPWIGSIPSVLILFMVRPFYALIFIVFVIVLQQVDGNIIYPHVV 324

Query: 302 GGPIKLPFLPTFFGLV 317
           G  + L  L   F ++
Sbjct: 325 GNSVGLGALFVTFSII 340


>gi|77465129|ref|YP_354632.1| membrane transporter [Rhodobacter sphaeroides 2.4.1]
 gi|77389547|gb|ABA80731.1| Conserved hypothetical membrane/transport protein [Rhodobacter
           sphaeroides 2.4.1]
          Length = 388

 Score = 62.9 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/322 (13%), Positives = 103/322 (31%), Gaps = 15/322 (4%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
             YF +    P++  L++  T  P+  +              + T     + +       
Sbjct: 50  GFYFARDVVLPLMIGLLLALTFSPVVRALQRIGIAPPITATALITALAAVIAV------- 102

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
               L    +   +  A + G  +      I     A    ++ +S     +  +   + 
Sbjct: 103 -SAFLLSGPVSDWINQAPRLGDQLRERAQTILDSFEAVRNASEQVSEITDSEDPTVQRVA 161

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA-YWK 201
                 +         I     ++++  +    F    G     +L              
Sbjct: 162 VQTPGILSSAVGSVASILTTIIVTLVLAL----FLLASGDLFYIKLIEGFPRFGDKKRAL 217

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI- 260
           +I   + + +    L +TII  G G+V+G   W  G+PS +   +   ++  +P    I 
Sbjct: 218 RIVYGIERRVSRYLLSVTIINAGLGVVIGLLMWGTGMPSPLVWAMAAFLLNFLPYIGAIA 277

Query: 261 -SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
               + ++ ++   ++  A  +         I  + + P ++G  ++L  +  F  ++  
Sbjct: 278 GVALSAAVAIVHYDHLTQALLVPALYLTATAIEGQLVTPIVLGRRLELNTVSVFVTVIFW 337

Query: 320 VRTMGLLGLFIGPVLMALIAVI 341
               G+ G  +    +  I V+
Sbjct: 338 GWLWGIPGALVAVPFLVCIKVV 359


>gi|326772906|ref|ZP_08232190.1| AI-2 transporter TqsA [Actinomyces viscosus C505]
 gi|326637538|gb|EGE38440.1| AI-2 transporter TqsA [Actinomyces viscosus C505]
          Length = 432

 Score = 62.9 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 48/345 (13%), Positives = 114/345 (33%), Gaps = 35/345 (10%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + I  V LY ++  FAP   AL +  T  P+ S     +                   + 
Sbjct: 32  LTIGAVGLYLIQDLFAPAFFALTLVVTVRPLVSWMTRHRVPR---------------VVA 76

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
               +       +    +  V   Q    +P++            +W +  +    + + 
Sbjct: 77  ATAAIALIFTFVVLLFAALAVAVAQLVDTLPQY------APKFQAIWKQVETQLNGMGVD 130

Query: 137 SETFLKT-----NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
               LK      +    +    S  G +     +  +  ++ +F  +    +   ++ + 
Sbjct: 131 QSAVLKQVTNVLDTSQLVMVAQSVLGQLTSASAMMGVMSMVVVFLMF---DTAKIEIRAA 187

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              +             + +RS ++  T+  +   ++     W   VP  +  GV++ I 
Sbjct: 188 ALGVLKPGMASALVSFCEAVRSYWMVSTVFGLIVAVINAVTLWYLNVPMAITWGVVSFIT 247

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             IP  G  +     +I  L+    + A  + L      F++   ++P   G  + L   
Sbjct: 248 NYIPNIGFVLGVVPPAILGLVDSGPWTALWVVLSYTAANFVIQSLIQPKFTGDAVGLNTT 307

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            TF  L+      G LG      ++A+   ++ ++++   + + +
Sbjct: 308 TTFLCLLFWSTVTGALG-----TILAVPLTLFVKALLIDSDPRSR 347


>gi|320187760|gb|EFW62435.1| Putative PerM family permease [Shigella flexneri CDC 796-83]
          Length = 349

 Score = 62.9 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/321 (13%), Positives = 115/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +    + ++  V +
Sbjct: 14  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRPVTITIVVVVML 73

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +      L  L         E +S +   N+               +       + +   
Sbjct: 74  IA-----LTALVGVLAASFNEFISMLPKFNKE--------------LTRKLFKLQEMLPF 114

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + +  F +   +       S++ +++ + F   +   +  ++  
Sbjct: 115 LNLHMSPERMLQRMDSEKVVTFTTALMIGLSGAMASVLLLVMTVVFMLFEVRHVPYKM-R 173

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+  +
Sbjct: 174 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGVIVWLGLALMGVQFALMWAVLAFL 232

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  GA IS     I +L+   ++    +     +   ++   L P ++G  + +  
Sbjct: 233 LNYVPNIGAVISAVPPMIQVLLFNGVYACILVGALFLVVHMVIGNILEPRMMGHRLGMST 292

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           +  F  L+     +G +G+ +
Sbjct: 293 MVVFLSLLIWGWLLGPVGMLL 313


>gi|256829469|ref|YP_003158197.1| protein of unknown function UPF0118 [Desulfomicrobium baculatum DSM
           4028]
 gi|256578645|gb|ACU89781.1| protein of unknown function UPF0118 [Desulfomicrobium baculatum DSM
           4028]
          Length = 379

 Score = 62.9 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 41/309 (13%), Positives = 88/309 (28%), Gaps = 15/309 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           ++ +L +L     P   AL++ +   P+         +S      +       +      
Sbjct: 26  VITTLGYLSDVLIPFAVALLLAYILNPLVYRV-QMFVKSRGLAIGLTLFFFFAVLGGLCW 84

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            +      E   +   +     +        + +P  +W +     +   P+        
Sbjct: 85  IVIPLMGREAAHMGRLISDLVSNSKLAEEAANRLPPDVWQA--LRDYFDTPEVRNFFRTD 142

Query: 140 FLKTNGIDFIPRFASRFGMIF------LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
              +     + +       I       L   +    +++ L F   D   +      +  
Sbjct: 143 SFISMAQSTLRKVLPGLMGIISGTYSVLLALVVPAVVLLYLIFLLMDFQKVRVAWKEMIP 202

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
             +              +   F G T IA   G+   + + L G+P  + LG    ++ +
Sbjct: 203 PQYRDSVVSFVEEFDVAMNRYFRGQTTIAGILGIFFATGFSLVGLPMGILLGFFVGLLNL 262

Query: 254 IPGGAPISFTA----VSIYLLIKGNIFNAT--CLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           +P    I         +I+ L  G  F        L   +   I D  L P ++G  + L
Sbjct: 263 VPYLQLIGLIPAVVLAAIHALETGQSFWVVMGMTGLVFVVVQIIQDAVLVPRILGKAMGL 322

Query: 308 PFLPTFFGL 316
                   L
Sbjct: 323 SPAVMLLSL 331


>gi|186683719|ref|YP_001866915.1| hypothetical protein Npun_R3576 [Nostoc punctiforme PCC 73102]
 gi|186466171|gb|ACC81972.1| protein of unknown function UPF0118 [Nostoc punctiforme PCC 73102]
          Length = 364

 Score = 62.9 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 45/342 (13%), Positives = 126/342 (36%), Gaps = 26/342 (7%)

Query: 9   QGIMRWMIMFIILVSLYF-----------LKGFFAPVLSALIIGFTS-WPIYSSFISKKE 56
             ++RW+I  ++   ++             +     ++ A ++ F   +P+  + + ++ 
Sbjct: 6   NQLLRWLIFTLLFPLVFLNGWLAFLLVKNFQPVVTILVLATLLAFVLNYPV--AILQRQG 63

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
               +   +  +S + + +   + L    + +  E+V  +           + L++    
Sbjct: 64  VKRGYAVSLVFISALIIIVALGITLVPIVLEQFNEMVKVLPQWIDSSEEKLQILNNWFFN 123

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
              +   +  L+           F+    +  I                    +++  F+
Sbjct: 124 HKLNVNLSHLLTQVTDQLPNELEFVTDKLLSIIVDTIDSVSDGL--------IIVVLTFY 175

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
              DG  I Q +    + L  ++ +++S+ + +  ++  +G   +A+  G+     +   
Sbjct: 176 LLLDGPRIWQGI---FKKLPGSFAQQVSQSIQQNFQNYLIGQVTLALLMGVSETLMFLAF 232

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
            V   +  G+   ++++IP G  +    V  +++   + + A  +F    +   ++D+ +
Sbjct: 233 QVQFSLLFGLGVGLLSLIPFGD-VVSVVVITFIIATHDFWLAVKVFAVAVVIDQLIDQAI 291

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
            P L+G    L  +     L+ G    G+LGL I   +   I
Sbjct: 292 APRLLGRFTGLRPIWVLIALLVGTNVGGVLGLLIAVPVAGFI 333


>gi|302060722|ref|ZP_07252263.1| membrane protein, PerM family [Pseudomonas syringae pv. tomato K40]
          Length = 334

 Score = 62.9 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 49/335 (14%), Positives = 104/335 (31%), Gaps = 16/335 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +++F+    +  L G  APVL+ L++ F    +       +      + V+ T+      
Sbjct: 1   VLLFVAFTLVLTLGGMLAPVLAGLVLAFLMHGLVGLLERLRMPEVAAVGVVFTL------ 54

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
                F+    +  +  +              P  L+     +        HL   + + 
Sbjct: 55  -----FIGALLVFLLVLVPLLWHQLITLFNEAPGMLAKWQSVLLLLPERYPHLVSDEQVL 109

Query: 135 ILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           +  E      G        F+     + ++  + ++ + I +FFF +D   I +      
Sbjct: 110 LAIEVARGEVGKIGQLALTFSISSLPLLVNLMIYLVLVPILVFFFLKDRHVIGRWARGYL 169

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI-- 250
                A   +++  + + I +   G  I     G V   A+   G+     L ++  I  
Sbjct: 170 PR-ERALLNRVADEMKRQIANYIRGKVIEIFICGGVTYIAFVALGLNYAALLAMLVGISV 228

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +    G   ++     I L   G       L +   +   +    L P L    + L  +
Sbjct: 229 VVPYVGAVVVTVPVALIGLFQWGWSDQFIYLMIAHGVIQALDGNVLVPLLFSEAVNLHPV 288

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
                ++      G  G+F    L  L   +    
Sbjct: 289 AIICAVLLFGGLWGFWGIFFAIPLATLFKAVLDAW 323


>gi|297572327|ref|YP_003698101.1| hypothetical protein Arch_1804 [Arcanobacterium haemolyticum DSM
           20595]
 gi|296932674|gb|ADH93482.1| protein of unknown function UPF0118 [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 414

 Score = 62.9 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 44/331 (13%), Positives = 111/331 (33%), Gaps = 21/331 (6%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           ++ ++ + ++ +   F P+  A  +     P+    +  +  + ++LA + T+ +    I
Sbjct: 31  LITVVGIGIHSVADVFTPLFLAFTLVLALRPLGQWLMRHR--APSWLASLTTLVLTLTLI 88

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             LL +  + +  + ++V +     +  +                  + + L        
Sbjct: 89  AGLLGITVWSLTPVPDMVVEYSSKFESTMYG----------------FLQWLQTQGINTK 132

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              ++     ++ I  +          +   +  + IA FF   D  +   +  +   + 
Sbjct: 133 DLASYASQVNVNSIVSWTFSLVGTLFSFGGLLSIVAIAAFFLTID--TTVTRSRAHIINK 190

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +  R   K +R  ++  T+  +    + G       +P          I   +P
Sbjct: 191 DHWNMGEALRGFEKRVRHYWIVTTVFGLVVAFIDGLVLEWMSIPLAWTWAYWAFITNYVP 250

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G  I      +  L+         +F+   +   ++   ++P L G  + L    TFF
Sbjct: 251 NIGFVIGVIPPMLIGLLDSGWQTMMWVFVAYTVINVVIQTFIQPKLTGDIVGLSPSVTFF 310

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            LV     +G+LG  +   L      ++ +S
Sbjct: 311 SLVVWTSIVGMLGSILAVPLTLFFKALFVDS 341


>gi|124024399|ref|YP_001018706.1| hypothetical protein P9303_27111 [Prochlorococcus marinus str. MIT
           9303]
 gi|123964685|gb|ABM79441.1| Domain of unknown function DUF20 [Prochlorococcus marinus str. MIT
           9303]
          Length = 356

 Score = 62.9 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 50/330 (15%), Positives = 111/330 (33%), Gaps = 21/330 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLK-------GFFAPVLSALIIGFTSWPIYSSFIS 53
           M   ++ P  +   +++ +  ++L+ L+        F    ++A +I F           
Sbjct: 1   MLGPLVFPIWLRLSLVLPLFALNLWVLRQLLLPLAPFPGLFVTAALIAFLLDIPSRWINQ 60

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
           +          +  V  + L ++  + L    + ++ +L++++          P WL   
Sbjct: 61  RLGLPRWLAIGVVAVLTVGLLVLAGVALVPRLIDQLGQLINEL----------PGWLVAA 110

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
            G +   + W      P      S   L       +    S+  +  L   L I    + 
Sbjct: 111 EGWVSRLQEWASGRGLPSEFGDFSSDLLTRLSG--VATQLSQQLLGILGATLGITINTLL 168

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKIS-RIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
           +             + +      P  W+++    +    R  F G  ++A+       + 
Sbjct: 169 VLVLAVFLLLGGDPITAGLARWLPDQWRELVVDTITGTFRGYFAGQVLLALILSGGQIAV 228

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           + L  +P  V   V+     +IP  + ++   VS  L ++ +      +         IV
Sbjct: 229 FTLLDIPFGVLFAVLIGFTTLIPYASALTIVGVSALLALQ-DPRMGLEILAAAIAVGQIV 287

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
           D+ ++P L+G  + L        L  G RT
Sbjct: 288 DQVIQPRLMGSIVGLQPAWLLIALPIGART 317


>gi|87123583|ref|ZP_01079434.1| hypothetical protein RS9917_06970 [Synechococcus sp. RS9917]
 gi|86169303|gb|EAQ70559.1| hypothetical protein RS9917_06970 [Synechococcus sp. RS9917]
          Length = 349

 Score = 62.9 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 106/290 (36%), Gaps = 13/290 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  F    L++ +I F    I S +++++        +I T+  +   ++  + L    +
Sbjct: 30  LAPFPGLFLTSALIAFLLD-IPSRWLNRRGLPRWSAILIVTLVTVGGVVLAGVTLVPRLI 88

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++ +L++ +       +    W++ +     +  L ++       L             
Sbjct: 89  DQLAQLINALPGW---LVAAEAWINRLQDLAASRGLPSEFGDLSSDLLTRVSRVASQLSQ 145

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +    +  G+      ++ + +++   FF   G +I+  L       +      +   
Sbjct: 146 RLLAILGATLGI-----TINTVIVLVLAVFFLLGGDAITAGLARWLPERWRQL---VVST 197

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           + +  R  F G  ++A+         + + G+P  V   V+  +  +IP  + ++  AVS
Sbjct: 198 ITRTFRGYFAGQVLLALILSAGQIVVFTVIGIPYGVLFAVVIGLTTLIPYASALTIVAVS 257

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             L ++ +      +         +VD+ ++P L+G  + L        L
Sbjct: 258 ALLAVQ-DPRTGLEILAAAIGVGQVVDQVIQPRLMGSIVGLQPAWLLIAL 306


>gi|221369132|ref|YP_002520228.1| hypothetical protein RSKD131_3295 [Rhodobacter sphaeroides KD131]
 gi|221162184|gb|ACM03155.1| Hypothetical Protein RSKD131_3295 [Rhodobacter sphaeroides KD131]
          Length = 389

 Score = 62.9 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/322 (13%), Positives = 103/322 (31%), Gaps = 15/322 (4%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
             YF +    P++  L++  T  P+  +              + T     + +       
Sbjct: 51  GFYFARDVVLPLMIGLLLALTFSPVVRALQRIGIAPPITATALITALAAVIAV------- 103

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
               L    +   +  A + G  +      I     A    ++ +S     +  +   + 
Sbjct: 104 -SAFLLSGPVSDWINQAPRLGDQLRERAQTILDSFEAVRNASEQVSEITDSEDPTVQRVA 162

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA-YWK 201
                 +         I     ++++  +    F    G     +L              
Sbjct: 163 VQTPGILSSAVGSVASILTTIIVTLVLAL----FLLASGDLFYIKLIEGFPRFGDKKRAL 218

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI- 260
           +I   + + +    L +TII  G G+V+G   W  G+PS +   +   ++  +P    I 
Sbjct: 219 RIVYGIERRVSRYLLSVTIINAGLGVVIGLLMWGTGMPSPLVWAMAAFLLNFLPYIGAIA 278

Query: 261 -SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
               + ++ ++   ++  A  +         I  + + P ++G  ++L  +  F  ++  
Sbjct: 279 GVALSAAVAIVHYDHLTQALLVPALYLTATAIEGQLVTPIVLGRRLELNTVSVFVTVIFW 338

Query: 320 VRTMGLLGLFIGPVLMALIAVI 341
               G+ G  +    +  I V+
Sbjct: 339 GWLWGIPGALVAVPFLVCIKVV 360


>gi|309776898|ref|ZP_07671868.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308915309|gb|EFP61079.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 373

 Score = 62.9 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 45/305 (14%), Positives = 108/305 (35%), Gaps = 11/305 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L+    P +   ++ +   P+      K    +         S++ L++  L+FL    
Sbjct: 44  MLRSVMQPFVIGFVLAYVMHPLVEFLEKKGIPKN--------FSIIALWVCVLVFLIVML 95

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           ++ M  L  K+       I    W+S+    +   + ++   S   ++  + +++   + 
Sbjct: 96  VMLMPVLYDKINEFMTSMIDGVVWISNKIKTLGNMKDFSLVNSITNNIVNMLQSY--DDW 153

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +           L+   +I+F II   +   D   I   L     HLF         
Sbjct: 154 VPQLVSSLPGLMNTVLNMVTNILFSIIIAIYMLFDFDRIKLGLRKFI-HLFFKNSDVYLH 212

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + + +      + I+ + + +   + Y++ G    + +G++T+   +IP        ++
Sbjct: 213 EIDQNVTVYLKSLIILMLIKFVEYSAFYFMIGHQDWLIIGLLTSFGVIIPYLGGTIANSI 272

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            I   +     N   L +   I   +    + P +      +  L T F +  G    G 
Sbjct: 273 GIITALTLPPSNIVALIIGIMILSNVDAYVISPLVHEKRSAMGPLVTLFAVFAGGVISGA 332

Query: 326 LGLFI 330
           +G+ +
Sbjct: 333 VGIMV 337


>gi|323528017|ref|YP_004230169.1| hypothetical protein BC1001_3697 [Burkholderia sp. CCGE1001]
 gi|323385019|gb|ADX57109.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1001]
          Length = 652

 Score = 62.9 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 58/167 (34%), Gaps = 3/167 (1%)

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           + I +++ +F   +      + +   G          I+    ++ R  F+    + +  
Sbjct: 193 TFIVLVVTIFILLQREDLRDRLISLFGSRDLHRTTTAINDAAVRLSR-YFVAQLGVNLSA 251

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFL 283
           G V+     + GVP  +  GVI A++  +P  G    +  A  +   I+     A    +
Sbjct: 252 GGVIAIGLAIIGVPGALLFGVIAALLRFVPYIGIWIAAILAFILAAAIQPQWTMAVYTLI 311

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +   +  +   P L G    L  L      +      G +GL +
Sbjct: 312 LFIVVDVVAGQIAEPLLYGHRSGLSPLAVVVAAIFWSWLWGPIGLVL 358


>gi|163746940|ref|ZP_02154297.1| Conserved hypothetical membrane/transport protein [Oceanibulbus
           indolifex HEL-45]
 gi|161380054|gb|EDQ04466.1| Conserved hypothetical membrane/transport protein [Oceanibulbus
           indolifex HEL-45]
          Length = 371

 Score = 62.9 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 57/337 (16%), Positives = 120/337 (35%), Gaps = 15/337 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  +++  + V+ YF K    P+L   II  T  P+  S              +  V
Sbjct: 10  RRLLEVLVLIALFVTAYFAKDLLLPILLGFIIALTLSPLIRSLEKL-----GIAPPLGAV 64

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
            ++ L  + +  L       +      +  + N+    +  W+  +     A+E   +  
Sbjct: 65  MLIGLVGLVIFVLAGLSAGTVATWADDIPSMGNEIRRKLQGWVQTVENVRSATEQVEQIT 124

Query: 128 SHPQSLKILSETFLKTNG-IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +         E  +K  G ++      +R G       +  +F++ +   FY       +
Sbjct: 125 AENGGNGAAEEVVVKQPGLLNNAMTAGARIGGTVAVALVLALFLLASGDMFY------LK 178

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            + S           K    V + +    L +TII  G G+ +G   +  G+P     G+
Sbjct: 179 LVQSFQTFTGKKRALKAVYDVERRVSRYLLTITIINAGLGISVGLYLFALGLPVPYVWGL 238

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
              ++  +P  G  I    V  Y +    ++  A    +   I   +  + + P+LVG  
Sbjct: 239 AAFLLNFLPYIGGVIGAVLVGAYAIASFDSLGYAILAPIGYQILTGVEGQFITPYLVGRR 298

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++L  +  F  +V      G+ G  +    + +  VI
Sbjct: 299 LELNTVAVFLTVVFWGWLWGIAGALVAVPFLVVFKVI 335


>gi|300022035|ref|YP_003754646.1| hypothetical protein Hden_0504 [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299523856|gb|ADJ22325.1| protein of unknown function UPF0118 [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 604

 Score = 62.9 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 50/342 (14%), Positives = 103/342 (30%), Gaps = 10/342 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK--EESSTFLAVIATVS 69
              ++  +++ +L   +    P+  A+I  F   PI          E  S F  V+AT  
Sbjct: 13  AALVVAALVIATLVLGRAILVPLALAVIGCFILVPIVRWLEEHSVPEWLSVFSVVVATTG 72

Query: 70  VMCLFIVPLLFLFYYGMLEM----KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           ++    + L         E+      ++ KV        P       I       ++  +
Sbjct: 73  LLLGASIALSSQLLSLTAELPAYRSNVMDKVHAVIGSSAPSGVVSRAIDAVETYQKMLNR 132

Query: 126 HL--SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            L     QS +   +   K                I  +    +    +   F       
Sbjct: 133 ELKLGGEQSTEPDGKPETKVVVAQETTSDTWHGIQILAEPLAQMALTFLFTLFLLAQYRD 192

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  ++  +                 + + + F G  ++    G+ +G    + GVP+   
Sbjct: 193 LRDRIVRIFGTDNMTETTSAMSDAGERLSALFTGQVMLNASFGVFVGCVLMIVGVPNAPL 252

Query: 244 LGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            GV+  +M  +P           + +   +      A C     AI   ++ + L PF +
Sbjct: 253 WGVVAFVMRFVPFIGVYVAAIPPILLAAAVDPGWTKAICTLALFAIGEPVMGQVLEPFFL 312

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           G    L                G +GL +   L  ++ V+ +
Sbjct: 313 GKRAGLSPFAMILAASFWTLVWGPIGLVLAAPLTLVVVVLGR 354


>gi|182418999|ref|ZP_02950255.1| permease [Clostridium butyricum 5521]
 gi|237668112|ref|ZP_04528096.1| permease [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377282|gb|EDT74850.1| permease [Clostridium butyricum 5521]
 gi|237656460|gb|EEP54016.1| permease [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 342

 Score = 62.9 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 63/165 (38%)

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
            LS+  + I +++F  DG  +  ++  +         + I   + KV++    G   +  
Sbjct: 156 ILSLAVIPIIIYYFMCDGDRLFLRMMLILPTNKREVTQNIVMDINKVLKRYISGQLYLCG 215

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
             G++         +   + + +  A+  +IP   PI     ++ + +  +   A  + +
Sbjct: 216 IIGILTFILLLSLQIKFPLWIAIFNALFNIIPYFGPIFGMVPAVIVALMISPAKALWVLI 275

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
              +   I    L P + G  I++        L+ G +  G +G+
Sbjct: 276 GMILIQQIEGNILSPKITGDSIEMHPFVIIVLLLIGDKFGGFIGM 320


>gi|119960782|ref|YP_949660.1| permease [Arthrobacter aurescens TC1]
 gi|119947641|gb|ABM06552.1| putative permease [Arthrobacter aurescens TC1]
          Length = 354

 Score = 62.9 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 51/304 (16%), Positives = 110/304 (36%), Gaps = 10/304 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            ++   +  ++  L+     + +AL I    +P+       K       AV+A      +
Sbjct: 25  VLVALALGSAVITLRYSLTLIFAALFISLGLYPLVRWLERWKLSRGG--AVLAVAVGFLV 82

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +V L+      ++E    + +V+ ++   +    W  D  G +          +    L
Sbjct: 83  LVVVLIRFIVPILVEEGAALVRVLPSSFDAVGEQEWFRDFNGSLGG--------ALSPLL 134

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           + L  +    N    I   A + G   ++   ++IF+++   +F      +   L +L  
Sbjct: 135 EWLETSAADPNVWLAIGGGAVQVGYNVVNGTFAVIFVVVLTLYFVAGHEVMKSNLYALVP 194

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                 +  IS  +   +     GM+I+A+   +       +AG      L V+   + +
Sbjct: 195 ASRRESFADISETIIASVGKYLSGMSILALLNAIFTFIVLSVAGARYAAVLAVLAFPITL 254

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP       TA+   + +  +   A  +FL   + + +    L P +VG  I +P     
Sbjct: 255 IPLVGSAISTAIITVVSLFTSPATALVVFLVMLVYMQVEAYVLTPRVVGKAISIPGSLVL 314

Query: 314 FGLV 317
            G +
Sbjct: 315 IGAM 318


>gi|222528450|ref|YP_002572332.1| sporulation integral membrane protein YtvI [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222455297|gb|ACM59559.1| sporulation integral membrane protein YtvI [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 371

 Score = 62.9 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 65/360 (18%), Positives = 115/360 (31%), Gaps = 24/360 (6%)

Query: 1   MRETMLNPQGIMRWMIMFI---ILVSLYFLKGF----------FAPVLSALIIGFTSWPI 47
           MRE   N   +    ++ I   I    Y +K F          F PV+  L I     P+
Sbjct: 2   MREFTKNRFVVAMIYVIIISAFIFSCAYLIKTFDLFVRFMIKAFIPVIIGLFIAVVFEPL 61

Query: 48  YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
                  K    T  A++  + +  +    L    Y  + E   LV+ +   +   I   
Sbjct: 62  LKYMEKNKVNR-TISAILILIVLNIILGFMLAEGIYILVNECMRLVASLQNIDYDKIY-- 118

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI---FLDYC 164
                +       +     L  P    I S     TN ++ I   + +   +    L   
Sbjct: 119 ---QALDKLFSNVKNIYSGLPGPIVNFIQSGVDELTNVLNQIATMSLKVIKVIPATLKGV 175

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
               F +++ FFF RD   +   L              I+  V   +        I+AI 
Sbjct: 176 TVWFFSVLSAFFFMRDRHKMRSWLIQNFSVQIYKELSSIAFKVIDSVVDYAKSQIILAIL 235

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIM-AMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
             L       +   P  + + ++  +M  +   G+ I          I G+      L +
Sbjct: 236 MFLSGLVGLSIIKAPYFLVVSLLLGLMSIIPIIGSGIILLPWIAGSFIAGDTNFGIKLLI 295

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              I L I +      +V   + +    T   +  GV   G  G  IGP+L+  +  +++
Sbjct: 296 VYLIILGIRE-FASIKIVANQVGISTFTTLVSIYAGVEVFGAWGFVIGPLLVVFLKAVYE 354


>gi|228900544|ref|ZP_04064767.1| UPF0118 membrane protein [Bacillus thuringiensis IBL 4222]
 gi|228859095|gb|EEN03532.1| UPF0118 membrane protein [Bacillus thuringiensis IBL 4222]
          Length = 292

 Score = 62.9 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 1/151 (0%)

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            +F            +          +IA+   ++   A  + G P  + L V+  ++ +
Sbjct: 133 KIFYEEIAYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLLVLAVMVFLLGL 192

Query: 254 IPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP  G  IS   + I     G +     + ++  +   +    L P  +     LP   T
Sbjct: 193 IPVAGVIISLFPLCIIAYNVGGVMYVVYILVFITVIHALESYFLNPKFMSAKTNLPIFYT 252

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           F  L+     +G+ GL IG  +   +  +  
Sbjct: 253 FMILIFSEHFLGIWGLIIGIPIFIFLLDVLD 283


>gi|255531139|ref|YP_003091511.1| hypothetical protein Phep_1233 [Pedobacter heparinus DSM 2366]
 gi|255344123|gb|ACU03449.1| protein of unknown function UPF0118 [Pedobacter heparinus DSM 2366]
          Length = 370

 Score = 62.9 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 49/300 (16%), Positives = 102/300 (34%), Gaps = 14/300 (4%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           P+ +    K     +  A+I+ V ++ +    L FL        K+       A      
Sbjct: 48  PMANFMEQKWRFKRSIAAIISVVLMIGVISSILYFLANQLTDLWKDWPLLKHQAETSFHD 107

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           V  W+S   G         K + + ++    +     T     +   +S    +      
Sbjct: 108 VQHWISRTFGVNA-----QKQIDYLKNSASSAVATSATVLGATLLTVSSTLLFLSFLLLF 162

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           +   +      F          L S+ E        +I R +  +I+    G+ +     
Sbjct: 163 TFFILNYRGILF--------NFLSSVFEEKHKQKVSEIVRQIQYIIKKYITGLFLQMFIV 214

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLW 284
            +++    W+  V   V LG+I+ I  ++P  G   +     +             + + 
Sbjct: 215 TVLMIFTLWVLNVKYAVLLGLISGIFNIVPYLGIFTALLISVLITFATAGAAKVLLVLIA 274

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                 +    L P +VG  +K+  L  F G+V G    G+ G+F+    +A++ +I+ +
Sbjct: 275 FVSIHALDGNVLMPLVVGSKVKINALFAFIGIVVGEMIWGISGMFLCIPYLAMLKIIFDK 334


>gi|227486232|ref|ZP_03916548.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235863|gb|EEI85878.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
           51172]
          Length = 408

 Score = 62.9 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/269 (10%), Positives = 85/269 (31%), Gaps = 1/269 (0%)

Query: 48  YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
           +           +++   A V+++   ++P L      + E        ++   +G  + 
Sbjct: 77  HEKLRRSFSLILSWIIFFAMVTIVLTVLIPELSRAVGVISENIPAFMNSLIDFINGSKLL 136

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
             +S         E+  + +S   +  +       ++ I+      +      L   +  
Sbjct: 137 TNVSKFIV-TRLEEINIERISDSFTKILQDFFRPDSDFINKTGSIINSVSQGILSLSIGF 195

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           +F +       +     ++ + +            ++++             +  +  G+
Sbjct: 196 VFSLYVSMNKTKLKNGAARLVFANLSEKTARQIVYVAKLSYDSFARFLETRILSCLALGV 255

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
                 W+  +PS   + ++     MIP       T++ I L+   +   A    ++  I
Sbjct: 256 ACFIGMWVLRLPSAGMISILMGAFDMIPYIGAFLATSIGIILIFTYSPGKALVFLIFILI 315

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
              +  +   P ++G    LP +  F  +
Sbjct: 316 LQNVQQQLFYPLVIGKHQGLPPIWIFVSV 344


>gi|269964566|ref|ZP_06178805.1| putative permease protein [Vibrio alginolyticus 40B]
 gi|269830693|gb|EEZ84913.1| putative permease protein [Vibrio alginolyticus 40B]
          Length = 356

 Score = 62.5 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 58/344 (16%), Positives = 121/344 (35%), Gaps = 34/344 (9%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            LYF K    P++ +  I     P  +    K    +       TV +   F+V    + 
Sbjct: 25  GLYFAKPILLPIVLSTFISLLCSPFINYLEDKGLPRA------ITVVLTLSFLVGASIIG 78

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS------LKIL 136
              M E                P  +W S++P  +         ++   +      L I 
Sbjct: 79  LAAMSE----------------PAKQWWSELPSIVKNVSQEVSEVTKASADHLNTPLNIA 122

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           ++  +   G + +                  + ++  ++F    G S+ ++  S      
Sbjct: 123 NDMSMDEVGNNTVFSLVKTLATTTPTILTQAMIVLFMVYFMLNHGRSLFRKSVSYLHGFA 182

Query: 197 PAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++ + + K +      +T++  G GL +G+ +++ G+      G    +M   P
Sbjct: 183 KQRQAIELVKALQKDLSRYIGTITLVNAGLGLSVGAVFFVLGLEDPFLWGAFAGVMNFAP 242

Query: 256 GGAPI---SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
              P+          YL ++   F  T + ++  +   I  + + P L+G    L  L  
Sbjct: 243 YLGPVISMVSFGFVAYLQLESVSFMLTVVSVY-LLLNLIESQFVTPTLLGKRFNLNPLVI 301

Query: 313 FFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKEK 355
           F  LV      G +GL IG P+L+ +  ++ +  +    +N+ K
Sbjct: 302 FVWLVFWGWLWGGMGLLIGVPLLVCINILVDRLELCQSTQNQAK 345


>gi|227524980|ref|ZP_03955029.1| permease [Lactobacillus hilgardii ATCC 8290]
 gi|227087791|gb|EEI23103.1| permease [Lactobacillus hilgardii ATCC 8290]
          Length = 320

 Score = 62.5 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 81/242 (33%), Gaps = 7/242 (2%)

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFG---MIFLDYCLSIIFMIIALFFFYRDG 181
            +L    +L+ ++E   ++N +  +    S             +++   +I  FFF  + 
Sbjct: 75  SNLPDDNTLRWVNELIKQSNVMAQVKNGVSLIWRYITGVGTMGITLFLSMILSFFFAIEK 134

Query: 182 FSISQQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            ++        +  F  +++      +               IAI   ++         +
Sbjct: 135 KTMYNFSHLFLDSDFSWFFQDLYFFGKKFVATFGVVIEAQFFIAIVNTVLTTIVLAFMHL 194

Query: 239 PSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P    L ++  I+++IP  G  ISF  +S+     G + +   L +   +   +    L 
Sbjct: 195 PQLAVLALMVFILSLIPVAGVIISFIPLSLVGYSVGGLQDVLYLIITIVVVHALEAYVLN 254

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           P  +     LP   TF  L+ G    G+ GL  G  +   +  I             K  
Sbjct: 255 PNFMASKTNLPIFYTFVVLLVGEHFFGVWGLICGVPVFTFLLDILGVKRHNEPLPPAKPD 314

Query: 358 SN 359
           + 
Sbjct: 315 TK 316


>gi|307725764|ref|YP_003908977.1| hypothetical protein BC1003_3746 [Burkholderia sp. CCGE1003]
 gi|307586289|gb|ADN59686.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1003]
          Length = 652

 Score = 62.5 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 59/167 (35%), Gaps = 3/167 (1%)

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           + I +++ +F   +      + +   G          I+    ++ R  F+    + +  
Sbjct: 193 TFIVLVVTIFILLQREDLRDRLISLFGSRDLHRTTTAINDAAVRLSR-YFVAQLGVNLSA 251

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFL 283
           G V+     + GVP  +  GVI A++  +P  G    +  AV +   I+     A    +
Sbjct: 252 GGVIAIGLAIIGVPGALLFGVIAALLRFVPYIGIWIAALLAVFLAAAIQPQWTMAVYTLI 311

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +   +  +   P L G    L  L      +      G +GL +
Sbjct: 312 LFIVVDVVAGQIAEPLLYGHRSGLSPLAVVVAAIFWSWLWGPIGLVL 358


>gi|330465325|ref|YP_004403068.1| hypothetical protein VAB18032_06720 [Verrucosispora maris
           AB-18-032]
 gi|328808296|gb|AEB42468.1| hypothetical protein VAB18032_06720 [Verrucosispora maris
           AB-18-032]
          Length = 393

 Score = 62.5 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 63/166 (37%), Gaps = 1/166 (0%)

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
             +DG ++                 +  R+  + + S   G  +IA  + + +G A  L 
Sbjct: 195 LIKDGRAMWHWTLRRMTGPNREVAAEAGRVGWRTLGSYTRGTMLIAAIDAIGIGLALVLL 254

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KT 295
           GVP    L +IT I   +P        AV++ + +  N      L L   I +  ++   
Sbjct: 255 GVPLAFPLALITFIGGFVPIIGATVAGAVAVLVALAANGPTTALLTLAAVIAVQQIEGNL 314

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           L P ++   ++L  +     +  G    G+ G F+   + A+   +
Sbjct: 315 LEPLVMKRQVRLHPVVILLAVTAGTLIAGIAGAFVAVPIAAVAWRV 360


>gi|114798789|ref|YP_759795.1| hypothetical protein HNE_1074 [Hyphomonas neptunium ATCC 15444]
 gi|114738963|gb|ABI77088.1| putative membrane protein [Hyphomonas neptunium ATCC 15444]
          Length = 349

 Score = 62.5 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/335 (11%), Positives = 101/335 (30%), Gaps = 20/335 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++  + +  I ++ + ++  F  + +A ++      I  +               A + 
Sbjct: 13  RLVLVLFIGGIALAAWVVRDAFLLMFAATLLAIAVHGIADALTRAAPLPRQGALAAAALL 72

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +       L         E+  +                    +PG    ++   +    
Sbjct: 73  MTGSVAAILWIFGAQLASELSGVTD-----------------RLPGAWQRAKETLEAHPA 115

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF---FFYRDGFSISQ 186
             +L    E     +    +    +  G   L +   +   ++ +F   F      S   
Sbjct: 116 GSALVAEIEAVAAGDSGGSLRGMLTDAGGYALPFASGLTSALLVIFIAAFLTTSAVSTRN 175

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +  +          K      + ++   LG++I  +    V+    WL GVP+ + L +
Sbjct: 176 GVLLVLPKGVDEKVGKALNASGRALKRWLLGISIDMVIITAVMALTLWLLGVPAFLGLAL 235

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           I  +   +P   P+      + L    +   A    +       +    + P +      
Sbjct: 236 IAGLAQFVPTVGPLLAAVPGVLLAFTVSPMTALWTAIAYFTVSQLEANLVYPLIQKETTS 295

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +      F ++     +G LG+ +   ++ +++V 
Sbjct: 296 ISPALNLFAILAFGMLLGPLGVLLATPILVVLSVF 330


>gi|150392313|ref|YP_001322362.1| hypothetical protein Amet_4632 [Alkaliphilus metalliredigens QYMF]
 gi|149952175|gb|ABR50703.1| protein of unknown function UPF0118 [Alkaliphilus metalliredigens
           QYMF]
          Length = 395

 Score = 62.5 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 46/308 (14%), Positives = 100/308 (32%), Gaps = 22/308 (7%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI-----------SKKEESSTFLAVIATV 68
           I + L  LK   +PV+  + I +   P    F            +KK+       V   +
Sbjct: 41  IFLRLGILKRILSPVIIGIFIAYLLNPGVRWFENYIYCRVEYIANKKKLLRVLSVVTMYL 100

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ L +  ++F+       + +++ ++     +   +    S+       S +  +  +
Sbjct: 101 LVIGLIVTVIIFVAPQIGNNISDILRRMPEYINYSNDLINHWSEELDLRNLSNVTDQFEN 160

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +   +       L+    + I    S      L++ L I+      F+   D  S  +  
Sbjct: 161 NVNDIFNRVSAILEYILENIIVSIMS-ITSGVLNFVLGIVIS----FYLLGDKESFKKGT 215

Query: 189 DSLGEHLFPA----YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           + +             K   R    +     +G ++ +    ++      + G+   + +
Sbjct: 216 ERVLRATLADKTVNKMKDFGREADMIFSKFIIGKSLDSFIIAIMCLIGLQIMGIRYALLI 275

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            VI  I  MIP  G  I      I       +  A  L     ++ F     L P ++G 
Sbjct: 276 SVIIGITNMIPYFGPFIGAVPAVIITFFDSPVKAAWVLLFILGLQQFDG-LILGPKILGD 334

Query: 304 PIKLPFLP 311
            + L  + 
Sbjct: 335 SVGLSPVW 342


>gi|229138654|ref|ZP_04267236.1| UPF0118 membrane protein [Bacillus cereus BDRD-ST26]
 gi|228644773|gb|EEL01023.1| UPF0118 membrane protein [Bacillus cereus BDRD-ST26]
          Length = 292

 Score = 62.5 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 1/151 (0%)

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            +F            +          +IA+   ++   A  + G P  + L V+  ++ +
Sbjct: 133 KIFYEEIAYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLLVLAVMIFLLGL 192

Query: 254 IPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP  G  IS   + I     G +     + ++  +   +    L P  +     LP   T
Sbjct: 193 IPVAGVIISLFPLCIIAYNVGGVIYVVYILVFITVIHALESYFLNPKFMSAKTNLPIFYT 252

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           F  L+     +G+ GL IG  +   +  +  
Sbjct: 253 FMILIFSEHFLGIWGLIIGIPIFIFLLDVLD 283


>gi|167772872|ref|ZP_02444925.1| hypothetical protein ANACOL_04260 [Anaerotruncus colihominis DSM
           17241]
 gi|167664805|gb|EDS08935.1| hypothetical protein ANACOL_04260 [Anaerotruncus colihominis DSM
           17241]
          Length = 367

 Score = 62.5 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 114/326 (34%), Gaps = 9/326 (2%)

Query: 24  LYFLKGFFA----PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           LYFL  +      P+   L I   + P   +   K        A+I+ +    L    L 
Sbjct: 29  LYFLVRYLLVWTLPLFFGLAIAALTRPAALTLTKKTRLGEKSAAIISLLLFYLLAAALLG 88

Query: 80  FLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGM--WASELWTKHLSHPQSLKIL 136
                 + ++ EL+ ++ VL  Q+  P+   L+    G+         + L         
Sbjct: 89  LFLTILLAQLYELLDRLPVLYTQNIAPLLDRLAGWFYGLAGRFDPGAEEGLERFSQAVSD 148

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           +      +G   +   A+          ++ +F I+       +  ++   + SL    +
Sbjct: 149 AVRQAAVDGSAHLVTIAAGVAAKLPMLLITAVFSIVVSILTAANYRAVGAAVCSLVPKRW 208

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
               ++  R + + I        I+     + L     L G    + +  + A++ ++P 
Sbjct: 209 QPRVRETQRFLRETIWKLVRAYIILLAITFVELSLGLGLLGFDYVLPVAAVIAMLDILPL 268

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G           L+  G++       L     + ++   L P +VGG I L  + T   
Sbjct: 269 VGTGTILVPWGAALIAGGDM-PGGIGLLLLFGVIEVLRNILEPRIVGGQIGLHPIVTITS 327

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           +  G++  G  G+   PV++ L+  +
Sbjct: 328 MYAGLKIAGFAGMLAAPVVVMLVRHL 353


>gi|297570507|ref|YP_003691851.1| protein of unknown function UPF0118 [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296926422|gb|ADH87232.1| protein of unknown function UPF0118 [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 351

 Score = 62.5 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 57/347 (16%), Positives = 114/347 (32%), Gaps = 23/347 (6%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-----WPIYSSFISKKE 56
           R    +PQ ++   ++ I  + L F     AP+L+A+II +       W           
Sbjct: 10  RRYFSDPQAVILTFLLLIGTLVLLFFGRMLAPLLTAIIIAYLLEGPIAWMEDKGVRRIVG 69

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
            S   L  +    V    I PLL+         KEL   +    Q  + +P     I   
Sbjct: 70  VSFVLLLFVVLALVGSFAIFPLLWA--QIADLFKELPHYIARGQQVLLALPERYPAISE- 126

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
                         + +     T + T G   +    +      +   + ++ +   +FF
Sbjct: 127 -----------DQVREIVNTVRTQVGTLGQRMLAISLASV-ANLITLLVYLVLVPFLVFF 174

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
             +D   I + +         A  + +   +   + +   G     +  G+V    + L 
Sbjct: 175 LLKDKKIILEWVSLRLPRERSA-AQYLWHDLDVQMGNYVRGKFWEILIVGVVTYLCFALL 233

Query: 237 GVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATC-LFLWGAIELFIVDK 294
           GV   + L  +T +  +IP  GA +    V++    +  + +    L +   +   +   
Sbjct: 234 GVDYALLLATLTGLSVLIPYVGAVVVTIPVALIGYFQWGMGSELFWLLVIYGVIQGLDGN 293

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L P L    + L  +     ++      G  G+F    L  L+  +
Sbjct: 294 VLNPLLFAKVVNLHPVAIIAAILVFGGLWGFWGIFFAIPLATLVNAV 340


>gi|160881956|ref|YP_001560924.1| sporulation integral membrane protein YtvI [Clostridium
           phytofermentans ISDg]
 gi|160430622|gb|ABX44185.1| sporulation integral membrane protein YtvI [Clostridium
           phytofermentans ISDg]
          Length = 344

 Score = 62.5 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 46/349 (13%), Positives = 131/349 (37%), Gaps = 6/349 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+ +    + ++    +  + + + +L   F P L A  I +   P+      K +    
Sbjct: 1   MKLSKNKRKLLLTAGTIIAVYIGMKYLLPLFVPFLFAYFIAWLLRPVVGFLHRKLKIPLV 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
                  + ++ +  V L +L      ++   +  + +  Q+       +      ++  
Sbjct: 61  VGGGFGVLLLLLVISVILCYLGRILFNQVVLFLRNIPIYQQYFTQQVEIICVTGDKLFGF 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +  +  L     ++ L + +++ N +  +     +  +   ++    + +++A     +D
Sbjct: 121 KDGSLKLVVNDGMETLVK-YVQMNILPKMTVQTIKLAIGLAEFLAIFLIILVATILIIKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              + +    L +  F     KI++ +     +      I+     ++    +++   P 
Sbjct: 180 ---MEEYKVGLRKSEFYPAVHKITQKLSDTGIAYMKTQMILMSIIAVINAVGFFILKNPY 236

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            + +G+   I    P  G+ +     +I +L++    +A  +     +   IV + L P 
Sbjct: 237 ALLIGLAVGIFDGFPVLGSGLILIPWTIVMLLQKKFMHAAVIMSIFLLCQ-IVREILEPK 295

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L+G  I +  + +   +  GV+  G++G F+GP+ + +I  +       
Sbjct: 296 LLGDKIGVKPIYSMIAMYVGVQLFGVIGFFLGPLSLVIIKTVIATYAEE 344


>gi|326693483|ref|ZP_08230488.1| permease [Leuconostoc argentinum KCTC 3773]
          Length = 332

 Score = 62.5 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 53/344 (15%), Positives = 113/344 (32%), Gaps = 27/344 (7%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
             +  +   R+ ++  I+V ++ L+ F + +L   I  + +           + S     
Sbjct: 5   ATVKNRRFYRYFVLLAIVVLIFLLRQFMSLLLLTTIFSYLALNAGKRVQRIFKLSRGVA- 63

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
                 +  ++IV + FL +        L+ +V             L+  P       L 
Sbjct: 64  ------ISLVYIVFVGFLIWAIDHGANTLIHQVKSMI--------VLATDPSWRSHGILK 109

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
             + +  Q     S   + T  +  I +       + L    S IF I            
Sbjct: 110 EVYKNFHQYTNSFSTEQILTKALSQINQLGHIIYELILALLFSFIFCITY--------PQ 161

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVI---RSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           +           +  ++ +   I+ + I      F    +I +     + +       P 
Sbjct: 162 LRNWSLHFLHSPYKKFFGEFYIILHRFIIILGRLFEVQLLICVINTAAMVAVLAFLQFPY 221

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +   ++  I+ +IP  G  +S   ++I   I GN      + +  A+  F+    L P 
Sbjct: 222 LLGFTIMIFILGLIPVVGVLVSLVPLTITAFIIGNWHTVLVILIAVAVIHFLESYFLHPH 281

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            +     +P L     L+   +  G+ GL IG  ++  +   +K
Sbjct: 282 FMSHRTHMPILVILLNLIIMEKLFGVWGLVIGLPILTFLLDFFK 325


>gi|160914220|ref|ZP_02076441.1| hypothetical protein EUBDOL_00230 [Eubacterium dolichum DSM 3991]
 gi|158433847|gb|EDP12136.1| hypothetical protein EUBDOL_00230 [Eubacterium dolichum DSM 3991]
          Length = 368

 Score = 62.5 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 56/319 (17%), Positives = 120/319 (37%), Gaps = 11/319 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            +  +     P L  L+I +  +P    F+ +K  S         VS++ L+ V + FL 
Sbjct: 47  WVAIVLSIIKPFLIGLVIAYVMYP-MVRFLQQKGLSKN-------VSIVLLWGVAIAFLA 98

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              ++ M  L  K+            W+SD    +   E ++   +  +++  +   +  
Sbjct: 99  ILLIVLMPLLYDKISGFIVSMTEGVLWISDKIKEIGQFENFSLIDNLTKNIINMISAY-- 156

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              +            + +D   +I F II   +   D  +I   + S    LFP+  +K
Sbjct: 157 EGWLPQFVATLPNIMSVLVDSVTTIGFSIIIAIYMLADFKTIRHNIKSTFVALFPSS-EK 215

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
               + + +      M +I + +     + Y+L G P  V +G+++++ ++IP       
Sbjct: 216 YLYEIDENVTVYLKSMIVIMLIKLFEYWAFYYLIGHPDWVIIGILSSLGSLIPYLGGTIA 275

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
            ++ I   +  +      L L   +   +    + P +      +  L T F +  G   
Sbjct: 276 NSIGIITALTLSPLRILLLLLGIFVLSHMDAYVISPLVHEKRSAVGPLVTLFVIFAGGVI 335

Query: 323 MGLLGLFIGPVLMALIAVI 341
           MG +G+ +   +  +I  I
Sbjct: 336 MGWVGIMLAMPVAIIIKTI 354


>gi|283833213|ref|ZP_06352954.1| permease, PerM family [Citrobacter youngae ATCC 29220]
 gi|291070846|gb|EFE08955.1| permease, PerM family [Citrobacter youngae ATCC 29220]
          Length = 344

 Score = 62.5 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 49/328 (14%), Positives = 112/328 (34%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    + K         
Sbjct: 7   TLNGLKIVIMLGMLVIILSGIRFAADIIVPFILALFIAVVLNPVVQRMV-KLRIPRVLAV 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +  V ++ L ++ L +L                  N+    +P++ S +   +   E W
Sbjct: 66  SLLIVIIVMLMVLLLAYLGTSL--------------NELARTLPQYRSSLVIPLKNLEPW 111

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +      S+  L +       +  +    ++          SI  +++ + F   +   
Sbjct: 112 LQRAGIGVSVDELVKYIDPNAAMTLVTNLLAQLSNAMS----SIFLLLLTVVFMLLEVPQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +L  +     P       +     +    +  T I+I  GLV         V     
Sbjct: 168 LPGKLQQMMSR--PIEGMAAIQRAIDSVSHYLVLKTAISIVTGLVAWGMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+   +++A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFSGLYDALVVLAGYLVINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|109900570|ref|YP_663825.1| hypothetical protein Patl_4272 [Pseudoalteromonas atlantica T6c]
 gi|109702851|gb|ABG42771.1| protein of unknown function UPF0118 [Pseudoalteromonas atlantica
           T6c]
          Length = 374

 Score = 62.5 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 46/313 (14%), Positives = 92/313 (29%), Gaps = 20/313 (6%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           W++   +L +LYF +    P++   +I     P+ ++              ++   ++  
Sbjct: 18  WLLFLGVLYTLYFTQSLLMPLVVTSLIALLLSPLVAALQGLHIPR-----TVSAFLLVST 72

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            I P  FL        ++    V    QH       +SD   G   S L  K      S 
Sbjct: 73  LIAPFTFLGAELAEPAQKWAKLVPELTQHVTEQLDSISDAMEGENESNLPAKADDEEFSF 132

Query: 134 K------------ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                           E  +                         ++  +I   F    G
Sbjct: 133 FGLFKNKAEQRPVEKDENVMSQRLKQGGLEIMLSVLSSTPLILAQLMTGVILTLFLLIFG 192

Query: 182 FSISQQLDSLGEHLFPAYWKK-ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
             + +        +      + +   + K +    + ++II  G GL      +L G+  
Sbjct: 193 PQLFEAFIQHFPKITDKDQARCLVATIQKELSRYIVTVSIINAGLGLSTAFVLYLIGIED 252

Query: 241 HVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            +  GV+  ++  IP    +          L+  G    A            I  + + P
Sbjct: 253 ALLWGVLAGLLNFIPYVGSLIGATILTLAGLVQFGVQVTALIPPAVYFGLNLIESQFITP 312

Query: 299 FLVGGPIKLPFLP 311
            ++G  ++L  L 
Sbjct: 313 TVLGRNMQLNPLI 325


>gi|88859912|ref|ZP_01134551.1| hypothetical protein PTD2_17910 [Pseudoalteromonas tunicata D2]
 gi|88817906|gb|EAR27722.1| hypothetical protein PTD2_17910 [Pseudoalteromonas tunicata D2]
          Length = 362

 Score = 62.5 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 86/239 (35%), Gaps = 3/239 (1%)

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
           +S   L  Q      R + +    +    +W   ++   ++ +  E  L+      +   
Sbjct: 76  MSLAGLVGQSLNDFSRNIPEYKIKLQQEFVWAVEVAAKYNILLNKEQILELFDPGKVIDM 135

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
           AS           ++  +I+ + F   +   I +++    +   P    +      + + 
Sbjct: 136 ASNMLAGLGGVMANLFLIILTVVFMLFEAPVIGKKVHLALDD--PQMKMRQIDRFLESVN 193

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLI 271
           +     T++++  G+++G   W+  V   V  GV+  +   IP  G+ I+     +  LI
Sbjct: 194 AYLAIKTLVSLATGVLVGLLLWILSVDYFVLWGVLAFMFNYIPNIGSIIAAVPAVLLALI 253

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
                 A  +         ++   + P  +G  + L  L  F  L+     +G +G+ +
Sbjct: 254 LQGPAVAGMVGFGYIAINTVMGNVVEPKYMGRGLGLSTLVVFLSLIFWGWLLGTVGMLL 312


>gi|330504109|ref|YP_004380978.1| hypothetical protein MDS_3195 [Pseudomonas mendocina NK-01]
 gi|328918395|gb|AEB59226.1| hypothetical protein MDS_3195 [Pseudomonas mendocina NK-01]
          Length = 354

 Score = 62.5 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 55/329 (16%), Positives = 116/329 (35%), Gaps = 16/329 (4%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
              +  L G  APVL+ L++ F    + +     K      + ++ T+ +  L +  +L 
Sbjct: 29  FAVVLTLGGMLAPVLTGLVLAFLMQGLVNGLERLKVPQVLAVWLVFTLFLGGLAVF-MLV 87

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L      ++  L +++          PR  ++             +L     +  L ++ 
Sbjct: 88  LMPLLWQQLSTLFNEL----------PRMAAEWQSVFLLLPERYPNLITDAQIVQLIDSM 137

Query: 141 LKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
               G    +   F+     + +   + ++ + I +FFF +D   ISQ   S       A
Sbjct: 138 RGEAGKFGQWALSFSLSSLPVLVSVMIYLVLVPILVFFFLKDREQISQWFRSYLPR-ERA 196

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GG 257
              ++++ + + I +   G  I  I  G+V   A+   G+     L ++  +  ++P  G
Sbjct: 197 LITQVAQEMNQQIANYIRGKFIEIIICGVVTYIAFAYLGLNYAALLALLVGLSVVVPYIG 256

Query: 258 APISFTAVSIYLLIKGNIF-NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           A +    V++  L +         L +   I   +    L P L    + L  +     +
Sbjct: 257 AVVVTVPVALIGLFQWGWSDQFLYLMVVYGIIQALDGNVLVPLLFSEAVNLHPVAIICAV 316

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +      G  G+F    L  L   +    
Sbjct: 317 LLFGGLWGFWGVFFAIPLATLFKAVINAW 345


>gi|109899216|ref|YP_662471.1| hypothetical protein Patl_2909 [Pseudoalteromonas atlantica T6c]
 gi|109701497|gb|ABG41417.1| protein of unknown function UPF0118 [Pseudoalteromonas atlantica
           T6c]
          Length = 372

 Score = 62.5 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 81/212 (38%), Gaps = 4/212 (1%)

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           ++++  +  L           A+           + + +++ + F   +  S  +++   
Sbjct: 114 NIQLNQDQLLSYLDPGAAMNMATSLLTSLGGVLTNFLLILLIVVFMLFEAESFPRKIHIA 173

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
            +   P    +        +++     T++++  GLV+G   +  GV  ++   ++  ++
Sbjct: 174 LDD--PNMKMRQIDKFLLSVKNYLAIKTLVSLATGLVIGLWLYFLGVDHYLLWAMMAFLL 231

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             IP  G+ I+     +  L++     A    L   +   ++   + P  +G  + L  L
Sbjct: 232 NYIPNIGSIIAAIPAVLLALVQLGPGVAGLTALGFVVTNTVMGNIVEPRYMGRGLGLSTL 291

Query: 311 PTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
             F  L+     +G +G+ +  P+ M +   +
Sbjct: 292 VVFLSLIFWGWLLGTVGMLLSVPLTMIVKIAL 323


>gi|297571569|ref|YP_003697343.1| hypothetical protein Arch_1004 [Arcanobacterium haemolyticum DSM
           20595]
 gi|296931916|gb|ADH92724.1| protein of unknown function UPF0118 [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 423

 Score = 62.5 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 67/339 (19%), Positives = 123/339 (36%), Gaps = 22/339 (6%)

Query: 13  RWMIMFIILVSLYFL----KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           R +++ I+L  + +L          V+ AL++     P+ S         S   A IA +
Sbjct: 27  RLIVVTIVLAGIGWLSFQFYTLIISVMVALLLAVILEPLASGLSKHLRFGSGLAAAIALL 86

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +++    V L++    G++     VS  + A    I           G + +E W     
Sbjct: 87  TLLAFLSV-LIWGSSVGIISGVSEVSDQIRAGVSSIVQEVTQRFPNIGAYVNEAWNSLQG 145

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                         T     I       G          + ++  LFFF +DG  +   +
Sbjct: 146 TL------------TTNSGRILGGVVAVGSTVTSLITGFVLVLFTLFFFLKDGRRLWHWM 193

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL--GV 246
             L    +     +       ++ +      I+A+ + + + +   L   P  +A   GV
Sbjct: 194 VRLLPLQYQNSANEAGIRAWVMVGNYTKTQAIVALVDAVGIAAIALLLNTPFSLAFPIGV 253

Query: 247 ITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           I  + A +P        F AV I L+   + F A  + L   +   I    L+P L G  
Sbjct: 254 IVFLAAFVPIVGAFVSGFVAVIIVLVNTQSFFMAAMMMLGILVVQQIEGNLLQPVLQGNA 313

Query: 305 IKLPFLPTFFGLVGGVRTMGLLG-LFIGPVLMALIAVIW 342
           + +  L     + GG    G++G LFI P++ A+ A++ 
Sbjct: 314 LNIHPLAIVLIVAGGSSVAGIVGALFIVPIVAAVNAIVL 352


>gi|227511994|ref|ZP_03942043.1| permease [Lactobacillus buchneri ATCC 11577]
 gi|227084802|gb|EEI20114.1| permease [Lactobacillus buchneri ATCC 11577]
          Length = 320

 Score = 62.5 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 75/221 (33%), Gaps = 8/221 (3%)

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            NG+  I R+ +  G       +++   +I  FFF  +  ++        +  F  +++ 
Sbjct: 100 KNGVSLIWRYITGVGT----MGITLFLSMILSFFFAIEKKTMYNFSHLFLDSDFSWFFQD 155

Query: 203 ---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GA 258
                +               IAI   ++         +P    L ++  I+++IP  G 
Sbjct: 156 LYFFGKKFVATFGVVIEAQFFIAIVNTVLTTIVLAFMHLPQLAVLALMVFILSLIPVAGV 215

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            ISF  +S+     G + +   L +   +   +    L P  +     LP   TF  L+ 
Sbjct: 216 IISFIPLSLVGYSVGGLQDVLYLIITIVVVHALEAYVLNPNFMASKTNLPIFYTFVVLLV 275

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G    G+ GL  G  +   +  I             K  + 
Sbjct: 276 GEHFFGVWGLICGVPVFTFLLDILGVKRHNEPLPPAKPDTK 316


>gi|323699207|ref|ZP_08111119.1| protein of unknown function UPF0118 [Desulfovibrio sp. ND132]
 gi|323459139|gb|EGB15004.1| protein of unknown function UPF0118 [Desulfovibrio desulfuricans
           ND132]
          Length = 377

 Score = 62.5 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 39/309 (12%), Positives = 102/309 (33%), Gaps = 15/309 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           ++  L +L G   P ++AL++ +   P+      +   +     ++  + ++      +L
Sbjct: 26  MVWLLDYLSGVLVPFVAALLVAYLLNPLTCWVERRV-GNRGVAVLLTMLLLLAAVAGVVL 84

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            +    + E   +   +     +     +  + +P  +WA     +    P+   + +  
Sbjct: 85  LVVPMMVKEFAHMGQVLSRLVSNTEFADKVAAHLPPDIWA--WVRETAQSPEVRDLFTAQ 142

Query: 140 FLKTNGIDFIPRFASRFGMIFLDY------CLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                    +         + +           +  +++ + F   D   I         
Sbjct: 143 GALNAARTVLGNVVPGIRGVAVGAINAAAGLFGVFVILLYVIFLLADFGRIKAGWQDYLP 202

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
             +            + +   F G  I+ +  G+++   + L G+P  + +G++  I+ +
Sbjct: 203 ASYREGVVGFLDEFERTMGLYFRGQIIVCLLVGVLMSVGFVLIGLPLGLVMGMLIGILNI 262

Query: 254 IP-----GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIKL 307
            P     G  P+ F A    L    +I+    L +     + ++ D  L P + G  + L
Sbjct: 263 APYLGVAGAVPVLFLAGLNSLEAGESIWLGIGLAVLVMGVVQVIQDAVLVPKIQGESLGL 322

Query: 308 PFLPTFFGL 316
                   L
Sbjct: 323 SPWLILLSL 331


>gi|91224927|ref|ZP_01260186.1| putative permease protein [Vibrio alginolyticus 12G01]
 gi|91190173|gb|EAS76443.1| putative permease protein [Vibrio alginolyticus 12G01]
          Length = 356

 Score = 62.5 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 58/344 (16%), Positives = 121/344 (35%), Gaps = 34/344 (9%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            LYF K    P++ +  I     P  +    K    +       TV +   F+V    + 
Sbjct: 25  GLYFAKPILLPIVLSTFISLLCSPFINYLEDKGLPRA------ITVVLTLSFLVGASIIG 78

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS------LKIL 136
              M E                P  +W S++P  +         ++   +      L I 
Sbjct: 79  LAAMSE----------------PAKQWWSELPSIVKNVSQEVSEVTKASADHLNTPLNIA 122

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           ++  +   G + +                  + ++  ++F    G S+ ++  S      
Sbjct: 123 NDMSMDEVGNNTVFSLVKTLATTTPTILTQAMIVLFMVYFMLNHGRSLFRKSVSYLHGFA 182

Query: 197 PAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++ + + K +      +T++  G GL +G+ +++ G+      G    +M   P
Sbjct: 183 KQRQAIELVKALQKDLSRYIGTITLVNAGLGLSVGAVFFVLGLEDPFLWGAFAGVMNFAP 242

Query: 256 GGAPI---SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
              P+          YL ++   F  T + ++  +   I  + + P L+G    L  L  
Sbjct: 243 YLGPVISMVSFGFVAYLQLESVSFMLTVVSIY-LLLNLIESQFVTPTLLGKRFNLNPLVI 301

Query: 313 FFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKEK 355
           F  LV      G +GL IG P+L+ +  ++ +  +    +N+ K
Sbjct: 302 FVWLVFWGWLWGGMGLLIGVPLLVCINILVDRLELCQSTQNQAK 345


>gi|116628720|ref|YP_813892.1| permease [Lactobacillus gasseri ATCC 33323]
 gi|116094302|gb|ABJ59454.1| Predicted permease [Lactobacillus gasseri ATCC 33323]
          Length = 349

 Score = 62.5 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 51/342 (14%), Positives = 109/342 (31%), Gaps = 19/342 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST-F 61
           E       + R   + +I++ LY  +     +L   I  +    +      K     +  
Sbjct: 6   EKFKKNTNVHRLATLCLIILVLYAARSMMNTILLTFIFTYLIVHLIRFTQKKLPNLPSQV 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           + V+A + V+ +    +       + ++ ++   ++   Q                W ++
Sbjct: 66  IVVLAYLLVIAIIYFAITIYMPILIKQIVKMSHSLMEFYQSD-----------NMDWLTQ 114

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
               ++S  +            +G+  +    +  G + + + +S+I             
Sbjct: 115 YLNHYISDSEITTQ------AKHGVTILVHALTNVGTLTIAFFMSLIMSFFYTIELDSMN 168

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
                 L+S                              IA+    +      +  +P  
Sbjct: 169 EFSHTFLNSRHLSWLFKDIAYFGNKFVNTFGVVLEAQFFIALCNTAMTMICLIIMKMPQI 228

Query: 242 VALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +ALG++  I+++IP  G  IS   +S      G I     +F+   I   I    L P  
Sbjct: 229 IALGLMVFILSLIPVAGVIISLIPLSFVAYSVGGIRYVIYIFIVIMIIHAIEAYILNPKF 288

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +    +LP   TF  L+ G   +G  GL +G  +   +  I 
Sbjct: 289 MSSKTELPIFYTFVVLLAGEHFLGTWGLIVGVPIFTFLLDIL 330


>gi|227509087|ref|ZP_03939136.1| permease [Lactobacillus brevis subsp. gravesensis ATCC 27305]
 gi|227191474|gb|EEI71541.1| permease [Lactobacillus brevis subsp. gravesensis ATCC 27305]
          Length = 320

 Score = 62.5 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 75/221 (33%), Gaps = 8/221 (3%)

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            NG+  I R+ +  G       +++   +I  FFF  +  ++        +  F  +++ 
Sbjct: 100 KNGVSLIWRYITGVGT----MGITLFLSMILSFFFAIEKKTMYNFSHLFLDSDFSWFFQD 155

Query: 203 ---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GA 258
                +               IAI   ++         +P    L ++  I+++IP  G 
Sbjct: 156 LYFFGKKFVATFGVVIEAQFFIAIVNTVLTTIVLAFMHLPQLAVLALMVFILSLIPVAGV 215

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            ISF  +S+     G + +   L +   +   +    L P  +     LP   TF  L+ 
Sbjct: 216 IISFIPLSLVGYSVGGLQDVLYLIITIVVVHALEAYVLNPNFMASKTNLPIFYTFVVLLV 275

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G    G+ GL  G  +   +  I             K  + 
Sbjct: 276 GEHFFGVWGLICGVPVFTFLLDILGVKRHNEPLPPAKPDTK 316


>gi|325970710|ref|YP_004246901.1| hypothetical protein SpiBuddy_0880 [Spirochaeta sp. Buddy]
 gi|324025948|gb|ADY12707.1| protein of unknown function UPF0118 [Spirochaeta sp. Buddy]
          Length = 410

 Score = 62.5 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 52/331 (15%), Positives = 108/331 (32%), Gaps = 19/331 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            + +  IL  L   K    P++ +        P+      K      F        ++ +
Sbjct: 18  ILAVLAILAVLKVSKDVTIPLVLSFFCFLLFSPLLRRL-DKLHIPKIFSVTFVMALLLFI 76

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           F++      ++ ++ +  LV  +    +  + + R +S          L T  LS     
Sbjct: 77  FVL----AGWFVIMTVDTLVRLIPFYAEKVVSLDRLISSRVSTFVDLPLGTSFLS----- 127

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                  L  N         +     FLD       + I   F   +  S+  +L +   
Sbjct: 128 ------LLPVNWSSLAISSLTSISNKFLDITKVATLVYIFFLFLLLERQSVIPKLLAAIP 181

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                    +   + + I    L   +I+   GL    A  + G+   +  GV+  +   
Sbjct: 182 KSKGMKIAVMFERITRQISKYLLLKAVISAFTGLFFFLAAIVTGLDLPILWGVLAFVFNF 241

Query: 254 IPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           IP    +  T ++I++ +     +  N   + +       I+   + P L GG + L   
Sbjct: 242 IPSVGSVIVTTLTIFMALIQFAPDWTNVMYVGILTISTQMILGNIIDPRLQGGQLNLSPF 301

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                L       G+ G+FI   L +++ ++
Sbjct: 302 VILVSLSLWGFIWGIPGMFISVPLTSVLQIL 332


>gi|271968022|ref|YP_003342218.1| permease-like protein [Streptosporangium roseum DSM 43021]
 gi|270511197|gb|ACZ89475.1| permease-like protein [Streptosporangium roseum DSM 43021]
          Length = 432

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 59/334 (17%), Positives = 111/334 (33%), Gaps = 29/334 (8%)

Query: 2   RETMLNPQGIMRW----MIMFIILVSLYFLKGFFAPVLSALII--------GFTSWPIYS 49
           R T L P+ ++R     + + II  ++++   F   +L  +I+            +P+  
Sbjct: 7   RLTQLVPRTLLRLAAWSLCLIIIGWAVFYFAQFI-AMLRIVILPVAVALLLTALLFPVTR 65

Query: 50  SFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW 109
                      +   +  +  + +      F+      E   LV +V   ++    V  W
Sbjct: 66  RL-RAMGMRPIYATWVTLLIALAVLGGIGWFIGVRANDEFPGLVDQVRATSKT---VEDW 121

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
           L   P  +  S+L         S  I       T   + I +       + L+   SI+ 
Sbjct: 122 LYTGPLHLQPSQL---------SKWIDEIAVQVTTQRNQITQTVLTGATVALEVLASIVL 172

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
           ++   FF  +DG  I            P    +  R     +     G   +A   G+++
Sbjct: 173 LLFVTFFLLKDGDRIWAWFLRAFGGTAP-RVDRAGRAAWVTLSHYVQGTVAVAGVHGVIM 231

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
           G      GVP    L V+  + + IP  G   +    ++  L       A        +E
Sbjct: 232 GIVLAGMGVPLWAPLAVLIFLASFIPIVGIFFAGAVATLVTLGAKGPIYALIFLGILVVE 291

Query: 289 LFIVDKTLRPFLVGGPIKLPFL-PTFFGLVGGVR 321
             + +  L+P +VG  +    L       VGG+ 
Sbjct: 292 QQLENHVLQPLIVGRALSFHPLAIILVLAVGGIL 325


>gi|317968134|ref|ZP_07969524.1| hypothetical protein SCB02_01226 [Synechococcus sp. CB0205]
          Length = 357

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 106/297 (35%), Gaps = 15/297 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  F A  + A +I F    + + +++++        ++     + L ++  L+L    +
Sbjct: 34  LAPFPALFVGAALIAFLLD-LPTRWLARRGLPRGLAVLLVVGLSLTLLVLAALWLVPRLI 92

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++ EL++ +          P WL +  G +   E+W      P     LS T       
Sbjct: 93  EQLGELINSL----------PSWLVEAEGVLDRLEVWAADRGLPTEFTDLSSTLFARASQ 142

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR- 205
             +    S+  +  L   + +   ++ +             + +      P   + +   
Sbjct: 143 --LASQLSQRALGILGATVGLTVNVVIVAVLALFLLLGGDPIVAGLARWLPEGTRTLVTG 200

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + +  R  F G  ++A+    +    + L G+P  V   V      ++P  + ++   V
Sbjct: 201 TLNRTFRGYFAGQVLLALILSALQIVVFTLLGIPYGVLFAVAIGFTTLVPYASALTIVLV 260

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
           S+ L +  +      + +       +VD+ ++P L+G  + L        L  G R 
Sbjct: 261 SVLLALD-DPRTGIEVLVAAISVGQVVDQVIQPRLMGSIVGLQPAWLLVSLPVGARV 316


>gi|212212870|ref|YP_002303806.1| riboflavin transporter [Coxiella burnetii CbuG_Q212]
 gi|212011280|gb|ACJ18661.1| riboflavin transporter [Coxiella burnetii CbuG_Q212]
          Length = 363

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 59/342 (17%), Positives = 120/342 (35%), Gaps = 34/342 (9%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F   +  PV+ ++++ +            +     + AV             +++LF+ G
Sbjct: 41  FFGKYLLPVVISVVLAYLFASPVRWLERWRFPH--WAAVT------------IVYLFFLG 86

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +  +       ++  Q    +   + + P  +   + W     H       ++     N 
Sbjct: 87  IFLLALFGLLPLMWKQ----LASMVHEFPKAITKGQAWMTEYMHRYPKLFPTDPI--ANL 140

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMII-----------ALFFFYRDGFSISQQLDSLGEH 194
             ++ + ++R G   L + L+ I  II            +FFF +DG SIS  L      
Sbjct: 141 AGYLHQQSARIGQFILSFSLASIPGIIEAILYLVLVPLLVFFFLKDGGSISNWLSRFLPE 200

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 + +   + + I +   G  I  I   +V   A+ L  +     LGV+  +  ++
Sbjct: 201 RQGL-IRIVWHEMNQKIGAYVRGRVIEIIIVSIVAVIAFALLRLQYAFLLGVLLGLSVIV 259

Query: 255 P-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P  GA +    ++I  L++ G   +   L +  AI + +    L P L    + L  +  
Sbjct: 260 PYIGAIVVTIPIAIVGLMQWGLSAHFAYLMIVYAIIITLDGNLLVPLLFSEAMDLHPIVI 319

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
              ++      G  G+F    L  L+  +      A     E
Sbjct: 320 ILSVLVFGGIWGFWGIFFAIPLATLVKTVLNAWPKARISQNE 361


>gi|254360569|ref|ZP_04976718.1| possible membrane protein [Mannheimia haemolytica PHL213]
 gi|153091109|gb|EDN73114.1| possible membrane protein [Mannheimia haemolytica PHL213]
          Length = 350

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/313 (14%), Positives = 108/313 (34%), Gaps = 18/313 (5%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L +L I     P+      +K     +LA+   + V  L    L  +    + E  
Sbjct: 28  VVPFLLSLFIAIICSPMIKFMTKRKV--PLWLAITILLIVFILGFSFLAGIINNTLQEFT 85

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
             + +  +     I V   L+              H+    S + +   F  ++ ++ + 
Sbjct: 86  NAIPQYKIQLSSRIQVILELAH-----------RWHIPLTLSQEEIMSKFDPSSIMNLVS 134

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
           +          +  +  + +I  L       + ++    +L      +  K+    V + 
Sbjct: 135 KLLMGLSGALSNIFVIFLVVIFMLLEMPVAKYKLA---LALSPDDDLSNEKEYINQVLEG 191

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
           +       T +++  G ++     + GV   +   ++T ++  +P  G+ ++   + I  
Sbjct: 192 VIGYLGVKTFVSLLTGGLVWILLEILGVEYAILWAILTFLLNYVPNIGSILAGIPIVIQA 251

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           L+           +   +   +V   L P L+G  + L  L  F  L+     +G +G+ 
Sbjct: 252 LVLNGFSIGLGTLIGIVVINMVVGNALEPKLMGKKLGLSTLVVFLSLLFWGWLLGTVGML 311

Query: 330 IG-PVLMALIAVI 341
           +  P+ MA    +
Sbjct: 312 LSVPLTMACKVAL 324


>gi|329935750|ref|ZP_08285555.1| integral membrane protein [Streptomyces griseoaurantiacus M045]
 gi|329304841|gb|EGG48714.1| integral membrane protein [Streptomyces griseoaurantiacus M045]
          Length = 341

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 95/281 (33%), Gaps = 19/281 (6%)

Query: 48  YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
           +   +       +  A +  V+V+ +    L  +    +    ++V  V  A Q      
Sbjct: 56  HRRLVG-VGVHRSLSAFVTCVAVVAVVGGALFIVVSALVDNGAQIVDSVRRAAQS----- 109

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
                       ++      +   SL   +       G   +    +  G I  +   + 
Sbjct: 110 -----------LTDRLGSSGTSVDSLSEEARKLAGRFGGSAVSGVVTGVGYIS-ETVATA 157

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           +  ++ +FFF RDG      L  L  +      + ++R   + +     G T IA+ +  
Sbjct: 158 VLALLLVFFFLRDGDRAVSGLRGLSPYGSADTVEAVARRAFRAVEGFMRGTTFIALIDAA 217

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
           ++ +      VP  V LG +  + A IP        AV++ +      F      L   +
Sbjct: 218 LITAGLLGLRVPGAVGLGALVFVGAYIPYLGAFLSGAVAVLVAFADRGFAVAVWALGLIV 277

Query: 288 ELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            + +++   L+P +    +++        L  G    G+LG
Sbjct: 278 AVQLIEGHVLQPVIQSRTVRMHPAVVLVALAAGASVAGILG 318


>gi|255101166|ref|ZP_05330143.1| hypothetical protein CdifQCD-6_10184 [Clostridium difficile
           QCD-63q42]
          Length = 363

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/356 (14%), Positives = 119/356 (33%), Gaps = 11/356 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSS----FISKKEES 58
                 + ++ +  + +IL  L  L  +   VL   +  F    + +        K    
Sbjct: 8   SYQNKQRFLINFCYLVVILGLLMLLGKYAFSVLLPFVFAFLIASLLNKPVLYISEKLLIK 67

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWL---SDIP 114
              +A I+      +  + +  +  Y +  +KE+   +  +  +  IP+   +    ++ 
Sbjct: 68  RGIVATISVFLFFLIAGIIVSVIGTYLIYGIKEIFHFLPTMFEELVIPLTETVIKEVELF 127

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
            G +         ++   L      F+ +   + +         + L + +  I  I+A 
Sbjct: 128 SGSFNFSFIELIEANMPVLMNEMSVFIVSLSNNIVSGITDIVSSVPLLF-MKTIITIVAS 186

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
            F   D  +I + +             +        I        +I       L   + 
Sbjct: 187 IFIAIDYPTIKRFIVLQIPKNKSYLLAEAKAFTIDTIIKCGFSYLLIFAITFSELYVGFA 246

Query: 235 LAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
           +  +     + +  A++ ++P  G         I  L  G+   A  + L   +   I  
Sbjct: 247 IINISYAGIIALFIALLDILPVLGTGSILIPWGIISLFLGDYSMALGIALLYIVITIIR- 305

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
             + P LVG  ++L  +     ++ G+   G +GLF   +L+A +  +  + I+ I
Sbjct: 306 NIIEPKLVGKHMELHPVLALASMLTGLHFFGFIGLFGILLLIAFLKKLNDKEIIHI 361


>gi|330808075|ref|YP_004352537.1| putative permease protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376183|gb|AEA67533.1| putative permease protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 356

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/344 (12%), Positives = 111/344 (32%), Gaps = 18/344 (5%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS---TFLA 63
           + + ++  +++F+   ++  L G  APVL+ +++ +    + ++    +   +     + 
Sbjct: 15  DEEAVVLAVLLFLAFTAVLTLGGMLAPVLAGMVLAYLMQGLVTTLERLRLPGAVAVGLVF 74

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +    ++   IV +  L++  +    EL   +       + +P     +       +  
Sbjct: 75  ALFMGLLLVFIIVIVPLLWHQLVTLFNELPGMLAKWQSVLLLLPERYPHLVSDEQVLQAI 134

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                                   +   F+     + ++  + ++ + I +FFF +D   
Sbjct: 135 EVVRGQIGKF------------GQWALTFSLSSLPLLVNIMIYLVLVPILVFFFLKDREM 182

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           I + +         A   ++++ + + I +   G  I     G V    +   G+     
Sbjct: 183 IGRWVRGYLPR-ERALITRVAQEMNRQIANYIRGKVIEIFICGGVTYIGFVALGLNYAAL 241

Query: 244 LGVITAI--MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           L ++  I  +    G   ++     I L   G       L     I   +    L P L 
Sbjct: 242 LALLVGISVVVPYVGTVVVTVPVALIALFQWGWSDQFIYLMAVYGIIQTLDGNVLVPLLF 301

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
              + L  +     ++      G  G+F    L  L   +    
Sbjct: 302 SEAVNLHPVAIICAVLLFGGLWGFWGVFFAIPLATLFKAVLDAW 345


>gi|288935653|ref|YP_003439712.1| hypothetical protein Kvar_2794 [Klebsiella variicola At-22]
 gi|290509681|ref|ZP_06549052.1| transporter tqsA [Klebsiella sp. 1_1_55]
 gi|288890362|gb|ADC58680.1| protein of unknown function UPF0118 [Klebsiella variicola At-22]
 gi|289779075|gb|EFD87072.1| transporter tqsA [Klebsiella sp. 1_1_55]
          Length = 344

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/328 (14%), Positives = 106/328 (32%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL +     P+    +  +        
Sbjct: 7   TLNGLKMVIMLGMLVIILTGIRFAADIIVPFILALFLAVIINPLVQLLVRCRVPR-VLAI 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +    ++ L IV L  L        + L        +    +  WL  +          
Sbjct: 66  SMLIGLIVMLAIVLLASLGTSLNELARTLPQYRNYLYEPMQTIAPWLQRM---------- 115

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                      +      K    + +    +       +   SI  +++ + F   +   
Sbjct: 116 --------GFTVSVVELNKYIDPNAVMTLVTSLLTQLSNAMSSIFLLLLTVVFMLLEVPQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +L  L     P       +     +    +  T I++  GLV+     L  V     
Sbjct: 168 LPAKLQQLMSR--PVEGMGAIQRAIDSVSHYLVLKTAISLVTGLVVWGMLVLLDVRFAFM 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++     + +L+ G ++ A  +     I   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPILQVLVFGGLYEALVVLAGYLIVNLVFGNILEPRVMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|108763169|ref|YP_628600.1| hypothetical protein MXAN_0325 [Myxococcus xanthus DK 1622]
 gi|108467049|gb|ABF92234.1| putative membrane protein [Myxococcus xanthus DK 1622]
          Length = 386

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 90/290 (31%), Gaps = 14/290 (4%)

Query: 37  ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV 96
           A I+        +     +      +A++ T  ++ +  +  L +      ++  LV + 
Sbjct: 71  ATILALALEHGVARLERGRLPRLAAIALVMTALLVVVAAL-ALLVIPAAADQLDALVRQW 129

Query: 97  VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
                     P+ + ++        L  +  +   + +   E          +P    R 
Sbjct: 130 ----------PQLMEELRSSRPIQVLSDRLQALGWARR--LEEATPRLATGALPTLLIRA 177

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
               +   +S + +   + F    G  + ++  +L        + ++   V         
Sbjct: 178 IGGVVGVVISALTVFFLVVFMLTFGGDLIRRGLALVGPEHRMRYVRVLHNVYSATGGYLS 237

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNI 275
           G+ +I      +      L G+P  + LG+ +   +++P   P+    V   L      I
Sbjct: 238 GLALICTINATLTTVTLALLGLPYFLPLGIASGFSSLVPYVGPLIAGGVITLLTWATQGI 297

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           + A     +  +   +    L P +    + +  L     ++      G+
Sbjct: 298 WAAAVALAYFLLYGPLEGNVLAPLVFRRTVHVNPLLVLLAVLFCAELAGI 347


>gi|227872610|ref|ZP_03990945.1| sporulation integral membrane protein YtvI [Oribacterium sinus
           F0268]
 gi|227841550|gb|EEJ51845.1| sporulation integral membrane protein YtvI [Oribacterium sinus
           F0268]
          Length = 360

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/308 (16%), Positives = 108/308 (35%), Gaps = 4/308 (1%)

Query: 37  ALIIGFTSWPIYSSFISKKE-ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSK 95
             II F   P+ S             ++++ T+++  LF      L   G+  +K+ +S+
Sbjct: 24  GAIIAFCLNPLISFLQKSFPFLKKKQISLVLTLTIFALFFYLCFCLMQLGLPMLKQRISR 83

Query: 96  VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASR 155
           + L  Q        + +     +        LS            +         +F+ +
Sbjct: 84  LPLEIQDLKRQLEKMIEE-NLPYFPPFIQNLLSDLPGTLDSLGRTMMNKWTSPALQFSLQ 142

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
                 +  L +I  I++   F ++G  +   L       F  Y + +     K+++   
Sbjct: 143 VVSGLPELFLYLIITILSALCFSQEGAKLLSILHRNIPEQFRKYMQLLKEDGKKILKGYV 202

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGN 274
                I     ++L   + L  V   + L  +TA +  +P  G           +L+KG 
Sbjct: 203 WAQIQIMFCVFILLSVGFSLLRVELAIPLAFLTAFLDALPVFGVGFIMWPWMALILLKGK 262

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
                 L L   +   ++ + L+P ++G  + LP L     L  G +  G+ G+ +   +
Sbjct: 263 FLFFLALLLIYILSQ-MIRQILQPKIIGDAVGLPPLLALIFLFLGYKLYGISGMVLALPV 321

Query: 335 MALIAVIW 342
             L+   +
Sbjct: 322 GMLLVRFY 329


>gi|152970116|ref|YP_001335225.1| putative transport protein [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238894583|ref|YP_002919317.1| putative transport protein [Klebsiella pneumoniae NTUH-K2044]
 gi|330014336|ref|ZP_08307893.1| autoinducer 2 exporter TqsA [Klebsiella sp. MS 92-3]
 gi|150954965|gb|ABR76995.1| putative integral membrane transport protein [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238546899|dbj|BAH63250.1| putative integral membrane transport protein [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|328533203|gb|EGF59969.1| autoinducer 2 exporter TqsA [Klebsiella sp. MS 92-3]
          Length = 344

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/328 (14%), Positives = 106/328 (32%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL +     P+    +  +        
Sbjct: 7   TLNGLKMVIMLGMLVIILTGIRFAADIIVPFILALFLAVIINPLVQLLVRCRVPR-VLAI 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +    ++ L IV L  L        + L        +    +  WL  +          
Sbjct: 66  SLLIGLIVMLAIVLLASLGTSLNELARTLPQYRNYLYEPMQTIAPWLQRM---------- 115

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                      +      K    + +    +       +   SI  +++ + F   +   
Sbjct: 116 --------GFTVSVVELNKYIDPNAVMTLVTSLLTQLSNAMSSIFLLLLTVVFMLLEVPQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +L  L     P       +     +    +  T I++  GLV+     L  V     
Sbjct: 168 LPAKLQQLMSR--PVEGMGAIQRAIDSVSHYLVLKTAISLITGLVVWGMLVLLDVRFAFM 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++     + +L+ G ++ A  +     I   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPILQVLVFGGLYEALVVLAGYLIVNLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|295424993|ref|ZP_06817702.1| integral membrane protein [Lactobacillus amylolyticus DSM 11664]
 gi|295065311|gb|EFG56210.1| integral membrane protein [Lactobacillus amylolyticus DSM 11664]
          Length = 345

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/336 (14%), Positives = 108/336 (32%), Gaps = 27/336 (8%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST-FLAVIATVSVM 71
           R ++  +I+  LY ++     +L   I  +    +         +  T  + V+  + ++
Sbjct: 16  RVVVFLLIVACLYEMRAMMNTILLTFIFTYVIVHLIRLVQRYIPKMPTGIIVVVMYLIIL 75

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L    +       ++++ ++V  V+   +               +      T+++S  +
Sbjct: 76  ALLYFIITVYLPMLVVQISKMVKSVMAFYESD-----------ESLRLMSYVTRYISKGE 124

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ---- 187
            ++                 FA           ++    +I  FF+  +   + +     
Sbjct: 125 LIEQAKHAM----------TFAFHTATNIGTLTIATFMSLILSFFYTIELKKMREFSSLF 174

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + S              +               IAI    +      +  +P  VALG++
Sbjct: 175 VKSGYLKWLFEDICYFGKKFTNTFGVVLEAQFFIAICNTALTMIGLAIMRMPQIVALGLM 234

Query: 248 TAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             I++++P  G  IS   +SI     G I     +F+   I   +    L P  +    +
Sbjct: 235 VFILSLVPVAGVIISLIPLSIVGYSVGGIRYVIYIFIMIMIIHAVEAYVLNPKFMASKTE 294

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           LP   TF  L+      G  GL +G  +      + 
Sbjct: 295 LPIFYTFLVLLVAEHFWGTWGLIVGVPIFTFFLDVL 330


>gi|315636913|ref|ZP_07892137.1| permease [Arcobacter butzleri JV22]
 gi|315478743|gb|EFU69452.1| permease [Arcobacter butzleri JV22]
          Length = 345

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/336 (15%), Positives = 118/336 (35%), Gaps = 25/336 (7%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS---TFLAVIATVSVM 71
           + MF+++ S   L     P+  A  I F    + +               +A+  ++ ++
Sbjct: 2   LFMFLVIYSFNSLSSILTPIAIAFFIWFLINALANEIKKIPFIKQKILNIIAIPLSLFII 61

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
             F++ +       M+E+  ++S++       I     ++ I       + + +      
Sbjct: 62  IYFMIKVGAFITSSMIELSSIISQLDSKINIVIEKISIMTSIDLKDPLEKFFQE------ 115

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                   F  ++ ++ I    S      +   L ++F++I   FF +    +       
Sbjct: 116 --------FNLSSALNKIFTAFSSIFSNLVQIFLYVLFLLIDQQFFNQKLNVL------F 161

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
            +       + I   V K +R+  L  TI+++  G +         +   +  G I  I+
Sbjct: 162 SKEENRQKAEHILTSVSKGVRTYILITTIVSLVTGFLTFIICQYFSLQGAILWGFIAFIL 221

Query: 252 AMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
             IP    I          L+   +  +   LF    I  F+V   + P L+G  + +  
Sbjct: 222 NFIPTIGSIIAVLIPTIFALIQFTDYSDIVGLFTALVIIQFVVGNIIYPKLMGNKLNISQ 281

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
                 LV      G +G+F+   +M ++ +I  + 
Sbjct: 282 FVVILSLVIWGAMWGTIGMFLAVPMMMILLIILSQF 317


>gi|302750837|gb|ADL65014.1| putative permease [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|323440834|gb|EGA98542.1| hypothetical protein SAO11_0265 [Staphylococcus aureus O11]
 gi|323443877|gb|EGB01489.1| hypothetical protein SAO46_0300 [Staphylococcus aureus O46]
          Length = 338

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/330 (13%), Positives = 114/330 (34%), Gaps = 13/330 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P L +  + +   P + + + K             +++  +  + + F+    +  + 
Sbjct: 18  FLPFLISGFLFYICLP-FQNLLEKVGFPRWASITTIMLALFAIIGLIVAFVAPIIISNIN 76

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L+S+     +    + ++   +       E  T  +++         T + +N + +I 
Sbjct: 77  NLISQTPALQKEAEQIIKF--ALAQMDKLPEDVTSRITNMVKSMGDGVTNILSNSLQYIT 134

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              S            +I +   L +  +D       +    +     ++  +   +   
Sbjct: 135 SLISTI--------FLLIMVPFFLIYMLKDHEKFIPAVAKFFKGERKVFFVDLLTDLNFT 186

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYL 269
           ++S   G   +++  G+ L   Y +  +P    L +   +  +IP  G+ +SF   +I L
Sbjct: 187 LKSYIQGQVTVSVILGIFLYIGYSIIDLPYIPLLVLFAGVANLIPFLGSWLSFAPAAI-L 245

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            I  +      + +   I   +    + P ++G  + +  L     ++      G   + 
Sbjct: 246 GIIDSPTTFIWVCIITLIAHQLEGNIITPNVMGKSLSIHPLTIIVVILAAGDLGGFTLVL 305

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISSN 359
           I   L A++  +        +   +K +SN
Sbjct: 306 IAVPLYAVLKTVVSNIFKYRQRIIDKANSN 335


>gi|330940342|gb|EGH43449.1| lipoprotein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 78

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 22 VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
            L+ +  F++ ++   ++ F SWP+        +   +  A++  +  M L   PL++L
Sbjct: 19 ACLWVMAPFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAALVMCLCWMLLVAAPLVWL 78


>gi|169350364|ref|ZP_02867302.1| hypothetical protein CLOSPI_01131 [Clostridium spiroforme DSM 1552]
 gi|169293147|gb|EDS75280.1| hypothetical protein CLOSPI_01131 [Clostridium spiroforme DSM 1552]
          Length = 361

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 56/322 (17%), Positives = 124/322 (38%), Gaps = 22/322 (6%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P +    I F   P + +FI K  +      ++  ++V  + I+ +L +       + E+
Sbjct: 55  PFIVGFTIAFVLNP-FINFIDKYLKKRAVSVILTYLAVFTILILIILLVIPLIYESIFEM 113

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
                            L +I   +  +  +          K + + F     +D     
Sbjct: 114 YPTFNAG----------LKEIGRFIQNNFNYDISSLTSYIEKSVYQFFNDPTVLDATIDV 163

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL---FPAYWKKISRIVPK 209
            ++  +   ++ + +I  I     F     SI Q + ++   +    P Y K+I   + +
Sbjct: 164 LNQVLVNLTNFIIYVILAIYMSNIF----NSIRQTIKNIAIKIDCNLPIYLKEIDLSLVQ 219

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            +++ F+G    AI + +     Y L G P+ + LGV++ + ++IP   PI    + +  
Sbjct: 220 YVKAFFIG----AIAQAITTMIMYVLIGHPNWLILGVVSGVSSIIPYVGPIIANCLGLIT 275

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            +         L +   I+  ++   + P +    I L  L   FG++ G    G++G+ 
Sbjct: 276 SLGMQSSTIIFLCILIFIQSIVMSYIITPRIYSSRIDLSILWVLFGILSGSSLFGIVGMI 335

Query: 330 IGPVLMALIAVIWKESIMAIKE 351
           I   L+  I +I++      ++
Sbjct: 336 IAMPLLVSIKIIYQVYKEHHQD 357


>gi|325066380|ref|ZP_08125053.1| putative permease [Actinomyces oris K20]
          Length = 443

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/345 (13%), Positives = 113/345 (32%), Gaps = 35/345 (10%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + I  V LY ++  FAP   AL +  T  P+ S     +                   + 
Sbjct: 34  LTIGAVGLYLIQDLFAPAFFALTLVVTVRPLVSWMTRHRVPR---------------VVA 78

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
               +       +    +  V   Q    +P++            +W +  +    + + 
Sbjct: 79  ATAAIVLIFAFVVLLFAALAVAVAQLVDTLPQY------APKFQAIWKQVETQLNGMGVD 132

Query: 137 SETFLKT-----NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
               LK      +    +       G +     +  +  ++ +F  +    +   ++ + 
Sbjct: 133 QSAVLKQVTNVLDTSQLVMVAQPVLGQLTSASAMMGVMSMVVVFLMF---DTAKIEIRTA 189

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              +             + +RS ++  T+  +   ++     W   VP  +  GV++ I 
Sbjct: 190 ALGVLKPGMASALVSFCEAVRSYWMVSTVFGLIVAVINAVTLWYLNVPMAITWGVVSFIT 249

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             IP  G  +     +I  L+    + A  + L      F++   ++P   G  + L   
Sbjct: 250 NYIPNIGFVLGVVPPAILGLVDSGPWTALWVVLSYTAANFVIQSLIQPKFTGDAVGLNTT 309

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            TF  L+      G LG      ++A+   ++ ++++   + + +
Sbjct: 310 TTFLCLLFWSTVTGALG-----TILAVPLTLFVKALLIDSDPRSR 349


>gi|322833666|ref|YP_004213693.1| hypothetical protein Rahaq_2972 [Rahnella sp. Y9602]
 gi|321168867|gb|ADW74566.1| protein of unknown function UPF0118 [Rahnella sp. Y9602]
          Length = 347

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/354 (14%), Positives = 121/354 (34%), Gaps = 25/354 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           MR+T++  QG+   ++M +++V    +K       P + AL + F   P+       +  
Sbjct: 1   MRKTIVTTQGLKIVVMMAMLVVIFAGIKSAADIIVPFILALFLAFVLNPLIVLLEKWRVP 60

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
            +    ++    V+C+ +     L        + L     L       +  W        
Sbjct: 61  RA-LAVLLVATLVICMMVFLTTKLLVTLNEFARTLPQYRGLIVDKLSDIEAWFPQ----- 114

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                 ++    P+ L    +     N +  +  + S          +++ FM++ +   
Sbjct: 115 ------SELTLSPEQLASYIDPAATLNMVSKLISYLSNAMAGLFLLLMTVAFMLLEV--- 165

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
                 +  +++ + E         I R +  V R   +   +I++  GL + +   +  
Sbjct: 166 ----PQLPYKVEQMSED-PGKGMANIQRALDSVTRYLVIKT-LISVVTGLAVWALLAVTS 219

Query: 238 VPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           +      G++   +  IP  G+ I+     I   +         L     +   I    +
Sbjct: 220 IRFAFLWGMLAFALNYIPNIGSFIAAIPPIIQAFLFNGFSEGLILAGGYILINLIFGSII 279

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            P ++G  + L  L  F  L+     MG +G+ +   L  ++ +  + +    K
Sbjct: 280 DPKILGRGLGLSTLVVFMSLIFWGWLMGPVGMLLSVPLTIVLKIALEPTAAGHK 333


>gi|145636393|ref|ZP_01792062.1| hypothetical protein CGSHiHH_07946 [Haemophilus influenzae PittHH]
 gi|145270558|gb|EDK10492.1| hypothetical protein CGSHiHH_07946 [Haemophilus influenzae PittHH]
          Length = 348

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 54/346 (15%), Positives = 122/346 (35%), Gaps = 23/346 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+  +   + ++    + IIL  +        P L +L I     PI  +   ++     
Sbjct: 1   MQNNLNLHRTLLGIAAVIIILAGVKLAAEIVVPFLLSLFIAIICSPIIKAMTQRRVPH-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +LA+     ++ L    L+ L      E               IP  + L          
Sbjct: 59  WLAITLLFVLISLVFFFLVGLINSTAREF-----------TQSIPQYKVLLSQRVSDLTG 107

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L   +L    S + + E F  +  ++F+ R    F  +  +  + ++ +I    F   +
Sbjct: 108 LLQRFNLPFTLSRETIQENFDPSIIMNFVSRVLLNFSGVVSNVFVLVLVVI----FMLAE 163

Query: 181 GFSISQQLDSLG---EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             ++  +   +     +      + I R++  VI    +     ++  G+ +       G
Sbjct: 164 APTMKHKFAMVISSTPYDAAKEERHIDRVLQGVIGYLGIKSI-TSLLTGVGVFILLEACG 222

Query: 238 VPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           V   +    ++ ++  IP  G+ I+   + +  L+         + +       +V   +
Sbjct: 223 VQYAILWATLSFLLNYIPNIGSIIAAIPIIVQALLLNGFGIGFGVAIGVIAINMVVGNII 282

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            P ++G  + L  L  F  L+     +G +G+ +  P+ MAL   +
Sbjct: 283 EPKMMGQRLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMALKIAL 328


>gi|224499485|ref|ZP_03667834.1| hypothetical protein LmonF1_07202 [Listeria monocytogenes Finland
           1988]
          Length = 347

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 111/337 (32%), Gaps = 25/337 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  ++ V LY L+     +L   I  F    + +  + +       +
Sbjct: 5   EKLKENDTARRVLVFVLLGVVLYLLRSMIDLILLTFIFAFLVTRLENVILKRVRVPRKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V     V ++      + ++ +LV  +V    +  P    +     G      
Sbjct: 65  VIVLYSLVAVFLYVAIVHFLPILINQISQLVDSLVKLYNN--PSDNTIVKWIVGFLKESN 122

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             K+L                 G+DFI    S  G + L + L++I  +    FF  +  
Sbjct: 123 IQKYLQ---------------AGVDFIIASLSGIGSVGLSFFLALILSL----FFSLEKE 163

Query: 183 SISQQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            ++              +K+     +              +IA+    +   A +L   P
Sbjct: 164 RVTSFTGQFMTSKVGFIFKEAAFFGKKFVSTFGVVLEAQLMIALVNTFITTIALYLMDFP 223

Query: 240 SHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             ++L ++  ++ +IP    I     + +     G   +   + +   I   I    L P
Sbjct: 224 QLLSLSIMVFVLGLIPVAGVIISCIPLVLIAYSVGGFQDVVYILITVVIVHAIETYILNP 283

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
            L+     LP   TF  L+      G+ GL +G  + 
Sbjct: 284 KLMSSKTNLPVFYTFIILIFSETFFGVWGLIVGIPVF 320


>gi|146306691|ref|YP_001187156.1| hypothetical protein Pmen_1660 [Pseudomonas mendocina ymp]
 gi|145574892|gb|ABP84424.1| protein of unknown function UPF0118 [Pseudomonas mendocina ymp]
          Length = 356

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/339 (15%), Positives = 107/339 (31%), Gaps = 18/339 (5%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE---SSTFLAVIATVSVMCLFIVP 77
              +  L G  APVL+ L++ F    + +     K     +   +  +    +    +V 
Sbjct: 29  FAVVLTLGGMLAPVLTGLVLAFLMQGLVNGLERLKVPQILAVWLVFALFLGGLTMFMLVL 88

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +  L++       EL           + +P     +       +L               
Sbjct: 89  VPLLWHQLSTLFNELPRMAAEWQAVFLLLPERYPSLITDEQVVQLIDSMRGEAGKF---- 144

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
                     +   F+     + +   + ++ + I +FFF +D   I Q           
Sbjct: 145 --------GQWALSFSLSSLPMLVSIMIYLVLVPILVFFFLKDREQIGQWFRGYLPR-ER 195

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-G 256
           A   ++++ + + I +   G  I  I  G+V   A+   G+     L ++  +  ++P  
Sbjct: 196 ALITQVAQEMNQQIANYIRGKFIEIIICGVVTYIAFAFLGLNYAALLALLVGLSVVVPYI 255

Query: 257 GAPISFTAVSIYLLIKGNIF-NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
           GA +    V++  L +         L +   I   +    L P L    + L  +     
Sbjct: 256 GAVVVTVPVALIGLFQWGWSDQFLYLMVIYGIIQALDGNVLVPLLFSEAVNLHPVAIICA 315

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           ++      G  G+F    L  L   +      A  E  E
Sbjct: 316 VLLFGGLWGFWGVFFAIPLATLFKAVLNAWPRAEPEAIE 354


>gi|212638587|ref|YP_002315107.1| putative permease [Anoxybacillus flavithermus WK1]
 gi|212560067|gb|ACJ33122.1| Predicted permease [Anoxybacillus flavithermus WK1]
          Length = 354

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/317 (15%), Positives = 100/317 (31%), Gaps = 29/317 (9%)

Query: 17  MFIILVSLYFL-------KGFF-------APVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  ILV LYF+         F         P L A  I +   P+      +        
Sbjct: 17  LLFILVCLYFIVKLKSVWLPFLHVFIKIMTPFLIAAFITYLLHPVVEYVHKRGMPR---- 72

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +A +S+  LF   + F  Y G+      ++++   N+    +P ++       W + +
Sbjct: 73  -ALAILSIYALFFGGIGFAVYKGI---PLFIAQLEDLNKS---LPMFVRT--YEQWTNYI 123

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF--GMIFLDYCLSIIFMIIALFFFYRD 180
             + ++ P  +    E  +                     ++  +    +    F+  +D
Sbjct: 124 HEETVTWPYDVHQRIEAMMTEVESFISEAVTGAIIGVKQLINRIIVFFIIPFIAFYMLKD 183

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I +         +     +    V + +     G   +    G     ++WL  +  
Sbjct: 184 VELIKKAAWEWTPKKWRYKGMQFLHDVDQTLGGYIRGQLFVCFLIGTAAALSFWLIDMKY 243

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + LG+I  +  +IP   PI     +  +    ++           +  FI    L P +
Sbjct: 244 PLLLGIIVGVTNVIPYFGPIIGAIPAAIIAATVSVNKLLLTVGIVFLLQFIEGNILSPLI 303

Query: 301 VGGPIKLPFLPTFFGLV 317
           VG  + L  L   F L 
Sbjct: 304 VGKSLHLHPLMIMFSLF 320


>gi|158336300|ref|YP_001517474.1| hypothetical protein AM1_3162 [Acaryochloris marina MBIC11017]
 gi|158306541|gb|ABW28158.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 386

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 107/319 (33%), Gaps = 23/319 (7%)

Query: 10  GIMRWMIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
            + +W+ + + LVSLY L   +       +A+++      +      +   S       A
Sbjct: 2   SLGKWIGLVVFLVSLYILWEIRQVLLLGFTAVVLASALNGLVRQLTKR-GLSRGLAVASA 60

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
             S++ +  +  L +    + + +EL+ +V          P  L+ I   +  ++     
Sbjct: 61  IFSIVGVACLIGLLVIPPFVTQAQELLDRV----------PDSLTRIEELINEAQETGLA 110

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY-------CLSIIFMIIALFFFYR 179
              P +   +    L  N  + IP FA      F           L+I+ +++    F  
Sbjct: 111 FGMPSAGIEIPVDSLIDNLREKIPAFAESVVNNFFALFSNSLLVALNILLILVLTIMFLV 170

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D     +    L    +      I  +    + +  +G+        +  G   W+ GV 
Sbjct: 171 DPDQYRRIFIRLFPSFYRRRVDYILGLCDSALDNWIVGILFNMTVIAVFSGLGLWVLGVD 230

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             +A  +I  ++  IP  G  +S        L+    + A  + +   +   +    L P
Sbjct: 231 LVLANALIAGLLEAIPNIGPTLSLIPPMAIALLD-APWKAVAVLILYILIQQLEQYLLVP 289

Query: 299 FLVGGPIKLPFLPTFFGLV 317
            ++   + L    T    +
Sbjct: 290 AVMAKQLSLAPAVTLLSQI 308


>gi|170690529|ref|ZP_02881696.1| protein of unknown function UPF0118 [Burkholderia graminis C4D1M]
 gi|170144964|gb|EDT13125.1| protein of unknown function UPF0118 [Burkholderia graminis C4D1M]
          Length = 690

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/337 (14%), Positives = 103/337 (30%), Gaps = 20/337 (5%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES--STFLAVIATVSVMCLFIVPL 78
           +  LYF +    P+  A+++ F   P+       K     S F AV+ ++SV+ +    +
Sbjct: 38  VACLYFARAVLIPMTLAILLSFLVAPLVKWLGRLKLGHVASVFAAVVMSISVIGVLGAVI 97

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
                     M    + +    +    +     D         L    +  PQ       
Sbjct: 98  TMQLSDLAAGMPRYQATIERKMEAAHTLTVGKLDRFAKAAGQALQRATVEPPQPEPRHDA 157

Query: 139 TFLKTNGIDFIPRFA-------SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +         +P                 L   +S +     +F            L   
Sbjct: 158 SSSDGRAPAAVPVEVREPVPTPLEVARRVLSPAISPLETAFIVFVVMVVILLQRDDLRDR 217

Query: 192 GEHLFPAYWKK----ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              LF +        +     + +   F+    +    G+ +G+  +  GVPS +  G++
Sbjct: 218 AIRLFGSRDLHRTTMVMDEAARRLSRYFVSQLGLNAALGVAIGAGLFFIGVPSPILWGIL 277

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD----KTLRPFLVGG 303
            A++ ++P      + A  +   +   +     + +W       V+    + + P L G 
Sbjct: 278 AALLRLVPYVG--IWIAGGLATALAAAVSPGWDMAIWSIALFVTVELLVGQVVEPLLYGR 335

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIA 339
              L         +      G +GL +  P+ + L+ 
Sbjct: 336 STGLSPFSVVVAAIFWSWIWGPIGLILSTPLTLCLLV 372


>gi|323142132|ref|ZP_08076977.1| putative ATP synthase F0, A subunit [Phascolarctobacterium sp. YIT
           12067]
 gi|322413392|gb|EFY04266.1| putative ATP synthase F0, A subunit [Phascolarctobacterium sp. YIT
           12067]
          Length = 375

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/343 (12%), Positives = 113/343 (32%), Gaps = 8/343 (2%)

Query: 20  ILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEES--STFLAVIATVSVMCLFIV 76
           +L  +Y  L  F      A I+      +   +    ++S  S F   +  +  + + I 
Sbjct: 29  LLAGIYDVLLPFVIGGCMAFIVNVLMKKLEQYWRIIFKQSVVSRFERPVCLLLSLAIIIG 88

Query: 77  PLLFLFYYGMLEMKELVSKVV-----LANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L F     + E+   +  +V        +  I + +   ++        +         
Sbjct: 89  FLAFFVLTIVPELHASMKMLVKMLPPALAKLNIYLQQKAQELSFSADELAVVQAQAKEVY 148

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              +      K   ++      +    +  +  +  +  I  L   +R   +    + + 
Sbjct: 149 QTMLNYLQNNKRLLLEQTFLATASLVEVLANCVIGFVVAIYCLLEKHRLVRNFKWVIFAF 208

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                 AY   + +   ++ R    G  ++A+  G++   +  L   P    + ++ A++
Sbjct: 209 CSKERAAYILHVLQTAEQIFRGFVGGQLVVALLLGVMYFVSMKLCSFPYATVISLLVAVL 268

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++IP    +    +  +L++           +   +   I    L P +VG  + L  L 
Sbjct: 269 SLIPILGTLISALIGCFLILVAAPEKIWYFIILYIVLQRIEADLLYPKIVGKAVGLSELW 328

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
               +  G    G+ G+ +   L +++  +  E +  +   K 
Sbjct: 329 VLAAVTIGASLGGVAGMIVCVPLFSVLYALLAEKVKRLLAEKN 371


>gi|229051108|ref|ZP_04194654.1| hypothetical protein bcere0027_50600 [Bacillus cereus AH676]
 gi|229153599|ref|ZP_04281777.1| hypothetical protein bcere0011_51290 [Bacillus cereus m1550]
 gi|228630203|gb|EEK86854.1| hypothetical protein bcere0011_51290 [Bacillus cereus m1550]
 gi|228722237|gb|EEL73636.1| hypothetical protein bcere0027_50600 [Bacillus cereus AH676]
          Length = 303

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 1/153 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +   +   +          +IA+   ++   A W+ G P  + L ++  ++ +IP  G  
Sbjct: 144 EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVI 203

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS   + +     G I     + +   +   +    L P  +     LP   TF  L+  
Sbjct: 204 ISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFS 263

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              +G+ GL IG  +   +  +   +   ++++
Sbjct: 264 EHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 296


>gi|291296850|ref|YP_003508248.1| hypothetical protein Mrub_2477 [Meiothermus ruber DSM 1279]
 gi|290471809|gb|ADD29228.1| protein of unknown function UPF0118 [Meiothermus ruber DSM 1279]
          Length = 378

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 105/332 (31%), Gaps = 15/332 (4%)

Query: 37  ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI--VPLLFLFYYGMLEMKELVS 94
           A +  + + P+   F  ++   +  + V+    +  L +  V L  +       +  L S
Sbjct: 47  AFVFSYLASPVVRWFEQRRLTRALGVVVVFVGLLFFLGLATVLLAGMTTQLARFVNNLPS 106

Query: 95  KVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFAS 154
            V         +P  +  I       E   +   + Q+L       L       + +  +
Sbjct: 107 LVEPLVGWARGLPEQIGRIELPPVLLEALNQATLNLQTLLQAFTQTLLRGLQSLLAQGGN 166

Query: 155 RFG------MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
             G               I   I  L+   R G ++ + +    +       +K      
Sbjct: 167 LLGFFTGLLGGAFQLLTVITISIYLLYDLPRVGAALFRAVPLPYQPKVQELAQKADAAFG 226

Query: 209 KVIRSTFLGMTIIAIGEGLVLGS------AYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             +R T LG     +   L +         + +  +   ++LG +  I + +P    I  
Sbjct: 227 GYVRGTLLGALFNGVLISLAMYLSFGAFQGFGVGVLTQAMSLGFLAFIFSFVPVLGVIIS 286

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ L +         + L   +    +   + P ++G    L  +     ++ G   
Sbjct: 287 AIPALLLALPLGWLAFAVVALVLWVC-NQIQGVVWPIIMGRTTSLHPVTGIAAVLIGGSL 345

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            G+ G  +   L+A   +++ +  +  +  +E
Sbjct: 346 FGVAGALLAVPLVAFFKILYNDYYLNSRFYQE 377


>gi|294140385|ref|YP_003556363.1| hypothetical protein SVI_1614 [Shewanella violacea DSS12]
 gi|293326854|dbj|BAJ01585.1| conserved hypothetical protein [Shewanella violacea DSS12]
          Length = 367

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/323 (13%), Positives = 100/323 (30%), Gaps = 22/323 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G      + +IL  +        P + +  I     P+  +    K   S   AV+  +
Sbjct: 18  KGFAIMAFIVVILAGIKTASPIVVPFVLSAFIAVICNPVIGAMTRFKVPRSF--AVLILM 75

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +  + L  +    + E    + +                           W     
Sbjct: 76  VFIVMMGLWLAQIVGSSINEFSNQLPQYRDQLVDQFG-----------------WIVQKL 118

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              ++ I  E  L            +           ++  +I+ + F   +  ++ ++L
Sbjct: 119 QALNIIITKEQILAYFDPGIALSMTTNMLTGVGGVMANLFLIILTVVFMLFESQTLPKKL 178

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
               +   P    +        +    +  T++++  G+V+G    + GV   +   VI 
Sbjct: 179 HFALDD--PEMRMQQIDKFLHSVNQYMVIKTLVSLATGVVVGFGLAIIGVDYVLLWAVIA 236

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP  G+ I+     +   I+     A    L       ++   + P  +G  + L
Sbjct: 237 FLFNYIPNIGSIIAAIPSVLLAFIQLGPAAAGATALLYLGTNMVMGNLIEPRYMGKGLGL 296

Query: 308 PFLPTFFGLVGGVRTMGLLGLFI 330
             L  F  L+     +G +G+ +
Sbjct: 297 STLVVFLSLIFWGWLLGSVGMLL 319


>gi|170017118|ref|YP_001728037.1| permease [Leuconostoc citreum KM20]
 gi|169803975|gb|ACA82593.1| Predicted permease [Leuconostoc citreum KM20]
          Length = 331

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/341 (12%), Positives = 107/341 (31%), Gaps = 27/341 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +   R+ ++ +I++ +  LK F   +L  +I  + +             S +    + 
Sbjct: 8   QNRRFYRYFVLSVIILLIVLLKQFMTLLLLTIIFSYLAMNAGKRVQRVTRLSRSLSIALV 67

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + VM   I  +         ++K ++     ++                          
Sbjct: 68  YIVVMAFIIWAVEHGANTVAHQVKSMIHLATDSS-----------------------WHT 104

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
               + +    + +  +   + +                 +I  ++  F F      +  
Sbjct: 105 TGIFKEVYKNIQQYSNSLNTEQLISKGFTQLNQVGHVLYELILALLFSFIFSMTYPQLRS 164

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVI---RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
              +     +  ++ +   IV + I      F    +I +   + +         P  + 
Sbjct: 165 WSMTFIHSPYKRFFGEFYIIVHRFIIILGRLFEVQLMICVINTIAMVIVLTFLNFPYLIG 224

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
             ++  I+ +IP  G  IS   +++   I G+      + +  A+  F+    L P  + 
Sbjct: 225 FAILIFILGLIPVVGVLISLVPLTVTAFIIGDWHTVLVILVAVAVIHFMESYFLHPHFMS 284

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               +P L     L+   +  G+ GL IG  ++  +   ++
Sbjct: 285 QRTHMPILVILLNLIIMEKVFGVWGLIIGLPILTFLLDFFR 325


>gi|224476107|ref|YP_002633713.1| hypothetical protein Sca_0614 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420714|emb|CAL27528.1| putative membrane protein [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 361

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/323 (12%), Positives = 108/323 (33%), Gaps = 17/323 (5%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           +  +K    P + +  + +   P+    + K          I  V ++ +    +  +  
Sbjct: 34  IIIVKSVLLPFILSGFLFYVFLPL-QKLLEKYRVPRWGSITIIFVILIGIITAAVTVVAP 92

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             M ++  L+ +     Q    + ++               +    P  +       +K+
Sbjct: 93  LIMNQINNLIKQAPQLQQETQTMIKY------------ALDQMDKLPNDVTDRVNKVVKS 140

Query: 144 NGIDF--IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            G +   +   +       +     +I +   L +  +D       +  L       +  
Sbjct: 141 FGDNVTNVLTNSISIVSQIISTLFLLIMVPFFLIYMLKDHEKFIPSIAKLFNGDRKVFVV 200

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPI 260
            + + +   ++S   G   ++   G++L   Y + G+   + L +   +  MIP  G  +
Sbjct: 201 NLLKDLNHTLQSYIQGQVTVSFILGVILYIGYSIIGLDYTLLLVLFAGVANMIPFLGPWM 260

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
           SF   +I  +I+ +      + +   +   +    + P ++G  + +  L     ++   
Sbjct: 261 SFAPAAIIGIIQ-SPTAFIWVCVVTLVAQQLEGNVITPNVMGKSLSIHPLTIIVVILAAG 319

Query: 321 RTMGLLGLFIGPVLMALIAVIWK 343
              G + + +   L A+I  I +
Sbjct: 320 NLGGFVLILVAVPLYAVIKTIVR 342


>gi|302875978|ref|YP_003844611.1| hypothetical protein Clocel_3161 [Clostridium cellulovorans 743B]
 gi|307686694|ref|ZP_07629140.1| hypothetical protein Ccel74_00981 [Clostridium cellulovorans 743B]
 gi|302578835|gb|ADL52847.1| protein of unknown function UPF0118 [Clostridium cellulovorans
           743B]
          Length = 307

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 58/160 (36%), Gaps = 1/160 (0%)

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-G 257
             +                  +IA+   ++   A W+ G P  + LG +  +++ IP  G
Sbjct: 148 RLEYFGTNFINSFGKVIQAQFLIALVNSILSIIALWIMGFPQLIGLGFMIFVLSFIPVAG 207

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
             IS   +S+     G +     + +  A+        L P L+     LP    F  L+
Sbjct: 208 VIISLIPLSLIAFKIGGVTKLISVIIMIALLHSFESYVLNPKLISDKTSLPIFFIFAILI 267

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
            G   MG+ GL +G  L   I  I    I+   +  + + 
Sbjct: 268 LGKEFMGMWGLLLGIPLFIFILDILDVKIVEDSKKIKNVD 307


>gi|194364041|ref|YP_002026651.1| hypothetical protein Smal_0263 [Stenotrophomonas maltophilia
           R551-3]
 gi|194346845|gb|ACF49968.1| protein of unknown function UPF0118 [Stenotrophomonas maltophilia
           R551-3]
          Length = 369

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/333 (13%), Positives = 105/333 (31%), Gaps = 15/333 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +    +  +L+  +    PVL A+       PI           +        +  + +
Sbjct: 34  VLAALAVGYTLWAAQDIILPVLLAMFFALVGNPILRLLQKLWIPRA--------LGALLI 85

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               L       +  +   +     A Q    V R + D+   +  +    ++ +     
Sbjct: 86  LGAGLGVTGSLAVQLIGPAMEWAQEAPQQLRKVARQVQDLTKPVQQANQAAENFARVAGG 145

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
               +  +    +D   R  +R   +       +  +++ LFF           +     
Sbjct: 146 DSNRKVQVIRTQLDDPYRMLTRAPRLAASV---LAVVLLTLFFMIYGQSLQRAAIALFPN 202

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGVITAIM 251
                +   I R + + +    L +++I    GLV      L G+     +  G + A++
Sbjct: 203 RQQQRFTSDILRSIEREVSRYVLTISVINTLVGLVFAGVLMLLGISLQEALLWGTVAALL 262

Query: 252 AMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
              P   P+   A+ + +      +   A            +  + + P ++G  +KL  
Sbjct: 263 NFAPYVGPLIGVALMLLMGFVEFRDPLQALLPAAAYLGLHTLEGQMVTPIVLGRRMKLSP 322

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L     L+      G++GL +   L+  I ++ 
Sbjct: 323 LVLILALMLFGWAWGMIGLLLAVPLLVCIKLVL 355


>gi|212697463|ref|ZP_03305591.1| hypothetical protein ANHYDRO_02033 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675547|gb|EEB35154.1| hypothetical protein ANHYDRO_02033 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 386

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/321 (14%), Positives = 113/321 (35%), Gaps = 5/321 (1%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            P++ AL+I     P               ++ +    ++ L +  L++   + + ++  
Sbjct: 36  MPIILALVIVGLLAPSIRKIDHILPIKHKAVSYLLGTILLLLLLFFLVWFVQFIVNQVSG 95

Query: 92  LVSKVVL-ANQHGIPVPRWLSDIPGGMWASELWTKH-LSHPQSLKILSETFLKTNGIDFI 149
           LV  ++   ++    V  W++D    +     +  + +             L+ N I+  
Sbjct: 96  LVGNIISNWDKIVSSVNTWINDANSQINLMPDYVSNTIRSGLKSLYEWLGSLQKNAINIT 155

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
             F   F     +    +I  ++A +    D  ++  +   L           I  +   
Sbjct: 156 FGFTQAFINTSNEIIFFVITFVVAFYIILGDMQNVYDKYHLLIPEKSKNNLSLIRAVFKN 215

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIY 268
              +       +A    +++    +  G    + + +I   + ++P  G  I     SI 
Sbjct: 216 STWNYIKSQLKLAFLCTIIMAIFLFFIGQQYFMPIALILGFVDLLPMIGPIIVLLPWSII 275

Query: 269 -LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            LLI  N   +  L +       +  + + P ++G    +  + +   L  G++  G++G
Sbjct: 276 ELLIFDNTIKSLGLLIVLTAWTGL-RQVIAPKVIGSSADIHPILSVIALYAGLKLFGVMG 334

Query: 328 LFIGPVLMALIAVIWKESIMA 348
             + PV+   I  I++  I+ 
Sbjct: 335 AILLPVVFIFIVGIYRSGIID 355


>gi|209527315|ref|ZP_03275824.1| protein of unknown function UPF0118 [Arthrospira maxima CS-328]
 gi|209492241|gb|EDZ92587.1| protein of unknown function UPF0118 [Arthrospira maxima CS-328]
          Length = 382

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/303 (12%), Positives = 93/303 (30%), Gaps = 6/303 (1%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             I +  L+ +K     + +A+++      +   F   K    +    ++        I+
Sbjct: 12  FLIAIYILWRIKQALLMIFAAVVLATALNRLTRQFQRLKLPR-SLAVFLSISLFFLGIII 70

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVP----RWLSDIPGGMWASELWTKHLSHPQS 132
             L +    + ++++L  +V    + G+ +      +L     G     L        Q 
Sbjct: 71  GFLLVVPPLINQLEQLAKQVPAGLEQGLKLLNLLIDYLRTDLNGPLREYLSEVSRDLRQI 130

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                    +      I  F    G         ++ +++ +     D  +  +    L 
Sbjct: 131 RIEQIIQQAQALSNQLIGGFGVVVGTTVEGLVSILLILVLTM-MLLADPQAYRRSSLQLI 189

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
              +      I       +    +G  +  I   L+     W+  VP   A  ++  ++ 
Sbjct: 190 PAFYRRRMNHILDTCEIALGRWLIGALLNMICVTLLTVIGLWILRVPLIFANAILAGLLN 249

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +IP   P       + + +  + + AT + +   I   I    + P L+   + L    T
Sbjct: 250 LIPNIGPAVSVIPPMAIALLDSPWKATLVVMLYIIIQQIETAVIMPSLMAYQVSLLPAIT 309

Query: 313 FFG 315
              
Sbjct: 310 LLA 312


>gi|192293063|ref|YP_001993668.1| hypothetical protein Rpal_4702 [Rhodopseudomonas palustris TIE-1]
 gi|192286812|gb|ACF03193.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           TIE-1]
          Length = 371

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 54/316 (17%), Positives = 114/316 (36%), Gaps = 19/316 (6%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           K FF P+++A ++G    P  S     +   +    +I T+ +  +    ++ L    ++
Sbjct: 57  KPFFLPMVTAFVVGTMVSPAASFLERFRIPRAVSAVLIVTLGLGTVIF--MIGLISAPLI 114

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           E    + ++    +  + V              ++W +  S     + L +  ++   ID
Sbjct: 115 EWSSRIPEIGSLLRDKLHVLD---------RPLQMWRQIQSSLSGSESLPQPSVQMPKID 165

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
           ++  F S      L   L  + M++     ++D       + +           +I   +
Sbjct: 166 WVFEFLSP----TLTEVLLFLVMLVLFVAGWKDLRR--SLVMNFAGREARLRTLRILNEI 219

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
              + +  L +T+I +  G   G     AG+P+   LG + A++  IP   P     +  
Sbjct: 220 EGSLGAYLLTVTVINLCYGAATGLLCAAAGMPNPAGLGALAAVLNFIPIIGPFVMFVIMT 279

Query: 268 YLLIKGNIFNATCLF--LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            + I         L   L   +  F     + P ++G  + L  L  F  L       G 
Sbjct: 280 VVGIISMPTLGAGLLAPLGFVLLTFFEGHFITPTIIGRRLSLNTLAVFITLAFWTWLWGP 339

Query: 326 LGLFIGPVLMALIAVI 341
           +G F+   L+ +  V+
Sbjct: 340 MGSFLASPLLIVGLVL 355


>gi|261339650|ref|ZP_05967508.1| permease, PerM family [Enterobacter cancerogenus ATCC 35316]
 gi|288318476|gb|EFC57414.1| permease, PerM family [Enterobacter cancerogenus ATCC 35316]
          Length = 344

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/328 (16%), Positives = 116/328 (35%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +        
Sbjct: 7   TLNGLKIVIMLGMLVIILTGVRFAADIIVPFILALFIAVILNPLVHRMVRLRIPR----- 61

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           V+A   ++ + IV ++ L  Y    + EL             +P++ S +   +   E W
Sbjct: 62  VLAITLLIGIIIVAMVLLVAYLGTSLNELAR----------TLPKYRSSLAIPLMQLEPW 111

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +       ++I  E  L+    +      +       +   SI  + + + F   +   
Sbjct: 112 LQR----AGIEISVEELLRYIDPNAAMTIVTSLLAQLSNAMTSIFLLFLTVVFMLLEVPQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +L  +     P       +     +    +  T I++  G V+        V     
Sbjct: 168 LPAKLQQMMVR--PVEGMGAIQRALDSVSRYLVLKTAISLVTGAVVWGMLMALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++     + +L+   +++A  L     I   I    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPILQVLVFSGLYDALVLLAGYLIVNLIFGNILEPRMMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|30023467|ref|NP_835098.1| hypothetical protein BC5437 [Bacillus cereus ATCC 14579]
 gi|206970229|ref|ZP_03231182.1| putative membrane protein [Bacillus cereus AH1134]
 gi|228961701|ref|ZP_04123308.1| hypothetical protein bthur0005_51420 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229072903|ref|ZP_04206101.1| hypothetical protein bcere0025_50630 [Bacillus cereus F65185]
 gi|229082649|ref|ZP_04215112.1| hypothetical protein bcere0023_52660 [Bacillus cereus Rock4-2]
 gi|229130684|ref|ZP_04259639.1| hypothetical protein bcere0015_51170 [Bacillus cereus BDRD-Cer4]
 gi|229181686|ref|ZP_04309011.1| hypothetical protein bcere0005_50250 [Bacillus cereus 172560W]
 gi|229193690|ref|ZP_04320633.1| hypothetical protein bcere0002_53330 [Bacillus cereus ATCC 10876]
 gi|296505860|ref|YP_003667560.1| hypothetical protein BMB171_C5032 [Bacillus thuringiensis BMB171]
 gi|29899028|gb|AAP12299.1| hypothetical Membrane Spanning Protein [Bacillus cereus ATCC 14579]
 gi|206734806|gb|EDZ51975.1| putative membrane protein [Bacillus cereus AH1134]
 gi|228589843|gb|EEK47719.1| hypothetical protein bcere0002_53330 [Bacillus cereus ATCC 10876]
 gi|228601882|gb|EEK59378.1| hypothetical protein bcere0005_50250 [Bacillus cereus 172560W]
 gi|228652767|gb|EEL08650.1| hypothetical protein bcere0015_51170 [Bacillus cereus BDRD-Cer4]
 gi|228701081|gb|EEL53604.1| hypothetical protein bcere0023_52660 [Bacillus cereus Rock4-2]
 gi|228710246|gb|EEL62222.1| hypothetical protein bcere0025_50630 [Bacillus cereus F65185]
 gi|228797977|gb|EEM44983.1| hypothetical protein bthur0005_51420 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|296326912|gb|ADH09840.1| hypothetical protein BMB171_C5032 [Bacillus thuringiensis BMB171]
          Length = 347

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 1/153 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +   +   +          +IA+   ++   A W+ G P  + L ++  ++ +IP  G  
Sbjct: 188 EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVI 247

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS   + +     G I     + +   +   +    L P  +     LP   TF  L+  
Sbjct: 248 ISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFS 307

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              +G+ GL IG  +   +  +   +   ++++
Sbjct: 308 EHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 340


>gi|300855679|ref|YP_003780663.1| putative permease [Clostridium ljungdahlii DSM 13528]
 gi|300435794|gb|ADK15561.1| predicted permease [Clostridium ljungdahlii DSM 13528]
          Length = 342

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 67/202 (33%), Gaps = 4/202 (1%)

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK---ISRIV 207
             + +       + ++I   I+   FF     +I + L    +      +       +  
Sbjct: 141 NISLQLATNVGKWSVNIFISIMLSLFFILGKHNIIEFLKKFKDSKVSGLYNYLCFFGKNF 200

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVS 266
                       IIA    ++      +   P  V LG +  I+++IP  G  IS   +S
Sbjct: 201 LNSFGKVMQAQIIIAFFNTIISVIMLSIMNFPQLVTLGFMIFILSLIPVAGVIISLIPLS 260

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           +     G       + +  AI   I    L P L+   +KLP   TF  L+     MG  
Sbjct: 261 MVAFSIGGFTKVIYVLIMVAIIHVIESYVLNPKLMSSKVKLPIFFTFIILIVSEHIMGAW 320

Query: 327 GLFIGPVLMALIAVIWKESIMA 348
           G  IG  L   I  +    I  
Sbjct: 321 GFLIGIPLFMFILDLLDVKIHD 342


>gi|262377552|ref|ZP_06070773.1| GAF sensor protein [Acinetobacter lwoffii SH145]
 gi|262307439|gb|EEY88581.1| GAF sensor protein [Acinetobacter lwoffii SH145]
          Length = 655

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 61/191 (31%), Gaps = 3/191 (1%)

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
           A ++G        ++  + + +         +  +L  L           +     + I 
Sbjct: 26  AMQWGARIFHPLATVGIVFLFVVLILLSRKDLHDRLLKLLGGNLNVGTDALDDAADR-IG 84

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
           +      ++ +  G+ +    WL GVP+ +  G++   M  +P   P+      I L   
Sbjct: 85  TYLRMQLLVNVTFGIPMAVGLWLIGVPAAIMWGIVAIGMRFLPYVGPMISALFPITLAFA 144

Query: 273 GNIFNATCL--FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            +      L       +   I +  + P+L G    L  L             G  GL +
Sbjct: 145 VDPGWNMVLWTIGLILLLELISNNVIEPWLYGESTGLSTLAIILAATFWTTLWGAAGLIL 204

Query: 331 GPVLMALIAVI 341
              L A + V+
Sbjct: 205 STPLTACLLVL 215


>gi|127513326|ref|YP_001094523.1| hypothetical protein Shew_2398 [Shewanella loihica PV-4]
 gi|126638621|gb|ABO24264.1| protein of unknown function UPF0118 [Shewanella loihica PV-4]
          Length = 389

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 106/335 (31%), Gaps = 23/335 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G      + +IL  +        P + +  I     P  +     K   +  LAV   +
Sbjct: 12  KGFAIMAFIVVILAGIKAASPIVVPFVLSAFIAVICNPAINGMTRLKLPRA--LAVAIMM 69

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + L  + L  L    + E    +                             W     
Sbjct: 70  VFIVLMGLWLASLVGSSINEFSRQLPLYRDQLVEQFS-----------------WVLTKL 112

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              ++++  E  L            +           ++  +I+ + F   +   + ++L
Sbjct: 113 QALNIEVSKEQILAYFDPGIALSMTTNMLSSVGGVMANLFLIILTVVFMLFEAQDLPKKL 172

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
               +   P    K      + +    +  T++++G G+V+G+   L GV   +   V+ 
Sbjct: 173 HFALDD--PDMRIKQIDKFLQSVNQYMVIKTLVSVGTGVVVGTGLALMGVDYALLWAVVA 230

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP  G+ I+     +   I+     A    L       ++   + P  +G  + L
Sbjct: 231 FLFNYIPNIGSIIAAIPPVLLAFIQLGPAGAGGTALLYLATNTVMGNIVEPKYMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
             L  F  L+     +G +G+ +  P+ M +   +
Sbjct: 291 STLVVFLSLIFWGWLLGSVGMLLSVPLTMIVKIAL 325


>gi|125596938|gb|EAZ36718.1| hypothetical protein OsJ_21054 [Oryza sativa Japonica Group]
          Length = 456

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 79/203 (38%), Gaps = 9/203 (4%)

Query: 160 FLDYCLSIIFMIIALFFFY-RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
            L++   ++  +  L++    +G   ++Q+  L   L      +   ++   I S  L  
Sbjct: 259 VLNFVSQLMVFLWVLYYLITVEGGGATEQVIDLLP-LSKQVKDRCVEVIDHAISSVLLAT 317

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFN 277
             IAI +G +    + L  V       V   I A++P   P +S    +  LL++G    
Sbjct: 318 AKIAIFQGCLTWLLFKLFKVHFVYTSTVFAIISALLPILPPWLSSIFAAGQLLMEGRYVL 377

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM--GLLGLFIGPVLM 335
           A  + +   I +      ++  + G         T   ++GG+      L G  +GP++M
Sbjct: 378 AIVVTVVHLIIMDYGTTVIQEDIPGYNG----YLTGLSIIGGMALFPNALEGAILGPLIM 433

Query: 336 ALIAVIWKESIMAIKENKEKISS 358
            ++  +       +  + E+ SS
Sbjct: 434 TVVMALKNLYTEFVLADSEETSS 456


>gi|239624740|ref|ZP_04667771.1| sporulation integral membrane protein [Clostridiales bacterium
           1_7_47_FAA]
 gi|239521126|gb|EEQ60992.1| sporulation integral membrane protein [Clostridiales bacterium
           1_7_47FAA]
          Length = 357

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/342 (15%), Positives = 113/342 (33%), Gaps = 17/342 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM--CLFIVP 77
           +     +L    AP L+  I      P       +             + V+    F+V 
Sbjct: 21  VYAGFRYLLPLVAPFLAGYIFALLLRPSARFLAYRMRIHVKGKTFHMPIGVIGGAEFLVL 80

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +  L     +   +L ++  +   H   +P W+      +W +    +  +         
Sbjct: 81  ISILGTGLYMGAVKLCAEGKMLMMH---LPAWIDR--FDIWLTGSCHRVETAFGLRYDCV 135

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF-----MIIALFFFYRDGFSISQQLDSLG 192
                      +    +      +   L+II       II+L  F     S+ +  D   
Sbjct: 136 ADLAGEMLYQLVDTGKTAAMPFLMTNSLTIIACLAKWAIISLVVFLAAILSLQEMEDLRT 195

Query: 193 EHLFPAYWKKISRIVPKVI---RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                 + K+ + I  +++   ++ F    II      +  +  ++ G P ++  G+   
Sbjct: 196 RRDQSTFRKEFNLIGGRLVQTGKAWFKSQGIILFITTGLCIAGMFIIGNPYYIMAGIGIG 255

Query: 250 IMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I+  +P  G        ++  L+ G+   A  L     +  F V + L   ++GG + L 
Sbjct: 256 ILDALPIFGTGTVLIPWALLELLTGDWKQAVILTGLYLVCYF-VRQILEVRMMGGQVGLS 314

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            L T   +  G+   G  G  +GP+ + L+  + +       
Sbjct: 315 PLETLASVYVGLELFGFFGFILGPLGLLLVEDLVEVWNRETD 356


>gi|229160935|ref|ZP_04288924.1| hypothetical protein bcere0009_17240 [Bacillus cereus R309803]
 gi|228622503|gb|EEK79340.1| hypothetical protein bcere0009_17240 [Bacillus cereus R309803]
          Length = 337

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/324 (16%), Positives = 114/324 (35%), Gaps = 25/324 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +G  R++++ I+ + LY LK     +L   I+ F           K   +   +    
Sbjct: 9   RSRGFQRFLVLIIVALVLYGLKSMINLILITFILTFLMDRFQRFISKKLNVNRKIVIACL 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++      L        +++ +L+ +  L  Q+           P      +     
Sbjct: 69  YIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQN-----------PPDNEIIKYALST 117

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           ++  +  K + +      G+D I +  +  G + L   LS+I  +  L     +   I  
Sbjct: 118 INGMEVSKYIEQ------GVDVIYQSIANIGKVSLQILLSLILSLFFL----LEKERIIT 167

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 +     ++++I+    +  RS         +IA+   ++   A  + G P  + 
Sbjct: 168 FTSKFKDSRLKIFYEEIAYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLLV 227

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L V+  ++ +IP  G  IS   + I     G +     + ++  +   +    L P  + 
Sbjct: 228 LAVMIFLLGLIPVAGVIISLFPLCIIAYNVGGVIYVVYILVFITVIHALESYFLNPKFMS 287

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLL 326
               LP   TF  L+     +G+ 
Sbjct: 288 AKTNLPIFFTFMILIFSEHFLGIW 311


>gi|315037276|ref|YP_004030844.1| permease [Lactobacillus amylovorus GRL 1112]
 gi|325955754|ref|YP_004286364.1| permease [Lactobacillus acidophilus 30SC]
 gi|312275409|gb|ADQ58049.1| putative permease [Lactobacillus amylovorus GRL 1112]
 gi|325332319|gb|ADZ06227.1| permease [Lactobacillus acidophilus 30SC]
          Length = 345

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/336 (15%), Positives = 111/336 (33%), Gaps = 27/336 (8%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT-VSVM 71
           R ++  +I+  LY ++     +L   I  +    +         +  T + V+ T + ++
Sbjct: 16  RVVVFLLIVACLYEMRAMMNTILLTFIFTYVIVHLIRLVQRYIPKMPTGIIVVVTYLIIL 75

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L    +       M+++ ++V  V+   +               +      T+++S  +
Sbjct: 76  ALLYFVITVYLPMLMVQISKMVKSVMAFYESD-----------ESLRLMSYVTRYISKGE 124

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ---- 187
            ++                 FA           ++    +I  FF+  +   + +     
Sbjct: 125 LIEQAKHAM----------TFAFHTATNIGTLTIATFMSLILSFFYTIELKKMREFSSLF 174

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + S              +             ++IAI    +      +  +P  VALG++
Sbjct: 175 VKSGYFKWLFEDICYFGKKFTNTFGVVLEAQSLIAICNTALTMIGLAIMRMPQIVALGLM 234

Query: 248 TAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             I++++P  G  IS   +SI     G I     +F+   I   +    L P  +    +
Sbjct: 235 VFILSLVPVAGVIISLIPLSIVGYSVGGIRYVIYIFIMIMIIHAVEAYVLNPKFMASKTE 294

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           LP   TF  L+      G  GL +G  +      + 
Sbjct: 295 LPIFYTFLVLLVAEHFWGSWGLIVGVPIFTFFLDVL 330


>gi|167758907|ref|ZP_02431034.1| hypothetical protein CLOSCI_01253 [Clostridium scindens ATCC 35704]
 gi|167663314|gb|EDS07444.1| hypothetical protein CLOSCI_01253 [Clostridium scindens ATCC 35704]
          Length = 497

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 70/207 (33%), Gaps = 1/207 (0%)

Query: 155 RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRST 214
                  +  + II  +  LF          + + ++           ++    ++    
Sbjct: 257 NILNEIFNALIGIIISVYILFSKETFIRQTKKCVYAILSPRHANMVLHLTTKSNEIFGGF 316

Query: 215 FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGN 274
            +G  I +   G++      +  +P  V + VI  +  +IP   P      S  L++  +
Sbjct: 317 IIGKIIDSAIIGVLCFFGLTILNMPYAVLVSVIVGVTNVIPFFGPYIGAIPSAILIMLAD 376

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
                   ++  +        L P ++G    L        ++ G    G +G+ +G   
Sbjct: 377 PIKGLYFIIFILLLQQFDGNILGPKILGNSTGLSAFWVIVAILLGGGLFGFVGMIMGVPT 436

Query: 335 MALIAVIWKESIMAIKENKE-KISSNF 360
            A++  I +  +    E K+   +SNF
Sbjct: 437 FAVLYYIVQMIMNYRLERKKLPANSNF 463


>gi|228955687|ref|ZP_04117685.1| hypothetical protein bthur0006_50370 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228804056|gb|EEM50677.1| hypothetical protein bthur0006_50370 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 347

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 1/153 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +   +   +          +IA+   ++   A W+ G P  + L ++  ++ +IP  G  
Sbjct: 188 EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVI 247

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS   + +     G I     + +   +   +    L P  +     LP   TF  L+  
Sbjct: 248 ISLFPLCMIAYNIGGIMYVVYILIIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFS 307

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              +G+ GL IG  +   +  +   +   ++++
Sbjct: 308 EHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 340


>gi|39997549|ref|NP_953500.1| hypothetical protein GSU2454 [Geobacter sulfurreducens PCA]
 gi|39984440|gb|AAR35827.1| membrane protein, putative [Geobacter sulfurreducens PCA]
 gi|298506491|gb|ADI85214.1| membrane protein UPF0118 [Geobacter sulfurreducens KN400]
          Length = 346

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/325 (10%), Positives = 100/325 (30%), Gaps = 11/325 (3%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + +   ++   ++ + Y ++   +  L + +  +   P+      +      +  +   
Sbjct: 9   NRVVAALLVGGALIAAGYAIRHTVSCFLLSFVTAYLLDPVLVVMERR-GVRRPWGILFLY 67

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             +    +   + L  +  L  +  ++ +    Q G  +           +A E W    
Sbjct: 68  ALLAVFSVFFFIVLVPFLSLRWEAFITGLPAYLQKGKQIVFAWKSRAVPPYAVEEWRWLF 127

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                             +  +           +    +++   I +FF         + 
Sbjct: 128 DTAAGQADKL--------LAKLGAGVYAAAEGLVFNLFNLVLAPILVFFMLWYKKEFMET 179

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
             +            + R V + I     G  ++++   ++   A ++ G+   +  G+ 
Sbjct: 180 AAAWLPASRREVLLALGREVNESIGGYIRGQFMVSVIVAVLSTVALFVIGIDYPIVNGIF 239

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGGPI 305
             + +++P    I  T   ++            L + GA  +  F+    ++P +    +
Sbjct: 240 AGLASVLPFIGVILATLPPLFFAYVQYESGMVLLQVIGAFSVIYFLEGYLVKPLVFKESM 299

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFI 330
            L  L T   ++     MG  G+ +
Sbjct: 300 DLNPLVTIIVVMVFGELMGFWGILL 324


>gi|329848057|ref|ZP_08263085.1| hypothetical protein ABI_11260 [Asticcacaulis biprosthecum C19]
 gi|328843120|gb|EGF92689.1| hypothetical protein ABI_11260 [Asticcacaulis biprosthecum C19]
          Length = 359

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/333 (13%), Positives = 104/333 (31%), Gaps = 19/333 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q +   ++     +  Y L   +  +  A++I      I    +   + ++         
Sbjct: 12  QRVGFVVLAVAATLLAYNLMNLWILIFGAIVIAVVLRGIAEPLMKVCKLNA--------- 62

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
                   PL  L    ++      +  +        V      +P      +   +   
Sbjct: 63  --------PLAVLAAVLLVVGVVATTFYLFGRDIVAQVQILSKQLPVAWAELQTRLEAAG 114

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               ++   +   +  G   +     +     L    + +  +IA              +
Sbjct: 115 LSDEVQAQIDAAGQQAGG--VASKIPQLAGGLLSGVANFLVALIAGILLAIHPGQYRDGI 172

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L    + A  K    +  K ++  FLG  +  I  G++ G   W+ GVPS +ALG+++
Sbjct: 173 VFLFPDSYKARVKDSLNVAGKALQLWFLGQFVSMIVVGVMTGVGLWVMGVPSALALGMMS 232

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            +   +P   P+      + L     +       +       +    + P +      +P
Sbjct: 233 GLAQFVPIVGPVISAGPGLLLAGAAGLDKFLYALVLYVGVSQLEANLITPAVQNRISSVP 292

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            + T F +VG    +G +G+     L  ++  +
Sbjct: 293 MVLTLFAVVGFAGLLGPVGVLYAMPLTVVLYTL 325


>gi|296156032|ref|ZP_06838871.1| protein of unknown function UPF0118 [Burkholderia sp. Ch1-1]
 gi|295893538|gb|EFG73317.1| protein of unknown function UPF0118 [Burkholderia sp. Ch1-1]
          Length = 678

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/358 (12%), Positives = 112/358 (31%), Gaps = 35/358 (9%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G++   +   ++  LYF      P+  A+++ F   P+  +    +        V +  +
Sbjct: 27  GLIALAVGVTVVACLYFASAVLIPMTLAILLSFLVAPLADALTRLRLGH-----VASVFA 81

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW------ASELW 123
            + + +  +  L      ++ +L + +               ++  G        A +  
Sbjct: 82  AVVISVSVIGMLGAVIATQLTDLAAGMPRYQATIERKMETAHNLTIGKLNRFADAAGQAL 141

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFAS-------------RFGMIFLDYCLSIIFM 170
            +    P       ++    +        A+                   L   +S +  
Sbjct: 142 QRATIEPPQPAPQRDSASPGSTRSTANAPAAVPVEVREPVPTPFELARRVLSPAISPLET 201

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFP----AYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
              +F            L      LF          +     + +   F+    +  G G
Sbjct: 202 AFIVFVVMVVILLQRDDLRDRAIRLFGSRDLHRTTTVMDEAARRLSRYFVSQLGLNAGVG 261

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG- 285
           +V+G+  +L GVPS +  G++ A++ ++P      + + ++   +   +     + +W  
Sbjct: 262 VVIGTGLFLIGVPSPILWGILAALLRLVPYVG--IWISATLATALAAAVSPGWSMAIWSL 319

Query: 286 ---AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIA 339
                   +V + + P L G    L         +      G +GL +  P+ + L+ 
Sbjct: 320 ALFVTVELLVGQVVEPLLYGRSTGLSPFSVVVAAIFWSWIWGPIGLILSTPLTLCLLV 377


>gi|154148283|ref|YP_001406674.1| transport protein [Campylobacter hominis ATCC BAA-381]
 gi|153804292|gb|ABS51299.1| transport protein [Campylobacter hominis ATCC BAA-381]
          Length = 339

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 56/339 (16%), Positives = 118/339 (34%), Gaps = 21/339 (6%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M     ++    + II   L        P L A  I   + PI       K        +
Sbjct: 1   MKLQTFLITLASIVIIFAGLKAANSVVVPFLLATFIAIVTSPILDILEKVKIPR-----I 55

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           I+ + V    +  L F+    +  M + + ++   N+               +  +E   
Sbjct: 56  ISFILVTFCMLGFLAFIGSVAVGTMFDFLGQLPEFNRK------------FQIILNEWME 103

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
              +      I+ +  +     + I    S             +F+++ + F   +   +
Sbjct: 104 NLNNTEFRDMIVFDPNMFNLESNKIITTTSSLVRKTGSIMSMWLFILLLVAFMLFETRIM 163

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +++  L      +            ++      TI++   G+++GS  +   +P  V  
Sbjct: 164 QEKVKYLSVKY--SNAIVFVHSFVYNLKRYLFIKTIVSTATGIIIGSGLYYLNIPYAVLW 221

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           G++  IM  IP  G+ ++        L+ GNI +A  + +       I+   L P LVG 
Sbjct: 222 GIVAFIMNYIPTIGSFVAAVPAVFIALLSGNISDAIWVIILYTATNTILGVILEPRLVGE 281

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            + +  +   F L+     +G+ GLF+  P+ M +   +
Sbjct: 282 ELGISTITVLFSLLLWGYVLGIGGLFLAVPLTMTIQIAL 320


>gi|284049859|ref|ZP_06380069.1| hypothetical protein AplaP_00130 [Arthrospira platensis str.
           Paraca]
 gi|291565655|dbj|BAI87927.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 387

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/337 (10%), Positives = 109/337 (32%), Gaps = 8/337 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           + ++ + I L  L+  +     + +++I+      +      +   S      +A   V 
Sbjct: 7   IAFLFLAISLTILWEFRHILLLLFTSVILAIALNGLVRWL-QRFRLSRGKAVFLAISLVS 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L I+    +    + + ++L++ V    +      RW+      +    +W   ++   
Sbjct: 66  FLGIMFFSLIMPPFLDQFQQLLNLVPRGYER---FSRWID---LTLQQPPIWLPEINLRL 119

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                    +     + +  F + F          ++  +  L     +  S  + +  L
Sbjct: 120 PGFTEIARQVGPLAQNILGNFFAVFNFSVNTLLQGLLIFVFTL-MLVANPASYRRLVVRL 178

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +     +I  +    +     G+ I ++    +   +  +  V   +A  ++  + 
Sbjct: 179 FPSFYRRRADEILGLCEISLLQWMRGIAINSVFIATLSYISLTILNVEFVLAHALLAGVF 238

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            ++P   P       + + +  +   A  + +   I   +      P ++   I L    
Sbjct: 239 NLVPNIGPTLSVVFPVSVALLDSPGKAFLVLVAYIIIQNLESYWFSPMIMQRQISLLPAA 298

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           T    +   R +G  GL +   L  +     +++++ 
Sbjct: 299 TLMAQLFFARFLGFGGLVLALPLAVVTKTWLEQAVLK 335


>gi|154248206|ref|YP_001419164.1| hypothetical protein Xaut_4286 [Xanthobacter autotrophicus Py2]
 gi|154162291|gb|ABS69507.1| protein of unknown function UPF0118 [Xanthobacter autotrophicus
           Py2]
          Length = 343

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/350 (14%), Positives = 109/350 (31%), Gaps = 22/350 (6%)

Query: 13  RWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           R  +  ++ V+ YF   +      V +A+++      +   F         +        
Sbjct: 10  RVAMAILVAVAFYFAFRVVDVILQVFAAVLVSLALHALAEPFARLTRFPERYA------- 62

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
                + P+  L + G+      ++  +  +   + V    +++P    A E        
Sbjct: 63  -----VFPVALLVFGGIG-----LTLYLFGSTIQVQVTELFNELPAAWSAFEKRFHLEGM 112

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              L   +E    +   + +               L    +++   +F        +   
Sbjct: 113 SDDLLRRAEAAAPS--GETVISAVQGLTSNLFQVVLGSFLVVVGGIYFAASPDLYRRMFL 170

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           SL      A   +    + + +R       I  +  G++      + GVPS +AL +   
Sbjct: 171 SLWAEPERAAVARRLAAISEDLRHFLKAQLIAMVVVGVLTFIGLTIVGVPSALALALFAG 230

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +   +P   P+   A ++ + +   + +     L   I        + P L    + LP 
Sbjct: 231 LAEFVPMIGPVVAAAPAVLIALTLGMDSGLWTLLVFVIVQQSESNVITPLLQQRMVSLPP 290

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             T F +V      G LG+ +   L  L    +K       + + K   +
Sbjct: 291 AVTLFAVVAFGNVFGALGVLLATPLTVLAFAAFKAHGEPEAKPEAKPEQD 340


>gi|20091469|ref|NP_617544.1| transmembrane protein [Methanosarcina acetivorans C2A]
 gi|19916615|gb|AAM06024.1| transmembrane protein [Methanosarcina acetivorans C2A]
          Length = 335

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 114/326 (34%), Gaps = 17/326 (5%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +    +L  +  +     P+L A++IG    P+      ++   +     I TV  M   
Sbjct: 11  LAASTVLSVIATVSSITVPLLVAVVIGIVFRPLVDILEQRRVPRN-----IGTVLTMLFI 65

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            + +  LF   +    +  +++VL  + G       + +   +   ++  + L+   +  
Sbjct: 66  FLGVAALFVILIKGFIDQGAEIVLQLEAGW------ASLQAWLLQFQVKEETLNSISAAV 119

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
             S   L    I       S      +   + I F +  LFF  RDG  I   L     +
Sbjct: 120 SNSLPALGQGIIGLF----SSTFSSAIALLIGIYFSVFILFFILRDGPEIEVWLARQF-N 174

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L P     I   + + IR  F G  I A    +V+     +  VP   ++ ++    + I
Sbjct: 175 LKPGTGAAIVADISRSIRLYFRGTAITAAITAIVVVIPLIILKVPLIGSILILYFFTSFI 234

Query: 255 P-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P  GA I      I     G    A  + +   I    +   +  + +G  +K+  L  F
Sbjct: 235 PYIGAFIGGAFAVIIAFGSGGPETALIIAVAVTISNGALQNAINTWALGTTLKIHPLVVF 294

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIA 339
              +      G L + +   L A++ 
Sbjct: 295 LVTIASGVVGGFLAMILAVPLTAVVV 320


>gi|301300495|ref|ZP_07206693.1| putative membrane protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851895|gb|EFK79581.1| putative membrane protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 280

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 76/214 (35%), Gaps = 8/214 (3%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK- 202
            G+  I ++ +  G       ++ I  ++  FFF  D   + +   S  +  +  ++   
Sbjct: 62  GGMSIIVKYLANIGT----MGMTFIMALLLSFFFTIDKDDLFKFSKSFLKGPYSWFFNDV 117

Query: 203 --ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
              ++I             IIA+    +  +      +P   +L ++   M+MIP  G  
Sbjct: 118 YYFAKIFVNSFGVVLETQFIIALINTAITTTILACMKMPQLFSLALLIFFMSMIPVAGVI 177

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS   + +     G +     + +   +   +    L P L+    +LP   TF  L   
Sbjct: 178 ISAIPMMLIGYTVGGVRYIIYIIIMLCVVHALEAYVLNPKLMSSRTELPIFYTFVVLYVS 237

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               G+ GL +G  +   +  I       I+  +
Sbjct: 238 EHLFGMWGLIVGIPVFTFLLDILGVKSDHIRRER 271


>gi|325577684|ref|ZP_08147959.1| PerM family permease [Haemophilus parainfluenzae ATCC 33392]
 gi|325160429|gb|EGC72555.1| PerM family permease [Haemophilus parainfluenzae ATCC 33392]
          Length = 346

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 60/346 (17%), Positives = 131/346 (37%), Gaps = 23/346 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M + +   + ++    + I+   +        P L AL I     P+  +   +K     
Sbjct: 1   MEKNLNFNRTVVAMAALVIVFAGIKLAAEIVVPFLLALFIAIICSPVIKAMTQRKVPHGI 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            +A++  + ++  F   L  L    + E    +       Q+ + +   ++D+       
Sbjct: 61  AIALLFILILIVFFF--LAGLINSSVQEFTRSIP------QYKVLLSERVNDVMALAQKL 112

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +L          + I  E  ++      I  F SR  + F     ++  +I+A+ F   +
Sbjct: 113 KL---------PIVISREAIMEHFDPSVIMNFVSRLLLNFSGVVTNVFVLILAVIFMLLE 163

Query: 181 GFSISQQLDSLG---EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             ++  +L  +    EH   A    I RI+  VI S     T+I++  G        +AG
Sbjct: 164 APTMKHKLALVLSDNEHDVVAEEHHIDRILDGVI-SYLGVKTVISLLTGFTTWILLDVAG 222

Query: 238 VPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           V   +    ++ ++  IP  G+ I+   + +  L+         + +   +   ++   +
Sbjct: 223 VQYAILWATLSFLLNYIPNIGSIIAAVPIIVQALLLNGFGVGMGVTVGIIVLNIVIGNII 282

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            P ++G  + L  L  FF L+     +G +G+ +  P+ MA    +
Sbjct: 283 EPKMMGKTLGLSTLVVFFSLLFWGWLLGTVGMLLSVPLTMAFKITL 328


>gi|331090805|ref|ZP_08339652.1| hypothetical protein HMPREF9477_00295 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330399913|gb|EGG79572.1| hypothetical protein HMPREF9477_00295 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 420

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/392 (13%), Positives = 117/392 (29%), Gaps = 34/392 (8%)

Query: 2   RETMLNPQGIMRWMIMFIILVS-----LYFLK------------GFFAPVLSALIIGFTS 44
           R  M   Q  MR +  F+++++       FL+            G   P++  L+  +  
Sbjct: 13  RTQMKIKQYFMRGLTSFLVILAGIVCYFAFLRLDDIAGLLGKIGGILQPIILGLVFAYLL 72

Query: 45  WPIY--------SSFISKKEES-------STFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
            P+           F  K +          +     + +    + I+ L  +       +
Sbjct: 73  NPLVTIIENQVIKMFEKKAKNREKLRKVSRSIGIAGSLLVAFAVVILLLNMVIPELYRSI 132

Query: 90  KELVSKVVLANQHGIPVPRW--LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           ++L+  +     + I       + D         +        Q              + 
Sbjct: 133 RDLIMGLPHQINNAIDFLESEKIHDTAFSGTIKSVLENGAEAFQMWLKTDLLTRINQMMS 192

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
           F+            D  + +I  +  L    +      +   +L          +I+R  
Sbjct: 193 FVTVGVFSVVETLFDIAVGVIVSVYVLNSKEKFTGQCKKITYALLSRERANLMLQITRKS 252

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
            K+     +G  I +I  G++      +  +P  + + VI  +  ++P   P      S 
Sbjct: 253 HKIFGGFVIGKIIDSIIIGILCFIGLSILDIPYTLLVSVIVGVTNVVPFFGPYIGAIPSA 312

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            L++           ++  +        L P ++G    L      F ++ G    G +G
Sbjct: 313 ILILLSEPIKGIYFVIFILVLQQFDGNILGPKILGDSTGLSAFWVVFSILLGGGLFGFVG 372

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           + +G    A+   +    I    E K+    +
Sbjct: 373 MIMGVPTFAVFYYLVSMFIEQKLERKKLPKES 404


>gi|315928095|gb|EFV07414.1| outer membrane domain protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 153

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 11/149 (7%)

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIK 272
               M I+AI +G + G      G    + +GVI A+ ++IP  G  + +  VS+Y    
Sbjct: 4   VLYSMVIVAIFQGALFGLITIFYGYDG-ILMGVIFAVSSLIPAIGGALIYMPVSLYEFAS 62

Query: 273 GNIFNATCLFLWGAIEL-FIVDKTLRPF--------LVGGPIKLPFLPTFFGLVGGVRTM 323
            N+ +A  +F++  I + FI D  ++P         LV  P K+  L  F  ++ G+ T 
Sbjct: 63  NNLNSALVIFIYSVIVISFIADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTF 122

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           G  G+ +GP ++       +  ++   +N
Sbjct: 123 GFWGIILGPAILTFFVSTLRMYVILKDKN 151


>gi|300854561|ref|YP_003779545.1| hypothetical protein CLJU_c13750 [Clostridium ljungdahlii DSM
           13528]
 gi|300434676|gb|ADK14443.1| predicted membrane protein [Clostridium ljungdahlii DSM 13528]
          Length = 388

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/298 (15%), Positives = 95/298 (31%), Gaps = 15/298 (5%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAV-----IATVSVMCLFIVPLLFLFYYGML 87
           P + ALII +   P   +     E+            I  + V  L       +     +
Sbjct: 51  PFVMALIIVYLLKPGVENIEKFLEKKKILKKASHRRVIGIIGVYTLVAAIFAAVVSGIYI 110

Query: 88  EMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            +   +S           +  +L++  +     + +L + ++S P SL       +    
Sbjct: 111 MIGGKLSHNTSIANMASYLNEYLNNPTLSVSSVSEKLKSLNISIPTSLNDKIAQIVSYVQ 170

Query: 146 IDFIPRFASRFGMI--FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW--- 200
             F     +    I   +         II   +  +D        + +    F       
Sbjct: 171 SYFSASIGAMTNSIVAIVSNIALFFIAIILSIYLIQDSEYFVGLWNKIFNLAFGKSKTGS 230

Query: 201 --KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             K++  ++         G  + A   G++     +  G+   + +G+I  I  MIP   
Sbjct: 231 KLKEVLHVMDVTFYKYIRGQLLEASIVGVLSAIVLYFIGIDYALVIGIIAGICNMIPYIG 290

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIKLPFLPTFFG 315
            +  T +++ + + G         + G + +  V D  L P +VG  + L  + T   
Sbjct: 291 AVVGTVLAVIMALLGGQPITAVWAIIGMLAVRQVDDSLLAPKIVGNSVGLHPVFTMIA 348


>gi|229176114|ref|ZP_04303607.1| hypothetical protein bcere0006_51820 [Bacillus cereus MM3]
 gi|228607349|gb|EEK64678.1| hypothetical protein bcere0006_51820 [Bacillus cereus MM3]
          Length = 271

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 59/155 (38%), Gaps = 1/155 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +   +   +          +IA+   ++   A W+ G P  + L ++  ++ +IP  G  
Sbjct: 115 EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVI 174

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS   + +     G I     + +   +   +    L P  +     LP   TF  L+  
Sbjct: 175 ISLFPLCMIAYNIGGITYVVYILIIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFS 234

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
              +G+ GL IG  +   +  +   +   ++++ E
Sbjct: 235 EHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKDVE 269


>gi|226355646|ref|YP_002785386.1| hypothetical protein Deide_07700 [Deinococcus deserti VCD115]
 gi|226317636|gb|ACO45632.1| Conserved hypothetical protein [Deinococcus deserti VCD115]
          Length = 362

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/289 (11%), Positives = 98/289 (33%), Gaps = 2/289 (0%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L      V  A  + F   P+ +     +      + ++  + ++ +  V ++ +    
Sbjct: 23  LLASVLFTVFMAYGLAFLCNPLLTWLERHRVRRMIGVLLLLVLGILLVTAV-VMTVSSQI 81

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
              +  +        +  + +   L  +PG     E  T ++         +   L    
Sbjct: 82  NGMLNNVPELARSLKEILVNLLDRLDRLPGTEGLKETLTTYIDREVQDITQNAGPLAERL 141

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +   P          + +   + F++    +F  D   I + +  +    +     ++S 
Sbjct: 142 LSTGPTVMKTL-SNLVGWLGQVGFIVTLAMYFMIDYDGIGRSMLQILPRAWQPTALQLSE 200

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            V +   S   G  ++ I   ++  +   L  VP+ +A+G+++ ++ + P    +  + +
Sbjct: 201 DVSESFGSYLRGSLLLLIACVVLATTGLLLLKVPNPLAIGLLSGVINLFPYVGIVLASIL 260

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           +++  I         +     +   ++   L P ++G  ++L       
Sbjct: 261 AMFQAIPMGTTTILLVAGLYFLINQLLGNVLGPLIMGHTMRLSAAAILI 309


>gi|257066664|ref|YP_003152920.1| hypothetical protein Apre_1173 [Anaerococcus prevotii DSM 20548]
 gi|256798544|gb|ACV29199.1| protein of unknown function UPF0118 [Anaerococcus prevotii DSM
           20548]
          Length = 386

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/321 (14%), Positives = 112/321 (34%), Gaps = 5/321 (1%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            P++ AL+I     P               ++ +    ++ L +  L++   + + ++  
Sbjct: 36  MPIILALVIVGLLAPSIRKIDHILPIKHKAVSYLLGTILLLLLLFFLIWFVQFIVNQVSG 95

Query: 92  LVSKVVL-ANQHGIPVPRWLSDIPGGMWASELWTKH-LSHPQSLKILSETFLKTNGIDFI 149
           LV  ++   ++    V  W++D    +     +  + +             L+ N I+  
Sbjct: 96  LVGNIISNWDKIVSSVNTWINDANSQINLMPDYVSNTIRSGLKSLYEWLGSLQKNAINIT 155

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
             F   F     +    +I  ++A +    D  ++  +   L           I  +   
Sbjct: 156 FGFTQAFINTSNEIIFFVITFVVAFYIILGDMQNVYDKYHLLIPEKSKNNLSLIRTVFKN 215

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIY 268
              +       +A    +++    +  G    + + +I   + ++P  G  I     SI 
Sbjct: 216 STWNYIKSQLKLAFLCTIIMAIFLFFIGQQYFMPIALILGFVDLLPMIGPIIVLLPWSII 275

Query: 269 -LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            LLI  N   +  L +       +  + + P ++G    +  +     L  G++  G++G
Sbjct: 276 ELLIFDNTIKSLGLLIVLTAWTGL-RQVIAPKVIGSSADIHPILLVIALYAGLKLFGVMG 334

Query: 328 LFIGPVLMALIAVIWKESIMA 348
             + PV+   I  I++  I+ 
Sbjct: 335 AILLPVVFIFIVGIYRSGIID 355


>gi|261493722|ref|ZP_05990240.1| putative membrane protein [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261494544|ref|ZP_05991028.1| putative membrane protein [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261309793|gb|EEY11012.1| putative membrane protein [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261310612|gb|EEY11797.1| putative membrane protein [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 342

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/313 (14%), Positives = 108/313 (34%), Gaps = 18/313 (5%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L +L I     P+      +K     +LA+   + V  L    L  +    + E  
Sbjct: 20  VVPFLLSLFIAIICSPMIKFMTKRKV--PLWLAITILLIVFILGFSFLAGIINNTLQEFT 77

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
             + +  +     I V   L+              H+    S + +   F  ++ ++ + 
Sbjct: 78  NAIPQYKIQLSSRIQVILELAH-----------RWHIPLTLSQEEIMSKFDPSSIMNLVS 126

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
           +          +  +  + +I  L       + ++    +L      +  K+    V + 
Sbjct: 127 KLLMGLSGALSNIFVIFLVVIFMLLEMPVAKYKLA---LALSPDDDLSNEKEYINQVLEG 183

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
           +       T +++  G ++     + GV   +   ++T ++  +P  G+ ++   + I  
Sbjct: 184 VIGYLGVKTFVSLLTGGLVWILLEILGVEYAILWAILTFLLNYVPNIGSILAGIPIVIQA 243

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           L+           +   +   +V   L P L+G  + L  L  F  L+     +G +G+ 
Sbjct: 244 LVLNGFSIGLGTLIGIVVINMVVGNALEPKLMGKKLGLSTLVVFLSLLFWGWLLGTVGML 303

Query: 330 IG-PVLMALIAVI 341
           +  P+ MA    +
Sbjct: 304 LSVPLTMACKVAL 316


>gi|126735527|ref|ZP_01751272.1| hypothetical protein RCCS2_16666 [Roseobacter sp. CCS2]
 gi|126714714|gb|EBA11580.1| hypothetical protein RCCS2_16666 [Roseobacter sp. CCS2]
          Length = 380

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 104/278 (37%), Gaps = 14/278 (5%)

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG---------GMWASELWTKHLSHPQ 131
           +    +      +  VVL  Q   P  +++ D+P                L   + +   
Sbjct: 80  VISAALFTTILTLLIVVLLVQLSSPAAQFIEDLPSLMAEIQEKLASAGGALEAINEASEA 139

Query: 132 SLKILSETFLKTNGIDFIP--RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS-ISQQL 188
           + +++S+   +T  ++ +      +    +   +   I+F ++ LFF    G   +++ +
Sbjct: 140 AEEMMSDKAAETVAVEVVSDTGIVATIFSMAPGFLSRIMFALVLLFFLVASGDMFLTKTV 199

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            SL +        ++   +   +     G+ II  G G+ +  A  L G+PS + LG + 
Sbjct: 200 QSLNKFSDKKKAVEVLHTIEDRLGYYLGGIAIINAGLGVAVAVAMTLWGLPSAIILGFMA 259

Query: 249 AIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             +  +P    +     A ++  +     + A  +F    +   I  + + P  +   ++
Sbjct: 260 FGLNFVPFVGGLIGAMIAAAVAFVSLDGTWTAMGVFATYIMLTSIEGQFITPLAISRRMR 319

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L     F  +        ++G+ +   ++ ++ ++  E
Sbjct: 320 LNTTVVFLSVAFFAWIWSVMGMVVALPVLIVVKIVCDE 357


>gi|227878057|ref|ZP_03996046.1| permease [Lactobacillus crispatus JV-V01]
 gi|227862344|gb|EEJ69874.1| permease [Lactobacillus crispatus JV-V01]
          Length = 349

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 53/343 (15%), Positives = 114/343 (33%), Gaps = 27/343 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            N   + R++++ +I+  LY ++     VL   I  +    +         +  T L V 
Sbjct: 14  KNNIPLRRFVVLLLIIACLYEIRAMMNTVLLTFIFTYVIVHLIHLVQRYFPKIPTGLIVA 73

Query: 66  ATVSVMCLFIVPLLFL-FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            T  ++   +  ++ +     + ++ ++V  V+   +                  +   T
Sbjct: 74  VTYLIILALLYFVVTIYLPMLVGQISKMVKSVMAFYESN-----------ESSRLASHVT 122

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +++S  + +               +  FA      F    ++    +I  FF+  +   +
Sbjct: 123 RYISKGEIVTQ----------AKRVGTFALHTVTNFGSLTIATFMSLILSFFYTIELDRM 172

Query: 185 SQQ----LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
            +     + S          +   +               IAI    +         +P 
Sbjct: 173 IEFSKLFVKSGYFKWLFEDIRYFGKKFTNTFGVVLEAQFFIAICNTALTMIGLAFMHMPQ 232

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +ALG++  I++++P  G  IS   +SI     G I     +F+   I   I    L P 
Sbjct: 233 IIALGLMVFILSLVPVAGVIISLIPLSIIGYSVGGIRYVIYIFIMIMIIHAIEAYVLNPK 292

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            +    +LP   TF  L+      G  GL +G  +   +  + 
Sbjct: 293 FMASKTELPIFYTFLVLLVAEHFWGTWGLIVGVPIFTFLLDVL 335


>gi|15596204|ref|NP_249698.1| hypothetical protein PA1007 [Pseudomonas aeruginosa PAO1]
 gi|107100448|ref|ZP_01364366.1| hypothetical protein PaerPA_01001473 [Pseudomonas aeruginosa PACS2]
 gi|116048935|ref|YP_792264.1| hypothetical protein PA14_51300 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218893033|ref|YP_002441902.1| hypothetical protein PLES_43181 [Pseudomonas aeruginosa LESB58]
 gi|254239344|ref|ZP_04932667.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|254245280|ref|ZP_04938602.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|296390635|ref|ZP_06880110.1| hypothetical protein PaerPAb_20876 [Pseudomonas aeruginosa PAb1]
 gi|9946917|gb|AAG04396.1|AE004533_7 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|115584156|gb|ABJ10171.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126171275|gb|EAZ56786.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126198658|gb|EAZ62721.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218773261|emb|CAW29073.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
          Length = 357

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 121/360 (33%), Gaps = 22/360 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+    + + ++  +++ +    +    G  APVL+A++I F    +       +     
Sbjct: 9   MQRYFSDEEAVVLAIMLVLGFSVILAFGGMLAPVLAAMVIAFLIQGVVGMLERFRVPH-- 66

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI---PVPRWLSDIPGGM 117
                       LF V L++  + G+L +  +V   +L  Q       +PR L +    +
Sbjct: 67  ------------LFAVWLVYSLFLGLLALFLVVLLPLLWQQLFTLFNELPRMLGEWQSVL 114

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
                    L   + +    ET     G    +    +     + ++  + ++ + I +F
Sbjct: 115 LMLPERYPSLISEEQVLKAIETARGEFGQIGQWALTSSLASLPVVVNVMIYLVLVPILVF 174

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           FF +D                    K++   + + I +   G  I  +  G V   A+  
Sbjct: 175 FFLKDKKRFHTWFHRYLPRERGL-MKQVWAEMNQQIANYIRGKVIEIVITGAVTYIAFAY 233

Query: 236 AGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIF-NATCLFLWGAIELFIVD 293
            G+     L ++  +  ++P  GA +    V++    +         L +  AI   +  
Sbjct: 234 LGLNYAALLALLVGLSVVVPYIGAVVVSVPVAMIAFFQWGWSDQFIYLMVAHAIIQALDG 293

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             L P L    + L  +     ++      G  G+F    L  L+  +       + E  
Sbjct: 294 NVLVPLLFSEAVNLHPVAIICAVLLFGGLWGFWGVFFAIPLATLVKAVLDAWPKDLPETP 353


>gi|330883109|gb|EGH17258.1| permease [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 278

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 96/253 (37%), Gaps = 11/253 (4%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            +++  +  L     P L AL++ +   P+                   T+SV+ +F + 
Sbjct: 2   ALLVAFVVLLHTILTPFLVALLLAYMGDPLVDRLERAGLSR--------TLSVVAVFGLF 53

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLKI 135
            L L    ++ +  L  ++    +    +  WL    +P       L        +    
Sbjct: 54  TLVLMALLLVLVPMLAKQLFRLYELAPQILDWLQHSALPWVQAKFGLADGFWKFDKIKAA 113

Query: 136 LSETFLKT-NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           +SE   +  + +  +   A+   +  + +  +++ + +  F+  RD   ++ ++  L   
Sbjct: 114 ISEHMGQAGDIVSVVLSQATASSLALIGWLTNLVLIPVVCFYLLRDWDIMTGKIRGLLPR 173

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                  K++    +V+ +   G  ++ +G G++  +   L G+   + +GVI  + A++
Sbjct: 174 QREGQIVKLAGECHEVLGAFIRGQLLVMVGLGVIYAAGLMLVGLELGLLIGVIAGLAAIV 233

Query: 255 PGGAPISFTAVSI 267
           P    +     ++
Sbjct: 234 PYMGFVIGIGSAL 246


>gi|218440841|ref|YP_002379170.1| hypothetical protein PCC7424_3926 [Cyanothece sp. PCC 7424]
 gi|218173569|gb|ACK72302.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7424]
          Length = 340

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/334 (14%), Positives = 115/334 (34%), Gaps = 14/334 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            + + I L  ++ ++     + +A+++      +   F   K     FLA+I + +++ +
Sbjct: 9   IIALLISLYVVWQIRQLVLLIFTAIVLATALNQLVKQFQRWKLRR--FLAIITSFAILLI 66

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             +    L       +   + +     +        +  +   +    L    L    +L
Sbjct: 67  ISIIFALLI------IPPFIEQFQELVELLPTTLTQVEALINLIENRYLDFLELPDFNTL 120

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           +   +  +      F   F++       +  +  + + I    F  +  +       L  
Sbjct: 121 QQEIQPQIARIVRGFFDVFSTSI-----NIIVQAVLVFILTLMFLGNPQAYCSLFIRLFP 175

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
             +     +I  +  + + S  +G+ I  +   ++ G   W+  VP  +A  ++  ++  
Sbjct: 176 SFYRRRVGEILSLCEEALSSWTIGIIIEMVFITILSGIGLWILQVPLVLAHAILAGLLNF 235

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P       + + +    + A  + +   I   I    L P ++   + L    T 
Sbjct: 236 IPNLGPTLSVVFPVAIALLDAPWKAGAVLVLYIIIQQIESYWLTPTIMAKQVSLLPAVTL 295

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              +      G LGL I  + M +IA  W E I+
Sbjct: 296 MAQLFFASFFGFLGLLIA-LPMTVIAKTWLEEIL 328


>gi|228911276|ref|ZP_04075081.1| hypothetical protein bthur0013_54150 [Bacillus thuringiensis IBL
           200]
 gi|228968572|ref|ZP_04129558.1| hypothetical protein bthur0004_53450 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228791113|gb|EEM38729.1| hypothetical protein bthur0004_53450 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228848452|gb|EEM93301.1| hypothetical protein bthur0013_54150 [Bacillus thuringiensis IBL
           200]
          Length = 300

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 1/153 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +   +   +          +IA+   ++   A W+ G P  + L ++  ++ +IP  G  
Sbjct: 144 EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVI 203

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS   + +     G I     + +   +   +    L P  +     LP   TF  L+  
Sbjct: 204 ISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFS 263

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              +G+ GL IG  +   +  +   +   ++++
Sbjct: 264 EHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 296


>gi|42784615|ref|NP_981862.1| hypothetical protein BCE_5570 [Bacillus cereus ATCC 10987]
 gi|222098911|ref|YP_002532969.1| hypothetical protein BCQ_5280 [Bacillus cereus Q1]
 gi|229199563|ref|ZP_04326224.1| hypothetical protein bcere0001_50610 [Bacillus cereus m1293]
 gi|42740547|gb|AAS44470.1| membrane protein, putative [Bacillus cereus ATCC 10987]
 gi|221242970|gb|ACM15680.1| membrane protein, putative [Bacillus cereus Q1]
 gi|228583968|gb|EEK42125.1| hypothetical protein bcere0001_50610 [Bacillus cereus m1293]
 gi|324329386|gb|ADY24646.1| hypothetical protein YBT020_27120 [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 344

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 59/156 (37%), Gaps = 1/156 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +   +   +          +IA+   ++   A W+ G P  + L ++  ++ +IP  G  
Sbjct: 188 EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVI 247

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS   + +     G I     + +   +   +    L P  +     LP   TF  L+  
Sbjct: 248 ISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFS 307

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
              +G+ GL IG  +   +  +   +   ++++  K
Sbjct: 308 EHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKDAGK 343


>gi|311693811|gb|ADP96684.1| protein belonging to uncharacterized protein family UPF0118 [marine
           bacterium HP15]
          Length = 398

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/327 (13%), Positives = 110/327 (33%), Gaps = 9/327 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           IL +LY       P++ A++      P+      K        +++  + V+   +   L
Sbjct: 66  ILYTLYVAHQIVLPIILAVMTSLLLSPLVKKAYVKWRVPRMISSLVFVLLVLAGIVGITL 125

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            +    +  ++E+   +         + R ++ +       E   + LS  +  +  +  
Sbjct: 126 AVATPALKWVEEVPQGISRLLVGESEISRQIARVSESAEQVEKSVEELSESERQQPTTVV 185

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
               +  + +   A               F++++       G  + +             
Sbjct: 186 LQTDSWRNQLMTKARNGIAGLALALALTYFLLVS-------GDRLIKNFVRQLPIDQRKT 238

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGA 258
             +I+      I      + +  +  G   G   W  G+P     G++  +   IP  G 
Sbjct: 239 VLRITHDSQHQIAQYLGVLGLSNLAVGTTTGLICWAVGLPDPAVWGLVAGLARFIPYLGV 298

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAI-ELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            +S + ++I   I  + F    +   G +    +V   + P++ G  + +  +  F  + 
Sbjct: 299 ILSISMLTIVSAISLDEFWMMAIAPLGFLGLTTLVGFFIEPWIHGFRMAINPVIIFVSIF 358

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKE 344
                 G +G+ +   LM +I V+ K+
Sbjct: 359 FWGWLWGPVGVLLAVPLMTVIQVVLKQ 385


>gi|187925974|ref|YP_001892319.1| protein of unknown function UPF0118 [Ralstonia pickettii 12J]
 gi|241665458|ref|YP_002983817.1| hypothetical protein Rpic12D_3888 [Ralstonia pickettii 12D]
 gi|187727728|gb|ACD28892.1| protein of unknown function UPF0118 [Ralstonia pickettii 12J]
 gi|240867485|gb|ACS65145.1| protein of unknown function UPF0118 [Ralstonia pickettii 12D]
          Length = 439

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/323 (13%), Positives = 96/323 (29%), Gaps = 27/323 (8%)

Query: 14  WMIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            M++  I  +L FL   + F  P+   +++ F   P+               AVI     
Sbjct: 50  AMVLVAIGGTLVFLQWARVFLVPLTFGVVLAFALNPLVVRLQHWYVPRPVAAAVIVLGLW 109

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG----MWASELWTKH 126
           +         + +     +  +  +V LA +        + D   G    M       +H
Sbjct: 110 LA-----GGAVVFGMQDGVSAVAERVPLAAERMAESVDRVRDRLSGAVDKMRQVTTAVEH 164

Query: 127 LSHPQSLKILSETFLKTNGIDF-----------IPRFASRFGMIFLDYCLSIIFMIIALF 175
            +     K  S+   +                 +  F              ++ +   ++
Sbjct: 165 ATEGVPAKPPSQPARRPAAAAPPAPHDTLPVLPLREFVWTGSASLFALAGQLVVVSFLVY 224

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRI--VPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           F    G ++ ++             + +  +  +   I+ + L +    I  G++   A+
Sbjct: 225 FLLASGQALKRKWVRAVGRTLSEKKRAVRMMAGIGTQIQYSLLVLFASNIMLGILTAVAF 284

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF--I 291
            L G+      G+  A++  +P    +     S           A  L + G   +F  +
Sbjct: 285 ALLGMDDATVWGLAAAVLHFVPYLGSVVMVVASGIGAYLQMGTWADALIVAGTTLVFATL 344

Query: 292 VDKTLRPFLVGGPIKLPFLPTFF 314
           V   L  +L     KL     + 
Sbjct: 345 VGTLLMTWLQSRASKLDPCVVYI 367


>gi|255029473|ref|ZP_05301424.1| hypothetical protein LmonL_10968 [Listeria monocytogenes LO28]
          Length = 360

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 96/298 (32%), Gaps = 25/298 (8%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           +L   I  F    + +  + +       + ++    V     V ++      + ++ +LV
Sbjct: 36  ILLTFIFAFLVTRLENVILKRVRVPRKLIVIVLYSLVAVFLYVAIVHFLPILINQISQLV 95

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             +V    +  P    +     G        K+L                 G+DFI    
Sbjct: 96  DSLVKLYNN--PSDNTIVKWIVGFLKESNIQKYLQ---------------AGVDFIIASL 138

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK---ISRIVPKV 210
           S  G + L + L++I  +    FF  +   ++              +K+     +     
Sbjct: 139 SGIGSVGLSFFLALILSL----FFSLEKERVTSFTGQFMTSKVGFIFKEAAFFGKKFVST 194

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAVSIYL 269
                    +IA+    +   A +L   P  ++L ++  ++ +IP    I     + +  
Sbjct: 195 FGVVLEAQLMIALVNTFITTIALYLMDFPQLLSLSIMVFVLGLIPVAGVIISCIPLVLIA 254

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
              G   +   + +   I   I    L P L+     LP   TF  L+      G++G
Sbjct: 255 YSVGGFQDVVYILITVVIVHAIETYILNPKLMSSKTNLPVFYTFIILIFSETFFGVVG 312


>gi|186683898|ref|YP_001867094.1| hypothetical protein Npun_R3766 [Nostoc punctiforme PCC 73102]
 gi|186466350|gb|ACC82151.1| protein of unknown function UPF0118 [Nostoc punctiforme PCC 73102]
          Length = 367

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/342 (12%), Positives = 116/342 (33%), Gaps = 14/342 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           +++  + + +   + + +A+++ F   +PI   F+ ++            +  + + +  
Sbjct: 26  LLIQVVQYFQPLISIIAAAILLAFVLNYPIQ--FLQEQGVKRNLAIAGVLLLTLVILVAL 83

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
            + L    + ++ EL + +      G    +   D    +   +L          +    
Sbjct: 84  GITLVPLIIQQLVELANILPSWIDSGTQQLQTFQD--WALSQQQLPINLSGLFTQVLERL 141

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              L++     +       G++       ++ + + L     +G  +   +     H   
Sbjct: 142 SNQLQSFTGRILGFAVDTIGIVLNVLLAVVLTVYLIL-----NGERLWDGIFQWFPHNIG 196

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
              +++ R   +   + F+G   +    G+ +  A+    VP  +  G+   + ++ P G
Sbjct: 197 LRLRELLR---EDFHNYFIGQATLGAVLGVTITLAFLTLRVPLALLFGIGIGLFSLFPFG 253

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
                  VS+ + ++ N +    +         +    + P ++G    L  +     L+
Sbjct: 254 TGFGIAIVSLLVALQ-NFWLGVEVLGIAVAIDQVNSNFVAPRILGNLTGLNPVWVVISLL 312

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            G +  G+LGL I   + + I               + I S 
Sbjct: 313 LGAKLGGVLGLLIAIPIASFIKDTTDSWRAGEFNKIDDIVSE 354


>gi|45442060|ref|NP_993599.1| putative transport protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|51596809|ref|YP_071000.1| transport protein [Yersinia pseudotuberculosis IP 32953]
 gi|108807943|ref|YP_651859.1| putative transport protein [Yersinia pestis Antiqua]
 gi|108812209|ref|YP_647976.1| putative transport protein [Yersinia pestis Nepal516]
 gi|145599147|ref|YP_001163223.1| putative transport protein [Yersinia pestis Pestoides F]
 gi|149365641|ref|ZP_01887676.1| putative membrane protein [Yersinia pestis CA88-4125]
 gi|153947832|ref|YP_001400538.1| transport protein [Yersinia pseudotuberculosis IP 31758]
 gi|161484825|ref|NP_669056.2| putative transport protein [Yersinia pestis KIM 10]
 gi|162420598|ref|YP_001606204.1| putative transport protein [Yersinia pestis Angola]
 gi|165927500|ref|ZP_02223332.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165939511|ref|ZP_02228057.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166008510|ref|ZP_02229408.1| putative membrane protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166214549|ref|ZP_02240584.1| putative membrane protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167402381|ref|ZP_02307844.1| putative membrane protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167422322|ref|ZP_02314075.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167427024|ref|ZP_02318777.1| putative membrane protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167469921|ref|ZP_02334625.1| hypothetical protein YpesF_19009 [Yersinia pestis FV-1]
 gi|170023910|ref|YP_001720415.1| putative transport protein [Yersinia pseudotuberculosis YPIII]
 gi|186895883|ref|YP_001872995.1| putative transport protein [Yersinia pseudotuberculosis PB1/+]
 gi|218929539|ref|YP_002347414.1| putative transport protein [Yersinia pestis CO92]
 gi|229837981|ref|ZP_04458140.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229895178|ref|ZP_04510353.1| putative membrane protein [Yersinia pestis Pestoides A]
 gi|229898543|ref|ZP_04513688.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229902539|ref|ZP_04517656.1| putative membrane protein [Yersinia pestis Nepal516]
 gi|270490288|ref|ZP_06207362.1| AI-2 transport family protein [Yersinia pestis KIM D27]
 gi|294504213|ref|YP_003568275.1| hypothetical protein YPZ3_2103 [Yersinia pestis Z176003]
 gi|45436923|gb|AAS62476.1| putative membrane protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|51590091|emb|CAH21725.1| putative permease, PerM family [Yersinia pseudotuberculosis IP
           32953]
 gi|108775857|gb|ABG18376.1| membrane protein [Yersinia pestis Nepal516]
 gi|108779856|gb|ABG13914.1| putative membrane protein [Yersinia pestis Antiqua]
 gi|115348150|emb|CAL21078.1| putative membrane protein [Yersinia pestis CO92]
 gi|145210843|gb|ABP40250.1| membrane protein [Yersinia pestis Pestoides F]
 gi|149292054|gb|EDM42128.1| putative membrane protein [Yersinia pestis CA88-4125]
 gi|152959327|gb|ABS46788.1| putative membrane protein [Yersinia pseudotuberculosis IP 31758]
 gi|162353413|gb|ABX87361.1| putative membrane protein [Yersinia pestis Angola]
 gi|165912560|gb|EDR31191.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165920555|gb|EDR37832.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165992892|gb|EDR45193.1| putative membrane protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166204251|gb|EDR48731.1| putative membrane protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166958828|gb|EDR55849.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167048214|gb|EDR59622.1| putative membrane protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167054003|gb|EDR63831.1| putative membrane protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169750444|gb|ACA67962.1| protein of unknown function UPF0118 [Yersinia pseudotuberculosis
           YPIII]
 gi|186698909|gb|ACC89538.1| protein of unknown function UPF0118 [Yersinia pseudotuberculosis
           PB1/+]
 gi|229679986|gb|EEO76085.1| putative membrane protein [Yersinia pestis Nepal516]
 gi|229688091|gb|EEO80162.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229694347|gb|EEO84394.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229701812|gb|EEO89836.1| putative membrane protein [Yersinia pestis Pestoides A]
 gi|262362330|gb|ACY59051.1| hypothetical protein YPD4_2144 [Yersinia pestis D106004]
 gi|262366361|gb|ACY62918.1| hypothetical protein YPD8_2243 [Yersinia pestis D182038]
 gi|270338792|gb|EFA49569.1| AI-2 transport family protein [Yersinia pestis KIM D27]
 gi|294354672|gb|ADE65013.1| hypothetical protein YPZ3_2103 [Yersinia pestis Z176003]
 gi|320014721|gb|ADV98292.1| putative membrane protein [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 352

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 118/335 (35%), Gaps = 22/335 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +I+  +        P L A+ +     P+    + + +   T   ++    ++ L ++
Sbjct: 20  LVVIMAGIKAASPIVVPFLLAIFLAIVLNPL-VKLLERIKIPRTLAVILLVTIIILLMVL 78

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
               L                  N+    +P++   +   M   + +  H +   S+  +
Sbjct: 79  LFGRLGSSL--------------NEFARSLPQYRGMMLEKMRDLQEFALHFNIEFSVDDI 124

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +    +  ++F+ R  S          L ++ ++  LF   R  + +    D+      
Sbjct: 125 MKYVDPSMAMNFVTRLLSHLSGAMTSTFLLLMTVVFMLFEVERMPYKVQLMFDN------ 178

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
           P     I +     +    +  TII+I  G+V+       GV      G++  ++  IP 
Sbjct: 179 PEKGNAILKRALNGVTHYLVIKTIISIATGIVIWLFLAAMGVRFAFLWGLLAFVLNYIPN 238

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ ++     I  L+     +A  +     +   I    + P ++G  + L  L  F  
Sbjct: 239 IGSVLAAIPPIIQALLFNGFADAFAVTGGYILINLIGGNIIDPRMMGRGLGLSTLVVFLS 298

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+     +G +G+ +   L  +  ++ + +    +
Sbjct: 299 LIFWGWLLGPVGMLLSVPLTIIAKIVLELTPAGYR 333


>gi|228988666|ref|ZP_04148752.1| hypothetical protein bthur0001_53210 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228771117|gb|EEM19597.1| hypothetical protein bthur0001_53210 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 344

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 1/153 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +   +   +          +IA+   ++   A W+ G P  + L ++  ++ +IP  G  
Sbjct: 188 EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVI 247

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS   + +     G I     + +   +   +    L P  +     LP   TF  L+  
Sbjct: 248 ISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFS 307

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              +G+ GL IG  +   +  +   +   ++++
Sbjct: 308 EHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 340


>gi|89054550|ref|YP_510001.1| hypothetical protein Jann_2059 [Jannaschia sp. CCS1]
 gi|88864099|gb|ABD54976.1| protein of unknown function UPF0118 [Jannaschia sp. CCS1]
          Length = 382

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 107/319 (33%), Gaps = 12/319 (3%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
             F  PV +A +  F        ++++        A++    +     + L+ L      
Sbjct: 47  SDFLIPVTAACLGYFVLNRP-RRWLARIGIPPFVSALLFVAILTLFIGLLLVQLSAPAAQ 105

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            +++L S +             L  I     A+E   + ++      +  E    T    
Sbjct: 106 FIEDLPSLIEQIQDKLQDAGGTLEAINDASVAAE---EIVADQDQETVSVEVVSDTGFAA 162

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            +   A  F    +   L + F++ +   F+       + + S           ++   +
Sbjct: 163 TLFSMAPGFLSRIMFALLLLFFLVASGDMFF------IKTVQSFDRFRDKRRAVEVMHAI 216

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS--FTAV 265
              +     G+T+I  G G+ +  A  L G+P  +  G +   +  +P    +     A 
Sbjct: 217 EDRLGYYLGGITVINFGLGIAISIAMALWGLPGALVFGFMAFCLNFVPFLGGLLGASIAA 276

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++  +     + A  +F    I   I  + + P L+   ++L     F  +        +
Sbjct: 277 AVAFVSLDGTWVAAGVFATYIILTSIEGQFVTPMLISRRMRLNTTVVFLTVAFFAWIWSV 336

Query: 326 LGLFIGPVLMALIAVIWKE 344
           +G+ +   ++ +I +   E
Sbjct: 337 MGMVVALPILIVIKIACDE 355


>gi|323527960|ref|YP_004230112.1| hypothetical protein BC1001_3639 [Burkholderia sp. CCGE1001]
 gi|323384962|gb|ADX57052.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1001]
          Length = 690

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/339 (14%), Positives = 106/339 (31%), Gaps = 24/339 (7%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           +  LYF +    P+  A+++ F   P+  S    K       +V A V +    I  L  
Sbjct: 35  VACLYFARAVLIPMTLAILLSFLVAPLVKSLGRLKLGH--VASVFAAVVMSVSVIGVLGA 92

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLS--DIPGGMWASELWTKHLSHPQSLKILSE 138
           +    + E+   + +     +  +     L+   +     A+    +  +   S      
Sbjct: 93  VITMQLTELAAGMPRYQATIERKMEAAHTLTVGKLDRFAKAAGQALQRATVEPSQPEPRH 152

Query: 139 TFLKTNGIDFIPRFA---------SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                +G                        L   +S +     +F            L 
Sbjct: 153 DASSADGRAPAAVPVEVREPVPTPLEVARRVLSPAISPLETAFIVFVVMVVILLQRDDLR 212

Query: 190 SLGEHLFPAYWKK----ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                LF +        +     + +   F+    +  G G+ +G+  +  GVPS +  G
Sbjct: 213 DRAIRLFGSRDLHRTTMVMDEAARRLSRYFVSQLGLNAGLGVAIGAGLFFIGVPSPILWG 272

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD----KTLRPFLV 301
           ++ A++ ++P      + A ++   +   +     + +W       V+    + + P L 
Sbjct: 273 ILAALLRLVPYVG--IWIAGALATALAAAVSPGWDMAVWSIALFVTVELLVGQVVEPLLY 330

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIA 339
           G    L         +      G +GL +  P+ + L+ 
Sbjct: 331 GRSTGLSPFSVVVAAIFWSWIWGPIGLILSTPLTLCLLV 369


>gi|163850937|ref|YP_001638980.1| hypothetical protein Mext_1508 [Methylobacterium extorquens PA1]
 gi|163662542|gb|ABY29909.1| protein of unknown function UPF0118 [Methylobacterium extorquens
           PA1]
          Length = 401

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 65/202 (32%)

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
           A+   +   +   +++ ++        D  S       L          ++     + +R
Sbjct: 199 AATVVIALFNALGNVLVIVFLGVAIAADPGSYRDGALRLVPPRHREKGARVLDGSGETLR 258

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
               G  +      ++  +     G+   + LG+   ++A +P   P+    V +   + 
Sbjct: 259 HWLFGQLVTMAAIFVLTWAGLSFLGIGGALILGLQAGLLAFVPTIGPLIAGLVIVLSSLA 318

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
             +                    L PF+    + LP    F G +      GL G+ +  
Sbjct: 319 SGLNGLLGALGVYLAVQAAESYGLTPFIQRRALDLPAATIFAGQLLLGVLFGLWGVALAL 378

Query: 333 VLMALIAVIWKESIMAIKENKE 354
            L+A+I V+ +E  +      E
Sbjct: 379 PLVAVIKVLLEELYIEDGAEAE 400


>gi|328478802|gb|EGF48377.1| permease [Lactobacillus rhamnosus MTCC 5462]
          Length = 310

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 75/204 (36%), Gaps = 8/204 (3%)

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
             G+  +  +A   G + L   LS I      FFF  +  S+        +  F  Y+K 
Sbjct: 97  KTGLSTVLEYAGNIGAMGLTLVLSFILS----FFFTIELDSLPAFGQLFLDSPFGWYFKD 152

Query: 203 ISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GA 258
           +     K I +          IA+   ++         +P+  +L ++  ++++IP  GA
Sbjct: 153 LRYFALKFINTFGVVMEAQIFIAVVNTVITTITLLFMKMPNIPSLAIMVFLLSLIPVAGA 212

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            IS   ++I     G   +   + +  A    +    L P  +    +LP   TF  L+ 
Sbjct: 213 IISLIPLTIIGYTVGGWQDVITILIMIAAIHVLEAYVLNPKFMSSRTQLPVFFTFVVLLV 272

Query: 319 GVRTMGLLGLFIGPVLMALIAVIW 342
             R  G  GL +G  +      + 
Sbjct: 273 AERLFGTWGLIVGIPIFTFFLDVL 296


>gi|228924182|ref|ZP_04087457.1| hypothetical protein bthur0011_51540 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228835474|gb|EEM80840.1| hypothetical protein bthur0011_51540 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 344

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 58/153 (37%), Gaps = 1/153 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +   +   +          +IA+   ++   A W+ G P  + L ++  ++ +IP  G  
Sbjct: 188 EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVI 247

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS   + +     G I     + +   +   +    L P  +     LP   TF  L+  
Sbjct: 248 ISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFS 307

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              +G+ GL IG  +   +  +   +   I+++
Sbjct: 308 EHFLGVWGLIIGIPIFIFLLDVLDVTSDEIEKD 340


>gi|238754368|ref|ZP_04615724.1| AI-2 transport protein tqsA [Yersinia ruckeri ATCC 29473]
 gi|238707401|gb|EEP99762.1| AI-2 transport protein tqsA [Yersinia ruckeri ATCC 29473]
          Length = 355

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/315 (13%), Positives = 108/315 (34%), Gaps = 22/315 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +I+  +        P L A+ +     P+    + K +   T   V+    ++ L   
Sbjct: 25  LVVIMAGIKAASPIVVPFLLAIFLSIVLNPV-VRLLQKIKIPRTLAIVLLVTMIILLMSF 83

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +  L                  N+    +P++   +   +     + +  +   S+  +
Sbjct: 84  VVGMLGSSL--------------NEFARSLPQYRGVMLEKIRELHEFAERFNINMSVDDV 129

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +       ++F+ R  S          L ++ ++  LF   R  + +    D       
Sbjct: 130 MKYVDPGAAMNFVTRLISHLSGAMTGIFLLLMTVVFMLFEVERLPYKLQLMFDD------ 183

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
           P    ++ +   K +    +  T+I++  G+V+        V      G++  ++  IP 
Sbjct: 184 PIKGIEVLQRAVKGVTHYLVIKTVISVATGIVVWLFLASMDVRFAFIWGLLAFLLNYIPN 243

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ ++     I  L+     +A  +     +   I    + P ++G  + L  L  F  
Sbjct: 244 IGSVLAAIPPIIQALLFNGFADALVVAGGFILINLIGGNIIDPRIMGRGLGLSTLVVFLS 303

Query: 316 LVGGVRTMGLLGLFI 330
           L+     +G +G+ +
Sbjct: 304 LIFWGWLLGPIGMLL 318


>gi|296161795|ref|ZP_06844597.1| protein of unknown function UPF0118 [Burkholderia sp. Ch1-1]
 gi|295887959|gb|EFG67775.1| protein of unknown function UPF0118 [Burkholderia sp. Ch1-1]
          Length = 358

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/319 (15%), Positives = 112/319 (35%), Gaps = 8/319 (2%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
                P L   I+ +   P  +  + ++       A++  +    L  + +L +      
Sbjct: 33  SPVLTPFLLGAILAYILQPGVAWMVRRRVPR-GLAALLMMLLFTLLMTLLVLLVLAVVQK 91

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           E  +L  +V +   H   V  WL   P         +   +  + L +            
Sbjct: 92  EGPQLRQQVPVLFAH---VNAWLQ--PKLALLGLADSLDFASIRDLVMGQLEGSAQTVAL 146

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
           +        G + +    +++ + + LF+   D   +  ++ ++    +     +++  +
Sbjct: 147 YAWTSIRTSGNVMITVVGNVVMVPLVLFYLLYDWNRMLARMQTVVPRRWLDKTLQLAHDM 206

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAV 265
            +++     G  ++          A  LA     + +G+ T +   IP  G A     A+
Sbjct: 207 DQMLSQYLRGQLLVMGVLAAYYAIALSLARFEIALPVGIFTGLAVFIPYIGFATGLALAL 266

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
              LL  G+ +    + L   +   +    L P LVG  I L  L   F L+   +  G 
Sbjct: 267 LAALLQFGDWYGFGAVALIYGVGQILESFFLTPRLVGERIGLHPLAVIFALLAFGQLFGF 326

Query: 326 LGLFIGPVLMALIAVIWKE 344
            G+ +   + A+++V  +E
Sbjct: 327 FGVLLALPVSAILSVATRE 345


>gi|260222993|emb|CBA33114.1| hypothetical protein Csp_B17420 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 314

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 75/237 (31%), Gaps = 9/237 (3%)

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIA 173
              ++   K      S+K     +L  N  D      +     G +      + I + +A
Sbjct: 65  PLLAQWGIKLNLDVASIKGFVMKYLNANVEDAFGSVLASVKLGGSVAFALIGNAILIPVA 124

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           LF+   D      QL  +             R   +V+     G  ++ +          
Sbjct: 125 LFYMLMDWSRFMGQLRQMVPPRLRGPTDSFLRESDEVLGQYLRGQLLVMVILAAAYSIGL 184

Query: 234 WLAGVPSHVALGVITAIMAMIP---GGAPISFTAVSIYLLIKGNIFNA---TCLFLWGAI 287
            L G+   + +G+ T +   +P    G  +     +  L    +         + +   +
Sbjct: 185 ALFGLDLALPIGIFTGLAIFVPYLGFGVGLVLALFAGLLEFSSSHGIGYPLVMVAVVYGL 244

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              +    L P LVG  I L  L   F L+   +  G +G+ +     A++ V  + 
Sbjct: 245 GQVVESFLLTPRLVGERIGLHPLAVIFALLAFGQLFGFVGVLVALPASAVLLVAIRR 301


>gi|224585374|ref|YP_002639173.1| hypothetical protein SPC_3651 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224469902|gb|ACN47732.1| hypothetical protein SPC_3651 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|323131941|gb|ADX19371.1| putative permease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 385

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/321 (14%), Positives = 114/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + IIL  ++        +L AL       P+ + FI +  +       +A   V
Sbjct: 50  LLKLASLVIILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVKRP-----LAITIV 104

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L       + E ++ +   ++                    L  + L   
Sbjct: 105 VVVMLIVLTALVGVLAASLNEFIAMLPKYSKELT--------------RKVLHLQELMPF 150

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    D I  F +           SI+ +++ + F   +   +  +L  
Sbjct: 151 LNLHMSPERMLRGMDSDKIMLFTTTLMTGVSGAMASIVLLVMTVVFMLFEVRHVPYKL-R 209

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G ++     L G+   +  GV+  +
Sbjct: 210 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGAIIWLGLALMGIQFALMWGVLAFL 268

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  G+ IS     I  L+    +    +     +   ++   + P ++G  + +  
Sbjct: 269 LNYVPNIGSVISAVPPMIQALLFNGFYECVLVGALFLVVHMVIGNIMEPRMMGHRLGMST 328

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           L  F  L+     +G +G+ +
Sbjct: 329 LVVFLSLLVWGWLLGPVGMLL 349


>gi|268318605|ref|YP_003292261.1| hypothetical protein FI9785_106 [Lactobacillus johnsonii FI9785]
 gi|262396980|emb|CAX65994.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus
           johnsonii FI9785]
          Length = 349

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 53/346 (15%), Positives = 114/346 (32%), Gaps = 19/346 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST-FLAVIATV 68
            + R + + +I++ LY  +     +L   I  +    +      K        + V+A +
Sbjct: 13  TVHRLVALCLIILVLYAARSMMNTILLTFIFTYLIVHLIRFTQKKMPRLPAQVIVVLAYL 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ L    +       + ++ ++   ++   Q                W S   + ++S
Sbjct: 73  LVIALIYFAITIYVPILIKQIIKMSHSLIKFYQSD-----------DMNWVSRYLSHYIS 121

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           + +            +G+  +    + FG + + + +S+I                   L
Sbjct: 122 NSEITTQ------AKHGVTILVHALTNFGTLTIAFFMSLIMSFFYTIELNSMTEFSHTFL 175

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S                              IA+    +      +  +P  +ALG++ 
Sbjct: 176 QSRHLSWLFEDVAYFGSKFVNTFGVVLEAQFFIALCNTAMTIICLIIMRMPQIIALGLMV 235

Query: 249 AIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I+++IP  G  IS   +S+     G +     +F+   I   I    L P  +    +L
Sbjct: 236 FILSLIPVAGVIISLIPLSLVAYSVGGLRYVIYIFIVIMIIHAIEAYILNPKFMASKTEL 295

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           P   TF  L+ G   +G  GL +G  +   +  I     +  K+ +
Sbjct: 296 PIFYTFVVLLVGEHFLGTWGLIVGVPIFTFLLDILGVKSVKKKKPQ 341


>gi|228903918|ref|ZP_04068032.1| hypothetical protein bthur0014_50720 [Bacillus thuringiensis IBL
           4222]
 gi|228855708|gb|EEN00254.1| hypothetical protein bthur0014_50720 [Bacillus thuringiensis IBL
           4222]
          Length = 300

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 1/153 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +   +   +          +IA+   ++   A W+ G P  + L ++  ++ +IP  G  
Sbjct: 144 EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVI 203

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS   + +     G I     + +   +   +    L P  +     LP   TF  L+  
Sbjct: 204 ISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFS 263

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              +G+ GL IG  +   +  +   +   ++++
Sbjct: 264 EHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 296


>gi|33861484|ref|NP_893045.1| hypothetical protein PMM0927 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33634061|emb|CAE19386.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 347

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/347 (12%), Positives = 116/347 (33%), Gaps = 5/347 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N     ++ ++ I  + ++ L+ F   ++ +L+I      +     +  +       +I
Sbjct: 1   MNRSFYFKFSVVIISFLLVWTLRDFILLIICSLVISNVVSNLCYQIQTILKLPRFVSLLI 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKV----VLANQHGIPVPRWLSDIPGGMWASE 121
             V +  +     + +    + E  E++  +       N+         +D+  G  +  
Sbjct: 61  VLVGISFMIFAISIIVLPPFIREFNEILIDIPNGLSRVNELVNSNLNKFNDLIYGKESER 120

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +          + I     +     +                 + +IF+++  F    + 
Sbjct: 121 IVNIFDLVNDVVPIPDGATIAKAIQESFINII-NLAGNLGSGFIRVIFVLVVSFMISIEP 179

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            +  + +  +   ++   ++ I       + +    + I +I  GL+      +  V   
Sbjct: 180 KAYKEGVLFMIPKVYRNKFRIILDKCNIALTNWTFSIVISSISVGLLSLIVLSILDVKYV 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           V+  +I  I+ +IP   P+      I + +  N +    +F    +   I    + P ++
Sbjct: 240 VSNAIIAMILNIIPNIGPVLSGIFPISIALLDNFWKPVAVFGAYIVIQNIESYIIMPSIL 299

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
                L    T     G     G LGL +   ++ +  V+ KE I  
Sbjct: 300 KKKTNLLPGLTLISQFGFTFIFGPLGLVLSLPIVVVTQVLIKELIND 346


>gi|90423372|ref|YP_531742.1| hypothetical protein RPC_1866 [Rhodopseudomonas palustris BisB18]
 gi|90105386|gb|ABD87423.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           BisB18]
          Length = 689

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 116/358 (32%), Gaps = 29/358 (8%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +   ++  II+++LY  +  F PV  A+++ F   P  +             AV+  V +
Sbjct: 54  VALAILAVIIVMALYLGREIFVPVALAILLSFVLAPPVAWLQRAHVPRGG--AVVGVVLL 111

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS-----ELWTK 125
               I  +  L    +  + E + +     Q  I   R  + + GG         +  +K
Sbjct: 112 AFAIIFGIGSLVATQLAHLAEELPRYETTIQSKIQSLRG-ATVGGGTLERAADMLQDLSK 170

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPR---------------FASRFGMIFLDYCLSIIFM 170
            L  P   +      L  +                               +    +   +
Sbjct: 171 ELDRPNGTRAAPSPRLGGDTQRPAVAPVPVEVRQPDPGALESIRSLIAPLVSPLATTGII 230

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           +I + F       +  +L  L                   +   FL   ++  G G+++G
Sbjct: 231 VIFVIFILIQREDLRNRLIRLAGSHDLQRTTAALDDAAARLSRLFLNQLLVNAGFGVLIG 290

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
           +  WL G+PS +  G++  ++  +P    +   A  + L    +   +  +  W A   F
Sbjct: 291 TGLWLIGIPSAILWGILAMVLRFVPYIGSVIAAAFPLALAAAVDPGWS--MLAWTAALFF 348

Query: 291 IVD----KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           +++    + + P L G    L  +             G +GL +   L   + V+ + 
Sbjct: 349 VIEPAIAQVVEPLLYGRSTGLSAVAVVVAATFWTALWGPIGLVLATPLTVCLVVLGRH 406


>gi|218528263|ref|YP_002419079.1| hypothetical protein Mchl_0209 [Methylobacterium chloromethanicum
           CM4]
 gi|218520566|gb|ACK81151.1| protein of unknown function UPF0118 [Methylobacterium
           chloromethanicum CM4]
          Length = 651

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/351 (11%), Positives = 107/351 (30%), Gaps = 16/351 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G++   +  +++ +LYF +  F P++ A+++ F   P+ +     +        ++A +
Sbjct: 23  RGLLTLAVGVVLVTALYFGREVFIPLVLAVLLSFVLAPVVNLLRRLRLG-RVPSVIVAVL 81

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-WL---SDIPGGMWASELWT 124
             + +       +         +L        +    +   WL   S I           
Sbjct: 82  LALAVIGGIGAVIGTQVAGLAGDLPQYQATVQKKFAGLQAGWLGNASRIFQRFNHQVHNA 141

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIP---------RFASRFGMIFLDYCLSIIFMIIALF 175
              +        +     T     +            A +     ++   ++  +++ + 
Sbjct: 142 TQKADAAGTAASTGPAGDTPKAQLVKVQEPDPSPFTLAEKVLGPIVEPLTTVGIVLVVVV 201

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F       +  ++  L                 + + + FL    +    G ++G   W 
Sbjct: 202 FLLLQREDLRNRMIRLFGSGDLHRTTMAMDDAARRLGTYFLAQLGMNATFGFIIGLGLWF 261

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL--FLWGAIELFIVD 293
            GVP+ +  GV +A+M  +P           + L    +   +  +   +   +   +  
Sbjct: 262 IGVPNPLLWGVFSALMRFVPYIGAFLSALFPLALAAAVDPGWSMVIATAILFLVVEPLFG 321

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             + P L G    L         +      G +GL +       + V+ + 
Sbjct: 322 HVIEPLLYGHSTGLSPFAVIVSTLFWGFLWGPIGLILATPFTVCLVVLGRH 372


>gi|228990972|ref|ZP_04150935.1| UPF0118 membrane protein [Bacillus pseudomycoides DSM 12442]
 gi|228997059|ref|ZP_04156690.1| UPF0118 membrane protein [Bacillus mycoides Rock3-17]
 gi|229004715|ref|ZP_04162451.1| UPF0118 membrane protein [Bacillus mycoides Rock1-4]
 gi|228756508|gb|EEM05817.1| UPF0118 membrane protein [Bacillus mycoides Rock1-4]
 gi|228762684|gb|EEM11600.1| UPF0118 membrane protein [Bacillus mycoides Rock3-17]
 gi|228768752|gb|EEM17352.1| UPF0118 membrane protein [Bacillus pseudomycoides DSM 12442]
          Length = 344

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 1/149 (0%)

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG- 256
                  +   +          +IA+   ++   A    G P  + L V+  ++ +IP  
Sbjct: 186 EEIAYFGQKFARSFGKVIEAQFLIAVVNCILSVIALVFLGFPQLLVLAVMIFLLGLIPVA 245

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           G  IS   + I     G I     + ++ A+   I    L P  +     LP   TF  L
Sbjct: 246 GVIISLFPLCIIAYNIGGIAYVVYILIFIAVIHAIESYFLNPKFMSAKTNLPIFYTFMVL 305

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +     +G+ GL IG  +   +  + +  
Sbjct: 306 IFSEHFLGIWGLIIGIPIFIFLLDVLEVY 334


>gi|158321393|ref|YP_001513900.1| sporulation integral membrane protein YtvI [Alkaliphilus oremlandii
           OhILAs]
 gi|158141592|gb|ABW19904.1| Sporulation integral membrane protein YtvI [Alkaliphilus oremlandii
           OhILAs]
          Length = 359

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 55/339 (16%), Positives = 115/339 (33%), Gaps = 9/339 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             I   +I+ +I ++   + G+  P +    I +   P+        +  +  +++    
Sbjct: 14  NTIYTAIIIGLIYLAFKHVLGWVMPFIIGFFIAYLLKPMADFIERSTKIKNKSVSIFVIS 73

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI-----PVPRWLSDIPGGMWASELW 123
               + I    FL       + E ++         I         W+  I      S   
Sbjct: 74  FFYVVVIGVASFLVINLWRLIYEFINLFPTLYIDSIEPMIAAANDWI--ISFINNLSPEV 131

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              +S      +   T + ++    +    +        Y ++++F II       D  +
Sbjct: 132 AALISDVFDNVLSMVTQVVSSLSKIVLFSITGIAQKIPIYFITLLFSIICSVLITMDYDN 191

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +S  L+        +    + +I+   I        I+     + +   + + G+   + 
Sbjct: 192 VSAFLNRQIPKSIRSILSDVKKILVDTIFKMAKAYFILLFIAFIEMCIGFMILGIDHAIP 251

Query: 244 LGVITAIM-AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           +  I AI+  +   G         IY +I G       L +   I  +I+  TL P +VG
Sbjct: 252 IASIIAILDIIPLIGIGGILIPWGIYEIIIGQSTVGIGLLIIYLIS-YILRNTLEPKIVG 310

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             I L  L TF  +  G +T G +G    P++  +I  +
Sbjct: 311 KQIGLNSLVTFVSMFVGFKTFGFIGFMTAPIVAIIIKQL 349


>gi|47568556|ref|ZP_00239255.1| hypothetical protein membrane Spanning protein [Bacillus cereus
           G9241]
 gi|47554798|gb|EAL13150.1| hypothetical protein membrane Spanning protein [Bacillus cereus
           G9241]
          Length = 344

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 1/153 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +   +   +          +IA+   ++   A W+ G P  + L ++  ++ +IP  G  
Sbjct: 188 EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVI 247

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS   + +     G I     + +   +   +    L P  +     LP   TF  L+  
Sbjct: 248 ISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFS 307

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              +G+ GL IG  +   +  +   +   ++++
Sbjct: 308 EHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 340


>gi|186683313|ref|YP_001866509.1| hypothetical protein Npun_R3077 [Nostoc punctiforme PCC 73102]
 gi|186465765|gb|ACC81566.1| protein of unknown function UPF0118 [Nostoc punctiforme PCC 73102]
          Length = 365

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/308 (12%), Positives = 107/308 (34%), Gaps = 15/308 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++ ++ + I L  L+ ++     V +A+++      +  SF  +         VI+ + 
Sbjct: 5   QLIGFLALVISLYILWQIRQILLVVFAAVVLATALNQL-VSFFQRFRIKRGIAVVISIIL 63

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++ + +     +    + ++++  + + +A +       WL ++       +   +++  
Sbjct: 64  LLTVLVGFFALIVPRLVDQLQQFGNIMPMALERLRSWNNWLQNV-----IPDQLLENIRG 118

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII-FMIIALFFFYRDGFSISQQL 188
            + L    + +L     +F    +S   +I        +  M++A    YR GF +    
Sbjct: 119 LRYLTQGLQDWLNRLINNFFSLVSSSLSIILGLLLFIALTIMLLANPLPYRHGFIL---- 174

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L    +      I       +     G  +  +           + GVP  +   ++ 
Sbjct: 175 --LFPAFYRQRVDDILNKCATSLTGWIKGTLLTMLVIASFSYVGLLILGVPLPLVNAILA 232

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++  IP  G  +S    ++  L +     A  + L+  I+  +    + P ++     L
Sbjct: 233 GLLEFIPNVGPTLSVIPPALLALSEEPWKIAAVVALYFGIQQ-VESLIIVPLVMKSQASL 291

Query: 308 PFLPTFFG 315
               T   
Sbjct: 292 LPAVTLVA 299


>gi|294630421|ref|ZP_06708981.1| integral membrane protein [Streptomyces sp. e14]
 gi|292833754|gb|EFF92103.1| integral membrane protein [Streptomyces sp. e14]
          Length = 342

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 95/298 (31%), Gaps = 22/298 (7%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           P++   +  +    +  A I               +   G      + + +    Q    
Sbjct: 54  PLFRRLVRARVNR-SVAAGITCA----------AVVVVVGGTGYIVVRALIDSWQQIADS 102

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           +      +          T         + L   F  T     I   +     +  +Y  
Sbjct: 103 LEHAAKSL--ASHLGPAGTSLSDLAGQGRNLLSKFGGTAASGVISGVS-----VVAEYAA 155

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
             +  ++ +FFF RD     + L +L         + ++R     +     G TIIA  +
Sbjct: 156 MAVLALLLVFFFLRDAGRARRALRTLSPGDSADTVESMARRAFTAVEGFMRGTTIIAFID 215

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
            + +     L  VP  V LG +  + A IP        AVS+ L+   +   A  L+  G
Sbjct: 216 AVCITVGLLLLDVPGAVGLGALVFVGAYIPYLGAFISGAVSV-LVALADRGFAVALWALG 274

Query: 286 AIEL--FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAV 340
            +     +    L+P +    +++        +  G    G++G+ +  P+  A   V
Sbjct: 275 VVVAVQLLEGHVLQPLIQSRTVQMHPAAVLLAITAGASVAGIVGMLLAVPLTAAAFGV 332


>gi|73670520|ref|YP_306535.1| hypothetical protein Mbar_A3065 [Methanosarcina barkeri str.
           Fusaro]
 gi|72397682|gb|AAZ71955.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 342

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/318 (12%), Positives = 101/318 (31%), Gaps = 28/318 (8%)

Query: 5   MLNPQGIMRWMI----MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M N     R ++      I+ + +  +         ++ I     P+      KK+    
Sbjct: 3   MENQSIPARILLYSTAAVILTIGMREIAPILTVFFFSVFIALIFTPLVRWL--KKKGIPG 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            L+V   + +    ++ L  +     ++    + +                        +
Sbjct: 61  GLSVFLAILLFAFIVLILGVIVASAAIQFGSQIPQYQD-------------------QLT 101

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +  +    +  S    S   +    +     F        ++   +   +I+   F   +
Sbjct: 102 DFMSNLAKYIPSYDGFSVQSIIRGIVSITVSFVVNIFNGLVNTGTTAGIIILTTAFMLIE 161

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
             ++ ++++   E       +    I  + +    +    I +   + +   + ++G+  
Sbjct: 162 ATNVPEKINEKIEKQSELQLR--LSIFSRKLVKFIVIRAEINLITAVAITITFLISGIDY 219

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  GV+  I++ IP  G  I+     +  L K     A  + +  A    I +  L P 
Sbjct: 220 AILWGVLIFILSYIPYIGLVIASIPPIVIALFKYGPLGALAVIVVIAAVDGITENVLFPS 279

Query: 300 LVGGPIKLPFLPTFFGLV 317
           L+G  ++L     F  L+
Sbjct: 280 LMGKGLQLSPAFLFLALI 297


>gi|323359731|ref|YP_004226127.1| permease [Microbacterium testaceum StLB037]
 gi|323276102|dbj|BAJ76247.1| predicted permease [Microbacterium testaceum StLB037]
          Length = 357

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/306 (13%), Positives = 107/306 (34%), Gaps = 4/306 (1%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
           F+ ++        +   + V+ +F   +  +    + ++ +LV+++    + G      +
Sbjct: 53  FLERRGLPRWAAVLATILGVLGIFAGIIFMVVPIIVSQITQLVAQIEQLFRPG-RWNEIV 111

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
                   A+  W +       ++    T    +    I      FG            +
Sbjct: 112 LGAQDWASANFPWLRLDEVWAGIQHWFSTLDVGSISTMIGNSLLTFGGAIAAGLGGAFIV 171

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           +I   +F     S+   +  L      A + +++  +   +    +G   + +  G++  
Sbjct: 172 LILTIYFTASTPSLKSAVYQLVPASKRARFIELAEKITDSVGYYVMGQVSLGVINGILSA 231

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK---GNIFNATCLFLWGAI 287
               +   P    L V+    ++IP    ++ + + +   +    G+   A    ++  I
Sbjct: 232 IFLSIINAPFPAVLAVVAFFFSLIPLVGTLTGSTIIVLTCLIPGLGSPTIAIIALIYYLI 291

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            + I    + P ++   + +P        + G   + LLG  I   + A I +I++E I+
Sbjct: 292 YMQIEAYVISPRIMNRAVSVPGAVVVISALAGGALLNLLGALIAIPVAASILIIYREVII 351

Query: 348 AIKENK 353
             +  +
Sbjct: 352 PRQNER 357


>gi|294789657|ref|ZP_06754891.1| acetyltransferase, GNAT family [Simonsiella muelleri ATCC 29453]
 gi|294482458|gb|EFG30151.1| acetyltransferase, GNAT family [Simonsiella muelleri ATCC 29453]
          Length = 361

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 121/320 (37%), Gaps = 6/320 (1%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           +    P + A ++ +   P+      ++ +  T  ++   V  + + +  LL +    + 
Sbjct: 30  RDILMPFIVAAVLAYILNPLVVMLQKRRVKR-TRASLWVMVFTLLVLVGLLLVIVPMLVK 88

Query: 88  EMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
           +++ ++ K+ +L +     V  W +    G +A           QS      + ++    
Sbjct: 89  QIQSVIGKLPLLIDFLQYKVLPWYNG-KFGEYARLNEQTITEWLQSNATGITSGVQNALK 147

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +P    + G     +   ++ + + L++F  D       L       +   + +I+R 
Sbjct: 148 KTMPMLLQQ-GTSIAGWLSDVMLLPLLLYYFLLDWSRWGNGLQRFVPRRYVPTYTRITRK 206

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI--SFTA 264
           +  V+     G  ++ I  GLV G    L G+ S  A+G++  ++  IP          A
Sbjct: 207 LNDVLSEFLRGQLMVMIIMGLVYGLGLMLTGLESGFAIGMVAGLLVFIPYLGAFTGLLLA 266

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
               +L  G+      +++   I   +    + P +VG  I L      F L+     MG
Sbjct: 267 TLAAVLQFGSWHGVIWVWVVFGIGQTLESFFITPQIVGDKIGLSPFWVIFALMAFGSLMG 326

Query: 325 LLGLFIGPVLMALIAVIWKE 344
             G+ +   L A+  V+ +E
Sbjct: 327 FAGMLVALPLAAICLVLLEE 346


>gi|90019906|ref|YP_525733.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89949506|gb|ABD79521.1| protein of unknown function UPF0118 [Saccharophagus degradans 2-40]
          Length = 357

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/325 (15%), Positives = 106/325 (32%), Gaps = 16/325 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           ++ +   L ++YF K    P++ A      + P+ +               ++ + V+  
Sbjct: 22  YLAILATLYTIYFAKFILLPIVVAAFFALFTSPLVARLEKLFLPR-----ALSAIIVLVG 76

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            I  L F+        ++   K+         V   +S   G    S           S 
Sbjct: 77  VIGALSFVAMLFTSPAQQWWDKL-------PEVANSMSSSIGEATQSLNKATSNGAAASN 129

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
             +++         F+  F   F          I+  I  ++FF   G  +  +      
Sbjct: 130 TDIAKASENIRNTTFLAMF-KSFASSTPLVLTQILGTIFLIYFFLVHGQVLLLRFVQARS 188

Query: 194 HLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                    ++   + + +      +T + I  G  +G A+++  V      G +   + 
Sbjct: 189 SFSDKRQAVELLSEMQQQLSRYVTTITCVNIALGFCVGCAFYIMKVEDPFLWGALAGALN 248

Query: 253 MIPGGAPIS-FTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             P   P+   TA ++   ++   I  A  +     +   I  + + P L+G  + L  L
Sbjct: 249 FAPYLGPLVSATAFALVAYLQFNQIEMALLIPGVYLLINLIESQFVTPTLLGSTLNLNPL 308

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLM 335
             F  LV      G  G+ +G  L+
Sbjct: 309 VVFVWLVLWGWLWGGFGMLVGVPLL 333


>gi|229035076|ref|ZP_04189023.1| hypothetical protein bcere0028_51020 [Bacillus cereus AH1271]
 gi|228728261|gb|EEL79290.1| hypothetical protein bcere0028_51020 [Bacillus cereus AH1271]
          Length = 324

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 58/158 (36%), Gaps = 1/158 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +   +   +          +IA+   ++   A W+ G P  + L ++  ++ +IP  G  
Sbjct: 165 EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVI 224

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS   + +     G I     + +   +   +    L P  +     LP   TF  L+  
Sbjct: 225 ISLFPLCMIAYNIGGIMYVVYILIIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFS 284

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
              +G+ GL IG  +   +  +   +   ++ +  K  
Sbjct: 285 EHFLGVWGLIIGIPIFIFLLDVLDVTSDEMENDARKNK 322


>gi|262195294|ref|YP_003266503.1| hypothetical protein Hoch_2065 [Haliangium ochraceum DSM 14365]
 gi|262078641|gb|ACY14610.1| protein of unknown function UPF0118 [Haliangium ochraceum DSM
           14365]
          Length = 358

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 94/273 (34%), Gaps = 10/273 (3%)

Query: 77  PLLFLFYYGMLEMKELVSKVV---LANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           PL        + +  L+   V      Q    +P +   +      +  W     H + +
Sbjct: 73  PLAIALVVTAVTLSILLISAVIGGSLTQFQEQIPLYQERLQFLFSGAMSWL----HERGV 128

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           ++             + R A       L    ++  +I+ + F   +  S++ +L +   
Sbjct: 129 QVDLAMLTSAVDGAAVMRLAGNTAGSLLAALSNVFLVILTMVFMLLEAQSMNGKLRAALG 188

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
              P           + ++       ++++  G +      L GV      G+I  +   
Sbjct: 189 D--PKADLSGFAQAAERVQKYLAIKAVMSLITGTLATLVCVLTGVDFPFLWGLIAFLFNF 246

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +P  G+ I+     +  LI+  + +A  + L   +   ++   L P L+G  + L  L  
Sbjct: 247 VPNIGSIIAALPPVLLALIENGLGSAVLVILGYVLINTVIGNMLEPRLMGRRLGLSTLVV 306

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           F  L+      G +G+ +   L  ++ ++   S
Sbjct: 307 FLSLLFWGWVWGPMGMLLSVPLTVVLKIVLDHS 339


>gi|329666438|gb|AEB92386.1| hypothetical protein LJP_0047 [Lactobacillus johnsonii DPC 6026]
          Length = 349

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 56/345 (16%), Positives = 114/345 (33%), Gaps = 17/345 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            + R + + +I++ LY  +     +L   I  +    +      K     +  A +  V 
Sbjct: 13  TVHRLVTLCLIILVLYAARSMMNTILLTFIFTYLIVHLIRFTQKKI---PSLPAQVIVVL 69

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              L I  + F     +     L+ ++V  +   I   +         W S   + ++S+
Sbjct: 70  AYLLVIAIIYFAITIYV---PILIKQIVKMSHSLIKFYQS----DDMNWVSRYLSHYISN 122

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            +            +G+  +    + FG + + + +S+I                   L 
Sbjct: 123 SEITTQ------AKHGVTILVHALTNFGTLTIAFFMSLIMSFFYTIELNSMTEFSHTFLQ 176

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           S                              IA+    +      +  +P  +ALG++  
Sbjct: 177 SRHLSWVFEDVAYFGNKFVNTFGVVLEAQFFIALCNTAMTMICLIIMRMPQIIALGLMVF 236

Query: 250 IMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I+++IP  G  IS   +S+     G +     +F+   I   I    L P  +    +LP
Sbjct: 237 ILSLIPVAGVIISLIPLSLVAYSVGGLRYVIYIFIVIMIIHAIEAYILNPKFMSSKTELP 296

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              TF  L+ G   +G  GL +G  +   +  I     +  K+ +
Sbjct: 297 IFYTFVVLLAGEHFLGTWGLIVGVPIFTFLLDILGVKSVKRKKPQ 341


>gi|238916986|ref|YP_002930503.1| putative permease [Eubacterium eligens ATCC 27750]
 gi|238872346|gb|ACR72056.1| putative permease [Eubacterium eligens ATCC 27750]
          Length = 416

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/305 (12%), Positives = 106/305 (34%), Gaps = 20/305 (6%)

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
           S  L+V   + +  LFI  ++ +    ++     + +++  N +   V  ++        
Sbjct: 88  SNNLSVFTGLLIAILFIYFMIIVIIPNLVNSVVRLIQIIPDNVNK--VIDFVQKFLNENE 145

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL---SIIFMIIALF 175
               +++++            +L    + +    A+      ++  +   +++   I   
Sbjct: 146 TLMKYSENIID--KTYTFINDWLGNEFLGYAQGIATGVSTGVVNIIVVLFNVLIGFIVAA 203

Query: 176 FFYRDGFSISQQ----LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
           +       +++Q    + S+ +    A   +  +   KV      G  + A    L+   
Sbjct: 204 YLLTARKKLAKQGEMVVYSIFKKERAASVMEEIKYTDKVFSGFVNGKILDAFVIALICFI 263

Query: 232 AYWLAGVPSH-------VALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFL 283
           +  +  + +        + +  I  I  +IP  G  I++   ++  LI  N        +
Sbjct: 264 SLKIFTICNPGKEMMSEILIAFIVGIFNVIPFFGWYIAWFIGALLCLIV-NPAQCLFFVI 322

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +  I   I    + P ++G    +      F ++      G  G+ +G  + A+I  + K
Sbjct: 323 FNFILQQIDGNIIGPKILGNTTGISSFWVLFAILLFGDIWGFAGMLLGVPIFAVIYHLIK 382

Query: 344 ESIMA 348
           + +  
Sbjct: 383 KWVFK 387


>gi|73663082|ref|YP_301863.1| putative permease [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495597|dbj|BAE18918.1| putative permease [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 361

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 83/218 (38%), Gaps = 2/218 (0%)

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           ++    +   +  +   F+     +I +   L +  +D       +  L +     +   
Sbjct: 142 SDSTANVLSNSLSYLTSFISTLFLLIMVPFFLIYMLKDHERFIPFIAKLFKGERKVFIVD 201

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPIS 261
           + + +   ++S   G   ++I  G++L   Y + G+   + L +   +  MIP  G  ++
Sbjct: 202 LLKDLNDTLKSYIQGQVTVSIILGIILYIGYSIVGLNYTLLLVMFACVANMIPFLGPWMA 261

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F    I  +I+ +      + +   I   +    + P ++G  + +  L     ++    
Sbjct: 262 FAPAGIIGIIQ-SPTIFIWVCIITLIAQQLEGNVITPNVMGKSLNIHPLTIIVVILAAGN 320

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             G + + +   L A+I  I +      ++  EK +S+
Sbjct: 321 LGGFVLILVAVPLYAVIKTIVRNVFHYREKIMEKANSD 358


>gi|228982151|ref|ZP_04142442.1| hypothetical protein bthur0002_53070 [Bacillus thuringiensis Bt407]
 gi|228777576|gb|EEM25852.1| hypothetical protein bthur0002_53070 [Bacillus thuringiensis Bt407]
 gi|326943236|gb|AEA19132.1| hypothetical protein CT43_CH5479 [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 300

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 1/153 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +   +   +          +IA+   ++   A W+ G P  + L ++  ++ +IP  G  
Sbjct: 144 EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVI 203

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS   + +     G I     + +   +   +    L P  +     LP   TF  L+  
Sbjct: 204 ISLFPLCMIAYNIGGIMYVVYILIIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFS 263

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              +G+ GL IG  +   +  +   +   ++++
Sbjct: 264 EHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 296


>gi|152984980|ref|YP_001349742.1| hypothetical protein PSPA7_4390 [Pseudomonas aeruginosa PA7]
 gi|150960138|gb|ABR82163.1| membrane protein, putative [Pseudomonas aeruginosa PA7]
          Length = 357

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 56/364 (15%), Positives = 122/364 (33%), Gaps = 22/364 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+    + + ++  +++ +    +    G  APVL+A++I F    +       +     
Sbjct: 9   MQRYFSDEEAVVLAIMLVLGFSVILAFGGMLAPVLAAMVIAFLIQGVVGMLERFRMPH-- 66

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI---PVPRWLSDIPGGM 117
                       LF V L++  + G+L +  +V   +L  Q       +PR L +    +
Sbjct: 67  ------------LFAVWLVYSLFLGLLALFLVVLLPLLWQQLFTLFNELPRMLGEWQSVL 114

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
                    L   + +    E      G    +    +     + ++  + ++ + I +F
Sbjct: 115 LMLPERYPSLISEEQVLKAIEAARGEFGQIGQWALTSSLASLPVVVNIMIYLVLVPILVF 174

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           FF +D                    K++   + + I +   G  I  +  G V   A+  
Sbjct: 175 FFLKDKKRFYTWFRRYLPRERGL-MKQVWAEMNQQIANYIRGKVIEIVITGAVTYIAFAY 233

Query: 236 AGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIF-NATCLFLWGAIELFIVD 293
            G+     L ++  +  ++P  GA +    V++    +         L +  AI   +  
Sbjct: 234 LGLNYAALLALLVGLSVVVPYIGAVVVSVPVAMIAFFQWGWSDQFIYLMVAHAIIQALDG 293

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             L P L    + L  +     ++      G  G+F    L  L+  +       + E+ 
Sbjct: 294 NVLVPLLFSEAVNLHPVAIICAVLLFGGLWGFWGVFFAIPLATLVKAVLDAWPKDLPESP 353

Query: 354 EKIS 357
              S
Sbjct: 354 AATS 357


>gi|320106143|ref|YP_004181733.1| hypothetical protein AciPR4_0906 [Terriglobus saanensis SP1PR4]
 gi|319924664|gb|ADV81739.1| protein of unknown function UPF0118 [Terriglobus saanensis SP1PR4]
          Length = 330

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 114/335 (34%), Gaps = 13/335 (3%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           M I+L + + L      V  + +      P+ +   + K    ++        V+ L  +
Sbjct: 1   MLILLYAGWHLLRVLEIVYVSALFAVVLSPVVAKITTWKI--RSWHPSRPIAVVILLVAL 58

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
                 ++ +     +      A      +P  L+ I     A +L  ++++        
Sbjct: 59  FGALFLFFRLGLPPVMRDLKEFATDLPARIPVLLARIKNMPLADKLGIENITTRVETAA- 117

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                 +    +I      +     D   +II  +    +F  +G  + +   S  +  F
Sbjct: 118 ------SATAAYIVSSLPLWAEHLFDIVTTIILTV----YFILEGDEVYKYFLSTLKTGF 167

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                 + R+  + +    +G  I+   +G      +    +   V LG++  I  +IP 
Sbjct: 168 RRRMDGMFRVAEERVSRWLIGQLILMGIQGAYSLIVFGALHIRYFVLLGILMGITNIIPI 227

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
              +    +   +    +  +A  + ++ A      +  L P ++   + L  +     L
Sbjct: 228 AGNLVTIVIVFGVAAADSWPHAFLVLIFYAAYTQFENAWLTPRIMKQSVDLMGIAVLIAL 287

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           + G    G++G  +     AL+AV   E ++  +E
Sbjct: 288 LVGSTLAGIVGALVAVPSAALVAVFADEFLVQKEE 322


>gi|229142182|ref|ZP_04270707.1| hypothetical protein bcere0013_52680 [Bacillus cereus BDRD-ST26]
 gi|228641471|gb|EEK97777.1| hypothetical protein bcere0013_52680 [Bacillus cereus BDRD-ST26]
          Length = 344

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 1/153 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +   +   +          +IA+   ++   A W+ G P  + L ++  ++ +IP  G  
Sbjct: 188 EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVI 247

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS   + +     G I     + +   +   +    L P  +     LP   TF  L+  
Sbjct: 248 ISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFS 307

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              +G+ GL IG  +   +  +   +   ++++
Sbjct: 308 EHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 340


>gi|30265457|ref|NP_847834.1| hypothetical protein BA_5688 [Bacillus anthracis str. Ames]
 gi|47531020|ref|YP_022369.1| hypothetical protein GBAA_5688 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188276|ref|YP_031529.1| hypothetical protein BAS5291 [Bacillus anthracis str. Sterne]
 gi|49480456|ref|YP_039428.1| membrane protein [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52145245|ref|YP_086702.1| membrane protein [Bacillus cereus E33L]
 gi|65317419|ref|ZP_00390378.1| COG0628: Predicted permease [Bacillus anthracis str. A2012]
 gi|118480467|ref|YP_897618.1| hypothetical protein BALH_4941 [Bacillus thuringiensis str. Al
           Hakam]
 gi|167636254|ref|ZP_02394557.1| putative membrane protein [Bacillus anthracis str. A0442]
 gi|167641447|ref|ZP_02399697.1| putative membrane protein [Bacillus anthracis str. A0193]
 gi|170689205|ref|ZP_02880402.1| putative membrane protein [Bacillus anthracis str. A0465]
 gi|170708676|ref|ZP_02899115.1| putative membrane protein [Bacillus anthracis str. A0389]
 gi|177651829|ref|ZP_02934412.1| putative membrane protein [Bacillus anthracis str. A0174]
 gi|218906619|ref|YP_002454453.1| hypothetical protein BCAH820_5533 [Bacillus cereus AH820]
 gi|228936720|ref|ZP_04099511.1| hypothetical protein bthur0009_51550 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228949160|ref|ZP_04111429.1| hypothetical protein bthur0007_52810 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229600969|ref|YP_002869648.1| hypothetical protein BAA_5718 [Bacillus anthracis str. A0248]
 gi|254687121|ref|ZP_05150979.1| hypothetical protein BantC_25223 [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724096|ref|ZP_05185881.1| hypothetical protein BantA1_16773 [Bacillus anthracis str. A1055]
 gi|254735558|ref|ZP_05193265.1| hypothetical protein BantWNA_10409 [Bacillus anthracis str. Western
           North America USA6153]
 gi|254742178|ref|ZP_05199865.1| hypothetical protein BantKB_14393 [Bacillus anthracis str. Kruger
           B]
 gi|254755912|ref|ZP_05207944.1| hypothetical protein BantV_25864 [Bacillus anthracis str. Vollum]
 gi|254761624|ref|ZP_05213644.1| hypothetical protein BantA9_25203 [Bacillus anthracis str.
           Australia 94]
 gi|301056903|ref|YP_003795114.1| hypothetical protein BACI_c54310 [Bacillus anthracis CI]
 gi|30260135|gb|AAP29320.1| putative membrane protein [Bacillus anthracis str. Ames]
 gi|47506168|gb|AAT34844.1| putative membrane protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49182203|gb|AAT57579.1| membrane protein, putative [Bacillus anthracis str. Sterne]
 gi|49332012|gb|AAT62658.1| membrane protein [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51978714|gb|AAU20264.1| membrane protein [Bacillus cereus E33L]
 gi|118419692|gb|ABK88111.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|167510622|gb|EDR86018.1| putative membrane protein [Bacillus anthracis str. A0193]
 gi|167528369|gb|EDR91140.1| putative membrane protein [Bacillus anthracis str. A0442]
 gi|170126458|gb|EDS95346.1| putative membrane protein [Bacillus anthracis str. A0389]
 gi|170666848|gb|EDT17614.1| putative membrane protein [Bacillus anthracis str. A0465]
 gi|172082533|gb|EDT67597.1| putative membrane protein [Bacillus anthracis str. A0174]
 gi|218535526|gb|ACK87924.1| putative membrane protein [Bacillus cereus AH820]
 gi|228810505|gb|EEM56857.1| hypothetical protein bthur0007_52810 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228822929|gb|EEM68770.1| hypothetical protein bthur0009_51550 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|229265377|gb|ACQ47014.1| putative membrane protein [Bacillus anthracis str. A0248]
 gi|300379072|gb|ADK07976.1| putative membrane protein [Bacillus cereus biovar anthracis str.
           CI]
          Length = 344

 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 1/153 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +   +   +          +IA+   ++   A W+ G P  + L ++  ++ +IP  G  
Sbjct: 188 EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVI 247

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS   + +     G I     + +   +   +    L P  +     LP   TF  L+  
Sbjct: 248 ISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFS 307

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              +G+ GL IG  +   +  +   +   ++++
Sbjct: 308 EHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 340


>gi|295095978|emb|CBK85068.1| Predicted permease [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 346

 Score = 61.0 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 107/328 (32%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +        
Sbjct: 7   TLNGLKIVIMLGMLMIILTGVRFAADIIVPFILALFIAVILNPLVQRMVRLRIPR-VLAI 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +    ++   ++ + +L        + L +         + +  WL             
Sbjct: 66  SLLISIIIVAMVLLVAYLGTSLNELARTLPTYRSSLATPLLQIEPWLQR----------- 114

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                    +++  E  LK    +      +       +   SI  + + + F   +   
Sbjct: 115 -------AGIEVSVEELLKYIDPNAAMTIVTSLLAQLSNAMTSIFLLFLTVVFMLLEVPQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +L  +     P       +     +    +  T I++  GLV+        V     
Sbjct: 168 LPAKLQHIMVR--PVEGMGAIQRALDSVSRYLVLKTAISLVTGLVVWGMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++     + +L+   +++A  L     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPILQVLVFSGLYDALILLAGYLVINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|301169043|emb|CBW28640.1| predicted inner membrane protein [Haemophilus influenzae 10810]
          Length = 348

 Score = 61.0 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 54/346 (15%), Positives = 120/346 (34%), Gaps = 23/346 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+  +   + ++    + IIL  +        P L +L I     P+      ++     
Sbjct: 1   MQNNLNLHRTLLGIASVIIILAGVKLAAEIVVPFLLSLFIAIICSPMIKGMTQRRIPH-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +LA+     ++ L    L  L      E               IP  + L          
Sbjct: 59  WLAITLLFVLISLVFFFLAGLINSTAREF-----------TQSIPQYKVLLSQRVSDLTG 107

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L   +L    S + + E F  +  ++F+ R    F  +  +  + ++ +I    F   +
Sbjct: 108 LLQRFNLPFTLSRETIQENFDPSIIMNFVSRVLLNFSGVVSNVFVLVLVVI----FMLAE 163

Query: 181 GFSISQQLDSLG---EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             ++  +   +     H      + I R++  VI    +     ++  G+ +       G
Sbjct: 164 APTMKHKFAMVISSTPHDAVKEERHIDRVLQGVIGYLGIKSI-TSLLTGVGIFILLEACG 222

Query: 238 VPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           V   +    ++ ++  IP  G+ I+   + +  L+         + +       +V   +
Sbjct: 223 VQYAILWATLSFLLNYIPNIGSIIAAIPIIVQALLLNGFGIGFGVAIGVIAINMVVGNII 282

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            P ++G  + L  L  F  L+     +G +G+ +  P+ MAL   +
Sbjct: 283 EPKMMGQRLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMALKIAL 328


>gi|111021262|ref|YP_704234.1| hypothetical protein RHA1_ro04285 [Rhodococcus jostii RHA1]
 gi|110820792|gb|ABG96076.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 357

 Score = 61.0 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 53/327 (16%), Positives = 111/327 (33%), Gaps = 21/327 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + + +  +        P+  AL++     P+      K     T+LA IA + V+   I+
Sbjct: 14  LVVTVAGIQVAASIVGPIFLALMLTVAVHPLPEWLHRK--GLPTWLATIAAILVVNSIIL 71

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L+      + ++  L+ +        I                      L+        
Sbjct: 72  VLVLSLALSVAQLATLLPEYADDFTALIDDA----------------QSFLNSNGVNSTD 115

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           S+T L       +  F        L    +++F++  L F   DG S   ++  + +   
Sbjct: 116 SQTLLSQVDYGKVFGFVEGILQSMLGIFSNLLFVLALLLFMAVDGSSYGARMRIVTQ--M 173

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
                          R+  +  T+  +   ++   A W  G+P  +  G+++ I   IP 
Sbjct: 174 RPDIATALTSFSAGTRTYLIVSTVFGLIVAVIDTGALWALGIPLPILWGLLSFITNYIPN 233

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G  +     ++  L++G       + +  ++   I+   ++P  VG  + L    TF  
Sbjct: 234 VGFILGLVPPALLALLQGGPGLMLTVIVVYSVINVIIQSVIQPKFVGDAVGLSVTFTFLS 293

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIW 342
           LV     +G LG  +   L  +   + 
Sbjct: 294 LVFWAWILGPLGAILAIPLSLMAKALL 320


>gi|83955633|ref|ZP_00964213.1| Conserved hypothetical membrane/transport protein [Sulfitobacter
           sp. NAS-14.1]
 gi|83839927|gb|EAP79103.1| Conserved hypothetical membrane/transport protein [Sulfitobacter
           sp. NAS-14.1]
          Length = 353

 Score = 61.0 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/332 (15%), Positives = 115/332 (34%), Gaps = 19/332 (5%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +++  + V+ YF K    P++   ++  T  P+  +             ++ T + + + 
Sbjct: 2   LVLISLFVTAYFAKDLILPIVLGFLLALTLSPVGRALYRIGVPHPVSAFLLVTATSLVIA 61

Query: 75  IVPLLFLFYYGM--LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
            V LL      +   E+ E+  ++ +           +          +L T+    PQ 
Sbjct: 62  AVVLLSAGTVAIWSDEIPEMGREIQIKLSGVSNAVETMRS--ASEEVEKLGTETGGKPQE 119

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           + +     L T         A            S+  ++I   F    G     +L    
Sbjct: 120 VVVRQPGLLDTAMDTVSKTGA------------SLAVILILALFLLGSGELFYLKLVQSM 167

Query: 193 EHLFP-AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
             L            V K +    L +  I    G+++G+   + G+PS    G+   ++
Sbjct: 168 PTLTEKKRALHTVYDVEKRVSRYLLTIATINAVLGILVGTYLTVLGLPSAYIWGIAAFML 227

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK-TLRPFLVGGPIKLPF 309
             +P  G       V+ + L+  +      L   G + L +++   + P+LVG  +++  
Sbjct: 228 NFLPYIGGFAGVLLVAGFSLVTFDTIGYAMLAPTGYLTLTLLEGQIITPWLVGRRLEMNT 287

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +  F  +V      G+ G  +    + +  V+
Sbjct: 288 VAVFLTVVFWGWLWGIPGALVAVPFLVVFKVV 319


>gi|86608635|ref|YP_477397.1| hypothetical protein CYB_1159 [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557177|gb|ABD02134.1| putative membrane protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 382

 Score = 61.0 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/331 (14%), Positives = 123/331 (37%), Gaps = 18/331 (5%)

Query: 31  FAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
              +L+A ++ F   +P+    + +   S      +     + L ++  + +      ++
Sbjct: 35  LTTILTAAVLAFLLNYPVQ--VLRRYRVSRGLAVTLVFALSVVLLVLVGIAVVPVLAKQV 92

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK--TNGID 147
            +L          G  +P W+  +   +    LW    +       L  T L       +
Sbjct: 93  VQL----------GARIPEWVDTLQNWLDQISLWAAERNINLGQTELVNTLLNRLQASAE 142

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            I   +    +   +  + ++ +++   +    G    Q L SL    +     +   + 
Sbjct: 143 KIAGQSLDLLLGTFNQVIDLVLVLVLALYMLLYGGQFWQGLLSLFPKPWGPRIGEALAL- 201

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
               ++  +   ++     L+L   +    VP  +  G++  ++ +IP    +     + 
Sbjct: 202 --SFQNFLISQLVLGFIMALMLVPVFGFLRVPFGLLFGLLIGLLEVIPLVGGVIGIGAAA 259

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            LL   +I+ +  + L   I   + D+ + P L+G  I L  +     L+ G +  G+LG
Sbjct: 260 VLLAFQDIWLSLKVVLVSLIVQQVKDRVIAPRLMGELIGLNPVWILIALLVGAQLGGILG 319

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           + +   L +++  +++ +  A    ++++ S
Sbjct: 320 VIVAIPLSSVVKSLYEIARSADLAAEDELGS 350


>gi|254563129|ref|YP_003070224.1| hypothetical protein METDI4791 [Methylobacterium extorquens DM4]
 gi|254270407|emb|CAX26407.1| conserved hypothetical protein; putative membrane protein
           [Methylobacterium extorquens DM4]
          Length = 651

 Score = 61.0 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/352 (12%), Positives = 110/352 (31%), Gaps = 18/352 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G++   +  +++ +LYF +  F P++ A+++ F   P+ +     +       +VIA V
Sbjct: 23  RGLLTLAVGVVLVTALYFGREVFIPLVLAVLLSFVLAPVVNLLRRLRLG--RVPSVIAAV 80

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR--WL---SDIPGGMWASELW 123
            +    I  +  +    +  +   + +     Q      +  WL   S I          
Sbjct: 81  LLALAVIGGIGAVIGTQVAGLAGDLPQYQATVQKKFAGLQAGWLGNASRIFQRFNHQVHN 140

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIP---------RFASRFGMIFLDYCLSIIFMIIAL 174
               +        +     T     +            A +     ++   ++  +++ +
Sbjct: 141 ATQKADAAGTAASTGPAGDTPKAQLVKVQEPDPSPFTLAEKVLGPIVEPLTTVGIVLVVV 200

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
            F       +  ++  L                   + + FL    +    G ++G   W
Sbjct: 201 VFLLLQREDLRNRMIRLFGSGDLHRTTMAMDDAAGRLGTYFLAQLGMNATFGFIIGLGLW 260

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL--FLWGAIELFIV 292
             GVP+ +  GV +A+M  +P           + L    +   +  +   +   +   + 
Sbjct: 261 FIGVPNPLLWGVFSALMRFVPYIGAFLSALFPLALAAAVDPGWSMVIATAILFLVVEPLF 320

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              + P L G    L         +      G +GL +       + V+ + 
Sbjct: 321 GHVIEPLLYGHSTGLSPFAVIVSTLFWGFLWGPIGLILATPFTVCLVVLGRH 372


>gi|83949737|ref|ZP_00958470.1| hypothetical protein ISM_01545 [Roseovarius nubinhibens ISM]
 gi|83837636|gb|EAP76932.1| hypothetical protein ISM_01545 [Roseovarius nubinhibens ISM]
          Length = 351

 Score = 61.0 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 135/359 (37%), Gaps = 21/359 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           MR  M+    +   +++    +    LK     FAP++ AL+ G    P+          
Sbjct: 1   MRRYMMADPVVRVSLVLIATTLGFGALKLGADVFAPLVFALVTGVILAPLTEYLERL--N 58

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
             + ++    + + C F+V L  L    + ++ + + ++    +       W++++   +
Sbjct: 59  VPSRISAFLILFLGCAFVVVLAVLIEPMIWQVADQLPRIRQEIRS------WIAELRNLL 112

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
              E   K +         S+      G+D +P   +   +       ++IF+   LFF 
Sbjct: 113 SGLEDMNKEVEQALGGDGQSKE---KEGVDAVPDLTAALFLAPQIIAQALIFIGTLLFFL 169

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
                  S     +G+       ++    V +++   F+ ++ I  G GL +G+   L G
Sbjct: 170 MTRKGIYSWLSRHIGDDEDTEVIQERFTTVERLVSQYFITISAINAGLGLAVGTVMTLLG 229

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK--- 294
           +P     G++  ++  +    PI+F      LL+ G +     + L  A    +++    
Sbjct: 230 LPGGWLWGLVAFMVNFVLYVGPITFLLA---LLVTGVVVFDGVMSLAPAAAYLMINMIEA 286

Query: 295 -TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             + P L+G  + +  L  F  LV  +   G +G  I   +   + V+      A +  
Sbjct: 287 QFVTPALLGRYMSVNPLLIFVSLVFWLWLWGPIGAIIAIPVTVFVLVMLDIFHPAEEAE 345


>gi|295691896|ref|YP_003600506.1| permease [Lactobacillus crispatus ST1]
 gi|295030002|emb|CBL49481.1| Permease [Lactobacillus crispatus ST1]
          Length = 344

 Score = 61.0 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 53/343 (15%), Positives = 114/343 (33%), Gaps = 27/343 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            N   + R++++ +I+  LY ++     VL   I  +    +         +  T L V 
Sbjct: 9   KNNIPLRRFVVLLLIIACLYEIRAMMNTVLLTFIFTYVIVHLIHLVQRYFPKIPTGLIVA 68

Query: 66  ATVSVMCLFIVPLLFL-FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            T  ++   +  ++ +     + ++ ++V  V+   +                  +   T
Sbjct: 69  VTYLIILALLYFVVTIYLPMLVGQISKMVKSVMAFYESN-----------ESSRLASHVT 117

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +++S  + +               +  FA      F    ++    +I  FF+  +   +
Sbjct: 118 RYISKGEIVTQ----------AKRVGTFALHTVTNFGSLTIATFMSLILSFFYTIELDRM 167

Query: 185 SQQ----LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
            +     + S          +   +               IAI    +         +P 
Sbjct: 168 IEFSKLFVKSGYFKWLFEDIRYFGKKFTNTFGVVLEAQFFIAICNTALTMIGLAFMHMPQ 227

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +ALG++  I++++P  G  IS   +SI     G I     +F+   I   I    L P 
Sbjct: 228 IIALGLMVFILSLVPVAGVIISLIPLSIIGYSVGGIRYVIYIFIMIMIIHAIEAYVLNPK 287

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            +    +LP   TF  L+      G  GL +G  +   +  + 
Sbjct: 288 FMASKTELPIFYTFLVLLVAEHFWGTWGLIVGVPIFTFLLDVL 330


>gi|21958543|gb|AAM85307.1|AE013777_6 putative transport protein [Yersinia pestis KIM 10]
          Length = 361

 Score = 61.0 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 118/335 (35%), Gaps = 22/335 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +I+  +        P L A+ +     P+    + + +   T   ++    ++ L ++
Sbjct: 29  LVVIMAGIKAASPIVVPFLLAIFLAIVLNPL-VKLLERIKIPRTLAVILLVTIIILLMVL 87

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
               L                  N+    +P++   +   M   + +  H +   S+  +
Sbjct: 88  LFGRLGSSL--------------NEFARSLPQYRGMMLEKMRDLQEFALHFNIEFSVDDI 133

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +    +  ++F+ R  S          L ++ ++  LF   R  + +    D+      
Sbjct: 134 MKYVDPSMAMNFVTRLLSHLSGAMTSTFLLLMTVVFMLFEVERMPYKVQLMFDN------ 187

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
           P     I +     +    +  TII+I  G+V+       GV      G++  ++  IP 
Sbjct: 188 PEKGNAILKRALNGVTHYLVIKTIISIATGIVIWLFLAAMGVRFAFLWGLLAFVLNYIPN 247

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ ++     I  L+     +A  +     +   I    + P ++G  + L  L  F  
Sbjct: 248 IGSVLAAIPPIIQALLFNGFADAFAVTGGYILINLIGGNIIDPRMMGRGLGLSTLVVFLS 307

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+     +G +G+ +   L  +  ++ + +    +
Sbjct: 308 LIFWGWLLGPVGMLLSVPLTIIAKIVLELTPAGYR 342


>gi|317471118|ref|ZP_07930490.1| hypothetical protein HMPREF1011_00838 [Anaerostipes sp. 3_2_56FAA]
 gi|316901432|gb|EFV23374.1| hypothetical protein HMPREF1011_00838 [Anaerostipes sp. 3_2_56FAA]
          Length = 255

 Score = 61.0 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 68/197 (34%), Gaps = 6/197 (3%)

Query: 155 RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK----KISRIVPKV 210
            F + F+ +  ++    +   +   D   +      L   +FP           +    +
Sbjct: 48  NFSVSFVKWLFNLFIAFVVSIYMTADKQLLKSACRRLIFAVFPYDAAVPVIHGLKECHNI 107

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
                +G ++ ++  G +      L  +P  V + VI  +  MIP  G  I     +  L
Sbjct: 108 FSGYIIGKSLDSLIIGFLCFLLMSLLNLPYTVLISVIVGVTNMIPYFGPFIGAVPGAFIL 167

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            I         L +   ++ F     L P ++G    +  +   F +  G    G LG+F
Sbjct: 168 FIVSPYKTLIFLGMILVLQQFDG-LVLGPKILGNSTGVRPILILFSITVGGAYFGPLGMF 226

Query: 330 IGPVLMALIAVIWKESI 346
           +G    A++  +    +
Sbjct: 227 LGVPFFAVVQYLVNNWV 243


>gi|301154789|emb|CBW14252.1| predicted inner membrane protein [Haemophilus parainfluenzae T3T1]
          Length = 346

 Score = 61.0 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 59/346 (17%), Positives = 131/346 (37%), Gaps = 23/346 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M + +   + ++    + I+   +        P L AL I     P+  +   +K     
Sbjct: 1   MEKNLNFNRTVVAMAALVIVFAGIKLAAEIVVPFLLALFIAIICSPVIKAMTQRKVPHGI 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            +A++  + ++  F   L  L    + E    +       Q+ + +   ++D+       
Sbjct: 61  AIALLFILILIVFFF--LAGLINSSVQEFTRSIP------QYKVLLSERINDVMALAQKL 112

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +L          + I  E  ++      I  F SR  + F     ++  +I+A+ F   +
Sbjct: 113 KL---------PIVISREAIMEHFDPSVIMNFVSRLLLNFSGVVTNVFVLILAVIFMLLE 163

Query: 181 GFSISQQLDSLG---EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             ++  +L  +    EH   A    I RI+  VI S     T+I++  G+       + G
Sbjct: 164 APTMKHKLALVLSDNEHDVVAEEHHIDRILDGVI-SYLGVKTVISLLTGVSTWILLDITG 222

Query: 238 VPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           V   +    ++ ++  IP  G+ I+   + +  L+         + +   +   ++   +
Sbjct: 223 VQYAILWATLSFLLNYIPNIGSIIAAVPIIVQALLLNGFGVGMGVTVGIIVLNIVIGNII 282

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            P ++G  + L  L  FF L+     +G +G+ +  P+ MA    +
Sbjct: 283 EPKMMGKTLGLSTLVVFFSLLFWGWLLGTVGMLLSVPLTMAFKITL 328


>gi|282852361|ref|ZP_06261703.1| putative membrane protein [Lactobacillus gasseri 224-1]
 gi|282556103|gb|EFB61723.1| putative membrane protein [Lactobacillus gasseri 224-1]
          Length = 342

 Score = 61.0 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 52/357 (14%), Positives = 112/357 (31%), Gaps = 27/357 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST-F 61
           E       + R   + +I++ LY  +     +L   I  +    +      K     +  
Sbjct: 6   EKFKKNTNVHRLATLCLIILVLYAARSMMNTILLTFIFTYLIVHLIRFTQKKLPNLPSQV 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           + V+A + V+ +    +       + ++ ++   ++   Q                W ++
Sbjct: 66  IVVLAYLLVIAIIYFAITIYMPILIKQIVKMSHSLMEFYQSD-----------NMDWLTQ 114

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
               ++S  +           T     +               ++    +I  FF+  + 
Sbjct: 115 YLNHYISDSEI----------TTQAKHVVTILVHALTNVGTLTIAFFMSLIMSFFYTIEL 164

Query: 182 FSISQQ----LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            S+++     L+S                              IA+    +      +  
Sbjct: 165 DSMNEFSHTFLNSRHLSWLFKDIAYFGNKFVNTFGVVLEAQFFIALCNTAMTMICLIIMK 224

Query: 238 VPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           +P  +AL ++  I+++IP  G  IS   +S      G I     +F+   I   I    L
Sbjct: 225 MPQIIALCLMVFILSLIPVAGVIISLIPLSFVAYSVGGIRYVIYIFIVIMIIHAIEAYIL 284

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            P  +    +LP   TF  L+ G   +G  GL +G  +   +  I     +  K  +
Sbjct: 285 NPKFMSSKTELPIFYTFVVLLAGEHFLGTWGLIVGVPIFTFLLDILGVKSVKKKNQQ 341


>gi|229164384|ref|ZP_04292314.1| hypothetical protein bcere0009_51420 [Bacillus cereus R309803]
 gi|228619127|gb|EEK76023.1| hypothetical protein bcere0009_51420 [Bacillus cereus R309803]
          Length = 344

 Score = 61.0 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 1/153 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +   +   +          +IA+   ++   A W+ G P  + L ++  ++ +IP  G  
Sbjct: 188 EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVI 247

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS   + +     G I     + +   +   +    L P  +     LP   TF  L+  
Sbjct: 248 ISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFS 307

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              +G+ GL IG  +   +  +   +   ++++
Sbjct: 308 EHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 340


>gi|240140619|ref|YP_002965099.1| hypothetical protein MexAM1_META1p4181 [Methylobacterium extorquens
           AM1]
 gi|240010596|gb|ACS41822.1| conserved hypothetical protein; putative membrane protein
           [Methylobacterium extorquens AM1]
          Length = 651

 Score = 61.0 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/351 (11%), Positives = 106/351 (30%), Gaps = 16/351 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G++   +  +++ +LYF +  F P++ A+++ F   P+ +     +        ++A +
Sbjct: 23  RGLLTLAVGVVLVTALYFGREVFIPLVLAVLLSFVLAPVVNLLRRLRLG-RVPSVIVAVL 81

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-WL---SDIPGGMWASELWT 124
             + +       +         +L        +    +   WL   S I           
Sbjct: 82  LALAVIGGIGAVIGTQVAGLAGDLPQYQATVQKKFAGLQAGWLGNASRIFQRFNHQVHNA 141

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIP---------RFASRFGMIFLDYCLSIIFMIIALF 175
              +        +     T     +            A +     ++   ++  +++ + 
Sbjct: 142 TQKADAAGTAASTGPAGDTPKAQLVKVQEPDPSPFTLAEKVLGPIVEPLTTVGIVLVVVV 201

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F       +  ++  L                   + + FL    +    G ++G   W 
Sbjct: 202 FLLLQREDLRNRMIRLFGSGDLHRTTMAMDDAAGRLGTYFLAQLGMNATFGFIIGLGLWF 261

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL--FLWGAIELFIVD 293
            GVP+ +  GV +A+M  +P           + L    +   +  +   +   +   +  
Sbjct: 262 IGVPNPLLWGVFSALMRFVPYIGAFLSALFPLALAAAVDPGWSMVIATAILFLVVEPLFG 321

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             + P L G    L         +      G +GL +       + V+ + 
Sbjct: 322 HVIEPLLYGHSTGLSPFAVIVSTLFWGFLWGPIGLILATPFTVCLVVLGRH 372


>gi|49485787|ref|YP_043008.1| hypothetical protein SAS0881 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|49244230|emb|CAG42656.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           MSSA476]
          Length = 361

 Score = 61.0 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/330 (13%), Positives = 106/330 (32%), Gaps = 13/330 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P L +  + +   P  +S            A I T+ +    I+ L+  F   ++   
Sbjct: 41  FLPFLISGFLFYICLPFQNSLEKVGFPR---WASITTIMLALFAIIGLIVAFVAPIIISN 97

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
                                 +       E  T  +++         T + +N + +I 
Sbjct: 98  INNLISQTPALQKEAEQIIKFALAQMDKLPEDVTSRITNMVKSMGDGVTNILSNSLQYIT 157

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              S            +I +   L +  +D       +    +     ++  +   +   
Sbjct: 158 SLISTI--------FLLIMVPFFLIYMLKDHEKFIPAVAKFFKGERKVFFVDLLTDLNFT 209

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYL 269
           ++S   G   +++  G+ L   Y +  +P    L +   +  +IP  G+ +SF   +I L
Sbjct: 210 LKSYIQGQVTVSVILGIFLYIGYSIIDLPYIPLLVLFAGVANLIPFLGSWLSFAPAAI-L 268

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            I  +      + +   I   +    + P ++G  + +  L     ++      G   + 
Sbjct: 269 GIIDSPTTFIWVCIITLIAHQLEGNIITPNVMGKSLSIHPLTIIVVILAAGDLGGFTLVL 328

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISSN 359
           I   L A++  +        +   +K +SN
Sbjct: 329 IAVPLYAVLKTVVSNIFKYRQRIIDKANSN 358


>gi|220906944|ref|YP_002482255.1| hypothetical protein Cyan7425_1524 [Cyanothece sp. PCC 7425]
 gi|219863555|gb|ACL43894.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7425]
          Length = 354

 Score = 61.0 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 55/335 (16%), Positives = 108/335 (32%), Gaps = 22/335 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             II+  +            AL+I   + P+      +     T  A++ TV V+    +
Sbjct: 16  FVIIVAGMQAAASILNSFFLALLIAIATTPLLRWLRRR--GIPTGWALLLTVLVVVATGI 73

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            LL      + E+ ++             +P +   I     +S  +        +  + 
Sbjct: 74  TLLAFLGLSVSELLQI-------------LPTYEDRIASLRDSSNAFLTSKGINTAQALD 120

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            ++      +  I +F  R G    +  L I  +     F   +G     +L        
Sbjct: 121 LDSLQPGTLVKLIAQFLQRIGRAISESLLLIFIVA----FMLLEGMGFPLKLKKGLSP-- 174

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
            +          + IRS     T       +V      L GV   +  GV+  ++  IP 
Sbjct: 175 NSLLSNQFAAFAQRIRSYIWITTWTGGLTAIVDFLILSLLGVDLALLWGVLFFLLNFIPA 234

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G  ++        L++     +  +F    +   IVDK ++P  +   + L  L     
Sbjct: 235 VGFLLAVIPPMFLGLLEFGWGKSLQIFFLCWLVDNIVDKGIKPRFMQQSLDLSLLAIILS 294

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++     +G LG  +   L  +I  +  ES    +
Sbjct: 295 VIFWSWVLGPLGALLAIPLTMMIKTVILESSEQTR 329


>gi|170781212|ref|YP_001709544.1| putative integral membrane protein [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169155780|emb|CAQ00901.1| putative integral membrane protein [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 352

 Score = 61.0 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/347 (12%), Positives = 121/347 (34%), Gaps = 24/347 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS-----TFLAVIATVSVM 71
             +I  +L  L      V +A+ +     P+ +    K           FLA++ +++ +
Sbjct: 20  ALVIGGALVSLGTVLTYVGTAIFLALGIDPLVTFLERKGVPRPVAILVIFLALLGSLAGV 79

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L ++P++      ++      ++ V  +Q    +  ++              +      
Sbjct: 80  LLAVIPVVVNQASALVTQIVQYAQSVSGDQFIENLQSFVPR------------EVFDVQT 127

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
               L +     + +  I            ++   ++ ++I   +F     S    L  L
Sbjct: 128 GADQLVQYLSNASNVATITGNVLTVAFTIGNFLFGLVIVVILTMYFTASLNSFKSGLYKL 187

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                 A +  I+  + + +    +G   +A+  G++      + G         I  + 
Sbjct: 188 VPATRRARFADIAEQITQSVGRYVMGQVGLALCNGVLSFVYLSIVGAALPAVWAFIAFLF 247

Query: 252 AMIPG-----GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +++P      G+ +      + L    N +    + ++  + + I    L P ++   +K
Sbjct: 248 SLLPLVGTITGSALIVLGQIVLLPESMNTW--IAVAVYYLVYMQIEAYVLSPNIMNRAVK 305

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +P +      + G   +G+LG  I   + A + +I ++  + ++  +
Sbjct: 306 VPGVVVVIAALTGGTLLGVLGALIAVPVAAAVLLIIRQVAVPLQNER 352


>gi|158424592|ref|YP_001525884.1| putative permease [Azorhizobium caulinodans ORS 571]
 gi|158331481|dbj|BAF88966.1| putative permease [Azorhizobium caulinodans ORS 571]
          Length = 351

 Score = 61.0 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/299 (13%), Positives = 88/299 (29%), Gaps = 18/299 (6%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           + ++ + +        +A+++      +  +              +  + V  L  V   
Sbjct: 39  LFLAAWAISDVLLLAFAAILVAIGLHGLAGAVTRYTGCPPRAALAVVCLLVAGLLGVVAY 98

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
                   +++EL  ++  A                  W +     HL       +    
Sbjct: 99  LFGNIISAQVRELFHRLPAA------------------WETFQDEFHLRGMVDDLMRRAE 140

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
              T     +            +  + I  +++   +F        + L SL        
Sbjct: 141 AAATPSGATVLSAVRGVTSNIANVLVGIFLIVVGGLYFAMQPHFYRRLLISLFPPQHQDA 200

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             +    + + +R       I  I  GL+ G    + GVP+ +ALG+   +   +P   P
Sbjct: 201 AGRRVDGIGQSLRCFLQAQLIAMIVVGLLCGIGLAVLGVPAALALGLFAGLAEFVPMVGP 260

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           +     ++ L +   +       L   +   +    + P L    + LP   T F +V 
Sbjct: 261 VMAAIPALLLALTVGMETTFYTLLLFLVVQQVESNIISPLLQQELVSLPAAVTLFSVVA 319


>gi|71281300|ref|YP_269031.1| hypothetical protein CPS_2311 [Colwellia psychrerythraea 34H]
 gi|71147040|gb|AAZ27513.1| putative membrane protein [Colwellia psychrerythraea 34H]
          Length = 354

 Score = 61.0 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 51/315 (16%), Positives = 110/315 (34%), Gaps = 22/315 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +FII   +        P L ++ I     P+ +     K   +  +  +  V V      
Sbjct: 20  IFIIFAGIKTAANILVPFLLSVFIAIICNPLINKASEYKIPKAVSVIFVIVVFVTMAVF- 78

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L  L    + E+ + + +  +  +                W +     H     S  I+
Sbjct: 79  -LTGLVGSSLNELSQQIPQYRIQLKEQF------------TWLTSFLNSHDIQLSS-SIV 124

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           +E F     +       S FG +  +  L I+ ++  LF    +  +I  +L    +   
Sbjct: 125 TEYFDPAAAMGLAADMLSSFGSVMTNLFLIILTVVFMLF----ESSTIPHKLHLALDD-- 178

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
           P             +       T+++I  G ++    W+ G+   +  GV+  ++  IP 
Sbjct: 179 PQMRLNQIERFLSSVNQYIAIKTLVSIATGCIVSLMLWIFGLDFFLLWGVLAFLLNYIPN 238

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ I+        +++ +I  A  + L   +   ++   + P  +G  + L  L  F  
Sbjct: 239 IGSIIAAVPPMTLAILQLSIGEAGAIGLGFVLINMVMGNIIEPRYLGKGLGLSTLVVFLS 298

Query: 316 LVGGVRTMGLLGLFI 330
           L+     +G +G+ +
Sbjct: 299 LIFWGWLLGTVGMLL 313


>gi|114706310|ref|ZP_01439212.1| hypothetical protein FP2506_00960 [Fulvimarina pelagi HTCC2506]
 gi|114538171|gb|EAU41293.1| hypothetical protein FP2506_00960 [Fulvimarina pelagi HTCC2506]
          Length = 350

 Score = 61.0 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/343 (12%), Positives = 110/343 (32%), Gaps = 29/343 (8%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  L    ++  + + +I+ ++        P++ +  I  ++WPI     +         
Sbjct: 4   KPDLMRNRLLAVIAIILIVAAVKIGYPVLMPIVVSFCIIASAWPIKRW--ANHLGPPKLS 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL--SDIPGGMWAS 120
             I  V ++   ++    + Y      ++LV +             W   + +P      
Sbjct: 62  YAITVVVLIFGLLIFFGIVLYALSQVAQKLVERREEFEAVFESYSDWAKTNGLPVLPDEV 121

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             + + L+  + +               +    S  G++ +   L    +          
Sbjct: 122 GAFERVLAMSRMVLSD------------LYTVLSYIGVVSVIVILGFPEV---------- 159

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              ++ +     E        +    +   +RS     T+ ++  G+      +  G+  
Sbjct: 160 -PKLAYKFRQEYESKDNRAISETVTEMADSLRSYLAMTTLASLITGVASFIWAFALGLDL 218

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRP 298
            V  G++  ++  IP  G  I     ++Y  ++ G       +F        I+   + P
Sbjct: 219 AVIWGILNFLLNFIPVIGNIIGILPPTLYAFVQYGGWVMPLVVFSGFVALQLIISNFVYP 278

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L    + LP +     L+      G+ G  +   L A++ ++
Sbjct: 279 MLQSKGVSLPPITIILSLLFWGWIWGIAGGLLAVPLTAMLVIV 321


>gi|188580764|ref|YP_001924209.1| hypothetical protein Mpop_1508 [Methylobacterium populi BJ001]
 gi|179344262|gb|ACB79674.1| protein of unknown function UPF0118 [Methylobacterium populi BJ001]
          Length = 395

 Score = 61.0 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 66/202 (32%)

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
           A+   +   +   +I+ ++        D  S       L          ++     + +R
Sbjct: 193 AATVVIALFNALGNILVIVFLGIAIAADPGSYRDGALRLVPPRHREKGARVLDGAGETLR 252

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
               G  +      ++  +   L G+   + LG+   ++A +P   P+    V +   + 
Sbjct: 253 HWLFGQLVTMAAIFVLTWAGLSLLGIGGALILGLQAGLLAFVPTIGPLIAGVVIVLSSLA 312

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
             +                    L PF+    + LP    F G +      GL G+ +  
Sbjct: 313 SGLNGLLGALGVYLAVQTAESYGLTPFIQRRALDLPAATIFAGQLLLGVLFGLWGVALAL 372

Query: 333 VLMALIAVIWKESIMAIKENKE 354
            L+A+I V+ +E  +      E
Sbjct: 373 PLLAVIKVLLEELYIEDGAEAE 394


>gi|23011012|ref|ZP_00051509.1| COG0628: Predicted permease [Magnetospirillum magnetotacticum MS-1]
          Length = 384

 Score = 61.0 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 65/202 (32%)

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
           A+   +   +   +++ ++        D  S       L          ++     + +R
Sbjct: 182 AATVVIGLFNALGNLLVIVFLGVAIAADPGSYRDGALRLVPRRHREKGARVLDGSGETLR 241

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
               G  +      ++  +   + G+   + LG+   ++A +P   P+    V +   + 
Sbjct: 242 HWLFGQLVTMAAIFVLTWAGLSVLGIGGALILGLQAGLLAFVPTIGPLIAGVVIVLSSLA 301

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
                                  L PF+    + LP    F G +      GL G+ +  
Sbjct: 302 SGFNGLLGALGVYLAVQAAESYGLTPFIQRQALDLPAATIFAGQLLLGVLFGLWGVDLAL 361

Query: 333 VLMALIAVIWKESIMAIKENKE 354
            L+A+I V+ +E  +      E
Sbjct: 362 PLVAVIKVLLEELYIEDGAEAE 383


>gi|313105950|ref|ZP_07792212.1| hypothetical protein PA39016_000120037 [Pseudomonas aeruginosa
           39016]
 gi|310878714|gb|EFQ37308.1| hypothetical protein PA39016_000120037 [Pseudomonas aeruginosa
           39016]
          Length = 357

 Score = 61.0 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 56/359 (15%), Positives = 121/359 (33%), Gaps = 22/359 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+    + + ++  +++ +    +    G  APVL+A++I F    +       +     
Sbjct: 9   MQRYFSDEEAVVLAIMLVLGFSVILAFGGMLAPVLAAMVIAFLIQGVVGMLERFRVPH-- 66

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI---PVPRWLSDIPGGM 117
                       LF V L++  + G+L +  +V   +L  Q       +PR L +    +
Sbjct: 67  ------------LFAVWLVYSLFLGLLALFLVVLLPLLWQQLFTLFNELPRMLGEWQSVL 114

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
                    L   + +    ET     G    +    +     + ++  + ++ + I +F
Sbjct: 115 LMLPERYPSLISEEQVLKAIETARGEFGQIGQWALTSSLASLPVVVNVMIYLVLVPILVF 174

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           FF +D                    K++   + + I +   G  I  +  G V   A+  
Sbjct: 175 FFLKDKKRFHTWFHRYLPRERGL-MKQVWAEMNQQIANYIRGKVIEIVITGAVTYIAFAY 233

Query: 236 AGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIF-NATCLFLWGAIELFIVD 293
            G+     L ++  +  ++P  GA +    V++    +         L +  AI   +  
Sbjct: 234 LGLNYAALLALLVGLSVVVPYIGAVVVSVPVAMIAFFQWGWGDQFIYLMVAHAIIQALDG 293

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             L P L    + L  +     ++      G  G+F    L  L+  +       + E 
Sbjct: 294 NVLVPLLFSEAVNLHPVAIICAVLLFGGLWGFWGVFFAIPLATLVKAVLDAWPKDLPET 352


>gi|240138067|ref|YP_002962539.1| hypothetical protein MexAM1_META1p1400 [Methylobacterium extorquens
           AM1]
 gi|240008036|gb|ACS39262.1| conserved hypothetical protein, putative permease [Methylobacterium
           extorquens AM1]
          Length = 392

 Score = 61.0 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 65/202 (32%)

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
           A+   +   +   +++ ++        D  S       L          ++     + +R
Sbjct: 190 AATVVIALFNALGNVLVIVFLGVAIAADPGSYRDGALRLVPPRHREKGARVLDGSGETLR 249

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
               G  +      ++  +     G+   + LG+   ++A +P   P+    V +   + 
Sbjct: 250 HWLFGQLVTMAAIFVLTWAGLSFLGIGGALILGLQAGLLAFVPTIGPLIAGLVIVLSSLA 309

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
             +                    L PF+    + LP    F G +      GL G+ +  
Sbjct: 310 SGLNGLLGALGVYLAVQAAESYGLTPFIQRRALDLPAATIFAGQLLLGVLFGLWGVALAL 369

Query: 333 VLMALIAVIWKESIMAIKENKE 354
            L+A+I V+ +E  +      E
Sbjct: 370 PLVAVIKVLLEELYIEDGAEAE 391


>gi|16272290|ref|NP_438502.1| hypothetical protein HI0338 [Haemophilus influenzae Rd KW20]
 gi|260581196|ref|ZP_05849015.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
 gi|1176280|sp|P44646|Y338_HAEIN RecName: Full=UPF0118 membrane protein HI_0338
 gi|1573307|gb|AAC22000.1| conserved hypothetical transmembrane protein [Haemophilus
           influenzae Rd KW20]
 gi|260092121|gb|EEW76065.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
          Length = 348

 Score = 61.0 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 54/346 (15%), Positives = 121/346 (34%), Gaps = 23/346 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+  +   + ++    + IIL  +        P L +L I     PI  +   ++     
Sbjct: 1   MQNNLNLHRTLLGIAAVIIILAGVKLAAEIVVPFLLSLFIAIICSPIIKAMTQRRVPH-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +LA+     ++ L    L+ L      E               IP  + L          
Sbjct: 59  WLAITLLFVLISLVFFFLVGLINSTAREF-----------TQSIPQYKVLLSQRVSDLTG 107

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L   +L    S + + E F  +  ++F+ R    F  +  +  + ++ +I    F   +
Sbjct: 108 LLQRFNLPFTLSRETIQENFDPSIIMNFVSRVLLNFSGVVSNVFVLVLVVI----FMLAE 163

Query: 181 GFSISQQLDSLG---EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             ++  +   +     H      + I R++  VI    +     ++  G+ +        
Sbjct: 164 APTMKHKFAMVISSTPHDVAKEERHIDRVLQGVIGYLGIKSI-TSLLTGVGVFILLEACR 222

Query: 238 VPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           V   +    ++ ++  IP  G+ I+   + +  L+         + +       +V   +
Sbjct: 223 VQYAILWATLSFLLNYIPNIGSIIAAIPIIVQALLLNGFGIGFGVAIGVIAINMVVGNII 282

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            P ++G  + L  L  F  L+     +G +G+ +  P+ MAL   +
Sbjct: 283 EPKMMGQRLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMALKIAL 328


>gi|256849664|ref|ZP_05555096.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
 gi|256713780|gb|EEU28769.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
          Length = 344

 Score = 61.0 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 53/343 (15%), Positives = 114/343 (33%), Gaps = 27/343 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            N   + R++++ +I+  LY ++     VL   I  +    +         +  T L V 
Sbjct: 9   KNNIPLRRFVVLLLIIACLYEIRAMMNTVLLTFIFTYVIVHLIHLVQRYFPKIPTGLIVA 68

Query: 66  ATVSVMCLFIVPLLFL-FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            T  ++   +  ++ +     + ++ ++V  V+   +                  +   T
Sbjct: 69  VTYLIILALLYFVVTIYLPMLVGQISKMVKSVMAFYESN-----------ESSRLASHVT 117

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +++S  + +               +  FA      F    ++    +I  FF+  +   +
Sbjct: 118 RYISKGEIVTQ----------AKRVGTFALHTVTNFGSLTIATFMSLILSFFYTIELDRM 167

Query: 185 SQQ----LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
            +     + S          +   +               IAI    +         +P 
Sbjct: 168 IEFSKLFVKSGYFKWLFEDIRYFGKKFTNTFGVVLEAQFFIAICNTALTMIGLAFMHMPQ 227

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +ALG++  I++++P  G  IS   +SI     G I     +F+   I   I    L P 
Sbjct: 228 IIALGLMVFILSLVPVAGVIISLIPLSIIGYSVGGIRYVIYIFIMIMIIHAIEAYVLNPK 287

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            +    +LP   TF  L+      G  GL +G  +   +  + 
Sbjct: 288 FMASKTELPIFYTFLVLLVAEHFWGTWGLIVGVPIFTFLLDVL 330


>gi|269123406|ref|YP_003305983.1| sporulation integral membrane protein YtvI [Streptobacillus
           moniliformis DSM 12112]
 gi|268314732|gb|ACZ01106.1| sporulation integral membrane protein YtvI [Streptobacillus
           moniliformis DSM 12112]
          Length = 367

 Score = 61.0 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 51/354 (14%), Positives = 119/354 (33%), Gaps = 10/354 (2%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKG-FFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +E  L     + +MI  I++  + F    +  P + A I+   +    +  ++K   S+ 
Sbjct: 5   QEFTLKRFLPLIYMITVILIALIAFKASLYLLPFVIAFIVVTITRGPVNFLVNKFNFSNR 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              +I  +    +  V L+ L      E+  L + ++        +   L +     +  
Sbjct: 65  MSNIIVILLFYLIIPVILILLLIRSYNEIYNLSNWLIKNANAFKNIGFELFE--KYNFLE 122

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +       P    I       TN    I  +     +      + +I  I A F    D
Sbjct: 123 GILPSVAIIPIKNFITMLLGKLTNLGFLIANYVLSLTLKLPVLFVHVIITITATFLMAGD 182

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV-- 238
             ++    +     ++   +++I   + +V         I+       L     +  +  
Sbjct: 183 IETVHNFFEKQFPKVWLEKFRQIKVNIVEVAYQYLRAQLILVSLCFTELIIGLSIINIFV 242

Query: 239 ---PSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
                     ++ A+   +P  GA       + Y  + GN      +       + +   
Sbjct: 243 KPISYVFLTSMLIALFDALPIFGAGGILLPWAAYCFLTGNYLLGISILFLYVFIVTM-RM 301

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           T  P ++   + +  L +   L  G +  G++G   GP+++ ++ +++KE I  
Sbjct: 302 TFEPRILSKSLSINPLLSLISLFVGFKVFGVVGFLFGPIILTIMIILFKEEINK 355


>gi|218529762|ref|YP_002420578.1| hypothetical protein Mchl_1787 [Methylobacterium chloromethanicum
           CM4]
 gi|218522065|gb|ACK82650.1| protein of unknown function UPF0118 [Methylobacterium
           chloromethanicum CM4]
          Length = 392

 Score = 61.0 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 65/202 (32%)

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
           A+   +   +   +++ ++        D  S       L          ++     + +R
Sbjct: 190 AATVVIALFNALGNVLVIVFLGVAIAADPGSYRDGALRLVPPRHREKGARVLDGSGETLR 249

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
               G  +      ++  +     G+   + LG+   ++A +P   P+    V +   + 
Sbjct: 250 HWLFGQLVTMAAIFVLTWAGLSFLGIGGALILGLQAGLLAFVPTIGPLIAGLVIVLSSLA 309

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
             +                    L PF+    + LP    F G +      GL G+ +  
Sbjct: 310 SGLNGLLGALGVYLAVQAAESYGLTPFIQRRALDLPAATIFAGQLLLGVLFGLWGVALAL 369

Query: 333 VLMALIAVIWKESIMAIKENKE 354
            L+A+I V+ +E  +      E
Sbjct: 370 PLVAVIKVLLEELYIEDGAEAE 391


>gi|254560627|ref|YP_003067722.1| hypothetical protein METDI2170 [Methylobacterium extorquens DM4]
 gi|254267905|emb|CAX23771.1| conserved hypothetical protein, putative permease [Methylobacterium
           extorquens DM4]
          Length = 390

 Score = 61.0 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 65/202 (32%)

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
           A+   +   +   +++ ++        D  S       L          ++     + +R
Sbjct: 188 AATVVIALFNALGNVLVIVFLGVAIAADPGSYRDGALRLVPPRHREKGARVLDGSGETLR 247

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
               G  +      ++  +     G+   + LG+   ++A +P   P+    V +   + 
Sbjct: 248 HWLFGQLVTMAAIFVLTWAGLSFLGIGGALILGLQAGLLAFVPTIGPLIAGVVIVLSSLA 307

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
             +                    L PF+    + LP    F G +      GL G+ +  
Sbjct: 308 SGLNGLLGALGVYLAVQAAESYGLTPFIQRRALDLPAATIFAGQLLLGVLFGLWGVALAL 367

Query: 333 VLMALIAVIWKESIMAIKENKE 354
            L+A+I V+ +E  +      E
Sbjct: 368 PLVAVIKVLLEELYIEDGAEAE 389


>gi|118474515|ref|YP_892768.1| transport protein [Campylobacter fetus subsp. fetus 82-40]
 gi|118413741|gb|ABK82161.1| transport protein [Campylobacter fetus subsp. fetus 82-40]
          Length = 336

 Score = 61.0 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 51/339 (15%), Positives = 109/339 (32%), Gaps = 23/339 (6%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M     ++      II   L        P   A+ I     P+       K         
Sbjct: 1   MKYQLTLISIASFVIIATGLAAASAIVVPFFLAVFIAIAISPVLEFMQRLKIRR-----T 55

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           I+ + ++ +FI  L FL          +VS  +      +P  +    I        L  
Sbjct: 56  ISFILLIAIFIGILWFLG--------NVVSSALNGFSSSLPEYQMQFRIFIDKTVEWL-- 105

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
               +   +  ++   L++   + I    S       +       + + + F   +    
Sbjct: 106 ----NSYEIIKINSFVLESIDTNKIFSTTSTILRQTSEIVTKSFLVFLLVVFMLVETQVF 161

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             +++   +         I+      ++      TI +I  GL+L       GVP     
Sbjct: 162 KDKVEYFAKK--HMSMHNIANSFISNLKKYLAIKTISSIATGLILWLFLVYFGVPYAPLW 219

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            V+  I   IP  G+ I+     +  L+  ++ +   L +   +    +   + P  +G 
Sbjct: 220 AVLAFIFNYIPTIGSIIAAIPAILMSLLVNDLSDTLWLSIIYLVVNISIGNFIEPKFLGA 279

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            + +  L     L+     +G+ G+F+  P+ M++   +
Sbjct: 280 GLGISTLVVILSLLFWGFLLGIGGMFLAVPLTMSIKIAL 318


>gi|293381781|ref|ZP_06627756.1| conserved hypothetical protein [Lactobacillus crispatus 214-1]
 gi|290921651|gb|EFD98678.1| conserved hypothetical protein [Lactobacillus crispatus 214-1]
          Length = 344

 Score = 60.6 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 114/343 (33%), Gaps = 27/343 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            N   + R++++ +I+  LY ++     VL   I  +    +         +  T L V 
Sbjct: 9   KNNIPLRRFVVLLLIIACLYEIRTMMNTVLLTFIFTYVIVHLIHLVQRYFPKIPTGLIVA 68

Query: 66  ATVSVMCLFIVPLLFL-FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            T  ++   +  ++ +     + ++ ++V  V+   +                  +   T
Sbjct: 69  VTYLIILALLYFVVTIYLPMLVGQISKMVKSVMAFYESN-----------ESSRLASHVT 117

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +++S  + +               +  FA      F    ++    +I  FF+  +   +
Sbjct: 118 RYISKGEIVTQ----------AKRVGTFALHTVTNFGSLTIATFMSLILSFFYTIELDRM 167

Query: 185 SQQ----LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
            +     + S          +   +               IAI    +         +P 
Sbjct: 168 IEFSKLFVKSGYFKWLFEDIRYFGKKFTNTFGVVLEAQFFIAICNTALTMIGLAFMHMPQ 227

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +ALG++  I++++P  G  IS   +SI     G I     +F+   I   I    L P 
Sbjct: 228 IIALGLMVFILSLVPVAGVIISLIPLSIIGYSVGGIRYVIYIFIMIMIIHAIEAYVLNPK 287

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            +    ++P   TF  L+      G  GL +G  +   +  + 
Sbjct: 288 FMASKTEVPIFYTFLVLLVAEHFWGTWGLIVGVPIFTFLLDVL 330


>gi|295699585|ref|YP_003607478.1| hypothetical protein BC1002_3959 [Burkholderia sp. CCGE1002]
 gi|295438798|gb|ADG17967.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1002]
          Length = 657

 Score = 60.6 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/328 (11%), Positives = 101/328 (30%), Gaps = 16/328 (4%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES------STFLAVIATVSVM 71
            +++ +LYF +    P+  ++++ F   P+                 +   A+ + +++ 
Sbjct: 33  VVVVCALYFGREVLIPITLSVLLSFLLAPLVQMLRRLHMGQLPSIFIAVLFALASLLAIG 92

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL---- 127
            L    L+ L        + +  K+    +  +     L             ++      
Sbjct: 93  ALIGAQLVQLANALPQYQEAIEQKIETVQEKTVGRADSLMSSAASALQRMAPSRPAPPRP 152

Query: 128 ---SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
              +   + ++  +  +       +                + I +++ +F   +    +
Sbjct: 153 TGRAARNAPQVPQQVEVHEPAPTPVQLAQRALTPAIAPIETTFIVLVVTIFILLQR-EDL 211

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             +L SL                   +   F+    + +  G ++     + GVP  +  
Sbjct: 212 RDRLISLFGSRDLHRTTTAINDAAGRLSRYFVAQLGVNLSAGGIIAIGLAIIGVPGALLF 271

Query: 245 GVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           GVI A++  +P         ++++L   I+     A    +   +   +  +   P L G
Sbjct: 272 GVIAALLRFVPYIGIWIAAILAVFLAAAIQPQWTMAVLTLILFIVVDVVAGQIAEPLLYG 331

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
               L  L      +      G +GL +
Sbjct: 332 HRSGLSPLAVVVAAIFWSWLWGPVGLVL 359


>gi|254784901|ref|YP_003072329.1| hypothetical protein TERTU_0707 [Teredinibacter turnerae T7901]
 gi|237683572|gb|ACR10836.1| conserved domain protein [Teredinibacter turnerae T7901]
          Length = 357

 Score = 60.6 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 101/313 (32%), Gaps = 23/313 (7%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L +L I     P       K      +LA++  V+ + +  V +  +    + + +
Sbjct: 31  LVPFLLSLFIAVICTPPLMWLKGK--GLPGWLAMLIVVANVVVLGVLIGIVVGAAISDFR 88

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
                          +P + + +             L        +  +F     +    
Sbjct: 89  A-------------DLPLYQARLSDLTGGLITRLSELGLHVDPTQIRSSFNPAAALSLAG 135

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              +  G +  +  L ++ ++  L      G  +                 K        
Sbjct: 136 NTLASLGNLMTNAFLILLTVVFIL------GEEVGFSDKLQSSSRNSQKTIKAINQFSAG 189

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
           +        +++   G ++    W+ GV   V  G++  ++  +P  G+ ++     +  
Sbjct: 190 VNRYMAIKALMSFLTGTLILIWLWILGVDYFVLWGLLAFLLNFVPTLGSILAAVPAVLLA 249

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           +++  + +A    L   I  F V   + P ++G  + L  L  F  LV     +G +G+ 
Sbjct: 250 VVQLGVGDAVLTGLGFLIVNFGVGNIIEPRMMGKGLDLSTLVVFLSLVFWGWVLGPVGML 309

Query: 330 IG-PVLMALIAVI 341
           +  P+ M +   +
Sbjct: 310 LSIPLTMTVKIAL 322


>gi|163853214|ref|YP_001641257.1| hypothetical protein Mext_3812 [Methylobacterium extorquens PA1]
 gi|163664819|gb|ABY32186.1| protein of unknown function UPF0118 [Methylobacterium extorquens
           PA1]
          Length = 651

 Score = 60.6 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/351 (11%), Positives = 106/351 (30%), Gaps = 16/351 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G++   +  +++ +LYF +  F P++ A+++ F   P+ +     +        ++A +
Sbjct: 23  RGLLTLAVGVVLVTALYFGREVFIPLVLAVLLSFVLAPVVNLLRRLRLG-RVPSVIVAVL 81

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-WL---SDIPGGMWASELWT 124
             + +       +         +L        +    +   WL   S I           
Sbjct: 82  LALTVIGGIGAVIGTQVAGLAGDLPQYQATVQKKFAGLQAGWLGNASRIFQRFNHQVHNA 141

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIP---------RFASRFGMIFLDYCLSIIFMIIALF 175
              +        +     T     +            A +     ++   ++  +++ + 
Sbjct: 142 TQKADAAGTAASTGPAGDTPKAQLVKVQEPDPSPFTLAEKVLGPIVEPLTTVGIVLVVVV 201

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F       +  ++  L                   + + FL    +    G ++G   W 
Sbjct: 202 FLLLQREDLRNRMIRLFGSGDLHRTTMAMDDAAGRLGTYFLAQLGMNATFGFIIGLGLWF 261

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL--FLWGAIELFIVD 293
            GVP+ +  GV +A+M  +P           + L    +   +  +   +   +   +  
Sbjct: 262 IGVPNPLLWGVFSALMRFVPYIGAFLSALFPLALAAAVDPGWSMVIATAILFLVVEPLFG 321

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             + P L G    L         +      G +GL +       + V+ + 
Sbjct: 322 HVIEPLLYGHSTGLSPFAVIVSTLFWGFLWGPIGLILATPFTVCLVVLGRH 372


>gi|317122062|ref|YP_004102065.1| hypothetical protein Tmar_1225 [Thermaerobacter marianensis DSM
           12885]
 gi|315592042|gb|ADU51338.1| protein of unknown function UPF0118 [Thermaerobacter marianensis
           DSM 12885]
          Length = 488

 Score = 60.6 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 68/184 (36%), Gaps = 4/184 (2%)

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
           +  F+   D   + +             W ++ R V +V+     G  ++A   G ++ +
Sbjct: 162 VMAFYLLNDLPRLRRWARERLGRGRRRRWLELVRAVDQVVGGFIRGQLLVAGFVGFMVTA 221

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
                G+   V LG + A+  +IP   PI      + +    +   A  + L   +  ++
Sbjct: 222 VATFFGLRFAVLLGALAALADLIPYFGPIIGAVPVVAMAALQSPATAVKVALALLLIQWV 281

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI----WKESIM 347
            +  L P ++G  + +  L     L+      GL GL     +  L+ V+    W E + 
Sbjct: 282 ENSVLSPRILGQRVGVHPLVVIGALLVAGHHFGLAGLLFAVPVAGLVHVLLAFAWPEWVG 341

Query: 348 AIKE 351
            I  
Sbjct: 342 GIGR 345


>gi|256028129|ref|ZP_05441963.1| permease [Fusobacterium sp. D11]
          Length = 363

 Score = 60.6 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 55/331 (16%), Positives = 129/331 (38%), Gaps = 8/331 (2%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           KG+F  ++ A+ I     PI      K + +      ++ V V+ + ++  L +    + 
Sbjct: 37  KGYFMTLIMAIFIAILLEPIKKYLKKKSKINDVLAISLSIVFVVLIVVIISLIVIPEIIS 96

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            +K L       ++  + + + +++         + TK L    +  I + T   +N  +
Sbjct: 97  SLKVLNDIYPAISEKVLTIGKDVTNYLAEKNIYTVDTKELDDYFTKFISNNT---SNIKE 153

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP----AYWKKI 203
           F+  F        L +  ++I      F    D  ++ + L++L   +F      Y    
Sbjct: 154 FVLAFIGGLVNWTLGFT-NLIVAFTLAFLILLDKKNLMKTLENLIIIIFGVKNTPYVMNK 212

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
            ++   +  S   G  I++   GL +     + G P      ++  +  MIP    I   
Sbjct: 213 LKLSKDIFISYISGKIIVSFIVGLCVYIILLITGTPYAALSAILLGVGNMIPYVGSILGG 272

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
            V+ +L++         L +  AI   +    + P ++G  + L        ++      
Sbjct: 273 IVAFFLILLVAPIKTLILLIAIAIAQLVDGFIVGPKIIGDKVGLSTFWVMVSMIIFGNLF 332

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           GL+G+F+G  ++++I + + + + A +  ++
Sbjct: 333 GLVGMFLGTPILSIIRLFYIDLLKAKQGGEQ 363


>gi|256848585|ref|ZP_05554026.1| permease [Lactobacillus coleohominis 101-4-CHN]
 gi|256714637|gb|EEU29617.1| permease [Lactobacillus coleohominis 101-4-CHN]
          Length = 346

 Score = 60.6 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/349 (12%), Positives = 112/349 (32%), Gaps = 17/349 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           + R +++ +++  LY  +G    +L   I  +         +        ++  +    +
Sbjct: 14  LHRTVVLLMLIAVLYVARGMMNTILLTFIFTYL-------IVHWIRLVQRWIPKLPVTVI 66

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +  + L++  YY + +   ++            + + +  +       ++        
Sbjct: 67  VLVTYILLIWGIYYVVTDYLPMIIN---------ELVKMVDSLIKFYQGDDMKWFMRYVN 117

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           + +   +      +G+ F     +R G + +   +S+I          +      Q L++
Sbjct: 118 RYVSTATIIEQAKHGMSFAVDTLTRIGTLTISLFMSLILSFFYTIELKQMNEFSHQFLET 177

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +          +               IAI    +         +P   ALG++  I
Sbjct: 178 KYLNWLFGDIYYFGKTFVNTFGVVLEAQFFIAICNTALTMICLSFMKMPQIFALGLMVFI 237

Query: 251 MAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++++P  G  IS   + +     G I +   + +   +   +    L P  +    +LP 
Sbjct: 238 LSLVPVAGVIISLIPLCLVGYQSGGIRDVIYIIIMIMVIHALEAYVLNPKFMSSRTELPI 297

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             TF  L+      G  GL +G  +   +  I+    +        I  
Sbjct: 298 FYTFVVLLVAEHLWGTWGLIVGVPVFTFLLDIFGVKSVQRHRGPRSIRE 346


>gi|307707519|ref|ZP_07644001.1| putative permease [Streptococcus mitis NCTC 12261]
 gi|307616471|gb|EFN95662.1| putative permease [Streptococcus mitis NCTC 12261]
          Length = 172

 Score = 60.6 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 66/170 (38%)

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           S+ L  +           I ++  +      +   I A+  G+++   Y L G+P  V  
Sbjct: 3   SRLLKVIFPEKVVTKLTYIGQVALETYDQFLMSQLIEAVIIGVMIAVGYSLFGLPYGVMT 62

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           G+   +++ IP   P+    V    +   +   A    L   +   I    + P +VG  
Sbjct: 63  GIFAGVLSFIPYVGPMIACVVGAIFIFTVSPTQALLSLLLYQVIQLIEGNLIYPRVVGQS 122

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           I LP + T      G    GLLG+     + A+I  + KE ++A +   +
Sbjct: 123 IGLPAIFTLAAASIGGNLFGLLGMIFFTPIFAVIYRLVKEFVVAKENQLD 172


>gi|323357875|ref|YP_004224271.1| permease [Microbacterium testaceum StLB037]
 gi|323274246|dbj|BAJ74391.1| predicted permease [Microbacterium testaceum StLB037]
          Length = 408

 Score = 60.6 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/282 (12%), Positives = 90/282 (31%), Gaps = 12/282 (4%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           +  AL +     P+    + +   S  +  VI    +  +    L  L    + ++++ V
Sbjct: 98  IAIALFVALALDPLVRMLVRR-GISRAWSIVIVFGGLAVILAAALWLLIPPVVRQVEQFV 156

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT-NGIDFIPRF 152
             +          P +++D+        + +        +    ++F+     I  I   
Sbjct: 157 GDI----------PTFVNDLIDSDAVRWVESNFGDSLAGVLKEVQSFVTNPTNIAAIGGG 206

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
             + G+    +    I +++   +F      +   L  L      A    ++  +   + 
Sbjct: 207 LLQVGITIGTFISGAIIVLVLSLYFLAALPKMKNSLVRLTPARSRATVSDMTGQITDSVG 266

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
               GM ++A+   +       +   P    L  +   + +IP    + F AV+    + 
Sbjct: 267 GYLAGMVVLALCNAVFAFIVLTILQQPFAALLAALAFGITLIPLVGSVLFWAVATVFTLI 326

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
            +  +     +   + + I    L P ++   I +P      
Sbjct: 327 VSPTSGLIFAIAYLVYMQIEAYLLTPRVMNRTISVPGSLVVI 368


>gi|260587510|ref|ZP_05853423.1| conserved hypothetical protein [Blautia hansenii DSM 20583]
 gi|260541775|gb|EEX22344.1| conserved hypothetical protein [Blautia hansenii DSM 20583]
          Length = 346

 Score = 60.6 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 55/330 (16%), Positives = 107/330 (32%), Gaps = 11/330 (3%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           + + + ++     P     I+             K+      L+   T   M   I+ +L
Sbjct: 16  VFLGMKYVFPVILPFFLGWILAEAVHVPAKRICEKQTSKKLHLS--ETALGMIFIILGVL 73

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
                 +  ++ L  K+    Q+   +     DI   +         +S  +S   +S  
Sbjct: 74  LAVLSVLFTLQYLTGKLGECVQYYPELKEEAQDILWKLCLGIERLTGISADKSCFYISRQ 133

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSII----FMIIALFFFYRDGFSISQQLDSLGEHL 195
                   F  + +    ++ +  C+  +      I+    F ++   +   L+      
Sbjct: 134 AELFLRCIFSGKNSMNTAVVSVKGCVCFVGILAICIVFAILFLQERERVYASLEKWKIF- 192

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                  I R +   I++       I     L+     W   V  +V  GV   +    P
Sbjct: 193 --GNLIHIIREMAAGIKAYLKAQFKIIFVVCLLCVGGLWALKVRHYVGFGVAIGMFDAFP 250

Query: 256 G-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G        ++ + ++G I  +  L +   +    V + L P L+G  + +  L    
Sbjct: 251 VLGTGTFLIPGALLMFLQGKIKMSIGLLVLY-LLTAAVRQFLEPRLIGNHVGVSPLLVLV 309

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +  GV   G  G  +GPV   LI VI KE
Sbjct: 310 SVYLGVVLYGGFGFVLGPVSAFLIYVILKE 339


>gi|313888147|ref|ZP_07821821.1| putative membrane protein [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845837|gb|EFR33224.1| putative membrane protein [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 427

 Score = 60.6 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 59/156 (37%)

Query: 159 IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
            FL     ++ +II  F+F  D      ++     +        ++R +   ++    G 
Sbjct: 230 GFLTSAFRLVLIIIFSFYFSVDKERFMLRVKKAIPNKHREDISYLTRNIDIALQQFIRGR 289

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA 278
            ++AI  GL+      +  V   + +G+IT +  +IP   P    A ++      +   A
Sbjct: 290 MLMAIFVGLLTMVYLLVLRVDFAIIIGLITCVADIIPFIGPFLGCAPAVLFAFMDSPMKA 349

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             + +   I  ++ +  L P L+G    L  L    
Sbjct: 350 LWVLILFVIVQWVENNILAPKLIGDSTGLNPLVILI 385


>gi|307544324|ref|YP_003896803.1| hypothetical protein HELO_1734 [Halomonas elongata DSM 2581]
 gi|307216348|emb|CBV41618.1| conserved hypothetical protein [Halomonas elongata DSM 2581]
          Length = 371

 Score = 60.6 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 96/282 (34%), Gaps = 25/282 (8%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
            I    + P+   ++ +          +       + I   + L    ++       + +
Sbjct: 45  FIAVVCTAPVQ--WLHRLGLGQRLAVWLT-----LIVIGGFISLLGILLVNSFGTFVEAL 97

Query: 98  LANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFG 157
              +  +   ++   I  G+        +L        LS+ F      D+IP    + G
Sbjct: 98  PGIEEKLY--QYYLGILEGL-------ANLGLAIDTGWLSDLFDADKFGDWIPALLGQVG 148

Query: 158 MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG 217
            + +   +  + ++  LF        +S+ L +    L      +  +     ++     
Sbjct: 149 NLMMQSVVVALLVMFLLFETLNFRDKLSRALANPAPSL------RRFQEFSMTLKRYLAV 202

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIK--GN 274
            T++++  G ++  A  L GV   +   V+   +  IP  G+ I+     + LL+   G 
Sbjct: 203 KTLVSLATGALIWVACQLVGVEFPLLWAVLAFALNYIPNIGSAIAAVPPVLLLLVSPDGG 262

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           +F A  L        F++   + P ++G  + L     F  L
Sbjct: 263 LFKALILSGAYLGVNFVLGNLIEPRVMGRALGLSTFVAFLSL 304


>gi|309775355|ref|ZP_07670360.1| hypothetical protein HMPREF0983_00859 [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308916872|gb|EFP62607.1| hypothetical protein HMPREF0983_00859 [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 291

 Score = 60.6 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/287 (13%), Positives = 104/287 (36%), Gaps = 18/287 (6%)

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++VM ++I   L L  + +  +  +  +V+        +P W+  +           ++ 
Sbjct: 1   MAVMLVYIGIALLLAVFVIGMIPIIYRQVMD---FAAVLPVWMKHL------EAFLDRYH 51

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +L  L E +L+   I  I           +    +     I  FF   D     + 
Sbjct: 52  IAIGNLDTLKEKYLQEGYIIVIDSL-----RSTMSTATNYGIAYITAFFISIDLDFWKRT 106

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              +  +L    +      +  ++    +G  +  +   + +G   +L   P+ +   VI
Sbjct: 107 AKKVIPNL--HQFSTFYLTMSNIVYQYLVGTFLDMLFIVVSVGITLYLFAFPNALLYAVI 164

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A++ + P  GA      ++I   +   +F      +   I+  +    ++P +    + 
Sbjct: 165 LALLNLFPYVGATFGLILIAIVGALSYPVFPFLAFAIVWTIQQ-VESNFIQPMIFNRTMN 223

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +  + TF  +       G++G+ + P+  A+  + ++  + A   ++
Sbjct: 224 VRPILTFVFIFISEAFFGVVGVILSPIFAAIAQIAFRSWLHAKTSDR 270


>gi|47093861|ref|ZP_00231604.1| membrane protein, putative [Listeria monocytogenes str. 4b H7858]
 gi|47017770|gb|EAL08560.1| membrane protein, putative [Listeria monocytogenes str. 4b H7858]
          Length = 317

 Score = 60.6 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/314 (15%), Positives = 102/314 (32%), Gaps = 25/314 (7%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           +L   I  F    + +  + +       + ++    V     V ++      + ++ +LV
Sbjct: 5   ILLTFIFAFLVTRLENVILKRVRVPRKLIVIVLYSLVAVFLYVAIVHFLPILINQISQLV 64

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             +V    +  P    +     G        K+L                 G+DFI    
Sbjct: 65  DSLVKLYNN--PSDNTIVKWIVGFLKESNIQKYLQ---------------AGVDFIIASL 107

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK---ISRIVPKV 210
           S  G + L + L++I  +    FF  +   ++              +K+     +     
Sbjct: 108 SGIGSVGLSFFLALILSL----FFSLEKERVTSFTGQFMTSKVGFIFKEAAFFGKKFVST 163

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAVSIYL 269
                    +IA+    +   A +L   P  ++L ++  ++ +IP    I     + +  
Sbjct: 164 FGVVLEAQLMIALVNTFITTIALYLMDFPQLLSLSIMVFVLGLIPVAGVIISCIPLVLIA 223

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
              G   +   + +   I   I    L P L+     LP   TF  L+      G+ GL 
Sbjct: 224 YSVGGFQDVVYILITVVIVHAIETYILNPKLMSSKTNLPVFYTFIILIFSETFFGVWGLI 283

Query: 330 IGPVLMALIAVIWK 343
           +G  +   +  I +
Sbjct: 284 VGIPVFVFLLDILE 297


>gi|238853025|ref|ZP_04643420.1| transport protein [Lactobacillus gasseri 202-4]
 gi|238834363|gb|EEQ26605.1| transport protein [Lactobacillus gasseri 202-4]
          Length = 349

 Score = 60.6 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 50/342 (14%), Positives = 108/342 (31%), Gaps = 19/342 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST-F 61
           E       + R   + +I++ LY  +     +L   I  +    +      K     +  
Sbjct: 6   EKFKKNTNVHRLATLCLIILVLYAARSMMNTILLTFIFTYLIVHLIRFTQKKLPNLPSQV 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           + V+A + V+ +    +       + ++ ++   ++   Q                W ++
Sbjct: 66  IVVLAYLLVIAIIYFAITIYMPILIKQIVKMSHSLMEFYQSD-----------NMDWLTQ 114

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
               ++S  +            +G+  +    +  G + + + +S+I             
Sbjct: 115 YLNHYISDSEITTQ------AKHGVTILVHALTNVGTLTIAFFMSLIMSFFYTIELDSMN 168

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
                 L+S                              IA+    +      +  +P  
Sbjct: 169 EFSHTFLNSRHLSWLFKDIAYFGNKFVNTFGVVLEAQFFIALCNTAMTMICLIIMKMPQI 228

Query: 242 VALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +AL ++  I+++IP  G  IS   +S      G I     +F+   I   I    L P  
Sbjct: 229 IALCLMVFILSLIPVAGVIISLIPLSFVAYSVGGIRYVIYIFIVIMIIHAIEAYILNPKF 288

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +    +LP   TF  L+ G   +G  GL +G  +   +  I 
Sbjct: 289 MSSKTELPIFYTFVVLLAGEHFLGTWGLIVGVPIFTFLLDIL 330


>gi|229112851|ref|ZP_04242383.1| hypothetical protein bcere0018_50890 [Bacillus cereus Rock1-15]
 gi|229147982|ref|ZP_04276322.1| hypothetical protein bcere0012_51040 [Bacillus cereus BDRD-ST24]
 gi|228635477|gb|EEK91967.1| hypothetical protein bcere0012_51040 [Bacillus cereus BDRD-ST24]
 gi|228670685|gb|EEL25997.1| hypothetical protein bcere0018_50890 [Bacillus cereus Rock1-15]
          Length = 324

 Score = 60.6 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 1/153 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +   +   +          +IA+   ++   A W+ G P  + L ++  ++ +IP  G  
Sbjct: 165 EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVI 224

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS   + +     G I     + +   +   +    L P  +     LP   TF  L+  
Sbjct: 225 ISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFS 284

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              +G+ GL IG  +   +  +   +   ++++
Sbjct: 285 EHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 317


>gi|254448016|ref|ZP_05061480.1| permease, putative [gamma proteobacterium HTCC5015]
 gi|198262442|gb|EDY86723.1| permease, putative [gamma proteobacterium HTCC5015]
          Length = 352

 Score = 60.6 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/343 (10%), Positives = 117/343 (34%), Gaps = 13/343 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           +  I  +  + ++     ++ A+       P+ +  +     +      +  + ++ L +
Sbjct: 21  LCLITALLAWLIRPLILHIVFAVSWYILLHPVTARLVHW-GFTPNAAVGLVLLGLLILSV 79

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +         + ++ +L + +      G                S+ +++    P S+++
Sbjct: 80  LSGALFLPLVLEQLSQLQTNLPNMLDQGQQ---------WLDQVSQRFSQQFGLPLSVEV 130

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           LS+  +             +   + L      + + +  +F  RD  S+   +     + 
Sbjct: 131 LSKPLVDWASGGS-KNALLQVSNMALTLVSLALIVPLLAYFLLRDYRSLRNHVMQWVPNS 189

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                  I   V   ++    G+ + +    L+  + +   G+   V LG++T ++ +IP
Sbjct: 190 QFELAWLIYYRVAHQLQDYVRGVLVQSGIMALITTTGFAFFGIEMAVLLGLLTGLLNIIP 249

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK-TLRPFLVGGPIKLPFLPTF 313
             G  ++     + ++  G   +     +   +   +VD   + P  +     L  L   
Sbjct: 250 YLGPILAMIPPCLIVIGSGADPSLALAAIGVILFAQLVDNTVVVPAFIANVADLHPLVVI 309

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            G+       G +G+ +    +    +++   +  ++  +  +
Sbjct: 310 LGVAIFGHFFGFIGMVLAIPALFSAKILFSGLVQGMQYRQNPV 352


>gi|220908661|ref|YP_002483972.1| hypothetical protein Cyan7425_3286 [Cyanothece sp. PCC 7425]
 gi|219865272|gb|ACL45611.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7425]
          Length = 354

 Score = 60.6 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/293 (13%), Positives = 91/293 (31%), Gaps = 15/293 (5%)

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS 111
           + +         +   +  + + ++    L    + +  +L+  +    + G     WL 
Sbjct: 58  LERLGLKRGQAILCVLLLTLAILVLLGFVLVPLVIQQATQLLEGLPTWLETGNQNLNWLG 117

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
                        +  +                    +        +  L   L  I ++
Sbjct: 118 RFAEQRRIPLKLEQISNQIADQIRG------------LVGSLPGVAIGTLGRLLDTILIL 165

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
           +  F+    G  + Q L +L             ++     +  F+   ++A    L +  
Sbjct: 166 VLAFYMLFYGGRLWQGLINLLPVPLGPILSHSLQLN---FQRFFIVQLLLACFMVLAMLP 222

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
                 +   +   ++  +  +IP         +   L++  N++ A  + +   I   I
Sbjct: 223 VVLALQINFGLLFALVIGVAQLIPVIGATVGIGIVTLLVMLQNLWLAVQVAIAAVILQQI 282

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            D  L P L+G  I L  L  F  L+ G R  GLLG  +   +   I   ++E
Sbjct: 283 KDNVLSPKLLGDVIGLNPLWQFIALLIGARVAGLLGAILSIPIAGTIKATFEE 335


>gi|75910067|ref|YP_324363.1| hypothetical protein Ava_3863 [Anabaena variabilis ATCC 29413]
 gi|75703792|gb|ABA23468.1| Protein of unknown function UPF0118 [Anabaena variabilis ATCC
           29413]
          Length = 347

 Score = 60.6 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/306 (11%), Positives = 97/306 (31%), Gaps = 15/306 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            + + I L  L+ ++     + +++++      +             +  +++   V+  
Sbjct: 9   LLALVISLYILWEIRQLVLLLFTSVVLAVAINQLVLRL-QLSGIKRIWAVLLSVGIVVTF 67

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +  LL +    + + ++L+  +            WL +        + +   +     L
Sbjct: 68  LVGALLLILPPFIEQFRQLLVLLPTGINQIQQGINWLEE-----RLVDSYLPEIPDIDRL 122

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
               + ++       I  F++          L  + +I+       +     +       
Sbjct: 123 LEQIQPWVTRLTQQAIALFSTSVTA-----LLETLLVIVLTLMLLANPQPYRRVFIRFFP 177

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           + +     +I       +    +G  I  +  G + G   W+  VP  +A  V+  ++  
Sbjct: 178 NFYRHRVDEILTRCATGLGDWTIGALIEMLFIGTLSGLGLWILQVPLALAHAVLAGLLNF 237

Query: 254 IP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           IP  G     F  ++I  L     + A  + +   +   +    L P ++   + L    
Sbjct: 238 IPNIGPTLSVFLPMAIAFL--DAPWKAVAVLILYLVIQNVESYWLTPTIMAKQVALLPAV 295

Query: 312 TFFGLV 317
           T    +
Sbjct: 296 TLTAQI 301


>gi|326791162|ref|YP_004308983.1| hypothetical protein Clole_2071 [Clostridium lentocellum DSM 5427]
 gi|326541926|gb|ADZ83785.1| protein of unknown function UPF0118 [Clostridium lentocellum DSM
           5427]
          Length = 419

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 51/368 (13%), Positives = 115/368 (31%), Gaps = 41/368 (11%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISK------------------------KEESS 59
            + LK     ++   +I +   PI   + ++                        K    
Sbjct: 48  YWLLKP----LILGFVIAYLLDPIVEFYENRCHKIKGKELFHSKKDQAESDLNHPKRWHM 103

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV---VLANQHGIPVPRWLSDIPGG 116
             +  + T   + + +   + +    +  +    S +      N++       L  +   
Sbjct: 104 RTVPTLFTFLTVIMVLGLFILIIVMNIEAIAGNFSLLGIKESINRYLAYFENMLEGVNRF 163

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
                +        Q +      F+      F+    +  G+  ++  L+ +      F+
Sbjct: 164 TNEMGILRGQEGIVQKVYSAINDFVLRLSNQFLNSLTT-IGLNTMNLLLAFVIA----FY 218

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKK----ISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
             +D       +      L      +    +   +  V      G  I A+   ++   A
Sbjct: 219 LLQDKQRCIAVVKKASYTLLKPKIYRHTMVLCHDIDYVFSGYIRGQIIDAMIVAVLTSLA 278

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
             +  +   + +GVI  I  +IP   PI  F    I  ++  N   A    +   I   I
Sbjct: 279 LTVIQLDFAIIIGVIAGIFNLIPYFGPIVGFILAIIIGILDPNPMKAVYGAIAILIIQQI 338

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
               + P +VG  +KL  +     ++ G    GL+G+ IG  + A I ++    +  +  
Sbjct: 339 DGWIIVPKVVGECVKLHPVIVLLAILIGGNLFGLMGMLIGVPVAAFIRLVLLRYVTELFP 398

Query: 352 NKEKISSN 359
           + E++   
Sbjct: 399 DGEEVLEE 406


>gi|262047750|ref|ZP_06020702.1| permease [Lactobacillus crispatus MV-3A-US]
 gi|260571955|gb|EEX28523.1| permease [Lactobacillus crispatus MV-3A-US]
          Length = 344

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 114/343 (33%), Gaps = 27/343 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            N   + R++++ +I+  LY ++     VL   I  +    +         +  T L V 
Sbjct: 9   KNNIPLRRFVVLLLIIACLYEIRAMMNTVLLTFIFTYVIVHLIHLVQRYFPKIPTGLIVA 68

Query: 66  ATVSVMCLFIVPLLFL-FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            T  ++   +  ++ +     + ++ ++V  V+   +                  +   T
Sbjct: 69  VTYLIILALLYFVVTIYLPMLVGQISKMVKSVMAFYESN-----------ESSRLASHVT 117

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +++S  + +               +  FA      F    ++    +I  FF+  +   +
Sbjct: 118 RYISKGEIVTQ----------AKRVGTFALHTVTNFGSLTIATFMSLILSFFYTIELDRM 167

Query: 185 SQQ----LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
            +     + S          +   +               IAI    +         +P 
Sbjct: 168 IEFSKLFVKSGYFKWLFEDIRYFGKKFTNTFGVVLEAQFFIAICNTALTMIGLAFMHMPQ 227

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +ALG++  I++++P  G  IS   +SI     G I     +F+   I   I    L P 
Sbjct: 228 IIALGLMVFILSLVPVAGVIISLIPLSIIGYSVGGIRYVIYIFIMIMIIHAIEAYVLNPK 287

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            +    ++P   TF  L+      G  GL +G  +   +  + 
Sbjct: 288 FMASKTEVPIFYTFLVLLVAEHFWGTWGLIVGVPIFTFLLDVL 330


>gi|218231446|ref|YP_002370215.1| membrane protein YdbI [Bacillus cereus B4264]
 gi|218159403|gb|ACK59395.1| membrane protein YdbI [Bacillus cereus B4264]
          Length = 317

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 1/153 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +   +   +          +IA+   ++   A W+ G P  + L ++  ++ +IP  G  
Sbjct: 158 EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVI 217

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS   + +     G I     + +   +   +    L P  +     LP   TF  L+  
Sbjct: 218 ISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFS 277

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              +G+ GL IG  +   +  +   +   ++++
Sbjct: 278 EHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 310


>gi|145632587|ref|ZP_01788321.1| molybdenum cofactor biosynthesis protein [Haemophilus influenzae
           3655]
 gi|145634664|ref|ZP_01790373.1| hypothetical protein CGSHiAA_05546 [Haemophilus influenzae PittAA]
 gi|229844571|ref|ZP_04464711.1| hypothetical protein CGSHi6P18H1_09655 [Haemophilus influenzae
           6P18H1]
 gi|144986782|gb|EDJ93334.1| molybdenum cofactor biosynthesis protein [Haemophilus influenzae
           3655]
 gi|145268209|gb|EDK08204.1| hypothetical protein CGSHiAA_05546 [Haemophilus influenzae PittAA]
 gi|229812820|gb|EEP48509.1| hypothetical protein CGSHi6P18H1_09655 [Haemophilus influenzae
           6P18H1]
          Length = 348

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 54/346 (15%), Positives = 123/346 (35%), Gaps = 23/346 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+  +   + ++    + IIL  +        P L +L I     PI  +   +      
Sbjct: 1   MQNNLNLHRTLLGIAAVIIILAGVKLAAEIVVPFLLSLFIAIICSPIIKAMTQRHVPH-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +LA+     ++ L    L+ L      E  + + +  +     I     LS         
Sbjct: 59  WLAITLLFVLISLVFFFLVGLINSTAREFTQSIPQYKILLSQRINDLTALSQ-------- 110

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                +L    S + + E F  +  ++F+ R    F  +  +  + ++ +I    F   +
Sbjct: 111 ---RFNLPFTLSRETIQENFDPSIIMNFVSRVLLNFSGVVSNVFVLVLVVI----FMLAE 163

Query: 181 GFSISQQLDSLG---EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             ++  +   +     H      + I R++  VI    +     ++  G+ +       G
Sbjct: 164 APTMKHKFAMVISSTPHDAAKEERHIDRVLQGVIGYLGIKSI-TSLLTGVGVFILLEACG 222

Query: 238 VPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           V   +    ++ ++  IP  G+ I+   + +  L+         + +       +V   +
Sbjct: 223 VQYAILWATLSFLLNYIPNIGSIIAAIPIIVQALLLNGFGVGFGVAVGVIAINMVVGNII 282

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            P ++G  + L  L  F  L+     +G +G+ +  P+ MAL   +
Sbjct: 283 EPKMMGQRLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMALKIAL 328


>gi|331084164|ref|ZP_08333270.1| hypothetical protein HMPREF0992_02194 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330402019|gb|EGG81592.1| hypothetical protein HMPREF0992_02194 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 346

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 55/330 (16%), Positives = 108/330 (32%), Gaps = 11/330 (3%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           + + + ++     P     I+             K+      L+   T   M   I+ +L
Sbjct: 16  VFLGMKYVFPVILPFFLGWILAEAVHVPAKRICEKQTSKKLHLS--ETALGMIFIIMGVL 73

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            +    +  ++ L  K+    Q+   +     DI   +         +S  +S   +S  
Sbjct: 74  LVVLSMLFTLQYLTGKLGECVQYYPELKEEAQDILWKLCLGIEHLTGISADKSCFYISRQ 133

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSII----FMIIALFFFYRDGFSISQQLDSLGEHL 195
                   F  + +    ++ +  C+  +      I+    F ++   +   L+      
Sbjct: 134 AELFLRCIFSGKNSMNTAVVSVKGCVCFVGILAICIVFAILFLQERERVYASLEKWKIF- 192

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                  I R +   I++       I     L+     W   V  +V  GV   +    P
Sbjct: 193 --GNLIHIIREMAAGIKAYLKAQFKIIFVVCLLCVGGLWALKVRHYVGFGVAIGMFDAFP 250

Query: 256 G-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G        ++ + ++G I  +  L +   +    V + L P L+G  + +  L    
Sbjct: 251 VLGTGTFLIPGALLMFLQGKIKMSIGLLVLY-LLTAAVRQFLEPRLIGNHVGVSPLLVLV 309

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +  GV   G  G  +GPV   LI VI KE
Sbjct: 310 SVYLGVVLYGGFGFVLGPVSAFLIYVILKE 339


>gi|89096364|ref|ZP_01169257.1| membrane protein [Bacillus sp. NRRL B-14911]
 gi|89089218|gb|EAR68326.1| membrane protein [Bacillus sp. NRRL B-14911]
          Length = 343

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 65/162 (40%), Gaps = 2/162 (1%)

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG- 256
              +  SR              +IAI   ++   A W+   P  VAL ++  ++ +IP  
Sbjct: 182 DEIEYFSRKFSMTFGKVIEAQFVIAIVNCILTTLALWIMDFPQLVALSLMVLVLGLIPVA 241

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           G  IS   ++I     G       + L   +   I    L P L+    +LP   TF  L
Sbjct: 242 GVIISMIPLTIIAYSIGGFMLVGYIILVVMVIHAIEAYILNPKLMSSKTELPVFYTFIVL 301

Query: 317 VGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKEKIS 357
           +      G+ GL +G PV M L+ ++  + I   +  + ++S
Sbjct: 302 IFSEHFFGIWGLIVGIPVFMFLLDILGVKEIAPKQTKQARVS 343


>gi|315130409|gb|EFT86396.1| hypothetical membrane protein [Staphylococcus aureus subsp. aureus
           CGS03]
          Length = 361

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/330 (13%), Positives = 105/330 (31%), Gaps = 13/330 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P L +  + +   P  +             A I T+ +    I+ L+  F   ++   
Sbjct: 41  FLPFLISGFLFYICLPFQNLLEKVGFPR---WASITTIMLALFAIIGLIVAFVAPIIISN 97

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
                                 +       E  T  +++         T + +N + +I 
Sbjct: 98  INNLISQTPALQKEAEQIIKFALAQMDKLPEDVTSRITNMVKSMGDGVTNILSNSLQYIT 157

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              S            +I +   L +  +D       +    +     ++  +   +   
Sbjct: 158 SLISTI--------FLLIMVPFFLIYMLKDHEKFIPAVAKFFKGERKVFFVDLLTDLNFT 209

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYL 269
           ++S   G   +++  G+ L   Y +  +P    L +   +  +IP  G+ +SF   +I L
Sbjct: 210 LKSYIQGQVTVSVILGIFLYIGYSIIDLPYIPLLVLFAGVANLIPFLGSWLSFAPAAI-L 268

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            I  +      + +   I   +    + P ++G  + +  L     ++      G   + 
Sbjct: 269 GIIDSPTTFIWVCIITLIAHQLEGNIITPNVMGKSLSIHPLTIIIVILAAGDLGGFTLVL 328

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISSN 359
           I   L A++  +        +   +K +SN
Sbjct: 329 IAVPLYAVLKTVVSNIFKYRQRIIDKANSN 358


>gi|148827485|ref|YP_001292238.1| hypothetical protein CGSHiGG_04490 [Haemophilus influenzae PittGG]
 gi|148718727|gb|ABQ99854.1| hypothetical protein CGSHiGG_04490 [Haemophilus influenzae PittGG]
          Length = 348

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 54/346 (15%), Positives = 121/346 (34%), Gaps = 23/346 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+  +   + ++    + IIL  +        P L +L I     P+  +   ++     
Sbjct: 1   MQNNLNLHRTLLGIAAVIIILAGVKLAAEIVVPFLLSLFIAIICSPMIKAMTQRRVPH-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +LA+     ++ L    L  L      E               IP  + L          
Sbjct: 59  WLAITLLFVLISLVFFFLAGLINSTAREF-----------TQSIPQYKVLLSQRVSDLTG 107

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L   +L    S + + E F  +  ++F+ R    F  +  +  + ++ +I    F   +
Sbjct: 108 LLQRFNLPFTLSRETIQENFDPSIIMNFVSRVLLNFSGVVSNVFVLVLVVI----FMLAE 163

Query: 181 GFSISQQLDSLG---EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             ++  +   +     H      + I R++  VI    +     ++  G+ +       G
Sbjct: 164 APTMKHKFAMVISSTPHDAAKEERHIDRVLQGVIGYLGIKSI-TSLLTGVGIFILLEACG 222

Query: 238 VPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           V   +    ++ ++  IP  G+ I+   + +  L+         + +       +V   +
Sbjct: 223 VQYAILWATLSFLLNYIPNIGSIIAAIPIIVQALLLNGFGVGFGVAVGVIAINMVVGNII 282

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            P ++G  + L  L  F  L+     +G +G+ +  P+ MAL   +
Sbjct: 283 EPKMMGQRLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMALKIAL 328


>gi|17230655|ref|NP_487203.1| hypothetical protein all3163 [Nostoc sp. PCC 7120]
 gi|17132258|dbj|BAB74862.1| all3163 [Nostoc sp. PCC 7120]
          Length = 347

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/313 (11%), Positives = 104/313 (33%), Gaps = 18/313 (5%)

Query: 10  GIMRWMIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
            + +W+ +  +++SLY L   +     + +++++      +             +  +++
Sbjct: 2   KLGQWLGLLALVISLYILWEIRQLVLLLFTSVVLAVAINQLVLRL-QLAGIKRIWAVLLS 60

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
              V+   +   L +    + E ++L+  +            WL +        + +   
Sbjct: 61  VAIVVTFLVSAFLLILPPFIEEFRQLLVLLPTGINQIQQGINWLEE-----RLVDSYLPE 115

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +     L    + ++ +     I  F++          L  + +I+       +     +
Sbjct: 116 IPDIDRLLEQLQPWVTSLTQQAIALFSTSVTA-----LLETLLVIVLTLMLLANPQPYRR 170

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
                  + +     +I       + +  +G  +  +  G++ G   W+  VP  +A  V
Sbjct: 171 VFIRFFPNFYRHRVDEILTRCATGLGNWTVGALMEMLFIGILSGLGLWILQVPLALAHAV 230

Query: 247 ITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           +  ++  IP  G     F  ++I  L     + A  + +   +   +    L P ++   
Sbjct: 231 LAGLLNFIPNIGPTLSVFLPMAIAFL--DAPWKALAVLILYLVIQNVESYWLTPTIMAKQ 288

Query: 305 IKLPFLPTFFGLV 317
           + L    T    +
Sbjct: 289 VALLPAVTLTAQI 301


>gi|298694250|gb|ADI97472.1| probable membrane protein [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 361

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/330 (13%), Positives = 105/330 (31%), Gaps = 13/330 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P L +  + +   P  +             A I T+ +    I+ L+  F   ++   
Sbjct: 41  FLPFLISGFLFYICLPFQNLLEKVGFPR---WASITTIMLALFAIIGLIVAFVAPIIISN 97

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
                                 +       E  T  +++         T + +N + +I 
Sbjct: 98  INNLISQTPALQKEAEQIIKFALAQMDKLPEDVTSRITNMVKSMGDGVTNILSNSLQYIT 157

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              S            +I +   L +  +D       +    +     ++  +   +   
Sbjct: 158 SLISTI--------FLLIMVPFFLIYMLKDHEKFIPAVAKFFKGERKVFFVDLLTDLNFT 209

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYL 269
           ++S   G   +++  G+ L   Y +  +P    L +   +  +IP  G+ +SF   +I L
Sbjct: 210 LKSYIQGQVTVSVILGIFLYIGYSIIDLPYIPLLVLFAGVANLIPFLGSWLSFAPAAI-L 268

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            I  +      + +   I   +    + P ++G  + +  L     ++      G   + 
Sbjct: 269 GIIDSPTTFIWVCIITLIAHQLEGNIITPNVMGKSLSIHPLTIIVVILAAGDLGGFTLVL 328

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISSN 359
           I   L A++  +        +   +K +SN
Sbjct: 329 IAVPLYAVLKTVVSNIFKYRQRIIDKANSN 358


>gi|152979543|ref|YP_001345172.1| hypothetical protein Asuc_1888 [Actinobacillus succinogenes 130Z]
 gi|150841266|gb|ABR75237.1| protein of unknown function UPF0118 [Actinobacillus succinogenes
           130Z]
          Length = 350

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 54/332 (16%), Positives = 109/332 (32%), Gaps = 27/332 (8%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + II   +          L AL I     P+      ++     +LA+     ++ L   
Sbjct: 17  LVIIFAGIKLSAEIVVQFLLALFISIVCSPVIKFMTYRRVPH--WLAIALLFVLISLAFF 74

Query: 77  PLLFLFYYGMLEMK---ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            L+ L    + E         +++L   H +        IP    AS +  +   +    
Sbjct: 75  FLVGLINGTVQEFSRSMPQYRELMLERLHSVQALAVRLHIPFDFDASRIQQQFDPN---- 130

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL-- 191
                          +  FAS   + F +   S   +I+ + F   +  +  ++L     
Sbjct: 131 --------------VLMNFASHLLLNFSNVVSSAFVLILVVIFMLLEAPTAKRKLAIAFS 176

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                    ++    V + I S     T+++   G  +     L GV   V    ++ + 
Sbjct: 177 SNRREQNREEQHLDRVLQGIISYLGVKTLVSTLTGFCVWLLLELMGVQYAVLWATLSFLF 236

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             IP  G+ I+   + +  L+         +         ++   L P L+G  + L  L
Sbjct: 237 NYIPNIGSIIAAIPIIVQTLLLNGFSVGFAVAAGVIAVNMVIGNVLEPKLMGKKLGLSTL 296

Query: 311 PTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
             F  L+     +G +G+ +  P+ MA    +
Sbjct: 297 VVFLSLLFWGWLLGTVGMLLSVPLTMACKIAL 328


>gi|228930445|ref|ZP_04093445.1| hypothetical protein bthur0010_51230 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228829164|gb|EEM74801.1| hypothetical protein bthur0010_51230 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 271

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 1/153 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +   +   +          +IA+   ++   A W+ G P  + L ++  ++ +IP  G  
Sbjct: 115 EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVI 174

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS   + +     G I     + +   +   +    L P  +     LP   TF  L+  
Sbjct: 175 ISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFS 234

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              +G+ GL IG  +   +  +   +   ++++
Sbjct: 235 EHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 267


>gi|262049357|ref|ZP_06022231.1| hypothetical protein SAD30_1655 [Staphylococcus aureus D30]
 gi|259162589|gb|EEW47157.1| hypothetical protein SAD30_1655 [Staphylococcus aureus D30]
          Length = 361

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/330 (13%), Positives = 114/330 (34%), Gaps = 13/330 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P L +  + +   P + + + K             +++  +  + + F+    +  + 
Sbjct: 41  FLPFLISGFLFYICLP-FRNLLEKVGFPRWASITTIMLALFAIIGLIVAFVAPIIISNIN 99

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L+S+     +    + ++   +       E  T  +++         T + +N + +I 
Sbjct: 100 NLISQTPALQKEAEQIIKF--ALAQMDKLPEDVTSRITNMVKSMGDGVTNILSNSLQYIT 157

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              S            +I +   L +  +D       +    +     ++  +   +   
Sbjct: 158 SLISTI--------FLLIMVPFFLIYMLKDHEKFIPAVAKFFKGERKVFFVDLLTDLNFT 209

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYL 269
           ++S   G   +++  G+ L   Y +  +P    L +   +  +IP  G+ +SF   +I L
Sbjct: 210 LKSYIQGQVTVSVILGIFLYIGYSIIDLPYIPLLVLFAGVANLIPFLGSWLSFAPAAI-L 268

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            I  +      + +   I   +    + P ++G  + +  L     ++      G   + 
Sbjct: 269 GIIDSPTTFIWVCIITLIAHQLEGNIITPNVMGKSLSIHPLTIIVVILAAGDLGGFTLVL 328

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISSN 359
           I   L A++  +        +   +K +SN
Sbjct: 329 IAVPLYAVLKTVVSNIFKYRQRIIDKANSN 358


>gi|326674974|ref|XP_001340397.4| PREDICTED: transmembrane protein C9orf5-like, partial [Danio rerio]
          Length = 559

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 86/245 (35%), Gaps = 15/245 (6%)

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN------GIDFIPRFASRFGMIFL 161
            WL DI      +    +++    S+       +  N          +       G   L
Sbjct: 274 SWLGDILDWQDIASFLQENIETLLSILESLWVVMSRNVGLLISTTTTLLTVLFHSGTALL 333

Query: 162 DYCLSIIFMIIALFFFYRDG---FSISQQLDSLGEHLFPAYWKKIS-RIVPKVIRSTFLG 217
           ++ LS++  +  LF+        +   + + SL     P     I  + V + IR  F  
Sbjct: 334 NFALSLVIFLTTLFYLLSSSGEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIRGVFDA 393

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI-KGNI 275
              +A   GL     + + G+        + AI+  +P  G   +     + L + +   
Sbjct: 394 SLKMAGFYGLYTWLTHTIFGINIVFIPSAMAAILGAVPFLGTYWAALPAVLDLWLAQAEG 453

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             A  L  +  +  + VD  +   + GG        T   + GG   +GL G  IGP+L+
Sbjct: 454 VKALLLLFFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAIIGPILL 510

Query: 336 ALIAV 340
            ++ V
Sbjct: 511 CILVV 515


>gi|257425062|ref|ZP_05601488.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427726|ref|ZP_05604124.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430361|ref|ZP_05606743.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433065|ref|ZP_05609423.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435962|ref|ZP_05612009.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282913785|ref|ZP_06321572.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           M899]
 gi|282923818|ref|ZP_06331494.1| hypothetical protein SARG_01359 [Staphylococcus aureus subsp.
           aureus C101]
 gi|293500823|ref|ZP_06666674.1| hypothetical protein SCAG_01353 [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293509778|ref|ZP_06668487.1| hypothetical protein SAZG_01679 [Staphylococcus aureus subsp.
           aureus M809]
 gi|293526364|ref|ZP_06671049.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           M1015]
 gi|257272038|gb|EEV04170.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274567|gb|EEV06054.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278489|gb|EEV09108.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281158|gb|EEV11295.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284244|gb|EEV14364.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282313790|gb|EFB44182.1| hypothetical protein SARG_01359 [Staphylococcus aureus subsp.
           aureus C101]
 gi|282321853|gb|EFB52177.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           M899]
 gi|290920436|gb|EFD97499.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291095828|gb|EFE26089.1| hypothetical protein SCAG_01353 [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291467228|gb|EFF09745.1| hypothetical protein SAZG_01679 [Staphylococcus aureus subsp.
           aureus M809]
          Length = 361

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/330 (13%), Positives = 114/330 (34%), Gaps = 13/330 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P L +  + +   P + + + K             +++  +  + + F+    +  + 
Sbjct: 41  FLPFLISGFLFYICLP-FQNLLEKVGFPRWASITTIMLALFAIIGLIVAFVAPIIISNIN 99

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L+S+     +    + ++   +       E  T  +++         T + +N + +I 
Sbjct: 100 NLISQTPALQKETEQIIKF--ALAQMDKLPEDVTSRITNMVKSMGDGVTNILSNSLQYIT 157

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              S            +I +   L +  +D       +    +     ++  +   +   
Sbjct: 158 SLISTI--------FLLIMVPFFLIYMLKDHEKFIPAVAKFFKGERKVFFVDLLTDLNFT 209

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYL 269
           ++S   G   +++  G+ L   Y +  +P    L +   +  +IP  G+ +SF   +I L
Sbjct: 210 LKSYIQGQVTVSVILGIFLYIGYSIIDLPYIPLLVLFAGVANLIPFLGSWLSFAPAAI-L 268

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            I  +      + +   I   +    + P ++G  + +  L     ++      G   + 
Sbjct: 269 GIIDSPTTFIWVCIITLIAHQLEGNIITPNVMGKSLSIHPLTIIVVILAAGDLGGFTLVL 328

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISSN 359
           I   L A++  +        +   +K +SN
Sbjct: 329 IAVPLYAVLKTVVSNIFKYRQRIIDKANSN 358


>gi|254423473|ref|ZP_05037191.1| conserved domain protein, putative [Synechococcus sp. PCC 7335]
 gi|196190962|gb|EDX85926.1| conserved domain protein, putative [Synechococcus sp. PCC 7335]
          Length = 374

 Score = 60.2 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/315 (15%), Positives = 109/315 (34%), Gaps = 22/315 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +I+  L  L G   P+L +L +   + P+ S    +K+    +L+ +  +  + +  +
Sbjct: 45  IVLIVSGLRALSGLLTPILLSLFLVLVTAPLLSWL--RKKGLPRWLSYLVILLGVGIVGL 102

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
              F     + ++ ++             +P +++ I       ELW    +     + +
Sbjct: 103 FFTFFLTTSLNQLLDV-------------LPTYINQI--ESQVEELWEWLGTRGIDSEDI 147

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            E  L     + I R +       L    ++   +I   +      S S +L        
Sbjct: 148 QE--LTWFQPERILRVSVTVTTTVLGLFSNVGLTLIIFIYMLATAPSFSARLRKGLRKNP 205

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
            A  +   +   +   +  L    +     LV      + G+   V  GV++ ++  +P 
Sbjct: 206 SALQR--LQAFAQSTSAYLLIKGWLGALTALVQIFLMLILGLDFAVLWGVLSFLLNFVPN 263

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G  I+     +  LI+     A    +         D  + P  +   + L  L TF  
Sbjct: 264 IGFYIALIPPLLLSLIELGWLKAVLFAIAYVAINNFFDLVIAPKYLSEGLDLSALVTFLA 323

Query: 316 LVGGVRTMGLLGLFI 330
           ++     +G +G F+
Sbjct: 324 VIIWTWILGPIGAFL 338


>gi|27467631|ref|NP_764268.1| hypothetical protein SE0713 [Staphylococcus epidermidis ATCC 12228]
 gi|251810386|ref|ZP_04824859.1| permease [Staphylococcus epidermidis BCM-HMP0060]
 gi|27315175|gb|AAO04310.1|AE016746_100 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|251805990|gb|EES58647.1| permease [Staphylococcus epidermidis BCM-HMP0060]
          Length = 372

 Score = 60.2 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 46/330 (13%), Positives = 108/330 (32%), Gaps = 13/330 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P L +  + +   P  +             A I T+ +  + I+ ++  F   ++   
Sbjct: 52  FLPFLISGFLFYICLPFQNILEKWGFPR---WASITTIFIGLIVIIAIVVSFIAPIIISN 108

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
                    +            +       +  T  ++          T + +N + +I 
Sbjct: 109 INNLIKQTPSLQKEAEQLINFSLRQMDKLPDDVTHRINKAVKSMGDGATSILSNSVSYIT 168

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
            F S            +I +   L +  +D       +    +     +   + + +   
Sbjct: 169 SFIST--------VFLLIMVPFFLIYMLKDHEKFIPAIGKFFKGERKVFVVDLLKDLNFT 220

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYL 269
           ++S   G   ++I  G++L   Y + G+P    L +   +  +IP  G  +SF   +I  
Sbjct: 221 LKSYIQGQVTVSIILGIILYIGYTIIGLPYTPLLVLFAGVANLIPFLGPWLSFAPAAILG 280

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           +I G       + +   I   +    + P ++G  + +  L     ++      G   + 
Sbjct: 281 IIDG-PSTFIWVCVVTLIAQQLEGNVITPNVMGKSLSIHPLTIIVVILAAGDLGGFTLIL 339

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +   L A+I  +        +   +K +SN
Sbjct: 340 VAVPLYAVIKTLVSNIFKYRQRIVDKANSN 369


>gi|153009777|ref|YP_001370992.1| hypothetical protein Oant_2449 [Ochrobactrum anthropi ATCC 49188]
 gi|151561665|gb|ABS15163.1| protein of unknown function UPF0118 [Ochrobactrum anthropi ATCC
           49188]
          Length = 338

 Score = 60.2 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 59/333 (17%), Positives = 108/333 (32%), Gaps = 26/333 (7%)

Query: 14  WMIMFIILVSLYFLKG---FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +I+    V +  L      FAPV+ AL I    WP+     S    S     VI  + V
Sbjct: 8   TLILIAGCVLIALLHYGGAVFAPVVFALFIIMLVWPVQRGLSSLM--SRYLALVITFLLV 65

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + L +     L +      + ++   V        +  WL     G+ AS LW+++ S  
Sbjct: 66  VFLLLGFGWLLAWTVGQVGRRILIDAVRYQLLYEQLKIWLEG--HGIAASVLWSENFS-- 121

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                          + +  R     G    +     +  ++ +     +      ++  
Sbjct: 122 ---------------VSWTLRMLQSIGSRLNNTFSFWLVALVYVLLGLAETDEFRARIKQ 166

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L        + + S+     IR   L   ++++  G  +     L G+P     G +  I
Sbjct: 167 LKNQEAANSFLRASQSAATKIRFYMLLRALMSLATGSFVWLLTRLIGLPFAETWGFVAFI 226

Query: 251 MAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +  IP   P+  T            +      +F+   I   ++   + P L G  I L 
Sbjct: 227 LNFIPFLGPLVATLFITAFAFTHFASWQWVLAVFVGLNIIQSVIGSVIEPRLTGKTISLS 286

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
              T F +       G+ G FIG  +  +    
Sbjct: 287 PFATLFSVFAWGSLWGVFGAFIGVPITIVALTF 319


>gi|237728791|ref|ZP_04559272.1| PerM family permease [Citrobacter sp. 30_2]
 gi|226909413|gb|EEH95331.1| PerM family permease [Citrobacter sp. 30_2]
          Length = 348

 Score = 60.2 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/321 (15%), Positives = 114/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +          IA   V
Sbjct: 14  LLKLAALVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVGRP-----IAITLV 68

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L       + E +  +   N+       +L ++            H+S  
Sbjct: 69  VVVMLIVLTALVGVLASSITEFMDLLPKYNKELTRKVLYLQEM------VPFLNLHMSPE 122

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           + L+ +    L T     +   +     +FL   ++++FM+  +                
Sbjct: 123 RILQRMDSDKLMTFTTTLMTSLSGAMASVFL-LVMTVVFMLFEV--------RHVPYKMR 173

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G ++     L G+   +  GV+  +
Sbjct: 174 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGAIIWLGLALMGIQFALMWGVLAFL 232

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  G+ IS     I  L+   I+    +     +   ++   L P ++G  + L  
Sbjct: 233 LNYVPNIGSVISAVPPMIQALLFNGIYECLLVGALFLVVHMVIGNILEPRMMGHRLGLST 292

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           L  F  L+     +G +G+ +
Sbjct: 293 LIVFLSLLVWGWLLGPVGMLL 313


>gi|260913159|ref|ZP_05919641.1| PerM family permease [Pasteurella dagmatis ATCC 43325]
 gi|260632746|gb|EEX50915.1| PerM family permease [Pasteurella dagmatis ATCC 43325]
          Length = 417

 Score = 60.2 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 50/337 (14%), Positives = 111/337 (32%), Gaps = 20/337 (5%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + IIL  +        P L +L I     PI     S++     +LA+   + ++     
Sbjct: 18  IVIILAGVKVASEIAIPFLLSLFIAIICSPIIRFMTSRRVPH--WLAITLLLIMILFVFF 75

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            LL L      E  + + +                 I      + + T        L + 
Sbjct: 76  FLLSLINSTAREFTQSIPQY---------------RILLSERIASIITLAKKWNIPLDLS 120

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           +E  ++      I    S   + F     ++  + + + F   +      +L  +     
Sbjct: 121 TEKTMEYMDPSVIMNLVSSTLLSFSGVVTNVFVLFLVVIFMLSEAPFAKHKLALVFSSDV 180

Query: 197 P--AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 +     + + + S     T+ ++  G+ +     L  V   +    ++ ++  I
Sbjct: 181 RNIHREEHYINRILQGVISYLGVKTLTSLLTGICVYILLELTDVQYAILWATLSFLLNYI 240

Query: 255 P-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P  G+ I+   + +  L+         + +       IV   L P ++G  + L  L  F
Sbjct: 241 PNIGSIIAAVPIVVQALLLNGFPTGFGVAIGVGAINMIVGNILEPKMMGRTLGLSTLVVF 300

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             L+     +G +G+ +   L  ++ +  + S   IK
Sbjct: 301 LSLLFWGWLLGTVGMLLSVPLTMVLKIALEASPETIK 337


>gi|256829961|ref|YP_003158689.1| protein of unknown function UPF0118 [Desulfomicrobium baculatum DSM
           4028]
 gi|256579137|gb|ACU90273.1| protein of unknown function UPF0118 [Desulfomicrobium baculatum DSM
           4028]
          Length = 396

 Score = 60.2 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 53/360 (14%), Positives = 128/360 (35%), Gaps = 25/360 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I+   ++F  + S   L       L  ++I     P  S   +     +  L     ++ 
Sbjct: 18  IILGAVLFAGIQSFTLLSHILLSFLLVMLISLALNPAISRMRAWTGGRA--LPTGLILAG 75

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
               +V   + F   M      +SK +      +  P  + +    +   +L  +  +  
Sbjct: 76  FLSILVLTGWAFLGPMQTSITNISKQLPGYWERLQKPLIMMEQRAAISEEKLQAEVTTEI 135

Query: 131 QSLKILSETF-----------------LKTNGIDFIPRFASRFGMIFLDYCLSIIFMI-- 171
              + L+                    L+++  + +    S F  +  +    +I M+  
Sbjct: 136 ARAERLAGEPVVPVAPQKPPAPEDSGSLRSSLSEMLGEAVSSFTSVAFNGTQILIVMVTV 195

Query: 172 -IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
              +FF   +   I   + ++           +++ +          M +  +  G+++ 
Sbjct: 196 FFGVFFTLLNPRPIVGVIFAIVPVRHHDKALAVAQRIGMFAPRWAGAMLVGMVTIGMLVF 255

Query: 231 SAYW-LAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
              W + G    + LG+I  I+  +P  G  +S     +  L  G +       ++ AI+
Sbjct: 256 LTMWPIFGFTDALVLGLIAGILEAVPFLGPTLSSIPALLLALGMGGMTTLWVALIYVAIQ 315

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           + + +  + PF++ G +KL      F ++  V   G+LG+ +   L+A+ +++ +E    
Sbjct: 316 I-LENNIIVPFVMAGGMKLHPTAVIFSMLLCVGAFGVLGVLVAAPLVAIASILHEELYRK 374


>gi|229821094|ref|YP_002882620.1| protein of unknown function UPF0118 [Beutenbergia cavernae DSM
           12333]
 gi|229567007|gb|ACQ80858.1| protein of unknown function UPF0118 [Beutenbergia cavernae DSM
           12333]
          Length = 392

 Score = 60.2 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 77/217 (35%), Gaps = 2/217 (0%)

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            +  +     +  +L+TN        A+R G   +   + +   + +   F   G  +  
Sbjct: 145 DADVERWVSGAVGWLRTNSATLAGAAATRVGTFLVTLMV-VALGVFSAVCFLIGGDRMFS 203

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
                        W+    +  +       G  + A   G++      + GVP  + L V
Sbjct: 204 WFVGQLPPRVRTAWRTAGDVAWRSFGGYTRGAVLTAACVGVLGYVVLLVLGVPLAIPLAV 263

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +  + A +P  GAP +     +  L    + NA  + +  A+   +    L P ++G  +
Sbjct: 264 LIFVGAFVPLIGAPAAMVVAMLVALAANGLGNAVAVGIGIALVGQVEGHVLHPLVMGKHV 323

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +L       G+  G    GL+G  +   ++ +   ++
Sbjct: 324 RLHPFVVGIGVSAGTVLGGLVGAIVAIPVLGVGWAVF 360


>gi|260663761|ref|ZP_05864648.1| permease [Lactobacillus fermentum 28-3-CHN]
 gi|260551710|gb|EEX24827.1| permease [Lactobacillus fermentum 28-3-CHN]
          Length = 346

 Score = 60.2 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 67/199 (33%), Gaps = 1/199 (0%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           +G+       + FG + +   +S+I          +        L S     F       
Sbjct: 131 HGVTLAVTTLTNFGTLLVAVAMSVILSFFYTIELRQMNEFSKTFLSSQHLSWFFKDLDFF 190

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISF 262
            +               IA+    +   A +   +P   ALG++  I++++P  G  IS 
Sbjct: 191 GKKFINTFGVVLEAQFFIALTNTALTMIALFFMKMPQIFALGLMVFILSLVPVAGVIISL 250

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             +S+     G I     L +   +   I    L P  +    +LP   TF  L+     
Sbjct: 251 VPLSMVGYSVGGIRYIVYLIIVILVIHMIESYVLNPKFMSSRTELPIFYTFVVLLVSEHL 310

Query: 323 MGLLGLFIGPVLMALIAVI 341
            G+ GL +G  +   +  I
Sbjct: 311 FGVWGLIVGVPIFTFLLDI 329


>gi|53804969|ref|YP_113175.1| permease [Methylococcus capsulatus str. Bath]
 gi|53758730|gb|AAU93021.1| putative permease [Methylococcus capsulatus str. Bath]
          Length = 362

 Score = 60.2 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 106/318 (33%), Gaps = 12/318 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  + N Q +   +++ +  + +  L     PV +A II +    +      +++     
Sbjct: 13  RRILPNAQAVSFAILLVVGFIVVVSLAKMLMPVFAAGIIAYLLDGLVE-IGERRKLPRLV 71

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++  +  + L +V  + L      +  +L+ +       G  +   + ++P       
Sbjct: 72  SVIVVYLLFLALLLVVFIGLLPLLYQQTLQLIEQAPSWVNRGQVL---IMELPERYPDYI 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              +      +++    ++ ++          S      +   +  I + + +FFF +D 
Sbjct: 129 TQEQVNDLIGAIRAELISYGQSMLTYSYASLVS-----LITVVVYFILVPLLVFFFLKDR 183

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I                 ++ + V   I +   G  +  +         + L G+   
Sbjct: 184 DRILGWFTQYLPRDRNLS-NRVWKEVDMQIGNYVRGKFVEIVILFAASFVTFSLMGLNYA 242

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTLRPF 299
           + L V+  I  +IP  GA +    V I    +  + +    L L  AI   +    L P 
Sbjct: 243 LLLAVLMGISVIIPYVGATLVTFPVMIVAFFQWGVSDDFWYLMLAYAIIQALDGVMLVPL 302

Query: 300 LVGGPIKLPFLPTFFGLV 317
           L    + L  +     ++
Sbjct: 303 LFSEVVNLHPVAIIVAIL 320


>gi|171912897|ref|ZP_02928367.1| permease [Verrucomicrobium spinosum DSM 4136]
          Length = 452

 Score = 60.2 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 50/389 (12%), Positives = 120/389 (30%), Gaps = 71/389 (18%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           FL+    P   A ++ +   P+ S  I K   +     ++  V      +   L +    
Sbjct: 52  FLQPLLIPFAVAGVLAYLLEPLVSRLI-KWGLNRQRAVMLVFVLATASIVGVSLVIVPAF 110

Query: 86  MLEMKELVSKV--------------------VLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  +   +V                     L N +G+ +  W   +P     S     
Sbjct: 111 ARQSVDFAKEVPGYAEKVRTQVLGWATSLNTRLMNDYGVDILHW--SVPQTHPTSNDAGA 168

Query: 126 HLSHPQSLKILSETFLKTN-------------------GIDFIPRFASRFGMIFLDYC-- 164
            L  P +                                 D++     + G    ++   
Sbjct: 169 GLPTPATAVQEGTDATAGTAARDAAAAEASYFTLQDLLSGDWLKSTLPKVGQNAWNFIRA 228

Query: 165 ------------LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV-- 210
                       LS++ + + L++F  +   I++            +  ++   + ++  
Sbjct: 229 GVGGFLGGFGFLLSLVIVPLYLYYFLTESPKIAESWSHYVPLRASQFKDEVVSTLAEING 288

Query: 211 -IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIY 268
            + + F G  ++++  G+  G    + GV     +G+   ++ +IP  G  + +    I 
Sbjct: 289 YLIAFFRGQLVVSLINGVATGLGLVIVGVKFGWLIGLSLCVLGIIPYLGIVVCWIPAVII 348

Query: 269 LLIKGN----------IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
             ++G                 +    A+   I    + P +VG  + L  +     +  
Sbjct: 349 ASVQGGSYLIPASSPWWVFPLVVTAIFAVVQQIDGLFITPKIVGESVGLHPMTVIVSVFA 408

Query: 319 -GVRTMGLLGLFIGPVLMALIAVIWKESI 346
             +   GLLG  +   + A + V+++  +
Sbjct: 409 WSLVMGGLLGAILAVPMTAAVKVLFQRYV 437


>gi|42518127|ref|NP_964057.1| hypothetical protein LJ0041 [Lactobacillus johnsonii NCC 533]
 gi|41582411|gb|AAS08023.1| hypothetical protein LJ_0041 [Lactobacillus johnsonii NCC 533]
          Length = 349

 Score = 60.2 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 52/346 (15%), Positives = 114/346 (32%), Gaps = 19/346 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST-FLAVIATV 68
            + R + + +I++ LY  +     +L   I  +    +      K        + V+A +
Sbjct: 13  TVHRLVTLCLIILVLYAARSMMNTILLTFIFTYLIVHLIRFTQKKIPSLPAQVIVVLAYL 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ +    +       + ++ ++   ++   Q                W S   + ++S
Sbjct: 73  LVIAIIYFAITIYVPILIKQIIKMSYSLIKFYQSD-----------DMNWVSRYLSHYIS 121

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           + +            +G+  +    + FG + + + +S+I                   L
Sbjct: 122 NSEITTQ------AKHGVTILVHALTNFGTLTIAFFMSLIISFFYTIELNSMTEFSHTFL 175

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S                              IA+    +      +  +P  +ALG++ 
Sbjct: 176 QSRHLSWLFEDVAYFGNKFVNTFGVVLEAQFFIALCNTTMTMICLIIMRMPQIIALGLMV 235

Query: 249 AIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I+++IP  G  IS   +S+     G +     +F+   I   I    L P  +    +L
Sbjct: 236 FILSLIPVAGVIISLIPLSLVAYSVGGLRYVIYIFIVIMIIHAIEAYILNPKFMASKTEL 295

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           P   TF  L+ G   +G  GL +G  +   +  I     +  K+ +
Sbjct: 296 PIFYTFVVLLVGEHFLGTWGLIVGVPIFTFLLDILGVKSVKKKKPQ 341


>gi|15924002|ref|NP_371536.1| hypothetical protein SAV1012 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15926600|ref|NP_374133.1| hypothetical protein SA0870 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21282622|ref|NP_645710.1| hypothetical protein MW0893 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49483174|ref|YP_040398.1| hypothetical protein SAR0979 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|57650203|ref|YP_185883.1| hypothetical protein SACOL1017 [Staphylococcus aureus subsp. aureus
           COL]
 gi|82750624|ref|YP_416365.1| hypothetical protein SAB0878c [Staphylococcus aureus RF122]
 gi|87161559|ref|YP_493613.1| hypothetical protein SAUSA300_0913 [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88194705|ref|YP_499501.1| hypothetical protein SAOUHSC_00948 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148267444|ref|YP_001246387.1| hypothetical protein SaurJH9_1010 [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393497|ref|YP_001316172.1| hypothetical protein SaurJH1_1029 [Staphylococcus aureus subsp.
           aureus JH1]
 gi|151221094|ref|YP_001331916.1| hypothetical protein NWMN_0882 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156979337|ref|YP_001441596.1| hypothetical protein SAHV_1006 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161509210|ref|YP_001574869.1| hypothetical protein USA300HOU_0970 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221140112|ref|ZP_03564605.1| hypothetical protein SauraJ_00580 [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253731618|ref|ZP_04865783.1| permease [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253732630|ref|ZP_04866795.1| permease [Staphylococcus aureus subsp. aureus TCH130]
 gi|255005800|ref|ZP_05144401.2| hypothetical protein SauraM_05005 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257795255|ref|ZP_05644234.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|258406904|ref|ZP_05680057.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|258421872|ref|ZP_05684793.1| conserved hypothetical protein [Staphylococcus aureus A9719]
 gi|258435270|ref|ZP_05689009.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|258441482|ref|ZP_05690842.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|258446962|ref|ZP_05695115.1| conserved hypothetical protein [Staphylococcus aureus A6300]
 gi|258449940|ref|ZP_05698038.1| conserved hypothetical protein [Staphylococcus aureus A6224]
 gi|258452038|ref|ZP_05700054.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|258455036|ref|ZP_05702999.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|262052380|ref|ZP_06024582.1| hypothetical protein SA930_0122 [Staphylococcus aureus 930918-3]
 gi|269202626|ref|YP_003281895.1| hypothetical protein SAAV_0974 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282894037|ref|ZP_06302268.1| hypothetical protein SGAG_01388 [Staphylococcus aureus A8117]
 gi|282903558|ref|ZP_06311446.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           C160]
 gi|282905332|ref|ZP_06313187.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908305|ref|ZP_06316136.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910589|ref|ZP_06318392.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282916263|ref|ZP_06324025.1| hypothetical protein SATG_01098 [Staphylococcus aureus subsp.
           aureus D139]
 gi|282918710|ref|ZP_06326445.1| hypothetical protein SASG_00016 [Staphylococcus aureus subsp.
           aureus C427]
 gi|282923690|ref|ZP_06331369.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|282927233|ref|ZP_06334855.1| conserved hypothetical protein [Staphylococcus aureus A10102]
 gi|283770078|ref|ZP_06342970.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           H19]
 gi|283957755|ref|ZP_06375206.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|284023938|ref|ZP_06378336.1| hypothetical protein Saura13_05084 [Staphylococcus aureus subsp.
           aureus 132]
 gi|294847996|ref|ZP_06788743.1| hypothetical protein SKAG_00053 [Staphylococcus aureus A9754]
 gi|295405815|ref|ZP_06815624.1| hypothetical protein SMAG_00972 [Staphylococcus aureus A8819]
 gi|295427499|ref|ZP_06820131.1| hypothetical protein SIAG_00017 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|296275576|ref|ZP_06858083.1| hypothetical protein SauraMR_04490 [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297208355|ref|ZP_06924785.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297245406|ref|ZP_06929277.1| hypothetical protein SLAG_01503 [Staphylococcus aureus A8796]
 gi|297591550|ref|ZP_06950188.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300912431|ref|ZP_07129874.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304381434|ref|ZP_07364085.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|13700815|dbj|BAB42111.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14246782|dbj|BAB57174.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21204060|dbj|BAB94758.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49241303|emb|CAG39984.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|57284389|gb|AAW36483.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           COL]
 gi|82656155|emb|CAI80566.1| probable membrane protein [Staphylococcus aureus RF122]
 gi|87127533|gb|ABD22047.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202263|gb|ABD30073.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147740513|gb|ABQ48811.1| protein of unknown function UPF0118 [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149945949|gb|ABR51885.1| protein of unknown function UPF0118 [Staphylococcus aureus subsp.
           aureus JH1]
 gi|150373894|dbj|BAF67154.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156721472|dbj|BAF77889.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|160368019|gb|ABX28990.1| hypothetical membrane protein [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724617|gb|EES93346.1| permease [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253729408|gb|EES98137.1| permease [Staphylococcus aureus subsp. aureus TCH130]
 gi|257789227|gb|EEV27567.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|257841443|gb|EEV65884.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|257842205|gb|EEV66633.1| conserved hypothetical protein [Staphylococcus aureus A9719]
 gi|257848931|gb|EEV72914.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|257852272|gb|EEV76198.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|257854294|gb|EEV77244.1| conserved hypothetical protein [Staphylococcus aureus A6300]
 gi|257856860|gb|EEV79763.1| conserved hypothetical protein [Staphylococcus aureus A6224]
 gi|257860253|gb|EEV83085.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|257862916|gb|EEV85681.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|259159752|gb|EEW44794.1| hypothetical protein SA930_0122 [Staphylococcus aureus 930918-3]
 gi|262074916|gb|ACY10889.1| hypothetical protein SAAV_0974 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269940510|emb|CBI48888.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282316520|gb|EFB46894.1| hypothetical protein SASG_00016 [Staphylococcus aureus subsp.
           aureus C427]
 gi|282319703|gb|EFB50051.1| hypothetical protein SATG_01098 [Staphylococcus aureus subsp.
           aureus D139]
 gi|282325194|gb|EFB55503.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327970|gb|EFB58252.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282330624|gb|EFB60138.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282590922|gb|EFB95997.1| conserved hypothetical protein [Staphylococcus aureus A10102]
 gi|282593076|gb|EFB98076.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|282595176|gb|EFC00140.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           C160]
 gi|282763523|gb|EFC03652.1| hypothetical protein SGAG_01388 [Staphylococcus aureus A8117]
 gi|283460225|gb|EFC07315.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           H19]
 gi|283470223|emb|CAQ49434.1| domain of unknown function, putative [Staphylococcus aureus subsp.
           aureus ST398]
 gi|283789904|gb|EFC28721.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|285816690|gb|ADC37177.1| hypothetical protein SA2981_0966 [Staphylococcus aureus 04-02981]
 gi|294824796|gb|EFG41218.1| hypothetical protein SKAG_00053 [Staphylococcus aureus A9754]
 gi|294969250|gb|EFG45270.1| hypothetical protein SMAG_00972 [Staphylococcus aureus A8819]
 gi|295127857|gb|EFG57491.1| hypothetical protein SIAG_00017 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|296887094|gb|EFH25997.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297177709|gb|EFH36959.1| hypothetical protein SLAG_01503 [Staphylococcus aureus A8796]
 gi|297576436|gb|EFH95152.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300886677|gb|EFK81879.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304340007|gb|EFM05950.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|312438615|gb|ADQ77686.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|312829407|emb|CBX34249.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315193672|gb|EFU24067.1| hypothetical membrane protein [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|315197533|gb|EFU27869.1| hypothetical membrane protein [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320141172|gb|EFW33019.1| hypothetical protein HMPREF9528_00792 [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320143229|gb|EFW35019.1| hypothetical protein HMPREF9529_01463 [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|329728182|gb|EGG64621.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           21172]
 gi|329729028|gb|EGG65440.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           21193]
 gi|329731164|gb|EGG67535.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           21189]
          Length = 361

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 45/330 (13%), Positives = 105/330 (31%), Gaps = 13/330 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P L +  + +   P  +             A I T+ +    I+ L+  F   ++   
Sbjct: 41  FLPFLISGFLFYICLPFQNLLEKVGFPR---WASITTIMLALFAIIGLIVAFVAPIIISN 97

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
                                 +       E  T  +++         T + +N + +I 
Sbjct: 98  INNLISQTPALQKEAEQIIKFALAQMDKLPEDVTSRITNMVKSMGDGVTNILSNSLQYIT 157

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              S            +I +   L +  +D       +    +     ++  +   +   
Sbjct: 158 SLISTI--------FLLIMVPFFLIYMLKDHEKFIPAVAKFFKGERKVFFVDLLTDLNFT 209

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYL 269
           ++S   G   +++  G+ L   Y +  +P    L +   +  +IP  G+ +SF   +I L
Sbjct: 210 LKSYIQGQVTVSVILGIFLYIGYSIIDLPYIPLLVLFAGVANLIPFLGSWLSFAPAAI-L 268

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            I  +      + +   I   +    + P ++G  + +  L     ++      G   + 
Sbjct: 269 GIIDSPTTFIWVCIITLIAHQLEGNIITPNVMGKSLSIHPLTIIVVILAAGDLGGFTLVL 328

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISSN 359
           I   L A++  +        +   +K +SN
Sbjct: 329 IAVPLYAVLKTVVSNIFKYRQRIIDKANSN 358


>gi|229106024|ref|ZP_04236645.1| hypothetical protein bcere0019_51480 [Bacillus cereus Rock3-28]
 gi|228677419|gb|EEL31675.1| hypothetical protein bcere0019_51480 [Bacillus cereus Rock3-28]
          Length = 314

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 68/165 (41%), Gaps = 5/165 (3%)

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            ++  H    + KK +R   KVI + F    +IA+   ++   A W+ G P  + L ++ 
Sbjct: 150 LAIFYHEIEYFGKKFARSFGKVIEAQF----LIAVVNCVLSVIALWILGFPQLLGLALMI 205

Query: 249 AIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++ +IP  G  IS   + +     G I     + +   +   +    L P  +     L
Sbjct: 206 FLLGLIPVAGVIISLFPLCMIAYNIGGIMYVVYILIIVTVIHALESYVLNPKFMSQKTNL 265

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           P   TF  L+     +G+ GL IG  +   +  +   +   ++++
Sbjct: 266 PIFYTFMVLIFSEHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 310


>gi|257465012|ref|ZP_05629383.1| membrane protein [Actinobacillus minor 202]
 gi|257450672|gb|EEV24715.1| membrane protein [Actinobacillus minor 202]
          Length = 354

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 60/330 (18%), Positives = 121/330 (36%), Gaps = 22/330 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + IIL  +          L +L I     P+      +   +      +A   +  LFI+
Sbjct: 16  IVIILAGVKLAGEIVIQFLLSLFIAIICSPV-----IRFMTNRKIPLGLAVAFLFVLFII 70

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
              FL       ++E  + +          P +   +   +   E + +  + P SL  +
Sbjct: 71  AFFFLASMINNTIREFTTSI----------PLYKETLAMKLNTLEAFIQKWNLPISLPEM 120

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           S   L       + R  SR  + F D   +I  +++ + F   +  +I  +L     H  
Sbjct: 121 S--ILDNFDPSVVMRLVSRLLLSFSDVVSNIFMLLLVVVFMLFESPTIKHKLAIAFSHNN 178

Query: 197 PAYWKKISRIVPKVIRSTFLGM---TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           P   K+    + +V+ S    +   T+++   G  +       GV   V   V+  ++  
Sbjct: 179 PKKIKQEEDHINRVVESIIRYLGVKTVVSALTGFCIWLLLESFGVQYAVLWAVLAFLLNY 238

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP  G+ ++   + +  LI  +   A  + +       I+   L P ++G  + L  L  
Sbjct: 239 IPNIGSILAGIPIVLQALILNDFPIAAGVTIGVVAINMIIGNILEPKMMGKTLGLSTLVV 298

Query: 313 FFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
              L+     +G +G+ +  P+ MAL   +
Sbjct: 299 TLSLLFWGWLLGTVGMLLSVPLTMALKIAL 328


>gi|266620765|ref|ZP_06113700.1| sporulation integral membrane protein YtvI [Clostridium hathewayi
           DSM 13479]
 gi|288867626|gb|EFC99924.1| sporulation integral membrane protein YtvI [Clostridium hathewayi
           DSM 13479]
          Length = 353

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 53/355 (14%), Positives = 112/355 (31%), Gaps = 29/355 (8%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE-------SST 60
            + I+   +   +  S  +L     P L A I      P       K             
Sbjct: 9   KKTILILGVTGAVYASFKYLLPLVIPFLIAYIFALALRPSAVWLEKKCRLPFKKKEIHLP 68

Query: 61  FLAV--IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-------VPRWLS 111
             A+  I  + +M LF   L +      +E       +                    L 
Sbjct: 69  LAAIGGIQILILMVLFGTLLYYGGRKLFMEANLFFDNLPQMINSLDHWLTGCCFFTENLL 128

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
            +P G     L    +   +++K  +  FL  N +  +  F     M  + +  +I+ + 
Sbjct: 129 RLPRGFLVKMLRDMLVGGGKAMKDAAMPFLMVNSMTVVRCFIEVTVMTVILFIATILSL- 187

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
                       +          +F   +  +   +  V  +       I      +  +
Sbjct: 188 ----------QEMEDIRMRRDNSIFRHEFALLGGRLSMVGSAWLKTQGSIMFLTMCICTA 237

Query: 232 AYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
             +L G    + LG+   ++  +P  G        +++ L+ G+      LF+   I  F
Sbjct: 238 GLFLMGNQYSLLLGIGIGLLDALPIFGTGTVLIPWALFRLVNGDWLYGIGLFVIYIICYF 297

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +  + +   ++   + L  L T   +  G++  GLLG  +GP+ + +I  + +  
Sbjct: 298 L-RQVMEAKIMADKVGLTPLETLISMYVGLQLFGLLGFILGPIGLLIIEDLVELY 351


>gi|257875839|ref|ZP_05655492.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
 gi|257810005|gb|EEV38825.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
          Length = 366

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/365 (11%), Positives = 125/365 (34%), Gaps = 25/365 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLY--------------FLKGFFAPVLSALIIGFTSWPIY 48
           E +   +     +I+ ++ ++++                   F PVL ++ I +   P +
Sbjct: 2   EFLKKSKIFAGLVIVCLLGIAVWIYSNILFVFRPLEAIFSSVFLPVLISIFIFYIFLPFF 61

Query: 49  SSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR 108
           +    + +   +       + ++    + +  +      EM   ++++          P 
Sbjct: 62  NWVKRRTK-KKSIALYATLLLIVFAAYLIIQVIGPALAYEMGRFINQI----------PV 110

Query: 109 WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII 168
            ++ +   +  S L         S+ I   +      I       +    I     + + 
Sbjct: 111 IINLVIDNIDHSYLEELFGPFIDSIDISQASNFALQFITGATNSLTSLISIVSHSAIVLF 170

Query: 169 FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLV 228
            + + L + ++DG  +   L +     +    +++     +   +   G  ++     + 
Sbjct: 171 TIPLLLVYMFKDGEKVPDFLANKTPKKYQGLMRQLCSDFHQAASAYIGGKLLVCSYVAVS 230

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
               + L G+ + + LG+I  ++ +IP   P    A +    +  +I  A  L +   I 
Sbjct: 231 SYLIFSLLGLQNALLLGLICGVLDIIPYFGPFIGAAPAFLFALSLDIRTAILLVVGITII 290

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
                  + P ++   + +  +   F L+     +G +G+ +   + ++I  +    +  
Sbjct: 291 QLGESYLVSPLVMNKVLHIHPIIAVFLLLIAGNLLGFVGMIVALPVYSIIMAMSGTLLRF 350

Query: 349 IKENK 353
            +E K
Sbjct: 351 FQERK 355


>gi|148825378|ref|YP_001290131.1| hypothetical protein CGSHiEE_01310 [Haemophilus influenzae PittEE]
 gi|229846428|ref|ZP_04466536.1| hypothetical protein CGSHi7P49H1_07145 [Haemophilus influenzae
           7P49H1]
 gi|148715538|gb|ABQ97748.1| hypothetical protein CGSHiEE_01310 [Haemophilus influenzae PittEE]
 gi|229810521|gb|EEP46239.1| hypothetical protein CGSHi7P49H1_07145 [Haemophilus influenzae
           7P49H1]
          Length = 348

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 55/346 (15%), Positives = 122/346 (35%), Gaps = 23/346 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+  +   + ++    + IIL  +        P L +L I     PI  +   ++     
Sbjct: 1   MQNNLNLHRTLLGIAAVIIILAGVKLAAEIVVPFLLSLFIAIICSPIIKAMTQRRVPH-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +LA+     ++ L    L+ L      E               IP  + L          
Sbjct: 59  WLAITLLFVLISLVFFFLVGLINSTAREF-----------TQSIPQYKVLLSQRVSDLTG 107

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L   +L    S + + E F  +  ++F+ R    F  +  +  + ++ +I    F   +
Sbjct: 108 LLQRFNLPFTLSRETIQENFDPSIIMNFVSRVLLNFSGVVSNVFVLVLVVI----FMLAE 163

Query: 181 GFSISQQLDSLG---EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             ++  +   +     H      + I R++  VI    +     ++  G+ +       G
Sbjct: 164 APTMKHKFAMVISSTPHDAVKEERHIDRVLQGVIGYLGIKSI-TSLLTGVGVFILLEACG 222

Query: 238 VPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           V   +    ++ ++  IP  G+ I+   + +  L+         + +       +V   +
Sbjct: 223 VQYAILWATLSFLLNYIPNIGSIIAAIPIIVQALLLNGFGVGFGVAVGVIAINMVVGNII 282

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            P ++G  + L  L  F  L+     +G +G+ +  P+ MAL   +
Sbjct: 283 EPKMMGQRLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMALKIAL 328


>gi|167035177|ref|YP_001670408.1| hypothetical protein PputGB1_4184 [Pseudomonas putida GB-1]
 gi|166861665|gb|ABZ00073.1| protein of unknown function UPF0118 [Pseudomonas putida GB-1]
          Length = 356

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 51/350 (14%), Positives = 121/350 (34%), Gaps = 18/350 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+    + + ++  +++F+   ++  L G  APVL+ +++ F    + ++    +  +  
Sbjct: 9   MQRYFSDEEAVVLAVLLFLAFTAVLTLGGMLAPVLAGMVLAFLMQGLVNALERVRVPTR- 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++     M    V +L L      ++  L +++          P  L      +   
Sbjct: 68  LAVMLVFALFMGALAVFMLVLVPLLWHQLITLFNEL----------PGMLGKWQSLLLLL 117

Query: 121 ELWTKHLSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                HL   + +    E+     G    +   F+     + ++  + ++ + I +FFF 
Sbjct: 118 PERYPHLVSDEQVLHAIESVRGEIGKFGQWALTFSLSSLPLLVNAMIYLVLVPILVFFFL 177

Query: 179 RDGFSISQQLDSLGEH---LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           +D   I + +         L      +++R +   IR   + + I  I   +   S    
Sbjct: 178 KDRELIGRWVSGYLPSQRALLNRVGSEMNRQIANYIRGKGIEILICGIATYIAFISLGLN 237

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
                 + +G+   +  +      +  T ++++    G+ F    L    AI   +    
Sbjct: 238 YAALLALLVGLSVVVPYVGAVVVTVPVTLIALFQWGWGDQF--IYLMTVYAIIQALDGNV 295

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           L P L    + L  +     ++      G  G+F    L  LI  +    
Sbjct: 296 LVPLLFSEAVSLHPVAIICAVLLFGGLWGFWGIFFAIPLATLIKAVLDAW 345


>gi|229158999|ref|ZP_04287055.1| hypothetical protein bcere0010_51700 [Bacillus cereus ATCC 4342]
 gi|228624418|gb|EEK81189.1| hypothetical protein bcere0010_51700 [Bacillus cereus ATCC 4342]
          Length = 314

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 1/153 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +   +   +          +IA+   ++   A W+ G P  + L ++  ++ +IP  G  
Sbjct: 158 EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVI 217

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS   + +     G I     + +   +   +    L P  +     LP   TF  L+  
Sbjct: 218 ISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFS 277

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              +G+ GL IG  +   +  +   +   ++++
Sbjct: 278 EHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 310


>gi|293396591|ref|ZP_06640867.1| PerM family permease [Serratia odorifera DSM 4582]
 gi|291420855|gb|EFE94108.1| PerM family permease [Serratia odorifera DSM 4582]
          Length = 372

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 54/334 (16%), Positives = 125/334 (37%), Gaps = 25/334 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           M  T+L  + +   +++ +I+V L  +K       P L A+       P+       +  
Sbjct: 20  MGRTILTDRTLRMALLLAMIVVILAGVKAASDIVVPFLLAVFFAIVLNPLVVVLERWRIP 79

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                A+   + V  + ++ +LF+   G              N+    +P++   +   M
Sbjct: 80  R----ALGIALLVAAVVVLLMLFIGMLGA-----------SLNEFARSLPQYRGMMAEKM 124

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
              + +    +   SL++++        ++ + R  S F     +  L ++ ++  LF  
Sbjct: 125 RQLQYYADRFNITISLEVIAHYIDPAAAMNLVTRLLSHFSGAMSNIFLLLMTVVFMLFEV 184

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
               + + Q LD       P       +   + +    +  T+I++  G+++     L  
Sbjct: 185 PLLPYKLQQALDK------PHEGIANIQRAVQGVTHYLVIKTVISLATGVIVWIFLALLE 238

Query: 238 VPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           V      G++  ++  IP  G+ I+     I  L+   + +A  +     +   ++   L
Sbjct: 239 VRFAFIWGLLAFLLNYIPNIGSVIAAIPPLIQALLFNGVGDAVAVAGGFVLINMVIGNML 298

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            P ++G  + L  L  F  L+     MG +G+ +
Sbjct: 299 EPRVMGRGLGLSTLVVFLSLIFWGWLMGPVGMLL 332


>gi|289766067|ref|ZP_06525445.1| permease [Fusobacterium sp. D11]
 gi|289717622|gb|EFD81634.1| permease [Fusobacterium sp. D11]
          Length = 357

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 55/331 (16%), Positives = 129/331 (38%), Gaps = 8/331 (2%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           KG+F  ++ A+ I     PI      K + +      ++ V V+ + ++  L +    + 
Sbjct: 31  KGYFMTLIMAIFIAILLEPIKKYLKKKSKINDVLAISLSIVFVVLIVVIISLIVIPEIIS 90

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            +K L       ++  + + + +++         + TK L    +  I + T   +N  +
Sbjct: 91  SLKVLNDIYPAISEKVLTIGKDVTNYLAEKNIYTVDTKELDDYFTKFISNNT---SNIKE 147

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP----AYWKKI 203
           F+  F        L +  ++I      F    D  ++ + L++L   +F      Y    
Sbjct: 148 FVLAFIGGLVNWTLGFT-NLIVAFTLAFLILLDKKNLMKTLENLIIIIFGVKNTPYVMNK 206

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
            ++   +  S   G  I++   GL +     + G P      ++  +  MIP    I   
Sbjct: 207 LKLSKDIFISYISGKIIVSFIVGLCVYIILLITGTPYAALSAILLGVGNMIPYVGSILGG 266

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
            V+ +L++         L +  AI   +    + P ++G  + L        ++      
Sbjct: 267 IVAFFLILLVAPIKTLILLIAIAIAQLVDGFIVGPKIIGDKVGLSTFWVMVSMIIFGNLF 326

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           GL+G+F+G  ++++I + + + + A +  ++
Sbjct: 327 GLVGMFLGTPILSIIRLFYIDLLKAKQGGEQ 357


>gi|226228425|ref|YP_002762531.1| hypothetical membrane protein [Gemmatimonas aurantiaca T-27]
 gi|226091616|dbj|BAH40061.1| hypothetical membrane protein [Gemmatimonas aurantiaca T-27]
          Length = 442

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 72/209 (34%), Gaps = 1/209 (0%)

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
           ++   F    L    + + M+    +   +       L +       A  + +   V  V
Sbjct: 220 QYLFSFVSSTLAALAAFVLMVFLAMYIGAEPHVYRGWLLATVPATSRAQVRIVLAEVATV 279

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           +R   +   I  +  GLV      L GV +  AL  I  +M  IP   PI     +I + 
Sbjct: 280 LRKWLVTQLIAMVVIGLVSMVVLLLLGVKAAFALAFIAGLMEFIPTVGPILAAIPAIAMG 339

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +   A  + L      FI +  L P+L+   + LP   T           G +GL +
Sbjct: 340 FVDSPEKAAIVALAYWGIQFIENNLLIPYLMRDGMDLPPAITLVAQTLMTLLFGFVGLMV 399

Query: 331 G-PVLMALIAVIWKESIMAIKENKEKISS 358
             P+  A++  +   +       +  I +
Sbjct: 400 AVPLTAAVLVPLRMMAEKENARERAMIQA 428


>gi|299822930|ref|ZP_07054816.1| integral membrane protein [Listeria grayi DSM 20601]
 gi|299816459|gb|EFI83697.1| integral membrane protein [Listeria grayi DSM 20601]
          Length = 343

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 48/341 (14%), Positives = 111/341 (32%), Gaps = 26/341 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  + + R ++  +++  LY ++     +L   I  +    + +  + +       + +I
Sbjct: 8   VKQKSVTRVLVFLLLVFVLYLVRSMIDIILMTFIFSYLITRLENFILKRVSIYRPIIVII 67

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
               ++    + L+      + ++ +L+                                
Sbjct: 68  LYALIVVCLTLLLVKYVPIIIEQLNQLIKFGNAFFTTK---------------------S 106

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +      +  +   F  T   D    F            ++I   ++   FF      + 
Sbjct: 107 NNQIIDYIVKMGNDFNITKYTDKGFTFLLSSLKSTGTVMMNIFIALMLSLFFSLGREHLL 166

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                         ++++     K +R+         +IA+   ++     W    P  +
Sbjct: 167 VFTKQFETSKIAFIYEEMKFFGVKFVRTFGKVIEAQFLIALVNCVLTTIVLWFLHFPQLL 226

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L ++  ++ +IP  G  +S   +SI     G I     + +   +   I    L P L+
Sbjct: 227 TLSIMIFLLGLIPVAGVVLSLIPLSIVGFSIGGIKYIIYVIILIVVIHAIESYILNPKLM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
                LP   TF  L+ G    G+ GL +G PV+M  + V+
Sbjct: 287 SAKTNLPVFYTFIILIFGEHFFGIWGLIVGIPVVMFFLDVL 327


>gi|254525545|ref|ZP_05137597.1| hypothetical protein P9202_194 [Prochlorococcus marinus str. MIT
           9202]
 gi|221536969|gb|EEE39422.1| hypothetical protein P9202_194 [Prochlorococcus marinus str. MIT
           9202]
          Length = 347

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 47/342 (13%), Positives = 109/342 (31%), Gaps = 5/342 (1%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
            +  ++ +  + ++ L+ F   ++ +L+I      + +      +   +    +    + 
Sbjct: 7   FKLAVILVASLIIWTLRDFLLLIICSLVISNIVCNLCNQIKKGLKIPRSLSLFLVLTVIS 66

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKV----VLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
            +     + +    + E  E++  +       N          + +  G   SE      
Sbjct: 67  VIVFTIFILVLPPFIKEFNEILDDIPNGLSKINILINTNLNKFNSLFYGEQ-SENIIDIF 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           S   ++  + +       I    +             L +IF++        +     + 
Sbjct: 126 SLINNIVTIPDASTIAKAIQESFKNLINIAGNLGSGLLKLIFVLAVSLMISIEPQQYKEN 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  L    +   ++ I       + +    M I ++  GL+      +  V   V+  +I
Sbjct: 186 ILLLIPKNYRNKFRNILEKCNIALANWTFSMVISSLSVGLLSLIVLSILDVKYVVSNALI 245

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             ++ +IP   P+      I + +  N +    +     I   I    + P ++     L
Sbjct: 246 AMVLNIIPNIGPVISGIFPISIALLDNFWKPLAVLGAYVIIQNIESYIIMPSIMKKKANL 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
               T     G     G LGL +   L  +I VI KES   I
Sbjct: 306 LPGLTLISQFGFTFIFGPLGLILSLPLAVVIQVIIKESFKDI 347


>gi|257460228|ref|ZP_05625331.1| transport protein [Campylobacter gracilis RM3268]
 gi|257442293|gb|EEV17433.1| transport protein [Campylobacter gracilis RM3268]
          Length = 342

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 46/341 (13%), Positives = 109/341 (31%), Gaps = 25/341 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E++     +M    + IIL  L   +    P L A+ I     P+       +       
Sbjct: 6   ESLKLQMSLMSVACVVIILAGLKAAQAIVVPFLLAIFITVLVSPLVLYVQKIRVGR--VF 63

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           + +         IV    + +  + E    + ++    +  +               S  
Sbjct: 64  SFLIITFAFVAIIVFFGAVIFDAIKEFSARLPELQAKFEEVL------------GGVSAK 111

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            ++      +  +  +       +  + R             + + FM+        +  
Sbjct: 112 LSRFGIELNAANLGIDPSEAAAQLSALLRKTGSIVSTGFFIFIMVSFMVF-------ESS 164

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I +++    +     +     +     ++   L  TI +   G ++G   W  GVP   
Sbjct: 165 VIDEKIRYFSQSSRATH--TFVKKFASSLKKYLLIKTIASACTGALIGLGLWALGVPYAA 222

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             G++  ++  IP  G+ ++        L   +I ++        +    +   + P  +
Sbjct: 223 LWGILAFVLNFIPTIGSIVAVFPTLFVTLATMDISSSIWTIAIYLVVNVAIGNIIEPRFL 282

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
           G  + L  +    GL+     +G+ GLF+  P+ M+L   +
Sbjct: 283 GQGLGLSTISVLAGLLLWGFVLGIGGLFLAVPLTMSLQIAL 323


>gi|218900567|ref|YP_002448978.1| hypothetical protein BCG9842_B5387 [Bacillus cereus G9842]
 gi|218545245|gb|ACK97639.1| putative membrane protein [Bacillus cereus G9842]
          Length = 314

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 58/153 (37%), Gaps = 1/153 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +   +   +          +IA+   ++   A W+ G P  + L ++  ++ +IP  G  
Sbjct: 158 EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVI 217

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS   + +     G I     + +   +   +    L P  +     LP   TF  L+  
Sbjct: 218 ISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFS 277

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              +G+ GL IG  +   +  +   +   I+++
Sbjct: 278 EHFLGVWGLIIGIPIFIFLLDVLDVTSDEIEKD 310


>gi|260582568|ref|ZP_05850358.1| molybdenum cofactor biosynthesis protein [Haemophilus influenzae
           NT127]
 gi|260094379|gb|EEW78277.1| molybdenum cofactor biosynthesis protein [Haemophilus influenzae
           NT127]
          Length = 348

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 56/346 (16%), Positives = 127/346 (36%), Gaps = 23/346 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+  +   + ++    + IIL  +        P L +L I     PI  +   ++     
Sbjct: 1   MQNNLNLYRTLLGIASVIIILAGVKLAAEIVVPFLLSLFIAIICSPIIKAMTQRRVPH-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +LA+     ++ L    L+ L      E  + +       Q+ + + + +SD+ G +   
Sbjct: 59  WLAITLLFVLISLVFFFLVGLINSTAREFTQSIP------QYKVLLSQRVSDLTGLLQRF 112

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L            +L ET  +      I  F SR  + F     ++  +++ + F   +
Sbjct: 113 NL---------PFTLLRETIQENFDPSIIMNFVSRVLLNFSGVVSNVFVLVLVVIFMLAE 163

Query: 181 GFSISQQLDSLG---EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             ++  +   +     H      + I R++  VI    +     ++  G+ +       G
Sbjct: 164 APTMKHKFAMVISSTPHDAVKEERHIDRVLQGVIGYLGIKSI-TSLLTGVGVFILLEACG 222

Query: 238 VPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           V   +    ++ ++  IP  G+ I+   + +  L+         + +       +V   +
Sbjct: 223 VQYAILWATLSFLLNYIPNIGSIIAAIPIIVQALLLNGFGIGFGVAIGVIAINMVVGNII 282

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            P ++G  + L  L  F  L+     +G +G+ +  P+ MAL   +
Sbjct: 283 EPKMMGQRLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMALKIAL 328


>gi|184154592|ref|YP_001842932.1| hypothetical protein LAF_0116 [Lactobacillus fermentum IFO 3956]
 gi|183225936|dbj|BAG26452.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
          Length = 346

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 67/199 (33%), Gaps = 1/199 (0%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           +G+       + FG + +   +S+I          +        L S     F       
Sbjct: 131 HGVTLAVTTLTNFGTLLVAVAMSVILSFFYTIELRQMNEFSKTFLSSQHLSWFFKDLDFF 190

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISF 262
            +               IA+    +   A +   +P   ALG++  IM+++P  G  IS 
Sbjct: 191 GKKFINTFGVVLEAQFFIALTNTALTMIALFFMKMPQIFALGLMVFIMSLVPVAGVIISL 250

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             +S+     G I     L +   +   I    L P  +    +LP   TF  L+     
Sbjct: 251 VPLSMVGYSVGGIRYIVYLIIVILVIHMIESYVLNPKFMSSRTELPIFYTFVVLLVSEHL 310

Query: 323 MGLLGLFIGPVLMALIAVI 341
            G+ GL +G  +   +  I
Sbjct: 311 FGVWGLIVGVPIFTFLLDI 329


>gi|150377348|ref|YP_001313943.1| hypothetical protein Smed_5234 [Sinorhizobium medicae WSM419]
 gi|150031895|gb|ABR64010.1| protein of unknown function UPF0118 [Sinorhizobium medicae WSM419]
          Length = 362

 Score = 60.2 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 56/328 (17%), Positives = 113/328 (34%), Gaps = 25/328 (7%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            + +   + ++YF     APV  AL I    WPI S   ++      F   I    +   
Sbjct: 32  ILTVIATVAAVYFSGVVLAPVACALFIIAVLWPIQSRLEARL--HRVFALAIVAALLFGT 89

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           F+V +  +        + L             +  WL     G+  +  W  +L     L
Sbjct: 90  FVVFMSVVTLSFGRIGRSLAMDAGQFQLLYNRLAEWLGG--HGIALAGFWADNLDSRLLL 147

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           +              +   ++R   +   + + ++++I+ L      G  I +  D    
Sbjct: 148 RA-------------LQGISARLNTMVSFWLVVLLYVILGLLEVSDLGARIRRLTDDNAA 194

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            +   +      +    IR   L  TI++   G+ + +     G+      G++   +  
Sbjct: 195 RIISGF-----ELAASRIRRYLLIRTIMSAATGIAVWALATAFGLRFAAEWGIVAFTLNY 249

Query: 254 IP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           IP  G A  +       L    +  +A  +F   +   FI+   + P + G  + +    
Sbjct: 250 IPFIGPAFATILPTCYALAQFQSPQSALIVFACLSTAQFIIGSYIEPRVAGNTLGISPSL 309

Query: 312 TFFGLVGGVRTMGLLGLFIG-PVLMALI 338
             F +       G+ G FIG P+ +A++
Sbjct: 310 VLFSVFLWTFLWGIFGAFIGVPITIAVL 337


>gi|289165205|ref|YP_003455343.1| membrane protein [Legionella longbeachae NSW150]
 gi|288858378|emb|CBJ12246.1| putative membrane protein [Legionella longbeachae NSW150]
          Length = 347

 Score = 59.9 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 97/255 (38%), Gaps = 19/255 (7%)

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++A++  +  FI+ L  +  +  ++++ +  K+   +Q+ + +P ++             
Sbjct: 58  LLASLVSVVTFIIVLAEVILFFQVQIRNIDFKLGHISQNMVSMPTYIQS----------- 106

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII----FMIIALFFFYR 179
              +S+   +    +T L       I + ++      L +  S++      IIALFFF  
Sbjct: 107 --SISNFFGISQEQQTSLLNELFTIIIKNSTVLFNHTLSFTTSLVASISIFIIALFFFLN 164

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
                 + L  + +  + +   +I   +  V+     G+ +I +   L+     W  GV 
Sbjct: 165 YRKFFKKFLFKVVKEKYHSNLNRILTRILSVVSRYIFGLLLIILIVALLNTLGLWFLGVE 224

Query: 240 SHVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
             +  GV+ A++ +IP               LL KG+   A  +     I   +    L 
Sbjct: 225 HAILFGVLAAVLILIPYIGIFIGSLLPALFVLLTKGSFGYAFAVIFIFIIVQVLEGNFLT 284

Query: 298 PFLVGGPIKLPFLPT 312
           P +VG  + +     
Sbjct: 285 PNIVGSQVSVNPFAV 299


>gi|206975848|ref|ZP_03236759.1| putative membrane protein [Bacillus cereus H3081.97]
 gi|206745942|gb|EDZ57338.1| putative membrane protein [Bacillus cereus H3081.97]
          Length = 314

 Score = 59.9 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 59/156 (37%), Gaps = 1/156 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +   +   +          +IA+   ++   A W+ G P  + L ++  ++ +IP  G  
Sbjct: 158 EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVI 217

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS   + +     G I     + +   +   +    L P  +     LP   TF  L+  
Sbjct: 218 ISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFS 277

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
              +G+ GL IG  +   +  +   +   ++++  K
Sbjct: 278 EHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKDAGK 313


>gi|168335194|ref|ZP_02693299.1| hypothetical protein Epulo_09133 [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 389

 Score = 59.9 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 113/296 (38%), Gaps = 11/296 (3%)

Query: 31  FAPVLSALIIGFTSWP---IYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
            +P+L  L++ +   P   +Y S +S+   S++ +  I+T   +   +  +       ++
Sbjct: 51  LSPLLIGLVLAYLMEPVVDLYISSLSRPHLSASRVRGISTFFAILTIVAIIGLFVLMIIM 110

Query: 88  EMKELVSK--VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            M++++ K  +   +Q       +          ++L T  +S      + +      + 
Sbjct: 111 NMQQVIHKTDIKGLSQTINAYISYFQAT-AETLVNQLATDEMSMKAREILTTIYTTINSW 169

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK--- 202
                + +  +        + I+F +I   +  +D   + + ++++   +F   W K   
Sbjct: 170 ATMFGQISMTWVADIGKNLIDIVFGVILAIYIMKDKPKLVKIVNNILSVIFTPKWYKRVT 229

Query: 203 -ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            I R +  V+     G  + A+   +++G    L  +   V +GV++ +  +IP   P+ 
Sbjct: 230 SIGRDLNSVLTGYVRGQILDALIMAVLVGIGLSLIXLDFAVIIGVVSGVFNIIPYFGPVV 289

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGL 316
              ++  L   G         +     L  +D   + P ++G  +KL  +     +
Sbjct: 290 GLLLAGILGAIGGGIQQAIYAMLIVFVLQQIDGFIIVPKILGTNVKLHPIVVLLAI 345


>gi|90424198|ref|YP_532568.1| hypothetical protein RPC_2700 [Rhodopseudomonas palustris BisB18]
 gi|90106212|gb|ABD88249.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           BisB18]
          Length = 368

 Score = 59.9 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/338 (12%), Positives = 95/338 (28%), Gaps = 4/338 (1%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           +L   ++       + + ++ G     +                 +  V +  LF   L+
Sbjct: 32  LLFFAWYFAATLFLIFAGILFGVFLNAVSELLGRLVGGGHGLRMTLVCVLLTGLFAGVLV 91

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT-KHLSHPQSLKILSE 138
                   +   L + +     +   V  +L +        +L T +        + L  
Sbjct: 92  LGGSTIADQAASLSNTIKSQIVN---VKSFLDEHGVDTSFLDLGTPEPPGTAAQPRNLPS 148

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                +G   I     +  +  +    +   +I     F        + L       +  
Sbjct: 149 AGAIASGGGAIVSQTLKLILGTIGAVGNFFIVIFLGLCFGAQPAIYRKGLLRSVPARYRL 208

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              +I   + ++++   L   I       V      + G+P    LG+   ++A IP   
Sbjct: 209 KATEIVTAIGEMLKRWLLAQMITMAAVFAVTSIGLTIIGIPGAFILGIQAGLLAFIPTIG 268

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            +    + +   +          F        +    L P +    I +P    F   + 
Sbjct: 269 ALLGGLIIVLASLASGWVAVASAFALFLAVHAMESYLLTPLIQQQAIDIPPGTLFATQIL 328

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
                GL GL +   LMA+  V+         E+   +
Sbjct: 329 LGIVFGLWGLALALPLMAIAKVVMNHLSDDSAEHGAAV 366


>gi|113478156|ref|YP_724217.1| hypothetical protein Tery_4793 [Trichodesmium erythraeum IMS101]
 gi|110169204|gb|ABG53744.1| protein of unknown function UPF0118 [Trichodesmium erythraeum
           IMS101]
          Length = 344

 Score = 59.9 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/335 (11%), Positives = 103/335 (30%), Gaps = 12/335 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           +  + I+L   + ++     + +A+++      +   F ++         +        +
Sbjct: 9   FFSLLIVLYIFWEIRQLLLLIFAAIVLATALNRLVQKF-NRWGLERNLAVIATLSLAALI 67

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +V LL +    + + ++LV+ +          P   +++   +         L      
Sbjct: 68  MLVFLLLIVPPFISQFQKLVALI----------PDVFTEVRSQLIQLYQQRPDLFPAPPT 117

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                   +  G      F   F        L ++ + +    F  +  +  +    L  
Sbjct: 118 ATNMLVQTQKFGTQLFSNFLKIF-SNTFTVFLQVLLVFVLTIMFLVNAQAYRRVGLLLFP 176

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
             +     +I       + + F G+ I ++    + G    L  +   +   ++  ++  
Sbjct: 177 SFYRRRADEIISKCEVALGNWFGGIVINSVFVATLSGIGLLLLQIDLVLTHALLAGLLNF 236

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P       I +      +    + +   I   I    L P ++   + L    T 
Sbjct: 237 IPNIGPTLSVVFPIMIAFLDTPWKIAAVGILYIIIQNIESYWLSPVVMAKQVSLLPAITL 296

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
              +      G+LGL +   L  +     +E++  
Sbjct: 297 GAQIFFTTFFGILGLILALPLTVVAKTWIEETLFK 331


>gi|322371729|ref|ZP_08046272.1| hypothetical protein ZOD2009_19548 [Haladaptatus paucihalophilus
           DX253]
 gi|320548614|gb|EFW90285.1| hypothetical protein ZOD2009_19548 [Haladaptatus paucihalophilus
           DX253]
          Length = 365

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 66/204 (32%), Gaps = 18/204 (8%)

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD-------SLGEHLFPAYWKKI 203
             A++   I     L++   I   FF  RD   ++           ++  +L        
Sbjct: 133 TTAAKSVGIISRSLLTLFLSISFAFFALRDDDRLAAWFRGEMGEDSAVVAYLTAVDEDLA 192

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISF 262
                 V+    +G+    +  G     A      P      ++T +   +P     + +
Sbjct: 193 IVYFGNVLTVLLVGVAATVLYNGF-AAIAPGAVSFPIPTVFALLTGLATFVPIVVGKLVY 251

Query: 263 TAVSIYLLIKGN-------IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
             +++Y + +          F A    +   +   +    +RP++ G           F 
Sbjct: 252 VPLTLYFVWQALRVNTRLLWFPAVFFVVSLLLLDLLPQTVVRPYISGRTT--HTGLVMFA 309

Query: 316 LVGGVRTMGLLGLFIGPVLMALIA 339
            + G    G  G+F+GP+++  + 
Sbjct: 310 YILGGVLFGWYGIFLGPLVLVFVV 333


>gi|227514228|ref|ZP_03944277.1| permease [Lactobacillus fermentum ATCC 14931]
 gi|227087392|gb|EEI22704.1| permease [Lactobacillus fermentum ATCC 14931]
          Length = 346

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 66/199 (33%), Gaps = 1/199 (0%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           +G+       + FG + +   +S+I          +        L S     F       
Sbjct: 131 HGVTLAVTTLTNFGTLLVAVAMSVILSFFYTIELRQMNEFSKTFLSSQHLSWFFKDLDFF 190

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISF 262
            +               IA+    +   A +   +P   ALG++  I +++P  G  IS 
Sbjct: 191 GKKFVNTFGVVLEAQFFIALTNTALTMIALFFMKMPQIFALGLMVFIFSLVPVAGVIISL 250

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             +S+     G I     L +   +   I    L P  +    +LP   TF  L+     
Sbjct: 251 VPLSMVGYSVGGIRYIVYLIIVILVIHMIESYVLNPKFMSSRTELPIFYTFVVLLVSEHL 310

Query: 323 MGLLGLFIGPVLMALIAVI 341
            G+ GL +G  +   +  I
Sbjct: 311 FGVWGLIVGVPIFTFLLDI 329


>gi|77164943|ref|YP_343468.1| hypothetical protein Noc_1450 [Nitrosococcus oceani ATCC 19707]
 gi|254433254|ref|ZP_05046762.1| conserved domain protein, putative [Nitrosococcus oceani AFC27]
 gi|76883257|gb|ABA57938.1| Protein of unknown function UPF0118 [Nitrosococcus oceani ATCC
           19707]
 gi|207089587|gb|EDZ66858.1| conserved domain protein, putative [Nitrosococcus oceani AFC27]
          Length = 350

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 40/333 (12%), Positives = 96/333 (28%), Gaps = 16/333 (4%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           +  I L    +       V + +++             +   S  +   +    +    +
Sbjct: 24  VAIIFLFFAGYFAHLLLLVFAGILLAVFLRGTAGWLSDRVPLSMGWALTLVVFLLFYCMV 83

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +  L L         +L   +  A +                   E   +H +    L  
Sbjct: 84  IGALLLGPTIANNFNDLAQIIPQAVE----------------QLREFVKRHEAADGLLDR 127

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
             +          +    +      L    S + +     +F  +     + +  L    
Sbjct: 128 FLQQDKSVFLTQEMFTRIAGVFSSLLGLAASFLIIFANGLYFSVEPNVYIRGVIYLFPKR 187

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
             A ++ +   +  V+R   +G        G++        G+PS  AL  + A+++ IP
Sbjct: 188 KQARFRAVLSELGHVLRWWLVGRIASMAVVGVLTWGGLLWLGIPSAAALAFLAAVLSFIP 247

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P+     ++ +       +A  + L   I   +    + P +    I LP       
Sbjct: 248 NIGPLVSVVPAVLVGWMQGPMSALYVILLYTIIQTLESYLITPLIQRRAIMLPPALILTV 307

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            +      G+ G+ +      +I V+ +   + 
Sbjct: 308 QLAMGMAFGVFGVLLATPFAVVILVLVQMLYVE 340


>gi|311111549|ref|ZP_07712946.1| LOW QUALITY PROTEIN: putative membrane protein [Lactobacillus
           gasseri MV-22]
 gi|311066703|gb|EFQ47043.1| LOW QUALITY PROTEIN: putative membrane protein [Lactobacillus
           gasseri MV-22]
          Length = 340

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 66/198 (33%), Gaps = 5/198 (2%)

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ----LDSLGEHLFPAYWKKISR 205
                          ++    +I  FF+  +  S+++     L+S               
Sbjct: 124 VTILVHALTNVGTLTIAFFMSLIMSFFYTIELDSMNEFSHTFLNSRHLSWLFKDIAYFGN 183

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTA 264
                          IA+    +      +  +P  +ALG++  I+++IP  G  IS   
Sbjct: 184 KFVNTFGVVLEAQFFIALCNTAMTMICLIIMKMPQIIALGLMVFILSLIPVAGVIISLIP 243

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           +S      G I     +F+   I   I    L P  +    +LP   TF  L+ G   +G
Sbjct: 244 LSFVAYSVGGIRYVIYIFIVIMIIHAIEAYILNPKFMSSKTELPIFYTFVVLLAGEHFLG 303

Query: 325 LLGLFIGPVLMALIAVIW 342
             GL +G  +   +  I 
Sbjct: 304 TWGLIVGVPIFTFLLDIL 321


>gi|299782761|gb|ADJ40759.1| Permease [Lactobacillus fermentum CECT 5716]
          Length = 346

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 66/199 (33%), Gaps = 1/199 (0%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           +G+       + FG + +   +S+I          +        L S     F       
Sbjct: 131 HGVTLAVTTLTNFGTLLVAVAMSVILSFFYTIELRQMNEFSKTFLSSQHLSWFFKDLDFF 190

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISF 262
            +               IA+    +   A +   +P   ALG++  I +++P  G  IS 
Sbjct: 191 GKKFINTFGVVLEAQFFIALTNTALTMIALFFMKMPQIFALGLMVFIFSLVPVAGVIISL 250

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             +S+     G I     L +   +   I    L P  +    +LP   TF  L+     
Sbjct: 251 VPLSMVGYSVGGIRYIVYLIIVILVIHMIESYVLNPKFMSSRTELPIFYTFVVLLVSEHL 310

Query: 323 MGLLGLFIGPVLMALIAVI 341
            G+ GL +G  +   +  I
Sbjct: 311 FGVWGLIVGVPIFTFLLDI 329


>gi|168260688|ref|ZP_02682661.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168818600|ref|ZP_02830600.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205344563|gb|EDZ31327.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205350119|gb|EDZ36750.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|320087994|emb|CBY97756.1| AI-2 transport protein tqsA Transport of quorum-sensing signal
           protein [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 349

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 48/321 (14%), Positives = 115/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + IIL  L+        +L AL       P+ + FI +  +       +A   V
Sbjct: 14  LLKLASLVIILAGLHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVKRP-----LAITIV 68

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L       + E ++ +   ++               +    L  + L   
Sbjct: 69  VVVMLIVLTALVGVLAASLNEFIAMLPKYSKE--------------LTRKVLHLQELMPF 114

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    D I  F +           SI+ +++ + F   +   +  +L  
Sbjct: 115 LNLHMSPERMLRGMDSDKIMLFTTTLMTGVSGAMASIVLLVMTVVFMLFEVRHVPYKL-R 173

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G ++     L G+   +  GV+  +
Sbjct: 174 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGAIIWLGLALMGIQFALMWGVLAFL 232

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  G+ IS     I  L+    +    +     +   ++   + P ++G  + +  
Sbjct: 233 LNYVPNIGSVISAVPPMIQALLFNGFYECVLVGALFLVVHMVIGNIMEPRMMGHRLGMST 292

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           L  F  L+     +G +G+ +
Sbjct: 293 LVVFLSLLVWGWLLGPVGMLL 313


>gi|332173123|gb|AEE22377.1| protein of unknown function UPF0118 [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 360

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 76/200 (38%), Gaps = 3/200 (1%)

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +++I     L           A+           + + +++ + F   +  S  +++   
Sbjct: 114 NIQINKNQLLSYLDPGAAMNMATSLLTSLGGVLTNFLLILLIVVFMLFEAESFPRKIHIA 173

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
            +   P    +        +++     T++++G GLV+G   +  GV  ++   ++  ++
Sbjct: 174 LDD--PNMKMRQIDKFLLSVKNYLAIKTLVSLGTGLVIGLWLYFLGVDHYLLWAMMAFLL 231

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             IP  G+ ++     +  L++     A    L   +   ++   + P  +G  + L  L
Sbjct: 232 NYIPNIGSILAAIPAVLLALVQLGPGIAGLTALGFVVTNTVMGNIIEPRYMGRGLGLSTL 291

Query: 311 PTFFGLVGGVRTMGLLGLFI 330
             F  L+     +G +G+ +
Sbjct: 292 VVFLSLIFWGWLLGTVGMLL 311


>gi|170741713|ref|YP_001770368.1| hypothetical protein M446_3553 [Methylobacterium sp. 4-46]
 gi|168195987|gb|ACA17934.1| protein of unknown function UPF0118 [Methylobacterium sp. 4-46]
          Length = 647

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 57/198 (28%), Gaps = 2/198 (1%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +      +    L    +   +++           +  +   L                 
Sbjct: 168 VLAALGTYAAPVLHPLATTGLILLFSVVILLQREDLRNRAIRLAGSGDLRRTTAAIDDAT 227

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
             +   FL    +    G+V+G   W+ G+PS V  GVI  I+  +P    +    + + 
Sbjct: 228 ARLTRFFLAQLGLNTAFGVVIGLGLWIIGIPSPVLFGVIAGILRFVPYIGAVIGALLPLV 287

Query: 269 LLIKGNIFNATCLFLWGAIELF--IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           L    +      L       +   +    + P L G    L  +             G +
Sbjct: 288 LAAAVDPGWTMVLATAALFLVVEPVAGHVVEPLLYGHSTGLSPVAVILAATVWAFLWGPV 347

Query: 327 GLFIGPVLMALIAVIWKE 344
           GL +   L   + V+ + 
Sbjct: 348 GLVLATPLTVCLVVLGRH 365


>gi|26987969|ref|NP_743394.1| hypothetical protein PP_1234 [Pseudomonas putida KT2440]
 gi|148546507|ref|YP_001266609.1| hypothetical protein Pput_1264 [Pseudomonas putida F1]
 gi|24982683|gb|AAN66858.1|AE016314_5 permease PerM, putative [Pseudomonas putida KT2440]
 gi|148510565|gb|ABQ77425.1| protein of unknown function UPF0118 [Pseudomonas putida F1]
 gi|313497586|gb|ADR58952.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1]
          Length = 356

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 50/344 (14%), Positives = 119/344 (34%), Gaps = 18/344 (5%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + + ++  +++F+   ++  L G  APVL+ +++ F    + ++    +  +     ++ 
Sbjct: 15  DEEAVVLAVLLFLAFTAVLTLGGMLAPVLAGMVLAFLMQGLVNALERVRVPTR-LAVMLV 73

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
               M    V +L L      ++  L +++          P  L      +        H
Sbjct: 74  FALFMGALAVFMLVLVPLLWHQLITLFNEL----------PGMLGKWQSLLLLLPERYPH 123

Query: 127 LSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           L   + +    E+     G    +   F+     + ++  + ++ + I +FFF +D   I
Sbjct: 124 LVSDEQVLHAIESVRGEIGKFGQWALTFSLSSLPLLVNAMIYLVLVPILVFFFLKDRELI 183

Query: 185 SQQLDSLGEH---LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            + +         L      +++R +   IR   + + I  I   +   S          
Sbjct: 184 GRWVSGYLPRQRTLLNRVGSEMNRQIANYIRGKGIEILICGIATYIAFISLGLNYAALLA 243

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           + +G+   +  +      +  T ++++    G+ F    L    AI   +    L P L 
Sbjct: 244 LLVGLSVVVPYVGAVVVTVPVTLIALFQWGWGDQF--IYLMTVYAIIQALDGNVLVPLLF 301

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
              + L  +     ++      G  G+F    L  LI  +    
Sbjct: 302 SEAVSLHPVAIICAVLLFGGLWGFWGIFFAIPLATLIKAVLDAW 345


>gi|90022162|ref|YP_527989.1| hypothetical protein Sde_2517 [Saccharophagus degradans 2-40]
 gi|89951762|gb|ABD81777.1| protein of unknown function UPF0118 [Saccharophagus degradans 2-40]
          Length = 361

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/343 (13%), Positives = 116/343 (33%), Gaps = 27/343 (7%)

Query: 5   MLNPQGIMRWMIM----FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M     I R++++     I++  +   +    P L +L I   + P              
Sbjct: 1   MEVQSPIARFLLVAATFVIVVAGMRAAESILVPFLLSLFIAVIATPPLIWMQ-----RKG 55

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             + IA + V+C  ++  + +       + +              +P +   +       
Sbjct: 56  VPSSIAMLLVICSIVIGGILIGVIVGASIADFRQ----------DLPGYQQRLTVLTADF 105

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +  + L     L  L E+F  +  +       ++FG +  +  L ++ ++  L      
Sbjct: 106 FVQLQALGIDVELGHLRESFNPSAALSLAGNTLAQFGNMMTNAFLILLLVVFIL------ 159

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +  +         P             +       T ++   GL++    W   +  
Sbjct: 160 AEEVGFRDKIKYSFKTPEKTLAAIEKFTSGVNQYVAIKTTMSALTGLIIMCWLWFMKLEY 219

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            V  G++  ++  +P  G+ ++     +  L++  + +A  +        F+V   + P 
Sbjct: 220 FVLWGLLAFLLNYVPTFGSILAAVPAVLLALVQLGVGDALLVGAAYLAVNFVVGNVIEPR 279

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
           ++G  + L  L  F  LV     +G +G+ +  P+ M +   +
Sbjct: 280 VMGKGLDLSALVVFLSLVFWGWVLGPIGMLLSIPLTMTVKIAL 322


>gi|103486810|ref|YP_616371.1| hypothetical protein Sala_1324 [Sphingopyxis alaskensis RB2256]
 gi|98976887|gb|ABF53038.1| protein of unknown function UPF0118 [Sphingopyxis alaskensis
           RB2256]
          Length = 408

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 89/307 (28%), Gaps = 25/307 (8%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISK------KEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           FF P+ +A++I     P+      +          S    +    + + + +VP    F 
Sbjct: 66  FFLPLTAAIVIAIALVPLLEWLERRGVPSALAAFLSLAAFLAIINAALAIIVVPATGWFA 125

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                +  + S +         + R++                     S+   SE   + 
Sbjct: 126 RLPESIPRIQSNLAPLIDFYATLQRFVDR----------------TLMSVASGSEATAQA 169

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA-YWKK 202
                       F        + + F ++ +FFF      + +           A    +
Sbjct: 170 VAATAPTSVVDYFISSAPAAAIQLFFAVLVIFFFLAGWTRLRRGTIRRRGSFDGAMQTAR 229

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS- 261
           + + V          +T+I    GL++    W  G+PS    G I +I   +P   PI  
Sbjct: 230 VIQNVVDATADYLATITMINAMLGLIVALLLWALGMPSPFMWGGIVSICNFVPYLGPIVA 289

Query: 262 -FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
                   L+    +  A    L       +    + P ++G  + +  L     L    
Sbjct: 290 SVLLALGGLMTFDAVGLALLPALIFIGVHLVEANLITPLVLGKRLTINPLLILVSLSFWG 349

Query: 321 RTMGLLG 327
              G  G
Sbjct: 350 WVWGTPG 356


>gi|217962928|ref|YP_002341506.1| hypothetical protein BCAH187_A5618 [Bacillus cereus AH187]
 gi|217065881|gb|ACJ80131.1| putative membrane protein [Bacillus cereus AH187]
          Length = 314

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 1/153 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +   +   +          +IA+   ++   A W+ G P  + L ++  ++ +IP  G  
Sbjct: 158 EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVI 217

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS   + +     G I     + +   +   +    L P  +     LP   TF  L+  
Sbjct: 218 ISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFS 277

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              +G+ GL IG  +   +  +   +   ++++
Sbjct: 278 EHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 310


>gi|229094550|ref|ZP_04225617.1| hypothetical protein bcere0021_52530 [Bacillus cereus Rock3-42]
 gi|229124941|ref|ZP_04254116.1| hypothetical protein bcere0016_52190 [Bacillus cereus 95/8201]
 gi|229187667|ref|ZP_04314804.1| hypothetical protein bcere0004_51990 [Bacillus cereus BGSC 6E1]
 gi|228595821|gb|EEK53504.1| hypothetical protein bcere0004_51990 [Bacillus cereus BGSC 6E1]
 gi|228658505|gb|EEL14170.1| hypothetical protein bcere0016_52190 [Bacillus cereus 95/8201]
 gi|228688797|gb|EEL42628.1| hypothetical protein bcere0021_52530 [Bacillus cereus Rock3-42]
          Length = 321

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 1/153 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +   +   +          +IA+   ++   A W+ G P  + L ++  ++ +IP  G  
Sbjct: 165 EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVI 224

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS   + +     G I     + +   +   +    L P  +     LP   TF  L+  
Sbjct: 225 ISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFS 284

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              +G+ GL IG  +   +  +   +   ++++
Sbjct: 285 EHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 317


>gi|163939774|ref|YP_001644658.1| hypothetical protein BcerKBAB4_1797 [Bacillus weihenstephanensis
           KBAB4]
 gi|229132797|ref|ZP_04261642.1| hypothetical protein bcere0014_17260 [Bacillus cereus BDRD-ST196]
 gi|163861971|gb|ABY43030.1| protein of unknown function UPF0118 [Bacillus weihenstephanensis
           KBAB4]
 gi|228650624|gb|EEL06614.1| hypothetical protein bcere0014_17260 [Bacillus cereus BDRD-ST196]
          Length = 339

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 56/341 (16%), Positives = 124/341 (36%), Gaps = 25/341 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +G  R++++ I+++ LY LK     +L   I+ F           K + +   +    
Sbjct: 9   RSRGFQRFLVLIILVLVLYGLKSMINLILITFILTFLMDRFQKFISKKLKVNRKVVIAGL 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++   +  L        +++ +L+ +  L  Q+           P      +     
Sbjct: 69  YIVLVTFIVTTLYKYLPVLTIQISQLIYQFKLFFQN-----------PPDNEIIKYALST 117

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           ++  +  K + +      G+D I +  +  G + L   LS+I  +  L     +   I  
Sbjct: 118 INGMEVSKYIEQ------GVDVIYQSIANIGKVSLQILLSLILSLFFL----LEKERIIA 167

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 +     ++++I+    +  RS         +IA+   ++   A  + G P  + 
Sbjct: 168 FTSKFKDSKLKIFYEEIAYFGERFARSFGKVIEAQFLIAVVNCVLTVIALVILGFPQLLV 227

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L V+  ++ +IP  G  IS   + I     G +     + ++  +   +    L P  + 
Sbjct: 228 LAVMVFLLGLIPVAGVIISLFPLCIIAYNVGGVVYVVYILVFITVIHALESYLLNPKFMS 287

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               LP   TF  L+     +G+ GL IG  +   +  +  
Sbjct: 288 AKTNLPVFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLD 328


>gi|302548373|ref|ZP_07300715.1| putative integral membrane protein [Streptomyces hygroscopicus ATCC
           53653]
 gi|302465991|gb|EFL29084.1| putative integral membrane protein [Streptomyces himastatinicus
           ATCC 53653]
          Length = 401

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 48/329 (14%), Positives = 105/329 (31%), Gaps = 18/329 (5%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + F +L     +      V  AL+      P+                 +A    + + +
Sbjct: 83  LAFTVLGRFQLVA---VAVFLALVGTALLRPLADVLARWLP--RPLAVALAVFGSLLVVL 137

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L  +      E   LV +          + RWL   P  +    L          L  
Sbjct: 138 GLLALVGSAAAGEAGRLVGEFRGGIGR---ITRWLEGPPFHVRHRTL--------TGLHD 186

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              +F+  +    I R  S  G   ++   + +  +    FF   G  + +         
Sbjct: 187 RISSFVSAHRATLISRALSSAGR-VVEALTAAVLALFCSLFFVHSGDGMWRWFREQLPEA 245

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
             + W +  R           G+ ++A     ++G A  L  VP  + L ++      IP
Sbjct: 246 ARSPWDRAGRAAWNTFAGYTRGIILVAAANAALVGLALLLLRVPLALPLTLLVFFFTFIP 305

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIKLPFLPTFF 314
                   AV+  + + G       + L   + +  ++   L P ++G  ++L  +    
Sbjct: 306 LIGSPIALAVATVVALAGRGPVIAAVVLVLIVVVGQIEGHVLHPLVMGWAVRLHPVVVAI 365

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            ++ G    G++G  +   ++++   + +
Sbjct: 366 SVIAGGIVAGVVGAIVAVPMVSVAWSVTR 394


>gi|254294786|ref|YP_003060809.1| hypothetical protein Hbal_2432 [Hirschia baltica ATCC 49814]
 gi|254043317|gb|ACT60112.1| protein of unknown function UPF0118 [Hirschia baltica ATCC 49814]
          Length = 367

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/334 (14%), Positives = 108/334 (32%), Gaps = 28/334 (8%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I   LY     FAP   A+ +             +  +   +LA  + V ++    + +
Sbjct: 15  VITYGLYVGADIFAPFALAVFLWLVIEGFARLMQERIPKLPRWLAQTSAVLIVLGIALTV 74

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
             +F  G+ +            ++       +++I      +E++ +      +   LS 
Sbjct: 75  TLIFIDGLNDFA----------KNAGAYEARINEI-----LTEIYARFNIFTVAPPDLSR 119

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                    F+         +   + L    MI   F F  +    ++  +   +    +
Sbjct: 120 MLFNEENTKFVQPILDSVQGLASSFVL---IMIYIAFLFLAEKNWPTKLDNIFPDTKTRS 176

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             +++   V K +       T+I+    ++      + G+ + +    I   +  IP   
Sbjct: 177 QAREVGHQVRKSMEEYLWVQTVISGIITVITYITLLILGLDNALFWAFIVFFLNYIPTIG 236

Query: 259 PIS--FTAVSIYLLI--------KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I   F      L               NA  +    +I  F +   ++P ++G  + L 
Sbjct: 237 SIVAAFLPGLFALAQPEWPAYMPTDATLNALIVLASVSIWQFAIGNFVQPRMMGESLNLS 296

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            L     L       G+ G+F+   L  L+ +++
Sbjct: 297 ALVVLVSLAIWGALWGIPGMFLSAPLTVLMMILF 330


>gi|165872524|ref|ZP_02217157.1| putative membrane protein [Bacillus anthracis str. A0488]
 gi|190568947|ref|ZP_03021849.1| putative membrane protein [Bacillus anthracis Tsiankovskii-I]
 gi|196036082|ref|ZP_03103482.1| putative membrane protein [Bacillus cereus W]
 gi|196041035|ref|ZP_03108332.1| putative membrane protein [Bacillus cereus NVH0597-99]
 gi|196045511|ref|ZP_03112742.1| putative membrane protein [Bacillus cereus 03BB108]
 gi|227818208|ref|YP_002818217.1| hypothetical protein BAMEG_5735 [Bacillus anthracis str. CDC 684]
 gi|164711747|gb|EDR17291.1| putative membrane protein [Bacillus anthracis str. A0488]
 gi|190560014|gb|EDV13997.1| putative membrane protein [Bacillus anthracis Tsiankovskii-I]
 gi|195991249|gb|EDX55217.1| putative membrane protein [Bacillus cereus W]
 gi|196023718|gb|EDX62394.1| putative membrane protein [Bacillus cereus 03BB108]
 gi|196028203|gb|EDX66813.1| putative membrane protein [Bacillus cereus NVH0597-99]
 gi|227006365|gb|ACP16108.1| putative membrane protein [Bacillus anthracis str. CDC 684]
          Length = 314

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 1/153 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +   +   +          +IA+   ++   A W+ G P  + L ++  ++ +IP  G  
Sbjct: 158 EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVI 217

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS   + +     G I     + +   +   +    L P  +     LP   TF  L+  
Sbjct: 218 ISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFS 277

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              +G+ GL IG  +   +  +   +   ++++
Sbjct: 278 EHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 310


>gi|91778780|ref|YP_553988.1| membrane transporter [Burkholderia xenovorans LB400]
 gi|91691440|gb|ABE34638.1| Putative membrane transport protein [Burkholderia xenovorans LB400]
          Length = 680

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 60/163 (36%), Gaps = 7/163 (4%)

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +  +   L           +     + +   F+    +  G G+V+G+  +L GVPS 
Sbjct: 217 DDLRDRAIRLFGSRDLHRTTTVMDEAARRLSRYFVSQLGLNAGVGVVIGTGLFLIGVPSP 276

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG----AIELFIVDKTLR 297
           +  G++ A++ ++P      + + ++   +   +     + +W          +V + + 
Sbjct: 277 ILWGILAALLRLVPYVG--IWISATLATALAAAVSPGWSMAIWSLALFVTVELLVGQVVE 334

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIA 339
           P L G    L         +      G +GL +  P+ + L+ 
Sbjct: 335 PLLYGRSTGLSPFSVVVAAIFWSWIWGPIGLILSTPLTLCLLV 377


>gi|299135051|ref|ZP_07028242.1| protein of unknown function UPF0118 [Afipia sp. 1NLS2]
 gi|298590028|gb|EFI50232.1| protein of unknown function UPF0118 [Afipia sp. 1NLS2]
          Length = 376

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/336 (11%), Positives = 89/336 (26%), Gaps = 10/336 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
              +L+  +        + S +++G     + +              ++  + +  +   
Sbjct: 28  FAALLIFAWEFAATLFLIFSGVLLGVALTAMTNLLKKVMPGPHAVRLLVICLLLATMMAG 87

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW---------LSDI-PGGMWASELWTKH 126
                      +   L   +     +                L+ I P     S      
Sbjct: 88  IFTLGGSTIAQQATALSGTIKSQIVNLKTFLESYGFDASYLDLNTISPTSPRTSTTPATT 147

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            + P     L       +G   I     +  +  +    +   ++     F        +
Sbjct: 148 PALPNMQHNLPSAGALASGGGAIVSQTLKLILGTVGAVGNFFIVLFLGLAFAAQPGVYRK 207

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L ++         + +   +   +    +   I      +V      + G+P    LGV
Sbjct: 208 GLIAMSPRAIRPQIETVIDRIGSTLERWLIAQMITMTVVFVVTWLGLLVVGIPGAFILGV 267

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
              ++  IP    +    + +   I          F+       +    L P +    I 
Sbjct: 268 QAGLLTFIPTVGALLGGLIIVLASISSGWVAIGSAFVLLLGVHALESYILTPIIQREAID 327

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +P    F   +      G+ GL +   +MA++ VI 
Sbjct: 328 IPPATLFAFQILLGVVFGVWGLALALPVMAVVKVIL 363


>gi|257872535|ref|ZP_05652188.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257806699|gb|EEV35521.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
          Length = 366

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 43/365 (11%), Positives = 125/365 (34%), Gaps = 25/365 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLY--------------FLKGFFAPVLSALIIGFTSWPIY 48
           E +   +     +I+ ++ ++++                   F PVL ++ I +   P +
Sbjct: 2   EFLKKSKIFAGLVIVCLLGIAVWIYSNILFVFRPLEAIFSSVFLPVLISIFIFYIFLPFF 61

Query: 49  SSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR 108
           +    + +   +       + ++    + +  +      EM   ++++          P 
Sbjct: 62  NWVKRRTK-KKSIALYATLLLIVFAAYLIIQVIGPALAYEMGRFINQI----------PV 110

Query: 109 WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII 168
            ++ +   +  S L         S+ I   +      I       +    I     + + 
Sbjct: 111 IINLVIDNINHSYLEELFGPFIDSIDISQASNFALQFITGATNRLTSLISIVSHSAIVLF 170

Query: 169 FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLV 228
            + + L + ++DG  +   L +     +    +++     +   +   G  ++     + 
Sbjct: 171 TIPLLLVYMFKDGEKVPDFLANKTPKKYQGLMRQLCSDFHQAASAYIGGKLLVCSYVAVS 230

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
               + L G+ + + LG+I  ++ +IP   P    A +    +  +I  A  L +   I 
Sbjct: 231 SYLIFSLLGLQNALLLGLICGVLDIIPYFGPFIGAAPAFLFALSLDIRTAILLVVGITII 290

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
                  + P ++   + +  +   F L+     +G +G+ +   + ++I  +    +  
Sbjct: 291 QLGESYLVSPLVMNKVLHIHPIIAVFLLLIAGNLLGFVGMIVALPVYSIIMAMSGTLLRF 350

Query: 349 IKENK 353
            +E K
Sbjct: 351 FQERK 355


>gi|256829276|ref|YP_003158004.1| protein of unknown function UPF0118 [Desulfomicrobium baculatum DSM
           4028]
 gi|256578452|gb|ACU89588.1| protein of unknown function UPF0118 [Desulfomicrobium baculatum DSM
           4028]
          Length = 354

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/317 (14%), Positives = 106/317 (33%), Gaps = 13/317 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
            APV+++++I F    +   F+ +       + V+     M    V +L L    + ++ 
Sbjct: 38  LAPVIASVVISFLLDGL-VRFLVRFRWPRMLVVVLVFGLFMLFLAVMILALVPLLVSQIT 96

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           +L+  +             L+ +P        +           + S T   +     + 
Sbjct: 97  DLIDNIPWIISK---AQNALTHLP------RQYPILTEAQVQTVVDSLTVQFSQYGQQVL 147

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
            F+         + + ++ M I +FFF +D   I   L              +   V   
Sbjct: 148 AFSLSSVRSVFSFVVYMVLMPIMVFFFLKDKDVILDWLCGFLPQ-DHTLASTVWMDVKTQ 206

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
             +   G     +       +++   G+   + L ++  +  +IP  GA +    V I  
Sbjct: 207 AGNYVRGRIWEVLIVWGATYASFLFFGLDYAMLLSLLVGLSVIIPYIGAVVVTVPVLIIA 266

Query: 270 LIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
            I+          +   + + ++D   L P L+ G + L  + +   ++      G  G+
Sbjct: 267 YIQWGFDAQFTWTMIVYLVIQLLDANLLVPLLLSGAVNLHPIASITAILIFGGIWGFWGV 326

Query: 329 FIGPVLMALIAVIWKES 345
           F    L +L+  +    
Sbjct: 327 FFAIPLASLVQSVLGVW 343


>gi|149186422|ref|ZP_01864735.1| hypothetical protein ED21_23073 [Erythrobacter sp. SD-21]
 gi|148830011|gb|EDL48449.1| hypothetical protein ED21_23073 [Erythrobacter sp. SD-21]
          Length = 392

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 46/340 (13%), Positives = 105/340 (30%), Gaps = 25/340 (7%)

Query: 16  IMFIILVSLYFLKGF--------FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           ++ +I + ++F   F        F PV++A+I+     P+                 +++
Sbjct: 36  LVVLIGLGVFFALPFVLSIGSVVFLPVVTAIILTVILSPLADKLTGL-----GLPNALSS 90

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + +F   LL      +     L  ++    Q    V    +++           + L
Sbjct: 91  LVSLLVFFAILLLALALILQPAITLFDELPDLFQ---QVGERFTELRNQFAWVAQINEQL 147

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +         E  L T      P              +  I  ++  FF       + Q+
Sbjct: 148 AALVDRGEGREVVLAT------PSLLEEVAFATPTIVVETILTLLMAFFMIEARVRLRQK 201

Query: 188 LDSLGEHL-FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           L              ++ R V   + +  L + +I  G G+V+    W  GV + +  G 
Sbjct: 202 LLFGRTSFGTSIKAARVLREVQDRVAAYILTVGLINAGVGVVVALGAWALGVDAPIMWGG 261

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           + AI+  +P   P     +     I     +               +    + P ++G  
Sbjct: 262 LAAILNFLPYIGPTIMIGLLALFGIGTTETVLLGLVPATAYLALHTVEANVITPSILGAR 321

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             +  +     L       G+ G  +   ++ ++  ++  
Sbjct: 322 FTMNPVMILIALSYFTWVWGIFGALLSVPILLMLTALFDH 361


>gi|309779244|ref|ZP_07674007.1| permease [Ralstonia sp. 5_7_47FAA]
 gi|308922048|gb|EFP67682.1| permease [Ralstonia sp. 5_7_47FAA]
          Length = 422

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 38/314 (12%), Positives = 94/314 (29%), Gaps = 25/314 (7%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           LV L + + F  PV   +++ F   P+                ++     +         
Sbjct: 41  LVFLQWARAFLVPVTLGVVLAFALNPVVVWLRRCYVPRPLAAGIVVLGLWIA-----GAM 95

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW---------ASELWTKHLSHPQ 131
           L +     +  +  ++ +A +        +    GG +                    P 
Sbjct: 96  LVFGMQDGVSAMADRLPVAAERMAQAVDGMRGHMGGAFDKMRDVTVALEHAAEGVQGKPA 155

Query: 132 SLKILSETFLKTNGIDFIPRFASRF-------GMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                       +      +                      ++ +   ++F    G ++
Sbjct: 156 PAPAKRSPATPVSAEPAAAQPVLPLREFLWTGSASLFALAGQLVVVSFLVYFLLASGQAL 215

Query: 185 SQ-QLDSLGEHLFPA-YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +  + ++G  L       ++  ++   I+ + L +    I  G++   A+ L G+    
Sbjct: 216 KRKWVRAVGNTLSEKKRAVRMMAVIGTQIQYSLLVLFATNIMLGVLTTVAFVLLGMEDAA 275

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFL 300
             G+ TA++  +P  G+ +   A  I   ++ G   +A  +     +   +V   L  +L
Sbjct: 276 VWGLATAVLHFVPYLGSVVIAVASGIGAYLQMGAWSDALVVAGVTLLLATLVGTLLVTWL 335

Query: 301 VGGPIKLPFLPTFF 314
                KL     + 
Sbjct: 336 QSRASKLDPCVVYI 349


>gi|288917432|ref|ZP_06411798.1| protein of unknown function UPF0118 [Frankia sp. EUN1f]
 gi|288351135|gb|EFC85346.1| protein of unknown function UPF0118 [Frankia sp. EUN1f]
          Length = 367

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 48/334 (14%), Positives = 110/334 (32%), Gaps = 21/334 (6%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            + +  +   +   A    AL++  T  P+ +    +       +AV  T     +    
Sbjct: 25  VVTIAGMRAFRDTLAATFLALVLVVTCHPLQACLRRRGAPGWVGVAVTMTTIYTIM---- 80

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
                         +V+ V  A +    +P + +             + L         +
Sbjct: 81  -----------AGLVVALVAAAARLVTLLPDYAAQF---DKLLNQAARRLEDLGVTPEQA 126

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            T +    +  +                +++F++  +FF   DG   +++LD   E    
Sbjct: 127 STTVGRLDLSKLSGLLQNILSGLTSAGSNLMFLVALVFFLAIDGDQFARRLDVAAE--SR 184

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-G 256
                  R   +  R      ++  +    +   A     +P  +  G+++ I   IP  
Sbjct: 185 PLLVDALRAFTRNTRRYLAVSSLFGLVVAALDVLALHWLAIPLPLLWGLLSFITNYIPNI 244

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           G  +     ++  L++G +     +    +    +V   ++P +VG  ++L    TFF +
Sbjct: 245 GFLVGLLPPALLGLLEGGVARMLWVVAVYSSINMVVQSFIQPKVVGNVVRLSATLTFFSV 304

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           V     +G LG  +   +  L   +  +S  A +
Sbjct: 305 VFWTFVLGPLGALLAVPMTLLTKALLIDSDPAAQ 338


>gi|255027256|ref|ZP_05299242.1| hypothetical protein LmonocytFSL_14618 [Listeria monocytogenes FSL
           J2-003]
          Length = 323

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 112/340 (32%), Gaps = 25/340 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  ++ V LY L+     +L   I  F    + +  + +       +
Sbjct: 5   EKLKENDTARRVLVFVLLGVVLYLLRSMIDLILLTFIFAFLVTRLENVILKRVRVPRKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V     V ++      + ++ +LV  +V    +  P    +     G      
Sbjct: 65  VIVLYSLVAVFLYVAIVHFLPILINQISQLVDSLVKLYNN--PSDNTIVKWIVGFLKESN 122

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             K+L                 G+DFI    S  G + L + L++I  +    FF  +  
Sbjct: 123 IQKYLQ---------------AGVDFIIASLSGIGSVGLSFFLALILSL----FFSLEKE 163

Query: 183 SISQQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            ++              +K+     +              +IA+    +   A +L   P
Sbjct: 164 RVTSFTGQFMTSKVGFIFKEAAFFGKKFVSTFGVVLEAQLMIALVNTFITTIALYLMDFP 223

Query: 240 SHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             ++L ++  ++ +IP    I     + +     G   +   + +   I   I    L P
Sbjct: 224 QLLSLSIMVFVLGLIPVAGVIISCIPLVLIAYSVGGFQDVVYILITVVIVHAIETYILNP 283

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
            L+     LP   TF  L+      G+ GL +G  +   +
Sbjct: 284 KLMSSKTNLPVFYTFIILIFSETFFGVWGLIVGIPVFVFL 323


>gi|228942585|ref|ZP_04105119.1| hypothetical protein bthur0008_52140 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228975517|ref|ZP_04136071.1| hypothetical protein bthur0003_52620 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228784198|gb|EEM32223.1| hypothetical protein bthur0003_52620 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228817084|gb|EEM63175.1| hypothetical protein bthur0008_52140 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 321

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 1/153 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +   +   +          +IA+   ++   A W+ G P  + L ++  ++ +IP  G  
Sbjct: 165 EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVI 224

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS   + +     G I     + +   +   +    L P  +     LP   TF  L+  
Sbjct: 225 ISLFPLCMIAYNIGGIMYVVYILIIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFS 284

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              +G+ GL IG  +   +  +   +   ++++
Sbjct: 285 EHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 317


>gi|71281155|ref|YP_269883.1| putative permease [Colwellia psychrerythraea 34H]
 gi|71146895|gb|AAZ27368.1| putative permease [Colwellia psychrerythraea 34H]
          Length = 357

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 47/341 (13%), Positives = 110/341 (32%), Gaps = 12/341 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           +P  +   +I+  I + +        PV  A+ + F      +  +      S+   V+ 
Sbjct: 15  DPHAVTLVVILVCIALFIALFSNLLMPVFVAIALAFLLDLPVNKLMQSSMSRSSATVVVV 74

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
              +    +  L  +          L     + +Q    +       P  +  S++ +  
Sbjct: 75  VTFLSFSLLAVLGLMPIIWKQSSNLLQEVPHMISQGQGYLLTLPEKYPDFVHVSQIESFI 134

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +    +L    +  L+ +                +   + +I + + +FFF +D   +  
Sbjct: 135 VMVNDNLLEWGQVALRASLNSI---------SDIVALMVYLILVPLMVFFFLKDKTELMS 185

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +            K +S+ + + I +   G  I  I  G     A+    +   + LGV
Sbjct: 186 SIAHFLPKERRMAIK-VSQEMNQQILNYIRGKVIEIIIVGASTTIAFIFLDLQYALLLGV 244

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGP 304
           +  +  ++P  GA +    V +  L +  I +     +     +  +D   + P L    
Sbjct: 245 LVGLSVLVPYVGATVVTLPVLLVALFQFGISSEFGYVMLAYGLIQAIDGNVIVPLLFSEA 304

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           + L  +     ++      G  G+F    L  L+  +    
Sbjct: 305 VNLHPVVIIIAVIFFGGLWGFWGIFFAIPLATLVKAVINAW 345


>gi|228918050|ref|ZP_04081579.1| hypothetical protein bthur0012_52470 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228841593|gb|EEM86708.1| hypothetical protein bthur0012_52470 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 314

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 1/153 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +   +   +          +IA+   ++   A W+ G P  + L ++  ++ +IP  G  
Sbjct: 158 EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVI 217

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS   + +     G I     + +   +   +    L P  +     LP   TF  L+  
Sbjct: 218 ISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFS 277

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              +G+ GL IG  +   +  +   +   ++++
Sbjct: 278 EHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 310


>gi|222085285|ref|YP_002543815.1| permease protein [Agrobacterium radiobacter K84]
 gi|221722733|gb|ACM25889.1| permease protein [Agrobacterium radiobacter K84]
          Length = 390

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 47/342 (13%), Positives = 108/342 (31%), Gaps = 17/342 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + + + L  +Y +     PV  A+++G     + +  +SK        AV+ + +V  + 
Sbjct: 61  IFLILALAGIYMMSIILIPVTLAVVVGMIL-GLAAEKLSKLGVPRILNAVLLSSAVALVI 119

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            + +  L        +E            +P    +            W           
Sbjct: 120 FLFINALAGPLARLAQEGPDVFQRTVDRLMPFLERIK-----------WLHITPQTFESG 168

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
            +S   L  N  + +    +      +     +IF    + F           + +    
Sbjct: 169 PMSINVLLENTGNVLHLVTNSLTPAIVQ---GLIFFAALMLFLAGRASLRKTLIMTFVSR 225

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                  +I   V +V+   F    +I  G G+ +    +  G+ + +  GV   + + I
Sbjct: 226 TSRLTAIRIINAVEQVLGFYFATAALIYAGLGITMTIIAYAGGLSAPILWGVFAFLSSFI 285

Query: 255 P--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P  G A ++       ++   +I  A    +        V+  + P ++G   +L     
Sbjct: 286 PFLGIATMTIALAIAGIITHDDIIFALAPAVVFFSIHLAVENLVFPAVMGRQWELNPFVV 345

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           F  ++      G +G  +   L  ++  +  E  +  K   +
Sbjct: 346 FLAIIFWTWMWGAVGAMLALPLSLVVMTVVNELFIEEKVQPQ 387


>gi|323339562|ref|ZP_08079837.1| membrane protein [Lactobacillus ruminis ATCC 25644]
 gi|323093042|gb|EFZ35639.1| membrane protein [Lactobacillus ruminis ATCC 25644]
          Length = 355

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 48/353 (13%), Positives = 122/353 (34%), Gaps = 24/353 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L    + R++++  I+  LY  +   + +L   I  F    +  S     +  S  + + 
Sbjct: 8   LENVRLRRFVVLLGIIGILYASRSIISVILLTFIFTFLITRLIMSIHRHVKIPSQLIVIA 67

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             ++++ L  + +       + + + +V+ V+   Q+                A+E+   
Sbjct: 68  VYLALIGLIYLAVTVYVPKLISQSEAMVASVLQFYQNPP------------KGANEVINF 115

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
              +   L ++++        + + ++ +  G +      ++   ++  FFF  +   ++
Sbjct: 116 ISGYVGKLDVMNQV---KGSFEIVMKYVTSIGSMGF----TLFMSLLLSFFFTIEERQMA 168

Query: 186 QQLDSLGEH----LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
           +   S                 ++I             +IAI   ++  +      +P  
Sbjct: 169 EFSKSFLTSGPFAWIFQDIYYFAKIFVNTFGVVMEAQFMIAIINTVITTTCLGFMKMPQL 228

Query: 242 VALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            +L ++  ++++IP    I     +       G + +   + +   +   I    L P L
Sbjct: 229 FSLSLMIFVLSLIPVAGVIVSAVPLCFIGYTVGGLRDVFYIIVLLIVVHAIESYVLNPKL 288

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +    +LP   TF  L       G  GL +G  +   +  +     +  K NK
Sbjct: 289 MSSRTELPIFYTFVVLFVSEHLFGTWGLIVGIPIFTFMLDVLGVKPVHTKHNK 341


>gi|157149065|ref|YP_001456384.1| hypothetical protein CKO_04904 [Citrobacter koseri ATCC BAA-895]
 gi|157086270|gb|ABV15948.1| hypothetical protein CKO_04904 [Citrobacter koseri ATCC BAA-895]
          Length = 349

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 47/321 (14%), Positives = 113/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  L+        +L AL       P+ + FI +          +A   V
Sbjct: 14  LLKLASLVVILAGLHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVNRP-----VAITLV 68

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L       + E V+ +   N+                    L  + +   
Sbjct: 69  VVVMLIVLTALIGVLAASINEFVAMLPKYNKELT--------------RKVLHLQEMLPF 114

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    D +  F +           S++ +++ + F   +   +  +L  
Sbjct: 115 LNLHMSPERLLQRIDSDKLMTFTTTLMTGLSGAMASVVLLVMTVVFMLFEVRHVPYKL-R 173

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L  +   +  GV+  +
Sbjct: 174 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGVIVWLGLALMDIQFALMWGVLAFL 232

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  G+ IS     I  L+    +    +     +   I+   L P ++G  + +  
Sbjct: 233 LNYVPNIGSVISAVPPMIQALLFNGFYECVLVGALFLVVHMIIGNILEPRMMGHRLGMST 292

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           L  F  L+     +G +G+ +
Sbjct: 293 LVVFLSLLVWGWLLGPVGMLL 313


>gi|123968466|ref|YP_001009324.1| permease [Prochlorococcus marinus str. AS9601]
 gi|123198576|gb|ABM70217.1| Predicted permease [Prochlorococcus marinus str. AS9601]
          Length = 347

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 115/348 (33%), Gaps = 5/348 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N     + +++ I L+ ++ L+ F   ++ +L+I      + +      +   +    +
Sbjct: 1   MNSSSYFKLVVILITLLIVWTLRDFLLLIICSLVISNIVCNLSNQIQKGLKIPRSISLFL 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELV----SKVVLANQHGIPVPRWLSDIPGGMWASE 121
               +  +     + +    + E  E++    + +   N          +++  G   SE
Sbjct: 61  VLAVISVIIFTIFILVLPPFIKEFNEILVDIPNALSKINILINTNLNKFNNLFYGKQ-SE 119

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 S   ++  + +       I    +             L +IF++        + 
Sbjct: 120 NVIDIFSLINNVVTIPDVSTIAKAIQESFKNLINIAGNLGSGLLRLIFVLAVSLMISIEP 179

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               + +  L    +   ++ I       + +    M I ++  GL+      +  V   
Sbjct: 180 KQYKENVLLLIPKNYRNKFRNILEKCNIALANWTFSMVISSLSVGLLSLIVLSILDVKYV 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           V+  +I  ++ +IP   P+      I + +  N +    +     I   I    + P ++
Sbjct: 240 VSNALIAMVLNIIPNIGPVISGIFPISIALLDNFWKPLAVLGSYIIIQNIESYIIMPSIM 299

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
                L    T     G     G LGL +   L  +I V+ KES   I
Sbjct: 300 KKKANLLPGLTLISQFGFTFIFGPLGLILSLPLAVVIQVLIKESFKDI 347


>gi|315645830|ref|ZP_07898951.1| hypothetical protein PVOR_10189 [Paenibacillus vortex V453]
 gi|315278591|gb|EFU41905.1| hypothetical protein PVOR_10189 [Paenibacillus vortex V453]
          Length = 389

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 53/323 (16%), Positives = 106/323 (32%), Gaps = 13/323 (4%)

Query: 14  WMIMFIILVSLYFLKGFFA-------PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
              + +I++++Y +   F+       PV  + ++     P+ S F+ ++     F A I+
Sbjct: 12  AFDIGLIVLTVYLVMYIFSKLYQIAAPVFLSFLVFLIIEPL-SKFLHRRGLPKPFAAAIS 70

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +  + + +  L       + +   L   +  A    I        I        L    
Sbjct: 71  VLLFLLIILGILFGAGALIVSQFMNLQENL-PAYTATIQKHFSEGLIFLQSKLEALPPDL 129

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                        F +     F        G  F  +  S    II  FF   +  S  +
Sbjct: 130 TERVNGYFQDITAFAQGAAESFFHYIVGFMGS-FSSFITSFGVAIILAFFLSIEIGSWRR 188

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
                    F   +  +   V K I S       +     +++     + G  + +++ +
Sbjct: 189 IAKEKTPKTFKMAFVFLKENVFKAIGSYLKAQMKLVSITFVIVYIGLLILGTGNSLSIAL 248

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           I A+  ++P  G P+      +YL I GN   A  L +  A+ + I  + L P + G  I
Sbjct: 249 ICAVFDVLPLLGVPVILIPWIVYLFIVGNTGLAIGLIVLLAVVM-ISRQLLEPKITGNSI 307

Query: 306 KLPFLPTFFGL-VGGVRTMGLLG 327
            +          +  +   G+ G
Sbjct: 308 GVSSAFLMLSFMMISLSIFGVAG 330


>gi|114778648|ref|ZP_01453464.1| hypothetical protein SPV1_12495 [Mariprofundus ferrooxydans PV-1]
 gi|114551113|gb|EAU53674.1| hypothetical protein SPV1_12495 [Mariprofundus ferrooxydans PV-1]
          Length = 343

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 47/340 (13%), Positives = 109/340 (32%), Gaps = 32/340 (9%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFT-SWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
             +++  +        P L A  I      P+Y         +    + +A + +  + +
Sbjct: 14  FVVVVAGMQAAASLLIPFLLAAFIAIICLSPLY------WLHARGLPSGVAVLIIALVLV 67

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +    +  +    + +    + +           L +   G                L++
Sbjct: 68  LTGTLIGVFVGASLSDFSHNLPVFQARLQTQTDGLLNWLSGF--------------GLQL 113

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S+              A +      +   +   +++ + F   +  ++  +   +G H 
Sbjct: 114 DSQLLRDNFSPSLAMGMAGKLLAGLGNALANTFLIVLTVIFLLLEASALPHKWTLMGRHA 173

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                +  SR +  V  S       +++  G V+     L GV   +  G+I  +   +P
Sbjct: 174 --PSGEHFSRFIASV-NSYLAIKGWVSLATGAVIAIWLALLGVDYPLLWGLIAFLFNFVP 230

Query: 256 -GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G+ I+     +  L++    +A    +       I+   + P  +G  + L  L  F 
Sbjct: 231 NIGSIIAAVPAVLLALVQLGPGSALAAGVGYLAVNIIMGNVVEPRYMGRGVGLSTLVVFV 290

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            LV         G  +GPV M L   +     +A++ N +
Sbjct: 291 SLV-------FWGWILGPVGMLLSVPLTMIVKLALEANDD 323


>gi|227495011|ref|ZP_03925327.1| membrane protein [Actinomyces coleocanis DSM 15436]
 gi|226831463|gb|EEH63846.1| membrane protein [Actinomyces coleocanis DSM 15436]
          Length = 357

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 48/342 (14%), Positives = 110/342 (32%), Gaps = 16/342 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M         ++   I   L   +    P+++A I+ +         + K    S     
Sbjct: 1   MTLQNLTFAVLLAIAIGWLLVIGQNIILPIIAAFIVVYIFV-ETDKLVGKLPGISKLPDW 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +    +  +FI  L  L     + ++EL++      ++ + +   ++D+ G         
Sbjct: 60  VRKFVIYVVFIGLLAGLISLFTVTIQELIAHSGTYQKNLVQIFSQVTDLVGEEHLPSW-- 117

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                    KI+    +         + +S  G I        +  I   F F       
Sbjct: 118 ----DELRAKIIGAINIPAWLGWVTAQLSSASGFI-------FLIAIYVAFIFGERSSFS 166

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +   +  + +  A  ++I   +   +       T++ +  GLV        G+      
Sbjct: 167 QKLTAAFPDPVKAARAQQIISEINTKVGQYLGAKTLVNVILGLVSYVIMLAFGLDYAGFW 226

Query: 245 GVITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            ++ A++  IP    I      V + ++   +   +  LF+       I+   + P LVG
Sbjct: 227 ALLIALLNYIPYIGSIFGVLLPVLLSVVQFVSWPWSLALFVLLITAQTIMGNMVEPLLVG 286

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             +          L       G+ G  +   + +++ +I+ E
Sbjct: 287 RKVNQSAFVVLVALAFWSSLWGVSGAILAVPMTSILGIIFGE 328


>gi|157413298|ref|YP_001484164.1| permease [Prochlorococcus marinus str. MIT 9215]
 gi|157387873|gb|ABV50578.1| Predicted permease [Prochlorococcus marinus str. MIT 9215]
          Length = 347

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 48/342 (14%), Positives = 110/342 (32%), Gaps = 5/342 (1%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
            +  ++ I  + ++ L+ F   ++ +L+I      + +      +   +    +    + 
Sbjct: 7   FKLAVILITSLIIWTLRDFLLLIICSLVISNIVCNLCNQIKKGLKIPRSLSLFLVLTVIS 66

Query: 72  CLFIVPLLFLFYYGMLEMKELV----SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
            +     + +    + E  E++    + +   N          + +  G   SE      
Sbjct: 67  VIVFTIFILVLPPFIKEFNEILVDIPNGLSKINILINTNLNKFNSLFYGEQ-SENIIDIF 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           S   ++  + +       I    +             L +IF++        +     + 
Sbjct: 126 SLINNIVTIPDASTIAKAIQESFKNLINIAGNLGSGILKLIFVLAVSLMISIEPQQYKEN 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  L    +   ++ I       + +    M I ++  GL+      +  V   V+  +I
Sbjct: 186 ILLLIPKNYRNKFRNILEKCNIALANWTFSMVISSLSVGLLSLIVLSILDVKYVVSNALI 245

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             ++ +IP   P+      I + +  N +    +     I   I    + P ++     L
Sbjct: 246 AMVLNIIPNIGPVISGIFPISIALLDNFWKPLAVLGAYVIIQNIESYIIMPSIMKKKANL 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
               T     G     G LGL +   L  +I VI KES   I
Sbjct: 306 LPGLTLISQFGFTFIFGPLGLILSLPLAVVIQVIIKESFKDI 347


>gi|268610403|ref|ZP_06144130.1| predicted permease [Ruminococcus flavefaciens FD-1]
          Length = 403

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/312 (11%), Positives = 95/312 (30%), Gaps = 13/312 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK------EESSTFLAVIATV 68
           ++  +I +++  ++     + +A I           +   K               ++ +
Sbjct: 28  LLGKVIGIAVSAIRPMLIGLAAAYIFNIIMTGFEKRYFPNKDTKFVNVSRRPVCLALSFL 87

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + + I+ +  +        + L  ++    Q        L  +       +  +    
Sbjct: 88  ITIAILILIMYIVIPEIANAFRVLYHEIPPNFQKLQKFA--LEKLKEYPEIQQQISGLQF 145

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S+   + + L +     +       G +       I   I+   +       + +  
Sbjct: 146 DWASIIGKATSILTSGVAGILTSAWGAIGTLT-STVADIGLGIVFAIYVLIRKDKLFKDT 204

Query: 189 DSLGEHLFPAYW----KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             +    F          +  I  +  RS F+G  I A+  G++      +  +P     
Sbjct: 205 KRICTVSFGKDKYRKISHVYHIANETFRSFFVGQFIDALLLGMLCFIGMTILRLPYAAMA 264

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           G +  + A IP         +S ++++  +   A    ++      I    + P +VG  
Sbjct: 265 GTLVGVTAFIPIVGAFIGAGISAFIILTVDPMQAVIFIIFLLCIQQIEGNLIYPKVVGDS 324

Query: 305 IKLPFLPTFFGL 316
           + +P +  F  +
Sbjct: 325 VGVPGIWVFAAV 336


>gi|126180375|ref|YP_001048340.1| hypothetical protein Memar_2437 [Methanoculleus marisnigri JR1]
 gi|125863169|gb|ABN58358.1| protein of unknown function UPF0118 [Methanoculleus marisnigri JR1]
          Length = 341

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 44/330 (13%), Positives = 101/330 (30%), Gaps = 26/330 (7%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + I+L  +        P+L A      + P       ++       A      ++ +F  
Sbjct: 20  VVIVLAGIRVATPILGPLLVAAFFAMITAPAMKWLTRRRVP-PLLAAATVVAGLIGIFAG 78

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            ++FL       ++ L         H   +  +                       + I 
Sbjct: 79  MIIFLGAAFTGFIRTLPQYQASLEAHAAVLADY----------------------GIDIG 116

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
             T        FI + A+       +  +    + + + F   +   ++  L        
Sbjct: 117 RFTIWDYIDQGFILQQATELARQIGNIAVDAFLVFVGIGFLLLEAPRLAAVLARHLGPES 176

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
             Y  +      K++    +  T + +  G+  G    L GV   V  G I  +++ +P 
Sbjct: 177 APY--RHLSQSGKILIDYVVVRTKVNLITGVGTGLFLTLLGVDFAVLWGFIAFVLSYVPY 234

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G  ++    ++  LI+     A  +    A+     +    P + G  + L      F 
Sbjct: 235 IGLVVAAIPPTLLALIEFGPAGAVAVIAAVALIDAAAENLFLPRIAGRELNLSPFVVLFS 294

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           ++     +G +G+F+   L   + +  +  
Sbjct: 295 VIFWGFILGAVGIFLAIPLTIAVKLFLESW 324


>gi|258423517|ref|ZP_05686407.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|257846218|gb|EEV70242.1| conserved hypothetical protein [Staphylococcus aureus A9635]
          Length = 361

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 44/330 (13%), Positives = 105/330 (31%), Gaps = 13/330 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P L +  + +   P  +             A I T+ +    I+ L+  F   ++   
Sbjct: 41  FLPFLISGFLFYICLPFQNLLEKVGFPR---WASITTIMLALFAIIGLIVAFVAPIIISN 97

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
                                 +       E  T  +++         T + +N + +I 
Sbjct: 98  INNLISQTPALQKEAEQIIKFALAQMDKLPEDVTSRITNMVKSMGDGVTNILSNSLQYIT 157

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              S            +I +   L +  +D       +    +     ++  +   +   
Sbjct: 158 SLISTI--------FLLIMVPFFLIYMLKDHEKFIPAVAKFFKGERKVFFVDLLTDLNFT 209

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYL 269
           ++S   G   +++  G+ L   Y +  +P    L +   +  +IP  G+ +SF   +I L
Sbjct: 210 LKSYIQGQVTVSVILGVFLYIGYSIIDLPYIPLLVLFAGVANLIPFLGSWLSFAPAAI-L 268

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            I  +      + +   I   +    + P ++G  + +  L     ++      G   + 
Sbjct: 269 GIIDSPTTFIWVCIITLIAHQLEGNIITPNVMGKSLSIHPLTIIVVILAAGDLGGFTLVL 328

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISSN 359
           I   L A++  +        +   +K +S+
Sbjct: 329 IAVPLYAVLKTVVSNIFKYRQRIIDKANSD 358


>gi|227889120|ref|ZP_04006925.1| permease [Lactobacillus johnsonii ATCC 33200]
 gi|227850349|gb|EEJ60435.1| permease [Lactobacillus johnsonii ATCC 33200]
          Length = 349

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 54/345 (15%), Positives = 116/345 (33%), Gaps = 17/345 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            + R + + +I++ LY  +     +L   I  +    +      K     +  A +  V 
Sbjct: 13  TVHRLVALCLIILVLYAARSMMNTILLTFIFTYLIVHLIRFTQKKI---PSLPAQVIVVL 69

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              L I     +++   + +  L+ +++  +   I   +         W S   + ++S+
Sbjct: 70  AYLLVI---ALIYFAITIYVPILIKQIIKMSHSLIKFYQS----DDMNWVSRYLSHYISN 122

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            +            +G+  +    + FG + + + +S+I                   L 
Sbjct: 123 SEITTQ------AKHGVTILVHALTNFGTLTIAFFMSLIMSFFYTIELNSMIEFSHTFLQ 176

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           S                              IA+    +      +  +P  +ALG++  
Sbjct: 177 SRHLSWLFEDVAYFGNKFVNTFGVVLEAQFFIALCNTAMTIICLIIMRMPQIIALGLMVF 236

Query: 250 IMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I+++IP  G  IS   +S+     G +     +F+   I   I    L P  +    +LP
Sbjct: 237 ILSLIPVAGVIISLIPLSLVAYSVGGLRYVIYIFIVIMIIHAIEAYILNPKFMASKTELP 296

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              TF  L+ G   +G  GL +G  +   +  I     +  K+ +
Sbjct: 297 IFYTFVVLLVGEHFLGTWGLIVGVPIFTFLLDILGVKSVKKKKPQ 341


>gi|257389051|ref|YP_003178824.1| hypothetical protein Hmuk_3012 [Halomicrobium mukohataei DSM 12286]
 gi|257171358|gb|ACV49117.1| conserved hypothetical protein [Halomicrobium mukohataei DSM 12286]
          Length = 387

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 54/350 (15%), Positives = 109/350 (31%), Gaps = 33/350 (9%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +   ++      +  +    +  + I + + P+Y     +  +   F A  A  +    
Sbjct: 16  TLTAALVGTLGLVVYSYIGTFVFGIFIYYAARPVYRRL-RRVVDRPGFAAAGALFAFEIP 74

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           F+    +L + G+ E       +  +   G  V  W   IP          + ++ P + 
Sbjct: 75  FLAVTGYLLFLGIKE-------LERSAGAGAEVVAWFLPIPAAE-----LERAVADPATY 122

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG- 192
               +       +             FL   L I       F+  RDG  I+  L     
Sbjct: 123 VSSFDAASINEIVSTGGDVLGPVSTFFLHLALGIAIA----FYLLRDGEHIATWLREEVG 178

Query: 193 -EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA----GVPSHVALGVI 247
            E     Y   + R    V       + ++A+    V      +A     +P    L ++
Sbjct: 179 EESALWLYATLVDRDFQVVYFGNVRTVVVVALLALGVYNGLNVIAPPGLKIPIPNVLALL 238

Query: 248 TAIMAMIPGGAP-ISFTAVSIYL---LIKGNIFNATCLFLWGAIELFIVD----KTLRPF 299
           T    ++P     I +  V++YL    I+ +            + L ++D      +RP 
Sbjct: 239 TGAATLVPIVVGKIVYVPVTVYLGLAAIESDPATIWFPVAVAVVALLVLDLFPIMIVRPV 298

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
             G           F  + G       G+F GP+L+     + +  +  +
Sbjct: 299 FAGQST--HRGAMMFSYIFGGLLFSWYGVFFGPLLLIAAIHLVRVGLSEL 346


>gi|148272573|ref|YP_001222134.1| AI-E2 family membrane protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830503|emb|CAN01438.1| conserved membrane protein, AI-E2 family [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 352

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/292 (13%), Positives = 104/292 (35%), Gaps = 8/292 (2%)

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V+++ +F+V L  L    +  +  +V++        +   + +S             + +
Sbjct: 63  VAILVIFLVLLGSLAGVLLAVIPVVVNQASALVTQIVQYAQSVSGDQFIENLQSFVPREV 122

Query: 128 SHPQSLKILSETFLKTNG-IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
              Q+       +L     +  I            ++   ++ ++I   +F     S   
Sbjct: 123 FDVQTGADQLVQYLSNASNVATITGNVITVAFTIGNFLFGLVIVVILTMYFTASLNSFKS 182

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L  L      A +  I+  + + +    +G   +A+  G++      + G         
Sbjct: 183 GLYKLVPATRRARFADIAEQITQSVGRYVMGQVGLALCNGVLSFVYLSIVGAALPAVWAF 242

Query: 247 ITAIMAMIPG-----GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           I  + +++P      G+ +      + L    N +    + ++  + + I    L P ++
Sbjct: 243 IAFLFSLLPLVGTITGSALIVLGQIVLLPESMNTW--IAVAIYYLVYMQIEAYVLSPNIM 300

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              +K+P +      + G   +G+LG  I   + A + +I ++  + ++  +
Sbjct: 301 NRAVKVPGVVVVIAALTGGTLLGVLGALIAVPVAAAVLLIIRQVAVPLQNER 352


>gi|307944293|ref|ZP_07659634.1| putative membrane protein [Roseibium sp. TrichSKD4]
 gi|307772639|gb|EFO31859.1| putative membrane protein [Roseibium sp. TrichSKD4]
          Length = 355

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 44/335 (13%), Positives = 107/335 (31%), Gaps = 24/335 (7%)

Query: 14  WMIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFIS--KKEESSTFLAVIATV 68
            + + ++ ++ + L   +    P + AL++ +    + +S      +         ++  
Sbjct: 9   TLSLILVCLTGWLLVAGRSLLLPFVIALMLWYLINALSASLARAPSRSGKPVLPGWLSLG 68

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +  V    +F      + +L      A  +   +   ++ I      S+    +  
Sbjct: 69  LSLVVIFVAATVVFDMVAANLADL---ARDAPTYQARLNDLVTQITATFKLSDPIDFNDL 125

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
            P+         + T G  F+ + AS             +  I  LF          +  
Sbjct: 126 LPEGGVQR----MVTAGAGFVTQIASSAS----------LVFIYTLFLLLEQSTFDIKFA 171

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        ++   + + IR  F   T ++I  G++      + G+P     G I 
Sbjct: 172 RLFSNPAKAEAAFRVRAEINESIRHYFGIKTAVSIATGVLTSVILTMMGLPYAALFGFIA 231

Query: 249 AIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            ++  IP    +        + L+   ++     +        F +   + P L+G  + 
Sbjct: 232 FLLNYIPTIGSMIGVIFPSMLALVYYDSLTPFFVITFGLGFIQFAIGNLIEPKLMGSSLN 291

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           L  +     L       G++G+ +   L  +I +I
Sbjct: 292 LSGIIIMLSLALWGAIWGVVGMVLCVPLTVIIMII 326


>gi|116626053|ref|YP_828209.1| hypothetical protein Acid_7011 [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229215|gb|ABJ87924.1| protein of unknown function UPF0118 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 393

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 48/353 (13%), Positives = 111/353 (31%), Gaps = 25/353 (7%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +   +I+  LYF + FF   L AL I F   P  +  +  +   S    V+ +V++  L
Sbjct: 25  ILAAGVIIAVLYFGRLFFITSLIALTIAFILEPFVALLMRIRFPRSLASFVVCSVALALL 84

Query: 74  FIVPLLF--LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
           +++ L           E+ +   ++     +       + D    +             +
Sbjct: 85  YVIALGAYSQLSGLYDELPKYGQRIADLVDNVQQKISGMEDQTYKILVPARQRLEEERRR 144

Query: 132 SLKILSETFLKTNGIDFIPRFASRFG----------------------MIFLDYCLSIIF 169
             +  +    K+                                           L   F
Sbjct: 145 QQEQFASASKKSGKKGAAAAVPPPVPGAIPEVRIHEESTPISDYLLRLSGLYHVLLMASF 204

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
           +   ++F       +++               +  + +  ++R+  +G  ++ +   ++ 
Sbjct: 205 IPFLVYFMLSWRDHLNRSFLQFFHGEDRLIAARSMQGIADMVRAFVVGNFVLGLMLAMIS 264

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
              +W+  VP    +G ++  M+++P  G P++        L    +     + +  A+ 
Sbjct: 265 SVLFWILHVPYPALVGPLSGFMSLVPYIGLPLAMIPPLFAALPVNTVSTYVLVVVTVALL 324

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             I    L P +VG  + L  L   F L+         GL +   L A +  +
Sbjct: 325 HLIALNVLYPKIVGSRVHLNPLIVTFSLMIWGFLWDAPGLLLAIPLTAGLKAV 377


>gi|220930704|ref|YP_002507613.1| hypothetical protein Ccel_3344 [Clostridium cellulolyticum H10]
 gi|220001032|gb|ACL77633.1| protein of unknown function UPF0118 [Clostridium cellulolyticum
           H10]
          Length = 343

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 51/331 (15%), Positives = 112/331 (33%), Gaps = 27/331 (8%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE--ESST 60
           +++ + +   R +I+    + +Y L+G     L   I  +  +   S    + +   S  
Sbjct: 5   KSIFSKKITRRILILAAFALLIYLLRGMANMFLLTFIFAYLGYTAQSYVFRRTKIINSRV 64

Query: 61  FLAVIAT--VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
             A+I T  +  + L ++ L       + E K L+++                      +
Sbjct: 65  LKAIIITFYLVAVTLAVLLLYRYIPVIISEFKTLINQATTFYNMT--------------Y 110

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            +E     +S  + +KI S      +  + + +  S  G +  D+ ++I+    +LFF  
Sbjct: 111 ENETLNYFISLSKEIKISS---YIQDNFEVLYKSISNIGKLGFDFVMAIVL---SLFFIL 164

Query: 179 RDGF--SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
                   +    +    +         R   +           I+    ++     ++ 
Sbjct: 165 EKNRIVRFTSGFKNSKRSIVYDELSFFGRKFVQSFGKVIQTQITISFINAILSMIMLYIL 224

Query: 237 GVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
             P    LG +  I+ ++P  G  IS   +++     G       + +   I   +    
Sbjct: 225 KFPQIFGLGFMIFILGLVPVAGVVISLVPLAMIAFRIGGPTMIVYVLVLVTILHALESYI 284

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           L P L+    KLP   TF  L+     +G+ 
Sbjct: 285 LNPKLMSHKTKLPVFYTFVVLIVSEHILGIW 315


>gi|126656376|ref|ZP_01727637.1| hypothetical protein CY0110_21772 [Cyanothece sp. CCY0110]
 gi|126622062|gb|EAZ92769.1| hypothetical protein CY0110_21772 [Cyanothece sp. CCY0110]
          Length = 346

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 42/331 (12%), Positives = 106/331 (32%), Gaps = 11/331 (3%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + I +  L+ ++       +A+ +      +    +    +       +A   +  +F V
Sbjct: 12  LLIAIYILWQIRFIILLTFAAVALATAINYLVQLLMKLGIKKRGVAIFVALFLLALIFAV 71

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L  +F   + ++++ +  + L          WL +        E     +   ++L   
Sbjct: 72  FLWLIFPPFIDQVQQSLYLLPLVVDKIGVWLMWLQE-----TVPEQLVGEIQKLENLTRD 126

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                     +F   F+   G       L+I+ + + +           +   +     +
Sbjct: 127 LPGIATQLVGNFYSIFSGSLG-----VLLNILLVTVVMIMLLASPRPYIRLFLAFFPSFY 181

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                KI +     +     G+    +   L+      +  V   +A  ++  ++  IP 
Sbjct: 182 RRRAAKILKKSEIALVGWTKGILFNMLVITLLSWLGLTILQVKLSLANALLAGLLTFIPN 241

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             P       I L +    + A  + +   +        L P ++   + L    T    
Sbjct: 242 LGPALSCIPPIVLALIDAPWKALAVLILYILIQQAESNILTPLVMKQQVSLLPAVTLLAQ 301

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
                  G +GLF+  + +A++A +W E ++
Sbjct: 302 ASFAIFFGFIGLFLA-LPLAVVAQVWIEEVL 331


>gi|256843777|ref|ZP_05549264.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
 gi|256613682|gb|EEU18884.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
          Length = 344

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 53/343 (15%), Positives = 115/343 (33%), Gaps = 27/343 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            N   + R++++ +I+  LY ++     VL   I  +    +         +  T L V 
Sbjct: 9   KNNIPLRRFVVLLLIIACLYEIRAMMNTVLLTFIFTYVIVHLIHLVQRYFPKIPTGLIVA 68

Query: 66  ATVSVMCLFIVPLLFL-FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            T  ++   +  ++ +     + ++ ++V  V+   +                  +   T
Sbjct: 69  VTYLIILALLYFVVTIYLPMLVGQISKMVKSVMAFYESN-----------ESSRLASHVT 117

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +++S  + +               +  FA      F    ++    +I  FF+  +   +
Sbjct: 118 RYISKGEIVTQ----------AKRVGTFALHTVTNFGSLTIATFMSLILSFFYTIELDRM 167

Query: 185 SQQ----LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
            +     + S          +   +               IAI    +   +     +P 
Sbjct: 168 IEFSKLFVKSGYFKWLFEDIRYFGKKFTNTFGVVLEAQFFIAICNTALTMISLAFMHMPQ 227

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +ALG++  I++++P  G  IS   +SI     G I     +F+   I   I    L P 
Sbjct: 228 IIALGLMVFILSLVPVAGVIISLIPLSIIGYSVGGIRYVIYIFIMIMIIHAIEAYVLNPK 287

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            +    +LP   TF  L+      G  GL +G  +   +  + 
Sbjct: 288 FMASKTELPIFYTFLVLLVAEHFWGTWGLIVGVPIFTFLLDVL 330


>gi|16766868|ref|NP_462483.1| permease [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|62182081|ref|YP_218498.1| PerM family permease [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161616631|ref|YP_001590596.1| hypothetical protein SPAB_04448 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167990799|ref|ZP_02571898.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168465136|ref|ZP_02699028.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|194444171|ref|YP_002042827.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|16422143|gb|AAL22442.1| putative PerM family permease [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|62129714|gb|AAX67417.1| putative PerM family permease [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161365995|gb|ABX69763.1| hypothetical protein SPAB_04448 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402834|gb|ACF63056.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|195632227|gb|EDX50711.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|205330660|gb|EDZ17424.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|261248735|emb|CBG26574.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995813|gb|ACY90698.1| putative permease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301160121|emb|CBW19641.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312914605|dbj|BAJ38579.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321226631|gb|EFX51681.1| Putative PerM family permease [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322716569|gb|EFZ08140.1| UPF0118 inner membrane protein yhhT [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 349

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 47/321 (14%), Positives = 115/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + IIL  ++        +L AL       P+ + FI +  +       +A   V
Sbjct: 14  LLKLASLVIILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVKRP-----LAITIV 68

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L       + E ++ +   ++               +    L  + L   
Sbjct: 69  VVVMLIVLTALVGVLAASLNEFIAMLPKYSKE--------------LTRKVLHLQELMPF 114

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    D I  F +           SI+ +++ + F   +   +  +L  
Sbjct: 115 LNLHMSPERMLRGMDSDKIMLFTTTLMTGVSGAMASIVLLVMTVVFMLFEVRHVPYKL-R 173

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G ++     L G+   +  GV+  +
Sbjct: 174 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGAIIWLGLALMGIQFALMWGVLAFL 232

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  G+ IS     I  L+    +    +     +   ++   + P ++G  + +  
Sbjct: 233 LNYVPNIGSVISAVPPMIQALLFNGFYECVLVGALFLVVHMVIGNIMEPRMMGHRLGMST 292

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           L  F  L+     +G +G+ +
Sbjct: 293 LVVFLSLLVWGWLLGPVGMLL 313


>gi|50954914|ref|YP_062202.1| membrane protein [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951396|gb|AAT89097.1| membrane protein [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 276

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 102/285 (35%), Gaps = 10/285 (3%)

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + V+  F+  +  +    + +  +LV   V           W+S+     W   L  +  
Sbjct: 1   MIVIGAFVGLIWAIVPVAVGQATQLVQNTVS----------WVSNGDAEKWFLTLQHQFP 50

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +      I + T      +  I     + G+  +     ++ +II   +F     SI + 
Sbjct: 51  TIVNQQNIDAVTQWLQQNLPDITSKVLQTGIGIVQGAFGVVIVIILTIYFTASLPSIKRA 110

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L      + +  I   +   +    +G  ++A+  G++      + G    + L  I
Sbjct: 111 GYQLVPASRRSRFADIGDQITDSVGKYVMGQVVLALVNGVLSTIFLSVIGAKFPILLASI 170

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
               ++IP    I+ + + +++ +      A    ++  + + +    L P ++   + +
Sbjct: 171 AFFFSLIPLVGTITGSVIIVFVCLFSGPPTAIAAAVYYIVYMQVEAYVLSPRIMNRAVSV 230

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           P        + G   +G+LG  +     A I +I K+ ++  +  
Sbjct: 231 PGAVVVVAALAGGTLLGILGALVAIPFAAAILLIIKQVLVPRQNE 275


>gi|302332622|gb|ADL22815.1| putative permease [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 361

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 45/330 (13%), Positives = 105/330 (31%), Gaps = 13/330 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P L +  + +   P  +             A I T+ +    I+ L+  F   ++   
Sbjct: 41  FLPFLISGFLFYICLPFQNLLEKVGFPR---WASITTIMLALFAIIGLIVAFVAPIIISN 97

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
                                 +       E  T  +++         T + +N + +I 
Sbjct: 98  INNLISQTPALQKEAEQIIKFALAQMDKLPEDVTSRITNMVKSMGDGVTNILSNSLQYIT 157

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              S            +I +   L +  +D       +    +     ++  +   +   
Sbjct: 158 SLISTI--------FLLIMVPFFLIYMLKDHEKFIPAVAKFFKGGRKVFFVDLLTDLNFT 209

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYL 269
           ++S   G   +++  G+ L   Y +  +P    L +   +  +IP  G+ +SF   +I L
Sbjct: 210 LKSYIQGQVTVSVILGIFLYIGYSIIDLPYIPLLVLFAGVANLIPFLGSWLSFAPAAI-L 268

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            I  +      + +   I   +    + P ++G  + +  L     ++      G   + 
Sbjct: 269 GIIDSPTTFIWVCIITLIAHQLEGNIITPNVMGKSLSIHPLTIIVVILAAGDLGGFTLVL 328

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISSN 359
           I   L A++  +        +   +K +SN
Sbjct: 329 IAVPLYAVLKTVVSNIFKYRQRIIDKANSN 358


>gi|238783747|ref|ZP_04627766.1| AI-2 transport protein tqsA [Yersinia bercovieri ATCC 43970]
 gi|238715298|gb|EEQ07291.1| AI-2 transport protein tqsA [Yersinia bercovieri ATCC 43970]
          Length = 332

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 47/315 (14%), Positives = 108/315 (34%), Gaps = 22/315 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +I+  +        P L A+ +     P+    + K     T   V+    ++ L  +
Sbjct: 5   LVVIMAGIKAASPIVVPFLLAIFLAIVLNPL-VKLLEKIRIPRTLAIVLLVTLIILLMAL 63

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
               L                  N+    +P++   +   M   + +    +   S+  +
Sbjct: 64  LFSRLGSSL--------------NEFARSLPQYRGMMLEKMRELQEFAMRFNIEFSVDDI 109

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +    +  ++F+ R  S          L ++ ++  LF   R  + +    D+      
Sbjct: 110 MKHVDPSTAVNFVTRLLSHLSGAMASTFLLLMTVVFMLFEVERLPYKMQLMFDN------ 163

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
           P     I +     +    +  T+I+I  G+V+       GV      G++  ++  IP 
Sbjct: 164 PEQGNAILKRALNGVTHYLVIKTVISIATGIVIWLFLAAMGVRFAFLWGLLAFVLNYIPN 223

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ ++     I  L+     +A  +     +   I    + P ++G  + L  L  F  
Sbjct: 224 IGSVLAAIPPIIQALLFNGFADAFAVTGGYILINLIGGNIIDPRMMGRGLGLSTLVVFLS 283

Query: 316 LVGGVRTMGLLGLFI 330
           L+     +G +G+ +
Sbjct: 284 LIFWGWLLGPIGMLL 298


>gi|150015987|ref|YP_001308241.1| hypothetical protein Cbei_1103 [Clostridium beijerinckii NCIMB
           8052]
 gi|149902452|gb|ABR33285.1| protein of unknown function UPF0118 [Clostridium beijerinckii NCIMB
           8052]
          Length = 342

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 75/187 (40%)

Query: 158 MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG 217
           M   D  +S+  + I +++F  DG  I  ++  L         KKI   + +V+      
Sbjct: 150 MSIGDNAMSLAIIPIMVYYFLCDGNKIYSKMLLLLPTSKRGLTKKILSDIDRVLTRYITS 209

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFN 277
             +++   G +      L  V   + + ++ AI+ +IP   PI     ++ + +  +   
Sbjct: 210 QLMLSGLIGGLTLILLLLLKVKFPLWISILNAILNIIPYFGPIFGAVPAVIVALLDSPIK 269

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           A  + +   I   +    L P + G   ++        L+ G +  G +G+ +   +  +
Sbjct: 270 AFWVIVGMFIIQQLEGDILSPKITGDSTEMHPFVIIILLLIGDKFGGFVGMVLVVPIAVI 329

Query: 338 IAVIWKE 344
           I V++ +
Sbjct: 330 IKVLYDD 336


>gi|167572528|ref|ZP_02365402.1| hypothetical protein BoklC_22011 [Burkholderia oklahomensis C6786]
          Length = 124

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 2/90 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISK--KEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A ++    WP      +       +T +A   T +V  L +VP+    
Sbjct: 35  WVIRDFIPAIAWACVVAIALWPALRRIDAHPGFHGRATLVAAALTTAVALLVVVPIAAGL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSD 112
              + +  EL+  +  A Q GIP P  L+ 
Sbjct: 95  VEAVDQSHELLGWLHRAEQTGIPAPDALAH 124


>gi|296186336|ref|ZP_06854740.1| membrane protein, putative [Clostridium carboxidivorans P7]
 gi|296049137|gb|EFG88567.1| membrane protein, putative [Clostridium carboxidivorans P7]
          Length = 338

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 74/192 (38%), Gaps = 5/192 (2%)

Query: 155 RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS- 213
           +       +  ++   I+   FF  +   I   L+          +K  S      + S 
Sbjct: 141 QLAANIGKWSANVFLAIMLSLFFMLEKNKIITFLEKFKTSKVSVMFKYFSFFGNNFLNSF 200

Query: 214 --TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLL 270
                   +IA    ++      +   P  ++LG +  I++++P  G  IS   +S+   
Sbjct: 201 GKVIQAQIVIAFANTIISVIMLSILKFPQLISLGFMIFILSLVPVAGVIISLIPLSLIAF 260

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             G       + +  A+   +    L P L+   I+LP   TF  L+     MG+ GL I
Sbjct: 261 KIGGFTKVLYVLIMVAVVHSLESYVLNPKLMSAKIELPIFFTFIILIASEHFMGVWGLLI 320

Query: 331 G-PVLMALIAVI 341
           G P++M ++ ++
Sbjct: 321 GIPLVMFILDLL 332


>gi|218506533|ref|ZP_03504411.1| putative permease protein [Rhizobium etli Brasil 5]
          Length = 81

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/53 (77%), Positives = 44/53 (83%)

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            LVGGPIKLPFLPTFFGLVGGV+TMG LGLFIGPVLMALI  IW+E I   + 
Sbjct: 1   KLVGGPIKLPFLPTFFGLVGGVKTMGFLGLFIGPVLMALIVAIWREWIHEARN 53


>gi|21228957|ref|NP_634879.1| ABC transporter, permease protein [Methanosarcina mazei Go1]
 gi|20907495|gb|AAM32551.1| ABC transporter, permease protein [Methanosarcina mazei Go1]
          Length = 280

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 76/209 (36%)

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           L+  G             +   +   ++ + +    +++    I   + +          
Sbjct: 65  LQKIGNTIFSGITDLVSKVSYYFLTGVLVIPLMFGMYFKHHNKIGDYIHAYAPPEHADGI 124

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
            +    + + +   F    + +   GL+    ++L G+   + LG++   + +IP   PI
Sbjct: 125 LRALESIGRELEDFFSAKMLESAIIGLICCIGFYLGGLDGWLFLGILAGFLNIIPYIGPI 184

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
                 + +    ++  A    +   I   I +  L PF++   + +  L +    +   
Sbjct: 185 LGAIPPVIIGYIDSLMTALFAVITVVIAQTIDNLYLIPFMISEKVNINPLLSVILTLAAS 244

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           + +G LG+ +   +  +  +I KES + +
Sbjct: 245 KLLGPLGMVLAIPIYIIYKIIVKESYVEL 273


>gi|85709353|ref|ZP_01040418.1| hypothetical protein NAP1_10748 [Erythrobacter sp. NAP1]
 gi|85688063|gb|EAQ28067.1| hypothetical protein NAP1_10748 [Erythrobacter sp. NAP1]
          Length = 387

 Score = 59.1 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 43/317 (13%), Positives = 104/317 (32%), Gaps = 17/317 (5%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P+++AL++     P+    +         LA ++++ +    +V  L L       + 
Sbjct: 55  FLPIVAALVLTILLSPLADWMVRS--GIPNALASLSSLLMFFGVLVAALALILQPAAALF 112

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           E + +++          +  ++        E  +  +    + +++             P
Sbjct: 113 ERMPEIIARVSERFAELQ--AEFAWVSGIDEQMSGAMGEGDTREVVIAA----------P 160

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFY-RDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                         + ++ M +  FF     G      L             +  R V  
Sbjct: 161 SMLEEIAFATPSVVVQVLVMFLMAFFMIEARGRMRRSLLFDRASFGSSVRAARAIREVQD 220

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA--VSI 267
            + +  + +++I  G G+V+G A W  G+ + +  G +  I+  IP   P++  A     
Sbjct: 221 RVAAYIITVSMINAGLGIVVGLAAWAWGLDAPIMWGGLAMILNFIPYIGPLALMALLAVF 280

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            L     I+      L   +   I    + P ++G    +  +     L       G +G
Sbjct: 281 GLGTADTIWLGLVPALSYMVLNAIEGNAVTPSILGARFTMSPVMILIALSYFTWIWGAIG 340

Query: 328 LFIGPVLMALIAVIWKE 344
             +   ++  +  ++  
Sbjct: 341 ALLSVPILLTLTGLFDH 357


>gi|225867420|ref|YP_002752798.1| hypothetical protein BCA_5589 [Bacillus cereus 03BB102]
 gi|225788925|gb|ACO29142.1| putative membrane protein [Bacillus cereus 03BB102]
          Length = 347

 Score = 59.1 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 56/153 (36%), Gaps = 1/153 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAP 259
           +   +   +          +IA+   ++   A  + G P  + L ++  ++ +IP  G  
Sbjct: 188 EYFGKKFARSFGKVIEAQFLIAVVNCILSVIALSILGFPQLLGLALMIFLLGLIPVAGVI 247

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS   + +     G I     + +   +   +    L P  +     LP   TF  L+  
Sbjct: 248 ISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFS 307

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              +G+ GL IG  +   +  +   +   +++ 
Sbjct: 308 EHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKE 340


>gi|299534640|ref|ZP_07047972.1| hypothetical protein BFZC1_01387 [Lysinibacillus fusiformis ZC1]
 gi|298730013|gb|EFI70556.1| hypothetical protein BFZC1_01387 [Lysinibacillus fusiformis ZC1]
          Length = 245

 Score = 59.1 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 84/192 (43%), Gaps = 2/192 (1%)

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
              I    I L+    +  +I+++L +     +      I + V   +        ++ I
Sbjct: 55  LFDIFVYWIVLYMLLLELPTINRKLLTPVPFHYHQKIIFIGQRVKLALFGFLKAQLLVGI 114

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG-APISFTAVSIYLLIKGNIFNATCLF 282
           G   +  +A++    P  + L ++  ++  IP   + I     +IY +  G+   A  L 
Sbjct: 115 GIFAISFAAFYFLKTPFPILLALLLVVLDFIPFLDSFILLVPWAIYQVFAGDYLYAAVLI 174

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L   I  F+V + + P ++G  I L  L TF  +  G +  G +G+ IGP+L+ ++  ++
Sbjct: 175 LL-TIGQFLVRRMIEPKIIGDKIGLSSLNTFIAMFIGFKIFGFIGILIGPLLVVVVLSLF 233

Query: 343 KESIMAIKENKE 354
           + +I  +   ++
Sbjct: 234 QPTIKNLPPAQK 245


>gi|262203246|ref|YP_003274454.1| hypothetical protein Gbro_3357 [Gordonia bronchialis DSM 43247]
 gi|262086593|gb|ACY22561.1| protein of unknown function UPF0118 [Gordonia bronchialis DSM
           43247]
          Length = 358

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/313 (14%), Positives = 99/313 (31%), Gaps = 21/313 (6%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P+  AL++     PI S    K     T+ + + T++++   ++ L     + +  + 
Sbjct: 14  VGPLFLALMLTVAVAPIPSWLRRKGW--PTWASFLVTLALVYGILIGLFASLVFSVARLA 71

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            ++                             +   L+     +      L       + 
Sbjct: 72  TILPTYSAKFND----------------LVGDFKSFLTSHGVSEDKVHAILSNVDSSKVI 115

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              +      L    ++I ++  L F   D      ++++L                 + 
Sbjct: 116 SVVTDLLSSTLSITSALILILALLLFMAADAVGYDDRMETL--RRTRPDIAAAFSSFSRG 173

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
            RS     T+  +   ++   A  L  VP  V  G+++ I   IP  G  I     ++  
Sbjct: 174 TRSYLWVSTVFGLIVAVLDTGALALMSVPLPVLWGLLSFITNYIPNIGFVIGVIPPALLA 233

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           L+ G       + +  ++   I+   ++P  VG  + L    TF  L      +G LG  
Sbjct: 234 LLDGGPDKMLLVIIVYSVINVIIQSVIQPKFVGDAVGLSTTLTFVSLRFWSWVIGPLGAI 293

Query: 330 IGPVLMALIAVIW 342
           +   L  +   + 
Sbjct: 294 LAVPLTMMAKALL 306


>gi|159903260|ref|YP_001550604.1| permease [Prochlorococcus marinus str. MIT 9211]
 gi|159888436|gb|ABX08650.1| Predicted permease [Prochlorococcus marinus str. MIT 9211]
          Length = 359

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/338 (14%), Positives = 118/338 (34%), Gaps = 8/338 (2%)

Query: 14  WMIMFIILVS---LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           W+ +  ++ S   L+ L+     + + +++      +        +       ++   S 
Sbjct: 6   WLTLAALITSTLLLWNLRSVLIIIFAGIVLSIALCTLIGKVQLTLQLPRAISFLLVVTSG 65

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLAN----QHGIPVPRWLSDIPGGMWASELWTKH 126
           + +F + ++ +      E ++L+ ++  A     Q  +     +S+   G  A ++    
Sbjct: 66  LLIFALSMVIVIPQFTEEFQQLIIQLPSAAKELWQISVDSIGKVSEFVYGENAKDILKDS 125

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                   +     L     D + R  +  G + L   +  IF+I           +  +
Sbjct: 126 FLSKDFTALPDGASLANGITDSLKRILNLAGNLGLG-IVQFIFVISISLMIAIQPEAYKE 184

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
               L    +    + I       + +  L + I +    ++ G + ++ GV   VA  +
Sbjct: 185 VFILLIPSFYRRRARTILVKCGNSLSNWMLAVIISSSFVAILAGVSLYILGVKLVVANAL 244

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +  I+ +IP   P   T   + + +  N + +  +     I   +    + P ++   +K
Sbjct: 245 LAGILNIIPNIGPTLSTIFPMSVALLDNPWKSLAVLGIYIIIQNLESYVITPSVMQHQVK 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L    T           G +GL +   L  +I ++ KE
Sbjct: 305 LLPGFTLTAQFIFTIIFGPIGLLLSLPLAVIIQILVKE 342


>gi|323204641|gb|EFZ89639.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
          Length = 279

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 95/273 (34%), Gaps = 13/273 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESST 60
           R    +P+ I   +I+      L+F  G  AP+L A+++ +   WP  +   +       
Sbjct: 10  RRRFSDPEAIALLVILVAGFSILFFFSGLLAPLLVAIVLAYLLEWP-TARLQAIGCSRRW 68

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             +++  + V  L ++  + +       +  +     + N+            P  M A 
Sbjct: 69  AASIVLILFVGILLLMAFVVMPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +     +    +  + ++ +K +    +           L   + ++ + + +FF  +D
Sbjct: 129 IIDAMAENMRTRMLNMGDSVVKYSLASLV---------GLLTLAVYLVLVPLMVFFLVKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +          ++   + + I +   G  +  +  G+     + L G+  
Sbjct: 180 KEQMLNAVRRVLPRNRGLAG-QVWNEMNQQITNYIRGKVLEMVVVGVATWLGFLLFGLNY 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIK 272
            + L V+     +IP  GA +    V    L +
Sbjct: 239 SLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQ 271


>gi|78213929|ref|YP_382708.1| hypothetical protein Syncc9605_2421 [Synechococcus sp. CC9605]
 gi|78198388|gb|ABB36153.1| conserved hypothetical protein [Synechococcus sp. CC9605]
          Length = 361

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 95/297 (31%), Gaps = 15/297 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
              F    L+A +I F           +    +   A+++ V V    +          +
Sbjct: 31  FAPFPGLFLTAALIAFLLDLPCRWLAQRGLPRAW--AIVSVVLVTLGLLGWAAVALVPLL 88

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
           +E  +L   +  +        +W+         ++LW      P     LS   +     
Sbjct: 89  IE--QLSQLLSASPSLLTAAEQWIDR-------AQLWALDHGLPADFADLSSDLVAQ--F 137

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +    S+  +  L   +     ++ +          +  +        P  W+ + + 
Sbjct: 138 SRLATQLSQRLLGLLGATVGTTINVVIVLVLAVFLLLGADPIVDGLARWLPDRWRDLVQT 197

Query: 207 -VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + +  R  F G  ++A+         +    +P  V   V+     ++P  + +S  +V
Sbjct: 198 TLERTFRGYFAGQVVLALILSGGQLLVFTALKIPYGVLFAVLIGFTTLVPYASAVSIVSV 257

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
           S  L ++ +      L     +   IVD+ ++P L+G  + L        L  G R 
Sbjct: 258 SAVLAVQ-DPRTGLELLAAAIVVGQIVDQVIQPRLMGSIVGLQPAWLLIALPIGARV 313


>gi|288574771|ref|ZP_06393128.1| protein of unknown function UPF0118 [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570512|gb|EFC92069.1| protein of unknown function UPF0118 [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 344

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 74/201 (36%), Gaps = 3/201 (1%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           N  + I ++        + +  +++ +I+ L F       +  ++         +    +
Sbjct: 119 NWGERIGKYLLSLSGSLVTFMSNLVLVIVFLVFMLLGSPYVEYKIKKAFSVDSGSRILSV 178

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
            + +   I S     T+I++  G+ +  A     V   +  GV+   +  IP    I  +
Sbjct: 179 LKAISTQIGSYLTLQTLISVSTGVCVWLALSYLRVDFAMTWGVLAFALNFIPTIGSIIAS 238

Query: 264 AVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
              I L +     N F A    +   +   ++   + P ++G  + +  +     L    
Sbjct: 239 VPPILLALVQYYPNTFPAIGAAVSLLLIQMLIGNVITPKVMGDSLDVSPVVILISLFFWG 298

Query: 321 RTMGLLGLFIGPVLMALIAVI 341
              G++G  +   ++A+I +I
Sbjct: 299 WLWGVIGALLSVPIVAIIKII 319


>gi|170739126|ref|YP_001767781.1| hypothetical protein M446_0793 [Methylobacterium sp. 4-46]
 gi|168193400|gb|ACA15347.1| protein of unknown function UPF0118 [Methylobacterium sp. 4-46]
          Length = 348

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/336 (13%), Positives = 111/336 (33%), Gaps = 23/336 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M E+      +     + +   +L+  +  FAP   AL +    WP+ S       ++  
Sbjct: 1   MSESAKPSVAVPAICALILAGAALHLARTVFAPAAFALFVIAVVWPLQSRLERVVPKALA 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A +    ++           +     ++ +V+         + +  WL     G+  +
Sbjct: 61  LSASVLATLIVVTAFG--SLTAWAFGRTVRYVVNDAPHLQAVYLQLSDWLET--HGVVLA 116

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L+ +H                   + ++ R          +    +  ++I +     +
Sbjct: 117 GLFAEHFD-----------------VRWLIRLLPEVASRISNMTAFLFVILIYVILGLSE 159

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              ++++L +L +H                +R   +  T++++  GL++ +      +P 
Sbjct: 160 VDEVARKLHTLDDHGIGRALLAGGAETAAKLRRFVVVRTLMSLTTGLLVCAFAAAMALPL 219

Query: 241 HVALGVITAIMAMIPGG--APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            +  GVI   +  IP    A  +       L    +   A  + +   +  F +   + P
Sbjct: 220 ALEWGVIAFTLNYIPVIGSAAATVLPTVFALAQFVSWEIALVVLVGLNLIQFFIGNFVEP 279

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
            + G  + +  +   F +       G+ G FIG  +
Sbjct: 280 KVAGSSLSISPVIVVFAVFLWTFLWGIAGAFIGVPI 315


>gi|258655025|ref|YP_003204181.1| hypothetical protein Namu_4918 [Nakamurella multipartita DSM 44233]
 gi|258558250|gb|ACV81192.1| protein of unknown function UPF0118 [Nakamurella multipartita DSM
           44233]
          Length = 364

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/301 (16%), Positives = 101/301 (33%), Gaps = 21/301 (6%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             PV  AL++     PI  + + ++  +  ++A  A        IV L+     G++   
Sbjct: 28  IGPVFLALVLTILVDPIRGALVRRR--APQWVATGAAFLTALFIIVGLVVATVLGIVAFV 85

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L+ +                       A       L+     +   ++ L +     I 
Sbjct: 86  ALIPQYSAQ----------------WSQALAGLQSWLAGLGLSEADIQSALSSLDPSTIA 129

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
            FA             ++  ++ L F   D      ++  L             R +   
Sbjct: 130 GFAQSLLSGLSSALSVLLLAMVLLIFLAVDAAVFPARMAKL--RSGHEVALDGLRTIAAN 187

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
            R  F   ++      ++  +A +L G+P+    G++  +   IP  G  IS    +I  
Sbjct: 188 TRQYFWVASVFGGIVAVLDTAALYLLGIPAAFVWGLLAFVTNYIPNVGFIISLIPPAILG 247

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           L++G    A  + +      F++   L+P  VG  + L    +F  L+     +G LG  
Sbjct: 248 LLQGGPGLAIAVVVIYCGLNFVIQSVLQPKFVGDAVGLTTTVSFLSLIVWTYILGPLGAI 307

Query: 330 I 330
           +
Sbjct: 308 L 308


>gi|325846878|ref|ZP_08169735.1| putative ATP synthase F0, A subunit [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481120|gb|EGC84164.1| putative ATP synthase F0, A subunit [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 398

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/350 (14%), Positives = 120/350 (34%), Gaps = 11/350 (3%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           + V L  ++ F    + A II            SK  ++     +I   S++  +I+ +L
Sbjct: 35  LTVFLAVIQPFLIGFMLAFIINLPMNFFEKKVFSKVFKTEKTKKLIPVFSLITSWILFIL 94

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            +  +  + +  + S V                +      ++ +   +         +  
Sbjct: 95  GITIFLNVLIPRISSAVTTLIDRFPVFLNDFVKLLNKNKITKRFADDVQKYIYSVDWNHK 154

Query: 140 FLK---------TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ-LD 189
            ++          N  D      +      +    S+IF +  L    +D   ++ + + 
Sbjct: 155 LIQVRDYFMGEAGNIFDKTTTIINSVSSTLVTVATSLIFSVFVLISK-KDLKILANRVIY 213

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           S+ +        K++ +      S      + ++  GL++    ++  +P      ++ A
Sbjct: 214 SIFKKETADEINKVASLSYSTFASYINSKALSSLILGLLVLIGMFILKIPFAAMAAIMVA 273

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I   IP   P+  T + + L+   + F +    ++  I   +    + P L G  I LP 
Sbjct: 274 IADFIPYVGPLIATIIMMILIFIESPFQSLVFLIFLLIVQQVQGSIIYPALAGKTIGLPS 333

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +     +  G    G++G+ +   + +++  +  E +    E KE     
Sbjct: 334 IWIIVSIAIGGSLFGVVGMLVSIPIASILYTLMNEKMDKKLEKKEISKDQ 383


>gi|300865333|ref|ZP_07110144.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300336636|emb|CBN55294.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 368

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/312 (13%), Positives = 110/312 (35%), Gaps = 21/312 (6%)

Query: 8   PQGIMRWMIMFII----LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            Q ++ W+++ +     L +++++    + +++A +I F      +         +    
Sbjct: 9   QQFLITWLLVLVTGWFTLGAIHYVAELISILVTAGLIAFLLNYAVARLQVFLPRGAAAAL 68

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           V     ++   IV            +      +  A Q  +  P  L      +   ++W
Sbjct: 69  VYFAAGLVMAVIV------------LTIAPPVLNQAAQLAVRFPDLLESGRQQLAEFQIW 116

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFG--MIFLDYCLSIIFMIIALFFFYRDG 181
           +   + P  ++IL +              AS  G  +  +++ L +I +++  F+   DG
Sbjct: 117 SAERNLPFDVQILEQQLSAKVQEQVQAIAASGLGLVVGTVNWFLDLILILVISFYMLLDG 176

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + + L S+     P     ++  + + ++    G  ++ +   + L   +W+  VP  
Sbjct: 177 ERVWRGLTSI---FAPEIRYVLTETLERNLQRFVSGQLLLGLFMAIGLTLVFWVLQVPFF 233

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +   V   ++  IP             ++   + + A  + +       + D  + P ++
Sbjct: 234 LLFAVFIGLLEAIPFIGATLGIGAVSIIVAFIDWWLALEVLVAAIALQQVKDNLIAPRIM 293

Query: 302 GGPIKLPFLPTF 313
           G       +  F
Sbjct: 294 GSLTGFSPVVIF 305


>gi|325570153|ref|ZP_08146053.1| integral membrane protein [Enterococcus casseliflavus ATCC 12755]
 gi|325156812|gb|EGC68984.1| integral membrane protein [Enterococcus casseliflavus ATCC 12755]
          Length = 310

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/323 (13%), Positives = 103/323 (31%), Gaps = 24/323 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L    + RW ++F++   L+  +     +L   I  +  + +      K        +++
Sbjct: 8   LQNLVLRRWTVLFMLAGILFLFRSMMTILLLTFIFTYLIYRLVLLLHRKSHLPIKLTSIL 67

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
               ++ +  +         + +  +LV+ V    Q        +  +   +  SE   K
Sbjct: 68  TYSLIVFILYLVATNYVPIIIKQSVQLVNSVADFYQRTDSNNELIEYVLNLLQTSEYIQK 127

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                             +G+  +  +   FG + L   +S +      FFF  D     
Sbjct: 128 L----------------QSGVLVVINYLYNFGELALTVLISFLLS----FFFMIDNKKTV 167

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                  +     +++ +  +  K  R+         +IA+    +   A  + G P  +
Sbjct: 168 AFSRLFLQGRGAWFFEDVYYLGAKFTRAFGNVIETQLVIALVNTAITVFALAVMGFPQLL 227

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +L ++   +++IP    I     ++      G   +   + L       +    L P L+
Sbjct: 228 SLALMIFFLSLIPVAGVIISCIPLTFIAYSIGGFNDVIYILLIIVFVHALESYILNPRLM 287

Query: 302 GGPIKLPFLPTFFGLVGGVRTMG 324
               ++P   TF  L       G
Sbjct: 288 ANKTEIPMFYTFILLYLSEHLFG 310


>gi|304312910|ref|YP_003812508.1| Putative permease [gamma proteobacterium HdN1]
 gi|301798643|emb|CBL46875.1| Putative permease [gamma proteobacterium HdN1]
          Length = 360

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 57/356 (16%), Positives = 127/356 (35%), Gaps = 25/356 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA--- 63
           N + I+  +++      L  L G  APVL+A+++ +    I +   + +   +  LA   
Sbjct: 15  NDESIIIILLIAGFSAILATLGGILAPVLAAIVLAYLLQGIINQLAAWRVPKTLALAGVY 74

Query: 64  --VIATVSVMCLFIVPLLF--LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
              + +++     +VPL +  L     +++  LV++     +    +P    +I    W 
Sbjct: 75  ALFLGSLASFLFVLVPLTWGQLVRLVSVQLPLLVTEGARVLRM---LPLEYPEIVSEQWI 131

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           S++ T   +   +L     +F  ++                +D  + I+ + + +FFF +
Sbjct: 132 SDVSTVLTTRMNTLVDSVVSFSVSSLP------------SVMDTMIFIVLLPLLVFFFLK 179

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D   +            P +  ++   +   I +   G  I  +  G +   A+ L G+ 
Sbjct: 180 DKDRLIAWFVGFLPQERP-FMNRVMSEMNIQIANYVRGKAIEILITGSITYVAFLLLGLQ 238

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC--LFLWGAIELFIVDKTLR 297
               L  +  +  +IP    +  T   + +      + A    + +   I   +    L 
Sbjct: 239 YAALLAFMVGLSVVIPYIGVVLVTVPVVVVAYFQFGWGADFFAVMVVHLIIQTLDGNLLV 298

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           P L    + L  +     ++      G+ GLF    L  L+  I+         + 
Sbjct: 299 PLLFSEAVNLHPIAIMVAVLVFGGVWGIWGLFFAIPLATLVNAIFSSWPREEPPSN 354


>gi|169826981|ref|YP_001697139.1| hypothetical protein Bsph_1403 [Lysinibacillus sphaericus C3-41]
 gi|168991469|gb|ACA39009.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 245

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 70/170 (41%), Gaps = 2/170 (1%)

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
              I    I L+    +  +I+Q++       +      I + V   +        ++ +
Sbjct: 55  LFDIFVYWIVLYMLLLELPTINQKILMPIPFHYHQKIVFIGQRVKLALFGFLKAQLLVGL 114

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG-APISFTAVSIYLLIKGNIFNATCLF 282
           G   +  +A++    P  + L ++  ++  IP   + I     +IY +  G+   A  L 
Sbjct: 115 GIFALAIAAFYFLKTPFPLLLALLLVVLDFIPFLDSFILLVPWAIYQVFAGDYLYAVVLI 174

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
           +   +  F+V + + P ++G  I L  L TF  +  G +  G LG+ IGP
Sbjct: 175 VL-TVGQFLVRRMIEPKIIGDKIGLSSLSTFIAMFIGFKIFGFLGILIGP 223


>gi|291166109|gb|EFE28155.1| hypothetical protein HMPREF0389_00068 [Filifactor alocis ATCC
           35896]
          Length = 400

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/348 (12%), Positives = 111/348 (31%), Gaps = 29/348 (8%)

Query: 7   NPQGIMRWMIMFIILVSLYFLK--GF-----------FAPVLSALIIGFTSWP----IYS 49
             + +++ +++   ++  +F+K   F             P +  ++I +  +     I  
Sbjct: 11  KKELVLKGILISFAILFYFFIKNIPFALEKIRLFLNTMNPFIYGMVIAYLMFRPVCFIER 70

Query: 50  SFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN--------Q 101
                 + +  +  +   +S+  +F++   FL + G + + +LV  + +          Q
Sbjct: 71  QLFRLFKRNEKYRQLCRNLSIFFVFLMTFGFLIFIGNVFIPQLVESLTVLTEKIPEYIKQ 130

Query: 102 HGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL 161
                   + +             ++S  +     +          F+          F 
Sbjct: 131 FETFWKNVVQNQKILHQLKSFGFTNISQYKVDFWENLNQKTIKFFQFLIPSVISISGSFT 190

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA----YWKKISRIVPKVIRSTFLG 217
              ++I+  II   +          Q   +   +FP        +I  +  +  ++   G
Sbjct: 191 GKIVNILMGIIVSIYLLSGKEVFEAQSKKVLYGIFPNKVVNNILQIIALTNETFQNYIGG 250

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFN 277
               A+  G++      +  +P    +  +  +  +IP    I    + I+L++  +   
Sbjct: 251 QITDAVVLGIITFICMLILRLPMAFMISFLVMVCNVIPMIGSILSGIIGIFLILVISPSQ 310

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           A    +   +   +    L P +VG    L     F  +  G    GL
Sbjct: 311 AIVFAILILVLQQVDGNILLPRIVGDSTGLSGFWVFLAIFLGGVIGGL 358


>gi|149174938|ref|ZP_01853562.1| putative membrane protein-putative a permease [Planctomyces maris
           DSM 8797]
 gi|148846275|gb|EDL60614.1| putative membrane protein-putative a permease [Planctomyces maris
           DSM 8797]
          Length = 403

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/363 (13%), Positives = 107/363 (29%), Gaps = 56/363 (15%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
            Y  +    P + A+ I     P+    + K +        +  + V+    +  + L Y
Sbjct: 31  FYVTQAVLVPFVIAIFIATIVTPLVDLLVLKWKMPQIIAISLTLLLVLSFGFLICMTLIY 90

Query: 84  YGMLEM----KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
                +     +   K  +         +   D+P      +        P   +   E 
Sbjct: 91  STQQVIYKAENQYSEKFGIFINSVFEAAKEADDLPVRKLEEDTKEPQPETPDQKEAPPEA 150

Query: 140 F------------------------------LKTNGIDFIPRFASRFGMIFLDYCLSI-- 167
                                          LK   +D++        +  +   L+   
Sbjct: 151 PPTVIVDDGEAVAAEKPEIGWFQKMGIDLDTLKKATMDYMRNSLKSIAVSTMQSALNFTT 210

Query: 168 --IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
              F+ I + F               G         +I   + + IRS      ++++  
Sbjct: 211 TSFFVAIFVIFLL------------AGRDPNAVVKNEIYFEIEQKIRSYISTKLVLSLIT 258

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIP----GGAPISFTAVSIYLLIKGNIFNATCL 281
           G ++G    L G+   +   ++T ++  IP      A +    V+           A  +
Sbjct: 259 GTLVGVTLKLFGLELALVFAILTFLLNFIPSVGSVIATLLPIPVAFAQFSDSPWTIAGVI 318

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAV 340
            + G I++ I    + P L+G  ++L  +     L       G +G  +  P+  A+  V
Sbjct: 319 LIPGGIQMAIG-NGIEPKLMGEGLQLHPVTVLLALSFWTLLWGPIGAILAVPITAAIRIV 377

Query: 341 IWK 343
           + +
Sbjct: 378 LMR 380


>gi|229166826|ref|ZP_04294574.1| hypothetical protein bcere0007_17940 [Bacillus cereus AH621]
 gi|228616629|gb|EEK73706.1| hypothetical protein bcere0007_17940 [Bacillus cereus AH621]
          Length = 339

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 56/341 (16%), Positives = 123/341 (36%), Gaps = 25/341 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +G  R++++ I+++ LY LK     +L   I+ F           K + +   +    
Sbjct: 9   RSRGFQRFLVLIILVLVLYGLKSMINLILITFILTFLMDRFQKFISKKLKVNRKVVIAGL 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++   +  L        +++ +L+ +  L  Q+           P      +     
Sbjct: 69  YIVLVTFIVTTLYKYLPVLTIQISQLIYQFKLFFQN-----------PPDNEIIKYALST 117

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           ++  +  K + +      G+D I +  +  G + L   LS+I  +  L     +   I  
Sbjct: 118 INGMEVSKYIEQ------GVDVIYQSIANIGKVSLQILLSLILSLFFL----LEKERIIA 167

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 +     ++ +I+    +  RS         +IA+   ++   A  + G P  + 
Sbjct: 168 FTSKFKDSKLKIFYGEIAYFGERFARSFGKVIEAQFLIAVVNCVLTVIALVILGFPQLLV 227

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L V+  ++ +IP  G  IS   + I     G +     + ++  +   +    L P  + 
Sbjct: 228 LAVMVFLLGLIPVAGVIISLFPLCIIAYNVGGVVYVVYILVFITVIHALESYLLNPKFMS 287

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               LP   TF  L+     +G+ GL IG  +   +  +  
Sbjct: 288 AKTNLPVFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLD 328


>gi|295090747|emb|CBK76854.1| Predicted permease [Clostridium cf. saccharolyticum K10]
          Length = 356

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/354 (14%), Positives = 110/354 (31%), Gaps = 33/354 (9%)

Query: 13  RWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWP----IYSSFISKKEESSTFLAV 64
           + +++  +   +Y         F P  +A +      P    +      +       + +
Sbjct: 10  KALVVIAVTAGVYVSFKYFLPLFLPFAAAYLTALILRPTAAWLERRLQFRLFGRRFSVPI 69

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
                +       +L     G             ANQ    +P W+             T
Sbjct: 70  GMIGGIEL-----VLLTALLGAALFYGGRRLFEEANQIANQIPAWIDSF------DHWLT 118

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA--------LFF 176
                 ++   L +  L     + + + AS    + +   +                +  
Sbjct: 119 SMCRQVEAFCRLRDGVLVQAAREMLLQAASALKKMTMSTLVVNSVAAFTFCVEVMVAVAV 178

Query: 177 FYRDGFSISQQLDSLGEH----LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
           F+       Q++D L       +F   +   SR +     +      II      +    
Sbjct: 179 FFIASVLSLQEMDELRRRRRQSMFSREFALFSRRLVMTGNTWLRTQLIIMFITSCLCILG 238

Query: 233 YWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
             +   P  + LG+   I+  +P  G        S+ LL++   +    L     +   +
Sbjct: 239 LVMIRNPYCILLGLGIGILDALPLFGTGAVLVPWSLILLVQKQWYEGIVLAGL-FLVCCL 297

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           V + L   L+G  + L  L T   +  G++  G+LG+ +GP+ + +I  + +E 
Sbjct: 298 VREFLEARLMGDGMGLSPLETLAAIYVGLKLFGILGVLLGPIGLLIIEDLVEEY 351


>gi|160898823|ref|YP_001564405.1| putative phytochrome sensor protein [Delftia acidovorans SPH-1]
 gi|160364407|gb|ABX36020.1| putative phytochrome sensor protein [Delftia acidovorans SPH-1]
          Length = 879

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 49/141 (34%), Gaps = 3/141 (2%)

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
                  + I        ++ I  GL + +  W  GVP  +  GV+ AIM  +P    + 
Sbjct: 261 DALDEASQRIGKYLRMQFVVNITYGLPMAAGLWFIGVPGAILWGVLAAIMRFVPYVGAMI 320

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELF--IVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
             A  + L    +      L   G I     I +  + P+L G    L  L         
Sbjct: 321 SAAFPLALAFAVDPGWQMLLMTLGLIMALELISNNLIEPWLYGSSTGLSTLSIIVSATFW 380

Query: 320 VRTMGLLGLFIG-PVLMALIA 339
               G +GL +  P+ + L+ 
Sbjct: 381 PALWGPIGLILSTPLTVCLLV 401


>gi|27376578|ref|NP_768107.1| hypothetical protein bll1467 [Bradyrhizobium japonicum USDA 110]
 gi|27349719|dbj|BAC46732.1| bll1467 [Bradyrhizobium japonicum USDA 110]
          Length = 382

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 65/340 (19%), Positives = 123/340 (36%), Gaps = 32/340 (9%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +  +++  ++  LYF K FF PV+ A++ G    P  S    +    +    +I T   
Sbjct: 51  ALAGLLLIAVIGVLYFAKAFFLPVVMAVVAGTMLSPAASFLERRGVPRALGAVLIVTAVT 110

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             +  V  L                         P   W S +P      +        P
Sbjct: 111 TVVAFVVALIAV----------------------PAMEWSSRLPELGAQLKEKLHVFDRP 148

Query: 131 QSLKILSETFLKTN-GIDFIPRFASRFGMIFLDYCLSIIFMIIALFF----FYRDGFSIS 185
            +L    +T +  + G+  +P   + +    L++ LS  F    LFF     +   +   
Sbjct: 149 LALWKELQTMVGGSEGLPSLPLPKAEWVQPTLEF-LSPTFAEFLLFFATLILFIASWRDL 207

Query: 186 QQ--LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           ++  + + G+        +I   +   + +  L +T+I IG G+  G    + G+P+   
Sbjct: 208 RRALIMNFGDRDARLRTLRILNEIEVHLGNYLLTVTVINIGVGVATGIICAITGMPNPAG 267

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI--ELFIVDKTLRPFLV 301
           LG + A +  IP   PI+   V I + +         L    A     F+    + P ++
Sbjct: 268 LGALAAALNFIPIIGPIAMFIVLIVVGLVAFPTLGGGLMAGLAFGGITFLEGHFVTPTII 327

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           G  + L  L  F  L       G +G F+   L+ +  ++
Sbjct: 328 GRRLSLNALAVFIALAFWTWLWGPMGAFLSSPLLIVGLIL 367


>gi|312130455|ref|YP_003997795.1| hypothetical protein Lbys_1735 [Leadbetterella byssophila DSM
           17132]
 gi|311907001|gb|ADQ17442.1| protein of unknown function UPF0118 [Leadbetterella byssophila DSM
           17132]
          Length = 373

 Score = 58.7 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/257 (14%), Positives = 90/257 (35%), Gaps = 2/257 (0%)

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
              + +      +     P+        + A      +    +   I       ++ +  
Sbjct: 77  GGVMYAAYTQVIKLQDLFPQIEKRFNEWISALASLLSNFDIDKQQLIAEGQKHISDAVKS 136

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
             +F         ++ +SI  + + +F        +   +    +             V 
Sbjct: 137 GSQFLGATIGGTSNFLMSIALLPLYIFLMLMYRDFLKTFVFKWLKDTSKHKIVTTINKVK 196

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVS 266
            V+R    G+ ++ +  G +  +A +  G+   +  G   A +A+IP  G A  S   + 
Sbjct: 197 SVVRGYITGLVLVILIIGTLNSTALYFIGIDHALFFGFFAAFLAIIPYIGVALGSALPIL 256

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           + L+ + +   A  +    A+  F+    + P++VG  + +  L     L+   +  G+ 
Sbjct: 257 VALITQDSYLAAVMVAASFAVIQFLEGNFITPYVVGNQVSINALIAITALLLFGKLWGIG 316

Query: 327 GLFIGPVLMALIAVIWK 343
           G+ +   + A++ VI+ 
Sbjct: 317 GMILALPMTAILKVIFD 333


>gi|27382435|ref|NP_773964.1| hypothetical protein blr7324 [Bradyrhizobium japonicum USDA 110]
 gi|27355606|dbj|BAC52589.1| blr7324 [Bradyrhizobium japonicum USDA 110]
          Length = 394

 Score = 58.7 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 94/264 (35%), Gaps = 4/264 (1%)

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           L+ L +  +     +     L  Q  + +    S I         +   L  P+  +  +
Sbjct: 110 LVLLLFSALSGFGMVWGAGKLPEQTRLLLKVMDSQIDVLQEHLLSYGVDLLGPEWGRDFA 169

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
           +      G           G   L     +I  +  LF F  D  S  + L  L +  + 
Sbjct: 170 QWLFSDQGRFLSHAQFLLGGASTLLTGALVILFLGILFAF--DPNSHRESLVMLVKQSYR 227

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
           A  + +   +  V+R   +G  I  I   L +  A +L G+P    LG+   +   IP  
Sbjct: 228 ARTRAVMDEIGTVMRLWLVGQLIRIILMTLWVWIALYLIGLPGPFVLGLQAGLSNFIPYL 287

Query: 258 APIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
            PI     +++  +  G+      + ++  I   +    + P +    +++P   T   +
Sbjct: 288 GPIVAAIPIALVAMPLGSSLLIWAVLIY-TIIQSVEGYVIGPLIQRQAVEIPPAWTLVAI 346

Query: 317 VGGVRTMGLLGLFIGPVLMALIAV 340
           V      G+LG+ +   L+A+  V
Sbjct: 347 VILGALFGVLGIALAMPLVAIGRV 370


>gi|28210953|ref|NP_781897.1| putative permease [Clostridium tetani E88]
 gi|28203392|gb|AAO35834.1| conserved putative permease [Clostridium tetani E88]
          Length = 328

 Score = 58.7 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/326 (14%), Positives = 116/326 (35%), Gaps = 24/326 (7%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           FLK +F PV     I +TS PIY+      +++S    +++ + V  + I+  +++    
Sbjct: 26  FLKKYFKPVFVVFFIVYTSTPIYNVMFKISKKNSKLNGLLSILIVNFIIIILFIYMG--- 82

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
                 LV K+      G             ++  E+          + +  E +  ++ 
Sbjct: 83  -----NLVYKIKDTIVLGFQR--------SYLFIEEILINLNLDSNLIGVKIEEYYNSSI 129

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           I        +  +   +  ++     I  +F   D + I  ++    + + P      + 
Sbjct: 130 IK--SNLVKKGAVYTTESIINYFIGNIIAYFILVDKYVILNKI----KDIIPQNKVTFAF 183

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTA 264
                I++       + +         +    + + V +G+    + + P  G  + F  
Sbjct: 184 NRYIDIKNIIKLELTLVLITTFQTILGFMALNIENAVEIGMFCGFLDLFPYVGTIMVFLP 243

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           + +Y ++  N   A  L     + +      +    V   +K+  +        G +T G
Sbjct: 244 LILYKILIKNYIIAFGLLCLYILLIIN-RNIMEAKFVSSTLKVHPIVIISSFYIGFKTFG 302

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIK 350
           +LG+ I P+ + +   I+ E ++  +
Sbjct: 303 ILGIIIAPLYVLICKSIYSEGLIDCR 328


>gi|226363607|ref|YP_002781389.1| hypothetical protein ROP_41970 [Rhodococcus opacus B4]
 gi|226242096|dbj|BAH52444.1| hypothetical membrane protein [Rhodococcus opacus B4]
          Length = 374

 Score = 58.7 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 50/327 (15%), Positives = 110/327 (33%), Gaps = 21/327 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + + +  +       AP+  AL++     P+      K      +LA IA + V+   +V
Sbjct: 31  LVVTVAGIQVAAPILAPIFLALMLTVAVHPLPVWLHRK--GVPPWLATIAAIVVVNGILV 88

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L+      + ++  L+ +        +                      L+        
Sbjct: 89  VLVLSLALSVAQLATLLPQYADDFTSLVDSA----------------QSFLNSHGVNSTD 132

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           ++T L       +           L    +++F+++ L F   DG S   ++  + +   
Sbjct: 133 AQTLLSQVDYTKVFGVVDGILQAMLGIFSNLLFILVLLLFMAVDGSSYGSRMRFVTQ--M 190

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
                          R   +  T+  +   ++   A W  G+P  +  G+++ I   IP 
Sbjct: 191 RPEIATALAAFSVGTRKYLIVTTVFGLIVAVIDTGALWALGIPLPILWGLLSFITNYIPN 250

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G  +     ++  L++G       + +  ++   I+   ++P  VG  + L    TF  
Sbjct: 251 VGFVLGLVPPALLALLQGGPGLMLTVIVVYSVINVIIQSVIQPKFVGDAVGLSVTFTFLS 310

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIW 342
           LV     +G LG  +   L  +   + 
Sbjct: 311 LVFWTWILGPLGAILAIPLTLMAKALL 337


>gi|324504037|gb|ADY41743.1| Transmembrane protein [Ascaris suum]
          Length = 771

 Score = 58.7 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 79/210 (37%), Gaps = 17/210 (8%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG-----------FSISQQLDSLGEHLFP 197
           +      FG+  +++ + +I  + A+++                 ++ +  +   +    
Sbjct: 560 LAGVVIGFGLDIVNFLIEMIAFLTAVYYLLASSGDEWLPVKWISDALPKSSEGAADANSA 619

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
              K IS  +   I   F+  T +A+  GL     + L  +       ++ A+ A IP  
Sbjct: 620 FNVKHISTAIEDAISGVFVLSTKMAVFYGLYTYFVHTLFDLNIVFLPSMLAALFAAIPIM 679

Query: 258 APISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
           AP    A+ I+   L++G    A   F+     +   D                  T   
Sbjct: 680 APYVVCAIGIFELYLVRGETAAAILFFILSVAPVTFADA----AFYRQLRGSHPYVTGLA 735

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           ++GG+  +GL G  IGP+++ L+ V++   
Sbjct: 736 IIGGMYWLGLQGAIIGPIILCLLLVLFHVY 765


>gi|295680560|ref|YP_003609134.1| hypothetical protein BC1002_5726 [Burkholderia sp. CCGE1002]
 gi|295440455|gb|ADG19623.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1002]
          Length = 343

 Score = 58.7 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/339 (13%), Positives = 101/339 (29%), Gaps = 35/339 (10%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS--------KKEESSTFLAVI 65
            ++  ++   LY  +    P+   +I  +  + + +   S        ++       A +
Sbjct: 12  AILATLLGWGLYVGRPVLVPIAFGIIATYVVFGLANLLRSFPYVGARLREGPRHAIAATL 71

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
              +V                     +   +   ++     P++ + +   +        
Sbjct: 72  MLFTVYL------------------SVSLLLSDRDRLMAVAPKYEATLLVLLTKFAALLH 113

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +      I  +     N    +    S    +   +   I+ ++ A FF         
Sbjct: 114 IETEANWTAIRRDLLASVNVQAIMTSTLS---SVSSLFAAIIVVLLYATFFLIEHAKYRR 170

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + +   G          +   +   I       T++    G+      WL G+       
Sbjct: 171 KLVKFAG---GSTRIVSVIDEINSKIGVYLAMKTLLGAILGIASWICMWLVGLEFAELWA 227

Query: 246 VITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V+  ++  IP  G          +  L  G    A  LF+   +  F+V   L P+L+GG
Sbjct: 228 VLIGLLNFIPYAGSWISVAVPTLLAALQFGQWNAAIVLFISLTLANFVVGHLLDPWLMGG 287

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            + L        L       G+ G F+  P+ + L+  +
Sbjct: 288 SLNLSPAMILISLAVWSSIWGIAGAFLAVPITVGLVIAL 326


>gi|282875485|ref|ZP_06284356.1| putative membrane protein [Staphylococcus epidermidis SK135]
 gi|281295512|gb|EFA88035.1| putative membrane protein [Staphylococcus epidermidis SK135]
 gi|329726282|gb|EGG62751.1| putative membrane protein [Staphylococcus epidermidis VCU144]
 gi|329733389|gb|EGG69722.1| putative membrane protein [Staphylococcus epidermidis VCU028]
          Length = 361

 Score = 58.7 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/330 (13%), Positives = 108/330 (32%), Gaps = 13/330 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P L +  + +   P  +             A I T+ +  + I+ ++  F   ++   
Sbjct: 41  FLPFLISGFLFYICLPFQNILEKWGFPR---WASITTIFIGLIVIIAIVVSFIAPIIISN 97

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
                    +            +       +  T  ++          T + +N + +I 
Sbjct: 98  INNLIKQTPSLQKEAEQLINFSLRQMDKLPDDVTHRINKAVKSMGDGATSILSNSVSYIT 157

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
            F S            +I +   L +  +D       +    +     +   + + +   
Sbjct: 158 SFIST--------VFLLIMVPFFLIYMLKDHEKFIPAIGKFFKGERKVFVVDLLKDLNFT 209

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYL 269
           ++S   G   ++I  G++L   Y + G+P    L +   +  +IP  G  +SF   +I  
Sbjct: 210 LKSYIQGQVTVSIILGIILYIGYTIIGLPYTPLLVLFAGVANLIPFLGPWLSFAPAAILG 269

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           +I G       + +   I   +    + P ++G  + +  L     ++      G   + 
Sbjct: 270 IIDG-PSTFIWVCVVTLIAQQLEGNVITPNVMGKSLSIHPLTIIVVILAAGDLGGFTLIL 328

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +   L A+I  +        +   +K +SN
Sbjct: 329 VAVPLYAVIKTLVSNIFKYRQRIVDKANSN 358


>gi|222831870|gb|EEE70347.1| predicted protein [Populus trichocarpa]
          Length = 217

 Score = 58.7 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 73/193 (37%), Gaps = 2/193 (1%)

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
           +F SRF + F +   +I  + + + F   +  ++ Q+   L         +     + + 
Sbjct: 2   KFVSRFLLSFSNVVTNIFVLFLIVVFMLAEAPTVKQKFTKLIVTENTVTQQNYIERILQG 61

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
           +       TI ++  GL +     +  +   +    +  ++  IP  G+ I+   V +  
Sbjct: 62  VIGYLGVKTITSVMTGLCIYFVLSVLDIQYAILWATLVFLLNYIPNIGSIIAAVPVIVQS 121

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            +         + +   +   +V   L P ++G  + L  L  F  L+     +G +G+ 
Sbjct: 122 FLLNGFITGLVVSIAFILINTVVGNVLEPKMMGRKLGLSTLIVFLSLLFWGWLLGTVGML 181

Query: 330 IG-PVLMALIAVI 341
           +  P+ M L   +
Sbjct: 182 LSVPLTMGLKIAL 194


>gi|241518648|ref|YP_002979276.1| protein of unknown function UPF0118 [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240863061|gb|ACS60725.1| protein of unknown function UPF0118 [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 353

 Score = 58.7 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/338 (14%), Positives = 125/338 (36%), Gaps = 17/338 (5%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           P+     + ++  ++ L F + F  P++ + ++     PI      +     +    +  
Sbjct: 9   PRWTAIGLFIYASILFLSFAREFLVPIVLSFLLALVFSPIRRFLDER--GVPSVATSLII 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKH 126
           V  +   +  +L      +    E + ++  A Q  +  + + LS +         + + 
Sbjct: 67  VGALIAALAIILGAIIVPVSGYVESLPRIEQAIQEKLAGMSQALSGLFEASRRLTDFLRS 126

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            +       L    L T+   F+P   ++     +     +             G  + +
Sbjct: 127 HAANVQQVELRGNGLITSAALFVPALIAQTLFTLVLLLFLLA-----------SGDILHE 175

Query: 187 QLDSLGEHLFPA-YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +L  +   +       +IS  + + +    L +T I +  G V+ +  WL+G+P+ +  G
Sbjct: 176 RLVEILPTVQDKNRAVEISHDIERKLSRYLLTITTINVCLGGVIAALLWLSGMPNPLLFG 235

Query: 246 VITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V+  I   +P   P+     A ++ L+    +  A  +     + + I  + + P+ +G 
Sbjct: 236 VLAFICNFVPYLGPLVSMTAACAVALISSSGVGFAVAIASLYLLVMTIEGQIITPYFIGR 295

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            ++L  +  F  +        ++G+ +   L+  ++V 
Sbjct: 296 RLRLNTVVVFVAISFWAWLWSIVGMLVAVPLLVTVSVF 333


>gi|313157302|gb|EFR56727.1| putative membrane protein [Alistipes sp. HGB5]
          Length = 368

 Score = 58.7 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 126/340 (37%), Gaps = 14/340 (4%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS---KKEESSTFLAVIATVSVMCLFIVP 77
           L  +++ +     VL + ++     P+     +   K  +   +LA +AT+ V+ + +  
Sbjct: 22  LFLVWYFRSIVVYVLISAVLAVMGNPLVKRLAALHIKGWKVPRWLAALATLIVIWVVLAT 81

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           L  LF   +      +S V  A      +   ++      +  E +    S     + L+
Sbjct: 82  LCSLFVPLVFNKIYQLSNVDFA-TVVASIEEPIAR--AQSYLHEFFAMPESTFSLSEALA 138

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
               +   I+ +    +    + L   ++I  +    FFF RD       + ++    + 
Sbjct: 139 SALKQVIDIESLNTVFASIVNVVLSSVIAIFSITFITFFFLRDEGLFYAMITAMFPERYH 198

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH--VALGVITAIMAMIP 255
               +    V  ++   F G+   ++   + +       G+ +     +G++  +M ++P
Sbjct: 199 ENITRALDSVTLLLARYFTGILSESLLLMVAVSLTMMAFGMKAADAAFIGLVMGVMNVVP 258

Query: 256 GGAPISFTAVSIYLLI----KGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGGPIKLPF 309
              P+    VS+++ I     G     T + + G++ +   + D  L+P L    +K   
Sbjct: 259 YAGPLIGGVVSVFVGIVTPIGGMTVGHTAVVIIGSLLILKGLDDFVLQPTLYSSRVKAHP 318

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           L  F  ++      G+LG+ +      ++ V  KE     
Sbjct: 319 LEIFLVILIAGSLAGILGMLLAIPSYTVLRVFAKEFFSQF 358


>gi|293366995|ref|ZP_06613670.1| conserved hypothetical protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291318970|gb|EFE59341.1| conserved hypothetical protein [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 372

 Score = 58.7 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/330 (13%), Positives = 108/330 (32%), Gaps = 13/330 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P L +  + +   P  +             A I T+ +  + I+ ++  F   ++   
Sbjct: 52  FLPFLISGFLFYICLPFQNILEKWGFPR---WASITTIFIGLIAIIAIVVSFIAPIIISN 108

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
                    +            +       +  T  ++          T + +N + +I 
Sbjct: 109 INNLIKQTPSLQKEAEQLINFSLRQMDKLPDDVTHRINKAVKSMGDGATSILSNSVSYIT 168

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
            F S            +I +   L +  +D       +    +     +   + + +   
Sbjct: 169 SFIST--------VFLLIMVPFFLIYMLKDHEKFIPAIGKFFKGERKVFVVDLLKDLNFT 220

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYL 269
           ++S   G   ++I  G++L   Y + G+P    L +   +  +IP  G  +SF   +I  
Sbjct: 221 LKSYIQGQVTVSIILGIILYIGYTIIGLPYTPLLVLFAGVANLIPFLGPWLSFAPAAILG 280

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           +I G       + +   I   +    + P ++G  + +  L     ++      G   + 
Sbjct: 281 IIDG-PSTFIWVCVVTLIAQQLEGNVITPNVMGKSLSIHPLTIIVVILAAGDLGGFTLIL 339

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +   L A+I  +        +   +K +SN
Sbjct: 340 VAVPLYAVIKTLVSNIFKYRQRIVDKANSN 369


>gi|239827804|ref|YP_002950428.1| sporulation integral membrane protein YtvI [Geobacillus sp. WCH70]
 gi|239808097|gb|ACS25162.1| sporulation integral membrane protein YtvI [Geobacillus sp. WCH70]
          Length = 343

 Score = 58.7 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/326 (13%), Positives = 103/326 (31%), Gaps = 4/326 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
            FL  +  P++ AL       P   +  +                 + +      FL   
Sbjct: 17  LFLLPYSLPLVFALATALLLEPAVKNLQNNYRLKRVHAVTTVFSLFLIIVGFAFYFLIVI 76

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + ++     K+         V           ++S +  + ++  ++     +  L   
Sbjct: 77  LVQQIMTFSQKLPHFLSEATEVFNKFIQT-WESYSSSIPKEIITSLENSIETIQRLLLEF 135

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
             +        F  +   + +  +  ++ALF    D   + ++L              I 
Sbjct: 136 ATNSTQSIV-HFITLIPGFLIHFLVYLVALFLISLDLPKLKKRLKKYLSERTHQRLAMIV 194

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
             + K          ++++    +  +   L  V   V + ++  ++ ++P  G      
Sbjct: 195 TQLSKAGIGFIKAQFLLSLITFFLALAGLLLLKVDYAVIMALLIVVVDILPILGTGSVLV 254

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
              I  +  GN      L +   I   I  + + P +    + +  L     +  G + +
Sbjct: 255 PWGIISIANGNSGLGIGLIVLFVIITVIR-RIIEPKVFSTNLGISPLAALVSVYLGFQLL 313

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAI 349
           G +GLFIGP  + L+  + K  ++  
Sbjct: 314 GFIGLFIGPAFVILVETMVKAGVIKF 339


>gi|146328781|ref|YP_001209215.1| hypothetical protein DNO_0295 [Dichelobacter nodosus VCS1703A]
 gi|146232251|gb|ABQ13229.1| conserved hypothetical membrane protein [Dichelobacter nodosus
           VCS1703A]
          Length = 353

 Score = 58.7 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/342 (12%), Positives = 104/342 (30%), Gaps = 11/342 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            NP  +   +    + ++ + +  +  PV+ + +I +    +      K      F   +
Sbjct: 13  NNPSLMALLLFGCTLSLAFFSIGQWLIPVIISAVIAYLLEGLIKK-CEKNGVRRIFAVSV 71

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +    L I   + +    + + K L++ + +           +  +P           
Sbjct: 72  VFLLFSFLIIYIFIGVLPILINQAKGLITNLPVYLS---YAQEKMHILPKRFPEIISQQD 128

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                 S+      + K      I         + +   L  I +   L    +D   I 
Sbjct: 129 IDLMLGSMNAAVAEYTKILLSKKIFESLFAVFTVLVYIILIPILIFFFL----KDKVKIL 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L            + I   V   I +   G  +  +   ++    + + G+   + L 
Sbjct: 185 SWLGQFLPD-NHQIIQDIWTEVDIQIGNYIRGKFVEVMIIWIMCFIPFNILGLQYSLLLS 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGG 303
           ++  +  +IP  GA I    V I   ++  + +           + I+D   + P +   
Sbjct: 244 LMVGLSVLIPYIGATIVTFPVLIVAYMQFGLNSGFWWSTGFYFVVQILDGNVIVPVIFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            + +  +     ++      G  G+F    L  L+  I +  
Sbjct: 304 AVSIHPIAIIMAVLVFGGLWGFWGIFFAIPLATLVKAIVEAW 345


>gi|294677804|ref|YP_003578419.1| hypothetical protein RCAP_rcc02282 [Rhodobacter capsulatus SB 1003]
 gi|294476624|gb|ADE86012.1| protein of unknown function UPF0118, transmembrane [Rhodobacter
           capsulatus SB 1003]
          Length = 348

 Score = 58.7 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 94/299 (31%), Gaps = 8/299 (2%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P+  AL++G    P+   +   +   +   +    +++          L       + EL
Sbjct: 30  PMALALVVGVVLSPLSDLWERLRFSPAMGASASLVLTLAA-----FGTLGLLLQPLIAEL 84

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
           V +          V +    +  G+ A+           +         +   +  +   
Sbjct: 85  VHQAPKVWADSQEVMKAFRGLFAGLKAATRELSGAVAEGARAEAGPAPQQMVDLPAVTTG 144

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
           A           L+ +  +   FF              L          +  R    ++ 
Sbjct: 145 ALMIAPAIAAQALTFVGTLF--FFLLTRSEIYDWAARRLVSPAGRGQLSQRLRRAEGIVS 202

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA-MIPGGAPISFTAVSIYLLI 271
             FL +T+I    G+    A    G+P  ++ G++  ++  ++  G      A+ +  + 
Sbjct: 203 RYFLTITLINAALGIATAIALQALGLPGALSWGIVAFLLNYVVYLGPAAVAVALLLAGVA 262

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             +   A    L     + +  + + P LVG  + L  L  F  L+ G+   G +G  +
Sbjct: 263 AFDGGAAAVPVLVYGALITLEGQFVTPALVGRRMALNPLLVFVALLFGLWLWGAIGGIV 321


>gi|85373367|ref|YP_457429.1| permease [Erythrobacter litoralis HTCC2594]
 gi|84786450|gb|ABC62632.1| predicted permease [Erythrobacter litoralis HTCC2594]
          Length = 382

 Score = 58.7 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 81/249 (32%), Gaps = 10/249 (4%)

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
            A+E++    ++   +K      +       +         +      +++ +II L+  
Sbjct: 125 QATEVFEWAQANGLGVKEADLQAIAGQLASGVGTVTRALTGLAGGLTSAVLIVIIGLYVA 184

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             D     + ++ +               +   +R    G  +  + EG+       +  
Sbjct: 185 L-DPNLYERGVEWMAPRQNRRELHVTLVKMAYTLRRLMAGRLVGMLIEGIFTYIMLTVVA 243

Query: 238 -------VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
                  VP    L ++T ++A +P    I    + I +   G         +   +   
Sbjct: 244 QLIGIGTVPMAALLAILTGLLAFVPNIGAIVSGVLMITVGFSGGYDMGIYTLVVYFLVQN 303

Query: 291 IVDKTLRPFLVGGPIKLPFLPTF-FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           +    + P +    + L       F L+ G+   G+LGLF+   LMA+I V  +      
Sbjct: 304 VDGYIVIPMIAKKTVDLAPALVLGFQLIMGI-LFGILGLFLADPLMAMIKVALERRSEQN 362

Query: 350 KENKEKISS 358
           +  + +   
Sbjct: 363 EIKQARARE 371


>gi|170768767|ref|ZP_02903220.1| inner membrane protein YdgG [Escherichia albertii TW07627]
 gi|170122315|gb|EDS91246.1| inner membrane protein YdgG [Escherichia albertii TW07627]
          Length = 360

 Score = 58.7 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/328 (13%), Positives = 100/328 (30%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +        
Sbjct: 23  TLNGLKIVIMLGMLVIILCGIRFAADIIVPFILALFIAVILNPLVQRMVRWRVPR-VLAV 81

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            I    ++   ++ L +L        + L             + + L  +   +   +L 
Sbjct: 82  SILMAIIVMAMVLLLAYLGSTLNELTRTLPQYRNSIMTPLQALEQLLQRVGIAISVDQLA 141

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 142 RYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 183

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +L  +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 184 LPGKLQQMMAR--PIEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLASLDVRFAFV 241

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+    + A  +     +   +    L P ++G
Sbjct: 242 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMG 301

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 302 RGLGLSTLVVFLSLIFLGWLLGPVGMLL 329


>gi|117926744|ref|YP_867361.1| hypothetical protein Mmc1_3470 [Magnetococcus sp. MC-1]
 gi|117610500|gb|ABK45955.1| protein of unknown function UPF0118 [Magnetococcus sp. MC-1]
          Length = 362

 Score = 58.7 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 53/341 (15%), Positives = 118/341 (34%), Gaps = 12/341 (3%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + +PQ +     +  + +  YFL    APV++AL I +    + +  +            
Sbjct: 11  LRHPQVVGLLAALLTVWIVFYFLGSALAPVITALFIAYLLDSLVTPMVHYHIPRP----- 65

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +AT+ V  LF+  +  L    +  +     +V    Q    + + L +    +  S    
Sbjct: 66  LATLCVFSLFVFAMALLILGLVPIIG---QQVTELVQEMPRITQVLKEQIRSLIESYSGI 122

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
            + +  + L +      K      +           +   + +  +   +FFF  D   +
Sbjct: 123 INPALVEDLLVDLMNKAKEASTQSLG-LVGHVSQGLITTGVYLFLVPFLVFFFLLDKSEL 181

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +   +L         +++ +     +     G     +  G +    + +      + +
Sbjct: 182 RKSYSTLLPD-EQKLLEQVVQEANAGLGGYIRGKFWEMMLVGSLAFFVFTILEFRYALIM 240

Query: 245 GVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVG 302
           GV+T +  +IP  G  +    V+I  L +          L+    + +VD   + P ++G
Sbjct: 241 GVLTGMSVLIPFVGVAVVALPVAILGLAQWGFGMDGFKPLFAYAIIQVVDANLVAPLILG 300

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              K+        ++      GLLG+F    L  L   I++
Sbjct: 301 ESAKIHPTTFIIAVLVFGSLWGLLGVFFAVPLAVLARSIYQ 341


>gi|58336393|ref|YP_192978.1| permease [Lactobacillus acidophilus NCFM]
 gi|227902553|ref|ZP_04020358.1| permease [Lactobacillus acidophilus ATCC 4796]
 gi|58253710|gb|AAV41947.1| putative permease [Lactobacillus acidophilus NCFM]
 gi|227869642|gb|EEJ77063.1| permease [Lactobacillus acidophilus ATCC 4796]
          Length = 346

 Score = 58.7 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 50/339 (14%), Positives = 113/339 (33%), Gaps = 19/339 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            N   + R+++  +I+  LY ++     +L   I  +    +         +  T + V+
Sbjct: 9   KNNVLLRRFVVFLLIVACLYEMRAMMNTILLTFIFTYVIVHLIHLVQRYIPKMPTGVIVV 68

Query: 66  AT-VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            T + ++ L    +       ++++ ++V  V+   +                      T
Sbjct: 69  VTYLIILALLYFVITVYLPMLIVQISKMVKSVMAFYEKN-----------ESSRLVSYIT 117

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +++S  + +          + + F    A+  G + +   +S+I          +     
Sbjct: 118 RYISKGELVTQ------AKHAMTFAFHTATNIGTLTIATFMSLILSFFYTIELNKMKEFS 171

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           S  + S          +   +               IA+    +      +  +P  VAL
Sbjct: 172 SLFVKSGYLKWLFEDIRYFDKKFTNTFGVVLEAQFFIALCNTALTVIGLVIMKMPQIVAL 231

Query: 245 GVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           G++  +++++P  G  IS   +SI     G I     +F+   I   +    L P  +  
Sbjct: 232 GLMVFLLSLVPVAGVIISLIPLSIIGYSVGGIRYVIYIFIMIMIIHAVEAYVLNPKFMAS 291

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
             +LP   TF  L+      G  GL +G  +      + 
Sbjct: 292 KTELPIFYTFLVLLVAEHFWGTWGLIVGVPIFTFFLDVL 330


>gi|156551109|ref|XP_001603296.1| PREDICTED: similar to ENSANGP00000014910 [Nasonia vitripennis]
          Length = 861

 Score = 58.7 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 71/200 (35%), Gaps = 5/200 (2%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
           G   L++ LS++    ALF+         + ++ L  +  P    + +  + + +   F 
Sbjct: 652 GSAVLNFALSMVVFFTALFYLLSSSGKTYKPIE-LITNFSPISCHRFATALQESVIGVFT 710

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG-APISFTAVSIYLLIKGNI 275
               +A   G+     + L  V           ++  +P   A  +    +I L      
Sbjct: 711 ATFKLASFFGMWTWFIHNLFQVKIVYLPSAFATLLGAVPFLDAYFACIPATIELWFTQGP 770

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             A   FL+  +   IV       + GG        T   + GGV  +G+ G   GP+L+
Sbjct: 771 LIAIIFFLFHFLACNIVVTEFYKEIKGGG---HPYLTGLSIAGGVFCLGIEGAIFGPLLL 827

Query: 336 ALIAVIWKESIMAIKENKEK 355
             I V    S   ++   E+
Sbjct: 828 CCIMVAINLSRRYLQSPSEE 847


>gi|90415986|ref|ZP_01223919.1| hypothetical protein GB2207_02097 [marine gamma proteobacterium
           HTCC2207]
 gi|90332360|gb|EAS47557.1| hypothetical protein GB2207_02097 [marine gamma proteobacterium
           HTCC2207]
          Length = 373

 Score = 58.7 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/349 (16%), Positives = 119/349 (34%), Gaps = 14/349 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             + ++  +I+ + LV    L     P+ +ALI+ F    + ++ +            +A
Sbjct: 15  TEEALLLTIILIVSLVVFATLGAVLGPLFAALILSFLLQGVVNTLVRYGVPR-----AMA 69

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS-DIPGGMWASELWTK 125
            VS   LF+   + +    +  +    S ++    + I   R L+  IP          +
Sbjct: 70  LVSTYLLFVAGFVSVIVGLIPIIGRQTSLLIGELPNMIAGLRDLAVAIPERYAEYVSPEQ 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S  Q L       L+      I  F    G++     + ++ M     F  +D   + 
Sbjct: 130 FQSITQRLSEEVGRLLEQALSFSISSFPGIIGVMIYLVLVPLLVM-----FMLKDKDQLL 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L +L      +  + I   +     +   G  I  +  GLV  + +   GV     L 
Sbjct: 185 LFLSNLLPE-ERSVMRTIWNEMDMQFTNYVRGKAIEILIIGLVSYAVFLWLGVNYAALLA 243

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATC-LFLWGAIELFIVDKTLRPFLVGG 303
           ++  +  ++P  GA +    V +   ++    N    LF    +  F+    L P L   
Sbjct: 244 LLVGLSVLVPYIGATVVTIPVLLVGYMQWGFSNDFFWLFGAYGVIQFLDGNLLVPLLFSE 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            + L  +     ++      G  G+F    L  L+  ++       ++ 
Sbjct: 304 VVNLHPVFIIVSVLLFGGIWGFWGVFFAIPLATLVKAVFNAWPRRAQQE 352


>gi|242242322|ref|ZP_04796767.1| permease [Staphylococcus epidermidis W23144]
 gi|242234224|gb|EES36536.1| permease [Staphylococcus epidermidis W23144]
          Length = 372

 Score = 58.7 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/330 (13%), Positives = 108/330 (32%), Gaps = 13/330 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P L +  + +   P  +             A I T+ +  + I+ ++  F   ++   
Sbjct: 52  FLPFLISGFLFYICLPFQNILEKWGFPR---WASITTIFIGLIAIIAIVVSFIAPIIISN 108

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
                    +            +       +  T  ++          T + +N + +I 
Sbjct: 109 INNLIKQTPSLQREAEQLINFSLRQMDKLPDDVTHRINKAVKSMGDGATSILSNSVSYIT 168

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
            F S            +I +   L +  +D       +    +     +   + + +   
Sbjct: 169 SFIST--------VFLLIMVPFFLIYMLKDHEKFIPAIGKFFKGERKVFVVDLLKDLNFT 220

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYL 269
           ++S   G   ++I  G++L   Y + G+P    L +   +  +IP  G  +SF   +I  
Sbjct: 221 LKSYIQGQVTVSIILGIILYIGYTIIGLPYTPLLVLFAGVANLIPFLGPWLSFAPAAILG 280

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           +I G       + +   I   +    + P ++G  + +  L     ++      G   + 
Sbjct: 281 IIDG-PSTFIWVCVVTLIAQQLEGNVITPNVMGKSLSIHPLTIIVVILAAGDLGGFTLIL 339

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +   L A+I  +        +   +K +SN
Sbjct: 340 VAVPLYAVIKTLVSNIFKYRQRIVDKANSN 369


>gi|156742554|ref|YP_001432683.1| hypothetical protein Rcas_2589 [Roseiflexus castenholzii DSM 13941]
 gi|156233882|gb|ABU58665.1| protein of unknown function UPF0118 [Roseiflexus castenholzii DSM
           13941]
          Length = 348

 Score = 58.7 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/311 (13%), Positives = 103/311 (33%), Gaps = 15/311 (4%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           +  A ++     PI              +  +  +  + L  + +  L     +E + L 
Sbjct: 39  LFGATLLSLAIAPIAERLAHWHVPRGITVLAVYILGGIVLIAL-IELLIPVIRIEAQALR 97

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
           S+     Q    V  W+S +P             S   S+   +   L     +FI    
Sbjct: 98  SQGPHLFQ---QVTTWVSGLPV----------IGSTVLSMHQSTIPNLGQQLGNFIDSVV 144

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
            R         L ++ + +  F F  D     + + S          +     + + +  
Sbjct: 145 -RILFGTGGLLLDLLIVTVLSFLFITDPGLPKRLIASWIPPAVQPRLQDFIERLRRRLTR 203

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
                 +IA+   +V      + GVP  + +G++  ++ ++P         +++   +  
Sbjct: 204 WVWAQILIALYFVVVYSIGLSVLGVPFALTIGIVGGLLEIVPYVGGAFALILAVISSLSV 263

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
           + +    + ++  + + +    + P L G  I +        L  G +  G++G+F    
Sbjct: 264 SPWLVVWVIVFHVVVVELESHVIAPALYGRIIGVHPALMLLALFVGAKAGGVVGVFFAVP 323

Query: 334 LMALIAVIWKE 344
           +  +I    +E
Sbjct: 324 ITVVILACGQE 334


>gi|322807958|emb|CBZ05533.1| conserved membrane protein [Clostridium botulinum H04402 065]
          Length = 290

 Score = 58.7 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 95/281 (33%), Gaps = 21/281 (7%)

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            + I T+    + I  L +     + E+ +                          +   
Sbjct: 2   ASFIVTLIFFSIIITLLFWGINLLVHEVIDFGRNAQAYLYSHEKE--------ISNYVDN 53

Query: 122 LWTKHLSHPQSLKILSETFLKTN---GIDFIPRFASRFGMIFLDYCLSI-------IFMI 171
           ++  +L+ P S+    E  +  +     + I    S+    F+    SI       +F +
Sbjct: 54  IYRYYLNLPPSIIDSIEKTIGNSFSKISNIIVFITSKIVSSFIGLLTSIPYILMLILFTL 113

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
           ++ +FF +D    + ++  L  +     +  I     +++    L    +          
Sbjct: 114 LSTYFFTKDITKHNNKISKLIFNEHSYKFSHIYLESKRMLNGYILSYLTLIGITFFETLI 173

Query: 232 AYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIEL 289
            +++  +   +   +  AI   +P  G    +  ++ IY+L+  N      L +     +
Sbjct: 174 IFFIFNIKYSIMFSITAAIADFLPILGIGTIYVPLALIYILVYKNYVVGIGLLI-SYAAV 232

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + + L P L+   + L  +     +  G++  G+ G+F 
Sbjct: 233 STIRQILEPKLLSSSLGLHPISILAAIFIGLKANGISGMFF 273


>gi|327404430|ref|YP_004345268.1| hypothetical protein Fluta_2445 [Fluviicola taffensis DSM 16823]
 gi|327319938|gb|AEA44430.1| protein of unknown function UPF0118 [Fluviicola taffensis DSM
           16823]
          Length = 352

 Score = 58.3 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/335 (13%), Positives = 118/335 (35%), Gaps = 21/335 (6%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I+ +++V LY  +    P++  +I+      + S F     +   F   + T+    +
Sbjct: 18  LIILALLVVILYLGRSLIIPLIFGVILWLLMRKVRSLFYVIGLKDRWFPKALKTLLSTGI 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               +  +       ++EL+    + N +   + +    +                  S 
Sbjct: 78  LFSLVWVIGLIFERNIQELIKYYDVYNTNLTSILKDFDSL------------------SS 119

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
             + +     N  D I ++ S   M       +++ ++I + F   +  S   ++ +L  
Sbjct: 120 YKIEDITKSFNSNDLITKYFSSVLMSLQTIISNVVIVLIYMLFIILEESSFKFKVKALFP 179

Query: 194 -HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             +       + R + K I       ++IA+   ++  S   L G+ +     ++  + +
Sbjct: 180 NPVMYDERILVIRRIEKAITDYLGIKSLIALVSSVIAYSLLTLMGLNAPFFWALLIFMFS 239

Query: 253 MIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            IP    +   F      ++  G+   +  +        FI    + P ++G  + +  L
Sbjct: 240 FIPFFGVLISSFLPALFAIVQFGSYSESLIILFSLGSVQFIAGNIVEPKIMGNTMNVSPL 299

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
                L       GL G+F+   +  ++ +++ + 
Sbjct: 300 VVILSLGFWGFIWGLPGMFLSVPITVIMVIVFSKF 334


>gi|325272114|ref|ZP_08138549.1| hypothetical protein G1E_04512 [Pseudomonas sp. TJI-51]
 gi|324102757|gb|EGC00169.1| hypothetical protein G1E_04512 [Pseudomonas sp. TJI-51]
          Length = 356

 Score = 58.3 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/344 (14%), Positives = 119/344 (34%), Gaps = 18/344 (5%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + + ++  +++F+   ++  L G  APVL+ +++ F    + ++    +  +     ++ 
Sbjct: 15  DEEAVVLAVLLFLAFTAVLTLGGMLAPVLAGMVLAFLMQGLVNALERLRVPTR-LAVMLV 73

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
               M    + +L L      ++  L +++          P  L      +        H
Sbjct: 74  FALFMGALALFMLVLVPLLWHQLITLFNEL----------PGMLGKWQSLLLLLPERYPH 123

Query: 127 LSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           L   + +    E+     G    +   F+     + ++  + ++ + I +FFF +D   I
Sbjct: 124 LVSDEQVLHAIESVRGEIGKFGQWALTFSLSSLPLLVNAMIYLVLVPILVFFFLKDRELI 183

Query: 185 SQQLDSLGEH---LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            + +         L      +++R +   IR   + + I  I   +   S          
Sbjct: 184 GRWVSGSLPRQRTLLNRVGSEMNRQIANYIRGKGIEILICGIATYIAFISLGLNYAALLA 243

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           + +G+   +  +      +  T ++++    G+ F    L    AI   +    L P L 
Sbjct: 244 LLVGLSVVVPYVGAVVVTVPVTLIALFQWGWGDQF--IYLMTVYAIIQALDGNVLVPLLF 301

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
              + L  +     ++      G  G+F    L  LI  +    
Sbjct: 302 SEAVSLHPVAIICAVLLFGGLWGFWGIFFAIPLATLIKAVLDAW 345


>gi|255525780|ref|ZP_05392710.1| protein of unknown function UPF0118 [Clostridium carboxidivorans
           P7]
 gi|255510513|gb|EET86823.1| protein of unknown function UPF0118 [Clostridium carboxidivorans
           P7]
          Length = 338

 Score = 58.3 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 74/192 (38%), Gaps = 5/192 (2%)

Query: 155 RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS- 213
           +       +  ++   I+   FF  +   I   L+          +K  S      + S 
Sbjct: 141 QLAANIGKWSANVFLAIMLSLFFMLEKNKIITFLEKFKTSKVSVMFKYFSFFGNNFLNSF 200

Query: 214 --TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLL 270
                   +IA    ++      +   P  ++LG +  I++++P  G  IS   +S+   
Sbjct: 201 GKVIQAQIVIAFANTIISVIMLSILKFPQLISLGFMIFILSLVPVAGVIISLIPLSLIAF 260

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             G       + +  A+   +    L P L+   I+LP   TF  L+     MG+ GL I
Sbjct: 261 KIGGFTKVLYVLIMVAVVHSLESYVLNPKLMSAKIELPIFFTFIILIASEHFMGVWGLLI 320

Query: 331 G-PVLMALIAVI 341
           G P++M ++ ++
Sbjct: 321 GIPLVMFILDLL 332


>gi|242092826|ref|XP_002436903.1| hypothetical protein SORBIDRAFT_10g010840 [Sorghum bicolor]
 gi|241915126|gb|EER88270.1| hypothetical protein SORBIDRAFT_10g010840 [Sorghum bicolor]
          Length = 654

 Score = 58.3 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 80/236 (33%), Gaps = 26/236 (11%)

Query: 137 SETFLKTNGIDFIPRFASRFGMI---FLDYCLSIIFMIIALFFFY-RDGFSISQQLDSLG 192
           S T +     + +   A R        +++   ++  +  L++    +G   ++Q+  L 
Sbjct: 431 SSTLVLGGSANLMLSIALRILSGAAEVVNFLSQLMVFLWVLYYLITVEGGGATEQIIDLL 490

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             +      +   ++   I S  L    IAI +G +    +    V       V+  I A
Sbjct: 491 P-VSKQVKDRCVEVIDHAISSVLLATAKIAIFQGGLTWLLFKFFKVHFVYTSTVLGFISA 549

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL----- 307
           ++P                  +IF    L + G   L +V   +   L+           
Sbjct: 550 LVPILP-----------FWLSSIFATGELLMEGRYVLGLVVTVIHLMLMDYGTTTILEDI 598

Query: 308 ---PFLPTFFGLVGGVRTM--GLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                  T   ++GG+      L G  +GP++M ++  +       +  + E+ SS
Sbjct: 599 PGYNGYLTGLSIIGGMTLFPNALEGAILGPLIMTVVIALKNLYTEFVLADGEEASS 654


>gi|238749686|ref|ZP_04611191.1| AI-2 transport protein tqsA [Yersinia rohdei ATCC 43380]
 gi|238712341|gb|EEQ04554.1| AI-2 transport protein tqsA [Yersinia rohdei ATCC 43380]
          Length = 352

 Score = 58.3 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/315 (14%), Positives = 110/315 (34%), Gaps = 22/315 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +I+  +        P L A+ +     P+    + K +       V+    ++ L  +
Sbjct: 20  LVVIMAGIKAASPIVVPFLLAIFLAIILNPL-VKLLEKIKIPRALAIVLLVTLIVLLMAL 78

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
               L                  N+    +P++   +   M   + +    +   S+  +
Sbjct: 79  LFSRLGSSL--------------NEFARSLPQYRGMMLEKMRDLQEFAMRFNIDFSVDDI 124

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +    +  ++FI R  S+         L ++ ++  LF   R  + +    D+      
Sbjct: 125 MKHVDPSTAMNFITRILSQLSGAMASTFLLLMTVVFMLFEVERLPYKMQLMFDN------ 178

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
           PA    I +     +    +  T+I+I  G+V+       G+      G++  ++  IP 
Sbjct: 179 PAQGNAILKRALNGVTHYLVIKTVISIATGIVIWLFLAAMGIRFAFLWGLLAFVLNYIPN 238

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ ++     I  L+     +A  +     +   I    + P ++G  + L  L  F  
Sbjct: 239 IGSVLAAIPPIIQALLFNGFADAFAVTGGYILINLIGGNIIDPRMMGRGLGLSTLVVFLS 298

Query: 316 LVGGVRTMGLLGLFI 330
           L+     +G +G+ +
Sbjct: 299 LIFWGWLLGPVGMLL 313


>gi|328948175|ref|YP_004365512.1| hypothetical protein Tresu_1307 [Treponema succinifaciens DSM 2489]
 gi|328448499|gb|AEB14215.1| protein of unknown function UPF0118 [Treponema succinifaciens DSM
           2489]
          Length = 365

 Score = 58.3 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/341 (14%), Positives = 128/341 (37%), Gaps = 25/341 (7%)

Query: 9   QGIMRWMIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +GI   ++   I+++   LK    FF P+  AL++ F  +P   +    +        ++
Sbjct: 8   KGIFYILLFAAIILATVILKITSSFFIPLTLALMLSFVFYPFVKNLTKFR-----IPWIV 62

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + V+ L  V    +    +   + +++           V   +++             
Sbjct: 63  GIILVVILAAVAFFIIGNLLVASCRTVLNAYPKYEARFTTVYSLIAE-----------AF 111

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           H+   ++  ++   +       F+  FA             I+ + + + FF  +   + 
Sbjct: 112 HIPFDENSSLIINLWNSLGVRTFVQNFALAASGYMFSTAKVILVIALFIVFFLIEIRGMK 171

Query: 186 QQLDSLG--EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +++ +    E L       I++ + +V R   +   +I+   GL++    ++ G+   + 
Sbjct: 172 EKVKTAFPEERLNRKIMFIITKTIAEVTRYISIK-FLISFFTGLLVFLFCFIVGLDFAII 230

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAI--ELFIVDKTLRPFL 300
            G +  I+  IP  G+ +S+   + + +++        L++  A+    FI+   + P  
Sbjct: 231 WGFLAFILNFIPTFGSILSWVLTTGFAVLQFYPSFGKILYVGIAVLAVNFILGNIIEPRW 290

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            G  + +        L       G +G+ +   ++ +I +I
Sbjct: 291 EGSDLGISPFLILVSLSLWGWLWGFIGMILAVPILVIIKII 331


>gi|330719046|ref|ZP_08313646.1| permease [Leuconostoc fallax KCTC 3537]
          Length = 331

 Score = 58.3 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/317 (16%), Positives = 107/317 (33%), Gaps = 21/317 (6%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
             F + +L   I  + +  +        + S      I  + VM   I+ +       + 
Sbjct: 29  HHFMSLLLLTTIFAYLAMTLAKYIGRYSKLSHGLSVTIVYLIVMTALILGIKHGASTLIQ 88

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           ++  ++      N H   +   +               + +  Q    +S   L   G+ 
Sbjct: 89  QVDSMIHLAQHINWHKNGILNEI---------------YKNGHQYTSFISTNQLINTGLS 133

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            +  F      + L    S IF I      Y    +  +   +    +F   +  I+   
Sbjct: 134 QLSHFGHIIYELILALLFSFIFSIT-----YPKLRNWGKNFINSPFKMFFGEFYIIAHRF 188

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVS 266
             ++   F    II +    ++ SA  +   P  +   ++  I+ +IP  G  IS   ++
Sbjct: 189 ITILGKLFEVQLIICVINTTLMISALAILQFPYLLGFSIMIFILGLIPVFGVIISLIPLT 248

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           +   I G+   A  + LW A    +    L P L+     +P L     L+   R +G  
Sbjct: 249 VTAFIIGDWHTALVIILWVAFIHLLESYFLHPHLMSQKTHMPILVILINLIIMERLLGAW 308

Query: 327 GLFIGPVLMALIAVIWK 343
           GL +G  ++  +   ++
Sbjct: 309 GLIVGLPILTFLLDFFR 325


>gi|146341139|ref|YP_001206187.1| putative transport protein/permease [Bradyrhizobium sp. ORS278]
 gi|146193945|emb|CAL77962.1| putative transport protein/permease [Bradyrhizobium sp. ORS278]
          Length = 392

 Score = 58.3 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/359 (11%), Positives = 94/359 (26%), Gaps = 21/359 (5%)

Query: 17  MFIILVSLYFLKGFFAPVLS---ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           + + +  L F   + A +      +++G     + +               I  +++  L
Sbjct: 36  VILFMAGLAFSWYYAAALFLLFSGMLLGVALNAMTTLLGRVLPWPHPLRLAIVCLALAAL 95

Query: 74  FIVPLLFLFYYGMLEMKELVSKV---------------VLANQHGIPVPRWLSDIPGGMW 118
            +  +         + K L   +               +  +          +  P G  
Sbjct: 96  LVGIVFLGGTTIADQAKVLSDTIKSQLGNIKGFLDRNGIDTSFFDFNAGTQATSAPDGGS 155

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            +   +     P  L   S      +    I     +  +  +    +   ++     F 
Sbjct: 156 TTPTQSTSHGLPGGLPSPSAL---ASSGGAIVSQTFKLLLGTVSAVGNFFIVLFLGLAFA 212

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                    L  L    +      I   +   +    +          LV      + GV
Sbjct: 213 AQPAVYRSGLLFLAPAKYRDQATVIIDRISYTLERWLIAQITTMFAVFLVTWIGLAIIGV 272

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            S   LG+   ++A IP    I    + +   +      A   F+       +    L P
Sbjct: 273 QSSFILGIQAGLLAFIPTVGAIIAGVIVVLASLASGWVAAVSAFVLFLGVHAMESYVLTP 332

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
            +    + +P    F   +      G+ GL +   LMA+  V+        +      +
Sbjct: 333 LIQRQALDIPPATLFAFQILLGIVFGVWGLTLALPLMAIAKVMIDYFKSDRRTEDAAAA 391


>gi|312876641|ref|ZP_07736622.1| sporulation integral membrane protein YtvI [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796594|gb|EFR12942.1| sporulation integral membrane protein YtvI [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 371

 Score = 58.3 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 64/360 (17%), Positives = 118/360 (32%), Gaps = 24/360 (6%)

Query: 1   MRETMLNPQGIMRWMIMFI---ILVSLYFLKGF----------FAPVLSALIIGFTSWPI 47
           MRE   N   +    ++ I   I    Y +K F          F PV+  L I   S P+
Sbjct: 2   MREFTKNRFVVAMIYVILISAFIFSCAYLIKTFDLFVRFVIKAFIPVIIGLFIAEVSEPL 61

Query: 48  YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
                 +K  S T  A++  + +  +    L    Y  + E   LV+ +   +   I   
Sbjct: 62  LKYLEKRKV-SRTISAILILIVLNIILGFMLAEGIYILVNECMSLVASLQNIDYDKIY-- 118

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI---FLDYC 164
                +     + +     L  P    I S     TN ++ I   + +   +    L   
Sbjct: 119 ---QALDKLFASVKNIYSGLPGPIVNFIQSGVDELTNVLNQIATMSLKVIKVIPATLKGI 175

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
               F +++ FFF RD   +   L              I+  V   +        I+A+ 
Sbjct: 176 TVWFFSVLSGFFFMRDRHRMRTWLIQNFSAHLYRELSSIAFKVIDSVVDYAKSQIILAVL 235

Query: 225 EGLVLGSAYWLAGVPSHVA-LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
             L       +   P  +    ++  +  +   G+ I      +   I G+      L +
Sbjct: 236 MFLSGLIGLSIIKAPYFLVISLLLGLLSIIPIIGSGIILLPWIVGSFIAGDTNFGLKLLI 295

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              I L I +      +V   + +    T   +  GV   G  G  +GP+L+  +  +++
Sbjct: 296 VYLIILGIRE-FASIKIVASQVGISTFTTLVSIYAGVEIFGAWGFVVGPLLVVFLKAVYE 354


>gi|163732541|ref|ZP_02139986.1| hypothetical protein RLO149_11905 [Roseobacter litoralis Och 149]
 gi|161393901|gb|EDQ18225.1| hypothetical protein RLO149_11905 [Roseobacter litoralis Och 149]
          Length = 373

 Score = 58.3 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 66/352 (18%), Positives = 131/352 (37%), Gaps = 25/352 (7%)

Query: 14  WMIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            ++      +++ L+     F P++ AL++G    P+ + F      +   +  +A +  
Sbjct: 19  ALVAVGASATVWLLESGTPVFLPLVFALVVGVVFAPLSNFFDRL--GAPPVVGALAVLIT 76

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +   I   +FLFY  + E    V  +    Q      + LS +   M   E     ++  
Sbjct: 77  VLSVITLGVFLFYPVVAEFMTRVPFMWTELQ------QSLSGLKSTMENVENVQNQVA-- 128

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L       ++  G   +P  A         +   I+  +  L+FF      + + + S
Sbjct: 129 ITLAPEGSAEMEAPGTVAVPTVAGIL-SYLPSFAAQIMVFVGILYFFLLTKLELYKYIAS 187

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +  HL     ++    V +     FL +T I    G ++       G+P+    G+   +
Sbjct: 188 VTTHLSEKVLRRAEVEVSRY----FLAITAINACFGALVSLMLSAYGMPNAAYWGLGAFL 243

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK----TLRPFLVGGPIK 306
           +  +    PISF   +I LL+ G I     + +  A+   +++      + P  VG  + 
Sbjct: 244 VNYVLYLGPISF---AIVLLLGGLIVFDGAMSVLPALTYMLMNMTEGQFVTPTFVGKQMS 300

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +  L  F  LV  +   G +G  I   L+  +  I KE         ++  S
Sbjct: 301 VNPLLIFTSLVFWLWIWGPVGGIIAIPLLVWLRQINKEMHGRDPIQGDRDES 352


>gi|255023357|ref|ZP_05295343.1| membrane protein YueF [Listeria monocytogenes FSL J1-208]
          Length = 250

 Score = 58.3 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 82/241 (34%), Gaps = 14/241 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           + +    I+F++L   Y            F P+L A  + +   P+      +K      
Sbjct: 17  EILAVVAILFVLLQMKYIFSPIGIIVSTLFMPILVAGFLFYLFNPLVLFLEKRKVPR-LL 75

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++  ++ + L ++ ++ L      ++ EL   +    Q      +WL  +       +
Sbjct: 76  SVILIFIAFITLVVLAVMQLGPTLADQVAELAKAIPGYWQ---DFEKWLQGLSNNSALKD 132

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L    +        +S   + +  +D +             + + ++ +   +F+ ++DG
Sbjct: 133 L---DIKQELEKLNISLPKIMSVVVDGVASSFGAIISFVSSFVMILVTVPFIVFYMFKDG 189

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               +           +  K+I + + K I +      I  +  GL     Y + G P  
Sbjct: 190 HKFVESSGKFFPAGIRSEAKQIIKEMNKTISTYISSQAIDCMFVGLFTFIGYLIIGQPYA 249

Query: 242 V 242
           +
Sbjct: 250 L 250


>gi|182414963|ref|YP_001820029.1| hypothetical protein Oter_3149 [Opitutus terrae PB90-1]
 gi|177842177|gb|ACB76429.1| protein of unknown function UPF0118 [Opitutus terrae PB90-1]
          Length = 396

 Score = 58.3 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/346 (15%), Positives = 116/346 (33%), Gaps = 21/346 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + ++  ++ F      P+  A ++     P+      +         V+   +V+     
Sbjct: 38  VIVLGRAISFFSSVLWPLAVAGVLALILRPLVEVLEHRLRLRRLTAVVVLYGAVVLALAG 97

Query: 77  PLLFLFYYGMLEMKELVS-----KVVLANQHGIPVPRWL-------SDIPGGMWASELWT 124
            L+ +    + +    +S          N      P+WL       + +PG        +
Sbjct: 98  LLIAVLPPLIDQAVNFISYLPTLWENTLNYFRQHFPQWLDLIQRQLAKLPGVSGGEGEGS 157

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                  +L    ET L+      +       G     +  ++  + + LFFF       
Sbjct: 158 TLRDLSGALIKQLETVLRQAAPSLMAAGGGVLG--VFVFLTNLAIIPVYLFFFLLARGEP 215

Query: 185 SQQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
           + +L      L P        + R    ++ + F G  +I +  G +L + + L G+   
Sbjct: 216 ADELPQHLVFLRPRVRDDVVFLVREFVAIVVAFFRGQLLIGLIMGALLATGFSLIGLRFG 275

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLI---KGNIFNATCLFLWGAIELFIVDKTLRP 298
           + LG++  ++ ++P    I   A+++ L      G       + L   I   I    L P
Sbjct: 276 LILGLVLGLLNIVPYLGTIVGLAITLPLAFFQPDGGWHLIALVLLVVVIVQLIEGWVLTP 335

Query: 299 FLVGGPIKLPFLPTFFGLVG-GVRTMGLLGLFIGPVLMALIAVIWK 343
            ++G    L  +     +   G    G+LG+ +   L A     W+
Sbjct: 336 KIMGMQTGLHPVAIIVAVFFWGTAFGGVLGMLLAIPLTAFFVTAWR 381


>gi|312623252|ref|YP_004024865.1| sporulation integral membrane protein ytvi [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203719|gb|ADQ47046.1| sporulation integral membrane protein YtvI [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 370

 Score = 58.3 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 64/360 (17%), Positives = 112/360 (31%), Gaps = 24/360 (6%)

Query: 1   MRETMLNPQGIMRWMIMFI---ILVSLYFLKGF----------FAPVLSALIIGFTSWPI 47
           MRE   N   +    ++ I   I    Y +K F          F PV+  L I     P+
Sbjct: 1   MREFTKNRFVVAMIYVIIISAFIFSCAYLIKTFDLFVRFIIKAFIPVIIGLFIAVVFEPL 60

Query: 48  YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
                  K    T  A++  + +  +         Y  + E   LV+ +   +   I   
Sbjct: 61  LKYMEKNKVNR-TISAILILIVLNIILGFMFAEGIYILVNECMRLVASLQNIDYDKIY-- 117

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI---FLDYC 164
                +       +     L  P    I S     TN ++ I   + +   +    L   
Sbjct: 118 ---QALDKLFSNVKNIYSGLPGPIVNFIQSGVDELTNVLNQIATMSLKVIKVIPATLKGV 174

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
               F +++ FFF RD   +   L              I+  V   +        I+AI 
Sbjct: 175 TVWFFSVLSAFFFMRDRHKMRSWLIQNFSVQIYKELSSIAFKVIDSVVDYAKSQIILAIL 234

Query: 225 EGLVLGSAYWLAGVPS-HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
             L       +   P   V   ++  +  +   G+ I          I G+      L +
Sbjct: 235 MFLSGLVGLSIIKAPYFLVVSLLLGLLSIIPIIGSGIILLPWIAGSFIAGDTNFGIKLLI 294

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              I L I +      +V   + +    T   +  GV   G  G  IGP+L+  +  +++
Sbjct: 295 VYLIILGIRE-FASIKIVASQVGISTFTTLVSIYAGVEVFGAWGFVIGPLLVVFLKAVYE 353


>gi|328958096|ref|YP_004375482.1| hypothetical protein CAR_c18090 [Carnobacterium sp. 17-4]
 gi|328674420|gb|AEB30466.1| hypothetical protein CAR_c18090 [Carnobacterium sp. 17-4]
          Length = 166

 Score = 58.3 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 60/144 (41%), Gaps = 2/144 (1%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAP 259
           K+I     K I+  F     ++    ++L   + + G+       +  AI+ M+P  G+ 
Sbjct: 13  KEILSQSVKGIKGYFKAALKLSALTFILLCIGFVIIGIDHWGLKALGIAIVDMVPILGSG 72

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           I     ++     GN   A  L L   I + ++ +   PF+ G  I +  L TF   +  
Sbjct: 73  IIMIPWALVYFFMGNTTMAWQLGLLY-IVINVIRQVAEPFVTGREIGVRPLYTFISTIAC 131

Query: 320 VRTMGLLGLFIGPVLMALIAVIWK 343
           +   G  G  +G ++  +I  +++
Sbjct: 132 ILLFGPFGAILGALIAIVIKAVYE 155


>gi|221233026|ref|YP_002515462.1| hypothetical protein CCNA_00087 [Caulobacter crescentus NA1000]
 gi|220962198|gb|ACL93554.1| conserved membrane spanning protein [Caulobacter crescentus NA1000]
          Length = 369

 Score = 58.3 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/334 (12%), Positives = 105/334 (31%), Gaps = 21/334 (6%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           ++ +     +L +++    P+  AL +             +       LA+   V +   
Sbjct: 17  FLAVIAGAATLKWMQDILTPLALALFLAVMIDSFARVLTDRTPRFPRRLALPTAVVLSLW 76

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHLSHPQS 132
                +++      E  +  S+ V +    I      ++ +  G+  S            
Sbjct: 77  LFGMSVWIVIDNGKEFFDHSSQYVDSLNAIIARFTPTIARLAPGLELS------------ 124

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           +       +K        R+       F  +  S I ++I L F        ++++ +L 
Sbjct: 125 VAPTIGDLVKHLNPQ---RYFGDVAQSFNSFATSAILVLIYLGFILASRRGFARKIVALF 181

Query: 193 EHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
            H        K+ + +   +       T+  +           L G+ +      +  + 
Sbjct: 182 PHHAERETNMKMFQRIRDGVEQYLWIQTVTGLMIAASAFMVMTLVGLDNAFFWAFLIFLA 241

Query: 252 AMIPGGAPIS---FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           A IP            +   +    +++ A  LF+      F+V   + P + G  + + 
Sbjct: 242 AYIPILGGAIGCFLPPIFALIQFPESLWPAVLLFVALQGIFFVVGNVILPRMQGDSLNMD 301

Query: 309 FLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
                  L       G+ G+F+  P+ +A + ++
Sbjct: 302 PTVVLLSLAVWGALWGVPGMFLSTPLTVAAMVIL 335


>gi|312198285|ref|YP_004018346.1| hypothetical protein FraEuI1c_4483 [Frankia sp. EuI1c]
 gi|311229621|gb|ADP82476.1| protein of unknown function UPF0118 [Frankia sp. EuI1c]
          Length = 361

 Score = 58.3 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/327 (14%), Positives = 106/327 (32%), Gaps = 21/327 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +    +   +    P   AL++  T  P+ +    +                + + +V
Sbjct: 26  LVVATAGVRAFRDTLGPAFLALVLVVTVHPLQARLRRR-----------GVPGWIGVVVV 74

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
                     L    +VS   L        P++              T+ L         
Sbjct: 75  MAAIYAILAGLLAALVVSVARLVTLLPDYRPQF-------ENLLHQGTRWLEDLGVQPEQ 127

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           + T +    +  +     R          S++F++  +FF   D  S +++LD +     
Sbjct: 128 ASTAIGRLDLSKLSGVLQRILSGLTSAGSSLVFLVTLVFFLAIDCESFTRRLDVVAG--S 185

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
                   R   +  R      T+  +    +   A     VP  +  G+++ I   IP 
Sbjct: 186 RPLLVAALRDFARNTRRYLAVSTLFGLIVAALDVLALQWLAVPLPLLWGLLSFITNYIPN 245

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G  +     ++  L++G +     + +  ++   +V   ++P +VG  ++L    TF  
Sbjct: 246 IGFVVGLVPPALLGLLEGGVVRMIWVVVVYSVVNMVVQSFIQPKVVGNVVRLSATLTFLS 305

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIW 342
           LV     +G LG  +   +  L   + 
Sbjct: 306 LVFWAFVLGPLGALLAVPMTLLAKALL 332


>gi|308181786|ref|YP_003925914.1| transport protein [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|308047277|gb|ADN99820.1| transport protein [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 360

 Score = 58.3 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 113/343 (32%), Gaps = 23/343 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             ++      R  ++ +I+++LY      + +L   I  F    +  +     +   T +
Sbjct: 8   SQLIRNVRWRRACVLALIVLTLYLASSMMSIILLTFIFTFLVTRLVRAVRRWVKIPPTII 67

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V+      +       + +       V    Q+       +       +    
Sbjct: 68  VLVVYALVILGIYFAVSIYLPQLIKQTFLTFESVYRFYQNPSHDTNQVLTWVTSYFQESD 127

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII---FMIIALFFFYR 179
             K L    S+     T +   G+ F   F   F     D+ + +    F+     +F++
Sbjct: 128 ILKQLKGGISVVFQYITNIGNMGLTFFLSFILSFFFTIEDHQMRVFTKRFLTSTFGWFFQ 187

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D    +++                                +IAI   ++  +   +  +P
Sbjct: 188 DVHFFAKK-------------------FVNSFGVVLEAQFLIAIVNTVITVAFMAILKMP 228

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             ++LG++  I+++IP  G  IS   +S+     G +     + L   +   +    L P
Sbjct: 229 QLISLGLMIFILSLIPVAGVIISVVPLSLIAYSVGGLRYVVYMLLMILVVHALEAYVLNP 288

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             +    +LP   TF  L+   R  G+ GL +G  +   I  I
Sbjct: 289 KFMSSRTELPIFYTFVVLLVSERLFGVWGLIVGVPIFNFILDI 331


>gi|294339618|emb|CAZ87977.1| putative permease [Thiomonas sp. 3As]
          Length = 352

 Score = 58.3 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 106/335 (31%), Gaps = 14/335 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M  T      ++  +I  + L  ++ L     P L  L + +   P+      ++   + 
Sbjct: 1   MLLTPPVKNALIWLVIGLVALWLIWLLGSILMPFLVGLTLAYVLHPLVERLKRRRIPRAL 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A    V+         + LF    L +  +V+++V   +   P+        G    +
Sbjct: 61  GAAAAIIVA---------IGLFIGLFLLLVPVVTEIVPLIREKFPLLLQTIINWGTPLLA 111

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDF---IPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                      S++     +L  +G D+   + R AS  G+  L    ++  + +  F+ 
Sbjct: 112 RFDIHVKFDTASVQQTLSKYLSAHGEDWAGLLLRSASTGGISLLVLLGNLTLIPVVAFYL 171

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             D      ++  L                  ++     G  ++ +           +AG
Sbjct: 172 LLDWTPTLVRIRGLIPPKHRDAVLSFFHDCDVILGQYLRGQLLVMLILAFYYSLGLVIAG 231

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKT 295
               + +G+ T +   +P         +++        + +    + +   I   I    
Sbjct: 232 FNLALPVGIFTGLAVFVPYVGFGLGLLLALLAGALQFLSWYGVISVAIVYGIGQLIESMY 291

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           + P  VG  I L  L   F L+      G  G+ +
Sbjct: 292 ITPKFVGESIGLHPLLVIFILLAFGTLFGFWGILL 326


>gi|227545346|ref|ZP_03975395.1| permease [Lactobacillus reuteri CF48-3A]
 gi|300908574|ref|ZP_07126037.1| protein of hypothetical function UPF0118 [Lactobacillus reuteri
           SD2112]
 gi|227184628|gb|EEI64699.1| permease [Lactobacillus reuteri CF48-3A]
 gi|300893981|gb|EFK87339.1| protein of hypothetical function UPF0118 [Lactobacillus reuteri
           SD2112]
          Length = 370

 Score = 58.3 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/324 (13%), Positives = 108/324 (33%), Gaps = 15/324 (4%)

Query: 7   NPQGIMRWMIMFIILVSLY-FLKGFF-------APVLSALIIGFTSWPI---YSSFISKK 55
               ++  + +  + ++ +  +  F         P+L   I+ +    +   Y    S  
Sbjct: 8   RHISLVLALFILYLAITYWEVVAKFIQTIFSATMPLLIGGIVAYIVNLLLRQYEYLYSHL 67

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIP 114
            +  +       V ++  ++  LL +     L + EL++ V L    H   +  ++    
Sbjct: 68  FKKPSLQKFKRPVGIIMSYLTILLIITIVFALVIPELITCVKLLIANHSHIINHFIDYFE 127

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDF--IPRFASRFGMIFLDYCLSIIFMII 172
                        +       + +      G  F  +   AS    +     ++  F I 
Sbjct: 128 HSSDFKGFINSFDTSKIQWDKIGKYLTSGVGGTFRTVISTASSVFSVATTAIIAFFFSIY 187

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
            L +        ++ L +           K+ ++  +   +  +G    A   G+     
Sbjct: 188 LLIYKEMLQRQFTKLLSTYFSRY-QTQIIKVLKVFDESYSNYIVGQCKDAAILGISCFIG 246

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
             +  +P    +GV+TA  A+IP    I   +V + ++   +   A    ++  +   + 
Sbjct: 247 MTILRMPYASMIGVVTAFGALIPIIGAILGASVGVIIIFAVSPLQAGIFLIFIILLQQLD 306

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGL 316
           ++   P +VG  I LP +  F  +
Sbjct: 307 NRITYPLVVGRSIGLPSVWVFAAV 330


>gi|239617723|ref|YP_002941045.1| protein of unknown function UPF0118 [Kosmotoga olearia TBF 19.5.1]
 gi|239506554|gb|ACR80041.1| protein of unknown function UPF0118 [Kosmotoga olearia TBF 19.5.1]
          Length = 329

 Score = 58.3 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/345 (14%), Positives = 110/345 (31%), Gaps = 28/345 (8%)

Query: 13  RWMIMFIILVSLYFLKGFFAP-----VLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           R  I  +    +YFL  F  P     +  A +I          F  K  +       +  
Sbjct: 3   RNAIWILSYAGIYFLSLFIFPNTSRVLSMAFLIALLLNYPSRFFQKKTLKR------LTV 56

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI---PVPRWLSDIPGGMWASELWT 124
           V V    +V   +LFY     +   V +   +    I   P+   ++D+P  +  S    
Sbjct: 57  VMVSLGLVVLFAYLFYTFPSMISMSVDQFKESFNKLIIDNPLESIMADLPDFIQGS--IN 114

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
               +  SL             + +    +       ++   ++ +I+A  +    G ++
Sbjct: 115 DFFGNFGSLM-----------SNVLVSIVTYISTHIANWITFVVLLIVAAIYILSRGKNV 163

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + +  L          +  +     + +   G  I+A+  G+ +G +  + G+     L
Sbjct: 164 DRIIPKLFPKCNTKKIMEFWKGFLDDLETYIGGQLIVALCIGVFIGISTAIFGIQGSYFL 223

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK-TLRPFLVGG 303
           G++  I  +IP    I      +             + L   +    ++   L P +V  
Sbjct: 224 GLLAGITNLIPFLGVIITAIPMMVFGYTSRGLLGVGIALIILVAANQMEMWFLSPKIVSN 283

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            +K  +      L+      G  G+ +    +  I   W   ++ 
Sbjct: 284 QLKFNWFVVLIALLAFSELFGAFGIILTVPTIVFIRRFWNMFVLK 328


>gi|21228854|ref|NP_634776.1| hypothetical protein MM_2752 [Methanosarcina mazei Go1]
 gi|20907379|gb|AAM32448.1| hypothetical protein MM_2752 [Methanosarcina mazei Go1]
          Length = 362

 Score = 58.3 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/330 (14%), Positives = 107/330 (32%), Gaps = 25/330 (7%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             ++ + +  +     P+  ++       P+    + K+      ++V+  + V     V
Sbjct: 28  AVLLTIGMKAISSILMPIFFSIFSYLIFAPLVRWLMRKRVPGK--ISVVLVILVFIFVFV 85

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
               LF   +L++   +                          + +      +     + 
Sbjct: 86  GTTLLFANSLLQLSGRIPNYE-------------------NQLTSILNSISIYLPEAGVS 126

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            E+ L+ +   F    +       L+   +I  ++I   F   D      ++   GE+  
Sbjct: 127 VESVLR-DIAAFAFNVSGDIISGALNAGSTIALIVITTTFLLLDSAGAPVKMQKEGEN-Q 184

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
           P +  + + +   VI    L      +  G+         G+   V  G++  +   IP 
Sbjct: 185 PVHISQYTELSRTVINYMLLRTE-TNLLGGIGTAILLLAGGIDFAVLWGLLFFLFGYIPY 243

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G  ++     +  L +  +  A  + +   I   +V+  + P L G  +KL     F  
Sbjct: 244 LGFYLAAIPPMLLGLFEYGLIGAVGVLVGITIINALVENVIFPSLAGKGLKLSPTLVFLS 303

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           L      +G  G  I   L  ++ +I + S
Sbjct: 304 LFYWSFVLGAAGALIAVPLTIVVKIILESS 333


>gi|296450372|ref|ZP_06892129.1| possible permease [Clostridium difficile NAP08]
 gi|296878784|ref|ZP_06902785.1| possible permease [Clostridium difficile NAP07]
 gi|296260782|gb|EFH07620.1| possible permease [Clostridium difficile NAP08]
 gi|296430212|gb|EFH16058.1| possible permease [Clostridium difficile NAP07]
          Length = 388

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/295 (13%), Positives = 99/295 (33%), Gaps = 3/295 (1%)

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                ++   + M +  + + F+    +  +  L + + +   +   +   +  +   + 
Sbjct: 87  RGLGILLTYATAMLILYLFMYFVLPQVIESIVGLANDIPMYVNNATKL---IDKLMTDLN 143

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             E +        +  +       T+ I  +            +  L +I  +  L    
Sbjct: 144 LDEQYFNLAVDKWNEFVTYIIKFVTDLIPILGSMLKNVASSIWNIVLGLIVSVYLLIDKE 203

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +      +   ++      A   +++            G  + +   G++      L  +
Sbjct: 204 KFYGLSKKITYAVFTEKQAARILELTHRSNYTFGRFLGGKILDSFIVGILTFVILTLVKM 263

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + VI  I  +IP   P+     S  +++  +   A  L L   I   I    + P
Sbjct: 264 PYTLLISVIIGITNIIPFFGPLFGAIPSTLIVLFVSPIKAFWLLLIILIIQQIDGNIIGP 323

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            ++G  I +      F L+   + +G +G+ IG  + A+I  I K+ +    + K
Sbjct: 324 KILGDSIGISAFWILFSLLVAGKLLGFIGMVIGVPMFAVIYSIIKDIVEGKLDKK 378


>gi|327398674|ref|YP_004339543.1| hypothetical protein Hipma_0513 [Hippea maritima DSM 10411]
 gi|327181303|gb|AEA33484.1| protein of unknown function UPF0118 [Hippea maritima DSM 10411]
          Length = 352

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/288 (11%), Positives = 110/288 (38%), Gaps = 2/288 (0%)

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +S + +  + +    +   + +  L+S++    +    +   + +    +++        
Sbjct: 63  LSGLFVLTIIMGSTVFILTITVPALISQISGIEKQLPTLLEGIKNSINNLYSYMSLKFSN 122

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           S   +  + S        +      +    +  +   ++++ + I  FF           
Sbjct: 123 SSAVNQILSSAVDSVKKYLIDFAVNSLTGLIKGVSGLVALLLIPIISFFMIIYRQKYKLV 182

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + S+   +    +  + + +  VI S  +G+ I+ +    +  +  ++ GV   +  G++
Sbjct: 183 IKSIILTVLGEDYLSVFQDIHNVIISYIVGLVILMVVVSALGIAGLYIVGVDYALLFGIL 242

Query: 248 TAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
             ++ +IP    I      + + LL+  ++  +  +        FI    + P++    +
Sbjct: 243 GGVLYIIPYLGAIVSFIPPILVALLVHHSLIMSVEVLTVLLFIHFISGNIIAPYIYSRQL 302

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +L  L     ++   + +G+ G+ +   L+ +I V +++ +  + + +
Sbjct: 303 ELDPLAVLLSILFFGKLLGVWGVILSVPLLGIIVVSYEKLVPILIKRR 350


>gi|307725716|ref|YP_003908929.1| hypothetical protein BC1003_3698 [Burkholderia sp. CCGE1003]
 gi|307586241|gb|ADN59638.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1003]
          Length = 690

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 56/163 (34%), Gaps = 7/163 (4%)

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +  +   L           +     + +   F+    +    G+ +G+  +  GVPS 
Sbjct: 212 DDLRDRAIRLFGSRDLHRTTMVMDEAARRLSRYFVSQLGLNAALGVAIGAGLFFIGVPSP 271

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD----KTLR 297
           +  G++ A++ ++P      + A  +   +   +     + +W       V+    + + 
Sbjct: 272 ILWGILAALLRLVPYVG--IWIAGGLATALAAAVSPGWDMAVWCIALFVTVELLVGQVVE 329

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIA 339
           P L G    L         +      G +GL +  P+ + L+ 
Sbjct: 330 PLLYGRSTGLSPFSVVVAAIFWSWIWGPIGLILSTPLTLCLLV 372


>gi|161505877|ref|YP_001572989.1| hypothetical protein SARI_04054 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867224|gb|ABX23847.1| hypothetical protein SARI_04054 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 349

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/321 (14%), Positives = 113/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +       +A   V
Sbjct: 14  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGMKRP-----LAITIV 68

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L       + E ++ +   ++                    L  + L   
Sbjct: 69  VVVMLIVLTALVGVLAASLNEFIAMLPKYSKELT--------------RRVLHLQELMPF 114

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    D I  F +           SI+ +++ + F   +   +  +L  
Sbjct: 115 LNLHMSPERMLRGMDSDKIMLFTTTLMTGVSGAMASIVLLVMTVVFMLFEVRHVPYKL-R 173

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G ++     L  +   +  GV+  +
Sbjct: 174 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGAIIWLGLALMDIQFALMWGVLAFL 232

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  G+ IS     I  L+    +    +     +   ++   + P ++G  + +  
Sbjct: 233 LNYVPNIGSVISAVPPMIQALLFNGFYECVLVGALFLVVHMVIGNIMEPRMMGHRLGMST 292

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           L  F  L+     +G +G+ +
Sbjct: 293 LVVFLSLLVWGWLLGPVGMLL 313


>gi|258513479|ref|YP_003189701.1| sporulation integral membrane protein YtvI [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777184|gb|ACV61078.1| sporulation integral membrane protein YtvI [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 356

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/318 (14%), Positives = 107/318 (33%), Gaps = 5/318 (1%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P L   II  T  P+             +  +    +++ L  +  ++L Y    E+  L
Sbjct: 38  PFLVGTIISLTLEPLIVKLQRNSVPR-IYSVLFVVFAIVLLTGLLTMWLVYGLTAEIHTL 96

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
           +++   A    + + +         + + L  + + + +        ++       I + 
Sbjct: 97  INE-YPAIVKALQLKQQFLLERMSHYQNILPEEFIYNLKEYSNKVNDYIVGMISKTI-QV 154

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
                    D  L  + +++ +FFF  +     ++L             +I       I 
Sbjct: 155 VFVLLKTVPDKLLIYVIVVMYIFFFSMEWPKYKERLKCSISEDLWKKTSQIVNDTKIGIV 214

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI 271
                  IIA+  GL++     L      + + ++    + IP  G  I     +IY   
Sbjct: 215 GYLKAQLIIALISGLIILIGLLLIKSQFVLIITIMCIFASFIPFLGVNIVLVPWAIYSAF 274

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
                 A  L     + + +V   + P ++G  + +  +     L  G   +G  GL +G
Sbjct: 275 FCLESFALELIAI-MVTVSVVRHIIEPKILGDKLGIQPIGILVALFIGFELVGFWGLILG 333

Query: 332 PVLMALIAVIWKESIMAI 349
           P+ + +   + K  ++  
Sbjct: 334 PLGLIVFNSMVKSGLLGS 351


>gi|254557702|ref|YP_003064119.1| transport protein [Lactobacillus plantarum JDM1]
 gi|254046629|gb|ACT63422.1| transport protein [Lactobacillus plantarum JDM1]
          Length = 360

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 113/343 (32%), Gaps = 23/343 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             ++      R  ++ +I+++LY      + +L   I  F    +  +     +   T +
Sbjct: 8   SQLIRNVRWRRACVLALIVLTLYLASSMMSIILLTFIFTFLVTRLVRAVRRWVKIPPTII 67

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V+      +       + +       V    Q+       +       +    
Sbjct: 68  VLVVYALVILGIYFAVSIYLPQLIKQTFLTFESVYRFYQNPSHDTNQVLTWVTSYFQESD 127

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII---FMIIALFFFYR 179
             K L    S+     T +   G+ F   F   F     D+ + +    F+     +F++
Sbjct: 128 ILKQLKGGISVVFQYITNIGNMGLTFFLSFILSFFFTIEDHQMRVFTKRFLTSTFGWFFQ 187

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D    +++                                +IAI   ++  +   +  +P
Sbjct: 188 DVHFFAKK-------------------FVNSFGVVLEAQFLIAIVNTVITVAFMAILKMP 228

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             ++LG++  I+++IP  G  IS   +S+     G +     + L   +   +    L P
Sbjct: 229 QLISLGLMIFILSLIPVAGVIISVVPLSLIAYSVGGLRYVVYMLLMILVVHALEAYVLNP 288

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             +    +LP   TF  L+   R  G+ GL +G  +   I  I
Sbjct: 289 KFMSSRTELPIFYTFVVLLVSERLFGVWGLIVGVPIFNFILDI 331


>gi|300769497|ref|ZP_07079383.1| membrane protein [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|300492912|gb|EFK28094.1| membrane protein [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
          Length = 357

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 113/343 (32%), Gaps = 23/343 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             ++      R  ++ +I+++LY      + +L   I  F    +  +     +   T +
Sbjct: 5   SQLIRNVRWRRACVLALIVLTLYLASSMMSIILLTFIFTFLVTRLVRAVRRWVKIPPTII 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V+      +       + +       V    Q+       +       +    
Sbjct: 65  VLVVYALVILGIYFAVSIYLPQLIKQTFLTFESVYRFYQNPSHDTNQVLTWVTSYFQESD 124

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII---FMIIALFFFYR 179
             K L    S+     T +   G+ F   F   F     D+ + +    F+     +F++
Sbjct: 125 ILKQLKGGISVVFQYITNIGNMGLTFFLSFILSFFFTIEDHQMRVFTKRFLTSTFGWFFQ 184

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D    +++                                +IAI   ++  +   +  +P
Sbjct: 185 DVHFFAKK-------------------FVNSFGVVLEAQFLIAIVNTVITVAFMAILKMP 225

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             ++LG++  I+++IP  G  IS   +S+     G +     + L   +   +    L P
Sbjct: 226 QLISLGLMIFILSLIPVAGVIISVVPLSLIAYSVGGLRYVVYMLLMILVVHALEAYVLNP 285

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             +    +LP   TF  L+   R  G+ GL +G  +   I  I
Sbjct: 286 KFMSSRTELPIFYTFVVLLVSERLFGVWGLIVGVPIFNFILDI 328


>gi|257866205|ref|ZP_05645858.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257800139|gb|EEV29191.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
          Length = 309

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/309 (11%), Positives = 105/309 (33%), Gaps = 11/309 (3%)

Query: 45  WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
            P ++    + +   +       + ++    + +  +      EM   ++++        
Sbjct: 1   MPFFNWVKRRTK-KKSIALYATLLLIVFAAYLIIQVIGPALAYEMGRFINQI-------- 51

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
             P  ++ +   +  S L         S+ I   +      I       +    I     
Sbjct: 52  --PVIINLVIDNINHSYLEELFGPFIDSIDISQASNFALQFITGATNRLTSLISIVSHSA 109

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
           + +  + + L + ++DG  +   L +     +    +++     +   +   G  ++   
Sbjct: 110 IVLFTIPLLLVYMFKDGEKVPDFLANKTPKKYQGLMRQLCSDFHQAASAYIGGKLLVCSY 169

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLW 284
             +     + L G+ + + LG+I  ++ +IP   P    A +    +  +I  A  L + 
Sbjct: 170 VAVSSYLIFSLLGLQNALLLGLICGVLDIIPYFGPFIGAAPAFLFALSLDIRTAILLVVG 229

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             I        + P ++   + +  +   F L+     +G +G+ +   + ++I  +   
Sbjct: 230 ITIIQLGESYLVSPLVMNKVLHIHPIIAVFLLLIAGNLLGFVGMIVALPVYSIIMAMSGT 289

Query: 345 SIMAIKENK 353
            +   +E K
Sbjct: 290 LLRFFQERK 298


>gi|298291852|ref|YP_003693791.1| hypothetical protein Snov_1869 [Starkeya novella DSM 506]
 gi|296928363|gb|ADH89172.1| protein of unknown function UPF0118 [Starkeya novella DSM 506]
          Length = 376

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/309 (13%), Positives = 94/309 (30%), Gaps = 16/309 (5%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           +  +    P+++A+IIG    P       +         V   ++ + +    +  L+  
Sbjct: 56  FVARAVLIPIVAAVIIGSVIGPAIEGLAKR--------GVPTALASLLIVAGLIAGLYGA 107

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            +     +   +  A + G  +    + +   +       + +     +          N
Sbjct: 108 AVALAGPVADWMGRAPEVGAILQERFAALKPSLQTVISLIESIQSIGRVAEPPMAVEIAN 167

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL-GEHLFPAYWKKI 203
                 R       +        I  I +L FF      I +++  + G         ++
Sbjct: 168 -----SRMLESMVTLVTPVIGEFILFIGSLLFFLAGRVQIKRRVVQVMGPRSARLTALRV 222

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF- 262
            R +   + +  +  T I IG GL      W  G+P+    G    ++  +P   P    
Sbjct: 223 FREIEDRLGAYLVTATFINIGLGLATALMTWALGLPNPPLWGAAAGVLNYVPYVGPAVMT 282

Query: 263 -TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
                  ++    I  A     +  +   I  + L P ++G  + L     F  +     
Sbjct: 283 LILAVAGIVTFPGILEAMLPAAFFLMITSIEGQFLTPLIIGRRVALNPFAVFLSMAFWTW 342

Query: 322 TMGLLGLFI 330
             G  G F+
Sbjct: 343 LWGPAGTFL 351


>gi|254524493|ref|ZP_05136548.1| transport protein [Stenotrophomonas sp. SKA14]
 gi|219722084|gb|EED40609.1| transport protein [Stenotrophomonas sp. SKA14]
          Length = 340

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/333 (13%), Positives = 105/333 (31%), Gaps = 15/333 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +    +  +L+  +    PVL A+       PI           +        +  + +
Sbjct: 5   VLATLAVGYTLWAAQDIILPVLLAMFFALVGNPILRLLQKLWIPRA--------LGALLV 56

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               L       +  +   +     A Q    V R + D+   +  +    ++ +     
Sbjct: 57  LGAGLGVTGALAVQLIGPAMEWAQEAPQQLRKVARQVQDLTKPVQQANQAAENFARVAGG 116

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
               +  +    +D   R  +R   +       +  +++ LFF           +     
Sbjct: 117 DSNRKVQVIRTQLDDPYRMLTRAPRLAASV---LAVVLLTLFFMIYGQNLQRAAIALFPN 173

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGVITAIM 251
                +   I R + + +    L +++I    GLV      L G+     +  G + A++
Sbjct: 174 RQQQRFTSDILRSIEREVSRYVLTISVINTLVGLVFAGVLMLFGISLQDALLWGTVAALL 233

Query: 252 AMIPGGAPISFTAVSIYLLIK--GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
              P   P+   A+ + +      +   A            +  + + P ++G  +KL  
Sbjct: 234 NFAPYVGPLIGVALMLLMGFVEFSDPLQALLPAAAYLALHTVEGQVVTPIVLGRRMKLSP 293

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L     L+      G++GL +   L+  I ++ 
Sbjct: 294 LVLILALMVFGWAWGMIGLLLAVPLLVCIKLVL 326


>gi|81300150|ref|YP_400358.1| hypothetical protein Synpcc7942_1341 [Synechococcus elongatus PCC
           7942]
 gi|81169031|gb|ABB57371.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 361

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 122/307 (39%), Gaps = 17/307 (5%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           VL A ++ F    +   ++ ++    +   +      + L I    +L    ++E+  L 
Sbjct: 42  VLVAALMAFILD-LPVRWLVQRGLPRSLALLTVLGGGIALIIALATWLLPPLLVEVNVLT 100

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK--TNGIDFIPR 151
                       +P W       +   E WT   + P     L +  +   T+ ++ +  
Sbjct: 101 R----------ALPHWYDTAKLEVLQFEAWTLSFNLPLDWVSLFQRVVTEVTDLVETLST 150

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                 + F D  L+ +  ++   F    G  +S  +    + L   +  +++  + +  
Sbjct: 151 QLLSLTLEFFDGALNFLITVVLTLFLLMYGEEVSGTV---LQRLPAIWRDRLAIGLRQKF 207

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           ++   G  IIA    ++L  A  L  +P  + LG++  + ++IP    +   ++   LL 
Sbjct: 208 QAFLGGELIIASLYSVLLLVALSLLKIPFALLLGLVLGLGSLIPFLDILLVISLCGVLLF 267

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
           + +   A  LF+   +   I D  + P L+G  I L  +     ++ G++  G+LGLF+ 
Sbjct: 268 Q-DPAIAAKLFITVFLLGQINDNLIEPRLMGQIIGLNPVWILLSVLLGLKIFGILGLFVA 326

Query: 332 PVLMALI 338
             L +L+
Sbjct: 327 VPLASLM 333


>gi|317123626|ref|YP_004097738.1| hypothetical protein Intca_0463 [Intrasporangium calvum DSM 43043]
 gi|315587714|gb|ADU47011.1| protein of unknown function UPF0118 [Intrasporangium calvum DSM
           43043]
          Length = 370

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 106/302 (35%), Gaps = 18/302 (5%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           P+ +    +        +V  T+      +  L +L      +  +       A +    
Sbjct: 64  PLVTWLNRR--GLPRAPSVWVTLLAAFAVLGGLGWLVARAAQD--QWGELAAGAGEGVKE 119

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           + R+L++ P G+   E+        + L       + T     +   A  F  + L Y L
Sbjct: 120 LERFLAESPLGLDRREIEDLWAQAAEFLAGPQGQGVITGATLVVEILAGIFLGLVLLYFL 179

Query: 166 SIIFMIIALFFFYRDGFSISQQLDS-LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
                        +DG  I   L S L        + +++      +     G  +IA+ 
Sbjct: 180 L------------KDGDRIWTFLRSELLPDRHSPRFDRVAAEAVSTLGGYVRGTALIALV 227

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLW 284
           E  ++G+A  + GVP  + + ++  I A IP     +  A++  + +  N   A  + + 
Sbjct: 228 EATLIGAAVAILGVPLALPIAIVVFIGAFIPLLGATAAGALAALIALVSNGVVAALVLVA 287

Query: 285 GAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             I +  ++   L P+++G  + L  L     L  G  + G++G  +     A+      
Sbjct: 288 VVIVVNQLEGDVLSPYVLGKAVSLHPLAVLLALSAGTISAGIIGAILAVPFAAVAWSAIT 347

Query: 344 ES 345
             
Sbjct: 348 TW 349


>gi|39935838|ref|NP_948114.1| hypothetical protein RPA2771 [Rhodopseudomonas palustris CGA009]
 gi|39649692|emb|CAE28213.1| possible transport protein/permease [Rhodopseudomonas palustris
           CGA009]
          Length = 388

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/334 (13%), Positives = 94/334 (28%), Gaps = 9/334 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
              +L + +   G    + + ++ G     +                 +  + +  L I 
Sbjct: 34  FAALLYAAWQFAGTLFLIFAGVLFGVFLNALTELTGKLVGGPHGLRLALICLVLTGLTIG 93

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW------LSDIPGGMWASELWTKHLSHP 130
                      + K L   +     +   +           ++     A+   T     P
Sbjct: 94  VAFLGGNTISQQAKALSGTIKTQIVNVKALLERNGVDTGFLELNPTPSAAHPETTTPVQP 153

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           ++L    E     +G   I     +  +  +    +   ++     F          L  
Sbjct: 154 RNLPSAGEI---ASGGGAIVSQTLKLILGTIGAVGNFFIVMFLGLAFAAQPSVYRNGLVR 210

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +    + A    I     ++++   L   I  +    V  +   L G+P    LG+   +
Sbjct: 211 MVPRRYRAQADVIVTDTGEMLKRWLLAQLITMMAVFAVTATGLSLIGIPGAFILGIQAGL 270

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +A IP    I    + +   I          F+       +    L P +    I +P  
Sbjct: 271 LAFIPTVGAILGGLIIVLAAIGSGWIAVVSAFVLFLGVHALESYILTPLIQRQAIDIPPA 330

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             F   +      GL GL +   LMA+  V+   
Sbjct: 331 TLFAMQILLGIVFGLWGLALALPLMAIGRVVLDH 364


>gi|88703905|ref|ZP_01101620.1| Protein of unknown function, UPF0118 [Congregibacter litoralis
           KT71]
 gi|88701732|gb|EAQ98836.1| Protein of unknown function, UPF0118 [Congregibacter litoralis
           KT71]
          Length = 395

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 94/279 (33%), Gaps = 6/279 (2%)

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++   +  +  + L        +     +  A      + R  S++ G +         +
Sbjct: 106 LTAALIVSIITVLLVSGLYSLGEPAKEWLKEAPNALRALQRQASEVRGPLEDMRETRAVI 165

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +   +     +T +  N    + +           Y ++ + M   LFF    G  + + 
Sbjct: 166 TDLSNGSAKGKTEIFVNSESVVEQSVMMKTSEGFAYSVATLVM---LFFILGWGDRLFRN 222

Query: 188 LDSLGEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
             +L           ++++ +   I    L +T+I    G  + +  +  G+P+ V  GV
Sbjct: 223 AIALLPGFAERRGAVQVAQAIESAIGRYLLMITLINSCLGFAVAALSYFIGLPNPVLWGV 282

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF--LWGAIELFIVDKTLRPFLVGGP 304
           + A++  +P       T V + + +         L   L   +        + P+ VG  
Sbjct: 283 VAALLNYMPYIGAAITTLVLLAVSLISQPLEFPILTAPLAFLVLTTFEGYIVTPYAVGRS 342

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           + L  L  FF L+      G +G  +   ++    V  +
Sbjct: 343 LTLNPLIVFFSLLVCFFLWGGIGALLAVPILVSFKVALE 381


>gi|255656194|ref|ZP_05401603.1| hypothetical protein CdifQCD-2_10974 [Clostridium difficile
           QCD-23m63]
          Length = 388

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/295 (13%), Positives = 99/295 (33%), Gaps = 3/295 (1%)

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                ++   + M +  + + F+    +  +  L + + +   +   +   +  +   + 
Sbjct: 87  RGLGILLTYATAMLILYLFMYFVLPQVIESIVGLANDIPMYVNNATKL---IDKLMTDLN 143

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             E +        +  +       T+ I  +            +  L +I  +  L    
Sbjct: 144 LDEQYFNLAVDKWNEFVTYIIKFVTDLIPILGSMLKNVASSIWNIVLGLIVSVYLLIDKE 203

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +      +   ++      A   +++            G  + +   G++      L  +
Sbjct: 204 KFYGLSKKITYAVFTEKQAARILELTHRSNYTFGRFLGGKILDSFIIGILTFVILTLVKM 263

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + VI  I  +IP   P+     S  +++  +   A  L L   I   I    + P
Sbjct: 264 PYTLLISVIIGITNIIPFFGPLFGAIPSTLIVLFVSPIKAFWLLLIILIIQQIDGNIIGP 323

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            ++G  I +      F L+   + +G +G+ IG  + A+I  I K+ +    + K
Sbjct: 324 KILGDSIGISAFWILFSLLVAGKLLGFIGMVIGVPMFAVIYSIIKDIVEGKLDKK 378


>gi|311747691|ref|ZP_07721476.1| hypothetical protein ALPR1_15209 [Algoriphagus sp. PR1]
 gi|126575679|gb|EAZ79989.1| hypothetical protein ALPR1_15209 [Algoriphagus sp. PR1]
          Length = 361

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 110/331 (33%), Gaps = 14/331 (4%)

Query: 34  VLSALIIGFTSWPIYSSF--ISKKEES-STFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           ++ +LII     P+ +         +    +LA+I + S +    V L FLF+  +    
Sbjct: 29  LVISLIIAALLRPMTNQLNDFHLLGQHIPRWLAIIISYSAIVFIFVLLSFLFFPLINNQV 88

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            ++S++ L   + I     +       +                 L    + T       
Sbjct: 89  LILSELDL---NTIYEEINIPIQKVENFLFRYQLLESEPGYLFNQLKTQIIDTIKGIDFG 145

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
            F S          + ++ ++   FF   +   + + L +L  + +          V K+
Sbjct: 146 AFISNILNTTSSVFIGLMAILFITFFLLLENGLLRRNLLNLIPNPYFELSVATFTKVEKL 205

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI------SFTA 264
           + +   G+ +  +    +      + GV   + + +  A+  +IP   P+          
Sbjct: 206 LSNYLSGLLLQMLAIFSIASFGLTIVGVDYALTIALFAAVANLIPYAGPLLGATFGIIVG 265

Query: 265 VSIYLLIKGNIFNATCLFLWGAI-ELFIVDK-TLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
           VS     +    N   L +      + ++D   L+P +    +K   L  F  +  G + 
Sbjct: 266 VSTGNYEQNQELNYLLLKILSVFGVVQVMDNIFLQPMIFSKSVKAHPLEIFVVIFAGAKI 325

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            G+ G+     +  +  V + E     K  +
Sbjct: 326 AGITGMIFAIPVYTIFRVSFMEFYQGYKSYR 356


>gi|240948564|ref|ZP_04752937.1| membrane protein [Actinobacillus minor NM305]
 gi|240297072|gb|EER47643.1| membrane protein [Actinobacillus minor NM305]
          Length = 354

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 60/345 (17%), Positives = 122/345 (35%), Gaps = 26/345 (7%)

Query: 6   LNPQGIMRWMI----MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    + R+ +    + IIL  +          L +L I     P+      +   +   
Sbjct: 1   MQTSSLTRFFLATAAVVIILAGVKLAGEIVIQFLLSLFIAIICSPV-----IRFMTNRKI 55

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +A   +  LFI+   FL       ++E  + + L  +        L          +
Sbjct: 56  PLGLAVAFLFVLFIIAFFFLASMINNTIREFTTSIPLYKETLAVKLNTLEGF------IQ 109

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            W   +S P+       + L       + R  SR  + F D   +I  +++ + F   + 
Sbjct: 110 KWNIPISLPEM------SILDNFDPSVVMRLVSRLLLSFSDVVSNIFMLLLVVVFMLFES 163

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM---TIIAIGEGLVLGSAYWLAGV 238
            +I  +L     H      K+    + +V+ S    +   T+++   G  +       GV
Sbjct: 164 PTIKHKLAIAFSHNNLKSIKQEEDHINRVVESIIRYLGVKTVVSALTGFCIWLLLESFGV 223

Query: 239 PSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
              V   V+  ++  IP  G+ ++   + +  LI  +   A  + +       IV   L 
Sbjct: 224 QYAVLWAVLAFLLNYIPNIGSILAGIPIVLQALILNDFPIAAGVTIGVVAINMIVGNILE 283

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
           P ++G  + L  L     L+     +G +G+ +  P+ MAL   +
Sbjct: 284 PKMMGKTLGLSTLVVTLSLLFWGWLLGTVGMLLSVPLTMALKIAL 328


>gi|28379561|ref|NP_786453.1| transport protein [Lactobacillus plantarum WCFS1]
 gi|28272401|emb|CAD65324.1| transport protein [Lactobacillus plantarum WCFS1]
          Length = 360

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 113/343 (32%), Gaps = 23/343 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             ++      R  ++ +I+++LY      + +L   I  F    +  +     +   T +
Sbjct: 8   SQLIRNVRWRRACVLALIVLTLYLASSMMSIILLTFIFTFLVTRLVRAVRRWVKIPPTII 67

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V+      +       + +       V    Q+       +       +    
Sbjct: 68  VLVVYALVILGIYFAVSIYLPQLIKQTFLTFESVYRFYQNPSHDTNQVLTWVTSYFQESD 127

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII---FMIIALFFFYR 179
             K L    S+     T +   G+ F   F   F     D+ + +    F+     +F++
Sbjct: 128 ILKQLKGGISVVFQYITNIGNMGLTFFLSFILSFFFTIEDHQMRVFTKRFLTSTFGWFFQ 187

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D    +++                                +IAI   ++  +   +  +P
Sbjct: 188 DVHFFAKK-------------------FVNSFGVVLEAQFLIAIVNTVITVTFMAILKMP 228

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             ++LG++  I+++IP  G  IS   +S+     G +     + L   +   +    L P
Sbjct: 229 QLISLGLMIFILSLIPVAGVIISVVPLSLIAYSVGGLRYVVYMLLMILVVHALEAYVLNP 288

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             +    +LP   TF  L+   R  G+ GL +G  +   I  I
Sbjct: 289 KFMSSRTELPIFYTFVVLLVSERLFGVWGLIVGVPIFNFILDI 331


>gi|296102588|ref|YP_003612734.1| putative AI-2 transport protein TqsA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295057047|gb|ADF61785.1| putative AI-2 transport protein TqsA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 345

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/328 (13%), Positives = 110/328 (33%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      + 
Sbjct: 7   TLNGLKIVIMLGMLVIILTGVRFAADIIVPFILALFIAVILNPLVQRMVRIRIPRVLAIT 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ ++ ++ + ++ + +L        + L           + +  WL             
Sbjct: 67  LLISIIIIAMVLL-VAYLGTSLNELARTLPKYRSSLVIPLLQIEPWLQR----------- 114

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                    +++  E  LK    +      +       +   SI  + + + F   +   
Sbjct: 115 -------AGIEVSVEELLKYIDPNAAMTLVTSLLAQLSNAMTSIFLLFLTVVFMLLEVPQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +L  +     P       +     +    +  T I++  G V+        V     
Sbjct: 168 LPAKLQHIMVR--PVEGMGAIQRALDSVSRYLVLKTAISLVTGCVVWGMLVALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++     + +L+   +++A  L     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPVLQVLVFSGLYDALILLAGYLVINLVFGNILEPRMMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|254511550|ref|ZP_05123617.1| transporter, permease [Rhodobacteraceae bacterium KLH11]
 gi|221535261|gb|EEE38249.1| transporter, permease [Rhodobacteraceae bacterium KLH11]
          Length = 362

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/333 (12%), Positives = 96/333 (28%), Gaps = 23/333 (6%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            ++  ++++ LY    F  P+  AL++      +    I+          +     V+  
Sbjct: 23  VIVATLVVLGLYAGAAFLIPLTMALLVNVLIMALSDRVIALTRAPIWLANLAGVTVVLAG 82

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             + +  L                  N +       ++ I G +               +
Sbjct: 83  LFMIMYILGSQAT-------QFARSINTYESQFDGAVNRITGLV------------GNDV 123

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                  L +  + ++ R         L+     +  +   F          +   + G 
Sbjct: 124 TSFIRDNLISIDMSYVARLLLGSATSLLNQF--FLISLYVAFLMAERLAFRHKIQLAAGN 181

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
               A    +   +   ++      T I++    +  S + + G+       V+T  +  
Sbjct: 182 PQLGADLASVLDAISSSLQRYVGVKTFISLITATISYSVFRVLGLEYAETWAVLTFALNF 241

Query: 254 IPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           IP    I        I L+    I     + L      F++   L P ++G  + +    
Sbjct: 242 IPSIGSIIAVIFPAMIALVQFDTIGPFLVIVLGCGTLQFVIGNFLDPAMLGRSLNMSTFL 301

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
               L       GL+G F+   L   I +I+  
Sbjct: 302 VILALTFWTTVWGLIGAFLSVPLTVCILIIFSH 334


>gi|85716929|ref|ZP_01047893.1| hypothetical protein NB311A_09266 [Nitrobacter sp. Nb-311A]
 gi|85696208|gb|EAQ34102.1| hypothetical protein NB311A_09266 [Nitrobacter sp. Nb-311A]
          Length = 355

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/318 (12%), Positives = 100/318 (31%), Gaps = 58/318 (18%)

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
           S  +    ++++V  + +  L         ++ ++ +++  A + G              
Sbjct: 73  SRGWALTASSLTVAAVIVAILSLFGTQLAGQISDVFARLPDAIEAG-------------- 118

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                  + L    + + + E      G   + R A   G   +     ++ +I+   + 
Sbjct: 119 ------GERLGIHNAFEQIKEAVSGEGGGQLLSRVA-NLGYTAIGVATDLVLIIVIAVYL 171

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             D       +  L              +    +R  FLG  +  +  G++ G A+W  G
Sbjct: 172 ATDPRLYRAGMIKLFPPEQHERVGDALDVTASALRLWFLGQLVSMVLVGVLSGVAFWWIG 231

Query: 238 VPSHVALGVITAIMAMIPGGAPIS------------------FTAVSIYLLIKGNIFNAT 279
           +PS + L ++      +P   P+                   +T V++  + +       
Sbjct: 232 LPSPLGLALVAGATNFVPMIGPLVGAIPALLFAVTQDFGTVLWTMVAVLAIQQ------- 284

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALI 338
                           + P +    + +P      G+       G+ G+ +  P+ +A++
Sbjct: 285 -----------FEGNLITPMVQRRAVDIPPAVMLLGIAVFGLLGGIAGVILAVPLTVAIM 333

Query: 339 AVIWKESIMAIKENKEKI 356
            ++ K  I      K  I
Sbjct: 334 VLVQKLWIRETLGEKTTI 351


>gi|193782699|ref|NP_436165.2| hypothetical protein SMa1676 [Sinorhizobium meliloti 1021]
 gi|307308363|ref|ZP_07588068.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
 gi|307321177|ref|ZP_07600580.1| protein of unknown function UPF0118 [Sinorhizobium meliloti AK83]
 gi|193073155|gb|AAK65577.2| conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|306893168|gb|EFN23951.1| protein of unknown function UPF0118 [Sinorhizobium meliloti AK83]
 gi|306901164|gb|EFN31771.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
          Length = 352

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/311 (15%), Positives = 105/311 (33%), Gaps = 24/311 (7%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           FAPV  AL I    WP      +          +I+ + V+   +     + +      +
Sbjct: 32  FAPVAFALFIIALVWPTQCRLQAMLP--RYLALIISFLLVVLAIVAFGGLIAWAFGHVGR 89

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            +++      Q    V  WL +   G+    LW+++                  G+ ++ 
Sbjct: 90  WIIADAARFQQLYDQVRLWLEE--HGVAVGVLWSENF-----------------GVGWVL 130

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                            +  ++ +     +     +++++L      A   + S+     
Sbjct: 131 HTVQAVSGRLNSTFSFWLIALVYVLLGLMEMDDFGRRIEALRNRTASALLLRGSQQTAMK 190

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS--FTAVSIY 268
           IR   +  T++++  GL++       G+      G I   +  IP   P+          
Sbjct: 191 IRRYMMIRTVMSVVTGLLVWIFTRAVGLSLAEEWGFIAFALNYIPFLGPLLATLFPTLFA 250

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L+  G +     +F    +  F+V   + P   G  + +  +   F +       G+ G 
Sbjct: 251 LIQFGTVETVLIVFTGLNLIQFVVSSYIEPRASGSALSMSPVMVLFSVFLWGYLWGIFGA 310

Query: 329 FIG-PVLMALI 338
           FIG P+ +AL+
Sbjct: 311 FIGVPITIALL 321


>gi|16762722|ref|NP_458339.1| hypothetical protein STY4229 [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29144209|ref|NP_807551.1| hypothetical protein t3940 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56415481|ref|YP_152556.1| hypothetical protein SPA3433 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|167549199|ref|ZP_02342958.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|168232730|ref|ZP_02657788.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168235177|ref|ZP_02660235.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168241735|ref|ZP_02666667.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194449282|ref|YP_002047607.1| hypothetical protein SeHA_C3894 [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194468597|ref|ZP_03074581.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194738241|ref|YP_002116517.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197248277|ref|YP_002148505.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197262488|ref|ZP_03162562.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197364409|ref|YP_002144046.1| hypothetical protein SSPA3205 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|200387428|ref|ZP_03214040.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204928771|ref|ZP_03219970.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|213053192|ref|ZP_03346070.1| hypothetical protein Salmoneentericaenterica_09837 [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213426822|ref|ZP_03359572.1| hypothetical protein SentesTyphi_15170 [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213582950|ref|ZP_03364776.1| hypothetical protein SentesTyph_17763 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213648251|ref|ZP_03378304.1| hypothetical protein SentesTy_13729 [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213859386|ref|ZP_03385090.1| hypothetical protein SentesT_23780 [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|238910417|ref|ZP_04654254.1| hypothetical protein SentesTe_04669 [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289824350|ref|ZP_06543943.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25325143|pir||AD0990 probable membrane protein STY4229 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16505028|emb|CAD08048.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29139846|gb|AAO71411.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56129738|gb|AAV79244.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|194407586|gb|ACF67805.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194454961|gb|EDX43800.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194713743|gb|ACF92964.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197095886|emb|CAR61461.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197211980|gb|ACH49377.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197240743|gb|EDY23363.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197291605|gb|EDY30957.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|199604526|gb|EDZ03071.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204322204|gb|EDZ07402.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205325703|gb|EDZ13542.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205333168|gb|EDZ19932.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205338746|gb|EDZ25510.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|322614052|gb|EFY10988.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617944|gb|EFY14837.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625442|gb|EFY22268.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629907|gb|EFY26680.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322632204|gb|EFY28955.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322636445|gb|EFY33152.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322643106|gb|EFY39680.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644699|gb|EFY41235.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651279|gb|EFY47663.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322652808|gb|EFY49147.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322659110|gb|EFY55362.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663188|gb|EFY59392.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668675|gb|EFY64828.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674521|gb|EFY70614.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678273|gb|EFY74334.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682470|gb|EFY78491.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322684183|gb|EFY80189.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323192261|gb|EFZ77493.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196312|gb|EFZ81464.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201886|gb|EFZ86949.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206429|gb|EFZ91390.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212022|gb|EFZ96849.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216927|gb|EGA01650.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222327|gb|EGA06710.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224341|gb|EGA08630.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323228269|gb|EGA12400.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233463|gb|EGA17556.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237075|gb|EGA21142.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323243710|gb|EGA27726.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323246048|gb|EGA30035.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250824|gb|EGA34702.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323257680|gb|EGA41366.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323261889|gb|EGA45456.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267719|gb|EGA51201.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323268599|gb|EGA52066.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 349

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/321 (14%), Positives = 113/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + IIL  ++        +L AL       P+ + FI +  +       +A   V
Sbjct: 14  LLKLASLVIILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVKRP-----LAITIV 68

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L       + E ++ +   ++                    L  + L   
Sbjct: 69  VVVMLIVLTALVGVLAASLNEFIAMLPKYSKELT--------------RKVLHLQELMPF 114

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    D I  F +           SI+ +++ + F   +   +  +L  
Sbjct: 115 LNLHMSPERMLRGMDSDKIMLFTTTLMTGVSGAMASIVLLVMTVVFMLFEVRHVPYKL-R 173

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G ++     L  +   +  GV+  +
Sbjct: 174 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGAIIWLGLALMDIQFALMWGVLAFL 232

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  G+ IS     I  L+    +    +     +   ++   + P ++G  + +  
Sbjct: 233 LNYVPNIGSVISAVPPMIQALLFNGFYECVLVGALFLVVHMVIGNIMEPRMMGHRLGMST 292

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           L  F  L+     +G +G+ +
Sbjct: 293 LVVFLSLLVWGWLLGPVGMLL 313


>gi|295681027|ref|YP_003609601.1| hypothetical protein BC1002_6230 [Burkholderia sp. CCGE1002]
 gi|295440922|gb|ADG20090.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1002]
          Length = 357

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/323 (12%), Positives = 99/323 (30%), Gaps = 15/323 (4%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           Y  +  F P++   I  +    +                 +     M L    + F    
Sbjct: 23  YIGRAVFVPIVFGAIAVYLVVDLTRLLQRIPVIGPRLPVQLRYGLSMFLIGAAIFFAVDM 82

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            +     LV+            PR+   +   +          S P    +      + N
Sbjct: 83  LVANYDALVALA----------PRYQDSLLLMIHKISTLLHLESEPTWESLRRNILTQLN 132

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               +    +    + +D     + ++ A F  +       +  +        A  + + 
Sbjct: 133 IQAMVTGLLASLSSMIIDL---FVIVLYASFLLFERRTFGDKLANMTANSTNAARIRGVV 189

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI--SF 262
             + + I +     T + +  G +   A    G+       ++TA++  +P    +    
Sbjct: 190 IDINRRIGAYLALKTFLGVLLGGLCWLAMRSVGLEFAGLWAILTALLNYVPYIGSVLAVA 249

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             V + +L  G++ +   + +  +   F++   L P+L G  + L        +      
Sbjct: 250 FPVLMSVLQFGDLNSILVVLVSLSAIHFVIGNILDPYLTGNSLNLSPFAIVASMAVWSAL 309

Query: 323 MGLLGLFIGPVLMALIAVIWKES 345
            G+ G F+   + A + +I+ E 
Sbjct: 310 WGVPGAFLAVPITASMTIIFSEF 332


>gi|209518813|ref|ZP_03267627.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
 gi|209500783|gb|EEA00825.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
          Length = 343

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/339 (12%), Positives = 99/339 (29%), Gaps = 35/339 (10%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS--------KKEESSTFLAVI 65
            +++ ++   LY  +    P+  A+I  +  + + +            +        A +
Sbjct: 12  AVLVTLLGWGLYVGRPVLVPIAFAIIATYVVFGLANLLRRIPYLGAPLRDGLRHAIAATL 71

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             ++V     +                   +   ++     P++ + +   +        
Sbjct: 72  MLLTVYLSVDL------------------LLSDRDRLMAVAPKYEATLLVLLTKFAALLH 113

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +      I  +     N    +    S    +       I+ ++ A FF         
Sbjct: 114 IETEANWTAIRRDLLASVNVQAIMTATLSSVSSLL---AAIIVVLLYATFFLIEHAKYRR 170

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + ++  G          +   +   I       T++    G+       L G+       
Sbjct: 171 KLVNFAG---GSTRIVSVIDEINSKIGVYLAMKTLLGAILGIASWICMRLVGLEFAELWA 227

Query: 246 VITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V+  ++  IP  G          +  L  G    A  LF    +  F+V   L P+L+GG
Sbjct: 228 VLIGLLNFIPYAGSWISVAVPTLLAALQFGQWNAAIVLFFSLTLANFVVGHLLDPWLMGG 287

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            + L        L       G+ G F+  P+ + L+   
Sbjct: 288 SLNLSPAIILVSLAVWSSIWGIAGAFLAVPITVGLVIAF 326


>gi|309788792|ref|ZP_07683387.1| conserved hypothetical protein [Shigella dysenteriae 1617]
 gi|308923063|gb|EFP68575.1| conserved hypothetical protein [Shigella dysenteriae 1617]
          Length = 344

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/328 (13%), Positives = 103/328 (31%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +       +
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAAS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ +M + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIILMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 126 HYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKFQQMMAR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+    + A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|315503987|ref|YP_004082874.1| hypothetical protein ML5_3207 [Micromonospora sp. L5]
 gi|315410606|gb|ADU08723.1| protein of unknown function UPF0118 [Micromonospora sp. L5]
          Length = 416

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/299 (12%), Positives = 100/299 (33%), Gaps = 16/299 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G +  ++ + + + +    G    V+ AL +     P       K          + T++
Sbjct: 89  GALGVLLAYALFLGIRNAAGILVLVVIALFLAVGLHPAVVRL-RKWGLPRGLAVAVVTLT 147

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ L +  LL L    + +  + + ++          P ++ ++      ++L  ++   
Sbjct: 148 VVLLIVAGLLALVPPVVTQSGQFLQQL----------PGYVEELRRNPTVNDLVIRYDVM 197

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            +     +   +       +      FG I       ++  I  L +F      + +   
Sbjct: 198 ERVQAAANADTIGRALGGVLGGAQLIFGTI-FRLLTVLVLTIYFLAYF----DKLRELGY 252

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           ++         + I   +   + +  +G   IA+  G+         G+P   AL V+ A
Sbjct: 253 AMVPRSRRQRVRLIGDEILTRVGAYMVGALAIAVLAGVTTFVFALAVGLPYPFALAVVVA 312

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +  +IP         V   + +  ++       ++  +   + +  + P ++   + + 
Sbjct: 313 VTDLIPQIGATLGAVVVTLVGLATDLPVGIACLVFFVLYQQVENYLIYPKIMRRAVSVN 371


>gi|147919479|ref|YP_686781.1| hypothetical protein RCIX2362 [uncultured methanogenic archaeon
           RC-I]
 gi|110622177|emb|CAJ37455.1| conserved hypothetical protein [uncultured methanogenic archaeon
           RC-I]
          Length = 398

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 55/379 (14%), Positives = 132/379 (34%), Gaps = 29/379 (7%)

Query: 3   ETMLNPQGIMRWMIM--FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +++L      +W ++   I++  ++    +  P++ A+ + + + P+      K  ++  
Sbjct: 2   QSLLTKLYEAKWALLGMAIVIFIVWISLPYVTPIVFAMFMYYITRPVKRRL-QKYIKNEA 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            +A+   + +    +  +L+L  + + ++   +++V +       +    + I     + 
Sbjct: 61  VVALGCLLLLTLPLLAIILYLILFAVGQLNTFLAQVNIPLLPPGQLSNLSTSISAIQQSF 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDF--IPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
              +       ++       L         +       GM  +D     I M++  FF  
Sbjct: 121 TNGSFKYESLGNVLQDWYDRLSAYSSSLFSLKDLLYATGMTLVDVAFKTILMLLLAFFLL 180

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKV---IRSTFLGMTIIAIGEGLVLGSAYWL 235
                +++   S    L   +     R V  V       F G  +  I   ++    Y  
Sbjct: 181 LYDDRLARWFKSSFPGLMKEHDGLFVRYVKAVDDDFEKVFFGNILSIIFFAIIATVVYSA 240

Query: 236 AG---------VPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIK-------GNIFNA 278
                      +P  V LG+ + I A++P  G  +    + IY L +          +  
Sbjct: 241 LNFFAPDPAFLIPFPVLLGIFSGIAALLPVLGGWMVDIPILIYALAQSLMNGSFSRYWWY 300

Query: 279 TCLFLWGAIEL--FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
             +       L   +    LRPF+  G + +         + G    G+ GLF+G + + 
Sbjct: 301 LIVMAIAIFVLVENLPTYLLRPFVSHGKVDV--GLLMLAYIIGPVIFGVPGLFLGAMALV 358

Query: 337 LIAVIWKESIMAIKENKEK 355
           +I   +K  +  +   K++
Sbjct: 359 IITHYFKIVVPGLNAEKKE 377


>gi|302869551|ref|YP_003838188.1| hypothetical protein Micau_5104 [Micromonospora aurantiaca ATCC
           27029]
 gi|302572410|gb|ADL48612.1| protein of unknown function UPF0118 [Micromonospora aurantiaca ATCC
           27029]
          Length = 416

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/299 (12%), Positives = 100/299 (33%), Gaps = 16/299 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G +  ++ + + + +    G    V+ AL +     P       K          + T++
Sbjct: 89  GALGVLLAYALFLGIRNAAGILVLVVIALFLAVGLHPAVVRL-RKWGLPRGLAVAVVTLT 147

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ L +  LL L    + +  + + ++          P ++ ++      ++L  ++   
Sbjct: 148 VVLLIVAGLLALVPPVVTQSGQFLQQL----------PGYVEELRRNPTVNDLVIRYDVM 197

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            +     +   +       +      FG I       ++  I  L +F      + +   
Sbjct: 198 ERVQAAANADTIGRALGGVLGGAQLIFGTI-FRLLTVLVLTIYFLAYF----DKLRELGY 252

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           ++         + I   +   + +  +G   IA+  G+         G+P   AL V+ A
Sbjct: 253 AMVPRSRRQRVRLIGDEILTRVGAYMVGALAIAVLAGVTTFVFALAVGLPYPFALAVVVA 312

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +  +IP         V   + +  ++       ++  +   + +  + P ++   + + 
Sbjct: 313 VTDLIPQIGATLGAVVVTLVGLATDLPVGIACLVFFVLYQQVENYLIYPKIMRRAVSVN 371


>gi|28211423|ref|NP_782367.1| permease [Clostridium tetani E88]
 gi|28203864|gb|AAO36304.1| permease [Clostridium tetani E88]
          Length = 381

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 79/217 (36%), Gaps = 2/217 (0%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             +D +      F   F+ +    I  I  L+   +      + +         +   + 
Sbjct: 159 QILDKLLSKTWSFTNSFIKWIFGFIVSIYVLYDKEKFINIGKKIIFITFNEKNGSKIIEF 218

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
            + +  +I        + +   G +      +   P  + + +I  +  MIP   P    
Sbjct: 219 FKNLHYMIGLYIGTKALDSTIIGGIAFIGLTILKSPYPLLIALIVGVTNMIPYFGPFIGM 278

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL-PFLPTFFGLVGGVRT 322
            V+  + I  ++F A  + ++  +        L P L+GG + L PFL  F   +GG   
Sbjct: 279 VVAFTINIFFSLFKAFAVLIFLFLLQQFDAWYLDPKLIGGKVGLTPFLVIFAVTLGG-GL 337

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            G +G+ +   +MA+I +   ++I      + +   N
Sbjct: 338 YGPVGMILAVPIMAVIKLYADKAIKRYDNKRIQQEKN 374


>gi|33866814|ref|NP_898373.1| hypothetical protein SYNW2284 [Synechococcus sp. WH 8102]
 gi|33639415|emb|CAE08799.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 358

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 94/293 (32%), Gaps = 13/293 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
              F    L+A +I F    +   ++  +  S      +  +  + L ++  + L    +
Sbjct: 31  FAPFPGLFLTAALIAFLLD-LPCRWLMGRGLSRIGSITMVMLLTVGLLVLAAVELVPLLI 89

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++ +L+S              W++          L          L             
Sbjct: 90  AQLSQLISASPAL---LAAAEAWINQGQSWAINHGLPADFADLSSDLISQISRVATQFSQ 146

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +    +  G       ++++ +++   F      SI+  L          +   +   
Sbjct: 147 RLLGILGATVGT-----TINVLIILVLAVFLLLGADSIAAGLLEWLPL---PWRGLVGST 198

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           + +  R  F G  ++A+         + +  +P  V   V+     +IP  + ++   VS
Sbjct: 199 LERTFRGYFAGQVVLALILSAGQLVVFTVLEIPYGVLFAVLIGFTTLIPYASALTIVFVS 258

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
             L ++ +      L +   +   IVD+ ++P L+G  + L        L  G
Sbjct: 259 AVLGVQ-DPRTGIELLVAAIVVGQIVDQVIQPRLMGSIVGLQPAWLLIALPIG 310


>gi|284053837|ref|ZP_06384047.1| hypothetical protein AplaP_20499 [Arthrospira platensis str.
           Paraca]
 gi|291566895|dbj|BAI89167.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 382

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 97/303 (32%), Gaps = 6/303 (1%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             I +  L+ +K     + +A+++      +   F   K    +    ++         +
Sbjct: 12  FLIAIYILWRIKQALLMIFAAVVLATALNRLTRQFQRLKLPR-SLAVFLSISLFFLGITI 70

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVP----RWLSDIPGGMWASELWTKHLSHPQS 132
             L +    + ++++L  +V    + G+ +      +L     G     L        Q 
Sbjct: 71  GFLLVVPPLINQLEQLAKQVPAGLEQGLKLLNLLIDYLRTDLNGPLREYLSEVSRDLRQI 130

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                    +      I  F    G   ++  +SI+ +++       D  +  +    L 
Sbjct: 131 RIEQIIQQAQALSNQLIGGFGVVVGT-TVEGLVSILLILVLTLMLLADPQAYRRSSLQLI 189

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
              +      I       +    +G  +  IG  L+     W+  VP   A  ++  ++ 
Sbjct: 190 PAFYRRRMNDILDTCEIALGRWLIGALLNMIGVTLLTVVGLWILRVPLIFANAILAGLLN 249

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +IP   P       + + +  + + AT + +   I   I    + P+L+   + L    T
Sbjct: 250 LIPNIGPAVSVIPPMAIALLDSPWKATLVVMLYIIIQQIETAVIMPYLMAHQVSLLPAIT 309

Query: 313 FFG 315
              
Sbjct: 310 LLA 312


>gi|187250591|ref|YP_001875073.1| putative permease [Elusimicrobium minutum Pei191]
 gi|186970751|gb|ACC97736.1| putative permease [Elusimicrobium minutum Pei191]
          Length = 347

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 49/332 (14%), Positives = 98/332 (29%), Gaps = 25/332 (7%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +   +  +  V+L F   F   V    +I    + + +  I    + +    ++      
Sbjct: 18  ISVCVAILASVALAFCLIFTKSVSMPFVIAVLIYTVLAPMIRFLTKKTKMPNLLILSLTF 77

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
                    +  +    +   +S      +  I +                W    +   
Sbjct: 78  LAVCGLTALVAIFIYNSIGSFISGADAYREKLIDIAN--------------WATFTASKY 123

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +  I +   L       +  F    G + L   +S   +II LFFF+    +  Q+    
Sbjct: 124 NFHIDNAFILDALRNLPVFTFVKSLGSVLLSLSISTFLVIIILFFFFAGSRAAEQKTTK- 182

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                     K  + +   I         +++  G+V+        V      G IT  +
Sbjct: 183 --------ESKTMQEIQSRISFYITVKVAVSLITGIVVWIILGAFNVELAFMFGFITFFL 234

Query: 252 AMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
             IP    I      V +  L  G       +        F++   + P ++G  + +  
Sbjct: 235 NFIPNVGSIVAVLLPVPVIFLQYGLGSRFIIIMSLAITAQFVLGNIIEPKVMGSAVDMHP 294

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +     LV      G+ G F+   L A I V+
Sbjct: 295 VTVICALVVWSLIWGIAGAFLAVPLTAAIQVV 326


>gi|126699991|ref|YP_001088888.1| hypothetical protein CD2376 [Clostridium difficile 630]
 gi|254975961|ref|ZP_05272433.1| hypothetical protein CdifQC_11639 [Clostridium difficile QCD-66c26]
 gi|255093348|ref|ZP_05322826.1| hypothetical protein CdifC_11919 [Clostridium difficile CIP 107932]
 gi|255101527|ref|ZP_05330504.1| hypothetical protein CdifQCD-6_12009 [Clostridium difficile
           QCD-63q42]
 gi|255307401|ref|ZP_05351572.1| hypothetical protein CdifA_12472 [Clostridium difficile ATCC 43255]
 gi|255315094|ref|ZP_05356677.1| hypothetical protein CdifQCD-7_12117 [Clostridium difficile
           QCD-76w55]
 gi|255517764|ref|ZP_05385440.1| hypothetical protein CdifQCD-_11681 [Clostridium difficile
           QCD-97b34]
 gi|255650877|ref|ZP_05397779.1| hypothetical protein CdifQCD_11871 [Clostridium difficile
           QCD-37x79]
 gi|260683952|ref|YP_003215237.1| hypothetical protein CD196_2217 [Clostridium difficile CD196]
 gi|260687612|ref|YP_003218746.1| hypothetical protein CDR20291_2263 [Clostridium difficile R20291]
 gi|306520769|ref|ZP_07407116.1| hypothetical protein CdifQ_13746 [Clostridium difficile QCD-32g58]
 gi|115251428|emb|CAJ69261.1| putative membrane protein [Clostridium difficile]
 gi|260210115|emb|CBA64249.1| putative membrane protein [Clostridium difficile CD196]
 gi|260213629|emb|CBE05447.1| putative membrane protein [Clostridium difficile R20291]
          Length = 340

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 59/163 (36%), Gaps = 5/163 (3%)

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +S    S   +    + K   +   +V++   +    IA    +V        G P 
Sbjct: 175 GDKLSDSKISFIYNSLVFFGKSFVKNFGEVMKVQVM----IAFINSVVSMIFLGFMGFPQ 230

Query: 241 HVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             ALG +  ++ +IP    I     +++     G I     + L   I   +    L P 
Sbjct: 231 IWALGFMIFVLGLIPVAGVIVSLIPLTVIAFNTGGITKVFGVLLMICIVHAVETYILNPK 290

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L+    KLP    F  L+ G   +G+ GL IG  +   +  I 
Sbjct: 291 LMSNRTKLPVCFVFIILLVGEHYLGVWGLLIGVPIFMFLMDIL 333


>gi|82776830|ref|YP_403179.1| putative transport protein [Shigella dysenteriae Sd197]
 gi|81240978|gb|ABB61688.1| putative transport protein [Shigella dysenteriae Sd197]
          Length = 344

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/328 (13%), Positives = 103/328 (31%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +       +
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAAS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ +M + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIILMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 126 HYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKFQQMMAR--PVEGMAAIQRAIGSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+    + A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|58580075|ref|YP_199091.1| transport protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58424669|gb|AAW73706.1| transport protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 389

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/341 (12%), Positives = 113/341 (33%), Gaps = 18/341 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +    +  +L+  +    P++ A+       PI                +I  +     
Sbjct: 54  VLATLAVGYTLWAAQTIILPIMLAVFFALIGNPILRGLRKLYIPRFLGALLILCLG---- 109

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               L       +            A QH   +   + ++   +  +    ++ +     
Sbjct: 110 ----LAGTVTLAVQLAGPAAEWAQQAPQHMQQIAHDVRNLTKPVMQANQAAENFARAAGG 165

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           +      +    +D   +   R          S++ +++  FFF   G S+ +   +L  
Sbjct: 166 EGQRGVQIVRTQMDDPYKALVR----TPKLAASVLAVVLLTFFFMVYGESLQRHAIALLP 221

Query: 194 HLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH--VALGVITAI 250
           +     +  +I   + + +    L +++I    GLV     ++  +P    +  G +  +
Sbjct: 222 NRQQQRFTTEIMLDIEREVSRYVLTISVINTLVGLVFAGILYVLKIPLPEAILWGTVVGL 281

Query: 251 MAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +   P   P+    + + +         ++    +       I  + + P ++G  + + 
Sbjct: 282 LNFAPYVGPLIGVMLMLLMGFVEFRTTLSSLLPAILYLALHTIEGQVVTPIVLGRRMAIS 341

Query: 309 FLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMA 348
            L    GL+      G++GL +  P+L+ +  V+ +  +M 
Sbjct: 342 PLMLILGLMLFGWLWGMVGLLLAVPLLVCIKMVLSRVDVMQ 382


>gi|88813395|ref|ZP_01128632.1| hypothetical protein NB231_07055 [Nitrococcus mobilis Nb-231]
 gi|88789361|gb|EAR20491.1| hypothetical protein NB231_07055 [Nitrococcus mobilis Nb-231]
          Length = 369

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 109/337 (32%), Gaps = 28/337 (8%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + + +++ +LY     F P+  A +I     P+       K                   
Sbjct: 35  IFVLMVMYTLYLAAPLFMPLTVAFLISMMFAPLIRGLKKIKIPPP--------------- 79

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           I   L L     L    +    V A+Q     P+ L +I   ++        +   +  K
Sbjct: 80  ISAALVLASLLALGFGAVYGLSVPASQWIQKAPQALREIDHKLYG---LMGPMDKLKRAK 136

Query: 135 ILSETFLKTNGIDFIPRFAS-------RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              E  +  N  D +    S                   +   +I L+F    G S  ++
Sbjct: 137 QEIEEAVPGNNDDKVDSMTSIRWNPIQWLLTGTWAVVYGLGVSVILLYFLLASGDSFLRK 196

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT-IIAIGEGLVLGSAYWLAGVPSHVALGV 246
           L  +            +    +   + FLG   +I I  G V  +A +  G+P+ +  GV
Sbjct: 197 LVRILPRFEDKRNAVETIQHIQRSIAIFLGTITLINICLGAVAAAALYALGMPNPLLFGV 256

Query: 247 ITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           +  ++   P   P+      + + LL   ++               +  + + P L G  
Sbjct: 257 MVGLLNFAPYIGPLISSMILLVVALLSLDDVSQMLLAPALVLALNALEGQLITPILAGHR 316

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           + L  +  F  +       G++G+ I   L A + ++
Sbjct: 317 LNLSPVVIFLSITLWGWMWGIIGILIAVPLAASVKIV 353


>gi|172036286|ref|YP_001802787.1| hypothetical protein cce_1371 [Cyanothece sp. ATCC 51142]
 gi|171697740|gb|ACB50721.1| hypothetical protein cce_1371 [Cyanothece sp. ATCC 51142]
          Length = 348

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/309 (13%), Positives = 98/309 (31%), Gaps = 10/309 (3%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + I    L+ ++     V +A++       +                +I  ++++ L  +
Sbjct: 17  LIISGYILWEIRQVLLLVFTAVVFATALNRLVKWLEQ-FNIRRNLGIIIVVIAIIILSSL 75

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
               +    + + ++L++ +    +        LS+      +   W        +L   
Sbjct: 76  FAGLVVPSFVDQFQKLLALLPTVWERLRSNLILLSE----TQSRFDWLPQPPSLSNLLTR 131

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +  L     +F            L   L  IF++        D     +    L    +
Sbjct: 132 LQPLLTDIFTNFF-----TVFSNSLAVILQGIFVLFLTVTMIIDPKKYRRLFLKLFPSFY 186

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                +I  +    + +   G+TI  +  G + G   WL  V   +   ++  ++  IP 
Sbjct: 187 RKRGDEILTLSEVALGNWLTGVTINCLFIGALSGVGLWLLQVKLVLVHALLAGLLNFIPN 246

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             P +     + + +  N +    + +W  I   I    L P ++   + L    T    
Sbjct: 247 VGPATSVIFPLMVALLDNPWKIWAILIWYFIIQNIESYWLTPTVMAKQVSLLPAVTLMAQ 306

Query: 317 VGGVRTMGL 325
           +   +T G+
Sbjct: 307 IFFAQTFGI 315


>gi|218248122|ref|YP_002373493.1| hypothetical protein PCC8801_3369 [Cyanothece sp. PCC 8801]
 gi|218168600|gb|ACK67337.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 8801]
          Length = 344

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/350 (13%), Positives = 116/350 (33%), Gaps = 14/350 (4%)

Query: 13  RWMIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           +W+   ++ +S+Y L   +       +A++I      + + F  K     ++  +++   
Sbjct: 5   QWLAFIVVAISVYILWQIRQLLLLFFTAVVIANGLNHLVNWFQRK-GIKRSYGVLLSMTF 63

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++   +     +      ++ EL+  V    +  I   R L+     +       K+L  
Sbjct: 64  LLIAIVGFFWIVIPPFAEQLPELIQLVPQGIEELITTLRSLA-----VKLDPELLKNLPT 118

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            + +    +  +       I           L   LS++ ++        +     Q   
Sbjct: 119 LEEISQEFQPLVNQ-----IAGRGLSVFYTTLAIPLSLVLLLALSLMLLANPQPYRQGFI 173

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L    + +    I       +    + + +  I    +      +  +P  +A  ++T 
Sbjct: 174 RLFPSFYRSRINDILVNCDCCLHGWLISILLKMIIFASLSFIGLLILQIPLALAQAMLTG 233

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I+A IP    I      I + +    + +  + +   I   I    L P ++   + LP 
Sbjct: 234 ILAFIPNIGLILSVIPPIAIALLETPWKSIVIIIIYLIIQQIDIHFLSPLIMKEKVILPP 293

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             T    +      G+LG  +   L  +  V  KE ++    +  ++ S 
Sbjct: 294 AITLLAQLFFAMIFGVLGFLLAFPLAVVGKVWVKEVLIKDILDSWQVKSQ 343


>gi|116618882|ref|YP_819253.1| permease [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116097729|gb|ABJ62880.1| Predicted permease [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
          Length = 331

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/343 (13%), Positives = 113/343 (32%), Gaps = 27/343 (7%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
            +  +   R+ ++  I++ ++ LK F + +L  +I  + +  +        + S      
Sbjct: 6   TIQKRIPYRYGVLLAIILLIFALKQFMSLLLLTIIFSYLAMSVAKPLAHFLKISRVLSIA 65

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  +  + +  + +       + ++K +++  +  N                      W 
Sbjct: 66  LVYIIFISVVSLAIQHGAATLIEQIKSMITLAMNWN----------------------WQ 103

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
            +       K +++     N  D I    S+           ++  ++  F F      +
Sbjct: 104 DNALLQDVYKNVNQYTSMFNSKDLISESLSQL-NHIGHVIYQLVLALLFSFIFSMTYPKL 162

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVI---RSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
                +     F  ++ +   IV + I      F    II      ++         P  
Sbjct: 163 RLWSMNFLHSPFKKFFGEFYIIVHRFIIILGKLFEIQLIICTINTALMFLVLLSLHFPYL 222

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +   ++  ++ +IP  G  IS   ++I   I G+      + +  A+        L P L
Sbjct: 223 LGFTILIFVLGLIPVFGVVISLVPLTITAFIIGDWDTVIIIVVAVALIHLFESYFLHPHL 282

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +     +P L     L+      G+ GL IG  ++  +   ++
Sbjct: 283 MSQKTHMPILIILLNLIIMEHFFGVWGLIIGLPILTFLLDFFQ 325


>gi|309793364|ref|ZP_07687791.1| putative AI-2 transport protein TqsA [Escherichia coli MS 145-7]
 gi|308122951|gb|EFO60213.1| putative AI-2 transport protein TqsA [Escherichia coli MS 145-7]
          Length = 344

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 105/328 (32%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ VM + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 126 HYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  ++  +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKIQQMMAR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+    + A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|205354800|ref|YP_002228601.1| hypothetical protein SG3855 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207858820|ref|YP_002245471.1| hypothetical protein SEN3405 [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|205274581|emb|CAR39631.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206710623|emb|CAR34981.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|326629944|gb|EGE36287.1| Putative membrane protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 349

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 47/321 (14%), Positives = 115/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + IIL  ++   G    +L AL       P+ + FI +  +       +A   V
Sbjct: 14  LLKLASLVIILAGIHAAAGIIVQLLLALFFAIVLNPLVTWFIRRGVKRP-----LAITIV 68

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L       + E ++ +   ++               +    L  + L   
Sbjct: 69  VVVMLIVLTALVGVLAASLNEFIAMLPKYSKE--------------LTRKVLHLQELMPF 114

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    D I  F +           SI+ +++ + F   +   +  +L  
Sbjct: 115 LNLHMSPERMLRGMDSDKIMLFTTTLMTGVSGAMASIVLLVMTVVFMLFEVRHVPYKL-R 173

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G ++     L  +   +  GV+  +
Sbjct: 174 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGAIIWLGLALMDIQFALMWGVLAFL 232

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  G+ IS     I  L+    +    +     +   ++   + P ++G  + +  
Sbjct: 233 LNYVPNIGSVISAVPPMIQALLFNGFYECVLVGALFLLVHMVIGNIMEPRMMGHRLGMST 292

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           L  F  L+     +G +G+ +
Sbjct: 293 LVVFLSLLVWGWLLGPVGMLL 313


>gi|322806902|emb|CBZ04472.1| membrane protein [Clostridium botulinum H04402 065]
          Length = 267

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 72/203 (35%), Gaps = 7/203 (3%)

Query: 149 IPRFASRFGMIFLDYCLSII-------FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
           I  +    G   L+  + +         + I +++F   G  I Q+   +         K
Sbjct: 59  IENYTVSIGENILNKFVGLGENILDYAVIPIIVYYFLAAGDKIIQKFFIIFPVKIRGMIK 118

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            +   + K++    +   I+ +   ++        G+   + L +I     +IP   P+ 
Sbjct: 119 NVFEDIDKILARYIISQIILCLIITILTFLVLIGLGIKLPILLSLINGFFNIIPYFGPVI 178

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
            +  +I +    +   A    +       I    L P + G  + +  L     L+ G +
Sbjct: 179 GSLPAILIAFTKSPKTALWALILLYFIQQIEGDILSPKITGDSVDMHPLTVILLLLIGGK 238

Query: 322 TMGLLGLFIGPVLMALIAVIWKE 344
             G  G+ +   +  ++ +I+++
Sbjct: 239 IYGFAGMVLAIPIGVIMKIIYED 261


>gi|294102743|ref|YP_003554601.1| protein of unknown function UPF0118 [Aminobacterium colombiense DSM
           12261]
 gi|293617723|gb|ADE57877.1| protein of unknown function UPF0118 [Aminobacterium colombiense DSM
           12261]
          Length = 355

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/317 (13%), Positives = 107/317 (33%), Gaps = 27/317 (8%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  + +    + ++ +    + L+F +G   P++ A +I +   P+  +   KK      
Sbjct: 20  RYGLRSQVFFLGFLSIVAAGMVLHFARGVVMPLVVAWLISYIFKPMIRTLERKK-----I 74

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             V++  +++ +F+   L    +    +    +                       +  +
Sbjct: 75  PPVLSITALIAVFLGLCLLALSFLYRRLVPFANAFPS-------------------YYDK 115

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L        ++  I +E  L+ +    +  +        +    ++  MI+ L F     
Sbjct: 116 LLLLVQEFGKTNDIPTELLLEFDWGKRLTAWLITLPGTAISLVSNLFLMIVFLVFILLGS 175

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            + S +L+           ++I   + K I        +I+   G+ +  A  L GV   
Sbjct: 176 PTSSDKLNRAFSPKTSVRVQQIIDSISKQIGRYLTTAVVISAMTGIAVWMALKLIGVDFS 235

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRP 298
           V  GV+  ++  IP  G+ ++     +  L+K   +   A             +   L P
Sbjct: 236 VNWGVLAFLLNFIPYIGSILASIPPILVALVKFYPDFTPAIITAFALLSIQVGIGNLLAP 295

Query: 299 FLVGGPIKLPFLPTFFG 315
            ++G  + +  +     
Sbjct: 296 KVMGDTLDINPIVVLVS 312


>gi|292492865|ref|YP_003528304.1| hypothetical protein Nhal_2852 [Nitrosococcus halophilus Nc4]
 gi|291581460|gb|ADE15917.1| protein of unknown function UPF0118 [Nitrosococcus halophilus Nc4]
          Length = 380

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/343 (15%), Positives = 124/343 (36%), Gaps = 10/343 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            ++   +L   Y L+  F P+L A  + +   P++       +        +  + ++  
Sbjct: 29  ILLGVFLLWFGYQLRAIFIPLLLAFALAYLFDPLFRWGERYYKLPRPVTISLILILLVVG 88

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +  L +L    + +  EL+  +    Q                   +   +   +P   
Sbjct: 89  GMSLLAWLGPELLKQFAELLRGLTHYLQILTLKYDLDPLRTLETQLGKWVQRMEENPVRF 148

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            I +   L T     +       G       + ++      FF      SI  ++  L  
Sbjct: 149 VIENTEILLTGTTQAVTVVGRVLGTTTYMGAMILLVPFY-FFFIAWHFGSIMDKIKGLIP 207

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY--WLAGVPSHVALGVITAIM 251
                    I++ + + + + F G  ++++    +   ++   LA VP  + LG+   ++
Sbjct: 208 VKKKEQTLAIAKEMDEAVAAFFRGRLVVSLITAGLFSISWSPLLADVPYWLILGISGGLL 267

Query: 252 AMIPGGAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKT----LRPFLVGGP 304
             IP  A +++ A  I+  ++   GN F    + +W ++   IV       L P++ G  
Sbjct: 268 NFIPYAAALAWLAALIFKGLEIGFGNGFQLWAVIIWPSLAYGIVQFIDGWLLTPWIQGRN 327

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           + L  +     ++ G    G+ GL +   + A   +++ E I+
Sbjct: 328 LNLSTITVIIVVLIGGTVGGIYGLLLCIPIAACAKILFTELIL 370


>gi|88601670|ref|YP_501848.1| hypothetical protein Mhun_0359 [Methanospirillum hungatei JF-1]
 gi|88187132|gb|ABD40129.1| protein of unknown function UPF0118 [Methanospirillum hungatei
           JF-1]
          Length = 350

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 50/341 (14%), Positives = 113/341 (33%), Gaps = 24/341 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             + I      FIIL  L    GF  P L ++        +   F  +  +      +  
Sbjct: 10  TDRIIFLTACCFIILAGLKMAGGFIGPFLLSVFAAVIFSVVSLWFQKRGFDPRISGYLAF 69

Query: 67  TVSVMCLF-IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            + + CL  +V ++ L    ++E    + + + +N   I        I            
Sbjct: 70  FIFLGCLIGVVAMVVLSISPLIEHIPRIEEGIQSNMGEIDTILSKFGIKVSTLIPA---- 125

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                            +     +   +      F+    ++  ++    F   +    S
Sbjct: 126 -----------------SQMTGSLGVISPEMVTSFIGQLSALFIVLFTTLFLLLEATVFS 168

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           Q+++++          +++     VI    +    +    G   G A ++ GV      G
Sbjct: 169 QKINTVLGSYRQELATRMTEFGSVVIEYVIIRT-KVNFVTGAGFGIALFIIGVQDPWLWG 227

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           ++  ++  +P  G  I+    ++  LI+ N + A  + +  +I     +  L P L G  
Sbjct: 228 LLMFVLNFVPYIGFIIALVPPTVLALIEINPYAALLVVIVASIVNLFSENVLFPELAGRG 287

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           ++L     F  ++     +G  G+ +   L  L+ +I +  
Sbjct: 288 MELSPAIVFISMIFWGYFLGGAGVVVAVPLTVLLKMILESY 328


>gi|315501555|ref|YP_004080442.1| hypothetical protein ML5_0744 [Micromonospora sp. L5]
 gi|315408174|gb|ADU06291.1| protein of unknown function UPF0118 [Micromonospora sp. L5]
          Length = 383

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 64/166 (38%), Gaps = 1/166 (0%)

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +DG S+ + +             +  R   + + +   G  IIA  + + +G A  +  V
Sbjct: 188 KDGRSMWRWVLRRLTGPRRELTAEAGRAGWRTLGAYSRGTMIIAAIDAIGIGLALVVLRV 247

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLR 297
           P  + L +IT +   +P        AV++ + +  N      L L   I +  ++   L 
Sbjct: 248 PLALPLALITFLGGFVPIIGATVAGAVAVLVALAANGPTTALLTLAAVIAVQQIEGNLLE 307

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           P ++   ++L        +  G    G+ G F+   + A++  +  
Sbjct: 308 PLVMRRQVQLHPAVILVVVTAGTLVAGVAGAFVSVPIAAVLWRVLD 353


>gi|88607126|ref|YP_505557.1| hypothetical protein APH_0995 [Anaplasma phagocytophilum HZ]
 gi|88598189|gb|ABD43659.1| putative membrane protein [Anaplasma phagocytophilum HZ]
          Length = 363

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 51/354 (14%), Positives = 122/354 (34%), Gaps = 12/354 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   ++   ++    FL+      + AL I +   PI +  +      +    VI   
Sbjct: 2   KYINLLLVALAVVGIGLFLRPVLYACIYALFIAYLLNPIVTKLVLIGMSRAVASFVIICA 61

Query: 69  ---SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
               +  L ++ +  L+   +  +K L+ +V   N   I      S +P           
Sbjct: 62  SAGVIGTLIVMLMPVLYSQALGVIKLLIDRVPFLNLEDIKDILSSSGLPSYQEIKSATEN 121

Query: 126 --HLSHPQSLKILSETFLK--TNGIDFIPRFASRFGMIFLDY---CLSIIFMIIALFFFY 178
             +L      +     FLK   +   +  +  +      L      ++I+  ++  F+  
Sbjct: 122 PLNLLTSDLFRGDGAEFLKLFKDAPSYFVKAVAGIAHSSLGIGSSIVTILTSLLLSFYIL 181

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            +  SI++    L    +   +      + +VI S   G T++ +         + +  +
Sbjct: 182 ANWPSITKIALELIPRSYVRDFALCFHKIDEVISSYLRGQTLVCLVLACYYSFCFVVIRL 241

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF--IVDKTL 296
              + +G ++ ++  +P   P     +S+ + I         + +     +   I    +
Sbjct: 242 EYSLVMGFVSGLLTFLPYIGPSLCCILSVCIAISQGFGITKVVLVALMFLVGQMIESYVV 301

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            P +VG  + L       G+V      G  G  +     A+++V+ + ++   K
Sbjct: 302 TPGIVGKRLALNQAWLVIGVVVFSSHAGFWGALLSVPFTAILSVLIQFAVKKYK 355


>gi|299144220|ref|ZP_07037300.1| putative membrane protein [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518705|gb|EFI42444.1| putative membrane protein [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 408

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 56/361 (15%), Positives = 126/361 (34%), Gaps = 16/361 (4%)

Query: 9   QGIMRWMIMFIILVSLY-------FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +  +R +   ++L SL         +      +++A+I+ F   P+ + F +KK     +
Sbjct: 50  KLAIRILFGVVVLYSLKLIFNKYPIVSDTIWALIAAIIVSFLINPVVTYFETKKISRK-Y 108

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS-----DIPGG 116
             +I  VSV+ +  + L+ +    + E+  L+  +         +   LS          
Sbjct: 109 GVIIVYVSVILVLAILLIIVIPKTIQEITNLLKSIPSLIDQSGKILNDLSEKLNKSFNYD 168

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
           +  +E     +   Q+        +    +  +               L  + + I  F+
Sbjct: 169 LPKNEQGRTIIEEIQNSINKYIVLVPEAILSKLKNLTMGM-QTVFSKLLRFVLIFIFSFY 227

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
           F  D       LDS            I+  +   +     G  ++A+  G        + 
Sbjct: 228 FTVDKNKFKNILDSHIPVKHRNDILYIASRINSALHDFVKGRLLMAVFVGFATMVYLLIL 287

Query: 237 GVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
           GV   V +G+IT I  +IP  G  + F    ++  I+ +   A  + +   +  +  +  
Sbjct: 288 GVDFAVVIGIITCIADIIPYIGPFLGFVPAVLFAFIE-SPIKALWVAILFLLLQWAENNI 346

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           + P L+     L  +     ++ G    G+ G+     ++++  ++   + M   E    
Sbjct: 347 IAPKLLADKTGLNPMVILIAIIIGGGVFGIWGMIFAVPIVSVALILIDFAKMKYNERNRN 406

Query: 356 I 356
           I
Sbjct: 407 I 407


>gi|16124344|ref|NP_418908.1| hypothetical protein CC_0089 [Caulobacter crescentus CB15]
 gi|13421190|gb|AAK22076.1| conserved hypothetical protein [Caulobacter crescentus CB15]
          Length = 340

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 67/196 (34%), Gaps = 5/196 (2%)

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK-KISRIVPK 209
           R+       F  +  S I ++I L F        ++++ +L  H        K+ + +  
Sbjct: 111 RYFGDVAQSFNSFATSAILVLIYLGFILASRRGFARKIVALFPHHAERETNMKMFQRIRD 170

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS---FTAVS 266
            +       T+  +           L G+ +      +  + A IP            + 
Sbjct: 171 GVEQYLWIQTVTGLMIAASAFMVMTLVGLDNAFFWAFLIFLAAYIPILGGAIGCFLPPIF 230

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
             +    +++ A  LF+      F+V   + P + G  + +        L       G+ 
Sbjct: 231 ALIQFPESLWPAVLLFVALQGIFFVVGNVILPRMQGDSLNMDPTVVLLSLAVWGALWGVP 290

Query: 327 GLFIG-PVLMALIAVI 341
           G+F+  P+ +A + ++
Sbjct: 291 GMFLSTPLTVAAMVIL 306


>gi|225851199|ref|YP_002731433.1| PerM protein [Persephonella marina EX-H1]
 gi|225646386|gb|ACO04572.1| PerM protein [Persephonella marina EX-H1]
          Length = 343

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 117/335 (34%), Gaps = 23/335 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++    + +I+  L   + F    L AL       P++    + K     +++++  + 
Sbjct: 9   TLISIASVVVIIAGLKAAQEFVVQFLLALFFAIMFLPVFKHLNALKI--PKWISLLIILF 66

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +  L +  L       + E+++              +  +   +   M   + + +    
Sbjct: 67  INLLVVYLLALTIVTSVDELRK-------------NLGDYQQKLNLYMDEGQKFLQKFGF 113

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                I  +       + F+      FG I  +    II  +    F   +    SQ++ 
Sbjct: 114 HLPENINLDLLNPNMILQFMSNSLLSFGNILANAVFIIILAV----FILLESDMFSQKIK 169

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            + +         +     + +       T+++I  G       ++ G+   +  GV+T 
Sbjct: 170 MISK---GRKASLLVDQFFESVIKYMKIKTVVSIFTGFFAWIFLFIFGIDFALLWGVLTF 226

Query: 250 IMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  IP  G+ I+     I  LI G I  +  + +W      I+   + P  +G  + L 
Sbjct: 227 LLNFIPTIGSIIAAIPPVIIALIDGGIPLSLIVAVWYLTINMIIGNIIEPRFMGKGVGLS 286

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L     LV     +G +G+F+   L  +  + ++
Sbjct: 287 PLVVLLSLVFWGWVLGTVGMFLSIPLTVIAKMAFE 321


>gi|218705101|ref|YP_002412620.1| putative transport protein [Escherichia coli UMN026]
 gi|293405102|ref|ZP_06649094.1| tqsA [Escherichia coli FVEC1412]
 gi|298380749|ref|ZP_06990348.1| tqsA [Escherichia coli FVEC1302]
 gi|300901603|ref|ZP_07119666.1| putative AI-2 transport protein TqsA [Escherichia coli MS 198-1]
 gi|301026725|ref|ZP_07190134.1| putative AI-2 transport protein TqsA [Escherichia coli MS 69-1]
 gi|218432198|emb|CAR13088.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli UMN026]
 gi|291427310|gb|EFF00337.1| tqsA [Escherichia coli FVEC1412]
 gi|298278191|gb|EFI19705.1| tqsA [Escherichia coli FVEC1302]
 gi|300354997|gb|EFJ70867.1| putative AI-2 transport protein TqsA [Escherichia coli MS 198-1]
 gi|300395372|gb|EFJ78910.1| putative AI-2 transport protein TqsA [Escherichia coli MS 69-1]
          Length = 344

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 104/328 (31%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ VM + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 126 HYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKFQQMMAR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+    + A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALFVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|74312074|ref|YP_310493.1| putative transport protein [Shigella sonnei Ss046]
 gi|73855551|gb|AAZ88258.1| putative transport protein [Shigella sonnei Ss046]
          Length = 344

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/328 (13%), Positives = 104/328 (31%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ VM + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 126 HYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKFQQMMAR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+    + A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ I
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLI 313


>gi|148255935|ref|YP_001240520.1| putative transport protein/permease [Bradyrhizobium sp. BTAi1]
 gi|146408108|gb|ABQ36614.1| putative transport protein/permease [Bradyrhizobium sp. BTAi1]
          Length = 382

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/341 (12%), Positives = 94/341 (27%), Gaps = 14/341 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            ++    L   ++       + S +++G     + S               +  +++  L
Sbjct: 26  VILFAATLAFSWYYAAALFLLFSGMLLGVALNAMTSLLGRVLPWPHPLRLALVCLTLAAL 85

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLA-------------NQHGIPVPRWLSDIPGGMWAS 120
            +  +         + K L   +                +             P     S
Sbjct: 86  LVGIVFLGGTTIADQAKVLSDTIKSQLGNIKGFLDRNGIDTSFFDFSAATQATPAPDGGS 145

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
              T+  SH     + S + L ++G   I     +  +  +    +   ++     F   
Sbjct: 146 TTPTQAPSHSLPGGLPSPSALASSGGA-IVSQTFKLLLGTVSAVGNFFIVLFLGLAFAAQ 204

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                  L  L    +      I   +   +    +          LV      + GV S
Sbjct: 205 PAVYRSGLLFLAPAKYRDQATVIIDRISYTLERWLIAQITTMFAVFLVTWIGLAVIGVQS 264

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              LG+   ++A IP    I    + +   +      A   F+       +    L P +
Sbjct: 265 SFILGIQAGLLAFIPTVGAIIAGVIVVLASLASGWVAAVSAFVLFLGVHAMESYVLTPLI 324

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
               + +P    F   +      G+ GL +   LMA+  V+
Sbjct: 325 QRQALDIPPATLFAFQILLGIVFGVWGLTLALPLMAIAKVM 365


>gi|168789435|ref|ZP_02814442.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC869]
 gi|261227955|ref|ZP_05942236.1| transporter of quorum signal AI-2 [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261258311|ref|ZP_05950844.1| transporter of quorum signal AI-2 [Escherichia coli O157:H7 str.
           FRIK966]
 gi|189370968|gb|EDU89384.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC869]
          Length = 344

 Score = 57.5 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 104/328 (31%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ VM + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIIVMAMVLL-LAYLGSTLNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 126 HYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKFKQMMAR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+    + A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|313609746|gb|EFR85213.1| permease [Listeria monocytogenes FSL F2-208]
          Length = 164

 Score = 57.2 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 52/135 (38%)

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           + K I +      I  +  GL     Y + G P  +  G I     +IP   P    A +
Sbjct: 1   MNKTISTYISSQAIDCMFVGLFTFIGYLIIGQPYALLFGFIAGATNIIPYLGPFLGAAPA 60

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           + + +  +   A  + +   I   I    L P+++G  + +  L     L+      G+ 
Sbjct: 61  VIVALFTSPVQALLVIVVVTIVQQIDSNLLSPYIMGKSLSIHPLTIIIILIVAGNLAGIF 120

Query: 327 GLFIGPVLMALIAVI 341
           G+ +G  L A++  I
Sbjct: 121 GMILGVPLYAVVKTI 135


>gi|212696611|ref|ZP_03304739.1| hypothetical protein ANHYDRO_01151 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676342|gb|EEB35949.1| hypothetical protein ANHYDRO_01151 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 296

 Score = 57.2 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 79/210 (37%), Gaps = 2/210 (0%)

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ-LDSLGEHLFPAYWKKISRIVPK 209
              +      +    S+IF +  L    +D   ++ + + S+ +        K++ +   
Sbjct: 73  TIINSVSSTLVTVATSLIFSVFVLISK-KDLKILANRVIYSIFKKETADEINKVASLSYS 131

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
              S      + ++  GL++    ++  +P      ++ AI   IP   P+  T + + L
Sbjct: 132 TFASYINSKALSSLILGLLVLIGMFILKIPFAAMAAIMVAIADFIPYVGPLIATIIMMIL 191

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           +   + F +    ++  I   +    + P L G  I LP +     +  G    G++G+ 
Sbjct: 192 IFIESPFQSLVFLIFLLIVQQVQGSIIYPALAGKTIGLPSIWIIVSIAIGGSLFGVVGML 251

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +   + +++  +  E +    E KE     
Sbjct: 252 VSIPIASILYTLMNEKMDKKLEKKEISKDQ 281


>gi|313634627|gb|EFS01099.1| YubA [Listeria seeligeri FSL N1-067]
          Length = 160

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 59/137 (43%)

Query: 215 FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGN 274
             G  I+++  G++L   Y + G+P  + L +I A  +++P   P      +I + I  +
Sbjct: 2   IRGQIIVSLCIGILLFIGYLIIGLPYALTLAIIAACTSIVPYLGPAIAITPAIIIAIVTS 61

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
            +    L +   +   +  K + P ++G  +K+  +   F ++      G+LG+      
Sbjct: 62  PWLLVKLVIVWCVVQLLEGKFISPQVMGKTLKVHPITILFVILIAGNLFGVLGVIFAVPG 121

Query: 335 MALIAVIWKESIMAIKE 351
            A++ VI     +  K 
Sbjct: 122 YAVLKVIVTHVFIWFKR 138


>gi|326202317|ref|ZP_08192186.1| protein of unknown function UPF0118 [Clostridium papyrosolvens DSM
           2782]
 gi|325987435|gb|EGD48262.1| protein of unknown function UPF0118 [Clostridium papyrosolvens DSM
           2782]
          Length = 348

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 53/328 (16%), Positives = 116/328 (35%), Gaps = 21/328 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +++L+ +   R +I+    + +YFL+G     L   I  +  +   S    K        
Sbjct: 5   KSILSKKITKRVLILAGFALLVYFLRGMANMFLLTFIFAYLGYTAQSYVFKKT---KIIN 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           + +  V ++  ++V +          +  ++S++    +                + ++ 
Sbjct: 62  SRLLKVIIIFFYLVAVTSAVLILYKYIPVIISELKTLVEQATTFYN-------TTYENKT 114

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               +S  + +KI S      +  + + +  S  G I  D+ ++I+  +    FF  +  
Sbjct: 115 LNYIISLSKEIKISS---YIRDNFEVLYKSISNLGKIGFDFVMAIVLSL----FFILEKN 167

Query: 183 SISQQLDSLGEHLFPAYWKKIS---RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            I +           A + ++S   R   +           I+    ++     +    P
Sbjct: 168 RIVRFTSGFKNSKLSAVYDELSFFGRKFLQSFGKVIQTQITISFINAILSMIMLYFLKFP 227

Query: 240 SHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
               LG +  I+ ++P  G  IS   +S+  L  G       + +  AI   +    L P
Sbjct: 228 QIFGLGFMIFILGLVPVAGVVISLLPLSMIALRIGGPSMIIYVLVLVAILHALESYILNP 287

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
            L+    KLP   TF  L+     +G+ 
Sbjct: 288 KLMSQKTKLPVFYTFVVLIVSEHILGIW 315


>gi|317152380|ref|YP_004120428.1| hypothetical protein Daes_0664 [Desulfovibrio aespoeensis Aspo-2]
 gi|316942631|gb|ADU61682.1| protein of unknown function UPF0118 [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 384

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 51/323 (15%), Positives = 118/323 (36%), Gaps = 19/323 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE--SSTFLAVIAT 67
            ++R ++  +++V L ++ G+ + VL   ++      + +   S+ E    S +LAV+ T
Sbjct: 11  SVVRMVLGALLIVGLIWMLGYLSGVLVPFVVALLLAYLLNPLTSRVERVVRSRWLAVVVT 70

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD-IPGGMWASELWTKH 126
           V+++   +  L+++    +      + +V+        + R + + +P  +W    W + 
Sbjct: 71  VTLLAGTVTGLVWVMAPLIGAEFSHMGRVLADLAGNADLARRVREYLPDEVWV---WLRA 127

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA-------LFFFYR 179
           L+  Q+++ L  +         +           L    S +  ++        + F   
Sbjct: 128 LADDQNVRALFTSNGAMEAARKVVATILPGVRGVLSGTASFLAGLLGLGVILLYVVFLLM 187

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D   I ++        + A          + +   F G  IIA+  G +L   + + G+P
Sbjct: 188 DFGRIRERWPEYLPQQYRARAIDFMGEFEQTMSLYFRGQVIIALLVGALLSVGFMIIGLP 247

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIY-----LLIKGNIFNATCLFLWGAIELFIV-D 293
             V LG+   I+ + P    +      +      L      +    L L   + +  + +
Sbjct: 248 MAVILGMFIGILNIAPYLGTLGLLPAVLLAGLDSLEAGQPPWIGILLVLAVFVVVQAIQE 307

Query: 294 KTLRPFLVGGPIKLPFLPTFFGL 316
             L P + G  + L        L
Sbjct: 308 IILIPKIQGENLGLSPWLILLSL 330


>gi|198243580|ref|YP_002217541.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197938096|gb|ACH75429.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
          Length = 349

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 47/321 (14%), Positives = 114/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + IIL  ++   G    +L AL       P+ + FI +  +       +A   V
Sbjct: 14  LLKLASLVIILAGIHAAAGIIVQLLLALFFAIVLNPLVTWFIRRGVKRP-----LAITIV 68

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E ++ +   ++               +    L  + L   
Sbjct: 69  VVVMLIVLTALVGVLAASFNEFIAMLPKYSKE--------------LTRKVLHLQELMPF 114

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    D I  F +           SI+ +++ + F   +   +  +L  
Sbjct: 115 LNLHMSPERMLRGMDSDKIMLFTTTLMTGVSGAMASIVLLVMTVVFMLFEVRHVPYKL-R 173

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G ++     L  +   +  GV+  +
Sbjct: 174 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGAIIWLGLALMDIQFALMWGVLAFL 232

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  G+ IS     I  L+    +    +     +   ++   + P ++G  + +  
Sbjct: 233 LNYVPNIGSVISAVPPMIQALLFNGFYECVLVGALFLLVHMVIGNIMEPRMMGHRLGMST 292

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           L  F  L+     +G +G+ +
Sbjct: 293 LVVFLSLLVWGWLLGPVGMLL 313


>gi|160943147|ref|ZP_02090384.1| hypothetical protein FAEPRAM212_00632 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445616|gb|EDP22619.1| hypothetical protein FAEPRAM212_00632 [Faecalibacterium prausnitzii
           M21/2]
          Length = 447

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 66/349 (18%), Positives = 128/349 (36%), Gaps = 14/349 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE------SSTFLAVIATVSVMCL 73
           +L     L     P+L+  I+        +    +                I  +S    
Sbjct: 102 VLAFAAKLIDLVLPILAGGILALFINVPMTGLEKRLNRLFGKAKKQPSAKAIHLLSFFIT 161

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
            +  +L L     L + ELV        Q    +PRW + +             L     
Sbjct: 162 LLGVVLVLVLALTLLIPELVQSFHSLYVQIEANIPRWTAYLNAQDADMGWLMNWLEGINW 221

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
            ++L +    T  ID +   A       ++  ++  F +I   +      S+  Q  +L 
Sbjct: 222 EQLLHKV---TASIDTVLVNAVGAVSATVNIAITASFALIISVYMSLSTESLGHQARTLV 278

Query: 193 -EHLFPAYWK---KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +L PA+     K  R+  +   +   G    A+  G+++  A+ +  +P    +GV+T
Sbjct: 279 CAYLKPAHAAGVLKFCRLFRQSFANFLTGQCSEAVILGVLMALAFSVFKIPYGSLVGVLT 338

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           AI A+IP    +    VS++L++  +   A    +      F+ ++ + P +VG  + L 
Sbjct: 339 AICAIIPYVGALISCVVSVFLVLLVDPVLAVRCLIVYLAVQFVENQFIYPRVVGKSVGLS 398

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
            L T    + G +  G++G+     L A++  + KE        KE + 
Sbjct: 399 PLYTLIAAMIGGKLFGIIGIIFFIPLTAVVIELVKEDTFRRLRAKEPLQ 447


>gi|260461377|ref|ZP_05809625.1| protein of unknown function UPF0118 [Mesorhizobium opportunistum
           WSM2075]
 gi|259032914|gb|EEW34177.1| protein of unknown function UPF0118 [Mesorhizobium opportunistum
           WSM2075]
          Length = 364

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 89/271 (32%), Gaps = 4/271 (1%)

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHLSHPQSL 133
           I+P+  +    +  +  L        Q     VPR  + +             L   + +
Sbjct: 78  ILPIALVVGILVGLVAALSEPAATWAQKLPQGVPRLEAHLMVLSGPVHKLQGALEVAEEV 137

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                       +      A             ++  ++ L+F    G +  ++L  +  
Sbjct: 138 ANAPPQGHTMVAVRSDLGLAGTLFAGTKAVLDGLLTTVLVLYFLLLSGDTFLRRLVEILP 197

Query: 194 HLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                    +I + +   I    L +T++    GL   +A +L G+   +  G    ++ 
Sbjct: 198 DFGDKRQAVEIFQRIESDISIYLLTITLMNALVGLATAAAMYLCGIGDVLLWGTTAFLLN 257

Query: 253 MIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            +P   P+    + + + + G  +++ A        +   I  +T+ P L+     L  +
Sbjct: 258 FVPFLGPLLGVGIFLLVGLLGFDSLWWALLPPGLYFLIHLIEGETVTPLLLARRFTLNPV 317

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                L+      G  G  +   L+A++ +I
Sbjct: 318 LVVLSLIFWFWMWGAPGALLAFPLLAMLKII 348


>gi|15802015|ref|NP_288036.1| putative transport protein [Escherichia coli O157:H7 EDL933]
 gi|15831561|ref|NP_310334.1| transport protein [Escherichia coli O157:H7 str. Sakai]
 gi|168750589|ref|ZP_02775611.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757486|ref|ZP_02782493.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4401]
 gi|168763699|ref|ZP_02788706.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4501]
 gi|168771140|ref|ZP_02796147.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4486]
 gi|168775828|ref|ZP_02800835.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783421|ref|ZP_02808428.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4076]
 gi|168800858|ref|ZP_02825865.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC508]
 gi|195938991|ref|ZP_03084373.1| putative transport protein [Escherichia coli O157:H7 str. EC4024]
 gi|208810317|ref|ZP_03252193.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816938|ref|ZP_03258058.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819961|ref|ZP_03260281.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4042]
 gi|209396236|ref|YP_002270673.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4115]
 gi|217328601|ref|ZP_03444682.1| permease, PerM family [Escherichia coli O157:H7 str. TW14588]
 gi|254793218|ref|YP_003078055.1| putative transport protein [Escherichia coli O157:H7 str. TW14359]
 gi|12515579|gb|AAG56588.1|AE005383_10 putative transport protein [Escherichia coli O157:H7 str. EDL933]
 gi|13361774|dbj|BAB35730.1| putative transport protein [Escherichia coli O157:H7 str. Sakai]
 gi|187768663|gb|EDU32507.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015272|gb|EDU53394.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999244|gb|EDU68230.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355555|gb|EDU73974.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4401]
 gi|189359988|gb|EDU78407.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366167|gb|EDU84583.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4501]
 gi|189376932|gb|EDU95348.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC508]
 gi|208724833|gb|EDZ74540.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731281|gb|EDZ79970.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740084|gb|EDZ87766.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157636|gb|ACI35069.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4115]
 gi|209769940|gb|ACI83282.1| putative transport protein [Escherichia coli]
 gi|209769942|gb|ACI83283.1| putative transport protein [Escherichia coli]
 gi|209769946|gb|ACI83285.1| putative transport protein [Escherichia coli]
 gi|217317948|gb|EEC26375.1| permease, PerM family [Escherichia coli O157:H7 str. TW14588]
 gi|254592618|gb|ACT71979.1| transporter of quorum signal AI-2 [Escherichia coli O157:H7 str.
           TW14359]
 gi|320188286|gb|EFW62948.1| Putative transport protein [Escherichia coli O157:H7 str. EC1212]
 gi|326341967|gb|EGD65748.1| Putative transport protein [Escherichia coli O157:H7 str. 1044]
 gi|326343517|gb|EGD67279.1| Putative transport protein [Escherichia coli O157:H7 str. 1125]
          Length = 344

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 104/328 (31%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ VM + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIIVMAMVLL-LAYLGSTLNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 126 HYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKFKQMMAR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+    + A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|291282733|ref|YP_003499551.1| putative permease, PerM family [Escherichia coli O55:H7 str.
           CB9615]
 gi|209769938|gb|ACI83281.1| putative transport protein [Escherichia coli]
 gi|209769944|gb|ACI83284.1| putative transport protein [Escherichia coli]
 gi|290762606|gb|ADD56567.1| Putative permease, PerM family [Escherichia coli O55:H7 str.
           CB9615]
 gi|320641955|gb|EFX11319.1| pheromone autoinducer 2 transporter [Escherichia coli O157:H7 str.
           G5101]
 gi|320647271|gb|EFX16079.1| pheromone autoinducer 2 transporter [Escherichia coli O157:H- str.
           493-89]
 gi|320652564|gb|EFX20833.1| pheromone autoinducer 2 transporter [Escherichia coli O157:H- str.
           H 2687]
 gi|320653085|gb|EFX21279.1| pheromone autoinducer 2 transporter [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320668624|gb|EFX35429.1| pheromone autoinducer 2 transporter [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 344

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 104/328 (31%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ VM + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIIVMAMVLL-LAYLGSTLNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 126 HYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKFKQMMAR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+    + A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|260587707|ref|ZP_05853620.1| membrane protein [Blautia hansenii DSM 20583]
 gi|331084002|ref|ZP_08333109.1| hypothetical protein HMPREF0992_02033 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541972|gb|EEX22541.1| membrane protein [Blautia hansenii DSM 20583]
 gi|330402364|gb|EGG81934.1| hypothetical protein HMPREF0992_02033 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 437

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 107/335 (31%), Gaps = 23/335 (6%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISK----KEESSTFLA-----VIATVSVMCLFIVP 77
           L     PV+   II +   P+ +    +     EE            I     +   +V 
Sbjct: 43  LASILMPVICGAIIAYLLIPVVNFQERRIYYILEEKRHLALDKKHKKIIRYICIAFALVF 102

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS-----ELWTKHLSHPQS 132
              + Y  +  +   + + +++  +    PR++ +I   + +      E  T    +   
Sbjct: 103 AGLVIYSLLAMIMPSILESIISIIN--DSPRYVQNIRHWLESLLKDNPEWQTTVFDYLNR 160

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLD---YCLSIIFMIIALFFFYRDGFSISQQLD 189
                ETFL    +  I +              +  +++  +I   +      +   Q  
Sbjct: 161 YSPKIETFLNVEVLPQIKQLLQSLTTGVFGTLVFIKNLLIGLIISVYMMAGKEAFVTQSK 220

Query: 190 SLGEHLFPAYWKK----ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            L   +F            R + +       G  + +I  G++      + G P  + + 
Sbjct: 221 MLVYAIFDTENANSIVTAFRFIHRTFGGFISGKIVDSIIIGILCYIGTSIIGTPYGLLVS 280

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           V+  +  +IP   P      S ++++  N  +     ++  +        L P ++G   
Sbjct: 281 VVVGVTNVIPFFGPYLGAIPSAFIILMVNPMHCLYFLIFILLLQQFDGNILGPKILGDST 340

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            L        ++     MG+ G+ IG  L A+   
Sbjct: 341 GLSSFMVIVAILLFGGLMGIPGMIIGVPLWAVFMA 375


>gi|257060547|ref|YP_003138435.1| hypothetical protein Cyan8802_2742 [Cyanothece sp. PCC 8802]
 gi|256590713|gb|ACV01600.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 8802]
          Length = 344

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 47/350 (13%), Positives = 116/350 (33%), Gaps = 14/350 (4%)

Query: 13  RWMIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           +W+   ++ +S+Y L   +       +A++I      + + F  K     ++  +++   
Sbjct: 5   QWLAFIVVAISVYILWQIRQLLLLFFTAVVIANGLNHLVNWFQRK-GIKRSYGVLLSMTF 63

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++   +     +      ++ EL+  V    +  I   R L+     +       ++L  
Sbjct: 64  LLIAIVGFFWIVIPPFAEQLPELIQLVPQGIEELITTLRALA-----VKLDPELLRNLPT 118

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            + +    +  +       I           L   LS++ ++        +     Q   
Sbjct: 119 LEEISQQFQPLVNQ-----IAGRGLSVFYTTLAIPLSLVLLLALSLMLLANPQPYRQGFI 173

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L    + +    I       +    + + +  I    +      +  +P  +A  ++T 
Sbjct: 174 RLFPSFYRSRINDILVNCDCCLHGWLISILLKMIIFASLSFIGLLILQIPLALAQAMLTG 233

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I+A IP    I      I + +    + +  + +   I   I    L P ++   + LP 
Sbjct: 234 ILAFIPNIGLILSVIPPIAIALLETPWKSIVIIIIYLIIQQIDIHFLSPLIMKEKVILPP 293

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             T    +      G+LG  +   L  +  V  KE ++    +  ++ S 
Sbjct: 294 AITLLAQLFFAMIFGVLGFLLAFPLAVVGKVWVKEVLIKDILDSWQVKSQ 343


>gi|148544961|ref|YP_001272331.1| hypothetical protein Lreu_1755 [Lactobacillus reuteri DSM 20016]
 gi|184154298|ref|YP_001842639.1| hypothetical protein LAR_1643 [Lactobacillus reuteri JCM 1112]
 gi|325683306|ref|ZP_08162822.1| hypothetical protein HMPREF0536_11744 [Lactobacillus reuteri
           MM4-1A]
 gi|148531995|gb|ABQ83994.1| protein of unknown function UPF0118 [Lactobacillus reuteri DSM
           20016]
 gi|183225642|dbj|BAG26159.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
 gi|324977656|gb|EGC14607.1| hypothetical protein HMPREF0536_11744 [Lactobacillus reuteri
           MM4-1A]
          Length = 372

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 91/259 (35%), Gaps = 19/259 (7%)

Query: 62  LAVIATVSVMCLFIVP-LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           L +I  ++V+   ++P L+      +     +++  +   +H      +++         
Sbjct: 87  LTIILIIAVVFALVIPELITCVKLLIANHSHIINHFIDYFEHSSDFKGFINSFDASKIQW 146

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +   K+L+        +           +   AS          ++  F I  L +    
Sbjct: 147 DKIGKYLTSGVGGTFRT-----------VISTASSVFSAATTAIIAFFFSIYLLIYK--- 192

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
              + +Q   L    F  Y  +I R+     +   +  +G    A   G+       +  
Sbjct: 193 -EMLQRQFTKLLSTYFSRYQTQIIRVLKVFDESYSNYIIGQCKDAAILGISCFIGMTILR 251

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           +P    +GV+TA  A+IP    I   +V + ++   +   A    ++  +   + ++   
Sbjct: 252 MPYASMIGVVTAFGALIPIIGAILGASVGVIIIFAVSPLQAGIFLIFIILLQQLDNRITY 311

Query: 298 PFLVGGPIKLPFLPTFFGL 316
           P +VG  I LP +  F  +
Sbjct: 312 PLVVGRSIGLPSVWVFAAV 330


>gi|331668275|ref|ZP_08369123.1| AI-2 transport protein TqsA (Transport of quorum-sensing
           signalprotein) [Escherichia coli TA271]
 gi|331063469|gb|EGI35380.1| AI-2 transport protein TqsA (Transport of quorum-sensing
           signalprotein) [Escherichia coli TA271]
          Length = 344

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 104/328 (31%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ VM + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 126 HYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKFQQMMAR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+    + A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|126178857|ref|YP_001046822.1| hypothetical protein Memar_0907 [Methanoculleus marisnigri JR1]
 gi|125861651|gb|ABN56840.1| protein of unknown function UPF0118 [Methanoculleus marisnigri JR1]
          Length = 362

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/308 (13%), Positives = 110/308 (35%), Gaps = 25/308 (8%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
           +I+    +P   +  S+        AV     + CL ++ + +L ++    +   +    
Sbjct: 41  MILAMIVYPAAKALQSR--GLPEGAAVGVVTIIACLAVLLMCYLVFFSFENLVSAIPLYQ 98

Query: 98  LANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN-GIDFIPRFASRF 156
                                 +   ++ L+H     I + +F  ++  +     F S  
Sbjct: 99  Q-------------------ELTARLSEVLAHLDRYGIDTGSFSPSSVNLQGFAGFLSSS 139

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
            +   D  L + F+ +   F   +   +  ++  +  +       +    + + +    +
Sbjct: 140 AISIADLLLYLFFIAVTTIFMLLEAPRMPGRIRKVTGN--RPETVEAFSRMSRFLIDFVI 197

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNI 275
             T   +  G + G+  W+ GV + V  G++T +++ IP  G  ++      +  ++  I
Sbjct: 198 VRTEANLVHGFLFGAFLWVMGVHAAVLWGILTFLLSYIPYIGLVVAALPAIFFAWLQFGI 257

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
           + A  +    AI   +V+  +          +P L     ++     +G+ G+     L 
Sbjct: 258 WGAVAVIAAVAILNALVENPIFAHFASRRFDIPALVVVLSVIFWGWALGIAGMIFAVPLT 317

Query: 336 ALIAVIWK 343
            ++ +I++
Sbjct: 318 LIVLMIFQ 325


>gi|302865055|ref|YP_003833692.1| hypothetical protein Micau_0549 [Micromonospora aurantiaca ATCC
           27029]
 gi|302567914|gb|ADL44116.1| protein of unknown function UPF0118 [Micromonospora aurantiaca ATCC
           27029]
          Length = 383

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 65/166 (39%), Gaps = 1/166 (0%)

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +DG S+ + +         A   +  R   + + +   G  IIA  + + +G A  +  V
Sbjct: 188 KDGRSMWRWVLRRLTGPRRALTAEAGRAGWRTLGAYSRGTMIIAAIDAIGIGLALVVLRV 247

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLR 297
           P  + L +IT +   +P        AV++ + +  N      L L   I +  ++   L 
Sbjct: 248 PLALPLALITFLGGFVPIIGATVAGAVAVLVALAANGPTTALLTLAAVIAVQQIEGNLLE 307

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           P ++   ++L        +  G    G+ G F+   + A++  +  
Sbjct: 308 PLVMRRQVQLHPAVILVVVTAGTLVAGVAGAFVSVPIAAVLWRVLD 353


>gi|229589000|ref|YP_002871119.1| putative permease [Pseudomonas fluorescens SBW25]
 gi|229360866|emb|CAY47725.1| putative permease protein [Pseudomonas fluorescens SBW25]
          Length = 356

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 50/343 (14%), Positives = 112/343 (32%), Gaps = 16/343 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + + ++  +++F+   ++  L G  APVL+ +++ +    + ++    +       AV  
Sbjct: 15  DEEAVVLAVLLFLAFTAVLTLGGMLAPVLAGMVLAYLMQGLVTTLERLRL--PGGAAVGL 72

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
             ++         F+    +  +  L             +P  L+     +        H
Sbjct: 73  VFAL---------FMGLLVLFIVVVLPLLWHQLITLFNELPGMLAKWQSLLLLLPERYPH 123

Query: 127 LSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           L   + +    E      G    +   F+     + ++  + ++ + I +FFF +D   I
Sbjct: 124 LVSDEQVLQAIEVARGEIGKFGQWALTFSLSSLPLLVNIMIYLVLVPILVFFFLKDRAMI 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + +         A   +++  + + I +   G  I  I  G V   A+    +     L
Sbjct: 184 GRWVRGYLPR-ERALITRVAEEMNRQIANYIRGKVIEIIICGGVTYIAFIALDLNYAALL 242

Query: 245 GVITAIMAMIPGGAPISFTAVS--IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            ++  I  ++P    +  T     I L   G       L     I   +    L P L  
Sbjct: 243 ALLVGISVVVPYVGAVVVTVPVTLIALFQWGWSDQFIYLMAVYGIIQTLDGNVLVPLLFS 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             + L  +     ++      G  G+F    L  L   +    
Sbjct: 303 EAVNLHPVAIICAVLLFGGLWGFWGVFFAIPLATLFKAVLDAW 345


>gi|145640161|ref|ZP_01795745.1| lipoprotein NlpI [Haemophilus influenzae R3021]
 gi|145274747|gb|EDK14609.1| lipoprotein NlpI [Haemophilus influenzae 22.4-21]
          Length = 184

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 63/176 (35%), Gaps = 3/176 (1%)

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
             + + +FF  +D   + Q +           +K + + + + I +   G  +  +   L
Sbjct: 3   FLVPLMMFFMLKDKSELLQGVSRFLPKNRNLAFK-VWKEMQQQISNYIHGKLLEILIVTL 61

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           +    + + G+   + L     +  ++P  GA I    V++  L +  I       +   
Sbjct: 62  ITYIIFLIFGLNYPLLLAFAVGLSVLVPYIGAVIVTIPVALVALFQFGISPTFWYIIIAF 121

Query: 287 IELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
               ++D   L P+L    + L  L     ++      G  G+F    L  L+  +
Sbjct: 122 AVSQLLDGNLLVPYLFSEAVNLHPLIIIISVLIFGGLWGFWGVFFAIPLATLVKAV 177


>gi|57866582|ref|YP_188189.1| hypothetical protein SERP0602 [Staphylococcus epidermidis RP62A]
 gi|57637240|gb|AAW54028.1| membrane protein, putative [Staphylococcus epidermidis RP62A]
 gi|329738128|gb|EGG74346.1| putative membrane protein [Staphylococcus epidermidis VCU045]
          Length = 361

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/330 (13%), Positives = 108/330 (32%), Gaps = 13/330 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P L +  + +   P  +             A I T+ +  + I+ ++  F   ++   
Sbjct: 41  FLPFLISGFLFYICLPFQNILEKWGFPR---WASITTIFIGLIAIIAIVVSFIAPIIISN 97

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
                    +            +       +  T  ++          T + +N + +I 
Sbjct: 98  INNLIKQTPSLQKEAEQLINFSLRQMDKLPDDVTHRINKAVKSMGDGATSILSNSVSYIT 157

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
            F S            +I +   L +  +D       +    +     +   + + +   
Sbjct: 158 SFIST--------VFLLIMVPFFLIYMLKDHEKFIPAIGKFFKGERKVFVVDLLKDLNFT 209

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYL 269
           ++S   G   ++I  G++L   Y + G+P    L +   +  +IP  G  +SF   +I  
Sbjct: 210 LKSYIQGQVTVSIILGIILYIGYTIIGLPYTPLLVLFAGVANLIPFLGPWLSFAPAAILG 269

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           +I G       + +   I   +    + P ++G  + +  L     ++      G   + 
Sbjct: 270 IIDG-PSTFIWVCVVTLIAQQLEGNVITPNVMGKSLSIHPLTIIVVILAAGDLGGFTLIL 328

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +   L A+I  +        +   +K +SN
Sbjct: 329 VAVPLYAVIKTLVSNIFKYRQRIVDKANSN 358


>gi|28198155|ref|NP_778469.1| transport protein [Xylella fastidiosa Temecula1]
 gi|28056215|gb|AAO28118.1| transport protein [Xylella fastidiosa Temecula1]
          Length = 387

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/347 (13%), Positives = 113/347 (32%), Gaps = 20/347 (5%)

Query: 7   NPQGIMRWMIMFIILVS--LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
            PQ  +  +++  + V   L+  +    PVL A+       PI  +    +   +    +
Sbjct: 43  RPQAPLSLVVLATLAVGYTLWATQAVILPVLLAVFFALVGNPILRALGHIRIPRAIGALL 102

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  + +    ++         +         +  A      V R +  +   M  +    
Sbjct: 103 LLCLGISGTVVL--------SVELAGPASEWIQQAPDKIRQVARQVRHLTRPMQQANQAV 154

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           + L+     +   ++ +    +           M      +S++ +I+  FFF   G  +
Sbjct: 155 ESLARAADGETERQSQIVRTRLYNPYTVL----MDTHKLVISVLGVILLTFFFMVFGEKL 210

Query: 185 SQQLDSLGE--HLFPAYWKKISRIVPKVIRSTFLGMTIIAIG-EGLVLGSAYWLAGVPSH 241
            ++  +L    H        +  +  ++ R       I A+               +   
Sbjct: 211 QRKAIALLPNHHQQRFTASILRNLEHEISRYVLTISVINALVGLIFSGLLLLLSIPLQEA 270

Query: 242 VALGVITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           +  G + A++   P   P+      + I L+       A    L   +   +  + + P 
Sbjct: 271 LLWGTVVALLNFAPYVGPLIGVLLMLLIGLVQFHESSRALLPALLYLMLHTLEGQLITPI 330

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKES 345
           ++G  + +  L     L+      GL+GL +  P+L+ +  V+ +  
Sbjct: 331 ILGHRMAISPLMLIVALLLFGSLWGLIGLLLAVPMLVCIKMVMSRIE 377


>gi|238795949|ref|ZP_04639461.1| AI-2 transport protein tqsA [Yersinia mollaretii ATCC 43969]
 gi|238720154|gb|EEQ11958.1| AI-2 transport protein tqsA [Yersinia mollaretii ATCC 43969]
          Length = 332

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/315 (15%), Positives = 109/315 (34%), Gaps = 22/315 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +I+  +        P L A+ +     P+    + K +   T   V+    ++ L  +
Sbjct: 5   LVVIMAGIKAASPIVVPFLLAIFLSIVLNPL-VKLLEKIKIPRTLAIVLLVTLIILLMAL 63

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
               L                  N+    +P++   +   M   + +    +   S+  +
Sbjct: 64  LFSRLGVSL--------------NEFARSLPQYRGMMLEKMRDLQEFAMRFNIEFSVDDI 109

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +    +  ++F+ R  S          L ++ ++  LF   R  + +    D+      
Sbjct: 110 MKHVDPSTAVNFVTRLLSHLSGAMASTFLLLMTVVFMLFEVERLPYKMQLMFDN------ 163

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
           P     I +     +    +  TII+I  G+V+       GV      G++  ++  IP 
Sbjct: 164 PEQGNAILKRALNGVTHYLVIKTIISIATGIVIWLFLAAMGVRFAFLWGLLAFVLNYIPN 223

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ ++     I  L+     +A  +     +   I    + P ++G  + L  L  F  
Sbjct: 224 IGSVLAAIPPIIQALLFNGFADAFAVTGGYILINLIGGNIIDPRMMGRGLGLSTLVVFLS 283

Query: 316 LVGGVRTMGLLGLFI 330
           L+     +G +G+ +
Sbjct: 284 LIFWGWLLGPIGMLL 298


>gi|302754184|ref|XP_002960516.1| hypothetical protein SELMODRAFT_73510 [Selaginella moellendorffii]
 gi|300171455|gb|EFJ38055.1| hypothetical protein SELMODRAFT_73510 [Selaginella moellendorffii]
          Length = 583

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/205 (11%), Positives = 64/205 (31%), Gaps = 7/205 (3%)

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
           +  T+    +    +        +          L++          +       L    
Sbjct: 367 YGGTSIAMAVGSSIASGAAGIFHFLTQAAVFFSLLYYLITSQSGGVVEQVLGMIPLSETA 426

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             + + ++ + + S  L     A  +       +   G+       ++  + A++P    
Sbjct: 427 RIRSATVLNRAVSSVLLATVKSAFYQAAFTWLLFRAFGIHFLYVSTLLAIVTAVLPVFPL 486

Query: 260 ISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
                  +  L+++G+   A  L +   + L   ++ ++  + G         T   + G
Sbjct: 487 GVASIPAAAQLVVQGDYLAAVVLGVVHCLVLDFGNRAIQDEIPGHNA----YLTGLSIAG 542

Query: 319 GVRTMGLL--GLFIGPVLMALIAVI 341
           G+        G  +GP+LM ++  +
Sbjct: 543 GMALFSPALEGAIMGPLLMTVLTAL 567


>gi|318040640|ref|ZP_07972596.1| hypothetical protein SCB01_02995 [Synechococcus sp. CB0101]
          Length = 358

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/294 (15%), Positives = 107/294 (36%), Gaps = 15/294 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  F A  ++A +I F    + + +++ +        ++     + L ++  L+L    +
Sbjct: 34  LAPFPALFVAAALIAFLLD-LPTRWLADRGLPRWLAVLLVVGLGLGLLVLSALWLVPRLV 92

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++ EL++           +P WL++    +   E W      P     LS T       
Sbjct: 93  EQLGELIN----------ALPSWLAEGEIWLDRLEEWASGRGLPTDFTDLSSTLFARASQ 142

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI-SR 205
             +    S+  +  L   + I    + +           +++ +      P   +++ + 
Sbjct: 143 --LASQLSQRVLGILGATVGITVNTVIVVVLAVFLLLGGERIVAGLARWLPESVRELVTT 200

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + +  R  F G  ++A+   ++    + L G+P  V   V      ++P  + ++   V
Sbjct: 201 TLNRTFRGYFAGQVLLALILSVLQIVVFTLLGIPYGVLFAVAIGFTTLVPYASALTIVLV 260

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           S+ L +  N      +         +VD+ ++P L+G  + L        L  G
Sbjct: 261 SVLLALD-NPRTGLEVLAAAISVGQVVDQVIQPRLMGSIVGLQPAWLLVSLPVG 313


>gi|311279560|ref|YP_003941791.1| hypothetical protein Entcl_2254 [Enterobacter cloacae SCF1]
 gi|308748755|gb|ADO48507.1| protein of unknown function UPF0118 [Enterobacter cloacae SCF1]
          Length = 344

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 57/343 (16%), Positives = 121/343 (35%), Gaps = 22/343 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P     +  +        
Sbjct: 7   TLNGLKIVIMLGMLVIILTGIRFAADIVVPFILALFIAVILNPAVQFMVRWRIPR----- 61

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
                      +   L + +  +L +  L S     N+ G   P++ S +   +   E  
Sbjct: 62  ----------VVAVTLLIAFIILLAVLLLASLGTSLNELGRTAPQYRSSLVVPLQNVEPM 111

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            + L    S++ LS+       +  + RF ++          SI  +++ + F   +   
Sbjct: 112 LQRLGIQVSVEQLSKFIDPNAAMLLVTRFLTQLSNAMS----SIFLLLLTVVFMLLEVPQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +L  L     P       +     +    +  T I++  GLV      L  V     
Sbjct: 168 LPTKLQQLMSR--PVEGMAAIQRAIDSVTHYLVLKTAISLVTGLVAWWMLALLDVRFAFI 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++     + +L+ G I +A  +         +    L P ++G
Sbjct: 226 WGMVAFALNYIPNIGSILAAIPPILQVLVFGGISDALLVMAGYLAINMLFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             + L  L  F  L+     +G +G+ +   L  ++ +  + S
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEHS 328


>gi|192291486|ref|YP_001992091.1| hypothetical protein Rpal_3110 [Rhodopseudomonas palustris TIE-1]
 gi|192285235|gb|ACF01616.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           TIE-1]
          Length = 383

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/334 (13%), Positives = 93/334 (27%), Gaps = 9/334 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
              +L + +   G    + + ++ G     +                 +  + +  L I 
Sbjct: 29  FAALLYAAWQFAGTLFLIFAGVLFGVFLNALTELTGKLVGGPHGLRLALICLVLTGLTIG 88

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW------LSDIPGGMWASELWTKHLSHP 130
                      + K L   +     +   +           ++     A+   T     P
Sbjct: 89  VAFLGGNTISQQAKALSGTIKTQIVNVKALLERNGVDTGFLELNPTPSAAHPETTTPVQP 148

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           ++L    E     +G   I     +  +  +    +   ++     F          L  
Sbjct: 149 RNLPSAGEI---ASGGGAIVSQTLKLILGTIGAVGNFFIVMFLGLAFAAQPSVYRNGLVR 205

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +    +      I     ++++   L   I  +    V  +   L G+P    LG+   +
Sbjct: 206 MVPRRYRVQADVIVTDTGEMLKRWLLAQLITMMAVFAVTATGLSLIGIPGAFILGIQAGL 265

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +A IP    I    + +   I          F+       +    L P +    I +P  
Sbjct: 266 LAFIPTVGAILGGLIIVLAAIGSGWIAVVSAFVLFLGVHALESYILTPLIQRQAIDIPPA 325

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             F   +      GL GL +   LMA+  V+   
Sbjct: 326 TLFAMQILLGIVFGLWGLALALPLMAIGRVVLDH 359


>gi|159030703|emb|CAO88376.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 345

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/309 (11%), Positives = 99/309 (32%), Gaps = 11/309 (3%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + + L  L+ ++     +  A++              +         +I  ++ + + I+
Sbjct: 12  LIMALYVLWQIRQLLLLIFMAIVFTVALNRCVKGL-QRLGIKRGLAILITLLTSLGIAIL 70

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             + +    + + ++L+  +  A           + I         W   L +   L   
Sbjct: 71  FFIIIVPPFIEQFQKLIELLPQAWNLVRN-----NSIQWRQQFQFDWLPSLPNLTDLGQQ 125

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +        +F   F++          L ++F+++       +     Q    L  + +
Sbjct: 126 LQPLGTFVFSNFFTFFSNSVAA-----ILQLLFVLVLAMMMLANPQPYRQAFLKLFPNFY 180

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               ++I  +    + +  LG+ I +   GL+ G    +  +   +   ++  ++  IP 
Sbjct: 181 RRRAEEILTLSEAGLGNWLLGIAISSTMVGLLSGFGLLVLQINLVLVHAILAGLLNFIPN 240

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             P +     I + +    +    + +   I   +    L P ++   + L    T    
Sbjct: 241 IGPTASVIFPILIAVIDAPWKIVAILILYFIIQNVESYLLTPTVMAKQVSLLPAITLIAQ 300

Query: 317 VGGVRTMGL 325
           +   +  G+
Sbjct: 301 IFFAQMFGI 309


>gi|77165520|ref|YP_344045.1| hypothetical protein Noc_2055 [Nitrosococcus oceani ATCC 19707]
 gi|254434948|ref|ZP_05048456.1| conserved domain protein, putative [Nitrosococcus oceani AFC27]
 gi|76883834|gb|ABA58515.1| Protein of unknown function UPF0118 [Nitrosococcus oceani ATCC
           19707]
 gi|207091281|gb|EDZ68552.1| conserved domain protein, putative [Nitrosococcus oceani AFC27]
          Length = 380

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 49/338 (14%), Positives = 111/338 (32%), Gaps = 10/338 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             +   +L   Y L+  F P+L A    +   P+        +        +    V+  
Sbjct: 29  IFLGAFLLWFGYQLRAIFIPLLIAFAFAYLFDPLIRWGERYCKMPRPVTISLILALVIIG 88

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +  L +L    + +  EL+  ++   Q        +  +       E W +HL      
Sbjct: 89  GMSLLAWLGPEFLKQFAELLRGLIDYLQTLATEYD-IHLLKSLRAKLEKWVQHLEENPVG 147

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            I+  T +   G               +      + +    F       +I +++  L  
Sbjct: 148 FIVENTEILLIGTTQAVTVVRHILGTAVYIGTMALLIPFYFFMIAWHFGAIIRKIKDLMP 207

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY--WLAGVPSHVALGVITAIM 251
                    I + + + + + F G  +I +    +    +    A VP  + LG+   I+
Sbjct: 208 AREKDQTLAIIKEMDEAVAAFFRGRLVIVLVTAGLFSLGWSPLFADVPYWLVLGISAGIL 267

Query: 252 AMIPGGAPISFT------AVSIYLLIKGNIFNATCLFLWGAIELFIVDK-TLRPFLVGGP 304
             IP  A +++        ++I      +++       +    +  +D   L P++ G  
Sbjct: 268 NFIPYLAALAWLAAILSKGLAIGFSGDFDLWLVIIWPSFVYGVVQFIDGWLLTPWIQGRS 327

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           + L  +     ++ G    GL GL +   + A   +++
Sbjct: 328 LNLGAITVIIVVLIGGTMGGLYGLLLCIPMAACAKILF 365


>gi|56750221|ref|YP_170922.1| hypothetical protein syc0212_c [Synechococcus elongatus PCC 6301]
 gi|56685180|dbj|BAD78402.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 321

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 122/307 (39%), Gaps = 17/307 (5%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           VL A ++ F    +   ++ ++    +   +      + L I    +L    ++E+  L 
Sbjct: 2   VLVAALMAFILD-LPVRWLVQRGLPRSLALLTVLGGGIALIIALATWLLPPLLVEVNVLT 60

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK--TNGIDFIPR 151
                       +P W       +   E WT   + P     L +  +   T+ ++ +  
Sbjct: 61  R----------ALPHWYDTAKLEVLQFEAWTLSFNLPLDWVSLFQRVVTEVTDLVETLST 110

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                 + F D  L+ +  ++   F    G  +S  +    + L   +  +++  + +  
Sbjct: 111 QLLSLTLEFFDGALNFLITVVLTLFLLMYGEEVSGTV---LQRLPAIWRDRLAIGLRQKF 167

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           ++   G  IIA    ++L  A  L  +P  + LG++  + ++IP    +   ++   LL 
Sbjct: 168 QAFLGGELIIASLYSVLLLVALSLLKIPFALLLGLVLGLGSLIPFLDILLVISLCGVLLF 227

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
           + +   A  LF+   +   I D  + P L+G  I L  +     ++ G++  G+LGLF+ 
Sbjct: 228 Q-DPAIAAKLFITVFLLGQINDNLIEPRLMGQIIGLNPVWILLSVLLGLKIFGILGLFVA 286

Query: 332 PVLMALI 338
             L +L+
Sbjct: 287 VPLASLM 293


>gi|260868092|ref|YP_003234494.1| putative inner membrane protein [Escherichia coli O111:H- str.
           11128]
 gi|257764448|dbj|BAI35943.1| predicted inner membrane protein [Escherichia coli O111:H- str.
           11128]
 gi|323180915|gb|EFZ66453.1| hypothetical protein ECOK1180_0209 [Escherichia coli 1180]
          Length = 344

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 104/328 (31%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ VM + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 126 HYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKFQQMMAR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+    + A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|157161061|ref|YP_001458379.1| putative transport protein [Escherichia coli HS]
 gi|157066741|gb|ABV05996.1| putative permease, PerM family [Escherichia coli HS]
          Length = 344

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 104/328 (31%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ VM + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 126 HYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKFQQMMAR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+    + A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWEWLLGPVGMLL 313


>gi|323947965|gb|EGB43959.1| TQSA AI-2 transporter tqsA [Escherichia coli H120]
          Length = 344

 Score = 56.8 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 104/328 (31%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ VM + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 126 HYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKFQQMMAR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+    + A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|302767572|ref|XP_002967206.1| hypothetical protein SELMODRAFT_86640 [Selaginella moellendorffii]
 gi|300165197|gb|EFJ31805.1| hypothetical protein SELMODRAFT_86640 [Selaginella moellendorffii]
          Length = 610

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/205 (11%), Positives = 64/205 (31%), Gaps = 7/205 (3%)

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
           +  T+    +    +        +          L++          +       L    
Sbjct: 394 YGGTSIAMAVGSSIASGAAGIFHFLTQAAVFFSLLYYLITSQSGGVVEQVLGMIPLSETA 453

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             + + ++ + + S  L     A  +       +   G+       ++  + A++P    
Sbjct: 454 RIRSATVLNRAVSSVLLATVKSAFYQAAFTWLLFRAFGIHFLYVSTLLAIVTAVLPVFPL 513

Query: 260 ISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
                  +  L+++G+   A  L +   + L   ++ ++  + G         T   + G
Sbjct: 514 GVASIPAAAQLVVQGDYLAAVVLGVVHCLVLDFGNRAIQDEIPGHNA----YLTGLSIAG 569

Query: 319 GVRTMGLL--GLFIGPVLMALIAVI 341
           G+        G  +GP+LM ++  +
Sbjct: 570 GMALFSPALEGAIMGPLLMTVLTAL 594


>gi|227546571|ref|ZP_03976620.1| hypothetical integral membrane protein [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|227212888|gb|EEI80767.1| hypothetical integral membrane protein [Bifidobacterium longum
           subsp. infantis ATCC 55813]
          Length = 504

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 70/212 (33%), Gaps = 2/212 (0%)

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           ++T+ +      A         + L+++ +++  ++    G  + +             +
Sbjct: 175 IQTSWVTDFAGTAMSTVGGLFSFLLNLMTVVMTTYYISAAGPKLRRSFCQWLAPNTQRRF 234

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA-MIP-GGA 258
             +  +    I S     +I+A+           +  VP  + L +   +++  IP  G 
Sbjct: 235 LLVWTVAQGQISSFLFSRSILALINATCTAIFLEILHVPYWLPLALFCGVVSQFIPTVGT 294

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            I      ++         A  + ++  +   I +  L P +    + +     F  ++ 
Sbjct: 295 YIGGALPVLFAWGNRGWTYAVAVLVFIIVYQQIENLILSPRISQRTMDINAAVAFLAVLA 354

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
                G  G F+   + A +  I++      +
Sbjct: 355 FGSLFGAFGAFLALPVTASLQAIFRAYTKRYE 386


>gi|222874383|gb|EEF11514.1| predicted protein [Populus trichocarpa]
          Length = 257

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 77/200 (38%), Gaps = 3/200 (1%)

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++   
Sbjct: 24  NLHMSPERMLQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKM-RF 82

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
             +    +   + R +  V     L   + ++  G+++     L GV   +   V+  ++
Sbjct: 83  ALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGVIVWLGLELMGVQFALMWAVLAFLL 141

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             +P  GA IS     I +L+   ++    +     +   ++   L P ++G  + +  +
Sbjct: 142 NYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMSTM 201

Query: 311 PTFFGLVGGVRTMGLLGLFI 330
             F  L+     +G +G+ +
Sbjct: 202 VVFLSLLIWGWLLGPVGMLL 221


>gi|84622072|ref|YP_449444.1| transport protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84366012|dbj|BAE67170.1| transport protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 368

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/341 (12%), Positives = 113/341 (33%), Gaps = 18/341 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +    +  +L+  +    P++ A+       PI                +I  +     
Sbjct: 33  VLATLAVGYTLWAAQTIILPIMLAVFFALIGNPILRGLRKLYIPRFLGALLILCLG---- 88

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               L       +            A QH   +   + ++   +  +    ++ +     
Sbjct: 89  ----LAGTVTLAVQLAGPAAEWAQQAPQHMQQIAHDVRNLTKPVMQANQAAENFARAAGG 144

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           +      +    +D   +   R          S++ +++  FFF   G S+ +   +L  
Sbjct: 145 EGQRGVQIVRTQMDDPYKALVR----TPKLAASVLAVVLLTFFFMVYGESLQRHAIALLP 200

Query: 194 HLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH--VALGVITAI 250
           +     +  +I   + + +    L +++I    GLV     ++  +P    +  G +  +
Sbjct: 201 NRQQQRFTTEIMLDIEREVSRYVLTISVINTLVGLVFAGILYVLKIPLPEAILWGTVVGL 260

Query: 251 MAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +   P   P+    + + +         ++    +       I  + + P ++G  + + 
Sbjct: 261 LNFAPYVGPLIGVMLMLLMGFVEFRTTLSSLLPAILYLALHTIEGQVVTPIVLGRRMAIS 320

Query: 309 FLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMA 348
            L    GL+      G++GL +  P+L+ +  V+ +  +M 
Sbjct: 321 PLMLILGLMLFGWLWGMVGLLLAVPLLVCIKMVLSRVDVMQ 361


>gi|319401698|gb|EFV89906.1| conserved hypothetical protein [Staphylococcus epidermidis FRI909]
          Length = 361

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 46/330 (13%), Positives = 108/330 (32%), Gaps = 13/330 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P L +  + +   P  +             A I T+ +  + I+ ++  F   ++   
Sbjct: 41  FLPFLISGFLFYICLPFQNILEKWGFPR---WASITTIFIGLIAIIAIVVSFIAPIIISN 97

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
                    +            +       +  T  ++          T + +N + +I 
Sbjct: 98  INNLIKQTPSLQREAEQLINFSLRQMDKLPDDVTHRINKAVKSMGDGATSILSNSVSYIT 157

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
            F S            +I +   L +  +D       +    +     +   + + +   
Sbjct: 158 SFIST--------VFLLIMVPFFLIYMLKDHEKFIPAIGKFFKGERKVFVVDLLKDLNFT 209

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYL 269
           ++S   G   ++I  G++L   Y + G+P    L +   +  +IP  G  +SF   +I  
Sbjct: 210 LKSYIQGQVTVSIILGIILYIGYTIIGLPYTPLLVLFAGVANLIPFLGPWLSFAPAAILG 269

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           +I G       + +   I   +    + P ++G  + +  L     ++      G   + 
Sbjct: 270 IIDG-PSTFIWVCVVTLIAQQLEGNVITPNVMGKSLSIHPLTIIVVILAAGDLGGFTLIL 328

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +   L A+I  +        +   +K +SN
Sbjct: 329 VAVPLYAVIKTLVSNIFKYRQRIVDKANSN 358


>gi|227364101|ref|ZP_03848200.1| permease [Lactobacillus reuteri MM2-3]
 gi|227070891|gb|EEI09215.1| permease [Lactobacillus reuteri MM2-3]
          Length = 368

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 91/259 (35%), Gaps = 19/259 (7%)

Query: 62  LAVIATVSVMCLFIVP-LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           L +I  ++V+   ++P L+      +     +++  +   +H      +++         
Sbjct: 87  LTIILIIAVVFALVIPELITCVKLLIANHSHIINHFIDYFEHSSDFKGFINSFDASKIQW 146

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +   K+L+        +           +   AS          ++  F I  L +    
Sbjct: 147 DKIGKYLTSGVGGTFRT-----------VISTASSVFSAATTAIIAFFFSIYLLIYK--- 192

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
              + +Q   L    F  Y  +I R+     +   +  +G    A   G+       +  
Sbjct: 193 -EMLQRQFTKLLSTYFSRYQTQIIRVLKVFDESYSNYIIGQCKDAAILGISCFIGMTILR 251

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           +P    +GV+TA  A+IP    I   +V + ++   +   A    ++  +   + ++   
Sbjct: 252 MPYASMIGVVTAFGALIPIIGAILGASVGVIIIFAVSPLQAGIFLIFIILLQQLDNRITY 311

Query: 298 PFLVGGPIKLPFLPTFFGL 316
           P +VG  I LP +  F  +
Sbjct: 312 PLVVGRSIGLPSVWVFAAV 330


>gi|87198930|ref|YP_496187.1| hypothetical protein Saro_0908 [Novosphingobium aromaticivorans DSM
           12444]
 gi|87134611|gb|ABD25353.1| protein of unknown function UPF0118 [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 355

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 80/236 (33%), Gaps = 1/236 (0%)

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
               L     SH  +++ L    + +  +  + +     G IF  +  + +  I+A++F 
Sbjct: 116 QLERLALWAQSHGITMQNLDLQAIASQVLGSVGQVTRALGGIFGGFTTAFLIFILAIYFV 175

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
                   + +  +      A+++  +  + K +R    G  I    EG          G
Sbjct: 176 LEP-DLYRRGVAWMLPERSRAHFEGTAVRMGKSLRMLLFGRLIGMAVEGFATWGLLAWWG 234

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           VP    LG++T ++A +P        A+ I +   G             I   +    + 
Sbjct: 235 VPMAALLGLLTGLLAFLPNIGAPISGALMIMVGFSGGTEMGLFCIAVYVIVQTVDGNIIV 294

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           P +      L         +      G+LGL +   ++A++ +  +        N+
Sbjct: 295 PMVAKRTADLAPALVLGAQLMFGLLFGILGLMLADPIIAMLKIALERQAERNDANR 350


>gi|294952861|ref|XP_002787486.1| transmembrane protein, putative [Perkinsus marinus ATCC 50983]
 gi|239902488|gb|EER19282.1| transmembrane protein, putative [Perkinsus marinus ATCC 50983]
          Length = 333

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/208 (12%), Positives = 74/208 (35%), Gaps = 4/208 (1%)

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS-ISQQLDSLGEHL 195
           +       GI F     +      ++      F + AL++  +     +   + ++ + +
Sbjct: 49  ASGHASLAGIQFSVSVVTGIIGTLVESLFHFFFAVTALYYLLQSEQGGLHDYMATVLQVI 108

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
            P+++  +  I+ + +++       ++I   +     + +   P       +  ++ ++P
Sbjct: 109 DPSFY--LYNILRRALKAILYSAIKMSIFHAVYTWLVFSVFDCPVAYIPACVAFVIGLLP 166

Query: 256 GGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             +P      +  Y+ +  +   A       AI  F+V   + P +           +  
Sbjct: 167 VISPCSVSFLIVPYIFLSYDRGMAQVCGAIAAILNFLVWWYVGPAIYSEIPDANPWMSAV 226

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            +  GV   G  G+ +GP +  +   ++
Sbjct: 227 AVGLGVSWFGARGVILGPAIATVPFTLY 254


>gi|38679233|gb|AAR26251.1| CpsX [Streptococcus thermophilus]
          Length = 172

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 59/157 (37%)

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
              +  +  I+     + F+  +I A   G +      +   P    + ++    AMIP 
Sbjct: 7   GKTFHYVVAILNNRFHNFFVYQSIEACILGTLCYIGMRIFNFPYAATISILIGFSAMIPV 66

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
                   +   L++  ++  A     +  I        + P++VGG   LP +     +
Sbjct: 67  LGAYIGVTIGTILIMTHSVILALLFVAYVVILQQFKGNLIYPYVVGGSTGLPVVWVILAI 126

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             G    G+LG+ +     A +  I K++++  ++ K
Sbjct: 127 TIGSALGGILGMLVSVPGAATLYQIVKDNVVTREKAK 163


>gi|328544580|ref|YP_004304689.1| Permease, PerM family [Polymorphum gilvum SL003B-26A1]
 gi|326414322|gb|ADZ71385.1| Permease, PerM family [Polymorphum gilvum SL003B-26A1]
          Length = 340

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/335 (13%), Positives = 107/335 (31%), Gaps = 28/335 (8%)

Query: 16  IMFIILVSLYFLKGFFAPVLS------ALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           I+ +    +  + G  A V        A  +     P +           T+LA+  TV+
Sbjct: 4   ILIVAACIVIVIAGLRAAVFWTVPLLLATFLAILLAPAFLRLRD--FGLPTWLALTVTVA 61

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + L    ++ L    + +    +          + +   +  I                
Sbjct: 62  GLALAGAAIVALLQASLTDFAARLPDYQ--QTLRVQIADLMQSI---------------E 104

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                +  E                +              ++I   F   +   ++++LD
Sbjct: 105 DNGFVLPEELLAPFTDRQTAMSLLGQIARTLSGLLTQAFMVLIFTAFMLAEAAGLNRKLD 164

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L E       +   R   + +R      T++++  G ++    WL GV + + +G++  
Sbjct: 165 LLPE--VSQESRLALRRNLQKVRRYLALKTVMSLLTGALVVVMLWLMGVENALFMGLLAF 222

Query: 250 IMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  IP  G+ ++     +   I+     A    +   +    V   + P ++G  + L 
Sbjct: 223 LLNYIPNVGSFLAAIPGVLLAFIQFGPGMALVAAIGYFVLNTAVSNGIEPRVLGDNLGLS 282

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L     LV     +G +G+ +   +  ++  + +
Sbjct: 283 PLAIIVSLVVWGWVLGPIGMLLAVPITMMLKAVLE 317


>gi|110641723|ref|YP_669453.1| putative transport protein [Escherichia coli 536]
 gi|191174309|ref|ZP_03035816.1| putative permease, PerM family [Escherichia coli F11]
 gi|300978404|ref|ZP_07174254.1| putative AI-2 transport protein TqsA [Escherichia coli MS 200-1]
 gi|110343315|gb|ABG69552.1| putative membrane protein [Escherichia coli 536]
 gi|190905388|gb|EDV65020.1| putative permease, PerM family [Escherichia coli F11]
 gi|222033359|emb|CAP76100.1| UPF0118 inner membrane protein ydgG [Escherichia coli LF82]
 gi|300308136|gb|EFJ62656.1| putative AI-2 transport protein TqsA [Escherichia coli MS 200-1]
 gi|312946201|gb|ADR27028.1| putative transport protein [Escherichia coli O83:H1 str. NRG 857C]
 gi|324014786|gb|EGB84005.1| putative AI-2 transport protein TqsA [Escherichia coli MS 60-1]
          Length = 344

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 104/328 (31%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ VM + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQAIEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 126 HYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKFQQMMAR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+    + A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|23466223|ref|NP_696826.1| hypothetical protein BL1675 [Bifidobacterium longum NCC2705]
 gi|23326967|gb|AAN25462.1| hypothetical integral membrane protein in upfo118 [Bifidobacterium
           longum NCC2705]
          Length = 504

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 70/212 (33%), Gaps = 2/212 (0%)

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           ++T+ +      A         + L+++ +++  ++    G  + +             +
Sbjct: 175 IQTSWVTDFAGTAMSTVGGLFSFLLNLMTVVMTTYYISAAGPKLRRSFCQWLAPNTQRRF 234

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA-MIP-GGA 258
             +  +    I S     +I+A+           +  VP  + L +   +++  IP  G 
Sbjct: 235 LLVWTVAQGQISSFLFSRSILALINATCTAIFLEILHVPYWLPLALFCGVVSQFIPTVGT 294

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            I      ++         A  + ++  +   I +  L P +    + +     F  ++ 
Sbjct: 295 YIGGALPVLFAWGNRGWTYAVAVLVFIIVYQQIENLILSPRISQRTMDINAAVAFLAVLA 354

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
                G  G F+   + A +  I++      +
Sbjct: 355 FGSLFGAFGAFLALPVTASLQAIFRAYTKRYE 386


>gi|16129559|ref|NP_416118.1| pheromone AI-2 transporter [Escherichia coli str. K-12 substr.
           MG1655]
 gi|24112988|ref|NP_707498.1| putative transport protein [Shigella flexneri 2a str. 301]
 gi|30063115|ref|NP_837286.1| putative transport protein [Shigella flexneri 2a str. 2457T]
 gi|89108442|ref|AP_002222.1| predicted inner membrane protein [Escherichia coli str. K-12
           substr. W3110]
 gi|110805574|ref|YP_689094.1| putative transport protein [Shigella flexneri 5 str. 8401]
 gi|170020046|ref|YP_001725000.1| putative transport protein [Escherichia coli ATCC 8739]
 gi|170081265|ref|YP_001730585.1| transporter of quorum signal AI-2 [Escherichia coli str. K-12
           substr. DH10B]
 gi|187731327|ref|YP_001880355.1| putative transport protein [Shigella boydii CDC 3083-94]
 gi|188492603|ref|ZP_02999873.1| putative permease, PerM family [Escherichia coli 53638]
 gi|191165884|ref|ZP_03027721.1| putative permease, PerM family [Escherichia coli B7A]
 gi|194436582|ref|ZP_03068683.1| putative permease, PerM family [Escherichia coli 101-1]
 gi|218554168|ref|YP_002387081.1| putative transport protein [Escherichia coli IAI1]
 gi|218699833|ref|YP_002407462.1| putative transport protein [Escherichia coli IAI39]
 gi|238900817|ref|YP_002926613.1| putative inner membrane protein [Escherichia coli BW2952]
 gi|253773443|ref|YP_003036274.1| transporter [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161662|ref|YP_003044770.1| putative transport protein [Escherichia coli B str. REL606]
 gi|256018207|ref|ZP_05432072.1| putative transport protein [Shigella sp. D9]
 gi|256022739|ref|ZP_05436604.1| putative transport protein [Escherichia sp. 4_1_40B]
 gi|293414917|ref|ZP_06657560.1| tqsA [Escherichia coli B185]
 gi|293445975|ref|ZP_06662397.1| tqsA [Escherichia coli B088]
 gi|300819341|ref|ZP_07099540.1| putative AI-2 transport protein TqsA [Escherichia coli MS 107-1]
 gi|300821531|ref|ZP_07101678.1| putative AI-2 transport protein TqsA [Escherichia coli MS 119-7]
 gi|300907258|ref|ZP_07124914.1| putative AI-2 transport protein TqsA [Escherichia coli MS 84-1]
 gi|300918734|ref|ZP_07135309.1| putative AI-2 transport protein TqsA [Escherichia coli MS 115-1]
 gi|300927438|ref|ZP_07143157.1| putative AI-2 transport protein TqsA [Escherichia coli MS 182-1]
 gi|300931463|ref|ZP_07146787.1| putative AI-2 transport protein TqsA [Escherichia coli MS 187-1]
 gi|300951053|ref|ZP_07164924.1| putative AI-2 transport protein TqsA [Escherichia coli MS 116-1]
 gi|301029241|ref|ZP_07192353.1| putative AI-2 transport protein TqsA [Escherichia coli MS 196-1]
 gi|301303109|ref|ZP_07209235.1| putative AI-2 transport protein TqsA [Escherichia coli MS 124-1]
 gi|301647765|ref|ZP_07247557.1| putative AI-2 transport protein TqsA [Escherichia coli MS 146-1]
 gi|307138251|ref|ZP_07497607.1| putative transport protein [Escherichia coli H736]
 gi|307310829|ref|ZP_07590475.1| protein of unknown function UPF0118 [Escherichia coli W]
 gi|312969617|ref|ZP_07783800.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|331642185|ref|ZP_08343320.1| AI-2 transport protein TqsA (Transport of quorum-sensing
           signalprotein) [Escherichia coli H736]
 gi|331663068|ref|ZP_08363978.1| AI-2 transport protein TqsA (Transport of quorum-sensing
           signalprotein) [Escherichia coli TA143]
 gi|331673175|ref|ZP_08373943.1| AI-2 transport protein TqsA (Transport of quorum-sensing
           signalprotein) [Escherichia coli TA280]
 gi|84027916|sp|P0AFS5|TQSA_ECOLI RecName: Full=AI-2 transport protein tqsA; AltName: Full=Transport
           of quorum-sensing signal protein
 gi|84027917|sp|P0AFS6|TQSA_SHIFL RecName: Full=AI-2 transport protein tqsA; AltName: Full=Transport
           of quorum-sensing signal protein
 gi|1742635|dbj|BAA15335.1| predicted inner membrane protein [Escherichia coli str. K12 substr.
           W3110]
 gi|1787885|gb|AAC74673.1| pheromone AI-2 transporter [Escherichia coli str. K-12 substr.
           MG1655]
 gi|24051948|gb|AAN43205.1| putative transport protein [Shigella flexneri 2a str. 301]
 gi|30041364|gb|AAP17093.1| putative transport protein [Shigella flexneri 2a str. 2457T]
 gi|110615122|gb|ABF03789.1| putative transport protein [Shigella flexneri 5 str. 8401]
 gi|169754974|gb|ACA77673.1| protein of unknown function UPF0118 [Escherichia coli ATCC 8739]
 gi|169889100|gb|ACB02807.1| transporter of quorum signal AI-2 [Escherichia coli str. K-12
           substr. DH10B]
 gi|187428319|gb|ACD07593.1| putative permease, PerM family [Shigella boydii CDC 3083-94]
 gi|188487802|gb|EDU62905.1| putative permease, PerM family [Escherichia coli 53638]
 gi|190904015|gb|EDV63727.1| putative permease, PerM family [Escherichia coli B7A]
 gi|194424614|gb|EDX40600.1| putative permease, PerM family [Escherichia coli 101-1]
 gi|218360936|emb|CAQ98508.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli IAI1]
 gi|218369819|emb|CAR17590.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli IAI39]
 gi|238862552|gb|ACR64550.1| predicted inner membrane protein [Escherichia coli BW2952]
 gi|242377332|emb|CAQ32077.1| transporter of quorum signal AI-2 [Escherichia coli BL21(DE3)]
 gi|253324487|gb|ACT29089.1| protein of unknown function UPF0118 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973563|gb|ACT39234.1| predicted inner membrane protein [Escherichia coli B str. REL606]
 gi|253977758|gb|ACT43428.1| predicted inner membrane protein [Escherichia coli BL21(DE3)]
 gi|260449277|gb|ACX39699.1| protein of unknown function UPF0118 [Escherichia coli DH1]
 gi|281601034|gb|ADA74018.1| putative permease [Shigella flexneri 2002017]
 gi|291322805|gb|EFE62233.1| tqsA [Escherichia coli B088]
 gi|291432565|gb|EFF05544.1| tqsA [Escherichia coli B185]
 gi|299877844|gb|EFI86055.1| putative AI-2 transport protein TqsA [Escherichia coli MS 196-1]
 gi|300400991|gb|EFJ84529.1| putative AI-2 transport protein TqsA [Escherichia coli MS 84-1]
 gi|300414117|gb|EFJ97427.1| putative AI-2 transport protein TqsA [Escherichia coli MS 115-1]
 gi|300416613|gb|EFJ99923.1| putative AI-2 transport protein TqsA [Escherichia coli MS 182-1]
 gi|300449656|gb|EFK13276.1| putative AI-2 transport protein TqsA [Escherichia coli MS 116-1]
 gi|300460736|gb|EFK24229.1| putative AI-2 transport protein TqsA [Escherichia coli MS 187-1]
 gi|300526034|gb|EFK47103.1| putative AI-2 transport protein TqsA [Escherichia coli MS 119-7]
 gi|300528112|gb|EFK49174.1| putative AI-2 transport protein TqsA [Escherichia coli MS 107-1]
 gi|300841518|gb|EFK69278.1| putative AI-2 transport protein TqsA [Escherichia coli MS 124-1]
 gi|301074135|gb|EFK88941.1| putative AI-2 transport protein TqsA [Escherichia coli MS 146-1]
 gi|306909007|gb|EFN39503.1| protein of unknown function UPF0118 [Escherichia coli W]
 gi|309701826|emb|CBJ01138.1| putative membrane protein [Escherichia coli ETEC H10407]
 gi|310337902|gb|EFQ02991.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|313649058|gb|EFS13494.1| hypothetical protein SF2457T_2529 [Shigella flexneri 2a str. 2457T]
 gi|315060907|gb|ADT75234.1| predicted inner membrane protein [Escherichia coli W]
 gi|315136241|dbj|BAJ43400.1| putative transport protein [Escherichia coli DH1]
 gi|315257602|gb|EFU37570.1| putative AI-2 transport protein TqsA [Escherichia coli MS 85-1]
 gi|320178611|gb|EFW53575.1| Putative transport protein [Shigella boydii ATCC 9905]
 gi|320184783|gb|EFW59574.1| Putative transport protein [Shigella flexneri CDC 796-83]
 gi|320197784|gb|EFW72392.1| Putative transport protein [Escherichia coli EC4100B]
 gi|323152898|gb|EFZ39168.1| hypothetical protein ECEPECA14_5257 [Escherichia coli EPECa14]
 gi|323164395|gb|EFZ50198.1| hypothetical protein SS53G_5288 [Shigella sonnei 53G]
 gi|323185861|gb|EFZ71218.1| hypothetical protein ECOK1357_0591 [Escherichia coli 1357]
 gi|323378523|gb|ADX50791.1| protein of unknown function UPF0118 [Escherichia coli KO11]
 gi|323937394|gb|EGB33672.1| TQSA AI-2 transporter tqsA [Escherichia coli E1520]
 gi|323940323|gb|EGB36515.1| TqsA transporter [Escherichia coli E482]
 gi|323962231|gb|EGB57823.1| TqsA transporter [Escherichia coli H489]
 gi|323973765|gb|EGB68939.1| TqsA transporter [Escherichia coli TA007]
 gi|324019469|gb|EGB88688.1| putative AI-2 transport protein TqsA [Escherichia coli MS 117-3]
 gi|331038983|gb|EGI11203.1| AI-2 transport protein TqsA (Transport of quorum-sensing
           signalprotein) [Escherichia coli H736]
 gi|331058867|gb|EGI30844.1| AI-2 transport protein TqsA (Transport of quorum-sensing
           signalprotein) [Escherichia coli TA143]
 gi|331069373|gb|EGI40760.1| AI-2 transport protein TqsA (Transport of quorum-sensing
           signalprotein) [Escherichia coli TA280]
 gi|332101609|gb|EGJ04955.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 344

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 104/328 (31%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ VM + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 126 HYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKFQQMMAR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+    + A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|326487734|dbj|BAK05539.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 644

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 93/247 (37%), Gaps = 14/247 (5%)

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
            +  +E+    LS   S+   S + + +  +  +   A       L++   ++  +  L+
Sbjct: 408 ALQGTEIAKSLLSSGTSVLGGSASLMLSIALRILSGAAE-----VLNFVSQLMVFMWVLY 462

Query: 176 FFY-RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           +    +G   ++Q+  L   +     ++   ++   I S  L    IAI +G +      
Sbjct: 463 YLITVEGGGATEQVIDLLP-VSKQVKERCVEVIDHAISSVLLATAKIAIFQGCLTWLLLK 521

Query: 235 LAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
              V       V T I A+ P   A +S    +  LL +G    A  + +   + +    
Sbjct: 522 FFKVHFVYTATVFTIISALFPILPAWLSSIFAAAQLLTEGRYVLAVMVTVIHLVIMDYGT 581

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTM--GLLGLFIGPVLMALIAVIWKESIMAIKE 351
             ++  + G         T   ++GG+      L G  +GP++M ++  +       +  
Sbjct: 582 TVIQEDIPGYNG----YLTGLSIIGGMTLFPNALEGAILGPLIMTVVIALKNLYTEFVLA 637

Query: 352 NKEKISS 358
           + E++SS
Sbjct: 638 DTEEMSS 644


>gi|109897240|ref|YP_660495.1| hypothetical protein Patl_0915 [Pseudoalteromonas atlantica T6c]
 gi|109699521|gb|ABG39441.1| protein of unknown function UPF0118 [Pseudoalteromonas atlantica
           T6c]
          Length = 346

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 70/212 (33%), Gaps = 2/212 (0%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +    S      ++   + IF II   F   +         SL         + + +   
Sbjct: 136 VMNAVSSLLSSTINGFGNFIFAIILAIFLSINPKWYVNGGLSLVPLQHKNKAQDLLKRCE 195

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
             +    L      +  GL      W  G+   + LG+I A+++ IP  G  ++F    +
Sbjct: 196 TALAGWLLAKLASMVMVGLFTTVGLWALGIDLALILGIIAALLSFIPNLGPLLAFIPAGL 255

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
             ++ G       + +       +    L P L      LP        V     +G+ G
Sbjct: 256 VSILTGIDTL-LYVSILYVGVQTVESYVLTPILQAEIASLPPALVLLVQVLLASMVGMAG 314

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           + +   L  L+ VI  +  +   +  ++  S+
Sbjct: 315 VLLAAPLTVLLIVITNQLYVKRLQGYKEQDSS 346


>gi|239621571|ref|ZP_04664602.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|322691775|ref|YP_004221345.1| transport protein [Bifidobacterium longum subsp. longum JCM 1217]
 gi|239515446|gb|EEQ55313.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|320456631|dbj|BAJ67253.1| putative transport protein [Bifidobacterium longum subsp. longum
           JCM 1217]
          Length = 504

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 70/212 (33%), Gaps = 2/212 (0%)

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           ++T+ +      A         + L+++ +++  ++    G  + +             +
Sbjct: 175 IQTSWVTDFAGTAMSTVGGLFSFLLNLMTVVMTTYYISAAGPKLRRSFCQWLAPNTQRRF 234

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA-MIP-GGA 258
             +  +    I S     +I+A+           +  VP  + L +   +++  IP  G 
Sbjct: 235 LLVWTVAQGQISSFLFSRSILALINATCTAIFLEILHVPYWLPLALFCGVVSQFIPTVGT 294

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            I      ++         A  + ++  +   I +  L P +    + +     F  ++ 
Sbjct: 295 YIGGALPVLFAWGNRGWTYAVAVLVFIIVYQQIENLILSPRISQRTMDINAAVAFLAVLA 354

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
                G  G F+   + A +  I++      +
Sbjct: 355 FGSLFGAFGAFLALPVTASLQAIFRAYTKRYE 386


>gi|170683134|ref|YP_001743653.1| putative transport protein [Escherichia coli SMS-3-5]
 gi|170520852|gb|ACB19030.1| putative permease, PerM family [Escherichia coli SMS-3-5]
          Length = 344

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 104/328 (31%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ VM + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQAIEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 126 HYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKFQQMMVR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+    + A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|312133967|ref|YP_004001306.1| perm [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482123|ref|ZP_07941147.1| hypothetical protein HMPREF0177_00540 [Bifidobacterium sp.
           12_1_47BFAA]
 gi|311773266|gb|ADQ02754.1| PerM [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916482|gb|EFV37880.1| hypothetical protein HMPREF0177_00540 [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 504

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 70/212 (33%), Gaps = 2/212 (0%)

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           ++T+ +      A         + L+++ +++  ++    G  + +             +
Sbjct: 175 IQTSWVTDFAGTAMSTVGGLFSFLLNLMTVVMTTYYISAAGPKLRRSFCQWLAPNTQRRF 234

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA-MIP-GGA 258
             +  +    I S     +I+A+           +  VP  + L +   +++  IP  G 
Sbjct: 235 LLVWTVAQGQISSFLFSRSILALINATCTAIFLEILHVPYWLPLALFCGVVSQFIPTVGT 294

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            I      ++         A  + ++  +   I +  L P +    + +     F  ++ 
Sbjct: 295 YIGGALPVLFAWGNRGWTYAVAVLVFIIVYQQIENLILSPRISQRTMDINAAVAFLAVLA 354

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
                G  G F+   + A +  I++      +
Sbjct: 355 FGSLFGAFGAFLALPVTASLQAIFRAYTKRYE 386


>gi|296269009|ref|YP_003651641.1| hypothetical protein Tbis_1025 [Thermobispora bispora DSM 43833]
 gi|296091796|gb|ADG87748.1| protein of unknown function UPF0118 [Thermobispora bispora DSM
           43833]
          Length = 406

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 50/328 (15%), Positives = 108/328 (32%), Gaps = 21/328 (6%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           I L  ++ +     P++ AL +     P+      +K              V     +PL
Sbjct: 22  ITLAGIHAVSSIIGPIVLALTLVIAVSPLREWLARRKAP------------VWMQIAIPL 69

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + +       +  +    + A Q  I  P +   +   +   + W     +         
Sbjct: 70  VVVLLVL---LSMIAILSLAAAQLAILAPTYADQVTAMLTDLQRWAAERGYG---SEQLN 123

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             L +     I   A       +    S+  +++ L     D    S+ + ++       
Sbjct: 124 KVLSSLDPGKIIELAQSVLSSLVGVLSSLFLIVVLLLAMCLDAPMFSRVIAAIAPERPAL 183

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GG 257
              +         R   +  TI  +   ++  +A ++ GVP  +  GV+  I   IP  G
Sbjct: 184 --AQALTSFTDKTRRYLIVSTIFGLICAILDVAALYVLGVPLPLLWGVLALITNYIPNIG 241

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
             +     ++  L++G       + +   +   +V   ++P  +G  + L    TF  L+
Sbjct: 242 FILGLAPPALLGLLEGGPRTMLLVIVAYVVINVVVQSFIQPKFLGDAVGLSTTATFVSLI 301

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKES 345
                +G LG  +   L  L+  +  +S
Sbjct: 302 MWTWVLGPLGALLAIPLSLLVRALLIDS 329


>gi|311747559|ref|ZP_07721344.1| putative permease [Algoriphagus sp. PR1]
 gi|126575541|gb|EAZ79851.1| putative permease [Algoriphagus sp. PR1]
          Length = 361

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 53/347 (15%), Positives = 119/347 (34%), Gaps = 29/347 (8%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKG---FFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           M N        ++  I++    LK       P++      F   P+ + F  ++      
Sbjct: 1   MKNQYLQNTVNLLLAIVLGAIILKEGDFILVPLVWGAFFAFALNPLSNWFELRRIPR--- 57

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              ++    + L  +  L L Y  + +M  L+ +        +                 
Sbjct: 58  --GLSIFLSILLVSILFLGLMYLMLDQMIGLIGEFPKIGDSLMQ------------KVGN 103

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                           ++   T  I++     + F          II + I L  +Y+D 
Sbjct: 104 YRNDLNELLGVQVPQFDSIFDTEAIEWSKVNETVFATGQSITLAGIIPLYIFLLMYYKD- 162

Query: 182 FSISQQLDSLGEHLFPAYWK--KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
                 ++ L +    +  +    +    KVI+    G+  +++   L+ G  ++L G+ 
Sbjct: 163 ----FFVEFLFKRSSESNVEVLNWAEETGKVIQHYLGGILKVSVIVALLAGLFFYLIGLK 218

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNI-FNATCLFLWGAIELFIVDKTLR 297
             +   V  A+M +IP  G  IS     +Y+ +  +  F     FL       + +  + 
Sbjct: 219 YFLLFAVFIALMNLIPYVGVFISSFFAILYVFLTTDTLFYPFITFLVLWGIQLLENNIIT 278

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           P +VG  +++  L     ++ G    G+ G+ +   L+ ++ +  + 
Sbjct: 279 PLVVGAHVRVNALAVLLAILIGGWLWGISGMVLFIPLVGVLKITLER 325


>gi|320531096|ref|ZP_08032125.1| hypothetical protein HMPREF9555_02234 [Selenomonas artemidis F0399]
 gi|320136678|gb|EFW28631.1| hypothetical protein HMPREF9555_02234 [Selenomonas artemidis F0399]
          Length = 384

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/351 (11%), Positives = 112/351 (31%), Gaps = 15/351 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             ++   L  L   F  V  A ++         +            +   ++S++     
Sbjct: 38  ALVLRSILQVLYPIFVGVAFAFVLSI----PQEALEKILGRHRQMRSHARSLSIVLSLTG 93

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL-----SHPQ 131
            ++ LF +    + + +  +      G  +P  L ++   +       K++         
Sbjct: 94  GIIMLFLFANAFIPQFIQTLRG---FGTALPEALHEVAAALDGVPTLQKYVVELESVDWN 150

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD---GFSISQQL 188
            +    + +L +   + +                + + +I+ ++F          + Q L
Sbjct: 151 QMMQRVQEYLASGQAEAVYSAVHTTAEFVTMMVETFVGIILGIYFLGTKEMLTRQMRQML 210

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +        +   I  +  +   +   G  + +    + L +   L G+     +  I 
Sbjct: 211 YAFCTRKNADHIAHIGGVFRQKFYAFVCGQMLDSFIFMMGLFTGMILFGISHAAMVSAIV 270

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
               +IP    +   A+    +   +   A    +   +   I    + P ++G  + LP
Sbjct: 271 VFTGLIPMVGGVIGGAIGAVFIFVESPTQALIFIILLIVLHQIDSNFIYPRIMGRSLGLP 330

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            + +F  ++ G    G+LG+ +G  + +    +  E      + KE +  +
Sbjct: 331 EVWSFIAIIVGGGLFGVLGMLLGVPVFSAFYTLLGEYTRNRLKEKEHLPED 381


>gi|160915325|ref|ZP_02077538.1| hypothetical protein EUBDOL_01334 [Eubacterium dolichum DSM 3991]
 gi|158433124|gb|EDP11413.1| hypothetical protein EUBDOL_01334 [Eubacterium dolichum DSM 3991]
          Length = 364

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 43/321 (13%), Positives = 109/321 (33%), Gaps = 27/321 (8%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           PVL  +++ F   P+         +          +SV  ++IV  + +    ++ +   
Sbjct: 47  PVLLGVVVAFFMQPMIDRVQLYLPKR---------LSVFLVYIVFAVIVSLLLVVLVPIF 97

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
             +++   +    +P WL              K++     +     + L+ N +     F
Sbjct: 98  YKQIIECVKM---LPIWLERF-----------KNILESYHIPYDFHSLLERNSLKEGSMF 143

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
                       +      +  FF   D       +  + ++     +        K+I 
Sbjct: 144 VVDTLCSTFSTAMDYGVAYLTGFFISIDVEFWKHCIYKVFKNA--HRFSTFYHTASKIIY 201

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLI 271
              LG  +  +   +       L+G P+     ++ A++ + P  GA I    + I  L+
Sbjct: 202 QYLLGTFLDLLFITVSTWCILSLSGFPNAFVYALLLALLNLFPYIGASIGLVLIVIVALL 261

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
               F    +FL   +   +    ++P +    + +  + +F  +       G+ G+ + 
Sbjct: 262 SYEHFPFLPIFLV-WLLQQLESNVIQPMIFHKTMDVRPILSFAFIFVSDAFFGIPGVILS 320

Query: 332 PVLMALIAVIWKESIMAIKEN 352
           P+  A+  + ++  + A + +
Sbjct: 321 PIFAAIAQIGFRSYLHAKEND 341


>gi|323968669|gb|EGB64074.1| TqsA transporter [Escherichia coli M863]
 gi|327252716|gb|EGE64370.1| hypothetical protein ECSTEC7V_1959 [Escherichia coli STEC_7v]
          Length = 344

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 104/328 (31%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEILVPFILALFIAVILNPLVQHMVRWRVPRVLAVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ VM + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 126 HYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKFQQMMAR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+    + A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|254519809|ref|ZP_05131865.1| permease [Clostridium sp. 7_2_43FAA]
 gi|226913558|gb|EEH98759.1| permease [Clostridium sp. 7_2_43FAA]
          Length = 362

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 54/330 (16%), Positives = 107/330 (32%), Gaps = 20/330 (6%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             PV+  L+ G+   P+      K +       +   + V+ L I+  ++L    +    
Sbjct: 36  MLPVVYGLLFGYILNPLVKFIKRKFKVKEGVAILSTYLLVLALLILASIYLIPIMIDSAV 95

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK-----HLSHPQSLKILSETFLKTNG 145
           ++ +K+ +  Q       WL  I       E+        +++H  +        L    
Sbjct: 96  DITTKIPIYIQETQ---DWLDIILNNESVKEIINTTGTMDNVNHIITQFGTMAVTLLEGS 152

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS- 204
           I +I   +S+   +FL   +SI        +   D   + ++   +   +      K   
Sbjct: 153 ISYIFTISSQIVKLFLGLLISI--------YVLVDKERLIKESKKVTFLILKEKKGKKLI 204

Query: 205 ---RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
              RI   +I +      I +     +      +        L VI  I  MIP   P  
Sbjct: 205 EGVRIYHNMIGAYIGIKAIDSAIIAAMALVLLTIVKSEYAFLLAVIVGITNMIPYFGPFI 264

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
              V     +  +      +FL            L P L+G  + +  L     ++ G  
Sbjct: 265 GEIVGFLFNVFVSPTKGVIVFLVLLALQLFDGWYLDPKLIGDKVGVRPLFIIIAVLIGGG 324

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             G LG+ +     A I V ++  +   ++
Sbjct: 325 FYGALGMLLASPTAATIKVYYERIMKKNED 354


>gi|323169898|gb|EFZ55554.1| hypothetical protein ECLT68_5540 [Escherichia coli LT-68]
          Length = 326

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 43/315 (13%), Positives = 98/315 (31%), Gaps = 22/315 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + IIL  + F      P + AL I     P+    +  +      ++++ T+ VM + ++
Sbjct: 2   LVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVSILMTIIVMAMVLL 61

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L +L        + L             +   L  +   +   +L      +     + 
Sbjct: 62  -LAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLAHYIDPNAAMTLLT 120

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           +     +N +  I         + L+                     +  +   +     
Sbjct: 121 NLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQLPGKFQQMMAR-- 160

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
           P       +     +    +  T I+I  GLV  +      V      G++   +  IP 
Sbjct: 161 PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLAFALNYIPN 220

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ ++       +L+    + A  +     +   +    L P ++G  + L  L  F  
Sbjct: 221 IGSVLAAIPPIAQVLVFNGFYEALLMLAGYLLINLVFGNILEPRIMGRGLGLSTLVVFLS 280

Query: 316 LVGGVRTMGLLGLFI 330
           L+     +G +G+ +
Sbjct: 281 LIFWGWLLGPVGMLL 295


>gi|300939745|ref|ZP_07154388.1| putative AI-2 transport protein TqsA [Escherichia coli MS 21-1]
 gi|300455391|gb|EFK18884.1| putative AI-2 transport protein TqsA [Escherichia coli MS 21-1]
          Length = 344

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 104/328 (31%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ VM + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQAIEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 126 HYIDPNSAMTLLTNLLTRLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKFQQMMVR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+    + A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|331652992|ref|ZP_08353997.1| AI-2 transport protein TqsA (Transport of quorum-sensing
           signalprotein) [Escherichia coli M718]
 gi|331049090|gb|EGI21162.1| AI-2 transport protein TqsA (Transport of quorum-sensing
           signalprotein) [Escherichia coli M718]
          Length = 344

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 45/328 (13%), Positives = 104/328 (31%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ VM + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                      + +     +N +  I         + L+                     
Sbjct: 126 HYIDPKAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     PA      +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKFQQMMAR--PAEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+    + A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|26247848|ref|NP_753888.1| putative transport protein [Escherichia coli CFT073]
 gi|91210812|ref|YP_540798.1| putative transport protein [Escherichia coli UTI89]
 gi|117623787|ref|YP_852700.1| putative transport protein [Escherichia coli APEC O1]
 gi|218558471|ref|YP_002391384.1| transport protein [Escherichia coli S88]
 gi|227886041|ref|ZP_04003846.1| possible inner membrane protein [Escherichia coli 83972]
 gi|237705541|ref|ZP_04536022.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|300989167|ref|ZP_07178899.1| putative AI-2 transport protein TqsA [Escherichia coli MS 45-1]
 gi|331647088|ref|ZP_08348182.1| AI-2 transport protein TqsA (Transport of quorum-sensing
           signalprotein) [Escherichia coli M605]
 gi|26108251|gb|AAN80453.1|AE016761_28 Hypothetical protein ydgG [Escherichia coli CFT073]
 gi|91072386|gb|ABE07267.1| putative transport protein [Escherichia coli UTI89]
 gi|115512911|gb|ABJ00986.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|218365240|emb|CAR02961.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli S88]
 gi|226900298|gb|EEH86557.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|227836970|gb|EEJ47436.1| possible inner membrane protein [Escherichia coli 83972]
 gi|281178672|dbj|BAI55002.1| putative transport protein [Escherichia coli SE15]
 gi|294491865|gb|ADE90621.1| YdgG protein [Escherichia coli IHE3034]
 gi|300407365|gb|EFJ90903.1| putative AI-2 transport protein TqsA [Escherichia coli MS 45-1]
 gi|307553571|gb|ADN46346.1| putative permease [Escherichia coli ABU 83972]
 gi|307626913|gb|ADN71217.1| putative transport protein [Escherichia coli UM146]
 gi|315297396|gb|EFU56675.1| putative AI-2 transport protein TqsA [Escherichia coli MS 16-3]
 gi|323187136|gb|EFZ72451.1| hypothetical protein ECRN5871_4607 [Escherichia coli RN587/1]
 gi|323952585|gb|EGB48457.1| TqsA transporter [Escherichia coli H252]
 gi|323956766|gb|EGB52501.1| TqsA transporter [Escherichia coli H263]
 gi|324006946|gb|EGB76165.1| putative AI-2 transport protein TqsA [Escherichia coli MS 57-2]
 gi|330911408|gb|EGH39918.1| putative transport protein [Escherichia coli AA86]
 gi|331043871|gb|EGI16007.1| AI-2 transport protein TqsA (Transport of quorum-sensing
           signalprotein) [Escherichia coli M605]
          Length = 344

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 104/328 (31%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ VM + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQAIEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 126 HYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKFQQMMAR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+    + A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|84499944|ref|ZP_00998210.1| hypothetical protein OB2597_08389 [Oceanicola batsensis HTCC2597]
 gi|84391878|gb|EAQ04146.1| hypothetical protein OB2597_08389 [Oceanicola batsensis HTCC2597]
          Length = 345

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 48/351 (13%), Positives = 108/351 (30%), Gaps = 34/351 (9%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFT---------SWPIYSSFISKK 55
           M+  +      +  ++   L+  K    PV++A+I  +          S P+   F    
Sbjct: 1   MMIEKATYGTALTLMLGWLLWIGKPVLLPVIAAMISVYVLSTAAAAMQSLPVLGRFPGWA 60

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
             +   +A    + ++ L ++                       +Q    +PR+ S++  
Sbjct: 61  RRTVILIAFALGMGLLFLLVI--------------------NNLSQVAAALPRYESNLDA 100

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
            +  S         P    +   T  + +   ++           +      + ++ + F
Sbjct: 101 LVTRSANLLGIEDEPTWANVRRMTLDRIDVTSWVTPALLSLRGFGVTL---FLVVLYSSF 157

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F    G    + + ++G     +    +   V + I       T +    G +      +
Sbjct: 158 FMAERGSMARKVVIAMGGEEAGSRALLLLSRVNERIGRYLFVKTAVNAILGALCFGIMLV 217

Query: 236 AGVPSHVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
            G+   +   V+ A +  IP    I      V + L   G +  A+ + +        V 
Sbjct: 218 LGIEFALFWAVLIAFLNYIPYIGSIVGVIFPVLLSLAQFGTLLMASVVLVTLTAAQTFVA 277

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L P ++G    L        L       GL G  +   + A + ++  E
Sbjct: 278 AYLEPRMMGRAFNLSPFVVLLALAFWSTLWGLPGALLAVPMTASLVLVLSE 328


>gi|219850335|ref|YP_002464768.1| hypothetical protein Cagg_3493 [Chloroflexus aggregans DSM 9485]
 gi|219544594|gb|ACL26332.1| protein of unknown function UPF0118 [Chloroflexus aggregans DSM
           9485]
          Length = 348

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 41/311 (13%), Positives = 100/311 (32%), Gaps = 15/311 (4%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           +  A ++     PI              +  +  +  + L  + +  L     +E + L 
Sbjct: 39  LFGATLLSLAIAPIAERLAHWHVPRGITVLAVYILGGIVLIAL-IELLIPVIRIEAQALR 97

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
           S+     Q    V  W+S +P            +         S        +  +    
Sbjct: 98  SQGPHLFQ---QVTAWVSGLPV-----------IGSTVLSMHQSTIPNLGQQLGNVIDSV 143

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
            R         L ++ + +  F F  D     + + S          +     + + +  
Sbjct: 144 VRILFGTGGLLLDLLIVTVLSFLFITDPGLPKRLIASWIPAAVQPRLQDFIERLRRRLTR 203

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
                 +IA+   +V      + GVP  + +G++  ++ ++P         +++   +  
Sbjct: 204 WIWAQILIALYFVVVYSIGLSVLGVPFALTIGIVGGLLEIVPYVGGAFALILAVISSLSV 263

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
           + +    + ++  + + +    + P L G  I +        L  G +T G+LG+F    
Sbjct: 264 SPWLVIWVIVFHVVVVELESHVIAPALYGRIIGVHPALMLLALFVGAKTGGVLGVFFAVP 323

Query: 334 LMALIAVIWKE 344
           +  +I    +E
Sbjct: 324 VTVVILACGQE 334


>gi|126699822|ref|YP_001088719.1| hypothetical protein CD2205 [Clostridium difficile 630]
 gi|254975804|ref|ZP_05272276.1| hypothetical protein CdifQC_10854 [Clostridium difficile QCD-66c26]
 gi|255093191|ref|ZP_05322669.1| hypothetical protein CdifC_11124 [Clostridium difficile CIP 107932]
 gi|255101344|ref|ZP_05330321.1| hypothetical protein CdifQCD-6_11094 [Clostridium difficile
           QCD-63q42]
 gi|255307220|ref|ZP_05351391.1| hypothetical protein CdifA_11567 [Clostridium difficile ATCC 43255]
 gi|255314933|ref|ZP_05356516.1| hypothetical protein CdifQCD-7_11312 [Clostridium difficile
           QCD-76w55]
 gi|255517607|ref|ZP_05385283.1| hypothetical protein CdifQCD-_10896 [Clostridium difficile
           QCD-97b34]
 gi|255650718|ref|ZP_05397620.1| hypothetical protein CdifQCD_11076 [Clostridium difficile
           QCD-37x79]
 gi|260683805|ref|YP_003215090.1| hypothetical protein CD196_2069 [Clostridium difficile CD196]
 gi|260687465|ref|YP_003218599.1| hypothetical protein CDR20291_2112 [Clostridium difficile R20291]
 gi|115251259|emb|CAJ69090.1| putative membrane protein [Clostridium difficile]
 gi|260209968|emb|CBA63968.1| putative membrane protein [Clostridium difficile CD196]
 gi|260213482|emb|CBE05179.1| putative membrane protein [Clostridium difficile R20291]
          Length = 388

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/295 (13%), Positives = 99/295 (33%), Gaps = 3/295 (1%)

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                ++   +   +  + + F+    +  +  L + + +   +   +   +  +   + 
Sbjct: 87  RGLGLLLTYATATLILYLFMHFVLPQVIESIVGLANDIPMYVNNATKL---IDKLMTDLN 143

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             E +        +  +       T+ I  +            +  L +I  +  L    
Sbjct: 144 LDEQYFNLAVDKWNEFVTYIIKFVTDLIPILGSMLKNVASSIWNIVLGLIVSVYLLIDKE 203

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +      +   ++      A   +++            G  + +   G++      L  +
Sbjct: 204 KFYGLSKKITYAVFTEKQAARILELTHRSNYTFGRFLGGKILDSFIIGILTFVILTLVKM 263

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + VI  I  +IP   P+     S  +++  +   A  L L   I   I    + P
Sbjct: 264 PYTLLISVIIGITNIIPFFGPLFGAIPSTLIVMFVSPIKAFWLLLIILIIQQIDGNIIGP 323

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            ++G  I +      F L+   + +G +G+ IG  + A+I  I K+ + +  + K
Sbjct: 324 KILGDSIGISAFWILFSLLVAGKLLGFIGMVIGVPMFAVIYSIIKDIVESKLDKK 378


>gi|82702638|ref|YP_412204.1| hypothetical protein Nmul_A1509 [Nitrosospira multiformis ATCC
           25196]
 gi|82410703|gb|ABB74812.1| Protein of unknown function UPF0118 [Nitrosospira multiformis ATCC
           25196]
          Length = 399

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 45/327 (13%), Positives = 110/327 (33%), Gaps = 17/327 (5%)

Query: 11  IMRWMIMFIILVS-LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           I  W+I  ++L+  L+F + FF P+L  +++     P+       +        ++    
Sbjct: 46  IALWIIALVVLLGGLHFAQTFFVPLLFGVLVSNALSPVVDWLERCRVPR-----ILGAAL 100

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD-----IPGGMWASELWT 124
           V+ + +  + ++      +   +V K+           R L       +     A++   
Sbjct: 101 VLVVLLGGVSWVTLSLSGDASLIVEKLPEVAHKLRHSLRTLRSEGPSVLQQVEKAAKELE 160

Query: 125 KHLSHPQSLKILSETFLKTNGID--FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           K           +   + ++  D  ++  F  +   + + +   +  +++  +F    G 
Sbjct: 161 KAAVDAGLKSPAAAVVITSHAEDGAWVKDFLLKQSALLVSFAAQMPVVLLLTYFLLAAGT 220

Query: 183 SISQQLDSLGEHLFPAYWK--KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              ++L  L            +I   V   ++   L + I      ++   A+ L G+  
Sbjct: 221 HFRRKLIKLVGPSLTRKKDAVRILEEVHLQVQRYLLVLIISNTLIAVLTWWAFELYGLEH 280

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
               GV   I+  +P    ++    S    LL  G++  A  +     +    +      
Sbjct: 281 AGVWGVAAGILRFVPYLGTMTILLASGIAGLLQFGSLPLALAIAATAVLISGSIGMLFGT 340

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +L G   ++     F  L+      G+
Sbjct: 341 WLQGRFARVNEAVLFIVLLFFGWLWGV 367


>gi|188587957|ref|YP_001920609.1| hypothetical protein CLH_1215 [Clostridium botulinum E3 str. Alaska
           E43]
 gi|251779651|ref|ZP_04822571.1| putative membrane protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|188498238|gb|ACD51374.1| putative membrane protein [Clostridium botulinum E3 str. Alaska
           E43]
 gi|243083966|gb|EES49856.1| putative membrane protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 323

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 69/175 (39%), Gaps = 6/175 (3%)

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
             +  ++     I  FF   DG  I + +  L         KK      ++    F+   
Sbjct: 141 TGEGIIAYFIGNICAFFILVDGEKIKKLILMLFPSEMIKKIKKQKENFSQM----FMIEI 196

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNA 278
            + +   + +   +++  V ++  LG++  I+ ++P  G  I F  + IY ++  +   A
Sbjct: 197 SLVLISTVEIIGGFFILNVSNYFILGILCGILDVLPYVGTIIVFIPIIIYNIVMKDYLTA 256

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
             L     +   ++ + L    +   + +  L     +  GV   G+LG+ +GP+
Sbjct: 257 FGLMCLYLLVQ-VIREILEAKFLSDKLDIHPLIILISIYIGVEVFGILGILVGPM 310


>gi|301050165|ref|ZP_07197061.1| putative AI-2 transport protein TqsA [Escherichia coli MS 185-1]
 gi|300298114|gb|EFJ54499.1| putative AI-2 transport protein TqsA [Escherichia coli MS 185-1]
          Length = 344

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 104/328 (31%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ VM + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQAIESLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 126 HYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKFQQMMAR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+    + A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|329901094|ref|ZP_08272713.1| putative membrane protein [Oxalobacteraceae bacterium IMCC9480]
 gi|327549232|gb|EGF33817.1| putative membrane protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 360

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 45/326 (13%), Positives = 112/326 (34%), Gaps = 14/326 (4%)

Query: 15  MIMFIILVSLYFLKG---FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           + +  ++ +++ L+    F  P+L  + + +T  P+ +     +        V+ TV VM
Sbjct: 14  LAIIAVVATIFALQSAQKFLIPLLCGIFLAYTLNPLVAWLERCRVPR-----VVGTVLVM 68

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI-PVPRWLSDIPGGMWASELWTKHLSHP 130
            +    +  +      E + ++  +  A+      + R  S  P  +   +     +   
Sbjct: 69  LMLSGSITAVGTTLADEFQSIMQTLPEASHKVARAMLRNESGQPSVIQRMQAAASEIESA 128

Query: 131 QSLKILSETFLKTNGIDF-IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            S    S   L +      +        M  +      + ++  +FF    G +  ++L 
Sbjct: 129 TSGNRSSSRSLPSKEPTVRVSDLLLAGSMGAMGLLGEAVVVLFLVFFLLLSGDTFKRKLV 188

Query: 190 SLGEHLFPAYW--KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
            L             I   +   I+     + +      +++  A+   G+ +  A  V 
Sbjct: 189 KLTGPSLTNKRITVHILDAINSSIQKYMSMLLVTNALLAVLMWIAFRAIGLENAGAWAVA 248

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLVGGPI 305
             ++ +IP  G  +   A  +   ++        L +  ++ +  +V   +  ++ G   
Sbjct: 249 AGLLHVIPYFGPLLLTVAAGLMAFLQFGTLGPVLLVIGSSLGVSTLVGTLVTTWMTGRIA 308

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIG 331
           K+     F  L+      G+ GL +G
Sbjct: 309 KMNPAAVFIALLFWGWLWGVWGLLLG 334


>gi|291516366|emb|CBK69982.1| Predicted permease [Bifidobacterium longum subsp. longum F8]
          Length = 504

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 70/212 (33%), Gaps = 2/212 (0%)

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           ++T+ +      A         + L+++ +++  ++    G  + +             +
Sbjct: 175 IQTSWVTDFAGTAMSTVGGLFSFLLNLMTVVMTAYYISAAGPKLRRSFCQWLAPNTQRRF 234

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA-MIP-GGA 258
             +  +    I S     +I+A+           +  VP  + L +   +++  IP  G 
Sbjct: 235 LLVWTVAQGQISSFLFSRSILALINATCTAIFLEILHVPYWLPLALFCGVVSQFIPTVGT 294

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            I      ++         A  + ++  +   I +  L P +    + +     F  ++ 
Sbjct: 295 YIGGALPVLFAWGNRGWTYAVAVLVFIIVYQQIENLILSPRISQRTMDINAAVAFLAVLA 354

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
                G  G F+   + A +  I++      +
Sbjct: 355 FGSLFGAFGAFLALPVTASLQAIFRAYTKRYE 386


>gi|302552792|ref|ZP_07305134.1| integral membrane protein [Streptomyces viridochromogenes DSM
           40736]
 gi|302470410|gb|EFL33503.1| integral membrane protein [Streptomyces viridochromogenes DSM
           40736]
          Length = 362

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 60/342 (17%), Positives = 116/342 (33%), Gaps = 28/342 (8%)

Query: 9   QGIMRWMIMFIILVSLYFL--------KGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           Q +  W  + +++  + ++        +    PVL AL+      P++   + K     +
Sbjct: 18  QRLAAWCAVLLLVSGVVYVGIRLCDEFRAAVVPVLLALLGTALLGPLHRRLV-KAGVHRS 76

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A +  V+V+ +    +  +    +    E+V+ +  A++                   
Sbjct: 77  VAAALTCVAVVAVVGGAVYIVVAALIDTGDEIVASLKEASRG------------IAEHFG 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
              T       + + L   F  T     I  F S  G       L+++ +   L    RD
Sbjct: 125 AAGTSLDDLASNARELLSKFGGTAASGVISGF-SVVGESIAVAVLALLLVFFFL----RD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
               +  L SL         + ++R   K +     G T+IA+ + L +     L  VP 
Sbjct: 180 SDKAAGALRSLAPRGSADTLEAMARRALKAVEGFMRGTTLIALIDALCITVGLLLLDVPG 239

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
              LG +  + A IP  GA IS     +  L       A  +         +    L+P 
Sbjct: 240 APGLGALVFVGAYIPYLGAFISGAVAVLVALADRGFVIALWVLGVVVAVQVLEGHVLQPA 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAV 340
           +    +++        +  G    G+LG+ +  P+  A   V
Sbjct: 300 IQSRTVQMHPAVVMVAITAGASVAGVLGMLLAVPLTAAAFGV 341


>gi|119898053|ref|YP_933266.1| hypothetical protein azo1762 [Azoarcus sp. BH72]
 gi|119670466|emb|CAL94379.1| conserved hypothetical membrane protein [Azoarcus sp. BH72]
          Length = 376

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 63/204 (30%), Gaps = 6/204 (2%)

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA------SRFGMIFLDYCLSIIF 169
           G    E WT+     +  +I      + +    +P+ A             L        
Sbjct: 122 GPRLHEAWTQMQRGMREYQIGRALLAERDLTALVPQNAEWVERIGGLFSTTLGAIAGFFI 181

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
           ++    +      +    L  L          ++   V   +R+  LG  I  +  G  +
Sbjct: 182 VMFIGLYGAVSPQTYRDGLLYLVPRDSRERAAEVMDEVVDTLRNWLLGTFIKMVVVGTAV 241

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
               WL  +P  +ALG+I   +   P   P+     ++ + +      A  + L      
Sbjct: 242 TIGLWLLDIPLALALGLIAFALEFAPYVGPVLAALPAVLVALALGPQQALSVVLLYLGVQ 301

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTF 313
              +  L P +    +KLP   T 
Sbjct: 302 AAENYVLSPLVDLRSVKLPPALTI 325


>gi|157155130|ref|YP_001462889.1| putative transport protein [Escherichia coli E24377A]
 gi|157077160|gb|ABV16868.1| putative permease, PerM family [Escherichia coli E24377A]
 gi|324119355|gb|EGC13242.1| TqsA transporter [Escherichia coli E1167]
          Length = 344

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 104/328 (31%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ VM + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 126 HYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKFQQMMAR--PVEGMAAIQRAIDCVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+    + A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|71275710|ref|ZP_00651995.1| Protein of unknown function UPF0118 [Xylella fastidiosa Dixon]
 gi|71897834|ref|ZP_00680060.1| Protein of unknown function UPF0118 [Xylella fastidiosa Ann-1]
 gi|170729470|ref|YP_001774903.1| transport protein [Xylella fastidiosa M12]
 gi|71163601|gb|EAO13318.1| Protein of unknown function UPF0118 [Xylella fastidiosa Dixon]
 gi|71732389|gb|EAO34443.1| Protein of unknown function UPF0118 [Xylella fastidiosa Ann-1]
 gi|167964263|gb|ACA11273.1| transport protein [Xylella fastidiosa M12]
          Length = 369

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 47/347 (13%), Positives = 114/347 (32%), Gaps = 20/347 (5%)

Query: 7   NPQGIMRWMIMFIILVS--LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
            PQ  +  +++  + V   L+  +    PVL A+       PI  +    +   +    +
Sbjct: 25  RPQAPLSLVVLATLAVGYTLWATQAVILPVLLAVFFALVGNPILRALGHIRIPRAIGALL 84

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  + +    ++         +         +  A      V R +  +   M  +    
Sbjct: 85  LLCLGISGTVVL--------SVELAGPASEWIQQAPDKIRQVARQVRHLTRPMQQANQAV 136

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           + L+     +   ++      +           M      +S++ +I+  FFF   G  +
Sbjct: 137 ESLARAADGETERQSQTVRTRLYNPYTLL----MDTHKLVISVLGVILLTFFFMVFGEKL 192

Query: 185 SQQLDSLGE--HLFPAYWKKISRIVPKVIRSTFLGMTIIA-IGEGLVLGSAYWLAGVPSH 241
            ++  +L    H        +  +  ++ R       I A +G    +        +   
Sbjct: 193 QRKAIALLPNHHQQRFTASILRNLEHEISRYVLTISVINALVGLIFSVLLLLLSIPLQEA 252

Query: 242 VALGVITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           +  G + A++   P   P+      + I L+       A    L   +   +  + + P 
Sbjct: 253 LLWGTVVALLNFAPYVGPLIGVLLMLLIGLVQFHESSRALLPALLYLMLHTLEGQLITPI 312

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKES 345
           ++G  + +  L     L+      GL+GL +  P+L+ +  V+ +  
Sbjct: 313 ILGHRMAISPLMLIVALLLFGSLWGLIGLLLAVPMLVCIKMVLSRIE 359


>gi|293402100|ref|ZP_06646239.1| sporulation integral membrane protein YtvI [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291304492|gb|EFE45742.1| sporulation integral membrane protein YtvI [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 378

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 49/359 (13%), Positives = 119/359 (33%), Gaps = 17/359 (4%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKEES 58
           +T      I+R++   I+++  Y     +  +  P +    I F   PI   F+   +  
Sbjct: 2   DTEKQRAFIIRFLYFSILMLLFYVFFQYIIPYLLPFILGFFIAFMLRPIIRIFVRLTKGH 61

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
             F +++  +    L  + L +         ++++ K+    Q+ +    +L D      
Sbjct: 62  EKFWSIVIILFFYALLGIILSYCGMKIYFWTQDVLIKIPEWYQNTMEP--FLQD--SFSH 117

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL-------DYCLSIIFMI 171
              +W  +     S        L+     F+   +     I          + L+    I
Sbjct: 118 VQVVWKDYDGAISSAITSIWEGLQNFLSGFVTDLSQNILSILSNLLSSVPKFLLTFFIAI 177

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
            + FFF  D  ++S                 I         + F+    + +     LG 
Sbjct: 178 FSSFFFTSDYHNLSNFFFQQFSPETQKIILSIRYFATHTFLNMFIATIKLMLLTFFELGI 237

Query: 232 AYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
              +  +     + +   +  ++P  G         ++  ++G         L   + + 
Sbjct: 238 GLSILDIKKAWLIALGITVFDVLPVLGTGGIMIPWILFSYVQGQH-KLAIGLLILYLIIT 296

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           ++   + P L+G  + L  L     +  G +  G+ G    P+++ ++  + +E I+ +
Sbjct: 297 LIRNIVEPKLMGKQLGLHPLLMLLCMYAGGKLFGVFGFMCMPMVLLILKNLNEEEIIHL 355


>gi|150021395|ref|YP_001306749.1| hypothetical protein Tmel_1519 [Thermosipho melanesiensis BI429]
 gi|149793916|gb|ABR31364.1| protein of unknown function UPF0118 [Thermosipho melanesiensis
           BI429]
          Length = 331

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 53/155 (34%), Gaps = 1/155 (0%)

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
               K  +   +       G  IIA+  G+++G   W+ G+     LG ++ I   IP  
Sbjct: 166 ERGYKFVKKFYRDFEKFVSGQVIIALFVGIMVGIFSWIFGIKGAFFLGTLSFITDFIPFL 225

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK-TLRPFLVGGPIKLPFLPTFFGL 316
             I  +   + L           + +   I +  ++   L P +      + +      +
Sbjct: 226 GVIIVSIPMLMLGYSSLGIKGIVISILILITVNQIESWILAPKIQSDNFNIHWFVLIISI 285

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           +      G +G+ I    +  I   W E I+  K 
Sbjct: 286 LIFGDIFGFIGILIAIPSLLFIKRYWVEYILGGKR 320


>gi|193064903|ref|ZP_03045979.1| putative permease, PerM family [Escherichia coli E22]
 gi|194425793|ref|ZP_03058349.1| putative permease, PerM family [Escherichia coli B171]
 gi|192927390|gb|EDV82008.1| putative permease, PerM family [Escherichia coli E22]
 gi|194415848|gb|EDX32114.1| putative permease, PerM family [Escherichia coli B171]
 gi|323163328|gb|EFZ49155.1| hypothetical protein ECE128010_0405 [Escherichia coli E128010]
          Length = 344

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 103/328 (31%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ VM + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 126 HYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKFQQMMAR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++      IP  G+ ++       +L+    + A  +     +   +    L P ++G
Sbjct: 226 WGLLAFAFNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|154250157|ref|YP_001410982.1| hypothetical protein Fnod_1482 [Fervidobacterium nodosum Rt17-B1]
 gi|154154093|gb|ABS61325.1| protein of unknown function UPF0118 [Fervidobacterium nodosum
           Rt17-B1]
          Length = 324

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 68/204 (33%), Gaps = 4/204 (1%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF---PAYWKKISR 205
           I           +    S+I M++ +        SI   L      LF   P Y KK   
Sbjct: 119 ISSILLSILNKVVGVLPSLITMLMFILVTMVGIESIKSYLAKNISILFVENPDYGKKFVY 178

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTA 264
            +   IR    G  +++     +      L  +PS + LGV+T +    P  G  IS   
Sbjct: 179 ELFGDIRKYIRGQVLVSFISAFLTTLGLILLNIPSALTLGVLTFLGGFFPFVGLLISAVP 238

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           + ++    G + +   L                P +    +KL +      +      +G
Sbjct: 239 MYLFAFSTGGLKSVIFLTFLLVGVNQAESWIYGPRIQSDNLKLHWFVIILAIFLLGDILG 298

Query: 325 LLGLFIGPVLMALIAVIWKESIMA 348
            +G+ I   ++  +   WK  ++ 
Sbjct: 299 FVGVLIAIPVLLFVRKFWKYYVLK 322


>gi|90417801|ref|ZP_01225713.1| conserved hypothetical membrane protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337473|gb|EAS51124.1| conserved hypothetical membrane protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 417

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 45/353 (12%), Positives = 120/353 (33%), Gaps = 20/353 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL---AVI 65
            G++  + + ++  +L  +     P + +++I     P+ S    +      +L   A +
Sbjct: 36  IGLLSIITLILVGWALQAMSSVVVPFIFSILIALVVAPVDSMVKRRMPRRFGWLGHVAAM 95

Query: 66  ATVSVMCLFIVPLLFL-----------FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
             + V+    +  L+L               + E+  ++S     N  G           
Sbjct: 96  GLIIVILFVFLGGLWLSAQRISEAFPQVSQKIEELAPMISSGSSGNAEGAQGASTAGGET 155

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
               A    T   S   S                I  +AS +    L    S +  ++ +
Sbjct: 156 AAGAAGSSGTSDSSDVYSSVTDQFRGAGGQLGSRIAEYASSYASSVLSSAGSALAAMVLI 215

Query: 175 FFF----YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           FFF      +  +   ++ ++ +    +   +   ++ + +R   L   ++ +    +  
Sbjct: 216 FFFTLLMLIEAPNWRAKVCAVVDPDQRSGVFESLDVIARQLRRYLLIRVVLGLLTAGLYA 275

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIEL 289
           +  W  GV   +   ++  ++  +P    +   A+  +++ ++ +   A  + +   +  
Sbjct: 276 AWLWFFGVDLLLVWAILAFLLNFVPTLGSLVAGALPVVHVYVQQDFRTAVIVGIGILVIE 335

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            I+   + P + G  + +  L     L+      G+ G  +  PV + +I   
Sbjct: 336 QIMGNYVDPQVQGKQLSVSPLVILLVLLVWGWVWGVAGALLAVPVTIGIIVTC 388


>gi|70728833|ref|YP_258582.1| PerM family membrane protein [Pseudomonas fluorescens Pf-5]
 gi|68343132|gb|AAY90738.1| membrane protein, PerM family [Pseudomonas fluorescens Pf-5]
          Length = 356

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 51/348 (14%), Positives = 114/348 (32%), Gaps = 16/348 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + + ++  +++F+   ++  L G  APVL+ +++ +    +  S    +       AV  
Sbjct: 15  DEEAVVLAVLLFLAFTAVLTLGGMLAPVLAGMVLAYLMQGLVVSLERLRL--PGGAAVGL 72

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
             ++         F+    +  +  +             +P  L+     +        H
Sbjct: 73  VFAL---------FMGLLLVFILVVVPLLWHQLITLFNELPGMLAKWQSLLLLLPERYPH 123

Query: 127 LSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           L   + +    E      G    +   F+     + ++  + ++ + I +FFF +D   I
Sbjct: 124 LVSDEQVLQAIEVARGEIGKFGQWALTFSLSSLPLLVNIMIYLVLVPILVFFFLKDRAMI 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY--WLAGVPSHV 242
           S+ + S           +++  + + I +   G  I  +  G V   A+        + +
Sbjct: 184 SRWVISYLPR-ERTLITRVAHEMNRQIANYIRGKVIEIVICGGVTYIAFVALGLNYAALL 242

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           AL V  +++    G   ++     I L   G       L     I   +    L P L  
Sbjct: 243 ALLVGVSVVVPYVGAVVVTVPVALIALFQWGWSDQFIYLMAVYGIIQTLDGNVLVPLLFS 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           G + L  +     ++      G  G+F    L  L   +         
Sbjct: 303 GAVNLHPVAIICAVLLFGGLWGFWGIFFAIPLATLFKAVLDAWPRKDP 350


>gi|315125653|ref|YP_004067656.1| hypothetical protein PSM_A0553 [Pseudoalteromonas sp. SM9913]
 gi|315014167|gb|ADT67505.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913]
          Length = 349

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 47/339 (13%), Positives = 111/339 (32%), Gaps = 16/339 (4%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           +   + + L+ L      +   ++ G     + S            L ++ T +V+ L I
Sbjct: 20  LAIGLFMLLWQLSYVLLLIFGGILFGVFLIGLASLLQRWLPLPRWGLVMLVTATVLGLLI 79

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +    +    M ++ +L  ++         V +    + G  W   L        Q   +
Sbjct: 80  LAGYLVGPAIMDQLLQLREQITGG------VKQLEGYLKGKEWGEALLQWAQGQWQQAPL 133

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                +            S            I  ++   F+         + L  L    
Sbjct: 134 SPRKLMGE---------VSGVFSTLFGSLADIFVILFIGFYLALHPEPYKKGLLFLFPSD 184

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   V   ++   +G     I  GL+     WL  +   +AL ++  +++ +P
Sbjct: 185 KRRRINEVMHSVYYALKLWLMGRATSMIVVGLLTALGLWLIDMKLIMALALLAGLLSFVP 244

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI+    ++ + +  +   A  + +   +   +    + PF+    + LP      G
Sbjct: 245 FIGPIAALIPAVLVALLNSPTQAAYVLVVYGVVQVLESNVITPFVQRTAVALPPAVMLGG 304

Query: 316 LVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENK 353
            +      G+ GL +  P+L+++I  +    I  + + K
Sbjct: 305 QLLMGAMFGIHGLALSTPLLVSIIVTVQMLYIRNVLKEK 343


>gi|312959557|ref|ZP_07774074.1| permease [Pseudomonas fluorescens WH6]
 gi|311286274|gb|EFQ64838.1| permease [Pseudomonas fluorescens WH6]
          Length = 356

 Score = 56.4 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 50/343 (14%), Positives = 112/343 (32%), Gaps = 16/343 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + + ++  +++F+   ++  L G  APVL+ +++ +    + ++    +       AV  
Sbjct: 15  DEEAVVLAVLLFLAFTAVLTLGGMLAPVLAGMVLAYLMQGLVTTLERLRL--PGGAAVGL 72

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
             ++         F+    +  +  L             +P  L+     +        H
Sbjct: 73  VFAL---------FMGLLVVFIVVVLPLLWHQLITLFNELPGMLAKWQSLLLLLPERYPH 123

Query: 127 LSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           L   + +    E      G    +   F+     + ++  + ++ + I +FFF +D   I
Sbjct: 124 LVSDEQVLQAIEVARGEIGKFGQWALTFSLSSLPLLVNIMIYLVLVPILVFFFLKDRAMI 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + +         A   +++  + + I +   G  I  I  G V   A+    +     L
Sbjct: 184 GRWVSGYLPR-ERALITRVAEEMNRQIANYIRGKVIEIIICGGVTYIAFIALDLNYAALL 242

Query: 245 GVITAIMAMIPGGAPISFTAVS--IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            ++  I  ++P    +  T     I L   G       L     I   +    L P L  
Sbjct: 243 ALLVGISVVVPYVGAVVVTVPVTLIALFQWGWSDQFIYLMAVYGIIQTLDGNVLVPLLFS 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             + L  +     ++      G  G+F    L  L   +    
Sbjct: 303 EAVNLHPVAIICAVLLFGGLWGFWGVFFAIPLATLFKAVLDAW 345


>gi|225024450|ref|ZP_03713642.1| hypothetical protein EIKCOROL_01325 [Eikenella corrodens ATCC
           23834]
 gi|224942831|gb|EEG24040.1| hypothetical protein EIKCOROL_01325 [Eikenella corrodens ATCC
           23834]
          Length = 357

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 52/329 (15%), Positives = 126/329 (38%), Gaps = 10/329 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           ++   +P + A ++ +   P+       +   +T  A++  V  + L ++ LL +    +
Sbjct: 29  MRDVLSPFVVAAVLAYILNPLVEKLCRHRVRRAT-AAMLVMVFALLLLVLLLLIVVPMLV 87

Query: 87  LEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            +   L+ K+  L          W++ + G  W             S  +         G
Sbjct: 88  QQFGSLLDKLPELVAFAQNKALPWINHMLGTHWV------LNDQSVSKWLSGHVGSVQAG 141

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +          G   +    +++ +   L++F  D    ++ ++++    + A + +I  
Sbjct: 142 LSKALPALLEQGGSLVTSLGNLMVLPFLLYYFLLDWSRWAEGINTMIPRRYLAAYTRIGG 201

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +  V+     G  I+ +  GL+ G    LAG+ S  A+G++  ++  +P     +   +
Sbjct: 202 NMDTVLGEFLRGQLIVMLIMGLLYGLGLMLAGLESGFAIGMVAGLLVFVPYLGAFTGLLL 261

Query: 266 SIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
           +    +         + +W    +  F+    + P +VG  I L      F L+     +
Sbjct: 262 ATMAALLQFGTWQGLITVWAVFAVGQFLESFFITPKIVGDRIGLSPFWVIFALMAFGSLL 321

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           G +G+ +   L A+  V+ +E + A  ++
Sbjct: 322 GFVGMLLALPLAAVTLVLLREGVAAYMDS 350


>gi|322514984|ref|ZP_08067996.1| PerM family permease [Actinobacillus ureae ATCC 25976]
 gi|322119037|gb|EFX91201.1| PerM family permease [Actinobacillus ureae ATCC 25976]
          Length = 349

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 46/314 (14%), Positives = 100/314 (31%), Gaps = 20/314 (6%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L +L I     PI      ++      +A+   + ++ L  + L  +    + E  
Sbjct: 32  VVPFLLSLFIAIICSPIIKFMTIRRI--PLGIAISLLLGLIVLVFLFLTGMVNNAIQEFT 89

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
             + +                 +        ++     +   + I  E  L       + 
Sbjct: 90  ASIPQYK---------------LLLTARLQTIFALVNEYQLPISIGQEDILSKFDPSAVM 134

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI-SRIVPK 209
              SR  + F     +I  + + + F   +      +L            +K     V K
Sbjct: 135 NLVSRLLLGFSGVLSNIFVLFLVVIFMLLESPMAKYKLALALSPDNDLSNEKYYIDQVLK 194

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIY 268
            +       T+++   GL +     +  V   V  GV+  ++  IP  G+ ++   + + 
Sbjct: 195 GVIGYLGIKTVVSALTGLSVWILLMILNVQYAVLWGVLAFLLNYIPNIGSFLAGIPIVLQ 254

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
            L+         +         +    L P ++G  + L  L  F  L+     +G +G+
Sbjct: 255 ALLLNGFSVGLAVLAGIVGVNMLFGNVLEPKMMGKRLGLSTLVVFLSLLFWGWLLGTVGM 314

Query: 329 FIG-PVLMALIAVI 341
            +  P+ MAL   +
Sbjct: 315 LLSVPLTMALKIAL 328


>gi|293409912|ref|ZP_06653488.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291470380|gb|EFF12864.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 344

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 105/328 (32%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ VM + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 126 HYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKFQQMMAR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+    ++A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYDALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|149194444|ref|ZP_01871541.1| predicted permease [Caminibacter mediatlanticus TB-2]
 gi|149135619|gb|EDM24098.1| predicted permease [Caminibacter mediatlanticus TB-2]
          Length = 313

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 62/327 (18%), Positives = 128/327 (39%), Gaps = 36/327 (11%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +FII+  L FL      ++ ++ + F   PI+  F +K                      
Sbjct: 7   IFIIIFGLKFLSPILIYLILSIFLSFLLIPIFKFFENKG--------------------- 45

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L  +  Y +     L+  ++++      +  ++ + P  ++ S+L    + +  SL+ +
Sbjct: 46  -LPSIISYTLTISSFLLIFLIISILIKTSLDEFIKNYP--IYESKLHNLIIQYKDSLEKI 102

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           +  F   N I FI +F  + G I   + + +I +   LF    +     Q+++ L     
Sbjct: 103 NFNFQDINIIPFIQKFLGKAGSIVSGFIIVVIGVSFLLF----ESNIFHQKINLLS---- 154

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                KI     K ++  F+     ++  G+ +G   +   +     LG +  I+  IP 
Sbjct: 155 --NNPKIFIEFYKSVQKYFVIKFFTSLLTGICVGIMVYSFKIDYAFLLGFLAFILNFIPV 212

Query: 257 -GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ I+        LI   I +A  + ++  I    +   L P ++G  + L     FF 
Sbjct: 213 VGSIIAAIPGIFLALINYGIESAIYVSIFYVIINISISNILEPKIMGNGLNLSPAVIFFS 272

Query: 316 LVGGVRTMGLLGLFIG-PVLMALIAVI 341
           L+      G++G F   P+ ++L   +
Sbjct: 273 LIFWGYIFGIVGTFFAVPLTLSLKLAL 299


>gi|331657566|ref|ZP_08358528.1| AI-2 transport protein TqsA (Transport of quorum-sensing
           signalprotein) [Escherichia coli TA206]
 gi|331055814|gb|EGI27823.1| AI-2 transport protein TqsA (Transport of quorum-sensing
           signalprotein) [Escherichia coli TA206]
          Length = 344

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 104/328 (31%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ VM + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQAIEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 126 HYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKFQQMMAR--PVEGMAAIQHAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+    + A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|156397366|ref|XP_001637862.1| predicted protein [Nematostella vectensis]
 gi|156224978|gb|EDO45799.1| predicted protein [Nematostella vectensis]
          Length = 811

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 81/216 (37%), Gaps = 6/216 (2%)

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           L     + +     +  N +  +       G   L+  LS++  + ALF+         +
Sbjct: 590 LLESVWMIVKGNVSMVINLVTMVLSLVFFSGTYVLNAGLSMVVFMTALFYLLSTSGDQYR 649

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            ++  G+ +  +        + K IR  F     +A   GL     + + GV        
Sbjct: 650 PVEWFGQ-MSASGTAGFGESLYKAIRDVFGAALKMATFYGLYTVLTHTIFGVNIVFIPSA 708

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           I A+ +++P  G   +     + L +   +   A  L +   +  ++VD  +   + GG 
Sbjct: 709 IAAVTSVVPFVGTYWAAVPAVLELWLVHEDSVRAIILAVCHVLPTYVVDTAIYSEISGGG 768

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
                  T   + GG+  +GL G  IGP+++  + V
Sbjct: 769 ---HPYLTGLAVAGGIYCVGLEGAIIGPIVLCCLIV 801


>gi|295104648|emb|CBL02192.1| Predicted permease [Faecalibacterium prausnitzii SL3/3]
          Length = 373

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 66/349 (18%), Positives = 128/349 (36%), Gaps = 14/349 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE------SSTFLAVIATVSVMCL 73
           +L     L     P+L+  I+        +    +                I  +S    
Sbjct: 28  VLAFAAKLIDLVLPILAGGILALFINVPMTGLEKRLNRLFGKAKKQPSAKAIHLLSFFIT 87

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
            +  +L L     L + ELV        Q    +PRW + +             L     
Sbjct: 88  LLGVVLVLVLALTLLIPELVQSFHSLYVQIEANIPRWTAYLNAQDADMGWLMNWLEGINW 147

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
            ++L +    T  ID +   A       ++  ++  F +I   +      S+  Q  +L 
Sbjct: 148 EQLLHKV---TASIDTVLVNAVGAVSATVNIAITASFALIISVYMSLSTESLGHQARTLV 204

Query: 193 -EHLFPAYWK---KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +L PA+     K  R+  +   +   G    A+  G+++  A+ +  +P    +GV+T
Sbjct: 205 CAYLKPAHAAGVLKFCRLFRQSFANFLTGQCSEAVILGVLMALAFSVFKIPYGSLVGVLT 264

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           AI A+IP    +    VS++L++  +   A    +      F+ ++ + P +VG  + L 
Sbjct: 265 AICAIIPYVGALISCVVSVFLVLLVDPVLAVRCLIVYLAVQFVENQFIYPRVVGKSVGLS 324

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
            L T    + G +  G++G+     L A++  + KE        KE + 
Sbjct: 325 PLYTLIAAMIGGKLFGIIGIIFFIPLTAVVIELVKEDTFRRLRAKEPLQ 373


>gi|331683106|ref|ZP_08383707.1| AI-2 transport protein TqsA (Transport of quorum-sensing
           signalprotein) [Escherichia coli H299]
 gi|331079321|gb|EGI50518.1| AI-2 transport protein TqsA (Transport of quorum-sensing
           signalprotein) [Escherichia coli H299]
          Length = 344

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 104/328 (31%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ VM + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLKAIEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 126 HYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKFQQMMAR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+    + A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|157691213|ref|YP_001485675.1| hypothetical protein BPUM_0420 [Bacillus pumilus SAFR-032]
 gi|157679971|gb|ABV61115.1| hypothetical membrane protein [Bacillus pumilus SAFR-032]
          Length = 340

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 53/312 (16%), Positives = 106/312 (33%), Gaps = 21/312 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G+ R+ +  ++  +LY L+G    +L   I  F    +                      
Sbjct: 12  GVKRFSVFVVLATALYLLRGMMNLILLTFIFTFLMNRLEEVIRGFLSRFLKIGQKSVITI 71

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +  L    L F  +  +  + + V ++    +        ++D P  +   ++ T     
Sbjct: 72  LYILLAGGLTFGGFVFVPIIAKQVEQLFHLGKK-------IADHPQNLPFFDVITNVFGD 124

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            +      + F      +F+  + + F      + + +I  +I   FF  +   + Q ++
Sbjct: 125 FKISAYFEKGF------NFLYTYLTDFST----FSIQVIMSLILSMFFLFEKERLIQFMN 174

Query: 190 SLGEHLFPAYWKKIS---RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
                    ++ +I+   R   +          IIA    ++   A  + G P    L V
Sbjct: 175 KFKTSKISVFYHEIAFFGRKFSRTFGKVLEAQFIIATVNCVLTTIALGIMGFPQLFGLAV 234

Query: 247 ITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +  ++ +IP  G  IS   +SI     G       + L   I   I    L P L+    
Sbjct: 235 MVFLLGLIPVAGVVISLIPLSIIAYTLGGGMYVLYIVLVIVIIHAIEAYFLNPKLMSAKT 294

Query: 306 KLPFLPTFFGLV 317
           +LP   TF  L+
Sbjct: 295 ELPIFFTFIVLI 306


>gi|73670492|ref|YP_306507.1| hypothetical protein Mbar_A3035 [Methanosarcina barkeri str.
           Fusaro]
 gi|72397654|gb|AAZ71927.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 349

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 52/330 (15%), Positives = 109/330 (33%), Gaps = 28/330 (8%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             I+ + +  +      V  ++       P+      +       L+VI  + +  L I+
Sbjct: 24  AVILTIGMREIASILTVVFFSVFTALIFTPLVRWLKQR--GIPGVLSVILVILLFTLIIL 81

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L  +     L+    +                          +EL      +  S +  
Sbjct: 82  VLGIIVVEAALQFGSQIPIYQA-------------------QLTELVNNLAKYVPSYEEF 122

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG--EH 194
           S   +  + +       +      ++   ++  +I+   F   D  +  +++DS    + 
Sbjct: 123 SIQSILRSMVSITISLMANTVNGIVNAGATVGIIIVTAAFLLIDAANNPEKVDSEIGKQS 182

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                  K S+ + K I        I AI   L+L       G+   +  GV+  +++ I
Sbjct: 183 ELRLRMSKFSKKLVKFIVIRAEINLITAITIALLLFIG----GIDYAILWGVLIFLLSYI 238

Query: 255 P-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P  G  I+     +  L K     A  + L   I   + +  L P L+G  ++L     F
Sbjct: 239 PYIGLVIASVPPIMLALFKYGPLGAIAVILIIVIVDALAENVLFPSLMGKGLQLSPAFLF 298

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             L+      GL G+ +   L  ++ +I +
Sbjct: 299 LALLYWNFVFGLGGVLLSIPLTIVLKIILE 328


>gi|182680787|ref|YP_001828947.1| hypothetical protein XfasM23_0216 [Xylella fastidiosa M23]
 gi|182630897|gb|ACB91673.1| protein of unknown function UPF0118 [Xylella fastidiosa M23]
 gi|307579253|gb|ADN63222.1| hypothetical protein XFLM_06455 [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 369

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 46/345 (13%), Positives = 113/345 (32%), Gaps = 20/345 (5%)

Query: 7   NPQGIMRWMIMFIILVS--LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
            PQ  +  +++  + V   L+  +    PVL A+       PI  +    +   +    +
Sbjct: 25  RPQAPLSLVVLATLAVGYTLWATQAVILPVLLAVFFALVGNPILRALGHIRIPRAIGALL 84

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  + +    ++         +         +  A      V R +  +   M  +    
Sbjct: 85  LLCLGISGTVVL--------SVELAGPASEWIQQAPDKIRQVARQVRHLTRPMQQANQAV 136

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           + L+     +   ++ +    +           M      +S++ +I+  FFF   G  +
Sbjct: 137 ESLARAADGETERQSQIVRTRLYNPYTVL----MDTHKLVISVLGVILLTFFFMVFGEKL 192

Query: 185 SQQLDSLGE--HLFPAYWKKISRIVPKVIRSTFLGMTIIAIG-EGLVLGSAYWLAGVPSH 241
            ++  +L    H        +  +  ++ R       I A+               +   
Sbjct: 193 QRKAIALLPNHHQQRFTASILRNLEHEISRYVLTISVINALVGLIFSGLLLLLSIPLQEA 252

Query: 242 VALGVITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           +  G + A++   P   P+      + I L+       A    L   +   +  + + P 
Sbjct: 253 LLWGTVVALLNFAPYVGPLIGVLLMLLIGLVQFHESSRALLPALLYLMLHTLEGQLITPI 312

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWK 343
           ++G  + +  L     L+      GL+GL +  P+L+ +  V+ +
Sbjct: 313 ILGHRMAISPLMLIVALLLFGSLWGLIGLLLAVPMLVCIKMVMSR 357


>gi|300959061|ref|ZP_07171156.1| putative AI-2 transport protein TqsA [Escherichia coli MS 175-1]
 gi|300314320|gb|EFJ64104.1| putative AI-2 transport protein TqsA [Escherichia coli MS 175-1]
          Length = 343

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 104/328 (31%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ VM + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 126 HYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKFQQMMAR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+    + A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|82544032|ref|YP_407979.1| transport protein [Shigella boydii Sb227]
 gi|81245443|gb|ABB66151.1| putative transport protein [Shigella boydii Sb227]
 gi|332095617|gb|EGJ00629.1| hypothetical protein SB359474_1766 [Shigella boydii 3594-74]
          Length = 344

 Score = 56.4 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 46/328 (14%), Positives = 109/328 (33%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ VM + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +                  LSI  +++ + F   +   
Sbjct: 126 HYIDPNAAMTLLTNLLTQLSNAM------------------LSIFLLLLTVLFMLLEVPQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKFQQMMAR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+    + A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|229196166|ref|ZP_04322916.1| UPF0118 membrane protein [Bacillus cereus m1293]
 gi|228587324|gb|EEK45392.1| UPF0118 membrane protein [Bacillus cereus m1293]
          Length = 337

 Score = 56.4 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 54/324 (16%), Positives = 116/324 (35%), Gaps = 25/324 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +G  R++++ I+ + LY LK     +L   I+ F           K + +   +    
Sbjct: 9   RSRGFQRFLVLIILALVLYGLKSMINLILITFILTFLMDRFQRFISKKLKVNRKIVIACL 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++      L        +++ +L+ +  L  Q+           P      +     
Sbjct: 69  YIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQN-----------PPDNEIIKYALST 117

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           ++  +  K + +      G+D I +  +  G + L   LS+I  +  L     +   I  
Sbjct: 118 INGMEVSKYIEQ------GVDVIYQSIANIGKVSLQILLSLILSLFFL----LEKERIIT 167

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 E     ++++I+    +  RS         +IA+   ++   A  + G P  + 
Sbjct: 168 FTSKFKESKLKIFYEEIAYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLLV 227

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L V+  ++ +IP  G  IS   +SI     G +     + ++  +   +    L P  + 
Sbjct: 228 LAVMIFLLGLIPVAGVIISLFPLSIIAYNVGGVMYVVYILIFITVIHALESYFLNPKFMS 287

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLL 326
               LP   TF  L+     +G+ 
Sbjct: 288 AKTNLPIFYTFIILIFSEHFLGIW 311


>gi|172035592|ref|YP_001802093.1| hypothetical protein cce_0676 [Cyanothece sp. ATCC 51142]
 gi|171697046|gb|ACB50027.1| hypothetical protein cce_0676 [Cyanothece sp. ATCC 51142]
          Length = 340

 Score = 56.4 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 45/316 (14%), Positives = 101/316 (31%), Gaps = 22/316 (6%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           +    P+  A  I    +P+ +          + + V+  +      +V L         
Sbjct: 28  QPISMPLAFAFFIVVLVYPLQNRLEQNLPRWLSLIIVLLVLGG----VVALAQGALSLSA 83

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           E+ E              VP++L  +      ++ W  +   P        + +    I 
Sbjct: 84  EIIE------------PKVPQYLDRLEQMWETAQSWANNYGLP---VPHFNSQINNTPIQ 128

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
              +  S F    +     +I  I  L     +     +++          +        
Sbjct: 129 LTQQAISGF-QTVISTISLLILTISLLILLLLEVSQYKRKVQQAFSSRTSQHIINAVGNT 187

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVS 266
            + +R     MT   I  G++ G    + GV   +   +I  I+  +P  G+ I+    +
Sbjct: 188 SEKLRRYLTVMTFTCILTGVLTGIWCLIIGVDLALVWALIAFILNYVPTLGSIIAVIPPT 247

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           +  ++   +       +   I   I+   + P + G  ++L      F +V      G+ 
Sbjct: 248 VIAILFNGVPRGIATVIGLGIIQVIMGNFVDPRIQGKTLQLSPFIALFSIVFWGWIWGIP 307

Query: 327 GLFIG-PVLMALIAVI 341
           G  +G P+ +++I   
Sbjct: 308 GAILGIPMTISIILFC 323


>gi|170723139|ref|YP_001750827.1| hypothetical protein PputW619_3978 [Pseudomonas putida W619]
 gi|169761142|gb|ACA74458.1| protein of unknown function UPF0118 [Pseudomonas putida W619]
          Length = 356

 Score = 56.0 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 50/344 (14%), Positives = 123/344 (35%), Gaps = 18/344 (5%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + + ++  +++F+   ++  L G  APVL+ +++ F    + ++    +  +        
Sbjct: 15  DEEAVVLAVLLFLAFTAVLTLGGMLAPVLAGMVLAFLMQGLVNALERLRVPTR------- 67

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            ++VM +F + +  L  + ++ +  L  +++        +P  L      +        H
Sbjct: 68  -LAVMVVFALFMSALAVFLLVLVPLLWHQLITLFNE---LPGMLGKWQSLLLLLPERYPH 123

Query: 127 LSHPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           L   + +    E+     G    +   F+     + +   + ++ + I +FFF +D   I
Sbjct: 124 LVSDEQVLHAIESVRGEIGKFGQWALSFSLSSLPLLVSAMIYLVLVPILVFFFLKDREQI 183

Query: 185 SQQLDSLGEH---LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            + +         L      +++R +   IR   + + I  I   +   S          
Sbjct: 184 GRWVSGYLPRQRTLLNRVGTEMNRQIANYIRGKGIEILICGIATYIAFISLGLNYAALLA 243

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           + +G+   +  +      +  T ++++    G+ F    L    AI   +    L P L 
Sbjct: 244 LLVGLSVVVPYVGAVVVTVPVTLIALFQWGWGDQF--IYLMTVYAIIQALDGNVLVPLLF 301

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
              + L  +     ++      G  G+F    L  LI  +    
Sbjct: 302 SEAVSLHPVAIICAVLLFGGLWGFWGIFFAIPLATLIKAVLDAW 345


>gi|260843906|ref|YP_003221684.1| putative inner membrane protein [Escherichia coli O103:H2 str.
           12009]
 gi|257759053|dbj|BAI30550.1| predicted inner membrane protein [Escherichia coli O103:H2 str.
           12009]
          Length = 344

 Score = 56.0 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 103/328 (31%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ VM + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 126 HYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKFQQMMAR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++      IP  G+ ++       +L+    + A  +     +   +    L P ++G
Sbjct: 226 WGLMAFAFNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|326625322|gb|EGE31667.1| UPF0118 inner membrane protein yhhT [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 339

 Score = 56.0 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 47/321 (14%), Positives = 115/321 (35%), Gaps = 22/321 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + IIL  ++   G    +L AL       P+ + FI +  +       +A   V
Sbjct: 4   LLKLASLVIILAGIHAAAGIIVQLLLALFFAIVLNPLVTWFIRRGVKRP-----LAITIV 58

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L       + E ++ +   ++               +    L  + L   
Sbjct: 59  VVVMLIVLTALVGVLAASLNEFIAMLPKYSKE--------------LTRKVLHLQELMPF 104

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    D I  F +           SI+ +++ + F   +   +  +L  
Sbjct: 105 LNLHMSPERMLRGMDSDKIMLFTTTLMTGVSGAMASIVLLVMTVVFMLFEVRHVPYKL-R 163

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G ++     L  +   +  GV+  +
Sbjct: 164 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGAIIWLGLALMDIQFALMWGVLAFL 222

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  G+ IS     I  L+    +    +     +   ++   + P ++G  + +  
Sbjct: 223 LNYVPNIGSVISAVPPMIQALLFNGFYECVLVGALFLLVHMVIGNIMEPRMMGHRLGMST 282

Query: 310 LPTFFGLVGGVRTMGLLGLFI 330
           L  F  L+     +G +G+ +
Sbjct: 283 LVVFLSLLVWGWLLGPVGMLL 303


>gi|306813437|ref|ZP_07447627.1| putative transport protein [Escherichia coli NC101]
 gi|305853182|gb|EFM53622.1| putative transport protein [Escherichia coli NC101]
          Length = 344

 Score = 56.0 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 43/328 (13%), Positives = 103/328 (31%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ VM + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQAIEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 126 HYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     P       +     +    +  T I+I  G V  +      V     
Sbjct: 168 LPGKFQQMMAR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGQVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+    + A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|29654244|ref|NP_819936.1| hypothetical protein CBU_0923 [Coxiella burnetii RSA 493]
 gi|29541510|gb|AAO90450.1| hypothetical membrane spanning protein [Coxiella burnetii RSA 493]
          Length = 376

 Score = 56.0 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 53/333 (15%), Positives = 108/333 (32%), Gaps = 29/333 (8%)

Query: 14  WMIMFIILVSLYFLKGF-FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
            +I++++ +  +       A VL  +II  T+  +Y     KK  S  F   +A V+   
Sbjct: 48  VLIVYLLFIGRFLFLPLTIALVLWYVIISLTA--LYQRIPFKKRLSHGFALFLAIVTTAI 105

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
                L   F      + +L+       Q    + RW + + GG              ++
Sbjct: 106 F----LYLFFLMFTQSLPDLIEAAPAYQQKLYQLLRWFNVLVGGGRLYLGQLMRQIDLKN 161

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           +       L                        +   +I+ LFF   +  S +Q+L  L 
Sbjct: 162 IFSELPIILSLTAA-------------------NFTLVIVYLFFLLLEHRSFNQKLKLLC 202

Query: 193 EHLFP-AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                     +I + + K + + F   T+I++   L+         + +         ++
Sbjct: 203 HSSKKYKKVTEIIKEITKDVNNYFKVKTLISLITALLSYFVLLEFKINNAEFWSTFVFLL 262

Query: 252 AMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
             IP   P+      + +       +     L +       I+   + P  +G  + L  
Sbjct: 263 NYIPYIGPLIAVVTLLIVASIQVTQLVPFIFLGILLTAIQIILGNFVEPKWLGVRLNLSP 322

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L     L       G +GLF+   +M ++ +I 
Sbjct: 323 LVILLSLAFWGSIWGFIGLFLSVPIMVILTIIL 355


>gi|187934691|ref|YP_001885462.1| hypothetical protein CLL_A1264 [Clostridium botulinum B str. Eklund
           17B]
 gi|187722844|gb|ACD24065.1| putative membrane protein [Clostridium botulinum B str. Eklund 17B]
          Length = 336

 Score = 56.0 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 68/175 (38%), Gaps = 6/175 (3%)

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
             +  ++     I  FF   DG  I   +  L         KK      ++    F+   
Sbjct: 154 TGEGIIAYFIGNICAFFILVDGEKIKNLILMLFPSEMIKKIKKQKENFSQM----FMIEI 209

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNA 278
            + +   L +   +++  V ++  LG++  I+ ++P  G  I F  + IY ++  +   A
Sbjct: 210 SLVLISTLEIIGGFFILNVSNYFILGILCGILDVLPYVGTIIVFIPIIIYNIVMKDYLTA 269

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
             L     +   ++ + L    +   + +  L     +  GV   G+LG+ +GP+
Sbjct: 270 FGLMCLYLLVQ-VIREILEAKFLSDKLDIHPLIILISIYIGVEVFGILGILVGPM 323


>gi|153810357|ref|ZP_01963025.1| hypothetical protein RUMOBE_00738 [Ruminococcus obeum ATCC 29174]
 gi|149833536|gb|EDM88617.1| hypothetical protein RUMOBE_00738 [Ruminococcus obeum ATCC 29174]
          Length = 415

 Score = 56.0 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 57/135 (42%)

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           ++   G++I+  G G ++ +     G  +        A  A+IP        AV ++L+ 
Sbjct: 257 QAIKWGISILGSGAGNMMNTTMSALGSIASGLATFFIAFTALIPIFGAFIGCAVGVFLIF 316

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
             +   A    +   +   I    + P +VGG + LP +     +  G   MG++G+ I 
Sbjct: 317 MVSPKQAVLFIIIFLLLQQIEGNLIYPHVVGGSVGLPSIWVLAAVTIGGNLMGIVGMLIF 376

Query: 332 PVLMALIAVIWKESI 346
              +++   I++E +
Sbjct: 377 IPTVSVFYTIFREYV 391


>gi|126696270|ref|YP_001091156.1| permease [Prochlorococcus marinus str. MIT 9301]
 gi|126543313|gb|ABO17555.1| Predicted permease [Prochlorococcus marinus str. MIT 9301]
          Length = 347

 Score = 56.0 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 51/348 (14%), Positives = 115/348 (33%), Gaps = 5/348 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N     + +++ I L+ ++ LK F   ++ AL+I      + +      +   +    +
Sbjct: 1   MNSLSYFKLVVILITLLIVWTLKDFLLLIICALVISNIVCNLSNQIQKGLKIPRSISLFL 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKV----VLANQHGIPVPRWLSDIPGGMWASE 121
              ++  +     + +    + E  E++ ++       N          + +  G   SE
Sbjct: 61  VLAAISVIIFTIFIIVLPPFIKEFNEILVEIPNGLSKINTLINTNLNKFNSLFYGEQ-SE 119

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 S   ++  + +       I    +             L +IF++        + 
Sbjct: 120 NVIDIFSLINNVVTIPDVSTIAKAIQESFKNLINIAGNLGSGLLRLIFVLAVSLMISIEP 179

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               + +  L    +   ++ I       + +    M I ++  GL+      +  V   
Sbjct: 180 KQYKENILLLIPKNYRNKFRNILEKCNIALANWTFSMVISSLSVGLLSLIVLSILDVKYV 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           V+  +I  ++ +IP   P+      I + +  N +    +     I   I    + P ++
Sbjct: 240 VSNALIAMVLNIIPNIGPVISGIFPISIALLDNFWKPLAVLGSYVIIQNIESYIIMPSIM 299

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
                L    T     G     G LGL +   L  +I V+ KES   I
Sbjct: 300 KKKANLLPGLTLISQFGFTFIFGPLGLILSLPLAVVIQVLIKESFKDI 347


>gi|223986476|ref|ZP_03636477.1| hypothetical protein HOLDEFILI_03792 [Holdemania filiformis DSM
           12042]
 gi|223961538|gb|EEF66049.1| hypothetical protein HOLDEFILI_03792 [Holdemania filiformis DSM
           12042]
          Length = 278

 Score = 56.0 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 72/211 (34%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +    S   +   ++ +  +  +  L    +    + + + +L             R   
Sbjct: 45  VINNISAITVGLSNWVMGFMLSLYLLSSKEKFIRQLKKLIGALLPLSAANRVLAWGRKTN 104

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           +   S   G  + A    ++   +  L  +P  + +  +  + +++P    +   A    
Sbjct: 105 QTFSSFISGQLLEACILAMLYYVSMTLFKMPYAMLISTVIGVTSIVPMFGAMLGMAFGCV 164

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L+   N + +    ++  I     +  + P +VG  + LP +     +V     +GL G+
Sbjct: 165 LIFAINPWMSLFFMVYFQIVQQFENNLIYPRVVGNSVGLPGIWVLLSIVVFGGLLGLFGM 224

Query: 329 FIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            I     A++  +  E +      K +I   
Sbjct: 225 LIAVPATAVLYTLLGEFVNGRMRKKGQILDE 255


>gi|163790869|ref|ZP_02185293.1| predicted permease [Carnobacterium sp. AT7]
 gi|159873822|gb|EDP67902.1| predicted permease [Carnobacterium sp. AT7]
          Length = 161

 Score = 56.0 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 66/158 (41%), Gaps = 2/158 (1%)

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-G 256
              K+I     K I+  F     +A    ++L   +++ G+       +  A++ +IP  
Sbjct: 2   EDVKEILVKSIKGIKGYFKAELKLAALTFILLCIGFFIIGMDYWGIKALGVAVVDIIPIL 61

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           G+ I     ++   + GN   A  L L   I + ++ +   PF+ G  I +  L TF   
Sbjct: 62  GSGIIMIPWALVHFLIGNTTIAWQLGLVY-IIVTVIRQIAEPFVTGREIGVRPLYTFIST 120

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           V  +   G  G  IG V+  +I  I++  ++   E  +
Sbjct: 121 VVCMLVFGPFGALIGAVVAIVIKAIYEVKMIRKSEYND 158


>gi|289666375|ref|ZP_06487956.1| transport protein [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 413

 Score = 56.0 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 42/336 (12%), Positives = 108/336 (32%), Gaps = 18/336 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +    +  +L+  +    PV+ A        PI                +I  +     
Sbjct: 78  VLATLAVGYTLWAAQTIILPVMLAAFFALIGNPILRGLRKLHIPRFLGALLILCLG---- 133

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               L       +            A Q    + R + ++   +  +    ++ +     
Sbjct: 134 ----LAGTVTLAVQLAGPAAEWAQQAPQQMRQIARDVRNLTKPVMQANQVAENFARAAGG 189

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ-QLDSLG 192
           +      +    +D   +   R          S++ +++  FFF   G S+ +  +  L 
Sbjct: 190 EGQRGVQIVRTQMDDPYKALVR----TPKLAASVLAVVLLTFFFMVYGESLQRHAIALLA 245

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH--VALGVITAI 250
                 +  +I   + + +    L +++I    GLV     +   +P    +  G + A+
Sbjct: 246 NRQQQRFTTEIMLDIEREVSRYVLTISVINTLVGLVFAGILYALKIPLPEAILWGTVVAL 305

Query: 251 MAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +   P   P+    + + +         ++    +       I  + + P ++G  + + 
Sbjct: 306 LNFAPYVGPLIGVMLMLLMGFVEFRGTLSSLLPAILYLALHTIEGQVVTPIVLGRRMAIS 365

Query: 309 FLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWK 343
            L     L+      G++GL +  P+L+ +  V+ +
Sbjct: 366 PLMLILALMLFGWAWGMVGLLLAVPLLVCIKMVLSR 401


>gi|152992184|ref|YP_001357905.1| hypothetical protein SUN_0589 [Sulfurovum sp. NBC37-1]
 gi|151424045|dbj|BAF71548.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 345

 Score = 56.0 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 57/328 (17%), Positives = 113/328 (34%), Gaps = 25/328 (7%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + IIL  +        P L AL +     P Y     KK      LA++  V  + L I 
Sbjct: 18  IVIILAGIKMAAVIIVPFLLALFLATILSPFYLWL--KKMGVHEILALLIIVLFLFLVIS 75

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            ++ L    + +  +              VP + + +   +        +          
Sbjct: 76  SMITLIGNSVQDFSQ-------------NVPMYEAKLRTDLSHIFDRLDNWGIHVPKDDF 122

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
              F   + + +I      FG +  +  + I+ +I  L         ISQ    L +   
Sbjct: 123 LAMFHTRSVMHYIAGTLRSFGSLLTNSFMIIMTVIFML-------MEISQFTAKLAQ--T 173

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
                     V   I+   L  T+ +   GL++     + G+   V  G++  ++  IP 
Sbjct: 174 NVKGLATVTEVSGKIKHYILLKTLTSAATGLIITIILKMLGIHYAVLWGLLAFLLNFIPN 233

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ ++     +  L++ NI  A        +   ++   L P ++G  + L  L  F  
Sbjct: 234 IGSILAAIPAVMMALVQFNITTALIAAGAYLLVNVLIGSILEPRILGKGLGLSTLIVFLS 293

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L+     +G +G+ +   L  +I ++  
Sbjct: 294 LIFWGWLLGPIGMLLSVPLTVIIKIVLN 321


>gi|161170252|gb|ABX59222.1| permease [uncultured marine bacterium EB000_55B11]
 gi|297183781|gb|ADI19904.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
          Length = 345

 Score = 56.0 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 53/309 (17%), Positives = 102/309 (33%), Gaps = 33/309 (10%)

Query: 41  GFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN 100
               WP+ + F                + V+ +F+  +  + +     ++  +S++ +  
Sbjct: 48  AIAKWPMMNYFSKFIHR----------LVVLLIFVSIVALISFMISNNIEYTLSQLPIYQ 97

Query: 101 QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIF 160
            +   V   L++              LS+  SL  + E + K+  +      A  FG I 
Sbjct: 98  TNLQIVVDNLAE-----------GFGLSNAPSLNKIIENWWKSIDLQSFAFRA--FGSIS 144

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV---IRSTFLG 217
               +  +  + A F       +     ++           +   I+ KV   I      
Sbjct: 145 SVGSILFMTALYAGFLL-----TEVNNFNAKISKALGGDATQALEIISKVNNRIGVYLTI 199

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNI 275
            TII I    +     W+ G+ S V   V+   +  IP  G A      V + L   G++
Sbjct: 200 KTIINIILASISFLIMWVMGIDSAVFWAVMIGFLNYIPYVGSAIGVGFPVGLALAQFGSL 259

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             A    +        V   L P ++G  + L        LV      GL G  +   L 
Sbjct: 260 QWAILALVLLMAVQTYVGNILEPKMIGKSVNLSSFVVLLALVFWTTIWGLPGAILSIPLT 319

Query: 336 ALIAVIWKE 344
           +++ ++  E
Sbjct: 320 SVLVILLAE 328


>gi|304320819|ref|YP_003854462.1| hypothetical protein PB2503_06272 [Parvularcula bermudensis
           HTCC2503]
 gi|303299721|gb|ADM09320.1| hypothetical protein PB2503_06272 [Parvularcula bermudensis
           HTCC2503]
          Length = 395

 Score = 56.0 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/200 (12%), Positives = 62/200 (31%), Gaps = 5/200 (2%)

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               I R A+      L   +++   +   F     G    +     G          + 
Sbjct: 171 AAQSIVRTATGTASNLLGSIVTVF--LYTAFLLVERGRFSRKLTALAGAPSRRHELDAVI 228

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
             + +++R+     ++I +    +      + G+       ++  +   IP    +    
Sbjct: 229 SDISRLVRTYIATKSVINLSVATISFVIMSIIGIDFAGFWALLIFVFGFIPIIGAVIAVM 288

Query: 265 VSIYLLI---KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               L +    G++  A    +       ++   + P ++G  + L  L     L     
Sbjct: 289 APTLLALIQPDGSLSKAVLTLIMLTGTEQMISSFVEPRVMGRNLNLSPLVILISLAVWGS 348

Query: 322 TMGLLGLFIGPVLMALIAVI 341
             GL+G+ +   L  +  ++
Sbjct: 349 IWGLVGMLLSVPLTVVALIV 368


>gi|294507665|ref|YP_003571723.1| hypothetical protein SRM_01850 [Salinibacter ruber M8]
 gi|294343993|emb|CBH24771.1| conserved membrane protein containing DUF20 domain [Salinibacter
           ruber M8]
          Length = 363

 Score = 56.0 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/282 (9%), Positives = 77/282 (27%), Gaps = 16/282 (5%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           V + +++      +                 +  + +  + +            +   L 
Sbjct: 52  VFAGILLAVFLAGVTQELTEDTRLPRPLAVALTLIGLGGVLVGLWALAGPDISEQASALA 111

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
           + +             L+           W +    P  L     + L            
Sbjct: 112 TLL-------PDAAERLASRIRTTVQRYGWMQRYVDPSQLLPPVSSVLGR---------V 155

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
           +      L+  ++   ++    +      S    +  L         + +   + + +R 
Sbjct: 156 TNVFRDTLNLLVNGFIILFIGIYGGAAPQSYLDGVVQLVPPSSRPRARDVLSALGRALRW 215

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
              G  I+ +  G++      + G+PS +ALG++ A+ + +P   P+     ++ +    
Sbjct: 216 WLTGRLILMLIVGVLTAVGLKVVGIPSPIALGLLAALFSFVPYLGPVLSVLPALLVASLI 275

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                  + L       +    + P +    + +P       
Sbjct: 276 GPTEVLYVILVYGAVQLLESYLISPLVQQQAVHIPPATVITA 317


>gi|120555058|ref|YP_959409.1| hypothetical protein Maqu_2143 [Marinobacter aquaeolei VT8]
 gi|120324907|gb|ABM19222.1| protein of unknown function UPF0118 [Marinobacter aquaeolei VT8]
          Length = 366

 Score = 56.0 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 61/166 (36%), Gaps = 2/166 (1%)

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  + +               +I+      I      + +     G++ G   W  G+P 
Sbjct: 188 GDRLIRNFVKQLPRSQRKTVLRITHDSQHQIAQYLAVLGLSNTSVGVLTGLICWAIGLPD 247

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRP 298
               G+I  +   IP  G  ++ T ++I   I  ++     L     I L  IV   L P
Sbjct: 248 PAVWGLIAGLARFIPYLGNMLTITLLAIVSAISLDVLWMMVLAPISFIVLTTIVGFFLEP 307

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           ++ G  + +  +  F  +       G +G+ +   LM +I V+ K+
Sbjct: 308 WIHGFRMAINPVIIFVSIFFWGWLWGPVGVLLAVPLMTVIQVVLKQ 353


>gi|163733660|ref|ZP_02141102.1| hypothetical protein RLO149_05093 [Roseobacter litoralis Och 149]
 gi|161392771|gb|EDQ17098.1| hypothetical protein RLO149_05093 [Roseobacter litoralis Och 149]
          Length = 378

 Score = 56.0 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 120/338 (35%), Gaps = 12/338 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +     +   ++L +L +   F  PV +A +  F        +++K   +    A + T 
Sbjct: 23  ELAAIGIFCILLLQTLVWASDFLIPVTAAFLGYFVLNRP-RRWLAKAGVAPAVSAGLFTA 81

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +    +V L+ L       +++L S +    +        L  I     A+E   + ++
Sbjct: 82  ILAAFIVVLLVQLSAPAAQFIEDLPSLMEQIKEKLSASGGTLEAINDATVAAE---EIIA 138

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  +  E    T     I   A  F    L   + + F++ +   F       S+ +
Sbjct: 139 DQGAETVAVEVVSNTGVAATIFSMAPGFLSRILFALILLFFLVASGDMFL------SKAV 192

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S           ++   +   +     G+TII  G G+ +  A  L  +P  V LG + 
Sbjct: 193 QSFERFSDKRRAVEVLHAIEDRLGYYLGGITIINAGLGIAVAIAMSLWNLPGAVLLGFMA 252

Query: 249 AIMAMIPG--GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             +  +P   G   +  A +I  +     + A  +F    +   I  + + P ++   ++
Sbjct: 253 FGLNFVPFLGGLAGATIAAAIAFVSLDGTWAAAGVFGTYILLTSIEGQFITPVVISRRMR 312

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L     F  +        ++G+ +   ++ ++ +   E
Sbjct: 313 LNTTVVFLSVAFFAWIWSVMGMVVALPILIVLKIACDE 350


>gi|254516330|ref|ZP_05128389.1| integral membrane transport protein [gamma proteobacterium NOR5-3]
 gi|219674753|gb|EED31120.1| integral membrane transport protein [gamma proteobacterium NOR5-3]
          Length = 346

 Score = 56.0 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 102/301 (33%), Gaps = 21/301 (6%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L +L I   +   +     +          ++TV+ + + ++ +        + + 
Sbjct: 32  VVPFLLSLFIAIIAATPFGWLKKR---------GLSTVASVFIVVIAIAVSITLFAILLG 82

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
                   A Q    +P + + +              +  + +++       +     + 
Sbjct: 83  N------TATQFEAAMPLYQARLDELTAT----VTTWAATKGIRLDDAGIFNSLDPAAVM 132

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
            F +           +   ++  + F   +     ++L S+  H   +   +++ +V  +
Sbjct: 133 NFGNNLVAGIGGALSNYFLVLFTVMFMLFEAAGFPRKLASIQGHDSESTLLRLAEVVESI 192

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
            R       I+++  GL++  A  L G+      G +  ++  +P  G+ I+     +  
Sbjct: 193 NRYVV-AKAIVSLATGLLIWLALELIGLDFAPLWGFMAFLLNFVPNIGSLIAAVPAVLLA 251

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           +++        +     +   +V   + P ++G  + L  L  F  LV      G +G+ 
Sbjct: 252 ILQLEPAMVLVVIGVYILINTVVGSIIEPTIMGQRVGLSTLAVFLSLVFWGWMFGAVGML 311

Query: 330 I 330
           +
Sbjct: 312 L 312


>gi|124268207|ref|YP_001022211.1| putative permease transmembrane transport protein [Methylibium
           petroleiphilum PM1]
 gi|124260982|gb|ABM95976.1| putative permease transmembrane transport protein [Methylibium
           petroleiphilum PM1]
          Length = 353

 Score = 56.0 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 55/349 (15%), Positives = 120/349 (34%), Gaps = 14/349 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M  T    Q +   +I   + ++L+ L     P + A ++G+   P+      ++     
Sbjct: 1   MTLTAAQKQSLAWLVIGAALALALWLLGPVLTPFVIAAVLGYALNPLVDGLTRRRVPRPL 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++  ++++ L  V LL +    + E+  L  ++    +    + RWL         +
Sbjct: 61  AALLVEVLALLVLLAV-LLLIVPIFVKELPVLRDQIP---ELLTRLDRWLQ-----PTLA 111

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFF 177
                      S+K      +  N   +I          G   L      + + + L++ 
Sbjct: 112 RFGVDVSLDVASIKAFILGHVGDNTESWIATALDSLRIGGSFMLGLLGGAVLLPLVLYYV 171

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             D   I  ++ +L        +        +++     G  ++             L G
Sbjct: 172 LVDWPQIVARVQALVPPRRRPGFDSFMGDCDRMLGQYLRGQLLVMGILAAFYSIGLALFG 231

Query: 238 VPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
               + +GV T +   IP  G       A+ + LL  G ++    + +   +   +    
Sbjct: 232 FDLALPVGVFTGVAVFIPYVGFGLGLALALLVGLLQFGGLYGIVAVAVVYGLGQVVESFY 291

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L P LVG  I L  +   F L+   +  G +G+ +   + A+  V ++ 
Sbjct: 292 LTPRLVGERIGLHPITVIFALLAFGQLFGFIGVLVALPVSAVGVVAFQR 340


>gi|315633635|ref|ZP_07888925.1| PerM family permease [Aggregatibacter segnis ATCC 33393]
 gi|315477677|gb|EFU68419.1| PerM family permease [Aggregatibacter segnis ATCC 33393]
          Length = 351

 Score = 56.0 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/345 (14%), Positives = 117/345 (33%), Gaps = 21/345 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M +     + ++    + IIL  +        P L +L I     P  +    KK     
Sbjct: 1   MEKHASLVKALVACAAIVIILAGIKAASEIVVPFLLSLFIAIICSPSLNYLTKKKVPYGL 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            + ++  ++++  F   L  L    + E  + + +                    G   +
Sbjct: 61  AIGLLLALTLIVFFF--LFGLINSTIQEFSQSIPQYRQL---------------LGERVN 103

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L     S    L I  ++ ++      I  F  R  + F     +I  +++ + F   +
Sbjct: 104 SLVALSQSLKIPLDISEKSIMEHFDPSVIMNFVRRVFLSFSGVVTNIFVLVLVVIFMLLE 163

Query: 181 GFSISQQLDSLGEHLFPA--YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                 +   +           ++    + + + S     T++++   + +     + GV
Sbjct: 164 APYAKHKFAVVFSSDSKEISQQERYLDRILQGVISYLGVKTMMSLLTAICIWLLLEIVGV 223

Query: 239 PSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
              +    ++ ++  IP  G+ I+   + +  L+         + +       I+   L 
Sbjct: 224 QYAILWATLSFLLNYIPNIGSIIAAIPIIVQALLLNGFVVGLEVIIGVIAINMIIGNVLE 283

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
           P L+G  + L  L  F  L+     +G +G+ +  P+ MAL   +
Sbjct: 284 PRLMGKKLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMALKIAL 328


>gi|88855233|ref|ZP_01129898.1| membrane protein [marine actinobacterium PHSC20C1]
 gi|88815761|gb|EAR25618.1| membrane protein [marine actinobacterium PHSC20C1]
          Length = 353

 Score = 56.0 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/324 (16%), Positives = 108/324 (33%), Gaps = 22/324 (6%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           ++SL  +  +      AL +     P+ S    KK     + A++  +  +      L+F
Sbjct: 27  IISLATILTYVGA---ALFLALGLDPLVSWLEKKKFPR--WTAILTVLVGVLGVFTGLVF 81

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH-LSHPQSLKILSET 139
                + E                 +PR ++ +  G     + T     + Q L     T
Sbjct: 82  AIVPVIAE---------QVRNAANAIPRLVTALFDGTIRENVETTFPWLNVQELLDGFTT 132

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
           ++       I       G+         I ++I   +F     +I   +  L      A 
Sbjct: 133 WVTELDFTTIGGGVFAVGIGIATGITGGIIVLILTIYFVSSLNNIKSGIYQLVPATKRAK 192

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL------AGVPSHVALGVITAIMAM 253
           +  ++  V   +    +G   +A+  G++      L        V     L  I  + ++
Sbjct: 193 FIDLAEQVSNAVGRYVIGQGSLALVNGVLSFIVLTLIFPAFDLPVKYSALLAFIAFMGSL 252

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP  G       +++ +L+     +   + ++  I + I    L P ++   +KLP    
Sbjct: 253 IPLVGTLSGSVVITLLVLLFNGPPSVVAVGIYYLIYMQIEAYLLNPRIMSRAVKLPGALV 312

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMA 336
               + G   +G+LG  I   + A
Sbjct: 313 VIAALAGGTLLGILGALIAIPVAA 336


>gi|215486777|ref|YP_002329208.1| putative transport protein [Escherichia coli O127:H6 str. E2348/69]
 gi|312966641|ref|ZP_07780861.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|215264849|emb|CAS09234.1| predicted inner membrane protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312288751|gb|EFR16651.1| conserved hypothetical protein [Escherichia coli 2362-75]
          Length = 344

 Score = 56.0 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 104/328 (31%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVHWRVPRVLAVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ VM + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 126 HYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKFQQMMAR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+    + A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|194467197|ref|ZP_03073184.1| protein of unknown function UPF0118 [Lactobacillus reuteri 100-23]
 gi|194454233|gb|EDX43130.1| protein of unknown function UPF0118 [Lactobacillus reuteri 100-23]
          Length = 370

 Score = 56.0 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 61/168 (36%), Gaps = 1/168 (0%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +   AS          ++  F I  L +        ++ L +          K + ++  
Sbjct: 164 VISTASSVFSAATTAVIAFFFSIYLLIYKEMLQHQFTKLLSTYFSRYQSQIIK-VLKVFD 222

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           +   +  +G    A   G+       +  +P    +GV+TA  A+IP    I   +V + 
Sbjct: 223 ESYSNYIVGQCKDAAILGISCFIGMTILRMPYASMIGVVTAFGALIPIIGAILGASVGVI 282

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           ++   +   A    ++  +   + ++   P +VG  I LP +  F  +
Sbjct: 283 IIFAVSPLQAGIFLIFIILLQQLDNRITYPLVVGRSIGLPSVWVFAAV 330


>gi|296271616|ref|YP_003654247.1| hypothetical protein Arnit_0071 [Arcobacter nitrofigilis DSM 7299]
 gi|296095791|gb|ADG91741.1| protein of unknown function UPF0118 [Arcobacter nitrofigilis DSM
           7299]
          Length = 340

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/323 (15%), Positives = 110/323 (34%), Gaps = 32/323 (9%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           +V + FL  F + ++S LI              K  +      +I+ + V+  F +  L 
Sbjct: 29  IVIVLFLAIFISSIISTLI--------------KILDKRHIPKLISYLLVLGFFTLISLL 74

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L Y   + +K+ ++ +    +        +  +              +      I  +T 
Sbjct: 75  LAYIVNISLKDFITNLPTYEEKLQQTIVNIISL--------------AENYGYSIDKKTI 120

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           L    ++      +        +    + +II + F   +  S  ++L  L      +  
Sbjct: 121 LDALNLNSFFGITTNLIGSIGTFLSKFLLIIIGIGFILAESKSFEKKLKILFRK--ESDK 178

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAP 259
            +   +    I+  FL  T  +   G ++        +   +  GVI  +   IP  G+ 
Sbjct: 179 IEHFNLFSNNIQKYFLVKTATSFLTGFLVAITLIFFDISYPILWGVIAMLFNFIPVVGSI 238

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           I+     +   +  ++     L +        +   + P  +G  + L  L  FF L+  
Sbjct: 239 IAAVPAILLSFLTSDLNTTLILIVLYLAINIFISNIIEPKFMGKELGLSPLVIFFSLILW 298

Query: 320 VRTMGLLGLFIG-PVLMALIAVI 341
              +G++G+F+  P+ M L    
Sbjct: 299 GWVLGIVGMFLAVPITMTLKIAF 321


>gi|212212631|ref|YP_002303567.1| hypothetical membrane spanning protein [Coxiella burnetii
           CbuG_Q212]
 gi|212011041|gb|ACJ18422.1| hypothetical membrane spanning protein [Coxiella burnetii
           CbuG_Q212]
          Length = 376

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/333 (15%), Positives = 107/333 (32%), Gaps = 29/333 (8%)

Query: 14  WMIMFIILVSLYFLKGF-FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
            +I++++ +  +       A VL  +II  T+  +Y     KK  S  F   +A V+   
Sbjct: 48  VLIVYLLFIGRFLFLPLTIALVLWYVIISLTA--LYQRIPFKKRLSHGFALFLAIVTTAI 105

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
                L   F      + +L+       Q    + RW + + GG              ++
Sbjct: 106 F----LYLFFLMFTQSLPDLIEAAPAYQQKLYQLLRWFNVLVGGGRLYLGQLMRQIDLKN 161

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           +       L                        +   +I+ LFF   +  S +Q+L  L 
Sbjct: 162 IFSELPIILSLTAA-------------------NFTLVIVYLFFLLLEHRSFNQKLKLLC 202

Query: 193 EHLFPAYW-KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                     +I + + K + + F   T+I++   L          + +         ++
Sbjct: 203 HSSKKYKKVTEIIKEITKDVNNYFKVKTLISLITALFSYFVLLGFKINNAEFWSTFVFLL 262

Query: 252 AMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
             IP   P+      + +       +     L +       I+   + P  +G  + L  
Sbjct: 263 NYIPYIGPLIAVVTLLIVASIQVTQLVPFIFLGILLTAIQIILGNFVEPKWLGVRLNLSP 322

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L     L       G +GLF+   +M ++ +I 
Sbjct: 323 LVILLSLAFWGSLWGFIGLFLSVPIMVILTIIL 355


>gi|291457309|ref|ZP_06596699.1| hypothetical integral membrane protein [Bifidobacterium breve DSM
           20213]
 gi|291381144|gb|EFE88662.1| hypothetical integral membrane protein [Bifidobacterium breve DSM
           20213]
          Length = 530

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 75/231 (32%), Gaps = 2/231 (0%)

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
            +  +  T  +    +L       ++T+ +      A         + L+++ +++  ++
Sbjct: 146 EFVDQYATFKMPEINNLGTEIVNNIQTSWVTDFAGTAMSTVGGLFSFLLNLMTVVMTTYY 205

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
               G  + +             +  +  +    I S     +I+A+           + 
Sbjct: 206 ISAAGPKLRRSFCQWLAPSTQRRFLLVWTVAQGQISSFLFSRSILALINATCTAIFLEIL 265

Query: 237 GVPSHVALGVITAIMA-MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
            VP  + L +   +++  IP  G  I      ++         A  + ++  +   I + 
Sbjct: 266 HVPYWLPLALFCGVVSQFIPTVGTYIGGALPVLFAWGDRGWAYAVAVLVFIIVYQQIENL 325

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L P +    + +     F  ++      G  G F+   + A +  I++  
Sbjct: 326 ILSPRISQRTMDINAAVAFLAVLAFGSLFGAFGAFLALPVTASLQAIFRAY 376


>gi|228985048|ref|ZP_04145216.1| UPF0118 membrane protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228774736|gb|EEM23134.1| UPF0118 membrane protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 339

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 54/324 (16%), Positives = 115/324 (35%), Gaps = 25/324 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +G  R++++ I+ + LY LK     +L   I+ F           K   +   +    
Sbjct: 9   RSRGFQRFLVLIILALVLYGLKSMINLILITFILTFLMDRFQRFISKKLNVNRKIVIACL 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++      L        +++ +L+ +  L  Q+           P      +     
Sbjct: 69  YIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQN-----------PPDNEIIKYALST 117

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           ++  +  K + +      G+D I +  +  G + L   LS+I  +  L     +   I  
Sbjct: 118 INGMEVSKYIEQ------GVDVIYQSIANIGKVSLQILLSLILSLFFL----LEKERIIT 167

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 E     ++++I+    +  RS         +IA+   ++   A  + G P  + 
Sbjct: 168 FTSKFKESKLKIFYEEIAYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLLV 227

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L V+  ++ +IP  G  IS   +SI     G +     + ++  +   +    L P  + 
Sbjct: 228 LAVMIFLLGLIPVAGVIISLFPLSIIAYNVGGVMYVVYILMFITVIHALESYFLNPKFMS 287

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLL 326
               LP   TF  L+     +G+ 
Sbjct: 288 AKTNLPIFYTFMILIFSEHFLGIW 311


>gi|162451781|ref|YP_001614148.1| putative transport protein [Sorangium cellulosum 'So ce 56']
 gi|161162363|emb|CAN93668.1| putative transport protein [Sorangium cellulosum 'So ce 56']
          Length = 365

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/317 (13%), Positives = 101/317 (31%), Gaps = 24/317 (7%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV-SVMCLFIVPLLFLFYYGML 87
            F  PVL  + +   S PI +    +   ++        V   + +F+  ++ +    + 
Sbjct: 26  PFLVPVLFGVALAAISSPIATWVTRRGLPAALGALAALVVDLAILVFVGAVVTIAGVELE 85

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           E   +    + +    + V       P                       E   +T    
Sbjct: 86  EKVPVYLVRMSSMTDALAVTLTERGFPVNP--------------------EFLSRTLHTA 125

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            +        +       S+  +++ +FF   +G     ++  L     PA   +    +
Sbjct: 126 SLVPLLGGAAVTVASAASSLGVVLLVVFFALCEGAGAGAKVRRLLS--TPARGLEHVDRI 183

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVS 266
            + ++   +  T+ ++   ++      L GV   + L     ++  IP  GA ++     
Sbjct: 184 VREVKKYLVVKTLTSLLVAVLAYVLLVLLGVDLALLLASSLFVLHFIPNIGAAVATIPAV 243

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           +  L       A  + +   +   +V   L P ++G  + L  L    G++      G  
Sbjct: 244 LAALASQGPGTAALVAIGYLLINLLVGNVLEPRVLGRTLGLSPLAVLIGMLFWGWLWGPA 303

Query: 327 GLFIGPVLMALIAVIWK 343
           G  +   +M +  +  +
Sbjct: 304 GALLSVPIMMVAKITLE 320


>gi|260433770|ref|ZP_05787741.1| transporter, permease [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417598|gb|EEX10857.1| transporter, permease [Silicibacter lacuscaerulensis ITI-1157]
          Length = 361

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/333 (12%), Positives = 98/333 (29%), Gaps = 23/333 (6%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +++ ++++ LY    F  P+  AL+I      +    I+              ++ + +
Sbjct: 21  TIVLTLVVLGLYAGASFLVPLTMALLINVLIIALSDRVIALTRAPVWLAN----LAAVTV 76

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +  L  + Y    +  +              V   ++ + G                 +
Sbjct: 77  VLAGLFMITYILGSQATQFARTAGDYESQFDGVINRVTGLVG---------------NDV 121

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                  L +  +  + R         L+     +  +   F          +   + G 
Sbjct: 122 TTFVRDNLISMDMASVARVLLGSATSMLNQF--FLISLYVAFLMAERLAFRKKLRIAAGN 179

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            +  A    +   +   ++      T I++    +  + +   G+       V+T  +  
Sbjct: 180 PVTGAELSSVLDAITFSLQRYVGVKTFISLVTAGISYAIFRALGLEYAETWAVLTFALNF 239

Query: 254 IPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           IP    I        I L+    +     + L      F++   L P L+G  + +    
Sbjct: 240 IPSIGSIIAVVFPAMIALVQFETLGPFLVVVLGCGTIQFLIGNFLDPALLGRSLNMSTFL 299

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
               L       GL+G F+   L   I +I+  
Sbjct: 300 VILALTFWTTVWGLIGAFLSVPLTVCILIIFSH 332


>gi|218695163|ref|YP_002402830.1| putative transport protein [Escherichia coli 55989]
 gi|218351895|emb|CAU97620.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli 55989]
          Length = 344

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 104/328 (31%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ VM + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 126 HYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKFQQMM--ACPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+    + A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|148242404|ref|YP_001227561.1| permease [Synechococcus sp. RCC307]
 gi|147850714|emb|CAK28208.1| Predicted permease [Synechococcus sp. RCC307]
          Length = 346

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/334 (13%), Positives = 111/334 (33%), Gaps = 19/334 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           +  +   +V L+ L+     +  ++++      +  +  S+          ++ + V+ L
Sbjct: 18  FAALIAAVVLLWDLRFVLIDLFGSVVLAVAFCTLVRAVQSRLGWRRWPSLALSLLLVVVL 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            IV ++ L      + +EL+ ++  A Q        L  + GG  +S +        QS 
Sbjct: 78  VIVVVVALVPPFSAQFRELIEQLPQAAQA-------LQQLIGGDLSSAI--------QSN 122

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
               E +   N    +   A  FG+  +     +   ++             Q    +  
Sbjct: 123 ISNPEKWNLANSFSRVVELAGNFGIGLVQLVFVVAVALM----LSVQPEDYRQVAVLMAP 178

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                    +     + + S  +G+ I ++  G +      L GV    A  ++  ++ +
Sbjct: 179 SYLRRRIAGVLDSCGQALSSWMVGVLISSVAVGFMAFVGLSLLGVKLTTANALLAGMLNV 238

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P       + + +    + +  +     +        + P ++   +KL    T 
Sbjct: 239 IPNVGPTLSVVFPMAVALLDTPWMSLAVLALYVVIQNFESYVITPSVMHHQVKLLPGLTL 298

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
                     G  GL +   L   + V+ +E ++
Sbjct: 299 AAQGIFTVIFGFKGLLLALPLAVCLQVVVRELVV 332


>gi|83815970|ref|YP_445768.1| domain of unknown function, putative [Salinibacter ruber DSM 13855]
 gi|83757364|gb|ABC45477.1| Domain of unknown function, putative [Salinibacter ruber DSM 13855]
          Length = 352

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/282 (9%), Positives = 77/282 (27%), Gaps = 16/282 (5%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           V + +++      +                 +  + +  + +            +   L 
Sbjct: 41  VFAGILLAVFLAGVTQELTEDTRLPRPLAVALTLIGLGGVLVGLWALAGPDISEQASALA 100

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
           + +             L+           W +    P  L     + L            
Sbjct: 101 TLL-------PDAAERLASRIRTTVQRYGWMQRYVDPSQLLPPVSSVLGR---------V 144

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
           +      L+  ++   ++    +      S    +  L         + +   + + +R 
Sbjct: 145 TNVFRDTLNLLVNGFIILFIGIYGGAAPQSYLDGVVQLVPPSSRPRARDVLSALGRALRW 204

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
              G  I+ +  G++      + G+PS +ALG++ A+ + +P   P+     ++ +    
Sbjct: 205 WLTGRLILMLIVGVLTAVGLKVVGIPSPIALGLLAALFSFVPYLGPVLSVLPALLVASLI 264

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                  + L       +    + P +    + +P       
Sbjct: 265 GPTEVLYVILVYGAVQLLESYLISPLVQQQAVHIPPATVITA 306


>gi|121997925|ref|YP_001002712.1| hypothetical protein Hhal_1134 [Halorhodospira halophila SL1]
 gi|121589330|gb|ABM61910.1| protein of unknown function UPF0118 [Halorhodospira halophila SL1]
          Length = 361

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 65/187 (34%), Gaps = 3/187 (1%)

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            +  +   A+        +  +   +++A  F   +  ++  +L            +  +
Sbjct: 143 AVGTLTDAAATVASGIGQFTAATFLVLLAFMFLLLEESTLPGKLSVAFP--ASRRARVRT 200

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFT 263
           R   + +       +  +   G+++G+  WL GV   +  G+   ++  IP  G+ I+  
Sbjct: 201 RRFLRAVDRYIFIKSATSTLTGVIIGTGLWLIGVDFPILWGIFAGLLNFIPTVGSIIAAA 260

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
                 L+ G + +A             +     P L+G  + L  L     L+      
Sbjct: 261 PAVAVALLGGGLLDAVLTVALYVAVNVAIGSITEPRLMGRTLGLSPLVVLISLMVWGWVF 320

Query: 324 GLLGLFI 330
           G +G+ +
Sbjct: 321 GPVGMLL 327


>gi|86749792|ref|YP_486288.1| hypothetical protein RPB_2675 [Rhodopseudomonas palustris HaA2]
 gi|86572820|gb|ABD07377.1| Protein of unknown function UPF0118 [Rhodopseudomonas palustris
           HaA2]
          Length = 391

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/352 (12%), Positives = 92/352 (26%), Gaps = 11/352 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +    +L + +   G    + + ++ G     +                 +    + 
Sbjct: 24  ISTVAFGALLYTSWHFAGTLFLIFAGILFGVFLNALTDLAGKVVGGPHGLRLALVCCVLT 83

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +FI   +        +   L   +     +              M  + +     S   
Sbjct: 84  VMFIGIAVLGGNTIAQQATALSGTIKAQIVNAKTFLERQGVDTSFMELNVVANAANSANA 143

Query: 132 SLKILSETFLKT-----------NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                 +  L             +G   I     +  +  +    +   ++     F   
Sbjct: 144 GSTAAEQQPLPQPRNLPSAGDLASGGGAIVSQTLKLILGTIGAVGNFFIVMFLGLAFAAQ 203

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                + L+ +    + A    I      +++   L   I       V  +   L G+P 
Sbjct: 204 PDVYRRGLERVAPLRYRAQASAIVGDTGDMLKRWLLAQLITMSAVFAVTATGLSLIGIPG 263

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              LG+   ++A IP    I    V +   I    F     F+       +    L P +
Sbjct: 264 AFILGIQAGLLAFIPTVGAILGGLVIVLAAIGSGWFAVVSAFVLFLGVHALESYILTPLI 323

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
               I +P    F   +      GL GL +   LMA+  V+           
Sbjct: 324 QRQAIDIPPATLFAMQILLGIVFGLWGLAMALPLMAIGRVVINHLRAEPTPE 375


>gi|18423808|ref|NP_568833.1| unknown protein [Arabidopsis thaliana]
 gi|16648987|gb|AAL24345.1| Unknown protein [Arabidopsis thaliana]
 gi|28059051|gb|AAO29982.1| Unknown protein [Arabidopsis thaliana]
 gi|332009320|gb|AED96703.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 648

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 70/212 (33%), Gaps = 7/212 (3%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           I          F ++   ++  I  L+           +       +  +   +   ++ 
Sbjct: 441 IGNLIISGAAEFFNFISQLMIFIWVLYILITSESGGVTEQVMNMLPINASARNRCVEVLD 500

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSI 267
             I    L    IA  +G +    + L  +       V+  I A++P      +    ++
Sbjct: 501 LAISGVLLATAEIAFFQGCLTWLLFRLYNIHFLYMSTVLAFISALLPIFPYWFATIPAAL 560

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM--GL 325
            L+++G    A  L +   + +      ++  + G         T   ++GGV      L
Sbjct: 561 QLVLEGRYIVAVILSVTHLVLMEYGASEIQDDIPGSNA----YLTGLSIIGGVTLFPSAL 616

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
            G  +GP++  ++  +       +    +KI+
Sbjct: 617 EGAIMGPLITTVVIALKDLYAEFVLNEPKKIN 648


>gi|320195503|gb|EFW70128.1| Putative transport protein [Escherichia coli WV_060327]
          Length = 344

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 104/328 (31%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ VM + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQAIEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 126 HYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKFQQMMAR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+    + A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLWLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|332044623|gb|EGI80817.1| protein of unknown function UPF0118 [Lacinutrix algicola 5H-3-7-4]
          Length = 343

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 119/334 (35%), Gaps = 27/334 (8%)

Query: 17  MFIILVSLYFLKGF----FAPVLSALIIGFTSW-PIYSSFISKKEESSTFLAVIATVSVM 71
           + ++  S++ L  F      P+L A II      P+    +      S     ++ + ++
Sbjct: 16  ILLLTGSVFTLLYFGKNLIMPLLVAAIIAILLDIPVQK--LKNLGLPSWLSITLSVLLMV 73

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +F +    L        ++       A +      +W ++       S  W        
Sbjct: 74  LIFSLLFWLLSSQINNMAQDWSVIKEKATEKLNAFSQWANN-------SLNWDYKDYIEN 126

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           + K++ +     +             +I   Y +  +   +    F++  F+    + SL
Sbjct: 127 NKKLVQKAESLASSFLSSLMSLLSQSLIIFVYIILFLMQKLQFINFFKKLFTNQTAIHSL 186

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
            ++              K+ R+ F+G   I +   ++    + +  VP  + L +  A+ 
Sbjct: 187 LKN------------SAKITRNYFVGKGKIMLFLFVIYYIGFLIGSVPYALFLALFAALF 234

Query: 252 AMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           ++IP    +    V++ L  +      A  +    +    + +  L P+++G  I L   
Sbjct: 235 SIIPYVGNVIGGGVAVILSYLYAGSTPALIVISVVSATQLVENYVLTPWIIGDEINLNPF 294

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            T FG++      G++G  I   ++ ++ VI+  
Sbjct: 295 ITIFGIILFSALWGVVGAIISLPIIGVLKVIFDH 328


>gi|296450206|ref|ZP_06891967.1| conserved hypothetical protein [Clostridium difficile NAP08]
 gi|296878587|ref|ZP_06902592.1| conserved hypothetical protein [Clostridium difficile NAP07]
 gi|296260969|gb|EFH07803.1| conserved hypothetical protein [Clostridium difficile NAP08]
 gi|296430394|gb|EFH16236.1| conserved hypothetical protein [Clostridium difficile NAP07]
          Length = 340

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +S    S   +    + K   +   +V++   +    IA    +V          P 
Sbjct: 175 GDKLSDSKISFIYNSLVFFGKSFVKNFGEVMKVQVM----IAFINSVVSMIFLGFMRFPQ 230

Query: 241 HVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             ALG +  ++ +IP    I     +++     G I     + L   I   I    L P 
Sbjct: 231 IWALGFMIFVLGLIPVAGVIVSLIPLTVIAFNTGGITKVFGVLLMICIVHAIETYILNPK 290

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L+    KLP    F  L+ G   +G+ GL IG  +   +  I 
Sbjct: 291 LMSNRTKLPVCFVFIILLVGEHYLGVWGLLIGVPIFMFLMDIL 333


>gi|255656350|ref|ZP_05401759.1| hypothetical protein CdifQCD-2_11799 [Clostridium difficile
           QCD-23m63]
          Length = 340

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 58/163 (35%), Gaps = 5/163 (3%)

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +S    S   +    + K   +   +V++   +    IA    +V          P 
Sbjct: 175 GDKLSDSKISFIYNSLVFFGKSFVKNFGEVMKVQVM----IAFINSVVSMIFLGFMRFPQ 230

Query: 241 HVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             ALG +  ++ +IP    I     +++     G I     + L   I   I    L P 
Sbjct: 231 IWALGFMIFVLGLIPVAGVIVSLIPLTVIAFNTGGITKVFGVLLMICIVHAIETYILNPK 290

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L+    KLP    F  L+ G   +G+ GL IG  +   +  I 
Sbjct: 291 LMSNRTKLPVCFVFIILLVGEHYLGVWGLLIGVPIFMFLMDIL 333


>gi|15836886|ref|NP_297574.1| transport protein [Xylella fastidiosa 9a5c]
 gi|9105100|gb|AAF83094.1|AE003881_7 transport protein [Xylella fastidiosa 9a5c]
          Length = 389

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/347 (13%), Positives = 115/347 (33%), Gaps = 20/347 (5%)

Query: 7   NPQGIMRWMIMFIILVS--LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
            PQ  +  +++  + V   L+  +    PVL A+       PI  +    +   +    +
Sbjct: 45  RPQAPLSLVVLATLAVGYTLWATQAVILPVLLAVFFALVGNPILRALGHIRIPRAIGALL 104

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  + +    ++         +         +  A      + R +  +   M  +    
Sbjct: 105 LLCLGISGTAVL--------SVELAGPASEWIQQAPDKIRQLARQVRHLTKPMQQANQAV 156

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           + L+     +   ++      +           M      +S++ +I+  FFF   G  +
Sbjct: 157 ESLARAADGETERQSQTVRTRLYNPYTLL----MDTHKLVISVLGVILLTFFFMVFGEKL 212

Query: 185 SQQLDSLGE--HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV-PSH 241
            ++  +L    H        +  +  ++ R       I A+   +  G    L+      
Sbjct: 213 QRKAIALLPNHHQQRFTASILRNLEHEISRYVLTISVINALVGLIFSGLLLLLSIPLQEA 272

Query: 242 VALGVITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           +  G + A++   P   P+      + I L+       A    L   +   +  + + P 
Sbjct: 273 LLWGTVVALLNFAPYVGPLIGVLLMLLIGLVQFHESSKALLPALLYLMLHTLEGQLITPI 332

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKES 345
           ++G  + +  L     L+      GL+GL +  P+L+ +  V+ +  
Sbjct: 333 ILGHRMAISPLMLIVALLLFGSLWGLIGLLLAVPMLVCIKMVLSRIE 379


>gi|308070317|ref|YP_003871922.1| Predicted permease [Paenibacillus polymyxa E681]
 gi|305859596|gb|ADM71384.1| Predicted permease [Paenibacillus polymyxa E681]
          Length = 384

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 94/280 (33%), Gaps = 5/280 (1%)

Query: 50  SFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW 109
            +  +K     F + ++ +  + L +     L    + +  ++   +    Q  I    +
Sbjct: 54  RYFHRKGMKKPFASALSVLLFIILLLAIFFGLGLILVTQFTKVAQNLPQYTQ--IIQAEF 111

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
              +             ++   +    + T + T        F  +F   F  +  +   
Sbjct: 112 TRYLHLSQDKIAALPPSVTERVNDYFATATTIATKWAQLGLSFFIQFLSSFTVFMGNFAI 171

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
            II  FF   +         S         +  +   V K I +      ++     +++
Sbjct: 172 AIILAFFLSMEINLWKGIARSKTPKTLKTAYLFLKNHVLKAISAFLKAQALLVGITFVLV 231

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
                +  V + ++L ++ A+  ++P  G P+ F   ++YL I GN   A  L +  A+ 
Sbjct: 232 FIGLLILQVDNALSLALVAALFDILPLLGVPVIFIPWAVYLFITGNTGLAVGLLIVMAVT 291

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGL-VGGVRTMGLLG 327
           + IV +   P + G  I +          +  +   GL G
Sbjct: 292 V-IVRQLAEPKITGNSIGVSSAYLMLSFAIISLSIFGLAG 330


>gi|242280211|ref|YP_002992340.1| hypothetical protein Desal_2747 [Desulfovibrio salexigens DSM 2638]
 gi|242123105|gb|ACS80801.1| protein of unknown function UPF0118 [Desulfovibrio salexigens DSM
           2638]
          Length = 365

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 56/363 (15%), Positives = 118/363 (32%), Gaps = 19/363 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYF-------LKGFFAPVLSALIIGFTSWPIYSSFISKKEES 58
             P    R + + +I   ++        L     P   AL + +   P+ + F+ +  ++
Sbjct: 5   NTPYTFDRVVRLLLIAGFIWVAITLLNTLSAVLVPFAVALTLAYLLNPLVN-FVGRYIKN 63

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
            T   ++  ++++   +           +EMK+    +           R    IP  +W
Sbjct: 64  RTAAVLLTLLTLLVPLVKIFWMTVRTVGIEMKQTGVMLARMVNDSAVAQRAAEYIPEDLW 123

Query: 119 --ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI--FLDYCLSIIFMIIAL 174
               +L  +        +      LK +    +P   +        L     +  + + L
Sbjct: 124 HTIVDLAKQEDVRSFLTESGLTDMLKVSAQKALPGIWNIVSGSAHTLGMLAGLFVIFLYL 183

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
            F   D   + +         +             V    F    +IA+  G +    + 
Sbjct: 184 VFLLTDYDKLGKW-REQIPSRYRERVASFVDDFTNVTNRYFRTQALIALIIGCLFSLGFL 242

Query: 235 LAGVPSHVALGVITAIMAMIP----GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
           +  +P  + LG++  ++ M+P     G   +F   +I  L  G  F      +     + 
Sbjct: 243 IIKLPLAILLGMLIGLLNMVPYLQIAGLIPAFLLAAINALATGGNFWLALGGVGVVFAVV 302

Query: 291 IV--DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            V  D  L P L G  + L        L    + +G LGL +   L  +   ++++ +M 
Sbjct: 303 QVLQDAVLVPRLQGESMGLSPWMILLSLSIWGQLLGFLGLVMALPLTCMALALYRQWVMG 362

Query: 349 IKE 351
             E
Sbjct: 363 QGE 365


>gi|307187157|gb|EFN72400.1| Transmembrane protein C9orf5 [Camponotus floridanus]
          Length = 807

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 69/201 (34%), Gaps = 5/201 (2%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
           G    ++ LS +     LF+         + ++ L     P    + +  + + +   F 
Sbjct: 603 GSAVFNFVLSTVVFFTTLFYLLSSSGKTYKPIE-LTTMFSPISCHRFAIALQEAVIGVFA 661

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG-APISFTAVSIYLLIKGNI 275
               +A   G+     + L  V        +  ++  +P   A  +    +I L      
Sbjct: 662 ATFKLASFFGMWTWFIHNLFQVKIVYLPSALATMLGAVPFLDAYFACIPATIELWFTRGS 721

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             A   FL+  +   IV       + GG        T   + GG+  +G+ G   GP+L+
Sbjct: 722 MIAILFFLFHFLPCNIVVTEFYKEIKGGG---HPYLTGLSIAGGIFCLGVEGAIFGPLLL 778

Query: 336 ALIAVIWKESIMAIKENKEKI 356
             I V+   S   +   +E I
Sbjct: 779 CCIMVVINLSRRYLHSPEEVI 799


>gi|322689836|ref|YP_004209570.1| transport protein [Bifidobacterium longum subsp. infantis 157F]
 gi|320461172|dbj|BAJ71792.1| putative transport protein [Bifidobacterium longum subsp. infantis
           157F]
          Length = 469

 Score = 55.2 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 70/212 (33%), Gaps = 2/212 (0%)

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           ++T+ +      A         + L+++ +++  ++    G  + +             +
Sbjct: 140 IQTSWVTDFAGTAMSTVGGLFSFLLNLMTVVMTTYYISAAGPKLRRSFCQWLAPNTQRRF 199

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA-MIP-GGA 258
             +  +    I S     +I+A+           +  VP  + L +   +++  IP  G 
Sbjct: 200 LLVWTVAQGQISSFLFSRSILALINATCTAIFLEILHVPYWLPLALFCGVVSQFIPTVGT 259

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            I      ++         A  + ++  +   I +  L P +    + +     F  ++ 
Sbjct: 260 YIGGALPVLFAWGNRGWTYAVAVLVFIIVYQQIENLILSPRISQRTMDINAAVAFLAVLA 319

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
                G  G F+   + A +  I++      +
Sbjct: 320 FGSLFGAFGAFLALPVTASLQAIFRAYTKRYE 351


>gi|310643505|ref|YP_003948263.1| protein [Paenibacillus polymyxa SC2]
 gi|309248455|gb|ADO58022.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
          Length = 384

 Score = 55.2 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 95/280 (33%), Gaps = 5/280 (1%)

Query: 50  SFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW 109
            +  +K     F + ++ +  + L +     L    + +  ++   +    Q        
Sbjct: 54  RYFHRKGMKKPFASALSVLLFIILLLAIFFGLGLILVTQFTKVAQNLPHYTQIIQTEFTR 113

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
           +  +     A+      ++   +    + T + T        F  +F   F  +  +   
Sbjct: 114 ILHLSQDKIAA--LPPGVTERVNDYFATATTIATKWAQLGLSFFIQFLSSFTVFMGNFAV 171

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
            II  FF   +         S         +  +   V K I +      ++     +++
Sbjct: 172 AIILAFFLSMEINLWKGIARSKTPKTLKTAYLFLKNHVLKAISAFLKAQALLVGITFVLV 231

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
                +  V + ++L ++ A+  ++P  G P+ F   ++YL I GN   A  L +  A+ 
Sbjct: 232 FIGLLILQVDNALSLALVAALFDILPLLGVPVIFIPWAVYLFITGNTGLAVGLLIVMAVT 291

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGL-VGGVRTMGLLG 327
           + IV +   P + G  I +          +  +   GL G
Sbjct: 292 V-IVRQLAEPKITGNSIGVSSAYLMLSFAIISLSIFGLAG 330


>gi|212274955|ref|NP_001130415.1| hypothetical protein LOC100191511 [Zea mays]
 gi|194689060|gb|ACF78614.1| unknown [Zea mays]
 gi|223942719|gb|ACN25443.1| unknown [Zea mays]
 gi|224029573|gb|ACN33862.1| unknown [Zea mays]
          Length = 654

 Score = 55.2 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 79/203 (38%), Gaps = 9/203 (4%)

Query: 160 FLDYCLSIIFMIIALFFFY-RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
            +++   ++  +  L++    +G   ++Q+  L   +      +   ++   I S  L  
Sbjct: 457 VVNFLSQLMVFLWVLYYLITVEGGGATEQIIDLLP-VSKQVKDRCVEVMDHAISSVLLAT 515

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFN 277
             IAI +G +    +    V       V+  I A++P     +S    +  LL++G    
Sbjct: 516 AKIAIFQGGLTWLLFKFFKVHFVYTSTVLGFISALVPILPFWLSSIFATGQLLMEGRYVL 575

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM--GLLGLFIGPVLM 335
           A  + +   I L ++D      L   P       T   ++GG+      L G  +GP++M
Sbjct: 576 ALVVTV---IHLMLMDYGTTTILEDIP-GYNGYLTGLSIIGGMTLFPNALEGAILGPLIM 631

Query: 336 ALIAVIWKESIMAIKENKEKISS 358
            ++  +       +  + E+ SS
Sbjct: 632 TVVIALKNLYTEFVLADGEETSS 654


>gi|292489976|ref|YP_003532868.1| putative AI-2E family transporter [Erwinia amylovora CFBP1430]
 gi|292901002|ref|YP_003540371.1| membrane protein [Erwinia amylovora ATCC 49946]
 gi|291200850|emb|CBJ47984.1| putative membrane protein [Erwinia amylovora ATCC 49946]
 gi|291555415|emb|CBA23846.1| putative AI-2E family transporter [Erwinia amylovora CFBP1430]
 gi|312174165|emb|CBX82418.1| putative AI-2E family transporter [Erwinia amylovora ATCC BAA-2158]
          Length = 345

 Score = 55.2 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/344 (13%), Positives = 120/344 (34%), Gaps = 22/344 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R+  +    +++   + +IL  +        P + A+       P+ S  + +      
Sbjct: 4   LRQEKVGQNILLKLATLVVILAGIKMSAEIVVPFILAMFFAIVINPLVSVLVQR--GIKR 61

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            +A+   V ++ L +  L+ +    + E  E+  ++   +   + V +            
Sbjct: 62  GMAISLVVVILLLALALLVAMVAGSLQEFSEVYPQLQAQSVQKLGVIQ------------ 109

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                H +   +L I S +  +      I   A+            ++ +I+ + F   +
Sbjct: 110 -----HFAARFNLNISSTSLAQRLDPGAIMDVATTMLRQLSGAMTQLVLVIMTVIFMLFE 164

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +  +L      + P           K +        +I++  G+++  +    G+  
Sbjct: 165 VHHLPYKLRYAL--VNPQIHIAGLHKALKGVTHYLALKALISLVTGVLVWLSLLALGIKF 222

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  G++  ++  IP  G  I+     +  L+      A  +         ++   L P 
Sbjct: 223 ALLWGIVAFVLNFIPNIGPVIAGIPPVLQALLLNTPLEAGLVAGLFVSIHMLLGNLLEPR 282

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L+G  + L  L  F  L+     +G +G+ +   L ++  ++ +
Sbjct: 283 LLGRGLGLSSLVVFLSLIFWGWLLGPVGMLLSVPLTSVCKILME 326


>gi|255089473|ref|XP_002506658.1| predicted protein [Micromonas sp. RCC299]
 gi|226521931|gb|ACO67916.1| predicted protein [Micromonas sp. RCC299]
          Length = 932

 Score = 55.2 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 61/188 (32%), Gaps = 7/188 (3%)

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
                +++ L  +  +  LF         + +L  L   +           + + +R  F
Sbjct: 694 VAGGIVNFILKAVVFLTVLFHILNSELDPAVRLVELIP-VNDRVKDVAVHSLTRGVRGVF 752

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGN 274
           +    +A+         +   GV       + +   A++P  A        ++ LL KG 
Sbjct: 753 VSCAKLALFHAAFTWVTFRAFGVHFVYTSTLASGATAILPLLASWSVSVPAALGLLAKGE 812

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM--GLLGLFIGP 332
                 L +   + L  VD  +          +        +VGG+      L G  +GP
Sbjct: 813 GLKGFALVVMHWVVLIFVDIDIY---QSEIQVVHPYIVGLSVVGGMSVWDHALEGAVLGP 869

Query: 333 VLMALIAV 340
           +L+  +A 
Sbjct: 870 LLVTALAT 877


>gi|47568322|ref|ZP_00239024.1| hypothetical protein membrane Spanning protein [Bacillus cereus
           G9241]
 gi|47555015|gb|EAL13364.1| hypothetical protein membrane Spanning protein [Bacillus cereus
           G9241]
          Length = 337

 Score = 55.2 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 54/324 (16%), Positives = 115/324 (35%), Gaps = 25/324 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +G  R++++ I+ + LY LK     +L   I+ F           K   +   +    
Sbjct: 9   RSRGFQRFLVLIILALVLYGLKSMINLILITFILTFLMDRFQRFISKKLNVNRKIVIACL 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++      L        +++ +L+ +  L  Q+           P      +     
Sbjct: 69  YIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQN-----------PPDNEIIKYALST 117

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           ++  +  K + +      G+D I +  +  G + L   LS+I  +  L     +   I  
Sbjct: 118 INGMEVSKYIEQ------GVDVIYQSIANIGKVSLQILLSLILSLFFL----LEKERIIT 167

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                 E     ++++I+    +  RS         +IA+   ++   A  + G P  + 
Sbjct: 168 FTSKFKESKLKIFYEEIAYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLLV 227

Query: 244 LGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L V+  ++ +IP  G  IS   +SI     G +     + ++  +   +    L P  + 
Sbjct: 228 LAVMIFLLGLIPVAGVIISLFPLSIIAYNVGGVMYVVYILMFITVIHALESYFLNPKFMS 287

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLL 326
               LP   TF  L+     +G+ 
Sbjct: 288 AKTNLPIFYTFMILIFSEHFLGIW 311


>gi|153933656|ref|YP_001383510.1| putative transporter [Clostridium botulinum A str. ATCC 19397]
 gi|153936965|ref|YP_001387059.1| putative transporter [Clostridium botulinum A str. Hall]
 gi|152929700|gb|ABS35200.1| putative transporter [Clostridium botulinum A str. ATCC 19397]
 gi|152932879|gb|ABS38378.1| putative transporter [Clostridium botulinum A str. Hall]
          Length = 366

 Score = 55.2 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/299 (13%), Positives = 96/299 (32%), Gaps = 13/299 (4%)

Query: 46  PIYSSFISKKEESSTFLAVI----ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ 101
           P+   F  + +       +I        V  +    L  +       + ++   +     
Sbjct: 62  PLVKLFERRFKIKRNLSILICYVITLGIVALV----LSMIVPKVFQSIMDIFQNIPYFTN 117

Query: 102 HGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK--TNGIDFIPRFASRFGMI 159
            G      ++++      S +         + K L +      + G++ I      F   
Sbjct: 118 KGY---EMVNNLLANEEISNIINSSNVFKGNYKDLIDKIAGFTSVGLNTILNQTISFTTF 174

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
            ++    +I  I  L    +  F+  + +  +    +     +  R V  +I+       
Sbjct: 175 MVNLVFGLIIAIYVLNDREKFAFNGKRVVFLIFREKYGEKIIEFFRTVNSMIKLYIGIKA 234

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNAT 279
           + ++  GL+      +   P  + + +I  +  MIP   P      ++ + +      A 
Sbjct: 235 LDSLIIGLLALIGLIILKSPYALLIALIVCVTNMIPYFGPFIGMIPAVVINLFYVPVKAL 294

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
            + ++  +        L P LVG  + L       G+  G    G+ G+ +    MA+I
Sbjct: 295 WVLIFLFLLQQFDAWYLEPKLVGDKVGLSPFLIILGITIGGSLFGVWGMLLASPAMAVI 353


>gi|269962256|ref|ZP_06176609.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833087|gb|EEZ87193.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 80

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 36/66 (54%)

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +VD  L+P ++G  +++P      G +GG+ + G+LG+FIG   +A    ++ + + A  
Sbjct: 1   MVDNFLKPLILGRGLEVPMPIVLIGAIGGMMSGGILGMFIGAAFLAAGYQVFMKWVEAQT 60

Query: 351 ENKEKI 356
           +  E  
Sbjct: 61  DEPETP 66


>gi|301021869|ref|ZP_07185831.1| conserved hypothetical protein [Escherichia coli MS 196-1]
 gi|299881421|gb|EFI89632.1| conserved hypothetical protein [Escherichia coli MS 196-1]
          Length = 281

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 77/200 (38%), Gaps = 3/200 (1%)

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++   
Sbjct: 48  NLHMSPERMLQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKM-RF 106

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
             +    +   + R +  V     L   + ++  G+++     L GV   +   V+  ++
Sbjct: 107 ALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGVIVWLGLELMGVQFALMWAVLAFLL 165

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             +P  GA IS     I +L+   ++    +     +   ++   L P ++G  + +  +
Sbjct: 166 NYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMSTM 225

Query: 311 PTFFGLVGGVRTMGLLGLFI 330
             F  L+     +G +G+ +
Sbjct: 226 VVFLSLLIWGWLLGPVGMLL 245


>gi|167888953|gb|ACA09746.1| PsfE [Pseudomonas putida]
          Length = 356

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/346 (14%), Positives = 117/346 (33%), Gaps = 12/346 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + + ++  +++F+   ++  L G  APVL+ +++ +    +  S    +         +A
Sbjct: 15  DEEAVVLAVLLFLAFTAVLTLGGMLAPVLAGMVLAYLMQGLVVSLERMRMPG-----GVA 69

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
              V  LF+   L L +  ++        + L N+    + +W + +             
Sbjct: 70  VGLVFALFMG--LLLVFIVVVVPLLWHQLITLFNELPGMLAKWQTLLLLLPERYPHLVSD 127

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
               Q++++      K     +   F+     + ++  + ++ + I +FFF +D   I Q
Sbjct: 128 EQVLQAIEVARGEIGKF--GQWALTFSLSSLPLLVNIMIYLVLVPILVFFFLKDRQMIGQ 185

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +         A   +++ ++ + I +   G  I     G      + + G+     L +
Sbjct: 186 WVRGYLPR-ERALITRVAHVMNRQIANYIRGKVIEIFICGGATYIGFVVLGLNYAALLAL 244

Query: 247 ITAI--MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           +  I  +    G   ++   + I L   G       L     I   +    L P L    
Sbjct: 245 LVGISVVVPYVGAVVVTVPVLLIALFQWGWSDQFIYLMTVYGIIQVLDGNVLVPLLFSEA 304

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           + L  +     ++      G  G+F    L  L   +         
Sbjct: 305 VNLHPVAIICAVLLFGGLWGFWGVFFAIPLATLFKAVLDAWPRKEP 350


>gi|256828453|ref|YP_003157181.1| protein of unknown function UPF0118 [Desulfomicrobium baculatum DSM
           4028]
 gi|256577629|gb|ACU88765.1| protein of unknown function UPF0118 [Desulfomicrobium baculatum DSM
           4028]
          Length = 390

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 58/160 (36%), Gaps = 5/160 (3%)

Query: 180 DGFSISQQLDSLGEHLFPAYWKKIS---RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
           D   +S  + SL        +++++   R    V+        +IA+    +      L 
Sbjct: 202 DLPRLSASVCSLENSKLGFVYREVAGSIRDFATVLGKALEAQFVIALVNAALTAIGVSLL 261

Query: 237 GVPSHV-ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           G+ S +  L VI  + + IP  G  IS   + +  L    +       +   +   +   
Sbjct: 262 GLGSSMAFLTVIVFLCSFIPVLGVFISSVPICLIALQDSGLTTMILGIVMITVIHLLEGY 321

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
            L P + G  +++  +     L  G +   + GL +G  +
Sbjct: 322 VLNPRIYGSYMRINPVIVLVILTVGAKLFHIWGLVLGVPI 361


>gi|253682258|ref|ZP_04863055.1| membrane protein [Clostridium botulinum D str. 1873]
 gi|253561970|gb|EES91422.1| membrane protein [Clostridium botulinum D str. 1873]
          Length = 369

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/329 (12%), Positives = 103/329 (31%), Gaps = 3/329 (0%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P + A +I +   PI        + + T   +   + ++ L  +  + +         
Sbjct: 43  LMPFIVAFVIAYILNPIMKFIEKNLKVNRTIGVLFTYILIIILITIFSMTVIPKVFNSGM 102

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           ++V K+    Q       W+S      + +      +       I   + + +  +    
Sbjct: 103 DMVDKMPEFAQRMY---LWVSGHISSKFMNSGSGSFVRDNAGKWIEKFSSMSSAWLAVAL 159

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     ++    +I  I  L+   +   +    +  L  +        ++R V ++
Sbjct: 160 NQIVSTTASLINLIFGLIISIYMLYDKEKFKQNSKNLVYILLGNRSGNKLINVARNVDEM 219

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + +      I +   G++      L   P  + + +I  I  MIP   P         + 
Sbjct: 220 VGTYIGIKAIDSFIIGIICLIGLMLFKCPYVLIISIIVMITNMIPYFGPFMGMIPPFLIN 279

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +  +   A  + ++  +        L P LV   + +       G+       G++G+ +
Sbjct: 280 VFYDPKKAFGILIFLVLLQQFDAWILEPKLVSDRVGVSPFLVILGITVFGSLFGIIGMLL 339

Query: 331 GPVLMALIAVIWKESIMAIKENKEKISSN 359
              +MA++ +          E   K   +
Sbjct: 340 ASPIMAVLNIYVGGWFRRKVEEYNKTQKS 368


>gi|229541157|ref|ZP_04430217.1| protein of unknown function UPF0118 [Bacillus coagulans 36D1]
 gi|229325577|gb|EEN91252.1| protein of unknown function UPF0118 [Bacillus coagulans 36D1]
          Length = 385

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/353 (11%), Positives = 106/353 (30%), Gaps = 17/353 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS----------KKEESSTFLAVIATVS 69
           IL +L  +     P+L    I +    +                 +        + + V 
Sbjct: 29  ILGALGAIWHVAFPLLLGAAIAYVLNILMKKVERVYFPNAQNKFIRATRRGVSILFSFVV 88

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +  +  + +L +    +     L+  +       +    +     G   +   +   L  
Sbjct: 89  IFGIVSILVLIIVPQLIQAFTVLIDAIPRVYARSL---DYFQSNSGKYSSLGKFIASLQV 145

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ-- 187
                    T   +  +  I               +++I  II   +       ++ Q  
Sbjct: 146 DLDAVTKKLTASLSKVVTGILNSTFSIAGALTSGVMNLIIAIIFAIYILAAKEKLAVQAD 205

Query: 188 --LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             + +  +         +  +  +   S  +G  + A+  G +     +L   P    +G
Sbjct: 206 KVVRAFLKKQTADRLYYVLGVANRTFSSFIVGQCVEAVILGSLCTLGMFLFQFPYAAMVG 265

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
              +  A+IP        A   ++++  +   A    ++  +   +    + P +VG  I
Sbjct: 266 AFISATALIPVVGAYLGAAFGAFMILTVDPMQAVFFLIFIVVLQQVEGNIIYPRVVGSSI 325

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            LP L     ++ G    G++G+  G  + A +  +  + +    +    I  
Sbjct: 326 GLPGLWVLAAVIIGGGLGGVVGMLFGVPVAATLYKLLSDQVQKRLQTPSGIEE 378


>gi|52078982|ref|YP_077773.1| membrane protein YdbI [Bacillus licheniformis ATCC 14580]
 gi|52784355|ref|YP_090184.1| YdbI [Bacillus licheniformis ATCC 14580]
 gi|319648714|ref|ZP_08002925.1| YdbI protein [Bacillus sp. BT1B_CT2]
 gi|52002193|gb|AAU22135.1| conserved membrane protein YdbI [Bacillus licheniformis ATCC 14580]
 gi|52346857|gb|AAU39491.1| YdbI [Bacillus licheniformis ATCC 14580]
 gi|317389133|gb|EFV69949.1| YdbI protein [Bacillus sp. BT1B_CT2]
          Length = 346

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/310 (17%), Positives = 107/310 (34%), Gaps = 22/310 (7%)

Query: 13  RWMIMFIILVS-LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           R   +F++L   LY  +     +L   I  F    + +         + F+ V   + + 
Sbjct: 14  RRFSVFVVLAGVLYLFRSMMNLILLTFIFTFLMNRLENVIRGFL---NRFIKVSQRLIIS 70

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
           CL+    + L   G++    +V+++    + G  +      IP     + ++        
Sbjct: 71  CLYAALAIALSIGGVVYYPVIVTQIQQLIKQGKHIASHPDSIPFLDMITGMFGDINLTSY 130

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
             K          G++FI  + +        + L ++  ++   F   +   +   +D  
Sbjct: 131 LEK----------GLNFIYTYITDIST----FGLQVVMSLVLSMFLLIEKDKVMSLMDKF 176

Query: 192 GEHLFPAYWKKIS---RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                  ++++I+   +   +          IIA     +   A  + G P    L V+ 
Sbjct: 177 KTSKIAIFYEEIAYFGKKFTRTFGKVLEAQFIIATINCALTTIALAIMGFPQLFGLAVMV 236

Query: 249 AIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             + ++P  G  +S   +SI     G I     L L   I   I    L P L+    +L
Sbjct: 237 FFLGLVPVAGVVLSLIPLSIIAYSIGGIAYIVSLVLVIMIVHAIEAYFLNPKLMSAKTEL 296

Query: 308 PFLPTFFGLV 317
           P   TF  L+
Sbjct: 297 PIFFTFIVLI 306


>gi|217977228|ref|YP_002361375.1| protein of unknown function UPF0118 [Methylocella silvestris BL2]
 gi|217502604|gb|ACK50013.1| protein of unknown function UPF0118 [Methylocella silvestris BL2]
          Length = 345

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/332 (15%), Positives = 104/332 (31%), Gaps = 30/332 (9%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I F+++ +LYF    F PV  AL      WP+  +  ++       +A           
Sbjct: 13  IIAFLVVGALYFADAVFEPVAFALFAIAVVWPLQKALETRLPRGLALIAT---------- 62

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
               + +    ++++  +V+        G  + +WLS              + +  + L+
Sbjct: 63  ----VLVTLIVVVKLTSMVAW------GGGQIGQWLS-----ANFDRFQALYFAWAKWLE 107

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                        F   +  R          S+I   + +F F   G   ++        
Sbjct: 108 QHDIFIATVVAERFNVLWLLRLFQTVALRLNSLIGFSLLIFIFLAMGLLEAEAFSKNLRT 167

Query: 195 LFPAYWKKISRIVPKV---IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
           +     +++           R   L  T+ +I  GL++     L G+    A GVI+  +
Sbjct: 168 VGGEAGERLIAAGAATARKFRRYMLVRTVASILTGLIVWGFATLVGLELAAAWGVISFAL 227

Query: 252 AMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
             IP   P+              G+      +     +  F++     P      + +  
Sbjct: 228 NYIPFIGPLIATVLPALFGFAQTGSWETGLLILAVLTLVQFLIGSYFEPLFTAKTLSISP 287

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
               F +       GL G FIG  ++     +
Sbjct: 288 FAVVFAVFFWGFIWGLPGTFIGVPILIACVTV 319


>gi|71897747|ref|ZP_00679973.1| Protein of unknown function UPF0118 [Xylella fastidiosa Ann-1]
 gi|71732302|gb|EAO34356.1| Protein of unknown function UPF0118 [Xylella fastidiosa Ann-1]
          Length = 369

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/347 (13%), Positives = 111/347 (31%), Gaps = 20/347 (5%)

Query: 7   NPQGIMRWMIMFIILVS--LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
            PQ  +  +++  + V   L+  +    PVL A+       PI  +    +   +    +
Sbjct: 25  RPQAPLSLVVLATLAVGYTLWATQAVILPVLLAVFFALVGNPILRALGHIRIPRAIGALL 84

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +    +    ++         +         +  A      V R +  +   M  +    
Sbjct: 85  LLCFGISGTVVL--------SVELAGPASEWIQQAPDKIRQVARQVRHLTRPMQQANQAV 136

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           + L+     +   ++      +           M      +S++ +I+  FFF   G  +
Sbjct: 137 ESLARAADGETERQSQTVRTRLYNPYTLL----MDTHKLVISVLGVILLTFFFMVFGEKL 192

Query: 185 SQQLDSLGE--HLFPAYWKKISRIVPKVIRSTFLGMTIIAIG-EGLVLGSAYWLAGVPSH 241
            ++  +L    H        +  +  ++ R       I A+               +   
Sbjct: 193 QRKAIALLPNHHQQRFTASILRNLEHEISRYVLTISVINALVGLIFSGLLLLLSIPLQEA 252

Query: 242 VALGVITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           +  G + A++   P   P+      + I L+       A    L   +   +  + + P 
Sbjct: 253 LLWGTVVALLNFAPYVGPLIGVLLMLLIGLVQFHESSRALLPALLYLMLHTLEGQLITPI 312

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKES 345
           ++G  + +  L     L+      GL+GL +  P+L+ +  V+ +  
Sbjct: 313 ILGHRMAISPLMLIVALLLFGSLWGLIGLLLAVPMLVCIKMVMSRIE 359


>gi|302867293|ref|YP_003835930.1| hypothetical protein Micau_2820 [Micromonospora aurantiaca ATCC
           27029]
 gi|302570152|gb|ADL46354.1| protein of unknown function UPF0118 [Micromonospora aurantiaca ATCC
           27029]
          Length = 371

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 68/184 (36%)

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           +    +   I      L      A  ++I R   +++     G  +I++  G +     +
Sbjct: 166 YLMVLEAPKIVAATLRLTGDGAAARLRRIGRDSSRIVTGYLSGNLLISLICGGLTFVVLF 225

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           L GVP    + +  A+  +IP          +       +      + ++  +   + + 
Sbjct: 226 LLGVPFAAVIALAVAVFDLIPLVGATLGALAAAGAAFLHSPTAGLVVLVFFVVYQQVENH 285

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            L+P ++G  ++L  L     ++  V   GL+G  +      ++ V+ +E   A +E   
Sbjct: 286 LLQPVIMGRAVRLNPLTVLVSVLLSVELAGLVGALLAIPAAGIVQVLLREFAPAGREALP 345

Query: 355 KISS 358
           + + 
Sbjct: 346 QPAD 349


>gi|210620919|ref|ZP_03292336.1| hypothetical protein CLOHIR_00279 [Clostridium hiranonis DSM 13275]
 gi|210155131|gb|EEA86137.1| hypothetical protein CLOHIR_00279 [Clostridium hiranonis DSM 13275]
          Length = 387

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/341 (16%), Positives = 122/341 (35%), Gaps = 17/341 (4%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFIS-KKEESSTFLAVIATVSVMCLFIVPLLFL 81
            +  L  F      A ++ F    I +  IS K +  S       ++ +  L    L +L
Sbjct: 43  FIAILYPFIIGFAIAYLLNFILKFIENRIISEKMKGKSPARVRAISMLLTYLVAGTLCYL 102

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF- 140
           F + +         +         +P ++++    +  ++L  +    P S++IL   + 
Sbjct: 103 FVHFV-----WPELLESIIGLFNDIPNYVNN--ATVMINKLIEEFNLTPASMEILESKWK 155

Query: 141 -LKTNGIDFIPRFASRFG---MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            L    ++F+       G   M+ +    +I+  +I   +  +D          +   +F
Sbjct: 156 ELTDFIMNFMTDIIPVIGNTIMVVISSLWNIVLGVIVSIYLLKDKEKFFAISKKITYAIF 215

Query: 197 PAYWK----KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                    +++    K+      G  + +    ++      +  +P  + + VI  +  
Sbjct: 216 NREHSYKILELTHRANKIFGKFLGGKILDSFIIAIITFVILTIFKMPYTLLVTVIVGVTN 275

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +IP   P      S+ L+   +   A  L +   I   +    + P ++G  I +     
Sbjct: 276 VIPFFGPFFGAIPSVILVRFVSPIKAFWLLIIILIIQQLDGNVIGPKILGDSIGVSAFWI 335

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            F L+   + +GL+G+ +G  L A I  I K+      + K
Sbjct: 336 LFALLIAGKFLGLVGMLLGVPLFAFIYSIIKDVTEERLDKK 376


>gi|222100216|ref|YP_002534784.1| hypothetical protein CTN_1242 [Thermotoga neapolitana DSM 4359]
 gi|221572606|gb|ACM23418.1| Hypothetical Protein CTN_1242 [Thermotoga neapolitana DSM 4359]
          Length = 338

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/355 (14%), Positives = 114/355 (32%), Gaps = 24/355 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R  + +       + + I  +        FA +   +       P+   F  K      
Sbjct: 4   VRRFVEDKAFFFTTLYVLISFLVFKVFPEVFAVITMMIFFTLLLDPV-VRFFEKMRLGKR 62

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              V+A +    + +  L  +      E    +  +                   G++ +
Sbjct: 63  VSRVVALLLFFFVVVYSLYVIIPPVFNEFGNFIEFIT------------------GVFEN 104

Query: 121 ELWTKHLSHPQSLKILSE--TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
           ++W  ++  P+ + +  +  TFL+    D +    S     FL     ++F +  L +  
Sbjct: 105 KVWRDYVRSPELVPVFDKIMTFLEPKLNDLLNYVFSLVTTNFLSVTTVVVFTLFGLGYTI 164

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                I+    ++         +     V + +      + I A+  GL     +    +
Sbjct: 165 FYVREIADFFVAIYPKSAREEARDFLISVYRSMGRYIRVIFINALIIGLSYWIVFETFDL 224

Query: 239 PSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
                + +   +   IP  G  + +  V ++ L  G       L    A+ +      + 
Sbjct: 225 KYSAIISLWAFVTNFIPIVGVVLEYVPVLLFSLTLG--VKGVLLIALFAVLIHAAAFIVF 282

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             L+ G  KL  +     ++   +  G+ G F+G  L     V WK+ +  + E+
Sbjct: 283 IQLMKGLEKLNPVYIILSILFFGKLFGMFGSFVGVPLALFFKVFWKKFLEPLLES 337


>gi|157370131|ref|YP_001478120.1| putative transport protein [Serratia proteamaculans 568]
 gi|157321895|gb|ABV40992.1| protein of unknown function UPF0118 [Serratia proteamaculans 568]
          Length = 350

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/334 (15%), Positives = 120/334 (35%), Gaps = 25/334 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           M  T+L  + +   +++ ++++ L  +K       P L AL +     P+ +     +  
Sbjct: 1   MGRTLLTDRSLRLAIMLAMLVIILAGVKAAVDVVVPFLLALFLAMVLNPLVAQLERWRVP 60

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
               +                L +    +L M  +       N+    +P++   +   +
Sbjct: 61  RVLGV---------------SLLVVVVVVLLMLFVGVLGASLNEFARSLPQYRGLMLEKL 105

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
              + +    +   S + + +    +  ++ I R  SRF     +  L ++ ++  LF  
Sbjct: 106 SELQHYADRFNITISTEAMLQYVDPSAAMNLITRLLSRFSGAMTNIFLLLMTVVFMLFEV 165

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
               + + Q LD       P+      +     +    L  T I++  G+++ +   +  
Sbjct: 166 QLLPYKLQQALDK------PSEGMANIQRALDGVTRYLLIKTAISLATGIIVWAFLAVID 219

Query: 238 VPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           V      G++  ++  IP  G+ I+     I  L+     +A  +         ++   L
Sbjct: 220 VRFAFIWGLLAFLLNYIPNIGSVIAAVPPLIQALLFNGFGDALVVAAGFITINLVIGNML 279

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            P ++G  + L  L  F  L+     MG +G+ +
Sbjct: 280 EPRVMGRGLGLSTLVVFLSLIFWGWLMGPVGMLL 313


>gi|260435172|ref|ZP_05789142.1| hypothetical protein SH8109_0741 [Synechococcus sp. WH 8109]
 gi|260413046|gb|EEX06342.1| hypothetical protein SH8109_0741 [Synechococcus sp. WH 8109]
          Length = 361

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 105/307 (34%), Gaps = 15/307 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
            F++   L     F    L+A +I F    +   +++++     +  V   +  + L + 
Sbjct: 21  AFVLKGLLVQFAPFPGLFLTAALIAFLLD-LPCRWLAQRGLPRAWAIVSVVLVTLGLLVW 79

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             + L    + ++ +L+S    +        +W+          +LW      P     L
Sbjct: 80  AAVALVPLLIEQLSQLIS---TSPSLLTAAEQWIDR-------GQLWALDHGLPADFADL 129

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           S   +       +    S+  +  L   +     ++ +          +  +        
Sbjct: 130 SSDLVAQ--FSRLATQLSQRLLGLLGATVGTTINVVIVLVLAVFLLLGADPIVDGLARWL 187

Query: 197 PAYWKKISRI-VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           P  W+ + ++ + +  R  F G  ++A+         +    +P  V   V+     ++P
Sbjct: 188 PDRWRDLVKMTLERTFRGYFAGQVVLALILSGGQLLVFTALNIPYGVLFAVLIGFTTLVP 247

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
             + +S  +VS  L ++ +      L     +   IVD+ ++P L+G  + L        
Sbjct: 248 YASAVSIVSVSAVLAVQ-DPRTGLELLAAAIVVGQIVDQVIQPRLMGSIVGLQPAWLLIA 306

Query: 316 LVGGVRT 322
           L  G R 
Sbjct: 307 LPIGARV 313


>gi|322371360|ref|ZP_08045911.1| permease [Haladaptatus paucihalophilus DX253]
 gi|320549058|gb|EFW90721.1| permease [Haladaptatus paucihalophilus DX253]
          Length = 379

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 58/354 (16%), Positives = 125/354 (35%), Gaps = 42/354 (11%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I+F I+ ++ ++  F   V+  L + + + PI      + +      A ++ V ++   
Sbjct: 8   LIVFGIIAAVAYM--FLPWVVFGLFVYYVARPINRYLGRRIKG-KNLSAALSLVLIVVPV 64

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           ++ L   F   + ++            +     R L  +P     ++      +   +L+
Sbjct: 65  VLFLGVFFSIAIGQLAAFA--------NTDVAARLLGGLPTTTIPNDPNKLLDTATTTLQ 116

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
             S          F+   AS   M+FL   L    ++              +      E 
Sbjct: 117 KPSVQSALAAVQAFVGGIASSIFMLFLSLLLGFFLLV-----------EDERLARWGKEQ 165

Query: 195 LFPAY--WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--------VPSHVAL 244
           L      +      V   + S + G T+      ++    Y L          +P+ + L
Sbjct: 166 LLGDDRVFTDYLEAVDAGLNSIYFGYTLTIFVIMILTAVIYNLFNLFAPGNLLIPATILL 225

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYL---LIKGNIFNATCLFLWGAIELFIVDKT----L 296
            VIT I  ++P  G  + + A++ +L    I+ +       F++        D      +
Sbjct: 226 AVITGIFTLVPLVGRSVVYLAIAAFLALGAIQRDPNALWYPFVFFLFMTLAFDNVVRTYI 285

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           RP+L G           F  + G    G  G+F+GP+LM ++    + ++  ++
Sbjct: 286 RPYLSGKL--FHLSLVMFAYLLGPILFGWYGVFLGPLLMVIVVQFLQVAVPQLR 337


>gi|195061543|ref|XP_001996016.1| GH14051 [Drosophila grimshawi]
 gi|193891808|gb|EDV90674.1| GH14051 [Drosophila grimshawi]
          Length = 820

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 74/210 (35%), Gaps = 5/210 (2%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           I       G   +++ L +I    ALF+           +       + A   K++  + 
Sbjct: 603 ILSLLLSGGQACIEFILDMIVFFTALFYLLTASQEKYAPMQITKYMGYSASGIKVADALE 662

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSI 267
             I    + M   +   GL     + + G         + A++A  P  G+        +
Sbjct: 663 NSITVVLVSMFKCSTFTGLFTWLVHTVFGARIVFLPSALAALLAAAPFLGSYWCAVPAFL 722

Query: 268 YLLIKGNIFNA-TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
            L +  + F A   LFL         +  +   L GG            + GG+  +G  
Sbjct: 723 ELWLAQDRFYAGLILFLLQFFVPSSFETAIYADLKGGG---HPYLNGLAIAGGMYWIGWQ 779

Query: 327 GLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           G   GP+++     +++ + +A++ N+E+ 
Sbjct: 780 GAIFGPLMLCFFIGLFEVATLAMRNNQEEP 809


>gi|209885032|ref|YP_002288889.1| putative transport protein/permease [Oligotropha carboxidovorans
           OM5]
 gi|209873228|gb|ACI93024.1| putative transport protein/permease [Oligotropha carboxidovorans
           OM5]
          Length = 376

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/334 (11%), Positives = 86/334 (25%), Gaps = 8/334 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
              +L+  +        + S +++G     +                ++  V +  +   
Sbjct: 28  FAALLIFAWEFAATLFLIFSGILLGVALTAMTKLLKRVMPGPHAGRLLVICVVLAAMLAG 87

Query: 77  PLLFLFYYGMLEMK--------ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
                      +          ++V+       HG                    T   +
Sbjct: 88  IFTLGGSTIASQAAVLSGTLKAQVVNLKTFLESHGFDASYLDLSAIAASPNGTAATTTPT 147

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
            P     L       +G   I     +  +  +    +   ++     F        + L
Sbjct: 148 SPNVSHNLPSAGAIASGGGAIVSQTLKIILGTVGAVGNFFIVLFLGLAFAAQPGVYRKGL 207

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            ++         + +   +   +    +   I      +V        G+P    LGV  
Sbjct: 208 IAMSPAAVRPQMEALIDRISSTLERWLIAQMITMSVVFVVTWLGLLAIGIPGAFILGVQA 267

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++  IP    +    V +   I          F+       +    L P +    I +P
Sbjct: 268 GLLTFIPTVGALVAGIVILLASISSGWVAVGSAFVLLMAVHALESYILTPIIQREAIDIP 327

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
               F   +      G+ GL +   +MA++ VI 
Sbjct: 328 PATLFAFQILLGVVFGVWGLALALPVMAIVKVIL 361


>gi|222479558|ref|YP_002565795.1| permease [Halorubrum lacusprofundi ATCC 49239]
 gi|222452460|gb|ACM56725.1| permease [Halorubrum lacusprofundi ATCC 49239]
          Length = 431

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/354 (14%), Positives = 110/354 (31%), Gaps = 31/354 (8%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             ++ + +   Y +  F    +  L   + + PI     S    S    A +  +SV+  
Sbjct: 22  AFVLLLGVAIAYVVGSFIGLTVLGLFGYYATRPICVRLRSVT-GSRQLAATLTALSVL-- 78

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
                + +    ++    L   V      G  V   ++ I G         + L     L
Sbjct: 79  -----VPILLLLVVVGLRLFQVVQRQFGDGEFVGTLVARITGIDALPAEQREQLVS--LL 131

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
              S        +      A       +     +       +F   +   +S+ L  L  
Sbjct: 132 LNPSSILDAGGSVWSNVGAAVTALQGVVGGLFLLGLATTLAYFLLANDTDVSKTLTELVG 191

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--------VPSHVALG 245
               +     +  V   + S F G  +  +   ++    Y            VP  +  G
Sbjct: 192 G-RDSTAYAYAIAVDADLESVFFGNLLFVVASSILATVTYAATNLVAPPGLQVPMVLVAG 250

Query: 246 VITAIMAMIPGGAP-ISFTAVSIYL---LIKGNIFNATCLFLWGAIELF------IVDKT 295
            +T + ++IP     I +  +   L    +  +    + +F+   +  +      +    
Sbjct: 251 FLTGLASLIPVVVGKIVYIPIVALLGFQAVSTDQGQGSLVFVGVVLVAYVLLLDILPQSF 310

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           L+P+L G   +L  +   F  + G    G  G+F+ P+L  L+    +  +  +
Sbjct: 311 LQPYLSGR--RLNAILLLFAYLLGPILFGWYGIFLMPILFVLVLEAIRIVLPEL 362


>gi|188535406|ref|YP_001909203.1| Putative inner membrane protein YhhT [Erwinia tasmaniensis Et1/99]
 gi|188030448|emb|CAO98342.1| Putative inner membrane protein YhhT [Erwinia tasmaniensis Et1/99]
          Length = 353

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/337 (13%), Positives = 119/337 (35%), Gaps = 22/337 (6%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              +++   + +IL  +        P L AL       P+ S  I +       +A++  
Sbjct: 11  QNILLKLATLVVILAGIKLSAEIVVPFLLALFFAIVINPLVSVLIRRGVRRGMAIALVMV 70

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V ++ L +V ++      + +  E+  ++   +   +                    +HL
Sbjct: 71  VMLLLLTLVGIMVAGS--LQQFSEVYPQLQAQSAQKLGT-----------------LQHL 111

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +    L I S + ++      +   A+     F      ++ +I+ + F   +   +  +
Sbjct: 112 AARFHLNISSSSLVQRLDPGAMMDVATTMLKQFSGVMTQLVLVIMTVIFMLIEVHHLPYK 171

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L      + P           K +        +I++  G+++  A    G+   +  G++
Sbjct: 172 LRYAL--INPQIHIAGLHKALKGVTHYLALKALISLITGVLVWLALLALGIKFALLWGIV 229

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             ++  IP  G  ++     +  L+     +A  +         ++   L P +VG  + 
Sbjct: 230 AFVLNFIPNIGPVLAGIPPILQALLLNTPLDAGLVAALFVSIHMLLGNLLEPRIVGRGLG 289

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L  L  F  L+     +G +G+ +   L ++  ++ +
Sbjct: 290 LSSLVVFLSLIFWGWLLGPVGMLLSVPLTSVSKILME 326


>gi|145631089|ref|ZP_01786864.1| hypothetical protein CGSHi22421_05505 [Haemophilus influenzae
           R3021]
 gi|144983374|gb|EDJ90856.1| hypothetical protein CGSHi22421_05505 [Haemophilus influenzae
           R3021]
          Length = 287

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 89/259 (34%), Gaps = 9/259 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             + +PQ +    I+    +S+YF     AP+L AL++ +      +      +      
Sbjct: 11  RRLSDPQAMGLLAILLFGFISIYFFGDLIAPLLIALVLSYLLEMPINFLNQYLKCPRMLA 70

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++   S + L  +  L L      +   L+S +            WL ++P        
Sbjct: 71  TILIFGSFIGLAAIFFLVLVPMLWNQTISLLSDLPAMFNKS---NEWLLNLPKNYPELID 127

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           ++   S   S++     F ++     +        M  +   +    + + +FF  +D  
Sbjct: 128 YSMVDSIFNSVREKILGFGESAVKLSLASI-----MNLVSLGIYAFLVPLMMFFMLKDKS 182

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + Q +           +K + + + + I +   G  +  +   L+    + + G+   +
Sbjct: 183 ELLQGVSRFLPKNRNLAFK-VWKEMQQQISNYIHGKLLEILIVTLITYIIFLIFGLNYPL 241

Query: 243 ALGVITAIMAMIPGGAPIS 261
            L     +  ++P  A + 
Sbjct: 242 LLAFAVGLSVLVPILAQLL 260


>gi|302834844|ref|XP_002948984.1| hypothetical protein VOLCADRAFT_120703 [Volvox carteri f.
           nagariensis]
 gi|300265729|gb|EFJ49919.1| hypothetical protein VOLCADRAFT_120703 [Volvox carteri f.
           nagariensis]
          Length = 252

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 79/211 (37%), Gaps = 5/211 (2%)

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS---RI 206
            ++ + F      + L  +  +I  F F  D  +IS+ + +L        + +++    +
Sbjct: 10  AKYTAVFLKSVAKFSLQALVSLILGFLFVWDMPTISRGISTLRHSRLAPVFNEVAPVLTV 69

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAV 265
             ++          IA+    +  +  WL  +P    L +   + + IP  G  IS   +
Sbjct: 70  FGQLFGKALQVQAQIAVVNTALTAAGMWLLAIPGIGLLSLFVFLCSFIPIMGCIISTVPI 129

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
               L +        + +  A+  F+    L P +    +KL  L     L+     +G+
Sbjct: 130 GFVALTEYGFVKLAMVIIMVALVHFVEAYALNPAIYSAHLKLHPLMVLSVLLVAEHNLGV 189

Query: 326 LGLFIG-PVLMALIAVIWKESIMAIKENKEK 355
            GL +  P  +  +  + +    +I+E  E+
Sbjct: 190 WGLLLAVPSTVFALDYLIRYPNQSIREVGER 220


>gi|260433111|ref|ZP_05787082.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416939|gb|EEX10198.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 333

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/325 (15%), Positives = 111/325 (34%), Gaps = 29/325 (8%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF--LFYYGMLE 88
            AP+  AL++G    P+               + +  V+   +    LL   L    + +
Sbjct: 34  VAPITLALVLGVVVAPLADKLERAGCPRVVSASALLFVTSTVIVTAFLLLEPLISALVEQ 93

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           +  +  ++            W++ +   +   E   + +         +ET      +  
Sbjct: 94  LPAIKRELR----------AWVAAMSEFIRGIETLGREIEETVGADGAAETESALPSVMD 143

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
               A  FG         I+ +I  LFFF      +      L E L+            
Sbjct: 144 ALWLAPNFGS-------KILILIGTLFFFVLTRPDLYAAAGPLQERLY---------QAD 187

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           + +   F  +T++ +G G V  +A  L G+   V  G+   ++  +    P+      + 
Sbjct: 188 RAVYRYFAAVTLVNVGLGAVTATALGLIGINDAVIWGLAAGLLNFVLYLGPLMILTGLLI 247

Query: 269 LLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
             +      A  L     + + + + + + P  VG  +++  L  F  ++ G+   G +G
Sbjct: 248 AGLTQFGGAAALLPPLVFLAINLSEAQFVTPAFVGQRLQMNPLVVFIAIIFGLWLWGPVG 307

Query: 328 LFIGPVLMALIAVIWKESIMAIKEN 352
             +   ++    V+    +M+  EN
Sbjct: 308 AIVALPILLWFGVLMNPEVMSPIEN 332


>gi|126729981|ref|ZP_01745793.1| hypothetical protein SSE37_16423 [Sagittula stellata E-37]
 gi|126709361|gb|EBA08415.1| hypothetical protein SSE37_16423 [Sagittula stellata E-37]
          Length = 340

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 100/281 (35%), Gaps = 27/281 (9%)

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           LA++  V+++ L +  L  +      +M ++  +V       + V R +  I        
Sbjct: 69  LALVIAVALLILLVSALGPVLSGLAEQMPKIQREVREWLDEAVRVVRGVDSI------GR 122

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              + LS      +        + +   P FA++            +  +  LFFF   G
Sbjct: 123 EIEETLSEGGEEAVKQAMPSLVDALWMAPNFAAQS-----------LVFLGTLFFFVLTG 171

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I   L      L         ++  K +   F+ +T I    GL +  A  L G+P+ 
Sbjct: 172 EDIYNALPHRAGSL---------KLADKAVSHYFITVTAINACLGLAVFGAMALLGLPNA 222

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFL 300
           +  G    ++  +    PI      +   +      +  L +   + L + + + + P L
Sbjct: 223 MLWGGAAFLLNFVLYLGPIVMLISLLIAGVMNFSGASILLPMLAYLGLNMTEAQFVTPSL 282

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           VG  ++L  L  F  ++ G+   G +G  +   ++     +
Sbjct: 283 VGQQLRLNPLVVFLSILFGLWLWGPIGGVVSLPVLVWAMTL 323


>gi|28493386|ref|NP_787547.1| hypothetical protein TWT419 [Tropheryma whipplei str. Twist]
 gi|28476427|gb|AAO44516.1| unknown [Tropheryma whipplei str. Twist]
          Length = 398

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 58/178 (32%), Gaps = 1/178 (0%)

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            N +  I       G+  ++    I+ ++I   +F     +I      L       + K 
Sbjct: 190 QNNVTTITGSVVNIGIGIVNTVTGIVIVLILTIYFSATLPTIKATGYKLVPASRREFVKD 249

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
               V   +     G  ++A   G +    + +      + +  I  I +MIP  G   S
Sbjct: 250 TLEDVLSSVGRYTAGQFLLASINGTLTLLIFSILQFKYPILMAFIAFIGSMIPLVGTISS 309

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
              +S   L     +    + ++  + + +    + P ++   + +P        + G
Sbjct: 310 SALISGITLFSAQGWTVWAVVIYYLVYMNVEAYVISPKIMKKAVSVPGSLVVISALAG 367


>gi|254424434|ref|ZP_05038152.1| conserved domain protein, putative [Synechococcus sp. PCC 7335]
 gi|196191923|gb|EDX86887.1| conserved domain protein, putative [Synechococcus sp. PCC 7335]
          Length = 370

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/315 (12%), Positives = 97/315 (30%), Gaps = 10/315 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  + +      L+ ++       +A++I      I     +  + +      I  V   
Sbjct: 7   ISLLCLIAAGYILWQIRPLLLLSFAAVVIAIALNSITQKIKTTLKITRRAAIPITLVIAA 66

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + +V ++ +    + + + L   +V  +Q    +P  + D+   M       +      
Sbjct: 67  IVALVFVVGIVPPFIEQFRLLAVLLVRFSQT---LPARILDLQANMPERIRLPELSEFLA 123

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            L       +   G  F            L   L  +F+ +       +  +  Q +  +
Sbjct: 124 WLTAPDSAAIDVFGNFF------SIFNSSLQILLQTLFVSVLSLMILANPAAYLQVVLLV 177

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +    ++I      V+ +   G+ I ++    +      +  +    A  +I  I+
Sbjct: 178 FPAFYRPRAEEIFYKCELVLGNWLGGILISSLFVFSISFIGLLVLKIDLAFAHALIAGIL 237

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             IP  G  +S     +  LI  + +    +     I   I    L P ++   + +   
Sbjct: 238 NFIPNLGPTLSMVFPVVVALISNDPWKVVAVIALYIIIQQIESYWLTPTIMAHQVSMLPA 297

Query: 311 PTFFGLVGGVRTMGL 325
            T    +      G+
Sbjct: 298 FTLIAQIFFASVFGV 312


>gi|307719112|ref|YP_003874644.1| hypothetical protein STHERM_c14310 [Spirochaeta thermophila DSM
           6192]
 gi|306532837|gb|ADN02371.1| hypothetical protein STHERM_c14310 [Spirochaeta thermophila DSM
           6192]
          Length = 348

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 49/344 (14%), Positives = 116/344 (33%), Gaps = 27/344 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M   +      +  + +  I   L+  +    P++ A ++ F   P+           + 
Sbjct: 1   MERLVRLQVIFLALLSLVAIGGVLHITQQVVLPLVIAALLSFILAPLVVRM-----HRAR 55

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               +    VM L ++ +  L       +  L+ +        I +   L D        
Sbjct: 56  IPYFLGITVVMLLLVLIIAGLGTLLSSSLYSLIREYPRYQTRFIGLYNTLVD-------- 107

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                         +    F   + +  I  +        ++     + +++ L F   +
Sbjct: 108 -----------RFHLREWLFNDLSWVRTIGSYLVGLSGRLVELVTYTVLVLLFLLFLLLE 156

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              + +++         A   +I   + + I        +I++  GL++ +AY L G+  
Sbjct: 157 WRHLPRKMLRALRRGLTARIARILEHISEQISRYLAVKFLISLATGLLVWAAYSLIGLDF 216

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWG--AIELFIVDKTLR 297
               G++  +   IP  G+ + +   S++ +I+        L + G       ++   L 
Sbjct: 217 AFIWGLLAFLFNFIPNIGSAVVWGLSSLFAVIQFYPDWQHPLLVSGSMMFIQMVMGNLLE 276

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           P L G  + L  +   F L+      G+ G+FI   L  ++ ++
Sbjct: 277 PKLAGEQLNLSPVVVLFSLLFWGWLWGVAGMFIAVPLTVIVKIV 320


>gi|56750725|ref|YP_171426.1| hypothetical protein syc0716_c [Synechococcus elongatus PCC 6301]
 gi|56685684|dbj|BAD78906.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 347

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 88/262 (33%), Gaps = 12/262 (4%)

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             + ++  L + +  +   G    + L   P            L    S        L +
Sbjct: 93  ILINQVSALANTLPRSLNDGFQQFQLLEQHPFFSRIPLDLRAVLGTVVSRLSEQLQALTS 152

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             ++ +   AS      L   +S        F+    G  +   L +     + +  +  
Sbjct: 153 RLLELLLGVASGALQTMLTLVIS--------FYLLLRGDEVWDGLYNWLPVRWRSRARSA 204

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
             +     R+  L    IA   G        L G+   + LG    ++A+ P G  IS  
Sbjct: 205 LEL---SFRNYLLSQMTIAFLIGSSATIVLLLLGLRFWLLLGCGIGLLAIFPFGGSISIV 261

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
           +++I  +   N +    + ++      +++  + P L G  I +  +     ++ G +  
Sbjct: 262 SLAIVQMFS-NPWLGFRILVFCWGTDQLIENLIAPRLFGKSIGVHPVWVLMAILIGAQLG 320

Query: 324 GLLGLFIGPVLMALIAVIWKES 345
           GLLG+ +    +  + ++  + 
Sbjct: 321 GLLGVILAVPTVGCLRILLDDY 342


>gi|307297286|ref|ZP_07577092.1| protein of unknown function UPF0118 [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916546|gb|EFN46928.1| protein of unknown function UPF0118 [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 479

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 75/225 (33%), Gaps = 6/225 (2%)

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +  I  ++ L       + +  S      L    +I+  I   ++F     ++   +   
Sbjct: 260 NFLIQVQSSLMKFLPGILEKIPSFLTSTGLVLFFTIVGAIYLSYYFL----TVKDFIPRF 315

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                            K +    + + +IA+  G+V+G      G+   + +G   A  
Sbjct: 316 YPKKVRGIAISFLEDTYKNLERYVISVVVIALIVGVVVGIVVHSMGLKYSLLMGTWAAFT 375

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            +IP  G P+ F  + +  +   ++     L +   I        L    + G  ++  +
Sbjct: 376 NLIPIVGVPLEFIPLFLLAVSTQDLVLVITLMIILVIVHASA-FILFLVFMKGYNRINPV 434

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                +V   +  GL G  I      ++ + W      + E +E+
Sbjct: 435 IIILMIVIAGQLWGLFGAIIAVPFAIVLKMTWMHFFSPMLEEEEQ 479


>gi|196016506|ref|XP_002118105.1| hypothetical protein TRIADDRAFT_33619 [Trichoplax adhaerens]
 gi|190579318|gb|EDV19416.1| hypothetical protein TRIADDRAFT_33619 [Trichoplax adhaerens]
          Length = 847

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 68/195 (34%), Gaps = 5/195 (2%)

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            I       G   +++ + II  +  LF+      ++   +    + +      K  +  
Sbjct: 622 LIFSTLFGGGTAVINFLVDIIVFLTTLFYLLSSSENVYIPVKWAMDLIPSTTGDKFGQAA 681

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH-VALGVITAIMAMIPGGAPISFTAVS 266
            + IR  F     +A   GL     + L GV    +   +     A+   G         
Sbjct: 682 SEAIRGVFGASFKLAAFYGLYTWFTHSLFGVELVCIPSALSAIAAAIPFIGTYWVAVPAV 741

Query: 267 IYLLIKGN-IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           + L +  + +  A  L     +  +++D  +   + GG        T   + GG+  +GL
Sbjct: 742 LELWLVHDNVILAGLLLCCHCLPPYVIDIAIYREIKGGG---HPYVTGLAVAGGIYCVGL 798

Query: 326 LGLFIGPVLMALIAV 340
            G  +GPVL+    V
Sbjct: 799 EGAIVGPVLLCCFLV 813


>gi|160941557|ref|ZP_02088889.1| hypothetical protein CLOBOL_06455 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435522|gb|EDP13289.1| hypothetical protein CLOBOL_06455 [Clostridium bolteae ATCC
           BAA-613]
          Length = 373

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/319 (13%), Positives = 93/319 (29%), Gaps = 15/319 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           +     +L    AP     I+     P       +   +         + V+      L 
Sbjct: 35  VYAGFKYLLPLVAPFFVGYILALLLRPSARFLSYRMRVTVKGKRYHMPIGVIGGVEF-LA 93

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL---------SHP 130
            L   G +  +  +          + +P WL      +  +    +H             
Sbjct: 94  VLSVLGTVLYRGALKLCAEGKLLMVQLPVWLEQFDLWLTGNCHRVEHAMGLRPGCVADMA 153

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
             +        KT  + F+   +           +  + + +A     ++   +  + D 
Sbjct: 154 GDMLYHMVDTCKTAAMPFLMANSMSVISCLAKAAIVSLVVFLAAILSLQEMEDLRDRRDQ 213

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                    +  I   + +  ++ F    II      +     +L   P ++  G+   I
Sbjct: 214 SAFR---KEFNMIGSRLVQTGKAWFRSQGIILFITTGLCIGGMFLIRNPYYIMAGIGIGI 270

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P  G        +++ L  G+   A  L     +  F V + L   ++GG + L  
Sbjct: 271 LDALPIFGTGTVLIPWAVFRLAVGDWKQALVLTAIYLVCYF-VRQILEVRMMGGQVGLSP 329

Query: 310 LPTFFGLVGGVRTMGLLGL 328
           L T   +  G+   G  G 
Sbjct: 330 LETLASVYVGLELFGFFGF 348


>gi|81299634|ref|YP_399842.1| hypothetical protein Synpcc7942_0823 [Synechococcus elongatus PCC
           7942]
 gi|81168515|gb|ABB56855.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 348

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 88/262 (33%), Gaps = 12/262 (4%)

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             + ++  L + +  +   G    + L   P            L    S        L +
Sbjct: 94  ILINQVSALANTLPRSLNDGFQQFQLLEQHPFFSRIPLDLRAVLGTVVSRLSEQLQALTS 153

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             ++ +   AS      L   +S        F+    G  +   L +     + +  +  
Sbjct: 154 RLLELLLGVASGALQTMLTLVIS--------FYLLLRGDEVWDGLYNWLPVRWRSRARSA 205

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
             +     R+  L    IA   G        L G+   + LG    ++A+ P G  IS  
Sbjct: 206 LEL---SFRNYLLSQMTIAFLIGSSATIVLLLLGLRFWLLLGCGIGLLAIFPFGGSISIV 262

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
           +++I  +   N +    + ++      +++  + P L G  I +  +     ++ G +  
Sbjct: 263 SLAIVQMFS-NPWLGFRILVFCWGTDQLIENLIAPRLFGKSIGVHPVWVLMAILIGAQLG 321

Query: 324 GLLGLFIGPVLMALIAVIWKES 345
           GLLG+ +    +  + ++  + 
Sbjct: 322 GLLGVILAVPTVGCLRILLDDY 343


>gi|332030319|gb|EGI70062.1| Transmembrane protein C9orf5 [Acromyrmex echinatior]
          Length = 895

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 65/186 (34%), Gaps = 5/186 (2%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
           G   L++ LS +     LF+         + ++ L     P    + +  + + +   F 
Sbjct: 679 GSAVLNFVLSTVVFFTTLFYLLSSSDKTYKPIE-LTTMFSPISCHRFAMSLQEAVIGVFA 737

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG-APISFTAVSIYLLIKGNI 275
               +A   G+     + L  V        +  ++  +P   A  +    +I L      
Sbjct: 738 ATFKLASFFGMWTWFIHNLFQVKIVYLPSALATMLGAVPFLDAYFACIPATIELWFTRGS 797

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             A   FL+  +   IV       + GG        T   + GG+  +G+ G   GP+L+
Sbjct: 798 MIAISFFLFHFLPCNIVVTEFYKEIKGGG---HPYLTGLSIAGGIFCLGVEGAIFGPLLL 854

Query: 336 ALIAVI 341
             I V+
Sbjct: 855 CCIMVV 860


>gi|226357602|ref|YP_002787342.1| hypothetical protein Deide_1p01450 [Deinococcus deserti VCD115]
 gi|226319593|gb|ACO47588.1| Conserved hypothetical protein; putative membrane protein
           [Deinococcus deserti VCD115]
          Length = 430

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 47/335 (14%), Positives = 108/335 (32%), Gaps = 13/335 (3%)

Query: 16  IMFIILVSLYF--LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           ++ ++L   +F  +      ++ ALI+     P+          ++  LA +  V     
Sbjct: 26  VIAVLLALSFFGRVGPALLAIILALILATALNPVARFLERWMPRAAAGLATVLLVL---- 81

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
                       +     +     ++      VP     I   +      +  LS     
Sbjct: 82  ----AALALLGFLAVPPVVTQVGQISGSLPSSVPELEKRINAAIAGYPSISGALSEDTIH 137

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            ++ +    T       R         L      +  ++ + F   +   +         
Sbjct: 138 GLVQQA---TTFTTKAARALPNLVGTALGGLFLALVTLVMVVFVLSNPVPLVNGALGAVP 194

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   +    + K + +      +I +  G  +     L GV + +  G++ A+  +
Sbjct: 195 PRHRLKAARALAQILKQLGAWGRATVLIMLVTGGFMALGLMLLGVENWLVFGLLAALGEL 254

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   PI  +   I   +  +   A  + ++  +   +    L PFL+GG  KL  L   
Sbjct: 255 IPNLGPIVASLPPILFTLADDPQKAVYVAVFSLVFQQVEGFILAPFLLGGAGKLHPLSVT 314

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            G++      GL+G F+    + ++  +++E  + 
Sbjct: 315 VGVLLFGSVFGLVGAFLTVPFLIILKAMYQEFYLQ 349


>gi|213854554|ref|ZP_03382794.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 253

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 81/226 (35%), Gaps = 7/226 (3%)

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           +P++ S +   +   E W +      S+  L++       +  +    ++          
Sbjct: 3   LPQYRSSLVIPLQRIEPWLQRAGIGVSVDELAKYIDPNAAMTLVTNLLTQLSNAMS---- 58

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           SI  +++ + F   +   + ++L  +     P       +     +    +  T I+I  
Sbjct: 59  SIFLLLLTVVFMLLEVPQLPEKLQQMMSR--PVEGMAAIQRALDSVSHYLVLKTAISIVT 116

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLW 284
           GLV         V      G++   +  IP  G+ ++     I +L+    ++A  +   
Sbjct: 117 GLVAWGMLAALDVRFAFVWGLLAFALNYIPNIGSVLAALPPIIQVLVFNGFYDALLVLAG 176

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             +   +    L P ++G  + L  L  F  L+     +G +G+ +
Sbjct: 177 YLLINLVFGNILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLL 222


>gi|209363980|ref|YP_001424515.2| hypothetical membrane spanning protein [Coxiella burnetii Dugway
           5J108-111]
 gi|207081913|gb|ABS76665.2| hypothetical membrane spanning protein [Coxiella burnetii Dugway
           5J108-111]
          Length = 376

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 53/333 (15%), Positives = 108/333 (32%), Gaps = 29/333 (8%)

Query: 14  WMIMFIILVSLYFLKGF-FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
            +I++++ +  +       A VL  +II  T+  +Y     KK  S  F   +A V+   
Sbjct: 48  VLIVYLLFIGRFLFLPLTIALVLWYVIISLTA--LYQRIPFKKRLSHGFALFLAIVTTAI 105

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
                L   F      + +L+       Q    + RW + + GG              ++
Sbjct: 106 F----LYLFFLMFTQSLPDLIEAGPAYQQKLYQLLRWFNVLVGGGRLYLGQLMRQIDLKN 161

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           +       L                        +   +I+ LFF   +  S +Q+L  L 
Sbjct: 162 IFSELPIILSLTAA-------------------NFTLVIVYLFFLLLEHRSFNQKLKLLC 202

Query: 193 EHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                     +I + + K + + F   T+I++   L+         + +         ++
Sbjct: 203 HSSKKYKKVIEIIKEITKDVNNYFKVKTLISLITALLSYFVLLGFKINNAEFWSTFVFLL 262

Query: 252 AMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
             IP   P+      + +       +     L +       I+   + P  +G  + L  
Sbjct: 263 NYIPYIGPLIAVVTLLIVASIQVTQLVPFIFLGILLTAIQIILGNFVEPKWLGVRLNLSP 322

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L     L       G +GLF+   +M ++ +I 
Sbjct: 323 LVILLSLAFWGSIWGFIGLFLSVPIMVILTIIL 355


>gi|268573019|ref|XP_002641487.1| Hypothetical protein CBG09778 [Caenorhabditis briggsae]
          Length = 816

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 71/215 (33%), Gaps = 15/215 (6%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS---------QQLDSLGEHLFPAY 199
                  FGM  L+  + +I  +  +++      +             + +  E +    
Sbjct: 589 FAGIILSFGMELLNTFIELIVFLTMVYYLLSASRTRWLPLQWASDLSAVTANDETMSAPA 648

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
              I+  +   I   F+    +A+  GL     + L  +       +   + A IP   P
Sbjct: 649 QHHITAAIEHAIFGVFILSAKMAVFYGLYTYFVHSLFDLNIVFVPSMAATLFAAIPIMPP 708

Query: 260 ISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
                  I  L   +G    A    L     +   D T    + G         T   ++
Sbjct: 709 YIVAIFGIVELWLVRGEGAAALVFTLASFAPVMFADATFYKEVKGS----HPYVTGLAII 764

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           GG+  +GL G  IGP+++ L  V+    +  +K +
Sbjct: 765 GGMYWLGLQGAIIGPIILCLCLVLVNVYLQHVKPS 799


>gi|20091458|ref|NP_617533.1| hypothetical protein MA2635 [Methanosarcina acetivorans C2A]
 gi|19916603|gb|AAM06013.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 357

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 72/199 (36%), Gaps = 3/199 (1%)

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
           F  R +       L+   +++ + I   F   D      ++    E   P Y  + + + 
Sbjct: 133 FAFRVSGNIVTGALNAGSTVVLIFIVTTFLLLDSAGAPVKVQKEVED-QPVYLSRFTELS 191

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVS 266
             VI    L      +  G+ +   + + G+   V  G++  +   IP  G  ++     
Sbjct: 192 KTVINFMLLRTE-TNLIGGIGVAILFLIGGIDFAVLWGLLFFLFGYIPYLGFYLATIPPM 250

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           +  L K     A  + +   I   +++  L P + G  +KL     F  L+     +G  
Sbjct: 251 LLGLFKYGPVGALGVLVGVTIINALIENVLFPSIAGRGLKLSTTIVFLSLIYWSYVLGAA 310

Query: 327 GLFIGPVLMALIAVIWKES 345
           G  I   L  ++ ++ + S
Sbjct: 311 GALIAVPLTIVVKIVLESS 329


>gi|284990636|ref|YP_003409190.1| hypothetical protein Gobs_2135 [Geodermatophilus obscurus DSM
           43160]
 gi|284063881|gb|ADB74819.1| protein of unknown function UPF0118 [Geodermatophilus obscurus DSM
           43160]
          Length = 443

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 99/298 (33%), Gaps = 21/298 (7%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             PVL AL++     P+             + +    + ++   ++  + L    + +  
Sbjct: 96  VGPVLLALVVVIALTPVQRFLQRHGWPR--WASATVLLLLVWTVLLGFVALLVVSIAQFA 153

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L+     A +    +   ++D+      S   +  L+          + L       + 
Sbjct: 154 ALLPN--YAGEAEALIASVVADLNDRGIVSGQLSDLLAQFDY------SQLVGVATGVLS 205

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
           R       + L     +   I +  F    G  ++  L +      P        +  + 
Sbjct: 206 RATDAASTLVLLLAALVFLSIESGGF----GRRLA--LIAADRPHLPI----ALGLFARG 255

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
            RS     T+      +  G A  + G+P  V  G+++ +   +P  G  +     +I  
Sbjct: 256 TRSYLWVSTVFGGIVAVGDGIALAIIGIPLPVVWGLLSFVTNYVPNIGFVLGLVPPAILA 315

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           L+ G   +   +    A+  F+V   ++P  VG  + L    TF  L+     +G LG
Sbjct: 316 LLDGGWTDFWVVIAVYALLNFVVQTLIQPRFVGDSVGLSMTVTFVALLFWGWVLGALG 373


>gi|160894664|ref|ZP_02075439.1| hypothetical protein CLOL250_02215 [Clostridium sp. L2-50]
 gi|156863598|gb|EDO57029.1| hypothetical protein CLOL250_02215 [Clostridium sp. L2-50]
          Length = 495

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 82/234 (35%), Gaps = 7/234 (2%)

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIF---LDYCLSIIFMIIALFFFYRDGFSISQQ 187
            ++    + ++ T+ +  + +            L +  + +  I+A  +   +   ++ +
Sbjct: 171 NTVYDRLQKWVNTDVVPNLDKIVLNISSGVVGGLKFIYNFLIGIVASIYVMANKEYLASR 230

Query: 188 LDSLGEHLFPAYWKKI----SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
              +   LF      I       V K+      G  + +I  G++      +  +P  + 
Sbjct: 231 GKKIVYALFKLKNANIILDGLASVNKIFSQFINGKIVDSIIIGIITFILTTIVDMPYALL 290

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           + VI  +  +IP   PI      +++++  +   +  L +            L P ++G 
Sbjct: 291 ISVIIGVTNVIPFFGPIIGAIPCVFIVLIADPIKSIILLIMILCIQQFDGNILGPKILGD 350

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
              L        ++ G    G  G+ +G  + A I +   ++     E K  +S
Sbjct: 351 VTGLSSFWVLTAVIVGGGIFGFYGMLLGVPVFACIYMYINKTCTDKLEKKHMVS 404


>gi|95930357|ref|ZP_01313094.1| protein of unknown function UPF0118 [Desulfuromonas acetoxidans DSM
           684]
 gi|95133609|gb|EAT15271.1| protein of unknown function UPF0118 [Desulfuromonas acetoxidans DSM
           684]
          Length = 337

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/315 (13%), Positives = 106/315 (33%), Gaps = 22/315 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + II+  L   +    P L A  I     P       +          + T   +C+ I 
Sbjct: 18  LIIIIAGLKSAQDLIVPFLLAAFIAILCLPSLHWLERRH---------LPTSLNICIVIS 68

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             L       + +   +            +P + + +         W        S +I+
Sbjct: 69  AALLTGLLLAVFVGSSLHDFSRT------LPTYQARLHDQTRTLFDWLNQHGIDISSQIV 122

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            + F  +  +       S  G +  D  L ++ +I  LF    +  ++ ++L    ++  
Sbjct: 123 LDYFDPSAAMKIAANTLSGVGAVLTDGFLILLTVIFILF----EASAMPKKLKQALKN-- 176

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
           P         + + ++   +  T +++  G  +     +  V   +  G++  ++  +P 
Sbjct: 177 PEQSFAQFTRITQSVQGYLVIKTAVSLLTGAAVIIWLIILDVDYPILWGLLAFLLNFVPN 236

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ I+     +  +++  +  A  +     I   +V   + P  +G  + L  L     
Sbjct: 237 IGSIIASIPAILLAIVQHGMGTALLVAGGYVIVNVVVGNIIEPRFMGKQLGLSPLVVLLS 296

Query: 316 LVGGVRTMGLLGLFI 330
           L+     +G +G+ +
Sbjct: 297 LIIWGWVLGPVGMLL 311


>gi|148243365|ref|YP_001228522.1| permease [Synechococcus sp. RCC307]
 gi|147851675|emb|CAK29169.1| Predicted permease [Synechococcus sp. RCC307]
          Length = 356

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 52/304 (17%), Positives = 111/304 (36%), Gaps = 17/304 (5%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           F++  +L  L  F A  +SA +I F    I   ++  +        V+     + + ++ 
Sbjct: 21  FVLRQALLRLAPFPALFISAALIAFLLD-IPRRWLQHRGVPRPLTMVLVLGVTVGVVVLS 79

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
            L+L    + ++ EL++            P WL      +   +        P  L  L+
Sbjct: 80  GLWLVPRLIEQLGELIN----------AAPGWLEQAQNQLNVLQEKALERGIPTDLSPLT 129

Query: 138 ETFL--KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +  L   T     + +         L   ++ I +++   F    G +IS  L       
Sbjct: 130 DDLLARSTRLARSLSQQLLGLLSATLGLTVNSIIVLVLAVFLLLGGETISAGLARWVP-- 187

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
              + + +   + +  R  F G  ++A+    +    + L  +P  +   ++     +IP
Sbjct: 188 -DDWRELVVGSLNRTFRGYFAGQVLLALILSGLQVVVFTLLQIPYGILFALLIGFTTLIP 246

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
             + ++ T +SI L ++ ++     +         +VD+ + P LVG  + L      F 
Sbjct: 247 YASALTITLISIVLTVE-DLRTGLEVLAAAISVGQVVDQVIAPRLVGTIVGLHPAWVLFS 305

Query: 316 LVGG 319
           L  G
Sbjct: 306 LPVG 309


>gi|126736114|ref|ZP_01751857.1| hypothetical protein RCCS2_10265 [Roseobacter sp. CCS2]
 gi|126714280|gb|EBA11148.1| hypothetical protein RCCS2_10265 [Roseobacter sp. CCS2]
          Length = 343

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 53/329 (16%), Positives = 116/329 (35%), Gaps = 15/329 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +   + L +L+  +   AP+L+A+++G    P+     S   +     A +A    + L
Sbjct: 12  ALTFVVALAALHITRNLMAPILAAILLGIVMTPL-----SDLWDRLRVPAAVAAALSVLL 66

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +  +L L       + + +S+  +  +        +  I        L         ++
Sbjct: 67  ALSAILILLLLIEPYITQAISQGPVIREELRATVDEMRRI-----LRGLEQISEDMAAAI 121

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           +                   +        +    +     L+FF     ++   L S   
Sbjct: 122 EPNDAVVENATDEAVALPSLTDALFYAPQFLAQFLIFTGTLYFFLLARDAVYDWLSSNIS 181

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           +L   + K+ ++ V +      L ++ I +  G ++     + GVPS +  G++  ++  
Sbjct: 182 YLTDMHLKRAAKQVSRY----VLTISTINLALGALVAVVMQIIGVPSPMIWGLLAFLLNF 237

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIKLPFLPT 312
           I    P    A+   + I      A+ L     I +  ++ + + P LVG  + +  L  
Sbjct: 238 IMYLGPALLIAMLTVMGIVVFDGAASFLPAAVYIAMNAIEAQFVTPTLVGKSLSVNPLLV 297

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           F  LV  +   G +G  I   L+  I  +
Sbjct: 298 FLSLVFWLWLWGPIGGIIAIPLLIWILTV 326


>gi|78779257|ref|YP_397369.1| hypothetical protein PMT9312_0873 [Prochlorococcus marinus str. MIT
           9312]
 gi|78712756|gb|ABB49933.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9312]
          Length = 347

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/341 (12%), Positives = 110/341 (32%), Gaps = 3/341 (0%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
            +  ++ I  + ++ L+ F   ++ +L+I      + +      +             + 
Sbjct: 7   FKLAVIIITSIIIWLLRDFLLLIICSLVISNIVCNLCNQIQKGLKIPRPLSLFFVLTVIS 66

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW---ASELWTKHLS 128
            +     + +    + E  E++  +         +     +    ++    SE   +  +
Sbjct: 67  VIVFTIFILVLPPFVKEFNEILVDIPNGLSKINILLNTNLNKLNSLFYGEESENVIEIFN 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              ++  + +       I    +             L +IF+++       +     + +
Sbjct: 127 LINNVVAIPDAATIAKAIQESFKNLINLAGNLGSGLLKLIFVLVVSLMISIEPKQYKENI 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L    +   ++ I       + +    M + ++  GL+      +  V   V+  +I 
Sbjct: 187 LLLIPKNYRNKFRNILDKCNIALANWTFSMVVSSLSVGLLSLIVLSILDVKYVVSNALIA 246

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++ +IP   P+      I + +  N +    +     I   I    + P ++     L 
Sbjct: 247 MVLNIIPNIGPVISGIFPISIALLDNFWKPLAVLGAYVIIQNIESYIIMPSIMKKKANLL 306

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
              T     G     G LGL +   L  +I V+ KESI  I
Sbjct: 307 PGLTLISQFGFTFIFGPLGLILSLPLAVVIQVLIKESINDI 347


>gi|213616436|ref|ZP_03372262.1| hypothetical protein SentesTyp_19021 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 298

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 77/210 (36%), Gaps = 3/210 (1%)

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L  + L    +L +  E  L+    D I  F +           SI+ +++ + F   + 
Sbjct: 55  LHLQELMPFLNLHMSPERMLRGMDSDKIMLFTTTLMTGVSGAMASIVLLVMTVVFMLFEV 114

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +  +L     +    +   + R +  V     L   + ++  G ++     L  +   
Sbjct: 115 RHVPYKL-RFALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGAIIWLGLALMDIQFA 172

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +  GV+  ++  +P  G+ IS     I  L+    +    +     +   ++   + P +
Sbjct: 173 LMWGVLAFLLNYVPNIGSVISAVPPMIQALLFNGFYECVLVGALFLVVHMVIGNIMEPRM 232

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +G  + +  L  F  L+     +G +G+ +
Sbjct: 233 MGHRLGMSTLVVFLSLLVWGWLLGPVGMLL 262


>gi|262044101|ref|ZP_06017178.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038570|gb|EEW39764.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 298

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 95/303 (31%), Gaps = 22/303 (7%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL +     P+    +  +        
Sbjct: 7   TLNGLKMVIMLGMLVIILTGIRFAADIIVPFILALFLAVIINPLVQLLVRCRVPR-VLAI 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +    ++ L IV L  L        + L        +    +  WL  +          
Sbjct: 66  SLLIGLIVMLAIVLLASLGTSLNELARTLPQYRNYLYEPMQTIAPWLQRM---------- 115

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                      +      K    + +    +       +   SI  +++ + F   +   
Sbjct: 116 --------GFTVSVVELNKYIDPNAVMTLVTSLLTQLSNAMSSIFLLLLTVVFMLLEVPQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +L  L     P       +     +    +  T I++  GLV+     L  V     
Sbjct: 168 LPAKLQQLMSR--PVEGMGAIQRAIDSVSHYLVLKTAISLITGLVVWGMLVLLDVRFAFM 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++     + +L+ G ++ A  +     I   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPILQVLVFGGLYEALVVLAGYLIVNLVFGNILEPRIMG 285

Query: 303 GPI 305
             +
Sbjct: 286 SGL 288


>gi|254671723|emb|CBA09523.1| permease [Neisseria meningitidis alpha153]
          Length = 207

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 69/172 (40%), Gaps = 2/172 (1%)

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D    S  +  L    F   + +I+  + +V+     G  ++ +  GLV G    L G+ 
Sbjct: 27  DWQRWSCGIAKLVPRRFAGAYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLVLVGLD 86

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIVDKTLR 297
           S  A+G++  I+  +P     +   ++    +         L +W    +  F+    + 
Sbjct: 87  SGFAIGMVAGILVFVPYLGAFTGLLLATVAALLQFGSWNGILSVWAVFAVGQFLESFFIT 146

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           P +VG  I L      F L+   + MG +G+  G  L A+  V+ +E +   
Sbjct: 147 PKIVGDRIGLSPFWVIFSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVQKY 198


>gi|313634041|gb|EFS00724.1| membrane protein YdbI [Listeria seeligeri FSL N1-067]
          Length = 319

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 47/305 (15%), Positives = 101/305 (33%), Gaps = 25/305 (8%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  +I V LY L+     +L   I  F    + +  + +       +
Sbjct: 36  EKLKENNTARRVLVFILIGVVLYLLRSMIDLILLTFIFAFLVTRLENVILKRVRIPRKLI 95

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V     V ++      + ++ +LV  +V    +  P    ++    G      
Sbjct: 96  VIVLYTLVALFLYVAIVHFLPILIDQISQLVDSLVKIYNN--PPDNAIAKWFVGFLKESN 153

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             K+L                 G+DFI    S  G + L + L++I  +    FF  +  
Sbjct: 154 IEKYLQ---------------TGVDFIIVSLSGIGSVGLSFFLALILSL----FFSLEKE 194

Query: 183 SISQQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            ++              +K+     +              +IA+   ++   A +L   P
Sbjct: 195 RVTSFTGQFLTSKVGFIFKEAAFFGKKFVGTFGVVLEAQLMIALVNTIITTIALYLMDFP 254

Query: 240 SHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             ++L ++  ++ +IP    I     + +     G + +   + L   I   I    L P
Sbjct: 255 QLLSLSIMVFVLGLIPVAGVIISCVPLVLIAYSVGGLQDVFYILLTVVIVHAIETYILNP 314

Query: 299 FLVGG 303
            L+  
Sbjct: 315 KLMSS 319


>gi|259418235|ref|ZP_05742153.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
 gi|259345630|gb|EEW57474.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
          Length = 379

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 53/345 (15%), Positives = 114/345 (33%), Gaps = 26/345 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFF-APVLSALIIGFTSWPIYSSFISKKEES--- 58
           E+    + +   +I F +++ L     F    +  A+I+   +  +      ++      
Sbjct: 16  ESHARLRTVALIIIAFAVVLFLLVQARFLLISLAVAIILFSLTSDVIRLIARQRIGRLGV 75

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
             +LA +               L       +      +   N        +    P  + 
Sbjct: 76  PNWLASV-------------AALLLISTALLLLSSILLAQLNTVLSTTLSYAERAPSAVA 122

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
           +   W         L  L+   L +    ++   A + G +     L I+F+        
Sbjct: 123 SLFAWMGEDVERAVLNSLNSVELSS----YVRTVAGQAGNLMQGTVLVILFVGFLFAERI 178

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                +S      G+        KI   +   +    L  T +++  G+++ +     G+
Sbjct: 179 WFSTKMSNF---FGDEAQAERANKIITSIIHRVNYYLLVKTAVSVITGVMVYAVASFFGI 235

Query: 239 PSHVALGVITAIMAMIPGGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
              ++LG++T I+  IP    I  T     +  +  G   +   LFL   +  F+    +
Sbjct: 236 ELALSLGILTFILNYIPNIGSIVATGMVALVGFVETGEPTSTALLFLITGLIQFVNGNVI 295

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            P L+G  ++L        L       G+ G+F+   +M ++ VI
Sbjct: 296 DPLLMGRALRLSSFGIILSLAFWGAVWGVPGMFLSVPIMVMMLVI 340


>gi|254470491|ref|ZP_05083895.1| transporter, permease [Pseudovibrio sp. JE062]
 gi|211960802|gb|EEA95998.1| transporter, permease [Pseudovibrio sp. JE062]
          Length = 360

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/343 (13%), Positives = 114/343 (33%), Gaps = 21/343 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           MR+ ++  +      ++ +I   L+  +    P++ AL++ +    + S+        + 
Sbjct: 1   MRQPLI--KFTASLFLLVVIGWLLFIGRSLIIPLIIALVLWYIINSMSSALRHLPVVGTY 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               +  +  +      +  LF    + +++L             +   L++        
Sbjct: 59  LPRPLTILLALFAIFYVVGILFNIVSVNLQQLAFDAPTYQGRLDELLLKLAN-------- 110

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                ++  P  L  +   F  +  +       +          + ++FMI     F + 
Sbjct: 111 ---QLNMEKPLQLSDILPNFSLSAALSTGASVLTSLAGSSSLVFIYVLFMIFEAATFDKK 167

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
             ++ +  D +           I   + + +R      T ++I  G +  +    AG+P 
Sbjct: 168 LAALFEDSDRV------QLAFAIRGEIGRRMRHYMGIKTGVSIITGFLTYAITSWAGLPY 221

Query: 241 HVALGVITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
               G I  ++  IP    +        + L+    +     + L      FI+   + P
Sbjct: 222 AALFGFIAFLLNYIPTIGSLIAVIFPSLLSLVYFDTLTPFIAITLGLGAVQFILGNLVEP 281

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L+G  + +  L     L       G++G+ +   L+ L  +I
Sbjct: 282 RLMGTQLNISPLVIMISLSFWGALWGVIGMVLCVPLVVLAIII 324


>gi|315286255|gb|EFU45691.1| putative AI-2 transport protein TqsA [Escherichia coli MS 110-3]
          Length = 315

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/315 (13%), Positives = 98/315 (31%), Gaps = 22/315 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ VM + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQAIEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 126 HYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKFQQMMAR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+    + A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLV 317
             + L  L  F  L+
Sbjct: 286 RGLGLSTLVVFLSLI 300


>gi|294056536|ref|YP_003550194.1| protein of unknown function UPF0118 [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615869|gb|ADE56024.1| protein of unknown function UPF0118 [Coraliomargarita akajimensis
           DSM 45221]
          Length = 391

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 57/342 (16%), Positives = 120/342 (35%), Gaps = 11/342 (3%)

Query: 11  IMRWMIMFIILVSL-YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           I  +   F++L       +    P+  A I+     P  +   ++   S     ++  V 
Sbjct: 30  IATFFFTFVLLRGFVAAFQDVLLPLAIAAIVATLLRPFVTFLETRTRLSKLHGIILLYVL 89

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ +  V L+ +    + +   L+  +     +     +            +L     + 
Sbjct: 90  VILVCGVALVAVVPATIEQTTRLIKHLPELTTNLSEQLQTRIPEAWAWLEEKLGEPPEAF 149

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            Q +   +   +K      +       G +F       I  +  LFF      +I   L+
Sbjct: 150 LQRIIAENSEIIKGGITSSVGSATGLVGDLFGKIAAYSIIPVY-LFFILNGDRNIWTDLE 208

Query: 190 SLGEHLFPAYWKKI---SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
              + L     + +   +R    ++ + F G  II +  G+VLG  + L G+   + LG+
Sbjct: 209 RQIDFLPKDRREDLVFLARQFSDILIAFFRGQIIIGLLLGVVLGLGFALVGLKFGLFLGL 268

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE----LFIVDKTLRPFLVG 302
           I  ++ +IP    +    +++  L        T L +  +I       + D    P ++G
Sbjct: 269 ILGLLNIIPYLGTM-LGILTVLPLAHLQPGGGTNLIILCSIVFIIGQLLTDYVFTPRIMG 327

Query: 303 GPIKLPFLPTFFGLVG-GVRTMGLLGLFIGPVLMALIAVIWK 343
               +  +   F +   G    G+LG+ +   L A   V W+
Sbjct: 328 DKTGMGPMLIIFSIFFWGTALGGILGMVLAIPLTAFFLVFWR 369


>gi|149915828|ref|ZP_01904352.1| hypothetical protein RAZWK3B_07109 [Roseobacter sp. AzwK-3b]
 gi|149810151|gb|EDM69997.1| hypothetical protein RAZWK3B_07109 [Roseobacter sp. AzwK-3b]
          Length = 381

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 49/342 (14%), Positives = 120/342 (35%), Gaps = 20/342 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFF-APVLSALIIGFTSWPIYSSFISKKEESSTF 61
           E     +     +I F +++ +     F    +  A+I+   +  +      ++      
Sbjct: 19  ENHARVRTTALVIIAFAVVLFMLVQARFLLISLAVAIILFALTSDVIRFIARQRIGRFGV 78

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +A+++ + L    LL L    + ++  ++   V   +        L    G    + 
Sbjct: 79  PNWLASIAALVLISTALLVLSSILLAQLNTVLVTTVSYAERAPSAVASLFGWMGEDVETA 138

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           ++                        ++   A + G +      +++ ++   F F    
Sbjct: 139 VFNS--------------LRSVEISGYVRTVAGQAGNLMQG---TVLVILFVGFLFAERI 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
           +  ++  +   +    A   KI   +   +    L  T++++  G ++     + G+   
Sbjct: 182 WFDTKMTNFFEDEGQAARATKIITSIIHRVNYYLLVKTVVSLITGAMIYVVAQVFGIELA 241

Query: 242 VALGVITAIMAMIPGGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           +ALG++T I+  IP    I  T     +  +  G+      LFL      FI    + P+
Sbjct: 242 LALGILTFILNYIPNIGSIVATGMVALVGYVETGDAQTTGALFLITGAIQFINGNVIDPW 301

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++G  ++L        L       G+ G+F+   +M ++ V+
Sbjct: 302 MMGRALRLSSFGIIMSLAFWGAVWGIPGMFLSVPIMVMLLVV 343


>gi|300785800|ref|YP_003766091.1| hypothetical protein AMED_3910 [Amycolatopsis mediterranei U32]
 gi|299795314|gb|ADJ45689.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
          Length = 405

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 94/302 (31%), Gaps = 21/302 (6%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F  PV  AL++  T  P+ +    K      +L V   V  +   +V    +F   + ++
Sbjct: 90  FAGPVFLALVVVLTLDPVRTWLRRKGWPR--WLTVGVLVVTVYAILVGFFLVFVVSVAQL 147

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             LV +        +                 +  +       L+ +  +      +   
Sbjct: 148 SALVPRYTGQVDELV------------RDGLNVLGRFGVSEPELRAMVSSLDTGKLVGLA 195

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
               +  G +  +       ++         G  + +            +     R    
Sbjct: 196 GSLLASVGGLVTNLAFLFALLLFLSAETAWAGQRLGRIARD------RPWISAALRSFAS 249

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIY 268
             R   +  T+       +  +A  L GVP  +  G++  +   IP  G  I     ++ 
Sbjct: 250 GTRRYLVVTTVFGALVAALDTTALALLGVPGALLWGLLAFVTNYIPNVGFVIGVAPPAVI 309

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
            L+ G   +   + +  A   F+V   ++P  V G + L  L T   LV     +G LG 
Sbjct: 310 ALLDGGWGSLLVVLVVYAGLNFVVQSLVQPRFVAGSVGLSTLVTVLALVFWTWLLGPLGA 369

Query: 329 FI 330
            +
Sbjct: 370 IL 371


>gi|15805923|ref|NP_294622.1| hypothetical protein DR_0898 [Deinococcus radiodurans R1]
 gi|6458616|gb|AAF10473.1|AE001942_5 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 394

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/283 (11%), Positives = 87/283 (30%), Gaps = 10/283 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
            A +  A  + +T  P+       +      +A+   V +  +       LF+    ++ 
Sbjct: 44  LALIAIAYALSYTFNPLLLWLEKHRITRPFGVALTLIVVLGVI-----GVLFWSVASQVV 98

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
             +  +         +   L     G   + +        Q ++   +   +  G     
Sbjct: 99  SFLQGLPALLNSLPQLLEHLIGKGPGHNNAGISQTQAQLTQYVREQVDNLTRNFGPLLAR 158

Query: 151 RFASRFG-----MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
             +            +++      ++    FF  D     + L  +    +      +S 
Sbjct: 159 VLSPDSALYGQVSGVMNWLGQAGLVLTLAVFFMLDHSKFGRTLLRVFPKEWQPRLLLLSE 218

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            V K   +      I+ +    + G    L GVP+ +ALG++T ++ ++P    +     
Sbjct: 219 DVSKSFGNYIRAQLILLLVISGISGVGLLLLGVPNALALGLLTGLLNLVPLVGMVLAAIP 278

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++   +         +     +   +    + P ++G  + L 
Sbjct: 279 ALLQALPLGTTKVLIVAGLYFVLNQVAWNVIAPMVMGRTVNLS 321


>gi|325002986|ref|ZP_08124098.1| hypothetical protein PseP1_29665 [Pseudonocardia sp. P1]
          Length = 426

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 44/315 (13%), Positives = 95/315 (30%), Gaps = 21/315 (6%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P   ALII     P+             +   +  V ++   ++ L     Y +  + 
Sbjct: 61  IGPAFMALIIVIAVAPVQGFLRRHNW--PGWATTLVVVLLVYAILLGLALGIVYSVARLA 118

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
                          +P++              T  L+         +    +  +  + 
Sbjct: 119 T-------------ELPQYAGS---ATALVNRATAGLATMGIGPEQLQQAAGSLDLGKLA 162

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                          + +F++  L F   +      +L ++     PA    ++R     
Sbjct: 163 GLLGALLSSVAGLATNFVFLLALLLFLGVESSGAGDRLAAIAAD-RPATSAALARFAWGT 221

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
            R   +  T+  +   ++   A  + G+P     G++  +   IP  G  I     ++  
Sbjct: 222 -RQYLIVTTVFGLIVAVLDWVALLMLGIPLAATWGLLAFVTNYIPNVGFVIGVIPPALLG 280

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           L+         + +      F+V   ++P  +G  + L    TF  LV     +G LG  
Sbjct: 281 LLTSGPELMIIVIVVFCAINFVVQSIIQPRFIGDAVGLSVTVTFVALVFWAWLLGPLGAI 340

Query: 330 IGPVLMALIAVIWKE 344
           +   L  L   +  +
Sbjct: 341 LAVPLTLLAKAMLVD 355


>gi|205374233|ref|ZP_03227032.1| permease [Bacillus coahuilensis m4-4]
          Length = 139

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 56/137 (40%)

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA 278
            ++ +  G     A+WL G+   + LG + A+  +IP   P+     ++ +    ++   
Sbjct: 1   MLVCLILGGCAFVAFWLIGLKYPLLLGAVVAVTNIIPYFGPLVGAVPAVIIASTISVNMI 60

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             +     +  F+    L P +VG  + L  L     LV G    G++GL     ++A++
Sbjct: 61  LFVGGIILLLQFLEGNILSPLIVGRSLHLHPLFIMGALVIGGELGGVIGLIFAVPVLAIV 120

Query: 339 AVIWKESIMAIKENKEK 355
                +     K+  E+
Sbjct: 121 KTAILQGRHHFKQKSEE 137


>gi|296131289|ref|YP_003638539.1| protein of unknown function UPF0118 [Cellulomonas flavigena DSM
           20109]
 gi|296023104|gb|ADG76340.1| protein of unknown function UPF0118 [Cellulomonas flavigena DSM
           20109]
          Length = 448

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/349 (10%), Positives = 102/349 (29%), Gaps = 25/349 (7%)

Query: 9   QGIMRWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +G+   ++   + +  +     L+G    +L A  +     PI    +    +     A 
Sbjct: 51  KGLAMAVVAVFVGIFAWDALGALQGLLVNLLIAFFLALALEPIVVWLVRHGWKRGGAAAA 110

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
                ++   +V         + ++ +LV  V                      A E+  
Sbjct: 111 ALLGGLVVTLVV-FALFGNLFVQQLVQLVKNVPTLYTS----------------AQEMVE 153

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +  +                    +   A   G   +    + + +++  ++    G   
Sbjct: 154 ERFAVQVPEVDDLLRQGAEEWGSEVASGALLVGTTIIGGLFATLTIMLVTYYLLAAGPKF 213

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              +             ++  +    +        ++A    +       + G P  + L
Sbjct: 214 RASICRWLTPNRQQEVLRLWEVTQAKVSDFITTRIVLAAVATVATFVFLAVLGTPYSLPL 273

Query: 245 GVITAIMA-MIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            + T +++  +P           V++ L  +G +  A  +  +      + +  L P + 
Sbjct: 274 ALFTGVVSQFVPTIGTYIGGALPVAVALTSQG-VPQALGVLAFILGYQQVENLWLAPKVS 332

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
              +++    +F  ++      G LG F+   + A I  +    +   +
Sbjct: 333 ARALEMNAAVSFVVVLAFGAVFGALGAFLALPIAATIQAVANTYVQRHE 381


>gi|21244703|ref|NP_644285.1| transport protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|21110393|gb|AAM38821.1| transport protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 389

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/336 (12%), Positives = 110/336 (32%), Gaps = 18/336 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +    +  +L+  +    P++ A        PI                +I  +     
Sbjct: 54  VLATLAVGYTLWAAQTIILPIMLAAFFALIGNPILRGLRKLYIPRFLGALLILCLG---- 109

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               L                 V  A +    + R + D+   +  +    ++ +     
Sbjct: 110 ----LAGTVTLAAQLAGPAAEWVQQAPRQMRQIARDVRDLTKPVMQANQAAENFARAAGG 165

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           +      +    +D   +   R          S++ +++  FFF   G S+ +   +L  
Sbjct: 166 EGQRGVQIVRTQMDDPYKALVR----TPKLAASVLAVVLLTFFFMVYGESLQRHAIALLP 221

Query: 194 HLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH--VALGVITAI 250
           +     +  +I   + + +    L +++I    GLV     ++  +P    +  G + A+
Sbjct: 222 NRQQQRFTTEIMLDIEREVSRYVLTISVINTLVGLVFAGILYVLQIPLPEAILWGTVVAL 281

Query: 251 MAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +   P   P+    + + +         ++    +       I  + + P ++G  + + 
Sbjct: 282 LNFAPYVGPLIGVMLMLLMGFVEFRTTLSSLLPAILYLALHTIEGQVVTPIVLGRRMAIS 341

Query: 309 FLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWK 343
            L     L+      G++GL +  P+L+ +  V+ +
Sbjct: 342 PLMLILALMLFGWLWGMVGLLLAVPLLVCIKMVLSR 377


>gi|326795182|ref|YP_004313002.1| hypothetical protein Marme_1915 [Marinomonas mediterranea MMB-1]
 gi|326545946|gb|ADZ91166.1| protein of unknown function UPF0118 [Marinomonas mediterranea
           MMB-1]
          Length = 345

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 45/322 (13%), Positives = 109/322 (33%), Gaps = 30/322 (9%)

Query: 14  WMIMFIILVSL----YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           +  + II+  L      +  F   V     I     P+ SS   KK    T+++++  V 
Sbjct: 14  FAALIIIIAGLKSASQIVVPFMLSVF----IAIICAPLMSSLRRKKV--PTWVSILIVVF 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++   +  +  L    + +    +       + G  + + ++ +             L  
Sbjct: 68  LILGGLGSIALLVGSSLDDFSNALPGYKE--RFGTELAKLIAQL-----------NTLGL 114

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S   +       + +       +  G +  +  L ++ ++  L     +   + ++L 
Sbjct: 115 QISYDQVKGYVDPASLMQMFANALTSLGGVLTNLFLVVLTVVFLL----FEAVELPKKLH 170

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
              ++       +  + +  V R   +  ++ A+  G +      + GV   +  GV   
Sbjct: 171 IALDN-AHRSLARFDQFIVTVNRYLVIKTSVSALTGGAIT-IWLAVIGVDFPILWGVCAF 228

Query: 250 IMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P  G+ I+     +   ++     A    L  A    IV   + P  +G  + L 
Sbjct: 229 LLNFVPNIGSIIAAIPAIMLAFVQLGTLGAGLTALGFAAVNLIVGNIIEPRYMGKGLGLS 288

Query: 309 FLPTFFGLVGGVRTMGLLGLFI 330
            L  F  L+      G +G+ +
Sbjct: 289 TLVVFLSLLVWGWVFGPVGMLL 310


>gi|325290688|ref|YP_004266869.1| sporulation integral membrane protein YtvI [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324966089|gb|ADY56868.1| sporulation integral membrane protein YtvI [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 357

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 49/305 (16%), Positives = 97/305 (31%), Gaps = 2/305 (0%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
             F P + A        P+      + +       VI  ++ +        FL     L+
Sbjct: 33  PHFVPFILAYFTATALDPLTCQLGRRLKIPLVPAVVITNLTFLGCLAFLFFFLASRIYLQ 92

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
             +L S +             LS     +         L     L  L       N    
Sbjct: 93  SLDLFSYIQDHLPQIQAWFGLLSKDISSLLELLPPGLSLQLTNGLNNLLSEITNPNLFAA 152

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +  +         ++    I   +++F F      I  +  S  +         I   + 
Sbjct: 153 LGLYTYGLSTAIPNFFFLAIIYFVSVFLFQLKLTEIHSRFYSFFKESSKKKVLFIFSDLR 212

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
           +          I++    ++  +   L GV     +     ++ ++P  G    F   + 
Sbjct: 213 QATLGFLKAQLILSTLTYILSFAGLTLLGVKYAYVIAFFITLVDVLPILGTGSFFVPWAF 272

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
             L+ GN F A  L +   I + ++ + L P ++G  I L  L T   +  G + +G++G
Sbjct: 273 VTLLLGNTFLAAGLLVV-FIIILVIRRALEPKILGESIGLSALATLMSIWLGFKIIGVVG 331

Query: 328 LFIGP 332
           +F+ P
Sbjct: 332 IFLFP 336


>gi|114769756|ref|ZP_01447366.1| transporter, permease [alpha proteobacterium HTCC2255]
 gi|114549461|gb|EAU52343.1| transporter, permease [alpha proteobacterium HTCC2255]
          Length = 345

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 52/309 (16%), Positives = 100/309 (32%), Gaps = 33/309 (10%)

Query: 41  GFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN 100
               WP+ + F                + V+ +F+  +  + +     ++  +S++ +  
Sbjct: 48  AIAKWPMMNYFSKFIHR----------LVVLLIFVSIVALISFMISNNIEYTLSQLPIYQ 97

Query: 101 QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIF 160
            +   V   L++              L +  SL  + E + K+  +      A  FG I 
Sbjct: 98  TNLQIVVDNLAE-----------GFGLINAPSLNKIIENWWKSIDLQSFAFRA--FGSIS 144

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV---IRSTFLG 217
               +  +  + A F       +     ++           +   I+ KV   I      
Sbjct: 145 SVGSILFMTALYAGFLL-----TEVNNFNAKISKALGGDATQALEIISKVNNRIGVYLTI 199

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIYLLIKGNI 275
            TII I    +     W+ G+ S V   V+   +  IP  G A      V + L   G++
Sbjct: 200 KTIINIILASISFLIMWVMGIDSAVFWAVMIGFLNYIPYVGSAIGVGFPVGLALAQFGSL 259

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             A    +        V   L P ++G  + L        LV      GL G  +   L 
Sbjct: 260 QWAILALVLLMAVQTYVGNILEPKMIGKSVNLSSFVVLLALVFWTTIWGLPGAILSIPLT 319

Query: 336 ALIAVIWKE 344
           + + ++  E
Sbjct: 320 SALVILLAE 328


>gi|315185727|gb|EFU19494.1| protein of unknown function UPF0118 [Spirochaeta thermophila DSM
           6578]
          Length = 348

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 49/344 (14%), Positives = 117/344 (34%), Gaps = 27/344 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M   +      +  + +  I   L+  +    P++ A ++ F   P+           + 
Sbjct: 1   MERLVRLQVIFLALLSLVAIGGVLHITQQVVLPLVIAALLSFILAPLVVRM-----HRAR 55

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               +    VM L ++ +  L       +  L+ +        I +   L D        
Sbjct: 56  IPYFLGITVVMLLLVLIIAGLGTLLSSSLYSLIREYPRYQTRFIGLYNTLVD-------- 107

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                         +    F   + +  I  +        ++     + +++ L F   +
Sbjct: 108 -----------RFHLREWLFNDLSWVRTIGSYLVGLSGRLVELVSYTVLVLLFLLFLLLE 156

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              + +++         A   +I   + + I        +I++  GL++ +AY L G+  
Sbjct: 157 WRHLPRKMLRALRRGLTARIARILEHISEQISRYLAVKFLISLATGLLVWAAYSLIGLDF 216

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWG--AIELFIVDKTLR 297
               G++  +   IP  G+ + +   S++ +I+        L + G   +   ++   L 
Sbjct: 217 AFIWGLLAFLFNFIPNIGSAVVWGLSSLFAVIQFYPDWQHPLLVSGSMILIQMVMGNLLE 276

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           P L G  + L  +   F L+      G+ G+FI   L  ++ ++
Sbjct: 277 PKLAGEQLNLSPVVVLFSLLFWGWLWGVAGMFIAVPLTVIVKIV 320


>gi|67922154|ref|ZP_00515669.1| Protein of unknown function UPF0118 [Crocosphaera watsonii WH 8501]
 gi|67856054|gb|EAM51298.1| Protein of unknown function UPF0118 [Crocosphaera watsonii WH 8501]
          Length = 357

 Score = 53.7 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 79/215 (36%), Gaps = 1/215 (0%)

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               +    S      +   L++   I+   +       +   + SL    +    K   
Sbjct: 143 SSQKLLIGVSDITRGIVGGVLNVFLAILLSGYMLSGSQKLINGIVSLFPVRWNDQLKAQV 202

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV-PSHVALGVITAIMAMIPGGAPISFT 263
             V + +     G  +++   GL +       G+    + LG I  I  +IP   P+  +
Sbjct: 203 IPVSQRMGGYIQGRLLVSFILGLAVSLGLKFLGIGEFALGLGTIAGITNLIPFFGPVLGS 262

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++ + +    +    + L   I   +    L P LVG  + +P L     ++ GV+ +
Sbjct: 263 IPALIVAVAQGGWLFLWVLLLFLIIQNLETYVLDPLLVGSSVNVPPLYQLLAVLSGVQLL 322

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           G+LG  I P  +A   V+ +   +  K   EK +S
Sbjct: 323 GILGALILPPWVAGAGVLLQNLYLIPKLEAEKENS 357


>gi|296284263|ref|ZP_06862261.1| permease [Citromicrobium bathyomarinum JL354]
          Length = 388

 Score = 53.7 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/264 (13%), Positives = 79/264 (29%), Gaps = 19/264 (7%)

Query: 50  SFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW 109
             I +       L ++  + +   F+V L +     + E    +  +V    + I     
Sbjct: 87  RLIGRYLPIPRTLRIVMVLLLAIAFLVWLGYFAGSQIAEQAATLPAIVEKQLNEIIALAQ 146

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
            + +             LS  QS+          +G+  + R       I     + +I 
Sbjct: 147 QNGM----------QVSLSDAQSMANQV-----VSGVGTVTRAIGGIAGIIGTTAIILII 191

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
            I        +     + ++ +      +  +K    +   +R    G  +  + EG   
Sbjct: 192 GIYVAL----EPNLYERGVEWMAPRGERSELRKTLAEMALTLRRLMAGRIVGMVFEGFFT 247

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
             A  + GVP    LG++T ++A IP    +    +   +    ++           +  
Sbjct: 248 WVALEMFGVPMAALLGILTGLLAFIPNIGAVVSGLLMATVGFSVSVETGLAAVAIYFVVQ 307

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTF 313
                 + P +    + LP     
Sbjct: 308 TFDGYVVIPMIARKTVDLPPALVL 331


>gi|293400883|ref|ZP_06645028.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305909|gb|EFE47153.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 375

 Score = 53.7 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 49/339 (14%), Positives = 120/339 (35%), Gaps = 21/339 (6%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
           ++   L+ F         + +   P+     +K   +  F  ++  + ++ + ++ ++ L
Sbjct: 44  IAYSVLQPFLYGFA----LAYIMNPLVLYMKAK-GLNKNFSILLLWIIILVILVILIVLL 98

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
                 ++ E +S ++   Q      + + ++      + L    +   ++         
Sbjct: 99  LPMLYAKINEFISSLIQGVQWISFKIKEIGNLKDFSLVNSLTDNIIKLLEAYDDWMPG-- 156

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                  +      +    LDY  +I+F II   +   D   +   +     HLF     
Sbjct: 157 -------LVSSLPSWMSTILDYVTNILFTIIIAIYMLFDFDRMKGYVKK-AFHLFIPNSD 208

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
                + + +      M ++ +   +   + Y+  G    + +G+I+A+ A+IP      
Sbjct: 209 IYLHEIDENVTVYLKSMALLILIRFVEYCAFYYCVGHHDWLIIGIISALGAVIPYIGGTV 268

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK-TLRPFLVGGPIKLPFLPTFFGLVGGV 320
             A+ I   +     +     + G I L  VD   + P +      L  L T F +  G 
Sbjct: 269 ANAIGILTGLT-LPSSNLAALIIGIIVLSNVDNYVISPIVHEKRSALGPLITLFAVFAG- 326

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              G++G  +G ++   + +  K +    ++  E  + N
Sbjct: 327 ---GVIGNVVGIMVSVPLVIAIKTTSELYQQRHEHSTFN 362


>gi|302338794|ref|YP_003804000.1| protein of unknown function UPF0118 [Spirochaeta smaragdinae DSM
           11293]
 gi|301635979|gb|ADK81406.1| protein of unknown function UPF0118 [Spirochaeta smaragdinae DSM
           11293]
          Length = 363

 Score = 53.7 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 72/209 (34%), Gaps = 3/209 (1%)

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
             E   + N    +     +     +++    + ++I L F   +     ++L    E  
Sbjct: 116 YEELLGQINWNSALRGSLVKVSGNLMNFISRFLIVMIFLIFLLLEKPYFKKKLQMAFEEK 175

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                  +   + + +         +++  G+ +  A  + G+   V  G +  ++  IP
Sbjct: 176 TGKKVGNMIEHINQQVARYLSLKFFLSLATGIAVWFALKIIGLDFAVVWGTLAFLLNFIP 235

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF---IVDKTLRPFLVGGPIKLPFLPT 312
                    ++I + I     +   +F      +    I+ + L P L G  + L     
Sbjct: 236 SIGSSFHMIITILMGIIQFYPSPGKIFAVALSMIGIQAIIGQFLDPKLQGHRLNLSPFVI 295

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            F L       G++G+F+   +  +I +I
Sbjct: 296 LFSLALWGWIWGVVGMFLAVPITVIIQII 324


>gi|315506301|ref|YP_004085188.1| hypothetical protein ML5_5576 [Micromonospora sp. L5]
 gi|315412920|gb|ADU11037.1| protein of unknown function UPF0118 [Micromonospora sp. L5]
          Length = 371

 Score = 53.7 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 68/184 (36%)

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           +    +   I      L      A  ++I R   +++     G  +I++  G +     +
Sbjct: 166 YLMVLEAPKIVAATLRLTGDGAAARLRRIGRDSSRIVTGYLSGNLLISLICGGLTFVVLF 225

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           L GVP    + +  A+  +IP          +       +      + ++  +   + + 
Sbjct: 226 LLGVPFAAVIALAVAVFDLIPLVGATLGALAAAGAAFLHSPTAGLVVLVFFVVYQQVENH 285

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            L+P ++G  ++L  L     ++  V   GL+G  +      ++ V+ +E   A ++   
Sbjct: 286 LLQPVIMGRAVRLNPLTVLVSVLLSVELAGLVGALLAIPAAGIVQVLLREFAPAGRQALP 345

Query: 355 KISS 358
           + + 
Sbjct: 346 QPAD 349


>gi|270261329|ref|ZP_06189602.1| putative transport protein [Serratia odorifera 4Rx13]
 gi|270044813|gb|EFA17904.1| putative transport protein [Serratia odorifera 4Rx13]
          Length = 350

 Score = 53.7 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 47/328 (14%), Positives = 115/328 (35%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T  + +  +   ++ IIL  +        P + A+ +     P+ +     +      ++
Sbjct: 7   TDRSLRLAIMLAMLVIILAGIKAAADIMVPFMLAVFLAMVLNPLVAQLERWRIPRVLGVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++    V+ L +   +                    N+    +P++   +   +   + +
Sbjct: 67  LLVVAVVVVLMLFIGMLGASL---------------NELARSLPQYRGMMMEKLRELQHY 111

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
               +   S   + +    +  ++ + R  S       +  L ++ ++  LF      + 
Sbjct: 112 ADRFNITLSTVAMLQYVDPSAAMNLVTRLLSHLSGAMTNIFLLLMTVVFMLFEVQLLPYK 171

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + Q LD   E +       I R +  V R   +    I++  G+++       GV     
Sbjct: 172 LQQALDKPSEGIA-----NIQRALEGVTRYLVIKTA-ISLATGIIVWVFLAAVGVRFAFI 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++  ++  IP  G+ I+     I  L+     +A  +     +   ++   L P ++G
Sbjct: 226 WGLLAFLLNYIPNIGSVIAAIPPLIQALLFNGFGDALVVAGGFIMINLVIGNMLEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     MG +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLMGPVGMLL 313


>gi|300115142|ref|YP_003761717.1| hypothetical protein Nwat_2619 [Nitrosococcus watsonii C-113]
 gi|299541079|gb|ADJ29396.1| protein of unknown function UPF0118 [Nitrosococcus watsonii C-113]
          Length = 350

 Score = 53.7 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 85/280 (30%), Gaps = 11/280 (3%)

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +  +  +         +L    + +     NQ        L     G    E   ++   
Sbjct: 71  LTLVIFLVFYLAIMGSLLLGPTIANNFSELNQIIPQALARLQTFLKGHDIIEQLLENFLQ 130

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                +L++         F            +   + ++ +    F+F  +       + 
Sbjct: 131 QDKATLLAQNMFSRIAGVF---------SSLMGLVVGLLIIFANGFYFSVEPQVYINGVL 181

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L           +   +  V+R   +G        G++      L  +PS  AL  + A
Sbjct: 182 HLFPKHRRKRASLVLSELGHVLRWWLVGRIASMTVIGILTWGGLLLLDIPSAAALAFLAA 241

Query: 250 IMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +++ +P  G  +S    ++   ++G   +   + L   I   +    + P +    I LP
Sbjct: 242 VLSFVPNIGPLLSVVPAALVGWLQG-PMSVLYVILLYTIIQTLESYVITPLIQRQVIMLP 300

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
                   +      G+LG+ +      +I V+ +   + 
Sbjct: 301 PALILTAQLAMGMAFGILGVLLATPFAVVILVLIQMLYIE 340


>gi|188578949|ref|YP_001915878.1| transport protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188523401|gb|ACD61346.1| transport protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 338

 Score = 53.7 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 42/341 (12%), Positives = 113/341 (33%), Gaps = 18/341 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +    +  +L+  +    P++ A+       PI                +I  +     
Sbjct: 3   VLATLAVGYTLWAAQTIILPIMLAVFFALIGNPILRGLRKLYIPRFLGALLILCLG---- 58

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               L       +            A QH   +   + ++   +  +    ++ +     
Sbjct: 59  ----LAGTVTLAVQLAGPAAEWAQQAPQHMQQIAHDVRNLTKPVMQANQAAENFARAAGG 114

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           +      +    +D   +   R          S++ +++  FFF   G S+ +   +L  
Sbjct: 115 EGQRGVQIVRTQMDDPYKALVR----TPKLAASVLAVVLLTFFFMVYGESLQRHAIALLP 170

Query: 194 HLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH--VALGVITAI 250
           +     +  +I   + + +    L +++I    GLV     ++  +P    +  G +  +
Sbjct: 171 NRQQQRFTTEIMLDIEREVSRYVLTISVINTLVGLVFAGILYVLKIPLPEAILWGTVVGL 230

Query: 251 MAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +   P   P+    + + +         ++    +       I  + + P ++G  + + 
Sbjct: 231 LNFAPYVGPLIGVMLMLLMGFVEFRTTLSSLLPAILYLALHTIEGQVVTPIVLGRRMAIS 290

Query: 309 FLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMA 348
            L    GL+      G++GL +  P+L+ +  V+ +  +M 
Sbjct: 291 PLMLILGLMLFGWLWGMVGLLLAVPLLVCIKMVLSRVDVMQ 331


>gi|297793067|ref|XP_002864418.1| hypothetical protein ARALYDRAFT_918735 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297310253|gb|EFH40677.1| hypothetical protein ARALYDRAFT_918735 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 648

 Score = 53.7 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 71/212 (33%), Gaps = 7/212 (3%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           I          F ++   ++  I  L+           +       +  +   +   ++ 
Sbjct: 441 IGNLIISGAAEFFNFISQLMVFIWVLYILITSESGGVTEQVMNMLPINASARNRCVEVLD 500

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSI 267
             I    L    IA  +G +    + L  +       V+  I A++P      +    ++
Sbjct: 501 LAISGVLLATAEIAFFQGCLTWLLFRLYNIHFLYMSTVLAFISALLPIFPYWFATIPAAL 560

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM--GL 325
            L+++G    A  L +   + +      ++  + G         T   ++GGV      L
Sbjct: 561 QLVLEGRYIIAVTLSVTHLVLMEYGASEIQDDIPGSNA----YITGLSIIGGVTLFPSAL 616

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
            G  +GP++  ++  +       +  + +KI+
Sbjct: 617 EGAIMGPLITTVVIALKDLYAEFVLNDPKKIN 648


>gi|161831421|ref|YP_001596783.1| hypothetical protein COXBURSA331_A1020 [Coxiella burnetii RSA 331]
 gi|161763288|gb|ABX78930.1| putative membrane protein [Coxiella burnetii RSA 331]
          Length = 344

 Score = 53.7 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 46/337 (13%), Positives = 106/337 (31%), Gaps = 23/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             +  + ++ +I+  L+  +  F P+  AL++ +    + +    +           A  
Sbjct: 7   NSVAAFALVVLIVYLLFIGRFLFLPLTIALVLWYVIISLTA-LYQRIPFKKRLSHGFALF 65

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +    + L   F      + +L+       Q    + RW + + GG            
Sbjct: 66  LAIVTTAIFLYLFFLMFTQSLPDLIEAAPAYQQKLYQLLRWFNVLVGGGRLYLGQLMRQI 125

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             +++       L                        +   +I+ LFF   +  S +Q+L
Sbjct: 126 DLKNIFSELPIILSLTAA-------------------NFTLVIVYLFFLLLEHRSFNQKL 166

Query: 189 DSLGEHLFPAYW-KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
             L           +I + + K + + F   T+I++   L+         + +       
Sbjct: 167 KLLCHSSKKYKKVTEIIKEITKDVNNYFKVKTLISLITALLSYFVLLGFKINNAEFWSTF 226

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
             ++  IP   P+      + +       +     L +       I+   + P  +G  +
Sbjct: 227 VFLLNYIPYIGPLIAVVTLLIVASIQVTQLVPFIFLGILLTAIQIILGNFVEPKWLGVRL 286

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            L  L     L       G +GLF+   +M ++ +I 
Sbjct: 287 NLSPLVILLSLAFWGSIWGFIGLFLSVPIMVILTIIL 323


>gi|77465347|ref|YP_354850.1| hypothetical protein RSP_3345 [Rhodobacter sphaeroides 2.4.1]
 gi|77389765|gb|ABA80949.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1]
          Length = 432

 Score = 53.7 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 79/213 (37%), Gaps = 5/213 (2%)

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            + + +  +        ++   A++ G +      +++ ++   F F    +   + L+ 
Sbjct: 175 DAEEAVLSSLRAVEISGYLRTLAAQAGTLM---QATVLVILFVGFLFAERVWFPVKLLNL 231

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
            G        ++I   +   +    L  T+++   GL++       G+     LG++T I
Sbjct: 232 FGNPDRARRVEEIVSSIMHRVNRYLLVKTLVSAITGLLVWGVAMAFGLDLAAPLGMLTFI 291

Query: 251 MAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +  IP    I      V +  +   ++  A  +     +  FI    L P L+G  ++L 
Sbjct: 292 LNFIPSLGSIVATLLIVLVTFVQTVDVSTALSVLALVGVIQFICGNILDPMLMGRALQLS 351

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                  L       G+ G+F+   +M  + ++
Sbjct: 352 SFGIIISLAFWGAIWGIPGMFLSVPIMVGLMIV 384


>gi|328471641|gb|EGF42518.1| putative permease [Vibrio parahaemolyticus 10329]
          Length = 342

 Score = 53.7 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 50/322 (15%), Positives = 117/322 (36%), Gaps = 19/322 (5%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           +LYF K    P++ +  +     P+ + F  K            T++V+    + +    
Sbjct: 25  ALYFAKPVLLPMVISTFVALLFSPLINYFEDKGLPR--------TITVVVTLTLLVSVSI 76

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                  +               V + ++++      ++  ++H++ P  L+I S+  + 
Sbjct: 77  LGLAAISEPAKQWWAELPSIVQNVSQEVNEV------TKASSEHMNAP--LEIASDMNID 128

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK- 201
             G + +                  + ++  ++F    G S+ ++  S            
Sbjct: 129 EMGNNTVFSLLKALATTTPTLLTQAMIVLFMVYFMLNHGRSLFRKSVSRLRGFSKQRQAV 188

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPI 260
           ++ + + K +      +T++  G GL +G  +++ G+      G    +M   P  G  I
Sbjct: 189 ELVQALQKDLSRYIGTITLVNAGLGLCVGLVFFVLGLEDPFLWGAFAGVMNFAPYLGPVI 248

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK-TLRPFLVGGPIKLPFLPTFFGLVGG 319
           S  +      ++ +  +     +   + L +++   + P L+G    L  L  F  LV  
Sbjct: 249 SMVSFGFVAYLQLDSVSFMLTVVSIYLLLNLIESQFVTPTLLGRRFNLNPLVIFMWLVFW 308

Query: 320 VRTMGLLGLFIGPVLMALIAVI 341
               G +GL IG  L+  I ++
Sbjct: 309 GWLWGGMGLLIGVPLLVCINIL 330


>gi|322382013|ref|ZP_08055959.1| hypothetical protein PL1_0835 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154024|gb|EFX46356.1| hypothetical protein PL1_0835 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 352

 Score = 53.7 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 57/160 (35%), Gaps = 1/160 (0%)

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              Q+ ++        Y+K+  R              +I+    ++     +  G P  +
Sbjct: 180 KFLQRFETSKVGFIYEYYKQFGRNFVNSFGKVMQVQILISFINSILSVIMLYFMGFPQIL 239

Query: 243 ALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            LGV+   + ++P    I     +SI     G   +   + +   I        L P L+
Sbjct: 240 GLGVMIFALGLVPVAGVIVSLIPLSIIAFQIGGWIHIVYVLVMITILHAFESYVLNPKLM 299

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
              +KLP   TF  L+   R +G+ GL IG  L      +
Sbjct: 300 SVKMKLPVFFTFAVLILFERLIGVWGLLIGIPLFMFFLDL 339


>gi|321461531|gb|EFX72562.1| hypothetical protein DAPPUDRAFT_308213 [Daphnia pulex]
          Length = 811

 Score = 53.3 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 68/186 (36%), Gaps = 6/186 (3%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           I       G   L++ ++ +  + AL++      S  + +  +   L P     +   + 
Sbjct: 584 ILSVLMGGGTAILNFFVNGVVFLTALYYLLVASDSQYKPIQMVSF-LSPGGGNTLGTAME 642

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSI 267
           + I +  +    +A   GL     + + GV   V    + A++  +P  G   +    ++
Sbjct: 643 EAITTVCMASLKLAAFYGLWTWLIHTIFGVNFVVIPVALAALLGAVPFLGTYWAALPAAL 702

Query: 268 YLLIKGNIF-NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
            L +  +    A  L  +      +VD +    + GG        T   + GG+  +G  
Sbjct: 703 DLWLAQSRGVEALLLIFFQFAPTLLVDASFYAEIKGGG---HPYLTGLAVAGGIFWLGFE 759

Query: 327 GLFIGP 332
           G  IGP
Sbjct: 760 GAIIGP 765


>gi|217077818|ref|YP_002335536.1| membrane protein [Thermosipho africanus TCF52B]
 gi|217037673|gb|ACJ76195.1| membrane protein [Thermosipho africanus TCF52B]
          Length = 327

 Score = 53.3 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 61/349 (17%), Positives = 112/349 (32%), Gaps = 37/349 (10%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSW---PIYSSFISKKEESSTFLAVIATVSVM 71
            ++ I  +    L  F   V  A+IIGF       + +  +SKK  +     VI+   ++
Sbjct: 5   FLILIYFILFLILIKFSPFVFGAVIIGFYFSIVIDVPAKLLSKKL-NKNLSKVISYTLML 63

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHLSHP 130
            L     +      + E K++ S++   + +G P +P W+ D                  
Sbjct: 64  SLIFYSFITFIPVILEEGKKIFSELSKISINGNPQLPSWILDFL---------------- 107

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                        N    I  FA         Y  SII M I +        ++   L  
Sbjct: 108 ------------NNSNKQISNFALNVLNQLFSYTPSIITMGILIIVTTLAVSNLKAYLKK 155

Query: 191 LGEHLF---PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
             +  F   P       R   K       G  ++A+  G+ +G   ++ G+   + LG++
Sbjct: 156 NLKSFFVYNPEKGYNFFRSFYKDFERFVSGQVLVALFVGISVGFLCFVFGIKGALFLGIL 215

Query: 248 TAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           + I   IP  G  I    + +               +   I   +      P +    +K
Sbjct: 216 SFITDFIPFLGVIIVSIPMLMLGWTSKGFTGIVLGIIILVIVNQLESWFFAPKIQSSNLK 275

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           + +      L+      G +G+ I    +  I   WK  I+       +
Sbjct: 276 IHWFVLIISLLIFNDFFGFIGILIAIPTILFIKKFWKYYILGGSYGNNR 324


>gi|78486409|ref|YP_392334.1| hypothetical protein Tcr_2070 [Thiomicrospira crunogena XCL-2]
 gi|78364695|gb|ABB42660.1| Conserved hypothetical protein; predicted membrane protein with
           DUF20 [Thiomicrospira crunogena XCL-2]
          Length = 348

 Score = 53.3 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 102/278 (36%), Gaps = 15/278 (5%)

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++++ +  V +  L  + ++           A      +P +   +   +       ++ 
Sbjct: 60  LAIILMLGVWITLLMLFVLILSHS-------AQTFNNNIPVYEDGLNDLLVELSPLFQYW 112

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           S P     L+E F   + I F+    +   +    + ++   ++    F   +  S++Q+
Sbjct: 113 SFPFFEATLNEHFSSESIIQFMADTLTGVSV----FVMNTFLVLFITIFLLMEESSLTQK 168

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
             +   +    Y  +      K +       T+I+   G+++        V      GV+
Sbjct: 169 FQAAWPN--SEYKIQAIAGFFKQVNRYIFIKTVISFITGVLVTLLLMFLDVDFPYLWGVL 226

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             +M  IP  G+ IS        LI+  +F+A  +     I   ++   + P L+G    
Sbjct: 227 AMLMNYIPNIGSLISAIPPVFLALIQVGVFDAVLVMSGFLIINVVLGNFIEPRLMGFEFG 286

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWK 343
           L  L  F  L+      G +G+ +  P+ M +   +++
Sbjct: 287 LSPLVVFLSLMVWGWMFGPVGMILSIPLTMIVQIALFQ 324


>gi|153840429|ref|ZP_01993096.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ3810]
 gi|149745907|gb|EDM57037.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ3810]
          Length = 342

 Score = 53.3 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 50/322 (15%), Positives = 117/322 (36%), Gaps = 19/322 (5%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           +LYF K    P++ +  +     P+ + F  K            T++V+    + +    
Sbjct: 25  ALYFAKPVLLPMVISTFVALLFSPLINYFEDKGLPR--------TITVVVTLTLLVSVSI 76

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                  +               V + ++++      ++  ++H++ P  L+I S+  + 
Sbjct: 77  LGLAAISEPAKQWWAELPSIVQNVSQEVNEV------TKASSEHMNAP--LEIASDMNID 128

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK- 201
             G + +                  + ++  ++F    G S+ ++  S            
Sbjct: 129 EMGNNTVFSLLKALATTTPTLLTQAMIVLFMVYFMLNHGRSLFRKSVSRLRGFSKQRQAV 188

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPI 260
           ++ + + K +      +T++  G GL +G  +++ G+      G    +M   P  G  I
Sbjct: 189 ELVQALQKDLSRYIGTITLVNAGLGLCVGLVFFVLGLEDPFLWGAFAGVMNFAPYLGPVI 248

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK-TLRPFLVGGPIKLPFLPTFFGLVGG 319
           S  +      ++ +  +     +   + L +++   + P L+G    L  L  F  LV  
Sbjct: 249 SMVSFGFVAYLQLDSVSFMLTVVSIYLLLNLIESQFVTPTLLGRRFNLNPLVIFMWLVFW 308

Query: 320 VRTMGLLGLFIGPVLMALIAVI 341
               G +GL IG  L+  I ++
Sbjct: 309 GWLWGGMGLLIGVPLLVCINIL 330


>gi|28896865|ref|NP_796470.1| putative permease [Vibrio parahaemolyticus RIMD 2210633]
 gi|260364667|ref|ZP_05777262.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           K5030]
 gi|260877766|ref|ZP_05890121.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|260895584|ref|ZP_05904080.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           Peru-466]
 gi|28805073|dbj|BAC58354.1| putative permease protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088588|gb|EFO38283.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           Peru-466]
 gi|308089745|gb|EFO39440.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|308112608|gb|EFO50148.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           K5030]
          Length = 342

 Score = 53.3 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 52/323 (16%), Positives = 117/323 (36%), Gaps = 21/323 (6%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           +LYF K    P++ +  +     P+ + F  K            T++V+    + +    
Sbjct: 25  ALYFAKPVLLPMVISTFVALLFSPLINYFEDKGLPR--------TITVVVTLTLLVSVSI 76

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                  +               V + ++++      ++  ++H++ P  L++ S+  + 
Sbjct: 77  LGLAAISEPAKQWWAELPSIVQNVSQEVNEV------TKASSEHMNAP--LELASDMNID 128

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK- 201
             G + +                  + ++  ++F    G S+ ++  S            
Sbjct: 129 EMGNNTVFSLLKALATTTPTLLTQAMIVLFMVYFMLNHGRSLFRKSVSRLRGFSKQRQAV 188

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           ++ + + K +      +T++  G GL +G  +++ G+      G    +M   P   P+ 
Sbjct: 189 ELVQALQKDLSRYIGTITLVNAGLGLCVGLVFFVLGLEDPFLWGAFAGVMNFAPYLGPVI 248

Query: 262 FTA---VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
             A      YL +    F  T + ++  +   I  + + P L+G    L  L  F  LV 
Sbjct: 249 SMASFGFVAYLQLDSVSFMLTVVSIY-LLLNLIESQFVTPTLLGRRFNLNPLVIFMWLVF 307

Query: 319 GVRTMGLLGLFIGPVLMALIAVI 341
                G +GL IG  L+  I ++
Sbjct: 308 WGWLWGGMGLLIGVPLLVCINIL 330


>gi|319947777|ref|ZP_08021976.1| hypothetical protein ES5_00632 [Dietzia cinnamea P4]
 gi|319438554|gb|EFV93475.1| hypothetical protein ES5_00632 [Dietzia cinnamea P4]
          Length = 375

 Score = 53.3 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 45/318 (14%), Positives = 100/318 (31%), Gaps = 24/318 (7%)

Query: 31  FAPVLSALIIGFTSWPIYSSFIS--KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
             P   AL +   + P+             +  + ++    ++   +  L++  +    E
Sbjct: 47  LMPAFLALNLVIAAQPLQRLLQRAGLPRWGAMIIVLLVLYLLLAALVGMLVWALWVAAEE 106

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           + +   K V   +  +                           SL+ + +       +  
Sbjct: 107 IPQYQDKFVALYEQSL------------ELLGGFGVSQDQVASSLQGVLDPGTIIGTVQN 154

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +    S  G         +  +IIAL F   D   I                        
Sbjct: 155 VAGQLSAAGG-------QLTVLIIALTFLVFDIPGI--FRRRAAIARQRPRLADALGSFT 205

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
             ++S ++  T+  +   ++   A W+ GVP  +  GV+  +   IP  G  +     ++
Sbjct: 206 DGVKSYWIVSTVFGLIVAVMDAVALWILGVPLALVWGVLAFVTNYIPNIGFVLGLVPPAL 265

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           + L+ G   +A  + +  +    ++   ++P   G  + L    TF  LV      G LG
Sbjct: 266 FALLTGGPGDAIWVVVIYSAINLVMQSFIQPKFTGDAVGLTPTVTFLSLVFWSAVAGPLG 325

Query: 328 LFIGPVLMALIAVIWKES 345
             +   L  ++     ++
Sbjct: 326 AILAVPLTLMVKAFLVDA 343


>gi|209518137|ref|ZP_03266966.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
 gi|209501441|gb|EEA01468.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
          Length = 357

 Score = 53.3 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/317 (12%), Positives = 95/317 (29%), Gaps = 15/317 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P++   +  +                      +     M L    + F     +    
Sbjct: 29  FVPIVFGGMAVYVVVDFTRLLQRIPVIGPRLPKQLRYGLSMFLIGAAIFFAIDMLVANYD 88

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            LV+            PR+   +   +          S P    +      + N    + 
Sbjct: 89  ALVALA----------PRYQDSVLLMIHKISTLLHLESEPTWESLRRNMLTQLNIQAMVT 138

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              +    + +D     + ++ A F          +  +        A  + +   + + 
Sbjct: 139 GMLASLSSVIIDL---FVIVLYASFLLVERRTFGDKLTNMTANSTNAARIRGVVTDINRR 195

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI--SFTAVSIY 268
           I +     T++ +  G V   A    G+       ++TA++  +P    +      V + 
Sbjct: 196 IGAYLALKTVLGVLLGAVCWLAMRAVGLEFAGLWAILTALLNYVPYIGSVLAVMFPVLMS 255

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           +L  G++ +   + +  +   F++   L P+L G  + L        +       G+ G 
Sbjct: 256 VLQFGDLNSILVVLVTLSAIHFVIGNILDPYLTGNSLNLSPFAILASMAVWSALWGVPGA 315

Query: 329 FIGPVLMALIAVIWKES 345
           F+   +   + +I+ E 
Sbjct: 316 FLAVPITVSMTIIFSEF 332


>gi|87303608|ref|ZP_01086387.1| hypothetical protein WH5701_10684 [Synechococcus sp. WH 5701]
 gi|87281832|gb|EAQ73796.1| hypothetical protein WH5701_10684 [Synechococcus sp. WH 5701]
          Length = 358

 Score = 53.3 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 48/354 (13%), Positives = 112/354 (31%), Gaps = 24/354 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFL-------KGFFAPVLSALIIGFTSWPIYSSFIS 53
           M      P+ ++  +   +++++L+         +G  +  + A +I      +    + 
Sbjct: 1   MPLPTRLPRPLVLGLAFPLVVLNLWVFGSLYRAFEGIASTFILAGVIALILN-LPVRLLQ 59

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
           ++       A+ +   +         FL    +     L   VV        +P+W+++ 
Sbjct: 60  RRLGLPRGWAIGSVFGL---------FLGVAVLAAATLLPLLVVRFLTFTQVLPQWITET 110

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF---IPRFASRFGMIFLDYCLSIIFM 170
              + +       L  P    ++               +             +      +
Sbjct: 111 GDNLSSISGRVNALGVPIDTSVIIRGMAANLTAQLESVLLNIPGFISGSLGSFFSLFFLL 170

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           ++ +FF    G  +   L S           ++  ++ +   S      +++      L 
Sbjct: 171 VLTIFFLIYGGELVRNCLVSWLPQ---DQGLRVLSVLRRNFNSYIFNQLVLSAVLISALT 227

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
            A  L   P  +  GV   +M  IP GA +    VS  L +  + +    +F    +   
Sbjct: 228 PALLLLRAPFPILSGVTIGLMGFIPFGAILGILLVSA-LFMLKSFWLGLRIFAVLIVVDQ 286

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           +++  L P L+G    L  +   F ++ G       G+     + A I  +  E
Sbjct: 287 VIENVLPPRLLGKLTGLNPIVILFSVMVGATLADFYGVITAVPIAATIKALLLE 340


>gi|146279674|ref|YP_001169832.1| hypothetical protein Rsph17025_3659 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557915|gb|ABP72527.1| hypothetical protein Rsph17025_3659 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 390

 Score = 53.3 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 82/213 (38%), Gaps = 5/213 (2%)

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            + + +  +        ++   A++ G +      +++ ++   F F    +   + L+ 
Sbjct: 141 DAEEAVLSSIRAVEISGYLRTLAAQAGALM---QATVLVILFVGFLFAERVWFPVKLLNL 197

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +G+       ++I   + + +    L  T+++   GL++       G+     LG++T I
Sbjct: 198 IGDPDRARRVEEIVGSIMRRVNRYLLVKTLVSAITGLLVWGVALAFGLDLAAPLGMLTFI 257

Query: 251 MAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +  IP    I      V +  +   ++  A  L  +     FI    L P L+G  ++L 
Sbjct: 258 LNFIPSIGSIVSTLLIVLVAFVQTVDVATALSLLAFVGAIQFICGNVLDPMLMGRALQLS 317

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                  L       G+ G+F+   +M  + ++
Sbjct: 318 SFGIIISLAFWGAVWGIPGMFLSVPIMVALMIV 350


>gi|166363128|ref|YP_001655401.1| hypothetical protein MAE_03870 [Microcystis aeruginosa NIES-843]
 gi|166085501|dbj|BAG00209.1| hypothetical protein MAE_03870 [Microcystis aeruginosa NIES-843]
          Length = 345

 Score = 53.3 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/309 (11%), Positives = 99/309 (32%), Gaps = 11/309 (3%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + + L  L+ ++     +  A++              +         +I  ++ + + I+
Sbjct: 12  LIMALYVLWQIRQLLLLIFMAIVFTVALNRCVKGL-QRLGIKRGLAILITLLTSLAIVIL 70

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             + +    + + ++L+  +  A           + I         W   L +   L   
Sbjct: 71  FFIIIVPPFIEQFQKLIELLPQAWDLVRN-----NSIQWRQQFQFDWLPSLPNLTDLFQQ 125

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +        +F   F++          L ++F+++       +     Q    L  + +
Sbjct: 126 LQPLGTFVFSNFFTFFSNSVAA-----ILQLLFVLVLAMMMLANPQPYRQAFLKLFPNFY 180

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               ++I  +    + +  LG+ I +   GL  G   WL  +   +   ++  ++  IP 
Sbjct: 181 RRRAEEILTLSEAGLGNWLLGIAISSTMVGLFSGFGLWLLQINLVLVHAILAGLLNFIPN 240

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             P +     I + +    +    + +   I   +    L P ++   + L    T    
Sbjct: 241 IGPTASVIFPILIAVIDAPWKIVAILILYFIIQNVESYWLTPTVMAKQVSLLPAITLIAQ 300

Query: 317 VGGVRTMGL 325
           +   +  G+
Sbjct: 301 IFFAQMFGI 309


>gi|163856737|ref|YP_001631035.1| hypothetical protein Bpet2425 [Bordetella petrii DSM 12804]
 gi|163260465|emb|CAP42767.1| hypothetical protein predicted by Glimmer/Critica [Bordetella
           petrii]
          Length = 357

 Score = 53.3 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 59/347 (17%), Positives = 110/347 (31%), Gaps = 23/347 (6%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +  +R +   ++L  LY     F P+  AL       P+  +   +       LA I T
Sbjct: 18  QRLSLRVIAGILVLGLLYLASPVFIPLAFALFTIALVAPLQRALAGRM---PAPLASILT 74

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++V    +   L L  +G   + + +       Q  + +              E    H 
Sbjct: 75  LAVTAGCVAAFLLLAGWGFGLIAQWIFGNAGRFQRLLSM--------------ETEGMHR 120

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                L++  +       +  +   A +   +     L+IIF+ + LF           +
Sbjct: 121 HGGMVLRLFVDNVNAAWLLRAVQELALKINSMLGLSFLTIIFVALGLFEL----DEAPGR 176

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L           W   +  V   +R   +  T+ ++  GL +      AG+    A G +
Sbjct: 177 LRKALGASRGRRWTAAAAEVAAKLRRYMIIRTVASVLTGLSVWLFTIYAGLELASAWGGL 236

Query: 248 TAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
             ++  IP   P+           +   ++  +  +FL       I    L P L G   
Sbjct: 237 AFLLNYIPFLGPLVATVFPALFAYVQYESLQASLAVFLSLNFIQVIYGCYLEPRLAGSAF 296

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            L  L     +       G+ G FIG  L+     ++     A K  
Sbjct: 297 SLSPLMVMLAVFFWGLVWGIPGTFIGVPLLITATAVFGAMSPAAKRQ 343


>gi|167463629|ref|ZP_02328718.1| hypothetical protein Plarl_13919 [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 343

 Score = 53.3 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 57/160 (35%), Gaps = 1/160 (0%)

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              Q+ ++        Y+K+  R              +I+    ++     +  G P  +
Sbjct: 171 KFLQRFETSKVGFIYEYYKQFGRNFVNSFGKVMQVQILISFINSILSVIMLYFMGFPQIL 230

Query: 243 ALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            LGV+   + ++P    I     +SI     G   +   + +   I        L P L+
Sbjct: 231 GLGVMIFALGLVPVAGVIVSLIPLSIIAFQIGGWIHIVYVLVMITILHAFESYVLNPKLM 290

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
              +KLP   TF  L+   R +G+ GL IG  L      +
Sbjct: 291 SVKMKLPVFFTFAVLILFERLIGVWGLLIGIPLFMFFLDL 330


>gi|21233325|ref|NP_639242.1| transport protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66770287|ref|YP_245049.1| transport protein [Xanthomonas campestris pv. campestris str. 8004]
 gi|21115157|gb|AAM43124.1| transport protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66575619|gb|AAY51029.1| transport protein [Xanthomonas campestris pv. campestris str. 8004]
          Length = 368

 Score = 53.3 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 43/336 (12%), Positives = 111/336 (33%), Gaps = 18/336 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +    +  +L+  +    PV+ A        PI                +I  +     
Sbjct: 33  VLATLAVGYTLWAAQTIILPVMLAAFFALIGNPILRGLRKLYIPRFLGALMILCLG---- 88

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               L                 V  A +    + R + D    +  +    ++ +     
Sbjct: 89  ----LAGTVALAAQLAGPAAEWVQQAPRQMRQIARDVRDFTKPVQQANQAAENFARAAGG 144

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           +      +    +D   +  +R          S++ +++  FFF   G S+ +   +L  
Sbjct: 145 EGARGIQIVRTQLDDPYKSLTR----TPKLAASVLAVVLLTFFFMVYGESLQRHAIALLP 200

Query: 194 HLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH--VALGVITAI 250
           +     +  +I   + + +    L +++I +  GLV     ++  +P    +  G + A+
Sbjct: 201 NRQQQRFTTEIMLDIEREVSRYVLTISVINMLVGLVFAGILYVLKIPLPEALLWGTVVAL 260

Query: 251 MAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +   P   P+    + + +         ++    +       I  + + P ++G  + + 
Sbjct: 261 LNFAPYVGPLIGVMLMLLMGFVEFRTTLSSLLPAILYLALHTIEGQVVTPIVLGRRMAIS 320

Query: 309 FLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWK 343
            L     L+      G++GL +  P+L+ +  V+ +
Sbjct: 321 PLMLILALMLFGWLWGMVGLLLAVPLLVCIKMVLSR 356


>gi|307257181|ref|ZP_07538953.1| hypothetical protein appser10_11810 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864343|gb|EFM96254.1| hypothetical protein appser10_11810 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 350

 Score = 52.9 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 74/212 (34%), Gaps = 3/212 (1%)

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL-DSL 191
           + I  E  L       +  F SR  + F     +I  + + + F   +      +L  +L
Sbjct: 116 ISITQEDVLNKFDPSVVMNFVSRLLLSFSSVVSNIFVLFLVVIFMLFESPMAKYKLALAL 175

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                 +  +     V   +       T+++   G+ +     +  V   V    +  ++
Sbjct: 176 SPDDDLSNEEYYLNQVLDGVIGYLGVKTVVSALTGISIWILLIVLDVQYAVLWATLAFLL 235

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             IP  G+ ++   + +  L+         + +       +    L P ++G  + L  L
Sbjct: 236 NYIPNIGSFLAGIPIVLQALLLNGFSVGIGVLIGVVGINMLFGNVLEPKMMGKRLGLSTL 295

Query: 311 PTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
             F  L+     +G +G+ +  P+ MAL   +
Sbjct: 296 VVFLSLLFWGWLLGTVGMLLSVPLTMALKIAL 327


>gi|289808945|ref|ZP_06539574.1| permease PerM [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 160

 Score = 52.9 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPI 260
           ++   + + I +   G  +  +  G+     + L G+   + L V+     +IP  GA +
Sbjct: 5   QVWNEMNQQITNYIRGKVLEMVVVGVATWLGFLLFGLNYSLLLAVLVGFSVLIPYIGAFV 64

Query: 261 SFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
               V  + L   G        F    I   +    L P L    + L  L     +V  
Sbjct: 65  VTIPVVGVALFQFGLGTEFWSCFAVYLIIQALDGNLLVPVLFSEAVNLHPLVIILSVVIF 124

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKES 345
               G  G+F    L  LI  +    
Sbjct: 125 GGLWGFWGVFFAIPLATLIKAVVHAW 150


>gi|195109412|ref|XP_001999281.1| GI24426 [Drosophila mojavensis]
 gi|193915875|gb|EDW14742.1| GI24426 [Drosophila mojavensis]
          Length = 815

 Score = 52.9 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 75/213 (35%), Gaps = 5/213 (2%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           I       G   +++ L +I    ALF+           +       + A   K++  + 
Sbjct: 599 ILSLLLSGGQACIEFILDMIVFFTALFYLLSSSQEKYAPMQITKYMGYSASGIKVADALE 658

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSI 267
             I    + M   +   GL     + + G         + A++A  P  G+        +
Sbjct: 659 NSITVVLVSMFKCSTFTGLFTWLVHTVFGARIVFLPSALAALLAAAPFLGSYWCAVPAFL 718

Query: 268 YLLIKGNIFNA-TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
            L +  + F A   LFL         +  +   L GG            + GG+  +G  
Sbjct: 719 ELWLAQDRFYAGLILFLLQFFVPSSFETAIYADLKGGG---HPYLNGLAIAGGMYWIGWQ 775

Query: 327 GLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G   GP+++     +++ + +A++ N+E   S+
Sbjct: 776 GAIFGPLMLCFFIGLFEVATLAMRTNQEPRRSS 808


>gi|209918913|ref|YP_002292997.1| putative transport protein [Escherichia coli SE11]
 gi|209912172|dbj|BAG77246.1| putative transport protein [Escherichia coli SE11]
          Length = 344

 Score = 52.9 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 43/328 (13%), Positives = 103/328 (31%), Gaps = 22/328 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I      +    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNTLVQHMVRWRVPRVLAVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ VM + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 126 HYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKFQQMMAR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+    + A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  L  F  L+     +G +G+ +
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLL 313


>gi|289669297|ref|ZP_06490372.1| transport protein [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 368

 Score = 52.9 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/336 (13%), Positives = 107/336 (31%), Gaps = 18/336 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +    +  +L+  +    PV+ A        PI                +I  +     
Sbjct: 33  VLATLAVGYTLWAAQTIILPVMLAAFFALIGNPILRGLRKLYIPRFLGALLILCLG---- 88

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               L       +            A Q    + R + D+   +  +    ++ +     
Sbjct: 89  ----LAGTVTLAVQLAGPAAEWAQQAPQQMRQIARDVRDLTKPVMQANQAAENFARAAGG 144

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           +      +    +D   +   R          S++ +++  FFF   G S+ +   +L  
Sbjct: 145 EGQRGVQIVRTQMDDPYKALVR----TPKLAASVLAVVLLTFFFMVYGESLQRHAIALLP 200

Query: 194 HLFPAYW--KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL-AGVPSHVALGVITAI 250
           +     +  + +  I  +V R       I  +   +  G  Y L   +P  +  G + A+
Sbjct: 201 NRQQQRFTTEIMLDIEREVSRYVLTISVINTLVGLVFAGILYALKIPLPEAILWGTVVAL 260

Query: 251 MAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +   P   P+    + + +         ++    +       I  + + P ++G  + + 
Sbjct: 261 LNFAPYVGPLIGVMLMLLMGFVEFRGTLSSLLPAILYLALHTIEGQVVTPIVLGRRMAIS 320

Query: 309 FLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWK 343
            L     L+      G++GL +  P+L+ +  V+ +
Sbjct: 321 PLMLILALMLFGWAWGMVGLLLAVPLLVCIKMVLSR 356


>gi|172036184|ref|YP_001802685.1| hypothetical protein cce_1269 [Cyanothece sp. ATCC 51142]
 gi|171697638|gb|ACB50619.1| hypothetical protein cce_1269 [Cyanothece sp. ATCC 51142]
          Length = 346

 Score = 52.9 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/331 (13%), Positives = 111/331 (33%), Gaps = 11/331 (3%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + I +   + ++       +A+ +      +    +    +  +   V+A   ++ +F V
Sbjct: 12  LLIAIYIFWKIRFIILLTFAAVALATAVNYLVQLLMKSGLKKRSVSIVVALFLLLLIFAV 71

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            LL +F   + ++++ +S + LA         WL +        E     +   ++L   
Sbjct: 72  FLLLIFPPFIDQVQQSLSLLPLAVDRIEAWLMWLQE-----TVPEQLVGEIQKLENLTRD 126

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                     +F   F+   G       L+I+ + + +           +   +     +
Sbjct: 127 LPGIATQLVGNFYSIFSGSLG-----VLLNILLVTVVMIMLLASPRPYIRLFLAFFPSFY 181

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                KI +     +     G+    +   L+      +  V   +A  ++  ++  IP 
Sbjct: 182 RRRAAKILKKSEIALVGWTKGILFNMLVITLLSWFGLSILQVKLSLANALLAGLLTFIPN 241

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             P+      I L +    + A  + +   +        L P ++   + L    T    
Sbjct: 242 LGPVLSCIPPIVLALIDAPWKALAVLILYILIQQAESNILTPLVMKQQVSLLPAVTLLAQ 301

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
                  G +GLF+  + + ++A +W E ++
Sbjct: 302 ASFAIFFGFIGLFLA-LPLTVVAQVWIEEVL 331


>gi|316935743|ref|YP_004110725.1| hypothetical protein Rpdx1_4441 [Rhodopseudomonas palustris DX-1]
 gi|315603457|gb|ADU45992.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           DX-1]
          Length = 367

 Score = 52.9 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 52/325 (16%), Positives = 109/325 (33%), Gaps = 28/325 (8%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           Y  K FF P+++A ++G    P  +S   +        AV+  ++ +   +  +  +   
Sbjct: 47  YVGKPFFLPIVTAFVVGTMLSP-MASLFERWHIPRGVSAVLIVLAGLAGVVFMIGLISVP 105

Query: 85  GML------EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            +       E+  L+   +      + + R L    GG  A    T  +     ++   E
Sbjct: 106 LIEWTNRLPELGSLMRDKLHVLDKPVAMWRQLQTALGGAEALAPATVQMPKLDWMQPTVE 165

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
               T     +        +         + M+                           
Sbjct: 166 FLSPTLTELVLFLVTLVLFVASWRGLRRALVMLF-------------------AGRDARL 206

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GG 257
              +I   + + + +  L +T+I +  G   G     AG+P+   LG + A +  IP  G
Sbjct: 207 RTLRILNEIEESLGAYLLTVTVINLCYGAATGLLLAAAGMPNPAGLGALAATLNFIPIIG 266

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGL 316
             + F  + +  ++      A  L  +G   L  ++   + P ++G  + L  L  F  +
Sbjct: 267 PFVMFVILCVVGIVSMPTLGAGLLAAFGFACLTFIEGHFITPTIIGRRLALNALAVFIAI 326

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVI 341
                  G +G F+   L+ +  V+
Sbjct: 327 AFWTWLWGPMGAFLASPLLIVGLVL 351


>gi|73670522|ref|YP_306537.1| hypothetical protein Mbar_A3067 [Methanosarcina barkeri str.
           Fusaro]
 gi|72397684|gb|AAZ71957.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 354

 Score = 52.9 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 90/251 (35%), Gaps = 13/251 (5%)

Query: 96  VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASR 155
           V  A Q G  +P + S +      +E+  + L +  S + LS   +              
Sbjct: 83  VGAAIQIGNQLPNYQSQL------TEILDELLPYLPSTEDLSLQSVFRGITSLAISLTVS 136

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH--LFPAYWKKISRIVPKVIRS 213
                ++   ++  +I+   F         ++ +   E   +  +   K  + + + I  
Sbjct: 137 VLNGLINAGTTVGIIIVTAAFLLLGAAGAQEKKEQKAEEQLVIESRLNKFGKGLIEFIVI 196

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIK 272
                 + AIG  ++L       G+   V  G++   +  IP  G  ++    + + L++
Sbjct: 197 RTEVNLVTAIGIAVILLIG----GIDFAVFWGILAFFLGYIPYIGLALTTIPPAFFGLLQ 252

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
                A  + +  +I   + +  + P L G  +KL     F  L+     +G  G+ +  
Sbjct: 253 YGFVGALAVIIAISIVNALTENVIFPSLAGKGLKLSPAIVFLSLLYWNYVLGATGMLLAT 312

Query: 333 VLMALIAVIWK 343
            L  ++ +I  
Sbjct: 313 PLTMVLKIILD 323


>gi|311897927|dbj|BAJ30335.1| hypothetical protein KSE_45540 [Kitasatospora setae KM-6054]
          Length = 344

 Score = 52.9 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 82/287 (28%), Gaps = 20/287 (6%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P+L A++I     P+    + +        A    + ++ +    L  +         
Sbjct: 45  VVPLLIAVLITALVEPVSRRLVVR-GLPRAPAAAAGCLLLVVVVGGALWVVVRLISDAAA 103

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L + +  A +       +   + G     E   + L                 G   + 
Sbjct: 104 GLAASLRAAAERASGTDPFAQAVRGAASGLEQLGRSLGAG--------VVSGALGGVGLA 155

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                 G++ L     ++          RD   +   L  +           ++R     
Sbjct: 156 AQVLACGVLTLALAFFLL----------RDRPQLVAALRRIAPAGQEEKVLGVARTGYGA 205

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
           +     G TIIA  +   +     L GVP  + LG +  + A +P  GA +S     +  
Sbjct: 206 MSGFMRGTTIIAGIDAGFIALGLTLLGVPHALGLGALVFVGAYVPYAGAFLSGLTAVVVA 265

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
              G +  A   F        +    L+P +    + L        +
Sbjct: 266 FADGGLGEALWAFGIVLGVQALEGAILQPAVQSRTVMLHPAVVLLTI 312


>gi|33322082|gb|AAQ06760.1|AF496103_1 UPF0018 permease [Lactobacillus delbrueckii subsp. lactis]
          Length = 101

 Score = 52.9 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 39/101 (38%)

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
           +    +      ++      LFF  +DG  +   L       +     K+   V + + S
Sbjct: 1   TSAATVATAVFTTLATAPFLLFFMLKDGHKLRPFLVKFAPQRWEQATSKLLHEVNQAVSS 60

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
             +G   +AI  G++L   Y + G P   AL + +  + +I
Sbjct: 61  YVIGQVSVAICVGIMLFIGYTIIGEPYGAALAICSGFLNLI 101


>gi|32035189|ref|ZP_00135223.1| COG0628: Predicted permease [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126208598|ref|YP_001053823.1| membrane protein [Actinobacillus pleuropneumoniae L20]
 gi|165976554|ref|YP_001652147.1| hypothetical protein APJL_1147 [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|190150455|ref|YP_001968980.1| membrane protein [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|303250123|ref|ZP_07336325.1| hypothetical protein APP6_1539 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|303253297|ref|ZP_07339446.1| hypothetical protein APP2_0608 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307246043|ref|ZP_07528125.1| hypothetical protein appser1_12460 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307248151|ref|ZP_07530179.1| hypothetical protein appser2_11320 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307252766|ref|ZP_07534657.1| hypothetical protein appser6_12800 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307255025|ref|ZP_07536843.1| hypothetical protein appser9_12590 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259461|ref|ZP_07541186.1| hypothetical protein appser11_12580 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307261610|ref|ZP_07543278.1| hypothetical protein appser12_11710 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|307263799|ref|ZP_07545405.1| hypothetical protein appser13_12100 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|126097390|gb|ABN74218.1| membrane protein [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
 gi|165876655|gb|ABY69703.1| putative membrane protein [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|189915586|gb|ACE61838.1| membrane protein [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|302647979|gb|EFL78186.1| hypothetical protein APP2_0608 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302651186|gb|EFL81340.1| hypothetical protein APP6_1539 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306852978|gb|EFM85201.1| hypothetical protein appser1_12460 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306855328|gb|EFM87503.1| hypothetical protein appser2_11320 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306859798|gb|EFM91820.1| hypothetical protein appser6_12800 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306861898|gb|EFM93874.1| hypothetical protein appser9_12590 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866397|gb|EFM98260.1| hypothetical protein appser11_12580 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306868733|gb|EFN00542.1| hypothetical protein appser12_11710 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306870920|gb|EFN02658.1| hypothetical protein appser13_12100 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 350

 Score = 52.9 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 74/212 (34%), Gaps = 3/212 (1%)

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL-DSL 191
           + I  E  L       +  F SR  + F     +I  + + + F   +      +L  +L
Sbjct: 116 ISITQEDVLNKFDPSVVMNFVSRLLLSFSGVVSNIFVLFLVVIFMLFESPMAKYKLALAL 175

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                 +  +     V   +       T+++   G+ +     +  V   V    +  ++
Sbjct: 176 SPDDDLSNEEYYLNQVLDGVIGYLGVKTVVSALTGISIWILLIVLDVQYAVLWATLAFLL 235

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             IP  G+ ++   + +  L+         + +       +    L P ++G  + L  L
Sbjct: 236 NYIPNIGSFLAGIPIVLQALLLNGFSVGIGVLIGVVGINMLFGNVLEPKMMGKRLGLSTL 295

Query: 311 PTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
             F  L+     +G +G+ +  P+ MAL   +
Sbjct: 296 VVFLSLLFWGWLLGTVGMLLSVPLTMALKIAL 327


>gi|149916663|ref|ZP_01905165.1| predicted permease [Plesiocystis pacifica SIR-1]
 gi|149822380|gb|EDM81769.1| predicted permease [Plesiocystis pacifica SIR-1]
          Length = 451

 Score = 52.9 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 52/366 (14%), Positives = 115/366 (31%), Gaps = 40/366 (10%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +++  L        PVL A  +   + P   +   +          I    V+    +
Sbjct: 18  LVVVVAGLRAAGPIVIPVLFAAFLTILAIPPVQALQRR-GFPDWLAVTIIVSGVLAGATL 76

Query: 77  PLLFLFYYGMLEMKE-----------LVSKVVLANQHGIPVPR------------WLSDI 113
             L +        +            + + + L +++G+                 + D+
Sbjct: 77  ITLLVGNSLADFSQNVDSYGDQLEAIISNWLSLLDEYGLSFIEGTKLPTSTGGELEVPDL 136

Query: 114 PGGM-------------WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIF 160
             G+              A             +   +   +       I   A       
Sbjct: 137 SPGVGEGAEGAAAEAVTGAEGGGAAEGGDESIMHPGTGALIDLIDPRMIANLAGSVVSSI 196

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
            +   + IF++    F   +   + ++L  L         ++ SR++   I+      T 
Sbjct: 197 GNALSNTIFVLFTTAFIMAEAAGLPRKL-QLALGSTTEDVERFSRVIDD-IQEYLSIKTW 254

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNAT 279
           I+   GL+        GV   V  G++   +  IP  G+ I+    ++  L++     + 
Sbjct: 255 ISGFTGLLAWGLCLAVGVDYPVLWGLVAFFLNYIPTLGSIIAAVPPTLLALVQFGWERSL 314

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
            L +       +V   L P ++G  + L  L  +  LV      G LG+F+   L  ++ 
Sbjct: 315 ILVVGYVAINLVVGSILEPRIMGKRLGLSTLVVWLSLVVWGWIWGSLGMFLSVPLTMVVK 374

Query: 340 VIWKES 345
           ++ + S
Sbjct: 375 ILLENS 380


>gi|258545629|ref|ZP_05705863.1| PerM family permease [Cardiobacterium hominis ATCC 15826]
 gi|258519096|gb|EEV87955.1| PerM family permease [Cardiobacterium hominis ATCC 15826]
          Length = 365

 Score = 52.9 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 47/359 (13%), Positives = 112/359 (31%), Gaps = 12/359 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             + NP  +        ++   YFL  +  PV+ ++ + +    I      +        
Sbjct: 14  RFLANPSLVALVAFGISLIAIFYFLGEWLLPVIISIALAYLLEGIIGKLE-RIGVRRAIA 72

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +     +   +   + L    + + K L+S +    Q    V  ++  +P        
Sbjct: 73  VSLVFFLFIAAILYLTVVLLPAIIDQAKLLISALPDYFQR---VQEYILLLPHKFPTIFS 129

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            +   S   S+      F K+               + +   + II + + LFFF +D  
Sbjct: 130 ESGVQSLLDSINGEIANFSKSLSGKLFYSV-----FVLIKALVYIILVPLLLFFFLKDKK 184

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I   L            + +   V   I +   G     +   L+      +  +   +
Sbjct: 185 LIMAWLGRFLPKRREI-IQDVWYEVDIQIGNYIRGKISEILVVWLLTFIPLHIFNLQYSL 243

Query: 243 ALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFL 300
            L  +  +  +IP  GA I    V +   ++  + +           + I+D   + P +
Sbjct: 244 LLSFMVGLSVLIPYIGATIVTIPVLVVAYMQYGLSSDFYWVSGLYFAVQILDGNVIVPLI 303

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
               + +  +     ++      G  G+F    L  ++  + +      K+  ++  + 
Sbjct: 304 FSEAVNIHPVAIIIAVLVFGGLWGFWGIFFAIPLATVVKAVMEAWRRYQKKGGDEGEAE 362


>gi|294056569|ref|YP_003550227.1| protein of unknown function UPF0118 [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615902|gb|ADE56057.1| protein of unknown function UPF0118 [Coraliomargarita akajimensis
           DSM 45221]
          Length = 354

 Score = 52.9 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 43/329 (13%), Positives = 103/329 (31%), Gaps = 19/329 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   Q  +   I+  +   L+  +    P++ A+++ +    +  +  S          V
Sbjct: 1   MKLQQVALTLFIIVTVFFLLHVGQSLLQPLVIAIVVAYLISILAHAISSIPLGEWRVPKV 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ V  + + +  +  L       ++ ++       ++       +  + G         
Sbjct: 61  LSMVLAVGVILASISMLISLITENIRSVIGIAPGLQENLEARIYDVYALFGVEREEAPNL 120

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +       L+   + F KT     +    SR G          I  +  +F       + 
Sbjct: 121 QEFMAEIDLRAYLQDFGKT-----VRNIVSRTG----------IIFVYLVFVLLEQ-RTF 164

Query: 185 SQQLDSLGEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           ++++ +L  +         +   + K IR       + +   GL+        GV     
Sbjct: 165 TRKIKALVPNKHRQEEVFTVIDRILKDIRLYIGIKVLTSASTGLLSYLVLKWIGVNFASF 224

Query: 244 LGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             V+  ++  IP    I       ++ L+            +       ++   + P L+
Sbjct: 225 WAVLIFLLNFIPTIGSIIATIFPSAMALIQFDTFRPFVICVIAITAIQLVIGSFIDPKLM 284

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           G  + L  L   F L       G+ G+F+
Sbjct: 285 GNRLNLSPLVILFSLGLWGAVWGIPGMFL 313


>gi|307250384|ref|ZP_07532332.1| hypothetical protein appser4_11640 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306857594|gb|EFM89702.1| hypothetical protein appser4_11640 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 350

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 74/212 (34%), Gaps = 3/212 (1%)

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL-DSL 191
           + I  E  L       +  F SR  + F     +I  + + + F   +      +L  +L
Sbjct: 116 ISITQEDVLNKFDPSVVMNFVSRLLLSFSGVVSNIFVLFLVVIFMLFESPMAKYKLALAL 175

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                 +  +     V   +       TI++   G+ +     +  V   V    +  ++
Sbjct: 176 SPDDDLSNEEYYLNQVLDGVIGYLGVKTIVSALTGISIWILLIVLDVQYAVLWATLAFLL 235

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             IP  G+ ++   + +  L+         + +       +    L P ++G  + L  L
Sbjct: 236 NYIPNIGSFLAGIPIVLQALLLNGFSVGIGVLIGVVGINMLFGNVLEPKMMGKRLGLSTL 295

Query: 311 PTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
             F  L+     +G +G+ +  P+ MAL   +
Sbjct: 296 VVFLSLLFWGWLLGTVGMLLSVPLTMALKIAL 327


>gi|213021887|ref|ZP_03336334.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 77

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            L+     LP L    G++GG+   G++GLFIGPVL+A+   ++   +  +     +   
Sbjct: 3   VLIRMGADLPLLLILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEVPAPTNEPEE 62


>gi|110800933|ref|YP_697338.1| sporulation integral membrane protein YtvI [Clostridium perfringens
           ATCC 13124]
 gi|110675580|gb|ABG84567.1| sporulation integral membrane protein YtvI [Clostridium perfringens
           ATCC 13124]
          Length = 354

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 120/335 (35%), Gaps = 9/335 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF-LKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M+  ++  + I  + I++ ++   +F    +  P L A I            I K + + 
Sbjct: 1   MKNLIIKSEKISVFFILYTLIFFTFFNTLKYTLPFLLAFIFSLLLKTPTQFLIKKFKLNV 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVL-ANQHGIPVPRWLSDIPGGMW 118
              + I+T     + I+           E   L + +    N +      +   +   + 
Sbjct: 61  GLASFISTFIFFLIIIILFTLFITSLAYESSSLTNYIQEIINTNSKEFQNYFISLQNWIE 120

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY---CLSIIFMIIALF 175
            + +    L+  ++  I S   +    + F      +  ++        + +IF +++ +
Sbjct: 121 VNFIDNAVLNLIKNTLISSFKEITVLILSFGTELIQKVFLLISYLPYTFMLLIFTVLSTY 180

Query: 176 FFYRDGFSI--SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           F  ++  +I  S+ L +     +      I   + K++ +       +     ++    +
Sbjct: 181 FLSKELNTINFSKTLSNYLNSNYSNRILTILYEIKKMLLTYCFSYLFLIFISFVLTFLGF 240

Query: 234 WLAGVPS-HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
               +    +   +   +  +   G P+ +  +       GNIF+A  LF+   I +F++
Sbjct: 241 SFLNIKYALLLSVLAALLDLLPVLGMPLIYFPLIFISYNSGNIFSAISLFILY-IFIFLL 299

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            + L P L+   + +  L     +  G+   GLLG
Sbjct: 300 RQFLEPKLMSSTLGIHPLLILICIFIGLELNGLLG 334


>gi|33865598|ref|NP_897157.1| hypothetical protein SYNW1064 [Synechococcus sp. WH 8102]
 gi|33632768|emb|CAE07579.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 358

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 53/333 (15%), Positives = 121/333 (36%), Gaps = 6/333 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + L+ +   + +A+++      + ++   +         + +   +  L  V +  L   
Sbjct: 20  WNLRQWLLLLFAAIVLALALCSLVNAVQRRFPMRRPMALLASLSGLGLLLTVLMAVLVPP 79

Query: 85  GMLEMKELVSKVVLANQHGIPV----PRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
            + E   L+ K+  A +  + +       +S+   G+ A     +     QS+   + T 
Sbjct: 80  FIDEFALLLQKLPQAARALLQLALSGLDQVSEALYGVDAMPDLEQLGLQSQSILPDTSTL 139

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
              +G+                  LS++F+I A         +  Q    L    +    
Sbjct: 140 --ASGVGSGLIGLLGLAGNLGSAGLSLLFVIAAALMVAVQPQAYRQVGILLVPSFYRRRA 197

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
            +I  +  + + S  +G+ I ++   L+ G A WL GV   +A  ++  ++ +IP   P 
Sbjct: 198 NQILTLCGEALNSWMVGVGISSLAVFLLCGIALWLLGVKLVLANALLAGVLNVIPNVGPT 257

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
             T   + + +    + A  +     +   +    + P ++   +KL    T    V   
Sbjct: 258 MSTVFPMAVALLDAPWKAAAVLGAYVVIQNLESYVITPSVMHHQVKLLPGLTLAAQVLFT 317

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              G LGL +   L  ++ V+  E ++    N+
Sbjct: 318 VVFGPLGLLMALPLAVVLQVLIGEVLINDVLNR 350


>gi|312134324|ref|YP_004001662.1| sporulation integral membrane protein ytvi [Caldicellulosiruptor
           owensensis OL]
 gi|311774375|gb|ADQ03862.1| sporulation integral membrane protein YtvI [Caldicellulosiruptor
           owensensis OL]
          Length = 370

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 63/360 (17%), Positives = 115/360 (31%), Gaps = 24/360 (6%)

Query: 1   MRETMLNPQGIMRWMIMFI---ILVSLYFLKGF----------FAPVLSALIIGFTSWPI 47
           MRE   N   +    ++ I   I   +Y +K F          F PV+  L+I   S P+
Sbjct: 1   MREFTKNRFVVTMIYVILISAFIFSCVYLIKTFDLFVRFVIKAFIPVIVGLLIAEVSEPL 60

Query: 48  YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
                 +K  S T  A+   + +  +    L    Y  + E   LV+ +   +   I   
Sbjct: 61  LKYLEKRKV-SRTISAIFILIVLNLILGFMLAEGIYILVNECMSLVTSLQNIDYDKIY-- 117

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
                +     + +     L  P    I S     TN ++ I   + +   +       I
Sbjct: 118 ---QTLDKLFASVKNIYSGLPGPIINFIQSGVDELTNVLNQIATMSLKVIKVIPATLKGI 174

Query: 168 IF---MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
                 +++ FFF RD   +   L              I   V   +        I++  
Sbjct: 175 TVWFFSVLSSFFFMRDRHRMRAWLIQNFSAQLYKEISSIVFKVIDSVVDYAKSQIILSAL 234

Query: 225 EGLVLGSAYWLAGVPS-HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
             L       +   P   V   ++  +  +   G+ I          I G+      L +
Sbjct: 235 MFLSGLIGLSIIKAPYFLVVSLLLGLLSIIPIIGSGIILLPWIAGSFIAGDTNFGIKLLV 294

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              I L + +      +V   + +    T   +  GV   G  G  IGP+L+  +  +++
Sbjct: 295 VYLIILGLRE-FASIKIVASQVGISTFTTLVSIYAGVEVFGAWGFVIGPLLVVFLKAVYE 353


>gi|285017242|ref|YP_003374953.1| permease family protein [Xanthomonas albilineans GPE PC73]
 gi|283472460|emb|CBA14965.1| putative permease family protein [Xanthomonas albilineans]
          Length = 387

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 44/334 (13%), Positives = 107/334 (32%), Gaps = 17/334 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +    +  +L+  +    PVL A        PI                +   ++ + +
Sbjct: 52  VLATLAVAYTLWAAQQVILPVLLAAFFALIGNPILRLLRRLY--------LPRFLAALVV 103

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +  +       +         V  A      +   + D+   M  +    +  +     
Sbjct: 104 LLSGMALAATLTVQLAGPAAVWVQQAPAQMRHIATQVHDLTKPMQLANQAAESFARAAGG 163

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                  +    +D   R   R          S + +++  FFF   G ++ +   +L  
Sbjct: 164 DGGPRVQVIRTQMDDPYRALVR----TPRLAASALAVVLLTFFFMVFGENLQRHAIALLP 219

Query: 194 -HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGVITAI 250
                 +   I R + + +    L +++I    GLV      L  +     +  G + A+
Sbjct: 220 SRQQQKFTTDILRSIEQEVSRYVLTISVINTLVGLVFAVILILLNITPQEALLWGTVMAL 279

Query: 251 MAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +   P   P+    + + +  +   +  +AT   L+      +  + + P ++G  + + 
Sbjct: 280 LNFAPYVGPLIGVVLMLLMGFVAFRDPLSATLPALFYLALHLLEGQVVTPIVLGRRMAIS 339

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            L     L+      G++GL +   L+  I ++ 
Sbjct: 340 PLMLILALMLFGWLWGMIGLLLAVPLLVCIKIVL 373


>gi|194899400|ref|XP_001979248.1| GG14330 [Drosophila erecta]
 gi|190650951|gb|EDV48206.1| GG14330 [Drosophila erecta]
          Length = 818

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 75/212 (35%), Gaps = 5/212 (2%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           I       G   +++ L +I    ALF+           L       + +   KI+  + 
Sbjct: 603 ILSLVLSGGQACIEFILDMIVFFTALFYLLSSSQEKYAPLQITKYLGYSSSGIKIADALE 662

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSI 267
             I    + M   A   GL     + + G         + A++A  P  G+        +
Sbjct: 663 NSITVVLVSMFRCATFTGLFTWLVHTVFGARIVFLPSALAAMLAAAPFLGSYWCAVPAFL 722

Query: 268 YLLIKGNIFNA-TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
            L +  + F A   LFL         +  +   L GG            + GG+  +G  
Sbjct: 723 ELWLAQDRFYAGLILFLLQFFVPSSFETAIYADLKGGG---HPYLNGLAIAGGMYWIGWQ 779

Query: 327 GLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           G   GP+++     +++ + +A++ ++E  +S
Sbjct: 780 GAIFGPLMLCFFIGLFEVATLAMRSHQEPRNS 811


>gi|269956187|ref|YP_003325976.1| hypothetical protein Xcel_1387 [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304868|gb|ACZ30418.1| protein of unknown function UPF0118 [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 369

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/312 (12%), Positives = 95/312 (30%), Gaps = 19/312 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
            F+I  ++  + G   P++ A ++G    P+      +        A    V++  +  V
Sbjct: 32  AFVIYSAVSLVSGLAIPLVVAAVLGVLLHPVVDRLE-RLGLPRGLGASAVLVALAVVLGV 90

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +       + +  E+V ++                  G    + L  +       L ++
Sbjct: 91  AVWLTVVGVVEQSTEIVDRLTR----------------GLAELASLEVQFAGTSVDLSVV 134

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                                     + +     +  L++   D   + + L +    + 
Sbjct: 135 DLGDATAAISGGAASLFGSVFSSAAAFAMGTFIAVFFLYYILADWHRL-KVLATRHTAIG 193

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                 +       +R  F  MT   +   + +  A  L  VP   ++ ++T + + +P 
Sbjct: 194 VTSGHDVVEGATTTLRRYFGAMTSSNLVSAVAIAIAAALLDVPLAFSIALVTFVTSYVPF 253

Query: 257 GAPISFTAVSIYLLI-KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              I   A ++ + +       A  L     +   ++   +   L    ++L  +     
Sbjct: 254 LGAIFSGAFAVLIALGSRGPVQALVLLGVVIVMQNVLQTLILTKLSSDRLRLHPIVNLGS 313

Query: 316 LVGGVRTMGLLG 327
            + G    GLLG
Sbjct: 314 TIVGTVFAGLLG 325


>gi|254673006|emb|CBA07533.1| permease [Neisseria meningitidis alpha275]
          Length = 253

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 95/246 (38%), Gaps = 8/246 (3%)

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           +  WL +  GG      + +         + + T   +N +        R G   +    
Sbjct: 5   LLPWLKNTIGG------YVEIDQASIIAWLQAHTGELSNALKAWFPVLMRQGGNIVSSIG 58

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           +++ + + L++F  D    S  +  L    F   + +I+  + +V+     G  ++ +  
Sbjct: 59  NLLLLPLLLYYFLLDWQRWSCGIAKLVPRRFAGAYTRITGNLNEVLGEFLRGQLLVMLIM 118

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           GLV G    L G+ S  A+G++  I+  +P     +   ++    +         L +W 
Sbjct: 119 GLVYGLGLVLVGLDSGFAIGMLAGILVFVPYLGAFTGLLLATVAALLQFGSWNGILSVWA 178

Query: 286 AIEL--FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              +  F+    + P +VG  I L      F L+   + MG +G+  G  L A+  V+ +
Sbjct: 179 VFAVGQFLESFFITPKIVGDRIGLSPFWVIFSLMAFGQLMGFVGMLAGLPLAAVTLVLLR 238

Query: 344 ESIMAI 349
           E +   
Sbjct: 239 EGVQKY 244


>gi|188993486|ref|YP_001905496.1| Putative permease family protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167735246|emb|CAP53460.1| Putative permease family protein [Xanthomonas campestris pv.
           campestris]
          Length = 368

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 44/336 (13%), Positives = 111/336 (33%), Gaps = 18/336 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +    +  +L+  +    PV+ A        PI                +I  +     
Sbjct: 33  VLATLAVGYTLWAAQTIILPVMLAAFFALIGNPILRGLRKLYIPRFLGALMILCLG---- 88

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               L                 V  A +    + R + D    +  +    ++ +     
Sbjct: 89  ----LAGTVALAAQLAGPAAEWVQQAPRQMRQIARDVRDFTKPVQQANQAAENFARAAGG 144

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           +      +    +D   +  +R          S++ +++  FFF   G S+ +   +L  
Sbjct: 145 EGARGIQIVRTQLDDPYKSLTR----TPKLAASVLAVVLLTFFFMVYGESLQRHAIALLP 200

Query: 194 HLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH--VALGVITAI 250
           +     +  +I   + + +    L +++I +  GLV     +L  +P    +  G + A+
Sbjct: 201 NRQQQRFTTEIMLDIEREVSRYVLTISVINMLVGLVFAGILYLLKIPLPEALLWGTVVAL 260

Query: 251 MAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +   P   P+    + + +         ++    +       I  + + P ++G  + + 
Sbjct: 261 LNFAPYVGPLIGVMLMLLMGFVEFRTTLSSLLPAILYLALHTIEGQVVTPIVLGRRMAIS 320

Query: 309 FLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWK 343
            L     L+      G++GL +  P+L+ +  V+ +
Sbjct: 321 PLMLILALMLFGWLWGMVGLLLAVPLLVCIKMVLSR 356


>gi|218961758|ref|YP_001741533.1| hypothetical protein CLOAM1477 [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730415|emb|CAO81327.1| conserved hypothetical protein; putative membrane protein
           [Candidatus Cloacamonas acidaminovorans]
          Length = 352

 Score = 52.5 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 55/321 (17%), Positives = 116/321 (36%), Gaps = 14/321 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFIS-KKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           LK  F P++ ++ + F   P+ +     K       L  +  ++V    ++ L++     
Sbjct: 29  LKSIFIPLIFSIFLLFLFAPLINYLKKHKFPMVLILLITLVIIAVFLGLVILLIYAASNS 88

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           ++           A               G  +   L T    + +++ I +   + ++G
Sbjct: 89  LINGLPRYEDKFNALIAK-----------GTEYLQNLATNWNINTENISIANIAQILSSG 137

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           I  IP+F S      +    +I  +I  L F   +   +  +L      L       I +
Sbjct: 138 IISIPQFLSNTVNTLVSIIQNIFLIIFFLIFLLLEIDKLPLRLRKATSKLSKEQTLDILQ 197

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS--FT 263
            + K I++     T++ +   L+      + GV   +  G++  ++  IP    +     
Sbjct: 198 NIEKQIQNYLTIRTLVNLSAALLCMLWMLIFGVDFILVCGILLFVLDFIPDVGSVISSAI 257

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
            + IYL+  G  F      L       ++   + P L G  + L  +     L+      
Sbjct: 258 PILIYLMQSGFSFLWLIFALLIVATQMLIGNIIEPKLQGVQLNLTPIMVLVSLIFWGWLW 317

Query: 324 GLLGLFIGPVLMALIAVIWKE 344
           G++G+ I   L + I +I K+
Sbjct: 318 GIVGMLICVPLTSAINIILKQ 338


>gi|116072044|ref|ZP_01469312.1| hypothetical protein BL107_07829 [Synechococcus sp. BL107]
 gi|116065667|gb|EAU71425.1| hypothetical protein BL107_07829 [Synechococcus sp. BL107]
          Length = 363

 Score = 52.5 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 45/294 (15%), Positives = 99/294 (33%), Gaps = 15/294 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
              F    ++A +I F         + +             +  + + ++    L  + +
Sbjct: 31  FAPFPGLFITAALIAFLLDIPCRWLMGRGLPR---------LPAITVVVLLTAGLLAFAV 81

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
           +E+  L+  +V  +Q     P  L+    G+   + W      P     LS   +    I
Sbjct: 82  VELLPLL--IVQLSQLISAAPSLLTAAEQGINQGQAWAIAHGLPADFADLSSDLVSQ--I 137

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI-SR 205
             +    S+  +  L   +      + +          S  + +      PA W+++ + 
Sbjct: 138 SRVATQLSQRLLSILGATVGTSINTVIVLVLAVFLLLGSDSITAGLAQWLPARWRELVTT 197

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + +  R  F G  ++A+         + +  +P  V   V+     +IP  + ++   V
Sbjct: 198 TLGRTFRGYFAGQVVLALILSGGQLLVFTVLEIPYGVLFAVLIGFSTLIPYASALTIVFV 257

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           S  L ++ +      L         IVD+ ++P L+G  + L        L  G
Sbjct: 258 SAILGVQ-DPRTGLELLAAAIAVGQIVDQVIQPRLMGSIVGLQPAWLLIALPVG 310


>gi|313639226|gb|EFS04161.1| YubA [Listeria seeligeri FSL S4-171]
          Length = 238

 Score = 52.5 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 69/197 (35%), Gaps = 5/197 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            LK   AP++ A I  +   P+      KK +    +A++  V +  + ++   F+    
Sbjct: 47  ILKTVAAPIVLAGISYYLFNPVIDWLEKKKWKRGWAIALLYVVIIGLIILL-FSFVIPAV 105

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++  L             + +  ++        +L  K  ++   +         +  
Sbjct: 106 KDQIVSLFKTFPGY---WDQITQKFNEFSQSSLFDQLKDKLSTNMSDIMKTLSEKGTSVL 162

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              I    S  G +  +  L+I+   + LF+  +DG  +   L  +      A+ +++  
Sbjct: 163 NSAITSVGSIVGTVT-EVVLAIVTTPLVLFYLLKDGKKLPDFLLKMLPVNGRAHTRQVLG 221

Query: 206 IVPKVIRSTFLGMTIIA 222
                I S   G  I++
Sbjct: 222 EANHQISSYIRGQIIVS 238


>gi|326432003|gb|EGD77573.1| hypothetical protein PTSG_08670 [Salpingoeca sp. ATCC 50818]
          Length = 595

 Score = 52.5 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 63/190 (33%), Gaps = 9/190 (4%)

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
           +   ++   I  + F      +   +  +           + R    VI + F     +A
Sbjct: 359 FGSQLLVFGIFFYEFTAADDDLLSTIIHVLVPASRHTRNLVIRNCQMVISAAFFIPLSLA 418

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL- 281
               L       + G+        ++ ++ ++P   P+    V     I      +T L 
Sbjct: 419 SLHALTTLVMTTVLGIRFRFFATFLSFVVTLVPITDPLVVPIVWAVAPIIHVTITSTGLT 478

Query: 282 -----FLWGAIELFIVDKTLRPFLVGGPIKL---PFLPTFFGLVGGVRTMGLLGLFIGPV 333
                 ++  + ++      R  L    ++      + T F ++ G    G+ G  +GP+
Sbjct: 479 SLVKAVVFLLVCVYTYSYANRLVLEQQRVQEVTGNPVLTLFSVLLGCYAFGIAGFILGPL 538

Query: 334 LMALIAVIWK 343
            + L+ ++ +
Sbjct: 539 ALYLLMMVVR 548


>gi|226326456|ref|ZP_03801974.1| hypothetical protein PROPEN_00304 [Proteus penneri ATCC 35198]
 gi|225205055|gb|EEG87409.1| hypothetical protein PROPEN_00304 [Proteus penneri ATCC 35198]
          Length = 162

 Score = 52.5 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 51/151 (33%), Gaps = 2/151 (1%)

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTA 264
            V + I +   G     I  G+     +    +   V L VI  +  ++P  GA ++   
Sbjct: 8   EVNQQITNYIRGKVTEMIIVGVFTYFVFAFFDLRYSVLLAVIVGVSVLVPYVGAVLATIP 67

Query: 265 VSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
           V +  L +  + +    LF+   +   +    L P L    + +  L     ++      
Sbjct: 68  VIVIALSQWGLGSDFWALFIAYLVVQGLDSNLLVPILYSEAVNMHPLVIILSVIIFGGMW 127

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G  G+F    L  LI  +       I   + 
Sbjct: 128 GFWGVFFAIPLATLIKAVLHALPDEIANEQH 158


>gi|320450202|ref|YP_004202298.1| hypothetical protein TSC_c11290 [Thermus scotoductus SA-01]
 gi|320150371|gb|ADW21749.1| hypothetical protein TSC_c11290 [Thermus scotoductus SA-01]
          Length = 219

 Score = 52.5 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 67/159 (42%), Gaps = 1/159 (0%)

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +     +L  + W ++     K +        +IA+   L+ G   ++ GVPS  ALGV+
Sbjct: 59  VARAAPYLPGSGWTEVLEDTWKRMGYWARAQFLIALSFALLFGGWLFVLGVPSPFALGVL 118

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIK 306
             ++ ++P    I+  +++  + +      A  L L G   + +++ K L P++ G  + 
Sbjct: 119 GGVLEVVPFVGGIATASLAALVALSAKGPLAALLVLAGYGVIALLEGKVLIPYIYGRTVG 178

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
                    +    +  G LG+F+   +  L A I K  
Sbjct: 179 FHPALVLLAIFAFGKLFGFLGIFLAVPMTILGAGILKHW 217


>gi|115524867|ref|YP_781778.1| hypothetical protein RPE_2861 [Rhodopseudomonas palustris BisA53]
 gi|115518814|gb|ABJ06798.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           BisA53]
          Length = 377

 Score = 52.5 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 47/342 (13%), Positives = 95/342 (27%), Gaps = 11/342 (3%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAP----VLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           I    IM ++ V       +FA     + + ++ G     +                 + 
Sbjct: 28  IAIGGIMTVLAVGFLVFTWYFAATLFLIFAGILFGVFLSALTGLLGRVIGGGHGVRLALV 87

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            V +  +    ++        + + L + +     +G     +L +        EL    
Sbjct: 88  CVLLTGMSTGVMVLGGSTIAQQARLLSNTIKAQIVNG---KAFLEEHGVDTSFLELGAPA 144

Query: 127 LSHPQSLKILSETF----LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            +   S               +G   I     +  +  +    +   +I     F     
Sbjct: 145 PAGEPSTVTPPRNLPSAGAIASGGGAIVSQTLKLILGAVSAVGNFFIVIFLGVCFAAQPS 204

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                L         A+  +I   +  V++   L   I       +      + GVP   
Sbjct: 205 VYRSGLLRFIPSPHRAFAAEIVDDIGDVLQRWLLAQMITMTAVFAITAIGLKIIGVPGAF 264

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            LG+   ++A IP    I    + +   I          F+       +    L P +  
Sbjct: 265 ILGIQAGLLAFIPTLGAILGGLIIVLASIASGWVAVISAFVLFLGVHALESYILTPLIQR 324

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             + +P    F   +      GL GL +   LMA+  V+   
Sbjct: 325 QALDIPPATLFAMQILLGMVFGLWGLALALPLMAIAKVVMDH 366


>gi|299535461|ref|ZP_07048783.1| hypothetical protein BFZC1_05553 [Lysinibacillus fusiformis ZC1]
 gi|298729222|gb|EFI69775.1| hypothetical protein BFZC1_05553 [Lysinibacillus fusiformis ZC1]
          Length = 338

 Score = 52.5 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 42/332 (12%), Positives = 105/332 (31%), Gaps = 27/332 (8%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            ++ +    +  F  PV  A+ + F+++PI +        +    A+I  V ++    + 
Sbjct: 32  VLLFIFYLVILWFVLPVSLAIFLSFSTYPIINFLHRYCRIAYWIAAIIVEVLILTCIFLL 91

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           ++      ++   E+   +                               S  +S+ +  
Sbjct: 92  VVISINSIIVIFPEIRETLQNF-------------------------PLFSEYESIFVQV 126

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
                 +  D I  + +    + + + + +   ++A +F   +               + 
Sbjct: 127 LKEKSLSIFDSIIVYTADLFQLLMKHVIEVFIFLVAYYFALLETRKSRYWFFQYVPKKYR 186

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-G 256
             W+     + ++          +     L+L + + +      +    I A   ++P  
Sbjct: 187 QEWQSHFAKIMQLFHYFLFVEFQLFTITLLILCAGFMILQFEQAIIKAFIVAFADVLPFF 246

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           G  +    +SIY    GN F    + L       +  +     L    ++L    TFF  
Sbjct: 247 GIGVFLVPMSIYFYFNGNTFLCVAILLLYLFVQ-LTRQLADSMLWSNTLQLRTFHTFFIS 305

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
              +   G  G+ + P+ + L   + + SI  
Sbjct: 306 AASILLFGFYGILLSPIFLFLAVKLKENSIFE 337


>gi|301326480|ref|ZP_07219829.1| putative AI-2 transport protein TqsA [Escherichia coli MS 78-1]
 gi|300846834|gb|EFK74594.1| putative AI-2 transport protein TqsA [Escherichia coli MS 78-1]
          Length = 301

 Score = 52.5 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 42/315 (13%), Positives = 98/315 (31%), Gaps = 22/315 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ VM + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 126 HYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKFQQMMAR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G++   +  IP  G+ ++       +L+    + A  +     +   +    L P ++G
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMG 285

Query: 303 GPIKLPFLPTFFGLV 317
             + L  L  F  L+
Sbjct: 286 RGLGLSTLVVFLSLI 300


>gi|257439067|ref|ZP_05614822.1| conserved hypothetical protein [Faecalibacterium prausnitzii
           A2-165]
 gi|257198445|gb|EEU96729.1| conserved hypothetical protein [Faecalibacterium prausnitzii
           A2-165]
          Length = 379

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 53/332 (15%), Positives = 116/332 (34%), Gaps = 28/332 (8%)

Query: 13  RWMIMFIILVSLYF--------------LKGFFAPVLSALIIG----FTSWPIYSSFISK 54
           +++++ ++ V+L+               L     P+L+  I+          +       
Sbjct: 7   QYLLITVVGVTLFVALLRLSSVLTFAAQLVDLVLPILAGGILALFINVPMTGLEKRLKRL 66

Query: 55  KEESSTFLA--VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLS 111
             ++    +   +  +S     +  +L L     L + ELV        Q    +PRW +
Sbjct: 67  FCKAKKQPSDKALHLLSFFITLLGVVLVLVLALTLLIPELVQSFHSLYVQIEANIPRWTA 126

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
            +             L   + +         T+ ID +   A       ++  ++  F +
Sbjct: 127 YLSAQDADMGWLMSWL---EGIDWEQLLHRVTDTIDTVLVNAVGAVSATVNIVVTASFAL 183

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF----LGMTIIAIGEGL 227
           I   +      S+     +L                 ++ R +F     G    A+  G+
Sbjct: 184 IISVYMSVGSESLCHHARTLVCAYLKPSHSAWLLKFCRLFRQSFANFLTGQCSEAVILGV 243

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
           ++  A+ +  +P    +G++TAI A+IP    +    VS++L++  +   A    +    
Sbjct: 244 LMALAFSVFKIPYGSLVGMLTAICAIIPYVGALISCVVSVFLVLLVDPVLAVRCLIVYLA 303

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
             FI ++ + P +VG  + L  L T    + G
Sbjct: 304 VQFIENQFIYPRVVGKSVGLSPLYTLVAAMIG 335


>gi|16769548|gb|AAL28993.1| LD38235p [Drosophila melanogaster]
          Length = 588

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 75/212 (35%), Gaps = 6/212 (2%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           I       G   +++ L +I    ALF+           L       + +   KI+  + 
Sbjct: 374 ILSLVLSGGQACIEFILDMIVFFTALFYLLSSSQEKYAPLQITKYLGYSSSGIKIADALE 433

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSI 267
             I    + M   +   GL     + + G         + A++A  P  G+        +
Sbjct: 434 NSITVVLVSMFRCSTFTGLFTWLVHTVFGARIVFLPSALAAMLAAAPFLGSYWCAVPAFL 493

Query: 268 YLLIKGNIFNA-TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
            L +  + F A   LFL         +  +   L GG            + GG+  +G  
Sbjct: 494 ELWLAQDRFYAGLILFLLQFFVPSSFETAIYADLKGG----HPYLNGLAIAGGMYWIGWQ 549

Query: 327 GLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           G   GP+++     +++ + +A++ ++E  +S
Sbjct: 550 GAIFGPLMLCFFIGLFEVATLAMRSHQEPRNS 581


>gi|300717354|ref|YP_003742157.1| hypothetical protein EbC_27790 [Erwinia billingiae Eb661]
 gi|299063190|emb|CAX60310.1| putative membrane protein [Erwinia billingiae Eb661]
          Length = 336

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/343 (12%), Positives = 117/343 (34%), Gaps = 23/343 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +       +G+     + ++L+ L+        VL AL +     P+ S    ++     
Sbjct: 6   LDSFTPFARGLFLLACLTLVLIGLHLAAPLINQVLLALFLAIMLDPLISRLEKRRVPR-- 63

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              +I+++ V+ + ++ ++ +         +L+              + L+ +PG M   
Sbjct: 64  ---IISSLLVIMILLLLIVIIIMSLSAATPDLLQLSRQMPALVAERLQTLAHLPGQMGIV 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             + + L+              +  + FI    S    +   + +  + ++  L+     
Sbjct: 121 FTYEEMLNLID----------GSAIVRFIATQLSLIPGMLSWWLMVFLMLLFMLYEL--- 167

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              + +      E     +      I   ++ +     T+  +  GL++ +A  L G+  
Sbjct: 168 --PMFKTFLRAKERHSRLFTALEEGIQSVIVYAQVK--TLTGLLGGLIVWAAAHLLGLKL 223

Query: 241 HVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               G++  I   +P  G+ ++     + + I  +   +     +  +    +   L P 
Sbjct: 224 AFLWGLLMFIFNYVPVLGSFLAAIPPVVQIFILSDTQTSLLTVGFFVVLNLFLSSVLEPL 283

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           ++G  + L         +     +G+ G  +   L  L+  +W
Sbjct: 284 MLGRRLNLSLTVQLLSFLFWQSLLGITGAILAIPLTFLLTRVW 326


>gi|297621135|ref|YP_003709272.1| hypothetical protein wcw_0904 [Waddlia chondrophila WSU 86-1044]
 gi|297376436|gb|ADI38266.1| putative membrane protein [Waddlia chondrophila WSU 86-1044]
          Length = 340

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 55/333 (16%), Positives = 114/333 (34%), Gaps = 30/333 (9%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSA-LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           +MI+ I++    F   F   ++ +  II    W      + K       LA IA  S + 
Sbjct: 15  YMIVSIMIAGQAFFIPFLIALIISYFIIALAEW------VKKIFRLPMPLAYIAAFSGIL 68

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           +F      +       ++ L+    +  +    V   +SD             H S P  
Sbjct: 69  VF---FYIVSTIVTNNVQSLIELAPVYQKKLEEVMNAVSD-----------RFHFSKPNY 114

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +  E F   + +  I               L +IFMII  ++F+    +  +   SL 
Sbjct: 115 QDMFRE-FNFGSILGSIALMIRDVARNAGVITLYVIFMIIEYYYFHDKMKAFFKTQKSL- 172

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                   ++I+  + +  +S     T++++   ++        GV       ++   + 
Sbjct: 173 -----ESAEQIASKIARKTQSYLRLKTLMSLVTAVLSYVLMIAVGVDFAEFWALLIFFLN 227

Query: 253 MIPGGAPISFT--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            IP    I  T     + +L   + +    + +      FI+   + P ++G    L  L
Sbjct: 228 YIPTIGSIVATAFPCLLTILQFQSFWPFAIISVGLISTQFIIGNIIEPRVMGKQFNLSGL 287

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                L       G+ G+F+   ++ + ++I  
Sbjct: 288 VILVSLTISGTIWGITGMFLCVPILMITSIILN 320


>gi|325189672|emb|CCA24156.1| transmembrane protein putative [Albugo laibachii Nc14]
          Length = 725

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 73/215 (33%), Gaps = 18/215 (8%)

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           + T   D + R A  F    +D    +   II L +F                    +  
Sbjct: 207 ITTTLHDNVERLARIFLTETMDILSFVFVTIIYLTYFL-------------CTRTRASDA 253

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             +   + + I+        +++   L++   Y    V   +  G++T I+  IP    +
Sbjct: 254 GGVWSKIDRDIQRFVTLKCFLSLFVALLVTVVYVWLNVGLAILWGILTFILNWIPNVGAM 313

Query: 261 S--FTAVSIYLLIKGNIFNATCLFLWGAIELFI---VDKTLRPFLVGGPIKLPFLPTFFG 315
                 V I ++   ++ N    FL   + + +   V   + P + G  +++  +     
Sbjct: 314 VASLIPVLIIVITPSSVMNTMEKFLAVLLPMCLHAFVGNFIEPRVFGKKLEMDPVIVILS 373

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L       G++G+ +   L A   ++     +  +
Sbjct: 374 LSTWGLLWGVVGMILSVPLTAAFKIMLSHLKLWPE 408


>gi|325927304|ref|ZP_08188558.1| putative permease [Xanthomonas perforans 91-118]
 gi|325542305|gb|EGD13793.1| putative permease [Xanthomonas perforans 91-118]
          Length = 389

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/336 (12%), Positives = 109/336 (32%), Gaps = 18/336 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +    +  +L+  +    P++ A        PI                +I  +     
Sbjct: 54  VLATLAVGYTLWAAQTIILPIMLAAFFALIGNPILRGLRKLYIPRFLGALLILCLG---- 109

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               L                 V  A +    + R + D+   +  +    ++ +     
Sbjct: 110 ----LAGTVTLATQLAGPAAEWVQQAPRQMRQIARDVRDLTKPVMQANQAAENFARAAGG 165

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           +      +    +D   +   R          S++ +++  FFF   G S+ +   +L  
Sbjct: 166 EGQRGVQIVRTQMDDPYKALVR----TPKLAASVLAVVLLTFFFMVYGESLQRHAIALLP 221

Query: 194 HLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH--VALGVITAI 250
           +     +  +I   + + +    L +++I    GLV      +  +P    +  G + A+
Sbjct: 222 NRQQQRFTTEIMLDIEREVSRYVLTISVINTLVGLVFAGILSVLQIPLPEAILWGTVVAL 281

Query: 251 MAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +   P   P+    + + +         ++    +       I  + + P ++G  + + 
Sbjct: 282 LNFAPYVGPLIGVMLMLLMGFVEFRTTLSSLLPAILYLALHTIEGQVVTPIVLGRRMAIS 341

Query: 309 FLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWK 343
            L     L+      G++GL +  P+L+ +  V+ +
Sbjct: 342 PLMLILALMLFGWLWGMVGLLLAVPLLVCIKMVLSR 377


>gi|166713881|ref|ZP_02245088.1| transport protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 338

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/341 (12%), Positives = 113/341 (33%), Gaps = 18/341 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +    +  +L+  +    P++ A        PI                +I  +     
Sbjct: 3   VLATLAVGYTLWAAQTIILPIMLAAFFALIGNPILRGLRKLYIPRFLGALLILCLG---- 58

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               L       +            A Q    + R + ++   +  +    ++ +     
Sbjct: 59  ----LAGTVTLAVQLAGPAAEWAQQAPQRMRQIARDVRNLTKPVMQANQAAENFARAAGG 114

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           +      +    +D   +   R          S++ +++  FFF   G S+ +   +L  
Sbjct: 115 EGQRGVQIVRTQMDDPYKALVR----TPKLAASVLAVVLLTFFFMVYGESLQRHAIALLP 170

Query: 194 HLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH--VALGVITAI 250
           +     +  +I   + + +    L +++I    GLV     ++  +P    +  G + A+
Sbjct: 171 NRQQQRFTTEIMLDIEREVSRYVLTISVINTLVGLVFAGMLYVLKIPLPEAILWGTVVAL 230

Query: 251 MAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +   P   P+    + + +         ++    +       I  + + P ++G  + + 
Sbjct: 231 LNFAPYVGPLIGVMLMLLMGFVEFRTTLSSLLPAILYLALHTIEGQVVTPIVLGRRMAIS 290

Query: 309 FLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMA 348
            L    GL+      G++GL +  P+L+ +  V+ +  +M 
Sbjct: 291 PLMLILGLMLFGWLWGMVGLLLAVPLLVCIKMVLSRVDVMQ 331


>gi|114766358|ref|ZP_01445340.1| hypothetical protein 1100011001348_R2601_23213 [Pelagibaca
           bermudensis HTCC2601]
 gi|114541391|gb|EAU44438.1| hypothetical protein R2601_23213 [Roseovarius sp. HTCC2601]
          Length = 348

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 57/338 (16%), Positives = 109/338 (32%), Gaps = 15/338 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q      ++ +I   L+  K    PVL A+I  +  + + +    +        +++  +
Sbjct: 7   QTTYLLALLIMIGYLLHIGKPVLLPVLIAVISVYILFDVTARL-GQVPVIGLLPSILRRI 65

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+  F V L+ LF Y +              Q    +P + +++   M           
Sbjct: 66  LVLLAFTVVLVALFTYVLD----------TFTQVAAVLPSYKANLDSLMTHVAQLVGVDD 115

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
            P   K+ S TF +     FI         +     L +++         R G +    L
Sbjct: 116 EPSWAKLRSMTFDRLEIQPFIGPVILSIRGLGGTLFLVVLYASFLTA--ERAGMARKLNL 173

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
              G          +   +   I       T++ I  G +      L G+   +   ++ 
Sbjct: 174 ALEGNADAENRTIALINRINTRIGDYLSVKTVVNIILGALSYGVMLLFGIDFALFWAILI 233

Query: 249 AIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           A++  IP    +      V + L   G+   A+ + +        V   L P ++G    
Sbjct: 234 ALLNYIPYIGSLIGVIFPVLLSLAQFGSFTVASLVAVSLTAAQMFVAGYLEPRMLGRAFN 293

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L      F L       GL G  +   L A + ++  E
Sbjct: 294 LSPFVVLFALAFWSALWGLPGAVLAVPLTASLIIVMAE 331


>gi|168211565|ref|ZP_02637190.1| sporulation integral membrane protein YtvI [Clostridium perfringens
           B str. ATCC 3626]
 gi|168218043|ref|ZP_02643668.1| sporulation integral membrane protein YtvI [Clostridium perfringens
           NCTC 8239]
 gi|170710453|gb|EDT22635.1| sporulation integral membrane protein YtvI [Clostridium perfringens
           B str. ATCC 3626]
 gi|182379960|gb|EDT77439.1| sporulation integral membrane protein YtvI [Clostridium perfringens
           NCTC 8239]
          Length = 354

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 119/335 (35%), Gaps = 9/335 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF-LKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M+  ++  + I  + I++ ++   +F    +  P L A I            I K + + 
Sbjct: 1   MKNLIIKSEKISVFFILYTLIFFTFFNTLKYTLPFLLAFIFSLLLKTPTQFLIKKFKLNV 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVL-ANQHGIPVPRWLSDIPGGMW 118
              + I+T     + I+           E   L + +    N +      +   +   + 
Sbjct: 61  GLASFISTFIFFLIIIILFTLFITSLAYESSSLTNYIQEIINTNSKEFQNYFISLQNWIE 120

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY---CLSIIFMIIALF 175
            + +    L+  ++  I S   +    + F      +  ++        + +IF +++ +
Sbjct: 121 VNFIDNAVLNLIKNTLISSFKEITVLILSFGTELIQKVFLLISYLPYTFMLLIFTVLSTY 180

Query: 176 FFYRDGFSI--SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           F  ++  +I  S+ L +     +      I   + K+  +       +     ++    +
Sbjct: 181 FLSKELNTINFSKTLSNYLNSNYSNRILTILYEIKKMFLTYCFSYLFLIFISFVLTFLGF 240

Query: 234 WLAGVPS-HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
               +    +   +   +  +   G P+ +  +       GNIF+A  LF+   I +F++
Sbjct: 241 SFLNIKYALLLSVLAALLDLLPVLGMPLIYFPLIFISYNSGNIFSAISLFILY-IFIFLL 299

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            + L P L+   + +  L     +  G+   GLLG
Sbjct: 300 RQFLEPKLMSSTLGIHPLLILICIFIGLELNGLLG 334


>gi|77920680|ref|YP_358495.1| putative transport protein [Pelobacter carbinolicus DSM 2380]
 gi|77546763|gb|ABA90325.1| putative transport protein [Pelobacter carbinolicus DSM 2380]
          Length = 350

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 47/330 (14%), Positives = 114/330 (34%), Gaps = 23/330 (6%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
              +   Q  +    + I+   L   K    P L A  I   S         +     ++
Sbjct: 3   NRPLSVSQVFITLAALVIVAAGLNAGKVILVPFLLAGFIAILSASPMFWLQRR--GLPSW 60

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           LA++  +  + L  + L  L    +    E              +P + S +        
Sbjct: 61  LALLVVILTVVLAGLMLAGLIGSSVSAFSE-------------NLPLYESRLRQYADVLT 107

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            W +  +   S ++L+E F     +  +            +   +   +++ + F   + 
Sbjct: 108 TWLERKNISISGQVLTEIFDPGAAMKLVA----SLFNALTNVLANGFLVLMTVIFMLLEA 163

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +  +L ++   L P+          + ++      TII++  G ++     + GV   
Sbjct: 164 SGMPGKLRAI---LGPSKSLSGFDHFVQNVQHYMAIKTIISLITGALITLWLLVLGVDFP 220

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +  GV+  ++  +P  G+ I+     +  L++  +  A  + +   +   ++   + P  
Sbjct: 221 LLWGVLAFLLNYVPNIGSIIAAGPAVLLALVQLGLLRALLVGVGFLVVNLVMGSAVEPRF 280

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +G  + L  L  F  L+     +G +G+ +
Sbjct: 281 MGRGLGLSPLVVFLSLLFWGWLLGPVGMLL 310


>gi|225389531|ref|ZP_03759255.1| hypothetical protein CLOSTASPAR_03279 [Clostridium asparagiforme
           DSM 15981]
 gi|225044395|gb|EEG54641.1| hypothetical protein CLOSTASPAR_03279 [Clostridium asparagiforme
           DSM 15981]
          Length = 297

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/261 (13%), Positives = 77/261 (29%), Gaps = 20/261 (7%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTF-------------LAVIATVSVMCLFIVP- 77
           +P +    I F       +                        LAV   + ++   + P 
Sbjct: 43  SPFILGAAIAFVLNVPMRNIERHLPWKGKLEKLKRPAAMSLAILAVAGVLFLVTFVVAPE 102

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           ++  F      +    + V    +        + +  G +     W + L +        
Sbjct: 103 MINTFSGLQKSVPIFFAGVKNQAEELFASNPQILEYLGSVQVD--WDQILQNMAEFLKTG 160

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              + +  +      A         + +  IF I  LF            +++       
Sbjct: 161 AGSMLSTTM----SAAVSIVNGVSTFAIGFIFAIYILFQKEVLSRQFCSLMNAFLPEPAV 216

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                I+ +  +   S   G  + A+  G++   A  +  +P  + +GV+ A  A+IP  
Sbjct: 217 KRTLYIAALAERTFSSFLTGQCVEAVILGVMFFVALSILRLPYALLVGVLIAFTALIPIF 276

Query: 258 APISFTAVSIYLLIKGNIFNA 278
                  +  +L++  N  +A
Sbjct: 277 GAFVGLGIGAFLMLMVNPMDA 297


>gi|167753103|ref|ZP_02425230.1| hypothetical protein ALIPUT_01374 [Alistipes putredinis DSM 17216]
 gi|167659417|gb|EDS03547.1| hypothetical protein ALIPUT_01374 [Alistipes putredinis DSM 17216]
          Length = 368

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 56/359 (15%), Positives = 125/359 (34%), Gaps = 18/359 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPV----LSALIIGFTSWPIYSSFISKKEES--- 58
           + PQ ++R+ +   I   + FL  +F+ +    L + ++     P+ +     +      
Sbjct: 3   ITPQTLLRFTVGAAITAVVLFLMWYFSSIVIYILVSAVLAIMGRPLVARISRGRIGRWRV 62

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
             +   + T+ V+ +    +  LF   +      ++ +  +                   
Sbjct: 63  PRWCGALVTLLVIWIVFAVMCGLFVPLVTNKLYQLAHLDFSTVLTSVEEPLQRIQDYLTH 122

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
              L    +S   +L +  ++ +  + I+           + +   ++   +    FFF 
Sbjct: 123 FFSLPETQVSFKDTLILFLQSLINFDTINTAFSSVV---SLAVSSVIAFFSISFITFFFL 179

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           RD       + +L    +          V  ++   F G+   +    L +       G+
Sbjct: 180 RDDGLFYAMVTALFPDRYQQNVTHALNSVTVLLFRYFRGILAESFLLMLAVSLVMMAFGM 239

Query: 239 --PSHVALGVITAIMAMIPGGAPISFTAVS----IYLLIKGNIFNATCLFLWGAIEL--F 290
                  +G+I  +M ++P   P    AVS    I   I+G     T L + G++ +   
Sbjct: 240 RAQDAFFIGLIMGVMNVVPYAGPTIGGAVSVCMGIITPIEGMSIGHTMLVIAGSLLILKG 299

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           + D  L+P L    +K   L  F  ++      G++G+ +   L  ++ V  KE    I
Sbjct: 300 LDDFVLQPTLYSERVKAQPLEIFLVILIAGSLAGVIGMLLAIPLYTVLRVFAKEFFSQI 358


>gi|294626743|ref|ZP_06705338.1| permease family protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294664317|ref|ZP_06729683.1| permease family protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292598991|gb|EFF43133.1| permease family protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292605909|gb|EFF49194.1| permease family protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 368

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/336 (12%), Positives = 110/336 (32%), Gaps = 18/336 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +    +  +L+  +    P++ A        PI                +I  +     
Sbjct: 33  VLTTLAVGYTLWAAQTIILPIMLAAFFALIGNPILRGLRKLYIPRFLGALLILCLG---- 88

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               L                 V  A +    + R + D+   +  +    ++ +     
Sbjct: 89  ----LAGTVTLAAQLAGPAAEWVQQAPRQMRQIARDVRDLTKPVMQANQAAENFARAAGG 144

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           +      +    +D   +   R          S++ +++  FFF   G S+ +   +L  
Sbjct: 145 EGQRGVQIVRTQMDDPYKALVR----TPKLAASVLAVVLLTFFFMVYGESLQRHAIALLP 200

Query: 194 HLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH--VALGVITAI 250
           +     +  +I   + + +    L +++I    GLV     ++  +P    +  G + A+
Sbjct: 201 NRQQQRFTTEIMLDIEREVSRYVLTISVINTLVGLVFAGILYVLQIPLPEAILWGTVVAL 260

Query: 251 MAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +   P   P+    + + +         ++    +       I  + + P ++G  + + 
Sbjct: 261 LNFAPYVGPLIGVMLMLLMGFVEFRTTLSSLLPAILYLALHTIEGQVVTPIVLGRRMAIS 320

Query: 309 FLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWK 343
            L     L+      G++GL +  P+L+ +  V+ +
Sbjct: 321 PLMLILALMLFGWLWGMVGLLLAVPLLVCIKMVLSR 356


>gi|195399804|ref|XP_002058509.1| GJ14284 [Drosophila virilis]
 gi|194142069|gb|EDW58477.1| GJ14284 [Drosophila virilis]
          Length = 818

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 75/213 (35%), Gaps = 5/213 (2%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           I       G   +++ L +I    ALF+           +       + A   K++  + 
Sbjct: 602 ILSLLLSGGQACIEFILDMIVFFTALFYLLSSSQEKYAPMQITKYMGYSASGIKVADALE 661

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSI 267
             I    + M   +   GL     + + G         + A++A  P  G+        +
Sbjct: 662 NSITVVLVSMFKCSTFTGLFTWLVHTVFGARIVFLPSALAALLAAAPFLGSYWCAVPAFL 721

Query: 268 YLLIKGNIFNA-TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
            L +  + F A   LFL         +  +   + GG            + GG+  +G  
Sbjct: 722 ELWLAQDRFYAGLILFLLQFFVPSSFETAIYADIKGGG---HPYLNGLAIAGGMYWIGWQ 778

Query: 327 GLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G   GP+++     +++ + +A++ N+E   S+
Sbjct: 779 GAIFGPLMLCFFIGLFEVATLAMRTNQEPRRSS 811


>gi|332180915|gb|AEE16603.1| protein of unknown function UPF0118 [Treponema brennaborense DSM
           12168]
          Length = 357

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/331 (10%), Positives = 99/331 (29%), Gaps = 14/331 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +++FI  V    L    A V+  + +      ++   I+   +       I    +  +
Sbjct: 12  LLLLFICAVITGTLLKITASVVIPVTVAVLLAFVFQPLIAALNKRFHIPVGIGITIIFVI 71

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             V +L +        K + +      +    +   ++ I             L   +  
Sbjct: 72  LFVAMLVIGNLLFSSFKTIFALYPKYEERLTVIYETVATI-----------FKLPFDEET 120

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            +    + +      I   A     I + +  ++  + + + FF  +      +     +
Sbjct: 121 SLFENLWGQLGIRTAIQNAAVSLSNILIAFVKNLTVVSLFVIFFLAELRLFKTKAAVAFD 180

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                    I + +   +         I++  G+++        +   +  G +  I+  
Sbjct: 181 GQNSGKITLIIKDIILQVTRYISVKFFISLLTGVLVFLGTLAVHMDFPIVWGFLAFILNF 240

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF---IVDKTLRPFLVGGPIKLPFL 310
           IP    I    ++    +         +   G + +    I+   + P + G  + L   
Sbjct: 241 IPNFGSIISGLITTLFALIQFWPKPGPVVFVGFLMIAVNMILGNIVEPRIQGRNLGLSPF 300

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                L       G +G+ +   +M ++ +I
Sbjct: 301 VIIVSLSVWGWMWGFMGMLLAVPMMVILKII 331


>gi|254501601|ref|ZP_05113752.1| conserved domain protein, putative [Labrenzia alexandrii DFL-11]
 gi|222437672|gb|EEE44351.1| conserved domain protein, putative [Labrenzia alexandrii DFL-11]
          Length = 330

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 56/343 (16%), Positives = 112/343 (32%), Gaps = 33/343 (9%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +    ++ +L   K   APV  ++++G    P       +    S   A +  V  + L
Sbjct: 5   ILACLALVFALDVGKVILAPVCLSIVVGSLFGPAADRL-GRLGIPSWVSAALMVVLFILL 63

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP--GGMWASEL--WTKHLSH 129
                                         +P+  WL  +P       S+L  W    + 
Sbjct: 64  I---------------------TTAGAAFMVPLSDWLDKLPLIWAKLQSQLVSWQGLFAS 102

Query: 130 PQSLKILSETFLKTNGIDFIP----RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             SL+      +  +G   +                 +   II  + +L+FF      + 
Sbjct: 103 ISSLQEELRNAMGQSGNMQVSVDETSPVESVFYFAPTFMAQIILFLASLYFFVLTRPRVF 162

Query: 186 QQLDSLGEHLFPAYWKKIS-RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           +            Y   I+ + + K + +  L +T + +G    + +A WL GVPS +  
Sbjct: 163 RSTVDWSTPATKRYRMAIAFQRIEKRLSTYLLSITCVNVGLAAAVSAALWLIGVPSPILW 222

Query: 245 GVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           GV+  ++  +   G A +      + L I  +I       L   +      + + P ++G
Sbjct: 223 GVLAGVLNYVVYIGPAIMVLIMTGVGLSIGNSIPEILLPPLVYLLLNLFEAQFVTPTVLG 282

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
               L     F  +   +   G +G FI    +     +++ S
Sbjct: 283 RTTTLNPFLVFLTIAFWIWLWGPIGAFIAVPALLAGVTLYEIS 325


>gi|328784352|ref|XP_001121319.2| PREDICTED: transmembrane protein C9orf5-like [Apis mellifera]
          Length = 872

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 70/211 (33%), Gaps = 11/211 (5%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFS------ISQQLDSLGEHLFPAYWKKISRIVPKV 210
           G    ++ LS++     LF+             ++     +  H      +  +  + + 
Sbjct: 661 GTAVFNFVLSMVVFFTTLFYLLSSSEKTYKPIELTTIFSPISCH-STLQIEGFAVALQEA 719

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG-APISFTAVSIYL 269
           +   F     +A   G+     + L  V           I+  +P   A  +    +I L
Sbjct: 720 VIGVFTATFKLACFFGMWTWFIHNLFQVKIIYLPSTFATILGAVPFLDAYFACIPATIEL 779

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
                   A   F++  +   IV       + GG        T   + GG+  +G+ G+ 
Sbjct: 780 WFNRGPMIAILFFMFHFLPCNIVVTEFYKEIKGGG---HPYLTGLSIAGGIFCLGVEGVI 836

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISSNF 360
            GP+L+  I V    S   +    E++ S +
Sbjct: 837 FGPLLLCCIMVAINLSRRYLHSPSEEVISTY 867


>gi|295111677|emb|CBL28427.1| Predicted permease [Synergistetes bacterium SGP1]
          Length = 423

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 63/175 (36%), Gaps = 6/175 (3%)

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV---IRSTFLGMTIIAIGEGLVL 229
            L F   +   +  ++D           + +  I+  +   I S    +T+I++  GL  
Sbjct: 202 FLMFMLLEAPYVVDKIDEAFRGPSARTGETVKSILATISSQISSYLGALTLISVATGLCA 261

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKG--NIFNATCLFLWGA 286
                   V       V+T ++  IP  G+ I+     +  +++   ++     + +   
Sbjct: 262 WVILTSCNVELATGWAVLTILLNFIPTVGSIIATVPPVVMAILQSPTSLTMPLLVLVLLT 321

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                +   L P ++G  + L  +     L+      G+ G  +   + +++ +I
Sbjct: 322 AVQVSIGNILTPKIMGDRLGLSPVIILLSLLLWGVIWGIPGAILSTPIASILQII 376


>gi|259910131|ref|YP_002650487.1| Putative inner membrane protein [Erwinia pyrifoliae Ep1/96]
 gi|224965753|emb|CAX57285.1| Putative inner membrane protein [Erwinia pyrifoliae Ep1/96]
 gi|283480230|emb|CAY76146.1| putative AI-2E family transporter [Erwinia pyrifoliae DSM 12163]
          Length = 345

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/337 (14%), Positives = 116/337 (34%), Gaps = 22/337 (6%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              +++   + +IL  +        P L AL       P+ S  I +       +A+   
Sbjct: 11  QNILLKLATLVVILAGIKLSAEIVVPFLLALFFAIVINPLVSVLIRR--GVRRGMAITLV 68

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + VM L +  L+ +    +    E+  ++   +   + +                  +HL
Sbjct: 69  MVVMLLVLTLLVIMVAGSLQAFSEVYPQLQAQSAQKLSM-----------------LQHL 111

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +    L I S +  +      I   A+     F      ++ +I+ + F   +   +  +
Sbjct: 112 AARFHLNISSSSLAQRLDPGAIMDVATTMLRQFSGAMTQLVLVIMTVIFMLFEVHHLPYK 171

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L      + P           K +        +I++  G+++  A    G+   +  G++
Sbjct: 172 LRYAL--VNPQIHIAGLHKALKGVTHYLALKALISLVTGVLVWLALLALGIKFALLWGIV 229

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             ++  IP  G  I+     +  L+      A  +         ++   L P L+G  + 
Sbjct: 230 AFVLNFIPNIGPVIAGIPPVLQALLLNTPLEAGLVAALFVSIHMLLGNLLEPRLLGRGLG 289

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L  L  F  L+     +G +G+ +   L ++  ++ +
Sbjct: 290 LSSLVVFLSLIFWGWLLGPVGMLLSVPLTSVCKILME 326


>gi|307353307|ref|YP_003894358.1| hypothetical protein Mpet_1154 [Methanoplanus petrolearius DSM
           11571]
 gi|307156540|gb|ADN35920.1| protein of unknown function UPF0118 [Methanoplanus petrolearius DSM
           11571]
          Length = 349

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/337 (12%), Positives = 119/337 (35%), Gaps = 28/337 (8%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++   ++F+IL+ +     F   +L ++I+     PI          +   L+ I +V++
Sbjct: 14  LLSIALLFVILIGMKSAAYFINIMLISVILTLLGIPIMKRL------NKAGLSDILSVTI 67

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +  +  +  F + + E   +                ++S +P   +        L   
Sbjct: 68  IIIIYIVCILGFVFLIYESLYV----------------FISRLPEYEYLLTERLSELLDI 111

Query: 131 QSLKILSETFLKTNGI---DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            +   +S   + +      + I +             + + F+++   F   +   +  +
Sbjct: 112 LARFNISGDMVASVLKPDWNAISKMLLEVVAGGSMLAMDLFFILVITCFALLEVHKMPGR 171

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           ++ +      +   +  +++   I    +  T   +  G   G   ++ G+   V  G++
Sbjct: 172 IEKVYGE--GSGKVENVKVIISNIIKWLVVKTKTNVVLGASFGGMLYILGIDMAVFWGLM 229

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             I++ IP  G  I          ++  ++ A  + +   I   +V+  +         +
Sbjct: 230 AIILSYIPYVGLIIVSIPAIFLAWLQLGVWGAVVVIVGICIINAVVENFVFSKFAADSFQ 289

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +P L     ++     +G +GLF+      +I  + +
Sbjct: 290 IPPLIVIVTIILWSWILGPVGLFLSVPFTVIIIALLQ 326


>gi|251833005|ref|YP_001542366.2| hypothetical protein Dshi_4175 [Dinoroseobacter shibae DFL 12]
 gi|251736469|gb|ABV95885.2| protein of unknown function UPF0118 [Dinoroseobacter shibae DFL 12]
          Length = 339

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 69/187 (36%), Gaps = 10/187 (5%)

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
            +   +   +  LFFF          L     +      ++  R   + +   F  +T++
Sbjct: 149 GFAAQVFIFVGVLFFF---------VLTRSELYAGTGPMEQRFRRADRAVARYFAAVTLV 199

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATC 280
            IG G+V       AGV   V  G+  A++  I   G  +    ++I  L++ +   A  
Sbjct: 200 NIGLGVVTAMVLTAAGVNYAVLWGLAAALLNFILYLGPMMIIAGLTIAGLVQFSGAQAFL 259

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
                 +        + P +VG  + +  L  F  +V G+   G +G  +   ++    V
Sbjct: 260 PPFLFLLLNLTEANFVTPLVVGKRLAMNPLLIFTAIVFGLWLWGPVGAIVALPVLLWAGV 319

Query: 341 IWKESIM 347
           + + S+ 
Sbjct: 320 VMRPSLA 326


>gi|213854882|ref|ZP_03383122.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 71

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 28/56 (50%)

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
               LP L    G++GG+   G++GLFIGPVL+A+   ++   +  +     +   
Sbjct: 1   MGADLPLLLILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEVPAPTNEPEE 56


>gi|308502077|ref|XP_003113223.1| hypothetical protein CRE_25163 [Caenorhabditis remanei]
 gi|308265524|gb|EFP09477.1| hypothetical protein CRE_25163 [Caenorhabditis remanei]
          Length = 832

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 77/237 (32%), Gaps = 15/237 (6%)

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF---- 182
           ++      +     + ++ I         FG+  L+  + +I  +  +++          
Sbjct: 584 IAQSIGSILAVNVTIFSSLIASFAGIILSFGLDLLNTFIELIVFLTMVYYLLSASRNRWL 643

Query: 183 -----SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
                S    + +  +         I+  +   I   F+    +A+  GL     + L  
Sbjct: 644 PLQWASDLSAVTATEDSTAVPVQHHITAAIEHAIFGVFILSAKMAVFYGLYTYFVHSLFD 703

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKT 295
           +       +   + A IP   P       I  L   +G    A    L     +   D T
Sbjct: 704 LNIVFVPSMAATLFAAIPIMPPYIVAVFGIVELWLVRGEGAAALVFALASFAPVMFADAT 763

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
               + G         T   ++GG+  +GL G  IGP+++ L  V+    +  +K +
Sbjct: 764 FYKEVKGS----HPYVTGLAIIGGMYWLGLQGAIIGPIILCLCLVLVNVYLQHVKPS 816


>gi|323143756|ref|ZP_08078424.1| hypothetical protein HMPREF9444_01056 [Succinatimonas hippei YIT
           12066]
 gi|322416469|gb|EFY07135.1| hypothetical protein HMPREF9444_01056 [Succinatimonas hippei YIT
           12066]
          Length = 393

 Score = 51.8 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 47/351 (13%), Positives = 109/351 (31%), Gaps = 32/351 (9%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM------CLFIVPLLF---- 80
             P++ AL + +        F+          A I     +       + +VP +     
Sbjct: 39  VGPLVVALCLAYCLDGAVCFFMRHLHVGRRLSASIVMCLFIGAALLALILVVPQIINQGI 98

Query: 81  -----LFYYGMLEMKELVSKVVLANQHGIPVPR-----------WLSDIPGGMWASELWT 124
                +   G    + + ++   +++  + V             ++S +P  + +     
Sbjct: 99  SFYNIILSMGADVSQAISAEAAHSDEFVMSVKDIDLLITQHIMNFVSTLPDPIPSMVAEN 158

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             LS   S++      L       +             + + +I + I  F    + +++
Sbjct: 159 TVLSALTSIRSQ----LMKATAVLMRTQLVPSVFNAFSWLIYLIIVPIFTFLMLANKYAL 214

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +++ +          K+    +   I     G  +  I   +    A+ + G+     L
Sbjct: 215 QKRVLTYILPNRQNIIKEFWPSINSQIAGYIRGKIVHIIVIAIANTLAFKIMGLNYGTLL 274

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVG 302
           GV   +  ++P  GA +    V +  L++          L   + + ++D   L P L  
Sbjct: 275 GVGVGLSVVVPYVGAVLIGVPVILVALLQFGFSMTLAWVLGVYVIIQLLDSNVLTPMLFS 334

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             + L        ++      G  G+F    L  LI  I      A  + +
Sbjct: 335 KALNLDAFSILAAILIFGGLWGFWGVFFAIPLATLIKTIISRWPSADADPQ 385


>gi|168214835|ref|ZP_02640460.1| sporulation integral membrane protein YtvI [Clostridium perfringens
           CPE str. F4969]
 gi|170713727|gb|EDT25909.1| sporulation integral membrane protein YtvI [Clostridium perfringens
           CPE str. F4969]
          Length = 354

 Score = 51.8 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 119/335 (35%), Gaps = 9/335 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF-LKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M+  ++  + I  + I++ ++   +F    +  P L A I            I K + + 
Sbjct: 1   MKNLIIKSEKISVFFILYTLIFFTFFNTLKYTLPFLLAFIFSLLLKTPTQFLIKKFKLNV 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVL-ANQHGIPVPRWLSDIPGGMW 118
              + I+T     + I+           E   L + +    N +      +   +   + 
Sbjct: 61  GLASFISTFIFFLIIIILFTLFITSLAYESSSLTNYIQEIINTNSKEFQNYFISLQNWIE 120

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY---CLSIIFMIIALF 175
            + +    L+  ++  I S   +    + F      +  ++        + +IF +++ +
Sbjct: 121 VNFIDNAVLNLIKNTLISSFKEITVLILSFGTELIQKVFLLISYLPYTFMLLIFTVLSTY 180

Query: 176 FFYRDGFSI--SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           F  ++  +I  S+ L +     +      I   + K+  +       +     ++    +
Sbjct: 181 FLSKELNTINFSKTLSNYLNSNYSNRILTILYEIKKMFLTYCFSYLFLIFISFVLTFLGF 240

Query: 234 WLAGVPS-HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
               +    +   +   +  +   G P+ +  +       GNIF+A  LF+   I +F++
Sbjct: 241 SFLNIKYALLLSVLAALLDLLPVLGMPLIYFPLIFISYNSGNIFSAISLFILY-IFIFLL 299

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            + L P L+   + +  L     +  G+   GLLG
Sbjct: 300 RQFLEPKLISSTLGIHPLLILICIFIGLELNGLLG 334


>gi|134100754|ref|YP_001106415.1| hypothetical protein SACE_4221 [Saccharopolyspora erythraea NRRL
           2338]
 gi|291008322|ref|ZP_06566295.1| hypothetical protein SeryN2_27706 [Saccharopolyspora erythraea NRRL
           2338]
 gi|133913377|emb|CAM03490.1| hypothetical protein SACE_4221 [Saccharopolyspora erythraea NRRL
           2338]
          Length = 361

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/315 (14%), Positives = 101/315 (32%), Gaps = 21/315 (6%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
            AP   AL+I   + P+    + K      +LA  A V ++   ++    +    +  + 
Sbjct: 43  IAPTFLALVIVIATNPVPVWLVGK--GVPRWLATAALVVLVYAVLITFAVVVLLSIARLA 100

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            ++ +                            T  L+         +          + 
Sbjct: 101 TILPQYASR----------------ADALLAGLTHELARFGIGPEQVKNAAGKVDFGKLT 144

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                          +++F++  L F   +  ++  ++  + +        +  R     
Sbjct: 145 GVVGSLLSGVASVGTNLVFLLALLLFISVETGAVGTRMAMVAD--GHPEAARALREFTLG 202

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
            RS  +  T+      ++   A  L GVP  +  G++  +   IP  G  +     ++  
Sbjct: 203 TRSYLVVSTVFGGIVAVLDVIALLLLGVPLPILWGLLAFVTNYIPTIGFVLGVIPPALLA 262

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           L++G    A  + +   +  F++   ++P  VG  + L    T   LV     +G LG  
Sbjct: 263 LLQGGWKLAVTVVVVYCVLNFVIQSIIQPRFVGDAVGLSVTVTLLSLVFWTWVIGALGAI 322

Query: 330 IGPVLMALIAVIWKE 344
           +   L  L   +  +
Sbjct: 323 LAIPLTLLAKAVLVD 337


>gi|195452970|ref|XP_002073580.1| GK13068 [Drosophila willistoni]
 gi|194169665|gb|EDW84566.1| GK13068 [Drosophila willistoni]
          Length = 820

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 73/210 (34%), Gaps = 5/210 (2%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           I       G   +++ L +I    ALF+           L       +     KI+  + 
Sbjct: 603 ILSLLLSGGQACVEFILDMIVFFTALFYLLSSSQDKYAPLQITKYLGYSTSGIKIADALE 662

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSI 267
             I    + M   +I  GL     + + G         + A++A  P  G+        +
Sbjct: 663 NSITVVLVSMFKCSIFTGLFTWLVHTVFGARIVFLPSALAAMLAAAPFLGSYWCAVPAFL 722

Query: 268 YLLIKGNIFNA-TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
            L +  + F A   LFL         +  +   L GG            + GG+  +G  
Sbjct: 723 ELWLAQDRFYAGLTLFLMQFFVPSAFETAIYADLKGGG---HPYLNGLAIAGGMYWIGWQ 779

Query: 327 GLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           G   GP+++     +++ + +A++ N+E  
Sbjct: 780 GAIFGPLMLCFFIGLFEVATLAMRNNQENP 809


>gi|218247456|ref|YP_002372827.1| hypothetical protein PCC8801_2670 [Cyanothece sp. PCC 8801]
 gi|218167934|gb|ACK66671.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 8801]
          Length = 345

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 94/302 (31%), Gaps = 7/302 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + I    L+ ++     V +A+I       + +  ++ +         +A +  +   + 
Sbjct: 12  LVISGYILWEIRQLLLLVFTAIIFATALNRLINRLLTWQFRGVKLTRNLAILISLIGILF 71

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             +  F   +    E    ++          R    +     +   W       + L   
Sbjct: 72  LTILFFLLIVPPFLEQFDNLIKLLPTIWERLRATVILLVQKQSHFDWLPPPPSLKDLIEQ 131

Query: 137 SETFLKTNGIDFIPRFASRFGMIF-LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           S+        +F   F++    I  L + L +  M++     YR G         L    
Sbjct: 132 SQPLFTQIFKNFFAFFSNSVVAIIQLLFVLVLTVMMVINPQLYRKG------FLKLFPSF 185

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +I  +    + +   G+ I  +   ++ G   W+  V   +   ++  ++  IP
Sbjct: 186 YRHRVDEIFTLSEIALGNWLTGIMINCLFIAILSGVGLWILQVKLVLVHALLAGLLNFIP 245

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P +     I + +    +    + +W  I   I    L P ++   + L    T   
Sbjct: 246 NIGPAASVVFPIMVAVLDEPWKIWVILIWYFIIQNIESYWLTPTVMAKQVSLLPAITLMA 305

Query: 316 LV 317
            +
Sbjct: 306 QI 307


>gi|213622260|ref|ZP_03375043.1| hypothetical protein SentesTyp_33998 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 157

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 54/156 (34%), Gaps = 6/156 (3%)

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +++      L    W ++++ +   IR   L M ++    G+     + L G+   + L
Sbjct: 5   VRRVLPRNRGLAGQVWNEMNQQITNYIRGKVLEMVVV----GVATWLGFLLFGLNYSLLL 60

Query: 245 GVITAIMAMIP-GGAPISFTAV-SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            V+     +IP  GA +    V  + L   G        F    I   +    L P L  
Sbjct: 61  AVLVGFSVLIPYIGAFVVTIPVVGVALFQFGLGTEFWSCFAVYLIIQALDGNLLVPVLFS 120

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             + L  L     +V      G  G+F    L  LI
Sbjct: 121 EAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLI 156


>gi|313894745|ref|ZP_07828306.1| putative membrane protein [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312976654|gb|EFR42108.1| putative membrane protein [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 362

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/309 (10%), Positives = 93/309 (30%), Gaps = 15/309 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             ++   L      F  V  A ++         +            +   ++S+      
Sbjct: 21  ALVLRSILQVFYPIFVGVAFAFVLSI----PQEALEKILGRHRQMRSHARSISIALSLTG 76

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL-----SHPQ 131
            ++ LF +    + + +  +      G  +P  L ++   +       K++         
Sbjct: 77  GIIMLFLFANAFIPQFIQTLRG---FGTALPEALHEVAAALSGVPTLQKYVVELESVDWN 133

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD---GFSISQQL 188
            +    + +L +   + +                + + +I+ ++F          + Q L
Sbjct: 134 QMMQRVQEYLASGQTEAVYSAVHTTAEFVTMMVETFVGIILGIYFLGAKEMLTRQMRQML 193

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +        +   I  +  +   +   G  + +    + L +   L G+     +  I 
Sbjct: 194 YAFCTRKNADHIAHIGGVFRQKFYAFVCGQMLDSFIFMMGLFTGMILFGISHAAMVSAIV 253

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
               +IP    +   A+    +   +   A    +   +   I    + P ++G  + LP
Sbjct: 254 VFTGLIPMVGGVIGGAIGAVFIFVESPTQALIFIILLIVLHQIDSNFIYPRIMGRSLGLP 313

Query: 309 FLPTFFGLV 317
            + +F  ++
Sbjct: 314 EVWSFIAII 322


>gi|296087601|emb|CBI34857.3| unnamed protein product [Vitis vinifera]
          Length = 651

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 76/212 (35%), Gaps = 12/212 (5%)

Query: 137 SETFLKTNGIDFIPRFASRFGMI---FLDYCLSIIFMIIALFFFYR-DGFSISQQLDSLG 192
           S T + T G + +   A          L++   ++  +  L++    D   +   +  + 
Sbjct: 422 SGTMVLTGGANMLFSMAVLIVSGAAELLNFISQLMVFLWLLYYLITTDSGGVMDHVLGML 481

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L  +   + ++++   + S  L    +A+ +G      +    +        +  + +
Sbjct: 482 P-LSKSTRDRCAQVLDNAVSSVLLASAKVALFQGCFTYLLFRFYCIHFLYMSTFLAVMSS 540

Query: 253 MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++P   A +S    +  L ++     A  L     I L      ++  + G         
Sbjct: 541 VLPITPAWLSSIPAAAQLAMEAKYIEAISLTAIHLILLDYGTTAIQDEIPGQNA----YL 596

Query: 312 TFFGLVGGVRTMG--LLGLFIGPVLMALIAVI 341
           T   ++GG+      L G  +GP+LM ++  +
Sbjct: 597 TGLSILGGIALFPSVLEGAIMGPLLMTVMIAL 628


>gi|168207750|ref|ZP_02633755.1| sporulation integral membrane protein YtvI [Clostridium perfringens
           E str. JGS1987]
 gi|170660939|gb|EDT13622.1| sporulation integral membrane protein YtvI [Clostridium perfringens
           E str. JGS1987]
          Length = 354

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 119/335 (35%), Gaps = 9/335 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF-LKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M+  ++  + I  + I++ ++   +F    +  P L A I            I K + + 
Sbjct: 1   MKNLIIKSEKISVFFILYTLIFFTFFNTLKYTLPFLLAFIFSLLLKTPTQFLIKKFKLNV 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVL-ANQHGIPVPRWLSDIPGGMW 118
              + I+T     + I+           E   L + +    N +      +   +   + 
Sbjct: 61  GLASFISTFIFFLIIIILFTLFITSLAYESSSLTNYIQEIINTNSKEFQNYFISLQNWIE 120

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY---CLSIIFMIIALF 175
            + +    L+  ++  I S   +    + F      +  ++        + +IF +++ +
Sbjct: 121 VNFIDNAILNLIKNTLISSFKEITVLILSFGTELIQKVFLLISYLPYTFMLLIFTVLSTY 180

Query: 176 FFYRDGFSI--SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           F  ++  +I  S+ L +     +      I   + K+  +       +     ++    +
Sbjct: 181 FLSKELNTINFSKTLSNYLNSNYSNRILTILYEIKKMFLTYCFSYLFLIFISFVLTFLGF 240

Query: 234 WLAGVPS-HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
               +    +   +   +  +   G P+ +  +       GNIF+A  LF+   I +F++
Sbjct: 241 SFLNIKYALLLSVLAALLDLLPVLGMPLIYFPLIFISYNSGNIFSAISLFILY-IFIFLL 299

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            + L P L+   + +  L     +  G+   GLLG
Sbjct: 300 RQFLEPKLMASTLGIHPLLILICIFIGLELNGLLG 334


>gi|94969261|ref|YP_591309.1| putative transporter [Candidatus Koribacter versatilis Ellin345]
 gi|94551311|gb|ABF41235.1| putative transporter [Candidatus Koribacter versatilis Ellin345]
          Length = 182

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 49/143 (34%), Gaps = 2/143 (1%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGA 258
           ++  RI  + ++  FL   + ++    +      L GVP         AI   IP  GG 
Sbjct: 2   RQQLRITGRALKRWFLAQCLDSLIVAAMWWLGLALLGVPWAPLWAFFAAIFQFIPHIGGV 61

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
                 +   LL          +    A+ + +    ++P ++    ++P   +    + 
Sbjct: 62  LTLIGPLGATLLEGNGWEGTAYVLGLYAVVMVLDGFIVQPMILKRTARVPVWASIVVPLV 121

Query: 319 GVRTMGLLGLFIGPVLMALIAVI 341
                   G+ +   ++A+   +
Sbjct: 122 MGYFFQFWGILLSAPMLAVFFAL 144


>gi|221369354|ref|YP_002520450.1| hypothetical protein RSKD131_3517 [Rhodobacter sphaeroides KD131]
 gi|221162406|gb|ACM03377.1| Hypothetical Protein RSKD131_3517 [Rhodobacter sphaeroides KD131]
          Length = 385

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 79/213 (37%), Gaps = 5/213 (2%)

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            + + +  +        ++   A++ G +      +++ ++   F F    +   + L+ 
Sbjct: 130 DAEEAVLSSLRAVEISGYLRTLAAQAGTLM---QATVLVILFVGFLFAERVWFPVKLLNL 186

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
            G        ++I   +   +    L  T+++   GL++       G+     LG++T I
Sbjct: 187 FGNPDRARRVEEIVSSIMHRVNRYLLVKTLVSAITGLLVWGVAMAFGLDLAAPLGMLTFI 246

Query: 251 MAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +  IP    I      V +  +   ++  A  +     +  FI    L P L+G  ++L 
Sbjct: 247 LNFIPSLGSIVATLLIVLVTFVQTVDVSTALSVLALVGVIQFICGNILDPMLMGRALQLS 306

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                  L       G+ G+F+   +M  + ++
Sbjct: 307 SFGIIISLAFWGAIWGIPGMFLSVPIMVGLMIV 339


>gi|317492338|ref|ZP_07950767.1| transporter tqsA [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919677|gb|EFV41007.1| transporter tqsA [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 348

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 85/227 (37%), Gaps = 3/227 (1%)

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +H++   +L               +   A+R          S+  +++ + F   +   +
Sbjct: 109 QHIAERLNLNFSPVELANHFDPGVVMNMATRIVTQLSGAMSSLFLLLMTVVFMLMEVPHL 168

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             +L     +   A    I R +  V +   L    I++  G+V+     L G+   +  
Sbjct: 169 PYKLRKSLSN-ADAGMGSIQRALDGVTQYLALKT-GISLITGVVVWLMLHLMGIRFAMMW 226

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           GV+  ++  IP  G+ I+     I  L+  +  +A  +         +    L P ++G 
Sbjct: 227 GVLAFVLNYIPNIGSVIAAIPPVIQALLFNSFGDAVMVASGYIAINMVFGNILEPRVMGR 286

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            + L  L  F  L+     +G +G+ +   L  ++ ++ + + +  +
Sbjct: 287 GLGLSTLVVFLSLIFWGWLLGPIGMLLSVPLTIVVKILLELTPVGSR 333


>gi|28572503|ref|NP_789283.1| hypothetical protein TW349 [Tropheryma whipplei TW08/27]
 gi|28410635|emb|CAD67021.1| conserved hypothetical integral membrane protein [Tropheryma
           whipplei TW08/27]
          Length = 359

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 58/178 (32%), Gaps = 1/178 (0%)

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            N +  I       G+  ++    I+ ++I   +F     +I      L       + K 
Sbjct: 151 QNNVTTITGSVVNIGIGIVNTVTGIVIVLILTIYFSATLPTIKATGYKLVPASRREFVKD 210

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
               V   +     G  ++A   G +    + +      + +  I  I +MIP  G   S
Sbjct: 211 TLEDVLSSVGRYTAGQFLLASINGTLTLLIFSILQFKYPILMAFIAFIGSMIPLVGTISS 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
              +S   L     +    + ++  + + +    + P ++   + +P        + G
Sbjct: 271 SALISGITLFSAQGWTVWAVVIYYLVYMNVEAYVISPKIMKKAVSVPGSLVVISALAG 328


>gi|167645921|ref|YP_001683584.1| hypothetical protein Caul_1957 [Caulobacter sp. K31]
 gi|167348351|gb|ABZ71086.1| protein of unknown function UPF0118 [Caulobacter sp. K31]
          Length = 354

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/328 (12%), Positives = 100/328 (30%), Gaps = 25/328 (7%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +   +  LY  +    P+  A ++      +    +     +     ++   +V+   ++
Sbjct: 15  VAAAMALLYVFRALLWPLAMAFVLAILVNALVRVIVRVWPSAGRLTVMVLASAVVAGLLM 74

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             + +   G  E+   + ++                      A  L        Q +K+ 
Sbjct: 75  VGVVVVVSGAAELAGQLPQL----------------------AVRLNALFERAGQLVKLE 112

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
             +         +P  A+R           ++  ++ L F       I  ++  +     
Sbjct: 113 GVSLTSLASGLDLPSLAARVLGSLQGAVSGMLLTVLFLIFILTSRHLIRNKMQIIASFRR 172

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
           P     +     K + +     T+  +      G+   LAG+ + +   +   +++ IP 
Sbjct: 173 PTGMPSVLERTVKGVETYVWIQTVTGLMIAAASGAIMALAGLDNALFWTLALFMLSYIPV 232

Query: 257 GAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
                         LL    ++ A  +FL      F+V   + P +      +       
Sbjct: 233 LGVGVGSLAPALFALLQFPTVWPALAIFLGIQAVSFLVGNLVLPKMQAASQNIDPTIGLL 292

Query: 315 GLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            +       G+ G F+  P+ +AL+  +
Sbjct: 293 AVGVWSVLWGIPGAFLAIPLTLALMLQL 320


>gi|88808466|ref|ZP_01123976.1| hypothetical protein WH7805_02212 [Synechococcus sp. WH 7805]
 gi|88787454|gb|EAR18611.1| hypothetical protein WH7805_02212 [Synechococcus sp. WH 7805]
          Length = 359

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 68/205 (33%), Gaps = 4/205 (1%)

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           T  +  +   A   G   +     I   ++             Q + S          + 
Sbjct: 145 TGSLKGVLGLAGNVGNGLVQLLFVIAVTLMVSIQPMAYREVGIQLVPSFYRR----RARS 200

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           I     + + S  +G+ I +    ++ G    L GV   VA  ++  ++ +IP   P   
Sbjct: 201 ILLQCGEALSSWMIGVLISSCCVAVLAGIGLTLLGVKLVVANALLAGLLNVIPNVGPTLS 260

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
           T   + + +    + A  +     +   +    + P ++   + L    T          
Sbjct: 261 TVFPMSVALVDAPWKALAVLALYVVVQNVESYVITPSVMQHQVNLLPGLTLTAQFIFTVL 320

Query: 323 MGLLGLFIGPVLMALIAVIWKESIM 347
            G LGL +   L  ++ VI +E ++
Sbjct: 321 FGPLGLLMALPLAVVLQVIIREIVI 345


>gi|224061256|ref|XP_002300393.1| predicted protein [Populus trichocarpa]
 gi|222847651|gb|EEE85198.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/248 (12%), Positives = 78/248 (31%), Gaps = 18/248 (7%)

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
            +   E+  +  +   S+       + + G   I   A        ++    +     L+
Sbjct: 419 AVQGMEVSQRVFASSASVLGGGAKLMLSIGNSIISGAAE-----VFNFVSQSVIFFWVLY 473

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           +                  +      +   ++ K I    L    IA  +G +    + L
Sbjct: 474 YLITSESGGVTNQVMGMLPIPKPARIRCVEVLDKAISGVLLATAEIAFFQGCLTWLLFRL 533

Query: 236 AGVPSHVALGVITAIMAMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
             +       ++     + P   P+ +    ++ L+++G    A  L +   +   ++D 
Sbjct: 534 YDIHFLYVSTILAIFSPLFPIFPPMFATIPAAVQLVMEGRYILAVSLSIIHIV---LMDY 590

Query: 295 TLRPFLVGGPIKLP---FLPTFFGLVGGVRTM--GLLGLFIGPVLMALIAVIWKESIMAI 349
                       +P      T   ++GG+      + G  +GP++  ++  +    +  +
Sbjct: 591 ----GATEIQEDIPGYNEYLTGLSIIGGMTLFPSAIEGAIMGPLITTVVIGLKDLYVEFV 646

Query: 350 KENKEKIS 357
            E  +K S
Sbjct: 647 LEEPKKTS 654


>gi|153855827|ref|ZP_01996813.1| hypothetical protein DORLON_02834 [Dorea longicatena DSM 13814]
 gi|149751868|gb|EDM61799.1| hypothetical protein DORLON_02834 [Dorea longicatena DSM 13814]
          Length = 447

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/347 (13%), Positives = 102/347 (29%), Gaps = 45/347 (12%)

Query: 9   QGIMRWMIMFIILVSLYF-----------------LKGFFAPVLSALIIGFTSWPIYSSF 51
           Q   R M  F+++V+                    +     PVL    I +   PI  S 
Sbjct: 25  QQFNRGMTYFLVIVACILVYFAMLRVEAISNTLSKILSILKPVLYGCGIAYLLNPIVKSV 84

Query: 52  ISKK----------EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ 101
            +            E++      I  +  + + I  +  L    + E+   +  ++    
Sbjct: 85  DAYLVPVLEKHMKKEKAKKVSRSIGVIVALVVLITVVSTLINMLIPELITSIRNLIF--T 142

Query: 102 HGIPVPRWLSDIPGGMWASELWTKHL-SHPQSLKILSETFLKTNGIDFIPRFASRFGMIF 160
               + + + +I          T  L +         + +++T+ +D +    +   +  
Sbjct: 143 LPAQINQLVKEINNIQLDDSTTTAVLKNAMNEASASLQKWMRTDLLDKVNEVMTHLTVGL 202

Query: 161 -------LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
                      + +I  +  LF       +   Q       +FPA    +   +      
Sbjct: 203 YTLIMEMFHAVIGVIVSVYILF----GKETFINQSKKAAYAIFPAERANLLIHIAVKTNE 258

Query: 214 TFLG----MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            F G      I +I  G++      +  +P  + + VI  +  +IP   P      S  L
Sbjct: 259 IFGGFIIGKIIDSIIIGILCFIGTSILKMPYAMLVSVIVGVTNVIPFFGPYIGAIPSAVL 318

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           +   +        ++  +        L P ++G    L        +
Sbjct: 319 IALADPMKGIYFLIFILLLQQFDGNILGPKILGNSTGLSAFWVIVSI 365


>gi|291442208|ref|ZP_06581598.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291345103|gb|EFE72059.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 293

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 58/168 (34%), Gaps = 2/168 (1%)

Query: 177 FYRDG-FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
             R G   + + L SL          +   I             + A+   +       L
Sbjct: 98  LLRRGWPRLRRALCSLLPPAKQTEVLRAWEIAVDKTSGYLYSRGLRALISAVARFIMLAL 157

Query: 236 AGVPSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
             VP  +AL V   +++  IP        A+ +     G+++ A  + ++  +     + 
Sbjct: 158 LDVPYALALAVWVGVVSQFIPVIGTYLAAAMPMLAAFAGDLWYAVVVLVFVVVYQQFENY 217

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            ++P L    + +  +  F  ++ G   +G++   I    +A +   +
Sbjct: 218 LIQPKLTSKTVDIHPVVAFGSVIAGTALLGVVDTLIAIPAVATLQTFF 265


>gi|195498606|ref|XP_002096595.1| GE24959 [Drosophila yakuba]
 gi|194182696|gb|EDW96307.1| GE24959 [Drosophila yakuba]
          Length = 818

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 75/212 (35%), Gaps = 5/212 (2%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           I       G   +++ L +I    ALF+           L       + +   KI+  + 
Sbjct: 603 ILSLVLSGGQACIEFILDMIVFFTALFYLLSSSQEKYAPLQITKYLGYSSSGIKIADALE 662

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSI 267
             I    + M   +   GL     + + G         + A++A  P  G+        +
Sbjct: 663 NSITVVLVSMFRCSTFTGLFTWLVHTVFGARIVFLPSALAAMLAAAPFLGSYWCAVPAFL 722

Query: 268 YLLIKGNIFNA-TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
            L +  + F A   LFL         +  +   L GG            + GG+  +G  
Sbjct: 723 ELWLAQDRFYAGLILFLLQFFVPSSFETAIYADLKGGG---HPYLNGLAIAGGMYWIGWQ 779

Query: 327 GLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           G   GP+++     +++ + +A++ ++E  +S
Sbjct: 780 GAIFGPLMLCFFIGLFEVATLAMRSHQEPRNS 811


>gi|309779498|ref|ZP_07674259.1| membrane protein [Ralstonia sp. 5_7_47FAA]
 gi|308921739|gb|EFP67375.1| membrane protein [Ralstonia sp. 5_7_47FAA]
          Length = 345

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 59/346 (17%), Positives = 117/346 (33%), Gaps = 28/346 (8%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLS-----ALIIGFTSWPIYSSFISKKEES 58
           TML P+         I  VS   +    A VL      A I GF  + +     ++    
Sbjct: 2   TMLPPELPPNAHTRAINAVSYVLVAAMIAAVLWLHLLPAAIAGFLVYALARKLEARLRRR 61

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
            T       ++V+C+F++  L L   G+         +    +HG  +   L+ I     
Sbjct: 62  RTLSQRAKAIAVICVFVIAALILAALGIG--------IGRLVEHGHGLEGMLTRI--ADV 111

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
              L     +   S    S T L+   +  I     +   + +D   +   M++ L    
Sbjct: 112 LDNLRESLPAAVVSYVPQSVTELRVQLVQMIKEHGHQVSTLGIDGLRASALMLVGLIL-- 169

Query: 179 RDGFSISQQLDSLGEHLFPA------YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
             G  ++       EH  P          +++     V+ +      +      + L  A
Sbjct: 170 --GAMVAWSETPDSEHHKPLAAALVSRLSRLTDAFEAVVFAQVKISALNTALAAIYLLGA 227

Query: 233 YWLAG--VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
             L G  VP   +L ++T +  +IP    +      + + +  ++  A    ++  + + 
Sbjct: 228 LPLFGQHVPYSKSLILLTFVAGLIPVAGNLISNTAIVVMSVTASLELAVASLIF-LVVVH 286

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            ++  +   ++G  I          L+      G+ G+   PVL A
Sbjct: 287 KLEYFVNARIIGSRIDARAWELILALIVMEALFGVGGVIAAPVLYA 332


>gi|307193410|gb|EFN76235.1| Transmembrane protein C9orf5 [Harpegnathos saltator]
          Length = 874

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 64/190 (33%), Gaps = 5/190 (2%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
           G   L++ LS +     LF+         + ++ L     P    + +  + + +   F 
Sbjct: 668 GSAVLNFVLSTVVFFTTLFYLLSSSDKTYKPIE-LTTTYSPISCHRFAVALQEAVIEVFA 726

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG-APISFTAVSIYLLIKGNI 275
               +A   G+     + L  V           ++  +P   A  +    ++ L      
Sbjct: 727 ATFKLASFFGMWTWFIHNLFQVKIVYLPSAFATMLGAVPFLDAYFACIPTTVELWFTRGS 786

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             A   FL+  +   IV       + GG        T   + GG+  +G+ G   GP+L+
Sbjct: 787 MIAILFFLFHFLPCNIVVTEFYKEIKGGG---HPYLTGLSIAGGIFCLGVEGAIFGPLLL 843

Query: 336 ALIAVIWKES 345
             I V    S
Sbjct: 844 CCIMVAINMS 853


>gi|124025473|ref|YP_001014589.1| permease [Prochlorococcus marinus str. NATL1A]
 gi|123960541|gb|ABM75324.1| Predicted permease [Prochlorococcus marinus str. NATL1A]
          Length = 358

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 56/350 (16%), Positives = 120/350 (34%), Gaps = 13/350 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +     +    + I ++ L+ LK       +++II      I        +       +I
Sbjct: 1   MKQTSFLSITALIISVLILWSLKEIVILFFASIIIAMALCTITGKIRDFLQIPRWGSLII 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL-WT 124
             +S++ +  + ++ +      E +EL++++  A         W   I   +  SEL + 
Sbjct: 61  TIISILLISSISIVIIIPQFTSEFQELINQIPSAASKL-----WELSIKIFLNFSELVYK 115

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
            ++ +     IL+           +    +      L    ++   II L F    G  I
Sbjct: 116 DNIPNLADKTILTNKLSMIPDGASLASTVTDSITKLLSLVSNVGIGIIQLIFILSVGLMI 175

Query: 185 SQQ-------LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
           + Q          L    +    + I       + S   G+ + +I   L+     +L G
Sbjct: 176 TLQPQSYREVAILLVPSFYRRRARTILLRCGNALSSWMSGVLLSSICVALLAAIGLYLLG 235

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           +   +A  +I  ++ +IP   P   T   + + +    + +  +     +   I    + 
Sbjct: 236 IKLVIANALIAGVLNIIPNVGPTISTIFPLSVALLDTPWKSFAVLGLYVVIQNIESYVIT 295

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           P ++   +KL    T           G LGL +   +  +I V  KE I+
Sbjct: 296 PSIMHKQVKLLPGLTITAQFIFTIIFGPLGLLLAIPMAVVIQVFVKEIII 345


>gi|222147947|ref|YP_002548904.1| hypothetical protein Avi_1260 [Agrobacterium vitis S4]
 gi|221734935|gb|ACM35898.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 366

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/332 (12%), Positives = 101/332 (30%), Gaps = 17/332 (5%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + + + + +L++      P+  A+++G           +         AV+ T ++  L 
Sbjct: 37  LFLIVAIAALHYAGTILMPLTLAVVVGLILGLAADRLEA-LGVPPMMSAVLLTTALFTLV 95

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
                 +       + EL   +    Q  +         P       L    L+      
Sbjct: 96  ----TIIANTLAGPLMELAQDIPSIGQTMMD-----RFTPYFQRFHWLHLDRLASGNGPI 146

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
            L +     NG   +   AS+     +    ++IF    + F           + S  + 
Sbjct: 147 NLDKML--ENGGGILSTVASQVTPAIVQ---TLIFFAALVLFLAGRVSIRKTLIVSFRDR 201

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                  +    +   +   F   ++I  G G       W+ G+   V  G    + + +
Sbjct: 202 ARRLSAIRSINAIETALGFYFATASVIYAGVGCCALLIAWVGGLTLPVLWGFFAFLSSFV 261

Query: 255 PGG--APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P      ++F      +L   ++       +       +V+  + P ++G  +++     
Sbjct: 262 PFLGVTAMTFALAVAGMLTHSSLLFGLLPAIAFFTVHALVENLVTPAVMGRRMEINAFGV 321

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           F  ++      G  G  +   L  +   I+ E
Sbjct: 322 FVAIIFWTWVWGAAGAMLAVPLALIGKAIFTE 353


>gi|317054498|ref|YP_004118523.1| hypothetical protein Pat9b_5811 [Pantoea sp. At-9b]
 gi|316952493|gb|ADU71967.1| protein of unknown function UPF0118 [Pantoea sp. At-9b]
          Length = 341

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/337 (14%), Positives = 117/337 (34%), Gaps = 21/337 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +IL+ L+        VL AL++     P+ S    K+      L+ +A +SV+ L IV
Sbjct: 20  LTLILIGLHLSAHLINQVLLALLLSIMLDPLVSWLEQKRIPR--ILSSLAIISVLLLVIV 77

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             +        ++      ++L+ Q  + +   L +I                   + + 
Sbjct: 78  VTIIKLTVLTPDL------ILLSRQTPLLLTTRLQEI-----------TQALDQVGIALA 120

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +  L    +  + ++ + F           + + + L F   +   +   L+       
Sbjct: 121 PDEMLAFIDVGAVVKWVTAFLTQIPGVLSWWVMVFLMLLFMLYELPLLKNALEKRAGGKS 180

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
            A +  +   +  VI       T+  I  G+++     L G+      GV+  +   IP 
Sbjct: 181 AALYHALDDGIQSVI-VYARVKTLTGIFGGVIVWGGAQLLGLKFAFFWGVLMFVFNYIPV 239

Query: 257 -GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ ++     +   I  ++  A  +  +  +    +   L P ++G  + +        
Sbjct: 240 LGSFMAAIPPVVQSYIAFDLEVALAIAGFFVLLNLTLSSVLEPLMIGKRLDMALTSQLLA 299

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            +     +G+ G  +   L  LI  +   S    +++
Sbjct: 300 FLFWQALLGITGAILAIPLTYLIKKVLLASYRQQQDS 336


>gi|195569097|ref|XP_002102548.1| GD19962 [Drosophila simulans]
 gi|194198475|gb|EDX12051.1| GD19962 [Drosophila simulans]
          Length = 818

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 75/212 (35%), Gaps = 5/212 (2%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           I       G   +++ L +I    ALF+           L       + +   KI+  + 
Sbjct: 603 ILSLVLSGGQACIEFILDMIVFFTALFYLLSSSQEKYAPLQITKYLGYSSSGIKIADALE 662

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSI 267
             I    + M   +   GL     + + G         + A++A  P  G+        +
Sbjct: 663 NSITVVLVSMFRCSTFTGLFTWLVHTVFGARIVFLPSALAAMLAAAPFLGSYWCAVPAFL 722

Query: 268 YLLIKGNIFNA-TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
            L +  + F A   LFL         +  +   L GG            + GG+  +G  
Sbjct: 723 ELWLAQDRFYAGLILFLLQFFVPSSFETAIYADLKGGG---HPYLNGLAIAGGMYWIGWQ 779

Query: 327 GLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           G   GP+++     +++ + +A++ ++E  +S
Sbjct: 780 GAIFGPLMLCFFIGLFEVATLAMRSHQEPRNS 811


>gi|71988646|ref|NP_001022687.1| hypothetical protein M01F1.4 [Caenorhabditis elegans]
 gi|60222918|emb|CAI58660.1| C. elegans protein M01F1.4b, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 807

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 68/212 (32%), Gaps = 14/212 (6%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD--------SLGEHLFPAYW 200
           +      FGM  L+  + +I  +  +++      +    L         +  +       
Sbjct: 581 LAGIILSFGMDLLNTFIEMIVFLTMVYYLLSASRTRWLPLQWASDLSAVTTADGSSAGNQ 640

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             I+  +   I   F+    +A+  GL     + L  +       +   + A IP   P 
Sbjct: 641 HHITVAIEHAIFGVFVLSAKMAVFYGLYTYFVHSLFDLNIVFVPSMAATVFAAIPIMPPY 700

Query: 261 SFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
                 I  L   +G    A    +     +   D T                T   ++G
Sbjct: 701 IVAIFGIVELWLVRGEGAAALVFTVASFAPVMFADAT----FYREVKGSHPYVTGLAIIG 756

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           G+  +GL G  IGP+++ L  V+    +  +K
Sbjct: 757 GMYWLGLQGAIIGPIVLCLCLVLVNVYLQHVK 788


>gi|71988642|ref|NP_001022686.1| hypothetical protein M01F1.4 [Caenorhabditis elegans]
 gi|14530488|emb|CAA86517.2| C. elegans protein M01F1.4a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 808

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 68/212 (32%), Gaps = 14/212 (6%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD--------SLGEHLFPAYW 200
           +      FGM  L+  + +I  +  +++      +    L         +  +       
Sbjct: 582 LAGIILSFGMDLLNTFIEMIVFLTMVYYLLSASRTRWLPLQWASDLSAVTTADGSSAGNQ 641

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             I+  +   I   F+    +A+  GL     + L  +       +   + A IP   P 
Sbjct: 642 HHITVAIEHAIFGVFVLSAKMAVFYGLYTYFVHSLFDLNIVFVPSMAATVFAAIPIMPPY 701

Query: 261 SFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
                 I  L   +G    A    +     +   D T                T   ++G
Sbjct: 702 IVAIFGIVELWLVRGEGAAALVFTVASFAPVMFADAT----FYREVKGSHPYVTGLAIIG 757

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           G+  +GL G  IGP+++ L  V+    +  +K
Sbjct: 758 GMYWLGLQGAIIGPIVLCLCLVLVNVYLQHVK 789


>gi|196229736|ref|ZP_03128600.1| protein of unknown function UPF0118 [Chthoniobacter flavus
           Ellin428]
 gi|196226062|gb|EDY20568.1| protein of unknown function UPF0118 [Chthoniobacter flavus
           Ellin428]
          Length = 494

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 62/170 (36%), Gaps = 6/170 (3%)

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
           +  P   ++S +  +        + L  +  + +   F        G   L   L I+ +
Sbjct: 209 ATTPATPFSSTIDVQSFLQGDWGRSLLPSLFQNSWKFFTKSLGGFLG--VLSVLLWIVIV 266

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI---SRIVPKVIRSTFLGMTIIAIGEGL 227
            I L++F  +  +I++            +  ++      +   + + F G  ++++  G 
Sbjct: 267 PIYLYYFLIESNNIAESWGDYLPLRASVFKDEVVSTLEEINGYLIAFFRGQLLVSMINGT 326

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIF 276
           V G    + G    + +G++   + +IP  G  + +    +  L +G   
Sbjct: 327 VTGILLVIFGHSFGILIGLMLCFLGIIPYIGISLCWVLAVLLALAQGGTG 376


>gi|87198509|ref|YP_495766.1| hypothetical protein Saro_0484 [Novosphingobium aromaticivorans DSM
           12444]
 gi|87134190|gb|ABD24932.1| protein of unknown function UPF0118 [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 406

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/317 (13%), Positives = 104/317 (32%), Gaps = 17/317 (5%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F  PV +A+I      P+      +    +   + IA ++++ + ++ LL +        
Sbjct: 60  FLPPV-TAMIFTIVLSPLADRLT-RMGLPNVLASFIAILALVAVVVMALLLIL------- 110

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           +     V         V R  +++ G +W              +   S   +       I
Sbjct: 111 QPAFVMVDQVPTLARQVARRFAELRGNLW---WIADVNRQLARITGHSAREVVVASPSVI 167

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
            + A     + L+  L+++     +    R    I   L             ++ R V +
Sbjct: 168 EQVAFATPSVILETLLTLLMTFFMIEARIRMKRRI---LLDRHTFNASVRLARVLRDVQE 224

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            + S  L +  +  G G+++    W  G+ + V  G +  ++  +P   P+    +   +
Sbjct: 225 RVASYILTVAQVNFGVGVLVALGAWSFGLAAPVMWGGLAFVLNFLPYLGPLVMMGLLGLV 284

Query: 270 LIKGNIFNATCLF--LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            +      A  L   L       +    + P ++G    +  +     +       G+LG
Sbjct: 285 GLGTAPTVAVGLLPALAFLGLHAVESNVVTPSILGARFTVNPVAILISISYFSWIWGVLG 344

Query: 328 LFIGPVLMALIAVIWKE 344
             +   ++  ++ +   
Sbjct: 345 ALLSVPILLTVSALLDH 361


>gi|194743404|ref|XP_001954190.1| GF18152 [Drosophila ananassae]
 gi|190627227|gb|EDV42751.1| GF18152 [Drosophila ananassae]
          Length = 819

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 73/209 (34%), Gaps = 5/209 (2%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           I       G   +++ L +I    ALF+           L       + +   KI+  + 
Sbjct: 603 ILSLVLSGGQACIEFILDMIVFFTALFYLLSSSKEKYAPLQITKYLGYSSSGIKIADALE 662

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSI 267
             I    + M   +   GL     + + G         + A++A  P  G+        +
Sbjct: 663 NSITVVLVSMFKCSTFTGLFTWLVHTVFGARIVFLPSALAAMLAAAPFLGSYWCAVPAFL 722

Query: 268 YLLIKGNIFNA-TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
            L +  + F A   LFL         +  +   L GG            + GG+  +G  
Sbjct: 723 ELWLAQDRFYAGLILFLLQFFVPSSFETAIYADLKGGG---HPYLNGLAIAGGMYWIGWQ 779

Query: 327 GLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G   GP+++     +++ + +A++ ++E 
Sbjct: 780 GAIFGPLMLCFFIGLFEVATLAMRSHQEP 808


>gi|254443202|ref|ZP_05056678.1| conserved domain protein, putative [Verrucomicrobiae bacterium
           DG1235]
 gi|198257510|gb|EDY81818.1| conserved domain protein, putative [Verrucomicrobiae bacterium
           DG1235]
          Length = 287

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 58/201 (28%), Gaps = 11/201 (5%)

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR---DGFSISQQLDSLGEHLFPAYWKK 202
              I R AS    I  +  +     I  +F F      G  I                 +
Sbjct: 65  STIISRLASSLASIAGNASI---ISIYVIFLFLEQRSFGPKIKAMTRGTD---SSKNIFE 118

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS- 261
           I   +    R+     T+ +   GLV        G+      GV+   +  IP    I  
Sbjct: 119 IISEINADTRTYIGIKTLTSAITGLVSFGIMAAIGLDFAAFWGVLIFFLNFIPTVGSILA 178

Query: 262 -FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
                 + LL          +         +V   L P L+G  + L  L     L    
Sbjct: 179 TIFPSLLSLLAFDTPLPIVGIIGGVVATQVLVGNVLEPRLMGNSLNLSPLVILLSLSFWG 238

Query: 321 RTMGLLGLFIGPVLMALIAVI 341
              G+ G+F+   +  +  +I
Sbjct: 239 ALWGVTGMFLCVPITVITMII 259


>gi|195344362|ref|XP_002038757.1| GM10992 [Drosophila sechellia]
 gi|194133778|gb|EDW55294.1| GM10992 [Drosophila sechellia]
          Length = 818

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 75/212 (35%), Gaps = 5/212 (2%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           I       G   +++ L +I    ALF+           L       + +   KI+  + 
Sbjct: 603 ILSLVLSGGQACIEFILDMIVFFTALFYLLSSSQEKYAPLQITKYLGYSSSGIKIADALE 662

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSI 267
             I    + M   +   GL     + + G         + A++A  P  G+        +
Sbjct: 663 NSITVVLVSMFRCSTFTGLFTWLVHTVFGARIVFLPSALAAMLAAAPFLGSYWCAVPAFL 722

Query: 268 YLLIKGNIFNA-TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
            L +  + F A   LFL         +  +   L GG            + GG+  +G  
Sbjct: 723 ELWLAQDRFYAGLILFLLQFFVPSSFETAIYADLKGGG---HPYLNGLAIAGGMYWIGWQ 779

Query: 327 GLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           G   GP+++     +++ + +A++ ++E  +S
Sbjct: 780 GAIFGPLMLCFFIGLFEVATLAMRSHQEPRNS 811


>gi|65321758|ref|ZP_00394717.1| COG0628: Predicted permease [Bacillus anthracis str. A2012]
          Length = 133

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 52/119 (43%)

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF 282
              G V   ++W  G+   + LG+I  +  +IP   PI     ++ +    +        
Sbjct: 2   FSIGGVSVLSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGAIPALMIAATVSTSLLIKAG 61

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +  AI  F+    L P++VG  +++  +     L+ G    G++GL I   ++A+I  +
Sbjct: 62  ITIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEVAGIVGLLISVPVLAVIRTV 120


>gi|300712601|ref|YP_003738414.1| permease [Halalkalicoccus jeotgali B3]
 gi|299126285|gb|ADJ16623.1| permease [Halalkalicoccus jeotgali B3]
          Length = 210

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 78/213 (36%), Gaps = 19/213 (8%)

Query: 159 IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
           +F+    +    I+ +FF  RD   I +          P    +  + V + ++S + G 
Sbjct: 1   MFVSQLYNAFLTILFVFFLLRDEQRIKEWGYENVLEGHPNLI-RYIQAVNQGLKSVYFGY 59

Query: 219 TIIAIGEGLVLGSAYWLAG--------VPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
           T+  +   ++    Y            +P    L + T + ++IP  G  + + AV +YL
Sbjct: 60  TLTMLAITIISAILYHALNLTALSGLAIPHPTLLAIATGLASVIPLVGRNLLYGAVLVYL 119

Query: 270 -------LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
                   +    F      +       I+   +RP L G     P     F  + G   
Sbjct: 120 SILALRSYLTLLWFPGLFFIVMNLAFDSIIRIYVRPSLSGRL--FPIGLVMFAYLLGPPI 177

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            G  G+F+GP +M ++    +E +  +    ++
Sbjct: 178 FGWYGIFLGPFVMVVVVQFLREPLAILVSPLDE 210


>gi|254432455|ref|ZP_05046158.1| hypothetical protein CPCC7001_2348 [Cyanobium sp. PCC 7001]
 gi|197626908|gb|EDY39467.1| hypothetical protein CPCC7001_2348 [Cyanobium sp. PCC 7001]
          Length = 355

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 99/290 (34%), Gaps = 17/290 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  F A  ++A +I F    I S ++ ++        V+     + L  + +++L    +
Sbjct: 34  LAPFPALFVAAALIAFLLD-IPSRWLRQRGLPRPLAMVLVLGVALGLLALAVIWLVPRLI 92

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL--KILSETFLKTN 144
            ++ ELV+           +P WL+     + A E W +    P              + 
Sbjct: 93  DQLAELVA----------ALPGWLAQGEVWLDALEAWAEDQGIPTDFGDLSSDLLSRLSK 142

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               + +         +   ++ + +++   F    G  IS  L      L P     + 
Sbjct: 143 LATQLSQQLLGLLGATVGLTVNTVIVLVLAVFLLLGGERISAGLAQW---LPPEARSLVV 199

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
             + +  R  F G   +A     +    + L  +P  V   V      ++P  + ++   
Sbjct: 200 DTLSRTFRGYFAGQVALATILSSLQIVVFTLLAIPYGVLFAVAIGFTTLVPYASALTIVL 259

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           VS  L+   +      + +       +VD+ ++P L+G  + L       
Sbjct: 260 VSG-LVALNDPSTGAEVLVAAIAVGQLVDQIIQPRLMGSIVGLQPAWLLI 308


>gi|325914496|ref|ZP_08176840.1| putative permease [Xanthomonas vesicatoria ATCC 35937]
 gi|325539266|gb|EGD10918.1| putative permease [Xanthomonas vesicatoria ATCC 35937]
          Length = 360

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/336 (12%), Positives = 109/336 (32%), Gaps = 18/336 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +    +  +L+  +    PV+ A        PI                ++  +     
Sbjct: 25  VLATLAVGYTLWAAQTIILPVMLAAFFALIGNPILRGLRKLYIPRFLGALLVLCLG---- 80

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               L                 V  A +    + R + D    M  +    ++ +     
Sbjct: 81  ----LAGTVTLAAQLAGPAAEWVQQAPRQMRQIARDVRDFTKPMMQANQAAENFARAAGG 136

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           +      +    +D   +   R          S++ +++  FFF   G S+ +   +L  
Sbjct: 137 EGQRGVQIVRTQMDDPYKALVR----TPKLAASVLAVVLLTFFFMVYGESLQRHAIALLP 192

Query: 194 HLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH--VALGVITAI 250
           +     +  +I   + + +    L +++I    GL+     ++  +P    +  G + A+
Sbjct: 193 NRQQQRFTTEIMLDIEREVSRYVLTISVINTLVGLIFAGILYVLQIPLPEALLWGTVVAL 252

Query: 251 MAMIPGGAPISFTAVSIYLLIK--GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +   P   P+    + + +         +A    +       I  + + P ++G  + + 
Sbjct: 253 LNFAPYVGPLIGVMLMLLMGFVEFHTPLSAMLPAILYLALHTIEGQVVTPIVLGRRMAIS 312

Query: 309 FLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWK 343
            L     L+      G++GL +  P+L+ +  V+ +
Sbjct: 313 PLMLILALMLFGWLWGMVGLLLAVPLLVCIKMVLSR 348


>gi|254498690|ref|ZP_05111408.1| transporter, permease [Legionella drancourtii LLAP12]
 gi|254352138|gb|EET10955.1| transporter, permease [Legionella drancourtii LLAP12]
          Length = 368

 Score = 51.0 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/341 (12%), Positives = 110/341 (32%), Gaps = 22/341 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFF---APVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           + + R +     L+ ++ +  F    + +L  +II    W + ++     +   T   ++
Sbjct: 4   KSMSRIIAFASGLIIVWIIGYFLIVGSSILIPIIIAVFIWHLLNTTSGIIQRIPTIGELL 63

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
                M L            +  +   VS V+ A+               G +   L T 
Sbjct: 64  PMWLSMILSFAVAAIFITIFVNIISNNVSNVIDAS---------------GRYQENLLTI 108

Query: 126 HLSHPQSLKILSETFLKTNGIDF-IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                +  +I     +        +     +   +F     S + + + + F + +    
Sbjct: 109 VDGIDKKYRIEVLANMNQLIKTINVQTIVLKISGVFTTLASSTVLIGLYVAFLFVEQHFF 168

Query: 185 SQQLDSLGEHL-FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
            +++D++   L        I   +    ++     T++++G  +         GV     
Sbjct: 169 QRKMDAMITSLENQQLMTNILTHIVNDTQTYLGLKTLLSLGTAIASWFIMKWVGVDFAEF 228

Query: 244 LGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             ++   +  IP    I       ++ ++   N      + +      FIV   + P  +
Sbjct: 229 WALLIFFLNYIPNIGAIIATLFPATLAVVQFANWLPFIEVIVGLGTVQFIVGNLIEPRFL 288

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              + L  L     L       G+LG+F+   +  ++ +I+
Sbjct: 289 SHTLNLSPLVILISLALWGAIWGILGMFLSVPITVMLMIIF 329


>gi|310765717|gb|ADP10667.1| Putative inner membrane protein [Erwinia sp. Ejp617]
          Length = 345

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 50/337 (14%), Positives = 116/337 (34%), Gaps = 22/337 (6%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              +++   + +IL  +        P L AL       P+ S  I +       +A+   
Sbjct: 11  QNILLKLATLVVILAGIKLSAEIVVPFLLALFFAIVINPLVSVLIRR--GVRRGMAITLV 68

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + VM L +  L+ +    +    E+  ++   +   + +                  +HL
Sbjct: 69  MVVMLLVLTLLVIMVAGSLQAFSEVYPQLQAQSAQKLSM-----------------LQHL 111

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +    L I S +  +      I   A+     F      ++ +I+ + F   +   +  +
Sbjct: 112 AARFHLNISSSSLAQRLDPGAIMDVATTMLRQFSGAMTRLVLVIMTVIFMLFEVHHLPYK 171

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L      + P           K +        +I++  G+++  A    G+   +  G++
Sbjct: 172 LRYAL--VNPQIHIAGLHKALKGVTHYLALKALISLVTGVLVWLALLALGIKFALLWGIV 229

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             ++  IP  G  I+     +  L+      A  +         ++   L P L+G  + 
Sbjct: 230 AFVLNFIPNIGPVIAGIPPVLQALLLNTPLEAGLVAALFVSIHMLLGNLLEPRLLGRGLG 289

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L  L  F  L+     +G +G+ +   L ++  ++ +
Sbjct: 290 LSSLVVFLSLIFWGWLLGPVGMLLSVPLTSVCKILME 326


>gi|297191311|ref|ZP_06908709.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|297150859|gb|EFH30832.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 392

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 81/285 (28%), Gaps = 15/285 (5%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
             V   L++     P+                 I+    + L +  L  +      E   
Sbjct: 80  VAVFLGLVVTAVLRPVADLVARVLP--RPLAVAISLFGTIALVLGVLALVGEAVAGERTT 137

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           LV +     +    +   L   P  +    L          ++      L ++    I  
Sbjct: 138 LVREFRTGIER---IENRLERPPFRVDPEAL--------TDVQSRIGQLLSSHRSTVISE 186

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
             S  G   ++        +    FF   G             +         R   +  
Sbjct: 187 ALSGAGK-LVEVLTVFALALFCSVFFIHSGDRQWGWFCGQLPPVARRRATVAGRAAWRTF 245

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLL 270
                G+ ++A    +++G A +  GVP  + L ++    A +P  G+P++    ++  L
Sbjct: 246 TGYTHGILLVAATNAILVGIALFALGVPLALPLALLEFFAAFVPLVGSPVALAVAAVVAL 305

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                  A  +     +   I    L P ++   ++L  +     
Sbjct: 306 AAKGPLTAAVVVALIVVIGQIEGHLLHPVVMSWAVRLHPVVVALS 350


>gi|325921822|ref|ZP_08183639.1| putative permease [Xanthomonas gardneri ATCC 19865]
 gi|325547699|gb|EGD18736.1| putative permease [Xanthomonas gardneri ATCC 19865]
          Length = 337

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/336 (13%), Positives = 107/336 (31%), Gaps = 18/336 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +    +  +L+  +    PV+ A        PI                ++  +     
Sbjct: 2   VLATLAVGYTLWAAQTIILPVMLAAFFALIGNPILRGLRKLYIPRFLGAFMVLCLG---- 57

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               L                 V  A +    + R + D+   +  +    ++ +     
Sbjct: 58  ----LAGTVALAAQLAGPAAEWVQQAPRQMRQIARDVRDLTKPVMQANQAAENFARAAGG 113

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           +      +    +D   +   R          S++ +++  FFF   G S+ +   +L  
Sbjct: 114 EGQRNVQIVRTQMDDPYKALVR----TPKLAASVLAVVLLTFFFMVYGESLQRHAIALLP 169

Query: 194 HLFPAYW--KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL-AGVPSHVALGVITAI 250
           +     +  + +  I  +V R       I  +   +  G  Y L   +P  +  G + A+
Sbjct: 170 NRQQQRFTTEIMLDIEREVSRYVLTISVINTLVGLVFAGILYALKIPLPEALLWGTVVAL 229

Query: 251 MAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +   P   P+    + + +         +A    +       I  + + P ++G  + + 
Sbjct: 230 LNFAPYVGPLIGVMLMLLMGFVEFRTTLSAMLPAILYLALHTIEGQVVTPIVLGRRMAIS 289

Query: 309 FLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWK 343
            L     L+      G++GL +  P+L+ +  V+ +
Sbjct: 290 PLMLILALMLFGWLWGMVGLLLAVPLLVCIKMVLSR 325


>gi|215433125|ref|ZP_03431044.1| putative transmembrane protein [Mycobacterium tuberculosis EAS054]
 gi|289756269|ref|ZP_06515647.1| conserved transmembrane protein [Mycobacterium tuberculosis EAS054]
 gi|289696856|gb|EFD64285.1| conserved transmembrane protein [Mycobacterium tuberculosis EAS054]
          Length = 280

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 89/261 (34%), Gaps = 16/261 (6%)

Query: 14  WMIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +I+  ++  L+ L  F     PVL AL++     P      S+          +  +S 
Sbjct: 25  LVILAAMVALLWVLNKFEVIVVPVLLALMLSALLVPPVDWLDSR-GLPRAVAVTLVLLSG 83

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             +    L F+    +  +  LV++V  +        RWL + P  +   ++     +  
Sbjct: 84  FAVLGGILTFVVSQFIAGLPHLVTEVERSIDSAR---RWLIEGPAHLRGEQIDNAGNAAI 140

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           ++L+              +   A        +   + + ++  L FF   G SI Q +  
Sbjct: 141 EALRNNQAK---------LTSGALSTAATITELVTAAVLVLFTLIFFLYGGRSIWQYVTK 191

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                     +   R     +        ++A+ +   +G+   + GVP  + L  +   
Sbjct: 192 AFPASVRDRVRAAGRAGYASLIGYARATFLVALTDAAGVGAGLAVMGVPLALPLASLVFF 251

Query: 251 MAMIPGGAPISFTAVSIYLLI 271
            A IP    +    +++ + +
Sbjct: 252 GAFIPLIGAVVAGFLAVVVAL 272


>gi|182680515|ref|YP_001834661.1| hypothetical protein Bind_3619 [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182636398|gb|ACB97172.1| protein of unknown function UPF0118 [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 347

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 52/338 (15%), Positives = 109/338 (32%), Gaps = 35/338 (10%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            + +F+++ +L+F    F P+  AL+I    WP+  +           LA+I T+ +   
Sbjct: 12  LLSLFLMVSALFFAAAVFGPMAFALLIMAIVWPLDQALRKILPRG---LALIVTIFMTFT 68

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            ++    L  +G  ++   + +                          L   +    + L
Sbjct: 69  VVITFTSLITWGGGQITHWLVQNQ----------------------GRLQDLYSFGARWL 106

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           +      + T    F   +  R     +    S+    + +F F   G   +       +
Sbjct: 107 EDHDIFVIGTIAERFNVVWLIRVFQGIVVRANSLAGFTLLVFIFLAMGLLEADAFRKNLQ 166

Query: 194 HL--------FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            L        + +        +    R   L  ++ ++  GL++    +  G+    A G
Sbjct: 167 SLDVRNEGSQWGSRLVAACGAIGAKWRRYMLMRSLASLLTGLLIWGFAFAVGLELSAAWG 226

Query: 246 VITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V++  +  IP   P+          L   G++  A  + +      F++   L P   G 
Sbjct: 227 VMSFALNYIPFIGPLVATILPTLFALAQTGSLETALLVLMTITAIQFLIGSYLEPLFTGK 286

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            + +      F +       GL G  IG  +M     I
Sbjct: 287 ALAISPFFVVFAVFFWSFLWGLPGTVIGVPIMIACLTI 324


>gi|293372557|ref|ZP_06618939.1| conserved domain protein [Bacteroides ovatus SD CMC 3f]
 gi|292632366|gb|EFF50962.1| conserved domain protein [Bacteroides ovatus SD CMC 3f]
          Length = 189

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 66/200 (33%), Gaps = 29/200 (14%)

Query: 15  MIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +I+ I+ + +   +    F   +L AL I        +  + K++   +  A++ T   +
Sbjct: 12  LIVIILFMGVIIFRQITPFLGGLLGALTIYILVRGQMNHLVEKRKLKRSISALLITAETI 71

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +F++PL    +    +++++             V  ++ +                   
Sbjct: 72  FVFLIPLGLTVWMVANKLQDINLDPQTYIAPIQQVAEFIKE------------------- 112

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFL----DYCLSIIFMIIALFFFYRDGFSISQQ 187
                    L  + + FI     R G I +       +++  MI  L+F    G      
Sbjct: 113 ---KTGYDVLGKDTLSFIMSILPRIGQIIMESISSLAINLFVMIFVLYFMLIGGKRWKLM 169

Query: 188 LDSLGEHLFPAYWKKISRIV 207
             +    + P   K  ++ +
Sbjct: 170 SMTFCHLMKPIRRKSFTKSI 189


>gi|15644101|ref|NP_229150.1| hypothetical protein TM1349 [Thermotoga maritima MSB8]
 gi|148270563|ref|YP_001245023.1| hypothetical protein Tpet_1434 [Thermotoga petrophila RKU-1]
 gi|170289269|ref|YP_001739507.1| hypothetical protein TRQ2_1480 [Thermotoga sp. RQ2]
 gi|281412871|ref|YP_003346950.1| protein of unknown function UPF0118 [Thermotoga naphthophila
           RKU-10]
 gi|8928513|sp|Q9X170|Y1349_THEMA RecName: Full=UPF0118 membrane protein TM_1349
 gi|4981909|gb|AAD36420.1|AE001789_5 conserved hypothetical protein [Thermotoga maritima MSB8]
 gi|147736107|gb|ABQ47447.1| protein of unknown function UPF0118 [Thermotoga petrophila RKU-1]
 gi|170176772|gb|ACB09824.1| protein of unknown function UPF0118 [Thermotoga sp. RQ2]
 gi|281373974|gb|ADA67536.1| protein of unknown function UPF0118 [Thermotoga naphthophila
           RKU-10]
          Length = 338

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 55/353 (15%), Positives = 116/353 (32%), Gaps = 24/353 (6%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R+ + +       + + I  +        FA ++  +       P+   F+ K +    F
Sbjct: 5   RKILEDKAFFFTTLYILISFLVFKIFPDVFAVIVLMVFFTLLLDPV-IRFLEKLKFGKYF 63

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             V A +    + +  L  +      E    +  +    +                  S+
Sbjct: 64  SRVAALLLFFFVMVYSLYMIIPPVFNEFGSFIEFMTKVFE------------------SK 105

Query: 122 LWTKHLSHPQSLKILSET--FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           +W  ++  P+ + +  +   FL+    DF+    S     F+     I+F +  L +   
Sbjct: 106 IWKDYIKSPELMPVFDKIMNFLEPKLTDFLNYVFSLVTTNFVSVTTIIVFTLFGLGYTVF 165

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
               I+     +      A  ++  R V   +      + I A+  GL     +    + 
Sbjct: 166 YIREIASFFVLIYPKSVRAEAREFFRDVYASMGRYIRVIFINAVIIGLSYWIVFEAFNLK 225

Query: 240 SHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
               + +   +   IP  G  + +  V ++ L  G       L    AI +  V   +  
Sbjct: 226 YSAIISLWAFVTNFIPIVGVVLEYIPVLLFSLTLG--VKGVLLIALFAILIHAVAFVVFI 283

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            L+ G  KL  +     ++   +  GL G F+G  L     V W++ +  + E
Sbjct: 284 QLMKGLEKLNPVYIILSILFFGKLFGLFGSFVGVPLALFFKVFWRKFLRPLFE 336


>gi|166032030|ref|ZP_02234859.1| hypothetical protein DORFOR_01732 [Dorea formicigenerans ATCC
           27755]
 gi|166028483|gb|EDR47240.1| hypothetical protein DORFOR_01732 [Dorea formicigenerans ATCC
           27755]
          Length = 456

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/370 (11%), Positives = 96/370 (25%), Gaps = 70/370 (18%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLK-----------------GFFAPVLSALIIGFTS 44
           R      Q I R M +F+I+ +                          PVL   +I +  
Sbjct: 37  RRPSRIRQQINRGMTVFVIVAACILFYFALLRLGHISDVIFKIIDVLKPVLYGCVIAYLL 96

Query: 45  WPIYSS--------FISKKEE-------SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
            PI              + ++       S +    ++ + ++ L  V L  L       +
Sbjct: 97  NPIVKRVDAFLIPKLQERMKKPENAEKVSRSVGIFVSLIILIVLITVLLNMLIPELYSSI 156

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           + +V  +       +     +  +      + L          L     T L T     +
Sbjct: 157 RNMVLTLPKQVNDALDKINSIQ-LEDSTTVAILKNALEEGTTMLTNWLRTDLMTQVNSLM 215

Query: 150 PRFASRFGMIF---LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
                    +     +  + +I  +  L+          + + +L           I+  
Sbjct: 216 SNLTVGIFNVISEVFNMLIGVIVSVYILYSKEIFARQCKKAVYALFRADRANMVLHITTK 275

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
             ++     +G  + +   GL+      +  +P  + + VI  +  +IP   P      S
Sbjct: 276 SNEIFGGFVIGKILDSAIIGLLCFIGLTILNMPYTMLVSVIVGVTNVIPFFGPYIGAIPS 335

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
             L+   +        ++  +                                       
Sbjct: 336 TILIALEDPMKGVYFLIFILVLQQ----------------------------------FD 361

Query: 327 GLFIGPVLMA 336
           G  +GP ++ 
Sbjct: 362 GNILGPKILG 371


>gi|271968538|ref|YP_003342734.1| hypothetical protein Sros_7304 [Streptosporangium roseum DSM 43021]
 gi|270511713|gb|ACZ89991.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021]
          Length = 351

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 53/335 (15%), Positives = 106/335 (31%), Gaps = 21/335 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             + L  +  +     P   AL +     P+      ++      L  +  ++V+ L + 
Sbjct: 23  AVVTLAGIRAVADIAGPAFLALTLTIAVSPLRVWL-RRRGARPWVLVAVPLLTVLLLLVA 81

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +  L       +  L +      +    + R +  +             L  P +L  L
Sbjct: 82  LVGSLVVSAAQLVALLPTYAAQYQRLLASIARGIDHLGITQEQVNSALSKL-DPGALIGL 140

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            + FL   G+  I        ++     L                    + L +   H  
Sbjct: 141 VQGFLG--GLLSIGSALILIALLLFGMSLDATVT-----------HDAIRSLRTSRPHTV 187

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
            A  +        +I ST  G     +   ++  +A W+ GVP  +  G++  I   IP 
Sbjct: 188 GALSEFARGTCSYLIVSTVFG-----LIVAVLDTAALWIMGVPLPLLWGLLAFITNYIPN 242

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G  I     ++  L+         + +  ++  F++   ++P  VG    L    T   
Sbjct: 243 IGFVIGVIPPALLALLDSGPSTMVAVVVVYSVLNFVIQSVIQPKFVGESAGLSTTVTILS 302

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+     +G LG  +   L A    +  +S  A +
Sbjct: 303 LLVWAYELGALGAILAVPLSAFARALLIDSDPAAR 337


>gi|255071901|ref|XP_002499625.1| predicted protein [Micromonas sp. RCC299]
 gi|226514887|gb|ACO60883.1| predicted protein [Micromonas sp. RCC299]
          Length = 683

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 66/198 (33%), Gaps = 21/198 (10%)

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK--VI 211
           ++F      Y       +  + F       +  +L S          KK   I+     +
Sbjct: 361 TQFANNLFGYLGDAAVTMFYVLFLLAP-PRVPTRLRSQIVRRIHGAVKKFVLIMVALSAV 419

Query: 212 RSTFLGMTIIAIGE-----GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           R+T +G  I A G      G +   ++WL  +P+   LG + A    +P    I      
Sbjct: 420 RATMVGTLIYACGVPGSLAGSIAIVSFWLFFIPN---LGSVVATAIPLPL---IVLLPD- 472

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
              L     + A  +  +G+  +      L P +    + L  +     LV      G +
Sbjct: 473 ---LSNAQRWCALFVPAFGSFVVG---DILGPTVYRRGLGLNEVVILLSLVFWFSVWGGI 526

Query: 327 GLFIGPVLMALIAVIWKE 344
           G  +   +M  + +  +E
Sbjct: 527 GAVLAVPIMCAVRISLEE 544


>gi|84502889|ref|ZP_01001002.1| Conserved hypothetical membrane/transport protein [Oceanicola
           batsensis HTCC2597]
 gi|84388872|gb|EAQ01742.1| Conserved hypothetical membrane/transport protein [Oceanicola
           batsensis HTCC2597]
          Length = 357

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/324 (13%), Positives = 101/324 (31%), Gaps = 7/324 (2%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
             S+   K    P++   +I  T  P+            T +A +A ++ + +     L+
Sbjct: 14  FWSISLAKDVVLPIVLGFLIALTLSPLVRWLYKL--GVPTGIAAVALIATIGMSSSFGLY 71

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L       + E + +V    +H +   R          A +   +            +  
Sbjct: 72  LLSGPAASLVETLPEVRAEAEHKLSAVRQKVQ--QVQQAEKEMQELAQGENETAGEDDEG 129

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA-Y 199
             T  +   P         F     ++I  +I   F    G     +L            
Sbjct: 130 DVTRVLVDEPGMLETALASFAGTGSALIIALILAMFLLASGDMFQTKLVQSFPKFSDKKR 189

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             +++  + + I      +T+I    GL +G + +   +P     GV   ++  +P    
Sbjct: 190 AIRVANDIERQISRYLGAITVINACLGLAIGISLYALDMPYAHVWGVAAFLLNYLPYLGA 249

Query: 260 I--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
           +       ++ L+    +           +   I  + + P+LVG  + L     F  ++
Sbjct: 250 MLGVVAVAAVSLITYDTVGQMLIPPGVYLLLTSIEGQMVTPWLVGRHLSLNAAAVFVAVI 309

Query: 318 GGVRTMGLLGLFIGPVLMALIAVI 341
                 G+ G  +    +  + V+
Sbjct: 310 FWAWLWGVAGALMAVPFLVFVKVV 333


>gi|257061208|ref|YP_003139096.1| hypothetical protein Cyan8802_3434 [Cyanothece sp. PCC 8802]
 gi|256591374|gb|ACV02261.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 8802]
          Length = 345

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 93/302 (30%), Gaps = 7/302 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + I    L+ ++     V +A+I       + +  ++ +         +A    +   + 
Sbjct: 12  LVISGYILWEIRQLLLLVFTAIIFATALNRLINRLLTWQFRGVKLTRNLAIFISLIGILF 71

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             +  F   +    E    ++          R    +     +   W       + L   
Sbjct: 72  LTILFFLLIVPPFLEQFDNLIKLLPTIWERLRATVILLVQKQSHFDWLPPPPSLKDLIEQ 131

Query: 137 SETFLKTNGIDFIPRFASRFGMIF-LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           S+        +F   F++    I  L + L +  M++     YR G         L    
Sbjct: 132 SQPLFTQIFKNFFAFFSNSVVAIIQLLFVLVLTVMMVINPQLYRKG------FLKLFPSF 185

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +I  +    + +   G+ I  +   ++ G   W+  V   +   ++  ++  IP
Sbjct: 186 YRHRVDEIFTLSEIALGNWLTGIMINCLFIAILSGVGLWILQVKLVLVHALLAGLLNFIP 245

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P +     I + +    +    + +W  I   I    L P ++   + L    T   
Sbjct: 246 NIGPAASVVFPIMVAVLDEPWKIWVILIWYFIIQNIESYWLTPTVMAKQVSLLPAITLMA 305

Query: 316 LV 317
            +
Sbjct: 306 QI 307


>gi|149198168|ref|ZP_01875215.1| hypothetical protein LNTAR_15942 [Lentisphaera araneosa HTCC2155]
 gi|149138770|gb|EDM27176.1| hypothetical protein LNTAR_15942 [Lentisphaera araneosa HTCC2155]
          Length = 649

 Score = 50.6 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 4/119 (3%)

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           I  +V   ++    G   I + E  +    + + GVP  + L +I+++  ++P   PI  
Sbjct: 475 ILDVVIDKMQRWVRGCMFIILVELPIFLIIFSIMGVPYAIPLAIISSLQVLLPFLGPIIA 534

Query: 263 TAVS-IYLLIKGNIFNA--TCLFLWGAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGLV 317
            A++ +  L  G    A    L L   + + +++   L P LVG  + L  L T   ++
Sbjct: 535 IALTFVICLFNGITDPAFYLGLALVYFLIVTLLEGFFLYPKLVGASLGLTLLETIIVVL 593


>gi|33862876|ref|NP_894436.1| hypothetical protein PMT0603 [Prochlorococcus marinus str. MIT
           9313]
 gi|33634792|emb|CAE20778.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9313]
          Length = 348

 Score = 50.6 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/306 (10%), Positives = 95/306 (31%), Gaps = 4/306 (1%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
           V  + L+     + + +++      +     ++K    +   +I  V++  +       +
Sbjct: 5   VLFWSLREVLIHLFAGIVLAMALCTLVGELRTRKPMPRSMALLICLVALALVVGTATAIV 64

Query: 82  FYYGMLEMKELVSKVVLANQH----GIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
                 +  +L+ ++  A +      I      S +  G+  ++   +       L  L 
Sbjct: 65  VPPFTEQFHQLLLQLPSAAKELWKLAIGAINQTSAMVYGVDNNKGGWEEQLFANGLNALP 124

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
           +     +G+    +             + ++F++           +      SL    + 
Sbjct: 125 DGASLASGVREGLQGLLGLAGNLGSGLVQLLFVLAMSLMVAVQPTAYRDVAISLLPSFYR 184

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
              + I       + S  +G+ I +    L+      L G+   +A  ++  ++ +IP  
Sbjct: 185 RRARSILSQCGDALSSWMVGVLISSFCVALLAAIGLSLLGIKLVMANALLAGMLNVIPNV 244

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P   T   + + +    + A  +     +   +    + P ++   +KL    T     
Sbjct: 245 GPTLSTIFPMSVALLDAPWKAVAVLGLYVVIQNLESYVITPSVMHHQVKLLPGLTLTAQF 304

Query: 318 GGVRTM 323
                 
Sbjct: 305 VFTVVF 310


>gi|294809935|ref|ZP_06768609.1| conserved domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|294442781|gb|EFG11574.1| conserved domain protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 183

 Score = 50.6 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 59/176 (33%), Gaps = 29/176 (16%)

Query: 15  MIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +I+ I+ + +   +    F   +L AL I           + K++   +  A++ T   +
Sbjct: 12  LIVIILFMGIIIFRQITPFLGGLLGALTIYILVRGQMRYLVEKRKLKRSLSALLITAETI 71

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +F++PL    +  + +++++             V  ++ +                   
Sbjct: 72  FVFLIPLGLTVWMVVNKLQDINLDPQTYIAPIQQVAEFIKE------------------- 112

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFL----DYCLSIIFMIIALFFFYRDGFS 183
                    L  + + FI     R G I +       +++  MI  L+F    G  
Sbjct: 113 ---KTGYDVLGKDTLTFIVSILPRIGQIIMESISSLAINLFVMIFVLYFMLIGGKK 165


>gi|313676979|ref|YP_004054975.1| hypothetical protein Ftrac_2891 [Marivirga tractuosa DSM 4126]
 gi|312943677|gb|ADR22867.1| protein of unknown function UPF0118 [Marivirga tractuosa DSM 4126]
          Length = 363

 Score = 50.6 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 73/208 (35%), Gaps = 9/208 (4%)

Query: 155 RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRST 214
            F  I     ++++ ++   FF   +     ++   L  + +          + K++ + 
Sbjct: 152 NFISITGSIFVAVLAVLFITFFLLYEKGLARRKFIQLIPNKYFEVSIGAIYKIEKLLSNY 211

Query: 215 FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS---------FTAV 265
            LG+    I    +      + G+   V + V  A+  +IP   PI           T  
Sbjct: 212 LLGLLFQMISIFTIASVGLSILGIKYAVTIAVFAAVANLIPYAGPILGATFGIIVGVTTG 271

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            I+      +F    +    A+     +  L+P +    +K   L  F  +  G    G+
Sbjct: 272 GIFEFNNELLFLVIKIVSVFAVVQVTDNIVLQPLIFSKSVKAHPLEIFVIIFAGASLAGV 331

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENK 353
           +G+     +  +I VI+ E     K+ K
Sbjct: 332 VGMVAAIPVYTVIRVIFIELYQGYKQYK 359


>gi|218438070|ref|YP_002376399.1| hypothetical protein PCC7424_1078 [Cyanothece sp. PCC 7424]
 gi|218170798|gb|ACK69531.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7424]
          Length = 336

 Score = 50.6 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 50/340 (14%), Positives = 116/340 (34%), Gaps = 17/340 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++  + + + +  L+ ++       +A+++      I    + K +    F  +I  V 
Sbjct: 5   KLIGLVALILSIYILWKIRQVVLLAFTAVVLATVINRIVVFLMPKLKVKRGFSIIITFVL 64

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++ +  +  L +F   + + +EL+++V      GI        I    +   L       
Sbjct: 65  LLVVLGLFSLIVFPPFIEQFRELINQV----PQGIEQLDQFRQILPEPFQQTLSDTINQL 120

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            + ++++                            +S + +++ +     +     Q   
Sbjct: 121 VRPIRLIESRLFGNF---------FALFSSTFTIIVSTLLVLVLIIMLLSNPKQYRQAFI 171

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L    F     ++       +   F+G+        ++ G   W+ GVP  +A  ++  
Sbjct: 172 LLFPASFRPRADEVLTQCEDSLAGWFIGIIFNMTVITILSGFGLWILGVPLPLANALLAG 231

Query: 250 IMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           ++  IP  G        ++I LL     + A  +     +   I    L P ++   + L
Sbjct: 232 LLTFIPNVGPTLSVIPPMAIALL--DAPWKALAVLGLYILIQQIESNILTPIVMQKQVSL 289

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
               T    V      G LGLF+   L  +  V+ KE ++
Sbjct: 290 LPAVTLIAQVAFATFFGFLGLFLALPLTIIAQVLLKELLI 329


>gi|219870412|ref|YP_002474787.1| PerM protein, putative permease [Haemophilus parasuis SH0165]
 gi|219690616|gb|ACL31839.1| PerM protein, predicted permease [Haemophilus parasuis SH0165]
          Length = 346

 Score = 50.6 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 53/124 (42%), Gaps = 2/124 (1%)

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNA 278
           I+++  G+ +     +A V   V  G ++ ++  IP  G+ I+   +++   +       
Sbjct: 204 IVSLLTGISIWVLLEIADVQYAVLWGTLSFLLNYIPNIGSIIAGVPIAVQAFLLNGFSVG 263

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMAL 337
             + +       ++   L P ++G  + L  L  F  L+     +G +G+ +  P+ MAL
Sbjct: 264 LGVSVGIIAINMVISNILEPRMMGRTLGLSTLIVFLSLLFWGWLLGTVGMLLSVPLTMAL 323

Query: 338 IAVI 341
              +
Sbjct: 324 KIAL 327


>gi|167854953|ref|ZP_02477728.1| ribosome recycling factor [Haemophilus parasuis 29755]
 gi|167853910|gb|EDS25149.1| ribosome recycling factor [Haemophilus parasuis 29755]
          Length = 346

 Score = 50.6 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 53/124 (42%), Gaps = 2/124 (1%)

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNA 278
           I+++  G+ +     +A V   V  G ++ ++  IP  G+ I+   +++   +       
Sbjct: 204 IVSLLTGISIWVLLEIADVQYAVLWGTLSFLLNYIPNIGSIIAGVPIAVQAFLLNGFSVG 263

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMAL 337
             + +       ++   L P ++G  + L  L  F  L+     +G +G+ +  P+ MAL
Sbjct: 264 LGVSVGIIAINMVISNILEPRMMGRTLGLSTLIVFLSLLFWGWLLGTVGMLLSVPLTMAL 323

Query: 338 IAVI 341
              +
Sbjct: 324 KIAL 327


>gi|254466848|ref|ZP_05080259.1| conserved domain protein, putative [Rhodobacterales bacterium Y4I]
 gi|206687756|gb|EDZ48238.1| conserved domain protein, putative [Rhodobacterales bacterium Y4I]
          Length = 326

 Score = 50.6 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 55/333 (16%), Positives = 115/333 (34%), Gaps = 28/333 (8%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++  + + ++  ++YF K   AP + AL++G    P+           S      + + +
Sbjct: 1   MLLIITLIMLGGAMYFAKPVLAPGVFALVVGVVIAPLADRLERI--GVSRVAVASSLLLL 58

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
               +  L+      M  +   V K+    +  + +   L      + +    T   +  
Sbjct: 59  TTALLALLILSLDPLMTSLASQVPKIKYEIRGWLDMVSGLLRGIESISSEIEETIGAAEA 118

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            + +  +     T+ +   P           ++   +      LFFF      + ++  S
Sbjct: 119 DTEEEGTGLPTLTDALWLAP-----------NFGAQMFIFAGTLFFFVLTRNELYEKAGS 167

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                F            + +   F  +TI+  G GL+  +   L G+P     G+  AI
Sbjct: 168 YAARFF---------RAERAVARYFAAVTIVNGGLGLLTAAGLALIGLPGAWIWGLAAAI 218

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGPIKLPF 309
           +  I    P+   A      +         L     + + I + + + P  VG  + L  
Sbjct: 219 LNFILYLGPLMMLAGLTVAGLTQIGGAGAVLPPLVFLAINIAEAQFVTPAFVGRQLDLNP 278

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L  F+ +V G+   G +G      ++AL  V+W
Sbjct: 279 LIVFWAIVLGLWIWGPVG-----AIVALPLVLW 306


>gi|56552607|ref|YP_163446.1| hypothetical protein ZMO1711 [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241762148|ref|ZP_04760231.1| protein of unknown function UPF0118 [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260753738|ref|YP_003226631.1| hypothetical protein Za10_1509 [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|56544181|gb|AAV90335.1| protein of unknown function UPF0118 [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241373398|gb|EER62998.1| protein of unknown function UPF0118 [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258553101|gb|ACV76047.1| protein of unknown function UPF0118 [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 372

 Score = 50.6 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 95/292 (32%), Gaps = 15/292 (5%)

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++++C+ +   L    Y       +       +     +     +I   + ++ L + H+
Sbjct: 81  LAIVCICVAIFLAFTLYLA-----VYQLGGQLDALQATLTTQFINIRDWLVSNGLMSPHV 135

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           S     + L  +F + +   F+           +   + I   I    +           
Sbjct: 136 SSSDIAQRLFGSFGEVSA--FVGNALGAVSGGAMIMVIGIFVAIEPHLY-----ERGFAW 188

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  + +      + +I  I    +R    G  +    EG+         GVP    LG++
Sbjct: 189 MIPIAKR---PDFYRIFNIANNNLRRLMAGRLLGMAIEGVGTWLLLLATGVPMATLLGLL 245

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           T ++A +P    +    +   +    N+          AI   I    + P +    + L
Sbjct: 246 TGLLAFLPNIGALISGLLICLVGFSQNVQTGLWAMGVYAIVQTIDGYLIVPIVARRSVNL 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           P        +      G++GL +   L+A+  V  +E    + E +E    N
Sbjct: 306 PPALELGAQILLGALFGIMGLALADPLVAIAKVSLEEYSKIVTEREEHQQRN 357


>gi|78049634|ref|YP_365809.1| putative permease family protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78038064|emb|CAJ25809.1| putative permease family protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 368

 Score = 50.6 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/336 (12%), Positives = 109/336 (32%), Gaps = 18/336 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +    +  +L+  +    P++ A        PI                +I  +     
Sbjct: 33  VLATLAVGYTLWAAQTIILPIMLAAFFALIGNPILRGLRKLYIPRFLGALLILCLG---- 88

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               L                 V  A +    + R + D+   +  +    ++ +     
Sbjct: 89  ----LAGTVTLATQLAGPADEWVQQAPRQMRQIARDVRDLTKPVMQANQAAENFARAAGG 144

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           +      +    +D   +   R          S++ +++  FFF   G S+ +   +L  
Sbjct: 145 EGQRGVQIVRTQMDDPYKALVR----TPKLAASVLAVVLLTFFFMVYGESLQRHAIALLP 200

Query: 194 HLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH--VALGVITAI 250
           +     +  +I   + + +    L +++I    GLV      +  +P    +  G + A+
Sbjct: 201 NRQQQRFTTEIMLDIEREVSRYVLTISVINTLVGLVFAGILSVLQIPLPEAILWGTVVAL 260

Query: 251 MAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +   P   P+    + + +         ++    +       I  + + P ++G  + + 
Sbjct: 261 LNFAPYVGPLIGVMLMLLMGFVEFRTTLSSLLPAILYLALHTIEGQVVTPIVLGRRMAIS 320

Query: 309 FLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWK 343
            L     L+      G++GL +  P+L+ +  V+ +
Sbjct: 321 PLMLILALMLFGWLWGMVGLLLAVPLLVCIKMVLSR 356


>gi|146295508|ref|YP_001179279.1| Beta tubulin, autoregulation binding site [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409084|gb|ABP66088.1| Beta tubulin, autoregulation binding site [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 373

 Score = 50.6 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 58/341 (17%), Positives = 105/341 (30%), Gaps = 15/341 (4%)

Query: 14  WMIMFIILVSLYFLKGF----------FAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            +    I    Y +K F          F PVL  L I     P+      ++    T  A
Sbjct: 17  VLFAAFIFSCAYLIKAFDLFIRFILKAFIPVLIGLFIATVFEPVLKYLEKRRINR-TVSA 75

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++  V +  L    L    Y  + E   LVS +   +   I     L+ +   + +    
Sbjct: 76  ILILVILNVLLAFMLAEGIYILVNECLGLVSNLQNIDYDKIYAT--LNHLFSSVKSIYTD 133

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                       ++E     N +  +           L       F +++ FFF RD   
Sbjct: 134 LPRPIVSFIQSGVNEIANILNQVATMSLKVINVIPATLKGITIWFFSVLSSFFFMRDRHK 193

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +   L              ++  V   +        I+AI   L       +   P  + 
Sbjct: 194 MRAWLIQNFSAQVYKEMSSVAFKVIDSVVDYAKSQIILAILMFLSGLIGLSIIKAPYFLV 253

Query: 244 -LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              ++  +  +   G+ I      I   I GN      L +   I L + +      +V 
Sbjct: 254 ISLLLGLLSIIPIIGSGIILLPWIIGSFIAGNTSFGIKLLIVYLIILGLRE-FASIKIVA 312

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             + +    T   +  GV   G  G  IGP+L+  +  +++
Sbjct: 313 SQVGISTFTTLVSIYAGVEIFGAWGFIIGPLLVVFLKAVFE 353


>gi|251793230|ref|YP_003007958.1| PerM protein [Aggregatibacter aphrophilus NJ8700]
 gi|247534625|gb|ACS97871.1| PerM protein [Aggregatibacter aphrophilus NJ8700]
          Length = 351

 Score = 50.6 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 50/337 (14%), Positives = 115/337 (34%), Gaps = 21/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G++    + IIL  +        P L +L I     P+ +   SKK     +LA+ + +
Sbjct: 9   KGLVALAAIVIILAGIKAASEIAVPFLLSLFIAIICSPLLNYLTSKKV--PYWLAITSLL 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ +    L  L    + E  + + +                 +      + L      
Sbjct: 67  LLILVIFFFLFGLINSAIQEFSQSIPQY---------------RLLLAERVNSLVGLAQE 111

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               L I  ++ +       I  F  R  + F     +   +++ + F   +      + 
Sbjct: 112 MKIPLDISEKSIMDNFDPSVIMNFVRRVFLSFSGVVTNTFVLLLVVIFMLLEAPYAKHKF 171

Query: 189 DSLGEHLFPAYWKK--ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
                       ++      +   I S     T++++   + +     +AGV   +    
Sbjct: 172 VVAFSDDPNNVGQQELYLDRILNGIMSYLGVKTMMSLLTAICVWVLLEVAGVQYAILWAT 231

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++ ++  IP  G+ I+   + +  L+         + +   +    +   L P L+G  +
Sbjct: 232 LSFLLNYIPNIGSIIAAVPIIVQALLLNGFIVGLGVLVGVVVINVGIGSALEPRLMGKKL 291

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            L  L  F  L+     +G +G+ +  P+ MAL   +
Sbjct: 292 GLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMALKIAL 328


>gi|24644948|ref|NP_649756.2| CG2698, isoform A [Drosophila melanogaster]
 gi|23170697|gb|AAF54174.2| CG2698, isoform A [Drosophila melanogaster]
 gi|25012411|gb|AAN71313.1| RE12611p [Drosophila melanogaster]
 gi|220949462|gb|ACL87274.1| CG2698-PA [synthetic construct]
          Length = 817

 Score = 50.6 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 75/212 (35%), Gaps = 6/212 (2%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           I       G   +++ L +I    ALF+           L       + +   KI+  + 
Sbjct: 603 ILSLVLSGGQACIEFILDMIVFFTALFYLLSSSQEKYAPLQITKYLGYSSSGIKIADALE 662

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSI 267
             I    + M   +   GL     + + G         + A++A  P  G+        +
Sbjct: 663 NSITVVLVSMFRCSTFTGLFTWLVHTVFGARIVFLPSALAAMLAAAPFLGSYWCAVPAFL 722

Query: 268 YLLIKGNIFNA-TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
            L +  + F A   LFL         +  +   L GG            + GG+  +G  
Sbjct: 723 ELWLAQDRFYAGLILFLLQFFVPSSFETAIYADLKGG----HPYLNGLAIAGGMYWIGWQ 778

Query: 327 GLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           G   GP+++     +++ + +A++ ++E  +S
Sbjct: 779 GAIFGPLMLCFFIGLFEVATLAMRSHQEPRNS 810


>gi|118590999|ref|ZP_01548399.1| hypothetical protein SIAM614_20101 [Stappia aggregata IAM 12614]
 gi|118436521|gb|EAV43162.1| hypothetical protein SIAM614_20101 [Stappia aggregata IAM 12614]
          Length = 339

 Score = 50.2 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/314 (11%), Positives = 83/314 (26%), Gaps = 19/314 (6%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I   L   +    P + ALI+ +    +   F            +++    +       
Sbjct: 1   MIGWLLVVGRSLILPFVIALIVWYMINALAHVFAHIPLGRWRLPRLVSFSLALLTIFFAG 60

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
             +     + + +L               R L ++             +     L     
Sbjct: 61  TLVLDIVTVNLTQLAQDAPTYQ-------RRLEELFAQTSNHLHLNDPIELKDLLPDSIV 113

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             + T G   +   A              +  I  LF          +            
Sbjct: 114 PRMVTAGASLVTTLAGSAS----------LVFIYVLFLVLEQSTFDRKFERLFPSPERAE 163

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
               +   + + I   F   T +++  G++        G+P     G I  ++  IP   
Sbjct: 164 AAFAMRAEINRSIMHYFTIKTAVSVATGVLTSLVLIAIGLPYAALFGFIAFLLNYIPTIG 223

Query: 259 PI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
            +        + ++    +     +     +  F +   + P L+G  + L  L     L
Sbjct: 224 SLIGVIFPSLLAIVYYDTLGPFIAIATGLGLIQFTIGNLVEPRLMGSNLNLSGLVIMLSL 283

Query: 317 VGGVRTMGLLGLFI 330
                  G++G+ +
Sbjct: 284 AFWGAIWGVVGMVL 297


>gi|308273256|emb|CBX29859.1| AI-2 transport protein tqsA [uncultured Desulfobacterium sp.]
          Length = 205

 Score = 50.2 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 60/172 (34%), Gaps = 3/172 (1%)

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
            ++                +   +++ + F   +     ++L    ++  P         
Sbjct: 33  GWVMNLVGGIFSALSTVLTNTFLILLTVVFILLEAADFPKKLRIFLKN--PERALSAIEK 90

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
             +      +  T+I+   G+V+     + GV S +  G+++ ++  +P    I      
Sbjct: 91  FSRNANRYLVIKTLISATIGVVIWLWLLIIGVDSPLLWGMLSFLLNYVPNIGSIIAALPV 150

Query: 267 IYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
             L +      +  L + G + +  +V   + P L+G  + L  L  F  +V
Sbjct: 151 ALLALVQLGVGSALLTILGFVVVHIVVGNIIEPKLMGKGLSLSTLVVFLSMV 202


>gi|255528340|ref|ZP_05395147.1| protein of unknown function UPF0118 [Clostridium carboxidivorans
           P7]
 gi|296188342|ref|ZP_06856734.1| membrane protein, putative [Clostridium carboxidivorans P7]
 gi|255507964|gb|EET84397.1| protein of unknown function UPF0118 [Clostridium carboxidivorans
           P7]
 gi|296047468|gb|EFG86910.1| membrane protein, putative [Clostridium carboxidivorans P7]
          Length = 338

 Score = 50.2 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 68/191 (35%), Gaps = 4/191 (2%)

Query: 155 RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI--- 211
           +F      + ++II  ++   FF  +  ++ + L           +K +       +   
Sbjct: 140 QFITSLGKWGINIILALVLSLFFMLERTNVRRFLIKFKTSRISIMYKYVVLFWKDFLVFF 199

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLL 270
                   +IA+   ++      +   P  +AL  +  I ++IP  G  ++   +SI   
Sbjct: 200 GKVVQLQMLIAVTNSILSLIMLSVMNFPESIALAFMIFIFSLIPIVGIIMALIPLSIIAF 259

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             G +     +     +   + +  L P  +    K+P    F  L+     MG+ GL +
Sbjct: 260 NIGGMIKVIYVISMIVLLYAVENYVLTPQFMSSKTKIPVFFVFIVLIISQHFMGMWGLLV 319

Query: 331 GPVLMALIAVI 341
           G  L   I  +
Sbjct: 320 GIPLFMFILHM 330


>gi|148239692|ref|YP_001225079.1| permease [Synechococcus sp. WH 7803]
 gi|147848231|emb|CAK23782.1| Predicted permease [Synechococcus sp. WH 7803]
          Length = 359

 Score = 50.2 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 58/159 (36%)

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L    +    + I       + S  +G+ I +    ++ G    L GV   VA  ++ 
Sbjct: 187 IQLVPSFYRRRARTILLQCGDALSSWMIGVLISSFCVAVLAGIGLTLLGVKLVVANALLA 246

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++ +IP   P   T   + + +    + A  + +   +   +    + P ++   + L 
Sbjct: 247 GLLNVIPNVGPTLSTVFPMSVALVDAPWKALAVLVLYVVIQNVESYVITPSVMQHQVNLL 306

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              T           G LGL +   L  ++ V+ +E ++
Sbjct: 307 PGLTLTAQFIFTVLFGPLGLLMALPLAVVLQVLIREIVI 345


>gi|167537930|ref|XP_001750632.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163770928|gb|EDQ84605.1| predicted protein [Monosiga brevicollis MX1]
          Length = 683

 Score = 50.2 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 78/242 (32%), Gaps = 10/242 (4%)

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDF-IPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            LW       ++   +        G+       AS F +    Y   ++   I  +    
Sbjct: 362 SLWKDMSILQEAAMTVINALQDPVGLGLQFALTASNFLLKIGAYSSQLVAFFIFFYEMTS 421

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
                 + +  +     P    +I   +   I ++F     +A    ++  ++Y L G+P
Sbjct: 422 AEEDPLESVVRVMLPASPRSRDRILGQIQAAIVASFQIPLAMASVHAMITLTSYSLLGIP 481

Query: 240 SHVALGVITAIMAMI----PGGAPISF-TAVSIYLLIKGN----IFNATCLFLWGAIELF 290
                  ++  +++     P   P  +  A+ +  LI G     +     L     +   
Sbjct: 482 FTYFATFLSFFLSLTYIVNPLAVPAIWACAIGVPPLITGTNYFALLRGLLLLAAHILAYS 541

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            +D  +        +      T F +V G    G  GL +GP+   L+ VI+   +    
Sbjct: 542 FMDARVFQLEEARGLTHNPGLTIFAVVLGYYAFGTQGLIVGPLAFYLLTVIYNLRLQVSH 601

Query: 351 EN 352
           E 
Sbjct: 602 EQ 603


>gi|327439242|dbj|BAK15607.1| predicted permease [Solibacillus silvestris StLB046]
          Length = 322

 Score = 50.2 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/332 (12%), Positives = 102/332 (30%), Gaps = 28/332 (8%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            I+L+  + L  F  P++  L   +  +P++  F  + +       +   + V+ L +  
Sbjct: 17  IIVLLLYFILFYFIPPIIFGLFFAYLLFPVFLFFKQQFK-------LPFFLVVIILSVFL 69

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
              +    ML +   ++ +       + +       P   +  E     +          
Sbjct: 70  FSVVVSVIMLIIHSFITILPQLQSTLLSLDSTYMKHPLLPFIVEKLQSFIRD-------- 121

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
                      +  +   F              I+  +F   + +       +     + 
Sbjct: 122 -----------LLFYTINFIKNSFQSIFEFFIFIVTFYFALMESYKNRLWFFAYIPKAYR 170

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG- 256
             W +  +   ++I    +    +     ++L   ++     + V    + A    +P  
Sbjct: 171 TTWARYFQKGMELIGRFIVVEMQLFTLTFILLCIGFYFLKFEAFVIKAFLIAFADCLPFL 230

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           G  I    VSIY  I         + +   +   ++ +     L    + L  + TF   
Sbjct: 231 GIGIFLIPVSIYYFIVDEPMIGIAILVLYFMVQ-MIRQLTESMLWSHTLHLRMIHTFLIS 289

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
              V   G  G+ + P+L+ +   + + +I A
Sbjct: 290 AASVLLFGFYGIILSPILLMIAIKVKQHAIFA 321


>gi|159184523|ref|NP_353922.2| hypothetical protein Atu0902 [Agrobacterium tumefaciens str. C58]
 gi|159139830|gb|AAK86707.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 386

 Score = 50.2 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 44/338 (13%), Positives = 110/338 (32%), Gaps = 17/338 (5%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + + + +  ++ L     PV+ A+++G           S     +    +++T+    +F
Sbjct: 57  IFLIMSMAVIHELSMILMPVVMAVVVGMILGISAEKLASYGIPGAGVALILSTLVAAVIF 116

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            V            +  L+  V      G  +     D       +  W    +   S+ 
Sbjct: 117 FV------------VNSLIDPVSQLATEGPALIERSIDRFLPYVQNLRWLNISAATFSMG 164

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
            +S   L +   + I    +      +     +IF+   L F Y         +      
Sbjct: 165 SMSMESLISRSGEIITLLGANVTPAIVQ---GLIFLAALLMFLYSRLRLRKALIMVFPAR 221

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                  +I   V KV+ + F   ++I    G+ +    ++ G+   +  G+   + + +
Sbjct: 222 HQRLRTIRIIGSVEKVLGTYFATASLIYAALGVTMIVIAYVGGLSMPLLWGLFAFLSSFV 281

Query: 255 P--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P  G   ++ +     ++   N+  A            +++    P +VG  +++     
Sbjct: 282 PFLGITLMTISLTIAGIIAHDNMILALLPAGVFFTIHLLMENLAFPAVVGRNMEINPFLV 341

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           F  ++      G  G  +   L  +   + +E   + +
Sbjct: 342 FVMIIFWTWMWGAAGAMLALPLSLIAMTVTRELFPSRR 379


>gi|157165001|ref|YP_001466916.1| hypothetical protein CCC13826_0123 [Campylobacter concisus 13826]
 gi|112800273|gb|EAT97617.1| transport protein [Campylobacter concisus 13826]
          Length = 338

 Score = 50.2 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 46/339 (13%), Positives = 106/339 (31%), Gaps = 22/339 (6%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M     I+      ++   L        P L A+ I   + P  ++    K        V
Sbjct: 1   MRTGNAIIYLASFVVVAAGLKTASVVVLPFLMAVFIAIVATPAINALEKLKFPR-----V 55

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +A   +  +  + L F+    +  +  LVS +                       ++ + 
Sbjct: 56  LAFALITAVVFLSLGFIANTVIKTINGLVSYMPELQSKF-------------KALADHYH 102

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           + L+    +   S        I+ I      F     +      F+ + + F   +    
Sbjct: 103 QMLASRGLIDPESIAAPADFDINKIFAVLGGFLRSGTELVSKSFFVFLLVTFMLFEVQVF 162

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           SQ+++            +I       ++      +  +   G+ +       GVP     
Sbjct: 163 SQKVEYFASK--NPQTNQIVDTFISNLKRYLAIKSAASFATGVFIFIGLNFIGVPYAPLW 220

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           G++  ++  IP  G+ I+     +  L+  +  +             ++   + P  +G 
Sbjct: 221 GILAFVLNFIPTIGSIIAAVPALLVALLLNDAASCAWTAALYLAVNTVIGNFIEPKFLGK 280

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            + +  L     L+      G+ G+F+  P+ M+L   +
Sbjct: 281 GLGISTLVVLLSLLFWGFLFGIGGMFLAVPLTMSLKIAL 319


>gi|54025251|ref|YP_119493.1| hypothetical protein nfa32820 [Nocardia farcinica IFM 10152]
 gi|54016759|dbj|BAD58129.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 373

 Score = 50.2 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 49/302 (16%), Positives = 94/302 (31%), Gaps = 21/302 (6%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
                 PV  AL++     PI               A +     +      +L L    +
Sbjct: 51  FADILGPVFLALMLTIAVQPI-----QGFARRHGLPAWVGMALAVVTAYAIVLGLLVILV 105

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
           +   +L +++   +     +   L  +             L+          T L    +
Sbjct: 106 ISTAQLATELPNYSGRFDDMLDGLRSV-------------LADRGVGGEEIRTMLSDIDV 152

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +                ++ F++  L F   DG SI ++   L             R 
Sbjct: 153 RQVVSVLETTLSGLAGVLSALAFVLALLLFMAVDGLSIDRRARILTAE--RPAIATALRS 210

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAV 265
                R   +  T+  +   +  G A W  GVP  +   V++ +   IP  G  +     
Sbjct: 211 FAIGTRRYLVVSTVFGLIVAVFDGLALWWLGVPLPLLWAVLSFVTNFIPNVGFVVGLVPP 270

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++  L+ G       + L  ++  F++   ++P  VG  + L    TF  L+     +G 
Sbjct: 271 ALLALLAGGPALMIWVVLLYSVINFVIQSVIQPKYVGDAVGLSVTVTFLSLIFWTWVLGA 330

Query: 326 LG 327
           LG
Sbjct: 331 LG 332


>gi|126463756|ref|YP_001044869.1| hypothetical protein Rsph17029_2996 [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105567|gb|ABN78097.1| protein of unknown function UPF0118 [Rhodobacter sphaeroides ATCC
           17029]
          Length = 414

 Score = 50.2 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 79/213 (37%), Gaps = 5/213 (2%)

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            + + +  +        ++   A++ G +      +++ ++   F F    +   + L+ 
Sbjct: 157 DAEEAVLSSLRAVEISGYLRTLAAQAGTLM---QATVLVILFVGFLFAERVWFPVKLLNL 213

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
            G        ++I   +   +    L  T+++   GL++       G+     LG++T I
Sbjct: 214 FGNPDRARRVEEIVSSIMHRVNRYLLVKTLVSAITGLLVWGVAMAFGLDLAAPLGMLTFI 273

Query: 251 MAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +  IP    I      V +  +   ++  A  +     +  F+    L P L+G  ++L 
Sbjct: 274 LNFIPSLGSIVATLLIVLVTFVQTVDVSTALSVLALVGVIQFVCGNILDPMLMGRALQLS 333

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                  L       G+ G+F+   +M  + ++
Sbjct: 334 SFGIIISLAFWGAIWGIPGMFLSVPIMVGLMIV 366


>gi|225452324|ref|XP_002272633.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 680

 Score = 49.8 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 76/212 (35%), Gaps = 12/212 (5%)

Query: 137 SETFLKTNGIDFIPRFASRFGMI---FLDYCLSIIFMIIALFFFYR-DGFSISQQLDSLG 192
           S T + T G + +   A          L++   ++  +  L++    D   +   +  + 
Sbjct: 451 SGTMVLTGGANMLFSMAVLIVSGAAELLNFISQLMVFLWLLYYLITTDSGGVMDHVLGML 510

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L  +   + ++++   + S  L    +A+ +G      +    +        +  + +
Sbjct: 511 P-LSKSTRDRCAQVLDNAVSSVLLASAKVALFQGCFTYLLFRFYCIHFLYMSTFLAVMSS 569

Query: 253 MIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++P   A +S    +  L ++     A  L     I L      ++  + G         
Sbjct: 570 VLPITPAWLSSIPAAAQLAMEAKYIEAISLTAIHLILLDYGTTAIQDEIPGQNA----YL 625

Query: 312 TFFGLVGGVRTMG--LLGLFIGPVLMALIAVI 341
           T   ++GG+      L G  +GP+LM ++  +
Sbjct: 626 TGLSILGGIALFPSVLEGAIMGPLLMTVMIAL 657


>gi|325292278|ref|YP_004278142.1| hypothetical protein AGROH133_04693 [Agrobacterium sp. H13-3]
 gi|325060131|gb|ADY63822.1| hypothetical protein AGROH133_04693 [Agrobacterium sp. H13-3]
          Length = 394

 Score = 49.8 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 44/345 (12%), Positives = 113/345 (32%), Gaps = 23/345 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
            GI   ++M +I      L      ++  +I+G  +        S     +    +++ +
Sbjct: 63  IGIFLVVMMAVIHELSLILIPVVLAIVVGMILGIAA----EKLSSYGIPGAGVAVILSGL 118

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHL 127
               +F     F+    +  + +L S+     +  +     +L  I     ++  ++   
Sbjct: 119 VAAVMF-----FVINSLIDPLSQLASEGPALIERSMDRFLPYLQSIRWLNISAATFSMGS 173

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              +SL   S   +   G +  P                +IF+   L F Y         
Sbjct: 174 ISMESLISRSGEIISLLGSNVTPAVVQ-----------GMIFLAALLMFLYSRLRLRKAI 222

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + +           +I   V +V+ + F    +I    G+ + +  +  G+   +  G+ 
Sbjct: 223 IMAFPARHQRLRAIRIIASVEEVLGTYFATAALIYAALGVTMVAIAYFGGLAMPLLWGLF 282

Query: 248 TAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
             + + +P  G   ++ +     ++   N+  A            +++    P +VG  +
Sbjct: 283 AFLSSFVPFLGITAMTVSLAVAGIITHDNMVLALLPSAIFFTIHLLMENLAFPAVVGRNM 342

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++     F  ++      G  G  +   L  +   + +E   + +
Sbjct: 343 EINPFLVFVMIIFWTWMWGAAGAMLALPLSLIAMTVTRELFPSRR 387


>gi|298710977|emb|CBJ32284.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 466

 Score = 49.8 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 49/379 (12%), Positives = 117/379 (30%), Gaps = 57/379 (15%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSW-----------PIYSSFISK 54
            + + +  WM+  ++L     L+ F+  +L   ++ +               +      +
Sbjct: 59  DDTKKLGAWMLFALVLSR---LRYFYGVMLGTFVMSYMGNSAIEVCMRKGNNLLKRAGER 115

Query: 55  KEESS-------TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
                       +  A +  + +M +     + +     +E + LV K+   +     + 
Sbjct: 116 LGWKRLPKKLPRSGYASVYILLLMTVITSLTVIIAPRLTVESQILVQKLSEQDNPYAIIA 175

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFG---------M 158
            W+    G    + L    LS       +   +  ++ +    +   +            
Sbjct: 176 SWMRSNFGEEALARLEPFLLSVTGDQGRIFAGYPDSSLVTIASKLQDKAAWGEQRYARFA 235

Query: 159 IFLDYCLS-----------------------IIFMIIALFFFYRDGFSISQQLDSLGEHL 195
             L +CLS                        +  ++  F    D  ++ + + +L    
Sbjct: 236 KLLQFCLSDYFKKGLNMCSTVVGDLTKVLYKAMVSLLFSFMVIWDLPNLRRGVTALKTSR 295

Query: 196 FPAYWKKIS---RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
               +  IS    I  K++  +F     IA+   ++  +     GV   + L  I  + +
Sbjct: 296 LSFAYNTISPQVSIFAKLVGQSFEVQFTIAVINTILTTAGLIALGVSGPLVLSFIVFLCS 355

Query: 253 MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +P  G  IS   +++  L    +     + L       +    L P +    +KL  + 
Sbjct: 356 FVPVVGVFISTLPMAVAALGDYGMSKVFQILLMIFGVHAVEAYFLNPQIYASKLKLHPVV 415

Query: 312 TFFGLVGGVRTMGLLGLFI 330
               L      +G+ GL +
Sbjct: 416 VIGVLYVAEHLVGVQGLIM 434


>gi|218514990|ref|ZP_03511830.1| putative transmembrane permease protein [Rhizobium etli 8C-3]
          Length = 407

 Score = 49.8 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/346 (11%), Positives = 109/346 (31%), Gaps = 17/346 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +  +   + L ++Y +     P+  A+++G     + +  +SK        A + +  V
Sbjct: 74  AIIGIFAILGLAAVYMMSLILIPITLAVVVGMIL-GLAAENLSKMGVPRLANAFLLSSGV 132

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             +  +    L         E  +         +P    +            W       
Sbjct: 133 ALVIALLANSLASPLATLANEAPAFFERTIARIMPYLERIE-----------WLHITPAT 181

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                +S   L  N  + +    +      +   +    +++ L             + +
Sbjct: 182 FESGPMSIGALLENTGNVLHVVTTSLTPALVQGLIFFAALLLFL---ASRVNLRKTIIMT 238

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                      ++   V +V+   F   ++I +G G+V+    + +G+ + V  G    +
Sbjct: 239 FRTRTQRLAAIRVINAVEQVLGFYFATASLIYVGLGVVMTIIAYASGLSAPVLWGFFAFL 298

Query: 251 MAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            + IP  G   ++ +     ++                    I++  + P ++G  +++ 
Sbjct: 299 SSFIPYLGITLMTLSVAIAGIITYDGFIVGLMPAAAFFTVHLIMENIIFPAVMGRRLEIN 358

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
               F  ++      G +G  +   L  ++  I +E ++  +   +
Sbjct: 359 PFIVFLAILFWTWMWGAVGAMLALPLSLIVMTIIEELLIEERPQPQ 404


>gi|119385679|ref|YP_916734.1| hypothetical protein Pden_2954 [Paracoccus denitrificans PD1222]
 gi|119376274|gb|ABL71038.1| protein of unknown function UPF0118 [Paracoccus denitrificans
           PD1222]
          Length = 444

 Score = 49.8 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 43/356 (12%), Positives = 119/356 (33%), Gaps = 30/356 (8%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + + ++       + F  PV  A+++ F   P +   + +    +   A I ++ ++   
Sbjct: 33  IFVILLFSFFAQARSFLMPVTLAILLFFVFIP-FRRLMERLGIGAVITAAIVSLGLVVAV 91

Query: 75  IVPLLFLFY----------YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW- 123
           ++    +                 +++  +++    +        + +I GG  +     
Sbjct: 92  VLIGFVISGPANRLIENAPQITQRLEQRFTEIRSNFRGLERAAEKIDEIAGGSSSPPEPA 151

Query: 124 ---------------TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII 168
                             +  P + +   +               +    +       II
Sbjct: 152 APPGEAPPDATLTGTLSAIPAPGAPQPPDQQIQVEVNATPETSTLASALNLGPALVGQII 211

Query: 169 FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI-SRIVPKVIRSTFLGMTIIAIGEGL 227
           F +  LFF    G  +  ++    + +       +  R +   + +    +T+I    G+
Sbjct: 212 FTLFLLFFLISSGDLLYLKIVQSFDSMREKRAAYLALREIEDSLGTYLGAITLINACLGV 271

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWG 285
            +G A W  G+PS V  G+   ++  IP    +     A  + + +  ++F    + L  
Sbjct: 272 AIGLAMWAWGMPSPVLFGLAAFLLNFIPYLGSVAGIIIATLVGVFVFDDLFAPLMVGLTY 331

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                +  + + P+ V   ++L  +  F  +        ++G+ +   L+ ++ V+
Sbjct: 332 LAITALEGQLITPYFVSRRLQLNTVVVFLTVALWAWLWSVIGMIVAVPLLVVMRVL 387


>gi|225386463|ref|ZP_03756227.1| hypothetical protein CLOSTASPAR_00210 [Clostridium asparagiforme
           DSM 15981]
 gi|225047432|gb|EEG57678.1| hypothetical protein CLOSTASPAR_00210 [Clostridium asparagiforme
           DSM 15981]
          Length = 352

 Score = 49.8 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 49/135 (36%), Gaps = 2/135 (1%)

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           +F   +  I + +    ++ F    II     ++        G P ++  G+   ++  +
Sbjct: 201 VFRREFAMIGKRIVHTGKAWFKTQGIILSLITMLCILGMAAIGNPYYIMAGIGIGVLDAL 260

Query: 255 P-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P  G        S+  L  G    A  LF    I  +++ + L   L+   + L  L T 
Sbjct: 261 PIFGTGTVLIPWSLICLFMGRWGRALALFALYLIC-YLIREYLETKLMSNQVGLSPLETL 319

Query: 314 FGLVGGVRTMGLLGL 328
             +  G++  G  G 
Sbjct: 320 AAVYVGLQLFGFPGF 334


>gi|16331348|ref|NP_442076.1| hypothetical protein slr0784 [Synechocystis sp. PCC 6803]
 gi|1001519|dbj|BAA10146.1| slr0784 [Synechocystis sp. PCC 6803]
          Length = 340

 Score = 49.8 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/309 (10%), Positives = 87/309 (28%), Gaps = 11/309 (3%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +     + ++     +  A+++      +     +           I  ++V    ++
Sbjct: 13  LAMAAYVAWEIRQLLLLLFLAIVLSTALNRLVKQLQTW-GIKRPLALAITLITVTVAVVL 71

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             L +      +++ L+  +               +     W   +  K  S   S+  L
Sbjct: 72  FFLLVIPPFWEQLQILIGSLPKVGDRL--------ENFFEDWHDRMEVKFFSQAFSVDDL 123

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            ++                     +   L IIF++           +  Q    L    +
Sbjct: 124 PDSISALGANAL--SSLINLFSNSVTAVLQIIFILAIAVMMLLSPQAYRQGTLKLFPSFY 181

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                +I       + +   G+ I +     + G   W+  +   +   ++  I+  IP 
Sbjct: 182 RRRADEILTQSESSLGNWLTGIVINSFFIASLSGIGLWILQIKLVLVHALMAGILNFIPN 241

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             P +     + + +    +    + +   +   +    L P ++   + L    T    
Sbjct: 242 IGPAASVVFPLMIAVLDAPWKIIAVLILYFLIQNVESYWLTPIVMAKQVSLLPAVTLIAQ 301

Query: 317 VGGVRTMGL 325
           +      GL
Sbjct: 302 LFFASIFGL 310


>gi|307106824|gb|EFN55069.1| hypothetical protein CHLNCDRAFT_134947 [Chlorella variabilis]
          Length = 1171

 Score = 49.8 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 41/131 (31%), Gaps = 5/131 (3%)

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            L  A  ++ +  + + +    +    +    G      + +  +P      V +A  A+
Sbjct: 834 PLSEAGRQRTAMALNRALGGVLVSSMKLIAFHGCFSWITFRVMNLPLTYTASVASAACAL 893

Query: 254 IPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +P              LL +G +  A   F    +  +I D  +    +           
Sbjct: 894 LPFVPTYAVALPGCAVLLAQGRLLAAVLFFALHFMGYYIGDTVI----LEDIPGGHPYML 949

Query: 313 FFGLVGGVRTM 323
             G++GG+   
Sbjct: 950 SLGILGGIYAF 960


>gi|170078184|ref|YP_001734822.1| hypothetical protein SYNPCC7002_A1575 [Synechococcus sp. PCC 7002]
 gi|169885853|gb|ACA99566.1| conserved hypothetical protein (PF01594) [Synechococcus sp. PCC
           7002]
          Length = 402

 Score = 49.8 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 49/349 (14%), Positives = 112/349 (32%), Gaps = 20/349 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK------------KEESSTF 61
           ++++   L  L+ +K F   +L+A+I+      +     +                  +F
Sbjct: 9   FIVLLSSLYILWQIKAFLLLLLTAVILANALNVLVVKLQTWGDRLADRFNQPLLRMGRSF 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
               A   V  +  + L  +    + + + L SK+   N     +  WL      +   E
Sbjct: 69  AVFTALFIVALILWLALTIVIPPFIGQFQILFSKL---NTGFYEIDEWLDS--QILKIEE 123

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            +   +S            + T   + + R  S F          ++  ++ L  F  D 
Sbjct: 124 NFGLPISEQLPNLDEIIPQISTLLNELLNRGWSLFSDSLKVLLNVLLLTVLTL-MFLADP 182

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               Q    L    +     +I  +    ++    G+    +  G++        G+   
Sbjct: 183 QPYRQGFIRLFPSFYRRRADEILTLCDADLKGWVSGIMFNMLCIGVLSYVGLLTLGLSLA 242

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +   ++  ++  IP   P       I + +    +    + +   +   +    L P+++
Sbjct: 243 LPQAILAGLLTFIPNIGPALSVIPPILIALLEAPWKIWAVLILYFLIQQVEGNVLTPWVM 302

Query: 302 GGPIKLPFLPTFFG--LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
              + L    T     L      +G  GLF+   L  +  VI +E ++ 
Sbjct: 303 ARQVSLLPAVTLLAQVLFAVTLQLGFFGLFLALPLAVIGQVIVREVLVK 351


>gi|110679720|ref|YP_682727.1| hypothetical protein RD1_2476 [Roseobacter denitrificans OCh 114]
 gi|109455836|gb|ABG32041.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
          Length = 374

 Score = 49.8 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 59/351 (16%), Positives = 128/351 (36%), Gaps = 24/351 (6%)

Query: 11  IMRWMIMFI-ILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           I R +++ + +   ++ +K     F P++ AL++G    P+ + F      +   +  +A
Sbjct: 15  IARVVLVVVGMAAFVWLMKAGTHIFMPLIFALVVGVVFAPLTNFFQKL--GAPPVVGALA 72

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++   I+  +++FY    E    +  + L           L D+  G   +    ++
Sbjct: 73  VLIIVMSSIIAGVYIFYPVAAEFALRIPIMWLE----------LRDVISGFRTTIENVEN 122

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD---YCLSIIFMIIALFFFYRDGFS 183
           + +  +  +      +      +         I      +   I+  +  L+FF      
Sbjct: 123 MQNQVAQSLAPGASPEEATASAVEVSVPSVTDILSHLPAFAAQIMIFVGILYFFLLTRIE 182

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + +  D     +     ++I       +   FL +T I +  G+++       G+P+ + 
Sbjct: 183 LYKYADVSSLSIS----EEILYRAEADVSRYFLTITGINVSFGVLVALVLSAYGMPNAIY 238

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK-TLRPFLVG 302
            GV   ++  +    PISF AV +           + L     I + + +   + P LVG
Sbjct: 239 WGVGAFLVNYVLYLGPISFAAVLLLGGFVVFDGPMSFLPALTYILMNMTEGQFVTPSLVG 298

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             + +  L  F  LV  +   G LG  I   L+     + KE   A+    
Sbjct: 299 KQMSVNPLLVFLSLVFWLWMWGPLGGVIAIPLLVWFRQVNKEIRTALMREP 349


>gi|72381974|ref|YP_291329.1| hypothetical protein PMN2A_0134 [Prochlorococcus marinus str.
           NATL2A]
 gi|72001824|gb|AAZ57626.1| conserved hypothetical protein [Prochlorococcus marinus str.
           NATL2A]
          Length = 358

 Score = 49.8 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 75/207 (36%), Gaps = 8/207 (3%)

Query: 143 TNGIDFIPRFASRFGMIFLD--YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           T+ I  +    S  G+  L   + +S+  MI      YR      +    L    +    
Sbjct: 145 TDSITKLVGLVSNVGIGILQLIFIISVGLMITLQPQSYR------EVAILLVPSFYRRRA 198

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           + I       + S   G+ + +I   +++    ++ G+   +A  +I  ++ +IP   P 
Sbjct: 199 RTILLRCGNALSSWMAGVLLSSICVAILVSIGLYILGIKLVIANALIAGVLNVIPNVGPT 258

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
             T   + + +    + +  +     I   I    + P ++   +KL    T        
Sbjct: 259 ISTIFPLSVALLDTPWKSLAVLGLYIIIQNIESYVITPSIMHKQVKLLPGLTITAQFIFT 318

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIM 347
              G LGL +   +  +I V  KE I+
Sbjct: 319 IIFGPLGLLLAIPMAVVIQVFVKEIII 345


>gi|282857112|ref|ZP_06266358.1| conserved domain protein [Pyramidobacter piscolens W5455]
 gi|282585047|gb|EFB90369.1| conserved domain protein [Pyramidobacter piscolens W5455]
          Length = 353

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 67/211 (31%), Gaps = 16/211 (7%)

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                 +I   +     I     + I+F++  LF     G    +           A   
Sbjct: 121 GGALRSYIIALSGSIVTILSKTVMVIVFLMFILF-----GSPYVEYKMRKAFPQKSAQVM 175

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPI 260
            I   +   I      MT+I+   G+++       GV      GV+   +  IP  G+ +
Sbjct: 176 NILDSISTQIGRFLSVMTLISGATGILIWLGLSWIGVDFAPTWGVLAFFLNFIPTVGSIV 235

Query: 261 SFTAVSIYLLIKGNIFNATCLF----------LWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +     +  +++     A+ +F                   +   + P ++G  + L  +
Sbjct: 236 ASVPPILISIVQFYPAAASAVFGIPPQVFMTIGVILAVQVTIGNIITPKVMGDSMNLSPV 295

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                L+      G+ G  +   +  +I +I
Sbjct: 296 MILVSLLLWGWLWGVAGALLSMPIAGIIKII 326


>gi|67922408|ref|ZP_00515919.1| Protein of unknown function UPF0118 [Crocosphaera watsonii WH 8501]
 gi|67855752|gb|EAM51000.1| Protein of unknown function UPF0118 [Crocosphaera watsonii WH 8501]
          Length = 347

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 45/339 (13%), Positives = 116/339 (34%), Gaps = 18/339 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIG-FTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           ++I+   +  L+ ++     + +A II  F +  +    + +      +  + + + ++ 
Sbjct: 9   FVILAFCIYLLWKIRELLLLLFTAAIIANFLNHGVQ--LLQRMGMKRGYAVLSSILLLLA 66

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           +       +      ++ EL   V L     I     +S               L   Q 
Sbjct: 67  ILSAFFWLIIPPFAEQLPELFKLVALGIDQLI-----ISTKDFISRLDPKLIDALPTNQE 121

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           +    +  LK      +  F +  G+      L  +  ++       +  +  Q    L 
Sbjct: 122 IIEPLQPLLKKIAGQGLLVFYATLGIPLTLLLLFALTFMLLA-----NPSAYRQGFIRLF 176

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
              +      I +   + ++     +    +   L+      +  +P  +A  ++  I+ 
Sbjct: 177 PSFYRPKINHILKECDRSLQGVLTSILFQMVMISLLSFIGLSILSMPLTLAQAMLAGILT 236

Query: 253 MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGA--IELFIVDK-TLRPFLVGGPIKLP 308
            IP  G  +S        L++ +  + T   L+    I + +++   L P ++     + 
Sbjct: 237 FIPNIGPVLSLIPPVTIALLENSWKSVTVFILYIIFYIVIQMIENKLLTPLVIKNRKSIL 296

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              T    V      G+LG F+  + +AL++ +W + ++
Sbjct: 297 PALTLLSQVFFASFFGVLGFFLA-LPLALVSQVWLKEVL 334


>gi|298717114|ref|YP_003729756.1| hypothetical protein Pvag_pPag30015 [Pantoea vagans C9-1]
 gi|298361303|gb|ADI78084.1| UPF0118 inner membrane protein yhhT [Pantoea vagans C9-1]
          Length = 343

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 51/339 (15%), Positives = 103/339 (30%), Gaps = 21/339 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + IIL  LY        VL A ++     P+ +    K+        ++ T+ +M + + 
Sbjct: 22  LTIILTGLYLAAPLINQVLLAALLAIMLDPLITRLDKKRIPRIISSLLVITLMLMVMVVT 81

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L                           + +     P  + A             + + 
Sbjct: 82  TLKLTALT-------------------PDLMQLSRQAPMLLAARLEQLTLAFARLDIGMT 122

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +  L       I R  + F           I + + L F   +   +   L        
Sbjct: 123 PDQMLTFVDAGAIVRIVTAFLTQIPGVISWWIMVFLMLLFMLYEMPLLKAALQQRVSGKN 182

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
            A++  +   +  VI       T+ +I  G+++G    L G+      GV+  I   +P 
Sbjct: 183 QAFYLALQEGIESVI-VYARVKTLTSILGGIIVGLGAHLIGLKFAFFWGVLMFIFNYVPV 241

Query: 257 -GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ ++     I   I  ++  A  +  +  +    +   + P L+G  + L        
Sbjct: 242 LGSFLAAIPPVIQSYIMFDLQVALAVSGFFMVLNLCLSSVIEPLLIGKRLNLALTTQLLA 301

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            +     +G+ G  +   L  LI  +   S        E
Sbjct: 302 FLFWQALLGITGGILAIPLTYLIKKVLLASYPQQDPESE 340


>gi|291459199|ref|ZP_06598589.1| putative sporulation integral membrane protein YtvI [Oribacterium
           sp. oral taxon 078 str. F0262]
 gi|291418453|gb|EFE92172.1| putative sporulation integral membrane protein YtvI [Oribacterium
           sp. oral taxon 078 str. F0262]
          Length = 369

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 80/224 (35%), Gaps = 2/224 (0%)

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +   + + +  +        L           +           + ++  I++ F F +D
Sbjct: 125 DQLNRIIDNLIANSDAYGEELIGRLSSPAFSASLDLVKSVPTLLVYLVVTILSGFCFCKD 184

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G    ++L  L    F  Y+  + +   K++    L    I     L+L + ++L  +P 
Sbjct: 185 GERYLKRLRELLPERFRRYFSLLRQDAWKILHGWLLANLEIMALVFLLLSAGFFLLRIPY 244

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            + + +  A +  +P  G            L+      A    L   +   +V + L+P 
Sbjct: 245 GILIALFIAFLDFLPLFGVGFILWPWIALELLSQRFMEA-FWLLLLYLMTQLVRQFLQPK 303

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           ++G  + LP L T   L  G +  G+ G+     L  L   +++
Sbjct: 304 IMGDAMGLPPLLTLLFLYLGFKFYGIGGMIFAIPLGMLFLSLYR 347


>gi|254504159|ref|ZP_05116310.1| conserved domain protein, putative [Labrenzia alexandrii DFL-11]
 gi|222440230|gb|EEE46909.1| conserved domain protein, putative [Labrenzia alexandrii DFL-11]
          Length = 355

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/319 (10%), Positives = 86/319 (26%), Gaps = 19/319 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             ++ ++   L   +    P + A+I+ +    + + +      +     ++A    +  
Sbjct: 12  VFLISMVGWLLVVGRSLLLPFIIAIIVWYMINALSNVYRRIGYGNFHLPGLVAFPLALLT 71

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
                 F+     + + +L               R L ++             +      
Sbjct: 72  IFSVSTFVLDIVAVNLTQLAQDAPTYQ-------RRLEELFTQAADLFHLNDPVELRDLF 124

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                  + T G   +   A              +  I  LF          +       
Sbjct: 125 PDSVVPRMVTAGASVVTAIAGSAS----------LVFIYVLFLLLEQSTFDRKFEKLFAT 174

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                    I   +   +   F   T +++  G++        G+P     G I  I+  
Sbjct: 175 PERAKAAFAIRAEINSSLMHYFTIKTAVSVATGVLTSLVLIAIGLPYAALFGFIAFILNY 234

Query: 254 IPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           IP    +        + ++    +     +     +  F +   + P L+G  + L  L 
Sbjct: 235 IPTIGSLIGVIFPSLLAIVYYDTLGPFLIIATGLGLIQFSIGNLIEPRLMGANLNLSGLV 294

Query: 312 TFFGLVGGVRTMGLLGLFI 330
               L       G++G+ +
Sbjct: 295 IMLSLALWGAIWGVVGMVL 313


>gi|221378295|ref|NP_001138024.1| CG2698, isoform B [Drosophila melanogaster]
 gi|220903028|gb|ACL83483.1| CG2698, isoform B [Drosophila melanogaster]
          Length = 810

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 73/209 (34%), Gaps = 6/209 (2%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           I       G   +++ L +I    ALF+           L       + +   KI+  + 
Sbjct: 603 ILSLVLSGGQACIEFILDMIVFFTALFYLLSSSQEKYAPLQITKYLGYSSSGIKIADALE 662

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSI 267
             I    + M   +   GL     + + G         + A++A  P  G+        +
Sbjct: 663 NSITVVLVSMFRCSTFTGLFTWLVHTVFGARIVFLPSALAAMLAAAPFLGSYWCAVPAFL 722

Query: 268 YLLIKGNIFNA-TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
            L +  + F A   LFL         +  +   L GG            + GG+  +G  
Sbjct: 723 ELWLAQDRFYAGLILFLLQFFVPSSFETAIYADLKGG----HPYLNGLAIAGGMYWIGWQ 778

Query: 327 GLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G   GP+++     +++ + +A++ ++E 
Sbjct: 779 GAIFGPLMLCFFIGLFEVATLAMRSHQEP 807


>gi|159485428|ref|XP_001700746.1| hypothetical protein CHLREDRAFT_127052 [Chlamydomonas reinhardtii]
 gi|158281245|gb|EDP07000.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 204

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 66/185 (35%), Gaps = 4/185 (2%)

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS---RI 206
            ++   F      + L  +  +I  F F  D   IS+ + SL        + +++    +
Sbjct: 10  AKYTGLFLKSVAKFSLQALVSLILGFLFVWDMPRISRGISSLATSRLAPVYNEVAPMLLV 69

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAV 265
             ++          IA+    +  +  WL  +P    L +   + + IP  G  IS   +
Sbjct: 70  FGQLFGKALQVQAQIAVVNTALTAAGMWLLAIPGIGLLSLFVFLCSFIPIMGCIISTVPI 129

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
               L +        + +  A+  F+    L P +    +KL  L     L+     +G+
Sbjct: 130 GFVALTEYGFVKLAMVIVMVAMVHFVEAYALNPAIYSAHLKLHPLMVLSVLLIAEHNLGV 189

Query: 326 LGLFI 330
            GL +
Sbjct: 190 WGLLL 194


>gi|297623501|ref|YP_003704935.1| hypothetical protein Trad_1269 [Truepera radiovictrix DSM 17093]
 gi|297164681|gb|ADI14392.1| protein of unknown function UPF0118 [Truepera radiovictrix DSM
           17093]
          Length = 376

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 41/305 (13%), Positives = 96/305 (31%), Gaps = 13/305 (4%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
              L+FL    A +L+A++       +    + +       L ++  +     F+V    
Sbjct: 34  AWLLFFLAYGIAYLLNAVVGA-----LERRRVPRWGGMVLALLLLLVLFTAASFVV---- 84

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI--PGGMWASELWTKHLSHPQSLKILSE 138
                + +M E V++V             L+++        S          QS  + S 
Sbjct: 85  --AGFIQQMSEFVARVPDLGAQLSAWYAALNELQRFVPPPLSAFAEGLGRGAQSGALESA 142

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                     +   A       +   +  + ++    F   D    ++ L       + A
Sbjct: 143 LSALGESAVRLSTGAFFALTGLVGGVVQAVVLLFLTAFLLLDFDGFNRALLRAVPERYRA 202

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              +++    + +   F G  +++    L + +   L GVP  + +  +  +  ++P   
Sbjct: 203 QVLELAAKADRSVGGYFQGRLVVSFIVALCIWAGMVLLGVPLALGIAFLAGVFNLVPFLG 262

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           PI     +  L +     +     L      F+    L P ++   +++  L     +V 
Sbjct: 263 PIIAFIPAGLLALTLGWVHLLATALIFTAANFLDGNVLSPVILSRTVQVHPLVVLLSVVV 322

Query: 319 GVRTM 323
           G    
Sbjct: 323 GASAF 327


>gi|116695476|ref|YP_841052.1| permease [Ralstonia eutropha H16]
 gi|113529975|emb|CAJ96322.1| Permease [Ralstonia eutropha H16]
          Length = 411

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 46/342 (13%), Positives = 118/342 (34%), Gaps = 24/342 (7%)

Query: 14  WMIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +++   L SLY +   + F  PV+ A+++ +   P+  +   +          +  ++V
Sbjct: 64  ALVVLATLFSLYAVHIAREFLIPVVLAIVLAYLLDPLVCAL-QRLGLPRALAGTVVLLAV 122

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +      LL   Y    +++ +V+ +    +    + R +  +  G     +W K     
Sbjct: 123 LSA----LLSGAYLLQGQVESIVNSLP---ETASKLSRSVGALMSGD--DSMWQKVRRAA 173

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI-------IALFFFYRDGFS 183
             L    +          + +  ++   + L   +SI  M          L+F    G +
Sbjct: 174 TVLSGTGQPPPARGTQVVVEQAPAQIHNMLLAGSVSIFTMAGQAVVVVFLLYFLLLAGDT 233

Query: 184 ISQQLDSLGEHLFPAYW--KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             ++   +  H          +   V + IR     + +     G          GV + 
Sbjct: 234 FKRKFIKMVGHTISEKKISVHMLDEVNRSIRRYMGMLLVTNTALGACTWLLLKWLGVHNA 293

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  +  A + ++P  GA      + +   ++ G +  A    +   +   ++   +  +
Sbjct: 294 GSWAIAAAALHLVPYFGALAIAVCLGVVTFMQFGTLGMAAAATVGSLLIATLIGSVVTTW 353

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           + G   ++  +  F  L+      G+ G+ +   L+ +  V+
Sbjct: 354 MTGRMARMNAVAVFVALLLFTWLWGVWGMLLAIPLITIAKVV 395


>gi|284929683|ref|YP_003422205.1| putative permease [cyanobacterium UCYN-A]
 gi|284810127|gb|ADB95824.1| predicted permease [cyanobacterium UCYN-A]
          Length = 346

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/159 (11%), Positives = 52/159 (32%)

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
                L   L ++F+ I       +          L    +     +I  +    + +  
Sbjct: 141 IFSNSLTIILQLVFIFILTIMMILNPHRYRHIFLKLFPSFYRQRGDEILTLSENALGNWL 200

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNI 275
           +G+ +  +  G + G   W   +   +   ++  ++  IP   P++     + + +    
Sbjct: 201 IGIVVNCLFIGTLSGLGLWFLQIRLVLVHALLAGLLNFIPNIGPVTSVIFPLMVALLDEP 260

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           +    + LW  +   +    L P ++   + L  + T  
Sbjct: 261 WKIGAIILWYIVIQNVESYWLTPLVMAKQVSLLPVVTLI 299


>gi|123966243|ref|YP_001011324.1| permease [Prochlorococcus marinus str. MIT 9515]
 gi|123200609|gb|ABM72217.1| Predicted permease [Prochlorococcus marinus str. MIT 9515]
          Length = 347

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 45/341 (13%), Positives = 113/341 (33%), Gaps = 5/341 (1%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
            ++ ++ I  + ++ L+ F   ++ +L+I      + +   S  +    F  +I    + 
Sbjct: 7   FKFAVVIISFLIVWTLRDFLLLIICSLVISNVVSNLCNQIQSILKLPRFFSLLIVIFGIS 66

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKV----VLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
            +  +  + +    + E  E++  +       N          +D+  G  +  +     
Sbjct: 67  FIIFIISILVLPPFVREFNEILIDIPNGLSKINVLINSNLNKFNDLLYGEESENVVDIFS 126

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                + I     +     +                 + IIF+++  F    +  +  + 
Sbjct: 127 LVNDVVPIPDGATIAKAIQESFVNII-NLAGNLGTGLIRIIFVLVVSFMISIEPKAYKEG 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  +   ++    + I       + +    + I ++  GL+      +  V   V+  +I
Sbjct: 186 VLLIVPKVYRNKSRIILDKCNVALTNWTFSIVISSLSVGLLSLIVLSILDVKYVVSNAII 245

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
              + +IP   P+      + + +  N +    +F    I   I    + PF++     L
Sbjct: 246 AMTLNIIPNIGPVLSGIFPVSIALLDNFWKPVAVFGAYIIIQNIESYVIMPFILKKKTNL 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
               T     G     G LGL +   +  +  V+ KE I  
Sbjct: 306 LPGLTLISQFGLTFIFGPLGLVLSLPIAVVTQVLIKEIINE 346


>gi|119952812|ref|YP_945021.1| hypothetical membrane spanning protein [Borrelia turicatae 91E135]
 gi|119861583|gb|AAX17351.1| hypothetical membrane spanning protein [Borrelia turicatae 91E135]
          Length = 357

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 45/320 (14%), Positives = 111/320 (34%), Gaps = 27/320 (8%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             ++ +++  L   +  F P+  A+++GF  +PIY+     K              V+ +
Sbjct: 23  IALIVMLIAILKIAQTIFKPLAIAVVLGFLVYPIYTFLKKLKIPR-----------VLIV 71

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           F++  +   +  ++      S  VL +Q      + +  +   +   +L +  +S     
Sbjct: 72  FVIFFVLFSFSYLVFSFVYYSVTVLIDQLPYYQKQLIFIMVDILEKYKLDSAIIS----- 126

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                     +   +I  F +R     + +  S++ + + L+F   +      ++ +  +
Sbjct: 127 --------TIDFSKYIYPFLTRISNEIIGFASSLVVLFLLLYFLLSEIHIFDIKVKNAFK 178

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
               + + +    +   I         ++   G ++     L G        V+T +   
Sbjct: 179 QSVSSIFIEALSTINSQISKYLGIKLFVSCLTGFLVFIGLKLFGQDFPRVWAVLTFVFNF 238

Query: 254 IPGGAPIS---FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           IP    I    F  ++  +    N+     +F++      ++   L P + G  + L   
Sbjct: 239 IPSIGSILAVFFIMIAALVQFYPNLNLVFYIFIYNTFVQMLIGNILEPKMQGHRLDLSPF 298

Query: 311 PTFFGLVGGVRTMGLLGLFI 330
                L       G++GL I
Sbjct: 299 LLLCFLFFWGWLWGIVGLLI 318


>gi|82545837|ref|YP_409784.1| hypothetical protein SBO_3471 [Shigella boydii Sb227]
 gi|81247248|gb|ABB67956.1| conserved hypothetical protein [Shigella boydii Sb227]
          Length = 305

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 98/285 (34%), Gaps = 22/285 (7%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +    + ++  V +
Sbjct: 41  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRPVTITIVVVVML 100

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +      L  L         E +S +   N+                       + +   
Sbjct: 101 IA-----LTALVGVLAASFNEFISMLPKFNKELT--------------RKLFKLQEMLPF 141

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + +  F +   +       S++ +++ + F   +   +  ++  
Sbjct: 142 LNLHMSPERMLQRMDSEKVVTFTTALMIGLSGAMASVLLLVMTVVFMLFEVRHVPYKM-R 200

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+  +
Sbjct: 201 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGVIVWLGLALMGVQFALMWAVLAFL 259

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           +  +P  GA IS     I +L+   ++    +     +   ++D 
Sbjct: 260 LNYVPNIGAVISAVPPMIQVLLFNGVYACILVGALFLVVHMVIDH 304


>gi|209548467|ref|YP_002280384.1| hypothetical protein Rleg2_0864 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534223|gb|ACI54158.1| protein of unknown function UPF0118 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 388

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 43/339 (12%), Positives = 108/339 (31%), Gaps = 17/339 (5%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            + L ++Y +     P+  A+++G           S+        A + + SV  +  + 
Sbjct: 62  ILGLAAVYLMSLILIPITLAVVVGMILGMAAEKL-SRMGVPRLANAFMLSSSVALVIFLV 120

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +  L    M    E  +         +P    +            W            +S
Sbjct: 121 INSLAGPLMTLANEGPAFAERTINRVMPYLERIE-----------WLHITPATFESGPMS 169

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              L  N  + +    +      +   +    +++ L             + +       
Sbjct: 170 IGALLENTGNVLHVVTTSLTPALVQGMIFFAALLLFL---ASRVNLRKTIIMTFRTRTQR 226

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-- 255
               ++   V +V+   F   ++I +G G+V+    +  G+ + V  G    + + IP  
Sbjct: 227 LAAIRVINAVEQVLGFYFATASLIYVGLGVVMTVIAYAGGLAAPVLWGFFAFLSSFIPYL 286

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
           G   ++F      +L   +I               +++  + P ++G  +++     F  
Sbjct: 287 GITLMTFAVAVAGILTHDDIVIGLMPAAAFFTVHLVMENLIFPAVMGRRLEINPFVVFLA 346

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           ++      G +G  +   L  ++  I +E ++  K   +
Sbjct: 347 ILFWTWMWGAVGAMLALPLSLIVITIIEELLIEEKPQPQ 385


>gi|167390786|ref|XP_001739501.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165896774|gb|EDR24101.1| hypothetical protein EDI_198900 [Entamoeba dispar SAW760]
          Length = 140

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 56/138 (40%), Gaps = 5/138 (3%)

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCL 281
           I +  +    + LA +P  +   +I A++A++P  +  I +    + L  +GN       
Sbjct: 7   IFKFTLTFVTFSLAHLPYKMVCSIICALLAILPAFSNMIVWLPAGLVLFFQGNTTGMIWF 66

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
               A+  FI+D     +       +        +V GV   G+ G  +GP++  +   +
Sbjct: 67  ISVHAVTYFIIDG----WFYSFIPDIIPYFVGLSVVFGVYVFGITGCVLGPLVFVMTMTL 122

Query: 342 WKESIMAIKENKEKISSN 359
               I+  +  K+KI  +
Sbjct: 123 KDIFILQNQRLKQKIKQD 140


>gi|300785154|ref|YP_003765445.1| hypothetical protein AMED_3253 [Amycolatopsis mediterranei U32]
 gi|299794668|gb|ADJ45043.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
          Length = 336

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 63/173 (36%)

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
             S             + +++   +F  D   I   L  L           I   V + +
Sbjct: 135 QLSDVAKSLAALLGDAVIVVVLATYFVADFPRIRTALYRLAPRSRRPRVILIGDAVFRKV 194

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
            +  +G   +++  G    +     GVP  + L V+ A++ ++P    ++  A +  + +
Sbjct: 195 GAYLVGNVAVSLIAGAATFAWLSAFGVPYPLVLAVLVAVLDLVPVAGSVAAGAGTTLVAL 254

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             ++        +      + D  L P +VG  +++P L T   ++ G   +G
Sbjct: 255 TVSVPVGLATLGFFVGYRVVEDYVLLPKIVGRAVRIPALVTVVAVLLGYALLG 307


>gi|320107388|ref|YP_004182978.1| hypothetical protein AciPR4_2182 [Terriglobus saanensis SP1PR4]
 gi|319925909|gb|ADV82984.1| protein of unknown function UPF0118 [Terriglobus saanensis SP1PR4]
          Length = 162

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 53/145 (36%), Gaps = 10/145 (6%)

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISF 262
           +R     +   +   T+ A+  G +      L  VP      +I A    +PG G  +S 
Sbjct: 16  ARRAGAALLGWWRATTLDALIVGAMWLVGLLLIHVPLAPMWAMIAAFCQFVPGIGTSLSV 75

Query: 263 TAVSIYLLIKGN------IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
              +I      +      ++    L+ +  I   +    ++P L+    ++P+     G 
Sbjct: 76  CGPAISAAFASSDTDFDKLWWVLGLYAFIVIVDGL---VIQPMLLKRTTRVPWWAALLGP 132

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVI 341
           + G   +   G  + P ++A++   
Sbjct: 133 IVGGILLPPWGALLAPPVLAVVYAF 157


>gi|312794387|ref|YP_004027310.1| sporulation integral membrane protein ytvi [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181527|gb|ADQ41697.1| sporulation integral membrane protein YtvI [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 370

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 64/360 (17%), Positives = 117/360 (32%), Gaps = 24/360 (6%)

Query: 1   MRETMLNPQGIMRWMIMFI---ILVSLYFLKGF----------FAPVLSALIIGFTSWPI 47
           MRE   N   +    ++ I   I    Y +K F          F PV+  L I   S P+
Sbjct: 1   MREFTKNRFVVAMIYVILISAFIFSCAYLIKTFDLFVRFVIKAFIPVIIGLFIAEVSEPL 60

Query: 48  YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
                 +K  S T  A++  + +  +    L    Y  + E   LV+ +   +   I   
Sbjct: 61  LKYLEKRKV-SRTISAILILIVLNIILGFMLAEGIYILVNECMSLVASLQNIDYDKIY-- 117

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
                +     + +     L  P    I S     TN ++ I   + +   +       I
Sbjct: 118 ---QALDKLFASVKNIYSGLPGPIVNFIQSGVDELTNVLNQIATMSLKVIKVIPATLKGI 174

Query: 168 IF---MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
                 +++ FFF RD   +   L              I+  V   +        I+A+ 
Sbjct: 175 TVWFFSVLSSFFFMRDRHRMRAWLIQNFSAHLYRELSSIAFKVIDSVVDYAKSQIILAVL 234

Query: 225 EGLVLGSAYWLAGVPSHVA-LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
             L       +   P  +    ++  +  +   G+ I      +   I G+      L +
Sbjct: 235 MFLSGLIGLSIIKAPYFLVISLLLGLLSIIPIIGSGIILLPWIVGSFITGDTNFGLKLLI 294

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              I L I +      +V   + +    T   +  GV   G  G  IGP+L+  +  +++
Sbjct: 295 VYLIILGIRE-FASIKIVASQVGISTFTTLVSIYAGVEIFGAWGFVIGPLLVVFLKAVYE 353


>gi|241203730|ref|YP_002974826.1| hypothetical protein Rleg_0992 [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857620|gb|ACS55287.1| protein of unknown function UPF0118 [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 396

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/339 (12%), Positives = 104/339 (30%), Gaps = 17/339 (5%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            + L ++Y +     P+  A+++G           S+        A I + SV  +  + 
Sbjct: 70  ILFLAAVYLMSLILIPITLAVVVGMILGMAAEKL-SRMGVPRLANAFILSSSVALVIFLL 128

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +  L    M    E  +         +P    +            W            +S
Sbjct: 129 INSLADPLMTLANEGPAFAERTINRVMPYLERIR-----------WLHITPATFESGSMS 177

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              L  N  + +    +      +   +    ++  L             + +       
Sbjct: 178 IGALLENTGNVLHVVTTSLTPALVQGLIFFAALLFFL---AGRVNLRKTIIMTFRTRTQR 234

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-- 255
               ++   V +V+   F   ++I +G G+V+    +  G+ + V  G    + + IP  
Sbjct: 235 LAAIRVINAVEQVLGFYFATASLIYVGLGVVMTVIAYAGGLSAPVLWGFFAFLSSFIPYL 294

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
           G   ++       +L    +               +++  + P ++G  +++     F  
Sbjct: 295 GITLMTLAVAVAGILTHDGLLIGLMPAAAFFTVHLLMENLIFPAVMGRRLEINPFVVFLA 354

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           ++      G +G  +   L  ++  I  E ++  K   +
Sbjct: 355 ILFWTWMWGAVGAMLALPLSLIVMTIIDELLIEEKPQPQ 393


>gi|78184848|ref|YP_377283.1| hypothetical protein Syncc9902_1275 [Synechococcus sp. CC9902]
 gi|78169142|gb|ABB26239.1| conserved hypothetical protein [Synechococcus sp. CC9902]
          Length = 329

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/172 (12%), Positives = 53/172 (30%)

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
           F     +  + +  M++       D  +  + L +           ++       +    
Sbjct: 130 FAGGAANTLIQLFLMVLLAILLALDPSAHRRMLLAACPRPAREQLDQLLDECRHALGGWL 189

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNI 275
            GMT+ A    L+      +   P  +   ++  ++  +P   P + T +   L +  + 
Sbjct: 190 SGMTLSATIVFLLTWGGLLVLKAPLALLSALVCGLLTFVPTIGPTAATLLPTGLALLQSP 249

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
                + ++  I   +    L P L+   + L               +GL G
Sbjct: 250 QLMVSVLVFRLILQNLEAFLLTPLLLRKTVNLLPTVALMAQFSLGALLGLPG 301


>gi|92117758|ref|YP_577487.1| hypothetical protein Nham_2235 [Nitrobacter hamburgensis X14]
 gi|91800652|gb|ABE63027.1| protein of unknown function UPF0118 [Nitrobacter hamburgensis X14]
          Length = 395

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 58/203 (28%), Gaps = 8/203 (3%)

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +H          S + + +  +  I    S  G  F+   L + F        YR G   
Sbjct: 170 QHNLPSAGALASSGSAIVSQTLKLILGTVSAVGNFFIVLFLGLCFAAQPT--LYRKG--- 224

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              L  +      A    +   +   +    +   +      LV      + G+ S   L
Sbjct: 225 ---LLGMAPAKHRAAATILVDRIGDTLERWLIAQMVTMAAVFLVTWIGLEIIGIQSSFIL 281

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           G+   ++A IP    +    + +   +          F+       +    L P +    
Sbjct: 282 GIQAGLLAFIPTIGALLGGLIVVLASLASGWVAGASAFVLFLGVHALESYILTPIIQRQA 341

Query: 305 IKLPFLPTFFGLVGGVRTMGLLG 327
           + +P    F   +      G+ G
Sbjct: 342 LDIPPATLFAFQILLGVVFGVWG 364


>gi|218662617|ref|ZP_03518547.1| putative transmembrane permease protein [Rhizobium etli IE4771]
          Length = 389

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 63/169 (37%), Gaps = 2/169 (1%)

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + +           +I   V +V+   F   ++I +G G+V+    + +G+ + V  G  
Sbjct: 218 IMTFRTRPQRLAAIRIINAVEQVLGFYFATASLIYVGLGIVMTIIAYASGLSAPVLWGFF 277

Query: 248 TAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
             + + IP  G   ++ +     ++                    +++  + P ++G  +
Sbjct: 278 AFLSSFIPYLGITLMTLSVAIAGIITYDGFIVGLMPAAAFFTVHLVMENIIFPAVMGRRL 337

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           ++     F  ++      G +G  +   L  ++  I +E ++  +   +
Sbjct: 338 EINPFIVFIAILFWTWMWGAVGAMLALPLSLIVMTIIEELLIEERPQPQ 386


>gi|255322255|ref|ZP_05363401.1| transport protein [Campylobacter showae RM3277]
 gi|255300628|gb|EET79899.1| transport protein [Campylobacter showae RM3277]
          Length = 338

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/339 (13%), Positives = 106/339 (31%), Gaps = 22/339 (6%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M     I+      ++   L        P L A+ I   + P  ++    K        V
Sbjct: 1   MRTGNAIIYLASFVVVAAGLKAASVVVLPFLMAVFIAIVATPAINALEKLKFPR-----V 55

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +A   V  +  + L F+    +  +  LVS +                       ++ + 
Sbjct: 56  LAFALVTAVVFLSLGFIANTVLKTINGLVSYMPELQSKF-------------KALADHYH 102

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L+    +   S        I+ +      F     +      F+ + + F   +    
Sbjct: 103 HILASRGLIDPNSVAAPADFDINKLFAVLGGFLRSGTELASKSFFVFLLVTFMLFEVQVF 162

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           SQ+++            +I       ++      +  +   G+ +       GVP     
Sbjct: 163 SQKVEYFASK--NPQTNQIVDTFISNLKRYLAIKSAASFATGVFIFIGLNFIGVPYAPLW 220

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           G++  ++  +P  G+ I+     +  L+  +           A+   ++   + P  +G 
Sbjct: 221 GILAFVLNFVPTIGSIIAAVPALLVALLLNDAAACAWTAALYAVVNVVIGNFIEPKFLGK 280

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            + +  L     L+      G+ G+F+  P+ M+L   +
Sbjct: 281 GLGISTLVVLLSLLFWGFLFGIGGMFLAVPLTMSLKIAL 319


>gi|170034868|ref|XP_001845294.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167876587|gb|EDS39970.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 838

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 61/198 (30%), Gaps = 8/198 (4%)

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +    + + +   L  + I  +       G   L +    I     LF+  +       +
Sbjct: 595 ADSLWMLLRTNLTLLASAIGTLVSVILGGGHAVLKFLFHTIIFFTTLFYLLQSSQ---DR 651

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
               G  +  ++  +I + +   I S  +    +A+  GL     + + G        V+
Sbjct: 652 YAPTGITINNSWGPRIIQALEDSISSVVVATLKLALFHGLFTWLTHTIVGAHIVYLPAVL 711

Query: 248 TAIMAMIPGG-APISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            +I+A  P            + L +  + F     L L   I     +  +   + GG  
Sbjct: 712 ASILAAAPFLETYWCSVPAFLDLWLSQDRFWLGAFLVLVHFIVPSNFNPIIHSEIKGGG- 770

Query: 306 KLPFLPTFFGLVGGVRTM 323
                 T   + GG+   
Sbjct: 771 --HPYLTGLSIAGGMYLF 786


>gi|184200636|ref|YP_001854843.1| hypothetical protein KRH_09900 [Kocuria rhizophila DC2201]
 gi|183580866|dbj|BAG29337.1| hypothetical membrane protein [Kocuria rhizophila DC2201]
          Length = 393

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 64/188 (34%), Gaps = 1/188 (0%)

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           ++I M + L+F +    +I      L      A    +   +   + +  +G   +A+  
Sbjct: 207 TLIVMALTLYFLFSW-PTIKAWCYRLAPASKRARVTHLGDRMINGVGNYVMGQACVALLN 265

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
             V      + GVP    L +  A++A IP    +        +   G         L  
Sbjct: 266 ATVAFILMSITGVPYASLLVLFVALLAFIPLVGGVIAGVFVSLVATLGGWNTVVPYALGY 325

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
              L +    + P ++   + +P       +  G    G+LG  I     A   ++ +E 
Sbjct: 326 FAYLQVEAYVISPRIMSRAVAVPGAVAIVAVAAGGALWGVLGALIAIPTAAAGLLLVREV 385

Query: 346 IMAIKENK 353
            +  ++ +
Sbjct: 386 FVPRQDAR 393


>gi|81427661|ref|YP_394658.1| putative transport protein [Lactobacillus sakei subsp. sakei 23K]
 gi|78609300|emb|CAI54346.1| Putative transport protein [Lactobacillus sakei subsp. sakei 23K]
          Length = 337

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/328 (13%), Positives = 110/328 (33%), Gaps = 33/328 (10%)

Query: 47  IYSSFISKKEESSTFLAVIATVSVMCLF-----IVPLLFLFYYGMLEMKELVSKVVLANQ 101
           +Y  F++ ++     + ++  + V+        I+ L F+F + + ++   V + V    
Sbjct: 3   LYQRFVANEQLRR-LVVLMGMIGVIFAVRSMMNIILLTFIFTFLVTQLVRHVQRYVRIPP 61

Query: 102 HGIPVPRWL-------------------SDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
             + VP ++                     I  G      +            L   ++K
Sbjct: 62  AAVVVPLYILVILLVYLGVTIYVPQIAKQTIKLGESVYNFYQSPSFDANKFMQLISQYMK 121

Query: 143 ----TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
               T+ +         +        ++I+   I  FF+  +   + Q      +  +  
Sbjct: 122 QFNLTDQLKHGVSTLVNYITGIGTMGVTIVLSFILSFFYTIELDKLPQFGGLFLKSTYGW 181

Query: 199 YWKKISRIVPKVIRS---TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
            ++ I+    K + +          IA+   ++      +  +P+  +L ++  +++M+P
Sbjct: 182 LFQDIAYFAKKFVNTFGVVIEAQIFIAVVNTVLTTITLTVMKMPNIPSLAIMIFLLSMVP 241

Query: 256 G-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G  +S   + I     G +     + +   +   +    L P  +    +LP   TF 
Sbjct: 242 VAGVILSCIPLCIIAFSVGGVQYVIYILVMITVIHALEAYVLNPRFMSSKTQLPIFFTFV 301

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            L    R +G  GL +G  +      + 
Sbjct: 302 VLFVAERFLGTWGLIVGLPIFTFFLDVL 329


>gi|114766630|ref|ZP_01445582.1| hypothetical protein 1100011001361_R2601_27308 [Pelagibaca
           bermudensis HTCC2601]
 gi|114541170|gb|EAU44223.1| hypothetical protein R2601_27308 [Roseovarius sp. HTCC2601]
          Length = 351

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/328 (12%), Positives = 92/328 (28%), Gaps = 19/328 (5%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
            I+  L+F +  F  +  A +I   +              +      A    + +FI  +
Sbjct: 20  FIIALLWFGRDLFKLLSVAFLIFVLATAFTDRLGRISIRGTAIPGWQARALALVIFITTI 79

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
                       E++  +    +    + + L  I G               Q+++   E
Sbjct: 80  WLFTVISSAAAAEIIDALPRYQERLGEIIQRLEHIIGARTV-----------QAVQTAIE 128

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                + I F+       G +        +  +  LF          +       +    
Sbjct: 129 ELQVGSLIMFLA------GGLVGSMAQVSLLTLYFLFLIVERADWQKKIRLLSSPNPRGP 182

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
            +  I R     I+       + +   G V    +   G+     L ++   +  IP   
Sbjct: 183 DFAVIVRRAASGIKDYMWVNAVTSAMSGSVAYVVFRAIGLDFAAFLAILIFFVGFIPNIG 242

Query: 259 PIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
                     + L    +++    + +       ++   + P + G  + +        L
Sbjct: 243 AFIGILLPALVALAQFDSLWPLLAVIVIYGGADQLISNVVTPMMQGRSLNMSTFMITVSL 302

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           V      G LG F+   L  ++ VI  E
Sbjct: 303 VFWSLLWGGLGAFLAVPLTVIVMVIASE 330


>gi|323137607|ref|ZP_08072684.1| protein of unknown function UPF0118 [Methylocystis sp. ATCC 49242]
 gi|322397233|gb|EFX99757.1| protein of unknown function UPF0118 [Methylocystis sp. ATCC 49242]
          Length = 347

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 62/335 (18%), Positives = 125/335 (37%), Gaps = 25/335 (7%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            + + +IL +    +    PV+ A+ I   +WP+  +  SK  +    +A+  TV V   
Sbjct: 13  IVAVLLILAACKVGQAVLEPVVFAIFIIEIAWPMQKTLRSKIGK---AMALALTVVVTAT 69

Query: 74  FIVPLLFLFYYGMLEMKELVS-KVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
             + LL +  +G  ++ E V   +    +  I    WL +                    
Sbjct: 70  LALALLSVIVWGGRQVAEWVGGNLDRIQESLISSTAWLEE---------------HDIFV 114

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +LS+ F     +  I   A R   I     + +I++++ L     +   ++ ++ +L 
Sbjct: 115 FALLSDHFDPATVVRMIHAMAIRANTIMAFAVIVLIYVVLGLG----EADILTGRIATLK 170

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                       R +    R+  L  T+ +I  GL +     L  +    A GV+   + 
Sbjct: 171 NQDASRRLIAAGRKIGVKFRTYMLVRTVASIATGLAVWGFAVLLHLEMAGAWGVLAFALN 230

Query: 253 MIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            +P  G+ I   A+ ++  ++ G+      + L  +    ++   L P   G  + +   
Sbjct: 231 YLPYIGSLIVTAALPLFAFVQFGSFETPLLVLLGISFIQAVIGSYLEPVFSGSALSISPP 290

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
              F +V      G LG F+G  LM     +++E 
Sbjct: 291 LVLFSIVLWTFLWGALGAFLGVPLMIAALTLFEEF 325


>gi|126657822|ref|ZP_01728975.1| hypothetical protein CY0110_13196 [Cyanothece sp. CCY0110]
 gi|126620762|gb|EAZ91478.1| hypothetical protein CY0110_13196 [Cyanothece sp. CCY0110]
          Length = 343

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/307 (13%), Positives = 99/307 (32%), Gaps = 10/307 (3%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + I    L+ ++     V +A++       +        +    +  +I  ++++ L I+
Sbjct: 12  LIISGYILWQIRQVLLLVFTAVVFATALNRLVKWLEQ-FKIRRNWGIIIVVITIIILAIL 70

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
               +    + + ++L++ +         V   L      +  ++     L  P +L  +
Sbjct: 71  FAWLVVPPFIDQFEKLLALL-------PTVWERLRTNLISLSETQSRFDWLPKPPTLSDV 123

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               L+    D    F        L   L ++F+                    L    +
Sbjct: 124 LTR-LQPLLTDIFANF-FTVFSNSLAIILQVVFVFFLTITMIIQPQRYRHLFLKLFPSFY 181

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                +I  +    + +   G+TI     G++ G   WL  V   +   ++  ++  IP 
Sbjct: 182 RKRGDEILTLSEVALGNWLTGVTINCFFIGILSGVGLWLLQVKLVLVHALLAGLLNFIPN 241

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             P +     + + +  N +    + +W  I   I    L P ++   + L    T    
Sbjct: 242 VGPATSVVFPLMVALLDNPWKIWAILIWYFIIQNIESYWLTPTVMAKQVSLLPAVTLVAQ 301

Query: 317 VGGVRTM 323
           +   +T 
Sbjct: 302 IFFAQTF 308


>gi|241766971|ref|ZP_04764767.1| protein of unknown function UPF0118 [Acidovorax delafieldii 2AN]
 gi|241362535|gb|EER58427.1| protein of unknown function UPF0118 [Acidovorax delafieldii 2AN]
          Length = 300

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 58/171 (33%), Gaps = 4/171 (2%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK--KISRI 206
           I  +     M  +     +  ++   +F    G  + ++L  +            ++   
Sbjct: 88  IRDYLWSGTMGLMSALGQLTVVVFLTYFSLASGNLVRRKLVRIAGTSLERKKVTMQVLNE 147

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           +   I+S  L     ++  G+  G A+W  G+ +     V   ++ + P    +  T  S
Sbjct: 148 ITAQIQSYLLLQVFTSVLVGIATGLAFWALGLENAAVWAVAAGVLNLAPYIGSVLVTGAS 207

Query: 267 --IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
             +  L  G +  A  +     +   IV + + P+L      +  +  F  
Sbjct: 208 ALVGFLQFGTLDMALAVGGASLVIHTIVGQLITPWLTSRASSMSPVAVFVS 258


>gi|271963472|ref|YP_003337668.1| permease-like protein [Streptosporangium roseum DSM 43021]
 gi|270506647|gb|ACZ84925.1| permease-like protein [Streptosporangium roseum DSM 43021]
          Length = 350

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 1/136 (0%)

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYL 269
            R   +  T+  +   ++  +A W+ GVP  +  GV+  I   IP  G  +     ++  
Sbjct: 194 TRRYLVVSTVFGLICSVLDVAALWMLGVPLPLLWGVLALITNYIPNLGFILGLIPPALLG 253

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           L++G       +        F+V   ++P  +G  + L    T   L+     +G LG  
Sbjct: 254 LLEGGPKTMIFVIASYIAINFVVQSLIQPKFLGDAVGLSTTMTLLSLLVWAFVLGPLGAL 313

Query: 330 IGPVLMALIAVIWKES 345
           +   L  L   +  +S
Sbjct: 314 LAIPLSLLARALLIDS 329


>gi|84517107|ref|ZP_01004463.1| hypothetical protein SKA53_03604 [Loktanella vestfoldensis SKA53]
 gi|84509002|gb|EAQ05463.1| hypothetical protein SKA53_03604 [Loktanella vestfoldensis SKA53]
          Length = 384

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 55/341 (16%), Positives = 117/341 (34%), Gaps = 30/341 (8%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFF-APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           Q     +I F +++ L     F    + +A+I+   +  + +    ++         IA+
Sbjct: 21  QTGALMIIAFAVVLFLLVQARFILISLATAIILFSLTSDVINFIARQRIGPLRIPNAIAS 80

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++ M L    LL L    + ++  ++   +   +                 AS       
Sbjct: 81  IAAMVLIATALLILTSVLLAQVNTVLVTTLAYTERAP-----------SAIASMFGWLSE 129

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            +  ++     +   T+ +      AS      +         +I LF  +     I   
Sbjct: 130 DNQAAIFNAVRSIDATSYLRSAAGQASGITQATV---------LIILFVGFLFAERI--W 178

Query: 188 LDSLGEHLFPAYWK--KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA---GVPSHV 242
            D+  E L     +  ++ +I+  +I      + +  +  G+     Y LA    +    
Sbjct: 179 FDTKLESLIGDKAQALRVRKIIQSIIHRVNYYLLVKTVISGITGAMVYALALAFQLELAT 238

Query: 243 ALGVITAIMAMIPGGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           ALGVIT ++  IP    I  T     +  +  G       +F+      F+    + P L
Sbjct: 239 ALGVITFVLNFIPNIGSILATGLIALVTHVQFGAPNTTLAIFVIATGIQFLNGNVIDPML 298

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +G  ++L        L       G+ G+F+   +M ++ V+
Sbjct: 299 MGRALRLSSFGIILSLAFWGAVWGVPGMFLSVPIMVMLLVV 339


>gi|157364495|ref|YP_001471262.1| hypothetical protein Tlet_1644 [Thermotoga lettingae TMO]
 gi|157315099|gb|ABV34198.1| protein of unknown function UPF0118 [Thermotoga lettingae TMO]
          Length = 334

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/337 (13%), Positives = 99/337 (29%), Gaps = 17/337 (5%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + I ++     + FF  VL   I       + S              VIA +      I 
Sbjct: 15  IAIFIILSLIYRNFFNTVLLTFIAVMIVDAVASFITRFLHVPKRIATVIALLIYFFALIW 74

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L+ +      ++ +    +    +       W   I      + L         +L   
Sbjct: 75  GLVMIVPNAFTQIADFYKLITDIIEKRT----WEQYINNEELINAL--------NALVDF 122

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            E  +       +   A+    + +    SI+  +    +       I Q +  L     
Sbjct: 123 IEPSIAQLANYLLREAAAHIPGVIVVLFFSILGAVYVSLY----AHHIVQVVPLLYPRKC 178

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                +    +   +R     + + A+  G+     +    +P    +     +   IP 
Sbjct: 179 RDGINEFLSELKINMRRFIGVIALNAVIVGIAFALLFRFMNLPYAPLIAFWAFLTNFIPI 238

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
              + F  + I+L             +  +I + +         + G  ++  +   F +
Sbjct: 239 -VGVIFEFIPIFLFSLSLGLTGMFWIITFSILIHLSVFIFFFEAMKGYARVNPVLMIFSI 297

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +      G +G+F G      + V +K+ I A  E++
Sbjct: 298 LITSEIFGPVGIFFGVPAAVFVVVFYKQFIKAQLESE 334


>gi|255563592|ref|XP_002522798.1| conserved hypothetical protein [Ricinus communis]
 gi|223538036|gb|EEF39649.1| conserved hypothetical protein [Ricinus communis]
          Length = 651

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 72/237 (30%), Gaps = 12/237 (5%)

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +  +   S+       + + G   I   A        ++    +     L++       
Sbjct: 424 QRVFASSASVLGGGAKLMFSVGNSIISGAAE-----VFNFVSQSMVFFWVLYYLITSESG 478

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
              +       +  +   +   ++   I    L    IA  +G +    + L  +     
Sbjct: 479 GVTEQVMQMLPIPKSASTRCVEVLDNAISGVLLATAEIAFFQGCLTWLLFRLYKIHFLYV 538

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
             V+  I  + P   +  +    ++ L I+     A  L +   + +      ++  + G
Sbjct: 539 STVLAFISPLFPIFPSWFATLPATLQLAIESRYIMAITLSIIHVVLMDYGASEIKEDIPG 598

Query: 303 GPIKLPFLPTFFGLVGGVRTM--GLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
                    T   ++GG+      + G  +GP++  ++  +       + E  +K  
Sbjct: 599 YS----EYLTALSILGGMTLFPSAVEGAIMGPLITTVVIALKDLYAEFVLEENKKND 651


>gi|50086462|ref|YP_047972.1| hypothetical protein ACIAD3504 [Acinetobacter sp. ADP1]
 gi|49532438|emb|CAG70150.1| putative membrane protein [Acinetobacter sp. ADP1]
          Length = 338

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 48/304 (15%), Positives = 107/304 (35%), Gaps = 22/304 (7%)

Query: 40  IGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA 99
           +  +  P    F ++K    T +A+ + V +  L ++ ++ L  Y + +++     +   
Sbjct: 42  LVTSLSPYVERFSNRKYGRVTVVAIFSIVIITLLVVL-MVSLSAYVVHDLRG--GGLSSV 98

Query: 100 NQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT---NGIDFIPRFASRF 156
           N +   + +      GG +   +         +L  LS+  L T    G D +  F +  
Sbjct: 99  NANLDVLLKKFQHEVGGYFPGFVPESIDEMKDTLLRLSKDHLITLQHAGTDVLHGFVTMI 158

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
             + L   +S+                 S++   L   +F      + R    ++ +   
Sbjct: 159 VGMILGALISL-------------HPHQSEKEMPLFRRVFLQRLDMLYRAFKNIVFAQVK 205

Query: 217 GMTIIAIGEGLVLGSAYWLAG--VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGN 274
              I  I  GL +  A  L G  +P    L ++T +  ++P    +    + +   I  +
Sbjct: 206 ISLINTILSGLFIFIALPLMGMHLPFGKTLVILTFVFGLLPVIGNLMSNTLVVLAAISVS 265

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
              A    ++  + +  ++  L   ++G  I          ++      GL+GL   P+ 
Sbjct: 266 FTTAAIALMY-LVLIHKLEYFLNADIIGQRINAKAWELLIAMLVFQAVFGLIGLVAAPIY 324

Query: 335 MALI 338
            A  
Sbjct: 325 YAYF 328


>gi|166365377|ref|YP_001657650.1| hypothetical protein MAE_26360 [Microcystis aeruginosa NIES-843]
 gi|166087750|dbj|BAG02458.1| hypothetical protein MAE_26360 [Microcystis aeruginosa NIES-843]
          Length = 349

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 83/259 (32%), Gaps = 4/259 (1%)

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
           + V    Q    +P+ +  + G + + E +             +        I+ I    
Sbjct: 78  ALVQQFRQLFSLLPQAIERLWGQVHSLEDYLDPSLASVLPDFKTLLAQLQPLINQIAGRG 137

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
                      LS++ ++        D  +  +    L    + +  + I     + +++
Sbjct: 138 LSIFYGTFGIILSLLLIVALGLMILADPAAYYRCFLRLFPAFYRSRVRSILEQCDRDLKA 197

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
              G+    +   L       L G+P   +  ++   +  IP   P+  T +   + +  
Sbjct: 198 WLKGIFCHMLIMTLGSCLGLSLIGIPLAFSQSILAGFLTFIPNLGPVLSTILPFSIALLE 257

Query: 274 NIFNATCLFLWGAIELFIVDKTLR----PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +    + L  +    ++    R    P L    ++L    T    +      G LGLF
Sbjct: 258 TPWQPWAVLLLYSSIYLLIQYFDRHSPLPILTVRSLRLLPAFTLLAQLFFASIFGFLGLF 317

Query: 330 IGPVLMALIAVIWKESIMA 348
           +   L  +  +  KE+++ 
Sbjct: 318 LAVPLALIGRIWLKEALIE 336


>gi|78185668|ref|YP_378102.1| hypothetical protein Syncc9902_2101 [Synechococcus sp. CC9902]
 gi|78169962|gb|ABB27059.1| conserved hypothetical protein [Synechococcus sp. CC9902]
          Length = 363

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 95/291 (32%), Gaps = 15/291 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
              F    ++A +I F         + +               +  + +V LL     G 
Sbjct: 31  FAPFPGLFITAALIAFLLDIPCRWLMGRGLPR-----------LPAITVVVLLTAGLLGF 79

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
             ++ L   VV  +Q     P  L+    G+   + W      P     LS   +    I
Sbjct: 80  AVVELLPLLVVQLSQLISAAPSLLTAAEQGINHGQAWAIAHGLPADFADLSSDLVSQ--I 137

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI-SR 205
             +    S+  +  L   +      + +          +  + +      PA W+++ + 
Sbjct: 138 SRVATQLSQRLLSILGATVGTSINTVIVLVLAVFLLLGADSITAGLAQWLPARWRELVTT 197

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + +  R  F G  ++A+         + +  +P  V   V+     +IP  + ++   V
Sbjct: 198 TLGRTFRGYFAGQVVLALILSGGQLLVFTVLEIPYGVLFAVLIGFSTLIPYASALTIVFV 257

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           S  L ++ +      L         IVD+ ++P L+G  + L        L
Sbjct: 258 SAILGVQ-DPRTGLELLAAAIAVGQIVDQVIQPRLMGSIVGLQPAWLLIAL 307


>gi|88813464|ref|ZP_01128699.1| hypothetical membrane spanning protein [Nitrococcus mobilis Nb-231]
 gi|88789254|gb|EAR20386.1| hypothetical membrane spanning protein [Nitrococcus mobilis Nb-231]
          Length = 100

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
              AT   +W  I +   +  L+P L+   I  P L    G  GG+   G++GLF+G V+
Sbjct: 8   TVVATIFMVWS-IIVSFSNAVLKPRLLNRGIDRPILVIRLGATGGMIMSGIIGLFVGAVV 66

Query: 335 MALIAVIWKESIMAIKENKEKIS 357
           + L   + +  + + + ++   +
Sbjct: 67  LTLGYKLIQTWLRSGEADEAATA 89


>gi|302811195|ref|XP_002987287.1| hypothetical protein SELMODRAFT_446935 [Selaginella moellendorffii]
 gi|300144922|gb|EFJ11602.1| hypothetical protein SELMODRAFT_446935 [Selaginella moellendorffii]
          Length = 713

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 80/259 (30%), Gaps = 21/259 (8%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I R  +   + + L+ L+ F   ++  +++        S           FL     V +
Sbjct: 436 IKRVCVWATVALVLFQLRDFVGVIMGTIVLSMIGNTFISWAEEYLPGRRRFLIATMYVVI 495

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW------LSDIPGGMWASELWT 124
           + +     +      + E   ++ ++ L N        +      L    G     +L  
Sbjct: 496 IAVLTGLGIMYIPRLLQEGANIIGRIQLFNFLQQSENPYSLLSEKLKSALGENVTDQLER 555

Query: 125 KHLSHPQSLKILSETFLKTNGIDFI-------------PRFASRFGMIFLDYCLSIIFMI 171
             L+  +   ++ E+         I               + +        + L     +
Sbjct: 556 FLLAVMRPDSVVRESMAGNTAQRSIIFQQLIKEYSGAMVAWLATLISATSRFALQSFVSL 615

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
           I  F F  D  S+   + SL +      +++I+ +    I +T LG     +    +L  
Sbjct: 616 IFSFLFVWDAPSVKAGIQSLKQTRLSVVYEEIAPV--DWILTTELGGFDAHLKLHPLLAL 673

Query: 232 AYWLAGVPSHVALGVITAI 250
              +    +    G+I A+
Sbjct: 674 GVLVFAEHALGVWGLIAAV 692


>gi|331663168|ref|ZP_08364078.1| putative permease [Escherichia coli TA143]
 gi|331058967|gb|EGI30944.1| putative permease [Escherichia coli TA143]
          Length = 73

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 31/58 (53%)

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            L+     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 1   MLIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQP 58


>gi|326389134|ref|ZP_08210714.1| hypothetical protein Y88_3510 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326206365|gb|EGD57202.1| hypothetical protein Y88_3510 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 414

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 53/314 (16%), Positives = 99/314 (31%), Gaps = 13/314 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P ++AL++     P+              LA I  + VM   I   L L       M 
Sbjct: 61  FQPPMTALVLSIVLSPLADRLTHI--GVPNMLASIVAILVMVAVIGISLLLILQPAFVMV 118

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           + V  +     H     R         W +E+  +      S    S   +       I 
Sbjct: 119 DSVPAMARVVAHRFAEVRE-----NLAWVNEVDRQISRVTGSFSNASPRPVTLAEPTVIE 173

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
           R A     + L   ++I   ++  F          + L     +       ++ R V   
Sbjct: 174 RLAIATPSVVLQAMVTI---LMTFFMIASRMRMRRRLLRERANYSSSVRMARVMRDVQDR 230

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS--FTAVSIY 268
           + S  L +  I +  GL++       G+ + +  G +   +  +P   P++  F    + 
Sbjct: 231 VASYILTVAQINLALGLIVFIGASWWGLAAPIMWGGLAFALNFLPYMGPLTMFFLLGLVG 290

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L     +       L       I    + P ++G    L  +             G+LG 
Sbjct: 291 LGTANTVVLGLVPALAFLALHAIEANLVTPSILGARFTLNPVSILISFSFFTWVWGVLGA 350

Query: 329 FIG-PVLMALIAVI 341
            +  P+L+ L ++I
Sbjct: 351 LLSMPILLTLSSLI 364


>gi|13475610|ref|NP_107177.1| hypothetical protein mlr6726 [Mesorhizobium loti MAFF303099]
 gi|14026366|dbj|BAB52963.1| mlr6726 [Mesorhizobium loti MAFF303099]
          Length = 334

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 55/325 (16%), Positives = 114/325 (35%), Gaps = 23/325 (7%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            ++L +LYF +    P+  +L +   +WPI  +   +    +  L  +  V ++      
Sbjct: 9   ILVLAALYFARSILMPLAFSLFVIALAWPIQMALQRRIPRLAALLITLLLVVLV------ 62

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           ++ +    +  + EL   +         +    +D   G                +  L 
Sbjct: 63  IVIVGSAIVWGLGELSQWLFYNTGRLQAIYASWTDWLEGHGI-----------AIVSPLG 111

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
           E F  +  +       +R   +     L+ IF+++ L     +   + ++L S       
Sbjct: 112 ELFSISRLVGLTHSLVTRLNSVAGFAVLTFIFVMLGLL----EAEDLQRRLRSSLAQPQG 167

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                I R +   IR   +  ++  I  GLV+ +   +AG+    A   I   +  IP  
Sbjct: 168 EMLLHIGREIAGKIRRFMVVRSLACILTGLVVWAFTLVAGLELASAWAAIAFALNYIPFI 227

Query: 258 APIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            P+          +   G+   A  +F+   +  F +   L PFL G  + +      F 
Sbjct: 228 GPLMATIFPTLFAIAQSGSWQLALIVFVGLNVIQFAIGSYLEPFLTGASLAISPFAVMFA 287

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAV 340
           +       G+ G FIG  ++ ++  
Sbjct: 288 VFFWSFMWGVPGAFIGVPILIVVVT 312


>gi|33326380|gb|AAQ08601.1| putative membrane protein [Agrobacterium vitis]
          Length = 260

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 68/224 (30%), Gaps = 5/224 (2%)

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           W            ++   +  NG   +   AS+     +    ++IF    + F      
Sbjct: 27  WLHLDRLASGNGPINLDKMLENGGGILSTVASQVTPAIVQ---TLIFFAALVLFLAGRVS 83

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                + S  +        +    +   +   F   ++I  G G       W+ G+   V
Sbjct: 84  IRKTLIVSFRDRARRLSAIRSINAIETALGFYFATASVIYAGVGCCALLIAWVGGLTLPV 143

Query: 243 ALGVITAIMAMIPGG--APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
             G    + + +P      ++F      +L   ++       +        V+  + P +
Sbjct: 144 LWGFFAFLSSFVPFLGVTAMTFALAVAGMLTHSSLLFGLLPAIAFFTVHAAVENLVTPAV 203

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           +G  +++     F  ++      G  G  +   L  +   I+ E
Sbjct: 204 MGRRMEINAFGVFVAIIFWTWVWGAAGAMLAVPLALIGKAIFTE 247


>gi|313675599|ref|YP_004053595.1| hypothetical protein Ftrac_1497 [Marivirga tractuosa DSM 4126]
 gi|312942297|gb|ADR21487.1| protein of unknown function UPF0118 [Marivirga tractuosa DSM 4126]
          Length = 346

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/343 (13%), Positives = 105/343 (30%), Gaps = 19/343 (5%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
               ++  +++ +I  SL  L   F P++ A+ I     P+      +K     F+A+  
Sbjct: 8   TTNKLLLVLVIPVIFYSLQLLSFIFIPLMFAIFIALLFTPMMRWMKKRKV--PQFIALGT 65

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++ L     + +      +++E  S++     + +               +      
Sbjct: 66  VILILTLTGFSAIKIVQMSGKQIEEGKSEIFKKLDNKV-----------EQVVTPFAETL 114

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                +     +  LK++ I+          + F+   +  I M +        G    +
Sbjct: 115 GLDQNNGDSTIKGLLKSDKIESFILDNFTITISFIQSTVVNILMTLFFLMLLLAGSLNFK 174

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +             K    V + +         ++   G+  G   W  G+   +  G+
Sbjct: 175 DILQSTLFSGGTQSVKTFMKVERSVSDFLKVKIFVSFLTGVSFGVIAWSLGISFPLFWGL 234

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLW----GAIELFIVDKTLRPFLVG 302
           +  ++  +     +  T + +           T L       GA  LF     L P  +G
Sbjct: 235 LAFVINFVQMVGSVVSTILVMLFAFIEIESPGTLLLAAILFTGAQILFGA--VLEPIFMG 292

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
               +  +     L+      G+ GL +   L  L   I  E 
Sbjct: 293 RSFSINIIVVLVMLMFWGFIWGVPGLILSIPLTVLFKTILNEF 335


>gi|116070721|ref|ZP_01467990.1| hypothetical protein BL107_13785 [Synechococcus sp. BL107]
 gi|116066126|gb|EAU71883.1| hypothetical protein BL107_13785 [Synechococcus sp. BL107]
          Length = 338

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 99/302 (32%), Gaps = 7/302 (2%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           ++     + + +++      +      ++    +   VI    ++ +F V L  +    +
Sbjct: 1   MREVLLLLFAGVVVAMALCTLVGILRERRPMGRSLALVICLGGLLTIFTVILTVVIPPFL 60

Query: 87  LEMKELVSKVVLANQHGIPVP-RWL----SDIPGGMWASELWTKHLSHPQSLKILSETFL 141
            E   L+ ++  A Q  + +   W+      I G   AS L    +S P  L    ++  
Sbjct: 61  EEFAVLLQQLPKAAQTLLGLLMDWIDGISQAIYGADSASNLDELGVSDPSKLVPDGQSIA 120

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
              G   +            +  L ++F++           +       L    +     
Sbjct: 121 AGLGSGVLGLLGLA--GNVGNAVLRLLFVVAVALMVSVQPQAYRGVGLQLVPSFYRRRAA 178

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           ++     + + S  +G+ I ++    + G A  L GV   +A  ++  ++ +IP   P  
Sbjct: 179 EVLDRCGQALSSWMVGVLISSVAVSALCGIALSLLGVKLVLANALLAGLLNIIPNVGPTM 238

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
            T   + + +    + +  +     +   +    + P ++   +KL    T         
Sbjct: 239 STVFPMAVAVLDAPWKSIAVLGAYVVIQNMESYVITPSVMHHQVKLLPGLTLAAQFVFTL 298

Query: 322 TM 323
             
Sbjct: 299 MF 300


>gi|83643881|ref|YP_432316.1| permease [Hahella chejuensis KCTC 2396]
 gi|83631924|gb|ABC27891.1| predicted permease [Hahella chejuensis KCTC 2396]
          Length = 344

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 53/339 (15%), Positives = 113/339 (33%), Gaps = 30/339 (8%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             I++  +   +   +  L +        P +    SK    +    V+  V + C  ++
Sbjct: 20  FIIVVAGVKQAESIVSVFLLSAFFAILCTPPFVFLQSK-GVPAWLSLVLVLVGITCAQLL 78

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +  +        + L                WL+ +  G+  S+   K+  +P SL   
Sbjct: 79  VVSVIASSLADFKENLDFYQERLQGVSGEFINWLNSL--GIHISQDVVKNYFNPGSLLKA 136

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           +   L   G                   L+++FM+        +   +  +L    E   
Sbjct: 137 AANMLGGLGG---------VLSNAFLIVLTVVFMVF-------EATVLPNKLHRAFEE-- 178

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
              ++++   +  V R   +    I++  GL +       GV   +   ++  +   IP 
Sbjct: 179 RMTFERLDFFLDNVKRYMSIKTI-ISLVTGLTVWVMLLTLGVDYALLWALLAFLFNFIPN 237

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ I+     +  LI+    +A    +   +   ++   + P  +G  + L  L  F  
Sbjct: 238 IGSIIAAIPAVLLALIQLGPGHAAIAGVGYVVINVVMGNIIEPKFMGRGLGLSTLVVFLS 297

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           LV         G  +GPV M L   +     +A+  ++E
Sbjct: 298 LV-------FWGWVLGPVGMLLSVPLTMMLKIALDSSEE 329


>gi|170740020|ref|YP_001768675.1| hypothetical protein M446_1751 [Methylobacterium sp. 4-46]
 gi|168194294|gb|ACA16241.1| protein of unknown function UPF0118 [Methylobacterium sp. 4-46]
          Length = 353

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 64/203 (31%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +   AS   +       ++  ++    F      +  + L         +   +I     
Sbjct: 150 MLGQASMIAVRVFGAIGNLFVVVALGLFLAAQPAAYREGLLRFVPRRHRSRAAEILDATG 209

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           + +R    G   I     + +     L G+   + LG+   ++  IP    +    V + 
Sbjct: 210 ETLRHWLFGQLAIMAAIFVCVWLGLSLLGLDGALILGLQAGLLCFIPTVGALVAGLVIVL 269

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
             +   +  A        +   +    L PF+    + +P    F G +     +GL G+
Sbjct: 270 AGLAQGLKGALGGLAIYLLVQALESYVLTPFIQKRALDIPPATIFAGQILLGVLLGLWGI 329

Query: 329 FIGPVLMALIAVIWKESIMAIKE 351
            +   LMA+  V+         E
Sbjct: 330 ALALPLMAVAKVLLDRLYRPEIE 352


>gi|116251132|ref|YP_766970.1| transmembrane protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255780|emb|CAK06861.1| putative transmembrane protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 388

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/339 (12%), Positives = 104/339 (30%), Gaps = 17/339 (5%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            + L ++Y +     P+  A+++G           SK        A I + SV  +  + 
Sbjct: 62  ILFLAAVYLMSLILIPITLAVVVGMILGMAAEKL-SKMGVPRLANAFILSSSVALVIFLL 120

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +  L    M    E  +         +P    +            W            +S
Sbjct: 121 INSLADPLMTLANEGPAFAERTINRVMPYLERIR-----------WLHITPATFESGSMS 169

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              L  N  + +    +      +   +    ++  L             + +       
Sbjct: 170 IGALLENTGNVLHVVTTNLTPALVQGLIFFAALLFFL---AGRVNLRKTIIMTFRTRTQR 226

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-- 255
               ++   V +V+   F   ++I +G G+V+    +  G+ + V  G    + + IP  
Sbjct: 227 LAAIRVINAVEQVLGFYFATASLIYVGLGVVMTVIAYAGGLSAPVLWGFFAFVSSFIPYL 286

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
           G   ++       +L    +               +++  + P ++G  +++     F  
Sbjct: 287 GITLMTLAVAVAGILTHDGLLIGLMPAAAFFTVHLLMENLIFPAVMGRRLEINPFVVFLA 346

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           ++      G +G  +   L  ++  +  E ++  K   +
Sbjct: 347 ILFWTWMWGAVGAMLALPLSLIVMTVIDELLIEEKPQPQ 385


>gi|170591957|ref|XP_001900736.1| chromosome 9 open reading frame 5 [Brugia malayi]
 gi|158591888|gb|EDP30491.1| chromosome 9 open reading frame 5, putative [Brugia malayi]
          Length = 755

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 70/208 (33%), Gaps = 14/208 (6%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK------ 202
           I      FG+   ++ + I   +  L++       I      L + L P++         
Sbjct: 547 ILVIVVNFGLEIFNFFIEITVFLTTLYYLLSSSQDIWLPTKWLSDALPPSHDTTSSAQLY 606

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA--LGVITAIMAMIPGGAPI 260
           I   + K I   F+    +++  GL     + +  +       + ++ A+ A IP  AP 
Sbjct: 607 IIPAIEKAISGVFVLSAKMSLFYGLYTYFIHAVFDINVVFIPSIKLLAAVFASIPVMAPC 666

Query: 261 SFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
                        +  +  A    L         D      L G         T   ++G
Sbjct: 667 VVCIFGFLELYFAEHEVAAAVLFVLISLAPKVFADTAFYNELRGS----HPYVTGLAIIG 722

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESI 346
           G+  +GL G  IGP+L+  + V+    +
Sbjct: 723 GMYWLGLQGAIIGPILLCSVIVLLNVYV 750


>gi|126735841|ref|ZP_01751586.1| hypothetical protein RCCS2_18236 [Roseobacter sp. CCS2]
 gi|126715028|gb|EBA11894.1| hypothetical protein RCCS2_18236 [Roseobacter sp. CCS2]
          Length = 381

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 118/336 (35%), Gaps = 20/336 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGF-FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           Q     +I F +++ L     F    + +A+I+   +  + +    ++         +A+
Sbjct: 21  QTGALLIIAFAVVLFLLVQARFVLISLATAIILFSLTSDVINFIARQRVGPFRIPNTLAS 80

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++ M L    LL L    + ++  ++   +   +        L                 
Sbjct: 81  IAAMVLIAAALLTLTSILLAQVNTVLVTTLSYAERAPSAVASL--------------FAF 126

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               S   +           ++   AS+   +      +++ ++   F F    +  ++ 
Sbjct: 127 LGEDSQLAVFNALQSVEISSYLRGAASQASGVTQG---TVLIILFVGFLFAERIWFQTKL 183

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L  +G+ +      KI + +   +    L  T+I+   G ++        +    +LG+I
Sbjct: 184 LSLVGDEVQAERVGKIIQSIIHRVNYYLLVKTVISAITGAMIFVLAQAFSLELATSLGII 243

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIK--GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           T ++  IP    I  TA+   +     G+      +F    +  FI    + P L+G  +
Sbjct: 244 TFVLNFIPNIGSIVATALIALVAHVELGDATITLAIFAIAGVIQFINGSIIDPMLMGRAL 303

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +L        L       G+ G+F+   +M ++ V+
Sbjct: 304 RLSSFGIILSLAFWGAVWGIPGMFLSVPIMVMLLVV 339


>gi|78212727|ref|YP_381506.1| hypothetical protein Syncc9605_1196 [Synechococcus sp. CC9605]
 gi|78197186|gb|ABB34951.1| conserved hypothetical protein [Synechococcus sp. CC9605]
          Length = 359

 Score = 47.9 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/317 (13%), Positives = 110/317 (34%), Gaps = 3/317 (0%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           + +A+++      +      ++        ++  V ++ L       +    + E   L+
Sbjct: 29  IFAAVVLAMALCTLVGILRERRPMQRPLALLLCIVGLLLLVAGAAGVVVPPFLEEFALLL 88

Query: 94  SKVVLANQHGIPV-PRWLSDIPGGMWASELW--TKHLSHPQSLKILSETFLKTNGIDFIP 150
            K+  A Q  + +   W+ +I   ++ ++ +     L      +++ +      G+    
Sbjct: 89  QKLPEAGQTLMRLGLGWIDNISEAIYGADAFPDLDDLGLSGPRQLVPDGSSLAAGLGSGV 148

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                      +  L ++F++           +       L    +    ++I       
Sbjct: 149 LGLLGLAGNLGNGILRLLFVLAVALMISIQPQAYRNIGLQLIPSFYRRRGRRILDQCGAA 208

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S  +G+ I ++   ++   A  L GV   +A  ++  ++ +IP   P   T   + + 
Sbjct: 209 LSSWMVGVLISSLAVFVLCSIALTLLGVKLVLANALLAGLLNVIPNVGPTMSTIFPMAVA 268

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +    + A  +     +   I    + P ++   +KL    T           G LGL +
Sbjct: 269 LLDAPWKAAAVLGAYVVIQNIESYVITPSVMHHQVKLLPGLTLAAQFLFTLLFGPLGLLM 328

Query: 331 GPVLMALIAVIWKESIM 347
              L  ++ VI +E ++
Sbjct: 329 ALPLAVVLQVIIREVLI 345


>gi|116074653|ref|ZP_01471914.1| hypothetical protein RS9916_29004 [Synechococcus sp. RS9916]
 gi|116067875|gb|EAU73628.1| hypothetical protein RS9916_29004 [Synechococcus sp. RS9916]
          Length = 362

 Score = 47.9 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/303 (12%), Positives = 103/303 (33%), Gaps = 6/303 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + L+     + +A+++      +  S   +      +  +I  + ++ +  +    L   
Sbjct: 20  WSLRDVLIHLFAAIVLAMAICTLVGSLRERWPIPRGWALLICLLGLVLVVGIGASILVPP 79

Query: 85  GMLEMKELVSKV-VLANQHGIPVPRWLSDIPG---GMWASELWTKHLSHPQSLKILSETF 140
            + +  +L+ ++   AN+        +++I G   G+  +  W+       +    S T 
Sbjct: 80  FVSQFHQLLLQLPAAANELKQLAIATINNISGRVYGLEGARNWSAQFLSNGTALPDSATL 139

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
              +G+    +             + ++F+I           +  +    L    +    
Sbjct: 140 --ASGLGGGLQQLLGLAGNLGSGLVQLLFVIAVTLMVAVQPQAYREVAIQLMPSFYRRRA 197

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           + I     + + S  +G+ I ++  G++ G    L GV   VA  ++  ++ +IP   P 
Sbjct: 198 RAILLQCGEALSSWMVGLLISSLCVGVLAGIGLSLLGVKLVVANALLAGLLNVIPNVGPT 257

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
             T   + + +    + +  +     +   +    + P ++   +KL    T        
Sbjct: 258 MSTIFPMAVALLDAPWKSLAVLGLYVVIQNLESYVITPSVMHHQVKLLPGLTLTAQFVFT 317

Query: 321 RTM 323
              
Sbjct: 318 VVF 320


>gi|325181761|emb|CCA16217.1| transmembrane protein putative [Albugo laibachii Nc14]
          Length = 449

 Score = 47.9 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 70/216 (32%), Gaps = 20/216 (9%)

Query: 141 LKTNGIDFIPRFASRFGMIFLDYC-LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
           + T   D + + A       +D   +  +  I  L+F                       
Sbjct: 203 ITTTLHDNVEKVARIIITQTMDLLSVMFVTSIYLLYFL--------------ATRTRVGD 248

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
              +   V + I+        +++   +++   Y    V   +  G++T I+  IP    
Sbjct: 249 IGGVWSRVDRDIQRFVSLKCFVSLFVAVLVTIVYVWLNVGLAIVWGILTFILNWIPNVGA 308

Query: 260 ISF--TAVSIYLLIKGNIFNATCLFLWGAIELFI---VDKTLRPFLVGGPIKLPFLPTFF 314
           I      + I ++   N+ N    FL   + +     V   + P + G  ++L  +    
Sbjct: 309 IIASALPMVIIVITPSNLMNPMEKFLAIVLPMSFHMFVGNFIEPKVFGRKLELDPVIVIL 368

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            L       G++G+ +   L A   ++     +  +
Sbjct: 369 SLSAWGLLWGVVGMMLSVPLTAAFKIMLSHLKLWPE 404


>gi|87124280|ref|ZP_01080129.1| hypothetical protein RS9917_11740 [Synechococcus sp. RS9917]
 gi|86167852|gb|EAQ69110.1| hypothetical protein RS9917_11740 [Synechococcus sp. RS9917]
          Length = 369

 Score = 47.9 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/305 (11%), Positives = 98/305 (32%), Gaps = 9/305 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + LK       +A+++      +      +         ++  V +  +  +    +   
Sbjct: 20  WTLKDVLIHCFAAIVLAMALCTLVGRLRQRLPMPRPLALLVCLVGLALVIGIGAAIVVPP 79

Query: 85  GMLEMKELVSKVVLANQH----GIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
              +  +L+ ++  A +      I     +S +  G   +  W++ L  P  +    +  
Sbjct: 80  FTTQFHQLLLQLPAAARELKSLAIQSINGISGMVYGSGTAASWSERL-FPDGVNNWPDGS 138

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
              +G+    +             + I+F+I           +  +    L    +    
Sbjct: 139 ALASGLGGSLQGLLGLAGNLGSGLVQIVFVIAVSLMVAVQPQAYREVAILLVPSFYRRRA 198

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           ++I       + S  +G+ I ++   ++ G    L GV   +A  ++  ++ +IP   P 
Sbjct: 199 REILLQCGDALSSWMVGLLISSLCVAVLAGIGLSLLGVRLVMANALLAGLLNVIPNVGPT 258

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELF--IVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
             T   + + +    + +  L + G   +   +    + P ++   +KL    T      
Sbjct: 259 MSTIFPMAMALLDAPWKS--LAVLGLYVVIQHLESYVITPSVMHHQVKLLPGLTLTAQFV 316

Query: 319 GVRTM 323
                
Sbjct: 317 FTVLF 321


>gi|223939332|ref|ZP_03631212.1| conserved hypothetical protein [bacterium Ellin514]
 gi|223892045|gb|EEF58526.1| conserved hypothetical protein [bacterium Ellin514]
          Length = 324

 Score = 47.9 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 71/192 (36%), Gaps = 1/192 (0%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +   A       +   +  +  I        D    S ++ +    L      +    + 
Sbjct: 121 VGTLARGATSHLVFLLIGAVVAISLFLNSQLDLDRHSHRVKNNLYSLCCEAIAERFFALY 180

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           +   +      +I++   L+     ++  +P  + +  +T +  ++P    +    + + 
Sbjct: 181 QSFSTVMGAQIVISLINTLLTTVFVFIVHLPYGLVVIGVTFLCGLLPVVGNLISNTIIVG 240

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           +    +   A    ++  I +  ++  L   +VG  I+ P   T  GL+ G + MGL G+
Sbjct: 241 VAFTISPRFAFIALIF-LIVVHKLEYFLNSKIVGDRIRNPVWLTLLGLLIGEKLMGLPGM 299

Query: 329 FIGPVLMALIAV 340
            + PV++  I V
Sbjct: 300 ILAPVILNYIRV 311


>gi|216263881|ref|ZP_03435875.1| membrane protein [Borrelia afzelii ACA-1]
 gi|215979925|gb|EEC20747.1| membrane protein [Borrelia afzelii ACA-1]
          Length = 362

 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 47/320 (14%), Positives = 107/320 (33%), Gaps = 27/320 (8%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I+ I + +    +  F P+  ++++GF  +P+Y+     K                  
Sbjct: 23  IVIVLIFIGAFKIAEAVFKPLAISIVLGFLVYPVYTFLARFK------------------ 64

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             VP   + +     +      +     + + V   +  +P          K +      
Sbjct: 65  --VPKFLIVFIIFFLLFSFSYLIFSFVYYSVTVL--MKQLPYYQNQLAFIMKDVLSRY-- 118

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           K+ S      N   +I  F +R     + +  S++ + + L+F   +      +LD   +
Sbjct: 119 KVDSSVINDINFSGYIYPFLTRASNEIIGFTSSLVVVFLLLYFLLSEIHVFGMKLDKAFK 178

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                 +      +   I        +++   G+++     L G    +   V+T +   
Sbjct: 179 KPVSTRFIGALDTINNQIGKYLGIKILVSCLTGILVFIGLTLFGQDFPLVWAVLTFVFNF 238

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCL--FLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           IP  G+ ++   + I  LI+        L  F++      ++   L P + G  + +   
Sbjct: 239 IPSIGSILAVFFIVITSLIQFYPNLNIVLYIFIYNTAVQMLIGNILEPKMQGKRLDISPF 298

Query: 311 PTFFGLVGGVRTMGLLGLFI 330
                L       G++GL I
Sbjct: 299 LLLCFLFFWGWLWGIVGLLI 318


>gi|297624779|ref|YP_003706213.1| hypothetical protein Trad_2564 [Truepera radiovictrix DSM 17093]
 gi|297165959|gb|ADI15670.1| protein of unknown function UPF0118 [Truepera radiovictrix DSM
           17093]
          Length = 385

 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 45/298 (15%), Positives = 97/298 (32%), Gaps = 13/298 (4%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
             + ++     +   +++      +            T+   +  VS+  L  +   F  
Sbjct: 40  GAWRVQSVVFLLFLGILLAVFWRGLARPLARSTPLPMTWAVGVVIVSLTVLVGLLGWFFA 99

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH---PQSLKILSET 139
              + +++ L + V  A +    + R L+  P G                   L      
Sbjct: 100 PPLVTQLQLLAAAVPEALEE---LERTLTTTPLGRALRREMPDMTDQETVMDLLLPRLTD 156

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF-FFYRDGFSISQQLDSLGEHLFPA 198
           F     +     FA+  G++     L    +  AL   FYR G      + +L      A
Sbjct: 157 FAGQFVVQLFGTFAATAGVVTNLVFLFFTALFFALHPDFYRGG------VVALFPKARRA 210

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              ++ R   + +    LG  +  +  GL++    W   +P  + LG +  ++  IP   
Sbjct: 211 RLDEVLRAAGETLWFWLLGRFVAMVAVGLMVTLGLWALDMPLALLLGFLAFLLDFIPYVG 270

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           P + +  ++ L      +    + L       I    + P +    ++LP + T   +
Sbjct: 271 PFAASVPALLLAFTVGPWTFVWVALLYTAVQQIESYLVTPVVQQRAVELPPILTLIAI 328


>gi|78212726|ref|YP_381505.1| hypothetical protein Syncc9605_1195 [Synechococcus sp. CC9605]
 gi|78197185|gb|ABB34950.1| conserved hypothetical protein [Synechococcus sp. CC9605]
          Length = 329

 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 68/217 (31%), Gaps = 4/217 (1%)

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
            D+P  +        +      L       L  NG+  +  FA        +  + +  M
Sbjct: 89  RDLPQLVSKVSDLLSNEPRLAQLNDAVGEGLNLNGLQPLLGFAG----GAANSLVQLFLM 144

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           ++       D  +  + + ++         + +     + +     GMT+ +    L+  
Sbjct: 145 VLLAILLALDPNAHRRMVVAMTPRPAREQMEHLLDECRQALGGWLSGMTLSSTTVFLLTW 204

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
               L   P  +   ++  ++  +P   P + T +   L +  +      + ++  +   
Sbjct: 205 GGLMLIKAPLALLSALVCGLLTFVPTIGPTAATLLPAGLALLQSPQLMLSVLVFRLVLQN 264

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +    L P L+   + L         +     +GL G
Sbjct: 265 LEAFLLTPLLLRKTVNLLPTVALTAQLSLGALLGLPG 301


>gi|154498034|ref|ZP_02036412.1| hypothetical protein BACCAP_02015 [Bacteroides capillosus ATCC
           29799]
 gi|150273024|gb|EDN00181.1| hypothetical protein BACCAP_02015 [Bacteroides capillosus ATCC
           29799]
          Length = 395

 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/328 (10%), Positives = 96/328 (29%), Gaps = 21/328 (6%)

Query: 8   PQGIMRWMIMFIILVSLYF--------------LKGFFAPVLSALIIGFTSWPIYSSFIS 53
               +  +++ +I +  Y               L G  +P ++   I +        F  
Sbjct: 14  DSRAVSNLLVVLIGILFYMALANIGALQSKVDSLLGVLSPFIAGFAIAYLLNTPMDFFER 73

Query: 54  K----KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW 109
           +     +       +   +  + + ++ L  +    +  +  L S +     +   +  +
Sbjct: 74  RVFYNFKRKRGLSVLTVYLLALVVVVILLNLILPQVIESILALGSNMSTYLSN---LNLF 130

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
           + D+             L       +       +  +  +       G + +    ++I 
Sbjct: 131 VQDLIDQYHLEGEGLTDLVTLYQDLLKRAATWASQKVPELLSLGVAVGNVLISAITALIS 190

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
            +  L    R    + + + +         +  I R    V      G  I +   G++ 
Sbjct: 191 SVYMLAGKGRLVPQLKKIIYAAAPTAKVDRFLSICRHANGVFVGFINGKIIDSAIIGVLC 250

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
                +  +P  + + V+  +  +IP   PI      I +LI  + + A    +      
Sbjct: 251 FVLNLIFQIPFAMLVAVVVGVTNVIPFFGPIIGAVPCIMILIIVDPWAALRFGVLVIALQ 310

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
                 L P ++G    L  +     ++
Sbjct: 311 QFDGNILGPKILGDSTGLDAIWVLVAII 338


>gi|154150834|ref|YP_001404452.1| hypothetical protein Mboo_1291 [Candidatus Methanoregula boonei
           6A8]
 gi|153999386|gb|ABS55809.1| protein of unknown function UPF0118 [Methanoregula boonei 6A8]
          Length = 351

 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 71/188 (37%), Gaps = 4/188 (2%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           N    IP   S    +  D  + + F+ +  FF   +   +  + + + +      W   
Sbjct: 128 NLAAIIPALVSSLANLSADM-MDLFFIAVTTFFILLEAPPMISRTEEMLKESPEKLWH-- 184

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISF 262
              +   +    +  T      G++ G +  L GV + V  G++T ++  IP  G  ++ 
Sbjct: 185 LAKMSGFVVDFMVVRTETNFVHGILFGGSLALMGVHAAVLWGILTFVLGYIPYFGLILAA 244

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
                +  ++  I+ A  +     +   IV+  +  +L     ++P L   F ++     
Sbjct: 245 IPAIFFAWLQFGIWGAVAVVAIVCVLNLIVENPVFSYLASRKFEIPALVVIFSVIFWGWL 304

Query: 323 MGLLGLFI 330
           +GL G+  
Sbjct: 305 LGLAGMLF 312


>gi|260434824|ref|ZP_05788794.1| hypothetical protein SH8109_1720 [Synechococcus sp. WH 8109]
 gi|260412698|gb|EEX05994.1| hypothetical protein SH8109_1720 [Synechococcus sp. WH 8109]
          Length = 329

 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 75/239 (31%), Gaps = 14/239 (5%)

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           + EL+S+     +    +   +SD+             L    +LK L            
Sbjct: 77  VPELISQFQQLGRDLPQLVSKVSDLLSSEPRLAQLNDALGEGLNLKELQP---------- 126

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
                  F     +  + +  M++       D  +  + + ++         + +     
Sbjct: 127 ----LLGFAGGAANSLIQLFLMVLLAILLALDPSAHRRMVVAMTPRPARERMEHLLDECR 182

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           + +     GMT+ A    L+     +L   P  +   ++  ++  +P   P + T +   
Sbjct: 183 QALGGWLSGMTLSATTVFLLTWGGLFLLKAPLALLSALVCGLLTFVPTIGPTAATLLPTG 242

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           L +  ++     + ++  +   +    L P L+   + L         +     +GL G
Sbjct: 243 LALLQSLQLMLSVLVFRLVLQNLEAFLLTPLLLRKTVNLLPTVALTAQLSLGALLGLPG 301


>gi|282863867|ref|ZP_06272925.1| protein of unknown function UPF0118 [Streptomyces sp. ACTE]
 gi|282561568|gb|EFB67112.1| protein of unknown function UPF0118 [Streptomyces sp. ACTE]
          Length = 351

 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/311 (12%), Positives = 93/311 (29%), Gaps = 45/311 (14%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           P++     +K    +  A +   +++ +       +    +    ++VS +  A Q    
Sbjct: 58  PVHRWLTGRKVNR-SLAAGLTCAALVAVVGGAGYIVVTALIDSGDQIVSSLKQAAQ---- 112

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
              W+                +++P  L   ++  +   G        +    +      
Sbjct: 113 ---WV--------IDHFHIDGVANPDDLADNTKGLVDKFGASAAGGLLTGI-SLLTTLGA 160

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           + +  ++  FFF RD    +     +         + + R   + ++    G T+IA+ +
Sbjct: 161 TAVLALLLTFFFLRDSDRAAHLAHVVAPRGTGDLVEAMGRRAFEAVQGFMRGTTLIALID 220

Query: 226 GLVLGSA--------------YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
            + +                     G         ++  ++++   A   F         
Sbjct: 221 AVCITVGLLILRVPGAVGLGALVFVGAYIPYLGAFVSGTVSVLVALADRGFVIA------ 274

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
                 A  + L   +        L+P +    +++        L  G    GLLG+ + 
Sbjct: 275 ----LWALGVVLVVQLLEG---HVLQPVIQSRTVQMHPAAILVALTAGASVAGLLGMLLA 327

Query: 332 -PVLMALIAVI 341
            P   A+  VI
Sbjct: 328 VPFCAAVFGVI 338


>gi|301167663|emb|CBW27246.1| putative membrane protein [Bacteriovorax marinus SJ]
          Length = 335

 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 44/347 (12%), Positives = 105/347 (30%), Gaps = 34/347 (9%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF-LKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M++T      +   ++ FI         K    P + +L I   S P    F +K +   
Sbjct: 1   MKDTYDRINNVCLVILTFIAFTGALIYTKSILIPFVISLFIFSVSGPSIDWFETKLKAPR 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
                +     +    V  LF+       +  +    +        V  +L+        
Sbjct: 61  FLAVALTMGIFILSSFVVSLFIVKSLNAFIDGIGDYHIRFTLAVDSVVAFLNS------- 113

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                       S++I  E    T     +     +F    +++  + + +II + F   
Sbjct: 114 -----------YSIEINPEMIKDTVRNLPVLSLVKKFSGGLVNFVSNSVLIIIMVLFL-- 160

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
                      +           + + V   I         ++    +++G   +   V 
Sbjct: 161 -----------IAGEGVTKIKNDMVKQVHYKISKYVATKFFMSFITAVIVGILLFSLKVD 209

Query: 240 SHVALGVITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
                 ++T ++  IP    I      + +  L  G  +    +    +   F +   + 
Sbjct: 210 LAFMFVILTFLLNFIPSIGSIIAVLIPLPVLFLQFGAGWELVTVMSISSAIQFCIGNVIE 269

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           P ++G  + L  +     L+      G+ G+F+   + A++ ++   
Sbjct: 270 PKIMGENLGLHPIVILLFLLFWGLVWGIPGMFLAVPMTAVMKIVLSR 316


>gi|198451544|ref|XP_001358412.2| GA15434 [Drosophila pseudoobscura pseudoobscura]
 gi|198131535|gb|EAL27551.2| GA15434 [Drosophila pseudoobscura pseudoobscura]
          Length = 819

 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 74/210 (35%), Gaps = 5/210 (2%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           I       G   +++ L +I    ALF+           L       + +   KI+  + 
Sbjct: 602 ILSLVLSGGQACIEFILDMIVFFTALFYLLSSSKEKYAPLQITKYLGYSSSGSKIADSME 661

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSI 267
             I    + M   +I  GL     + + G         + AI+A  P  G+        +
Sbjct: 662 NSITVVLVSMFKCSIFTGLFTWLVHTVFGARIVFLPSALAAILAAAPFLGSYWCAVPAFL 721

Query: 268 YLLIKGNIFN-ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
            L +  + F     LFL         +  +   L GG            + GG+  +G  
Sbjct: 722 ELWLAQDCFYTGLLLFLLQFFVPSTFETAIYADLKGGG---HPYLNGLAIAGGMYWIGWQ 778

Query: 327 GLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           G  +GP+++     I++ + +A++ N++  
Sbjct: 779 GAILGPLMLCFFIGIFEVAALAMRSNQDPP 808


>gi|327191355|gb|EGE58384.1| putative transmembrane permease protein [Rhizobium etli CNPAF512]
          Length = 389

 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/348 (12%), Positives = 108/348 (31%), Gaps = 21/348 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
            GI   + +  + +    L      V+  +I+G  +  +     SK        A + + 
Sbjct: 58  IGIFAILGLAAVYMMSLILIPITLAVVVGMILGIAAENL-----SKMGVPRLANAFLLSS 112

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V  +  +    L         E  + V       +P    +            W     
Sbjct: 113 GVALVIALLANSLAGPLATLANEAPAFVERTITRIMPYLERIE-----------WLHITP 161

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                  +S   L  N    +    +      +   +    +++ L             +
Sbjct: 162 ATFESGPMSIGALLENTGSVLHVVTTSLTPALVQGLIFFAALLLFL---ASRVNLRKTII 218

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +           ++   V +V+   F   ++I IG G+V+    +  G+ + V  G   
Sbjct: 219 MTFRTRTQRLAAIRVINGVEQVLGFYFATASLIYIGLGVVMTVIAYAGGLSAPVLWGFFA 278

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGN-IFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            + + IP  G  +   +V+I  +I  +                 +++  + P ++G  ++
Sbjct: 279 FLSSFIPYLGITLMTLSVAIAGIITHDGFVVGLMPAAAFFTVHLVMENIIFPAVMGRRLE 338

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           +     F  ++      G +G  +   L  ++  + +E ++  +   +
Sbjct: 339 INPFIVFLAILFWTWMWGAVGAMLALPLSLIVMTVIEELLIEERPQPQ 386


>gi|149926520|ref|ZP_01914781.1| probable transmembrane protein [Limnobacter sp. MED105]
 gi|149824883|gb|EDM84097.1| probable transmembrane protein [Limnobacter sp. MED105]
          Length = 347

 Score = 47.5 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 108/332 (32%), Gaps = 16/332 (4%)

Query: 10  GIMRWMIMFIILVSLYF--LKGFFAPVLSALIIGF-TSWPIYSSFISKKEESSTFLAVIA 66
            + R +I+ + + + +F  L     P + A++I +  +  +     +         A IA
Sbjct: 14  SLSRVLIVVVWICAAWFSVLALHLTPAVFAILITYGATTRLAHRLKAWLPALRHVEA-IA 72

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + V+    + L     Y +      V    +  +    +      +P  + A       
Sbjct: 73  LLLVLSAIALGLGASLEYLLESGSANVGVPAVLERLSKVLDELRLALPAALSAHVP---- 128

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            +    ++  +  +L+ +    +  +               +   +      R    +S 
Sbjct: 129 -ASIDGVRAAAAAWLQNHASQ-LQTWGGHTLRGVGYVLAGTVIGALLSIQLNRSTGKVSS 186

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VPSHVAL 244
           +       L    + ++      ++ + F    I  +   + L       G  +P    L
Sbjct: 187 K---HLPRLLRLRFDELIESFTHIVFAQFKISAINTLATAIFLLGVLPALGTPIPLAGTL 243

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
             IT +  MIP    +    + + + +  ++  A   F+W  + +  V+  L   ++G  
Sbjct: 244 VSITFVAGMIPIVGNLVSNTIIVAIALSQSLTMAILAFIW-LVAIHKVEYFLNAHIIGSS 302

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
           I+         ++      GL GL   PVL A
Sbjct: 303 IRSKAWELLLAMLVMEALFGLAGLVTAPVLYA 334


>gi|315928096|gb|EFV07415.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 187

 Score = 47.1 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 56/160 (35%), Gaps = 11/160 (6%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           ++ A ++   +  I + F++  +      +++ T  ++ LF  P ++        +K   
Sbjct: 30  IIIASLMAVATSNINAKFLNLTKGHKFLASILTTTCMVLLFFAPFVYAMIELAKALKNF- 88

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             + L  Q    V  +   +P      E   K       L  +S+  L          +A
Sbjct: 89  -DINLVTQTLDYVKNYQFTLPESFNFLEPKIKEFLASIDLNSISKQIL---------SYA 138

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           S F      + + ++ + +  FF    G  +   L S+  
Sbjct: 139 SSFTKSGAKFLIDMVLICVFYFFANLYGTELVIYLKSIIP 178


>gi|111114828|ref|YP_709446.1| hypothetical protein BAPKO_0005 [Borrelia afzelii PKo]
 gi|110890102|gb|ABH01270.1| conserved hypothetical integral membrane protein [Borrelia afzelii
           PKo]
          Length = 362

 Score = 47.1 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 47/320 (14%), Positives = 107/320 (33%), Gaps = 27/320 (8%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I+ I + +    +  F P+  ++++GF  +P+Y+     K                  
Sbjct: 23  IVIVLIFIGAFKIAEAVFKPLAISIVLGFLVYPVYTFLARFK------------------ 64

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             VP   + +     +      +     + + V   +  +P          K +      
Sbjct: 65  --VPKFLIVFIIFFLLFSFSYLIFSFVYYSVTVL--MKQLPYYQNQLAFIMKDVLSRY-- 118

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           K+ S      N   +I  F +R     + +  S++ + + L+F   +      +LD   +
Sbjct: 119 KVDSSVINDINFSGYIYPFLTRASNEIIGFTSSLVVVFLLLYFLLSEIHVFGMKLDKAFK 178

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                 +      +   I        +++   G+++     L G    +   V+T +   
Sbjct: 179 KPVSTRFIGALDTINNQIGKYLGIKILVSCLTGILVFIGLTLFGQDFPLVWAVLTFVFNF 238

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCL--FLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           IP  G+ ++   + I  LI+        L  F++      ++   L P + G  + +   
Sbjct: 239 IPSIGSILAVFFIVITSLIQFYPNLNIVLYIFIYNTAVQMLIGNILEPKMQGKRLDISPF 298

Query: 311 PTFFGLVGGVRTMGLLGLFI 330
                L       G++GL I
Sbjct: 299 LLLCFLFFWGWLWGIVGLLI 318


>gi|226357951|ref|YP_002787691.1| permease; membrane protein [Deinococcus deserti VCD115]
 gi|226320194|gb|ACO48187.1| putative permease; putative membrane protein [Deinococcus deserti
           VCD115]
          Length = 333

 Score = 47.1 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 43/330 (13%), Positives = 90/330 (27%), Gaps = 32/330 (9%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + + L  L+  +    P++   +I     P+      +                      
Sbjct: 16  VLLTLGGLHVTQDATLPLVFGAVIALFFRPLQRRLEQRLP--RWLSVA------------ 61

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             L +  +       L S V   N     +PR+   + G                 +++ 
Sbjct: 62  --LIILLFLAFLALILGSVVYAVNVVAQDLPRYAERLKG---------------YGIRLP 104

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                 +     +           L        +++ L     +  +  ++L        
Sbjct: 105 DSLSSGSPSGSNVMGVVFGGLRAVLSPLGLTGLLLVFLVLLLAEADAWRRRLVQAFGAER 164

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
                     + +         T+  +   ++      L G+P      V+T ++   P 
Sbjct: 165 GRRLTDAFGRMGRQFEQFMWVQTVTGLITAVLTWGICALVGLPFPFVWAVLTFVLEFFPT 224

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ +S     ++    G       + L   +    V   L P   G  +KL      F 
Sbjct: 225 IGSLLSVVPPVLFAFAFGGAAQGALVLLGLTVVQLGVGSLLNPKWQGDRLKLSPTVVAFS 284

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +V      G+ G  I   L A IA++  E 
Sbjct: 285 VVFWGWLWGVGGAIIAVPLTAGIALLLSEF 314


>gi|303284070|ref|XP_003061326.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457677|gb|EEH54976.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 746

 Score = 47.1 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 63/193 (32%), Gaps = 7/193 (3%)

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
                L Y L  +     LF         + +L  L   +     +   + + + +R  F
Sbjct: 463 VAGGVLSYVLKSVVFFTVLFHILNSEADPAVRLVELIP-VNAHVKEVAVKSLTRGVRGVF 521

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGN 274
           +    +A+         +   GV       + + + A++P  A        ++ LL KG 
Sbjct: 522 VSCVKLALFHAAFTWVTFRAFGVHFVYTSTLASGLTAILPLLASWSVSLPAALGLLAKGE 581

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM--GLLGLFIGP 332
              A  L L   I L  VD  +          +        +VGG+      L G  +GP
Sbjct: 582 GAKAAALVLMHWITLIFVDIDIY---QSEIRVVHPYVVGLSVVGGMCVFDPALQGAVLGP 638

Query: 333 VLMALIAVIWKES 345
           +L+   A  +   
Sbjct: 639 LLVTACATGYNLY 651


>gi|172037187|ref|YP_001803688.1| hypothetical protein cce_2272 [Cyanothece sp. ATCC 51142]
 gi|171698641|gb|ACB51622.1| hypothetical protein cce_2272 [Cyanothece sp. ATCC 51142]
          Length = 357

 Score = 47.1 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 46/329 (13%), Positives = 114/329 (34%), Gaps = 20/329 (6%)

Query: 25  YFLKGFFAPVLSALIIG-FTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           + +K       +A+II  F +  + +  + +      +  +++ V ++ +       +  
Sbjct: 20  WNIKQLLLLFFTAVIIANFINHGVQA--LQRFGIKRGYAVILSIVLLLTIVSGFFWLIVP 77

Query: 84  YGMLEMKELVSKVVLA-NQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
               ++ +L   V    +Q  I +  ++S +             L   Q +    +  L+
Sbjct: 78  PFAQQLPQLFKLVPQGIDQLIITIKDFISRL------DPELIDALPSSQKIIEQLQPILE 131

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 +  F +  G+      L  + +++ +     +  +  Q         +      
Sbjct: 132 RIAGQGLSVFYTTLGIPLTSLLLLALTLMLLV-----NPNAYRQGFIRFFPSFYRQKVDH 186

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS- 261
           I +   + ++     +    +   L+      L  +P  +A  ++  I+  IP   P+  
Sbjct: 187 ILKECDRSLQGGLTIILFQMVMISLLSFIGLSLLKMPLTLAQSMLAGILTFIPNIGPVLS 246

Query: 262 -FTAVSIYLLIKGNIFNATCLF--LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
               V+I LL       A  +   ++  I     +K L P ++     L    T    V 
Sbjct: 247 FIPPVAIALLESQWKSFAVFILYVIFYIIIQIAKNKLLNPLVIENRKSLLPAFTLLSQVF 306

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIM 347
                G+LG F+  + +AL++ +W   ++
Sbjct: 307 FAGLFGVLGFFLA-LPLALVSQVWLHEVL 334


>gi|195146082|ref|XP_002014019.1| GL24454 [Drosophila persimilis]
 gi|194102962|gb|EDW25005.1| GL24454 [Drosophila persimilis]
          Length = 819

 Score = 47.1 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 74/208 (35%), Gaps = 5/208 (2%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           I       G   +++ L +I    ALF+           L       + +   KI+  + 
Sbjct: 602 ILSLVLSGGQACIEFILDMIVFFTALFYLLSSSKEKYAPLQITKYLGYSSSGSKIADSME 661

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSI 267
             I    + M   +I  GL     + + G         + AI+A  P  G+        +
Sbjct: 662 NSITVVLVSMFKCSIFTGLFTWLVHTVFGARIVFLPSALAAILAAAPFLGSYWCAVPAFL 721

Query: 268 YLLIKGNIFN-ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
            L +  + F     LFL         +  +   L GG            + GG+  +G  
Sbjct: 722 ELWLAQDCFYTGLLLFLLQFFVPSTFETAIYADLKGGG---HPYLNGLAIAGGMYWIGWQ 778

Query: 327 GLFIGPVLMALIAVIWKESIMAIKENKE 354
           G  +GP+++     I++ + +A++ N++
Sbjct: 779 GAILGPLMLCFFIGIFEVAALAMRSNQD 806


>gi|218673206|ref|ZP_03522875.1| putative transmembrane protein [Rhizobium etli GR56]
          Length = 388

 Score = 47.1 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/346 (10%), Positives = 111/346 (32%), Gaps = 17/346 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +  +   + L ++Y +     P+  A+++G     + +  + K        A + +  V
Sbjct: 55  AIIGIFAILGLAAVYMMSLILIPITLAVVVGMIL-GLAAEKLGKMGVPRLANAFLLSSGV 113

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             +  +    L     +   E  + V       +P    +            W       
Sbjct: 114 ALVIALLANSLVGPLTMLANEAPAFVERTINRIMPYLERIE-----------WLHITPAT 162

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
              + +S   L  N  + +    +      +   +    +++ L             + +
Sbjct: 163 FESEPMSIGALLENTGNVLHLVTTSLTPALVQGLIFFAALLLFL---ASRVNLRKTIIMT 219

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                      ++   V +V+   F   ++I +G G+V+    + +G+ + V  G    +
Sbjct: 220 FRTRPQRLAAIRVINAVEQVLGFYFATASLIYVGLGVVMTVIAYASGLSAPVLWGFFAFL 279

Query: 251 MAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            + IP  G   ++ +     ++                    +++  + P ++G  +++ 
Sbjct: 280 SSFIPYLGITLMTLSVAIAGIITYDGFIVGLMPAAAFFTVHLVMENLIFPAVMGRRLEIN 339

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
               F  ++      G +G  +   L  ++  + +E ++  +   +
Sbjct: 340 PFIVFLAILFWTWMWGAVGAMLALPLSLIVMTVIEELLIEERPQPQ 385


>gi|160902022|ref|YP_001567603.1| hypothetical protein Pmob_0546 [Petrotoga mobilis SJ95]
 gi|160359666|gb|ABX31280.1| protein of unknown function UPF0118 [Petrotoga mobilis SJ95]
          Length = 318

 Score = 47.1 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 57/336 (16%), Positives = 109/336 (32%), Gaps = 23/336 (6%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE--SSTFLAVIATVSVMCLFI 75
            I LV    L  F   +++ALI+G     +  +      +  +S   AV++ + V+ L +
Sbjct: 3   LIYLVVFLLLAHFSPFIIAALILGVFLSMLIEAPQKLFSKVMNSKISAVLSHILVLGLVL 62

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
              +  F   + E  +L S +       IP    L+ +P      E     ++       
Sbjct: 63  YAAITFFPVVISEGNKLFSMLSSLT---IPQEEALAQLP------EWLVTFIND------ 107

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                L  N  DF     ++      +   S I +++               L  L    
Sbjct: 108 -----LNKNLSDFALGLMNQLLSSIPNLITSAIVLVVTTAAIGSLKTITKNNLWKLYPVN 162

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 K  +           G  + AI  G  +G   ++ G+PS + LG++  I   IP
Sbjct: 163 DREKGLKFMKDTYSQFERFVHGQFLTAIMVGTFIGLMSFIFGIPSALFLGILAWITDFIP 222

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK-TLRPFLVGGPIKLPFLPTFF 314
               +      + L    N      + L        ++     P +    + L +     
Sbjct: 223 YLGVVISAVPLLMLAFTENGLIGLIIGLVILTAANQLEMWFFSPRIQSNALNLHWFVIII 282

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            ++        LG+ I   ++  I   W+  ++ IK
Sbjct: 283 SILLFGELFSFLGILIALPIVVYIRNFWEYFVIKIK 318


>gi|52842249|ref|YP_096048.1| transporter, permease [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52629360|gb|AAU28101.1| transporter, permease [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 378

 Score = 47.1 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 73/202 (36%), Gaps = 4/202 (1%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF-PAYWKK 202
            G+       + +G+       +++  +  +F  + +    +Q++D+           K 
Sbjct: 150 QGLSIQSMLVNIYGVFTTITSSAVLISLYVVF-LFVEQHYFTQKMDAFFPQAEHRKLVKN 208

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           I   + K  ++     T++++    +        G+       ++   +  IP    I  
Sbjct: 209 IISHITKDTQTYLGIKTLLSLLTATLSWFIMKWVGLDFAEFWALLIFFLNYIPNIGAIVA 268

Query: 263 T--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
           T    ++ L+   + +    +        F V   L P L+G  + L  L   F L    
Sbjct: 269 TAFPAALALIQFESWWPFLEVTSGIVAIQFFVGNFLEPRLLGKSLNLSPLVILFALALWG 328

Query: 321 RTMGLLGLFIGPVLMALIAVIW 342
              G+LG+F+   +  ++ +I+
Sbjct: 329 AIWGVLGMFLSVPITVMMMIIF 350


>gi|295115005|emb|CBL35852.1| Predicted permease [butyrate-producing bacterium SM4/1]
          Length = 156

 Score = 47.1 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 60/152 (39%), Gaps = 2/152 (1%)

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           +F   +   SR +     +      II      +      +   P  + LG+   I+  +
Sbjct: 1   MFSREFALFSRRLVMTGNTWLRTQLIIMFITSCLCILGLVMIRNPYCILLGLGIGILDAL 60

Query: 255 P-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P  G        S+ LL++   +    L     I   +V + L   L+G  + L  L T 
Sbjct: 61  PLFGTGAVLVPWSLILLVQKQWYEGIVLAGL-FIVCCLVREFLEARLMGDGMGLSPLETL 119

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             +  G++  G+LG+ +GP+ + +I  + +E 
Sbjct: 120 AAIYVGLKLFGILGVLLGPIGLLIIEDLVEEY 151


>gi|254416264|ref|ZP_05030018.1| conserved domain protein, putative [Microcoleus chthonoplastes PCC
           7420]
 gi|196176946|gb|EDX71956.1| conserved domain protein, putative [Microcoleus chthonoplastes PCC
           7420]
          Length = 354

 Score = 47.1 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 60/162 (37%), Gaps = 1/162 (0%)

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +    L    +     +I +   + +R    G+        L+      L G+P  +A  
Sbjct: 145 KSFIRLFPSFYRRRVDEILQRCNESLRGWLAGILFNMAVISLLSFFGLLLLGIPLALAQA 204

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            +  I+  IP   P+      I + +  + + A  + +   +   +    L P ++   +
Sbjct: 205 TLAGILTFIPNLGPVVSVIPPIAIALLDSPWKAIAVLILYIVIQQVESNLLTPLVMAQQV 264

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            L    T    +  V   G +GL +  + + ++A +W + ++
Sbjct: 265 SLLPAITLLAQLFFVTFFGFIGLLLA-LPLTVVAQVWLKEVL 305


>gi|239628242|ref|ZP_04671273.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518388|gb|EEQ58254.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 120

 Score = 47.1 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 2/108 (1%)

Query: 235 LAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
           + GV   V +  + ++  ++P  G        +I   +KGN   +  L     + + ++ 
Sbjct: 1   MIGVERSVLIAFLISVFDILPVLGTGGIMIPWTILTALKGNYPLSAGLLAVY-LIITVIR 59

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             + P +VG  I L  + T   +  G +  G+LGLF  P+ ++L+  +
Sbjct: 60  NIIEPKIVGSQIGLHPVVTLSSMFVGAQLFGVLGLFGFPIGLSLLRHL 107


>gi|86139434|ref|ZP_01058003.1| hypothetical protein MED193_13328 [Roseobacter sp. MED193]
 gi|85823937|gb|EAQ44143.1| hypothetical protein MED193_13328 [Roseobacter sp. MED193]
          Length = 347

 Score = 47.1 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 59/158 (37%), Gaps = 2/158 (1%)

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +LG H    +  ++ R + + I +     T++ +   LV  +   L G+       +I 
Sbjct: 173 RALGNHAQSEHTMELVRKINERIGNYLAAKTLVNVILALVSFALLKLLGIAHPAFWAIII 232

Query: 249 AIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            ++  IP    +      V++ L+   +  +A    +   I   +V   + P  +G  + 
Sbjct: 233 GLLNYIPYIGSVIAVVFPVTMSLIQFTSFSHAGLALVLLMIPQIVVAYYIEPKFLGRSVN 292

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L        L       G+ G  +   L A++ +I  E
Sbjct: 293 LSPFTVLLALAVWSTLWGMTGAILAVPLTAMVMIILAE 330


>gi|224534934|ref|ZP_03675503.1| membrane protein [Borrelia spielmanii A14S]
 gi|224513874|gb|EEF84199.1| membrane protein [Borrelia spielmanii A14S]
          Length = 362

 Score = 47.1 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 107/320 (33%), Gaps = 27/320 (8%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I+ I + +    +  F P+  ++++GF  +P+Y+     K                  
Sbjct: 23  IVIVLIFIGAFKIAEAVFKPLAISIVLGFLVYPVYTFLARFK------------------ 64

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             VP   + +     +      +     + + V   +  +P          K +      
Sbjct: 65  --VPKFLIVFIIFFLLFSFSYLIFSFVYYSVTVL--MKQLPYYQNQLAFIMKDVLSRY-- 118

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           K+ S      N   +I  F +R     + +  S++ + + L+F   +      +LD   +
Sbjct: 119 KVDSSVINDINFSGYIYPFLTRASNEIIGFTSSLVVVFLLLYFLLSEIHVFGMKLDKAFK 178

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                 +      +   I        +++   G+++     L G    +   V+T +   
Sbjct: 179 KPVSTRFIGALDTINNQIGKYLGIKILVSCLTGILVFIGLTLFGQDFPLVWAVLTFVFNF 238

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCL--FLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           IP  G+ ++   + I  LI+        L  FL+      ++   L P + G  + +   
Sbjct: 239 IPSIGSILAVFFIVITSLIQFYPNLNIVLYIFLYNTSVQMLIGNILEPKMQGKRLDISPF 298

Query: 311 PTFFGLVGGVRTMGLLGLFI 330
                L       G++GL I
Sbjct: 299 LLLCFLFFWGWLWGIVGLLI 318


>gi|145350774|ref|XP_001419773.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580005|gb|ABO98066.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 489

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 64/199 (32%), Gaps = 17/199 (8%)

Query: 155 RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRST 214
             G+    Y   I+ M+    F                          ++R + K  R  
Sbjct: 231 TLGVGVFHYMQDIMLMLFYTLFLL------------APRRELSRARSLVARRIHKATRRF 278

Query: 215 FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV--ITAIMAMIPGGAPIS--FTAVSIYLL 270
              M  IA+   L +GS   L GVP  +A+ V  ++  +  IP    I      + + +L
Sbjct: 279 VSIMVQIAVVRALSVGSLLGLCGVPWPLAIAVAIVSFWLFFIPTLGSIVASILPLPMIVL 338

Query: 271 IKGNIF-NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           +            +   +  F+V   + P +    + L  +     LV      G  G  
Sbjct: 339 LPDLTERQRVAGSIIPNLVSFLVGDLIGPVVYRKGLDLNEVTVLLALVFWYSVWGAAGAV 398

Query: 330 IGPVLMALIAVIWKESIMA 348
           +G  L   + ++ +E    
Sbjct: 399 LGVPLTCALKIVLEEMPHE 417


>gi|327479058|gb|AEA82368.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 356

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 61/218 (27%), Gaps = 6/218 (2%)

Query: 96  VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASR 155
           V  A+     +P  +  +           + L     L         ++    + +    
Sbjct: 96  VEQADALSDSLPEAVERLRERAEQLPWANELLQQSDRLADSLPE--GSSAFSVVTKVMGS 153

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
                  + ++    I        D       L  L    +     ++       +R+  
Sbjct: 154 VAGALSSFVIAFAIGIC----LAIDPRVYRSGLLKLVPQGYRPRAAEVLDESGATLRAWL 209

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNI 275
           L   +  +  G++     WL G+   + LG+I  +++ IP   P+     ++ L      
Sbjct: 210 LAKLLEMLLIGVLTTLGLWLLGIELALVLGLIAGLLSFIPNIGPVLAVIPALLLASLEGG 269

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
                +         +      PF+    + +P   T 
Sbjct: 270 RTVLYVAGLYLFVQALESYVFTPFMQQRIVSIPPALTI 307


>gi|304313003|ref|YP_003812601.1| hypothetical protein HDN1F_33860 [gamma proteobacterium HdN1]
 gi|301798736|emb|CBL46969.1| Hypothetical protein HDN1F_33860 [gamma proteobacterium HdN1]
          Length = 381

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 51/346 (14%), Positives = 115/346 (33%), Gaps = 26/346 (7%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
            R  I    L     + GF   + ++ I         +    K   S +  +   T+++ 
Sbjct: 7   FRAFIFVSGLFIASVIAGFLPLIFASFIAFGAV----TVMSRKLVSSGSQSSRSHTIAIT 62

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG--MWASELWTKHLSH 129
            L +V +  L   G+       SK++  + +  P+ + +++I      WA +  ++ L  
Sbjct: 63  ILAVVVVAILTGIGLG-----TSKLLHESNNLRPLAKEITNILDSANSWAPDWLSELLPE 117

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
              L   +  ++K N         +     G   L   +  +  + +         +I  
Sbjct: 118 QDELLSHTSNWIKENSAKISHAGIATLKTVGYTLLGLIIGAMVAVNS---------AIKS 168

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVAL 244
                   L  A  +++      V+ +      +      + L     + G+  P    L
Sbjct: 169 NNRGPHAMLVFAQVRRLYEAFWSVVGAQIKISALNTALTAMYLLIYLPVVGLHLPLAKTL 228

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            V+T I  ++P    +      + L +      A     +  + +  ++  +    VG  
Sbjct: 229 VVVTFIAGLLPVVGNLISNTAIVLLSLTHGFLVAMSSLAF-LVVIHKLEYFINARFVGER 287

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           I          L+     +G+ G+  GP+  A + V W  + +A+ 
Sbjct: 288 INAKPFEILIVLIVAEHLIGVPGVVAGPIFYAWLKVEWARADLALP 333


>gi|219684894|ref|ZP_03539836.1| membrane protein [Borrelia garinii PBr]
 gi|219671839|gb|EED28894.1| membrane protein [Borrelia garinii PBr]
          Length = 362

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 108/320 (33%), Gaps = 27/320 (8%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I+ I + +    +  F P+  ++++GF  +P+Y+     K                  
Sbjct: 23  IVIVLIFIGAFKIAEAVFKPLAISIVLGFLVYPVYTFLARFK------------------ 64

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             VP   + +     +      +     + + V   +  +P          K +      
Sbjct: 65  --VPKFLIVFIIFFLLFSFSYLIFSFVYYSVTVL--MRQLPYYQNQLAFIMKDVLSRY-- 118

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           K+ S      N  D+I  F +R     + +  S++ + + L+F   +      +LD   +
Sbjct: 119 KVDSSVINDINFSDYIYPFLTRASNEIIGFTSSLVVVFLLLYFLLSEIHVFGMKLDKAFK 178

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                 +      +   I        +++   G+++     L G    +   V+T +   
Sbjct: 179 KRVSTRFIVALDTINNQIGKYLGIKILMSCLTGILVFIGLTLFGQDFPLVWAVLTFVFNF 238

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCL--FLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           IP  G+ ++   + I  LI+        L  F++      ++   L P + G  + +   
Sbjct: 239 IPSIGSILAVFFIVITSLIQFYPNLNIVLYIFIYNTSVQMLIGNILEPKMQGKRLDISPF 298

Query: 311 PTFFGLVGGVRTMGLLGLFI 330
                L       G++GL I
Sbjct: 299 LLLCFLFFWGWLWGIVGLLI 318


>gi|224531876|ref|ZP_03672508.1| membrane protein [Borrelia valaisiana VS116]
 gi|224511341|gb|EEF81747.1| membrane protein [Borrelia valaisiana VS116]
          Length = 362

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 71/200 (35%), Gaps = 3/200 (1%)

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           KI S      N   +I  F +R     + +  S++ + + L+F   +      +LD   +
Sbjct: 119 KIDSSVINNMNFSGYIYPFLTRASNEIIGFTSSLVVVFLLLYFLLSEIHVFGMKLDKAFK 178

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                 +      +   I        +++   G+++     L G    +   V+T +   
Sbjct: 179 KPVSTRFIGALDTINNQIGKYLGIKILVSCLTGILVFIGLTLFGQDFPLVWAVLTFVFNF 238

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCL--FLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           IP  G+ ++   + I  LI+        L  F++      ++   L P + G  + +   
Sbjct: 239 IPSIGSILAVFFIVITSLIQFYPNLNIVLYIFIYNTSVQMLIGNILEPKMQGKRLDISPF 298

Query: 311 PTFFGLVGGVRTMGLLGLFI 330
                L       G++GL I
Sbjct: 299 LLLCFLFFWGWLWGIVGLLI 318


>gi|82541718|ref|XP_725080.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23479952|gb|EAA16645.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 856

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 71/209 (33%), Gaps = 16/209 (7%)

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
             F M   D  +  +    AL++      S+   L  L   + P+        + K +++
Sbjct: 345 LNFFMFTFDAIIQAMIFFTALYYLTLSKKSVLNYLKDLLLVVDPSSI--FFYNITKSLKA 402

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP--ISFTAVSIYLLI 271
             +          + +   +     P      ++  I+++IP  +P  +    V    +I
Sbjct: 403 IIICTLKRIYFYTMYIWLIFSFFQFPIIYVPTLMCMILSLIPIISPEILILIIVLHLWII 462

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLR---PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           +     +  LF+           T+    P+       +        L   + T G  G+
Sbjct: 463 QKQKIISVILFIVNFFIYLYFTTTIYTEIPY-------IHAWLVSLSLFLSITTFGSKGV 515

Query: 329 FIGPVLMALIAVIWKESIMAIKENKEKIS 357
            +GP + ++  ++ + +I   K N E I 
Sbjct: 516 ILGPFIASIPLILHQIAIN--KNNAENIQ 542


>gi|148359604|ref|YP_001250811.1| permease [Legionella pneumophila str. Corby]
 gi|148281377|gb|ABQ55465.1| transporter, permease [Legionella pneumophila str. Corby]
          Length = 352

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 73/202 (36%), Gaps = 4/202 (1%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF-PAYWKK 202
            G+       + +G+       +++  +  +F  + +    +Q++D+           K 
Sbjct: 124 QGLSIQSMLVNIYGVFTTITSSAVLISLYVVF-LFVEQHYFTQKMDAFFPQAEHRKLVKN 182

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           I   + K  ++     T++++    +        G+       ++   +  IP    I  
Sbjct: 183 IISHITKDTQTYLGIKTLLSLLTATLSWFIMKWVGLDFAEFWALLIFFLNYIPNIGAIVA 242

Query: 263 T--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
           T    ++ L+   + +    +        F V   L P L+G  + L  L   F L    
Sbjct: 243 TAFPAALALIQFESWWPFLEVTSGIVAIQFFVGNFLEPRLLGKSLNLSPLVILFALALWG 302

Query: 321 RTMGLLGLFIGPVLMALIAVIW 342
              G+LG+F+   +  ++ +I+
Sbjct: 303 AIWGVLGMFLSVPITVMMMIIF 324


>gi|218514462|ref|ZP_03511302.1| putative permease protein [Rhizobium etli 8C-3]
          Length = 62

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/36 (63%), Positives = 27/36 (75%)

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           GGV+TMG LGLFIGPVLMALI  IW+E I   +  +
Sbjct: 1   GGVKTMGFLGLFIGPVLMALIVAIWREWIHEARNAE 36


>gi|56479402|ref|YP_160991.1| hypothetical protein ebA6963 [Aromatoleum aromaticum EbN1]
 gi|56315445|emb|CAI10090.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 393

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 104/302 (34%), Gaps = 17/302 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +++ +  + ++ +      V + +++G     +     +    S      +  V++  +
Sbjct: 49  VLLIVVFGLLVWTVADVLLLVFAGVLVGVFLRGLGDGVSALTGLSGRVSFGVVLVTLAAV 108

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            IV    L      ++ +L   + LA +        L+ + G  W   L+++   +  ++
Sbjct: 109 LIVGGALLGNEMASQLDQLGPSLHLAWEKM------LNGVYGYEWGRILFSER--NLSAM 160

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                T+L   G  F     +  G++   +          +   YR G      L  L  
Sbjct: 161 LPEDGTWLTRLGDAFSMTIGAIAGLLIAVFIGVYGAATPTV---YRHG------LLLLAP 211

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
               +  +++   V   +R   +G        GL +    WL  +   +ALG+I  I+  
Sbjct: 212 AHARSRAREVLDTVTTTMRWWLIGTFARMAVVGLSVTVGLWLLDIQLALALGLIAFILDF 271

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +P   P+     ++ + I     +A  + L         +  + P +    + LP   T 
Sbjct: 272 VPYIGPVLAALPALLVAIATGPADAFYVLLLYLAVQMAENYVVTPLIDQYSVHLPPALTI 331

Query: 314 FG 315
             
Sbjct: 332 SA 333


>gi|157363171|ref|YP_001469938.1| hypothetical protein Tlet_0304 [Thermotoga lettingae TMO]
 gi|157313775|gb|ABV32874.1| protein of unknown function UPF0118 [Thermotoga lettingae TMO]
          Length = 321

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 70/213 (32%), Gaps = 4/213 (1%)

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           TN        A       L Y  S+I  ++ +        ++ + +    + LFP   +K
Sbjct: 109 TNLGKSFSDIALTIVNKLLGYVPSLITALVIVVITTLIVGNLKKVVSKKLDKLFPENPEK 168

Query: 203 ISRIVPKVIR---STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
                    R       G  ++A   G  +G    +  +PS + LGV+  I   IP    
Sbjct: 169 GIYFAKTTYREFERFVAGQVLVAAFVGFFVGVMSLIFKIPSAIFLGVLAFITDFIPYLGV 228

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK-TLRPFLVGGPIKLPFLPTFFGLVG 318
           I      + L    +      + +   +    ++   L P +    +K+ +      ++ 
Sbjct: 229 IISAIPLLMLGFASHGLKGLIIGVLILLSANQLEMWFLAPKIQSNALKIHWFFILIAILL 288

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
               +G  G+F+    +  +   W + +     
Sbjct: 289 FGDVIGFGGIFVALPTLIYVKNFWNQYVSKSPH 321


>gi|313634634|gb|EFS01105.1| YubA [Listeria seeligeri FSL N1-067]
          Length = 215

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 58/168 (34%), Gaps = 5/168 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            LK   AP++ A I  +   P+      KK +    +A++  V +  + ++   F+    
Sbjct: 47  ILKTVAAPIVLAGISYYLFNPVIDWLEKKKWKRGWAIALLYVVIIGLIILL-FSFVIPAV 105

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++  L             + +  ++        +L  K  ++   +         +  
Sbjct: 106 KDQIVSLFKTFPGY---WDQITQKFNEFSQSSLFDQLKDKLSTNMSDIMKTLSEKGTSVL 162

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
              I    S  G +  +  L+I+   + LF+  +DG  +   L  +  
Sbjct: 163 NSAITSVGSIVGTVT-EVVLAIVTTPLVLFYLLKDGKKLPDFLLKMLP 209


>gi|261334493|emb|CBH17487.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 706

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 88/252 (34%), Gaps = 32/252 (12%)

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI--IALFFFYRDG 181
            K +   Q L + +   L   G + +  F S + ++ L   +  +  +    L++     
Sbjct: 462 QKLMERWQELFVYANQLLMKLGSNVLNLFDSVYAVMLLFVVMHHLLQLEHTVLYYIL--- 518

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
              ++ L  L       + +KI   +     +        A     +    +     P+ 
Sbjct: 519 ---AKLLKVLDPQCGEYHARKIETEITNSFHTLLQSFWHKACFRFCITFCLFKCWSFPTP 575

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIK------GNIFNATCL--FLWGAIELFIVD 293
           +  GV++A++A++P  AP   + V++  + K      G+ F A      LW     F   
Sbjct: 576 LLFGVVSAVIALLPL-APKWISPVALTFMYKLFCAAYGDGFAAALADPCLWCCFLAFCAT 634

Query: 294 KTLRPFLVGGPI---------------KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
                 L                    KLP       LV G    G+ G+F+GP+ + L 
Sbjct: 635 YMDERLLCVSQGFLDDRSSVASAPGQWKLPTAVISTALVLGFFQYGVCGIFLGPMTVVLA 694

Query: 339 AVIWKESIMAIK 350
            V++     A++
Sbjct: 695 KVLYDNWDTAME 706


>gi|281357836|ref|ZP_06244322.1| protein of unknown function UPF0118 [Victivallis vadensis ATCC
           BAA-548]
 gi|281315783|gb|EFA99810.1| protein of unknown function UPF0118 [Victivallis vadensis ATCC
           BAA-548]
          Length = 656

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 6/126 (4%)

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS--FTAVSIY 268
           +R    G   + + +  V  +A++  GVP    LG++     ++P   PI      V + 
Sbjct: 496 LRVWVRGYLTLMLVDATVYTTAFFFLGVPYFPILGMLAGCGILLPYIGPILSAMLTVLVT 555

Query: 269 LLIKGNIFNA---TCLFLWGAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           L + G+         +     I   +++   L P ++G  + L  L T   ++ G    G
Sbjct: 556 LAVGGSSATGAQLAAIIAVYLIYNGVIEQFILYPAVIGESLGLTTLETIIVVLLGAIFAG 615

Query: 325 LLGLFI 330
           + G+ +
Sbjct: 616 IPGMIL 621


>gi|54294930|ref|YP_127345.1| hypothetical protein lpl2009 [Legionella pneumophila str. Lens]
 gi|54297959|ref|YP_124328.1| hypothetical protein lpp2014 [Legionella pneumophila str. Paris]
 gi|296107646|ref|YP_003619347.1| Predicted permease [Legionella pneumophila 2300/99 Alcoy]
 gi|53751744|emb|CAH13166.1| hypothetical protein lpp2014 [Legionella pneumophila str. Paris]
 gi|53754762|emb|CAH16249.1| hypothetical protein lpl2009 [Legionella pneumophila str. Lens]
 gi|295649548|gb|ADG25395.1| Predicted permease [Legionella pneumophila 2300/99 Alcoy]
 gi|307610760|emb|CBX00371.1| hypothetical protein LPW_20931 [Legionella pneumophila 130b]
          Length = 352

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 73/202 (36%), Gaps = 4/202 (1%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF-PAYWKK 202
            G+       + +G+       +++  +  +F  + +    +Q++D+           K 
Sbjct: 124 QGLSIQSMLVNIYGVFTTITSSAVLISLYVVF-LFVEQHYFTQKMDAFFPQAEHRKLVKN 182

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           I   + K  ++     T++++    +        G+       ++   +  IP    I  
Sbjct: 183 IISHITKDTQTYLGIKTLLSLLTATLSWFIMKWVGLDFAEFWALLIFFLNYIPNIGAIVA 242

Query: 263 T--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
           T    ++ L+   + +    +        F V   L P L+G  + L  L   F L    
Sbjct: 243 TAFPAALALIQFESWWPFLEVTSGIVAIQFFVGNFLEPRLLGKSLNLSPLVILFALALWG 302

Query: 321 RTMGLLGLFIGPVLMALIAVIW 342
              G+LG+F+   +  ++ +I+
Sbjct: 303 AIWGVLGMFLSVPITVMMMIIF 324


>gi|15594352|ref|NP_212140.1| hypothetical protein BB0006 [Borrelia burgdorferi B31]
 gi|225549302|ref|ZP_03770275.1| membrane protein [Borrelia burgdorferi 94a]
 gi|8928456|sp|O51039|Y006_BORBU RecName: Full=UPF0118 membrane protein BB_0006
 gi|2687886|gb|AAC66397.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi B31]
 gi|225370160|gb|EEG99600.1| membrane protein [Borrelia burgdorferi 94a]
          Length = 374

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 46/320 (14%), Positives = 107/320 (33%), Gaps = 27/320 (8%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I+ I + +    +  F P+  ++++GF  +P+Y+     K                  
Sbjct: 35  IVIVLIFIGAFKIAEAVFKPLAISIVLGFLVYPVYTFLARFK------------------ 76

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             VP   + +     +      +     + + V   +  +P          K +      
Sbjct: 77  --VPKFLIVFIIFFLLFSFSYLIFSFVYYSVTVL--MKQLPYYQNQLAFIMKDVLSRY-- 130

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           K+ S      N   +I  F +R     + +  S++ + + L+F   +      +LD   +
Sbjct: 131 KVDSSVINDVNFSGYIYPFLTRAYNEIIGFTSSLVVVFLLLYFLLSEIHVFEMKLDKAFK 190

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                 +      +   I        +++   G+++     L G    +   V++ +   
Sbjct: 191 KPISTRFIGALDTINNQIGKYLGIKILVSCLTGILVFIGLTLFGQDFPLVWAVLSFVFNF 250

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCL--FLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           IP  G+ ++   + I  LI+        L  F++      ++   L P + G  + +   
Sbjct: 251 IPSIGSILAVFFIVITSLIQFYPNLNIVLYVFIYNTSIQMLIGNILEPKMQGKRLDISPF 310

Query: 311 PTFFGLVGGVRTMGLLGLFI 330
                L       G++GL I
Sbjct: 311 LLLCFLFFWGWLWGIVGLLI 330


>gi|51598269|ref|YP_072457.1| hypothetical protein BG0006 [Borrelia garinii PBi]
 gi|51572840|gb|AAU06865.1| conserved hypothetical integral membrane protein [Borrelia garinii
           PBi]
          Length = 362

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 52/152 (34%), Gaps = 3/152 (1%)

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
                +LD + +      +      +   I        +++   G+++     L G    
Sbjct: 167 HVFGMKLDKVFKKRVSTRFIGALDTINNQIGKYLGIKILMSCLTGILVFIGLTLFGQDFP 226

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCL--FLWGAIELFIVDKTLRP 298
           +   V+T +   IP  G+ ++   + I  LI+        L  F++      ++   L P
Sbjct: 227 LVWAVLTFVFNFIPSIGSILAVFFIVITSLIQFYPNLNIVLYIFIYNTSVQMLIGNILEP 286

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            + G  + +        L       G++GL I
Sbjct: 287 KMQGKRLDISPFLLLCFLFFWGWLWGIVGLLI 318


>gi|218659944|ref|ZP_03515874.1| hypothetical protein RetlI_09987 [Rhizobium etli IE4771]
          Length = 213

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/204 (10%), Positives = 60/204 (29%), Gaps = 6/204 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  Q      ++   +  LY       P ++ + I +   P+      +   S     ++
Sbjct: 10  LKRQIFFWLAVLVFFIAFLYVFSSILLPFIAGMAIAYFLDPVADRL-QRLGLSRMMATIV 68

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             ++ +  F + L+ L      +  +   ++               +     W       
Sbjct: 69  ILIAFVITFTLALMILIPVLASQFNDFAERMPGYISQLQQFIDNSKNSLLPEWVRSQAGT 128

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
              +   +      FL       +       G   +D    ++   +  F+   D   + 
Sbjct: 129 IKDNFSGILSEGMGFLTG-----LFAQIWNSGKAIVDVISLLVVTPVVAFYILLDWDRMV 183

Query: 186 QQLDSLGEHLFPAYWKKISRIVPK 209
            ++D      + A  ++I++ + +
Sbjct: 184 AKVDQWIPRDYVADVRQIAKEIDQ 207


>gi|153873737|ref|ZP_02002218.1| permease PerM [Beggiatoa sp. PS]
 gi|152069796|gb|EDN67781.1| permease PerM [Beggiatoa sp. PS]
          Length = 294

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 82/272 (30%), Gaps = 11/272 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           +PQ ++  +++      L  +    AP+L++L+I +    +           +     I 
Sbjct: 24  DPQAVLLAILLLTSFTILMTMSEMLAPILASLVIAYLLDGLIQGLQRSHLPRA-LAVFII 82

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
             + + L +  ++ L      +   LV  +      G  +   L D+P            
Sbjct: 83  YSTFITLLVFIIVVLLPLVSYQFTLLVQALPKMIAQGNQL---LKDLPEQYPIIS----- 134

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            +  + +    +        + +  ++       +   +  I + + +FFF  D   I  
Sbjct: 135 ATSIEGIIKSLQQRADKLVQEIVLSYSISSIPTVIALVIYSILVPLLVFFFLNDKEKILN 194

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L            + I   +   + +   G        G      +    +     L V
Sbjct: 195 WLAGFLPK-ERTAARNIWTEMDAQMGNYIRGKVYEIFLVGTFTYFPFAYLNLNFASLLAV 253

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFN 277
           +  +  +IP  GA +    V      +  I  
Sbjct: 254 LVGLSVIIPYVGAVVITFPVVAVAYFQWGITP 285


>gi|71755395|ref|XP_828612.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70833998|gb|EAN79500.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 690

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 88/252 (34%), Gaps = 32/252 (12%)

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI--IALFFFYRDG 181
            K +   Q L + +   L   G + +  F S + ++ L   +  +  +    L++     
Sbjct: 446 QKLMERWQELFVYANQLLMKLGSNVLNLFDSVYAVMLLFVVMHHLLQLEHTVLYYIL--- 502

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
              ++ L  L       + +KI   +     +        A     +    +     P+ 
Sbjct: 503 ---AKLLKVLDPQCGEYHARKIETEITNSFHTLLQSFWHKACFRFCITFCLFKCWSFPTP 559

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIK------GNIFNATCL--FLWGAIELFIVD 293
           +  GV++A++A++P  AP   + V++  + K      G+ F A      LW     F   
Sbjct: 560 LLFGVVSAVIALLPL-APKWISPVALTFMYKLFCAAYGDGFAAALADPCLWCCFLAFCAT 618

Query: 294 KTLRPFLVGGPI---------------KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
                 L                    KLP       LV G    G+ G+F+GP+ + L 
Sbjct: 619 YMDERLLCVSQGFLDDRSSVASAPGQWKLPTAVISTALVLGFFQYGVCGIFLGPMTVVLA 678

Query: 339 AVIWKESIMAIK 350
            V++     A++
Sbjct: 679 KVLYDNWDTAME 690


>gi|119386571|ref|YP_917626.1| hypothetical protein Pden_3864 [Paracoccus denitrificans PD1222]
 gi|119377166|gb|ABL71930.1| protein of unknown function UPF0118 [Paracoccus denitrificans
           PD1222]
          Length = 356

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 52/338 (15%), Positives = 115/338 (34%), Gaps = 29/338 (8%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q     +I F +++ L     F    L   ++    + + S  IS          +  T+
Sbjct: 13  QTGFLGVIAFGLILFLLVQARFILICL---VLAIIIFSLTSDAISAFARLKVPNWLATTL 69

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +++ + +  LL+     + ++ E+VS  ++           L         S+ W  ++ 
Sbjct: 70  ALIAIAVG-LLWAATALVAQVNEVVSTSIVYADRAQAALARL---------SQRWGPNVQ 119

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 + S  F       +I   A++   +           +I  F  +     I   +
Sbjct: 120 EAIGTFMASIDFAG-----WIRSAAAQASNLISGSV------LILTFVGFMFSERIWFPI 168

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA---GVPSHVALG 245
                   P   +++   V K++R     + + A    +  G  + +    G+    A+ 
Sbjct: 169 KIERLTGDPDQARQVLETVHKIMRRVNRYLVVKAAISAVTAGLIWTIFRVQGLELAGAVA 228

Query: 246 VITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           ++T I+  IP    I+     +++ L   G+      +        FI+     P L+G 
Sbjct: 229 MLTFILNFIPTLGSIAATVITIAMVLAQTGDPTVTLTVGGLTVAVQFIIGNVFDPMLLGQ 288

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            ++L        L       G+ G F+   +M  I ++
Sbjct: 289 TLRLSSFGIVLSLAFWGVVWGIAGTFLAVPIMVAIMIV 326


>gi|167835399|ref|ZP_02462282.1| hypothetical protein Bpse38_02841 [Burkholderia thailandensis
           MSMB43]
          Length = 361

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 85/272 (31%), Gaps = 10/272 (3%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +A V +    +  L  L    +   +  V          + +    +      W S L  
Sbjct: 88  LAVVLLSAAIVGGLAGLTIAVIEHFEHAVPNAQNLLGQVMQIVDQ-ARTRTPEWISNLLP 146

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                 ++      +             A  FG +     +  +  I        D   +
Sbjct: 147 VDAEQMRAKATGLMSKHMDQLQQGGKSVARGFGHVLFGMIIGAMIAIGV------DRHKL 200

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            Q L +        +     RIV   I+ + L     A+   L++    +   +P    L
Sbjct: 201 RQPLSTALVTRISRFSDAFRRIVFAQIKISALNAFFTALY--LLVALPLFHQRLPLSKTL 258

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            ++T I  ++P    +    + + + +  ++  A    ++  I +  ++  L   ++GG 
Sbjct: 259 VLVTFIAGLLPVVGNLISNTLIVAVSLSVSMGTAIASLVF-LIVIHKLEYFLNAKIIGGQ 317

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
           I+         ++      G+ G+   P+  A
Sbjct: 318 IESRAWELLLAMLVMEAAFGVPGVIAAPIFYA 349


>gi|16127109|ref|NP_421673.1| hypothetical protein CC_2877 [Caulobacter crescentus CB15]
 gi|221235907|ref|YP_002518344.1| hypothetical protein CCNA_02971 [Caulobacter crescentus NA1000]
 gi|13424493|gb|AAK24841.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 gi|220965080|gb|ACL96436.1| hypothetical membrane spanning protein [Caulobacter crescentus
           NA1000]
          Length = 342

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 36/337 (10%), Positives = 95/337 (28%), Gaps = 27/337 (8%)

Query: 9   QGIMRWMIMFIILVS-LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +    +++ F +    LY       P   AL++      +    +    ++  +      
Sbjct: 3   KTGASFLVNFAVAAGLLYVFSAVLWPFTLALVLAILITSLSDRVVRLLPKARPW----MV 58

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
            ++  + +  ++      ++     + + + A    I     L  +PGG   S       
Sbjct: 59  FAITAVIVGGIIVASMAVVIGGGARIVERMPAMMARIDQLLALIHLPGGGVMSLAALAQK 118

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                L     T ++             F ++                        I ++
Sbjct: 119 VELGPLADGLLTSVQNASAGLGLTLIFLFFLLLSK-------------------PMIEKR 159

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +D +           +       +       +I  +             G+ S +   ++
Sbjct: 160 IDQIVASRGGQGLAMVLERSFSGVERYMYVQSITGLMIAFGSWVVMRAVGLESALFWSLV 219

Query: 248 TAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
             + A +P    ++         LL    +  A  +F+   +   IV   + P +     
Sbjct: 220 IFLFAYLPVLGVLAGSVGPTLFALLQFPTLTPAIAIFVGIQVVSSIVGNLVLPKMQADSQ 279

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVI 341
            +    +   +       G+ G F+  P+ +AL+  +
Sbjct: 280 NIDPAASLIAVGMWTVLWGVPGAFLAIPLTLALMYAL 316


>gi|146280791|ref|YP_001170944.1| hypothetical protein PST_0396 [Pseudomonas stutzeri A1501]
 gi|145568996|gb|ABP78102.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
          Length = 356

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 60/218 (27%), Gaps = 6/218 (2%)

Query: 96  VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASR 155
              A+     +P  +  +           + L     L         ++    + +    
Sbjct: 96  AEQADALSDSLPEAVERLRERAEQLPWANELLQQSDRLADSLPE--GSSAFSVVTKVMGS 153

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
                  + ++    I        D       L  L    +     ++       +R+  
Sbjct: 154 VAGALSSFVIAFAIGIC----LAIDPRVYRSGLLKLVPQGYRPRAAEVLDESGATLRAWL 209

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNI 275
           L   +  +  G++     WL G+   + LG+I  +++ IP   P+     ++ L      
Sbjct: 210 LAKLLEMLLIGVLTTLGLWLLGIELALVLGLIAGLLSFIPNIGPVLAVIPALLLASLEGG 269

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
                +         +      PF+    + +P   T 
Sbjct: 270 RTVLYVAGLYLFVQALESYVFTPFMQQRIVSIPPALTI 307


>gi|330948977|gb|EGH49237.1| hypothetical protein PSYPI_45513 [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 54

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 30/54 (55%)

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +P+L+     LP +    G+ GG+   G +GLFIGP L+A+   +  + + + +
Sbjct: 1   KPYLISRGGNLPLVIVLLGVFGGLLAFGFIGLFIGPTLLAVAYSLLTDWVGSER 54


>gi|254432666|ref|ZP_05046369.1| conserved domain protein, putative [Cyanobium sp. PCC 7001]
 gi|197627119|gb|EDY39678.1| conserved domain protein, putative [Cyanobium sp. PCC 7001]
          Length = 353

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/288 (10%), Positives = 92/288 (31%), Gaps = 12/288 (4%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY---GMLEMK 90
           + +A+++      +      +         +++   +  + +V  +         + +  
Sbjct: 29  LFAAVVLAMALCTLVGWVRQRLGCGRPLAVLLS---LGLVSVVAAILATAVIPPFIDQFA 85

Query: 91  ELVSKVVLANQHGIPVPR-WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           ELV+K+  A    + + R W++     ++     +            +   L+   +  +
Sbjct: 86  ELVAKLPAAAATLLSLMRGWIAGASQMLYGRSDGSLDWLREGLFSSGTTENLRGGALQLL 145

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
              A   G   +     +   ++          +  +    L    +   ++++     +
Sbjct: 146 G-LAGGIGSGLVQLLFVVAVALMIT----VQPVAYREIAVLLIPSFYRRRFRRVLIHCGE 200

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            + +   G+ I ++  G++      L  V    A  V+  ++ +IP   P   T   + +
Sbjct: 201 ALSAWMGGVLISSLCVGVLAAIGLSLLDVKLVAANAVLAGLLNIIPNIGPTLSTIFPMSV 260

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            +  +   A  + L       +    + P ++   + L    T    +
Sbjct: 261 ALLDSPLKALAVLLLYVGVQNLESYLITPSVMQHQLDLLPGLTLTAQL 308


>gi|332142622|ref|YP_004428360.1| transport protein [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552644|gb|AEA99362.1| transport protein [Alteromonas macleodii str. 'Deep ecotype']
          Length = 302

 Score = 46.0 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 77/214 (35%), Gaps = 7/214 (3%)

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLD----YCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           ++     +  D I +     G+            ++  ++ +FF    G ++        
Sbjct: 74  AQPDTSNSVTDKIKQSGINMGITLFSNAPFLLAQVMACVVLIFFLLVFGPNLFHVFIRDF 133

Query: 193 EHLFPAYWKK-ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
             +        +   + + + +  + ++II    GL    A++   +   +  G + A+M
Sbjct: 134 PVVTDKRRALVLVDQIQRELSAYIVTISIINTCLGLATAGAFYYLNIEDALLWGALVALM 193

Query: 252 AMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
             +P  GG   S   + + ++  G   +A            I  + + P ++G  ++L  
Sbjct: 194 NFVPYLGGIASSMVLLVVGVVQFGLTSSAFLPAGVFLFLNIIESQLITPAVLGRSMQLNP 253

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L     +       G++G+ +   ++  + +I +
Sbjct: 254 LIIIIWIAITGWLWGVVGVLLAVPILMCVKIILE 287


>gi|325290750|ref|YP_004266931.1| sporulation integral membrane protein YtvI [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324966151|gb|ADY56930.1| sporulation integral membrane protein YtvI [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 368

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 55/352 (15%), Positives = 130/352 (36%), Gaps = 13/352 (3%)

Query: 8   PQGIMRWMIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
            + ++   I+   +   Y L     FF P + A +      P  +  ++K     +    
Sbjct: 18  KKVLITVGILLATVAIPYVLMKTFPFFLPFILAYVTALFLEPAIAFMVNKWSFQRSLA-- 75

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
             T+  +    +  +  ++       E+++ +    +H I        +    +    ++
Sbjct: 76  -VTLIYLIFVGILAVLAYFITHKIYLEILNVISYFQEHSIQTLSNQFLLTWKGYVGNTYS 134

Query: 125 KHLSH-----PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              +       + +     +    N    I  + S F +   ++    +   I++F F +
Sbjct: 135 LLPAEVIIRINEGVSQFVNSLASLNIAANIVAYTSAFSLKIPNFFFDSLIYFISVFLFCQ 194

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
              S+   L  L  +        +   + + +    +   I++    LV      L G+ 
Sbjct: 195 TLTSMHSWLFGLFRYSSKKKIIVVLSDLRRALLGFIIAHFILSAVTLLVSFIGLTLLGIK 254

Query: 240 SHVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             V+LG I  I   IP       +   ++   I+G IF  T L +   + + ++ K + P
Sbjct: 255 FKVSLGFIIFIFDFIPIIGISTIYFIWALLSFIQGEIFLGTGLLVLLVLAI-VIRKIIEP 313

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            ++   + L  L T   +  G++T+G++G+ + P+ + LI  + K  ++  K
Sbjct: 314 KVLSEQLGLSALTTLICIWVGLKTLGIVGVILFPLTLILIKTLIKVGLIDYK 365


>gi|315618787|gb|EFU99370.1| conserved hypothetical protein [Escherichia coli 3431]
          Length = 294

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 85/284 (29%), Gaps = 22/284 (7%)

Query: 48  YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
               +  +      ++++ T+ VM + ++ L +L        + L             + 
Sbjct: 1   MQHMVRWRVPRVLAVSILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQALE 59

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
             L  +   +   +L      +     + +     +N +  I         + L+     
Sbjct: 60  PLLQRVGIDVSVDQLAHYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV---- 115

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
                           +  +   +     P       +     +    +  T I+I  GL
Sbjct: 116 --------------PQLPGKFQQMMAR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGL 159

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           V  +      V      G++   +  IP  G+ ++       +L+    + A  +     
Sbjct: 160 VAWAMLAALDVRFAFVWGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYL 219

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +   +    L P ++G  + L  L  F  L+     +G +G+ +
Sbjct: 220 LINLVFGNILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLL 263


>gi|193070227|ref|ZP_03051171.1| inner membrane protein YdgG [Escherichia coli E110019]
 gi|192956408|gb|EDV86867.1| inner membrane protein YdgG [Escherichia coli E110019]
          Length = 294

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 85/284 (29%), Gaps = 22/284 (7%)

Query: 48  YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
               +  +      ++++ T+ VM + ++ L +L        + L             + 
Sbjct: 1   MQHMVRWRVPRVLAVSILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQALE 59

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
             L  +   +   +L      +     + +     +N +  I         + L+     
Sbjct: 60  PLLQRVGIDVSVDQLAHYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV---- 115

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
                           +  +   +     P       +     +    +  T I+I  GL
Sbjct: 116 --------------PQLPGKFQQMMAR--PVEGMAAIQRAIDSVSHYLVLETAISIITGL 159

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           V  +      V      G++   +  IP  G+ ++       +L+    + A  +     
Sbjct: 160 VAWAMLAALDVRFAFVWGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYL 219

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +   +    L P ++G  + L  L  F  L+     +G +G+ +
Sbjct: 220 LINLVFGNILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLL 263


>gi|296089963|emb|CBI39782.3| unnamed protein product [Vitis vinifera]
          Length = 502

 Score = 46.0 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 69/223 (30%), Gaps = 10/223 (4%)

Query: 143 TNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
             G+ F+               ++          L++          +       +   Y
Sbjct: 284 GGGMKFMVSIGESIISGAAEVFNFVSQSAVFFWVLYYLITSESGGVTEQAMSLIPMPKLY 343

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGA 258
             +   ++   I    L    IA  +G +    + L  +       ++  I  ++P   +
Sbjct: 344 RDRCVAVLDNAISGVLLATAEIAFFQGCLTWLLFRLYSIHFLYMSTILAIISPLLPIFPS 403

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            ++    +I L+++     A  L +     +      ++  + G         T   ++G
Sbjct: 404 WVATIPATIQLVLESRYILAITLSVIHLALMEYGASEIQEDIPGYSA----YLTGLSIIG 459

Query: 319 GVRTM--GLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G+      L G  +GP++  ++  + +     + +  ++    
Sbjct: 460 GMTLFPSALEGAIMGPLITTVVIGLKELYTEFVLDGPKQGEEE 502


>gi|224533964|ref|ZP_03674549.1| membrane protein [Borrelia burgdorferi CA-11.2a]
 gi|225549773|ref|ZP_03770738.1| membrane protein [Borrelia burgdorferi 118a]
 gi|224512967|gb|EEF83333.1| membrane protein [Borrelia burgdorferi CA-11.2a]
 gi|225369733|gb|EEG99181.1| membrane protein [Borrelia burgdorferi 118a]
          Length = 374

 Score = 46.0 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 46/320 (14%), Positives = 107/320 (33%), Gaps = 27/320 (8%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I+ I + +    +  F P+  ++++GF  +P+Y+     K                  
Sbjct: 35  IVIVLIFIGAFKIAEAVFKPLAISIVLGFLVYPVYTFLARFK------------------ 76

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             VP   + +     +      +     + + V   +  +P          K +      
Sbjct: 77  --VPKFLIVFIIFFLLFSFSYLIFSFVYYSVTVL--MKQLPYYQNQLAFIMKDVLSRY-- 130

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           K+ S      N   +I  F +R     + +  S++ + + L+F   +      +LD   +
Sbjct: 131 KVDSSVINDVNFSGYIYPFLTRAYNEIIGFTSSLVVVFLLLYFLLSEIHVFEMKLDKAFK 190

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                 +      +   I        +++   G+++     L G    +   V++ +   
Sbjct: 191 KPISTRFIGALDTINNQIGKYLGIKILVSCLTGILVFIGLTLFGQDFPLVWAVLSFVFNF 250

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCL--FLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           IP  G+ ++   + I  LI+        L  F++      ++   L P + G  + +   
Sbjct: 251 IPSIGSILAVFFIVITSLIQFYPNLNIVLYVFIYNTSIQMLIGNILEPKMQGKRLDISPF 310

Query: 311 PTFFGLVGGVRTMGLLGLFI 330
                L       G++GL I
Sbjct: 311 LLLCFLFFWGWLWGIVGLLI 330


>gi|111020752|ref|YP_703724.1| hypothetical protein RHA1_ro03766 [Rhodococcus jostii RHA1]
 gi|110820282|gb|ABG95566.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 377

 Score = 46.0 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 48/315 (15%), Positives = 106/315 (33%), Gaps = 21/315 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + + L +L        PV  ALI+     PI ++   +      +L +I  +  +   ++
Sbjct: 29  LVVALGALKAFADIVGPVFLALILTVAVQPIPNALRRRGW--PGWLVMIVAILAVWGILL 86

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L+    + + ++  L+ +        +                      L         
Sbjct: 87  FLVLALVFSIAQLSTLLPEYSDKFDEMV----------------GNVQSGLQSHGIGSDQ 130

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +  +    +  +           L    +++F+   L F   D  + + +L++L   L 
Sbjct: 131 VQQMIAGIDMSKVTDLVGDILAGTLAVFSNLLFVFALLLFMSADAATYTWRLNTLN-RLR 189

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
           P      +      +   F+      +   ++   A WL G+P  +  G+++ I   IP 
Sbjct: 190 PDLASAFTNFAAGTLIYLFVSTFF-GLIVAVLDARALWLMGIPLPILWGLLSFITNYIPN 248

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G  I     ++  L+ G       + +  +    ++   ++P  VG  + L    TF  
Sbjct: 249 IGFIIGLIPPALLALLDGGPVLMLWVIVVYSALNVLIQSVIQPKFVGDAVGLTVTFTFLS 308

Query: 316 LVGGVRTMGLLGLFI 330
           LV     +G LG  +
Sbjct: 309 LVLWSWVLGPLGAIL 323


>gi|126659576|ref|ZP_01730707.1| hypothetical protein CY0110_06214 [Cyanothece sp. CCY0110]
 gi|126619119|gb|EAZ89857.1| hypothetical protein CY0110_06214 [Cyanothece sp. CCY0110]
          Length = 345

 Score = 46.0 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 46/339 (13%), Positives = 112/339 (33%), Gaps = 18/339 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIG-FTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           ++++ + +  L+ +K     + +A+II  F +  +   F  K      +  +++ + ++ 
Sbjct: 9   FIVIAVCIYILWNIKQLLLLLFTAVIIANFLNHGVQ--FFQKFRIKRGYAVLLSILLLVA 66

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           +       +      ++ EL   V       I + R+                 L   Q 
Sbjct: 67  IISGFFWLIVPPFAQQLSELFKLVPQGIDQLIIMIRYFIS-----RLDPELINALPSNQK 121

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                +  L     + I           L   L+++ ++        +  +  +    L 
Sbjct: 122 FIEQLQPIL-----ERIAGQGLSVFYTTLGIPLTLLLLLALTLMLLANPDAYRRGFIRLF 176

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
              +      + +   + ++     +    +   L+      L  +P  +A  ++T I+ 
Sbjct: 177 PSFYRKKIDYVLKECDRSLQGGLTMILCQMVMISLLSFIGLSLLKMPLTLAQAMLTGILT 236

Query: 253 MIP-GGAPISFTAVSIYLLIKGNI---FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            IP  G  +SF       L++             ++  I      K L P ++     L 
Sbjct: 237 FIPNIGIVLSFIPPVAIALLESQWKSITIFILYVIFYIIIRITEHKLLAPLVIENRKSLL 296

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              T    V      G+LG F+  + +AL++ +W   ++
Sbjct: 297 PAFTLLSQVFFASLFGVLGFFLA-LPLALVSQVWLHEVL 334


>gi|126651377|ref|ZP_01723584.1| hypothetical protein BB14905_12445 [Bacillus sp. B14905]
 gi|126591906|gb|EAZ85989.1| hypothetical protein BB14905_12445 [Bacillus sp. B14905]
          Length = 259

 Score = 45.6 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 66/203 (32%), Gaps = 2/203 (0%)

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
           D I  + +    + + + + +   ++A +F   +               +   W+     
Sbjct: 57  DSIIIYTADLFQLLMKHVIEVFIFLVAYYFALLETRKSRYWFFQYVPKKYRQEWQSHFAN 116

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAV 265
           + ++          +     L+L   + +      +    I A   ++P  G  +    +
Sbjct: 117 IMQLFHYFLYVEFQLFTITLLILCGGFMILQFEQAIIKAFIVAFADVLPFFGIGVFLVPM 176

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           SIY    GN F    + L       +  +     L    ++L    TFF     +   G 
Sbjct: 177 SIYFYFNGNTFLCVAILLLYLFVQ-LTRQLAESMLWSNTLQLRTFHTFFISAASILLFGF 235

Query: 326 LGLFIGPVLMALIAVIWKESIMA 348
            G+ + P+ + L   + + SI  
Sbjct: 236 YGILLSPIFLFLAVKLKENSIFE 258


>gi|108805540|ref|YP_645477.1| hypothetical protein Rxyl_2750 [Rubrobacter xylanophilus DSM 9941]
 gi|108766783|gb|ABG05665.1| protein of unknown function UPF0118 [Rubrobacter xylanophilus DSM
           9941]
          Length = 344

 Score = 45.6 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 50/147 (34%)

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
               +  RD   +      L           +   +   +R   LG  + A+  G   G+
Sbjct: 162 FLALYLARDPGPVVSGFLRLFPEEERGRVSALLGRLEVRLRGWMLGAGLAALVVGAGAGA 221

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
             W  G+P  V  G++ A++  +P    I    + + + +  +   A  +     +   I
Sbjct: 222 GLWALGIPLPVTFGLLAALLNFVPYFGSIVAAVLPVLVALSISPLKALLVAALYVVLNQI 281

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVG 318
               ++P ++G  + L  +      + 
Sbjct: 282 DGNMVQPLVMGREVSLHPVWILVSFLA 308


>gi|86356870|ref|YP_468762.1| putative permease protein [Rhizobium etli CFN 42]
 gi|86280972|gb|ABC90035.1| putative permease protein [Rhizobium etli CFN 42]
          Length = 349

 Score = 45.6 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 42/346 (12%), Positives = 112/346 (32%), Gaps = 17/346 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +  +   + L ++Y +     PV  A+++G     + +  + K        A + + SV
Sbjct: 16  AIIGIFTILGLAAVYMMSLILIPVTLAVVVGMIL-GLAAENLGKMGVPRLANAFLLSSSV 74

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             + ++ +  L         E  + V       +P    +            W       
Sbjct: 75  ALVIVLLVSSLADPLTTLANEAPAFVERTISRIMPYLERIE-----------WLHITPAT 123

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                +S   L  N  + +    +      +   +    +++ L             + +
Sbjct: 124 FESGPMSIGALLENTGNVLHVVTTSLTPALVQGLIFFAALLLFL---ASRVNLRKTIIMT 180

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                      ++   V +V+   F   ++I IG G+V+    + +G+ + V  G    +
Sbjct: 181 FRTRTQRLAAIRVINAVEQVLGFYFATASLIYIGLGVVMTVIAYASGLSAPVLWGFFAFL 240

Query: 251 MAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            + IP  G   ++ +     ++                    +++  + P ++G  +++ 
Sbjct: 241 SSFIPYLGITLMTLSVAIAGIITYDGFIVGLMPAAAFFTVHLVMENLIFPAVMGRRLEIN 300

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
               F  ++      G +G  +   L  ++  I +E ++  K   +
Sbjct: 301 PFIVFLAILFWTWMWGAVGAMLALPLSLIVMTIIEELLIEEKPQPQ 346


>gi|298710168|emb|CBJ31878.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 426

 Score = 45.6 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 64/181 (35%), Gaps = 9/181 (4%)

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
            L +I   +  FF       ++  L  L           +  I+   IR      T++ +
Sbjct: 154 LLKLILSSLEYFFL------VAIFLVYLLISPVKPIKSSVWGIIDLQIRRYIRLKTMVGM 207

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS--FTAVSIYLL-IKGNIFNATC 280
               V+ +  W+ GV      G+IT ++  +P   P+   F  + + +     +  N   
Sbjct: 208 LAATVVTTMLWVLGVQMAYVFGIITFVLNFVPNLGPMIATFLPMPLAIFDPDMSHLNQVL 267

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            F+       ++   + P L G   +L  +     L       G+ G+ +   ++ +  +
Sbjct: 268 AFVLPTTAHLVIGNLVEPGLFGESFELSPVVVLLSLAFWGSLWGIPGMILAVPMVVITRI 327

Query: 341 I 341
           +
Sbjct: 328 V 328


>gi|116490410|ref|YP_809954.1| permease [Oenococcus oeni PSU-1]
 gi|116091135|gb|ABJ56289.1| Predicted permease [Oenococcus oeni PSU-1]
          Length = 347

 Score = 45.6 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 54/341 (15%), Positives = 116/341 (34%), Gaps = 23/341 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  +    ++ +  +++ +Y L+ F   +L   I  + +      F  + +       ++
Sbjct: 8   LKRKDAQLYLTLIFLIIVIYTLRNFIGVILLTTIFSYLAIKASLFFKKQFKVPYLLAVIL 67

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V  + LFI  + +     + ++K + + +  A          + D P      +    
Sbjct: 68  MYVFGLGLFISAITYAAPLLVEQLKVIPNMISKA----------IVDHPYLNKNIDKLIN 117

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
              H   +   S+  L T       R A   G  F      ++  I   F +      + 
Sbjct: 118 QAIHSSEIVSSSKNVLITG-----LREAGHVGTGFTH----VVLAIFLSFVYSTSHNRLL 168

Query: 186 QQLDSLGEHLFPAYWKKI---SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           +      +  +  ++K I   +R    ++        +I     L++     L  +PS +
Sbjct: 169 KFGHEFLKSPYREFFKNIYYLARKFVLILGKIIETQLLICSINTLLMAIGLSLLKMPSLL 228

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L +I  I  ++P  G  IS   + +     G +     + +   +        L P L+
Sbjct: 229 LLTIIIFIFGLVPVAGVLISIIPLGLIAFASGGLIRVAEVIVLVVVIHLFESYFLHPRLM 288

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            G   LP    F  L+     +G  GL +G  +++    I 
Sbjct: 289 AGRTDLPVFVAFITLIIMSELLGGWGLIVGLPIVSFFLDIL 329


>gi|152982074|ref|YP_001351765.1| hypothetical protein mma_0075 [Janthinobacterium sp. Marseille]
 gi|151282151|gb|ABR90561.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 337

 Score = 45.6 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 43/338 (12%), Positives = 118/338 (34%), Gaps = 15/338 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M   + N   +    ++  + + L   +G  A + S L++      +      +      
Sbjct: 1   MSTPIKNSYVVTASYVLAAVALWLVMHQGLLAALFSGLLVYSLVQLLAPKMGRELVGHKG 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            +A +A +SV  L +  L  L +  +   +    ++ +  Q    +             +
Sbjct: 61  QVAAVALLSV--LIVAALTILIWGSITFFRSDAGRISVLLQKMADILEASRS----QIPA 114

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            + T      ++L+ +  ++L+++ ++      S  G I     + +I   +A  +    
Sbjct: 115 WIATYIPVDAEALRTMITSWLRSHALE-ARTMGSEAGRILAHILIGMIIGAMAGLY---- 169

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
             + + ++         A    +      ++ +      I A   G+ L     LAG+  
Sbjct: 170 -DTTTMRVYKPLAAAMHARVVALHNAFRNIVFAQVRIAAINAALTGIYLIVILPLAGIEL 228

Query: 241 HV--ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            +   + V+T  + ++P    +    + + + +  ++  A    ++  + +  ++  L  
Sbjct: 229 PLRKTMVVVTFFVGLLPVIGNLISNTILVIIGLSHSLHTALGSLVF-LMVIHKLEYFLNA 287

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            ++G  I          ++      G+ G+   PV  A
Sbjct: 288 KIIGQHIDARTWELLMAMLVMESIFGIPGVIAAPVFYA 325


>gi|203287479|ref|YP_002222494.1| hypothetical protein BRE_11 [Borrelia recurrentis A1]
 gi|201084699|gb|ACH94273.1| conserved hypothetical integral membrane protein [Borrelia
           recurrentis A1]
          Length = 363

 Score = 45.6 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 55/163 (33%), Gaps = 3/163 (1%)

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           ++ +  +    + + ++   +   I         ++   GL++     L G        V
Sbjct: 172 KVKNAFKRSVSSMFIEVLSTINNQISKYLGIKVFVSFLTGLLVFIGLKLFGQDFPRVWAV 231

Query: 247 ITAIMAMIPGGAPIS---FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           +T +   IP    I    F  ++  +    ++     +F++      ++   L P + G 
Sbjct: 232 LTFVFNFIPSIGSILAVFFIMIAALVQFYPDLNLVLYIFIYNTFVQMLIGNILEPKMQGH 291

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            + L        L       G++GL I      +I VI    +
Sbjct: 292 RLDLSPFLLLCFLFFWGWLWGIVGLLIAYPFTVIIKVIVDNIV 334


>gi|203283936|ref|YP_002221676.1| predicted permease [Borrelia duttonii Ly]
 gi|201083379|gb|ACH92970.1| predicted permease [Borrelia duttonii Ly]
          Length = 363

 Score = 45.6 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 55/163 (33%), Gaps = 3/163 (1%)

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           ++ +  +    + + ++   +   I         ++   GL++     L G        V
Sbjct: 172 KVKNAFKRSVSSMFIEVLSTINNQISKYLGIKVFVSFLTGLLVFIGLKLFGQDFPRVWAV 231

Query: 247 ITAIMAMIPGGAPIS---FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           +T +   IP    I    F  ++  +    ++     +F++      ++   L P + G 
Sbjct: 232 LTFVFNFIPSIGSILAVFFIMIAALVQFYPDLNLVLYIFIYNTFVQMLIGNILEPKMQGH 291

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            + L        L       G++GL I      +I VI    +
Sbjct: 292 RLDLSPFLLLCFLFFWGWLWGIVGLLIAYPFTVIIKVIVDNIV 334


>gi|225461993|ref|XP_002267547.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 657

 Score = 45.6 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 69/223 (30%), Gaps = 10/223 (4%)

Query: 143 TNGIDFIPRFASRF---GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
             G+ F+               ++          L++          +       +   Y
Sbjct: 439 GGGMKFMVSIGESIISGAAEVFNFVSQSAVFFWVLYYLITSESGGVTEQAMSLIPMPKLY 498

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGA 258
             +   ++   I    L    IA  +G +    + L  +       ++  I  ++P   +
Sbjct: 499 RDRCVAVLDNAISGVLLATAEIAFFQGCLTWLLFRLYSIHFLYMSTILAIISPLLPIFPS 558

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            ++    +I L+++     A  L +     +      ++  + G         T   ++G
Sbjct: 559 WVATIPATIQLVLESRYILAITLSVIHLALMEYGASEIQEDIPGYSA----YLTGLSIIG 614

Query: 319 GVRTM--GLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G+      L G  +GP++  ++  + +     + +  ++    
Sbjct: 615 GMTLFPSALEGAIMGPLITTVVIGLKELYTEFVLDGPKQGEEE 657


>gi|169829560|ref|YP_001699718.1| hypothetical protein Bsph_4124 [Lysinibacillus sphaericus C3-41]
 gi|168994048|gb|ACA41588.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 259

 Score = 45.6 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 66/203 (32%), Gaps = 2/203 (0%)

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
           D I  + +    + + + + +   ++A +F   +               +   W+     
Sbjct: 57  DSIIIYTADLFQLLMKHVIEVFIFLVAYYFALLETRKSRYWFFQYVPKKYRHEWQSHFAK 116

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAV 265
           + ++          +     L+L   + +      +    I A   ++P  G  +    +
Sbjct: 117 IMQLFHYFIFVEFQLFTITLLILCGGFMILQFEQAIIKAFIVAFADVLPFFGIGVFLVPM 176

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           SIY    GN F    + L       +  +     L    ++L    TFF     +   G 
Sbjct: 177 SIYFYFNGNTFLCVAILLLYLFVQ-LTRQLADSMLWSNTLQLRTFHTFFISAASILLFGF 235

Query: 326 LGLFIGPVLMALIAVIWKESIMA 348
            G+ + P+ + L   + + SI  
Sbjct: 236 YGILLSPIFLFLAVKLKENSIFE 258


>gi|216264452|ref|ZP_03436444.1| membrane protein [Borrelia burgdorferi 156a]
 gi|215980925|gb|EEC21732.1| membrane protein [Borrelia burgdorferi 156a]
 gi|312148215|gb|ADQ30874.1| membrane protein [Borrelia burgdorferi JD1]
          Length = 362

 Score = 45.6 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 46/320 (14%), Positives = 107/320 (33%), Gaps = 27/320 (8%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I+ I + +    +  F P+  ++++GF  +P+Y+     K                  
Sbjct: 23  IVIVLIFIGAFKIAEAVFKPLAISIVLGFLVYPVYTFLARFK------------------ 64

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             VP   + +     +      +     + + V   +  +P          K +      
Sbjct: 65  --VPKFLIVFIIFFLLFSFSYLIFSFVYYSVTVL--MKQLPYYQNQLAFIMKDVLSRY-- 118

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           K+ S      N   +I  F +R     + +  S++ + + L+F   +      +LD   +
Sbjct: 119 KVDSSVINDVNFSGYIYPFLTRAYNEIIGFTSSLVVVFLLLYFLLSEIHVFEMKLDKAFK 178

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                 +      +   I        +++   G+++     L G    +   V++ +   
Sbjct: 179 KPISTRFIGALDTINNQIGKYLGIKILVSCLTGILVFIGLTLFGQDFPLVWAVLSFVFNF 238

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCL--FLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           IP  G+ ++   + I  LI+        L  F++      ++   L P + G  + +   
Sbjct: 239 IPSIGSILAVFFIVITSLIQFYPNLNIVLYVFIYNTSIQMLIGNILEPKMQGKRLDISPF 298

Query: 311 PTFFGLVGGVRTMGLLGLFI 330
                L       G++GL I
Sbjct: 299 LLLCFLFFWGWLWGIVGLLI 318


>gi|190890934|ref|YP_001977476.1| putative transmembrane permease protein [Rhizobium etli CIAT 652]
 gi|190696213|gb|ACE90298.1| putative transmembrane permease protein [Rhizobium etli CIAT 652]
          Length = 349

 Score = 45.2 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 63/169 (37%), Gaps = 2/169 (1%)

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + +           ++   V +V+   F   ++I +G G+V+    + +G+ + V  G  
Sbjct: 178 IMTFRTRTQRLAAIRVINAVEQVLGFYFATASLIYVGLGVVMTIIAYASGLSAPVLWGFF 237

Query: 248 TAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
             + + IP  G   ++ +     ++                    I++  + P ++G  +
Sbjct: 238 AFLSSFIPYLGITLMTLSVAIAGIITYDGFIVGLMPAAAFFTVHLIMENIIFPAVMGRRL 297

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           ++     F  ++      G +G  +   L  ++  I +E ++  +   +
Sbjct: 298 EINPFIVFLAILFWTWMWGAVGAMLALPLSLIVMTIIEELLIEERPQPQ 346


>gi|218689547|ref|YP_002397759.1| hypothetical protein ECED1_1800 [Escherichia coli ED1a]
 gi|218427111|emb|CAR07993.2| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli ED1a]
          Length = 294

 Score = 45.2 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 33/284 (11%), Positives = 84/284 (29%), Gaps = 22/284 (7%)

Query: 48  YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
               +  +      ++++ T+ VM + ++ L +L        + L             + 
Sbjct: 1   MQHMVRWRVPRVLAVSILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQAIE 59

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
             L  +   +   +L      +     + +     +N +  I         + L+     
Sbjct: 60  PLLQRVGIDVSVDQLAHYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV---- 115

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
                           +  +   +     P       +     +    +  T I+I  G 
Sbjct: 116 --------------PQLPGKFQQMMAR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGQ 159

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           V  +      V      G++   +  IP  G+ ++       +L+    + A  +     
Sbjct: 160 VAWAMLAALDVRFAFVWGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYL 219

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +   +    L P ++G  + L  L  F  L+     +G +G+ +
Sbjct: 220 LINLVFGNILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLL 263


>gi|9758216|dbj|BAB08661.1| unnamed protein product [Arabidopsis thaliana]
          Length = 678

 Score = 45.2 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 55/176 (31%), Gaps = 5/176 (2%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           I          F ++   ++  I  L+           +       +  +   +   ++ 
Sbjct: 441 IGNLIISGAAEFFNFISQLMIFIWVLYILITSESGGVTEQVMNMLPINASARNRCVEVLD 500

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSI 267
             I    L    IA  +G +    + L  +       V+  I A++P      +    ++
Sbjct: 501 LAISGVLLATAEIAFFQGCLTWLLFRLYNIHFLYMSTVLAFISALLPIFPYWFATIPAAL 560

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
            L+++G    A  L +   + +      ++  + G         T   ++GGV   
Sbjct: 561 QLVLEGRYIVAVILSVTHLVLMEYGASEIQDDIPGSNA----YLTGLSIIGGVTLF 612


>gi|187917889|ref|YP_001883452.1| hypothetical membrane spanning protein [Borrelia hermsii DAH]
 gi|119860737|gb|AAX16532.1| hypothetical membrane spanning protein [Borrelia hermsii DAH]
          Length = 359

 Score = 45.2 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 68/200 (34%), Gaps = 3/200 (1%)

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           K+ S      +   +I  F +R     + +  S++ + + L+F   +    + ++ +   
Sbjct: 119 KLDSAIISNIDFSKYIYPFLTRISNEIIGFASSLVVLFLLLYFLLSEIHIFAIKVKNAFR 178

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
               + + +    +   I         ++   G ++     L G        V+T +   
Sbjct: 179 ASVSSMFIEALSTINNQISKYLGIKVFVSFLTGFLVFIGLKLFGQDFPRVWAVLTFVFNF 238

Query: 254 IPGGAPIS---FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           IP    I    F  ++  +    N+     +F++      ++   L P + G  + L   
Sbjct: 239 IPSIGSILAVFFIVIAALVQFYPNLDLVLYIFIYNTFVQMLIGNILEPKMQGHRLDLSPF 298

Query: 311 PTFFGLVGGVRTMGLLGLFI 330
                L       G++GL I
Sbjct: 299 LLLCFLFFWGWLWGIVGLLI 318


>gi|331698970|ref|YP_004335209.1| hypothetical protein Psed_5219 [Pseudonocardia dioxanivorans
           CB1190]
 gi|326953659|gb|AEA27356.1| protein of unknown function UPF0118 [Pseudonocardia dioxanivorans
           CB1190]
          Length = 389

 Score = 45.2 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 51/329 (15%), Positives = 99/329 (30%), Gaps = 35/329 (10%)

Query: 13  RWMIMFI-------ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           R +I+ +        +  L        PV  AL++     P+      +      +LA +
Sbjct: 22  RGLIVLLSVAAAVVTVAGLKAFSSILGPVFLALMLTVAVHPLMGRLRGR--GVPVWLATL 79

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T+      ++ L       +  +  L+          +     L               
Sbjct: 80  LTLLATFAVVIALAAALALSVARLATLLPSYQDRFAALLGDVDAL--------------- 124

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L+            L    +  I        +        ++F++  L F   D     
Sbjct: 125 -LASLGVGHEQVRAALSQIDLGTIAGLVGDVLVGLTGAFSDLVFILALLLFMGIDAARFG 183

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + + SL                 +  RS  +  T+  +   +    A W  G+P  +  G
Sbjct: 184 RGVRSLTGERPGIV--TALETFARGTRSYLVVTTVFGLIVAVADTIAVWALGIPLPLLWG 241

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           ++  I   IP  G  I     +I  L++G       + +   +  F++   ++P  VG  
Sbjct: 242 LLAFITNYIPNIGFIIGLAPPAILGLLEGGPKLMVIVIVVYCVINFVIQSVIQPKYVGDA 301

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
           + L    TF  LV         G  +GP+
Sbjct: 302 VDLSLTLTFLSLV-------FWGWVVGPL 323


>gi|307150365|ref|YP_003885749.1| hypothetical protein Cyan7822_0429 [Cyanothece sp. PCC 7822]
 gi|306980593|gb|ADN12474.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7822]
          Length = 349

 Score = 45.2 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 29/283 (10%), Positives = 83/283 (29%), Gaps = 9/283 (3%)

Query: 35  LSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVS 94
            +A++       +        +    +   +    ++ L  +  + +    + + K L+ 
Sbjct: 30  FTAIVFATALNRLIRWLEQH-QIKRNYAITLTFTGILILITLFFVLIIPPFLEQFKNLL- 87

Query: 95  KVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFAS 154
                 +    + + +  +   +  + L            ++ +         F  RF +
Sbjct: 88  ------ELSPQIWQQIRHLLITLRDANLGWLPQPPTTLSDLVKQLQPIFEDTQFWKRFFA 141

Query: 155 RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRST 214
            F   F      +  +I+       +     Q    L    +    ++I       + + 
Sbjct: 142 IFSNSFFAILQLLFILILIF-VMLLNPHPYRQGFLRLFPSFYRRRGEEILDKTELALVNW 200

Query: 215 FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGN 274
           F G+ I +   G+      +   +   +   ++  ++  IP   P +     I L +   
Sbjct: 201 FTGIVISSTFIGVFSAIGLFALHINLVLFNALLAGLLNFIPNIGPTTSVVFPIMLALLDA 260

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            +    + +   I   I    L P ++   + L    T    +
Sbjct: 261 PWKVGAVLILYFIIQNIESYLLTPTVMAKQVSLLPAVTLMAQL 303


>gi|195941746|ref|ZP_03087128.1| hypothetical protein Bbur8_02554 [Borrelia burgdorferi 80a]
 gi|218249870|ref|YP_002374540.1| membrane protein [Borrelia burgdorferi ZS7]
 gi|221217432|ref|ZP_03588903.1| membrane protein [Borrelia burgdorferi 72a]
 gi|223889192|ref|ZP_03623781.1| membrane protein [Borrelia burgdorferi 64b]
 gi|226322079|ref|ZP_03797604.1| membrane protein [Borrelia burgdorferi Bol26]
 gi|218165058|gb|ACK75119.1| membrane protein [Borrelia burgdorferi ZS7]
 gi|221192710|gb|EEE18926.1| membrane protein [Borrelia burgdorferi 72a]
 gi|223885441|gb|EEF56542.1| membrane protein [Borrelia burgdorferi 64b]
 gi|226232669|gb|EEH31423.1| membrane protein [Borrelia burgdorferi Bol26]
 gi|312149449|gb|ADQ29520.1| membrane protein [Borrelia burgdorferi N40]
          Length = 362

 Score = 45.2 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 46/320 (14%), Positives = 107/320 (33%), Gaps = 27/320 (8%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I+ I + +    +  F P+  ++++GF  +P+Y+     K                  
Sbjct: 23  IVIVLIFIGAFKIAEAVFKPLAISIVLGFLVYPVYTFLARFK------------------ 64

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             VP   + +     +      +     + + V   +  +P          K +      
Sbjct: 65  --VPKFLIVFIIFFLLFSFSYLIFSFVYYSVTVL--MKQLPYYQNQLAFIMKDVLSRY-- 118

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           K+ S      N   +I  F +R     + +  S++ + + L+F   +      +LD   +
Sbjct: 119 KVDSSVINDVNFSGYIYPFLTRAYNEIIGFTSSLVVVFLLLYFLLSEIHVFEMKLDKAFK 178

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                 +      +   I        +++   G+++     L G    +   V++ +   
Sbjct: 179 KPISTRFIGALDTINNQIGKYLGIKILVSCLTGILVFIGLTLFGQDFPLVWAVLSFVFNF 238

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCL--FLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           IP  G+ ++   + I  LI+        L  F++      ++   L P + G  + +   
Sbjct: 239 IPSIGSILAVFFIVITSLIQFYPNLNIVLYVFIYNTSIQMLIGNILEPKMQGKRLDISPF 298

Query: 311 PTFFGLVGGVRTMGLLGLFI 330
                L       G++GL I
Sbjct: 299 LLLCFLFFWGWLWGIVGLLI 318


>gi|113955470|ref|YP_730789.1| hypothetical protein sync_1584 [Synechococcus sp. CC9311]
 gi|113882821|gb|ABI47779.1| Uncharacterized conserved membrane protein [Synechococcus sp.
           CC9311]
          Length = 359

 Score = 45.2 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/314 (10%), Positives = 98/314 (31%), Gaps = 11/314 (3%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI- 75
           +    +  + L+     + +A+++      +  +   +             V +  L + 
Sbjct: 12  LLATGLLFWSLREVLIHLFAAIVLAMALCTLVGALRQRWNLPRPLA---LLVCIAGLVVM 68

Query: 76  --VPLLFLFYYGMLEMKELVSKVVLANQHGIPVP----RWLSDIPGGMWASELWTKHLSH 129
             + L  +      + ++L+ ++  A +    +       +S +  G  +S  W++ L  
Sbjct: 69  VSIGLTVIVPPFTSQFQQLILQLPSAAKALKDLLLQFFSSVSSMVYGSESSSNWSQLL-F 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
           P+ L   S      + +                  L ++ +            +      
Sbjct: 128 PKGLANSSGGPAIASSLTGGLLGLLGLAGNVGSGLLQLLIVFAVTLMVAVQPHAYKNVGI 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +    +    + I  +  + + +  +G+ I ++   ++ G    L GV   +A  ++  
Sbjct: 188 QMLPSFYRRRARVILNMCGEALSNWMIGVLISSVCVAVLAGIGLSLMGVKLVMANALLAG 247

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++ +IP   P   T   + + +    + A  +         +    + P ++   + L  
Sbjct: 248 LLNVIPNVGPTLSTVFPMSVALLDAPWKALAVLGLYIFIQNLESYVITPSVMQRQVNLLP 307

Query: 310 LPTFFGLVGGVRTM 323
             T    +      
Sbjct: 308 GLTLAAQLVFTVLF 321


>gi|255030244|ref|ZP_05302195.1| hypothetical protein LmonL_16246 [Listeria monocytogenes LO28]
          Length = 279

 Score = 45.2 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/287 (11%), Positives = 82/287 (28%), Gaps = 25/287 (8%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  + + R  +  +I   LY L+     +L   I  +    + +  + +       + ++
Sbjct: 8   LQNRSVRRVGVFILIAFVLYLLRSQMNIILLTFIFSYLITRLENFILRRISIYRQIIVLL 67

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V +  + I   +        ++ +LV                                
Sbjct: 68  LYVLIAAVIIFVFVKYIPVLADQINQLVKFGNTFLTT---------------------DS 106

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +      +  L+  F      +        +        +++   ++   FF      + 
Sbjct: 107 NNDFINYIVSLANQFDIMKYTEQGVSMILTYLTNVGTVLMNVFIALMLSLFFSLGKEHLV 166

Query: 186 QQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              +          +++                    IIA+   ++   A W+ G P  +
Sbjct: 167 SFTNQFSTSKIGFIYEEVKFFGSKFVATFGKVIEAQFIIALVNAILTTIALWILGFPQLM 226

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
            L ++  ++ +IP  G  IS   ++I     G +     + +   I 
Sbjct: 227 TLSIMVFLLGLIPVAGVIISLVPLTIIGYSIGGVEYIFYILVVVIII 273


>gi|320658774|gb|EFX26448.1| pheromone autoinducer 2 transporter [Escherichia coli O55:H7 str.
           USDA 5905]
          Length = 276

 Score = 45.2 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 48/135 (35%), Gaps = 1/135 (0%)

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
           P       +     +    +  T I+I  GLV  +      V      G++   +  IP 
Sbjct: 111 PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLAFALNYIPN 170

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ ++       +L+    + A  +     +   +    L P ++G  + L  L  F  
Sbjct: 171 IGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGLSTLVVFLS 230

Query: 316 LVGGVRTMGLLGLFI 330
           L+     +G +G+ +
Sbjct: 231 LIFWGWLLGPVGMLL 245


>gi|225552033|ref|ZP_03772973.1| membrane protein [Borrelia sp. SV1]
 gi|225371031|gb|EEH00461.1| membrane protein [Borrelia sp. SV1]
          Length = 362

 Score = 44.8 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 46/320 (14%), Positives = 107/320 (33%), Gaps = 27/320 (8%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I+ I + +    +  F P+  ++++GF  +P+Y+     K                  
Sbjct: 23  IVIVLIFIGAFKIAEAVFKPLAISIVLGFLVYPVYTFLARFK------------------ 64

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             VP   + +     +      +     + + V   +  +P          K +      
Sbjct: 65  --VPKFLIVFIIFFLLFSFSYLIFSFVYYSVTVL--MKQLPYYQNQLAFIMKDVLSRY-- 118

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           K+ S      N   +I  F +R     + +  S++ + + L+F   +      +LD   +
Sbjct: 119 KVDSSVINDVNFSGYIYPFLTRAYNEIIGFTSSLVVVFLLLYFLLSEIHVFEMKLDKAFK 178

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                 +      +   I        +++   G+++     L G    +   V++ +   
Sbjct: 179 KPISTRFIGALDTINNQIGKYLGIKILVSCLTGILVFIGLTLFGQDFPLVWAVLSFVFNF 238

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCL--FLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           IP  G+ ++   + I  LI+        L  F++      ++   L P + G  + +   
Sbjct: 239 IPSIGSILAVFFIVITSLIQFYPNLNIVLYVFIYNTSIQMLIGNILEPKMQGKRLDISPF 298

Query: 311 PTFFGLVGGVRTMGLLGLFI 330
                L       G++GL I
Sbjct: 299 LLLCFLFFWGWLWGIVGLLI 318


>gi|315291913|gb|EFU51265.1| putative AI-2 transport protein TqsA [Escherichia coli MS 153-1]
          Length = 276

 Score = 44.8 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 48/135 (35%), Gaps = 1/135 (0%)

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
           P       +     +    +  T I+I  GLV  +      V      G++   +  IP 
Sbjct: 111 PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLAFALNYIPN 170

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ ++       +L+    + A  +     +   +    L P ++G  + L  L  F  
Sbjct: 171 IGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGLSTLVVFLS 230

Query: 316 LVGGVRTMGLLGLFI 330
           L+     +G +G+ +
Sbjct: 231 LIFWGWLLGPVGMLL 245


>gi|148270688|ref|YP_001245148.1| hypothetical protein Tpet_1566 [Thermotoga petrophila RKU-1]
 gi|281412994|ref|YP_003347073.1| protein of unknown function UPF0118 [Thermotoga naphthophila
           RKU-10]
 gi|147736232|gb|ABQ47572.1| protein of unknown function UPF0118 [Thermotoga petrophila RKU-1]
 gi|281374097|gb|ADA67659.1| protein of unknown function UPF0118 [Thermotoga naphthophila
           RKU-10]
          Length = 321

 Score = 44.8 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 23/186 (12%), Positives = 62/186 (33%), Gaps = 1/186 (0%)

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
            ++   +I+   F       + ++         P+  K+  +           G  ++AI
Sbjct: 135 FITAAILIVITAFIVSSLKRLIKENVHYLFPTNPSDGKEFLKTTYTEFERFVGGQVLVAI 194

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
             GL +G   ++  +PS   LG++  +   +P    +      + L    +  +   +  
Sbjct: 195 FVGLFVGFGAFIFKIPSAFFLGMLAFVTDFVPYLGVVISAIPLLMLAFSVHGLSGLLIGT 254

Query: 284 WGAIELFIVDK-TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              +    ++   L P +    + + +      ++         G+ I    +  +   W
Sbjct: 255 IILVAANQLEMWVLAPKIQSNTLNVHWFIILITILILGDLFSFGGVLIALPFLIFLKNFW 314

Query: 343 KESIMA 348
           K+ +M 
Sbjct: 315 KQYVMG 320


>gi|170289412|ref|YP_001739650.1| hypothetical protein TRQ2_1632 [Thermotoga sp. RQ2]
 gi|170176915|gb|ACB09967.1| protein of unknown function UPF0118 [Thermotoga sp. RQ2]
          Length = 321

 Score = 44.8 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 23/186 (12%), Positives = 62/186 (33%), Gaps = 1/186 (0%)

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
            ++   +I+   F       + ++         P+  K+  +           G  ++AI
Sbjct: 135 FITAAILIVITAFIVSSLKRLIKENVHYLFPTNPSDGKEFLKTTYTEFERFVGGQVLVAI 194

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
             GL +G   ++  +PS   LG++  +   +P    +      + L    +  +   +  
Sbjct: 195 FVGLFVGFGAFIFKIPSAFFLGMLAFVTDFVPYLGVVISAIPLLMLAFSVHGLSGLLIGT 254

Query: 284 WGAIELFIVDK-TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              +    ++   L P +    + + +      ++         G+ I    +  +   W
Sbjct: 255 IILVAANQLEMWVLAPKIQSNTLNVHWFIILITILILGDLFSFGGVLIALPFLIFLKNFW 314

Query: 343 KESIMA 348
           K+ +M 
Sbjct: 315 KQYVMG 320


>gi|290889818|ref|ZP_06552905.1| hypothetical protein AWRIB429_0295 [Oenococcus oeni AWRIB429]
 gi|290480428|gb|EFD89065.1| hypothetical protein AWRIB429_0295 [Oenococcus oeni AWRIB429]
          Length = 347

 Score = 44.8 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 46/341 (13%), Positives = 117/341 (34%), Gaps = 23/341 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  +    ++ +  +++ +Y L+ F   +L   I  + +      F  + +       ++
Sbjct: 8   LKRKDAQLYLTLIFLIIVIYTLRNFIGVILLTTIFSYLAIKASLFFKKQFKVPYLLAVIL 67

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V  + LFI  + +     + ++K + + +  A      + + +  +            
Sbjct: 68  MYVFGLGLFISAITYAAPLLVEQLKVIPNMISKAIVDHPYLNKNIDKL------------ 115

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                   + +  + + +N  + +       G +   +   ++  I   F +      + 
Sbjct: 116 ------INQAIHSSEIVSNSKNVLITGLREVGHVGTGFT-HVVLAIFLSFVYSISHNRLL 168

Query: 186 QQLDSLGEHLFPAYWKKI---SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           +      +  +  ++K I   +R    ++        +I     L++     L  +PS +
Sbjct: 169 KFGHEFLKSPYREFFKNIYYLARKFVLILGKIIETQLLICSINTLLMAIGLSLLKMPSLL 228

Query: 243 ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L +I  I  ++P  G  IS   + +     G +     + +   +        L P L+
Sbjct: 229 LLTIIIFIFGLVPVAGVLISIIPLGLIAFASGGLIRVAEVTVLVVVIHLFESYFLHPRLM 288

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            G   LP    F  L+     +G  GL +G  +++    I 
Sbjct: 289 AGRTDLPVFVAFITLIIMSELLGGWGLIVGLPIVSFFLDIL 329


>gi|213609352|ref|ZP_03369178.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 193

 Score = 44.8 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 60/164 (36%), Gaps = 3/164 (1%)

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
             +++ + F   +   + ++L  +     P       +     +    +  T I+I  GL
Sbjct: 1   FLLLLTVVFMLLEVPQLPEKLQQMMSR--PVEGMAAIQRALDSVSHYLVLKTAISIVTGL 58

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           V         V      G++   +  IP  G+ ++     I +L+    ++A  +     
Sbjct: 59  VAWGMLAALDVRFAFVWGLLAFALNYIPNIGSVLAALPPIIQVLVFNGFYDALLVLAGYL 118

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +   +    L P ++G  + L  L  F  L+     +G +G+ +
Sbjct: 119 LINLVFGNILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLL 162


>gi|27357090|gb|AAN86544.1| putative permease protein [Eubacterium acidaminophilum]
          Length = 248

 Score = 44.8 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 4/169 (2%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           I  V+ ++   +  P + A II  +  P+      +   S+   ++IA+V V  LF   +
Sbjct: 45  IAFVAFFWTAAYTFPFIIAFIIALSIQPLVKLLKERIGISNGITSLIASVLVYILFFTLI 104

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIP--VPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             L Y  + E K+++S +   + + +   V  W+S     +   +    + +  Q     
Sbjct: 105 FLLSYKMVSEAKQMLSTLTTIDINYVTQLVKEWISRFDIYLKYIDPDFINKNSSQDHGYS 164

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            E  L+ +    + +F S  G I L   + I   II+ +FF RD   I 
Sbjct: 165 KERPLECSEGS-LNKFLSAAGSIPLWIAV-IFITIISTYFFTRDMDKIK 211


>gi|296448712|ref|ZP_06890572.1| protein of unknown function UPF0118 [Methylosinus trichosporium
           OB3b]
 gi|296253781|gb|EFH00948.1| protein of unknown function UPF0118 [Methylosinus trichosporium
           OB3b]
          Length = 340

 Score = 44.8 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 49/337 (14%), Positives = 118/337 (35%), Gaps = 23/337 (6%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
                   +++F+ LV+ +  +    P++ A+ I    +P+ ++   +      + A+  
Sbjct: 4   TANTAGAALLIFLTLVAAHVGQTVVEPIVFAIFIIALIFPLETTLERRL---PRWAALAL 60

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           TV+     IV L  L  +G  E+ +  ++              L  +     AS  W + 
Sbjct: 61  TVTAALAVIVTLSSLMVWGGGELVDWFARN-------------LDRVRASFEASTKWLE- 106

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            +H   +  L         +  + R A+    +   + L +   ++       +  ++ +
Sbjct: 107 -THDIFVGALITEHANAAWMLGVIRAAATRINVLAGFALVVFIYVVMG---LAETSTLRK 162

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            + +             +  + K  R   L  T  ++  G ++       G+    A GV
Sbjct: 163 NIAAATNDETAQRLLSAAAHIAKKFRRYMLVRTAASLATGALVFLFALAIGLEGAAAWGV 222

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLVGGP 304
           ++  +  +P  G+ +     +++  ++ +   A  L L     +  ++   L P   G  
Sbjct: 223 LSFALNYLPYIGSLVVTVLPALFAYVQFDSAQAALLVLGALCVIQLVIGSGLEPVFSGTA 282

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           + +      F ++      GL G FIG  +      +
Sbjct: 283 LAMSPTVVVFAVLLWTFLWGLPGAFIGVPIAIAALTM 319


>gi|332090344|gb|EGI95442.1| hypothetical protein SB359474_3963 [Shigella boydii 3594-74]
          Length = 278

 Score = 44.4 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 99/285 (34%), Gaps = 22/285 (7%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +    + ++  V +
Sbjct: 14  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRPVTITIVVVVML 73

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +      L  L         E +S +   N+               +       + +   
Sbjct: 74  IA-----LTALVGVLAASFNEFISMLPKFNKE--------------LTRKLFKLQEMLPF 114

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + +  F +   +       S++ +++ + F   +   +  ++  
Sbjct: 115 LNLHMSPERMLQRMDSEKVVTFTTALMIGLSGAMASVLLLVMTVVFMLFEVRHVPYKM-R 173

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+  +
Sbjct: 174 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGVIVWLGLALMGVQFALMWAVLAFL 232

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           +  +P  GA IS     I +L+   ++    +     +   ++D 
Sbjct: 233 LNYVPNIGAVISAVPPMIQVLLFNGVYACILVGALFLVVHMVIDH 277


>gi|295396956|ref|ZP_06807078.1| possible permease [Aerococcus viridans ATCC 11563]
 gi|294974809|gb|EFG50514.1| possible permease [Aerococcus viridans ATCC 11563]
          Length = 163

 Score = 44.4 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 65/154 (42%), Gaps = 2/154 (1%)

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-G 257
           +WK++     + I+        + +   ++ G  +W+  +     + +  +++A++P  G
Sbjct: 6   FWKQVFLHTIQNIKLYVGAEAKLLLLTVIIYGVGFWVLDIHLAWLMAIGISLVALLPVIG 65

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
           A + F    +   ++G+      LF        + +  L+P L+G  +KLPF       +
Sbjct: 66  AGVVFIPWILIEWLQGDTQVGWWLFAIYLGVELLTE-ILQPLLIGKDLKLPFWLPIVVTL 124

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
                  L G+ +  +++ LI+  ++   +   E
Sbjct: 125 MCTVAFNLFGVMVAGIVIPLISAYFQVKEIERAE 158


>gi|124002111|ref|ZP_01686965.1| conserved putative permease protein [Microscilla marina ATCC 23134]
 gi|123992577|gb|EAY31922.1| conserved putative permease protein [Microscilla marina ATCC 23134]
          Length = 396

 Score = 44.4 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 84/236 (35%), Gaps = 22/236 (9%)

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           Q+L    E       +++I  FA         +   +    I  FF Y  G      L +
Sbjct: 136 QNLLNFVEGINVGAILNYILGFAGTL------FLYILAVSFITFFFLYEKGLIRHTLLAA 189

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP--SHVALGVIT 248
           +  H F      I + + + + S  +G+ I  I    ++     +AGV     + +    
Sbjct: 190 IPNHYFEVVVTTIYK-IERRLTSYLVGLLIQIIVIFTIISVGLTIAGVAGRYALLIAAAA 248

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF-----LWGAIELFIV-------DK-T 295
           A+  +IP   P      +++++I     N+          W  ++ F V       D   
Sbjct: 249 ALFNLIPYFGPTLGFIFALFVIISTTTLNSVFEVTSNEYAWITLKTFTVFASAQLTDNIF 308

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+PF+    +K   L  F  +  G    G LG+     +  ++ V + E  +   +
Sbjct: 309 LQPFIFSKSVKAHPLEIFIAIFAGAALSGGLGMIAAIPVYTILRVSFIELRLGYTQ 364


>gi|260435867|ref|ZP_05789837.1| hypothetical protein SH8109_1721 [Synechococcus sp. WH 8109]
 gi|260413741|gb|EEX07037.1| hypothetical protein SH8109_1721 [Synechococcus sp. WH 8109]
          Length = 359

 Score = 44.4 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 60/159 (37%)

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L    +    ++I       + S  +G+ I ++   ++   A  L GV   +A  ++ 
Sbjct: 187 LQLIPSFYRRRGRRILDQCGAALSSWMVGVLISSLAVFVLCSIALTLLGVKLVLANALLA 246

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++ +IP   P   T   + + +    + A  +     +   I    + P ++   +KL 
Sbjct: 247 GLLNVIPNVGPTMSTIFPMAVALLDAPWKAAAVLGAYVVIQNIESYVITPSVMHHQVKLL 306

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              T           G LGL +   L  ++ VI +E ++
Sbjct: 307 PGLTLAAQFLFTLLFGPLGLLMALPLAVVLQVIIREVVI 345


>gi|226321165|ref|ZP_03796706.1| membrane protein [Borrelia burgdorferi 29805]
 gi|226233457|gb|EEH32197.1| membrane protein [Borrelia burgdorferi 29805]
          Length = 349

 Score = 44.4 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 46/320 (14%), Positives = 107/320 (33%), Gaps = 27/320 (8%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I+ I + +    +  F P+  ++++GF  +P+Y+     K                  
Sbjct: 10  IVIVLIFIGAFKIAEAVFKPLAISIVLGFLVYPVYTFLARFK------------------ 51

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             VP   + +     +      +     + + V   +  +P          K +      
Sbjct: 52  --VPKFLIVFIIFFLLFSFSYLIFSFVYYSVTVL--MKQLPYYQNQLAFIMKDVLSRY-- 105

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           K+ S      N   +I  F +R     + +  S++ + + L+F   +      +LD   +
Sbjct: 106 KVDSSVINDVNFSGYIYPFLTRAYNEIIGFTSSLVVVFLLLYFLLSEIHVFEMKLDKAFK 165

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                 +      +   I        +++   G+++     L G    +   V++ +   
Sbjct: 166 KPISTRFIGALDTINNQIGKYLGIKILVSCLTGILVFIGLTLFGQDFPLVWAVLSFVFNF 225

Query: 254 IP-GGAPISFTAVSIYLLIKGNIFNATCL--FLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           IP  G+ ++   + I  LI+        L  F++      ++   L P + G  + +   
Sbjct: 226 IPSIGSILAVFFIVITSLIQFYPNLNIVLYVFIYNTSIQMLIGNILEPKMQGKRLDISPF 285

Query: 311 PTFFGLVGGVRTMGLLGLFI 330
                L       G++GL I
Sbjct: 286 LLLCFLFFWGWLWGIVGLLI 305


>gi|297516617|ref|ZP_06935003.1| putative transport protein [Escherichia coli OP50]
          Length = 286

 Score = 44.4 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 48/135 (35%), Gaps = 1/135 (0%)

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP- 255
           P       +     +    +  T I+I  GLV  +      V      G++   +  IP 
Sbjct: 121 PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLAFALNYIPN 180

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G+ ++       +L+    + A  +     +   +    L P ++G  + L  L  F  
Sbjct: 181 IGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGLSTLVVFLS 240

Query: 316 LVGGVRTMGLLGLFI 330
           L+     +G +G+ +
Sbjct: 241 LIFWGWLLGPVGMLL 255


>gi|218259436|ref|ZP_03475168.1| hypothetical protein PRABACTJOHN_00826 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225090|gb|EEC97740.1| hypothetical protein PRABACTJOHN_00826 [Parabacteroides johnsonii
           DSM 18315]
          Length = 237

 Score = 44.4 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 64/197 (32%), Gaps = 13/197 (6%)

Query: 10  GIMRWMIMFIILVS----LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            + R +    ++      +  L+    P L A ++ +   P    F  K +  S  L+++
Sbjct: 13  RVARILFGLAVISGVIYLIAVLRNALLPFLIAWLLAYMMQPFVKFFQYKVKLKSRLLSIL 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           A +    L I  +  +       +  +  +V    +      R    IP    +   + +
Sbjct: 73  AVLVSTLLVISLVGVVI------VPSVTQEVNRTLELMQEHNRGYGHIPMIPQSWAEYLE 126

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD--YCLSIIFMIIALFFFYRDG-F 182
               P  L  L         +  I               + ++I+F+I   F  Y  G  
Sbjct: 127 KNIDPDQLAQLLSKENIEKAVKQIAPKMWIVLTNTFSILFSITIVFVIFLYFILYPAGLR 186

Query: 183 SISQQLDSLGEHLFPAY 199
           +  Q+LD       P++
Sbjct: 187 TDCQRLDPPDPRTLPSF 203


>gi|301105477|ref|XP_002901822.1| transmembrane protein, putative [Phytophthora infestans T30-4]
 gi|262099160|gb|EEY57212.1| transmembrane protein, putative [Phytophthora infestans T30-4]
          Length = 468

 Score = 44.4 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 46/364 (12%), Positives = 106/364 (29%), Gaps = 64/364 (17%)

Query: 14  WMIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPI-----------------YSSFIS 53
            ++   +    Y L  F     P   A+ + +   P+                 +     
Sbjct: 91  ALLATGLAAMFYLLAWFQAVLIPFFLAIFLMYLVDPLVEVIDVSPRYFLCICTSHGRHAR 150

Query: 54  KK-EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD 112
           +     S   A +  VS++C+F   L ++     +   +  +     N     V   L  
Sbjct: 151 RTSRGCSRAFASLVAVSLVCVFFGLLGYITV-LSVHALDASAYQTGYNNLVSGVEHILDQ 209

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC-LSIIFMI 171
           I                           + T   D + + A       +D   +  + +I
Sbjct: 210 I----------------------GLPVNITTTLHDNVDKVARIVVTETMDLLSVMFVTLI 247

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
              +F                     +    +   +   I+        +++   L++  
Sbjct: 248 YLTYFL--------------CTRTRASDAGGVWSKIDHDIQRFVTLKCFLSLFVALLVTI 293

Query: 232 AYWLAGVPSHVALGVITAIMAMIP-GGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIEL 289
            Y    V   +  G++T I+  IP  GA I+    + I  +   ++ N    FL   + +
Sbjct: 294 VYVSLNVGLAIVWGILTFILNWIPNVGAMIASVAPICIIAITPSDLMNPMEKFLAMFLPM 353

Query: 290 ---FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
                    + P + G  +++  +     L       G++G+ +   L A   ++     
Sbjct: 354 CFHMFAGNFVEPKVFGRKLEIDPVIVILSLSAWGLLWGVVGMMLSVPLTAAAKIMLSHLK 413

Query: 347 MAIK 350
           +  +
Sbjct: 414 LWPE 417


>gi|325189082|emb|CCA23609.1| transmembrane protein putative [Albugo laibachii Nc14]
          Length = 433

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 73/215 (33%), Gaps = 18/215 (8%)

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           + T   D + R A  F    +D    +   II L +F                    +  
Sbjct: 207 ITTTLHDNVERLARIFLTETMDILSFVFVTIIYLTYFL-------------CTRTRASDA 253

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             +   + + I+        +++   L++   Y    V   +  G++T I+  IP    +
Sbjct: 254 GGVWSKIDRDIQRFVTLKCFLSLFVALLVTVVYVWLNVGLAILWGILTFILNWIPNVGAM 313

Query: 261 S--FTAVSIYLLIKGNIFNATCLFLWGAIELFI---VDKTLRPFLVGGPIKLPFLPTFFG 315
                 V I ++   ++ N    FL   + + +   V   + P + G  +++  +     
Sbjct: 314 VASLIPVLIIVITPSSVMNTMEKFLAVLLPMCLHAFVGNFIEPRVFGKKLEMDPVIVILS 373

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L       G++G+ +   L A   ++     +  +
Sbjct: 374 LSTWGLLWGVVGMILSVPLTAAFKIMLSHLKLWPE 408


>gi|158426039|ref|YP_001527331.1| hypothetical protein AZC_4415 [Azorhizobium caulinodans ORS 571]
 gi|158332928|dbj|BAF90413.1| protein of unknown function [Azorhizobium caulinodans ORS 571]
          Length = 349

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 110/334 (32%), Gaps = 27/334 (8%)

Query: 9   QGIMRWMIMFIILVSLYFLKG-FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           Q I+  +I  ++L +   L     APV+ A+ +    WP+      +       L  +  
Sbjct: 15  QKILIGLIATVVLAAAVSLAQVILAPVVFAIFVIAVVWPVQRRLEQRIGTGLASLLTLLL 74

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
              +   IV ++   +  + +     +              WL     G   +     H 
Sbjct: 75  TLAVIGSIVSMVVWGFSHVAQWT--FANAGRFQAIYAQAGDWLEG--HGFLLAGSVADHF 130

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +                 + ++ R               ++   + + F   +     +Q
Sbjct: 131 N-----------------VRWLLRALQEISARANSLASFLVVTAVFVVFGLLEADIFVRQ 173

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  L  +   A+       +   +++     T+++I  G+++      +G+    A GVI
Sbjct: 174 VARLPRY--GAFLMASGADIASKMQTYMWVRTLMSIATGILVWGFTLASGMELATAWGVI 231

Query: 248 TAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
              +  IP   P +         L+   +   A  +F+   +  F+    L P + G  +
Sbjct: 232 ALALNYIPVIGPFTATLLPTVFALVQFESWRMALFVFVVLNVVQFVSGSYLEPRIAGRTL 291

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALI 338
            +      F +       GL G FIG P+++A +
Sbjct: 292 AISPFLVLFAVFFWSFLWGLAGAFIGVPLVIAAL 325


>gi|292654200|ref|YP_003534097.1| hypothetical protein HVO_0023 [Haloferax volcanii DS2]
 gi|291371158|gb|ADE03385.1| conserved hypothetical protein [Haloferax volcanii DS2]
          Length = 296

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 15/121 (12%), Positives = 38/121 (31%)

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
             G+  +               + +      +F     G ++ + L +L    +      
Sbjct: 117 AVGLGLLRSVGRTAATAAPVVLIKLTLFGFLVFALLLSGDAVGRTLPALVPADYRGAATA 176

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           ++    + + + ++     A+G   +    +W  G    V L  + A++  IP   P   
Sbjct: 177 LNERARETLFAIYVLQAATAVGTFAIGLVVFWALGYDYVVTLATVAAVLQFIPIVGPSVL 236

Query: 263 T 263
            
Sbjct: 237 L 237


>gi|255524567|ref|ZP_05391521.1| permease [Clostridium carboxidivorans P7]
 gi|255511720|gb|EET88006.1| permease [Clostridium carboxidivorans P7]
          Length = 146

 Score = 44.1 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 56/135 (41%)

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           + K + +   G  ++A+   +++   Y + G+P+ +   + T I+  IP         + 
Sbjct: 1   MDKALNAYVTGQLMVALSLAIMIYIGYKIIGMPNALIWALFTFILGFIPFIGFFISMIIP 60

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
             + +   I+    L +       +  + + P ++   +K+  L   F +V  V   G +
Sbjct: 61  SIIAVSKGIYMIIKLSIVFITVQTLKGRVVVPLIMSSTLKIHPLTDIFLVVTAVSYGGPM 120

Query: 327 GLFIGPVLMALIAVI 341
             FI   L A++ VI
Sbjct: 121 AAFIIVPLYAMVKVI 135


>gi|251798314|ref|YP_003013045.1| permease [Paenibacillus sp. JDR-2]
 gi|247545940|gb|ACT02959.1| permease-like protein [Paenibacillus sp. JDR-2]
          Length = 361

 Score = 44.1 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 80/246 (32%), Gaps = 16/246 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +  + +++++ +  +L     P+  A +I     P+     +K     +  + I+ +  
Sbjct: 16  ALIALTVYLVMFAFSYLYKIATPIFFAFVIYLCIEPLAKRL-NKIGIKKSIASGISVLVF 74

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             + I     L Y    +  + +       +  +P  + L        +S    K  + P
Sbjct: 75  SLIIIGLFSGLAYIITSQGADFI-------KVKLPQYQELFKEQVQDDSSVFQQKLQALP 127

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLD-------YCLSIIFMIIALFFFYRDGFS 183
                    ++     +++P+ A+      +        +  + +  II  +F   +   
Sbjct: 128 PEWVERITEYI-NGATEYLPKLANIIFTGLIGYISSFSTFLFNFVIGIILAYFLSIEIKI 186

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
             +  +    + F   +  +   V K I +       +     LV+ +A  +  V +  A
Sbjct: 187 WKKTANDKTPNTFKKAFFFLRENVFKGIGAYVKAQAKMMSITFLVIFAALLILRVENAFA 246

Query: 244 LGVITA 249
           +     
Sbjct: 247 ISFTAG 252


>gi|325958841|ref|YP_004290307.1| hypothetical protein Metbo_1090 [Methanobacterium sp. AL-21]
 gi|325330273|gb|ADZ09335.1| protein of unknown function UPF0118 [Methanobacterium sp. AL-21]
          Length = 330

 Score = 44.1 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 44/132 (33%), Gaps = 1/132 (0%)

Query: 215 FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKG 273
           FL    + +   L     +    +   +  G++T  +  IP  G  I+     +    K 
Sbjct: 178 FLIRVKVNLFAALGFIGIFLAFDINFALLWGILTFFLGFIPYLGIMIAAIPPILATWAKY 237

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
            I  A  + +   I   I +  + P   G  +++     F  L      +G  G  +   
Sbjct: 238 GIQGAILITILFIIVNTIAESIIFPRQTGKGLQMSIYVVFVSLFVWGWILGPSGFLLAIP 297

Query: 334 LMALIAVIWKES 345
           L  ++    ++ 
Sbjct: 298 LTIIVIKYLEKY 309


>gi|255067966|ref|ZP_05319821.1| putative membrane protein [Neisseria sicca ATCC 29256]
 gi|255047743|gb|EET43207.1| putative membrane protein [Neisseria sicca ATCC 29256]
          Length = 352

 Score = 44.1 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 50/340 (14%), Positives = 106/340 (31%), Gaps = 29/340 (8%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTS----WPIYSSFISKKEESS------------T 60
           + + L  L  L   F P+L A+I+ +        +      +    +             
Sbjct: 14  ILMGLALLAVLYFHFLPLLLAVILTYVFITKTNGLILWLRRRTLTRNTFLHKSLNAHNIN 73

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            ++   T+ ++   I+ +    Y  +      V    LA          L D        
Sbjct: 74  LISTTLTIGIVLTVILLMSLGIYQLIHGGHIPVMLTKLA--------AILEDTKNSSSLP 125

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +     L +  +        L       + R +      F+   + II   +  F    +
Sbjct: 126 QSVLNMLPNNTAEIKAYAVKLIEEYSAALTRISKNSFTSFVYILIGIIIGAMLSFHRL-N 184

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV-- 238
                +++      L             +V  +      I     G+ L     L GV  
Sbjct: 185 MRKNRRKMPPFKAELV-RRIVNFETSFERVFLAQVKISLIDTALTGVYLYLILPLFGVEL 243

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + VI  I+ +IP    +    + I L +  +++ A    ++  + +  ++  L  
Sbjct: 244 PFKITVLVIAFIVGLIPVAGNLISNTIIIILSLGASLYVAVASLVF-LVVIHKLEYFLNA 302

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
            ++G  I+         +V   R  G+ G+ + PV  A +
Sbjct: 303 KIIGSEIESSAWELLVAMVVFERIFGVGGIIVAPVYYAYL 342


>gi|297788190|ref|XP_002862244.1| hypothetical protein ARALYDRAFT_921013 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297307548|gb|EFH38502.1| hypothetical protein ARALYDRAFT_921013 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 608

 Score = 43.7 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 55/176 (31%), Gaps = 5/176 (2%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           I          F ++   ++  I  L+           +       +  +   +   ++ 
Sbjct: 426 IGNLIISGAAEFFNFISQLMVFIWVLYILITSESGGVTEQVMNMLPINASARNRCVEVLD 485

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSI 267
             I    L    IA  +G +    + L  +       V+  I A++P      +    ++
Sbjct: 486 LAISGVLLATAEIAFFQGCLTWLLFRLYNIHFLYMSTVLAFISALLPIFPYWFATIPAAL 545

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
            L+++G    A  L +   + +      ++  + G         T   ++GGV   
Sbjct: 546 QLVLEGRYIIAVTLSVTHLVLMEYGASEIQDDIPGSNA----YITGLSIIGGVTLF 597


>gi|168060621|ref|XP_001782293.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666223|gb|EDQ52883.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 623

 Score = 43.7 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 23/190 (12%), Positives = 59/190 (31%), Gaps = 7/190 (3%)

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
           +   +  +++    I     L++                  L  +   + + ++   + S
Sbjct: 420 ASGAVGLINFITETIIFFSVLYYLITSESGGVMNQVLNMVPLSDSVRSRCADVLDHAVSS 479

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSIYLLIK 272
            FL     AI +       +    +        +     +IP     ++       L ++
Sbjct: 480 VFLATMKAAIFQATFTWLLFTWFRIHFLYMATFLAMSQPVIPLFPNWLASIPGGAQLALE 539

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL--GLFI 330
           G    A  L +   + ++ ++  L    +  P       T   + GG+        G  +
Sbjct: 540 GRYGEAAVLVI---LHVYGMEYGLSKIYLEIP-GHSGYLTGLSIAGGMALFSPALEGAIL 595

Query: 331 GPVLMALIAV 340
           GP++M ++  
Sbjct: 596 GPLIMTVLLA 605


>gi|213854881|ref|ZP_03383121.1| hypothetical protein SentesT_12670 [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 82

 Score = 43.7 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 25/48 (52%)

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  +   GA
Sbjct: 1   IRAVALGVVVTALVQAVLGGVGLAISGVPYATLLTVVMILSCLGSVGA 48


>gi|313608815|gb|EFR84615.1| membrane protein YdbI [Listeria monocytogenes FSL F2-208]
          Length = 120

 Score = 43.7 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 242 VALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           + L ++  ++ +IP  G  IS   ++I     G +     + +   I   +    L P L
Sbjct: 1   MTLSIMVFLLGLIPVAGVIISLVPLTIIGYSIGGVEYIFYILVVVIIIHALESYVLNPKL 60

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKEKISS 358
           +     LP   TF  L+ G    G+ GL +G PV+M  + V+   +   I++ K+ IS 
Sbjct: 61  MSAKTNLPVFYTFIILIFGEHFFGIWGLIVGIPVVMFFLDVLGVTNQEEIEQPKDTISH 119


>gi|302871065|ref|YP_003839701.1| sporulation integral membrane protein YtvI [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302573924|gb|ADL41715.1| sporulation integral membrane protein YtvI [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 370

 Score = 43.7 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 63/360 (17%), Positives = 115/360 (31%), Gaps = 24/360 (6%)

Query: 1   MRETMLNPQGIMRWMIMFI---ILVSLYFLKGF----------FAPVLSALIIGFTSWPI 47
           MRE   N   +    ++ I   I    Y ++ F          F PV+  L I   S P+
Sbjct: 1   MREFTKNRFVVAMIYVILISAFIFSCAYLIRTFDIFMRFVIKAFIPVIIGLFIAEVSEPL 60

Query: 48  YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
                 +K  S T  A++  +++  +    L    Y  + E   LVS +   +   I   
Sbjct: 61  LKYLEKRKV-SRTISAILILIALNLILGFMLAEGIYILVNECMSLVSSLQNIDYDKIY-- 117

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
                +     + +     L  P    I S     TN ++ I   + +   +       I
Sbjct: 118 ---QMLDKLFASVKNIYSGLPVPIVNFIQSGVNEITNVLNQIATLSLKVVKVIPATLKGI 174

Query: 168 IF---MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
                 +++ FFF RD   +   L              I   V   +        I++  
Sbjct: 175 TIWFFSVLSSFFFMRDRHKMRAWLIQNFSAQLYREISSIVFKVIDSVVDYAKSQIILSAL 234

Query: 225 EGLVLGSAYWLAGVPS-HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
             L       +   P   V   ++  +  +   G+ I          I G+      L +
Sbjct: 235 MFLSGLIGLSIIRAPYFLVVSLLLGLLSIIPIIGSGIILLPWIAGSFIAGDTNFGMKLLV 294

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              I L + +      +V   + +    T   +  GV   G  G  IGP+L+  +  +++
Sbjct: 295 VYLIILGLRE-FASIKIVASQVGISTFTTLVSIYAGVEVFGAWGFVIGPLLVVFLKAVYE 353


>gi|261365714|ref|ZP_05978597.1| putative membrane protein [Neisseria mucosa ATCC 25996]
 gi|288565735|gb|EFC87295.1| putative membrane protein [Neisseria mucosa ATCC 25996]
          Length = 352

 Score = 43.7 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 49/340 (14%), Positives = 110/340 (32%), Gaps = 30/340 (8%)

Query: 18  FIILVSLYFLKGF-FAPVLSALIIGFTS----WPIYSSFISKKEESS------------T 60
            ++ ++L+ +  F F P+L A+I+ +        +      +    +             
Sbjct: 14  ILMGLALFVVLYFHFLPLLLAVILTYVFITKTNGLILWLRRRTLARNTFLHKSLNAHNIN 73

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            ++   T+ ++   I+ +    Y+ +      V    LA          L D        
Sbjct: 74  LISTTLTIGIVLTVILLMSLGIYHLIHGGHIPVMLTKLA--------AILEDTKNSSSLP 125

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +     L +  +        L       + R +      F+   + II   +  F    +
Sbjct: 126 QSVLNMLPNNTAEIKAYAVKLIEEYSAALTRISKNSFTSFVYILIGIIIGAMLSFHRL-N 184

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV-- 238
                +++      L             +V  +      I     G+ L     L GV  
Sbjct: 185 MRKNRRKMPPFKAELV-RRIVNFETSFERVFLAQVKISLIDTTLTGVYLYLILPLFGVEL 243

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + VI  I+ +IP    +    + I L +  +++ A    ++  + +  ++  L  
Sbjct: 244 PFKITVLVIAFIVGLIPVAGNLISNTIIIILSLGASLYVAVASLVF-LVVIHKLEYFLNA 302

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
            ++G  I+         +V   R  G+ G+ + PV  A +
Sbjct: 303 KIIGSEIESSAWELLVAMVVFERIFGVGGIIVAPVYYAYL 342


>gi|156332902|ref|XP_001619316.1| hypothetical protein NEMVEDRAFT_v1g224305 [Nematostella vectensis]
 gi|156202278|gb|EDO27216.1| predicted protein [Nematostella vectensis]
          Length = 270

 Score = 43.7 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 46/119 (38%), Gaps = 2/119 (1%)

Query: 159 IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
           + +   + ++ + I +FFF +D   I             A   +++  + K I +   G 
Sbjct: 79  MLVSIMIYVVLVPILVFFFLKDRELIGVWFRGYLPR-ERALITQVAEEMNKQIANYIRGK 137

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIF 276
            I  I  G+V   A+   G+     L +   +  ++P  GA +    V++  L +    
Sbjct: 138 VIEIIICGVVTYIAFAALGLNYAALLALFVGLSVVVPYIGAVVVTVPVALIGLFQWGFG 196


>gi|33151678|ref|NP_873031.1| hypothetical protein HD0459 [Haemophilus ducreyi 35000HP]
 gi|33147899|gb|AAP95420.1| conserved probable membrane protein [Haemophilus ducreyi 35000HP]
          Length = 299

 Score = 43.7 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 2/145 (1%)

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GG 257
             +     V + +       TII++  GL +     L  V   V  G++  ++  IP  G
Sbjct: 133 NEEHYIERVLEGVIGYLGVKTIISVLTGLSVCLLLVLLNVQYAVLWGILIFLLNYIPNIG 192

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
           + +    V +  L+         + +       +    + P ++G  + L  L  F  L+
Sbjct: 193 SILGSIPVVLQALLLNGFTVGLTVLIGVVAINMLFGNVVEPKMMGKRLGLSTLVVFLSLL 252

Query: 318 GGVRTMGLLGLFIG-PVLMALIAVI 341
                +G +G+ +  P+ M+L   +
Sbjct: 253 FWGWLLGTVGMLLSVPLTMSLKIAL 277


>gi|226326457|ref|ZP_03801975.1| hypothetical protein PROPEN_00305 [Proteus penneri ATCC 35198]
 gi|225205056|gb|EEG87410.1| hypothetical protein PROPEN_00305 [Proteus penneri ATCC 35198]
          Length = 203

 Score = 43.7 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 71/190 (37%), Gaps = 13/190 (6%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTS-WPIYSSFISKKEESSTFLAVI 65
           +PQ I   +I+      LYF  G  AP+L A+++ +   WP +   + K   +  +   I
Sbjct: 15  DPQVIALVVILIAGFSILYFFSGILAPLLVAIVLAYLLEWPTH--LLEKLGCARIWAVSI 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWT 124
                + +  + +L L      +   L+S +  + N+            P  M A  +  
Sbjct: 73  ILTLFIGISAIVILILAPTVWQQGMTLISDIPNMINKFNAFAHELPDRFPALMDAGIVDM 132

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
              +       ++E+ LK          AS  G+I L   + +I + +  FF  +D   +
Sbjct: 133 MAENLRSKFSTVAESVLK-------VSLASLIGIITLS--IYLILVPLMTFFLLKDKQQM 183

Query: 185 SQQLDSLGEH 194
              +  +   
Sbjct: 184 LNAVRRVLPK 193


>gi|87302776|ref|ZP_01085587.1| hypothetical protein WH5701_13525 [Synechococcus sp. WH 5701]
 gi|87282659|gb|EAQ74617.1| hypothetical protein WH5701_13525 [Synechococcus sp. WH 5701]
          Length = 333

 Score = 43.7 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 87/259 (33%), Gaps = 10/259 (3%)

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +V  + +  +L  +   +L + E++ +     Q    + + L D+ GG  A   + + L 
Sbjct: 57  AVALVIVALVLVGWKVSVLLLPEVLQQANQFTQLLPVLLQRLGDLAGGSMAFRSFEERLL 116

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +             +  +               + I+ M++       D     + +
Sbjct: 117 ELATWDK----------LQPLGTQLLGVAGGAASSTIQILLMVLLAILLALDPRPHQRLV 166

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +     +    + + R   + +     GMTI A+   L+  +   L  VP  +  G++ 
Sbjct: 167 LAATPQFWRPSMQSLLREAREALGGWLAGMTISAVTVFLLTWAGLALLKVPLALLSGLVC 226

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++  +P   P   TA+ + + +  +      + +   +        L P L+   + L 
Sbjct: 227 GLLTFVPTIGPTVATALPLAVALLISPAKVAQVLVLRLMLQNAEAFVLTPLLLSRTVNLL 286

Query: 309 FLPTFFGLVGGVRTMGLLG 327
                   +     +GL G
Sbjct: 287 PTVALMAQLSLGALLGLPG 305


>gi|270157491|ref|ZP_06186148.1| putative permease [Legionella longbeachae D-4968]
 gi|289164121|ref|YP_003454259.1| transporter [Legionella longbeachae NSW150]
 gi|269989516|gb|EEZ95770.1| putative permease [Legionella longbeachae D-4968]
 gi|288857294|emb|CBJ11121.1| putative transporter [Legionella longbeachae NSW150]
          Length = 363

 Score = 43.3 bits (101), Expect = 0.051,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 60/179 (33%), Gaps = 2/179 (1%)

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           +++ M+   F F    F +S+                I   +    ++     +I++I  
Sbjct: 146 TVLIMLYVAFLFAEQYFFLSKIDALFPSLENRILVNNILNHIVMNTQTYLGLKSILSIVT 205

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT--AVSIYLLIKGNIFNATCLFL 283
            L          +       ++   +  IP    I       S+ ++   +    T + L
Sbjct: 206 ALSSWIIMKWVKLDFAEFWALLIFFLNFIPNIGAIIAIAFPASLAIVQFTSWIPFTKIIL 265

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                 FIV   + P  +   + L  L   F L       GLLG+F+   +  ++ +I+
Sbjct: 266 GLGTVQFIVGNIIEPRYLSNSLNLSPLVILFTLAVWGDIWGLLGMFLAVPITVMMMIIF 324


>gi|116621992|ref|YP_824148.1| hypothetical protein Acid_2877 [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225154|gb|ABJ83863.1| protein of unknown function UPF0118 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 605

 Score = 43.3 bits (101), Expect = 0.052,   Method: Composition-based stats.
 Identities = 44/352 (12%), Positives = 107/352 (30%), Gaps = 29/352 (8%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            + + + + +LYF +    P+  A+++ F   P        +       +V+    V   
Sbjct: 15  VVAVLLAIAALYFAREILVPLAVAVLLSFLLTPSVRFLERLRIGR--LPSVLLVFLVSLA 72

Query: 74  FIVPLLFLFYYGMLEM-----------------------KELVSKVVLANQHGIPVPRWL 110
               + ++    + ++                         L        +    +    
Sbjct: 73  CAGGVGYVVGNQLFDVLNELPKYKENLRTKMESLGGRPGGSLAKATASVQELSKELAAPK 132

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
            D+P          K  + P  +       L     + +    +  G +       ++ +
Sbjct: 133 QDVPETPRRLSKTQKSAAPPAEVGKPVPVELVEPPPNALQSVRNIAGPLLAPIGKIVVIV 192

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           I  +    +     ++ L  LG    P   +       +V +   +   + ++  G  +G
Sbjct: 193 IFTIVILIKREDLRNRVLRLLGRGRLPRATQAFDDAAERVTQYLRMQFLVNSVF-GATIG 251

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
               + G+PS +  G +  ++  +P   PI   A+   + +         L   G   + 
Sbjct: 252 VGLSVIGLPSALLWGALAGLLRFMPYLGPILGGALPSVMALAVFPGWRYPLMCLGLFLIT 311

Query: 291 --IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIA 339
             +V   + P+L G    +  L             G +GL +  P+ + L+ 
Sbjct: 312 ELVVAYAVEPWLYGTHTGVSSLAILVSAAFWTTVWGPVGLVLSTPLTVCLLV 363


>gi|222100363|ref|YP_002534931.1| hypothetical protein CTN_1389 [Thermotoga neapolitana DSM 4359]
 gi|221572753|gb|ACM23565.1| Hypothetical Protein CTN_1389 [Thermotoga neapolitana DSM 4359]
          Length = 321

 Score = 43.3 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 60/186 (32%), Gaps = 1/186 (0%)

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
            ++   +I+   F       + ++  S      P   K+  +           G  ++AI
Sbjct: 135 FITAAVLIVITSFIVSSLKKLVKENVSYLFPKDPEDGKRFLKTTYSEFERFVGGQVLVAI 194

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
             G+ +G   +L  +PS   LG++  I   +P    I      + L    +      +  
Sbjct: 195 FVGVFVGVGAFLFRIPSAFFLGMLAFITDFVPYLGVIISAIPLLMLSFSVHGLYGLLIGT 254

Query: 284 WGAIELFIVDK-TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              +    ++   L P +    + + +      ++         G+ I    +  +   W
Sbjct: 255 IILVAANQLEMWILAPRIQSSALNIHWFIILITILIFGDLFSFGGVLIALPFLIFLRNYW 314

Query: 343 KESIMA 348
           K  +M 
Sbjct: 315 KHYVMG 320


>gi|116070722|ref|ZP_01467991.1| hypothetical protein BL107_13790 [Synechococcus sp. BL107]
 gi|116066127|gb|EAU71884.1| hypothetical protein BL107_13790 [Synechococcus sp. BL107]
          Length = 337

 Score = 43.3 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 43/142 (30%)

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + L +           ++       +     GMT+ A    L+      +   P  +   
Sbjct: 168 RMLLAACPRPAREQLDQLLDECRHALGGWLSGMTLSATTVFLLTWGGLLVLKAPLALLSA 227

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++   +  +P   P + T +   L +  +      + ++  I   +    L P L+   +
Sbjct: 228 LVCGFLTFVPTIGPTAATLLPTGLALLQSPQLMVSVLVFRLILQNLEAFLLTPLLLRKTV 287

Query: 306 KLPFLPTFFGLVGGVRTMGLLG 327
            L               +GL G
Sbjct: 288 NLLPTVALMAQFSLGALLGLPG 309


>gi|241759043|ref|ZP_04757155.1| putative membrane protein [Neisseria flavescens SK114]
 gi|241320864|gb|EER57097.1| putative membrane protein [Neisseria flavescens SK114]
          Length = 357

 Score = 43.3 bits (101), Expect = 0.058,   Method: Composition-based stats.
 Identities = 47/343 (13%), Positives = 106/343 (30%), Gaps = 35/343 (10%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTS---------------WPIYSSFISKKEESSTF 61
           + + L  L  L   F P+L ++I+ +                  P  +         +  
Sbjct: 19  ILMGLALLIVLHYHFLPLLLSVILTYIFITRTNGVILKLRRRVLPRNTRLHKSLNAHNIN 78

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           L        +   I+ ++ L  Y ++                  +   L D         
Sbjct: 79  LISTTLTLTIVFSIITMMSLGIYHLIHGG-------HVGFMLAKLAAILEDTKNSQDLPA 131

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                L +  +    S   L       + R +      F+   + II   +  F      
Sbjct: 132 AILNMLPNNMAEIKASAIKLIEEYRAALTRISKNSITSFVYILIGIIIGAMLSF------ 185

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA----- 236
             +  + +     LF A   +            FL    I++ +  + G   +L      
Sbjct: 186 HRLKMRKNRHKMPLFKAELMRRIVNFETSFERVFLAQVKISLIDTFLTGLYLYLVLPLFG 245

Query: 237 -GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
             +P  + + ++  I+ +IP    +    + I L +  +++ A    ++  + +  ++  
Sbjct: 246 VDLPFKMTVLIVAFIVGLIPVAGNLISNTIIIILSLGASLYVALASLVF-LVVIHKLEYF 304

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           L   ++G  I+         +V   R  G+ G+ + PV  A +
Sbjct: 305 LNAKIIGSEIESSAWELLVAMVVFERIFGIGGIIVAPVYYAYL 347


>gi|113953472|ref|YP_730790.1| hypothetical protein sync_1585 [Synechococcus sp. CC9311]
 gi|113880823|gb|ABI45781.1| Domain of unknown function, putative [Synechococcus sp. CC9311]
          Length = 355

 Score = 43.3 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 47/305 (15%), Positives = 100/305 (32%), Gaps = 25/305 (8%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + L   F  V+ A+ +      +   F  ++  +   + VI  +    +  + L  L   
Sbjct: 24  WVLLILFGAVVLAVTLDVPILKLMERFRLQRPVALLLVLVILFLGGTLVVQLLLPELLGQ 83

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
              ++  L+  ++   +  I     LSD+      S  WT+                   
Sbjct: 84  F-EQLTALLPNLIDKIRSIIASQPSLSDLNISPSESLSWTR------------------- 123

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            I  +      +     +  + ++ M +       D  S  Q L ++      A   ++ 
Sbjct: 124 -IQPVGAQLLGYAGGAANGLIQVLLMSLLAILLALDPKSHRQMLIAVSPRPARAQVTQLL 182

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGAPISF 262
                 +     GMTI A    ++  +   + GVP  +  G++  ++  +P  G +  + 
Sbjct: 183 DRCRDALGGWLAGMTISATAVFVLTWTGLAILGVPLALLSGLVCGLLTFVPTIGPSAATL 242

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             + I LLI  N+     +  +      +    L P L+   + L         +     
Sbjct: 243 LPMGIALLISPNLMLQVLVLRF--ALQNLEAFVLTPVLLSRTVNLLPTVALTAQLSLGAL 300

Query: 323 MGLLG 327
           +GL G
Sbjct: 301 LGLPG 305


>gi|332091406|gb|EGI96492.1| hypothetical protein SB521682_1611 [Shigella boydii 5216-82]
          Length = 321

 Score = 43.3 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 88/294 (29%), Gaps = 22/294 (7%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ VM + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 126 HYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKFQQMMAR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
            G++   +  IP  G+ ++       +L+    + A  +     +   +    L
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNIL 279


>gi|167561510|ref|ZP_02354426.1| hypothetical protein BoklE_03034 [Burkholderia oklahomensis EO147]
 gi|167568739|ref|ZP_02361613.1| hypothetical protein BoklC_02764 [Burkholderia oklahomensis C6786]
          Length = 361

 Score = 43.3 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 83/272 (30%), Gaps = 10/272 (3%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +A V +    +  L  L    +   +  V          + +    +      W S L  
Sbjct: 88  VAVVLLSAAIVGGLAGLTIAVIEHFEHTVPNAQNLLGQVMQIVDQ-ARTRTPEWISNLLP 146

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                 ++                    A  FG +     +  +  I        D    
Sbjct: 147 VDAEQMRAKAAGLMNKHMDQLQQGGKSVARGFGHVLFGMIIGAMIAIGV------DRHKP 200

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            Q L +        +     RIV   I+ + L     AI   L+     +   +P    L
Sbjct: 201 RQPLSTALVTRISRFSDSFRRIVFAQIKISALNAFFTAIY--LLAALPIFHQRLPLSKTL 258

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            ++T I  ++P    +   A+ + + +  ++  A    ++  I +  ++  L   ++GG 
Sbjct: 259 VLVTFIAGLLPVVGNLISNALIVAVSLSVSMGTAIASLVF-LIVIHKLEYFLNAKIIGGQ 317

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
           I+         ++      G+ G+   P+  A
Sbjct: 318 IESRAWELLLAMLVMEAAFGVPGVIAAPIFYA 349


>gi|150395562|ref|YP_001326029.1| hypothetical protein Smed_0336 [Sinorhizobium medicae WSM419]
 gi|150027077|gb|ABR59194.1| protein of unknown function UPF0118 [Sinorhizobium medicae WSM419]
          Length = 376

 Score = 43.3 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 58/171 (33%), Gaps = 2/171 (1%)

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           S  + +           ++   +   +   F   ++I +  G V      + G+      
Sbjct: 203 STIILAFPSREGRLTAIRVMNALEDALGHYFSTASLIYLALGAVTMVVALVGGLAMPPLW 262

Query: 245 GVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           G+   + + IP  G   ++   +   L+    +  A             ++  L P ++G
Sbjct: 263 GLFAFVSSFIPYLGVTFMTLALLVGGLMTHDALIVALAPATAFFFVHLAMENLLVPAILG 322

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               +     F  ++      G +G  +   L  +  +I+++ ++  +E +
Sbjct: 323 QRFDINPFLIFVAIIFWTWMWGAVGAILAFPLSLIAMIIFEQVLLPPQERQ 373


>gi|322806089|emb|CBZ03656.1| permease [Clostridium botulinum H04402 065]
          Length = 200

 Score = 43.3 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 54/161 (33%), Gaps = 9/161 (5%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P + A  I +   P+   F +K +    F  ++  + V+ L I+ +       +  + 
Sbjct: 43  LVPFIWAFGIAYILNPLMKYFQNKFKLKRIFSIIMTYIIVIGLLILFINTFVPKIIKNIG 102

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           +L           I   +W +D        ++  ++     ++  L       N I  + 
Sbjct: 103 DLFVHSPDYINQTI---QWFNDNIKYSKVYDMLMENYQISNNIPNLL------NKISNLT 153

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                  + F  + +  +F +I   +   D  S+ + L   
Sbjct: 154 NTFLNTTIKFTSFLVRFVFGLIISIYLLLDKESLIENLKKF 194


>gi|299068834|emb|CBJ40075.1| putative permease transmembrane protein [Ralstonia solanacearum
           CMR15]
          Length = 341

 Score = 43.3 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 40/322 (12%), Positives = 98/322 (30%), Gaps = 12/322 (3%)

Query: 22  VSLYFLKGFFAPVLS-----ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
            S   +    + VL      A I GF  + +     ++            +++V+ +F++
Sbjct: 16  ASYVLVAAMISAVLWLHLLSAAIAGFLVYALARRLEARLHARHVLSKRAKSIAVIGVFVI 75

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
               +     L +  LV      +   + +   L  +   +  +            L+  
Sbjct: 76  -AALILGGIGLGIGRLVEHGHGLDGMLLRIADVLDHLRDSLPPT-FADYVPQSVSELRAR 133

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               LK +G   +               + +I   +  +    D         +L   L 
Sbjct: 134 LVEMLKEHGRQ-VSTLGIDGLRASAMALVGLILGAMVAWSEAPDPAHSKPLSAALLRRLG 192

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                  + +  +V  S    +       G++         VP   +L ++T +  +IP 
Sbjct: 193 RLETAFEAVVFAQVKISALNTVLAAIYLMGVLPVLGLH---VPYSKSLVLLTFVAGLIPV 249

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
              +      + + +  ++  A     +  + +  ++  +   ++G  I          L
Sbjct: 250 AGNLISNTAIVLMSVAVSLELALASLAF-LVIVHKLEYFVNARIIGSRIDARAWELILAL 308

Query: 317 VGGVRTMGLLGLFIGPVLMALI 338
           +      G+ G+   PVL A +
Sbjct: 309 IVMEALFGVGGVIAAPVLYAYL 330


>gi|322806090|emb|CBZ03657.1| permease [Clostridium botulinum H04402 065]
          Length = 118

 Score = 43.3 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 45/109 (41%)

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           VP    +  I  I  MIP   P      +  + +  N   A  + ++  I   +    L 
Sbjct: 3   VPYAALISFIVGITNMIPYFGPFIGMIPAFIITLFFNYIKAIWVLIFIIILQQLDGWYLG 62

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           P ++G  + L  +   F +  G  T G++G+F+   + A+I +   + I
Sbjct: 63  PKILGNQVGLSPIWIIFAITIGGGTFGVMGMFLSVPIAAIIKIYLDKYI 111


>gi|194431908|ref|ZP_03064198.1| inner membrane protein YdgG [Shigella dysenteriae 1012]
 gi|194419816|gb|EDX35895.1| inner membrane protein YdgG [Shigella dysenteriae 1012]
          Length = 294

 Score = 42.9 bits (100), Expect = 0.069,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 85/284 (29%), Gaps = 22/284 (7%)

Query: 48  YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
               +  +      ++++ T+ VM + ++ L +L        + L             + 
Sbjct: 1   MQHMVRWRVPRVLAVSILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQALE 59

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
             L  +   +   +L      +     + +     +N +  I         + L+     
Sbjct: 60  PLLQRVGIDVSVDQLAHYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV---- 115

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
                           +  +   +     P       +     +    +  T I+I  GL
Sbjct: 116 --------------PQLPGKFQQMMAR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGL 159

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           V  +      V      G++   +  IP  G+ ++       +L+    + A  +     
Sbjct: 160 VAWAMLAALDVRFAFVSGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYL 219

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +   +    L P ++G  + L  L  F  L+     +G +G+ +
Sbjct: 220 LINLVFGNILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLL 263


>gi|167579786|ref|ZP_02372660.1| hypothetical protein BthaT_16671 [Burkholderia thailandensis TXDOH]
 gi|167617861|ref|ZP_02386492.1| hypothetical protein BthaB_16241 [Burkholderia thailandensis Bt4]
 gi|257140293|ref|ZP_05588555.1| hypothetical protein BthaA_13965 [Burkholderia thailandensis E264]
          Length = 361

 Score = 42.9 bits (100), Expect = 0.074,   Method: Composition-based stats.
 Identities = 36/272 (13%), Positives = 84/272 (30%), Gaps = 10/272 (3%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +A V +    +  L  L    +   +  V          + +    +      W S L  
Sbjct: 88  VAVVLLSAAIVGGLAGLTIAVIEHFEHTVPNAQNLLGQVMQIVDQ-ARTRTPEWISNLLP 146

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                 ++                    A  FG +     +  +  I        D   +
Sbjct: 147 VDAEQMRAKATGLMNKHMDQLQQGGKSVARGFGHVLFGMIIGAMIAIGV------DRHKL 200

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            Q L +        +     RIV   I+ + L     A+   L++    +   +P    L
Sbjct: 201 RQPLSTALVARISRFSDSFRRIVFAQIKISALNAFFTALY--LLVALPIFHQRLPLSKTL 258

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            ++T I  ++P    +    + + + +  ++  A    ++  + +  ++  L   ++GG 
Sbjct: 259 VLVTFIAGLLPVVGNLISNTLIVAVSLSVSMGTAIASLVF-LVVIHKLEYFLNAKIIGGQ 317

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
           I+         ++      G+ G+   P+  A
Sbjct: 318 IESRAWELLLAMLVMEAAFGVPGVIAAPIFYA 349


>gi|149202519|ref|ZP_01879491.1| hypothetical protein RTM1035_07879 [Roseovarius sp. TM1035]
 gi|149143801|gb|EDM31835.1| hypothetical protein RTM1035_07879 [Roseovarius sp. TM1035]
          Length = 351

 Score = 42.9 bits (100), Expect = 0.077,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 89/215 (41%), Gaps = 7/215 (3%)

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
           P + + +       +   ++   A + G I     L I+F+     F + +    + +L+
Sbjct: 107 PDAEEAVFNAVSTLDVAGYLRALAGQAGGIMQGTVLVILFVG----FLFAERIWFTTKLE 162

Query: 190 SL-GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           SL G+        +I   +   +    L  T++++  GL++        +    ALG++T
Sbjct: 163 SLFGDAKKAERVGRIISSIIHRVNYYLLVKTLVSVVTGLMVYGVAQFFALDLAGALGILT 222

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            ++  IP  G+ ++   V++   ++  +   A  +FL   I  FI    + P L+G  ++
Sbjct: 223 FVLNYIPSIGSIVATVLVALVAYVQLADGTTALVIFLIVGIIQFINGNIIDPMLMGRALR 282

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +        L       G+ G+F+   +M  + ++
Sbjct: 283 VSSFGIIISLAFWAAVWGIPGMFLAVPIMVALMIV 317


>gi|298369611|ref|ZP_06980928.1| membrane protein [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282168|gb|EFI23656.1| membrane protein [Neisseria sp. oral taxon 014 str. F0314]
          Length = 354

 Score = 42.9 bits (100), Expect = 0.078,   Method: Composition-based stats.
 Identities = 48/344 (13%), Positives = 108/344 (31%), Gaps = 37/344 (10%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTS----WPIYSSFISKKEESS------------T 60
           + + +  L  L   F P+L A+I+ +        +      +    +             
Sbjct: 16  ILMGMALLAVLYFHFLPLLLAVILTYVFITKTNGLILWLRRRTLTRNTFLHKSLNAHNIN 75

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            ++   T+ ++   I+ +    Y+ +      V    LA          L D        
Sbjct: 76  LISTTLTIGIVLTVILLMSLGIYHLIHGGHITVMLTKLA--------AILEDTKNSSSLP 127

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +     L +  +        L       + R +      F+   + II   +  F     
Sbjct: 128 QSVLNMLPNNTAEIKAYAVKLIEEYSAALTRISKNSFTSFVYILIGIIIGAMLSF----- 182

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL----A 236
              ++ + +      F A   +            FL    I++ +  +     +L     
Sbjct: 183 -HRLNMRKNRRKMPPFKAELVRRIVNFETSFERVFLAQVKISLIDTALTVVYLYLILPLF 241

Query: 237 GVPSHVALGVIT--AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           GV     L V+    I+ +IP    +    + I L +  +++ A    ++  + +  ++ 
Sbjct: 242 GVELPFKLTVLVIAFIVGLIPVAGNLISNTIIIILSLGASLYVAVASLVF-LVVIHKLEY 300

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
            L   ++G  I+         +V   R  G+ G+ + PV  A +
Sbjct: 301 FLNAKIIGSEIESSAWELLVAMVVFERIFGVGGIIVAPVYYAYL 344


>gi|152965676|ref|YP_001361460.1| transglycosylase [Kineococcus radiotolerans SRS30216]
 gi|151360193|gb|ABS03196.1| Transglycosylase domain protein [Kineococcus radiotolerans SRS30216]
          Length = 1995

 Score = 42.9 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 74/248 (29%), Gaps = 34/248 (13%)

Query: 113  IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
            +P       L     +   SL   +   L          F    G   L    +++  + 
Sbjct: 927  LPLMPTFERLALTFGTALGSLFERAGQSLAGPEFQRFYVFLETQGPGILSSLGTLVGSVF 986

Query: 173  ALFFFYRD--GFSISQQLDSLG---EHLFP--------AYWKKISRIVPKVIRST--FLG 217
            ++F    +  G   +Q + SL    +              ++   R V +   +   FLG
Sbjct: 987  SVFNGLAEAFGPIAAQTITSLAGLTQRFADFLHTAGDNESFQDFLRYVQENTPAVMEFLG 1046

Query: 218  MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFN 277
                A    +   + +        V LGVI  +  MI    P      +I L + G +  
Sbjct: 1047 SLTDAFVNIIRSMAPF------GPVVLGVIGFLADMIAAVPPGVL--AAIALAVTGIVTA 1098

Query: 278  ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
             T L    A    I+         G    LP L       GG  T+ + G+     L A 
Sbjct: 1099 FTILGPVIAFVSTII--------AGISAGLPVLAVIIAAFGGPVTLIVAGVV---ALGAA 1147

Query: 338  IAVIWKES 345
                W  S
Sbjct: 1148 FLAAWHHS 1155


>gi|322832640|ref|YP_004212667.1| hypothetical protein Rahaq_1923 [Rahnella sp. Y9602]
 gi|321167841|gb|ADW73540.1| hypothetical protein Rahaq_1923 [Rahnella sp. Y9602]
          Length = 336

 Score = 42.9 bits (100), Expect = 0.082,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 99/282 (35%), Gaps = 18/282 (6%)

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +  +    +     L +  +   ++   ++ +     +S +     +          P 
Sbjct: 62  VVVAIIATLVISCLTLAIAGIADFLMEDMRNPVAFNAMVSHLLTDAQSRLSPVLLHYLPA 121

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +++ L  +FL+      +   A   G       L++I  +I        G  IS Q    
Sbjct: 122 NIEELQRSFLQWLREHIVMIQA--VGKNAAHVFLTMIIGMIL-------GAIISLQQPRK 172

Query: 192 GEHLFPAYWKKISR--IVPKVIRSTFLGMTIIAIGEGLVLGSAYW----LAGV--PSHVA 243
           GE   P   + + R  ++ +  R+       I++   ++ G   +    L G+  P    
Sbjct: 173 GELNAPLKKELLQRMHLLGEAFRNVVFAQFQISLINTVLSGIFLFGILPLFGIHLPLAKT 232

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           L V+T +  ++P    +    +   + +  +++    +  +  I +  V+  L   +VG 
Sbjct: 233 LVVVTFVCGLLPVIGNLISNTLIFIVGLSLSLWVGALVLAY-LIIIHKVEYFLNARIVGS 291

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            IK         ++      G+ G+   P+  A +    KE+
Sbjct: 292 RIKAKSWEVLLAMLIFEAAFGIPGVVAAPIYYAYLKSELKEA 333


>gi|326386642|ref|ZP_08208264.1| hypothetical protein Y88_2536 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208957|gb|EGD59752.1| hypothetical protein Y88_2536 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 382

 Score = 42.5 bits (99), Expect = 0.088,   Method: Composition-based stats.
 Identities = 39/309 (12%), Positives = 88/309 (28%), Gaps = 46/309 (14%)

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP--GGMWASELWTKHLSHPQS 132
           ++P+  +    ++ +  +   V LA   G  +    + +P      A +L     +H   
Sbjct: 93  VLPVPRILRIAIVLLGAVAFLVWLAVFAGSQLAAQAAAMPRLIATQAQKLGDIAHAHGLF 152

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           ++ L  + +       +       G +F  +  + + MI+ ++F         + L  L 
Sbjct: 153 VEKLDASRIAEQIAGGVGPVTQALGGLFGGFTTAFLIMILGIYFVLEP-DLYRRGLAWLM 211

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL----------------- 235
                  W   + ++ + +R    G  I    EG+      WL                 
Sbjct: 212 PAESRDRWHDTAHLMGRALRRLLFGRLIGMTSEGIATWLLLWLWNVPMAALLGLLTGLLA 271

Query: 236 ----AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
                G P   AL ++                                       I   +
Sbjct: 272 FLPNIGAPISGALMILVGF---------------------SEGTHTGLYCVAVYLIVQTV 310

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIK 350
               + P +      L         +      GLLGL +  P++  L   + +++     
Sbjct: 311 DGNIVVPMVAKKTADLAPALVLGAQLIFGVLFGLLGLILADPLVAMLKIALERQAARNHT 370

Query: 351 ENKEKISSN 359
             ++ ++  
Sbjct: 371 IREDDLARE 379


>gi|328542894|ref|YP_004303003.1| Conserved domain protein, putative [Polymorphum gilvum SL003B-26A1]
 gi|326412640|gb|ADZ69703.1| Conserved domain protein, putative [Polymorphum gilvum SL003B-26A1]
          Length = 389

 Score = 42.5 bits (99), Expect = 0.090,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 59/186 (31%), Gaps = 3/186 (1%)

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK-KISRI 206
           F+ RF +           S   + I + F   +  +  ++  +L      A     +   
Sbjct: 128 FVTRFVAAGATFVTTMAGSASLVFIYVVFLLIEQSTFDRKYRALFTSPERAQAAFALREE 187

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI--SFTA 264
           + + +       T ++I  GL+        G+P     G I  ++  IP    +      
Sbjct: 188 INRRVLHYIGIKTAVSISTGLLTTLLLTAIGLPYAALFGFIAFLLNYIPTIGSLIAVLFP 247

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             + L+          + L      F +   + P L+G  + L  +     L       G
Sbjct: 248 SVLALVYYDEFGPFIAITLGLGAIQFAIGNLIEPRLMGSSLNLSGIVIMLSLALWGAIWG 307

Query: 325 LLGLFI 330
           + G+ +
Sbjct: 308 ITGMVL 313


>gi|307107520|gb|EFN55763.1| hypothetical protein CHLNCDRAFT_52421 [Chlorella variabilis]
          Length = 734

 Score = 42.5 bits (99), Expect = 0.092,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 54/169 (31%), Gaps = 4/169 (2%)

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS---RIVPKVIRSTFLGMTIIA 222
           ++   +I  F    D  +I + + SL        +  ++    I   +          IA
Sbjct: 307 AVGISLILSFMVVWDLPTIQRGVQSLRTSRVAPIYNTVAPSLEIFATLFGKALQAQARIA 366

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCL 281
               ++     W   +P    L +   +   IP  G  IS   +    L +        +
Sbjct: 367 AVNTILTCLGMWALQLPGVGLLSLFVFVCGFIPIAGVIISTVPIGFVALTEYGFTKLALV 426

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            L      F+    L P +    +KL  L     LV    ++G+  L +
Sbjct: 427 LLMITGVHFVEAYGLNPAIYSAHLKLHPLLVLAVLVVAEHSLGVWSLLL 475


>gi|323693345|ref|ZP_08107561.1| hypothetical protein HMPREF9475_02424 [Clostridium symbiosum
           WAL-14673]
 gi|323502589|gb|EGB18435.1| hypothetical protein HMPREF9475_02424 [Clostridium symbiosum
           WAL-14673]
          Length = 122

 Score = 42.5 bits (99), Expect = 0.094,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 48/113 (42%), Gaps = 1/113 (0%)

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           I    A+   G         I  L+ GN   A  L +   I + I+   L P ++G  + 
Sbjct: 5   IAIFDALPVFGTGGIMIPWIIIELLSGNYALAGGLLI-LYIIITIMRNILEPKILGSQLG 63

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +  +     ++ G R +G+LG+   P+   ++ V+     + + +N  K+++ 
Sbjct: 64  INPIVVLLAVLIGGRLLGVLGMIFFPITAYVLTVLHDAGKIKLYKNPPKLNNQ 116


>gi|14276149|gb|AAK58114.1|AF145699_1 unknown [Staphylococcus aureus]
          Length = 119

 Score = 42.5 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 42/104 (40%), Gaps = 1/104 (0%)

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G  I+ +   +   I  + +    L +   +  F+    + P ++G  +K+  L   F 
Sbjct: 2   LGPTIAISPAIVIAAIT-SPWMLLKLAVVWTLVQFVEGHFISPNIMGKTLKIHPLTIIFI 60

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           L+   + +G++G+ +G    A++ V+        K    +   N
Sbjct: 61  LLCAGKLLGIVGVILGIPGYAILKVLVTHLFQLFKRRYNRFYGN 104


>gi|15964491|ref|NP_384844.1| putative permease protein [Sinorhizobium meliloti 1021]
 gi|307308434|ref|ZP_07588138.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
 gi|307318997|ref|ZP_07598428.1| protein of unknown function UPF0118 [Sinorhizobium meliloti AK83]
 gi|15073668|emb|CAC45310.1| Putative permease [Sinorhizobium meliloti 1021]
 gi|306895411|gb|EFN26166.1| protein of unknown function UPF0118 [Sinorhizobium meliloti AK83]
 gi|306901037|gb|EFN31645.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
          Length = 376

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 59/171 (34%), Gaps = 2/171 (1%)

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           S  + +           ++   +   +   F   ++I +  G +      + G+      
Sbjct: 203 STIILAFPSREGRLSAIRVMNALEDALTQYFSTASLIYLALGFITMVIALVGGLAMPPLW 262

Query: 245 GVITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           G+   + + IP  G   ++ + V   L+    +  A    +        ++  L P ++G
Sbjct: 263 GLFAFVSSFIPYLGVTFMTLSLVVGGLMTHDALIVAIAPAVAFFTVHLAMENLLVPAILG 322

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               +     F  ++      G +G  +   L  +  +I+++ ++   E +
Sbjct: 323 QRFDINPFLVFVAIIFWTWMWGAVGALLAFPLSLIAMIIFEQILLPQPERQ 373


>gi|312087605|ref|XP_003145537.1| hypothetical protein LOAG_09962 [Loa loa]
 gi|307759298|gb|EFO18532.1| hypothetical protein LOAG_09962 [Loa loa]
          Length = 751

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 59/199 (29%), Gaps = 20/199 (10%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK--ISRI 206
           I      FG+   ++ + I   +  L++       I      L + L P++         
Sbjct: 565 ILAIVINFGLELFNFFIEITVFLTTLYYLLASSQDIWLPTKWLSDTLPPSHDTTGSARLY 624

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           +   I     G+ +++    L    A   A VP              +     +      
Sbjct: 625 IIPAIEKAISGVFVLSAKMSLFYVLAAVFASVP--------------VIAPCFVCIFGFL 670

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
              L +     A    L         D      L G         T   ++GG+  +GL 
Sbjct: 671 ELYLAEHETAAALLFLLTSLAPKVFADTAFYNELRGS----HPYVTGLAIIGGIYWLGLQ 726

Query: 327 GLFIGPVLMALIAVIWKES 345
           G  IGP+L+  + V+    
Sbjct: 727 GAIIGPILLCSMIVLLNVY 745


>gi|307129481|ref|YP_003881497.1| membrane protein [Dickeya dadantii 3937]
 gi|306527010|gb|ADM96940.1| membrane protein, putative [Dickeya dadantii 3937]
          Length = 336

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 55/318 (17%), Positives = 112/318 (35%), Gaps = 15/318 (4%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F A  L   II   + P +   IS K      +AVI+T+ V  L ++    +        
Sbjct: 33  FIAGFLVYEIINLLT-PYFQKVISGKRARLAVVAVISTLVVCLLSVIFGTLVGLLMQEMK 91

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
              V    +A        + ++ +PG +  S    +H     +        L+  G DF+
Sbjct: 92  DTSVFNARIAFILDDVQKQLMTYLPGYLPVSVEELQH--EFVTWLQKHVVMLQNMGKDFL 149

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
             F +    + L   +S+  +   +     D   +  +L      L  ++   +   V  
Sbjct: 150 HGFVTMLIGMILGAIISLYNIEPTV-----DKPLLKTELMHRVALLSSSFRNIVFAQVKI 204

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            + +T L         G++ G    L   P    L V+T I  ++P    +   +V    
Sbjct: 205 SLVNTVLSAI---FILGILPGFGIHL---PFAKTLVVLTFIFGLLPVIGNLISNSVVFIA 258

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            +  ++  A    ++  + +  ++  L   +VG  IK         ++      G+ G+ 
Sbjct: 259 ALSISVPIALLALVYLML-IHKLEYFLNAQIVGTRIKAHAWEILLAMLVFEAAFGISGVI 317

Query: 330 IGPVLMALIAVIWKESIM 347
             P+  A +    +E+ +
Sbjct: 318 AAPIYYAYLKSELREAAL 335


>gi|297520935|ref|ZP_06939321.1| inner membrane protein YhhT [Escherichia coli OP50]
          Length = 248

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/251 (11%), Positives = 85/251 (33%), Gaps = 21/251 (8%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++   + +IL  ++        +L AL       P+ + FI +  +       +A   V
Sbjct: 14  LLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITIV 68

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E +S +   N+               +       + +   
Sbjct: 69  VVVMLIALTALVGVLAASFNEFISMLPKFNKE--------------LTRKLFKLQEMLPF 114

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L +  E  L+    + +  F +           S++ +++ + F   +   +  ++  
Sbjct: 115 LNLHMSPERMLQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKM-R 173

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +   + R +  V     L   + ++  G+++     L GV   +   V+  +
Sbjct: 174 FALNNPQIHIAGLHRALKGVSHYLALKTLL-SLWTGVIVWLGLELMGVQFALMWAVLAFL 232

Query: 251 MAMIPGGAPIS 261
           +  +P    + 
Sbjct: 233 LNYVPNIGAVI 243


>gi|251790940|ref|YP_003005661.1| hypothetical protein Dd1591_3366 [Dickeya zeae Ech1591]
 gi|247539561|gb|ACT08182.1| conserved hypothetical protein [Dickeya zeae Ech1591]
          Length = 336

 Score = 42.1 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 111/319 (34%), Gaps = 17/319 (5%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F A  L   II   + P +   IS K      +AVI+T+ V  L ++    +        
Sbjct: 33  FIAGFLVYEIINLLT-PYFQKVISGKRARLAVVAVISTLVVCLLSVIFGSLVGLLMQEMK 91

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
              V    +A        + ++ +PG +  S    +H       K +    L+  G DF+
Sbjct: 92  DTSVFNARIAFILEDVQKQIMTYLPGYLPVSVEELQHEFVMWLQKHV--EMLQNMGKDFL 149

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
             F +    + L   +S+  +   +             L +   H           IV  
Sbjct: 150 HGFVTMLIGMILGAIISLYSIEPTV---------EKPLLKTELMHRVALLSSSFRNIVFA 200

Query: 210 VIRSTFLGMTIIAI-GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
            ++ + +   + AI   G++ G    L   P    L  +T I  ++P    +   +V   
Sbjct: 201 QVKISLVNTVLSAIFILGVLPGFGIHL---PFAKTLVALTFIFGLLPVIGNLISNSVVFI 257

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
             +  ++  A    ++  + +  ++  L   +VG  IK         ++      G+ G+
Sbjct: 258 AALSISLPIALLALVYLML-IHKLEYFLNAQIVGTRIKAHAWEILLAMLVFEAAFGISGV 316

Query: 329 FIGPVLMALIAVIWKESIM 347
              P+  A +    +E+ +
Sbjct: 317 IAAPIYYAYLKSELREAAL 335


>gi|148242405|ref|YP_001227562.1| permease [Synechococcus sp. RCC307]
 gi|147850715|emb|CAK28209.1| Predicted permease [Synechococcus sp. RCC307]
          Length = 345

 Score = 42.1 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 66/215 (30%)

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
           +P  +     +   +     L    E+    + +  +            +  + ++ M +
Sbjct: 97  LPQLLQRVGAFLSEIRGVGPLGSSLESSGGLSALQPLGSQLLGLAGGAANSSIQVLLMAL 156

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
                  D       L +     +    +++ +     +     GMTI AI   L+  + 
Sbjct: 157 LALLLCLDPQHHINLLIAATPRFYRPQGRRLLQQCRDALGGWLAGMTISAISVFLLTWAG 216

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
                VP  +  G++  ++  +P   P   T +   L +  +   +  + +   I     
Sbjct: 217 LAWLQVPLALLSGLVCGLLTFVPTIGPTVATLLPTALALVVSPELSLKVIVLRLILQNGE 276

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
              L P L+   + L         +     +GL G
Sbjct: 277 AFLLTPLLLSRTVNLLPTVALMAQLSLGALLGLPG 311


>gi|103486897|ref|YP_616458.1| hypothetical protein Sala_1411 [Sphingopyxis alaskensis RB2256]
 gi|98976974|gb|ABF53125.1| protein of unknown function UPF0118 [Sphingopyxis alaskensis
           RB2256]
          Length = 369

 Score = 42.1 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 71/218 (32%), Gaps = 1/218 (0%)

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            H      L    +  N    + R  +  G   L    S++ +++   F   +     + 
Sbjct: 138 DHGMGSFQLDTRTIADNIAGTVGRVTAAVGT-VLGALTSLVMIVVLGIFIAIEPRLYERG 196

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  +        +   +  +   +R    G  +    EG+    A    G+P    LG++
Sbjct: 197 VAWMLPMNARENFYITTARMGFTLRRLMAGRLLGMFVEGIGTWLACLAVGIPMAALLGLL 256

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           T ++A IP    I    + + +                 +   +    + P +    + L
Sbjct: 257 TGLLAFIPNIGAILSGVLLVLVGFSAGTDTGLWAIGIYLVVQTVDGYLIVPMVAKKTVDL 316

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
                    +     +GL+GLF+   ++A+I V  +  
Sbjct: 317 APALVLGAQILFGALLGLMGLFLADPIVAMIKVALERE 354


>gi|124023341|ref|YP_001017648.1| permease [Prochlorococcus marinus str. MIT 9303]
 gi|123963627|gb|ABM78383.1| Predicted permease [Prochlorococcus marinus str. MIT 9303]
          Length = 360

 Score = 42.1 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/309 (11%), Positives = 95/309 (30%), Gaps = 10/309 (3%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP---L 78
           V  + L+     + + +++      +     S+K    +       + ++ L +V     
Sbjct: 17  VLFWSLREVLIHLFAGVVLAMALCTLVGELRSRKPMPRSMA---LLICLVALVLVVSMAT 73

Query: 79  LFLFYYGMLEMKELVSKVVLANQH----GIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
             +      +  +L+ ++  A +      I      S +  G+  S+   +       L 
Sbjct: 74  AIVVPPFTEQFHQLLLQLPSAAKELWKLAIGAINQTSAMVYGVNNSKGGWEEQLFANGLN 133

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
            L +     +G+    +             + ++F++           +      SL   
Sbjct: 134 ALPDGASLASGVREGLQGLLGLAGNLGSGLVQLLFVLAMSLMVAVQPTAYRDVAISLLPS 193

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            +    + I       + S  +G+ I +    L+      L G+   +A  ++  ++ +I
Sbjct: 194 FYRRRARSILSQCGDALSSWMVGVLISSFCVALLAAIGLSLLGIKLVMANALLAGMLNVI 253

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P   P   T   + + +    + A  +     +   +    + P ++   +KL    T  
Sbjct: 254 PNVGPTLSTIFPMSVALLDAPWKAVAVLGLYVVIQNLESYVITPSVMHHQVKLLPGLTLT 313

Query: 315 GLVGGVRTM 323
                    
Sbjct: 314 AQFVFTVVF 322


>gi|33322751|gb|AAQ07110.1|AF496422_1 UPF0018 permease [Lactobacillus delbrueckii subsp. lactis]
          Length = 118

 Score = 42.1 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 44/114 (38%), Gaps = 1/114 (0%)

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD-KTLRPFLVGGP 304
           ++T +  +IP   PI    + I          A  + +   + +  +D   L P L+   
Sbjct: 1   LVTGLGNLIPYFGPILGYGMVILACTLSQNMTALIVGMIILLLIQAIDGNILNPKLLSSA 60

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           I +  L     ++ G    G +G+ I   + AL+   ++  I   ++  EK   
Sbjct: 61  IHIHPLYVIVCVIAGGAMGGFVGMLIAVPMGALLKTEFERLIAYRQKQLEKSKE 114


>gi|67924622|ref|ZP_00518034.1| hypothetical protein CwatDRAFT_0925 [Crocosphaera watsonii WH 8501]
 gi|67853521|gb|EAM48868.1| hypothetical protein CwatDRAFT_0925 [Crocosphaera watsonii WH 8501]
          Length = 136

 Score = 42.1 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 41/101 (40%)

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           +P  +   V   +M ++P             +L   N + A  + +   I   I D  + 
Sbjct: 1   IPFSLLFAVFIGVMEILPFIGATLGIGTVTIILTFINWWLAIQVLIISIIIQQIKDNLIA 60

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           P ++G    LP +  F  L+ G +  GLLG+ +   L  +I
Sbjct: 61  PRIMGNLTGLPPVIIFIALLLGAKIGGLLGVILAIPLTGVI 101


>gi|154249893|ref|YP_001410718.1| hypothetical protein Fnod_1214 [Fervidobacterium nodosum Rt17-B1]
 gi|154153829|gb|ABS61061.1| protein of unknown function UPF0118 [Fervidobacterium nodosum
           Rt17-B1]
          Length = 335

 Score = 41.7 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/272 (11%), Positives = 78/272 (28%), Gaps = 4/272 (1%)

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L  Y  + +   V+ +    +       ++ +I    +       +    + +  ++E +
Sbjct: 66  LLIYFGVLIYAFVNIIPPVFKQVNSFYEFMKNILDSKYWENYLVDNPELSEIIGKIAE-W 124

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
                 + I   A        ++ + I + I+   +        ++ L  L         
Sbjct: 125 ASPKINELITTLAVNLAKSVPNFLVVIFYSILFTVYITIYTNWTTKSLPGLFPKKVRGLV 184

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAP 259
           +   + +   + S    + + A    +     +        + L     +   IP  G  
Sbjct: 185 EDFLKKLGIALSSYVDVLLLGAFIVSIAFYILFSFYLPEYKILLAFWGFVTNFIPIVGVV 244

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           I +  + I  L  G         +   I L      +  F++     +  +     +   
Sbjct: 245 IEWIPILIVSLGLGLKNFIIVNIVVMLIHLGAFLFFI--FIMKKRADINPVLMLIFIFLV 302

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
               GL+G F    +      +W E +    E
Sbjct: 303 GILYGLVGTFFAVPVAIFFVTLWNEFVKNELE 334


>gi|119510912|ref|ZP_01630035.1| hypothetical protein N9414_20520 [Nodularia spumigena CCY9414]
 gi|119464440|gb|EAW45354.1| hypothetical protein N9414_20520 [Nodularia spumigena CCY9414]
          Length = 343

 Score = 41.7 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 45/334 (13%), Positives = 116/334 (34%), Gaps = 12/334 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           +  + I L  L+ ++     + +A+++      +   F         +   ++ + V+ +
Sbjct: 9   FFALVISLYILWEIRRLLLLLFTAIVLATAISQLVQRFQRS-GMQRIWAVWLSLLIVLIV 67

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            I   + +    + + +ELV            +  WL     G + +     +L    +L
Sbjct: 68  LIGCFVLIVPPFIDQFEELVQLFPTGVAQIQQMIIWLEGTIVGPYIT-----NLPDINNL 122

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
               +   +      I  F++ F  +     + I+ +++ +     +     +       
Sbjct: 123 IQQLQPLTENLLRQAIGFFSTGFTAVLELLLVIILTLMLLV-----NPQPYRKVFVRCFP 177

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
             +    ++I  +  + +    +G  I  +  G +      +  VP  +A  V+  ++  
Sbjct: 178 SFYRHRVEEILTLCGEGLGHWTVGALITMVFIGFLSLLGLLVLRVPLALAHAVLAGLLNF 237

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P     + + +      + A  + +   I   I    L P ++   + L    T 
Sbjct: 238 IPNIGPTLSVILPMTIGFLDAPWKAIAVLILYLIIQNIESYWLTPTVMAKQVSLLPAFTL 297

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              +      G LGL +  + +A++A  W E ++
Sbjct: 298 TAQLFFAGFFGALGLIMA-LPLAVVAKTWIEELV 330


>gi|332097880|gb|EGJ02853.1| hypothetical protein SD15574_0317 [Shigella dysenteriae 155-74]
          Length = 291

 Score = 41.7 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 32/278 (11%), Positives = 78/278 (28%), Gaps = 21/278 (7%)

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
           +          I    ++   ++ L +L        + L             +   L  +
Sbjct: 3   RWRVPRVLAVSILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRV 62

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
              +   +L      +     + +     +N +  I         + L+           
Sbjct: 63  GIDVSVDQLAHYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV---------- 112

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
                     +  +   +     P       +     +    +  T I+I  GLV  +  
Sbjct: 113 --------PQLPGKFQQMMAR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAML 162

Query: 234 WLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
               V      G++   +  IP  G+ ++       +L+    + A  +     +   + 
Sbjct: 163 AALDVRFAFVSGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVF 222

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              L P ++G  + L  L  F  L+     +G +G+ +
Sbjct: 223 GNILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLL 260


>gi|150020774|ref|YP_001306128.1| hypothetical protein Tmel_0882 [Thermosipho melanesiensis BI429]
 gi|149793295|gb|ABR30743.1| protein of unknown function UPF0118 [Thermosipho melanesiensis
           BI429]
          Length = 334

 Score = 41.7 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 68/209 (32%), Gaps = 3/209 (1%)

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
            +++    +    F  +       + ++I F ++   +       + + L ++       
Sbjct: 122 EWIQPKLNELTNFFLDKIAKGTPTFFVTIFFSVLLTIYTLLYSSWLKKSLPNIFPKYIRN 181

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GG 257
             +     V   + S    + I A+   +              + L     I  +IP  G
Sbjct: 182 ICENFLEKVYSALSSFVDVVIINAVITAIAFYILSSFYFKDMAIILSFWAGITNLIPIVG 241

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
               +  V ++ L  G       +     I + +    +   ++   + L  +     ++
Sbjct: 242 VFFEYIPVFLFSLTLG--IKGFIIVNLFVIAIHLGLFVIFVNVMKMHLNLNPVLMIISII 299

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESI 346
              +  GL+G+F+   L+  IA  W E I
Sbjct: 300 IVNQIFGLVGIFLAVPLLIFIAAYWDEFI 328


>gi|291518611|emb|CBK73832.1| Predicted permease [Butyrivibrio fibrisolvens 16/4]
          Length = 126

 Score = 41.7 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 47/117 (40%)

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           +P  + + ++  I  ++P   P++   V   +L   +I  A     + AI   I    ++
Sbjct: 6   MPWKIGISILMGITNLVPSVGPVAGAIVGGVVLAFYDIKQALWFLAFTAILQTIDGLIIK 65

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           P L G    +  +     ++ G    G+LG+     ++A+   + K   +  K   +
Sbjct: 66  PKLFGDSFGISGVWVLIAMLIGGGVFGVLGIIFVVPVVAIGKYLIKNVYLPNKHKDD 122


>gi|221211215|ref|ZP_03584194.1| putative membrane protein [Burkholderia multivorans CGD1]
 gi|221168576|gb|EEE01044.1| putative membrane protein [Burkholderia multivorans CGD1]
          Length = 405

 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 85/276 (30%), Gaps = 14/276 (5%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +A V +    +  L  L    +   +  V  +       + +    +      W + +  
Sbjct: 132 VAVVLLAIAIVGALTGLSIAVVEHFEHTVPNLQALLGQLMQIVEQ-TRARTPAWIANVLP 190

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +   ++   +  T             A  FG +     +  +  I             
Sbjct: 191 VDVEQMKAKAAVLMTAHMDQLQQSGKNVARGFGHVLFGMIIGAMIAI----------GVE 240

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VPSHV 242
             ++             + +    +++ +      I A   GL L  A  +    +P   
Sbjct: 241 HGKVRRPLSTALVTRVSRFADAFRRIVFAQIKISAINAAFTGLYLLVALPIFHERLPLSK 300

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L ++T I+ ++P    +    + + + +  ++  A     +  + +  ++  L   ++G
Sbjct: 301 TLVLLTFIVGLLPVIGNLVSNTLIVAVSLSVSMGTAIASLAF-LVIIHKLEYFLNAKIIG 359

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           G I+         ++      GL G+   P+  A I
Sbjct: 360 GQIESRAWELLLAMLVMEAAFGLPGIIAAPIFYAYI 395


>gi|215414073|ref|ZP_03422730.1| transmembrane protein [Mycobacterium tuberculosis 94_M4241A]
          Length = 159

 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 1/127 (0%)

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLI 271
                  ++A+ +   +G+   + GVP  + L  +    A IP  GA ++     +  L+
Sbjct: 6   GYARATFLVALTDAAGVGAGLAVMGVPLALPLASLVFFGAFIPLIGAVVAGFLAVVVALL 65

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
              I  A            +    L+P ++G  + +  L     +  G    G++G  + 
Sbjct: 66  AKGIGYALITVGLLIAVNQLEAHLLQPLVMGRAVSIHPLAVVLAIAAGGVLAGVVGALLA 125

Query: 332 PVLMALI 338
              +A  
Sbjct: 126 VPTVAFF 132


>gi|308807793|ref|XP_003081207.1| unnamed protein product [Ostreococcus tauri]
 gi|116059669|emb|CAL55376.1| unnamed protein product [Ostreococcus tauri]
          Length = 445

 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 54/358 (15%), Positives = 109/358 (30%), Gaps = 53/358 (14%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPI--------YS 49
           R        ++   ++ I   S Y     L     P+++A+       P+        Y 
Sbjct: 60  RAASARDVTVITLGVVVIASASAYWLLQVLAYLLRPLVTAVGAALLLRPLVDFVSDKGYQ 119

Query: 50  SFISKKEESS-----------TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV---SK 95
               ++  +              +A++  ++V C     L++  Y G + +   V   + 
Sbjct: 120 RETLRRHRARLLCCGGTFTVPRIVAIVLALAVTCAVFGTLIWALYLGRVYVAVHVKDPAW 179

Query: 96  VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASR 155
                     + + +S+        +           L+   E  LK             
Sbjct: 180 YARFTSRVNAIGQSMSE--AARRIFKKDDIAEQAWDRLQNEIEGALKDAEFW------EN 231

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
            G+    Y   ++ M+    F              L           + R + K  R   
Sbjct: 232 LGVGAFHYLQDVMLMLFYTLFLL------------LPRRELSFSRSLVVRRIRKATRRFV 279

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHV--ALGVITAIMAMIPGGAPIS--FTAVSIYLLI 271
             M  IA+   L++G    L  +P  +  A+ +++  +  IP    I      + I +L+
Sbjct: 280 SIMVQIAMVRALLVGVLLGLCRMPWPLAIAIAIVSFWLFFIPTLGSIIASILPLPIIVLL 339

Query: 272 KGNIFN--ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
                N  A  +F+   +  F+V   + P +    + L  +   F LV      G  G
Sbjct: 340 PDMTANQRAAGVFI-PNLVSFLVGDLIGPVVYRKGLDLNEVTVLFALVFWYSVWGAPG 396


>gi|218442097|ref|YP_002380426.1| hypothetical protein PCC7424_5210 [Cyanothece sp. PCC 7424]
 gi|218174825|gb|ACK73558.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7424]
          Length = 345

 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 28/263 (10%), Positives = 76/263 (28%), Gaps = 12/263 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           + ++   L   + ++     + +ALI+      +            +   +I+   +   
Sbjct: 9   FTLLIFSLYIFWEIRQLILLLFTALILAEALSILVLKLQE-FGLKRSQSLLISVGFLFAF 67

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            I     +    + +++ELV  V       I   + +     G        + L     L
Sbjct: 68  IIGAFWLIIPPFIQQIEELVKLVPAGIAQLITTLQEI-----GTQFDPELIQALPTFNEL 122

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
               +  +       I           L   LS++ ++        +     Q       
Sbjct: 123 IGQLQPLINQ-----IANRGLNIFYTSLGMILSLVLLLALTLMLLANPTPYRQGFIRFFP 177

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
             +     +I     + +    + +    I   L+      + G+P   +  +++  +  
Sbjct: 178 SFYRERVDRILVQCDQTLTRWLIVIMAHMIIMTLLSWIGLLIFGIPLAFSQALLSGALTF 237

Query: 254 IP-GGAPISFTAVSIYLLIKGNI 275
           IP  G  ++        L++ + 
Sbjct: 238 IPNLGPVLAMIPPIAIALLEASW 260


>gi|218513737|ref|ZP_03510577.1| hypothetical protein Retl8_08448 [Rhizobium etli 8C-3]
          Length = 104

 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 25/66 (37%)

Query: 15 MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
          +I      +L  +  F   V+ + I+    +PI+ +            AV+  V  + L 
Sbjct: 3  IIGLFAYWTLVLIAPFALIVIWSAILAVALFPIFEALSRLIGNRPVIAAVVIVVFSLVLI 62

Query: 75 IVPLLF 80
          I PL  
Sbjct: 63 IAPLAL 68


>gi|167957255|ref|ZP_02544329.1| hypothetical protein cdiviTM7_01202 [candidate division TM7
           single-cell isolate TM7c]
          Length = 169

 Score = 41.4 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 48/122 (39%), Gaps = 2/122 (1%)

Query: 227 LVLGSAYWLAGVPSHVAL--GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLW 284
            V     ++ G P ++AL    I  ++++IP         +   +L+  ++  A    ++
Sbjct: 21  FVAIIPVFIQGAPGNLALPVAAIAFLLSLIPMFGATIAGVLITLMLLLSSVPAAVTFVIY 80

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             +   I +  + P +    I+L  L     +  G    GL+G  I   +     ++ ++
Sbjct: 81  FVVYQQIENNFISPVIQAKTIQLSALVVLLSVTLGTYIFGLIGGLISIPIAGWAKILLED 140

Query: 345 SI 346
            +
Sbjct: 141 YL 142


>gi|167945677|ref|ZP_02532751.1| hypothetical protein Epers_03715 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 239

 Score = 41.4 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 68/204 (33%), Gaps = 14/204 (6%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM-LEM 89
            APVL++L+I +    + S F  +      F AVI       LF+  +L      +  ++
Sbjct: 25  LAPVLASLVIAYLLEGVVSQFERRACPR--FPAVILVFICFLLFVALILLGLMPLLSRQV 82

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
            EL+ +       G  V   L  +P          +       +      F +      +
Sbjct: 83  TELIQQFPAMLSSGQQV---LLQLPERYPEILSEAQIKQIISGIHAEIGAFGQQVLSWSL 139

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG---EHLFPAYWKKISRI 206
               S      +   + +I M + +FFF +D   I   ++             W  + R 
Sbjct: 140 ASVVS-----LITLAVYLILMPLLVFFFLKDKSLILGWINQFFPKHRRFADTVWSDVDRQ 194

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLG 230
           +   +R  F  + I+     +V  
Sbjct: 195 IGNYVRGKFWEIIIVWAASFVVFS 218


>gi|71651477|ref|XP_814416.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70879385|gb|EAN92565.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 687

 Score = 41.4 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 80/229 (34%), Gaps = 32/229 (13%)

Query: 148 FIPRFASRFGMIFLDYC----LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           F+ +     G   +        +++F+ +  +F   +   +   +  +   + P   +K 
Sbjct: 438 FLTQLLFGLGSNMMGLFDSVYATMLFVCVLRYFLQLEHTILYYGVAKMLRVIHPQGGEKH 497

Query: 204 SRIVPKVI----RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
           +R++ + I    R+       ++     +    +     P+    G+I+++ A+ P   P
Sbjct: 498 ARMIEREITVSFRTLLQSFWHLSWFHFCITFCLFNAWSFPTPFFCGMISSLTAVFPL-TP 556

Query: 260 ISFTAVSIYL--------LIKGNIFNATCLFLWGAIELFIVD---------------KTL 296
             F+ V+  L           G +  A    +W     F+                   L
Sbjct: 557 KWFSPVAFALGSVFFNAVASDGFLGAAVDQRVWSCFLAFLASYADEWLLCVSRGLRGNPL 616

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           + F      +LP       LV G  T G+ G+ +GP+ + +  V++   
Sbjct: 617 KDFTGVKREQLPTFVVGTALVLGYVTYGVRGILLGPMTVIVAKVLFDNW 665


>gi|71410556|ref|XP_807567.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70871596|gb|EAN85716.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 687

 Score = 41.0 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 80/229 (34%), Gaps = 32/229 (13%)

Query: 148 FIPRFASRFGMIFLDYC----LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           F+ +     G   +        +++F+ +  +F   +   +   +  +   + P   +K 
Sbjct: 438 FLTQLLFGLGSNMMGLFDSVYATMLFVCVLRYFLQLEHTILYYGVAKMLRVIHPQGGEKH 497

Query: 204 SRIVPKVI----RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
           +R++ + I    R+       ++     +    +     P+    G+I+++ A+ P   P
Sbjct: 498 ARMIEREITVSFRTLLQSFWHLSWFHFCITFCLFNAWSFPTPFFCGMISSLTAVFPL-TP 556

Query: 260 ISFTAVSIYL--------LIKGNIFNATCLFLWGAIELFIVD---------------KTL 296
             F+ V+  L           G +  A    +W     F+                   L
Sbjct: 557 KWFSPVAFALGSVFFNAVASDGFLGAAVDQRVWSCFLAFLASYADEWLLCVSRGLRGNPL 616

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           + F      +LP       LV G  T G+ G+ +GP+ + +  V++   
Sbjct: 617 KDFTGVKREQLPTFVVGTALVLGYVTYGVRGILLGPMTVIVAKVLFDNW 665


>gi|323450354|gb|EGB06236.1| hypothetical protein AURANDRAFT_72040 [Aureococcus anophagefferens]
          Length = 3198

 Score = 41.0 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 71/229 (31%), Gaps = 27/229 (11%)

Query: 28   KGFFAPVLSALIIGFTSWPIYSSFI-----SKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
              + A    A ++    +  Y          +K+      AV  ++ +  +FI P++ L 
Sbjct: 2627 APYIAA--WAGVLCVVLYCFYYLLTTGSQFGRKKTRLWLEAVTFSLVLYFVFIKPIVVLL 2684

Query: 83   YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM--------WASELWTKHLSHPQSLK 134
               ++     V+  V   +  +  PR+  + P           W  EL    L+   + +
Sbjct: 2685 ISVIM--PSFVASSVDKARSPLDHPRYPFETPLPESSVFYLLRWHPELAGTRLADHVAAE 2742

Query: 135  ILSETFLKTNGIDFIPRFASRFGMIFLD-YCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                     +G+    R A   G         +++  +IAL F       +   L     
Sbjct: 2743 ATGAPRSARDGLTD-ARVAEIHGAAIPRTSGTAVVLALIALLFGLH--EDLQDTLIEEVF 2799

Query: 194  HLFPAYWKKISRIVPKVIRS-----TFLGMTIIAIGEGLVLGSAYWLAG 237
               P     ++   P +  +        GM ++      V   AY   G
Sbjct: 2800 TFLPLASGFVAERTPGLESAGEDVGAAFGMVVVGALV-YVAWKAYHACG 2847


>gi|270619979|ref|ZP_06221844.1| conserved hypothetical protein [Haemophilus influenzae HK1212]
 gi|270317790|gb|EFA29161.1| conserved hypothetical protein [Haemophilus influenzae HK1212]
          Length = 136

 Score = 41.0 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 2/127 (1%)

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNI 275
           G  +  +   L+    + + G+   + L     +  ++P  GA I    V++  L +  I
Sbjct: 3   GKLLEILIVTLITYIIFLIFGLNYPLLLAFAVGLSVLVPYIGAVIVTIPVALVALFQFGI 62

Query: 276 FNATCLFLWGAIELFIVD-KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
                  +       ++D   L P+L    + L  L     ++      G  G+F    L
Sbjct: 63  SPTFWYIIIAFAVSQLLDGNLLVPYLFSEAVNLHPLIIIISVLIFGGLWGFWGVFFAIPL 122

Query: 335 MALIAVI 341
             L+  +
Sbjct: 123 ATLVKAV 129


>gi|297516653|ref|ZP_06935039.1| putative inner membrane protein [Escherichia coli OP50]
          Length = 58

 Score = 41.0 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 26/42 (61%)

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           G++GG+   G++GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 2   GVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQP 43


>gi|114798684|ref|YP_761782.1| hypothetical protein HNE_3106 [Hyphomonas neptunium ATCC 15444]
 gi|114738858|gb|ABI76983.1| putative membrane protein [Hyphomonas neptunium ATCC 15444]
          Length = 362

 Score = 41.0 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 74/213 (34%), Gaps = 21/213 (9%)

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW-KKISRIVPK 209
           RF +            I+ ++I + F +      +Q+LD++          ++I      
Sbjct: 127 RFFANIANSVRGLSGDIVLILIYVAFLFTAQSMWTQKLDNIFPEADRREMVRRIGNDARL 186

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS-------- 261
            I       T+I+    L+   +    GV + + L  +  ++  IP    I         
Sbjct: 187 AIEKYLWTQTVISALITLLSYISLLALGVQNALFLSAVIFVLNYIPTVGSIVAALVPPLF 246

Query: 262 ---------FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
                    +      L +  +   A  +F   +   F +   ++P ++G  + L  L  
Sbjct: 247 ALVQPVIPGWVPA---LALDESYVYAVIVFAIVSFWQFSIGNFIQPRMMGDSLNLSALVV 303

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
              L       G+ G+F+   L  L+ +++ +S
Sbjct: 304 LLALAIWGVLWGIPGMFLSAPLTVLMMILFAQS 336


>gi|330818330|ref|YP_004362035.1| hypothetical protein bgla_1g34760 [Burkholderia gladioli BSR3]
 gi|327370723|gb|AEA62079.1| hypothetical protein bgla_1g34760 [Burkholderia gladioli BSR3]
          Length = 362

 Score = 41.0 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 89/274 (32%), Gaps = 10/274 (3%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +A V +  + +  L  L    +  ++  V  +       + +                  
Sbjct: 89  LAVVLLSVVIVGGLAGLTAAVIDHVEHTVPNLQGLMGQVMQLVDQ-----ARGRVPGWVA 143

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L    +   L  T L +  +D + +       IF      +I   +       D    
Sbjct: 144 NVLPVDAAQMKLKATGLMSKHMDQLQQGGKSAARIFGHVLFGMIIGAMIA--VGVDRNKA 201

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + L +       A+ +   RIV   I+ + +  T  AI   L+         +P    L
Sbjct: 202 RRPLSTALLARVGAFAEAFRRIVFAQIKISAINATFTAIY--LLAVLPVVHVKMPLAKTL 259

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            ++T I+ ++P    +    + + + +   +  A     +  I +  ++  L   ++GG 
Sbjct: 260 VLVTFIVGLLPVIGNLISNTLIVAVSLSVGVGTAIASLTF-LILIHKLEYFLNARIIGGQ 318

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           I+         ++      G+ G+   P+  A I
Sbjct: 319 IESRAWELLLAMLVMEAAFGVPGVIAAPIFYAYI 352


>gi|149925677|ref|ZP_01913941.1| hypothetical protein LMED105_05617 [Limnobacter sp. MED105]
 gi|149825794|gb|EDM85002.1| hypothetical protein LMED105_05617 [Limnobacter sp. MED105]
          Length = 360

 Score = 41.0 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 64/201 (31%), Gaps = 6/201 (2%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIA--LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
              +   FG       L  +F +I                    L +       +K  R 
Sbjct: 159 FVGYIRSFGGASFFIFLQFVFALILGVSAALMVPAPVAGGPAKPLADAWL-QTLEKYVRC 217

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGVITAIMAMIPGGAPISFTA 264
              ++ +             + +        V  P    L + TA+ ++IP    I    
Sbjct: 218 FTLLMGAQVYVSIWNTFCTAVFIYGILPAFDVVLPFRELLLMFTAVASLIPAAGNIMANT 277

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           + + L I+  +F A    L+    +  ++  +  +++G  ++         ++ G    G
Sbjct: 278 LILVLTIRYGVFVALGSVLY-LFIIHKLEYFVNGYIIGRNVRASVPEMLIAIILGEVAFG 336

Query: 325 LLGLFIGPVLMALIAVIWKES 345
           L GL   PV  A + + W+  
Sbjct: 337 LPGLITAPVTYAFLKMHWQRW 357


>gi|271499259|ref|YP_003332284.1| hypothetical protein Dd586_0686 [Dickeya dadantii Ech586]
 gi|270342814|gb|ACZ75579.1| conserved hypothetical protein [Dickeya dadantii Ech586]
          Length = 336

 Score = 41.0 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 111/319 (34%), Gaps = 17/319 (5%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F A  L   II   + P +   IS K      +AVI+T+ V  L ++    +        
Sbjct: 33  FIAGFLVYEIINLLT-PYFQKVISGKRARLAVVAVISTLVVCLLSVIFGSLVGLLMQEMK 91

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
              V    +A        + ++ +PG +  S    +H       K +    L+  G DF+
Sbjct: 92  DTSVFNARIAFILEDVQKQIMTYLPGYLPVSVEELQHEFVMWLQKHV--EMLQNMGKDFL 149

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
             F +    + L   +S+  +   +             L +   H           IV  
Sbjct: 150 HGFVTMLIGMILGAIISLYSIEPTV---------EKPLLKTELMHRVALLSSSFRNIVFA 200

Query: 210 VIRSTFLGMTIIAI-GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
            ++ + +   + A+   GL+ G    L   P    L  +T I  ++P    +   +V   
Sbjct: 201 QVKISLVNTVLSALFILGLLPGFGIHL---PFSKTLVALTFIFGLLPVIGNLISNSVVFI 257

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
             +  ++  A    ++  + +  ++  L   +VG  IK         ++      G+ G+
Sbjct: 258 AALSISLPIALLALVYLML-IHKLEYFLNAQIVGTRIKAHAWEILLAMLVFEAAFGISGV 316

Query: 329 FIGPVLMALIAVIWKESIM 347
              P+  A +    +E+ +
Sbjct: 317 IAAPIYYAYLKSELREAAL 335


>gi|322825976|gb|EFZ30781.1| hypothetical protein TCSYLVIO_2919 [Trypanosoma cruzi]
          Length = 687

 Score = 41.0 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 79/229 (34%), Gaps = 32/229 (13%)

Query: 148 FIPRFASRFGMIFLDYC----LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           F+ +     G   +        +++F+ +  +F   +   +      +   + P   +K 
Sbjct: 438 FLTQLLFGLGSNMMGLFDSVYATMLFVCVLRYFLQLEHTILYYGFAKMLRVIHPQGGEKH 497

Query: 204 SRIVPKVI----RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
           +R++ + I    R+       ++     +    +     P+    G+I+++ A+ P   P
Sbjct: 498 ARMIEREITVSFRTLLQSFWHLSWFHFCITFCLFNAWSFPTPFFCGMISSLTAVFPL-TP 556

Query: 260 ISFTAVSIYL--------LIKGNIFNATCLFLWGAIELFIVD---------------KTL 296
             F+ V+  L           G +  A    +W     F+                   L
Sbjct: 557 KWFSPVAFALGSVFFNAVASDGFLGAAVDQRVWSCFLAFLASYADEWLLCVSRGLRGNPL 616

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           + F      +LP       LV G  T G+ G+ +GP+ + +  V++   
Sbjct: 617 KDFTGVKREQLPTFVVGTALVLGYVTYGVRGILLGPMTVIVAKVLFDNW 665


>gi|149185995|ref|ZP_01864310.1| predicted permease [Erythrobacter sp. SD-21]
 gi|148830556|gb|EDL48992.1| predicted permease [Erythrobacter sp. SD-21]
          Length = 381

 Score = 41.0 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 78/290 (26%), Gaps = 8/290 (2%)

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +P        ++ +      +       I                       S   +++ 
Sbjct: 89  IPRSLRVAIVLVLVTAFFIWLGYLAGSQISQQAAQFPAIINEQLGRAIAFLQSKGFAIRT 148

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   +    +       G IF     +++ +II   +F  D     + +  +    
Sbjct: 149 ADIQSFAASVASGVGTVTRAIGGIFGGLT-TLVLIIIIGIYFAIDPRIYERGVAWMVPAK 207

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG-------VPSHVALGVIT 248
               +          +R    G  +    EG          G       VP    LG++T
Sbjct: 208 HRGAFYDTLSHQAYTLRRLMAGRLVGMAFEGFFTWVMLAFGGMLIGIDPVPMAALLGLLT 267

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++A IP    I    + + +   G             +        L P +    + L 
Sbjct: 268 GLLAFIPNIGAIISGVLMVLVGFSGGTDMGLYTIFVYFLVQNFDGYVLVPLIAKKTVDLA 327

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                   +      G+LGL +   L+A+I V  +      K   E +++
Sbjct: 328 PALVLSAQLIFGVLFGILGLALADPLLAMIKVALERRSALRKGEVEPVTA 377


>gi|297793069|ref|XP_002864419.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297310254|gb|EFH40678.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 301

 Score = 40.6 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 56/151 (37%), Gaps = 7/151 (4%)

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSIY 268
            I    L    IA  +G +    + L  +       V+  I A++P      +    ++ 
Sbjct: 155 AISDVLLATAKIAFFQGCLTWLLFRLYTIHFLYMSTVLAFISALLPIFPYWFATIPAALQ 214

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM--GLL 326
           ++++G    A  L +   + +      ++  + G         T   ++GGV      L 
Sbjct: 215 VVLEGRYIVAVTLSVTHLVLMEYGASEIQDDIPGSNA----YITGLSIIGGVTLFPSALE 270

Query: 327 GLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           G  IGP++  ++  +       +  + +KIS
Sbjct: 271 GAIIGPLITTVVIALKDLYAEFVLNDPKKIS 301


>gi|168184634|ref|ZP_02619298.1| putative membrane protein [Clostridium botulinum Bf]
 gi|237795863|ref|YP_002863415.1| hypothetical protein CLJ_B2652 [Clostridium botulinum Ba4 str. 657]
 gi|182672278|gb|EDT84239.1| putative membrane protein [Clostridium botulinum Bf]
 gi|229262364|gb|ACQ53397.1| putative membrane protein [Clostridium botulinum Ba4 str. 657]
          Length = 326

 Score = 40.6 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 49/294 (16%), Positives = 108/294 (36%), Gaps = 21/294 (7%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +F P    L++ F   PIY    +K   +++  ++I+ + V        L LF    L  
Sbjct: 31  YFKPFFIILVLLFLCNPIYDFLCNKNIFNNSVNSIISIILVN-------LILFLLIFLIG 83

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             + + ++L   +       +    G +       KH+ +     I +         DF 
Sbjct: 84  NFIYNNLILLKGYYYNFKTEIDCFIGDINKMLNMNKHIFNKNLNNIDTTLLNG----DFF 139

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
            + AS        Y        ++++F   D ++I   L+++ +++    ++KI   + K
Sbjct: 140 RKGASYTTEWLFAY----FIASLSIYFILVDKYAI---LENIEKYIGSNEFEKIRDKIYK 192

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIY 268
            ++        + I   L       +  + +++ LGV+  I+ M+P  G  + F  + +Y
Sbjct: 193 -LKEIIKIECCLIIFTTLQTIIGLKILNINNYLMLGVLCGILDMLPYIGTVVIFLPLILY 251

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
                N      L     + +    + L    +   ++LP L     +  G + 
Sbjct: 252 QFYTKNYIIFLGLICLYLLLIIT-RQILETKFMSSKLQLPALAIIISIYIGFKI 304


>gi|86171039|ref|XP_966135.1| conserved Plasmodium membrane protein, unknown function [Plasmodium
           falciparum 3D7]
 gi|46361100|emb|CAG25387.1| conserved Plasmodium membrane protein, unknown function [Plasmodium
           falciparum 3D7]
          Length = 1096

 Score = 40.6 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 61/186 (32%), Gaps = 4/186 (2%)

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
           D  +  +    AL++      S+   L  +   + P+        +   +++  +     
Sbjct: 720 DAIVQAVIFFTALYYLISSKKSVLNYLKDVLLVVDPSSI--FFYNITNNLKAIIICTLKR 777

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL 281
                L +   +     P      ++  I+++IP  +P     V I  L          L
Sbjct: 778 IYFYTLYIWLIFSFFQFPIIYVPTLLCIILSLIPVISPEILILVIILHLWIIKKQKIISL 837

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L+  I  F +       +               L   + T G  GL +GP++ ++  ++
Sbjct: 838 ILF--IVNFFIYCYFSTSIYNEIPHTHAWLVSLSLFLSISTFGSKGLILGPLIGSIPLIL 895

Query: 342 WKESIM 347
            + +I 
Sbjct: 896 HQVAIH 901



 Score = 36.0 bits (82), Expect = 9.7,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 7/39 (17%)

Query: 14 WMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIY 48
          ++I  ++++ +Y     LK +F  +  A II     P++
Sbjct: 22 YLIGIVLILCVYYNYIILKYYFYSLFWAFIISI---PLH 57


>gi|17548632|ref|NP_521972.1| hypothetical protein RS00868 [Ralstonia solanacearum GMI1000]
 gi|17430880|emb|CAD17562.1| putative permease transmembrane protein [Ralstonia solanacearum
           GMI1000]
          Length = 341

 Score = 40.6 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 46/326 (14%), Positives = 104/326 (31%), Gaps = 20/326 (6%)

Query: 22  VSLYFLKGFFAPVLS-----ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
            S   +    A VL      A I GF  + +     ++            +++V+ +F++
Sbjct: 16  ASYVLVAAMIAAVLWLHLLSAAIAGFLVYALARRLEARLHARRVLSQRAKSIAVIGVFLI 75

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
               +     L +  LV      +   + +   L  +   +  +            L+  
Sbjct: 76  -AALILGGIGLGIGRLVEHGHGLDGMLLRIADVLDHLRDSLPPT-FADYVPQSVSELRAR 133

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG---FSISQQLDSLGE 193
               LK +G     R  S  G+  L      +  +I             + S+ L +   
Sbjct: 134 LVEMLKEHG-----RQVSTLGIDGLRASAMALVGLILGAMVAWSEAPDPAGSKPLSAALL 188

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAI-GEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                       +V   ++ + L   + AI   G++         VP   +L ++T +  
Sbjct: 189 RRLGRLETAFEAVVFAQVKISALNTVLAAIYLMGVLPALGLH---VPYSKSLVLLTFVAG 245

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +IP    +      + + +  ++  A     +  + +  ++  +   ++G  I       
Sbjct: 246 LIPVAGNLISNTAIVLMSVAVSLELALASLAF-LVIVHKLEYFVNARIIGSRIDARAWEL 304

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALI 338
              L+      G+ G+   PVL A +
Sbjct: 305 ILALIVMEALFGVGGVIAAPVLYAYL 330


>gi|189351521|ref|YP_001947149.1| putative permease [Burkholderia multivorans ATCC 17616]
 gi|221200008|ref|ZP_03573051.1| putative membrane protein [Burkholderia multivorans CGD2M]
 gi|221206837|ref|ZP_03579849.1| putative membrane protein [Burkholderia multivorans CGD2]
 gi|189335543|dbj|BAG44613.1| putative permease [Burkholderia multivorans ATCC 17616]
 gi|221173492|gb|EEE05927.1| putative membrane protein [Burkholderia multivorans CGD2]
 gi|221180247|gb|EEE12651.1| putative membrane protein [Burkholderia multivorans CGD2M]
          Length = 361

 Score = 40.6 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 85/276 (30%), Gaps = 14/276 (5%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +A V +    +  L  L    +   +  V  +       + +    +      W + +  
Sbjct: 88  VAVVLLAIAIVGALTGLSIAVVEHFEHTVPNLQALLGQLMQIVEQ-TRARTPAWIANVLP 146

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +   ++   +  T             A  FG +     +  +  I             
Sbjct: 147 VDVEQMKAKAAVLMTAHMDQLQQSGKNVARGFGHVLFGMIIGAMIAI----------GVE 196

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VPSHV 242
             ++             + +    +++ +      I A   GL L  A  +    +P   
Sbjct: 197 HGKVRRPLSTALVTRVSRFADAFRRIVFAQIKISAINAAFTGLYLLVALPIFHERLPLSK 256

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L ++T I+ ++P    +    + + + +  ++  A     +  + +  ++  L   ++G
Sbjct: 257 TLVLLTFIVGLLPVIGNLVSNTLIVAVSLSVSMGTAIASLAF-LVIIHKLEYFLNAKIIG 315

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           G I+         ++      GL G+   P+  A I
Sbjct: 316 GQIESRAWELLLAMLIMEAAFGLPGIIAAPIFYAYI 351


>gi|161523715|ref|YP_001578727.1| putative transporter [Burkholderia multivorans ATCC 17616]
 gi|160341144|gb|ABX14230.1| putative transporter [Burkholderia multivorans ATCC 17616]
          Length = 363

 Score = 40.6 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 85/276 (30%), Gaps = 14/276 (5%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +A V +    +  L  L    +   +  V  +       + +    +      W + +  
Sbjct: 90  VAVVLLAIAIVGALTGLSIAVVEHFEHTVPNLQALLGQLMQIVEQ-TRARTPAWIANVLP 148

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +   ++   +  T             A  FG +     +  +  I             
Sbjct: 149 VDVEQMKAKAAVLMTAHMDQLQQSGKNVARGFGHVLFGMIIGAMIAI----------GVE 198

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VPSHV 242
             ++             + +    +++ +      I A   GL L  A  +    +P   
Sbjct: 199 HGKVRRPLSTALVTRVSRFADAFRRIVFAQIKISAINAAFTGLYLLVALPIFHERLPLSK 258

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L ++T I+ ++P    +    + + + +  ++  A     +  + +  ++  L   ++G
Sbjct: 259 TLVLLTFIVGLLPVIGNLVSNTLIVAVSLSVSMGTAIASLAF-LVIIHKLEYFLNAKIIG 317

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           G I+         ++      GL G+   P+  A I
Sbjct: 318 GQIESRAWELLLAMLIMEAAFGLPGIIAAPIFYAYI 353


>gi|319792301|ref|YP_004153941.1| hypothetical protein Varpa_1620 [Variovorax paradoxus EPS]
 gi|315594764|gb|ADU35830.1| hypothetical protein Varpa_1620 [Variovorax paradoxus EPS]
          Length = 361

 Score = 40.6 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 44/334 (13%), Positives = 108/334 (32%), Gaps = 11/334 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES----STFLAV 64
           +G+M    + ++   +  +     P L  + IGF     ++  + K         +  A 
Sbjct: 25  RGVMLASYLLMLGALMLVMWEHLLPGLICVCIGFLLTRWFARLLEKGLLRIPAMRSSAAG 84

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            A V  + + ++    L   G+ + +E +       +  +                ++ T
Sbjct: 85  WAGVLAVIVVLLAPAALVTLGLSQAREYIVDAPDQYRELLDYTARTVLELRSKLPPDIAT 144

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                   ++ +   +L+           +    +   Y   I+  + A+         +
Sbjct: 145 YLPEGAAEIQRVIANYLRAQAGSLAMAGRAWLHGLLFSYVGLIVGSLAAVAAAPLRRKPL 204

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           ++QL    E     + +  ++IV            + AI   L+     W A +P   AL
Sbjct: 205 AEQLHQRVE----TFGEAFAQIVAAQFWIAAFNTLLTAIF--LLFLMPLWGAHLPYTPAL 258

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
             +T +  ++P    +   +V   + +  +   A    ++  I +   +  +   +VG  
Sbjct: 259 ITLTFLAGLVPIVGNLVCNSVITLVGLSVSPVTAAACLIF-LIVIHKAEYVINAKVVGAR 317

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
            ++        +       G  GL   P+  A +
Sbjct: 318 TQMSVWELLAVMFVAEAVFGPAGLVAAPLYYAYL 351


>gi|170761211|ref|YP_001787738.1| hypothetical protein CLK_1803 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408200|gb|ACA56611.1| putative membrane protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 326

 Score = 40.6 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 116/295 (39%), Gaps = 23/295 (7%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +F P    L++ F   PIY    +K   +++  + I ++ ++ L +  L+FL    +   
Sbjct: 31  YFKPFFIILVLLFLCNPIYDFLCNKNIFNNSVNS-IISIILVNLILFLLIFLIGNFIYNN 89

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWAS-ELWTKHLSHPQSLKILSETFLKTNGIDF 148
             L+       +  I    ++ DI   +  +  ++ K+L++  +  +           DF
Sbjct: 90  LILLKGYYYNFKTEIDC--FIGDINKMLNMNKHIFNKNLNNIDTTLLN---------GDF 138

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
             + AS     F  Y        ++++F   D ++I   L+++ +++    ++KI   + 
Sbjct: 139 FRKGASYTTEWFFAY----FIASLSIYFILVDKYAI---LENIEKYIGSNEFEKIRDKIY 191

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
           K ++        + I   L       +  + + + LGV+  I+ M+P  G  + F  + +
Sbjct: 192 K-LKEIIKIECFLVIFTTLQTIIGLKILNINNCLMLGVLCGILDMLPYIGTVVIFLPLIL 250

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
           Y     N      L     + + I  + L    +   ++LP L     +  G + 
Sbjct: 251 YQFYTKNYIIFLGLICLYLLLV-ITRQILETKFMSSKLQLPALVIIISIYIGFKI 304


>gi|85703005|ref|ZP_01034109.1| hypothetical protein ROS217_19727 [Roseovarius sp. 217]
 gi|85671933|gb|EAQ26790.1| hypothetical protein ROS217_19727 [Roseovarius sp. 217]
          Length = 351

 Score = 40.6 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 84/217 (38%), Gaps = 11/217 (5%)

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
           P + K +       +   ++   A + G       L    +++ LF  +     I     
Sbjct: 107 PDAEKAVFNAVATLDVAGYLRTLAGQAGG------LMQATVLVILFVGFLFAERIWFTTK 160

Query: 190 SLGEHLFPAYWKKISRIVPKVIRST---FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
                      +++ RIV  +I       L  T++++  GL++        +    ALG+
Sbjct: 161 LESLFGDAKQAERVGRIVSSIIHRVNYYLLVKTLVSVVTGLMVYGVARYFALDLAGALGI 220

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           +T ++  IP  G+ ++   V++   ++  +   A  +FL   I  F+    + P L+G  
Sbjct: 221 LTFVLNYIPSIGSIVATVLVALVAYVQLADGTLALVIFLIVGIIQFLNGNIIDPMLMGRA 280

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +++        L       G+ G+F+   +M  + ++
Sbjct: 281 LRVSSFGIIISLAFWAAVWGIPGMFLAVPIMVALMIV 317


>gi|323978261|gb|EGB73347.1| TqsA transporter [Escherichia coli TW10509]
          Length = 269

 Score = 40.6 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 82/265 (30%), Gaps = 22/265 (8%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + A+ I     P+    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILAIFIAVILNPLVQHMVRWRVPRVLAVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ VM + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQAIEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 126 HYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKFQQMMAR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSI 267
            G++   +  IP  G+ ++   +S+
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPLSL 250


>gi|148380383|ref|YP_001254924.1| membrane protein [Clostridium botulinum A str. ATCC 3502]
 gi|153933187|ref|YP_001384602.1| hypothetical protein CLB_2291 [Clostridium botulinum A str. ATCC
           19397]
 gi|153937361|ref|YP_001388118.1| hypothetical protein CLC_2274 [Clostridium botulinum A str. Hall]
 gi|148289867|emb|CAL83975.1| putative membrane protein [Clostridium botulinum A str. ATCC 3502]
 gi|152929231|gb|ABS34731.1| putative membrane protein [Clostridium botulinum A str. ATCC 19397]
 gi|152933275|gb|ABS38774.1| putative membrane protein [Clostridium botulinum A str. Hall]
          Length = 326

 Score = 40.6 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 114/295 (38%), Gaps = 23/295 (7%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +F P    L++ F   PIY    +K   +++  ++I+ + V  +  + L+FL    +   
Sbjct: 31  YFKPFFIILVLLFLCNPIYDFLCNKNIFNNSVNSIISIILVNIILFL-LIFLVGNFIYNN 89

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWAS-ELWTKHLSHPQSLKILSETFLKTNGIDF 148
             L+       +  I    ++ DI   +  +  ++ K+L++  +  +  + F K      
Sbjct: 90  LILLKGYYHNFKTEIDC--FIGDINKMLNMNKHIFNKNLNNVDATLLNVDFFRKGA---- 143

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
                        ++  +     ++++F   D + I   L+++ +++    ++KI   + 
Sbjct: 144 ---------SYTTEWIFAYFIASLSIYFILVDKYVI---LENIKKYIGSNEFEKIKDKIY 191

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
           K ++        + I   L       +  + +++ LGV+  I+ ++P  G  + F  + +
Sbjct: 192 K-LKEIIKIECFLVIFTTLQTIIGLKILNINNYLMLGVLCGILDILPYIGTVVIFLPLIL 250

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
           Y     N      L     + +    + L    +   ++LP L     +  G + 
Sbjct: 251 YQFYTKNYIIFLGLICLYLLLIIT-RQILETKFMSSKLQLPALAIIISIYIGFKI 304


>gi|87302777|ref|ZP_01085588.1| hypothetical protein WH5701_13530 [Synechococcus sp. WH 5701]
 gi|87282660|gb|EAQ74618.1| hypothetical protein WH5701_13530 [Synechococcus sp. WH 5701]
          Length = 357

 Score = 40.6 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 96/291 (32%), Gaps = 17/291 (5%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           + +A+++      +      +   S      I+  +V  + +V  + L    + +  EL+
Sbjct: 29  LFAAVVLAMAICTLVGVVRGRLGCSRPLALTISLGAVALVVVVGGVVLIPPFVEQFAELL 88

Query: 94  SKVVLANQHGIPVPRWLSD-----IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           +K+  A    I + R +       + G    S  W + L                 G   
Sbjct: 89  AKLPDAADVLIALARRVLANVSRVLYGRHDGSLEWLQQLWPASGPSPDVLAGGLGGGALR 148

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK----IS 204
           +   AS  G   L     +   ++                  +   L P+++++    + 
Sbjct: 149 LLGLASNLGSGTLQLVFVLAVSLMLA--------VQPTAYRDVLVLLAPSFYRRRLRQVL 200

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            +    +    +G+ I ++   L+ G    L GV   VA  ++  ++ +IP   P   T 
Sbjct: 201 DLCGAALSDWMVGVAISSVCVALLAGVGLSLLGVKLVVANALLAGLLNVIPNVGPTLSTI 260

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
             + + +    + A  +     +   +    + P ++   ++L    T   
Sbjct: 261 FPMSVALLDAPWKALAVLGLYVVVQHLESYVITPSVMHAKLRLLPGLTLTA 311


>gi|212696937|ref|ZP_03305065.1| hypothetical protein ANHYDRO_01500 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676025|gb|EEB35632.1| hypothetical protein ANHYDRO_01500 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 170

 Score = 40.6 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 64/148 (43%), Gaps = 3/148 (2%)

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG- 256
            + KK  +     ++     + I +I   +VL     +  +   + + ++ A++ ++P  
Sbjct: 4   EFLKKYLKEAGLGLKDLLRALIISSIINFVVLAIGLGILKIKYFILIALLIALVDLLPVL 63

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL-PFLPTFFG 315
           GA +     +I  +  GN+     L +  A+  FI+ + + P ++G  I L PFL     
Sbjct: 64  GAGMVMIPWAIIEIFMGNMKLGFSLGILFAL-TFIIKQVIEPIILGRSIGLNPFLTILIS 122

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +   V     LG  +GPV+  +I    +
Sbjct: 123 VSFMVFLSPGLGALVGPVVSMMIGTFLE 150


>gi|284800166|ref|ZP_05985853.2| putative membrane protein [Neisseria subflava NJ9703]
 gi|284795757|gb|EFC51104.1| putative membrane protein [Neisseria subflava NJ9703]
          Length = 337

 Score = 40.6 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 48/339 (14%), Positives = 104/339 (30%), Gaps = 35/339 (10%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTS---------------WPIYSSFISKKEESSTFLAVI 65
           L  L  L   F P+L ++I+ +                  P  +         +  L   
Sbjct: 3   LALLIVLHYHFLPLLLSVILTYIFITRTNGVILKLRRRVLPRNTRLHKSLNAHNINLIST 62

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
                +   I+ ++ L  Y ++                  +   L D             
Sbjct: 63  TLTLAIVFSIIAMMSLGIYHLIHGG-------HVGFMLAKLAAILEDTKNSQDLPAAILN 115

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L +  +    S   L       + R +      F+   + II   +  F        + 
Sbjct: 116 MLPNNMAEIKASAIKLIEEYRAALTRISKNSITSFVYILIGIIIGAMLSF------HRLE 169

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA------GVP 239
            + +     LF A   +            FL    I++ +  + G   +L        +P
Sbjct: 170 MRKNRHKMPLFKAELMRRIVNFETSFERVFLAQVKISLIDTFLTGLYLYLVLPLFGVDLP 229

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             + + +I  I+ +IP    +    + I L +  +++ A    ++  + +  ++  L   
Sbjct: 230 FKMTVLIIAFIVGLIPVAGNLISNTIIIILSLGASLYVALASLVF-LVVIHKLEYFLNAK 288

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           ++G  I+         +V   R  G+ G+ + PV  A +
Sbjct: 289 IIGSEIESSAWELLVAMVVFERIFGIGGIIVAPVYYAYL 327


>gi|1074317|pir||E64004 hypothetical protein HI0237 - Haemophilus influenzae (strain Rd
           KW20)
          Length = 218

 Score = 40.6 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 64/192 (33%), Gaps = 8/192 (4%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             + +PQ +    I+    +S+YF     AP+L AL++ +      +      +      
Sbjct: 11  RRLSDPQAMGLLAILLFGFISIYFFGDLIAPLLIALVLSYLLEIPINFLNQYLKCPRMLA 70

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++   S + L  V  L L      +   L+S +            WL ++P        
Sbjct: 71  TILIFGSFIGLAAVFFLVLVPMLWNQTISLLSDLPAMFNKS---NEWLLNLPKNYPELID 127

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           ++   S   S++     F ++     +        M  +   +    + + +FF  +D  
Sbjct: 128 YSMVDSIFNSVREKILGFGESAVKLSLASI-----MNLVSLGIYAFLVPLMMFFMLKDKS 182

Query: 183 SISQQLDSLGEH 194
            + Q +      
Sbjct: 183 ELLQGVSRFLPK 194


>gi|78067579|ref|YP_370348.1| putative transporter [Burkholderia sp. 383]
 gi|77968324|gb|ABB09704.1| putative transporter [Burkholderia sp. 383]
          Length = 361

 Score = 40.6 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 31/276 (11%), Positives = 86/276 (31%), Gaps = 14/276 (5%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +A V +  + +  L  L    +   +  V  +       + +    +      W + L  
Sbjct: 88  VAVVLLSIVIVGALTSLTIGIIEHFERTVPNLQSLLDQLMQIVEQ-TRARTPAWIANLLP 146

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +   ++   +                A  FG +     +  +  I             
Sbjct: 147 VDVEQMKTKAAVLMHSHMDQLQQSGKSVARGFGHVLFGMIIGAMIAI----------GVE 196

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VPSHV 242
             ++             + +    +++ +      I A+  G+ L  A  +    +P   
Sbjct: 197 HGKVRRPLSTALVTRVSRFADAFRRIVFAQIKISAINAVFTGIYLLVALPIFHQRLPLSK 256

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L ++T I+ ++P    +    + + + +  ++  A     +  + +  ++  L   ++G
Sbjct: 257 TLVLVTFIVGLLPVIGNLISNTLIVAVSLSVSMGTAIASLAF-LVIIHKLEYFLNAKIIG 315

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           G I+         ++      GL G+   P+  A +
Sbjct: 316 GQIESRAWELLLAMLIMEAAFGLPGVIAAPIFYAYL 351


>gi|168180693|ref|ZP_02615357.1| putative membrane protein [Clostridium botulinum NCTC 2916]
 gi|182668619|gb|EDT80598.1| putative membrane protein [Clostridium botulinum NCTC 2916]
          Length = 326

 Score = 40.6 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 114/295 (38%), Gaps = 23/295 (7%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +F P    L++ F   PIY    +K   +++  ++I+ + V  +  + L+FL    +   
Sbjct: 31  YFKPFFIILVLLFLCNPIYDFLCNKNIFNNSVNSIISIILVNIILFL-LIFLVGNFIYNN 89

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWAS-ELWTKHLSHPQSLKILSETFLKTNGIDF 148
             L+       +  I    ++ DI   +  +  ++ K+L++  +  +  + F K      
Sbjct: 90  LILLKGYYHNFKTEIDC--FIGDINKMLNMNKHIFNKNLNNVDATLLNVDFFRKGA---- 143

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
                        ++  +     ++++F   D + I   L+++ +++    ++KI   + 
Sbjct: 144 ---------SYTTEWIFAYFIASLSIYFILVDKYVI---LENIKKYIGSNEFEKIKDKIY 191

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
           K ++        + I   L       +  + +++ LGV+  I+ ++P  G  + F  + +
Sbjct: 192 K-LKEIIKIECFLVIFTTLQTIIGLKILNINNYLMLGVLCGILDILPYIGTVVIFLPLIL 250

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
           Y     N      L     + +    + L    +   ++LP L     +  G + 
Sbjct: 251 YQFYTKNYIIFLGLICLYLLLIIT-RQILETKFMSSKLQLPALAIIISIYIGFKI 304


>gi|15643943|ref|NP_228992.1| hypothetical protein TM1187 [Thermotoga maritima MSB8]
 gi|8928512|sp|Q9X0R9|Y1187_THEMA RecName: Full=UPF0118 membrane protein TM_1187
 gi|4981737|gb|AAD36262.1|AE001775_5 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 324

 Score = 40.2 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 38/324 (11%), Positives = 98/324 (30%), Gaps = 25/324 (7%)

Query: 27  LKGF-FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           L  F    ++  L +      +        ++      VI+ V V        +  F   
Sbjct: 23  LSPFIITALIMGLYLSIIIDYVARFLEVFIKKPRVLPRVISNVLVFLTIAYSAVNFFPVI 82

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + E +++ S++             +      +      +  LS   +        L    
Sbjct: 83  VREAQKVFSEI-----------DRIRSGLENIDIPGWLSSILSSISASFSEGALSLVNKI 131

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           + ++P F            ++   +I+   F       + ++         P+  K+  +
Sbjct: 132 VGYVPSF------------ITAAILIVITAFIVSSLKRLIKENVHYLFPTNPSDGKEFLK 179

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
                      G  ++AI  GL +G   ++  +PS   LG++  +   +P    +     
Sbjct: 180 TTYTEFERFVGGQVLVAIFVGLFVGFGAFIFKIPSAFFLGMLAFVTDFVPYLGVVISAIP 239

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDK-TLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            + L    +  +   +     +    ++   L P +    + + +      ++       
Sbjct: 240 LLMLAFSVHGLSGLLIGTIILVAANQLEMWVLAPKIQSNTLNVHWFIILIMILILGDLFS 299

Query: 325 LLGLFIGPVLMALIAVIWKESIMA 348
             G+ I    +  +   WK+ +M 
Sbjct: 300 FGGVLIALPFLIFLKNFWKQYVMG 323


>gi|170754604|ref|YP_001781970.1| hypothetical protein CLD_2213 [Clostridium botulinum B1 str. Okra]
 gi|169119816|gb|ACA43652.1| putative membrane protein [Clostridium botulinum B1 str. Okra]
          Length = 326

 Score = 40.2 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 114/295 (38%), Gaps = 23/295 (7%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +F P    L++ F   PIY    +K   +++  ++I+ + V  +  + L+FL    +   
Sbjct: 31  YFKPFFIILVLLFLCNPIYDFLCNKNIFNNSVNSIISIILVNIILFL-LIFLVGNFIYNN 89

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWAS-ELWTKHLSHPQSLKILSETFLKTNGIDF 148
             L+       +  I    ++ DI   +  +  ++ K+L++  +  +  + F K      
Sbjct: 90  LILLKGYYHNFKTEIDC--FIGDINKVLNMNKHIFNKNLNNVDATLLNVDFFRKGA---- 143

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
                        ++  +     ++++F   D + I   L+++ +++    ++KI   + 
Sbjct: 144 ---------SYTTEWIFAYFIASLSIYFILVDKYVI---LENIKKYIGSNEFEKIKDKIY 191

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
           K ++        + I   L       +  + +++ LGV+  I+ ++P  G  + F  + +
Sbjct: 192 K-LKEIIKIECFLVIFTTLQTIIGLKILNINNYLMLGVLCGILDILPYIGTVVIFLPLIL 250

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
           Y     N      L     + +    + L    +   ++LP L     +  G + 
Sbjct: 251 YQFYTKNYIIFLGLICLYLLLIIT-RQILETKFMSSKLQLPALAIIISIYIGFKI 304


>gi|331677461|ref|ZP_08378136.1| AI-2 transport protein TqsA (Transport of quorum-sensing
           signalprotein) [Escherichia coli H591]
 gi|331073921|gb|EGI45241.1| AI-2 transport protein TqsA (Transport of quorum-sensing
           signalprotein) [Escherichia coli H591]
          Length = 283

 Score = 40.2 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 82/265 (30%), Gaps = 22/265 (8%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           T+   + ++   ++ IIL  + F      P + AL I     P+    +  +      ++
Sbjct: 7   TLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVS 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ VM + ++ L +L        + L             +   L  +   +   +L 
Sbjct: 67  ILMTIIVMAMVLL-LAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLA 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                +     + +     +N +  I         + L+                     
Sbjct: 126 HYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQ 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   +     P       +     +    +  T I+I  GLV  +      V     
Sbjct: 168 LPGKFQQMMAR--PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFV 225

Query: 244 LGVITAIMAMIP-GGAPISFTAVSI 267
            G++   +  IP  G+ ++   +S+
Sbjct: 226 WGLLAFALNYIPNIGSVLAAIPLSL 250


>gi|83718800|ref|YP_441054.1| hypothetical protein BTH_I0497 [Burkholderia thailandensis E264]
 gi|83652625|gb|ABC36688.1| membrane protein, putative [Burkholderia thailandensis E264]
          Length = 344

 Score = 40.2 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 36/272 (13%), Positives = 84/272 (30%), Gaps = 10/272 (3%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +A V +    +  L  L    +   +  V          + +    +      W S L  
Sbjct: 71  VAVVLLSAAIVGGLAGLTIAVIEHFEHTVPNAQNLLGQVMQIVDQ-ARTRTPEWISNLLP 129

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                 ++                    A  FG +     +  +  I        D   +
Sbjct: 130 VDAEQMRAKATGLMNKHMDQLQQGGKSVARGFGHVLFGMIIGAMIAIGV------DRHKL 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            Q L +        +     RIV   I+ + L     A+   L++    +   +P    L
Sbjct: 184 RQPLSTALVARISRFSDSFRRIVFAQIKISALNAFFTALY--LLVALPIFHQRLPLSKTL 241

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            ++T I  ++P    +    + + + +  ++  A    ++  + +  ++  L   ++GG 
Sbjct: 242 VLVTFIAGLLPVVGNLISNTLIVAVSLSVSMGTAIASLVF-LVVIHKLEYFLNAKIIGGQ 300

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
           I+         ++      G+ G+   P+  A
Sbjct: 301 IESRAWELLLAMLVMEAAFGVPGVIAAPIFYA 332


>gi|213029844|ref|ZP_03344291.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 158

 Score = 40.2 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 1/111 (0%)

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNAT 279
           I+I  GLV         V      G++   +  IP  G+ ++     I +L+    ++A 
Sbjct: 17  ISIVTGLVAWGMLAALDVRFAFVWGLLAFALNYIPNIGSVLAALPPIIQVLVFNGFYDAL 76

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            +     +   +    L P ++G  + L  L  F  L+     +G +G+ +
Sbjct: 77  LVLAGYLLINLVFGNILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLL 127


>gi|293596839|ref|ZP_06684360.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|293582882|gb|EFF94914.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
          Length = 236

 Score = 40.2 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 35/252 (13%), Positives = 82/252 (32%), Gaps = 24/252 (9%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  ++ + LY L+     +L   I  F    + +  + +       +
Sbjct: 5   EKLKENDTARRVLVFVLLGIVLYLLRSMIDLILLTFIFAFLVTRLENVILKRVRVPRKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V     V ++      + ++ +LV  +V    +  P    +     G      
Sbjct: 65  VIVLYSLVAVFLYVAIVHFLPILINQISQLVDSLVKLYNN--PSDNTIVKWIVGFLKESN 122

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             K+L                 G+DFI    S  G + L + L++I  +    FF  +  
Sbjct: 123 IQKYLQ---------------AGVDFIIASLSGIGSVGLSFFLALILSL----FFSLEKE 163

Query: 183 SISQQLDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            ++              +K+     +              +IA+    +   A +L   P
Sbjct: 164 RVTSFTGQFMTSKVGFIFKEAAFFGKKFVSTFGVVLEAQLMIALVNTFITTIALYLMDFP 223

Query: 240 SHVALGVITAIM 251
             ++L ++  ++
Sbjct: 224 QLLSLSIMVFVL 235


>gi|163788636|ref|ZP_02183081.1| transporter, putative [Flavobacteriales bacterium ALC-1]
 gi|159875873|gb|EDP69932.1| transporter, putative [Flavobacteriales bacterium ALC-1]
          Length = 297

 Score = 40.2 bits (93), Expect = 0.50,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 95/294 (32%), Gaps = 18/294 (6%)

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
           +         VI+ + V+ L +  L        L  KE+++     ++        ++D+
Sbjct: 2   RWLGRRKVPKVISIIIVLLLAVGGLKLGIELVQLSSKEILA---TKSEFFPKAEEKIADL 58

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
              +             ++  I  E         F              +  S++  I  
Sbjct: 59  KVYLL------------ENFGIEFEQDKNVLAQLFQKENLGSTLGFLNSFLTSLLMTIFF 106

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           +  +  +  ++ + L++          K   +I   +I+       +++   GL  G   
Sbjct: 107 VVLWLAESINVHKLLNNTLLKQKHTSIKTFMKIEKDLIK-FIKVKVLVSALTGLFTGLMC 165

Query: 234 WLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGA-IELFI 291
               V   +  G+    +  +   G+ IS   +SI+  ++ +  +    F++   +    
Sbjct: 166 VFFDVSFPIFWGLFAFAINFVQMVGSFISVICLSIFAFVELDPTSTLFFFIFSISMVQVT 225

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
               L P  +G    +  +     L+      G+ GL +   +   I +I ++ 
Sbjct: 226 FGAILEPIFMGKSFSINVIAVLVMLMFWGFLWGIPGLIMAIPITVFIKIILEQF 279


>gi|149204834|ref|ZP_01881796.1| hypothetical protein RTM1035_03023 [Roseovarius sp. TM1035]
 gi|149141704|gb|EDM29759.1| hypothetical protein RTM1035_03023 [Roseovarius sp. TM1035]
          Length = 338

 Score = 40.2 bits (93), Expect = 0.50,   Method: Composition-based stats.
 Identities = 64/349 (18%), Positives = 118/349 (33%), Gaps = 24/349 (6%)

Query: 14  WMIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +I+  +++S   LK     FAP+  A++ G    P+   F       ST LA    + +
Sbjct: 2   AVIVIALILSFAALKIGGDIFAPMTLAIVTGVMLAPVTDVFERI--GFSTGLAASTVLIL 59

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
               I  L  L    + ++ E + ++    +  I                 L   +    
Sbjct: 60  GVSAIGILAILAEPVIWQIAEELPRIQYELRSIIAE--------FSNLIRGLQEINREVE 111

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY-RDGFSISQQLD 189
            +L               +P   S   M  L    +++F     FF   R G      L 
Sbjct: 112 AALGAAPTPAKDAGEGGSLPSITSALFMAPLVLAQALVFCGTLFFFLLTRKGMYAWLSLW 171

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                      ++ +    +++   FL ++ I  G G  LG A  L  +P      ++ A
Sbjct: 172 IGTPDDTADILRRFTN-AERLVARYFLAISSINAGLGAALGGALLLINLPGPFVWAMVAA 230

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR-----PFLVGGP 304
           ++  +    P++ TA     L+   I     L +     +F+    L      P LVG  
Sbjct: 231 LLNFVLYVGPMTVTAG----LLVAGIVAFDDLMVLAPPAIFLALNMLEAQFATPALVGRH 286

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           I +  L  F  LV  +   G +G  I   ++ +   +     +  + +K
Sbjct: 287 ISVNPLLIFVSLVFWLWLWGPIGGIIAIPVLVIALALLDIFAVDGEPDK 335


>gi|224532547|ref|ZP_03673170.1| membrane protein [Borrelia burgdorferi WI91-23]
 gi|224512490|gb|EEF82868.1| membrane protein [Borrelia burgdorferi WI91-23]
          Length = 341

 Score = 40.2 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 42/300 (14%), Positives = 98/300 (32%), Gaps = 27/300 (9%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           +  ++++GF  +P+Y+     K                    VP   + +     +    
Sbjct: 22  LAISIVLGFLVYPVYTFLARFK--------------------VPKFLIVFIIFFLLFSFS 61

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             +     + + V   +  +P          K +      K+ S      N   +I  F 
Sbjct: 62  YLIFSFVYYSVTVL--MKQLPYYQNQLAFIMKDVLSRY--KVDSSVINDVNFSGYIYPFL 117

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
           +R     + +  S++ + + L+F   +      +LD   +      +      +   I  
Sbjct: 118 TRAYNEIIGFTSSLVVVFLLLYFLLSEIHVFEMKLDKAFKKPISTRFIGALDTINNQIGK 177

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIK 272
                 +++   G+++     L G    +   V++ +   IP  G+ ++   + I  LI+
Sbjct: 178 YLGIKILVSCLTGILVFIGLTLFGQDFPLVWAVLSFVFNFIPSIGSILAVFFIVITSLIQ 237

Query: 273 GNIFNATCL--FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
                   L  F++      ++   L P + G  + +        L       G++GL I
Sbjct: 238 FYPNLNIVLYVFIYNTSIQMLIGNILEPKMQGKRLDISPFLLLCFLFFWGWLWGIVGLLI 297


>gi|289805567|ref|ZP_06536196.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 132

 Score = 40.2 bits (93), Expect = 0.52,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 38/94 (40%), Gaps = 1/94 (1%)

Query: 238 VPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           +   +  GV+  ++  +P  G+ IS     I  L+    +    +     +   ++   +
Sbjct: 3   IQFALMWGVLAFLLNYVPNIGSVISAVPPMIQALLFNGFYECVLVGALFLVVHMVIGNIM 62

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            P ++G  + +  L  F  L+     +G +G+ +
Sbjct: 63  EPRMMGHRLGMSTLVVFLSLLVWGWLLGPVGMLL 96


>gi|319935500|ref|ZP_08009935.1| hypothetical protein HMPREF9488_00766 [Coprobacillus sp. 29_1]
 gi|319809531|gb|EFW05948.1| hypothetical protein HMPREF9488_00766 [Coprobacillus sp. 29_1]
          Length = 343

 Score = 40.2 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 71/206 (34%), Gaps = 2/206 (0%)

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           HL        + +   +   ID++    + +    + +  +I+  +   F+   D   + 
Sbjct: 108 HLRLNPIFSTIFDFLQQYQVIDYLMGILNGWTQSVIYWVTNILLAMGISFYLSYDNMHLI 167

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           ++L             +  + +  +       + +  +   L+    ++       + + 
Sbjct: 168 EKLIVYLPFDKQGPCMQTLKRLKLLTYQFMKSLILDFLFFFLMCLIPFFFIDEDLFLWIA 227

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           +  +I  ++P  G  I    V IY  I  +       F+   +  ++    L+P+L    
Sbjct: 228 LFLSITNLVPYIGPYIGGIPVVIYEYIA-DPQMGYVAFIAVIVLQYLESSYLQPYLFSKC 286

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFI 330
           I+L  +  F  L       G++G+  
Sbjct: 287 IRLHPIALFIALTFFGDLFGIVGMIF 312


>gi|309361519|emb|CAP29333.2| hypothetical protein CBG_09778 [Caenorhabditis briggsae AF16]
          Length = 839

 Score = 40.2 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 70/234 (29%), Gaps = 34/234 (14%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYR-------------DGFSISQQLDSLGEHL 195
                  FGM  L+  + +I  +  +++                D  +++   +++    
Sbjct: 593 FAGIILSFGMELLNTFIELIVFLTMVYYLLSASRTRWLPLQWASDLSAVTANDETINRTR 652

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
               ++             F+    +A+  GL     + L  +       +   + A IP
Sbjct: 653 HFVSFRSYPFTFIFFSSGVFILSAKMAVFYGLYTYFVHSLFDLNIVFVPSMAATLFAAIP 712

Query: 256 GGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
              P       I  L   +G    A    L     +   D T    + G         T 
Sbjct: 713 IMPPYIVAIFGIVELWLVRGEGAAALVFTLASFAPVMFADATFYKEVKGS----HPYVTG 768

Query: 314 FGLVGGVRTMG---------------LLGLFIGPVLMALIAVIWKESIMAIKEN 352
             ++GG+  +G                 G  IGP+++ L  V+    +  +K +
Sbjct: 769 LAIIGGMYWLGLQVYYARKSKKATLNFQGAIIGPIILCLCLVLVNVYLQHVKPS 822


>gi|318041303|ref|ZP_07973259.1| permease [Synechococcus sp. CB0101]
          Length = 333

 Score = 39.8 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 38/303 (12%), Positives = 98/303 (32%), Gaps = 17/303 (5%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + L+     +  A+++        S        +      +  + +       LL  +  
Sbjct: 20  WELRWVLLVLFGAVVLAVALDVPVSWLRRFTPMNRPQALTVVVLLL-------LLGGWQL 72

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
           G + + EL+ +V    Q    +   + ++ GG+          +  +SL+         +
Sbjct: 73  GEVLLPELIEQVQQFTQLVPALLNRVGELLGGV----------AMLESLEGRVAELATFD 122

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            +  +      F     +  + ++ M++       D  S  + + +     +     ++ 
Sbjct: 123 KLQPLGGQLLGFAGGAANGTIQLLLMVLLALLLVLDPRSHQRLVVAATPAHYRGMAGELL 182

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
               + +     GMTI A    L+  +      VP  +  G++  ++  +P   P   T 
Sbjct: 183 SACRQALGGWLAGMTISASAVFLLTWAGLAALKVPLALLSGLVCGLLTFVPTIGPTVATL 242

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           + + + +  +   A  + +   +        L P L+   + L         +     +G
Sbjct: 243 LPLAVALLVSPALALQVLILRLVLQNAEAFLLTPLLLSRTVNLLPTVALMAQLSLGALLG 302

Query: 325 LLG 327
           L G
Sbjct: 303 LPG 305


>gi|226949780|ref|YP_002804871.1| hypothetical protein CLM_2720 [Clostridium botulinum A2 str. Kyoto]
 gi|226841806|gb|ACO84472.1| putative membrane protein [Clostridium botulinum A2 str. Kyoto]
          Length = 326

 Score = 39.8 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 114/295 (38%), Gaps = 23/295 (7%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +F P    L++ F   PIY    +K   +++  ++I+ + V  +  + L+FL    +   
Sbjct: 31  YFKPFFIILVLLFLCNPIYDFLCNKNIFNNSVNSIISIILVNIILFL-LIFLVGNFIYNN 89

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWAS-ELWTKHLSHPQSLKILSETFLKTNGIDF 148
             L+       +  I    ++ DI   +  +  ++ K+L++  +  +  + F K      
Sbjct: 90  LILLKGYYHNFKTEIDC--FIGDINKMLNMNKHIFNKNLNNVDATLLNVDFFRKGA---- 143

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
                        ++  +     ++++F   D + I   L+++ +++    ++KI   + 
Sbjct: 144 ---------SYTTEWIFAYFIASLSIYFILVDKYVI---LENIKKYIGSNEFEKIKDKIY 191

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSI 267
           K ++        + I   L       +  + +++ LGV+  I+ ++P  G  + F  + +
Sbjct: 192 K-LKEIIKIECFLVIFTTLQTIIGLKILNINNYLMLGVLCGILDILPYIGTVVIFLPLIL 250

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
           Y     N      L     + +    + L    +   ++LP L     L  G + 
Sbjct: 251 YQFYTKNYIIFLGLICLYLLLIIT-RQILETKFMSSKLQLPALAIIISLYIGFKI 304


>gi|254181844|ref|ZP_04888441.1| putative membrane protein [Burkholderia pseudomallei 1655]
 gi|184212382|gb|EDU09425.1| putative membrane protein [Burkholderia pseudomallei 1655]
          Length = 361

 Score = 39.8 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 84/272 (30%), Gaps = 10/272 (3%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +A V +    +  L  L    +   +  V          + +              E  +
Sbjct: 88  VAVVLLSTAIVGGLAGLTIAVIEHFEHTVPNAQNLLGQVMQIVDQ-----ARTRTPEWIS 142

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L             L    +D + +        F         +I A+     D   +
Sbjct: 143 NLLPVDAEQMRTKAAGLMNRHMDQLQQGGKSVARGFGHVL--FGMIIGAMIAIGIDRHKL 200

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            Q L +        +     RIV   I+ + L     AI   L++    +   +P    L
Sbjct: 201 RQPLSTALVARISRFSDAFRRIVFAQIKISALNAFFTAIY--LLVALPIFHQRLPLSKTL 258

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            ++T I  ++P    +    + + + +  ++  A    ++  + +  ++  L   ++GG 
Sbjct: 259 VLVTFIAGLLPVVGNLISNTLIVAVSLSVSMGTAIASLVF-LVVIHKLEYFLNAKIIGGQ 317

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
           I+         ++      G+ G+   P+  A
Sbjct: 318 IESRAWELLLAMLVMEAAFGVPGVIAAPIFYA 349


>gi|302815027|ref|XP_002989196.1| hypothetical protein SELMODRAFT_427799 [Selaginella moellendorffii]
 gi|300143096|gb|EFJ09790.1| hypothetical protein SELMODRAFT_427799 [Selaginella moellendorffii]
          Length = 726

 Score = 39.8 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 83/281 (29%), Gaps = 25/281 (8%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I R  +   + + L+ L+ F   ++  +++        S           FL     V +
Sbjct: 436 IKRVCVWATVALVLFQLRDFVGVIMGTIVLSMIGNTFISWAEEYLPGRRRFLIATMYVVI 495

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW------LSDIPGGMWASELWT 124
           + +     +      + E   ++ ++ L N        +      L    G     +L  
Sbjct: 496 IAVLTGLGIMYIPRLLQEGANIIGRIQLFNFLQQSENPYSLLSEKLKSALGENVTDQLER 555

Query: 125 KHLSHPQSLKILSETFLKTNGIDFI-------------PRFASRFGMIFLDYCLSIIFMI 171
             L+  +   ++ E+         I               + +        + L     +
Sbjct: 556 FLLAVMRPDSVVRESMAGNTAQRSIIFQQLIKEYSGAMVAWLATLISATSRFALQSFVSL 615

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
           I  F F  D  S+   + S      P             +    L + +I   E  VL  
Sbjct: 616 IFSFLFVWDAPSVKAVIISTV----PIGIVAFVETGFLQLSLVVLMVILIHALEAYVLNP 671

Query: 232 AYWLAGVP-SHVA-LGVITAIMAMIPGGAPISFTAVSIYLL 270
           A + A +    +  LGV+      +     I+   ++++ +
Sbjct: 672 AIYSAHLKLHPLLALGVLVFAEHALGVWGLIAAVPMAVFFI 712


>gi|319788206|ref|YP_004147681.1| hypothetical protein Psesu_2619 [Pseudoxanthomonas suwonensis 11-1]
 gi|317466718|gb|ADV28450.1| protein of unknown function UPF0118 [Pseudoxanthomonas suwonensis
           11-1]
          Length = 378

 Score = 39.8 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 42/323 (13%), Positives = 110/323 (34%), Gaps = 19/323 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVS--LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
            +    P+     +++  + V   L+  +    PVL A+       P+    + +     
Sbjct: 29  NQPHGRPRSPSALLVLATLAVGYTLWAAQEVILPVLLAMFFALVGNPL-IRLLRRLWIPR 87

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
              A++  +         L       +  +    +    A +    + R L ++   M  
Sbjct: 88  FIAALLVLLLG-------LAGTTTLAVQLVAPATAWAEQAPREARKIGRELQNLTRPMHE 140

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           +    + ++   + +   +  +    +D      +R          +++ +I+  FFF  
Sbjct: 141 ANRIAEDMARAAAGEANRKVQVVRTRVDDPYAVLTR----TPRLLAAVLAVILLTFFFMV 196

Query: 180 DGFSISQQLDSLGEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            G ++ +   +L        +   I + + + +    L +++I    GL+      L   
Sbjct: 197 YGENLQRNAIALLPGRQQKRFTVDILQSIEREVSRYVLTISLINAVVGLLFAGILVLLRF 256

Query: 239 P--SHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK- 294
           P    +  G +  ++   P  G  I   A+ +   I+ +   A+       + L +++  
Sbjct: 257 PLQEALLWGTMVMLLNYAPYVGPLIGMIAMLLVGFIRFDETLASVTPAVLYLVLHMIEGQ 316

Query: 295 TLRPFLVGGPIKLPFLPTFFGLV 317
            + P ++G  + L  L     L+
Sbjct: 317 LVTPIILGRSMALSPLVLILALM 339


>gi|206559217|ref|YP_002229978.1| hypothetical protein BCAL0824 [Burkholderia cenocepacia J2315]
 gi|198035255|emb|CAR51130.1| putative membrane protein [Burkholderia cenocepacia J2315]
          Length = 360

 Score = 39.8 bits (92), Expect = 0.61,   Method: Composition-based stats.
 Identities = 32/276 (11%), Positives = 84/276 (30%), Gaps = 14/276 (5%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +A V +    +  L  L    +   +  V  +       + +    +      W + L  
Sbjct: 87  VAVVLLSIAIVGALTGLTIGIIEHFEHTVPNLQSLLDQLMQIVEQ-TRARTPAWIANLLP 145

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +   ++   +                A  FG +     +  +  I             
Sbjct: 146 VDVEQMKTKAAVLMHSHMDQLQQSGKSVARGFGHVLFGMIIGAMIAI----------GVE 195

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VPSHV 242
             ++             + S    +++ +      I A   G+ L  A  +    +P   
Sbjct: 196 QGKVRRPLSTALVMRVSRFSDAFRRIVFAQIKISAINAAFTGIYLLVALPIFHQRLPLSK 255

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L ++T I+ ++P    +    + + + +  ++  A     +  + +  ++  L   ++G
Sbjct: 256 TLVLVTFIVGLLPVIGNLISNTLIVAVSLSVSMGTAIASLAF-LVVIHKLEYFLNAKIIG 314

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           G I+         ++      GL G+   P+  A +
Sbjct: 315 GQIESRAWELLLAMLIMEAAFGLPGVIAAPIFYAYL 350


>gi|224827305|ref|ZP_03700397.1| conserved hypothetical protein [Lutiella nitroferrum 2002]
 gi|224600480|gb|EEG06671.1| conserved hypothetical protein [Lutiella nitroferrum 2002]
          Length = 339

 Score = 39.8 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 55/140 (39%), Gaps = 3/140 (2%)

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA--LGVITAIMAMIPGGAPI 260
           ++    KV+ +      + A    L LG A  LAG P  +   L  IT ++ ++P    +
Sbjct: 193 LAASFRKVVFAQVRIAALNAFLTWLFLGVALPLAGTPLPLTKTLIAITFLVGLLPVIGNL 252

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
               + + + +  ++  A    ++  + +  ++  L   +VG  I+         ++   
Sbjct: 253 ISNTMIVVVAMSQSLGLAVAALVF-LVVIHKLEYFLNARIVGSRIQARSWEILLAMIVLE 311

Query: 321 RTMGLLGLFIGPVLMALIAV 340
              GL G+   P+  A +  
Sbjct: 312 AVFGLPGVIAAPIYYAYLKA 331


>gi|67921802|ref|ZP_00515319.1| Protein of unknown function UPF0118 [Crocosphaera watsonii WH 8501]
 gi|67856394|gb|EAM51636.1| Protein of unknown function UPF0118 [Crocosphaera watsonii WH 8501]
          Length = 343

 Score = 39.8 bits (92), Expect = 0.69,   Method: Composition-based stats.
 Identities = 40/309 (12%), Positives = 101/309 (32%), Gaps = 10/309 (3%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             I    L+ ++     V +A++       +   ++ K +    F  VI  + ++ L I+
Sbjct: 12  FIISCYILWEIRQVLLLVFTAIVFATALNRL-VKWLKKFKIRRNFAIVIIVIGIIFLSIL 70

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
               +    + + ++L++      +        LS+      +   W         L   
Sbjct: 71  FGWLVVPPFLDQFQKLLALFPNVWERLRTNLILLSE----TQSRFDWLPPPPSLNDLLTR 126

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +  L     +F   F++   +I     +  + + + +                L    +
Sbjct: 127 LQPLLTDIFANFFTVFSNSLLIILQLIFIYFLTITMVM-----APKKYRYLFLKLFPSFY 181

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               ++I  +    + +   G+TI  +  G + G    +  V   +   ++  ++  IP 
Sbjct: 182 RKRGEEILTLSEVALGNWLTGVTINCLFIGTLSGLGLLVLQVKLVLVHALLAGLLNFIPN 241

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             P +     + + +    +    + +W  I   I    L P ++   + L    T    
Sbjct: 242 VGPATSVVFPLMVALLDEPWKIWAILIWYFIIQNIESYWLTPTVMAKQVSLLPAVTLMAQ 301

Query: 317 VGGVRTMGL 325
           +   RT G+
Sbjct: 302 IFFARTFGI 310


>gi|67643416|ref|ZP_00442162.1| putative membrane protein [Burkholderia mallei GB8 horse 4]
 gi|121598411|ref|YP_991417.1| hypothetical protein BMASAVP1_A0065 [Burkholderia mallei SAVP1]
 gi|167001021|ref|ZP_02266822.1| putative membrane protein [Burkholderia mallei PRL-20]
 gi|254201671|ref|ZP_04908035.1| putative membrane protein [Burkholderia mallei FMH]
 gi|254207003|ref|ZP_04913354.1| putative membrane protein [Burkholderia mallei JHU]
 gi|121227221|gb|ABM49739.1| putative membrane protein [Burkholderia mallei SAVP1]
 gi|147747565|gb|EDK54641.1| putative membrane protein [Burkholderia mallei FMH]
 gi|147752545|gb|EDK59611.1| putative membrane protein [Burkholderia mallei JHU]
 gi|238524768|gb|EEP88199.1| putative membrane protein [Burkholderia mallei GB8 horse 4]
 gi|243063094|gb|EES45280.1| putative membrane protein [Burkholderia mallei PRL-20]
          Length = 361

 Score = 39.8 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 84/272 (30%), Gaps = 10/272 (3%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +A V +    +  L  L    +   +  V          + +              E  +
Sbjct: 88  VAVVLLSTAIVGGLAGLTIAVIEHFEHTVPNAQNLLGQVMQIVDQ-----ARTRTPEWIS 142

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L             L    +D + +        F         +I A+     D   +
Sbjct: 143 NLLPVDAEQMRAKAAGLMNRHMDQLQQGGKSVARGFGHVL--FGMIIGAMIAIGIDRHKL 200

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            Q L +        +     RIV   I+ + L     AI   L++    +   +P    L
Sbjct: 201 RQPLSTALVARISRFSDAFRRIVFAQIKISALNAFFTAIY--LLVALPIFHQRLPLSKTL 258

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            ++T I  ++P    +    + + + +  ++  A    ++  + +  ++  L   ++GG 
Sbjct: 259 VLVTFIAGLLPVVGNLISNTLIVAVSLSVSMGTAIASLVF-LVVIHKLEYFLNAKIIGGQ 317

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
           I+         ++      G+ G+   P+  A
Sbjct: 318 IESRAWELLLAMLVMEAAFGVPGVIAAPIFYA 349


>gi|124383779|ref|YP_001027507.1| hypothetical protein BMA10229_A1525 [Burkholderia mallei NCTC
           10229]
 gi|126450787|ref|YP_001082473.1| hypothetical protein BMA10247_2953 [Burkholderia mallei NCTC 10247]
 gi|126454479|ref|YP_001064890.1| hypothetical protein BURPS1106A_0608 [Burkholderia pseudomallei
           1106a]
 gi|167718041|ref|ZP_02401277.1| hypothetical protein BpseD_03418 [Burkholderia pseudomallei DM98]
 gi|167737057|ref|ZP_02409831.1| hypothetical protein Bpse14_03276 [Burkholderia pseudomallei 14]
 gi|167822688|ref|ZP_02454159.1| hypothetical protein Bpseu9_03361 [Burkholderia pseudomallei 9]
 gi|167844263|ref|ZP_02469771.1| hypothetical protein BpseB_03159 [Burkholderia pseudomallei B7210]
 gi|167892773|ref|ZP_02480175.1| hypothetical protein Bpse7_03341 [Burkholderia pseudomallei 7894]
 gi|226199550|ref|ZP_03795107.1| putative membrane protein [Burkholderia pseudomallei Pakistan 9]
 gi|237810794|ref|YP_002895245.1| hypothetical protein GBP346_A0519 [Burkholderia pseudomallei
           MSHR346]
 gi|242316251|ref|ZP_04815267.1| putative membrane protein [Burkholderia pseudomallei 1106b]
 gi|254196598|ref|ZP_04903022.1| putative membrane protein [Burkholderia pseudomallei S13]
 gi|254357482|ref|ZP_04973756.1| putative membrane protein [Burkholderia mallei 2002721280]
 gi|124291799|gb|ABN01068.1| putative membrane protein [Burkholderia mallei NCTC 10229]
 gi|126228121|gb|ABN91661.1| putative membrane protein [Burkholderia pseudomallei 1106a]
 gi|126243657|gb|ABO06750.1| putative membrane protein [Burkholderia mallei NCTC 10247]
 gi|148026546|gb|EDK84631.1| putative membrane protein [Burkholderia mallei 2002721280]
 gi|169653341|gb|EDS86034.1| putative membrane protein [Burkholderia pseudomallei S13]
 gi|225928431|gb|EEH24461.1| putative membrane protein [Burkholderia pseudomallei Pakistan 9]
 gi|237506669|gb|ACQ98987.1| putative membrane protein [Burkholderia pseudomallei MSHR346]
 gi|242139490|gb|EES25892.1| putative membrane protein [Burkholderia pseudomallei 1106b]
          Length = 361

 Score = 39.8 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 84/272 (30%), Gaps = 10/272 (3%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +A V +    +  L  L    +   +  V          + +              E  +
Sbjct: 88  VAVVLLSTAIVGGLAGLTIAVIEHFEHTVPNAQNLLGQVMQIVDQ-----ARTRTPEWIS 142

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L             L    +D + +        F         +I A+     D   +
Sbjct: 143 NLLPVDAEQMRAKAAGLMNRHMDQLQQGGKSVARGFGHVL--FGMIIGAMIAIGIDRHKL 200

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            Q L +        +     RIV   I+ + L     AI   L++    +   +P    L
Sbjct: 201 RQPLSTALVARISRFSDAFRRIVFAQIKISALNAFFTAIY--LLVALPIFHQRLPLSKTL 258

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            ++T I  ++P    +    + + + +  ++  A    ++  + +  ++  L   ++GG 
Sbjct: 259 VLVTFIAGLLPVVGNLISNTLIVAVSLSVSMGTAIASLVF-LVVIHKLEYFLNAKIIGGQ 317

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
           I+         ++      G+ G+   P+  A
Sbjct: 318 IESRAWELLLAMLVMEAAFGVPGVIAAPIFYA 349


>gi|134279431|ref|ZP_01766143.1| putative membrane protein [Burkholderia pseudomallei 305]
 gi|167814166|ref|ZP_02445846.1| hypothetical protein Bpse9_03428 [Burkholderia pseudomallei 91]
 gi|167901268|ref|ZP_02488473.1| hypothetical protein BpseN_03251 [Burkholderia pseudomallei NCTC
           13177]
 gi|167917514|ref|ZP_02504605.1| hypothetical protein BpseBC_03111 [Burkholderia pseudomallei
           BCC215]
 gi|134248631|gb|EBA48713.1| putative membrane protein [Burkholderia pseudomallei 305]
          Length = 361

 Score = 39.8 bits (92), Expect = 0.72,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 84/272 (30%), Gaps = 10/272 (3%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +A V +    +  L  L    +   +  V          + +              E  +
Sbjct: 88  VAVVLLSTAIVGGLAGLTIAVIEHFEHTVPNAQNLLGQVMQIVDQ-----ARTRTPEWIS 142

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L             L    +D + +        F         +I A+     D   +
Sbjct: 143 NLLPVDAEQMRAKAAGLMNRHMDQLQQGGKSVARGFGHVL--FGMIIGAMIAIGIDRHKL 200

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            Q L +        +     RIV   I+ + L     AI   L++    +   +P    L
Sbjct: 201 RQPLSTALVARISRFSDAFRRIVFAQIKISALNAFFTAIY--LLVALPIFHQRLPLSKTL 258

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            ++T I  ++P    +    + + + +  ++  A    ++  + +  ++  L   ++GG 
Sbjct: 259 VLVTFIAGLLPVVGNLISNTLIVAVSLSVSMGTAIASLVF-LVVIHKLEYFLNAKIIGGQ 317

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
           I+         ++      G+ G+   P+  A
Sbjct: 318 IESRAWELLLAMLVMEAAFGVPGVIAAPIFYA 349


>gi|225568272|ref|ZP_03777297.1| hypothetical protein CLOHYLEM_04346 [Clostridium hylemonae DSM
           15053]
 gi|225162991|gb|EEG75610.1| hypothetical protein CLOHYLEM_04346 [Clostridium hylemonae DSM
           15053]
          Length = 457

 Score = 39.8 bits (92), Expect = 0.72,   Method: Composition-based stats.
 Identities = 38/329 (11%), Positives = 90/329 (27%), Gaps = 63/329 (19%)

Query: 31  FAPVLSALIIGFTSWP-----------IYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
             PV+   +  +   P           +    I K + +            + +  V ++
Sbjct: 81  LKPVIYGCVFAYLMNPIVKQVDNYLRPVLEKKIKKHDGARKLSRACGIFLSIIILFVLII 140

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP-QSLKILSE 138
            L    + E+   +  +V        +P  L+++   +   +L         ++      
Sbjct: 141 TLCNLLIPELYSSIRNLVFT------LPGQLNELVDKLNNVKLEDSTTGALIKTAVEEGT 194

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSII-----------FMIIALFFFYRDGFSISQQ 187
             L+T     +   A+          +SII             I  LF          + 
Sbjct: 195 DMLQTWLRTDLLTRANDIMSNLTVGVISIISEIINALIGIIISIYILFSKETFSRQSKKT 254

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + +L +         ++    ++     +G  I ++  G++      +  +P  V + VI
Sbjct: 255 VYALMKPEHGNMLLHLATKSNEIFGGFIIGKIIDSLIIGVLCFMGLSILNMPYTVLVSVI 314

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  +IP   P      S  L++  +        L+  +                    
Sbjct: 315 IGVTNVIPFFGPYIGAIPSAVLILLSDPVKGIYFILFVLLLQQ----------------- 357

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
                              G  +GP ++ 
Sbjct: 358 -----------------FDGNILGPKILG 369


>gi|134296976|ref|YP_001120711.1| putative transporter [Burkholderia vietnamiensis G4]
 gi|134140133|gb|ABO55876.1| putative transporter [Burkholderia vietnamiensis G4]
          Length = 361

 Score = 39.8 bits (92), Expect = 0.72,   Method: Composition-based stats.
 Identities = 33/274 (12%), Positives = 83/274 (30%), Gaps = 14/274 (5%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +A V +    +  L  L    +   +  V  +       + +    +      W + L  
Sbjct: 88  VAVVLLSIAIVGGLTGLTIGIIQHFEHTVPNLQSLLGQLMQIVEQ-TRARTPAWIANLLP 146

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +   ++   L                A  FG +     +  +  I             
Sbjct: 147 VDVEQMKAKAALLMHSHMDQLQQGGKSVARGFGHVLFGMVIGAMIAI----------GVE 196

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA--GVPSHV 242
             ++             + +    +++ +      I A   G+ L  A  +    +P   
Sbjct: 197 HGKVRRPLSTALVTRVSRFAESFRRIVFAQIKISAINAAFTGIYLLVALPIFQQRLPLSK 256

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L ++T I+ ++P    +    + + + +  ++  A     +  I +  ++  L   ++G
Sbjct: 257 TLVLVTFIVGLLPVIGNLVSNTLIVAVSLSVSMGTAIASLAF-LIVIHKLEYFLNAKIIG 315

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
           G I+         ++      GL G+   P+  A
Sbjct: 316 GQIESRAWELLLAMLIMEAAFGLPGVIAAPIFYA 349


>gi|170700365|ref|ZP_02891375.1| putative transporter [Burkholderia ambifaria IOP40-10]
 gi|170134709|gb|EDT03027.1| putative transporter [Burkholderia ambifaria IOP40-10]
          Length = 360

 Score = 39.4 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 35/284 (12%), Positives = 87/284 (30%), Gaps = 30/284 (10%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVL--------ANQHGIPVPRWLSDIPGG 116
           +A V +    +  L  L    +   +  V  +            Q     P W++++   
Sbjct: 87  VAVVLLSIAIVGGLTGLTIGIIDHFEHTVPNLQSLLGQLMQIVEQTRARTPDWIANLLPV 146

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
                   +  +    L       L+  G       A  FG +     +  +  I     
Sbjct: 147 DV-----EQMKTKAALLMHSHMDQLQQGGK----SVARGFGHVLFGMIIGAMIAI----- 192

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
                     ++             + +    +++ +      I A   G+ L  A  + 
Sbjct: 193 -----GVEHGKVRRPLSTALVTRVSRFAESFRRIVFAQIKISAINAAFTGIYLLVALPIF 247

Query: 237 G--VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
              +P    L ++T I+ ++P    +    + + + +  ++  A     +  + +  ++ 
Sbjct: 248 HQRLPLSKTLVLVTFIVGLLPVIGNLISNTLIVAVSLSVSMGTAIASLAF-LVVIHKLEY 306

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
            L   ++GG I+         ++      GL G+   P+  A +
Sbjct: 307 FLNAKIIGGQIESRAWELLLAMLIMEAAFGLPGVIAAPIFYAYL 350


>gi|126442013|ref|YP_001057645.1| hypothetical protein BURPS668_0592 [Burkholderia pseudomallei 668]
 gi|126221506|gb|ABN85012.1| putative membrane protein [Burkholderia pseudomallei 668]
          Length = 361

 Score = 39.4 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 84/272 (30%), Gaps = 10/272 (3%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +A V +    +  L  L    +   +  V          + +              E  +
Sbjct: 88  VAVVLLSAAIVGGLAGLTIAVIEHFEHTVPNAQNLLGQVMQIVDQ-----ARTRTPEWIS 142

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L             L    +D + +        F         +I A+     D   +
Sbjct: 143 NLLPVDAEQMRAKAAGLMNRHMDQLQQGGKSVARGFGHVL--FGMIIGAMIAIGIDRHKL 200

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            Q L +        +     RIV   I+ + L     AI   L++    +   +P    L
Sbjct: 201 RQPLSTALVARISRFSDAFRRIVFAQIKISALNAFFTAIY--LLVALPIFHQRLPLSKTL 258

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            ++T I  ++P    +    + + + +  ++  A    ++  + +  ++  L   ++GG 
Sbjct: 259 VLVTFIAGLLPVVGNLISNTLIVAVSLSVSMGTAIASLVF-LVVIHKLEYFLNAKIIGGQ 317

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
           I+         ++      G+ G+   P+  A
Sbjct: 318 IESRAWELLLAMLVMEAAFGVPGVIAAPIFYA 349


>gi|167909485|ref|ZP_02496576.1| hypothetical protein Bpse112_03264 [Burkholderia pseudomallei 112]
          Length = 361

 Score = 39.4 bits (91), Expect = 0.75,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 83/272 (30%), Gaps = 10/272 (3%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +A V +    +  L  L    +   +  V          + +              E  +
Sbjct: 88  VAVVLLSTAIVGGLAGLTIAVIEHFEHTVPNAQNLLGQVMQIVDQ-----ARTRTPEWIS 142

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L             L    +D + +        F         +I A+     D   +
Sbjct: 143 NLLPVDAEQMRTKAAGLMNRHMDQLQQGGKSVARGFGHVL--FGMIIGAMIAIGIDRHKL 200

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            Q L +        +     RIV   I+ + L     AI   L++    +   +P    L
Sbjct: 201 RQPLSTALVARISRFSDAFRRIVFAQIKISALNAFFTAIY--LLVALPIFHQRLPLSKTL 258

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            ++T I  ++P    +    + + + +   +  A    ++  + +  ++  L   ++GG 
Sbjct: 259 VLVTFIAGLLPVVGNLISNTLIVAVSLSVGMGTAIASLVF-LVVIHKLEYFLNAKIIGGQ 317

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
           I+         ++      G+ G+   P+  A
Sbjct: 318 IESRAWELLLAMLVMEAAFGVPGVIAAPIFYA 349


>gi|284929637|ref|YP_003422159.1| putative permease [cyanobacterium UCYN-A]
 gi|284810081|gb|ADB95778.1| predicted permease [cyanobacterium UCYN-A]
          Length = 353

 Score = 39.4 bits (91), Expect = 0.77,   Method: Composition-based stats.
 Identities = 45/340 (13%), Positives = 108/340 (31%), Gaps = 17/340 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIG-FTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           ++I+      ++ ++     + +A+II  F +  + +  + K      +  ++    ++ 
Sbjct: 9   FVILSFSFYIVWKVRQLLILLSTAVIIANFLNHGVQA--LQKLGVKRFYSVLLLIAFLLV 66

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           + +   L++FY    +  EL   +                 P   +  +L         +
Sbjct: 67  ILLKFFLYIFYPSSEQFPELFLLISQGIDRLTS--------PIHNFIVQLDPDLTKTFPN 118

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           L  + E          I           L   L+ + ++I       +  +  Q    L 
Sbjct: 119 LNKIIEQLHP--LFQKIAGQGLSVFYTTLGIPLTFLLLLILSLMLLVNPTAYRQGCIRLF 176

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            + + +            ++   + +    I    +      +  +P      V+  I+ 
Sbjct: 177 PYFYRSRINLALIQCDIFLKGELIALLFRMIMIFFLAFIGLSILKIPLSFTQAVLIMILN 236

Query: 253 MIPGGAPIS--FTAVSIYLLIK--GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           + P   PI      ++I  L     ++        +  I     ++ + P ++   I LP
Sbjct: 237 LFPNIGPILSFIPPMAIASLETPLKSLAVLIIFLSFYLIIRQTENRVITPLIIKNRISLP 296

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
                   V      G LG  +   L  +I+V+ KE I+ 
Sbjct: 297 PGFILLSQVLFAMFFGALGFLLAAPLTIIISVLVKEIIVK 336


>gi|242240660|ref|YP_002988841.1| hypothetical protein Dd703_3257 [Dickeya dadantii Ech703]
 gi|242132717|gb|ACS87019.1| conserved hypothetical protein [Dickeya dadantii Ech703]
          Length = 336

 Score = 39.4 bits (91), Expect = 0.77,   Method: Composition-based stats.
 Identities = 48/308 (15%), Positives = 109/308 (35%), Gaps = 14/308 (4%)

Query: 40  IGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA 99
           I     P +   IS K      +AVI+T+ V  L ++    +           V    +A
Sbjct: 42  IVNLLTPYFQKVISGKRARLAVVAVISTIVVSLLSLIFGALVGLLMQEMKDTSVFNARIA 101

Query: 100 NQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI 159
                   + ++ +PG +  S    +H       K ++   L+  G DF+  F +    +
Sbjct: 102 FILDDVQTQLMTYLPGYLPVSVEELQHEFVMWLQKHVA--MLQNMGKDFLHGFVTMLIGM 159

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
            L   +S+  +  ++     D   +  +L      L  ++   +   V   + +T L   
Sbjct: 160 ILGAIISLYSIEPSV-----DKPLLKTELMRRVALLSASFRNIVFAQVKISLVNTILSSL 214

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNAT 279
            I      +     +   +P    L ++T I  ++P    +   +V     +  ++  A 
Sbjct: 215 FI------LGILPTFEIHLPFAKTLVILTFIFGLLPVIGNLISNSVVFIAALSISLPMAL 268

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              ++  + +  ++  L   +VG  IK         ++      G+ G+   P+  A + 
Sbjct: 269 IALVYLML-IHKLEYFLNAQIVGTRIKAHAWEILLAMLVFEAAFGISGVIAAPIYYAYLK 327

Query: 340 VIWKESIM 347
              +++ +
Sbjct: 328 SELRDAAL 335


>gi|226157624|gb|ACO37466.1| MIP09412p [Drosophila melanogaster]
          Length = 220

 Score = 39.4 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 60/159 (37%), Gaps = 6/159 (3%)

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPI 260
           KI+  +   I    + M   +   GL     + + G         + A++A  P  G+  
Sbjct: 7   KIADALENSITVVLVSMFRCSTFTGLFTWLVHTVFGARIVFLPSALAAMLAAAPFLGSYW 66

Query: 261 SFTAVSIYLLIKGNIFNA-TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                 + L +  + F A   LFL         +  +   L GG            + GG
Sbjct: 67  CAVPAFLELWLAQDRFYAGLILFLLQFFVPSSFETAIYADLKGG----HPYLNGLAIAGG 122

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +  +G  G   GP+++     +++ + +A++ ++E  +S
Sbjct: 123 MYWIGWQGAIFGPLMLCFFIGLFEVATLAMRSHQEPRNS 161


>gi|153812088|ref|ZP_01964756.1| hypothetical protein RUMOBE_02484 [Ruminococcus obeum ATCC 29174]
 gi|149831743|gb|EDM86829.1| hypothetical protein RUMOBE_02484 [Ruminococcus obeum ATCC 29174]
          Length = 953

 Score = 39.4 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 25/78 (32%), Gaps = 11/78 (14%)

Query: 20 ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF----LAVIATVSVMCLF- 74
          +L  L   K +   +++AL+IG     I  +      +         A+   ++V+    
Sbjct: 9  VLAVLQLCKPYIIGIVAALVIGIV---IMIACRRMCRDKRFLIRREAAIAMVLAVVVCVN 65

Query: 75 ---IVPLLFLFYYGMLEM 89
               P+  L        
Sbjct: 66 MICFGPMATLIGLATGNG 83


>gi|57641286|ref|YP_183764.1| hypothetical protein TK1351 [Thermococcus kodakarensis KOD1]
 gi|57159610|dbj|BAD85540.1| hypothetical membrane protein [Thermococcus kodakarensis KOD1]
          Length = 290

 Score = 39.4 bits (91), Expect = 0.80,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 154 SRFGMIFLDYC--LSIIFMIIALFFFYRD-GFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                I L +   + II+ +  LF  ++D G  I ++L   GE+L P+ + + ++   + 
Sbjct: 16  GSILQIILYFLAFIMIIYTLYKLFGMFKDWGEKIEKKLKQAGEYLNPSDFSEKAKTNVEA 75

Query: 211 IRSTFLGMT 219
            ++   G+ 
Sbjct: 76  TKTIIKGVL 84


>gi|319639488|ref|ZP_07994237.1| membrane protein [Neisseria mucosa C102]
 gi|317399254|gb|EFV79926.1| membrane protein [Neisseria mucosa C102]
          Length = 357

 Score = 39.4 bits (91), Expect = 0.81,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 86/291 (29%), Gaps = 12/291 (4%)

Query: 50  SFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW 109
                    +  L        +   I+ ++ L  Y ++                  +   
Sbjct: 67  RLHKSLNAHNINLISTTLTLAIVFSIITMMSLGIYHLIHGG-------HVGFMLAKLAAI 119

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
           L D              L +  +    S   L       + R +      F+   + II 
Sbjct: 120 LEDTKNSQDLPAAILNMLPNNMAEIKASAIKLIDEYRAALTRISKNSITSFVYILIGIII 179

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
             +  F   +     +++   L +               +V  +      I     GL L
Sbjct: 180 GAMLSFHRLK--MRKNRRKMPLFKAELVHRIVNFETSFERVFLAQVKISLIDTFLTGLYL 237

Query: 230 GSAYWLAGVPSHVALGVIT--AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
                L GV     + V+    I+ +IP    +    + I L +  +++ A    ++  +
Sbjct: 238 YLVLPLFGVELPFKMTVLIVAFIVGLIPVAGNLISNTIIIILSLGASLYVALASLVF-LV 296

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
            +  ++  L   ++G  I+         +V   R  G+ G+ + PV  A +
Sbjct: 297 VIHKLEYFLNAKIIGSEIESSAWELLVAMVVFERIFGIGGIIVAPVYYAYL 347


>gi|225076176|ref|ZP_03719375.1| hypothetical protein NEIFLAOT_01211 [Neisseria flavescens
           NRL30031/H210]
 gi|224952519|gb|EEG33728.1| hypothetical protein NEIFLAOT_01211 [Neisseria flavescens
           NRL30031/H210]
          Length = 337

 Score = 39.4 bits (91), Expect = 0.85,   Method: Composition-based stats.
 Identities = 47/339 (13%), Positives = 102/339 (30%), Gaps = 35/339 (10%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTS---------------WPIYSSFISKKEESSTFLAVI 65
           L  L  L   F P+L ++I+ +                  P  +         +  L   
Sbjct: 3   LALLIVLHYHFLPLLLSVILTYIFITRTNGVILKLRRRVLPRNTRLHKSLNAHNINLIST 62

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
                +   I+ ++ L  Y ++                  +   L D             
Sbjct: 63  TLTLAIVFSIITMMSLGIYHLIHGG-------HVGFMLAKLAAILEDTKNSQDLPAAILN 115

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L +  +    S   L       + R +      F+   + II   +  F        + 
Sbjct: 116 MLPNNMAEIKASAIKLIEEYRAALTRISKNSITSFVYILIGIIIGAMLSF------HRLK 169

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA------GVP 239
            +        F A   +            FL    I++ +  + G   +L        +P
Sbjct: 170 MRKHRGKMPPFKAELVRRIVNFETSFERVFLAQVKISLIDTFLTGLYLYLVLPLFGVDLP 229

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             + + +I  I+ +IP    +    + I L +  +++ A    ++  + +  ++  L   
Sbjct: 230 FKMTVLIIAFIVGLIPVAGNLISNTIIIILSLGASLYVALASLVF-LVVIHKLEYFLNAK 288

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           ++G  I+         +V   R  G+ G+ + PV  A +
Sbjct: 289 IIGSEIESSAWELLVAMVVFERIFGIGGIIVAPVYYAYL 327


>gi|187922615|ref|YP_001894257.1| hypothetical protein Bphyt_0608 [Burkholderia phytofirmans PsJN]
 gi|187713809|gb|ACD15033.1| conserved hypothetical protein [Burkholderia phytofirmans PsJN]
          Length = 361

 Score = 39.4 bits (91), Expect = 0.93,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 3/142 (2%)

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VPSHVALGVITAIMAMIPG 256
              + +    +++ +      I A+  G+ L     +    +P    L ++T I+ ++P 
Sbjct: 211 RVTRFADAFRRIVFAQVKISAINAVFTGIFLLVILPIFHDTLPLSKTLVLVTFIVGLLPV 270

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
              +    + + + +  +   A    ++  I +  ++  L   +VGG I+         +
Sbjct: 271 IGNLISNTIIVAVALSVSFPAAVMSLVF-LILIHKLEYFLNARIVGGQIEARAWELLIAM 329

Query: 317 VGGVRTMGLLGLFIGPVLMALI 338
           +      GL G+   P+  A I
Sbjct: 330 LIMEAAFGLPGVIAAPIFYAYI 351


>gi|295675427|ref|YP_003603951.1| hypothetical protein BC1002_0333 [Burkholderia sp. CCGE1002]
 gi|295435270|gb|ADG14440.1| conserved hypothetical protein [Burkholderia sp. CCGE1002]
          Length = 361

 Score = 39.4 bits (91), Expect = 0.93,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 87/294 (29%), Gaps = 22/294 (7%)

Query: 50  SFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW 109
                          +A V +  + +  L  L    +   +  V  V       + +   
Sbjct: 75  RIERHMSSRRARW--LAVVLLSTVIVGALTGLTLGIISHFENDVPSVQALLDQAMQLIDQ 132

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
                      +    +L           T L     + + +  +     F    L +I 
Sbjct: 133 -----ARGRIPQFVANYLPVDTEQMKTKATELMHTHANMLQQSGTTVARAFTHVLLGMII 187

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
             I          ++  Q       L  A+  +++R      R  F  + I A+      
Sbjct: 188 GAII---------AVGAQKHIQRLPLSTAFVTRVTRFADAFRRIVFAQVKISALNAVFTA 238

Query: 230 GSAYWLA-----GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLW 284
                +       +P    L ++T I+ ++P    +    + + + +  + F A  + L 
Sbjct: 239 IFLLVVLPTFHDRLPLSKTLVLVTFIVGLLPVIGNLISNTIIVAVALSVS-FPAAIMSLV 297

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             I +  ++  L   +VGG I+         ++      G+ G+   P+  A I
Sbjct: 298 FLILIHKLEYFLNARIVGGQIEARAWELLIAMLVMEAAFGIAGVIAAPIFYAYI 351


>gi|85704044|ref|ZP_01035147.1| hypothetical protein ROS217_13636 [Roseovarius sp. 217]
 gi|85671364|gb|EAQ26222.1| hypothetical protein ROS217_13636 [Roseovarius sp. 217]
          Length = 351

 Score = 39.4 bits (91), Expect = 0.96,   Method: Composition-based stats.
 Identities = 55/340 (16%), Positives = 114/340 (33%), Gaps = 14/340 (4%)

Query: 14  WMIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +I+  +++S   LK     FAP++ AL+ G    P+   F       S  LA    + +
Sbjct: 15  AVILIALILSFAALKTGADIFAPMVLALVTGVMLAPVTDLFERI--GFSCGLASSTVLIL 72

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
               I  L  L    + ++ E + ++    +  I                 L   +    
Sbjct: 73  GVSAIGTLAILAEPLIWQIVEELPRIQYELRSIIAE--------ISNLIRGLQEVNREVG 124

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           ++L   ++   +T+    +P   S   +  L    +++F     FF        +     
Sbjct: 125 EALGAAADAASETSEGGGMPNLTSALFLAPLVLAQALVFCGTLFFFLLTRKRMYAWLSLW 184

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +G         +      +++   FL ++ I  G G  LG A +L  +P       + A+
Sbjct: 185 IGTSDDTQDILRRFTNAERLVARYFLAISCINAGLGAALGGALFLIELPGPFVWAFVAAL 244

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +   G       + +  ++  +   A            I  + + P  VG  I +  
Sbjct: 245 LNFVLYVGPMTVAAGLLLAGIVAFDGLMAVTPPAIFLFLNMIEAQFVTPSFVGRHISVNP 304

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           L  F  LV  +   G +G  I   ++ +   +     +  
Sbjct: 305 LLIFVSLVFWLWLWGPIGGIIAIPVLVIALALLDIFAVDA 344


>gi|217420073|ref|ZP_03451579.1| putative membrane protein [Burkholderia pseudomallei 576]
 gi|254259205|ref|ZP_04950259.1| putative membrane protein [Burkholderia pseudomallei 1710a]
 gi|254296106|ref|ZP_04963563.1| putative membrane protein [Burkholderia pseudomallei 406e]
 gi|157806119|gb|EDO83289.1| putative membrane protein [Burkholderia pseudomallei 406e]
 gi|217397377|gb|EEC37393.1| putative membrane protein [Burkholderia pseudomallei 576]
 gi|254217894|gb|EET07278.1| putative membrane protein [Burkholderia pseudomallei 1710a]
          Length = 361

 Score = 39.1 bits (90), Expect = 0.97,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 83/272 (30%), Gaps = 10/272 (3%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +A V +    +  L  L    +   +  V          + +              E  +
Sbjct: 88  VAVVLLSTAIVGGLAGLTIAVIEHFEHTVPNAQNLLGQVMQIVDQ-----ARTRTPEWIS 142

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L             L    +D + +        F         +I A+     D   +
Sbjct: 143 NLLPVDAEQMRAKAAGLMNRHMDQLQQGGKSVARGFGHVL--FGMIIGAMIAIGIDRHKL 200

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            Q L +        +     RIV   I+ + L     AI   L++    +   +P    L
Sbjct: 201 RQPLSTALVARISRFSDAFRRIVFAQIKISALNAFFTAIY--LLVALPIFHQRLPLSKTL 258

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            ++T I  ++P    +    + + + +   +  A    ++  + +  ++  L   ++GG 
Sbjct: 259 VLVTFIAGLLPVVGNLISNTLIVAVSLSVGMGTAIASLVF-LVVIHKLEYFLNAKIIGGQ 317

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
           I+         ++      G+ G+   P+  A
Sbjct: 318 IESRAWELLLAMLVMEAAFGVPGVIAAPIFYA 349


>gi|115352891|ref|YP_774730.1| putative transporter [Burkholderia ambifaria AMMD]
 gi|172061739|ref|YP_001809391.1| putative transporter [Burkholderia ambifaria MC40-6]
 gi|115282879|gb|ABI88396.1| putative transporter [Burkholderia ambifaria AMMD]
 gi|171994256|gb|ACB65175.1| putative transporter [Burkholderia ambifaria MC40-6]
          Length = 360

 Score = 39.1 bits (90), Expect = 1.00,   Method: Composition-based stats.
 Identities = 31/276 (11%), Positives = 84/276 (30%), Gaps = 14/276 (5%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ V +    +  L  L    +   +  V  +       + +    +      W + L  
Sbjct: 87  VSVVLLSIAIVGGLTGLTIGIIDHFEHTVPNLQSLLGQLMQIVEQ-TRARTPAWIANLLP 145

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +   ++   L                A  FG +     +  +  I             
Sbjct: 146 VDVEQMKAKAALLMHSHMDQLQQGGKSVARGFGHVLFGMIIGAMIAI----------GVE 195

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VPSHV 242
             ++             + +    +++ +      I A   G+ L  A  +    +P   
Sbjct: 196 HGKVRRPLSTALVTRVSRFAESFRRIVFAQIKISAINAAFTGIYLLVALPIFHQRLPLSK 255

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L ++T I+ ++P    +    + + + +  ++  A     +  + +  ++  L   ++G
Sbjct: 256 TLVLVTFIVGLLPVIGNLISNTLIVAVSLSVSMGTAIASLAF-LVVIHKLEYFLNAKIIG 314

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           G I+         ++      GL G+   P+  A +
Sbjct: 315 GQIESRAWELLLAMLIMEAAFGLPGVIAAPIFYAYL 350


>gi|289706353|ref|ZP_06502711.1| permease family protein [Micrococcus luteus SK58]
 gi|289556848|gb|EFD50181.1| permease family protein [Micrococcus luteus SK58]
          Length = 440

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 82/268 (30%), Gaps = 11/268 (4%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           + +AL I     P+     S          + A + +  +    +  L    + +  +LV
Sbjct: 132 IAAALFIALGLDPLVRRVESW-GAPRWVGVLTAALGLAAVAGAFVALLVPTVIEQSTQLV 190

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
                       +P  +  +    W  +L  +                    +  +    
Sbjct: 191 Q----------DLPAIIDGVMRAEWFVQLDEEFHLQEAVRAQTERLAADGAAVTDLFGGL 240

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
             FG   L+   S++ +++   +F      +      L         + +S  +   +  
Sbjct: 241 LGFGQTVLNAVFSVLVVVVLTLYFLSSLPHMKYWAYRLAPRSRRPRIEALSEQITSSVGH 300

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
             +G + +A   G V  +A  +AG P  V L  I A MA IP         +   + +  
Sbjct: 301 YVMGQSFVAALNGAVAFTALAIAGAPFAVLLAAIAAFMAFIPLVGAAIGGTLLTLVSLLT 360

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +   A        + L I    + P ++
Sbjct: 361 SWQTAAVFAAIYFVYLQIEAYVISPRVM 388


>gi|107023713|ref|YP_622040.1| transporter [Burkholderia cenocepacia AU 1054]
 gi|116690800|ref|YP_836423.1| putative transporter [Burkholderia cenocepacia HI2424]
 gi|170734125|ref|YP_001766072.1| putative transporter [Burkholderia cenocepacia MC0-3]
 gi|254247196|ref|ZP_04940517.1| hypothetical protein BCPG_01981 [Burkholderia cenocepacia PC184]
 gi|105893902|gb|ABF77067.1| putative transporter [Burkholderia cenocepacia AU 1054]
 gi|116648889|gb|ABK09530.1| putative transporter [Burkholderia cenocepacia HI2424]
 gi|124871972|gb|EAY63688.1| hypothetical protein BCPG_01981 [Burkholderia cenocepacia PC184]
 gi|169817367|gb|ACA91950.1| putative transporter [Burkholderia cenocepacia MC0-3]
          Length = 360

 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/276 (11%), Positives = 84/276 (30%), Gaps = 14/276 (5%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +A V +    +  L  L    +   +  V  +       + +    +      W + L  
Sbjct: 87  VAVVLLSIAIVGALTGLTLAIIEHFEHTVPNLQSLLGQLMQIVEQ-TRARTPAWIANLLP 145

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +   ++   +                A  FG +     +  +  I             
Sbjct: 146 VDVEQMKTKAAVLMHSHMDQLQQSGKSVARGFGHVLFGMIIGAMIAI----------GVE 195

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VPSHV 242
             ++             + +    +++ +      I A   G+ L  A  +    +P   
Sbjct: 196 QGKVRRPLSTALVTRVSRFADAFRRIVFAQIKISAINAAFTGIYLLVALPIFHQRLPLSK 255

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L ++T I+ ++P    +    + + + +  ++  A     +  + +  ++  L   ++G
Sbjct: 256 TLVLVTFIVGLLPVIGNLISNTLIVAVSLSVSMGTAIASLAF-LVVIHKLEYFLNAKIIG 314

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           G I+         ++      GL G+   P+  A +
Sbjct: 315 GQIESRAWELLLAMLIMEAAFGLPGVIAAPIFYAYL 350


>gi|213859933|ref|ZP_03385637.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 79

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                ++ T    F+ + A+  G   +   L ++F  +     Y  G  ++Q +      
Sbjct: 1   AKVRPYIGTTTTWFVGQ-AAHIGRFMVHCALMLLFSAL----LYWRGEQVAQGIRHFATR 55

Query: 195 LFPAYWKKISRIVPKVIRSTFLGM 218
           L          +  + IR+  LG+
Sbjct: 56  LAGVRGDAAVLLAAQAIRAVALGV 79


>gi|83747068|ref|ZP_00944112.1| Hypothetical membrane spanning protein [Ralstonia solanacearum
           UW551]
 gi|83726198|gb|EAP73332.1| Hypothetical membrane spanning protein [Ralstonia solanacearum
           UW551]
          Length = 587

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 46/326 (14%), Positives = 103/326 (31%), Gaps = 20/326 (6%)

Query: 22  VSLYFLKGFFAPVLS-----ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
            S   +      VL      A I GF  + +     ++     T      +++V  +F++
Sbjct: 262 ASYVLVAAMIVAVLWLHLLPAAIAGFLVYALARRLEARLRARRTLSKRAKSIAVTGVFLI 321

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
               +     L +  LV      +   + +   L  +   +    +          L+  
Sbjct: 322 -AALILAAIGLGIGRLVEHGHGLDGMLLRIADVLDHLRDSLP-PAIADYVPQSVSELRAR 379

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG---FSISQQLDSLGE 193
               +K +G        S  G+  L      +  +I             + S+ L +   
Sbjct: 380 LVEMIKEHGHQ-----VSTLGIDGLRASAMALVGLILGAMMAWSETPDPARSKPLSAALL 434

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAI-GEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           H           +V   ++ + L   + AI   G+V         VP   +L ++T +  
Sbjct: 435 HRLGRLETAFEAVVFAQVKISALNTALAAIYLMGVVPALGLH---VPYSKSLVLLTFVAG 491

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +IP    +      + + +  ++  A     +  + +  ++  +   ++G  I       
Sbjct: 492 LIPVAGNLISNTAIVLMSVAVSLELAVGSLAF-LVIVHKLEYFVNARIIGSRIDARAWEL 550

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALI 338
              L+      G+ G+   PVL A +
Sbjct: 551 ILALIVMEALFGVGGVIAAPVLYAYL 576


>gi|92112341|ref|YP_572269.1| hypothetical protein Csal_0206 [Chromohalobacter salexigens DSM
           3043]
 gi|91795431|gb|ABE57570.1| hypothetical protein Csal_0206 [Chromohalobacter salexigens DSM
           3043]
          Length = 887

 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 31/95 (32%), Gaps = 6/95 (6%)

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           T    +  RF +  G+  L   +++     ++ +  R          +L   L       
Sbjct: 759 TLASFYFVRFVANVGIAVLGTAITLA---SSVAYLARVSQQGKT---ALARRLASILAPL 812

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
              +    IR   +    +    G++L   +W+ G
Sbjct: 813 ARSLASAAIRGVLMASFAVVSWAGIILTIGFWIFG 847


>gi|91781736|ref|YP_556942.1| hypothetical protein Bxe_A4109 [Burkholderia xenovorans LB400]
 gi|91685690|gb|ABE28890.1| Putative membrane protein [Burkholderia xenovorans LB400]
          Length = 361

 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 54/142 (38%), Gaps = 3/142 (2%)

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VPSHVALGVITAIMAMIPG 256
              + +    +++ +      I A+  G+ L     +    +P    L ++T I+ ++P 
Sbjct: 211 RVTRFADAFRRIVFAQVKISAINAVFTGIFLLVILPIFHDTLPLSKTLVLVTFIVGLLPV 270

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
              +    + + + +  +   A    ++  I +  ++  L   +VGG I+         +
Sbjct: 271 IGNLISNTIIVAVALSVSFPAAVMSLVF-LILIHKLEYFLNARIVGGQIEARAWELLIAM 329

Query: 317 VGGVRTMGLLGLFIGPVLMALI 338
           +      G+ G+   P+  A I
Sbjct: 330 LIMEAAFGIPGVVAAPIFYAYI 351


>gi|227820933|ref|YP_002824903.1| putative transmembrane protein [Sinorhizobium fredii NGR234]
 gi|227339932|gb|ACP24150.1| putative transmembrane protein [Sinorhizobium fredii NGR234]
          Length = 374

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 39/343 (11%), Positives = 95/343 (27%), Gaps = 21/343 (6%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL- 73
           + +      +Y +     P+  A+++G                      ++A   V+ L 
Sbjct: 46  LFVVACSAVVYAMAAILMPIAFAIVVGIVLGRAADELARFGLPPMLGGLLLALFFVLGLS 105

Query: 74  -FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
             +  LL        E  +L   VV        V  ++     G  A        +    
Sbjct: 106 SLVNTLLGPITELAREAPKLAESVVER------VLPFIERFEWGRIALARSVGADAFADV 159

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           +   +   L        P        +       +                 S  + +  
Sbjct: 160 VVKNAGPILGAAAASVTPALIQTLIFLAALVLFLLG-----------RVQLRSTIILAFP 208

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                    +I   +   +   F   ++I +  G        + G+P     G+   + +
Sbjct: 209 SRDGRLSAIRIMNAIEDGLTRYFSTASLIYLALGGFTMMIALVGGLPMPPLWGLFAFVSS 268

Query: 253 MIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            IP  G   ++ + +   L+    +  A        +    ++  + P ++G   ++   
Sbjct: 269 FIPYLGVTFMTLSLLVGGLMTHEALVVALAPATAFFLIHLAMENLVVPAILGRRFEVNPF 328

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             F  ++      G +G  +   L  +   I+++      E +
Sbjct: 329 LIFVAILFWTWMWGAVGAILAMPLSLIAMTIFEQLREPPPEPQ 371


>gi|188533842|ref|YP_001907639.1| hypothetical protein ETA_17010 [Erwinia tasmaniensis Et1/99]
 gi|188028884|emb|CAO96747.1| Putative membrane protein [Erwinia tasmaniensis Et1/99]
          Length = 339

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 41/338 (12%), Positives = 112/338 (33%), Gaps = 24/338 (7%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGF----TSWPIYSSFISKKEESSTFLAVIAT 67
             ++++F  L +++ L+    P   A  I +       P+    + K   +     +  +
Sbjct: 15  ASYLLVFCALFAIFPLR--LLPCFLAGFIVYETILALTPLVERLV-KGPIARWISIMFLS 71

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V+++   +  +  L  + + + +   +    A++        LS +      S++     
Sbjct: 72  VALILALVTGITKLISFLLHDFQNPAAFHATASKLLEDAQHTLSPVITRYLPSDIDELQN 131

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                L+      ++T G +     A+    + L   +S+                  ++
Sbjct: 132 QVMGWLREHL-VVVQTFGRNAAHTSATMLIGMLLGAIISLRIST-------------GKR 177

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALG 245
            D+  +         ++     V+ +      +  +  G  L     L G+  P    + 
Sbjct: 178 TDAPLKEALLDRLTNLAAAFHNVVFAQIKVSLVNTVLTGAFLFGILPLFGLHFPFAKTVV 237

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           V+T I  ++P    +    V + + +  ++  A    ++  + +  ++  +   + G  I
Sbjct: 238 VVTFIAGLLPIIGNLISNTVIVLIGLSISLEAALIALIY-LVLIHKLEYFINARIFGSRI 296

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                     ++      GL G+   PV  A +    +
Sbjct: 297 SAKTWEILLAMLVFESAFGLAGVIAAPVYYAYLKAELR 334


>gi|330949492|gb|EGH49752.1| hypothetical protein PSYPI_48098 [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 38

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           +L+ +G    A  L +WG   +  VD  L+P+L+   
Sbjct: 2   WLVWQGEYGMAIFLGIWGMFIISGVDNVLKPYLISRG 38


>gi|171318654|ref|ZP_02907800.1| putative transporter [Burkholderia ambifaria MEX-5]
 gi|171096162|gb|EDT41085.1| putative transporter [Burkholderia ambifaria MEX-5]
          Length = 360

 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 32/276 (11%), Positives = 84/276 (30%), Gaps = 14/276 (5%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +A V +    +  L  L    +   +  V  +       + +    +      W + L  
Sbjct: 87  VAVVLLSIAIVGGLTGLTIGIIDHFEHTVPNLQSLLGQLMQIVEQ-TRARTPAWIANLLP 145

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +   ++   L                A  FG +     +  +  I             
Sbjct: 146 VDVEQMKTKAALLMHSHMDQLQQGGKSVARGFGHVLFGMIIGAMIAI----------GVE 195

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VPSHV 242
             ++             + +    +++ +      I A   G+ L  A  +    +P   
Sbjct: 196 HGKVRRPLSTALVTRVSRFAESFRRIVFAQIKISAINAAFTGIYLLVALPIFHQRLPLSK 255

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L ++T I+ ++P    +    + + + +  ++  A     +  + +  ++  L   ++G
Sbjct: 256 TLVLVTFIVGLLPVIGNLISNTLIVAVSLSVSMGTAIASLAF-LVVIHKLEYFLNAKIIG 314

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           G I+         ++      GL G+   P+  A +
Sbjct: 315 GQIESRAWELLLAMLIMEAAFGLPGVIAAPIFYAYL 350


>gi|323524696|ref|YP_004226849.1| hypothetical protein BC1001_0324 [Burkholderia sp. CCGE1001]
 gi|323381698|gb|ADX53789.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1001]
          Length = 361

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 55/142 (38%), Gaps = 3/142 (2%)

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VPSHVALGVITAIMAMIPG 256
              + +    +++ +      I A+  G+ L     +    +P    L +IT I+ ++P 
Sbjct: 211 RVTRFADAFRRIVFAQVKISAINAVFTGIFLLIVLPIFHDQLPLSKTLVLITFIVGLLPV 270

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
              +    + + + +  + F A  + L   I +  ++  L   +VGG I+         +
Sbjct: 271 IGNLISNTIIVAVALSVS-FPAAVMSLAFLILIHKLEYFLNARIVGGQIEARAWELLVAM 329

Query: 317 VGGVRTMGLLGLFIGPVLMALI 338
           +      GL G+   P+  A I
Sbjct: 330 LVMEAAFGLPGVIAAPIFYAYI 351


>gi|89513830|gb|ABD74755.1| permease [Ensifer adhaerens]
          Length = 86

 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 15 MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
          ++  +I      +  F   +L ++I+    +P++   + +   +      I  VSV  + 
Sbjct: 27 LVALLIFACSRIILPFTGILLWSVILAVMLYPLHQRLVGRV-GNRWSATFIGLVSVALML 85

Query: 75 I 75
          +
Sbjct: 86 V 86


>gi|296161552|ref|ZP_06844357.1| conserved hypothetical protein [Burkholderia sp. Ch1-1]
 gi|295888196|gb|EFG68009.1| conserved hypothetical protein [Burkholderia sp. Ch1-1]
          Length = 361

 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 54/142 (38%), Gaps = 3/142 (2%)

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VPSHVALGVITAIMAMIPG 256
              + +    +++ +      I A+  G+ L     +    +P    L ++T I+ ++P 
Sbjct: 211 RVTRFADAFRRIVFAQVKISAINAVFTGIFLLVILPIFHDTLPLSKTLVLVTFIVGLLPV 270

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
              +    + + + +  +   A    ++  I +  ++  L   +VGG I+         +
Sbjct: 271 VGNLISNTIIVAVALSVSFPAAVMSLVF-LILIHKLEYFLNARIVGGQIEARAWELLIAM 329

Query: 317 VGGVRTMGLLGLFIGPVLMALI 338
           +      G+ G+   P+  A I
Sbjct: 330 LIMEAAFGIPGVVAAPIFYAYI 351


>gi|114762133|ref|ZP_01441601.1| hypothetical protein 1100011001331_R2601_14380 [Pelagibaca
           bermudensis HTCC2601]
 gi|114545157|gb|EAU48160.1| hypothetical protein R2601_14380 [Roseovarius sp. HTCC2601]
          Length = 350

 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 46/348 (13%), Positives = 113/348 (32%), Gaps = 19/348 (5%)

Query: 1   MRETMLNPQGIMR----WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M+   +    ++R     M   ++L  L   +  FAP+  A++ G    P+         
Sbjct: 1   MKRPAIVSDTVLRVSTVIMASGVLLFGLKVAQDIFAPLTLAIVTGVIFAPLADRLERL-- 58

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
                L  +  +  +   I  L +L    +  + + +  +    +       +   I G 
Sbjct: 59  GLPRGLVAMGLIIGIFFAIGALAYLVEPYITTLIDRLPSIKYEIRKLF--IEYQGLIQGF 116

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
              ++     L      K  ++    T+ +   P+  ++         + I    +  F 
Sbjct: 117 DEMNKEVEAALGSGGEQKEAADIPGLTDAMFLAPQILAQ---------MLIFLGGLFFFL 167

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
             R+                P   ++       ++   F  ++++  G G+ +G+A  L 
Sbjct: 168 LTRNEIYRYISAKIGTGMDTPKLLERFCD-AEAMVSKYFAAISVVNAGLGIAVGTALMLL 226

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL-FLWGAIELFIVDKT 295
           G+P  V  G+   ++  +    P +  A  +   +       T               + 
Sbjct: 227 GLPGAVVWGIAAMLLNFVLYLGPAALAAGLLLAGVVNYDGLMTFAPMAIYLCCNMTEAQF 286

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           + P L+G  +++     F  L+  +   G LG  +   +  ++  ++ 
Sbjct: 287 VTPALIGRHVQINPFLIFVSLIFWLWFWGPLGGIVAIPVTLILLRLFD 334


>gi|253996384|ref|YP_003048448.1| putative permease [Methylotenera mobilis JLW8]
 gi|253983063|gb|ACT47921.1| putative permease [Methylotenera mobilis JLW8]
          Length = 347

 Score = 38.7 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 54/143 (37%), Gaps = 3/143 (2%)

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA--LGVITAIMAMIPGGAPI 260
           +S    +V+ +      I     G+ L     L G+   +   +  IT ++ +IP    +
Sbjct: 201 LSDAFKRVVFAQIRISAINTFFTGIYLAVVLPLMGIHLPLVKTMIAITFVVGLIPVIGNL 260

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
              AV + + +   +  A    L+  + +   +  L   +VGG I+         ++   
Sbjct: 261 ISNAVIVVVSLSQTLAVALGSLLY-LVVIHKFEYFLNARIVGGQIRANAWELLIAMLCME 319

Query: 321 RTMGLLGLFIGPVLMALIAVIWK 343
              GL+G+   P+  A +    +
Sbjct: 320 AAFGLIGIVAAPIYYAYVKAELR 342


>gi|85057988|ref|YP_453690.1| hypothetical protein SG0010 [Sodalis glossinidius str. 'morsitans']
 gi|84778508|dbj|BAE73285.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 333

 Score = 38.7 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 51/343 (14%), Positives = 111/343 (32%), Gaps = 21/343 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           ET L     +   +   +++ L+    F A  L+  +I  +  P    F           
Sbjct: 5   ETWLKATSYLLMFLFITLIIPLHLFPCFIAGFLAYEVI-ISLTP---WFERLVGSGRARW 60

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            V+  ++   +  + L  +          LVS +    Q GI +    + I   +     
Sbjct: 61  VVVTLIAAFVVIAMTLGIV---------SLVSFLTSDIQRGIDITAETNRIFSDVKNRIP 111

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                  P+S + L +        + I       G  FL   ++I   +I       +  
Sbjct: 112 DYLPSFLPESAEELKDQLFALVESNLI--IIRNMGRSFLHGLITIFIGLIIGAVISLNKP 169

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           S     ++            +S+    ++ +      +  +   +++   + L GV   +
Sbjct: 170 SGR---NTYFTQQLLERLHYLSQAFRNIVFAQIKVSLVNTLLTSMMILVLFPLFGVHLPL 226

Query: 243 --ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V T I  ++P    +    + I   +  ++   + + L+  I +  ++  L   +
Sbjct: 227 GKTLIVATFIFGLLPIIGNLISNFMIIISALSISLSVGSVMVLY-LILIHKLEYFLNAEI 285

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           VG  I          ++      GL GL   P+  A +    +
Sbjct: 286 VGSRINAKSWELLLAMLIFEAAFGLEGLVAAPIYYAYLKTELR 328


>gi|71891811|ref|YP_277540.1| transmembrane protein [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
 gi|71795917|gb|AAZ40668.1| probable transmembrane protein [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 335

 Score = 38.7 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 53/152 (34%), Gaps = 3/152 (1%)

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VPSHVALGV 246
           D+            +SR    ++ +     ++  +   +++     L G  +P    L V
Sbjct: 175 DTFFITQLSERIYNLSRAFRNIVFAQIKISSVNTLLTSIIIFVLLPLIGQSLPLGKTLTV 234

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           IT I  M+P    +    +     +  ++     + ++  I +  ++  L   ++G  I 
Sbjct: 235 ITFIFGMLPIIGNLISNIMITIAALSISLSIGVMMLIY-LILIHKLEYFLNAEIIGNKIN 293

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
                    ++      GL GL   P+  A +
Sbjct: 294 ANPWELILSMLLLESIFGLEGLIAAPIFYAYL 325


>gi|260655571|ref|ZP_05861059.1| membrane protein [Jonquetella anthropi E3_33 E1]
 gi|260630019|gb|EEX48213.1| membrane protein [Jonquetella anthropi E3_33 E1]
          Length = 343

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 63/178 (35%), Gaps = 4/178 (2%)

Query: 168 IFMIIALFFFYRDGFSISQQLDS-LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
           + + I L F       +  +L     +         +   +   I      M +I+   G
Sbjct: 143 VMVFIFLMFILVGSPYVELKLRRAFADEKSFHRVVGMLATISSQIGRFLGVMALISAVTG 202

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           L +  A  L  V    + G++   +  IP  G+ ++     +  +++        L    
Sbjct: 203 LCVWMALSLLKVEFAASWGLLAFALNFIPTVGSIVASIPPILVAVVQFYPGFVLPLATAL 262

Query: 286 AI--ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++     ++   + P ++G  + L  +     L+      G++G  +   L A++ ++
Sbjct: 263 SLLAIQMLIGNIITPKVMGDRLNLSPVVILLSLLFWGWLWGVMGALLAMPLAAILKIV 320


>gi|74316069|ref|YP_313809.1| hypothetical protein Tbd_0051 [Thiobacillus denitrificans ATCC
           25259]
 gi|74055564|gb|AAZ96004.1| membrane protein, putative [Thiobacillus denitrificans ATCC 25259]
          Length = 355

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 94/273 (34%), Gaps = 11/273 (4%)

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L+ L + G      ++         G+ + +    I        LW      
Sbjct: 80  VLVVSLITLIVLGFLGGASAAVILYLRTEGGLAGL-LSKMAEIIENSRELLPLWAAAWLP 138

Query: 130 PQSLKILSETFLK--TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                ++ +  +         I + +   G   L++ +    MII  F   R   +  ++
Sbjct: 139 QGDESVIRQALVDWLRVHAQDIRKLSGDAGRGLLNFIIG---MIIGSFVALR--EARPRR 193

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA--LG 245
             +           ++     +V+ +      + A+  G+ L       GV       + 
Sbjct: 194 SLAPLAEAMYERVNRLGEAFRRVVFAQVRISALNALLTGIYLVVVLPAFGVHLTFTKTMI 253

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           V+T ++ ++P    +    V + + +  ++  A    L+  + +  ++  +   ++GG I
Sbjct: 254 VVTFLVGLLPVLGNLISNTVIVVISLSHSLEVAASSLLF-LVLIHKLEYFVNARIIGGQI 312

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           +         ++      GL G+   P+  A I
Sbjct: 313 QARAWELLIAMLVMEAAFGLQGVVAAPIFYAYI 345


>gi|88808465|ref|ZP_01123975.1| hypothetical protein WH7805_02207 [Synechococcus sp. WH 7805]
 gi|88787453|gb|EAR18610.1| hypothetical protein WH7805_02207 [Synechococcus sp. WH 7805]
          Length = 333

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 45/144 (31%), Gaps = 4/144 (2%)

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + + +           ++       +     GMT+ A    L+  +      VP  +   
Sbjct: 164 RMVIAATPRPARDAMAEVLNRCRAALGGWLAGMTLSATAVFLLTWAGLAALQVPLALLSA 223

Query: 246 VITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           ++  ++  +P  G    +   + I LLI         + +   +   +    L P L+  
Sbjct: 224 LVCGVLTFVPTIGPTAATVLPLGIALLIS--PTLMVQVLVLRLVIQNLEAFLLTPILLRR 281

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLG 327
            + L         +     +GL G
Sbjct: 282 TVNLLPTVALTSQLSLGALLGLPG 305


>gi|254251401|ref|ZP_04944719.1| hypothetical protein BDAG_00586 [Burkholderia dolosa AUO158]
 gi|124894010|gb|EAY67890.1| hypothetical protein BDAG_00586 [Burkholderia dolosa AUO158]
          Length = 360

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 32/276 (11%), Positives = 84/276 (30%), Gaps = 14/276 (5%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +A V +    +  L  L    +   +  V  +       + +    +      W + L  
Sbjct: 87  VAVVLLSVAIVGALTGLTIGIIEHFEHTVPNLQTLLGQLMQIVEQ-TRARTPAWIANLLP 145

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +   ++   +                A  FG +     +  +  I             
Sbjct: 146 VDVEQMKTKAAVLMHSHMDQLQQSGKSVARGFGHVLFGMIIGAMIAI----------GVE 195

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VPSHV 242
             ++             + +    +++ +      I A   GL L  A  +    +P   
Sbjct: 196 HGKVRRPLSTALVTRVSRFADAFRRIVFAQIKISAINAAFTGLYLLVALPIFHERLPLSK 255

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L ++T I+ ++P    +    + + + +  ++  A     +  + +  ++  L   ++G
Sbjct: 256 TLVLVTFIVGLLPVIGNLISNTLIVAVSLSVSMGTAIASLAF-LVIIHKLEYFLNAKIIG 314

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           G I+         ++      GL G+   P+  A +
Sbjct: 315 GQIESRAWELLLAMLIMEAAFGLPGVIAAPIFYAYL 350


>gi|298527597|ref|ZP_07015006.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|298497391|gb|EFI32685.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
          Length = 146

 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 1/118 (0%)

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATC 280
           A+ +   +G+   + GVP  + L  +    A IP  GA ++     +  L+   I  A  
Sbjct: 2   ALTDAAGVGAGLAVMGVPLALPLASLVFFGAFIPLIGAVVAGFLAVVVALLAKGIGYALI 61

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
                     +    L+P ++G  + +  L     +  G    G++G  +    +A  
Sbjct: 62  TVGLLIAVNQLEAHLLQPLVMGRAVSIHPLAVVLAIAAGGVLAGVVGALLAVPTVAFF 119


>gi|121608738|ref|YP_996545.1| hypothetical protein Veis_1773 [Verminephrobacter eiseniae EF01-2]
 gi|121553378|gb|ABM57527.1| conserved hypothetical protein [Verminephrobacter eiseniae EF01-2]
          Length = 343

 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 46/151 (30%), Gaps = 3/151 (1%)

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L          + +   +IV            + A+   L+     W   +P    L   
Sbjct: 186 LTRQLRLRITLFGESFDQIVAAQFWIASFNTVLTALF--LLFMLPLWGLRLPYTTVLITF 243

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           T + A++P    +    V   + +  +   A    ++  I +   +  +   +VG   ++
Sbjct: 244 TFVAALVPIVGNLVCNVVITIVGLSVSPLAAAACLVF-LILIHKAEYVINAKVVGRRTQM 302

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
                   +       G  GL   P+  A +
Sbjct: 303 SVWELLSVMFVAEAVFGPAGLVAAPLFYAYL 333


>gi|254480030|ref|ZP_05093278.1| hypothetical protein GPB2148_3065 [marine gamma proteobacterium
           HTCC2148]
 gi|214039592|gb|EEB80251.1| hypothetical protein GPB2148_3065 [marine gamma proteobacterium
           HTCC2148]
          Length = 307

 Score = 38.3 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 65/181 (35%), Gaps = 13/181 (7%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI-ATVSVMCLFIVP--LLFLF 82
            +  F    L AL+I      I         E    +A +  TV V+ + I+P  L  + 
Sbjct: 16  LMYVFLPIFLLALVIEVA---IDRKQSRHLFEKQDTVASLWMTVFVVFVDILPKFLALIA 72

Query: 83  YYGMLEMKELV-----SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +Y +  +  L                +    +            LW  H+SH  ++K+  
Sbjct: 73  FYFLHSISPLADIVQRQWWAWLLLFFLDDITYYCMHRANHEVRILWAGHVSHHSAVKMNF 132

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDY--CLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            T L+    + + ++A    +  L +   +  + M I LF+ +     +  +L    E++
Sbjct: 133 ATALRQGVTERVHKYAFWLPLPLLGFDPMMIFLMMSINLFYQFWLHTELIDKLPLWFENV 192

Query: 196 F 196
           F
Sbjct: 193 F 193


>gi|225025389|ref|ZP_03714581.1| hypothetical protein EIKCOROL_02287 [Eikenella corrodens ATCC
           23834]
 gi|224941833|gb|EEG23042.1| hypothetical protein EIKCOROL_02287 [Eikenella corrodens ATCC
           23834]
          Length = 352

 Score = 38.3 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 46/352 (13%), Positives = 103/352 (29%), Gaps = 28/352 (7%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGF-FAPVLSALIIGFTS---------------WPIY 48
           M       R     ++  +L  +  F F P+L ++I+ +                  P  
Sbjct: 1   MHTETTKFRTASYILMAAALLVILYFRFLPLLLSIILTYIFINRTNGLILWMRHRLLPHN 60

Query: 49  SSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR 108
           +         +  L        + L  + L+ L  Y ++    +   +         +  
Sbjct: 61  TFLHRSLNVRNINLVSATFTISLVLLAITLMALGVYRLIHSGHITVMLAK-------LAA 113

Query: 109 WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII 168
            L++              L    +    +   L T     + R +      F+   + +I
Sbjct: 114 ILANTKNNGELPPAILNMLPENLAEIKAAAAELLTEYGATLTRISKNSFTSFVYVLIGVI 173

Query: 169 FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLV 228
              +  F    +      Q+      L             +V  +      I      + 
Sbjct: 174 IGALLSFHRL-NTRRSRHQMPPFKVQLV-RRITNFQTSFERVFIAQVKISLIDTAVTAVY 231

Query: 229 LGSAYWLAGVPSHVALGVIT--AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           L       GV     L V+    ++ ++P    +    V I L +  +++ A    ++  
Sbjct: 232 LYLILPAFGVELPFRLTVLVIAFVVGLVPVAGNLVSNTVIIILSLGASLYVAAASLVF-L 290

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           + +  ++  L   ++G  I+         +V   R  G+ G+   PV  A +
Sbjct: 291 VVVHKLEYFLNAKIIGSQIESSAWELLLVMVVFERIFGISGIITSPVYYAYL 342


>gi|237843239|ref|XP_002370917.1| hypothetical protein TGME49_016070 [Toxoplasma gondii ME49]
 gi|211968581|gb|EEB03777.1| hypothetical protein TGME49_016070 [Toxoplasma gondii ME49]
 gi|221481884|gb|EEE20254.1| conserved hypothetical protein [Toxoplasma gondii GT1]
 gi|221502381|gb|EEE28114.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 2284

 Score = 38.3 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 306  KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL-IAVIWKESIMAIKENKE 354
                      +  G+ T G+ G+ IGPVL  + +  +   +  + +  +E
Sbjct: 1514 DSNPWLVGLSVALGLSTFGMKGIIIGPVLATIPLIALTAAAKFSERRTRE 1563


>gi|300797485|ref|NP_001179535.1| GPI ethanolamine phosphate transferase 1 [Bos taurus]
 gi|297464085|ref|XP_002703088.1| PREDICTED: phosphatidylinositol glycan anchor biosynthesis, class N
           [Bos taurus]
 gi|297489861|ref|XP_002697829.1| PREDICTED: phosphatidylinositol glycan anchor biosynthesis, class N
           isoform 1 [Bos taurus]
 gi|297489863|ref|XP_002697830.1| PREDICTED: phosphatidylinositol glycan anchor biosynthesis, class N
           isoform 2 [Bos taurus]
 gi|296473765|gb|DAA15880.1| phosphatidylinositol glycan anchor biosynthesis, class N isoform 1
           [Bos taurus]
 gi|296473766|gb|DAA15881.1| phosphatidylinositol glycan anchor biosynthesis, class N isoform 2
           [Bos taurus]
          Length = 931

 Score = 38.3 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           P+  + ++++FI+ V +  L  F+  +L+A ++   +WP    FI+     +  +++   
Sbjct: 541 PRRFLGYLLLFILGVEVLVLSFFYRYMLTAGLVALAAWP----FITALWTRAKSISLSWI 596

Query: 68  VSVMCLFIVPLLFLFY 83
              + L + PL+ +  
Sbjct: 597 FFCLLLAVFPLMPVVG 612


>gi|319954226|ref|YP_004165493.1| pspc domain protein [Cellulophaga algicola DSM 14237]
 gi|319422886|gb|ADV49995.1| PspC domain protein [Cellulophaga algicola DSM 14237]
          Length = 593

 Score = 38.3 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 56/161 (34%), Gaps = 9/161 (5%)

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF--LGMTIIAIGEGLVLGSAYWLAGVP 239
             + +  D + + +    ++K+   V    ++ F  LG  I+   + +       L    
Sbjct: 186 RKVKEGFDEVADRVKNVDYEKVGNKVKSSGKTFFDTLGEIIMFFFKIIGKFVGILLILTG 245

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               + ++     +      I    +++Y L+         + ++  + + I      P 
Sbjct: 246 GAGLIAMLVGFFTLGVFDT-IHLGPLNLYELVDATDTPFWIVAIFAFLLVAI------PL 298

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
                + L  L T    +G V    LLGL++  ++  +I  
Sbjct: 299 FFLMYLGLKILITNLKSIGAVAKFTLLGLWLISLIAIMILA 339


>gi|187926885|ref|YP_001893230.1| putative transmembrane protein [Ralstonia pickettii 12J]
 gi|241665214|ref|YP_002983573.1| hypothetical protein Rpic12D_3642 [Ralstonia pickettii 12D]
 gi|187728639|gb|ACD29803.1| putative transmembrane protein [Ralstonia pickettii 12J]
 gi|240867241|gb|ACS64901.1| conserved hypothetical protein [Ralstonia pickettii 12D]
          Length = 341

 Score = 38.3 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 46/324 (14%), Positives = 99/324 (30%), Gaps = 12/324 (3%)

Query: 18  FIILVSLYFLKGFFAPVLS-----ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
            I  VS   +      VL      A I G   + +     +        +     ++V+ 
Sbjct: 12  AIKTVSYVLVVAMILAVLWLRLLPAAIAGLLVYTLSRRLEASLRRRPVLVTHAKAIAVIG 71

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           + +V  L L   G+  +  LV            +   L ++   +  S +          
Sbjct: 72  VSVVAALILAGIGLG-IGRLVEHGHGLEGMLTRIADVLDNLRASLPGS-VADYIPPSVTE 129

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           L+I     LK +G   +           +   + +I   +  +    D         +L 
Sbjct: 130 LRIRLVEMLKEHGRQ-VSTVGIDGLRHSVLALIGLIVGAMVAWSDAPDPTRHKPLAAALL 188

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L        + +  +V  S            G +         VP   +L ++T +  
Sbjct: 189 NRLGRLTAAFETVVFAQVKISALNTTLAAIYLLGALPVVG---QHVPYSKSLILLTFVAG 245

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +IP    +   A  + + +  ++  A    ++  + +  ++  +   ++G  I       
Sbjct: 246 LIPVVGNLISNAAIVVMSVTASLELAVASLVF-LVIVHKLEYFVNARIIGSRIDARAWEL 304

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMA 336
              L+      G+ G+   PVL A
Sbjct: 305 ILALILMEALFGVGGVIAAPVLYA 328


>gi|238794975|ref|ZP_04638571.1| hypothetical protein yinte0001_11120 [Yersinia intermedia ATCC
           29909]
 gi|238725678|gb|EEQ17236.1| hypothetical protein yinte0001_11120 [Yersinia intermedia ATCC
           29909]
          Length = 336

 Score = 38.3 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 52/316 (16%), Positives = 99/316 (31%), Gaps = 15/316 (4%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F A  L   I+   + P +   I  K      +AVI+T+ V  L  +    + Y      
Sbjct: 33  FMAGFLVYEIVNILT-PHFQKVIGDKRARWLVVAVISTLVVSLLTTIIGTIVGYLMQDMK 91

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
                   +A             +PG +  S +  K+    +  + L    L+T G   +
Sbjct: 92  NISGINTRIAFILQDVQQEVAKYLPGYLPLSVVELKNEILSRLQQHLV--LLQTMGKSIL 149

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
               +    + L   +S+  +         D       L S          +    IV  
Sbjct: 150 HGLVTMLIGMVLGAIVSLCSI---------DSTGDRPLLKSELMKRISLLSQAFRNIVFA 200

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            ++ + +     AI   L+         +P    L V T I  ++P    +    +    
Sbjct: 201 QVKISTINTVFSAIF--LLGVLPLCGIYIPLAKTLVVFTFIFGLLPVIGNLISNTIVFIS 258

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            +  ++  A    L+  I +   +  L   +VG  I          ++      GL G+ 
Sbjct: 259 GLSVSLGVALIALLY-LIVIHKFEYFLNARIVGTKINAHSWEILLAMLIFEAAFGLAGVV 317

Query: 330 IGPVLMALIAVIWKES 345
             P+  A +    +E+
Sbjct: 318 AAPIYYAYLKSELREA 333


>gi|254175278|ref|ZP_04881939.1| putative membrane protein [Burkholderia mallei ATCC 10399]
 gi|160696323|gb|EDP86293.1| putative membrane protein [Burkholderia mallei ATCC 10399]
          Length = 344

 Score = 38.3 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 84/272 (30%), Gaps = 10/272 (3%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +A V +    +  L  L    +   +  V          + +              E  +
Sbjct: 71  VAVVLLSTAIVGGLAGLTIAVIEHFEHTVPNAQNLLGQVMQIVDQ-----ARTRTPEWIS 125

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L             L    +D + +        F         +I A+     D   +
Sbjct: 126 NLLPVDAEQMRAKAAGLMNRHMDQLQQGGKSVARGFGHVL--FGMIIGAMIAIGIDRHKL 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            Q L +        +     RIV   I+ + L     AI   L++    +   +P    L
Sbjct: 184 RQPLSTALVARISRFSDAFRRIVFAQIKISALNTFFTAIY--LLVALPIFHQRLPLSKTL 241

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            ++T I  ++P    +    + + + +  ++  A    ++  + +  ++  L   ++GG 
Sbjct: 242 VLVTFIAGLLPVVGNLISNTLIVAVSLSVSMGTAIASLVF-LVVIHKLEYFLNAKIIGGQ 300

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
           I+         ++      G+ G+   P+  A
Sbjct: 301 IESRAWELLLAMLVMEAAFGVPGVIAAPIFYA 332


>gi|21230392|ref|NP_636309.1| membrane protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66769614|ref|YP_244376.1| membrane protein [Xanthomonas campestris pv. campestris str. 8004]
 gi|188992826|ref|YP_001904836.1| Putative small-conductance mechanosensitive channel [Xanthomonas
           campestris pv. campestris str. B100]
 gi|21111949|gb|AAM40233.1| membrane protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66574946|gb|AAY50356.1| membrane protein [Xanthomonas campestris pv. campestris str. 8004]
 gi|167734586|emb|CAP52796.1| Putative small-conductance mechanosensitive channel [Xanthomonas
           campestris pv. campestris]
          Length = 375

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 68/207 (32%), Gaps = 19/207 (9%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS-TFLAVIATVSVMCLFIVPLLFLFYY 84
            ++ +  P+ +AL+ G  +W +      + +        +I  V++   FI+PLLFL   
Sbjct: 7   VIREYAIPLGAALLAGLVAWSLLLWLFRRMQGRDYRRARIIRVVTLPAAFILPLLFL--S 64

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
              E   L  K + A QH + V      I G +    +          L+          
Sbjct: 65  VATEATPLSEKALAAVQHLLHV-----GIVGCVTWLLVRAVAAGEAAILRSNPIEVADNL 119

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               I         + +   + +   ++ L F         +Q+  +G+ L  +    I 
Sbjct: 120 TARRIQTQTRVLSRVVMGAVILLGISVVLLGF---------EQVRQIGKTLLASAG--II 168

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGS 231
            +V  +      G  I  +   L    
Sbjct: 169 GLVAGIAAKPVFGNLIAGLQIALTQPI 195


>gi|257454309|ref|ZP_05619575.1| putative membrane protein [Enhydrobacter aerosaccus SK60]
 gi|257448326|gb|EEV23303.1| putative membrane protein [Enhydrobacter aerosaccus SK60]
          Length = 382

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 53/151 (35%), Gaps = 3/151 (1%)

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV--ITAIMAM 253
               + ++      V  +     +I  I   + L     L G P  +A  V  IT    +
Sbjct: 228 LRQKFDELIMGFNDVFFAQVKISSINTILTSVFLLGILPLLGHPLPMAWTVVLITFCAGL 287

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
            P    +    V + L +   +  +    +W  + +  ++  L   ++G  I+       
Sbjct: 288 FPVVGNLVSNIVIVLLSLTHGLGISILSLVW-LVSIHKLEYFLNAQIIGHKIRASAWELL 346

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             ++    T GL GL   PV+ A I  I  +
Sbjct: 347 LFILVLEATFGLAGLISAPVIYAQIKRILAD 377


>gi|253731993|ref|ZP_04866158.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724403|gb|EES93132.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 213

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 69/189 (36%), Gaps = 20/189 (10%)

Query: 10  GIMRWMIMFIILVSL----YFLKGFF-------APVLSALIIGFTSWPIYSSFISKKEES 58
            ++  +++ I++       Y    F        AP++ +LI+ +   PI +     +   
Sbjct: 32  SLIALVLLGIVIFIFEKVSYVFDPFIIVFKTIAAPIIVSLILFYLFNPIVNMMERYRIPR 91

Query: 59  STFLAV--IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
              +++  +A V V+ L +  L+ +    +       S V  + Q+   +   +  I   
Sbjct: 92  VAGISIIYLAVVGVITLIVNLLIPIIGSQVD------SLVKNSPQYLEKLINSIDKIANN 145

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
            + S  +++      SL     + L      F  + A+ F     +  + I+     LFF
Sbjct: 146 TFFSSYYSQINDWLNSLPKKIPSMLSEFTDGFGSKIAT-FAETIANIGVVIVTTPFVLFF 204

Query: 177 FYRDGFSIS 185
             +DG    
Sbjct: 205 MLKDGHHFK 213


>gi|298491023|ref|YP_003721200.1| hypothetical protein Aazo_2011 ['Nostoc azollae' 0708]
 gi|298232941|gb|ADI64077.1| protein of unknown function UPF0118 ['Nostoc azollae' 0708]
          Length = 99

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%)

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           MIPG  P    +    +++  N + +  + +   I   I D  + P ++ G + L  +  
Sbjct: 1   MIPGIGPTLGVSTITLIILAQNTWLSLKVLIACIILQQIQDNLIAPRVIQGIMNLKPVVV 60

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           FF L+ G    GLLG+FI   +  ++  + +
Sbjct: 61  FFSLLVGAGLAGLLGVFISIPIGGIVVALLE 91


>gi|322798949|gb|EFZ20420.1| hypothetical protein SINV_06589 [Solenopsis invicta]
          Length = 98

 Score = 37.9 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%)

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
               T   + GG+  +G+ G   GP+L+  I VI   S   +   +E+I S +
Sbjct: 17  HPYLTGLSIAGGIFCLGVEGAIFGPLLLCCIMVIINLSRRYLHSPEEEILSTY 69


>gi|297538411|ref|YP_003674180.1| putative permease [Methylotenera sp. 301]
 gi|297257758|gb|ADI29603.1| putative permease [Methylotenera sp. 301]
          Length = 344

 Score = 37.9 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 50/152 (32%), Gaps = 3/152 (1%)

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI--TAIM 251
                  +  S    +V+ +      I      + L     L GV   +   +I  T ++
Sbjct: 189 RALAGRGELFSDAFRRVVFAQLRIAAINTTFTAIYLAIVLPLMGVHLPLVKTMIGITFVI 248

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP    +    + + + +  ++  A     +  I +   +  L   +VG  I+     
Sbjct: 249 GLIPVIGNLISNTMIVVVSLSQSLGVAIASLAY-LIIIHKFEYFLNARIVGSQIRANAWE 307

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               ++      GL G+   P+  A I    +
Sbjct: 308 LLIAMLCMEAAFGLAGIVAAPIYYAYIKSELR 339


>gi|27383518|ref|NP_775051.1| hypothetical protein pCTX-M3_092 [Citrobacter freundii]
 gi|113706755|ref|YP_724474.1| hypothetical protein pMUR050_017 [Escherichia coli]
 gi|300836978|ref|YP_003754032.1| hypothetical protein pKP048_p039 [Klebsiella pneumoniae]
 gi|27261371|gb|AAN87712.1| putative protein [Citrobacter freundii]
 gi|109390491|gb|ABG33793.1| hypothetical protein pMUR050_017 [Escherichia coli]
 gi|299474782|gb|ADJ18606.1| hypothetical protein [Klebsiella pneumoniae]
 gi|323700895|gb|ADY00048.1| hypothetical protein [Escherichia coli]
          Length = 61

 Score = 37.9 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 25/42 (59%)

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           GG++  GL+GL  GP++ AL  V+ +   +  K+  E+  ++
Sbjct: 20  GGLQLFGLIGLIYGPIIFALTMVLLRLYTIEFKDFLERQDNS 61


>gi|325120028|emb|CBZ55581.1| conserved hypothetical protein [Neospora caninum Liverpool]
          Length = 2214

 Score = 37.9 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 19/50 (38%)

Query: 306  KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                      +  G+ T G+ G+ IGPVL  +  ++   +    +    +
Sbjct: 1472 DSNPWLVGLSVALGLSTFGMKGIIIGPVLATIPLIVLTAAAKFSERRTRE 1521


>gi|70951954|ref|XP_745178.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56525419|emb|CAH74887.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 635

 Score = 37.9 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/199 (12%), Positives = 65/199 (32%), Gaps = 5/199 (2%)

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
           F       F M   D  +  +    AL++      S+   L  L   + P+        +
Sbjct: 373 FFVLIFLNFFMFTFDAIIQAMIFFTALYYLILSKKSLLNYLKDLLLVVDPSSI--FFYNI 430

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
            K +++  +          + +   +     P      ++  I+++IP  +P     + +
Sbjct: 431 TKSLKAIIICTLKRIYFYTMYIWLIFSFFQFPIIYVPTLMCMILSLIPVISPEILILIIV 490

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
             L          + L+    +++        +      +        L   + T G  G
Sbjct: 491 IHLWIIQKQKIISIILFVVFFIYL---YFTTTIYTEIPYIHAWLVSLSLFLSITTFGSKG 547

Query: 328 LFIGPVLMALIAVIWKESI 346
           + +GP + ++  +I + ++
Sbjct: 548 VILGPFIASIPLIIHQIAV 566


>gi|307728406|ref|YP_003905630.1| hypothetical protein BC1003_0335 [Burkholderia sp. CCGE1003]
 gi|307582941|gb|ADN56339.1| hypothetical protein BC1003_0335 [Burkholderia sp. CCGE1003]
          Length = 361

 Score = 37.9 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 55/142 (38%), Gaps = 3/142 (2%)

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VPSHVALGVITAIMAMIPG 256
              + +    +++ +      I A+  G+ L     +    +P    L +IT I+ ++P 
Sbjct: 211 RVTRFADAFRRIVFAQVKISAINAVFTGIFLLVVLPIFHDQLPLSKTLVLITFIVGLLPV 270

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
              +    + + + +  + F A  + L   I +  ++  L   +VGG I+         +
Sbjct: 271 IGNLISNTIIVAVALSVS-FPAAVMSLAFLILIHKLEYFLNARIVGGQIEARAWELLVAM 329

Query: 317 VGGVRTMGLLGLFIGPVLMALI 338
           +      GL G+   P+  A I
Sbjct: 330 LVMEAAFGLPGVIAAPIFYAYI 351


>gi|297521843|ref|ZP_06940229.1| putative permease perM [Escherichia coli OP50]
          Length = 173

 Score = 37.9 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/186 (10%), Positives = 64/186 (34%), Gaps = 15/186 (8%)

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            +  +  + +M   ++P+ +    G+  ++++   +   +     +PR    +       
Sbjct: 3   LVVFVGILLLMAFVVLPIAW--QQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAGIID 60

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +     S   ++             D + + +    +  L   + ++ + + +FF  +D
Sbjct: 61  AMAENMRSRMLTM------------GDSVVKISLASLVGLLTIAVYLVLVPLMVFFLLKD 108

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +  +          ++ + + + I +   G  +  I  G+     + L G+  
Sbjct: 109 KEQMLNAVRRVLPRNRGLAG-QVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNY 167

Query: 241 HVALGV 246
            + L V
Sbjct: 168 SLLLAV 173


>gi|323454850|gb|EGB10719.1| hypothetical protein AURANDRAFT_62168 [Aureococcus anophagefferens]
          Length = 1522

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 51/164 (31%), Gaps = 17/164 (10%)

Query: 28   KGFFAPVLSALIIGFTSWPIYSSFI-----SKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
              + A    A ++    +  Y          +K+      AV  ++ +  +FI P++ L 
Sbjct: 935  APYIAA--WAGVLCVVLYCFYYLLTTGSQFGRKKTRLWLEAVTFSLVLYFVFIKPIVILL 992

Query: 83   YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
               ++     V+  V   +  +  PR+  + P    +     +        ++      +
Sbjct: 993  ISVIM--PSFVASSVDKARSPLDHPRYPFETPLPESSVFYLLRWHPELNGTRLADHVAAE 1050

Query: 143  TNGIDFIP-------RFASRFGMIFLD-YCLSIIFMIIALFFFY 178
              G            R A   G         +++  +IAL F  
Sbjct: 1051 ATGAPRSARECLTDVRVAEIHGAAIPRTSGTAVVLALIALLFGL 1094


>gi|53724065|ref|YP_104584.1| hypothetical protein BMA3096 [Burkholderia mallei ATCC 23344]
 gi|52427488|gb|AAU48081.1| membrane protein, putative [Burkholderia mallei ATCC 23344]
          Length = 344

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 84/272 (30%), Gaps = 10/272 (3%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +A V +    +  L  L    +   +  V          + +              E  +
Sbjct: 71  VAVVLLSTAIVGGLAGLTIAVIEHFEHTVPNAQNLLGQVMQIVDQ-----ARTRTPEWIS 125

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L             L    +D + +        F         +I A+     D   +
Sbjct: 126 NLLPVDAEQMRAKAAGLMNRHMDQLQQGGKSVARGFGHVL--FGMIIGAMIAIGIDRHKL 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            Q L +        +     RIV   I+ + L     AI   L++    +   +P    L
Sbjct: 184 RQPLSTALVARISRFSDAFRRIVFAQIKISALNAFFTAIY--LLVALPIFHQRLPLSKTL 241

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            ++T I  ++P    +    + + + +  ++  A    ++  + +  ++  L   ++GG 
Sbjct: 242 VLVTFIAGLLPVVGNLISNTLIVAVSLSVSMGTAIASLVF-LVVIHKLEYFLNAKIIGGQ 300

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
           I+         ++      G+ G+   P+  A
Sbjct: 301 IESRAWELLLAMLVMEAAFGVPGVIAAPIFYA 332


>gi|53718183|ref|YP_107169.1| hypothetical protein BPSL0544 [Burkholderia pseudomallei K96243]
 gi|52208597|emb|CAH34533.1| putative membrane protein [Burkholderia pseudomallei K96243]
          Length = 344

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 84/272 (30%), Gaps = 10/272 (3%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +A V +    +  L  L    +   +  V          + +              E  +
Sbjct: 71  VAVVLLSTAIVGGLAGLTIAVIEHFEHTVPNAQNLLGQVMQIVDQ-----ARTRTPEWIS 125

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L             L    +D + +        F         +I A+     D   +
Sbjct: 126 NLLPVDAEQMRAKAAGLMNRHMDQLQQGGKSVARGFGHVL--FGMIIGAMIAIGIDRHKL 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            Q L +        +     RIV   I+ + L     AI   L++    +   +P    L
Sbjct: 184 RQPLSTALVARISRFSDAFRRIVFAQIKISALNAFFTAIY--LLVALPIFHQRLPLSKTL 241

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            ++T I  ++P    +    + + + +  ++  A    ++  + +  ++  L   ++GG 
Sbjct: 242 VLVTFIAGLLPVVGNLISNTLIVAVSLSVSMGTAIASLVF-LVVIHKLEYFLNAKIIGGQ 300

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
           I+         ++      G+ G+   P+  A
Sbjct: 301 IESRAWELLLAMLVMEAAFGVPGVIAAPIFYA 332


>gi|299115825|emb|CBN74388.1| Ankyrin Repeat Transient Receptor Potential Channel [Ectocarpus
           siliculosus]
          Length = 1067

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWP--IYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           LV  +F+ G F  VL+  I+   SWP  ++  F+ +   S    A    V++ C   +PL
Sbjct: 844 LVLFWFVSGLF-AVLAGSILWIISWPRGVFMFFLRRSSHSGRVSASAQLVALFCGAAMPL 902

Query: 79  LFL 81
           L L
Sbjct: 903 LML 905


>gi|21241766|ref|NP_641348.1| membrane protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|21107138|gb|AAM35884.1| membrane protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 375

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 58/154 (37%), Gaps = 12/154 (7%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS-TFLAVIATVSVMCLFIVPLLFLFYY 84
            ++ +  P+ ++L+ G  +W +      + +        +I  +++   FI+PLLFL   
Sbjct: 7   VIREYAIPLGASLLAGIVTWSLMLWLFRRMQGRDYRRARIIRVITLPAAFILPLLFLGI- 65

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
              E   L  K + A QH       L  +      + L  + ++  ++  + S     ++
Sbjct: 66  -ATEATPLAGKALAAVQH-------LLHLGIVGCVTWLLVRAVAAGEAAILRSNPIEVSD 117

Query: 145 GIDF--IPRFASRFGMIFLDYCLSIIFMIIALFF 176
            +    I         + +   + +   ++ L F
Sbjct: 118 NLTARRIQTQTRVLSRVLMGTVILLGISVVLLTF 151


>gi|78046585|ref|YP_362760.1| putative small-conductance mechanosensitive channel [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|325925357|ref|ZP_08186759.1| small-conductance mechanosensitive channel [Xanthomonas perforans
           91-118]
 gi|78035015|emb|CAJ22660.1| putative small-conductance mechanosensitive channel [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|325544235|gb|EGD15616.1| small-conductance mechanosensitive channel [Xanthomonas perforans
           91-118]
          Length = 375

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 58/154 (37%), Gaps = 12/154 (7%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS-TFLAVIATVSVMCLFIVPLLFLFYY 84
            ++ +  P+ ++L+ G  +W +      + +        +I  +++   FI+PLLFL   
Sbjct: 7   VIREYAIPLGASLLAGIVTWSLMLWLFRRMQGRDYRRARIIRVITLPAAFILPLLFLGV- 65

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
              E   L  K + A QH       L  +      + L  + ++  ++  + S     ++
Sbjct: 66  -ATEATPLAGKALAAVQH-------LLHLGIVGCVTWLLVRAVAAGEAAILRSNPIEVSD 117

Query: 145 GIDF--IPRFASRFGMIFLDYCLSIIFMIIALFF 176
            +    I         + +   + +   ++ L F
Sbjct: 118 NLTARRIQTQTRVLSRVLMGTVILLGISVVLLTF 151


>gi|220924709|ref|YP_002500011.1| putative permease [Methylobacterium nodulans ORS 2060]
 gi|219949316|gb|ACL59708.1| putative permease [Methylobacterium nodulans ORS 2060]
          Length = 351

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 71/220 (32%), Gaps = 15/220 (6%)

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFAS---RFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           S   S      T LKT  + ++   A      G         I+F ++          ++
Sbjct: 128 SWALSFLPEESTELKTASVTWLREHAGQLRSIGQDVWHALFHIVFGLVIGGMV-----AV 182

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA----GVPS 240
           S++  +              R++    R+       I+     +      +A    G+P 
Sbjct: 183 SRETGTGERGPLVHALTNRLRLLAAAFRNVVFAQVRISALNTALTALYLLVAVPWLGIPL 242

Query: 241 HVA--LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
                + V+T +  ++P    +    V + + +  +   A     +  + +  ++  L  
Sbjct: 243 PFTKTMVVVTFVTGLLPVIGNLISNTVIVLVSLSVSPALAVASLAF-LVVIHKLEYFLNA 301

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
            ++GG I          ++      G+ GL   P+  A +
Sbjct: 302 RVMGGQIHARAWEILVAMLIMEALFGIPGLVAAPIFYAYL 341


>gi|319762110|ref|YP_004126047.1| hypothetical protein Alide_1398 [Alicycliphilus denitrificans BC]
 gi|330826059|ref|YP_004389362.1| hypothetical protein Alide2_3518 [Alicycliphilus denitrificans
           K601]
 gi|317116671|gb|ADU99159.1| hypothetical protein Alide_1398 [Alicycliphilus denitrificans BC]
 gi|329311431|gb|AEB85846.1| protein of unknown function UPF0118 [Alicycliphilus denitrificans
           K601]
          Length = 361

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 46/139 (33%), Gaps = 3/139 (2%)

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            +   +IV            + A+   L++    W  G+P   AL  +T +  ++P    
Sbjct: 216 GEAFRQIVAAQFWIAAFNTLLTALF--LLVVLPLWDLGLPYTPALITLTFLAGLVPIVGN 273

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           +   AV   + +  +   A     +  I +   +  +   +VG    +        +   
Sbjct: 274 LLCNAVITLVGLSVSPIAAVACLAF-LILIHKAEYVINAKVVGKRTHMGVWELLSVMFVT 332

Query: 320 VRTMGLLGLFIGPVLMALI 338
               G  GL   P+  A +
Sbjct: 333 EAVFGPAGLVAAPLFYAYL 351


>gi|292488269|ref|YP_003531151.1| hypothetical protein EAMY_1793 [Erwinia amylovora CFBP1430]
 gi|292899464|ref|YP_003538833.1| membrane protein [Erwinia amylovora ATCC 49946]
 gi|291199312|emb|CBJ46429.1| putative membrane protein [Erwinia amylovora ATCC 49946]
 gi|291553698|emb|CBA20743.1| UPF0118 membrane protein MTH_1211 [Erwinia amylovora CFBP1430]
 gi|312172408|emb|CBX80665.1| UPF0118 membrane protein MTH_1211 [Erwinia amylovora ATCC BAA-2158]
          Length = 339

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 40/331 (12%), Positives = 103/331 (31%), Gaps = 19/331 (5%)

Query: 18  FIILVSLYFLKGF-FAPVLSALIIGF----TSWPIYSSFISKKEESSTFLAVIATVSVMC 72
            ++  +LY +      P   A  I +       P+    + K   +     +  +V ++ 
Sbjct: 18  LLVCAALYAIFPLRLLPCFLAGFIVYETILALTPLVERLV-KGPVARWISIMFLSVMLIL 76

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
             +  +  L  + + +++   +    A++        LS +      S++          
Sbjct: 77  ALVTGITKLIGFMLNDLQNPAAFHATASKLLEDAQHTLSPVITRYLPSDIDELQTRIIGW 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           L+      ++T G +    FA+    + L   +S+   +         G      L    
Sbjct: 137 LREHL-VVVQTFGRNAAHTFATMLIGMLLGAIISLRISV---------GKRPDAPLKEAM 186

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                        +V   I+ + +   +      L      +    P    + V+T I  
Sbjct: 187 LDRLSILAAAFHNVVFAQIKVSLVNTVLTGAF--LFGVLPLFGLHFPFAKTVVVLTFIAG 244

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++P    +    V + + +  ++  A    ++  + +  ++  +   + G  I       
Sbjct: 245 LLPIIGNLISNTVIVLIGLSISLEAALIALVY-LVLIHKLEYFINARIFGSRISAKTWEI 303

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              ++      GL G+   PV  A +    +
Sbjct: 304 LLAMLVFESAFGLAGVIAAPVYYAYLKAELR 334


>gi|317969774|ref|ZP_07971164.1| permease [Synechococcus sp. CB0205]
          Length = 351

 Score = 37.5 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 35/264 (13%), Positives = 89/264 (33%), Gaps = 5/264 (1%)

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS 111
             +   +      I+   ++ + ++    +    + + +EL+ ++  A Q  + + R   
Sbjct: 47  QERLRCNRPLALFISLGGLLVVVVLTTAVVVPPFVAQFQELLRQLPAALQLAMQLLRRTL 106

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
           D    M       + L     L   S +   T G   +   A   G   ++    +   +
Sbjct: 107 DQSSQMLYGREALQWLQKSW-LSQGSGSLDPTEGFLKLLGIAGNLGSGLVELLFVVAVSL 165

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
           +          +  +    L    +   ++ +  +  + + S   G+ I ++  G++   
Sbjct: 166 MVA----IQPQAYREIAILLVPSFYRRRFRDVLTLCGEGLSSWMAGVLISSLCVGVLAAI 221

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
              L GV    A  ++  ++ +IP   P   T   + + +  +   A  + L   +   I
Sbjct: 222 GLSLLGVKLVAANALLAGLLNIIPNIGPTLSTVFPMSVALLDSPVKALLVLLLYVVIQHI 281

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFG 315
               + P ++   +KL    T   
Sbjct: 282 ESYLITPSVMHHQVKLLPGLTLIA 305


>gi|222055293|ref|YP_002537655.1| hypothetical protein Geob_2200 [Geobacter sp. FRC-32]
 gi|221564582|gb|ACM20554.1| conserved hypothetical protein [Geobacter sp. FRC-32]
          Length = 329

 Score = 37.5 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 44/330 (13%), Positives = 101/330 (30%), Gaps = 16/330 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +  +   L  L+    P + A +  +    +         ++    A    + V+ + ++
Sbjct: 10  LLAVSAVLLVLRFHLLPAVFAGLAVYV---LTLKLAGHLPKNMNRFAHKVALGVVVICVI 66

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             L      +         +       +     L        A  L T      + L  +
Sbjct: 67  TCLTSAGAAIWSFVGSSHGIAALLATVVDTLDSLRRTLPDSVAEVLPTTIEGLNEQLVEI 126

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                  N +  I         +F    L ++   +A    + +       + +L   L 
Sbjct: 127 LR-----NHVQKISVVGMEGIKVFAHILLGMVVGGMAAVHHFIEHEKSPPFIGALRSRL- 180

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGVITAIMAMI 254
                K++    KV+ +      + +I   L L     L GV  P    L ++T  + M+
Sbjct: 181 ----GKLATAFDKVVFAQVKISGLNSIFTALYLLVVLPLFGVHLPMASLLVLLTFAVGML 236

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    +    V + + +  +        ++  + +   +  +   +VG  ++        
Sbjct: 237 PVVGNLISNTVIVVISLGVSPLVGIASLVF-LVLIHKAEYFMNARIVGHEVQATAWELLC 295

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            ++      G+ GL   PV+ A +    KE
Sbjct: 296 AMLLLEAMFGVAGLVAAPVVYAWLKAEVKE 325


>gi|282890914|ref|ZP_06299430.1| hypothetical protein pah_c030o012 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499198|gb|EFB41501.1| hypothetical protein pah_c030o012 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 130

 Score = 37.5 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 10/100 (10%), Positives = 31/100 (31%)

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
           +      +  + + + L  +T ++ +IP    +        + +  +        +    
Sbjct: 1   MALIGLAIIQIDNLIFLAFLTFLLGLIPYLGTLIAIIPPTLVGLTSSYLMGLTAAIVMTS 60

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
              I    + P ++   + +  L     +V      G+ G
Sbjct: 61  IHLIEANLITPHVMMKRLDVHPLTIILLIVASFSLFGVTG 100


>gi|162447684|ref|YP_001620816.1| integral membrane protein [Acholeplasma laidlawii PG-8A]
 gi|161985791|gb|ABX81440.1| integral membrane protein [Acholeplasma laidlawii PG-8A]
          Length = 355

 Score = 37.5 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 42/332 (12%), Positives = 114/332 (34%), Gaps = 17/332 (5%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P++ A  + +   P+ +     K     +L ++   +++ +F V L++      ++  
Sbjct: 39  LLPLIIAFTLAYILNPLINLLQKYKIPR--WLGILIVYTIVTIFFVYLIWGVLKPAVDSI 96

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
             +S  +      I     +       +   L  + +    +    S             
Sbjct: 97  GNISVGIENIMIEIGDILNVDTTSMSSYIIGLVDEIIIEITNFFTAS------------G 144

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
               +     +   + I+  II L  F R    I + L    +    ++ + +   +   
Sbjct: 145 GTVGQVWNTIISGAVVIVVGIIFLLNFPRIRQRIKEYLTITVKPKTVSFVRTLDNELTNY 204

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP--GGAPISFTAVSIY 268
           + +  +   I A+  G ++     +      V + ++ A++++IP  GG         I 
Sbjct: 205 LVAEIIIAAIQALEYGTLMLI-LSIFFPEFLVFVPLVAAVLSLIPYFGGYFSILFTAVIV 263

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           + +    +    + ++  I   +    + P +    + L  + T   ++ G    G++G 
Sbjct: 264 MTVPSAAYGMIAIGIFMLIFPQLDAYVINPKIYQTKLNLNPISTIAFVLLGQAFFGIIGA 323

Query: 329 FIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
            +      ++ V  +     IK + +KI+ + 
Sbjct: 324 ILSVPFQVVLEVTMQYYKDNIKSSIKKINEHL 355


>gi|294627868|ref|ZP_06706447.1| membrane protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|294664613|ref|ZP_06729952.1| membrane protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292597782|gb|EFF41940.1| membrane protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292605614|gb|EFF48926.1| membrane protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 375

 Score = 37.5 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 58/154 (37%), Gaps = 12/154 (7%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS-TFLAVIATVSVMCLFIVPLLFLFYY 84
            ++ +  P+ ++L+ G  +W +      + +        +I  +++   FI+PLLFL   
Sbjct: 7   VIREYAIPLGASLLAGIVTWSLMLWLFRRMQGRDYRRARIIRVITLPAAFILPLLFLGI- 65

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
              E   L  K + A QH       L  +      + L  + ++  ++  + S     ++
Sbjct: 66  -ATEATPLAGKALAAVQH-------LLHLGIVGCVTWLLVRAVAAGEAAILRSNPIEVSD 117

Query: 145 GIDF--IPRFASRFGMIFLDYCLSIIFMIIALFF 176
            +    I         + +   + +   ++ L F
Sbjct: 118 NLTARRIQTQTRVLSRVLMGTVILLGISVVLLTF 151


>gi|58425193|gb|AAW74230.1| membrane protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 392

 Score = 37.5 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 56/154 (36%), Gaps = 12/154 (7%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS-TFLAVIATVSVMCLFIVPLLFLFYY 84
            ++ +  P  ++L+ G  +W +      + +        +I  +++   FI+PLLFL   
Sbjct: 24  VIREYAIPFGASLLAGIVTWSLMLWLFRRMQGRDYRRARIIRVITLPAAFILPLLFLGI- 82

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
              E   L  K + A QH       L  +      +    + ++  ++  + S     ++
Sbjct: 83  -ATEATPLAGKALAAVQH-------LLHLGIVGCVTWFLVRVVAAGEAAILRSNPIEVSD 134

Query: 145 GIDF--IPRFASRFGMIFLDYCLSIIFMIIALFF 176
            +    I         + +   + +   ++ L F
Sbjct: 135 NLTARRIQTQTRVLSRVLMGTVILLGISVVLLTF 168


>gi|94314820|ref|YP_588029.1| hypothetical protein Rmet_5901 [Cupriavidus metallidurans CH34]
 gi|93358672|gb|ABF12760.1| conserved hypothetical protein; putative permease [Cupriavidus
           metallidurans CH34]
          Length = 364

 Score = 37.5 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 26/289 (8%), Positives = 79/289 (27%), Gaps = 24/289 (8%)

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
           +       +AV    +++ L +   ++     +      + +++  +   I   R     
Sbjct: 82  RLHSRRDAIAVAILSTIILLVLTGSIWALIRFISGDGNTLDRLLDHSADIIDRSR----- 136

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
                     + +L +       +             R  +      +   + +I   + 
Sbjct: 137 ---AQLPAWLSDYLPNGVDELATTLISALREHAQMAQRLGADILRTLVHILVGLIIGAMI 193

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
             +         + +               +R +             I++   ++     
Sbjct: 194 ALY---------RAISRPNRRPLALALVDRARTLQTAFSQFIFAQIQISLVNTILTAIYL 244

Query: 234 WLA------GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
            +        +P    L  IT I  ++P    +      +   +  ++  A    L+  +
Sbjct: 245 LVLLPLFHQHLPLSKTLVAITFIAGLLPVLGNLISNTAIVIASLSVSLPIAVVSLLF-LV 303

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            +  ++  L   ++G  I          ++      G+ G+  GP+  A
Sbjct: 304 LIHKLEYFLNARIIGARIHAAAWELLTVMLVMETLYGIPGVIAGPIFYA 352


>gi|260549690|ref|ZP_05823907.1| permease [Acinetobacter sp. RUH2624]
 gi|260407207|gb|EEX00683.1| permease [Acinetobacter sp. RUH2624]
          Length = 338

 Score = 37.5 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 67/198 (33%), Gaps = 4/198 (2%)

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                      L   +++I  +I        GF   +    + + L     +K+S     
Sbjct: 140 VTTLKNASSDILHNFVTMIMGLIIGILVAIHGFH-RRTPQPIFKSLLIQRIQKLSISFRN 198

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGVITAIMAMIPGGAPISFTAVSI 267
           V+ +      I  +   L       + GV  P    L ++T +  +IP    +    ++ 
Sbjct: 199 VVFAQIKISAINTLLFILFAFVILPIWGVHLPFAKTLTILTFLFGLIPILGNLISNTLTF 258

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
              +  ++  A    L+  + +  ++  +   ++G  I          ++      GL G
Sbjct: 259 IAALTVSLGLAGVALLY-LVLVHKLEYFINAKIIGHKINANAWEILLAMLIFESIFGLGG 317

Query: 328 LFIGPVLMALIAVIWKES 345
           L   P+  A + +  K++
Sbjct: 318 LIAAPIFYAYLKLELKDA 335


>gi|76811352|ref|YP_332191.1| hypothetical protein BURPS1710b_0778 [Burkholderia pseudomallei
           1710b]
 gi|254187775|ref|ZP_04894287.1| putative membrane protein [Burkholderia pseudomallei Pasteur 52237]
 gi|76580805|gb|ABA50280.1| putative membrane protein [Burkholderia pseudomallei 1710b]
 gi|157935455|gb|EDO91125.1| putative membrane protein [Burkholderia pseudomallei Pasteur 52237]
          Length = 344

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 83/272 (30%), Gaps = 10/272 (3%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +A V +    +  L  L    +   +  V          + +              E  +
Sbjct: 71  VAVVLLSTAIVGGLAGLTIAVIEHFEHTVPNAQNLLGQVMQIVDQ-----ARTRTPEWIS 125

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L             L    +D + +        F         +I A+     D   +
Sbjct: 126 NLLPVDAEQMRAKAAGLMNRHMDQLQQGGKSVARGFGHVL--FGMIIGAMIAIGIDRHKL 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            Q L +        +     RIV   I+ + L     AI   L++    +   +P    L
Sbjct: 184 RQPLSTALVARISRFSDAFRRIVFAQIKISALNAFFTAIY--LLVALPIFHQRLPLSKTL 241

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            ++T I  ++P    +    + + + +   +  A    ++  + +  ++  L   ++GG 
Sbjct: 242 VLVTFIAGLLPVVGNLISNTLIVAVSLSVGMGTAIASLVF-LVVIHKLEYFLNAKIIGGQ 300

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
           I+         ++      G+ G+   P+  A
Sbjct: 301 IESRAWELLLAMLVMEAAFGVPGVIAAPIFYA 332


>gi|283850583|ref|ZP_06367871.1| putative permease [Desulfovibrio sp. FW1012B]
 gi|283574154|gb|EFC22126.1| putative permease [Desulfovibrio sp. FW1012B]
          Length = 346

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 61/181 (33%), Gaps = 7/181 (3%)

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
            +S++   I +        S+S + +            + +R + +  R+       I+ 
Sbjct: 157 AISLLLAHIVVGLILGAILSLSAEAEPGSRRPLAGALAERARRISEAFRAVVFAQVRISA 216

Query: 224 GEGLVLGSAYWLA------GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFN 277
               +      +A       +P    L  +T ++ ++P    +    V + + +  +   
Sbjct: 217 LNTFLTFLYLLVALPAMGYHLPLAKTLVALTFVVGLLPVVGNLVSNTVIVIVSLSVSFAV 276

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           A     +  I +  ++  L   +VGG I          ++      GL GL   P+  A 
Sbjct: 277 AVWSLAF-LIAVHKLEYFLNARIVGGHIHARTWELLLAMLAMEAAFGLAGLVAAPIYYAY 335

Query: 338 I 338
           +
Sbjct: 336 L 336


>gi|166710864|ref|ZP_02242071.1| membrane protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 375

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 57/154 (37%), Gaps = 12/154 (7%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS-TFLAVIATVSVMCLFIVPLLFLFYY 84
            ++ +  P  ++L+ G  +W +      + +        +I  +++   FI+PLLFL   
Sbjct: 7   VIREYAIPFGASLLAGIVTWSLMLWLFRRMQGRDYRRARIIRVITLPAAFILPLLFLGI- 65

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
              E   L  K + A QH       L  +      + L  + ++  ++  + S     ++
Sbjct: 66  -ATEATPLAGKALAAVQH-------LLHLGIVGCVTWLLVRVVAAGEAAILRSNPIEVSD 117

Query: 145 GIDF--IPRFASRFGMIFLDYCLSIIFMIIALFF 176
            +    I         + +   + +   ++ L F
Sbjct: 118 NLTARRIQTQTRVLSRVLMGTVILLGISVVLLTF 151


>gi|92113077|ref|YP_573005.1| hydrophobe/amphiphile efflux-1 HAE1 [Chromohalobacter salexigens
           DSM 3043]
 gi|91796167|gb|ABE58306.1| Hydrophobe/amphiphile efflux-1 HAE1 [Chromohalobacter salexigens
           DSM 3043]
          Length = 1066

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 74/223 (33%), Gaps = 16/223 (7%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF--------IVP 77
               F   +L   +I F    + +   +    S   ++V+ T + + LF        +  
Sbjct: 343 VFHTFIEALLIVAVIVFIF--LQNWRTTIIAMSVVPVSVVGTFAGLYLFGFSINLLSLFA 400

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           ++      + +   +V  V    +    +P   + I      S           ++ I  
Sbjct: 401 MVLAIGIVVDDAILVVENVERLLEEDPDIPIRKAAITAMKEVSGPVIATSFIMAAVFIPV 460

Query: 138 ETFLKTNGIDFIPRFASRFG-MIFLDYCLSIIFMIIALFFFYRD----GFSISQQLDSLG 192
             FL         +FA      + +   +++ F       F +     G S   +  S  
Sbjct: 461 -AFLGGFTGQIYQQFALTIAISVAISAVVALTFTPAMSALFVKHKAQLGNSRLARAASTP 519

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
             LF  +++ ++R    V+R       +  +   +++G +YWL
Sbjct: 520 FRLFDRFFEWVTRGYMAVVRLLVKAWVLTLVLAAVIIGFSYWL 562


>gi|149567268|ref|XP_001505836.1| PREDICTED: similar to solute carrier family 5 (sodium/glucose
           cotransporter), member 10 [Ornithorhynchus anatinus]
          Length = 960

 Score = 37.1 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 9/66 (13%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           ++I+F + + +  L  F+  +L+  +I   +WP ++   ++  + ++       + +   
Sbjct: 576 FLIVFTLGIEILVLSFFYRSMLTVGLIALAAWPFFTQLWTR-AQRTSLSWAFFCLLLAVF 634

Query: 74  FIVPLL 79
            ++P++
Sbjct: 635 PLMPVV 640


>gi|207739683|ref|YP_002258076.1| permease transmembrane protein [Ralstonia solanacearum IPO1609]
 gi|206593065|emb|CAQ59971.1| putative permease transmembrane protein [Ralstonia solanacearum
           IPO1609]
          Length = 271

 Score = 37.1 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 54/152 (35%), Gaps = 5/152 (3%)

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI-GEGLVLGSAYWLAGVPSHVALGV 246
           L +   H           +V   ++ + L   + AI   G+V         VP   +L +
Sbjct: 113 LSAALLHRLGRLETAFEAVVFAQVKISALNTALAAIYLMGVVPALGLH---VPYSKSLVL 169

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +T +  +IP    +      + + +  ++  A     +  + +  ++  +   ++G  I 
Sbjct: 170 LTFVAGLIPVAGNLISNTAIVLMSVAVSLELAVGSLAF-LVIVHKLEYFVNARIIGSRID 228

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
                    L+      G+ G+   PVL A +
Sbjct: 229 ARAWELILALIVMEALFGVGGVIAAPVLYAYL 260


>gi|294339407|emb|CAZ87763.1| putative sensory histidine kinase in two-component regulatory
           system [Thiomonas sp. 3As]
          Length = 361

 Score = 37.1 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 7/33 (21%), Positives = 16/33 (48%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
             +  FF  V++A+++   ++PI      + E 
Sbjct: 76  LLMSPFFGTVVTAILLSLVTYPIMRRLTRRLEN 108


>gi|307171848|gb|EFN63503.1| Rhomboid family member 1 [Camponotus floridanus]
          Length = 925

 Score = 37.1 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 42/133 (31%), Gaps = 32/133 (24%)

Query: 156 FGMIFLDY-CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS- 213
           F  IFL    + ++  ++  +F  RD   ++  L     +   A    ++  +    R+ 
Sbjct: 723 FTTIFLHAGIVHLVITLLIQYFLMRDLEKLTGSLRIALIYFIGALAGNLASAIFVPYRAE 782

Query: 214 --------TFLGMTII--------------AIGEGLVLGSAYWLAGV-----PSHVALGV 246
                     L   ++              A+ + +++     + G+           G 
Sbjct: 783 VGPAGAHFALLATLVVEVLHCWPMLKHPRRALSKLILILVGLLMLGILPWVDNYAHLFGF 842

Query: 247 ITAIM---AMIPG 256
           I   +   A++P 
Sbjct: 843 IFGFLAAYALMPF 855


>gi|289665167|ref|ZP_06486748.1| membrane protein [Xanthomonas campestris pv. vasculorum NCPPB702]
 gi|289669374|ref|ZP_06490449.1| membrane protein [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 375

 Score = 37.1 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 59/154 (38%), Gaps = 12/154 (7%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS-TFLAVIATVSVMCLFIVPLLFLFYY 84
            ++ +  P+ ++L+ G  +W +      + +        +I  +++   FI+PLLFL   
Sbjct: 7   VIREYAIPLGASLLAGIVTWSLMLWLFRRMQGRDYRRARIIRVITLPAAFILPLLFLGI- 65

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
              E   L  + ++A QH       L  +      + L  + ++  ++  + S     ++
Sbjct: 66  -ATEATPLAGRALVAVQH-------LLHLGIVGCVTWLLVRAVAAGEAAILRSNPIEVSD 117

Query: 145 GIDF--IPRFASRFGMIFLDYCLSIIFMIIALFF 176
            +    I         + +   + +   ++ L F
Sbjct: 118 NLTARRIQTQTRVLSRVLMGTVILLGISVVLLTF 151


>gi|257092730|ref|YP_003166371.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257045254|gb|ACV34442.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 584

 Score = 37.1 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 6/93 (6%)

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           I  I   +I +T   +     G  +      +L GV +     +     + +P  A ++ 
Sbjct: 94  IGTIAAGLIWATVGTVLFPPPGSDVQFFIGMYLVGVAATGMFTLSAYFWSFLPL-AGLTL 152

Query: 263 TAVSIYLLIKGNI-----FNATCLFLWGAIELF 290
             +S++LL  G         AT LF++  +   
Sbjct: 153 IPMSLWLLASGVTSLQIAGGATFLFVYIVLSNG 185


>gi|254432069|ref|ZP_05045772.1| conserved domain protein, putative [Cyanobium sp. PCC 7001]
 gi|197626522|gb|EDY39081.1| conserved domain protein, putative [Cyanobium sp. PCC 7001]
          Length = 335

 Score = 37.1 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 67/215 (31%)

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
           IP            ++    L    E     +G+  +            +  + ++ M +
Sbjct: 92  IPEVAARLASMAGRVAWLPRLDQSLERLASWDGLQPLGAQLLGMAGGAANTTVQMLLMGL 151

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
                  D  +  + + +L    +      +     + +     GMT+ A+   L+  + 
Sbjct: 152 LAILLAFDPATHRRLVIALTPRKWRQPMAGLLDECREALGGWLAGMTLSAVTVFLLTWAG 211

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
             L  VP  +   ++  ++  +P   P + T + + + +  +      + +   +     
Sbjct: 212 LVLLQVPLALLSALVCGLLTFVPTIGPTAATLLPLAVALLVSPTKVVQVLVLRLVLQNGE 271

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
              L P L+   + L         +     +GL G
Sbjct: 272 AFLLTPMLLSRTVNLLPTVALMAQLSLGTLLGLPG 306


>gi|326939660|gb|AEA15556.1| hypothetical protein CT43_CH1872 [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 229

 Score = 37.1 bits (85), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 37/99 (37%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +G  R++++ I+ + LY LK     +L   I+ F           K + +   +    
Sbjct: 9   RSRGFQRFLVLIIVALVLYALKSMINLILITFILTFLMDRFQRFISRKLKVNRKIVIACL 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
            + ++      L        +++ +L+ +  L  Q+   
Sbjct: 69  YIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQNPPD 107


>gi|325916517|ref|ZP_08178786.1| small-conductance mechanosensitive channel [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325537306|gb|EGD09033.1| small-conductance mechanosensitive channel [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 392

 Score = 37.1 bits (85), Expect = 4.8,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 74/209 (35%), Gaps = 23/209 (11%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS-TFLAVIATVSVMCLFIVPLLFLFYY 84
            ++ +  P+ +AL+ G  +W +      + +        +I  V++   FI+PLLFL   
Sbjct: 24  VIREYAIPLGAALLAGAVTWSLMLWLFRRMQGRDYRRARIIRVVTLPAAFILPLLFL--- 80

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
                  + ++ +     G+   + L  +      + L  + ++  ++  + S     ++
Sbjct: 81  ------RIATEAIPLEGKGLTALQSLLHVGIVGCITWLLVRAVAAGEAAILRSNPIEVSD 134

Query: 145 GIDF--IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            +    I         + +   + +   ++ L F         +Q+  +G+ L  +    
Sbjct: 135 NLTARRIQTQTRVLSRVVMGTVILLGISVVLLGF---------EQVRQIGKTLLASAG-- 183

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
           I  +V  +      G  I  +   L    
Sbjct: 184 IIGLVAGIAAKPVFGNLIAGLQIALTQPI 212


>gi|170691479|ref|ZP_02882644.1| conserved hypothetical protein [Burkholderia graminis C4D1M]
 gi|170143684|gb|EDT11847.1| conserved hypothetical protein [Burkholderia graminis C4D1M]
          Length = 361

 Score = 36.7 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 55/142 (38%), Gaps = 3/142 (2%)

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VPSHVALGVITAIMAMIPG 256
              + +    +++ +      I A+  G+ L     +    +P    L +IT I+ ++P 
Sbjct: 211 RVTRFADAFRRIVFAQVKISAINAVFTGIFLLVVLPMFHDQLPLSKTLVLITFIVGLLPV 270

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
              +    + + + +  + F A  + L   I +  ++  L   +VGG I+         +
Sbjct: 271 IGNLISNTIIVAVALSVS-FPAAVMSLAFLILIHKLEYFLNARIVGGQIEARAWELLVAM 329

Query: 317 VGGVRTMGLLGLFIGPVLMALI 338
           +      GL G+   P+  A I
Sbjct: 330 LVMEAAFGLPGVVAAPIFYAYI 351


>gi|209521306|ref|ZP_03270023.1| conserved hypothetical protein [Burkholderia sp. H160]
 gi|209498252|gb|EDZ98390.1| conserved hypothetical protein [Burkholderia sp. H160]
          Length = 361

 Score = 36.7 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 3/142 (2%)

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VPSHVALGVITAIMAMIPG 256
              + +    +++ +      + A+   + L     L    +P    L ++T I+ ++P 
Sbjct: 211 RVTRFADAFRRIVFAQVKISALNAVFTAIFLLVILPLFHDTLPLSKTLVLVTFIVGLLPV 270

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
              +    + + + +  + F A  + L   I +  ++  L   +VGG I+         +
Sbjct: 271 IGNLISNTIIVAVALSVS-FPAAIMSLVFLILIHKLEYFLNARIVGGQIEARAWELLIAM 329

Query: 317 VGGVRTMGLLGLFIGPVLMALI 338
           +      G+ G+   P+  A I
Sbjct: 330 LVMEAAFGIAGVIAAPIFYAYI 351


>gi|84622548|ref|YP_449920.1| membrane protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|122879060|ref|YP_199615.6| membrane protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188578439|ref|YP_001915368.1| membrane protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|84366488|dbj|BAE67646.1| membrane protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188522891|gb|ACD60836.1| membrane protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 375

 Score = 36.7 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 56/154 (36%), Gaps = 12/154 (7%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS-TFLAVIATVSVMCLFIVPLLFLFYY 84
            ++ +  P  ++L+ G  +W +      + +        +I  +++   FI+PLLFL   
Sbjct: 7   VIREYAIPFGASLLAGIVTWSLMLWLFRRMQGRDYRRARIIRVITLPAAFILPLLFLGI- 65

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
              E   L  K + A QH       L  +      +    + ++  ++  + S     ++
Sbjct: 66  -ATEATPLAGKALAAVQH-------LLHLGIVGCVTWFLVRVVAAGEAAILRSNPIEVSD 117

Query: 145 GIDF--IPRFASRFGMIFLDYCLSIIFMIIALFF 176
            +    I         + +   + +   ++ L F
Sbjct: 118 NLTARRIQTQTRVLSRVLMGTVILLGISVVLLTF 151


>gi|121603275|ref|YP_980604.1| hypothetical protein Pnap_0360 [Polaromonas naphthalenivorans CJ2]
 gi|120592244|gb|ABM35683.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2]
          Length = 356

 Score = 36.7 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 44/143 (30%), Gaps = 3/143 (2%)

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGVITAIMAM 253
                        +++ + F    + A    + L +   L GV  P    L  +T    +
Sbjct: 203 IRMRAGHFIEAFRQIVVAQFWIAAVNAFFTAVFLLAVLPLFGVHMPYIAELVTLTFFAGL 262

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP    +   +V   + +  +        ++  I +   +  +   ++G           
Sbjct: 263 IPIVGNLICNSVITLVGVSVSPAVGLACLVF-LILIHKTEYIINAKILGKQTNTAAWELL 321

Query: 314 FGLVGGVRTMGLLGLFIGPVLMA 336
             +  G    GL GL   P+  A
Sbjct: 322 AAMFVGEAVFGLPGLVAAPLYYA 344


>gi|322784973|gb|EFZ11744.1| hypothetical protein SINV_11671 [Solenopsis invicta]
          Length = 827

 Score = 36.7 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 56/153 (36%), Gaps = 20/153 (13%)

Query: 17  MFIIL----VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           +FI+L     ++ FL  F        I  F  W      I     S +   +  TV+V  
Sbjct: 500 VFIVLRNIETAVLFLACFILGTAWGYIESFLFW-----LIQDLGGSRSL--MGITVAVGG 552

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           +  +PLL L          ++SK+  AN   I    +   + G     + W   +   ++
Sbjct: 553 IAGIPLLAL-------SGPIISKIGHANVLFIGFVFYAIRLCGYSLIYDPWLTLI--FEA 603

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           L+ ++ +   T  + +  + ++      +   L
Sbjct: 604 LESVTTSLSFTAAVTYAAKLSTTSTDSSIQGLL 636


>gi|317969773|ref|ZP_07971163.1| hypothetical protein SCB02_09570 [Synechococcus sp. CB0205]
          Length = 333

 Score = 36.7 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 49/144 (34%), Gaps = 4/144 (2%)

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + + +L         + +     + +     GMT+ A    L+  +      VP  +  G
Sbjct: 164 RLVLALTPAHSRPLVQNLLTESRQALGGWLAGMTLSASVVFLLTWAGLAALKVPLALLSG 223

Query: 246 VITAIMAMIP--GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           +I  ++  +P  G    S   V++ LLI      A  + +   +        L P L+  
Sbjct: 224 LICGLLTFVPTIGPTLASLLPVAVSLLIS--PTLAVQVIVLRLVLQNGEAFLLTPLLLSR 281

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLG 327
            + L         +     +GL G
Sbjct: 282 TVNLLPTVALMAQLSLGALLGLPG 305


>gi|261416818|ref|YP_003250501.1| cell divisionFtsK/SpoIIIE [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373274|gb|ACX76019.1| cell divisionFtsK/SpoIIIE [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 1032

 Score = 36.7 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 35/115 (30%), Gaps = 23/115 (20%)

Query: 227 LVLGSAYWLAGVPSHVALGVITA-------------IMAMIPGGAPISFTAVSIYLLIKG 273
           + +   Y++      + LG +T                AM P      F  V++ +    
Sbjct: 31  VTMMVGYFVMLAGIVLLLGCVTLSIAGAKGNWLGDYFGAMFPEFMTFLFGRVAVVVFTAA 90

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
            +     + +            LRP L+   +    L      +  ++  G+ G+
Sbjct: 91  LVLWGLFIAIAS----------LRPKLLRFAVGASLLVVDLSFLMSLKNFGVRGV 135


>gi|302326684|gb|ADL25885.1| FtsK/SpoIIIE family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 1032

 Score = 36.7 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 35/115 (30%), Gaps = 23/115 (20%)

Query: 227 LVLGSAYWLAGVPSHVALGVITA-------------IMAMIPGGAPISFTAVSIYLLIKG 273
           + +   Y++      + LG +T                AM P      F  V++ +    
Sbjct: 31  VTMMVGYFVMLAGIVLLLGCVTLSIAGAKGNWLGDYFGAMFPEFMTFLFGRVAVVVFTAA 90

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
            +     + +            LRP L+   +    L      +  ++  G+ G+
Sbjct: 91  LVLWGLFIAIAS----------LRPKLLRFAVGASLLVVDLSFLMSLKNFGVRGV 135


>gi|87312143|ref|ZP_01094248.1| putative membrane protein-putative a permease [Blastopirellula
           marina DSM 3645]
 gi|87285171|gb|EAQ77100.1| putative membrane protein-putative a permease [Blastopirellula
           marina DSM 3645]
          Length = 358

 Score = 36.7 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 49/317 (15%), Positives = 110/317 (34%), Gaps = 22/317 (6%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           +    P   A+ + +   PI    + +   S  F AV   + V+ L +V + FL    + 
Sbjct: 39  RSILIPFTLAIFLNYLVAPIVDFSMVRLRFSK-FAAVSLALLVVGLALVSMSFLVLLVIQ 97

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            + +      +  Q    + R L  I    +A       +   +    L    +KTN I 
Sbjct: 98  SISDP----QMLRQLEFDLQRKLDAIVIQGYALADSWLGVQFDRPDSELIIAAIKTNLIS 153

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFY--RDGFSISQQLDSLGEHLFPAYWKKISR 205
            +P +A + G + +    S     I + F    RD + +S+ + +  +     Y      
Sbjct: 154 QMPSYAQQLGALLMSLVSSTALTTIFVGFMLAGRDPYKVSKGMYAEIDQKIRRYIATKFM 213

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGS-AYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
           I        ++ + ++ +    + G  A+ L  +PS       + I  ++P    I    
Sbjct: 214 ISAVTGILVWVCLAMMGMRLASLFGLMAFMLNFIPSVG-----SIIATLLPIPLAIV--- 265

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
                    +++    +          +   + P ++G  ++L  +     L       G
Sbjct: 266 ------DFDSVWMIVLVIGVPGAIQMTLGNVIEPKIMGDGLQLHPVTILLSLTFWGMLWG 319

Query: 325 LLGLFIGPVLMALIAVI 341
            +G+ +   + A + ++
Sbjct: 320 PVGMVLAVPITATLRIV 336


>gi|261820244|ref|YP_003258350.1| hypothetical protein Pecwa_0925 [Pectobacterium wasabiae WPP163]
 gi|261604257|gb|ACX86743.1| conserved hypothetical protein [Pectobacterium wasabiae WPP163]
          Length = 336

 Score = 36.7 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 47/308 (15%), Positives = 101/308 (32%), Gaps = 14/308 (4%)

Query: 40  IGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA 99
           I     P +   IS K      +AVI+T+ V  L ++    +              V + 
Sbjct: 42  IVNLLTPYFQRVISGKRARWIVVAVISTLVVSLLSLLFGSLVGLLMQEMKDTAAFNVRIG 101

Query: 100 NQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI 159
                   + +  +PG +  S    +H         +    L+  G  F+  F +    +
Sbjct: 102 YILNDIQQQIVHYLPGYLPVSIEELQHELLQWVQAHIV--MLQNMGKSFLHGFVTMLIGM 159

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
            L   +S+         +  D  +    L +               IV   ++ + +   
Sbjct: 160 VLGAIVSL---------YNVDQDTEKPLLKTELLRRVSLLSASFRNIVFAQVKISAVNTV 210

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNAT 279
           + AI   ++     +   +P    L V+T I  ++P    +   ++     +  ++  A 
Sbjct: 211 LSAIF--ILGALPLFGVHLPFAKTLVVLTFIFGLLPVIGNLISNSIVFLSGLSLSLPIAL 268

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              ++  + +   +  L   +VG  IK         ++      GL G+   P+  A + 
Sbjct: 269 VALVYLML-IHKFEYFLNAQIVGTRIKAHAWEILLAMLVFEAAFGLSGVIAAPIYYAYLK 327

Query: 340 VIWKESIM 347
              KE+ +
Sbjct: 328 SELKEASL 335


>gi|296135305|ref|YP_003642547.1| integral membrane sensor signal transduction histidine kinase
           [Thiomonas intermedia K12]
 gi|295795427|gb|ADG30217.1| integral membrane sensor signal transduction histidine kinase
           [Thiomonas intermedia K12]
          Length = 371

 Score = 36.7 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 6/33 (18%), Positives = 16/33 (48%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
             +  FF  +++A+++   ++PI      + E 
Sbjct: 86  LLMSPFFGTLVTAILLSLVTYPIMRRLTRRLEN 118


>gi|256425039|ref|YP_003125692.1| hypothetical protein Cpin_6082 [Chitinophaga pinensis DSM 2588]
 gi|256039947|gb|ACU63491.1| protein of unknown function DUF214 [Chitinophaga pinensis DSM 2588]
          Length = 802

 Score = 36.7 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 1/86 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGF-TSWPIYSSFISKKEESSTF 61
           E      GI + +   +  +       F   +  A +I    SW + + ++         
Sbjct: 704 EQRKKEIGIRKVLGASVSSIVAMLSADFVKLIAFAAVIAVPLSWLLMNKWLQSFAYRINI 763

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGML 87
             V+  +S++ + IV L  +    + 
Sbjct: 764 NWVVFVLSILLMVIVTLATVSIKAIR 789


>gi|159030482|emb|CAO91386.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 349

 Score = 36.7 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 91/296 (30%), Gaps = 15/296 (5%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
           +  +     +   +I         I   L +    + + ++L S +  A +        L
Sbjct: 45  WWQRHHLKRSHALIITLFGFFIGIIGIFLVIIPALVQQFRQLFSLLPQAIERLWGQVHRL 104

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
            D     +            ++L    +  +       I               LS++ +
Sbjct: 105 ED-----YLDPSLATVFPDFKTLLAQLQPLINQ-----IAGRGLSIFYGTFGIILSLLLI 154

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           I        D  +  +    L    + +  + I     + +++   G+    +   L   
Sbjct: 155 IALSLMILADPAAYYRCFLRLFPAFYRSRVRSILEHCDRDLKAWLKGIFCHMLIMTLGSC 214

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
               L G+P   +  ++   +  IP   P+  T +   + +    + +  + L  +    
Sbjct: 215 LGLSLIGIPLAFSQSILAGFLTFIPNLGPVLSTILPFSIALLEAPWQSWAVLLLYSSIYL 274

Query: 291 IVDKTLR----PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           ++         P L    +KL    T    +      G LGLF+  V + LIA IW
Sbjct: 275 LIQYFDHHPPLPILTVRSLKLLPACTLLAQLFFASIFGFLGLFLA-VPLTLIARIW 329


>gi|158294116|ref|XP_315403.4| AGAP005394-PA [Anopheles gambiae str. PEST]
 gi|157015415|gb|EAA11834.4| AGAP005394-PA [Anopheles gambiae str. PEST]
          Length = 904

 Score = 36.7 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 56/181 (30%), Gaps = 24/181 (13%)

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
            +LFF +R G      L     ++ P ++  I   V     S   G  +I++  G+    
Sbjct: 691 FSLFFEFRFGMLSISTLLLFVWYIIPYFY--IPEYVLNYKYSEQDGANLISLI-GITNTI 747

Query: 232 AYWLAG-------VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLW 284
                G       V      GV  A       GA I      I+              ++
Sbjct: 748 GMVGLGWLGDQPWVDVGKTYGVCLAFC-----GASIFVMPWLIWSY----PAMVVLCIIF 798

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           G         T  P ++   + L      +GLV  +   G +G  IGP +   +  +   
Sbjct: 799 GFTFASTFSFT--PIIMVRLVSLDDFTVAYGLV--LLVQG-IGSLIGPPIAGFLYDVTNR 853

Query: 345 S 345
            
Sbjct: 854 W 854


>gi|270160062|ref|ZP_06188718.1| putative membrane protein [Legionella longbeachae D-4968]
 gi|269988401|gb|EEZ94656.1| putative membrane protein [Legionella longbeachae D-4968]
          Length = 135

 Score = 36.7 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 2/85 (2%)

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAI 287
               W  GV   +  GV+ A++ +IP               LL KG+   A  +     I
Sbjct: 3   TLGLWFLGVEHAILFGVLAAVLILIPYIGIFIGSLLPALFVLLTKGSFGYAFAVIFIFII 62

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPT 312
              +    L P +VG  + +     
Sbjct: 63  VQVLEGNFLTPNIVGSQVSVNPFAV 87


>gi|330842972|ref|XP_003293440.1| hypothetical protein DICPUDRAFT_158300 [Dictyostelium purpureum]
 gi|325076225|gb|EGC30029.1| hypothetical protein DICPUDRAFT_158300 [Dictyostelium purpureum]
          Length = 1738

 Score = 36.7 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 61/206 (29%), Gaps = 25/206 (12%)

Query: 66   ATVSVMCLFIVP---------LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
             TV    L ++P         ++ + +Y +   +   + +       I V   +  I   
Sbjct: 1485 TTVGNYILVVLPTFLYFTAFTVVIVIWYMLSSAQSFNTNIYKRIYSMIFVINVILYIFFI 1544

Query: 117  MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
            +            P +        L       I           L   +   F+      
Sbjct: 1545 IIVVVFNFTQEDDPPTCGGRLSITLDQTRPQNIVSILYAVLQAVLSLIIGFAFIYY---- 1600

Query: 177  FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
                G ++ ++L  L  ++ PA  K+  R +   I  +  G  +  I   +++       
Sbjct: 1601 ----GHAVYKKLRGLTSNVSPAAEKQKKRTIQMAIICSA-GFVLHCIFIIILVSVN---- 1651

Query: 237  GVPSHVALGVITAIMA-MIPGGAPIS 261
              PS++    I  I+  +IP      
Sbjct: 1652 --PSNIVFSFICLIITEIIPVITLFV 1675


>gi|307294220|ref|ZP_07574064.1| putative ABC transporter permease [Sphingobium chlorophenolicum
           L-1]
 gi|306880371|gb|EFN11588.1| putative ABC transporter permease [Sphingobium chlorophenolicum
           L-1]
          Length = 479

 Score = 36.7 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 44/103 (42%), Gaps = 8/103 (7%)

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                RFG +   + L ++  ++ +F  Y    +++++ +     L             +
Sbjct: 119 SSLLVRFGQLTPAFVLQVVAPLLLIFLGY---GALARETERGTLRLLMLQGASR----GQ 171

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAY-WLAGVPSHVALGVITAIM 251
           V+R   L + I+A+  G+     +  +AG P  +AL ++T  +
Sbjct: 172 VVRGKLLALGIVALLAGMPAMVGFVLIAGQPGALALPMLTIAL 214


>gi|253687091|ref|YP_003016281.1| hypothetical protein PC1_0690 [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753669|gb|ACT11745.1| conserved hypothetical protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 336

 Score = 36.7 bits (84), Expect = 5.9,   Method: Composition-based stats.
 Identities = 49/308 (15%), Positives = 105/308 (34%), Gaps = 14/308 (4%)

Query: 40  IGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA 99
           I     P +   IS K      +AVI+T+ V  L ++    L    M EMK+  +  V  
Sbjct: 42  IVNLLTPYFQRVISGKRARWIVVAVISTLVVSLLSLL-FGSLVGLLMQEMKDTAAFNVRI 100

Query: 100 NQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI 159
                 + + ++    G     +        Q ++      L+  G  F+  F +    +
Sbjct: 101 GYILNDIQQQVAHYLPGYLPVSIEELQRELLQWVQAHI-VMLQNMGKSFLHGFVTMLIGM 159

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
            L   +S+         +  D  +    L +               IV   ++ + +   
Sbjct: 160 VLGAIVSL---------YNVDQDTEKPLLKAELLRRVTLLSASFRNIVFAQVKISVVNTV 210

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNAT 279
           + AI   ++         +P    L V+T +  ++P    +   ++     +  ++  A 
Sbjct: 211 LSAIF--ILGALPLCGIHLPFAKTLVVLTFVFGLLPVIGNLISNSIVFLSGLSLSLPIAL 268

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              ++  + +  ++  L   +VG  IK         ++      GL G+   P+  A + 
Sbjct: 269 VALVYLML-IHKLEYFLNAQIVGTRIKAHAWEILLAMLVFEAAFGLAGVIAAPIYYAYLK 327

Query: 340 VIWKESIM 347
              KE+ +
Sbjct: 328 SELKEASL 335


>gi|78184847|ref|YP_377282.1| hypothetical protein Syncc9902_1274 [Synechococcus sp. CC9902]
 gi|78169141|gb|ABB26238.1| conserved hypothetical protein [Synechococcus sp. CC9902]
          Length = 359

 Score = 36.7 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 34/268 (12%), Positives = 90/268 (33%), Gaps = 7/268 (2%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP-RW 109
              ++    +   ++    ++ +F V L  +    + E   L+ ++  A Q  + +   W
Sbjct: 46  LRERRPMDRSLALLLCLGGLLTIFTVILTVVIPPFLEEFAVLLQQLPKAAQTLLGLLMDW 105

Query: 110 LSDIPGGMWA----SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           +  I   ++     S L    +S P  L    ++     G   +        +      L
Sbjct: 106 IDGISQAIYGVDSPSNLDEIGVSDPSKLVPNGQSIAVGLGSGALGLLGLAGNLGNALLRL 165

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
             +  +  +       +        L    +     ++  +  + + S  +G+ I ++  
Sbjct: 166 LFVIAVALMVSVQPQAYRGVG--LQLIPSFYRRRAAEVLDLCGQALSSWMVGVLISSLAV 223

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
             + G A  L GV   +A  ++  ++ +IP   P   T   + + +    + +  +    
Sbjct: 224 SALCGIALSLLGVKLVLANALLAGLLNIIPNVGPTMSTVFPMAVAVLDAPWKSIAVLGAY 283

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTF 313
            +   +    + P ++   +KL    T 
Sbjct: 284 VVIQNMESYVITPSVMHHQVKLLPGLTL 311


>gi|229552395|ref|ZP_04441120.1| conserved hypothetical protein [Lactobacillus rhamnosus LMS2-1]
 gi|229314261|gb|EEN80234.1| conserved hypothetical protein [Lactobacillus rhamnosus LMS2-1]
          Length = 913

 Score = 36.7 bits (84), Expect = 6.2,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 35/165 (21%)

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                + I  ++   + S F G    A+G      +A+++AGVP+     V+ +I+ +IP
Sbjct: 599 LGQVGELIESVIGGTVGSAFYGTVTTAVG----GFAAWFIAGVPA----TVLDSIVGIIP 650

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--------------FIVDKTLRPF-- 299
               I+    +  L   G I       + G+                   VD  +     
Sbjct: 651 IVGWIANGGNAAELGWVGGIT-GWLTGIVGSTVGAYYGATMAPGLSKDGKVDAVVSGVAL 709

Query: 300 --LVGGPIKLPFLPTFFGLVGGVRTMGLLGLF--------IGPVL 334
              +GG I             G+   G+ G+         +GP++
Sbjct: 710 GSTIGGLIGHTLSNWLISYTIGMIVFGIAGVIVVAAGFLGLGPIV 754


>gi|262278253|ref|ZP_06056038.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258604|gb|EEY77337.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 338

 Score = 36.4 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 91/281 (32%), Gaps = 8/281 (2%)

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
               + L IV +  + ++    +  +V  +     H I      + +      S+    +
Sbjct: 61  IFISILLSIVTISLIGFFITSLISFVVYDLKGVGLHSINTKVDQTLLHLQAEISKYLPGY 120

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +    +           + +  +   +S      +   + +I  I+     +       +
Sbjct: 121 IPDSVTDLKDEIFAFMKDNVTTLKNASSDILHNLVTMVMGLIIGILVAIHGFH-----RR 175

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVAL 244
               + + L     +K+S     V+ +      I  +   L       L GV  P    L
Sbjct: 176 TPQPVFKSLLIQRIQKLSISFKNVVFAQIQISAINTLLFILFAFILLPLWGVHLPFAKTL 235

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            ++T +  +IP    +    ++    +  ++  A    L+  + +  ++  +   ++G  
Sbjct: 236 TILTFMFGLIPILGNLISNTLTFIAALTVSLGLAGAALLY-LVLVHKLEYFVNAKIIGHK 294

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           I          ++      GL GL   P+  A + +  K++
Sbjct: 295 INANAWEILLAMLVFESIFGLGGLIAAPIFYAYLKLELKDA 335


>gi|259649893|dbj|BAI42055.1| conserved hypothetical protein [Lactobacillus rhamnosus GG]
          Length = 913

 Score = 36.4 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 35/165 (21%)

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                + I  ++   + S F G    A+G      +A+++AGVP+     V+ +I+ +IP
Sbjct: 599 LGQVGELIESVIGGTVGSAFYGTVTTAVG----GFAAWFIAGVPA----TVLDSIVGIIP 650

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--------------FIVDKTLRPF-- 299
               I+    +  L   G I       + G+                   VD  +     
Sbjct: 651 IVGWIANGGNAAELGWVGGIT-GWLTGIVGSTVGAYYGATMAPGLSKDGKVDAVVSGVAL 709

Query: 300 --LVGGPIKLPFLPTFFGLVGGVRTMGLLGLF--------IGPVL 334
              +GG I             G+   G+ G+         +GP++
Sbjct: 710 GSTIGGLIGHTLSNWLISYTIGMIVFGIAGVIVVAAGFLGLGPIV 754


>gi|239814471|ref|YP_002943381.1| hypothetical protein Vapar_1464 [Variovorax paradoxus S110]
 gi|239801048|gb|ACS18115.1| conserved hypothetical protein [Variovorax paradoxus S110]
          Length = 354

 Score = 36.4 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 33/272 (12%), Positives = 82/272 (30%), Gaps = 8/272 (2%)

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            ++V  + + P+  L   G+ + +E +       +  +                E+    
Sbjct: 81  VLAVTLVLLAPIA-LISLGLSQAREYILDAPDQYRELLDYTARTVLELRLKLPPEIAVYL 139

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                 ++ +   +L+           +  G +   Y   I+  + A+           +
Sbjct: 140 PEGAAEVQRVVANYLRAQAGSLALAGRAWLGGLLFAYVGLIVGGLAAI----APSPLQRR 195

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L +        + +   +IV            + AI   L+     W   +P   AL  
Sbjct: 196 PLAAQLHRRIAIFGEAFGQIVAAQFWIAAFNTLLTAIF--LLFLMPLWGPHLPYTPALIT 253

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +T +  ++P    +   +V   + +  +   A     +  I +   +  +   +VG   +
Sbjct: 254 LTFVAGLVPIVGNLVCNSVITLVALSVSPVTALACLAF-LIIIHKAEYVINAKVVGSRTQ 312

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           +        +       G  GL   P+  A +
Sbjct: 313 MRVWELLAVMFVAEAVFGPAGLVAAPLFYAYL 344


>gi|217077216|ref|YP_002334934.1| membrane protein [Thermosipho africanus TCF52B]
 gi|217037071|gb|ACJ75593.1| membrane protein [Thermosipho africanus TCF52B]
          Length = 334

 Score = 36.4 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 24/208 (11%), Positives = 61/208 (29%), Gaps = 3/208 (1%)

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
           +++    D      +        + ++I + I+   +       +     +L        
Sbjct: 123 WIRPKLNDLTTSLLNNIAKGTPTFFITIFYSILLTIYILLYSSWLKNTFPNLFPKDIRND 182

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGA 258
                  V   + +    + I A+   +                L     I  +IP  G 
Sbjct: 183 VATFFDKVYSTLSNFVNVVVINAVITAIAFYIVSSFYFKELAAILSFWAGITNLIPIVGV 242

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
              +  V ++ L  G       +     I + +    +   ++   + L  +     ++ 
Sbjct: 243 FFEYVPVFLFSLTLG--LKGFIIVNIFVIAIHLALFIIFVNVMKMNLNLNPVLMIIAIII 300

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESI 346
             +  GL+G F    L+  I   W++ +
Sbjct: 301 VNQIFGLVGTFFAVPLLIFIVAYWEKFV 328


>gi|312797332|ref|YP_004030254.1| hypothetical protein RBRH_02124 [Burkholderia rhizoxinica HKI 454]
 gi|312169107|emb|CBW76110.1| Hypothetical membrane spanning protein [Burkholderia rhizoxinica
           HKI 454]
          Length = 376

 Score = 36.4 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 53/142 (37%), Gaps = 3/142 (2%)

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VPSHVALGVITAIMAMIPG 256
              + +    +++ +      + A   GL L  A  L    +P    L + T ++ ++P 
Sbjct: 226 RVSRFADAFRRIVFAQIKISAVNAFFTGLYLLVALPLFHSRLPLSKTLVIFTFVVGLLPV 285

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
              +    V + + +   I  A     +  + +  ++  L   +VGG I+         +
Sbjct: 286 VGNLISNTVIVLISLASGIGVAISSLAF-LVVIHKLEYFLNARIVGGEIEAKAWELLIAM 344

Query: 317 VGGVRTMGLLGLFIGPVLMALI 338
           +      GLLG+   P+  A I
Sbjct: 345 LVMEAAFGLLGVIAAPIFYAYI 366


>gi|237732590|ref|ZP_04563071.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229384331|gb|EEO34422.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 197

 Score = 36.4 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 64/185 (34%), Gaps = 7/185 (3%)

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           +P +L ++      +        +   +   S + +++    FI    +   M       
Sbjct: 16  LPNYLENLYQLFSQNHYIIDATKYLDVIYSGSMSIVESISTGFITGLIAFI-MKIPSILF 74

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
            +IF++I   F   D   I + +    E +       I   + +V+ + F    II I  
Sbjct: 75  DLIFVVITSLFILLDYSRIERLVVKRYEMVA-----LIIDTIKEVLSNLFKAYFIIMIIT 129

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLW 284
              L   + + G+   + L  I AI   +P  G  +      I   +   I+ A  L + 
Sbjct: 130 FGELWLGFKIIGINHSIMLACIIAIFDFMPVLGLDMIMIPWIIISALTNKIYLAGALLVI 189

Query: 285 GAIEL 289
             I +
Sbjct: 190 YMIIV 194


>gi|209901253|ref|YP_002290892.1| putative phage tail tape measure protein [Clostridium phage
           phiCD27]
 gi|199612134|gb|ACH91307.1| putative phage tail tape measure protein [Clostridium phage
           phiCD27]
          Length = 1429

 Score = 36.4 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 51/140 (36%), Gaps = 25/140 (17%)

Query: 181 GFSISQQLDSLGEHL---FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
           G  + +      E L    P    KI   V   I++      I ++ +G++      +AG
Sbjct: 536 GQKLGKVTRGFVEQLTKDMPKIGDKIVGFVSSFIKNFDK---IKSVLQGVISIIGGVVAG 592

Query: 238 VPSHVALGVITAIMAMI---------PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
             +  AL VI++++++I          GG       +   +L  G +     LF +   E
Sbjct: 593 FMAFKALTVISSVISIITKIATASTLIGGIVGVLGPIGAIVLAIG-MLAGAFLFAYQKSE 651

Query: 289 LF---------IVDKTLRPF 299
           +F          +   L+P 
Sbjct: 652 IFRNGIKNIGKSMSNFLKPL 671


>gi|328781603|ref|XP_001121067.2| PREDICTED: major facilitator superfamily domain-containing protein
           6-like [Apis mellifera]
          Length = 841

 Score = 36.4 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 49/144 (34%), Gaps = 16/144 (11%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
            +  F+  F        I  F  W      I     S +   +  T++V  +  +PLL L
Sbjct: 509 AAALFIACFILGTAWGYIESFLFW-----LIQDLGGSRSL--MGITITVGGIAGIPLLVL 561

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
                     ++SK+  AN   I    +   + G       W  H    ++L+ ++ +  
Sbjct: 562 -------SGPIISKIGHANVLFIGFVFYAIRLCGYSLIYNPW--HTLFFEALESVTLSLS 612

Query: 142 KTNGIDFIPRFASRFGMIFLDYCL 165
            T  + +  + ++      +   L
Sbjct: 613 FTAAVTYAAKLSTTTTDSSIQGLL 636


>gi|258539763|ref|YP_003174262.1| membrane protein [Lactobacillus rhamnosus Lc 705]
 gi|257151439|emb|CAR90411.1| Conserved membrane protein [Lactobacillus rhamnosus Lc 705]
          Length = 913

 Score = 36.4 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 35/165 (21%)

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                + I  ++   + S F G    A+G      +A+++AGVP+     V+ +I+ +IP
Sbjct: 599 LGQVGELIESVIGGTVGSAFYGTVTTAVG----GFAAWFIAGVPA----TVLDSIVGIIP 650

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--------------FIVDKTLRPF-- 299
               I+    +  L   G I       + G+                   VD  +     
Sbjct: 651 IVGWIANGGNAAELGWVGGIT-GWLTGIVGSTVGAYYGATMAPGLSKDGKVDAVVSGVAL 709

Query: 300 --LVGGPIKLPFLPTFFGLVGGVRTMGLLGLF--------IGPVL 334
              +GG I             G+   G+ G+         +GP++
Sbjct: 710 GSTIGGLIGHTLSNWLISYTIGMIVFGIAGVIVVAAGFLGLGPIV 754


>gi|158290094|ref|XP_311695.3| AGAP003409-PA [Anopheles gambiae str. PEST]
 gi|157018291|gb|EAA07404.3| AGAP003409-PA [Anopheles gambiae str. PEST]
          Length = 786

 Score = 36.4 bits (83), Expect = 6.9,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 62/203 (30%), Gaps = 18/203 (8%)

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +    + + +   L  + +  +       G   L +    I     LF+  +       +
Sbjct: 562 ADSLWMLLRTNLTLLLSAVGTLVSAILGGGHAVLKFLFHTIIFFTTLFYLLQSSQ---DR 618

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG-----VPSHV 242
                  +  ++  +I + +   I S  +    +A+  GL     + + G     +P   
Sbjct: 619 YAPTAITINNSWGPRIIQALEDSISSVVVATLKLALFHGLFTWLTHTVFGAHIVYLP--- 675

Query: 243 ALGVITAIMAMIPGG-APISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTLRPFL 300
              V+ +I+A  P            + L +  + F     L L   I     +  +   +
Sbjct: 676 --AVLASILAAAPFLETYWCSAPAFLDLWLSQDRFWLGVTLVLIHFIVPSNFNPIIHSEI 733

Query: 301 VGGPIKLPFLPTFFGLVGGVRTM 323
            GG        T   + GG+   
Sbjct: 734 KGGG---HPYLTGLSIAGGMYLF 753


>gi|315301769|ref|ZP_07872818.1| YubA [Listeria ivanovii FSL F6-596]
 gi|313629860|gb|EFR97944.1| YubA [Listeria ivanovii FSL F6-596]
          Length = 111

 Score = 36.4 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 1/90 (1%)

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
            T   I  ++         + +W  +   +  K + P ++G  +K+  +   F ++    
Sbjct: 1   ITPAIIIAIVTSPWLLVKLIIVWC-VVQLLEGKFISPQVMGKTLKVHPITILFVILIAGN 59

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             G+LG+       A++ VI     +  K 
Sbjct: 60  LFGVLGVIFAVPGYAVLKVIVTHVFIWFKR 89


>gi|94676634|ref|YP_588599.1| hypothetical protein BCI_0130 [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|94219784|gb|ABF13943.1| conserved hypothetical protein [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 335

 Score = 36.4 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 51/143 (35%), Gaps = 7/143 (4%)

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLA------GVPSHVALGVITAIMAMIPGGAPI 260
           + +  R   L    +++   L+     ++        +P    L ++T I  ++P    +
Sbjct: 189 LAEAFRHVVLAQIKVSLFNTLLTSIMMFIVFPYLNINLPLGKTLIILTFIFGLLPIIGNL 248

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
               + I   +  +I     + L+  I +  ++  +   +VG  I          ++   
Sbjct: 249 ISNLMIIISALSVSITVGGFMLLY-LIFIHKLEYFINAEIVGSRIHAKSWELLLAMLISE 307

Query: 321 RTMGLLGLFIGPVLMALIAVIWK 343
              GL GL  GP+  A I    +
Sbjct: 308 AAFGLEGLVAGPIYYAYIKTELR 330


>gi|219852249|ref|YP_002466681.1| hypothetical protein Mpal_1646 [Methanosphaerula palustris E1-9c]
 gi|219546508|gb|ACL16958.1| hypothetical protein Mpal_1646 [Methanosphaerula palustris E1-9c]
          Length = 438

 Score = 36.4 bits (83), Expect = 7.3,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 69/185 (37%), Gaps = 13/185 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+  + +P  +    ++ I  + L+ + GF    + AL++ + +  +     ++   +  
Sbjct: 235 MKVPLPSPIPMSWISLLMIGGLFLFLIIGFV--FIPALVLAYITVGLSRWIEAR--SAPW 290

Query: 61  FLAVIATVSVMCLFIVPLLFL-----FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
             +++  +  +CL +VP   +        G++E   L + + +      P P +L  +  
Sbjct: 291 IHSLLPPLVAVCLIVVPAGIVPFVDQVSAGVIEGIVLAALISMG--VMTPWPLFLERLKV 348

Query: 116 GMWASELWTKHLSHPQSLKILSETF--LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
               + ++   +     L +    +  L  +   F+   A  F    +   +  +  ++ 
Sbjct: 349 VKPQTAVFICGIGTFFVLTLGIMPWTQLSPDLGGFLIALAQPFPSAAVRSVIFYLESVVI 408

Query: 174 LFFFY 178
               Y
Sbjct: 409 AIVLY 413


>gi|227326325|ref|ZP_03830349.1| hypothetical protein PcarcW_03039 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 336

 Score = 36.4 bits (83), Expect = 7.5,   Method: Composition-based stats.
 Identities = 46/308 (14%), Positives = 101/308 (32%), Gaps = 14/308 (4%)

Query: 40  IGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA 99
           I     P +   IS K      +AVI+T+ V  L ++    +              V + 
Sbjct: 42  IVNLLTPYFQRVISGKRARWIVVAVISTLVVSLLSLLFGSLVGLLMQEMKDTAAFNVRIG 101

Query: 100 NQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI 159
                   + +  +PG +  S    +H         +    L+  G  F+  F +    +
Sbjct: 102 YILNDIQQQIVHYLPGYLPVSIEELQHELLQWVQAHIV--MLQNMGKSFLHGFVTMLIGM 159

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
            L   +S+         +  D  +    L +               IV   ++ + +   
Sbjct: 160 VLGAIVSL---------YNVDKDTEKPLLKAELLRRVSLLSASFRNIVFAQVKISAVNTV 210

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNAT 279
           + AI   ++         +P    L V+T +  ++P    +   ++     +  ++  A 
Sbjct: 211 LSAIF--ILGALPLCGIHLPFAKTLVVLTFVFGLLPVIGNLISNSIVFLSGLSLSLPIAL 268

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              ++  + +  ++  L   +VG  IK         ++      GL G+   P+  A + 
Sbjct: 269 VALVYLML-IHKLEYFLNAQIVGTRIKAHAWEILLAMLVFEAAFGLSGVIAAPIYYAYLK 327

Query: 340 VIWKESIM 347
              KE+ +
Sbjct: 328 SELKEASL 335


>gi|225389530|ref|ZP_03759254.1| hypothetical protein CLOSTASPAR_03278 [Clostridium asparagiforme
           DSM 15981]
 gi|225044415|gb|EEG54661.1| hypothetical protein CLOSTASPAR_03278 [Clostridium asparagiforme
           DSM 15981]
          Length = 77

 Score = 36.4 bits (83), Expect = 7.5,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 30/66 (45%)

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             + P +VGG + LP +     +  G   MG++G+ +   L +++  + +E++      K
Sbjct: 5   NLIYPHVVGGSVGLPSIWVLVAVTVGGSMMGVVGMLLFIPLCSVLYALLREAVHGRLAQK 64

Query: 354 EKISSN 359
           +     
Sbjct: 65  KAQRDE 70


>gi|199597076|ref|ZP_03210508.1| hypothetical protein LRH_07071 [Lactobacillus rhamnosus HN001]
 gi|258508586|ref|YP_003171337.1| membrane protein [Lactobacillus rhamnosus GG]
 gi|199591880|gb|EDY99954.1| hypothetical protein LRH_07071 [Lactobacillus rhamnosus HN001]
 gi|257148513|emb|CAR87486.1| Conserved membrane protein [Lactobacillus rhamnosus GG]
          Length = 906

 Score = 36.4 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 35/165 (21%)

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                + I  ++   + S F G    A+G      +A+++AGVP+     V+ +I+ +IP
Sbjct: 592 LGQVGELIESVIGGTVGSAFYGTVTTAVG----GFAAWFIAGVPA----TVLDSIVGIIP 643

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--------------FIVDKTLRPF-- 299
               I+    +  L   G I       + G+                   VD  +     
Sbjct: 644 IVGWIANGGNAAELGWVGGIT-GWLTGIVGSTVGAYYGATMAPGLSKDGKVDAVVSGVAL 702

Query: 300 --LVGGPIKLPFLPTFFGLVGGVRTMGLLGLF--------IGPVL 334
              +GG I             G+   G+ G+         +GP++
Sbjct: 703 GSTIGGLIGHTLSNWLISYTIGMIVFGIAGVIVVAAGFLGLGPIV 747


>gi|126642497|ref|YP_001085481.1| hypothetical protein A1S_2461 [Acinetobacter baumannii ATCC 17978]
          Length = 312

 Score = 36.4 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 67/198 (33%), Gaps = 4/198 (2%)

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                      L   ++++  +I        GF   +    + + L     +K+S     
Sbjct: 114 VTTLKNASSDILHNLVTMVMGLIIGILVAIHGFH-RRTPQPVFKSLLIQRIQKLSISFRN 172

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGVITAIMAMIPGGAPISFTAVSI 267
           V+ +      I  +   L       + GV  P    L ++T +  +IP    +    ++ 
Sbjct: 173 VVFAQIKISAINTLLFILFAFVLLPIWGVHLPFAKTLTILTFMFGLIPILGNLISNTLTF 232

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
              +  ++  A    L+  + +  ++  +   ++G  I          ++      GL G
Sbjct: 233 IAALTISLGLAGVALLY-LVLVHKLEYFINAKIIGHKINANAWEILLAMLIFESIFGLSG 291

Query: 328 LFIGPVLMALIAVIWKES 345
           L   P+  A + +  K++
Sbjct: 292 LIAAPIFYAYLKLELKDA 309


>gi|294788016|ref|ZP_06753260.1| putative membrane protein [Simonsiella muelleri ATCC 29453]
 gi|294484309|gb|EFG31992.1| putative membrane protein [Simonsiella muelleri ATCC 29453]
          Length = 335

 Score = 36.4 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 3/149 (2%)

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L  L    F       +++    +R + L   + AI   L+         +P    L V 
Sbjct: 178 LAQLLRSEFQNLLHDFNQVFFAQVRISALNTFLTAIY--LLGVMPLMGKPLPLSGTLVVF 235

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           T    ++P    +      + L +   +  +T   LW  + +  ++  L    +G  IK 
Sbjct: 236 TFFAGLLPVVGNLISNTFIVILSLNHGVTISTLSLLW-LMSIHKLEYFLNAHFIGHKIKA 294

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
                   ++      GL GL   P++ A
Sbjct: 295 SAWEALLAMLVLESAFGLAGLISAPIIYA 323


>gi|134093359|ref|YP_001098434.1| putative permease [Herminiimonas arsenicoxydans]
 gi|133737262|emb|CAL60305.1| putative permease [Herminiimonas arsenicoxydans]
          Length = 337

 Score = 36.4 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 36/325 (11%), Positives = 106/325 (32%), Gaps = 16/325 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYS-SFISKKEESSTFLAVIATVSVMCLFI 75
           + +    L  +       L + ++ ++   + +     K         V+A   + CL +
Sbjct: 16  VLMGAALLLVMHQGLLAALFSGLLVYSLVQLLAPKLGKKLVGRR--AQVVAVALLSCLIV 73

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L    +  +  ++    ++ +  Q    +             + +         +L+ 
Sbjct: 74  AALTVGIWGAIRFLQSDAGRISVLLQKMADILEASRS----QIPAWMAAYIPVDADALRD 129

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +   +L+ + ++      +  G I     + +I   +A  +      + +          
Sbjct: 130 MLTGWLRAHALE-ARSMGNEAGRILAHILIGMIIGAMAALY-----DTTTTNNYKPLAAA 183

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV--ALGVITAIMAM 253
                  +      ++ +      I A+  G+ L     LAG+   +   + V+T ++ +
Sbjct: 184 LHVRVVVLHEAFRNIVFAQVRIAAINAVLTGIYLIVILPLAGIELPLRKTMVVVTFLVGL 243

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +P    +    + + + +  ++  A    L+  + +  ++  L   ++G  I        
Sbjct: 244 LPVIGNLISNTILVIIGLSHSLHTALGSLLF-LMTIHKLEYFLNAKIIGHHIDARTWELL 302

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALI 338
             ++      G+ G+   PV  A I
Sbjct: 303 TAMLVMESIFGIPGVVAAPVFYAYI 327


>gi|66828341|ref|XP_647525.1| hypothetical protein DDB_G0268060 [Dictyostelium discoideum AX4]
 gi|60475548|gb|EAL73483.1| hypothetical protein DDB_G0268060 [Dictyostelium discoideum AX4]
          Length = 814

 Score = 36.4 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 11/113 (9%)

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           ++         VP  +A  V+  + A+   G    +  + IY  + G    A       +
Sbjct: 84  ILSSITVATMLVPQGLAYAVLAGLPAI--YGLYSGWLPLVIYSFMGGCKQLAVGPEALLS 141

Query: 287 IELFIV---------DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           + L  +         D TL  +LV   + L  L      + G+   G LG  +
Sbjct: 142 VLLGSILGGYTTPPEDMTLNDYLVSIALTLALLVGIVSFLFGICQFGFLGGIL 194


>gi|186475107|ref|YP_001856577.1| hypothetical protein Bphy_0338 [Burkholderia phymatum STM815]
 gi|184191566|gb|ACC69531.1| conserved hypothetical protein [Burkholderia phymatum STM815]
          Length = 361

 Score = 36.4 bits (83), Expect = 8.0,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 86/274 (31%), Gaps = 10/274 (3%)

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +A V +  + +  L       +   ++ V  V       + +              E   
Sbjct: 88  LAVVILSVVIVGTLTGFTVAVIEHFEKDVPSVQKLLDQAMSLIDQ-----ARGRLPEFIA 142

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           ++L             L       + +       IF    + +I   I      R    +
Sbjct: 143 QNLPVSTEQMKEKAAVLMQTHASTLSQGGKNAARIFTHVLIGMIIGAIIAVGAQRHLQRL 202

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              L +        +     RIV   ++ + +      I   L+L    + A +P    L
Sbjct: 203 P--LSTAFIARVSRFADAFRRIVFAQVKISAINTVFTGIFLLLLLPI--FHAPLPMAKTL 258

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            +IT I+ ++P    +    + + + +  +   A    ++  I +  ++  L   +VGG 
Sbjct: 259 VMITFIVGLLPVIGNLISNTLIVAVALSVSFPAAVTALIF-LILIHKLEYFLNARIVGGQ 317

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           I+         ++      G+ G+   P+  A I
Sbjct: 318 IEARAWELLIAMLVMEAAFGIPGVIAAPIFYAYI 351


>gi|21222845|ref|NP_628624.1| integral membrane protein [Streptomyces coelicolor A3(2)]
 gi|7635967|emb|CAB88464.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
          Length = 333

 Score = 36.4 bits (83), Expect = 8.0,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 72/239 (30%), Gaps = 9/239 (3%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + +  ++ +   L    A V+ A+II   S PI    +   +   T  A    +  + + 
Sbjct: 43  LTLSAVIAACGILTDSTATVIGAMIIAPLSTPIMGIALGAVQRRRTTAAAFVALGCLLVI 102

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +V    +    + +  +L++   +A +    +   +S +  G   +    +         
Sbjct: 103 LV--GAVASLVVPQSYDLLTNGQIAGRTSPGLLDLISALATGFAGAVALARKDVAAVLPG 160

Query: 135 ILSETFL-------KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +     L                  A    ++FL    +++F  + +F       + + +
Sbjct: 161 VAIAISLVPPLVVTGVCAGQAAWWLALGALVLFLSNLFALVFAGMIVFTVLAYARTGAHR 220

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
                           + ++  +  +T   + +          +  WL   P      V
Sbjct: 221 AHRGPRRAHVMLGLLFTAVLLPLGANTVATVLLNTWTLRAKSAAERWLTDSPGATVTSV 279


>gi|194364833|ref|YP_002027443.1| hypothetical protein Smal_1055 [Stenotrophomonas maltophilia
           R551-3]
 gi|194347637|gb|ACF50760.1| conserved hypothetical protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 341

 Score = 36.0 bits (82), Expect = 8.3,   Method: Composition-based stats.
 Identities = 45/323 (13%), Positives = 99/323 (30%), Gaps = 15/323 (4%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           +M ++ + L    G    +LS L++   +  + S+   K          +  +S      
Sbjct: 20  LMMLLGMWLALKLGLVVTLLSGLLVFQLTHLLASTVEGKLPPGRARAIAVIVLS------ 73

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
                +    +L    + S           +   L +I                P+ +  
Sbjct: 74  ---AVIISALVLAGIGVASFFRNETGGPDALLARLMEILNSSRHQVPALLQPYIPEDMPA 130

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           L              R     G   +   + ++  ++              ++  L + L
Sbjct: 131 LRTALNDWAAEH--QRQLGVAGTSVVQVGVRVLIGMVLGAMIALYDELPLPKMGPLAQEL 188

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV--ALGVITAIMAM 253
                 +++    +V+ +      +  +   + L     L GV   +   L +IT I  +
Sbjct: 189 IG-RTSRLATAFRQVVFAQVKISLLNTVFTAIFLLGVLPLFGVHLPLSKTLVLITFIAGL 247

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +P    I    +   + +  + + A    L+  I +  ++  L   +VGG I+       
Sbjct: 248 LPVVGNIISNTIITIVALSVSFYVAVAALLY-LIVIHKLEYFLNARIVGGEIQARAWELL 306

Query: 314 FGLVGGVRTMGLLGLFIGPVLMA 336
             ++      GL GL   PV  A
Sbjct: 307 LAMLVMEAAFGLPGLVAAPVFYA 329


>gi|227113502|ref|ZP_03827158.1| hypothetical protein PcarbP_11087 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 336

 Score = 36.0 bits (82), Expect = 8.5,   Method: Composition-based stats.
 Identities = 46/308 (14%), Positives = 100/308 (32%), Gaps = 14/308 (4%)

Query: 40  IGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA 99
           I     P +   IS K      +AVI+T+ V  L ++    +              V + 
Sbjct: 42  IVNLLTPYFQRVISGKRARWIVVAVISTLVVSLLSLLFGSLVGLLMQEMKDTAAFNVRIG 101

Query: 100 NQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI 159
                   + +  +PG +  S    +H         +    L+  G  F+  F +    +
Sbjct: 102 YILNDIQQQIVHYLPGYLPVSIEELQHELLQWVQAHIV--MLQNMGKSFLHGFVTMLIGM 159

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
            L   +S+         +  D  +    L +               IV   ++ + +   
Sbjct: 160 VLGAIVSL---------YNVDKDTEKPLLKAELLRRVSLLSASFRNIVFAQVKISAVNTV 210

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNAT 279
           + AI   ++         +P    L V+T +  ++P    +   ++     +  ++  A 
Sbjct: 211 LSAIF--ILGALPLCGVHLPFAKTLVVLTFVFGLLPVIGNLISNSIVFLSGLSLSLPIAL 268

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              ++  + +   +  L   +VG  IK         ++      GL G+   P+  A + 
Sbjct: 269 VALVYLML-IHKFEYFLNAQIVGTRIKAHAWEILLAMLVFEAAFGLSGVIAAPIYYAYLK 327

Query: 340 VIWKESIM 347
              KE+ +
Sbjct: 328 SELKEASL 335


>gi|332181141|gb|AEE16829.1| H(+)-transporting two-sector ATPase [Treponema brennaborense DSM
           12168]
          Length = 445

 Score = 36.0 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 58/164 (35%), Gaps = 14/164 (8%)

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
           T+ LS P +L         T          + FG + + + +    + I  FF    G  
Sbjct: 34  TQPLSVPDALFTSVSAVCVTGLCTVPMSTFTVFGKVVILFLIQFGGLGIITFFSLYIGIG 93

Query: 184 ISQQLDSLGEHLFPAYW-KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             +++  +   +  +++  ++     K++R+       I +   + L  A+  AGVP+  
Sbjct: 94  SRRRVSFMNRKMIRSFFIDEVESDHKKIVRNIVSITLGIELAGAVCLYGAFSAAGVPNPA 153

Query: 243 ALGVITAIMAMIPGGA-------------PISFTAVSIYLLIKG 273
              V  A+ +    G              P     +++ + + G
Sbjct: 154 FTAVFHAVSSFCNAGFSTFNDSLAGFADNPAVLVPIAVLIFLGG 197


>gi|190573224|ref|YP_001971069.1| putative transmembrane protein [Stenotrophomonas maltophilia K279a]
 gi|190011146|emb|CAQ44755.1| putative transmembrane protein [Stenotrophomonas maltophilia K279a]
          Length = 341

 Score = 36.0 bits (82), Expect = 9.4,   Method: Composition-based stats.
 Identities = 46/323 (14%), Positives = 98/323 (30%), Gaps = 15/323 (4%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           +M ++ + L    G    +LS L++   +  + S+   K          +  +S      
Sbjct: 20  LMMLLGMWLALKLGLVVTLLSGLLVFQLTHVLASTVEGKLPPGRARAIAVIVLS------ 73

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
                +    +L    + S           +   L DI                P+ +  
Sbjct: 74  ---AIIISALVLAGIGVASFFRNETGGPDALLARLMDILNSSRHQVPALLQPYIPEDMPA 130

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           L              R     G   +   + ++  ++               +  L + L
Sbjct: 131 LRAALNDWAAEH--QRQLGVAGTSVVQVGVRVLIGMVLGAMIALYDELPLPTMGPLAQEL 188

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV--ALGVITAIMAM 253
                 +++    +V+ +      +  +   + L     L GV   +   L +IT I  +
Sbjct: 189 IG-RTSRLATAFRQVVFAQVKISLLNTLFTAIFLLGVLPLFGVHLPLSKTLVLITFIAGL 247

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +P    I    +   + +  + + A    L+  I +  ++  L   +VGG I+       
Sbjct: 248 LPVVGNIISNTIISIVALSVSFYVAVAALLY-LIVIHKLEYFLNARIVGGEIQARAWELL 306

Query: 314 FGLVGGVRTMGLLGLFIGPVLMA 336
             ++      GL GL   PV  A
Sbjct: 307 LAMLVMEAAFGLPGLVAAPVFYA 329


>gi|242018574|ref|XP_002429749.1| transmembrane protein, putative [Pediculus humanus corporis]
 gi|212514761|gb|EEB17011.1| transmembrane protein, putative [Pediculus humanus corporis]
          Length = 185

 Score = 36.0 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 24/193 (12%)

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
             +S I    ALF+   +      +   L  +L      K+       I   F+    +A
Sbjct: 1   MFISTIVFFTALFYLL-NSSGSRYKPVELLSNLSIINGSKLGSAFEAAINGVFMASFKMA 59

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNI-FNATC 280
           +  GL     +    V       V+ A++  +P  G   +     + L +     F A  
Sbjct: 60  LFYGLWTWLIHNFFQVRIVYLPSVLAAVLGAVPFLGTYWASIPAVLDLWLAQQKGFQAII 119

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           LFL+                     +     T   + GGV  MG+ G   GP+L+  + V
Sbjct: 120 LFLF---------------------QCHPYMTGLAIAGGVFCMGIQGAIFGPLLLCCLLV 158

Query: 341 IWKESIMAIKENK 353
               S   +KE+ 
Sbjct: 159 ALNMSSNLLKESP 171


>gi|325122991|gb|ADY82514.1| hypothetical protein BDGL_001928 [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 338

 Score = 36.0 bits (82), Expect = 9.8,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 92/281 (32%), Gaps = 8/281 (2%)

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
               + L IV +  + ++    +  +V  +     H I      + +      ++    +
Sbjct: 61  IFISILLSIVTISLIGFFITSLISFVVYDLKGVGLHSINSKVDQTLLHLQAEITKYLPGY 120

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +    +           + +  +   +S     F+   + +I  I+     +       +
Sbjct: 121 IPDSVTDLKDEIFAFMKDNVTTLKNTSSDILHNFVTMVMGLIIGILVAIHGFH-----RR 175

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVAL 244
               + + L     +K+S     V+ +      I  +   L       L GV  P    L
Sbjct: 176 TPQPVFKSLLIQRIQKLSISFKNVVFAQIKISAINTLLFILFAFILLPLWGVHLPFAKTL 235

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            ++T +  +IP    +    ++    +  ++  A    L+  + +  ++  +   ++G  
Sbjct: 236 TILTFMFGLIPILGNLLSNTLTFIAALTISLGLAGAALLY-LVLVHKLEYFINAKIIGHK 294

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           I          ++      GL GL   P+  A + +  K++
Sbjct: 295 INANAWEILLAMLVFESIFGLGGLIAAPIFYAYLKLELKDA 335


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.320    0.157    0.437 

Lambda     K      H
   0.267   0.0479    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,143,553,166
Number of Sequences: 13984884
Number of extensions: 358544550
Number of successful extensions: 3341368
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 7051
Number of HSP's successfully gapped in prelim test: 48685
Number of HSP's that attempted gapping in prelim test: 3224634
Number of HSP's gapped (non-prelim): 126037
length of query: 360
length of database: 4,792,584,752
effective HSP length: 140
effective length of query: 220
effective length of database: 2,834,700,992
effective search space: 623634218240
effective search space used: 623634218240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 82 (36.0 bits)